Query 004207
Match_columns 768
No_of_seqs 828 out of 4490
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 17:40:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004207.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004207hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyh_C Platelet-activating fac 100.0 8.3E-34 2.8E-38 316.3 36.1 246 502-768 116-408 (410)
2 2ynn_A Coatomer subunit beta'; 100.0 2E-33 6.8E-38 299.8 34.7 237 497-768 16-256 (304)
3 1got_B GT-beta; complex (GTP-b 100.0 7.5E-33 2.6E-37 300.1 37.8 261 474-768 69-340 (340)
4 3ow8_A WD repeat-containing pr 100.0 9.2E-33 3.2E-37 297.9 37.3 245 505-768 47-318 (321)
5 3frx_A Guanine nucleotide-bind 100.0 1.8E-32 6.3E-37 294.6 38.9 256 497-768 20-314 (319)
6 4ery_A WD repeat-containing pr 100.0 3.6E-32 1.2E-36 289.3 39.4 250 498-768 27-309 (312)
7 4gqb_B Methylosome protein 50; 100.0 2E-32 6.9E-37 298.9 35.1 230 506-768 93-328 (344)
8 2pbi_B Guanine nucleotide-bind 100.0 6.2E-32 2.1E-36 295.2 36.9 265 473-768 77-354 (354)
9 4g56_B MGC81050 protein; prote 100.0 7.2E-33 2.5E-37 303.2 27.3 255 497-768 45-340 (357)
10 2xzm_R RACK1; ribosome, transl 100.0 2.5E-31 8.5E-36 288.2 37.4 249 505-768 38-337 (343)
11 3fm0_A Protein CIAO1; WDR39,SG 100.0 4.3E-31 1.5E-35 287.1 37.5 253 499-768 21-332 (345)
12 4aow_A Guanine nucleotide-bind 100.0 1.4E-30 4.8E-35 277.9 39.4 261 494-768 38-334 (340)
13 3iz6_a 40S ribosomal protein R 100.0 1.3E-31 4.4E-36 295.1 29.4 271 473-768 79-372 (380)
14 2hes_X YDR267CP; beta-propelle 100.0 9.2E-31 3.1E-35 282.7 35.4 243 508-768 26-325 (330)
15 1vyh_C Platelet-activating fac 100.0 6E-31 2E-35 293.2 32.3 218 549-768 102-366 (410)
16 4gqb_B Methylosome protein 50; 100.0 1.7E-31 5.8E-36 291.6 27.2 241 501-768 37-286 (344)
17 1erj_A Transcriptional repress 100.0 5.1E-30 1.7E-34 283.6 38.0 270 495-768 65-386 (393)
18 3dm0_A Maltose-binding peripla 100.0 2.1E-30 7.3E-35 307.7 37.2 249 505-768 394-690 (694)
19 2pm7_B Protein transport prote 100.0 9.6E-31 3.3E-35 278.0 30.1 243 498-768 13-282 (297)
20 2ynn_A Coatomer subunit beta'; 100.0 5.3E-30 1.8E-34 273.2 35.8 257 474-765 27-297 (304)
21 1got_B GT-beta; complex (GTP-b 100.0 3.7E-30 1.3E-34 278.9 35.0 230 503-768 64-298 (340)
22 1nr0_A Actin interacting prote 100.0 2.7E-30 9.1E-35 302.9 36.5 266 482-768 39-352 (611)
23 1gxr_A ESG1, transducin-like e 100.0 1.4E-29 4.7E-34 268.9 38.4 256 496-768 53-334 (337)
24 3zwl_B Eukaryotic translation 100.0 2.2E-29 7.6E-34 270.4 39.0 251 497-768 35-343 (369)
25 1nr0_A Actin interacting prote 100.0 4.4E-30 1.5E-34 301.1 35.1 250 499-768 152-564 (611)
26 4e54_B DNA damage-binding prot 100.0 6E-31 2E-35 294.8 26.3 244 505-768 131-427 (435)
27 2ymu_A WD-40 repeat protein; u 100.0 2.9E-29 9.9E-34 289.0 38.5 268 475-768 277-577 (577)
28 3ei3_B DNA damage-binding prot 100.0 1.6E-29 5.6E-34 276.4 34.0 246 502-768 81-379 (383)
29 4gga_A P55CDC, cell division c 100.0 1.2E-28 3.9E-33 274.7 37.9 242 506-768 116-392 (420)
30 2pbi_B Guanine nucleotide-bind 100.0 4.3E-29 1.5E-33 272.6 33.6 233 502-768 72-312 (354)
31 3ow8_A WD repeat-containing pr 100.0 4.9E-29 1.7E-33 268.7 33.3 220 547-768 24-276 (321)
32 1k8k_C P40, ARP2/3 complex 41 100.0 7.5E-29 2.6E-33 267.8 34.1 252 499-768 13-358 (372)
33 3bg1_A Protein SEC13 homolog; 100.0 5E-30 1.7E-34 275.2 23.9 241 499-768 18-290 (316)
34 3f3f_A Nucleoporin SEH1; struc 100.0 5.1E-29 1.7E-33 263.9 30.4 254 500-768 17-334 (351)
35 4a11_B DNA excision repair pro 100.0 3E-28 1E-32 265.8 37.3 258 498-768 47-362 (408)
36 3fm0_A Protein CIAO1; WDR39,SG 100.0 7.5E-29 2.6E-33 269.4 31.6 209 545-768 5-222 (345)
37 3vl1_A 26S proteasome regulato 100.0 6.9E-29 2.4E-33 273.8 31.8 273 475-768 71-416 (420)
38 4ery_A WD repeat-containing pr 100.0 1.6E-28 5.3E-33 261.2 33.3 222 545-768 13-265 (312)
39 4aez_A CDC20, WD repeat-contai 100.0 2.6E-28 8.9E-33 269.9 35.5 257 476-768 107-377 (401)
40 3frx_A Guanine nucleotide-bind 100.0 1.2E-28 4.2E-33 264.7 31.9 207 543-768 5-224 (319)
41 3jrp_A Fusion protein of prote 100.0 1.6E-28 5.3E-33 265.2 31.1 241 500-768 17-284 (379)
42 4ggc_A P55CDC, cell division c 100.0 7.5E-28 2.5E-32 254.2 35.7 242 506-768 36-312 (318)
43 1sq9_A Antiviral protein SKI8; 100.0 1.8E-28 6.1E-33 268.1 31.4 246 507-768 27-392 (397)
44 3i2n_A WD repeat-containing pr 100.0 7.1E-29 2.4E-33 266.1 27.6 251 499-768 23-350 (357)
45 3k26_A Polycomb protein EED; W 100.0 1.7E-28 5.8E-33 263.6 30.0 243 506-768 34-363 (366)
46 3iz6_a 40S ribosomal protein R 100.0 4.5E-29 1.5E-33 274.8 25.2 242 498-768 70-326 (380)
47 1r5m_A SIR4-interacting protei 100.0 8.1E-28 2.8E-32 263.4 35.1 254 499-768 50-422 (425)
48 1erj_A Transcriptional repress 100.0 4.1E-28 1.4E-32 268.4 32.5 213 553-768 62-338 (393)
49 1gxr_A ESG1, transducin-like e 100.0 5E-28 1.7E-32 256.9 31.9 216 551-768 47-293 (337)
50 2ymu_A WD-40 repeat protein; u 100.0 1.7E-27 5.9E-32 274.1 38.7 268 476-768 237-536 (577)
51 3dwl_C Actin-related protein 2 100.0 2.5E-29 8.6E-34 273.6 22.0 241 497-767 14-278 (377)
52 2j04_B YDR362CP, TAU91; beta p 100.0 2.5E-29 8.6E-34 290.0 23.0 234 503-768 170-425 (524)
53 2pm7_B Protein transport prote 100.0 2.7E-28 9.2E-33 259.1 28.5 208 549-768 3-235 (297)
54 2xzm_R RACK1; ribosome, transl 100.0 7.8E-28 2.7E-32 260.7 32.7 205 544-768 10-241 (343)
55 3v7d_B Cell division control p 100.0 5E-27 1.7E-31 263.4 37.9 239 506-768 132-418 (464)
56 3vl1_A 26S proteasome regulato 100.0 2.6E-28 8.8E-33 269.3 26.5 233 499-768 61-319 (420)
57 2pm9_A Protein WEB1, protein t 100.0 2.5E-28 8.7E-33 268.2 25.4 239 498-768 71-334 (416)
58 2hes_X YDR267CP; beta-propelle 100.0 2.5E-27 8.5E-32 255.7 32.2 207 545-768 4-227 (330)
59 4h5i_A Guanine nucleotide-exch 100.0 1.6E-27 5.4E-32 261.7 30.8 198 553-768 131-340 (365)
60 3dw8_B Serine/threonine-protei 100.0 4E-28 1.4E-32 269.6 26.0 244 499-768 33-370 (447)
61 2j04_B YDR362CP, TAU91; beta p 100.0 3E-28 1E-32 280.9 24.9 252 506-768 225-514 (524)
62 3mkq_A Coatomer beta'-subunit; 100.0 3E-27 1E-31 283.6 33.2 235 499-768 18-256 (814)
63 4g56_B MGC81050 protein; prote 100.0 9.7E-28 3.3E-32 262.4 26.3 215 552-768 39-298 (357)
64 3odt_A Protein DOA1; ubiquitin 100.0 9.9E-27 3.4E-31 244.6 32.4 237 504-768 27-293 (313)
65 2xyi_A Probable histone-bindin 100.0 4.1E-27 1.4E-31 263.5 29.9 259 499-768 133-407 (430)
66 2aq5_A Coronin-1A; WD40 repeat 100.0 3.1E-27 1.1E-31 260.8 27.6 230 508-768 49-296 (402)
67 2pm9_A Protein WEB1, protein t 100.0 3.5E-27 1.2E-31 259.1 27.1 237 500-768 18-291 (416)
68 3sfz_A APAF-1, apoptotic pepti 100.0 1.6E-26 5.6E-31 290.9 36.2 250 497-768 618-910 (1249)
69 3gre_A Serine/threonine-protei 100.0 6.2E-27 2.1E-31 260.5 27.6 285 474-768 78-437 (437)
70 3bg1_A Protein SEC13 homolog; 100.0 1.5E-27 5.1E-32 255.9 21.7 206 550-768 8-244 (316)
71 3jrp_A Fusion protein of prote 100.0 8.6E-27 2.9E-31 251.6 27.6 208 548-768 4-237 (379)
72 3dwl_C Actin-related protein 2 100.0 1.6E-27 5.5E-32 259.3 21.3 275 475-768 26-376 (377)
73 1p22_A F-BOX/WD-repeat protein 100.0 3.3E-26 1.1E-30 255.8 32.3 234 505-768 142-411 (435)
74 4aez_A CDC20, WD repeat-contai 100.0 6.3E-26 2.2E-30 250.8 34.2 224 506-768 103-333 (401)
75 3mmy_A MRNA export factor; mRN 99.9 3.3E-26 1.1E-30 245.6 28.9 220 544-768 28-301 (368)
76 3zwl_B Eukaryotic translation 99.9 7.8E-26 2.7E-30 242.7 31.8 220 546-768 23-301 (369)
77 2ovr_B FBW7, F-BOX/WD repeat p 99.9 1.6E-25 5.5E-30 250.5 35.2 266 474-768 131-439 (445)
78 2aq5_A Coronin-1A; WD40 repeat 99.9 2.9E-26 1E-30 253.1 28.5 265 474-768 49-339 (402)
79 3f3f_A Nucleoporin SEH1; struc 99.9 4.8E-26 1.6E-30 240.9 29.0 204 550-768 6-246 (351)
80 3jro_A Fusion protein of prote 99.9 1.5E-26 5.2E-31 277.9 28.1 242 499-768 14-282 (753)
81 2ovr_B FBW7, F-BOX/WD repeat p 99.9 2.2E-25 7.5E-30 249.4 35.6 233 505-768 128-388 (445)
82 3mmy_A MRNA export factor; mRN 99.9 6.7E-26 2.3E-30 243.2 30.0 227 506-767 54-342 (368)
83 1yfq_A Cell cycle arrest prote 99.9 1.7E-26 5.8E-31 246.7 25.2 233 503-768 20-279 (342)
84 1pgu_A Actin interacting prote 99.9 1.5E-25 5E-30 258.8 34.9 252 497-768 67-363 (615)
85 3dm0_A Maltose-binding peripla 99.9 4.5E-26 1.5E-30 270.6 30.8 205 546-768 373-589 (694)
86 3k26_A Polycomb protein EED; W 99.9 3E-26 1E-30 246.1 25.6 218 550-768 13-315 (366)
87 4aow_A Guanine nucleotide-bind 99.9 2.3E-25 7.9E-30 237.4 32.2 207 544-768 27-243 (340)
88 1k8k_C P40, ARP2/3 complex 41 99.9 8.6E-26 3E-30 243.8 29.1 216 551-768 4-271 (372)
89 3v7d_B Cell division control p 99.9 7.1E-25 2.4E-29 245.8 36.9 267 474-767 134-459 (464)
90 4e54_B DNA damage-binding prot 99.9 8E-27 2.7E-31 261.3 20.9 203 550-768 114-324 (435)
91 3gre_A Serine/threonine-protei 99.9 2E-26 6.8E-31 256.4 24.0 256 496-768 65-356 (437)
92 3odt_A Protein DOA1; ubiquitin 99.9 5E-25 1.7E-29 231.6 33.1 218 544-768 7-252 (313)
93 3sfz_A APAF-1, apoptotic pepti 99.9 1.7E-25 5.7E-30 281.7 34.0 275 474-768 629-1031(1249)
94 3dw8_B Serine/threonine-protei 99.9 1.9E-25 6.4E-30 248.1 29.8 267 497-767 96-442 (447)
95 3ei3_B DNA damage-binding prot 99.9 2.8E-25 9.4E-30 242.8 30.7 208 544-768 62-279 (383)
96 1pgu_A Actin interacting prote 99.9 3.3E-25 1.1E-29 255.8 32.8 236 497-768 21-280 (615)
97 4gq1_A NUP37; propeller, trans 99.9 1.8E-26 6E-31 255.6 21.2 232 502-764 97-383 (393)
98 1r5m_A SIR4-interacting protei 99.9 5.4E-25 1.9E-29 240.9 31.5 214 552-768 42-358 (425)
99 1sq9_A Antiviral protein SKI8; 99.9 1.6E-25 5.5E-30 244.6 27.0 221 545-768 6-319 (397)
100 3i2n_A WD repeat-containing pr 99.9 1.6E-25 5.6E-30 239.8 25.0 219 549-768 12-288 (357)
101 3lrv_A PRE-mRNA-splicing facto 99.9 1.2E-25 4E-30 243.3 23.0 226 503-768 45-289 (343)
102 3mkq_A Coatomer beta'-subunit; 99.9 1.7E-24 5.8E-29 259.6 35.2 272 476-768 29-383 (814)
103 1l0q_A Surface layer protein; 99.9 9E-24 3.1E-28 230.8 35.3 239 507-768 3-272 (391)
104 2j04_A TAU60, YPL007P, hypothe 99.9 1.1E-24 3.8E-29 248.9 28.0 243 494-768 15-294 (588)
105 2vdu_B TRNA (guanine-N(7)-)-me 99.9 3.8E-24 1.3E-28 240.4 31.9 217 551-768 98-336 (450)
106 3lrv_A PRE-mRNA-splicing facto 99.9 1.2E-24 4.2E-29 235.3 26.7 261 473-767 49-329 (343)
107 1yfq_A Cell cycle arrest prote 99.9 8.7E-25 3E-29 233.4 24.8 246 475-763 26-315 (342)
108 2w18_A PALB2, fancn, partner a 99.9 1.9E-24 6.4E-29 233.5 26.3 198 552-768 108-354 (356)
109 2oaj_A Protein SNI1; WD40 repe 99.9 4.6E-24 1.6E-28 261.4 31.9 246 497-768 20-309 (902)
110 4a11_B DNA excision repair pro 99.9 3.8E-24 1.3E-28 233.2 27.7 214 548-768 36-273 (408)
111 1p22_A F-BOX/WD-repeat protein 99.9 1E-23 3.5E-28 235.6 30.7 209 548-768 126-362 (435)
112 3jro_A Fusion protein of prote 99.9 1.5E-24 5.1E-29 260.6 25.3 207 549-768 3-235 (753)
113 2xyi_A Probable histone-bindin 99.9 1.8E-24 6.2E-29 241.9 24.0 206 548-768 121-350 (430)
114 2vdu_B TRNA (guanine-N(7)-)-me 99.9 1E-23 3.6E-28 236.8 29.2 231 505-767 113-387 (450)
115 3bws_A Protein LP49; two-domai 99.9 5.2E-23 1.8E-27 228.0 32.5 254 499-768 127-429 (433)
116 2oaj_A Protein SNI1; WD40 repe 99.9 2.5E-23 8.5E-28 254.9 30.8 207 552-768 14-239 (902)
117 3bws_A Protein LP49; two-domai 99.9 5E-23 1.7E-27 228.1 28.0 221 546-768 114-387 (433)
118 4ggc_A P55CDC, cell division c 99.9 2.3E-22 8E-27 212.0 30.8 206 557-768 27-270 (318)
119 4gq1_A NUP37; propeller, trans 99.9 1.3E-23 4.6E-28 232.4 21.0 215 553-768 87-345 (393)
120 3vu4_A KMHSV2; beta-propeller 99.9 1.7E-22 5.8E-27 220.4 29.1 245 497-768 22-333 (355)
121 4h5i_A Guanine nucleotide-exch 99.9 2.9E-22 9.8E-27 219.8 28.4 193 500-714 139-344 (365)
122 3vu4_A KMHSV2; beta-propeller 99.9 1.5E-22 5E-27 220.9 25.8 200 548-768 12-268 (355)
123 2j04_A TAU60, YPL007P, hypothe 99.9 5.6E-23 1.9E-27 234.9 22.5 228 503-760 94-350 (588)
124 4gga_A P55CDC, cell division c 99.9 3.8E-21 1.3E-25 213.9 34.9 220 480-720 123-360 (420)
125 1l0q_A Surface layer protein; 99.9 8.7E-21 3E-25 207.1 28.6 198 568-768 3-230 (391)
126 2w18_A PALB2, fancn, partner a 99.9 8.6E-21 2.9E-25 204.9 24.0 160 548-711 171-355 (356)
127 1nir_A Nitrite reductase; hemo 99.9 5.1E-20 1.7E-24 213.2 30.5 242 505-768 148-455 (543)
128 2hqs_A Protein TOLB; TOLB, PAL 99.9 5.9E-20 2E-24 205.1 29.6 199 549-768 172-384 (415)
129 2ojh_A Uncharacterized protein 99.8 2E-19 6.9E-24 185.9 23.5 222 510-768 16-255 (297)
130 3u4y_A Uncharacterized protein 99.8 4.9E-18 1.7E-22 180.9 32.0 242 505-768 9-301 (331)
131 2hqs_A Protein TOLB; TOLB, PAL 99.8 4.4E-19 1.5E-23 198.1 23.0 200 549-768 111-341 (415)
132 1nir_A Nitrite reductase; hemo 99.8 9.9E-18 3.4E-22 194.0 33.4 274 476-768 153-511 (543)
133 1ri6_A Putative isomerase YBHE 99.8 6.5E-18 2.2E-22 179.5 28.8 238 499-768 42-305 (343)
134 2ojh_A Uncharacterized protein 99.8 2.7E-18 9.4E-23 177.3 22.9 230 497-762 44-293 (297)
135 2oit_A Nucleoporin 214KDA; NH2 99.8 2.9E-18 9.9E-23 192.9 22.3 205 502-714 44-279 (434)
136 1pby_B Quinohemoprotein amine 99.8 2.4E-17 8.3E-22 174.7 27.1 238 507-768 2-307 (337)
137 3vgz_A Uncharacterized protein 99.8 1.4E-16 4.9E-21 170.3 32.7 185 558-761 143-334 (353)
138 1ri6_A Putative isomerase YBHE 99.8 4.8E-17 1.6E-21 172.8 28.7 233 508-768 7-259 (343)
139 2oit_A Nucleoporin 214KDA; NH2 99.8 1.2E-18 4E-23 196.1 16.3 202 555-768 36-275 (434)
140 1jmx_B Amine dehydrogenase; ox 99.8 3.9E-17 1.3E-21 174.2 25.8 224 502-768 7-322 (349)
141 3hfq_A Uncharacterized protein 99.8 1.3E-16 4.5E-21 171.6 29.8 238 500-767 45-313 (347)
142 3vgz_A Uncharacterized protein 99.8 2.1E-16 7.1E-21 169.1 27.8 210 556-768 41-300 (353)
143 2ecf_A Dipeptidyl peptidase IV 99.7 3.7E-17 1.3E-21 194.4 22.6 209 555-767 36-363 (741)
144 2ecf_A Dipeptidyl peptidase IV 99.7 1.1E-16 3.7E-21 190.4 26.6 207 557-768 110-410 (741)
145 3u4y_A Uncharacterized protein 99.7 1.7E-16 5.9E-21 168.9 25.3 206 561-768 3-249 (331)
146 1xfd_A DIP, dipeptidyl aminope 99.7 1.2E-16 4E-21 189.4 23.5 243 503-768 25-390 (723)
147 3scy_A Hypothetical bacterial 99.7 3.8E-15 1.3E-19 161.2 33.0 237 499-767 54-333 (361)
148 2z3z_A Dipeptidyl aminopeptida 99.7 3E-16 1E-20 185.7 23.8 215 551-768 116-432 (706)
149 3scy_A Hypothetical bacterial 99.7 6.6E-15 2.3E-19 159.4 29.2 202 554-768 48-288 (361)
150 1pby_B Quinohemoprotein amine 99.7 2.9E-15 9.9E-20 158.6 25.7 196 568-768 2-266 (337)
151 3hfq_A Uncharacterized protein 99.7 6E-15 2.1E-19 158.6 27.5 206 553-768 37-268 (347)
152 3o4h_A Acylamino-acid-releasin 99.7 5.7E-16 2E-20 179.5 19.7 209 555-768 21-273 (582)
153 1k32_A Tricorn protease; prote 99.7 2.9E-15 1E-19 186.0 26.5 188 499-710 300-499 (1045)
154 1jof_A Carboxy-CIS,CIS-muconat 99.7 7.5E-15 2.6E-19 160.1 25.5 239 499-768 44-338 (365)
155 1xfd_A DIP, dipeptidyl aminope 99.7 3.9E-16 1.3E-20 184.9 16.2 209 557-768 18-341 (723)
156 1k32_A Tricorn protease; prote 99.7 4E-15 1.4E-19 184.9 25.0 193 553-768 293-499 (1045)
157 3pe7_A Oligogalacturonate lyas 99.6 2.5E-14 8.7E-19 155.5 27.2 249 500-767 41-378 (388)
158 3fvz_A Peptidyl-glycine alpha- 99.6 7.8E-14 2.7E-18 150.1 29.3 213 555-768 23-319 (329)
159 2z3z_A Dipeptidyl aminopeptida 99.6 4.7E-15 1.6E-19 175.4 21.4 198 555-768 81-339 (706)
160 1jof_A Carboxy-CIS,CIS-muconat 99.6 3.6E-14 1.2E-18 154.8 26.0 207 554-768 38-288 (365)
161 1jmx_B Amine dehydrogenase; ox 99.6 8.9E-15 3E-19 155.8 20.0 203 560-768 4-281 (349)
162 1z68_A Fibroblast activation p 99.6 1.3E-14 4.3E-19 172.3 21.0 241 505-768 26-388 (719)
163 1q7f_A NHL, brain tumor CG1071 99.6 7.5E-13 2.6E-17 138.3 31.9 234 500-768 35-277 (286)
164 4a5s_A Dipeptidyl peptidase 4 99.6 7.6E-14 2.6E-18 166.9 23.9 228 505-767 27-349 (740)
165 4a5s_A Dipeptidyl peptidase 4 99.6 1.8E-14 6.2E-19 172.3 17.7 207 556-768 17-291 (740)
166 3o4h_A Acylamino-acid-releasin 99.6 9.6E-14 3.3E-18 160.7 23.2 182 558-768 112-312 (582)
167 3pe7_A Oligogalacturonate lyas 99.6 2.5E-13 8.4E-18 147.7 23.3 203 548-768 23-270 (388)
168 1z68_A Fibroblast activation p 99.5 1.4E-14 4.7E-19 172.0 13.0 203 560-768 20-284 (719)
169 2dg1_A DRP35, lactonase; beta 99.5 3E-12 1E-16 136.6 27.4 210 548-768 37-260 (333)
170 2oiz_A Aromatic amine dehydrog 99.5 1.2E-12 4.1E-17 143.2 21.5 211 550-768 46-331 (361)
171 3azo_A Aminopeptidase; POP fam 99.5 7.3E-13 2.5E-17 155.4 20.8 196 560-767 81-319 (662)
172 3e5z_A Putative gluconolactona 99.5 1E-11 3.5E-16 130.6 26.1 219 503-766 36-282 (296)
173 3c5m_A Oligogalacturonate lyas 99.5 1.2E-12 4.3E-17 141.9 19.3 208 558-767 83-378 (396)
174 1rwi_B Serine/threonine-protei 99.5 8.3E-12 2.8E-16 128.6 24.6 194 556-768 67-261 (270)
175 3azo_A Aminopeptidase; POP fam 99.5 2.5E-12 8.6E-17 150.8 23.3 194 554-767 128-363 (662)
176 2dg1_A DRP35, lactonase; beta 99.5 3.6E-11 1.2E-15 128.2 29.9 228 502-761 52-300 (333)
177 1q7f_A NHL, brain tumor CG1071 99.5 1.5E-11 5.1E-16 128.4 26.0 196 553-768 27-235 (286)
178 3no2_A Uncharacterized protein 99.4 3.3E-11 1.1E-15 126.9 27.8 189 505-719 4-201 (276)
179 3c5m_A Oligogalacturonate lyas 99.4 4.4E-13 1.5E-17 145.5 13.3 194 557-768 37-270 (396)
180 2gop_A Trilobed protease; beta 99.4 1.1E-11 3.9E-16 132.5 22.4 145 556-710 59-250 (347)
181 3e5z_A Putative gluconolactona 99.4 3.6E-11 1.2E-15 126.4 24.0 199 550-768 22-243 (296)
182 2xdw_A Prolyl endopeptidase; a 99.4 4.1E-11 1.4E-15 142.5 25.8 194 558-768 173-411 (710)
183 2xdw_A Prolyl endopeptidase; a 99.4 2.3E-11 8E-16 144.6 23.3 198 554-767 123-362 (710)
184 1qks_A Cytochrome CD1 nitrite 99.4 4.6E-10 1.6E-14 130.3 33.3 190 506-717 167-377 (567)
185 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 1.5E-10 5.1E-15 121.7 26.5 194 554-768 69-296 (314)
186 2oiz_A Aromatic amine dehydrog 99.4 1.5E-10 5.2E-15 126.4 27.3 219 499-753 54-360 (361)
187 3dsm_A Uncharacterized protein 99.4 1.1E-10 3.6E-15 125.7 25.5 222 506-768 54-299 (328)
188 2z2n_A Virginiamycin B lyase; 99.3 1.6E-09 5.3E-14 112.5 32.4 195 554-768 55-252 (299)
189 1xip_A Nucleoporin NUP159; bet 99.3 5.3E-11 1.8E-15 131.4 20.3 178 557-759 39-232 (388)
190 2bkl_A Prolyl endopeptidase; m 99.3 3.2E-11 1.1E-15 143.1 19.5 196 553-767 118-345 (695)
191 2gop_A Trilobed protease; beta 99.3 1.3E-10 4.5E-15 124.2 22.3 178 558-767 106-327 (347)
192 1qks_A Cytochrome CD1 nitrite 99.3 3.2E-09 1.1E-13 123.2 34.6 252 499-768 201-535 (567)
193 2bkl_A Prolyl endopeptidase; m 99.3 6.4E-11 2.2E-15 140.5 20.9 229 501-768 127-394 (695)
194 3no2_A Uncharacterized protein 99.3 1.6E-10 5.4E-15 121.7 21.2 180 566-768 4-192 (276)
195 1rwi_B Serine/threonine-protei 99.3 2.5E-10 8.7E-15 117.4 21.2 192 557-768 25-219 (270)
196 2mad_H Methylamine dehydrogena 99.3 2.8E-09 9.5E-14 117.2 30.2 202 560-768 70-347 (373)
197 2z2n_A Virginiamycin B lyase; 99.3 8.3E-09 2.8E-13 107.0 32.4 191 554-766 97-291 (299)
198 2qc5_A Streptogramin B lactona 99.2 1.3E-08 4.3E-13 105.7 32.6 195 553-768 59-257 (300)
199 3dsm_A Uncharacterized protein 99.2 6.2E-10 2.1E-14 119.7 23.2 190 557-768 45-250 (328)
200 3fvz_A Peptidyl-glycine alpha- 99.2 2.1E-09 7E-14 115.4 27.0 163 553-719 88-283 (329)
201 3g4e_A Regucalcin; six bladed 99.2 5.9E-09 2E-13 110.1 29.8 215 506-760 25-261 (297)
202 1yr2_A Prolyl oligopeptidase; 99.2 5.6E-10 1.9E-14 133.5 21.8 195 554-767 161-389 (741)
203 1pjx_A Dfpase, DIISOPROPYLFLUO 99.2 5.1E-09 1.7E-13 110.0 26.6 200 553-768 15-253 (314)
204 3dr2_A Exported gluconolactona 99.2 5.9E-09 2E-13 110.4 26.5 208 551-766 40-302 (305)
205 3sjl_D Methylamine dehydrogena 99.1 5.2E-09 1.8E-13 115.2 24.6 214 548-768 72-360 (386)
206 2ghs_A AGR_C_1268P; regucalcin 99.1 2.5E-08 8.5E-13 107.0 29.3 182 556-760 90-291 (326)
207 3hrp_A Uncharacterized protein 99.1 1.2E-08 4.2E-13 113.4 26.9 203 561-767 176-406 (409)
208 2qc5_A Streptogramin B lactona 99.1 5E-08 1.7E-12 101.1 29.2 197 552-768 16-215 (300)
209 1xip_A Nucleoporin NUP159; bet 99.1 1.3E-09 4.4E-14 120.3 17.0 177 501-701 44-232 (388)
210 3hrp_A Uncharacterized protein 99.1 9.4E-09 3.2E-13 114.3 23.5 202 556-768 131-351 (409)
211 3g4e_A Regucalcin; six bladed 99.1 7.9E-08 2.7E-12 101.4 28.9 202 552-768 9-226 (297)
212 1yr2_A Prolyl oligopeptidase; 99.1 6E-09 2E-13 124.5 22.1 193 558-768 211-438 (741)
213 3iuj_A Prolyl endopeptidase; h 99.0 4.8E-09 1.7E-13 124.5 20.1 197 553-768 126-356 (693)
214 3c75_H MADH, methylamine dehyd 99.0 1.2E-08 4.2E-13 113.9 21.7 214 548-768 112-399 (426)
215 3iuj_A Prolyl endopeptidase; h 99.0 1.2E-08 4E-13 121.2 22.7 189 559-768 178-402 (693)
216 2ghs_A AGR_C_1268P; regucalcin 99.0 1.6E-07 5.4E-12 100.7 28.0 192 558-768 51-257 (326)
217 2qe8_A Uncharacterized protein 99.0 2.1E-08 7E-13 108.4 19.7 205 556-768 17-275 (343)
218 2ece_A 462AA long hypothetical 98.9 2.6E-07 9E-12 102.8 25.7 241 504-759 94-399 (462)
219 2hz6_A Endoplasmic reticulum t 98.9 2.5E-10 8.5E-15 125.3 0.7 144 566-717 8-153 (369)
220 2mad_H Methylamine dehydrogena 98.9 6.9E-07 2.4E-11 98.0 27.7 146 563-716 28-198 (373)
221 3sjl_D Methylamine dehydrogena 98.9 1.3E-07 4.5E-12 104.0 21.5 148 561-713 38-208 (386)
222 2qe8_A Uncharacterized protein 98.8 1.5E-07 5E-12 101.6 20.8 194 553-762 64-312 (343)
223 1mda_H Methylamine dehydrogena 98.8 7.1E-08 2.4E-12 105.8 16.7 194 548-768 59-343 (368)
224 2hz6_A Endoplasmic reticulum t 98.8 1.9E-09 6.4E-14 118.2 3.0 184 505-717 8-196 (369)
225 3nol_A Glutamine cyclotransfer 98.7 1.9E-06 6.3E-11 89.4 23.2 199 546-760 32-244 (262)
226 3q7m_A Lipoprotein YFGL, BAMB; 98.7 1.1E-05 3.8E-10 87.3 29.8 193 566-768 102-334 (376)
227 1kb0_A Quinohemoprotein alcoho 98.7 7.8E-07 2.7E-11 105.4 22.0 193 576-768 189-504 (677)
228 3c75_H MADH, methylamine dehyd 98.7 9.5E-07 3.3E-11 98.6 20.5 146 565-716 82-251 (426)
229 2iwa_A Glutamine cyclotransfer 98.6 7.7E-06 2.6E-10 85.4 25.9 207 545-766 9-232 (266)
230 2ece_A 462AA long hypothetical 98.6 1.8E-06 6.3E-11 96.0 22.2 197 565-768 93-349 (462)
231 1yiq_A Quinohemoprotein alcoho 98.6 2.1E-06 7.1E-11 101.9 24.2 192 576-768 182-502 (689)
232 1yiq_A Quinohemoprotein alcoho 98.6 4.5E-06 1.5E-10 99.0 26.5 160 559-718 238-510 (689)
233 3q7m_A Lipoprotein YFGL, BAMB; 98.6 5.5E-06 1.9E-10 89.7 25.2 192 567-768 143-375 (376)
234 3hxj_A Pyrrolo-quinoline quino 98.6 2.8E-06 9.4E-11 89.5 21.0 185 554-767 135-320 (330)
235 3dr2_A Exported gluconolactona 98.6 3.6E-06 1.2E-10 88.8 21.6 147 557-710 132-303 (305)
236 1kb0_A Quinohemoprotein alcoho 98.5 1.2E-05 3.9E-10 95.3 26.4 161 559-719 246-513 (677)
237 1fwx_A Nitrous oxide reductase 98.5 3.9E-06 1.3E-10 96.4 20.5 196 566-768 100-358 (595)
238 1fwx_A Nitrous oxide reductase 98.5 6.1E-07 2.1E-11 103.0 13.4 155 556-713 134-361 (595)
239 1npe_A Nidogen, entactin; glyc 98.5 4.8E-05 1.6E-09 78.3 26.8 156 557-714 37-199 (267)
240 3mbr_X Glutamine cyclotransfer 98.5 2.4E-05 8.1E-10 80.4 23.9 198 546-760 10-223 (243)
241 2fp8_A Strictosidine synthase; 98.5 7.2E-05 2.5E-09 79.4 28.8 194 557-768 81-310 (322)
242 1npe_A Nidogen, entactin; glyc 98.5 0.00013 4.6E-09 74.9 29.6 159 556-717 79-242 (267)
243 3nok_A Glutaminyl cyclase; bet 98.5 4.9E-06 1.7E-10 86.3 17.8 187 558-760 57-254 (268)
244 2p4o_A Hypothetical protein; p 98.4 0.00012 4.1E-09 77.2 28.1 189 556-761 72-278 (306)
245 2fp8_A Strictosidine synthase; 98.4 6.4E-05 2.2E-09 79.7 25.7 154 557-713 20-216 (322)
246 1mda_H Methylamine dehydrogena 98.3 2.9E-06 1E-10 92.9 13.7 75 646-720 269-353 (368)
247 3hxj_A Pyrrolo-quinoline quino 98.3 5.5E-06 1.9E-10 87.2 14.4 93 610-710 108-201 (330)
248 1kv9_A Type II quinohemoprotei 98.3 3.8E-05 1.3E-09 90.7 22.4 150 566-717 116-337 (668)
249 2p4o_A Hypothetical protein; p 98.2 0.00054 1.8E-08 72.2 27.7 203 545-768 22-239 (306)
250 3qqz_A Putative uncharacterize 98.2 0.0017 5.8E-08 67.2 30.2 209 549-767 20-249 (255)
251 3amr_A 3-phytase; beta-propell 98.1 0.00025 8.5E-09 76.5 22.8 191 566-768 39-260 (355)
252 2iwa_A Glutamine cyclotransfer 98.1 0.00017 5.8E-09 75.2 20.4 128 587-719 9-141 (266)
253 2ad6_A Methanol dehydrogenase 98.1 0.00019 6.5E-09 83.1 23.0 199 568-768 161-491 (571)
254 3tc9_A Hypothetical hydrolase; 98.1 0.00041 1.4E-08 77.3 24.2 154 557-712 138-300 (430)
255 1kv9_A Type II quinohemoprotei 98.0 0.00016 5.3E-09 85.4 20.3 161 559-719 233-494 (668)
256 3v65_B Low-density lipoprotein 98.0 0.00095 3.2E-08 73.2 25.3 158 555-713 115-277 (386)
257 3v64_C Agrin; beta propeller, 98.0 0.0015 5.3E-08 70.4 26.5 156 556-713 73-234 (349)
258 1ijq_A LDL receptor, low-densi 98.0 0.0041 1.4E-07 66.0 29.2 157 555-713 29-195 (316)
259 2xe4_A Oligopeptidase B; hydro 98.0 0.00019 6.4E-09 85.9 19.5 152 557-712 175-353 (751)
260 1ijq_A LDL receptor, low-densi 97.9 0.0042 1.4E-07 65.9 28.0 137 576-713 9-152 (316)
261 4a2l_A BT_4663, two-component 97.9 0.0078 2.7E-07 72.0 33.4 206 555-767 262-522 (795)
262 1flg_A Protein (quinoprotein e 97.9 0.0019 6.5E-08 74.8 26.9 199 569-768 170-513 (582)
263 3nok_A Glutaminyl cyclase; bet 97.9 0.00036 1.2E-08 72.4 18.2 125 588-719 44-170 (268)
264 1w6s_A Methanol dehydrogenase 97.9 0.00082 2.8E-08 78.2 23.1 193 575-768 180-500 (599)
265 3p5b_L Low density lipoprotein 97.9 0.0056 1.9E-07 67.4 28.8 160 554-714 110-278 (400)
266 4a2l_A BT_4663, two-component 97.9 0.0092 3.2E-07 71.4 32.6 150 555-715 405-573 (795)
267 3v64_C Agrin; beta propeller, 97.9 0.0043 1.5E-07 66.9 26.6 153 557-713 35-191 (349)
268 3nol_A Glutamine cyclotransfer 97.9 0.00048 1.6E-08 71.3 17.8 126 588-719 32-161 (262)
269 2ad6_A Methanol dehydrogenase 97.8 0.0011 3.9E-08 76.5 21.2 158 560-718 239-499 (571)
270 1k3i_A Galactose oxidase precu 97.7 0.002 6.9E-08 75.6 23.1 76 555-630 242-325 (656)
271 3v65_B Low-density lipoprotein 97.7 0.0057 1.9E-07 66.9 25.2 152 558-713 79-234 (386)
272 4hw6_A Hypothetical protein, I 97.7 0.0032 1.1E-07 70.2 23.4 117 554-671 180-303 (433)
273 3mbr_X Glutamine cyclotransfer 97.7 0.0024 8.2E-08 65.4 20.1 125 588-719 10-139 (243)
274 1k3i_A Galactose oxidase precu 97.7 0.00022 7.7E-09 83.7 13.2 115 560-676 190-327 (656)
275 3qqz_A Putative uncharacterize 97.6 0.012 4.2E-07 60.7 24.5 154 556-711 70-251 (255)
276 2xbg_A YCF48-like protein; pho 97.6 0.013 4.5E-07 62.3 25.7 206 542-768 108-319 (327)
277 4hw6_A Hypothetical protein, I 97.6 0.0045 1.5E-07 69.0 22.5 153 557-712 140-303 (433)
278 3sov_A LRP-6, low-density lipo 97.6 0.012 4.1E-07 62.7 24.8 155 557-713 36-197 (318)
279 1flg_A Protein (quinoprotein e 97.6 0.0044 1.5E-07 71.8 23.0 159 560-719 250-522 (582)
280 3p5b_L Low density lipoprotein 97.6 0.02 6.7E-07 63.0 26.5 143 569-713 85-234 (400)
281 3m0c_C LDL receptor, low-densi 97.6 0.02 6.7E-07 68.7 28.2 160 554-714 422-590 (791)
282 3kya_A Putative phosphatase; s 97.5 0.0075 2.6E-07 68.2 23.0 154 557-711 140-339 (496)
283 3v9f_A Two-component system se 97.5 0.0097 3.3E-07 71.0 25.4 192 555-768 362-565 (781)
284 3sov_A LRP-6, low-density lipo 97.5 0.0053 1.8E-07 65.4 20.8 137 576-713 12-154 (318)
285 2p9w_A MAL S 1 allergenic prot 97.5 0.0055 1.9E-07 65.5 20.5 164 593-768 8-212 (334)
286 2p9w_A MAL S 1 allergenic prot 97.5 0.0069 2.3E-07 64.7 20.9 161 551-713 8-215 (334)
287 3v9f_A Two-component system se 97.5 0.031 1.1E-06 66.6 29.2 153 554-714 405-569 (781)
288 1w6s_A Methanol dehydrogenase 97.5 0.0058 2E-07 71.0 21.5 151 567-719 62-293 (599)
289 2xe4_A Oligopeptidase B; hydro 97.4 0.002 7E-08 76.9 17.5 112 599-713 175-304 (751)
290 4a0p_A LRP6, LRP-6, low-densit 97.4 0.034 1.2E-06 64.9 26.5 158 556-714 37-198 (628)
291 3tc9_A Hypothetical hydrolase; 97.3 0.0042 1.4E-07 69.1 17.1 151 599-767 138-297 (430)
292 3m0c_C LDL receptor, low-densi 97.3 0.045 1.5E-06 65.5 26.7 144 569-714 397-547 (791)
293 2ism_A Putative oxidoreductase 97.2 0.061 2.1E-06 57.9 24.0 142 556-701 31-220 (352)
294 2xzh_A Clathrin heavy chain 1; 97.1 0.33 1.1E-05 51.7 28.1 107 561-671 72-188 (365)
295 1n7d_A LDL receptor, low-densi 97.1 0.0015 5.1E-08 77.4 10.6 156 556-713 406-571 (699)
296 1bpo_A Protein (clathrin); cla 97.0 0.51 1.7E-05 52.0 28.8 108 560-671 70-187 (494)
297 3s94_A LRP-6, low-density lipo 96.9 0.11 3.8E-06 60.4 24.9 159 555-714 39-203 (619)
298 3sre_A PON1, serum paraoxonase 96.9 0.16 5.3E-06 55.0 24.0 188 557-761 51-287 (355)
299 3s94_A LRP-6, low-density lipo 96.8 0.18 6.3E-06 58.6 25.8 139 575-713 16-159 (619)
300 3amr_A 3-phytase; beta-propell 96.8 0.14 4.8E-06 55.1 22.6 139 576-717 98-268 (355)
301 4b8c_D Glucose-repressible alc 96.8 0.0004 1.4E-08 82.8 3.0 14 737-750 706-719 (727)
302 4a0p_A LRP6, LRP-6, low-densit 96.7 0.24 8.1E-06 57.7 25.5 144 569-714 8-156 (628)
303 2xbg_A YCF48-like protein; pho 96.7 0.23 7.8E-06 52.6 23.0 159 542-711 151-320 (327)
304 3a9g_A Putative uncharacterize 96.6 0.4 1.4E-05 51.5 24.2 190 556-759 73-330 (354)
305 2g8s_A Glucose/sorbosone dehyd 96.5 0.33 1.1E-05 52.1 23.0 144 557-702 19-216 (353)
306 3ii7_A Kelch-like protein 7; p 96.5 0.13 4.6E-06 53.3 19.1 144 566-714 55-226 (306)
307 2xn4_A Kelch-like protein 2; s 96.4 0.27 9.1E-06 50.8 20.8 145 566-715 61-231 (302)
308 1n7d_A LDL receptor, low-densi 96.4 0.021 7.1E-07 67.6 13.5 159 558-719 455-620 (699)
309 2vpj_A Kelch-like protein 12; 96.3 0.17 5.8E-06 52.3 18.8 145 566-715 62-233 (301)
310 3sre_A PON1, serum paraoxonase 96.3 0.56 1.9E-05 50.6 23.0 153 556-712 112-297 (355)
311 3pbp_A Nucleoporin NUP82; beta 96.2 0.22 7.4E-06 54.9 19.4 149 607-765 30-206 (452)
312 3kya_A Putative phosphatase; s 96.2 0.083 2.8E-06 59.7 16.4 162 599-766 140-336 (496)
313 3pbp_A Nucleoporin NUP82; beta 96.1 0.27 9.3E-06 54.1 19.2 142 565-709 30-208 (452)
314 3a9g_A Putative uncharacterize 96.0 0.23 7.7E-06 53.5 18.5 145 555-702 28-216 (354)
315 3iot_A Maltose-binding protein 95.9 0.007 2.4E-07 67.4 5.9 13 53-65 337-349 (449)
316 2vpj_A Kelch-like protein 12; 95.9 0.43 1.5E-05 49.1 19.2 143 566-714 112-279 (301)
317 3ei3_A DNA damage-binding prot 95.8 0.48 1.6E-05 59.1 22.6 170 578-767 808-995 (1158)
318 3s25_A Hypothetical 7-bladed b 95.7 0.53 1.8E-05 49.5 19.5 140 561-714 58-217 (302)
319 2xn4_A Kelch-like protein 2; s 95.7 0.43 1.5E-05 49.2 18.6 143 566-714 108-277 (302)
320 3das_A Putative oxidoreductase 95.7 0.52 1.8E-05 50.7 19.5 150 550-701 26-219 (347)
321 1bpo_A Protein (clathrin); cla 95.7 1.9 6.5E-05 47.6 23.8 157 556-714 151-332 (494)
322 2xzh_A Clathrin heavy chain 1; 95.7 1.6 5.4E-05 46.5 22.2 157 556-714 152-333 (365)
323 2be1_A Serine/threonine-protei 95.6 0.015 5.1E-07 62.5 6.8 143 568-710 11-181 (339)
324 1cru_A Protein (soluble quinop 95.5 0.6 2.1E-05 52.0 19.6 105 556-660 27-163 (454)
325 4asc_A Kelch repeat and BTB do 95.4 1.6 5.3E-05 45.3 21.8 150 559-714 38-222 (315)
326 3das_A Putative oxidoreductase 95.4 3.5 0.00012 44.1 28.8 188 555-759 79-326 (347)
327 3ott_A Two-component system se 95.4 3 0.0001 49.1 26.4 153 556-714 373-546 (758)
328 1zgk_A Kelch-like ECH-associat 95.3 0.72 2.5E-05 47.8 18.6 144 566-715 70-242 (308)
329 3ott_A Two-component system se 95.2 2 7E-05 50.6 24.5 149 556-715 63-222 (758)
330 3ii7_A Kelch-like protein 7; p 95.2 0.68 2.3E-05 47.8 18.1 145 566-715 101-274 (306)
331 1cru_A Protein (soluble quinop 95.2 1 3.4E-05 50.2 20.2 104 598-701 27-162 (454)
332 2uvk_A YJHT; unknown function, 94.8 1.3 4.3E-05 46.8 19.0 51 566-618 65-128 (357)
333 2ism_A Putative oxidoreductase 94.7 2.5 8.5E-05 45.0 21.3 191 555-759 74-333 (352)
334 2woz_A Kelch repeat and BTB do 94.6 2.8 9.7E-05 43.3 21.0 111 562-677 52-189 (318)
335 3ei3_A DNA damage-binding prot 94.3 15 0.0005 45.8 33.0 116 556-675 514-641 (1158)
336 1xi4_A Clathrin heavy chain; a 94.1 1.6 5.3E-05 54.9 19.5 196 500-720 71-296 (1630)
337 1zgk_A Kelch-like ECH-associat 94.0 0.93 3.2E-05 47.0 15.5 106 566-676 121-244 (308)
338 3s25_A Hypothetical 7-bladed b 93.8 3.4 0.00012 43.2 19.3 135 565-714 23-177 (302)
339 2g8s_A Glucose/sorbosone dehyd 93.8 0.56 1.9E-05 50.3 13.5 103 599-703 19-149 (353)
340 1tl2_A L10, protein (tachylect 93.6 0.12 4E-06 52.0 7.1 104 557-668 42-159 (236)
341 3iot_A Maltose-binding protein 93.2 0.027 9.3E-07 62.6 1.9 13 56-68 336-348 (449)
342 2zwa_A Leucine carboxyl methyl 93.0 3.3 0.00011 48.6 19.5 108 566-674 451-579 (695)
343 4asc_A Kelch repeat and BTB do 92.7 1.4 4.7E-05 45.7 14.3 107 566-677 98-226 (315)
344 1tl2_A L10, protein (tachylect 92.2 0.9 3.1E-05 45.6 11.1 140 608-764 3-156 (236)
345 2woz_A Kelch repeat and BTB do 91.7 2.2 7.4E-05 44.3 14.3 107 566-676 109-235 (318)
346 2uvk_A YJHT; unknown function, 91.6 2.7 9.4E-05 44.2 15.2 49 577-626 168-224 (357)
347 2zwa_A Leucine carboxyl methyl 91.2 7.1 0.00024 45.7 19.4 150 565-715 396-579 (695)
348 1xi4_A Clathrin heavy chain; a 90.3 3 0.0001 52.5 15.2 196 561-768 71-286 (1630)
349 1suu_A DNA gyrase subunit A; t 90.1 20 0.00069 37.4 22.2 191 565-767 6-227 (312)
350 3no0_A DNA gyrase subunit A; D 89.9 19 0.00065 36.9 19.6 157 556-715 24-198 (276)
351 3sbq_A Nitrous-oxide reductase 89.7 2 6.7E-05 48.8 11.9 122 578-701 299-453 (638)
352 3kci_A Probable E3 ubiquitin-p 88.7 28 0.00097 37.2 30.0 152 557-713 106-293 (389)
353 3sbq_A Nitrous-oxide reductase 88.5 8.9 0.00031 43.6 16.2 74 641-714 323-409 (638)
354 1uuj_A Platelet-activating fac 87.4 0.59 2E-05 39.6 4.4 31 11-41 12-42 (88)
355 3qhy_B Beta-lactamase inhibito 87.4 28 0.00095 35.6 20.8 143 557-713 64-207 (282)
356 3b7f_A Glycosyl hydrolase, BNR 86.0 39 0.0013 35.9 24.0 149 555-710 54-259 (394)
357 3kci_A Probable E3 ubiquitin-p 85.3 43 0.0015 35.8 25.4 150 558-712 55-240 (389)
358 2be1_A Serine/threonine-protei 85.2 2.2 7.5E-05 45.6 8.8 110 610-720 11-137 (339)
359 3uc1_A DNA gyrase subunit A; D 84.7 29 0.00099 36.5 17.3 155 556-713 95-279 (327)
360 3b7f_A Glycosyl hydrolase, BNR 84.2 46 0.0016 35.2 21.0 136 568-709 23-204 (394)
361 2xtc_A F-box-like/WD repeat-co 81.3 1 3.5E-05 38.3 3.3 32 11-42 7-38 (90)
362 1wp5_A Topoisomerase IV; broke 81.1 48 0.0017 34.7 17.2 191 565-766 3-220 (323)
363 2wg3_C Hedgehog-interacting pr 80.8 62 0.0021 35.7 18.8 104 557-660 15-158 (463)
364 3uc1_A DNA gyrase subunit A; D 80.3 61 0.0021 34.0 21.8 154 558-714 44-229 (327)
365 3l6v_A GYRA, DNA gyrase subuni 78.9 73 0.0025 34.1 21.1 149 564-714 4-181 (370)
366 4gq2_M Nucleoporin NUP120; bet 78.4 1.3E+02 0.0043 36.5 26.3 36 685-720 238-273 (950)
367 1zi0_A DNA gyrase subunit A; b 76.2 76 0.0026 32.8 20.8 191 566-767 2-222 (307)
368 3qhy_B Beta-lactamase inhibito 75.8 45 0.0015 34.0 14.8 142 557-712 25-167 (282)
369 2wg3_C Hedgehog-interacting pr 74.6 29 0.00099 38.4 13.7 105 598-702 14-158 (463)
370 4hvt_A Ritya.17583.B, post-pro 72.5 1.2E+02 0.0042 35.3 19.0 112 559-671 132-277 (711)
371 4gq2_M Nucleoporin NUP120; bet 72.0 58 0.002 39.5 16.6 38 556-593 236-273 (950)
372 4d9s_A UVB-resistance protein 71.5 1.1E+02 0.0038 32.6 28.4 149 556-713 121-305 (406)
373 1suu_A DNA gyrase subunit A; t 71.1 1E+02 0.0035 32.0 25.6 196 505-714 7-232 (312)
374 1sqj_A OXG-RCBH, oligoxylogluc 69.3 1.4E+02 0.0049 35.1 18.9 151 555-707 14-195 (789)
375 3q6k_A 43.2 kDa salivary prote 64.6 1.6E+02 0.0053 31.7 22.7 135 578-713 124-306 (381)
376 3no0_A DNA gyrase subunit A; D 62.6 1.4E+02 0.0047 30.4 19.4 156 555-713 67-246 (276)
377 1zi0_A DNA gyrase subunit A; b 61.8 1.5E+02 0.0051 30.5 21.5 153 558-713 44-226 (307)
378 1wp5_A Topoisomerase IV; broke 54.2 2.1E+02 0.0071 29.8 22.7 190 505-713 4-225 (323)
379 3q6k_A 43.2 kDa salivary prote 51.7 2.5E+02 0.0086 30.0 18.7 84 620-704 124-245 (381)
380 3l6v_A GYRA, DNA gyrase subuni 50.2 2.6E+02 0.0088 29.7 25.7 198 504-715 5-267 (370)
381 2cn3_A Xyloglucanase, beta-1,4 50.2 2.1E+02 0.0072 33.3 15.6 104 556-660 23-151 (737)
382 4a9v_A PHOX; hydrolase, beta-p 42.6 3.3E+02 0.011 31.0 14.7 61 641-701 476-549 (592)
383 4fhn_B Nucleoporin NUP120; pro 41.9 30 0.001 42.9 6.7 39 556-594 238-276 (1139)
384 1sqj_A OXG-RCBH, oligoxylogluc 41.6 3.4E+02 0.012 31.8 15.6 61 597-659 14-82 (789)
385 4fhn_B Nucleoporin NUP120; pro 40.3 2.1E+02 0.0073 35.2 14.1 39 642-681 239-277 (1139)
386 3zwu_A Alkaline phosphatase PH 38.8 79 0.0027 36.1 9.1 58 558-615 478-548 (592)
387 1zvt_A Topoisomerase IV subuni 38.4 2E+02 0.0069 28.8 11.3 145 611-767 4-159 (256)
388 3of7_A Regulator of chromosome 36.1 4.5E+02 0.015 28.4 22.1 108 598-712 148-284 (473)
389 4a9v_A PHOX; hydrolase, beta-p 36.0 1.2E+02 0.004 34.6 9.7 60 557-616 477-549 (592)
390 4d9s_A UVB-resistance protein 35.7 4.2E+02 0.014 28.0 29.2 149 556-713 68-253 (406)
391 1qb3_A Cyclin-dependent kinase 34.6 9.5 0.00033 35.0 0.4 11 25-35 13-23 (150)
392 3mvd_K Regulator of chromosome 32.7 4.6E+02 0.016 27.6 37.0 149 556-712 127-321 (423)
393 3f7f_A Nucleoporin NUP120; nuc 32.2 58 0.002 38.1 6.5 38 556-595 222-259 (729)
394 3zwu_A Alkaline phosphatase PH 31.5 1.1E+02 0.0038 34.9 8.7 59 600-659 478-549 (592)
395 3f7f_A Nucleoporin NUP120; nuc 27.3 7.9E+02 0.027 28.6 15.2 37 642-681 223-259 (729)
396 1zvt_A Topoisomerase IV subuni 26.6 4.8E+02 0.017 25.9 17.5 143 569-714 4-164 (256)
397 3hx6_A Type 4 fimbrial biogene 26.5 7.3E+02 0.025 27.9 19.3 147 568-715 86-286 (570)
398 3a0f_A Xyloglucanase; beta-pro 25.1 8.4E+02 0.029 28.2 18.1 149 554-704 19-203 (763)
399 2zux_A YESW protein; beta-prop 23.7 8.3E+02 0.028 27.6 19.7 45 637-681 360-409 (591)
400 2d68_A FOP, FGFR1OP; alpha hel 23.1 73 0.0025 26.4 3.8 31 10-40 19-49 (82)
401 2zux_A YESW protein; beta-prop 21.3 9.2E+02 0.031 27.2 17.7 41 554-594 177-246 (591)
402 2cn3_A Xyloglucanase, beta-1,4 20.9 9.8E+02 0.034 27.4 19.6 62 643-705 385-455 (737)
No 1
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=8.3e-34 Score=316.28 Aligned_cols=246 Identities=24% Similarity=0.452 Sum_probs=218.8
Q ss_pred ccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 004207 502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVL 581 (768)
Q Consensus 502 l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~V 581 (768)
+++...++++|+.|++|++|+..... ....+.+|.+.|.+++|+|++++|++|+.|++|+|
T Consensus 116 ~~p~~~~l~s~s~Dg~i~vwd~~~~~-------------------~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~i 176 (410)
T 1vyh_C 116 FHPVFSVMVSASEDATIKVWDYETGD-------------------FERTLKGHTDSVQDISFDHSGKLLASCSADMTIKL 176 (410)
T ss_dssp ECSSSSEEEEEESSSCEEEEETTTCC-------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCE
T ss_pred EcCCCCEEEEEeCCCeEEEEECCCCc-------------------EEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEE
Confidence 34456799999999999999764331 23567899999999999999999999999999999
Q ss_pred EECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeC
Q 004207 582 WCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 661 (768)
Q Consensus 582 Wdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~ 661 (768)
||+.+++++.++.+|...|.+++|+|++.+|++|+.|++|++||++++.. +..+.+|...|.+++|++++. +|++|+.
T Consensus 177 wd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~-~~~~~~h~~~v~~~~~~~~g~-~l~s~s~ 254 (410)
T 1vyh_C 177 WDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC-VKTFTGHREWVRMVRPNQDGT-LIASCSN 254 (410)
T ss_dssp EETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCE-EEEEECCSSCEEEEEECTTSS-EEEEEET
T ss_pred EeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE-EEEEeCCCccEEEEEECCCCC-EEEEEcC
Confidence 99999999999999999999999999999999999999999999998775 788899999999999999976 6779999
Q ss_pred CCcEEEEECCCCeeEEEEec-CCCeeEEEEecC--------------------CCEEEEEEcCCeEEEEECCCceEeeec
Q 004207 662 NSEIRYWSINNGSCAGVFKC-QSGATQMRFQPR--------------------LGRILAAAIENYISILDVETQVCRLKL 720 (768)
Q Consensus 662 Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~--------------------~~~llags~Dg~I~IwD~~t~~~~~~~ 720 (768)
|+.|++||++++.+...+.. ...|.+++|+|+ +.++++++.|+.|++||++++.+...+
T Consensus 255 D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~ 334 (410)
T 1vyh_C 255 DQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL 334 (410)
T ss_dssp TSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred CCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEE
Confidence 99999999999999888865 566999999996 568999999999999999987655433
Q ss_pred c-------------------------eeEEeecCCCceE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 721 Q-------------------------TLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 721 ~-------------------------~I~iwd~~~~~~~-~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
. .|++||+..++.+ .+.+|...|++++|+|++.+|++|+.||+|+|||
T Consensus 335 ~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~ 408 (410)
T 1vyh_C 335 VGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408 (410)
T ss_dssp ECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred ECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEe
Confidence 2 7999999877654 6779999999999999999999999999999997
No 2
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2e-33 Score=299.76 Aligned_cols=237 Identities=21% Similarity=0.313 Sum_probs=209.2
Q ss_pred ccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC
Q 004207 497 SAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD 576 (768)
Q Consensus 497 ~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~D 576 (768)
+....+++.+.+|++|+.|++|++|+.... ..+..+..|..+|.+++|+|++++|++|+.|
T Consensus 16 V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~-------------------~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d 76 (304)
T 2ynn_A 16 VKGIDFHPTEPWVLTTLYSGRVELWNYETQ-------------------VEVRSIQVTETPVRAGKFIARKNWIIVGSDD 76 (304)
T ss_dssp EEEEEECSSSSEEEEEETTSEEEEEETTTT-------------------EEEEEEECCSSCEEEEEEEGGGTEEEEEETT
T ss_pred eEEEEECCCCCEEEEEcCCCcEEEEECCCC-------------------ceeEEeeccCCcEEEEEEeCCCCEEEEECCC
Confidence 444556667889999999999999965332 2456778999999999999999999999999
Q ss_pred CcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEE
Q 004207 577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLL 656 (768)
Q Consensus 577 g~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lL 656 (768)
++|+|||+.+++.+..+.+|...|++++|+|++.+|++|+.|++|++||++++......+.+|...|.+++|+|.+..+|
T Consensus 77 ~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l 156 (304)
T 2ynn_A 77 FRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTF 156 (304)
T ss_dssp SEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEE
T ss_pred CEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEE
Confidence 99999999999999999999999999999999999999999999999999987776788999999999999999766688
Q ss_pred EEEeCCCcEEEEECCCCeeEEEEec--CCCeeEEEEec--CCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCc
Q 004207 657 CSCDNNSEIRYWSINNGSCAGVFKC--QSGATQMRFQP--RLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENK 732 (768)
Q Consensus 657 aSgs~Dg~I~iWDl~sg~~i~~~~~--~~~i~sl~fsp--~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~ 732 (768)
++|+.|++|++||++.+.....+.. ...+..+.|+| ++.+|++++.|+.|++||+++..+..
T Consensus 157 ~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~-------------- 222 (304)
T 2ynn_A 157 ASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVA-------------- 222 (304)
T ss_dssp EEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEE--------------
T ss_pred EEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccce--------------
Confidence 8999999999999998777666553 35688889876 66789999999999999998876543
Q ss_pred eEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 733 TLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 733 ~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
.+.+|...|.+++|+|++.+|++|+.||+|+|||
T Consensus 223 --~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd 256 (304)
T 2ynn_A 223 --TLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256 (304)
T ss_dssp --EEECCSSCEEEEEECSSSSEEEEEETTSCEEEEE
T ss_pred --eeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEE
Confidence 3458999999999999999999999999999997
No 3
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=7.5e-33 Score=300.08 Aligned_cols=261 Identities=20% Similarity=0.299 Sum_probs=223.6
Q ss_pred cccCCCCCceEEEEecCCC--------CcccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCcee
Q 004207 474 LQHNGASSKSLLMFGSDGM--------GSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTF 545 (768)
Q Consensus 474 l~~s~s~~~~~l~~~~~~~--------~~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~ 545 (768)
+..+++.+..+.+|..... +...+....+.+.+.++++|+.|+.|++|...... ...
T Consensus 69 ~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~---------------~~~ 133 (340)
T 1got_B 69 LLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTRE---------------GNV 133 (340)
T ss_dssp EEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCS---------------BSC
T ss_pred EEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCC---------------Ccc
Confidence 4566777888888876543 22233455677888999999999999999654321 122
Q ss_pred eEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004207 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (768)
Q Consensus 546 ~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWD 625 (768)
.....+.+|.+.|.++.|++++. |++++.|++|++||+.+++.+.++.+|...|.+++|+|++++|++|+.|++|++||
T Consensus 134 ~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd 212 (340)
T 1got_B 134 RVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD 212 (340)
T ss_dssp EEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred eeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEE
Confidence 34566789999999999998775 88999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecC---CCeeEEEEecCCCEEEEEEc
Q 004207 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ---SGATQMRFQPRLGRILAAAI 702 (768)
Q Consensus 626 l~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~---~~i~sl~fsp~~~~llags~ 702 (768)
++++.. +..+.+|...|.+++|+|++. +|++|+.|++|++||++++..+..+.+. ..|.+++|+|++.++++++.
T Consensus 213 ~~~~~~-~~~~~~h~~~v~~v~~~p~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~ 290 (340)
T 1got_B 213 VREGMC-RQTFTGHESDINAICFFPNGN-AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYD 290 (340)
T ss_dssp TTTCSE-EEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEET
T ss_pred CCCCee-EEEEcCCcCCEEEEEEcCCCC-EEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECC
Confidence 998765 788899999999999999976 6679999999999999999888877653 36899999999999999999
Q ss_pred CCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 703 ENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 703 Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
|+.|++||+.+.... ..+.+|...|++++|+|++.+|+||+.||.|+|||
T Consensus 291 d~~i~vwd~~~~~~~----------------~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 291 DFNCNVWDALKADRA----------------GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp TSEEEEEETTTCCEE----------------EEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCeEEEEEcccCcEe----------------eEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 999999998876543 23458999999999999999999999999999997
No 4
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=9.2e-33 Score=297.86 Aligned_cols=245 Identities=19% Similarity=0.253 Sum_probs=217.3
Q ss_pred CCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004207 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (768)
Q Consensus 505 ~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl 584 (768)
...+|++|+.|++|++|..... .......+.+|...|.+++|++++.++++++.|++|+|||+
T Consensus 47 ~~~~l~tgs~D~~v~vW~~~~~-----------------~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~ 109 (321)
T 3ow8_A 47 NSETVVTGSLDDLVKVWKWRDE-----------------RLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDL 109 (321)
T ss_dssp --CEEEEEETTSCEEEEEEETT-----------------EEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred CCCEEEEEcCCCCEEEEECCCC-----------------CeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence 3578999999999999965321 22344567899999999999999999999999999999999
Q ss_pred CCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCc
Q 004207 585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 664 (768)
Q Consensus 585 ~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~ 664 (768)
.+++.+..+..|...+.+++|+|++++|++++.|++|++||+++++. ...+..|...|.+++|+|+++ +|++|+.|+.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~-~~~~~~~~~~v~~~~~spdg~-~lasg~~dg~ 187 (321)
T 3ow8_A 110 ENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKK-EYSLDTRGKFILSIAYSPDGK-YLASGAIDGI 187 (321)
T ss_dssp TTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSE-EEEEECSSSCEEEEEECTTSS-EEEEEETTSC
T ss_pred CCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCce-eEEecCCCceEEEEEECCCCC-EEEEEcCCCe
Confidence 99999999999999999999999999999999999999999998775 667778899999999999987 6669999999
Q ss_pred EEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecc----------------------
Q 004207 665 IRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ---------------------- 721 (768)
Q Consensus 665 I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~---------------------- 721 (768)
|++||+++++++..+.. ...|.+++|+|++.+|++++.|+.|++||+++......+.
T Consensus 188 i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s 267 (321)
T 3ow8_A 188 INIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSS 267 (321)
T ss_dssp EEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred EEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEe
Confidence 99999999999998875 5679999999999999999999999999998765543322
Q ss_pred ---eeEEeecCCCceE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 722 ---TLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 722 ---~I~iwd~~~~~~~-~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
.|++||+.+++++ .+.+|...|.+++|+|++.+|++++.||.|+|||
T Consensus 268 ~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd 318 (321)
T 3ow8_A 268 SDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318 (321)
T ss_dssp TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred CCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEe
Confidence 7999999988766 6779999999999999999999999999999997
No 5
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.8e-32 Score=294.57 Aligned_cols=256 Identities=18% Similarity=0.269 Sum_probs=215.8
Q ss_pred ccCccccC-CCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeC
Q 004207 497 SAPNQLTD-MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH 575 (768)
Q Consensus 497 ~~~~~l~~-~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~ 575 (768)
+....+.+ ...++++|+.|++|++|...... ......+..+.+|...|.+++|+|++++|++|+.
T Consensus 20 V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~--------------~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~ 85 (319)
T 3frx_A 20 VTSLATSAGQPNLLLSASRDKTLISWKLTGDD--------------QKFGVPVRSFKGHSHIVQDCTLTADGAYALSASW 85 (319)
T ss_dssp EEEEEECSSCTTEEEEEETTSEEEEEEEEEET--------------TEEEEEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred EEEEEccCCCccEEEEecCCccEEEecCCCCC--------------ccccccceEEeCCcccEEEEEECCCCCEEEEEeC
Confidence 33334443 35799999999999999653211 1122456778999999999999999999999999
Q ss_pred CCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCC---
Q 004207 576 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK--- 652 (768)
Q Consensus 576 Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g--- 652 (768)
|++|+|||+.+++.+..+.+|...|.+++|+|++.+|++|+.|++|+|||++. ..+..+.+|...|.++.|+|..
T Consensus 86 D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~--~~~~~~~~h~~~v~~~~~~~~~~~~ 163 (319)
T 3frx_A 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG--QCLATLLGHNDWVSQVRVVPNEKAD 163 (319)
T ss_dssp TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS--CEEEEECCCSSCEEEEEECCC----
T ss_pred CCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC--CeEEEEeccCCcEEEEEEccCCCCC
Confidence 99999999999999999999999999999999999999999999999999974 3477888999999999999863
Q ss_pred --CeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecc--------
Q 004207 653 --EDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ-------- 721 (768)
Q Consensus 653 --~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~-------- 721 (768)
..++++++.|+.|++||++++++...+.. ...|.+++|+|++.+|++++.|+.|++||+.+......+.
T Consensus 164 ~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~ 243 (319)
T 3frx_A 164 DDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSL 243 (319)
T ss_dssp --CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECCSCEEEE
T ss_pred CCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEE
Confidence 33788999999999999999988887764 5679999999999999999999999999999876654432
Q ss_pred ---------------eeEEeecCCCceEE-e--------ccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 722 ---------------TLELWNMTENKTLT-L--------SAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 722 ---------------~I~iwd~~~~~~~~-l--------~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
.+++|++....... + ..|...|.+++|+|+|++|++|+.||.|+|||
T Consensus 244 ~~sp~~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd 314 (319)
T 3frx_A 244 AFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ 314 (319)
T ss_dssp EECSSSSEEEEEETTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EEcCCCCEEEEEcCCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEE
Confidence 57788877655442 1 23567899999999999999999999999996
No 6
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=3.6e-32 Score=289.35 Aligned_cols=250 Identities=24% Similarity=0.440 Sum_probs=219.0
Q ss_pred cCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCC
Q 004207 498 APNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDK 577 (768)
Q Consensus 498 ~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg 577 (768)
....+.+.+.++++|+.|+.|++|...+. .....+.+|...|.+++|+|++++|++|+.|+
T Consensus 27 ~~~~~s~~~~~l~s~~~dg~i~iw~~~~~-------------------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~ 87 (312)
T 4ery_A 27 SSVKFSPNGEWLASSSADKLIKIWGAYDG-------------------KFEKTISGHKLGISDVAWSSDSNLLVSASDDK 87 (312)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTC-------------------CEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEECCCCCEEEEeeCCCeEEEEeCCCc-------------------ccchhhccCCCceEEEEEcCCCCEEEEECCCC
Confidence 33444556789999999999999965332 23456789999999999999999999999999
Q ss_pred cEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEE
Q 004207 578 KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLC 657 (768)
Q Consensus 578 ~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLa 657 (768)
.|+|||+.+++++..+.+|...|.+++|+|++++|++|+.|++|++||+++++. +..+..|...|.+++|+|++. +|+
T Consensus 88 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~-~l~ 165 (312)
T 4ery_A 88 TLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGS-LIV 165 (312)
T ss_dssp EEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCE-EEEECCCSSCEEEEEECTTSS-EEE
T ss_pred EEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEE-EEEecCCCCcEEEEEEcCCCC-EEE
Confidence 999999999999999999999999999999999999999999999999998775 778888999999999999977 667
Q ss_pred EEeCCCcEEEEECCCCeeEEEEec--CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecc--------------
Q 004207 658 SCDNNSEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ-------------- 721 (768)
Q Consensus 658 Sgs~Dg~I~iWDl~sg~~i~~~~~--~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~-------------- 721 (768)
+++.|+.|++||+++++++..+.. ...+..++|+|++.++++++.|+.|++||+++..+...+.
T Consensus 166 ~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (312)
T 4ery_A 166 SSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFS 245 (312)
T ss_dssp EEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEE
T ss_pred EEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEE
Confidence 899999999999999988877643 4568899999999999999999999999998875443221
Q ss_pred --------------eeEEeecCCCceE-EeccCCCCeeEEEEeCCCCEEEEEE--CCCcEEEeC
Q 004207 722 --------------TLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 768 (768)
Q Consensus 722 --------------~I~iwd~~~~~~~-~l~~H~~~I~sla~spdg~~LaSgs--~DG~V~IWD 768 (768)
.|++||+.+++.+ .+.+|...|.+++|+|++.+|++++ .|+.|+||+
T Consensus 246 ~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~ 309 (312)
T 4ery_A 246 VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 309 (312)
T ss_dssp CSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEE
T ss_pred eCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEec
Confidence 7999999888766 6779999999999999999999997 699999995
No 7
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=2e-32 Score=298.89 Aligned_cols=230 Identities=19% Similarity=0.213 Sum_probs=193.5
Q ss_pred CCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004207 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (768)
Q Consensus 506 ~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~ 585 (768)
+..+++|+.|++|++|+...+. ........+.+|.+.|++|+|+|++++|++|+.|++|+|||+.
T Consensus 93 d~~l~~~s~dg~v~lWd~~~~~---------------~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~ 157 (344)
T 4gqb_B 93 ERGILVASDSGAVELWELDENE---------------TLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLA 157 (344)
T ss_dssp TTEEEEEETTSEEEEEEECTTS---------------SCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred CCeEEEEECCCEEEEEeccCCC---------------ceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECC
Confidence 3567899999999999764431 1112233456999999999999999999999999999999999
Q ss_pred CCeEEEEeccCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCCeeEEEe--ecCCCCeEEEEEeCCCCeEEEEEeCC
Q 004207 586 SFTVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSLRTF--TGHSTTVMSLDFHPSKEDLLCSCDNN 662 (768)
Q Consensus 586 t~~~~~tl~~h~~~V~sl~fspdg-~~LaTgs~DgtIrVWDl~t~~~~~~~~--~~h~~~V~slafsp~g~~lLaSgs~D 662 (768)
+++++.++.+|...|++++|++++ .+|++|+.|++|+|||+++++. ...+ ..|...+.+++|+|++..+|++|+.|
T Consensus 158 ~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~d 236 (344)
T 4gqb_B 158 QQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKP-ASQIGCSAPGYLPTSLAWHPQQSEVFVFGDEN 236 (344)
T ss_dssp TTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSC-EEECC----CCCEEEEEECSSCTTEEEEEETT
T ss_pred CCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccce-eeeeecceeeccceeeeecCCCCcceEEeccC
Confidence 999999999999999999999987 4789999999999999998775 4333 34566799999999888899999999
Q ss_pred CcEEEEECCCCeeEEEEec-CCCeeEEEEecCCC-EEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCC
Q 004207 663 SEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLG-RILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHD 740 (768)
Q Consensus 663 g~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~-~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~ 740 (768)
+.|++||+++++++..+.. ...|.+++|+|++. +|++++.|++|+|||+.++++ ..+.+|.
T Consensus 237 g~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~-----------------~~~~~H~ 299 (344)
T 4gqb_B 237 GTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSEL-----------------FRSQAHR 299 (344)
T ss_dssp SEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEE-----------------EEECCCS
T ss_pred CcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcE-----------------EEEcCCC
Confidence 9999999999999998885 56799999999974 688899999999998876543 3456899
Q ss_pred CCeeEEEEeCCCC-EEEEEECCCcEEEeC
Q 004207 741 KLVSSLAASTVNG-MVASASHDKCVKIWK 768 (768)
Q Consensus 741 ~~I~sla~spdg~-~LaSgs~DG~V~IWD 768 (768)
+.|++|+|+|++. +|+++|.||+|++|+
T Consensus 300 ~~V~~v~~sp~~~~llas~s~D~~v~~w~ 328 (344)
T 4gqb_B 300 DFVRDATWSPLNHSLLTTVGWDHQVVHHV 328 (344)
T ss_dssp SCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred CCEEEEEEeCCCCeEEEEEcCCCeEEEEE
Confidence 9999999999986 678999999999995
No 8
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=6.2e-32 Score=295.19 Aligned_cols=265 Identities=17% Similarity=0.269 Sum_probs=223.8
Q ss_pred ccccCCCCCceEEEEecCCC--------CcccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCce
Q 004207 473 TLQHNGASSKSLLMFGSDGM--------GSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFT 544 (768)
Q Consensus 473 ~l~~s~s~~~~~l~~~~~~~--------~~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~ 544 (768)
....+++.+..+.+|..... ++..+....+.+.+.++++|+.|+.+++|......... .
T Consensus 77 ~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~-------------~ 143 (354)
T 2pbi_B 77 RRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNEN-------------M 143 (354)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCC-------------S
T ss_pred CEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEecccccc-------------c
Confidence 35567778889999976543 22334456678889999999999999999654332110 0
Q ss_pred eeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcC--CCCEEEEEeCCCcEE
Q 004207 545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP--SLSRLATSSADRTVR 622 (768)
Q Consensus 545 ~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fsp--dg~~LaTgs~DgtIr 622 (768)
......+.+|.+.|.+++|+|++..|++++.|++|+|||+++++++.++.+|...|.+++|+| ++.+|++|+.||+|+
T Consensus 144 ~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~ 223 (354)
T 2pbi_B 144 AAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAM 223 (354)
T ss_dssp GGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEE
T ss_pred cccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEE
Confidence 112344568999999999999999999999999999999999999999999999999999988 468999999999999
Q ss_pred EEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecC---CCeeEEEEecCCCEEEE
Q 004207 623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ---SGATQMRFQPRLGRILA 699 (768)
Q Consensus 623 VWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~---~~i~sl~fsp~~~~lla 699 (768)
+||++++.. +..+.+|...|.+++|+|++. +|++|+.|++|++||++.+..+..+..+ ..+.+++|+|++.++++
T Consensus 224 ~wd~~~~~~-~~~~~~h~~~v~~v~~~p~~~-~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~ 301 (354)
T 2pbi_B 224 VWDMRSGQC-VQAFETHESDVNSVRYYPSGD-AFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFA 301 (354)
T ss_dssp EEETTTCCE-EEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEE
T ss_pred EEECCCCcE-EEEecCCCCCeEEEEEeCCCC-EEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEE
Confidence 999998775 788899999999999999976 6779999999999999998887777643 35789999999999999
Q ss_pred EEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 700 AAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 700 gs~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
++.|+.|++||+.++... ..+.+|...|++++|+|++.+|++|+.||+|+||+
T Consensus 302 g~~d~~i~vwd~~~~~~~----------------~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 302 GYNDYTINVWDVLKGSRV----------------SILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EETTSCEEEEETTTCSEE----------------EEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EECCCcEEEEECCCCceE----------------EEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 999999999999776543 23458999999999999999999999999999997
No 9
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=7.2e-33 Score=303.17 Aligned_cols=255 Identities=14% Similarity=0.205 Sum_probs=202.2
Q ss_pred ccCccccCCCCEEEeecC------CCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEE
Q 004207 497 SAPNQLTDMDRFVDDGSL------DDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLL 570 (768)
Q Consensus 497 ~~~~~l~~~~~~latGS~------D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~L 570 (768)
+...++.+.+++|++|+. |+.|++|......... .......+|...|++++|+|++. +
T Consensus 45 V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~---------------~~~~~~~~~~~~V~~~~~s~d~~-~ 108 (357)
T 4g56_B 45 IGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNE---------------SLCTAGVQTEAGVTDVAWVSEKG-I 108 (357)
T ss_dssp EEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CG---------------GGCSEEEECSSCEEEEEEETTTE-E
T ss_pred EEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcce---------------eEecccCCCCCCEEEEEEcCCCC-E
Confidence 444555667789999987 5667777543332110 01122346888999999999986 5
Q ss_pred EEEeCCCcEEEEECCCCeEE----EEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEE
Q 004207 571 ATGGHDKKAVLWCTESFTVK----STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL 646 (768)
Q Consensus 571 aSgs~Dg~I~VWdl~t~~~~----~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~sl 646 (768)
++++.||+|+|||+.+++.. ....+|...|++|+|+|++++|++|+.|++|+|||+++++. +..+.+|...|+++
T Consensus 109 l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~-~~~~~~h~~~v~~v 187 (357)
T 4g56_B 109 LVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAV-LKSYNAHSSEVNCV 187 (357)
T ss_dssp EEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEE-EEEECCCSSCEEEE
T ss_pred EEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcE-EEEEcCCCCCEEEE
Confidence 56788999999999887654 34457999999999999999999999999999999998764 78889999999999
Q ss_pred EEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec---CCCeeEEEEecCCC-EEEEEEcCCeEEEEECCCceEeeecc-
Q 004207 647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC---QSGATQMRFQPRLG-RILAAAIENYISILDVETQVCRLKLQ- 721 (768)
Q Consensus 647 afsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~---~~~i~sl~fsp~~~-~llags~Dg~I~IwD~~t~~~~~~~~- 721 (768)
+|++++..++++++.|+.|++||+++++++..+.. ...+.+++|+|++. +|++++.|+.|++||+++..+...+.
T Consensus 188 ~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~ 267 (357)
T 4g56_B 188 AACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAV 267 (357)
T ss_dssp EECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECC
T ss_pred EEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEec
Confidence 99999888888999999999999999887766543 45689999999854 67788899999999998765433322
Q ss_pred -------------------------eeEEeecCCCceEEeccCCCCeeEEEEeC-CCCEEEEEECCCcEEEeC
Q 004207 722 -------------------------TLELWNMTENKTLTLSAHDKLVSSLAAST-VNGMVASASHDKCVKIWK 768 (768)
Q Consensus 722 -------------------------~I~iwd~~~~~~~~l~~H~~~I~sla~sp-dg~~LaSgs~DG~V~IWD 768 (768)
+|++||+.+++++...+|.+.|++|+|+| ++.+|+|+|.||+|+|||
T Consensus 268 ~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~ 340 (357)
T 4g56_B 268 HSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHH 340 (357)
T ss_dssp CSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred cceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEE
Confidence 79999999999998889999999999998 789999999999999996
No 10
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=2.5e-31 Score=288.22 Aligned_cols=249 Identities=16% Similarity=0.259 Sum_probs=205.7
Q ss_pred CCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004207 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (768)
Q Consensus 505 ~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl 584 (768)
.+.+|++|+.|++|++|....... ..........+.+|...|.+++|+|++.+|++|+.|++|+|||+
T Consensus 38 d~~~l~sgs~D~~v~iWd~~~~~~------------~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~ 105 (343)
T 2xzm_R 38 DSPVLISGSRDKTVMIWKLYEEEQ------------NGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDL 105 (343)
T ss_dssp CCCEEEEEETTSCEEEEEECSSCC------------SSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEET
T ss_pred CCCEEEEEcCCCEEEEEECCcCCc------------ccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEEC
Confidence 678999999999999997643311 11122346678899999999999999999999999999999999
Q ss_pred CCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEee---cCCCCeEEEEEeCCCC--------
Q 004207 585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT---GHSTTVMSLDFHPSKE-------- 653 (768)
Q Consensus 585 ~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~---~h~~~V~slafsp~g~-------- 653 (768)
.+++.+..+.+|...|.+++|+|++++|++++.|++|++||+.. .. ..... +|...|.+++|+|++.
T Consensus 106 ~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~-~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 183 (343)
T 2xzm_R 106 RTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILG-EC-KFSSAEKENHSDWVSCVRYSPIMKSANKVQPF 183 (343)
T ss_dssp TSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSS-CE-EEECCTTTSCSSCEEEEEECCCCCSCSCCCSS
T ss_pred CCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccC-Cc-eeeeecccCCCceeeeeeeccccccccccCCC
Confidence 99999999999999999999999999999999999999999984 32 22332 6889999999999863
Q ss_pred -eEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCce-Eeee-----------
Q 004207 654 -DLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQV-CRLK----------- 719 (768)
Q Consensus 654 -~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~-~~~~----------- 719 (768)
.+|++++.|+.|++||. .......+.. ...|.+++|+|++.+|++++.|+.|++||+.... ....
T Consensus 184 ~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~ 262 (343)
T 2xzm_R 184 APYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIA 262 (343)
T ss_dssp CCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEECSSCEEEEE
T ss_pred CCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeecCCCcEEEEE
Confidence 47889999999999995 4566666654 5679999999999999999999999999994321 1111
Q ss_pred ------------cceeEEeecCCCceE---Eec-----------cCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 720 ------------LQTLELWNMTENKTL---TLS-----------AHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 720 ------------~~~I~iwd~~~~~~~---~l~-----------~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
...+++|++.+.... .+. +|...|++++|+|++.+|++|+.||.|+|||
T Consensus 263 ~sp~~~~la~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~ 337 (343)
T 2xzm_R 263 FNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFS 337 (343)
T ss_dssp ECSSSCEEEEEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEE
T ss_pred ECCCCCEEEEECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEE
Confidence 117899998765432 222 6888999999999999999999999999996
No 11
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=4.3e-31 Score=287.08 Aligned_cols=253 Identities=22% Similarity=0.337 Sum_probs=204.9
Q ss_pred CccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCc
Q 004207 499 PNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKK 578 (768)
Q Consensus 499 ~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~ 578 (768)
...+.+.+.+|++|+.|++|++|..... ..........+|...|.+++|+|++++|++|+.|++
T Consensus 21 ~l~~sp~g~~las~~~D~~i~iw~~~~~----------------~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~ 84 (345)
T 3fm0_A 21 FLAWNPAGTLLASCGGDRRIRIWGTEGD----------------SWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDAT 84 (345)
T ss_dssp EEEECTTSSCEEEEETTSCEEEEEEETT----------------EEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred EEEECCCCCEEEEEcCCCeEEEEEcCCC----------------cceeeeeeccccCCcEEEEEECCCCCEEEEEECCCc
Confidence 3445556789999999999999954322 111122334789999999999999999999999999
Q ss_pred EEEEECCCC--eEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC--eeEEEeecCCCCeEEEEEeCCCCe
Q 004207 579 AVLWCTESF--TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD--YSLRTFTGHSTTVMSLDFHPSKED 654 (768)
Q Consensus 579 I~VWdl~t~--~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~--~~~~~~~~h~~~V~slafsp~g~~ 654 (768)
|+|||+.+. +++.++.+|...|.+++|+|++++|++|+.|++|+|||++++. ..+..+.+|...|.+++|+|++.
T Consensus 85 v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~- 163 (345)
T 3fm0_A 85 TCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE- 163 (345)
T ss_dssp EEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSS-
T ss_pred EEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCC-
Confidence 999998776 4677889999999999999999999999999999999998754 33567889999999999999977
Q ss_pred EEEEEeCCCcEEEEECCCCee--EEEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCc---------------eE
Q 004207 655 LLCSCDNNSEIRYWSINNGSC--AGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQ---------------VC 716 (768)
Q Consensus 655 lLaSgs~Dg~I~iWDl~sg~~--i~~~~~-~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~---------------~~ 716 (768)
+|++|+.|+.|++||++.+.. ...+.. ...|.+++|+|++.+|++++.|++|++||.... .+
T Consensus 164 ~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~ 243 (345)
T 3fm0_A 164 LLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKC 243 (345)
T ss_dssp CEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEE
T ss_pred EEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccce
Confidence 666999999999999988753 345543 567999999999999999999999999996321 00
Q ss_pred e--------------------------eecceeEEeecCCCc-----e-----EEeccCCCCeeEEEEeCCC-CEEEEEE
Q 004207 717 R--------------------------LKLQTLELWNMTENK-----T-----LTLSAHDKLVSSLAASTVN-GMVASAS 759 (768)
Q Consensus 717 ~--------------------------~~~~~I~iwd~~~~~-----~-----~~l~~H~~~I~sla~spdg-~~LaSgs 759 (768)
. .....+++|+..... . ....+|...|++|+|+|++ .+||+|+
T Consensus 244 ~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s 323 (345)
T 3fm0_A 244 ICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCS 323 (345)
T ss_dssp EEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEE
T ss_pred eEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcC
Confidence 0 011268899876542 1 1235899999999999998 5999999
Q ss_pred CCCcEEEeC
Q 004207 760 HDKCVKIWK 768 (768)
Q Consensus 760 ~DG~V~IWD 768 (768)
.||+|+|||
T Consensus 324 ~Dg~v~~W~ 332 (345)
T 3fm0_A 324 DDGEVAFWK 332 (345)
T ss_dssp TTSCEEEEE
T ss_pred CCCcEEEEE
Confidence 999999996
No 12
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.4e-30 Score=277.88 Aligned_cols=261 Identities=17% Similarity=0.231 Sum_probs=221.7
Q ss_pred cccccCccccCC-CCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEE
Q 004207 494 SLTSAPNQLTDM-DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLAT 572 (768)
Q Consensus 494 ~~~~~~~~l~~~-~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaS 572 (768)
...+...++.+. +.+|++|+.|++|++|+..... .........+.+|...|.+++|+|++++|++
T Consensus 38 ~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~--------------~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s 103 (340)
T 4aow_A 38 NGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDE--------------TNYGIPQRALRGHSHFVSDVVISSDGQFALS 103 (340)
T ss_dssp SSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSS--------------SCSEEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred cCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCC--------------cccceeeEEEeCCCCCEEEEEECCCCCEEEE
Confidence 334444555544 5799999999999999764431 1223456778899999999999999999999
Q ss_pred EeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCC
Q 004207 573 GGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK 652 (768)
Q Consensus 573 gs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g 652 (768)
++.|+.|++|+............+...+..+.+++++.+|++++.|+.+++||+...........+|...|.+++|++++
T Consensus 104 ~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 183 (340)
T 4aow_A 104 GSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNS 183 (340)
T ss_dssp EETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCS
T ss_pred EcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCC
Confidence 99999999999999999888888999999999999999999999999999999987666566677899999999999875
Q ss_pred C-eEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecc---------
Q 004207 653 E-DLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ--------- 721 (768)
Q Consensus 653 ~-~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~--------- 721 (768)
. .++++++.|+.|++||+++++++..+.. ...|.+++|+|++.+|++++.|+.|++||+++......+.
T Consensus 184 ~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~ 263 (340)
T 4aow_A 184 SNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALC 263 (340)
T ss_dssp SSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEE
T ss_pred CCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeee
Confidence 4 4677899999999999999999888875 5679999999999999999999999999999876654432
Q ss_pred --------------eeEEeecCCCceE----------EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 722 --------------TLELWNMTENKTL----------TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 722 --------------~I~iwd~~~~~~~----------~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
.|++||+..+... ...+|...|++++|+|++.+|++|+.||.|+|||
T Consensus 264 ~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~ 334 (340)
T 4aow_A 264 FSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQ 334 (340)
T ss_dssp ECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred cCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEe
Confidence 7899998876544 2346889999999999999999999999999997
No 13
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.3e-31 Score=295.07 Aligned_cols=271 Identities=21% Similarity=0.306 Sum_probs=224.0
Q ss_pred ccccCCCCCceEEEEecCCC--------CcccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCce
Q 004207 473 TLQHNGASSKSLLMFGSDGM--------GSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFT 544 (768)
Q Consensus 473 ~l~~s~s~~~~~l~~~~~~~--------~~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~ 544 (768)
.+..+++.+..+.+|..... +...+....+.+.+.++++|+.|+.+++|.......... .
T Consensus 79 ~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~------------~ 146 (380)
T 3iz6_a 79 NWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDG------------N 146 (380)
T ss_dssp SCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCC------------S
T ss_pred CEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccC------------C
Confidence 35567778889999986543 333455667888999999999999999997654321100 0
Q ss_pred eeEEEEecCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCeEEEEe-----ccCCCCEEEEEEcC-CCCEEEEEeC
Q 004207 545 FTEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTESFTVKSTL-----EEHTQWITDVRFSP-SLSRLATSSA 617 (768)
Q Consensus 545 ~~~~~~l~~H~~~I~sl~fSpdg-~~LaSgs~Dg~I~VWdl~t~~~~~tl-----~~h~~~V~sl~fsp-dg~~LaTgs~ 617 (768)
......+.+|.+.|.++.|+|++ ..|++|+.|++|++||+.+++.+..+ .+|...|.+++|++ ++.+|++|+.
T Consensus 147 ~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~ 226 (380)
T 3iz6_a 147 MPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSC 226 (380)
T ss_dssp STTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEET
T ss_pred ccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEEC
Confidence 11224567999999999999964 57999999999999999999988877 67999999999987 7899999999
Q ss_pred CCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCC--------CeeEEE
Q 004207 618 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS--------GATQMR 689 (768)
Q Consensus 618 DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~--------~i~sl~ 689 (768)
|++|++||++.....+..+.+|...|.+++|+|++. +|++|+.|++|++||++++.++..+..+. .+.+++
T Consensus 227 D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~-~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 305 (380)
T 3iz6_a 227 DTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQ-RFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVA 305 (380)
T ss_dssp TSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSS-EEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEE
T ss_pred CCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCC-eEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEE
Confidence 999999999866556888999999999999999977 67799999999999999999988876421 378999
Q ss_pred EecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 690 FQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 690 fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
|+|++.++++++.|+.|++||+.+......+.. ...+|.+.|++++|+|++.+|++|+.||+|+||+
T Consensus 306 ~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~------------~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~ 372 (380)
T 3iz6_a 306 FSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGT------------LQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWA 372 (380)
T ss_dssp ECSSSSEEEEECTTSCEEEEETTTCCEEEEECC------------SCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEE
T ss_pred ECCCCCEEEEEECCCCEEEEECCCCceEEEEec------------ccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEe
Confidence 999999999999999999999987665432210 1147999999999999999999999999999996
No 14
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.2e-31 Score=282.68 Aligned_cols=243 Identities=21% Similarity=0.387 Sum_probs=192.3
Q ss_pred EEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEe-cC-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004207 508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLI-PA-STSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (768)
Q Consensus 508 ~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l-~~-H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~ 585 (768)
+|++|+.|++|++|....+. +..+..+ .+ |.+.|.+|+|+|++++|++|+.|++|+|||+.
T Consensus 26 ~las~~~D~~i~lw~~~~~~-----------------~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~ 88 (330)
T 2hes_X 26 ILATGSTDRKIKLVSVKYDD-----------------FTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKE 88 (330)
T ss_dssp EEEEEESSSCEEEEECSSSC-----------------CEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-
T ss_pred EEEEEcCCCEEEEEEecCCC-----------------eEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcc
Confidence 89999999999999654321 1223333 34 99999999999999999999999999999985
Q ss_pred C-------CeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC---eeEEEeecCCCCeEEEEEeCCCCeE
Q 004207 586 S-------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD---YSLRTFTGHSTTVMSLDFHPSKEDL 655 (768)
Q Consensus 586 t-------~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~---~~~~~~~~h~~~V~slafsp~g~~l 655 (768)
. .+++..+.+|...|++++|+|++++|++|+.|++|+|||++... ..+..+.+|...|.+++|+|++. +
T Consensus 89 ~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~-~ 167 (330)
T 2hes_X 89 ESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEA-L 167 (330)
T ss_dssp ------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSS-E
T ss_pred cCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCC-E
Confidence 3 45677889999999999999999999999999999999995332 34677889999999999999976 6
Q ss_pred EEEEeCCCcEEEEECCCC--eeEEEEec-CCCeeEEEEecC--CCEEEEEEcCCeEEEEECCCc--------eEeee---
Q 004207 656 LCSCDNNSEIRYWSINNG--SCAGVFKC-QSGATQMRFQPR--LGRILAAAIENYISILDVETQ--------VCRLK--- 719 (768)
Q Consensus 656 LaSgs~Dg~I~iWDl~sg--~~i~~~~~-~~~i~sl~fsp~--~~~llags~Dg~I~IwD~~t~--------~~~~~--- 719 (768)
|++|+.|++|++||++++ +++..+.. ...|.+++|+|+ +..|++++.|++|++||+.+. .+...
T Consensus 168 l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~ 247 (330)
T 2hes_X 168 LASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPD 247 (330)
T ss_dssp EEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCS
T ss_pred EEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeeccc
Confidence 779999999999999876 56777764 567999999998 668999999999999998643 11110
Q ss_pred ----------------------cceeEEeecCCCc--eE--EeccCCC-CeeEEEEeC--CCCEEEEEECCCcEEEeC
Q 004207 720 ----------------------LQTLELWNMTENK--TL--TLSAHDK-LVSSLAAST--VNGMVASASHDKCVKIWK 768 (768)
Q Consensus 720 ----------------------~~~I~iwd~~~~~--~~--~l~~H~~-~I~sla~sp--dg~~LaSgs~DG~V~IWD 768 (768)
...|++|+...+. .. ...+|.. .|++++|+| ++.+|++|+.||+|+|||
T Consensus 248 ~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~ 325 (330)
T 2hes_X 248 VHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWS 325 (330)
T ss_dssp CCSSCEEEEEECTTSCEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEE
T ss_pred ccccceEEEEEcCCCEEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEE
Confidence 1178999987763 22 2357877 899999999 688999999999999996
No 15
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=6e-31 Score=293.18 Aligned_cols=218 Identities=24% Similarity=0.448 Sum_probs=197.9
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004207 549 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 628 (768)
Q Consensus 549 ~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t 628 (768)
..+.+|.++|+|++|+|++.+|++|+.||+|+|||+.+++...++.+|...|.+++|+|++++|++|+.|++|+|||+.+
T Consensus 102 ~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~ 181 (410)
T 1vyh_C 102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG 181 (410)
T ss_dssp CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTS
T ss_pred EeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEEcCCeEE
Q 004207 629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYIS 707 (768)
Q Consensus 629 ~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags~Dg~I~ 707 (768)
++. +..+.+|...|.+++|+|++. +|++|+.|++|++||++++.++..+.. ...|.++.|+|++.++++++.|+.|+
T Consensus 182 ~~~-~~~~~~h~~~V~~v~~~p~~~-~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~ 259 (410)
T 1vyh_C 182 FEC-IRTMHGHDHNVSSVSIMPNGD-HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVR 259 (410)
T ss_dssp SCE-EECCCCCSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred Cce-eEEEcCCCCCEEEEEEeCCCC-EEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEE
Confidence 664 788899999999999999977 566999999999999999999988875 45689999999999999999999999
Q ss_pred EEECCCceEeee---------------------------------------------cceeEEeecCCCceE-EeccCCC
Q 004207 708 ILDVETQVCRLK---------------------------------------------LQTLELWNMTENKTL-TLSAHDK 741 (768)
Q Consensus 708 IwD~~t~~~~~~---------------------------------------------~~~I~iwd~~~~~~~-~l~~H~~ 741 (768)
+||+.+..+... ...|++||+.++.++ .+.+|..
T Consensus 260 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~ 339 (410)
T 1vyh_C 260 VWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN 339 (410)
T ss_dssp EEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSS
T ss_pred EEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCC
Confidence 999987643321 126999999888765 6779999
Q ss_pred CeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 742 LVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 742 ~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
.|++++|+|++.+|++|+.||.|+|||
T Consensus 340 ~v~~v~~~~~g~~l~s~s~D~~i~vwd 366 (410)
T 1vyh_C 340 WVRGVLFHSGGKFILSCADDKTLRVWD 366 (410)
T ss_dssp CEEEEEECSSSSCEEEEETTTEEEEEC
T ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence 999999999999999999999999997
No 16
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.7e-31 Score=291.55 Aligned_cols=241 Identities=17% Similarity=0.249 Sum_probs=189.1
Q ss_pred cccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 004207 501 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAV 580 (768)
Q Consensus 501 ~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~ 580 (768)
.+.+.+.+|++++ |+++++|+.......... .....+. ......|...|.+++|+|++ .|++|+.||+|+
T Consensus 37 ~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~----~~~~~~~----~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v~ 106 (344)
T 4gqb_B 37 RYRSDGALLLGAS-SLSGRCWAGSLWLFKDPC----AAPNEGF----CSAGVQTEAGVADLTWVGER-GILVASDSGAVE 106 (344)
T ss_dssp EECTTSCEEEEEE-CCSSSCCCEEEEEESSGG----GTTCGGG----CSEEEEESSCEEEEEEETTT-EEEEEETTSEEE
T ss_pred EECCCCCEEEEEe-CCceEEeeceeeeecccc----ccCCcce----eeeeeccCCCEEEEEEeCCC-eEEEEECCCEEE
Confidence 3445567888877 778888832110000000 0000011 11122456789999999985 688999999999
Q ss_pred EEECCCCeEEE----EeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEE
Q 004207 581 LWCTESFTVKS----TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLL 656 (768)
Q Consensus 581 VWdl~t~~~~~----tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lL 656 (768)
|||+.+++.+. .+.+|...|++|+|+|++++|++|+.|++|+|||+++++. +..+.+|...|.+++|++++..+|
T Consensus 107 lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~-~~~~~~h~~~V~~~~~~~~~~~~l 185 (344)
T 4gqb_B 107 LWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVV-LSSYRAHAAQVTCVAASPHKDSVF 185 (344)
T ss_dssp EEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-EEEECCCSSCEEEEEECSSCTTEE
T ss_pred EEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcE-EEEEcCcCCceEEEEecCCCCCce
Confidence 99999876543 3458999999999999999999999999999999998764 888999999999999999998899
Q ss_pred EEEeCCCcEEEEECCCCeeEEEEec---CCCeeEEEEecCC-CEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCc
Q 004207 657 CSCDNNSEIRYWSINNGSCAGVFKC---QSGATQMRFQPRL-GRILAAAIENYISILDVETQVCRLKLQTLELWNMTENK 732 (768)
Q Consensus 657 aSgs~Dg~I~iWDl~sg~~i~~~~~---~~~i~sl~fsp~~-~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~ 732 (768)
++|+.|++|++||+++++++..+.. ...+.+++|+|++ .++++++.|+.|++||++++.++.
T Consensus 186 ~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~-------------- 251 (344)
T 4gqb_B 186 LSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVL-------------- 251 (344)
T ss_dssp EEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCE--------------
T ss_pred eeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEE--------------
Confidence 9999999999999999998887653 3458899999965 467788999999999998765432
Q ss_pred eEEeccCCCCeeEEEEeCCC-CEEEEEECCCcEEEeC
Q 004207 733 TLTLSAHDKLVSSLAASTVN-GMVASASHDKCVKIWK 768 (768)
Q Consensus 733 ~~~l~~H~~~I~sla~spdg-~~LaSgs~DG~V~IWD 768 (768)
.+.+|...|++|+|+|++ .+|++|+.||+|+|||
T Consensus 252 --~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd 286 (344)
T 4gqb_B 252 --SSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLD 286 (344)
T ss_dssp --EEECCSSCEEEEEECSSSSCCEEEEETTSCEEEEC
T ss_pred --EEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEE
Confidence 455899999999999998 5899999999999997
No 17
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.98 E-value=5.1e-30 Score=283.61 Aligned_cols=270 Identities=21% Similarity=0.358 Sum_probs=207.0
Q ss_pred ccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEe
Q 004207 495 LTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG 574 (768)
Q Consensus 495 ~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs 574 (768)
..+....+.+.+.+|++|+ |+.+++|...++............. .............+...|.+++|+|++++|++|+
T Consensus 65 ~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~ 142 (393)
T 1erj_A 65 SVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAAN-KDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGA 142 (393)
T ss_dssp SCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC------------------CCCCBEEEEEECTTSSEEEEEE
T ss_pred CEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccc-cccccccccccCCCceeEEEEEECCCCCEEEEEc
Confidence 3445566677888999987 7899999765442110000000000 0000000111223445699999999999999999
Q ss_pred CCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCe
Q 004207 575 HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED 654 (768)
Q Consensus 575 ~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~ 654 (768)
.|+.|+|||+.+++.+..+.+|...|++++|+|++.+|++++.|++|++||++++.. ...+. +...|.+++|+|....
T Consensus 143 ~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~-~~~~~-~~~~v~~~~~~~~~~~ 220 (393)
T 1erj_A 143 EDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC-SLTLS-IEDGVTTVAVSPGDGK 220 (393)
T ss_dssp TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE-EEEEE-CSSCEEEEEECSTTCC
T ss_pred CCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCee-EEEEE-cCCCcEEEEEECCCCC
Confidence 999999999999999999999999999999999999999999999999999998764 44444 5678999999994455
Q ss_pred EEEEEeCCCcEEEEECCCCeeEEEEe--------cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCce-----------
Q 004207 655 LLCSCDNNSEIRYWSINNGSCAGVFK--------CQSGATQMRFQPRLGRILAAAIENYISILDVETQV----------- 715 (768)
Q Consensus 655 lLaSgs~Dg~I~iWDl~sg~~i~~~~--------~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~----------- 715 (768)
+|++|+.|+.|++||++++.++..+. +...|.+++|+|++.+|++++.|+.|++||+++..
T Consensus 221 ~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~ 300 (393)
T 1erj_A 221 YIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSG 300 (393)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------
T ss_pred EEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCC
Confidence 78899999999999999998877762 34679999999999999999999999999987531
Q ss_pred -Eeee-------------------------cceeEEeecCCCceE-EeccCCCCeeEEEEeC------CCCEEEEEECCC
Q 004207 716 -CRLK-------------------------LQTLELWNMTENKTL-TLSAHDKLVSSLAAST------VNGMVASASHDK 762 (768)
Q Consensus 716 -~~~~-------------------------~~~I~iwd~~~~~~~-~l~~H~~~I~sla~sp------dg~~LaSgs~DG 762 (768)
+... ...|++||..++..+ .+.+|...|.+++|++ ++.+|++|+.||
T Consensus 301 ~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg 380 (393)
T 1erj_A 301 TCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDC 380 (393)
T ss_dssp CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTS
T ss_pred cceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCC
Confidence 1100 117999999887765 6779999999999986 678999999999
Q ss_pred cEEEeC
Q 004207 763 CVKIWK 768 (768)
Q Consensus 763 ~V~IWD 768 (768)
+|+|||
T Consensus 381 ~i~iW~ 386 (393)
T 1erj_A 381 KARIWK 386 (393)
T ss_dssp EEEEEE
T ss_pred cEEECc
Confidence 999996
No 18
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.98 E-value=2.1e-30 Score=307.74 Aligned_cols=249 Identities=17% Similarity=0.270 Sum_probs=209.8
Q ss_pred CCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004207 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (768)
Q Consensus 505 ~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl 584 (768)
...+|++|+.|++|++|....... ........+.+|...|.+++|+|++++|++|+.|++|+|||+
T Consensus 394 ~~~~l~s~s~D~~i~~W~~~~~~~--------------~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~ 459 (694)
T 3dm0_A 394 NADIIVSASRDKSIILWKLTKDDK--------------AYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDL 459 (694)
T ss_dssp CCSEEEEEETTSEEEEEECCCSTT--------------CSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred CCCEEEEEeCCCcEEEEEccCCCc--------------ccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence 357999999999999997643311 111234567899999999999999999999999999999999
Q ss_pred CCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEe---ecCCCCeEEEEEeCCCC-eEEEEEe
Q 004207 585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF---TGHSTTVMSLDFHPSKE-DLLCSCD 660 (768)
Q Consensus 585 ~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~---~~h~~~V~slafsp~g~-~lLaSgs 660 (768)
.+++.+..+.+|...|.+++|+|++++|++|+.|++|+|||+..... .... .+|...|.+++|+|++. .+|++|+
T Consensus 460 ~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s 538 (694)
T 3dm0_A 460 AAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECK-YTISEGGEGHRDWVSCVRFSPNTLQPTIVSAS 538 (694)
T ss_dssp TTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEE-EEECSSTTSCSSCEEEEEECSCSSSCEEEEEE
T ss_pred CCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcc-eeeccCCCCCCCcEEEEEEeCCCCcceEEEEe
Confidence 99999999999999999999999999999999999999999865332 2222 46888999999999863 4788999
Q ss_pred CCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecc------------------
Q 004207 661 NNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ------------------ 721 (768)
Q Consensus 661 ~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~------------------ 721 (768)
.|+.|++||+++++++..+.. ...|.+++|+|++.+|++++.|+.|++||+.++.+...+.
T Consensus 539 ~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 618 (694)
T 3dm0_A 539 WDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLC 618 (694)
T ss_dssp TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCSSCEEEEEECSSSSEEE
T ss_pred CCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEE
Confidence 999999999999998888875 5679999999999999999999999999998876654332
Q ss_pred -----eeEEeecCCCceEE-ecc-------------------CCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 722 -----TLELWNMTENKTLT-LSA-------------------HDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 722 -----~I~iwd~~~~~~~~-l~~-------------------H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
.|++||+.++..+. +.. +...|++++|+|++.+|++|+.||+|+|||
T Consensus 619 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~ 690 (694)
T 3dm0_A 619 AATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWG 690 (694)
T ss_dssp EEETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred EEcCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEe
Confidence 68999998877653 211 112378999999999999999999999996
No 19
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.98 E-value=9.6e-31 Score=278.04 Aligned_cols=243 Identities=15% Similarity=0.215 Sum_probs=196.8
Q ss_pred cCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcC--CCCEEEEEeC
Q 004207 498 APNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--DGKLLATGGH 575 (768)
Q Consensus 498 ~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSp--dg~~LaSgs~ 575 (768)
....+++.+++|++|+.|++|++|..... ....+..+.+|.++|++++|++ ++++|++|+.
T Consensus 13 ~~~~~s~~g~~las~s~D~~v~iw~~~~~-----------------~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~ 75 (297)
T 2pm7_B 13 HDAVMDYYGKRMATCSSDKTIKIFEVEGE-----------------THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSY 75 (297)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEEBCSS-----------------CBCCCEEECCCSSCEEEEEECCGGGCSEEEEEET
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEecCCC-----------------CcEEEEEEccccCCeEEEEecCCCcCCEEEEEcC
Confidence 34445566789999999999999965321 1123466789999999999986 4899999999
Q ss_pred CCcEEEEECCCCe--EEEEeccCCCCEEEEEEcCC--CCEEEEEeCCCcEEEEECCCCC-eeEEEeecCCCCeEEEEEeC
Q 004207 576 DKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVWDTENPD-YSLRTFTGHSTTVMSLDFHP 650 (768)
Q Consensus 576 Dg~I~VWdl~t~~--~~~tl~~h~~~V~sl~fspd--g~~LaTgs~DgtIrVWDl~t~~-~~~~~~~~h~~~V~slafsp 650 (768)
|++|+|||+++++ .+..+.+|...|.+++|+|+ +.+|++++.|++|++||++++. .....+.+|...|.+++|+|
T Consensus 76 D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p 155 (297)
T 2pm7_B 76 DGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAP 155 (297)
T ss_dssp TTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECC
T ss_pred CCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecC
Confidence 9999999998764 56678889999999999997 8899999999999999998764 22467788999999999999
Q ss_pred CC------------CeEEEEEeCCCcEEEEECCCCe----eEEEEec-CCCeeEEEEecCC---CEEEEEEcCCeEEEEE
Q 004207 651 SK------------EDLLCSCDNNSEIRYWSINNGS----CAGVFKC-QSGATQMRFQPRL---GRILAAAIENYISILD 710 (768)
Q Consensus 651 ~g------------~~lLaSgs~Dg~I~iWDl~sg~----~i~~~~~-~~~i~sl~fsp~~---~~llags~Dg~I~IwD 710 (768)
++ ..+|++|+.|+.|++||++++. +...+.. ...|.+++|+|++ .+|++++.|++|+|||
T Consensus 156 ~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd 235 (297)
T 2pm7_B 156 ATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWT 235 (297)
T ss_dssp CC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEE
T ss_pred CcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEE
Confidence 73 3478899999999999998765 4555654 5679999999985 7899999999999999
Q ss_pred CCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 711 VETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 711 ~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
+++...... .. .+....|...|.+++|+|++.+|++++.||.|+||+
T Consensus 236 ~~~~~~~~~---~~--------~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~ 282 (297)
T 2pm7_B 236 QDNEQGPWK---KT--------LLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK 282 (297)
T ss_dssp ESSTTSCCE---EE--------ESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEE
T ss_pred eCCCCCccc---ee--------eeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEE
Confidence 876321000 00 011136788999999999999999999999999995
No 20
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.98 E-value=5.3e-30 Score=273.25 Aligned_cols=257 Identities=19% Similarity=0.276 Sum_probs=213.3
Q ss_pred cccCCCCCceEEEEecCCC--------CcccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCcee
Q 004207 474 LQHNGASSKSLLMFGSDGM--------GSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTF 545 (768)
Q Consensus 474 l~~s~s~~~~~l~~~~~~~--------~~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~ 545 (768)
+...++.+..+.+|..... +...+....+.+.+.++++|+.|++|++|+....
T Consensus 27 ~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~------------------- 87 (304)
T 2ynn_A 27 WVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG------------------- 87 (304)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTC-------------------
T ss_pred EEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCC-------------------
Confidence 4455667788888876543 2223345556778899999999999999965432
Q ss_pred eEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC-eEEEEeccCCCCEEEEEEcC-CCCEEEEEeCCCcEEE
Q 004207 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRV 623 (768)
Q Consensus 546 ~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~-~~~~tl~~h~~~V~sl~fsp-dg~~LaTgs~DgtIrV 623 (768)
..+..+.+|.+.|.+++|+|++.+|++|+.|++|+|||++++ .+...+.+|...|.+++|+| ++.+|++|+.|++|+|
T Consensus 88 ~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~i 167 (304)
T 2ynn_A 88 EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKV 167 (304)
T ss_dssp CEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEE
T ss_pred cEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEE
Confidence 235667899999999999999999999999999999999876 56678899999999999999 6789999999999999
Q ss_pred EECCCCCeeEEEeecCCCCeEEEEEeCC-CCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEE
Q 004207 624 WDTENPDYSLRTFTGHSTTVMSLDFHPS-KEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAA 701 (768)
Q Consensus 624 WDl~t~~~~~~~~~~h~~~V~slafsp~-g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags 701 (768)
||++..........+|...|..++|+|. ...+|++|+.|++|++||+++++++..+.. ...|.+++|+|++.+|++++
T Consensus 168 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s 247 (304)
T 2ynn_A 168 WSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGS 247 (304)
T ss_dssp EETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEE
T ss_pred EECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEc
Confidence 9998877655566677788999999874 234788999999999999999999999885 56799999999999999999
Q ss_pred cCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCC--EEEEEECCCcEE
Q 004207 702 IENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNG--MVASASHDKCVK 765 (768)
Q Consensus 702 ~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~--~LaSgs~DG~V~ 765 (768)
.|+.|++||+.+.++.. .+..|...|.+++|+|++. +|++|+.||.+.
T Consensus 248 ~Dg~i~iWd~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~asg~~~g~~~ 297 (304)
T 2ynn_A 248 EDGTLKIWNSSTYKVEK----------------TLNVGLERSWCIATHPTGRKNYIASGFDNGFTV 297 (304)
T ss_dssp TTSCEEEEETTTCCEEE----------------EECCSSSSEEEEEECTTCGGGCEEEEETTEEEE
T ss_pred CCCeEEEEECCCCceee----------------eccCCCccEEEEEECCCCCceEEEEecCCceEE
Confidence 99999999998876543 3447888999999999885 688888877654
No 21
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.98 E-value=3.7e-30 Score=278.90 Aligned_cols=230 Identities=23% Similarity=0.391 Sum_probs=198.3
Q ss_pred cCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 004207 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 582 (768)
Q Consensus 503 ~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VW 582 (768)
.+.+.++++|+.|++|++|..... ..+..+..|...|.+++|+|++++|++|+.|+.|+||
T Consensus 64 s~d~~~l~s~s~Dg~v~iWd~~~~-------------------~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw 124 (340)
T 1got_B 64 GTDSRLLLSASQDGKLIIWDSYTT-------------------NKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY 124 (340)
T ss_dssp CTTSSEEEEEETTTEEEEEETTTC-------------------CEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred CCCCCEEEEEeCCCcEEEEECCCC-------------------CcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 445679999999999999965332 2355677899999999999999999999999999999
Q ss_pred ECCCC----eEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEE
Q 004207 583 CTESF----TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS 658 (768)
Q Consensus 583 dl~t~----~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaS 658 (768)
++.+. +....+.+|...|.++.|++++ .|++++.|++|++||++++.. +..+.+|...|.+++|+|++. +|++
T Consensus 125 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~s~d~~i~~wd~~~~~~-~~~~~~h~~~v~~~~~~~~~~-~l~s 201 (340)
T 1got_B 125 NLKTREGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIETGQQ-TTTFTGHTGDVMSLSLAPDTR-LFVS 201 (340)
T ss_dssp ETTTCSBSCEEEEEEECCSSCEEEEEEEETT-EEEEEETTSCEEEEETTTTEE-EEEECCCSSCEEEEEECTTSS-EEEE
T ss_pred ECccCCCcceeEEEecCCCccEEEEEECCCC-cEEEEECCCcEEEEECCCCcE-EEEEcCCCCceEEEEECCCCC-EEEE
Confidence 99865 4567788999999999999876 589999999999999998764 788899999999999999976 7779
Q ss_pred EeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEec
Q 004207 659 CDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLS 737 (768)
Q Consensus 659 gs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~ 737 (768)
|+.|+.|++||++++.++..+.. ...|.+++|+|++.+|++++.|+.|++||+++......+ ...
T Consensus 202 g~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~--------------~~~ 267 (340)
T 1got_B 202 GACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY--------------SHD 267 (340)
T ss_dssp EETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE--------------CCT
T ss_pred EeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEE--------------ccC
Confidence 99999999999999999988875 567999999999999999999999999999886543211 112
Q ss_pred cCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 738 AHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 738 ~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
.+...|++++|+|++.+|++|+.||.|+|||
T Consensus 268 ~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd 298 (340)
T 1got_B 268 NIICGITSVSFSKSGRLLLAGYDDFNCNVWD 298 (340)
T ss_dssp TCCSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred CcccceEEEEECCCCCEEEEECCCCeEEEEE
Confidence 3445799999999999999999999999996
No 22
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=99.98 E-value=2.7e-30 Score=302.92 Aligned_cols=266 Identities=19% Similarity=0.295 Sum_probs=222.8
Q ss_pred ceEEEEecCCC--------CcccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecC
Q 004207 482 KSLLMFGSDGM--------GSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA 553 (768)
Q Consensus 482 ~~~l~~~~~~~--------~~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~ 553 (768)
..+..|..... +...+...++.+.+.+|++|+.|++|++|+..... . .....+.+
T Consensus 39 ~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~--------------~---~~~~~~~~ 101 (611)
T 1nr0_A 39 TSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTT--------------H---ILKTTIPV 101 (611)
T ss_dssp TEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTT--------------C---CEEEEEEC
T ss_pred CEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCc--------------c---eeeEeecc
Confidence 46667765421 34445677788999999999999999999653221 0 12345678
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCC----CcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCC
Q 004207 554 STSKVESCHFSPDGKLLATGGHD----KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTEN 628 (768)
Q Consensus 554 H~~~I~sl~fSpdg~~LaSgs~D----g~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~-~LaTgs~DgtIrVWDl~t 628 (768)
|.+.|.+++|+||+++|++++.+ ++|++|| +++...++.+|...|++++|+|++. +|++|+.|++|++||..+
T Consensus 102 ~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~ 179 (611)
T 1nr0_A 102 FSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPP 179 (611)
T ss_dssp SSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTT
T ss_pred cCCceEEEEECCCCCEEEEEECCCCceeEEEEee--CCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCC
Confidence 99999999999999999998875 3677776 5666778899999999999999986 699999999999999987
Q ss_pred CCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEe--------cCCCeeEEEEecCCCEEEEE
Q 004207 629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--------CQSGATQMRFQPRLGRILAA 700 (768)
Q Consensus 629 ~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~--------~~~~i~sl~fsp~~~~llag 700 (768)
.+. +..+.+|...|.+++|+|++. +|++|+.|++|++||+.+++++..+. +...|.+++|+|++.+|+++
T Consensus 180 ~~~-~~~l~~H~~~V~~v~fspdg~-~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~ 257 (611)
T 1nr0_A 180 FKF-KSTFGEHTKFVHSVRYNPDGS-LFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASA 257 (611)
T ss_dssp BEE-EEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEE
T ss_pred CeE-eeeeccccCceEEEEECCCCC-EEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEE
Confidence 654 778899999999999999977 67799999999999999999988873 45679999999999999999
Q ss_pred EcCCeEEEEECCCceEeeec--------------------------ceeEEeecCCCceE-EeccCCCCeeEEEEeCCCC
Q 004207 701 AIENYISILDVETQVCRLKL--------------------------QTLELWNMTENKTL-TLSAHDKLVSSLAASTVNG 753 (768)
Q Consensus 701 s~Dg~I~IwD~~t~~~~~~~--------------------------~~I~iwd~~~~~~~-~l~~H~~~I~sla~spdg~ 753 (768)
+.|++|++||+.++.+...+ ..+++|+...+... .+.+|...|++++|+|++.
T Consensus 258 s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~ 337 (611)
T 1nr0_A 258 SADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGK 337 (611)
T ss_dssp ETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS
T ss_pred eCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCC
Confidence 99999999999987655432 25788998877654 5679999999999999999
Q ss_pred EEEEEECCCcEEEeC
Q 004207 754 MVASASHDKCVKIWK 768 (768)
Q Consensus 754 ~LaSgs~DG~V~IWD 768 (768)
+|++++.||.|++||
T Consensus 338 ~l~s~s~D~~v~~Wd 352 (611)
T 1nr0_A 338 TLFSADAEGHINSWD 352 (611)
T ss_dssp EEEEEETTSCEEEEE
T ss_pred EEEEEeCCCcEEEEE
Confidence 999999999999996
No 23
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.98 E-value=1.4e-29 Score=268.94 Aligned_cols=256 Identities=18% Similarity=0.261 Sum_probs=218.6
Q ss_pred cccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeC
Q 004207 496 TSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH 575 (768)
Q Consensus 496 ~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~ 575 (768)
.+....+.+.+.++++++ |+.|++|........ ..+ ......+|...|.+++|+|++++|++++.
T Consensus 53 ~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~-------------~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 117 (337)
T 1gxr_A 53 VVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNK-------------SPV-SQLDCLNRDNYIRSCKLLPDGCTLIVGGE 117 (337)
T ss_dssp CCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCC-------------SCS-EEEECSCTTSBEEEEEECTTSSEEEEEES
T ss_pred ceEEEEEecCCcEEEEcC-CCeEEEEECCCCCce-------------eee-ecccccCCCCcEEEEEEcCCCCEEEEEcC
Confidence 344455566788999999 999999976543210 011 11123378999999999999999999999
Q ss_pred CCcEEEEECCCCe--EEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCC
Q 004207 576 DKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE 653 (768)
Q Consensus 576 Dg~I~VWdl~t~~--~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~ 653 (768)
|+.|++||+.+++ ....+..|...|.+++|+|++++|++++.|+.|++||+++++. +..+..|...|.+++|+|++.
T Consensus 118 d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~-~~~~~~~~~~i~~~~~~~~~~ 196 (337)
T 1gxr_A 118 ASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTL-VRQFQGHTDGASCIDISNDGT 196 (337)
T ss_dssp SSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-EEEECCCSSCEEEEEECTTSS
T ss_pred CCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCce-eeeeecccCceEEEEECCCCC
Confidence 9999999999877 6677888999999999999999999999999999999998654 778888999999999999976
Q ss_pred eEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecc------------
Q 004207 654 DLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ------------ 721 (768)
Q Consensus 654 ~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~------------ 721 (768)
+|++++.|+.|++||+++++.+..+.....+.+++|+|++.++++++.++.|++||+.+........
T Consensus 197 -~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~ 275 (337)
T 1gxr_A 197 -KLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAY 275 (337)
T ss_dssp -EEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECT
T ss_pred -EEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcCCccceeEEEECC
Confidence 6668889999999999999999999888999999999999999999999999999998764332111
Q ss_pred ------------eeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 722 ------------TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 722 ------------~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
.+++||+..++......|...|.+++|+|++.+|++++.||.|+|||
T Consensus 276 ~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~ 334 (337)
T 1gxr_A 276 CGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYE 334 (337)
T ss_dssp TSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred CCCEEEEecCCCcEEEEECCCCeEEEEecCCCcEEEEEECCCCCEEEEecCCCeEEEEE
Confidence 79999999998887778999999999999999999999999999996
No 24
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.98 E-value=2.2e-29 Score=270.45 Aligned_cols=251 Identities=14% Similarity=0.195 Sum_probs=214.8
Q ss_pred ccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC
Q 004207 497 SAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD 576 (768)
Q Consensus 497 ~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~D 576 (768)
+....+.+.+.++++|+.|+.|++|+.... ..+..+.+|...|++++|+|++++|++++.|
T Consensus 35 v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~-------------------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d 95 (369)
T 3zwl_B 35 LTQVKYNKEGDLLFSCSKDSSASVWYSLNG-------------------ERLGTLDGHTGTIWSIDVDCFTKYCVTGSAD 95 (369)
T ss_dssp EEEEEECTTSCEEEEEESSSCEEEEETTTC-------------------CEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEEEEEcCCCCEEEEEeCCCEEEEEeCCCc-------------------hhhhhhhhcCCcEEEEEEcCCCCEEEEEeCC
Confidence 333444556789999999999999965432 2456778999999999999999999999999
Q ss_pred CcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCCe----------eEEEeecCCC
Q 004207 577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD-----RTVRVWDTENPDY----------SLRTFTGHST 641 (768)
Q Consensus 577 g~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~D-----gtIrVWDl~t~~~----------~~~~~~~h~~ 641 (768)
|.|+|||+.+++.+..+. |...|.+++|+|++++|++++.+ +.|++||++.... .+..+..|..
T Consensus 96 g~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (369)
T 3zwl_B 96 YSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEG 174 (369)
T ss_dssp TEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTT
T ss_pred CeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcC
Confidence 999999999999998887 88899999999999999999999 9999999976532 2345556666
Q ss_pred --CeEEEEEeCCCCeEEEEEeCCCcEEEEECCC-CeeEEEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEe
Q 004207 642 --TVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCR 717 (768)
Q Consensus 642 --~V~slafsp~g~~lLaSgs~Dg~I~iWDl~s-g~~i~~~~~-~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~ 717 (768)
.+.+++|+|++. +|++++.||.|++||+++ +..+..+.. ...|.+++|+|++.+|++++.|+.|++||+++....
T Consensus 175 ~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~ 253 (369)
T 3zwl_B 175 LDAATVAGWSTKGK-YIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVL 253 (369)
T ss_dssp CCCEEEEEECGGGC-EEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred ccceeEEEEcCCCC-EEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCcee
Confidence 899999999977 566888999999999998 777777774 667999999999999999999999999999987655
Q ss_pred eecc--------------------------------------eeEEeecCCCceE-EeccCCCCeeEEEEeCCCCEEEEE
Q 004207 718 LKLQ--------------------------------------TLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASA 758 (768)
Q Consensus 718 ~~~~--------------------------------------~I~iwd~~~~~~~-~l~~H~~~I~sla~spdg~~LaSg 758 (768)
..+. .+++||...++.. .+.+|...|++++|+|++.+|+++
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 333 (369)
T 3zwl_B 254 KKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASG 333 (369)
T ss_dssp EEEECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred eeecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEE
Confidence 4432 5889998887765 567899999999999999999999
Q ss_pred ECCCcEEEeC
Q 004207 759 SHDKCVKIWK 768 (768)
Q Consensus 759 s~DG~V~IWD 768 (768)
+.||.|+|||
T Consensus 334 ~~dg~v~iw~ 343 (369)
T 3zwl_B 334 GEDGFIRLHH 343 (369)
T ss_dssp ETTSEEEEEE
T ss_pred cCCCeEEEEE
Confidence 9999999996
No 25
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=99.97 E-value=4.4e-30 Score=301.08 Aligned_cols=250 Identities=20% Similarity=0.315 Sum_probs=203.4
Q ss_pred CccccCCCC-EEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCC
Q 004207 499 PNQLTDMDR-FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDK 577 (768)
Q Consensus 499 ~~~l~~~~~-~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg 577 (768)
...+.+.+. .+++|+.|++|++|... ..+....+.+|.+.|.+++|+||+++|++|+.|+
T Consensus 152 ~v~f~p~~~~~l~s~s~D~~v~lwd~~-------------------~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~ 212 (611)
T 1nr0_A 152 SVDFKPSRPFRIISGSDDNTVAIFEGP-------------------PFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDG 212 (611)
T ss_dssp EEEECSSSSCEEEEEETTSCEEEEETT-------------------TBEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECC-------------------CCeEeeeeccccCceEEEEECCCCCEEEEEECCC
Confidence 333444444 69999999999999532 1234567889999999999999999999999999
Q ss_pred cEEEEECCCCeEEEEec-------cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCee------------------
Q 004207 578 KAVLWCTESFTVKSTLE-------EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS------------------ 632 (768)
Q Consensus 578 ~I~VWdl~t~~~~~tl~-------~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~------------------ 632 (768)
+|+|||+.+++.+..+. +|.+.|++++|+|++++|++++.|++|+|||+++++..
T Consensus 213 ~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (611)
T 1nr0_A 213 TIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW 292 (611)
T ss_dssp CEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE
T ss_pred cEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEE
Confidence 99999999999988884 79999999999999999999999999999999875431
Q ss_pred ------------------------EEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEE---------
Q 004207 633 ------------------------LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF--------- 679 (768)
Q Consensus 633 ------------------------~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~--------- 679 (768)
...+.+|...|++++|+|++. +|++++.|+.|++||+.++.+...+
T Consensus 293 ~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~-~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~ 371 (611)
T 1nr0_A 293 TKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGK-TLFSADAEGHINSWDISTGISNRVFPDVHATMIT 371 (611)
T ss_dssp CSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEECSSCSCSSCEE
T ss_pred cCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCC-EEEEEeCCCcEEEEECCCCceeeecccCCcceEE
Confidence 234457999999999999987 6669999999999999876543221
Q ss_pred --------------------------------------------------------------------------ecCCCe
Q 004207 680 --------------------------------------------------------------------------KCQSGA 685 (768)
Q Consensus 680 --------------------------------------------------------------------------~~~~~i 685 (768)
.+...+
T Consensus 372 ~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v 451 (611)
T 1nr0_A 372 GIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNS 451 (611)
T ss_dssp EEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCE
T ss_pred EEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCc
Confidence 011336
Q ss_pred eEEEEecCCCEEEEEEcCCeEEEEECCCceEe--ee------------------------cceeEEeecCC-CceEE---
Q 004207 686 TQMRFQPRLGRILAAAIENYISILDVETQVCR--LK------------------------LQTLELWNMTE-NKTLT--- 735 (768)
Q Consensus 686 ~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~--~~------------------------~~~I~iwd~~~-~~~~~--- 735 (768)
.+++|+|++.+|++++.|+.|++||+.+.... .. ...+++|++.+ +++..
T Consensus 452 ~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~ 531 (611)
T 1nr0_A 452 SCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNS 531 (611)
T ss_dssp EEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCC
T ss_pred eEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeee
Confidence 78999999999999999999999998765321 10 11789999887 44432
Q ss_pred eccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 736 LSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 736 l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
+..|...|++++|+|++.+|++|+.|++|+|||
T Consensus 532 ~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~ 564 (611)
T 1nr0_A 532 WTFHTAKVACVSWSPDNVRLATGSLDNSVIVWN 564 (611)
T ss_dssp CCCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred eeecccceeEEEECCCCCEEEEEECCCcEEEEE
Confidence 234999999999999999999999999999996
No 26
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.97 E-value=6e-31 Score=294.84 Aligned_cols=244 Identities=15% Similarity=0.224 Sum_probs=200.3
Q ss_pred CCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEE
Q 004207 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWC 583 (768)
Q Consensus 505 ~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSp-dg~~LaSgs~Dg~I~VWd 583 (768)
.+.+|++|+.||+|++|+..... ...+..+.+|.+.|++|+|+| ++.+|++|+.||+|+|||
T Consensus 131 ~~~~lasGs~dg~i~lWd~~~~~-----------------~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd 193 (435)
T 4e54_B 131 HPSTVAVGSKGGDIMLWNFGIKD-----------------KPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQD 193 (435)
T ss_dssp CTTCEEEEETTSCEEEECSSCCS-----------------CCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEE
T ss_pred CCCEEEEEeCCCEEEEEECCCCC-----------------ceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEee
Confidence 45789999999999999654321 122345678999999999998 789999999999999999
Q ss_pred CCCCeEEEEecc--CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeC
Q 004207 584 TESFTVKSTLEE--HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 661 (768)
Q Consensus 584 l~t~~~~~tl~~--h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~ 661 (768)
+++......... +...+.+++|+|++.+|++|+.||+|++||++.. .+..+.+|...|.+|+|+|++..+|++|+.
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~--~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~ 271 (435)
T 4e54_B 194 FKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK--ELWNLRMHKKKVTHVALNPCCDWFLATASV 271 (435)
T ss_dssp TTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC--BCCCSBCCSSCEEEEEECTTCSSEEEEEET
T ss_pred ccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc--eeEEEecccceEEeeeecCCCceEEEEecC
Confidence 987655444433 3446789999999999999999999999999753 366788999999999999999989999999
Q ss_pred CCcEEEEECCCCeeEEEE----ecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeec-----------------
Q 004207 662 NSEIRYWSINNGSCAGVF----KCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL----------------- 720 (768)
Q Consensus 662 Dg~I~iWDl~sg~~i~~~----~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~----------------- 720 (768)
|+.|++||+++.+....+ .+...|.+++|+|++.+|++++.|+.|+|||+.++.+...+
T Consensus 272 d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (435)
T 4e54_B 272 DQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAA 351 (435)
T ss_dssp TSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCE
T ss_pred cceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEE
Confidence 999999999987654433 34567999999999999999999999999999875332111
Q ss_pred --------------------------ceeEEeecCCCceEE--eccCCCCeeEE-EEeCCCCEEEEEECCCcEEEeC
Q 004207 721 --------------------------QTLELWNMTENKTLT--LSAHDKLVSSL-AASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 721 --------------------------~~I~iwd~~~~~~~~--l~~H~~~I~sl-a~spdg~~LaSgs~DG~V~IWD 768 (768)
..|++||..+++.+. ..+|...|.++ +|+|++.+|++|+ |+.|+|||
T Consensus 352 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~ 427 (435)
T 4e54_B 352 WHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWS 427 (435)
T ss_dssp ECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECC
T ss_pred EcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEE
Confidence 158899999888763 34788889887 6999999999876 78999997
No 27
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=99.97 E-value=2.9e-29 Score=288.96 Aligned_cols=268 Identities=26% Similarity=0.430 Sum_probs=222.5
Q ss_pred ccCCCCCceEEEEecCCC-------CcccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeE
Q 004207 475 QHNGASSKSLLMFGSDGM-------GSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTE 547 (768)
Q Consensus 475 ~~s~s~~~~~l~~~~~~~-------~~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~ 547 (768)
...++.+..+.+|...+. +...+....+.+.+.++++++.|++|++|+... ..
T Consensus 277 l~~~~~d~~i~~w~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~--------------------~~ 336 (577)
T 2ymu_A 277 IASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG--------------------QH 336 (577)
T ss_dssp EEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS--------------------CE
T ss_pred EEEEeCCCEEEEEeCCCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC--------------------Ce
Confidence 344556667777765443 222333455677888999999999999995321 13
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004207 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (768)
Q Consensus 548 ~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~ 627 (768)
+..+.+|...|.+++|+|++++|++++.|+.|++||. +++.+..+.+|...|.+++|+|++++|++++.|++|+|||..
T Consensus 337 ~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~ 415 (577)
T 2ymu_A 337 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN 415 (577)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT
T ss_pred eEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC
Confidence 4566789999999999999999999999999999996 567888899999999999999999999999999999999964
Q ss_pred CCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEe-cCCCeeEEEEecCCCEEEEEEcCCeE
Q 004207 628 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYI 706 (768)
Q Consensus 628 t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~-~~~~i~sl~fsp~~~~llags~Dg~I 706 (768)
++ .+..+.+|...|++++|+|++. +|++++.|+.|++||+. ++++..+. +...|.+++|+|++.+|++++.|+.|
T Consensus 416 -~~-~~~~~~~~~~~v~~~~~s~d~~-~l~~~~~d~~v~~w~~~-~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i 491 (577)
T 2ymu_A 416 -GQ-LLQTLTGHSSSVWGVAFSPDDQ-TIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTV 491 (577)
T ss_dssp -CC-EEEEEECCSSCEEEEEECTTSS-EEEEEETTSEEEEEETT-SCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEE
T ss_pred -CC-EEEEecCCCCCeEEEEECCCCC-EEEEEcCCCEEEEEECC-CCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEE
Confidence 33 4788889999999999999976 66789999999999975 56666655 46779999999999999999999999
Q ss_pred EEEECCCceEeeecc-------------------------eeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECC
Q 004207 707 SILDVETQVCRLKLQ-------------------------TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD 761 (768)
Q Consensus 707 ~IwD~~t~~~~~~~~-------------------------~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~D 761 (768)
++||.... +...+. .|++||.....+..+.+|.+.|++|+|+||+++|+|++.|
T Consensus 492 ~iw~~~~~-~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D 570 (577)
T 2ymu_A 492 KLWNRNGQ-LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSD 570 (577)
T ss_dssp EEEETTSC-EEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETT
T ss_pred EEEcCCCC-EEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCC
Confidence 99997543 222211 7999998766666888999999999999999999999999
Q ss_pred CcEEEeC
Q 004207 762 KCVKIWK 768 (768)
Q Consensus 762 G~V~IWD 768 (768)
++|+|||
T Consensus 571 ~~i~~Wd 577 (577)
T 2ymu_A 571 KTVKLWN 577 (577)
T ss_dssp SCEEEEC
T ss_pred CEEEEeC
Confidence 9999998
No 28
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.97 E-value=1.6e-29 Score=276.40 Aligned_cols=246 Identities=15% Similarity=0.184 Sum_probs=205.7
Q ss_pred ccCCC-CEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcC-CCCEEEEEeCCCcE
Q 004207 502 LTDMD-RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKA 579 (768)
Q Consensus 502 l~~~~-~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSp-dg~~LaSgs~Dg~I 579 (768)
+.+.+ .++++|+.|+.|++|...... ........+|...|.+++|+| ++.+|++++.|+.|
T Consensus 81 ~~~~~~~~l~s~~~dg~i~iwd~~~~~-----------------~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i 143 (383)
T 3ei3_B 81 WHPTHPTTVAVGSKGGDIILWDYDVQN-----------------KTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGAT 143 (383)
T ss_dssp ECSSCTTEEEEEEBTSCEEEEETTSTT-----------------CEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEE
T ss_pred ECCCCCCEEEEEcCCCeEEEEeCCCcc-----------------cceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEE
Confidence 34444 799999999999999664331 112223357999999999999 78999999999999
Q ss_pred EEEECCCCeEEEEeccC---CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEE
Q 004207 580 VLWCTESFTVKSTLEEH---TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLL 656 (768)
Q Consensus 580 ~VWdl~t~~~~~tl~~h---~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lL 656 (768)
++||+.+ ..+..+..| ...|.+++|+|++++|++++.|+.|++||++ ++ .+..+.+|...|.+++|+|++..+|
T Consensus 144 ~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~-~~~~~~~h~~~v~~~~~~~~~~~~l 220 (383)
T 3ei3_B 144 TLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GH-EIFKEKLHKAKVTHAEFNPRCDWLM 220 (383)
T ss_dssp EEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SC-EEEEEECSSSCEEEEEECSSCTTEE
T ss_pred EEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CC-EEEEeccCCCcEEEEEECCCCCCEE
Confidence 9999986 555555443 4789999999999999999999999999995 33 4788889999999999999988788
Q ss_pred EEEeCCCcEEEEECCC----CeeEEEEecCCCeeEEEEec-CCCEEEEEEcCCeEEEEECCCceEee-------------
Q 004207 657 CSCDNNSEIRYWSINN----GSCAGVFKCQSGATQMRFQP-RLGRILAAAIENYISILDVETQVCRL------------- 718 (768)
Q Consensus 657 aSgs~Dg~I~iWDl~s----g~~i~~~~~~~~i~sl~fsp-~~~~llags~Dg~I~IwD~~t~~~~~------------- 718 (768)
++|+.|+.|++||+++ +.++..+.+...|.+++|+| ++.+|++++.|+.|++||+++.....
T Consensus 221 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 300 (383)
T 3ei3_B 221 ATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHL 300 (383)
T ss_dssp EEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTS
T ss_pred EEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccc
Confidence 8999999999999998 67888887888999999999 99999999999999999997653311
Q ss_pred ---------------------------ecceeEEeecCCCceE-Eecc--CCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 719 ---------------------------KLQTLELWNMTENKTL-TLSA--HDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 719 ---------------------------~~~~I~iwd~~~~~~~-~l~~--H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
....|++||+.+++.+ .+.+ |...+.+++|+|++.+|++|+ ||.|+|||
T Consensus 301 ~~~~~~~~p~~~~~~~~~s~dg~~s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~ 379 (383)
T 3ei3_B 301 TPIKATWHPMYDLIVAGRYPDDQLLLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWN 379 (383)
T ss_dssp CCCCCEECSSSSEEEEECBCCTTTCTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEE
T ss_pred cceEEeccCCCCceEEEecCCcccccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEe
Confidence 1246899999888765 4544 567888889999999999997 99999996
No 29
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.97 E-value=1.2e-28 Score=274.73 Aligned_cols=242 Identities=20% Similarity=0.349 Sum_probs=205.1
Q ss_pred CCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004207 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (768)
Q Consensus 506 ~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~ 585 (768)
.++|++|. |++|++|+...+. ...+..+.+|...|+||+|+|+|++||+|+.||+|+|||++
T Consensus 116 ~n~lAvgl-d~tV~lWd~~tg~-----------------~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~ 177 (420)
T 4gga_A 116 GNVLAVAL-DNSVYLWSASSGD-----------------ILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQ 177 (420)
T ss_dssp TSEEEEEE-TTEEEEEETTTCC-----------------EEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred CCEEEEEe-CCEEEEEECCCCC-----------------EEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcC
Confidence 46788875 9999999654331 12234456888999999999999999999999999999999
Q ss_pred CCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcE
Q 004207 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 665 (768)
Q Consensus 586 t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I 665 (768)
+++++..+.+|...|.++.|+ +.+|++|+.|+++++||.......+..+.+|...+.++.|+|++. ++++++.|+.|
T Consensus 178 ~~~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~-~l~s~~~D~~v 254 (420)
T 4gga_A 178 QQKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGR-HLASGGNDNLV 254 (420)
T ss_dssp TTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCE
T ss_pred CCcEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCC-eeeeeeccccc
Confidence 999999999999999999886 579999999999999999988877889999999999999999987 66689999999
Q ss_pred EEEECCCCee----EEEE-ecCCCeeEEEEecCCCEEEE-E--EcCCeEEEEECCCceEeeecc----------------
Q 004207 666 RYWSINNGSC----AGVF-KCQSGATQMRFQPRLGRILA-A--AIENYISILDVETQVCRLKLQ---------------- 721 (768)
Q Consensus 666 ~iWDl~sg~~----i~~~-~~~~~i~sl~fsp~~~~lla-g--s~Dg~I~IwD~~t~~~~~~~~---------------- 721 (768)
++||+.+++. +... .+...|.+++|+|.+..+++ + +.|++|++||+.++.+...+.
T Consensus 255 ~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~ 334 (420)
T 4gga_A 255 NVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKE 334 (420)
T ss_dssp EEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTE
T ss_pred eEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCCe
Confidence 9999987653 2233 34677999999998766543 3 368999999999876554432
Q ss_pred ----------eeEEeecCCCceE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 722 ----------TLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 722 ----------~I~iwd~~~~~~~-~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
.|++||+.+++.+ ++.+|.+.|++|+|+|++.+|+||+.||+|+|||
T Consensus 335 lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWd 392 (420)
T 4gga_A 335 LISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 392 (420)
T ss_dssp EEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEEC
T ss_pred EEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEE
Confidence 6999999887765 6789999999999999999999999999999997
No 30
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.97 E-value=4.3e-29 Score=272.63 Aligned_cols=233 Identities=21% Similarity=0.358 Sum_probs=197.9
Q ss_pred ccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 004207 502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVL 581 (768)
Q Consensus 502 l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~V 581 (768)
+.+.+.+|++|+.|++|++|+.... .....+..|...|.+++|+|++.+|++|+.|+.|++
T Consensus 72 ~s~d~~~l~s~s~Dg~v~vWd~~~~-------------------~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v 132 (354)
T 2pbi_B 72 WCKDKRRIVSSSQDGKVIVWDSFTT-------------------NKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSV 132 (354)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTC-------------------CEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEE
T ss_pred ECCCCCEEEEEeCCCeEEEEECCCC-------------------CcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEE
Confidence 3445679999999999999964322 234456678899999999999999999999999999
Q ss_pred EECCCC------eEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCC-Ce
Q 004207 582 WCTESF------TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK-ED 654 (768)
Q Consensus 582 Wdl~t~------~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g-~~ 654 (768)
|++... .....+.+|...|.+++|+|++..|++++.|++|++||+++++. +..+.+|...|.+++|+|+. ..
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~-~~~~~~h~~~v~~~~~~~~~~g~ 211 (354)
T 2pbi_B 133 YPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQL-LQSFHGHGADVLCLDLAPSETGN 211 (354)
T ss_dssp EECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCE-EEEEECCSSCEEEEEECCCSSCC
T ss_pred EEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeE-EEEEcCCCCCeEEEEEEeCCCCC
Confidence 998643 34556778999999999999999999999999999999998775 78889999999999999853 35
Q ss_pred EEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCce
Q 004207 655 LLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKT 733 (768)
Q Consensus 655 lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~ 733 (768)
+|++|+.|+.|++||+++++++..+.. ...|.+++|+|++.+|++++.|+.|++||+++...... +.
T Consensus 212 ~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~------~~------ 279 (354)
T 2pbi_B 212 TFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAI------YS------ 279 (354)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE------EC------
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEE------Ec------
Confidence 788999999999999999999988875 56799999999999999999999999999988654321 11
Q ss_pred EEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 734 LTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 734 ~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
...+...+.+++|+|++.+|++|+.|+.|+|||
T Consensus 280 --~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd 312 (354)
T 2pbi_B 280 --KESIIFGASSVDFSLSGRLLFAGYNDYTINVWD 312 (354)
T ss_dssp --CTTCCSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred --CCCcccceeEEEEeCCCCEEEEEECCCcEEEEE
Confidence 112345689999999999999999999999996
No 31
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=99.97 E-value=4.9e-29 Score=268.68 Aligned_cols=220 Identities=22% Similarity=0.350 Sum_probs=193.9
Q ss_pred EEEEecCCCCCeEEEEEcCC----CCEEEEEeCCCcEEEEECCCCeE--EEEeccCCCCEEEEEEcCCCCEEEEEeCCCc
Q 004207 547 EFQLIPASTSKVESCHFSPD----GKLLATGGHDKKAVLWCTESFTV--KSTLEEHTQWITDVRFSPSLSRLATSSADRT 620 (768)
Q Consensus 547 ~~~~l~~H~~~I~sl~fSpd----g~~LaSgs~Dg~I~VWdl~t~~~--~~tl~~h~~~V~sl~fspdg~~LaTgs~Dgt 620 (768)
.++.+.+|.+.|++|+|+++ +.+|++|+.|++|+||++.+.+. ...+.+|...|.+++|++++.++++++.|++
T Consensus 24 ~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~ 103 (321)
T 3ow8_A 24 LFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAH 103 (321)
T ss_dssp EEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSE
T ss_pred eeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCc
Confidence 35667899999999999984 66899999999999999887654 4568999999999999999999999999999
Q ss_pred EEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEE
Q 004207 621 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILA 699 (768)
Q Consensus 621 IrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~lla 699 (768)
|+|||+++++. +..+..|...+.+++|+|++. +|++|+.|+.|++||+++++....+.. ...+.+++|+|++.+|++
T Consensus 104 i~lWd~~~~~~-~~~~~~~~~~~~~~~~spdg~-~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~las 181 (321)
T 3ow8_A 104 IRLWDLENGKQ-IKSIDAGPVDAWTLAFSPDSQ-YLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLAS 181 (321)
T ss_dssp EEEEETTTTEE-EEEEECCTTCCCCEEECTTSS-EEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEE
T ss_pred EEEEECCCCCE-EEEEeCCCccEEEEEECCCCC-EEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEE
Confidence 99999998765 777888889999999999987 666899999999999999988887775 456999999999999999
Q ss_pred EEcCCeEEEEECCCceEeeecc-------------------------eeEEeecCCCceE-EeccCCCCeeEEEEeCCCC
Q 004207 700 AAIENYISILDVETQVCRLKLQ-------------------------TLELWNMTENKTL-TLSAHDKLVSSLAASTVNG 753 (768)
Q Consensus 700 gs~Dg~I~IwD~~t~~~~~~~~-------------------------~I~iwd~~~~~~~-~l~~H~~~I~sla~spdg~ 753 (768)
++.|+.|++||++++.....+. .|++||+..+... .+.+|...|.+++|+|++.
T Consensus 182 g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~ 261 (321)
T 3ow8_A 182 GAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDT 261 (321)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS
T ss_pred EcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCC
Confidence 9999999999999887654432 7999999877655 6779999999999999999
Q ss_pred EEEEEECCCcEEEeC
Q 004207 754 MVASASHDKCVKIWK 768 (768)
Q Consensus 754 ~LaSgs~DG~V~IWD 768 (768)
+|++++.||+|+|||
T Consensus 262 ~l~s~s~D~~v~iwd 276 (321)
T 3ow8_A 262 HFVSSSSDKSVKVWD 276 (321)
T ss_dssp EEEEEETTSCEEEEE
T ss_pred EEEEEeCCCcEEEEe
Confidence 999999999999996
No 32
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.97 E-value=7.5e-29 Score=267.84 Aligned_cols=252 Identities=18% Similarity=0.242 Sum_probs=208.1
Q ss_pred CccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCc
Q 004207 499 PNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKK 578 (768)
Q Consensus 499 ~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~ 578 (768)
...+.+.+.++++|+.|+.|++|..... .+..+..+.+|...|.+++|+|++++|++++.|+.
T Consensus 13 ~~~~s~~~~~l~~~~~d~~v~i~~~~~~-----------------~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~ 75 (372)
T 1k8k_C 13 CHAWNKDRTQIAICPNNHEVHIYEKSGN-----------------KWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRN 75 (372)
T ss_dssp EEEECTTSSEEEEECSSSEEEEEEEETT-----------------EEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSC
T ss_pred EEEECCCCCEEEEEeCCCEEEEEeCCCC-----------------cEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCe
Confidence 3344556789999999999999954321 23467778899999999999999999999999999
Q ss_pred EEEEECCCCeEEEE--eccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCe---eEEEeecCCCCeEEEEEeCCCC
Q 004207 579 AVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY---SLRTFTGHSTTVMSLDFHPSKE 653 (768)
Q Consensus 579 I~VWdl~t~~~~~t--l~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~---~~~~~~~h~~~V~slafsp~g~ 653 (768)
|++||+++++.... +..|...|.+++|+|++++|++++.|+.|++||++.... ......+|...|.+++|+|++.
T Consensus 76 i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 155 (372)
T 1k8k_C 76 AYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSV 155 (372)
T ss_dssp EEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSS
T ss_pred EEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCC
Confidence 99999988875544 467899999999999999999999999999999987663 2344467899999999999976
Q ss_pred eEEEEEeCCCcEEEEECC------------------CCeeEEEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCc
Q 004207 654 DLLCSCDNNSEIRYWSIN------------------NGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQ 714 (768)
Q Consensus 654 ~lLaSgs~Dg~I~iWDl~------------------sg~~i~~~~~-~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~ 714 (768)
+|++++.|+.|++||++ .++++..+.. ...+.+++|+|++.+|++++.|+.|++||+++.
T Consensus 156 -~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~ 234 (372)
T 1k8k_C 156 -LLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKK 234 (372)
T ss_dssp -EEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGT
T ss_pred -EEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence 66688999999999954 5777777754 567999999999999999999999999999876
Q ss_pred eEeeecc------------------------eeEEeecCC--Cce-----------------------------------
Q 004207 715 VCRLKLQ------------------------TLELWNMTE--NKT----------------------------------- 733 (768)
Q Consensus 715 ~~~~~~~------------------------~I~iwd~~~--~~~----------------------------------- 733 (768)
.....+. .+++|++.. +..
T Consensus 235 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (372)
T 1k8k_C 235 MAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGS 314 (372)
T ss_dssp TEEEEEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC-----
T ss_pred ceeEEEccCCCCeEEEEEecCCCEEEEEeCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccC
Confidence 5544332 788898876 321
Q ss_pred ----EEe-ccCCCCeeEEEEe-CCC---CEEEEEECCCcEEEeC
Q 004207 734 ----LTL-SAHDKLVSSLAAS-TVN---GMVASASHDKCVKIWK 768 (768)
Q Consensus 734 ----~~l-~~H~~~I~sla~s-pdg---~~LaSgs~DG~V~IWD 768 (768)
..+ .+|...|++++|+ +++ .+|+||+.||.|+|||
T Consensus 315 ~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~ 358 (372)
T 1k8k_C 315 AAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD 358 (372)
T ss_dssp ----CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEE
T ss_pred ccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEE
Confidence 222 4899999999976 666 8999999999999996
No 33
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.97 E-value=5e-30 Score=275.23 Aligned_cols=241 Identities=15% Similarity=0.206 Sum_probs=194.4
Q ss_pred CccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcC--CCCEEEEEeCC
Q 004207 499 PNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--DGKLLATGGHD 576 (768)
Q Consensus 499 ~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSp--dg~~LaSgs~D 576 (768)
...+.+.+.+|++|+.|++|++|+.... ....+..+.+|.+.|++++|++ ++++|++|+.|
T Consensus 18 ~v~~s~~g~~lasgs~D~~v~lwd~~~~-----------------~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D 80 (316)
T 3bg1_A 18 DAQMDYYGTRLATCSSDRSVKIFDVRNG-----------------GQILIADLRGHEGPVWQVAWAHPMYGNILASCSYD 80 (316)
T ss_dssp EEEECGGGCEEEEEETTTEEEEEEEETT-----------------EEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETT
T ss_pred EeeEcCCCCEEEEEeCCCeEEEEEecCC-----------------CcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECC
Confidence 3344455679999999999999965321 1124567889999999999986 48999999999
Q ss_pred CcEEEEECCCC--eEEEEeccCCCCEEEEEEcCC--CCEEEEEeCCCcEEEEECCCCCe--eEEEeecCCCCeEEEEEeC
Q 004207 577 KKAVLWCTESF--TVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVWDTENPDY--SLRTFTGHSTTVMSLDFHP 650 (768)
Q Consensus 577 g~I~VWdl~t~--~~~~tl~~h~~~V~sl~fspd--g~~LaTgs~DgtIrVWDl~t~~~--~~~~~~~h~~~V~slafsp 650 (768)
++|+|||++++ +....+.+|...|.+++|+|+ +.+|++|+.|++|++||++.... ....+.+|...|.+++|+|
T Consensus 81 ~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~ 160 (316)
T 3bg1_A 81 RKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAP 160 (316)
T ss_dssp SCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECC
T ss_pred CEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEcc
Confidence 99999999886 466778899999999999997 78999999999999999987532 2345678999999999999
Q ss_pred CC----------------CeEEEEEeCCCcEEEEECCCC---eeEEEEec-CCCeeEEEEecCC----CEEEEEEcCCeE
Q 004207 651 SK----------------EDLLCSCDNNSEIRYWSINNG---SCAGVFKC-QSGATQMRFQPRL----GRILAAAIENYI 706 (768)
Q Consensus 651 ~g----------------~~lLaSgs~Dg~I~iWDl~sg---~~i~~~~~-~~~i~sl~fsp~~----~~llags~Dg~I 706 (768)
+. ..+|++|+.|+.|++||++.. .++..+.. ...|.+++|+|++ .+|++++.|++|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v 240 (316)
T 3bg1_A 161 AVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRV 240 (316)
T ss_dssp CCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEE
T ss_pred ccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeE
Confidence 73 246889999999999999765 34555553 4669999999986 789999999999
Q ss_pred EEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 707 SILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 707 ~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
++||+.+..... .....+..|...|.+++|+|++.+|++++.||.|+||+
T Consensus 241 ~iw~~~~~~~~~------------~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~ 290 (316)
T 3bg1_A 241 FIWTCDDASSNT------------WSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWK 290 (316)
T ss_dssp EEEECSSTTCCC------------CBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEE
T ss_pred EEEEccCccccc------------hhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEE
Confidence 999987631100 00112346888999999999999999999999999996
No 34
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=5.1e-29 Score=263.88 Aligned_cols=254 Identities=20% Similarity=0.267 Sum_probs=199.8
Q ss_pred ccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcC--CCCEEEEEeCCC
Q 004207 500 NQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--DGKLLATGGHDK 577 (768)
Q Consensus 500 ~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSp--dg~~LaSgs~Dg 577 (768)
..+.+.+.++++|+.|+.|++|..... ...+.....+.+|...|++++|+| ++.+|++|+.||
T Consensus 17 ~~~~~~~~~l~~~~~dg~i~iw~~~~~---------------~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg 81 (351)
T 3f3f_A 17 VVYDFYGRHVATCSSDQHIKVFKLDKD---------------TSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDK 81 (351)
T ss_dssp EEECSSSSEEEEEETTSEEEEEEECSS---------------SCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred EEEcCCCCEEEEeeCCCeEEEEECCCC---------------CCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCC
Confidence 334446679999999999999966432 122345677789999999999999 699999999999
Q ss_pred cEEEEECCCC---------eEEEEeccCCCCEEEEEEcCC--CCEEEEEeCCCcEEEEECCCCCeeEE------------
Q 004207 578 KAVLWCTESF---------TVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVWDTENPDYSLR------------ 634 (768)
Q Consensus 578 ~I~VWdl~t~---------~~~~tl~~h~~~V~sl~fspd--g~~LaTgs~DgtIrVWDl~t~~~~~~------------ 634 (768)
.|+|||+.++ +.+..+..|...|.+++|+|+ +.+|++++.||+|++||+++++....
T Consensus 82 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 161 (351)
T 3f3f_A 82 TVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSI 161 (351)
T ss_dssp CEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSC
T ss_pred eEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccccccc
Confidence 9999999886 667888899999999999999 99999999999999999987653111
Q ss_pred EeecCCCCeEEEEEeCC--CCeEEEEEeCCCcEEEEECCCCee--EEEEe-cCCCeeEEEEecCC----CEEEEEEcCCe
Q 004207 635 TFTGHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINNGSC--AGVFK-CQSGATQMRFQPRL----GRILAAAIENY 705 (768)
Q Consensus 635 ~~~~h~~~V~slafsp~--g~~lLaSgs~Dg~I~iWDl~sg~~--i~~~~-~~~~i~sl~fsp~~----~~llags~Dg~ 705 (768)
....|...+.+++|+|+ ...++++++.|+.+.+|+...+.. +..+. +...|.+++|+|++ .+|++++.|+.
T Consensus 162 ~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~ 241 (351)
T 3f3f_A 162 PPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGR 241 (351)
T ss_dssp CCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSC
T ss_pred ccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCe
Confidence 01257889999999997 344777899999998888887765 44444 35679999999998 78999999999
Q ss_pred EEEEECCCceEeeecc-----------------------------eeEEeecCCCc-eEEeccCCCCeeEEEEeCCCCEE
Q 004207 706 ISILDVETQVCRLKLQ-----------------------------TLELWNMTENK-TLTLSAHDKLVSSLAASTVNGMV 755 (768)
Q Consensus 706 I~IwD~~t~~~~~~~~-----------------------------~I~iwd~~~~~-~~~l~~H~~~I~sla~spdg~~L 755 (768)
|++||+++........ .+.+|+..... ...+.+|...|++++|+|++.+|
T Consensus 242 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l 321 (351)
T 3f3f_A 242 IRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTIL 321 (351)
T ss_dssp EEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCE
T ss_pred EEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEE
Confidence 9999998753221110 22333333323 23567899999999999999999
Q ss_pred EEEECCCcEEEeC
Q 004207 756 ASASHDKCVKIWK 768 (768)
Q Consensus 756 aSgs~DG~V~IWD 768 (768)
++++.||.|+|||
T Consensus 322 ~s~~~dg~v~iw~ 334 (351)
T 3f3f_A 322 SSAGDDGKVRLWK 334 (351)
T ss_dssp EEEETTSCEEEEE
T ss_pred EEecCCCcEEEEe
Confidence 9999999999996
No 35
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.97 E-value=3e-28 Score=265.76 Aligned_cols=258 Identities=15% Similarity=0.263 Sum_probs=212.2
Q ss_pred cCccccC-CCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEE-----EecCCCCCeEEEEEcC-CCCEE
Q 004207 498 APNQLTD-MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQ-----LIPASTSKVESCHFSP-DGKLL 570 (768)
Q Consensus 498 ~~~~l~~-~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~-----~l~~H~~~I~sl~fSp-dg~~L 570 (768)
....+.+ .+.++++|+.|+.|++|........... ...... ...+|...|++++|+| ++.+|
T Consensus 47 ~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 115 (408)
T 4a11_B 47 NTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYY-----------TCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMF 115 (408)
T ss_dssp EEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCE-----------EECEEEEECTTCTTCCSSCEEEEEECTTCTTCE
T ss_pred EEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceE-----------eccccccccccccccCCCcEEEEEEccCCCcEE
Confidence 3444455 6789999999999999976544211110 001111 1246999999999999 77899
Q ss_pred EEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCC---CCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEE
Q 004207 571 ATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS---LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLD 647 (768)
Q Consensus 571 aSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspd---g~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~sla 647 (768)
++++.||.|++||+.+++.+..+. +...+.++.|++. +.+|++++.|+.|++||++++.. +..+.+|...|.+++
T Consensus 116 ~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~-~~~~~~~~~~v~~~~ 193 (408)
T 4a11_B 116 TSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSC-SHILQGHRQEILAVS 193 (408)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCC-CEEECCCCSCEEEEE
T ss_pred EEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcce-eeeecCCCCcEEEEE
Confidence 999999999999999999888776 6788999999984 45999999999999999998765 778888999999999
Q ss_pred EeCCCCeEEEEEeCCCcEEEEECCCCe-eEEEE----------------ecCCCeeEEEEecCCCEEEEEEcCCeEEEEE
Q 004207 648 FHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVF----------------KCQSGATQMRFQPRLGRILAAAIENYISILD 710 (768)
Q Consensus 648 fsp~g~~lLaSgs~Dg~I~iWDl~sg~-~i~~~----------------~~~~~i~sl~fsp~~~~llags~Dg~I~IwD 710 (768)
|+|++..+|++|+.||.|++||++++. ++..+ .+...|.+++|+|++.+|++++.|+.|++||
T Consensus 194 ~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd 273 (408)
T 4a11_B 194 WSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWN 273 (408)
T ss_dssp ECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred ECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEE
Confidence 999998888899999999999998765 34433 2356799999999999999999999999999
Q ss_pred CCCceEeee------------------------------cceeEEeecCCCceE-EeccCCCCeeEEEEeCCCCEEEEEE
Q 004207 711 VETQVCRLK------------------------------LQTLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASAS 759 (768)
Q Consensus 711 ~~t~~~~~~------------------------------~~~I~iwd~~~~~~~-~l~~H~~~I~sla~spdg~~LaSgs 759 (768)
+.+...... ...+.+||+.++..+ .+.+|...|++++|+|++.+|++++
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 353 (408)
T 4a11_B 274 SSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGS 353 (408)
T ss_dssp TTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEE
T ss_pred CCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEEC
Confidence 987653221 127999999887766 5678999999999999999999999
Q ss_pred CCCcEEEeC
Q 004207 760 HDKCVKIWK 768 (768)
Q Consensus 760 ~DG~V~IWD 768 (768)
.||.|+|||
T Consensus 354 ~dg~i~iw~ 362 (408)
T 4a11_B 354 RDCNILAWV 362 (408)
T ss_dssp TTSCEEEEE
T ss_pred CCCeEEEEe
Confidence 999999996
No 36
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.97 E-value=7.5e-29 Score=269.36 Aligned_cols=209 Identities=26% Similarity=0.465 Sum_probs=180.1
Q ss_pred eeEEEEecCCCC-CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE---EeccCCCCEEEEEEcCCCCEEEEEeCCCc
Q 004207 545 FTEFQLIPASTS-KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS---TLEEHTQWITDVRFSPSLSRLATSSADRT 620 (768)
Q Consensus 545 ~~~~~~l~~H~~-~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~---tl~~h~~~V~sl~fspdg~~LaTgs~Dgt 620 (768)
+..+..+.+|.+ .|.+++|+|+|++||+|+.|++|+|||+.+++... ...+|...|.+++|+|++++|++|+.|++
T Consensus 5 ~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~ 84 (345)
T 3fm0_A 5 LVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDAT 84 (345)
T ss_dssp EEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred EEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCc
Confidence 456788899988 99999999999999999999999999998876432 23689999999999999999999999999
Q ss_pred EEEEECCCCC-eeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCe---eEEEEec-CCCeeEEEEecCCC
Q 004207 621 VRVWDTENPD-YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS---CAGVFKC-QSGATQMRFQPRLG 695 (768)
Q Consensus 621 IrVWDl~t~~-~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~---~i~~~~~-~~~i~sl~fsp~~~ 695 (768)
|+|||+..+. ..+..+.+|...|.+++|+|++. +|++|+.|+.|++||++.+. ++..+.. ...|.+++|+|++.
T Consensus 85 v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~ 163 (345)
T 3fm0_A 85 TCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGN-LLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE 163 (345)
T ss_dssp EEEEEECCC-EEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSS
T ss_pred EEEEEccCCCeEEEEEccCCCCCceEEEEeCCCC-EEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCC
Confidence 9999998765 34678899999999999999976 67799999999999998764 3444443 56799999999999
Q ss_pred EEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 696 RILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 696 ~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
+|++++.|+.|++||.++..... ...+.+|...|++++|+|++.+|++++.||+|+|||
T Consensus 164 ~l~s~s~d~~i~~w~~~~~~~~~--------------~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~ 222 (345)
T 3fm0_A 164 LLASASYDDTVKLYREEEDDWVC--------------CATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWR 222 (345)
T ss_dssp CEEEEETTSCEEEEEEETTEEEE--------------EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EEEEEeCCCcEEEEEecCCCEEE--------------EEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEec
Confidence 99999999999999987653211 224568999999999999999999999999999996
No 37
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.97 E-value=6.9e-29 Score=273.84 Aligned_cols=273 Identities=14% Similarity=0.167 Sum_probs=218.9
Q ss_pred ccCCCCCceEEEEecCCCC------c-ccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeE
Q 004207 475 QHNGASSKSLLMFGSDGMG------S-LTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTE 547 (768)
Q Consensus 475 ~~s~s~~~~~l~~~~~~~~------~-~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~ 547 (768)
...++.+..+.+|...... . .......+...+.++++|+.|+.|++|..... ..
T Consensus 71 l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-------------------~~ 131 (420)
T 3vl1_A 71 LYKARLDGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFN-------------------LQ 131 (420)
T ss_dssp EEEEEETTEEEEEECCSEETTTTSCSCCEEEEEEECSSSCEEEEEETTSCEEEECTTSC-------------------EE
T ss_pred EEEEEcCCcEEEEEecccceeeEEecCCceEEEEEecCCCEEEEEECCCCEEEEeCCCc-------------------ce
Confidence 3445556778888765421 1 11122245667889999999999999954321 33
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004207 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (768)
Q Consensus 548 ~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~ 627 (768)
...+.+|.+.|++++|+|++++|++|+.|+.|+|||+.+++.+..+.+|...|++++|+|++++|++++.|++|++||++
T Consensus 132 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~ 211 (420)
T 3vl1_A 132 REIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECG 211 (420)
T ss_dssp EEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETT
T ss_pred eeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECC
Confidence 55667999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeEEEeec---CCCCeEEEEE---------------------eCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec--
Q 004207 628 NPDYSLRTFTG---HSTTVMSLDF---------------------HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-- 681 (768)
Q Consensus 628 t~~~~~~~~~~---h~~~V~slaf---------------------sp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-- 681 (768)
+++. +..+.. |...|.+++| +|++. +|++|+.||.|++||+++++.+..+..
T Consensus 212 ~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 289 (420)
T 3vl1_A 212 TGTT-IHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGK-YVIAGHVSGVITVHNVFSKEQTIQLPSKF 289 (420)
T ss_dssp TTEE-EEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTE-EEEEEETTSCEEEEETTTCCEEEEECCTT
T ss_pred CCce-eEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCC-EEEEEcCCCeEEEEECCCCceeEEccccc
Confidence 8764 555553 4445555555 56655 677899999999999999988877753
Q ss_pred CCCeeEEEEecCCC-EEEEEEcCCeEEEEECCCceE-eeecc-------------------------eeEEeecCC----
Q 004207 682 QSGATQMRFQPRLG-RILAAAIENYISILDVETQVC-RLKLQ-------------------------TLELWNMTE---- 730 (768)
Q Consensus 682 ~~~i~sl~fsp~~~-~llags~Dg~I~IwD~~t~~~-~~~~~-------------------------~I~iwd~~~---- 730 (768)
...+.+++|+|++. +|++++.|+.|++||+++... ...+. .|++|++..
T Consensus 290 ~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~ 369 (420)
T 3vl1_A 290 TCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISDPESE 369 (420)
T ss_dssp SSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEEECCTTCC
T ss_pred CCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEeccCCCCC
Confidence 46799999999998 999999999999999987532 11111 899999876
Q ss_pred ------CceEEeccCCCCeeEEEEeCCCC---EEEEEECCCcEEEeC
Q 004207 731 ------NKTLTLSAHDKLVSSLAASTVNG---MVASASHDKCVKIWK 768 (768)
Q Consensus 731 ------~~~~~l~~H~~~I~sla~spdg~---~LaSgs~DG~V~IWD 768 (768)
.....+..|...|.+++|+|++. .|++++.+|.+.+|+
T Consensus 370 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~ 416 (420)
T 3vl1_A 370 RPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYN 416 (420)
T ss_dssp SCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEE
T ss_pred ccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEe
Confidence 23335668899999999999999 788888999999995
No 38
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.97 E-value=1.6e-28 Score=261.19 Aligned_cols=222 Identities=27% Similarity=0.478 Sum_probs=194.5
Q ss_pred eeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 004207 545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624 (768)
Q Consensus 545 ~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVW 624 (768)
+.....+.+|.+.|++++|+|++++|++|+.||.|+||++.+++....+.+|...|.+++|+|++++|++++.|++|+||
T Consensus 13 ~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vw 92 (312)
T 4ery_A 13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW 92 (312)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred ceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEE
Confidence 44567788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEEcC
Q 004207 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIE 703 (768)
Q Consensus 625 Dl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags~D 703 (768)
|+++++. +..+.+|...|.+++|+|++. +|++|+.|+.|++||+++++++..+.. ...|.+++|+|++.++++++.|
T Consensus 93 d~~~~~~-~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 170 (312)
T 4ery_A 93 DVSSGKC-LKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 170 (312)
T ss_dssp ETTTCCE-EEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred ECCCCcE-EEEEcCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCC
Confidence 9998775 788889999999999999976 667999999999999999999888875 5679999999999999999999
Q ss_pred CeEEEEECCCceEeeecc--------------------------eeEEeecCCCceE-EeccCCCCeeE--EEE-eCCCC
Q 004207 704 NYISILDVETQVCRLKLQ--------------------------TLELWNMTENKTL-TLSAHDKLVSS--LAA-STVNG 753 (768)
Q Consensus 704 g~I~IwD~~t~~~~~~~~--------------------------~I~iwd~~~~~~~-~l~~H~~~I~s--la~-spdg~ 753 (768)
+.|++||+++......+. .|++||+.+++.. .+.+|...+.+ ..+ .+++.
T Consensus 171 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (312)
T 4ery_A 171 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 250 (312)
T ss_dssp SCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSC
T ss_pred CcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCc
Confidence 999999998865443221 7899999888765 45677665433 233 36788
Q ss_pred EEEEEECCCcEEEeC
Q 004207 754 MVASASHDKCVKIWK 768 (768)
Q Consensus 754 ~LaSgs~DG~V~IWD 768 (768)
+|++|+.||.|+|||
T Consensus 251 ~l~sg~~dg~i~vwd 265 (312)
T 4ery_A 251 WIVSGSEDNLVYIWN 265 (312)
T ss_dssp EEEECCTTSCEEEEE
T ss_pred EEEEECCCCEEEEEE
Confidence 999999999999996
No 39
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.97 E-value=2.6e-28 Score=269.94 Aligned_cols=257 Identities=18% Similarity=0.292 Sum_probs=219.0
Q ss_pred cCCCCCceEEEEecCCC---------CcccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceee
Q 004207 476 HNGASSKSLLMFGSDGM---------GSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFT 546 (768)
Q Consensus 476 ~s~s~~~~~l~~~~~~~---------~~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~ 546 (768)
..++.+..+.+|..... +...+....+.+.+.++++|+.|+.|++|..... .
T Consensus 107 ~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~-------------------~ 167 (401)
T 4aez_A 107 VAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQ-------------------T 167 (401)
T ss_dssp EEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTC-------------------C
T ss_pred EEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCC-------------------e
Confidence 33445677777776543 1233445667778899999999999999965332 2
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC-CCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004207 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE-SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (768)
Q Consensus 547 ~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~-t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWD 625 (768)
.+..+.+|...|.+++| ++.+|++|+.||.|++||+. ....+..+.+|...|.+++|+|++.+|++|+.|++|++||
T Consensus 168 ~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd 245 (401)
T 4aez_A 168 KLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWD 245 (401)
T ss_dssp EEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEcc
Confidence 45667799999999999 56899999999999999998 5677888899999999999999999999999999999999
Q ss_pred CCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEe--CCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEE--
Q 004207 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD--NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA-- 701 (768)
Q Consensus 626 l~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs--~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags-- 701 (768)
++++.. +..+..|...|.+++|+|++..++++++ .|+.|++||+++++++..+.....+.+++|+|++.++++++
T Consensus 246 ~~~~~~-~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~ 324 (401)
T 4aez_A 246 ARSSIP-KFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGF 324 (401)
T ss_dssp TTCSSE-EEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECT
T ss_pred CCCCCc-cEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeec
Confidence 998665 6778889999999999999888998876 79999999999999999999889999999999999999865
Q ss_pred cCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 702 IENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 702 ~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
.|+.|++||+.+..... ...+.+|...|.+++|+|++.+|++++.||.|+|||
T Consensus 325 ~dg~i~v~~~~~~~~~~--------------~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~ 377 (401)
T 4aez_A 325 PDNNLSIWSYSSSGLTK--------------QVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWR 377 (401)
T ss_dssp TTCEEEEEEEETTEEEE--------------EEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEE
T ss_pred CCCcEEEEecCCcccee--------------EEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence 79999999988754322 123458999999999999999999999999999996
No 40
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.97 E-value=1.2e-28 Score=264.71 Aligned_cols=207 Identities=20% Similarity=0.356 Sum_probs=179.7
Q ss_pred ceeeEEEEecCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCC-----CeEEEEeccCCCCEEEEEEcCCCCEEEEEe
Q 004207 543 FTFTEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTES-----FTVKSTLEEHTQWITDVRFSPSLSRLATSS 616 (768)
Q Consensus 543 ~~~~~~~~l~~H~~~I~sl~fSpdg-~~LaSgs~Dg~I~VWdl~t-----~~~~~tl~~h~~~V~sl~fspdg~~LaTgs 616 (768)
..+.....+.+|.+.|++++|+|++ ++|++|+.|++|++|++.. +.++..+.+|...|.+++|+|++++|++|+
T Consensus 5 ~~~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s 84 (319)
T 3frx_A 5 EVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSAS 84 (319)
T ss_dssp EEEEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred eEEEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEe
Confidence 3456677899999999999999965 8999999999999999864 345678899999999999999999999999
Q ss_pred CCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEe-cCCCeeEEEEecCC-
Q 004207 617 ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRL- 694 (768)
Q Consensus 617 ~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~-~~~~i~sl~fsp~~- 694 (768)
.|++|+|||+++++. +..+.+|...|.+++|+|++. +|++|+.|++|++||++. .++..+. +...+.++.|.|..
T Consensus 85 ~D~~v~~wd~~~~~~-~~~~~~h~~~v~~~~~~~~~~-~l~s~s~D~~i~vwd~~~-~~~~~~~~h~~~v~~~~~~~~~~ 161 (319)
T 3frx_A 85 WDKTLRLWDVATGET-YQRFVGHKSDVMSVDIDKKAS-MIISGSRDKTIKVWTIKG-QCLATLLGHNDWVSQVRVVPNEK 161 (319)
T ss_dssp TTSEEEEEETTTTEE-EEEEECCSSCEEEEEECTTSC-EEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECCC--
T ss_pred CCCEEEEEECCCCCe-eEEEccCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCC-CeEEEEeccCCcEEEEEEccCCC
Confidence 999999999998765 788899999999999999976 667999999999999985 4555554 45679999999853
Q ss_pred -----CEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 695 -----GRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 695 -----~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
..+++++.|+.|++||+++..... .+.+|...|++++|+|++.+|++++.||.|+|||
T Consensus 162 ~~~~~~~l~s~~~d~~i~~wd~~~~~~~~----------------~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd 224 (319)
T 3frx_A 162 ADDDSVTIISAGNDKMVKAWNLNQFQIEA----------------DFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224 (319)
T ss_dssp ----CCEEEEEETTSCEEEEETTTTEEEE----------------EECCCCSCEEEEEECTTSSEEEEEETTCEEEEEE
T ss_pred CCCCccEEEEEeCCCEEEEEECCcchhhe----------------eecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence 479999999999999998765432 3458999999999999999999999999999997
No 41
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.6e-28 Score=265.24 Aligned_cols=241 Identities=16% Similarity=0.215 Sum_probs=198.9
Q ss_pred ccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCC--CCEEEEEeCCC
Q 004207 500 NQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD--GKLLATGGHDK 577 (768)
Q Consensus 500 ~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpd--g~~LaSgs~Dg 577 (768)
..+.+.+.+|++|+.|+.|++|.... .....+..+.+|.+.|++++|+++ +.+|++|+.||
T Consensus 17 ~~~s~~~~~l~~~~~dg~i~iw~~~~-----------------~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg 79 (379)
T 3jrp_A 17 AVLDYYGKRLATCSSDKTIKIFEVEG-----------------ETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG 79 (379)
T ss_dssp EEECSSSSEEEEEETTSCEEEEEEET-----------------TEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred EEEcCCCCEEEEEECCCcEEEEecCC-----------------CcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCC
Confidence 33445677999999999999995531 133556778899999999999987 99999999999
Q ss_pred cEEEEECCCCe--EEEEeccCCCCEEEEEEcCC--CCEEEEEeCCCcEEEEECCCCC-eeEEEeecCCCCeEEEEEeCC-
Q 004207 578 KAVLWCTESFT--VKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVWDTENPD-YSLRTFTGHSTTVMSLDFHPS- 651 (768)
Q Consensus 578 ~I~VWdl~t~~--~~~tl~~h~~~V~sl~fspd--g~~LaTgs~DgtIrVWDl~t~~-~~~~~~~~h~~~V~slafsp~- 651 (768)
.|+|||+.+++ .+..+..|...|.+++|+|+ +.+|++++.|++|++||++... .....+..|...|.+++|+|.
T Consensus 80 ~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 159 (379)
T 3jrp_A 80 KVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPAT 159 (379)
T ss_dssp CEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC
T ss_pred EEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcc
Confidence 99999999987 77788889999999999999 9999999999999999998764 234567789999999999994
Q ss_pred -----------CCeEEEEEeCCCcEEEEECCCCe----eEEEEe-cCCCeeEEEEecC---CCEEEEEEcCCeEEEEECC
Q 004207 652 -----------KEDLLCSCDNNSEIRYWSINNGS----CAGVFK-CQSGATQMRFQPR---LGRILAAAIENYISILDVE 712 (768)
Q Consensus 652 -----------g~~lLaSgs~Dg~I~iWDl~sg~----~i~~~~-~~~~i~sl~fsp~---~~~llags~Dg~I~IwD~~ 712 (768)
...+|++|+.|+.|++||++++. ++..+. +...|.+++|+|+ +.+|++++.|+.|++||++
T Consensus 160 ~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~ 239 (379)
T 3jrp_A 160 IEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQD 239 (379)
T ss_dssp ----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEES
T ss_pred ccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCC
Confidence 24477799999999999998764 333444 3567999999999 8899999999999999998
Q ss_pred CceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 713 TQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 713 t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
+....... .......|...|++++|+|++.+|++++.||.|+|||
T Consensus 240 ~~~~~~~~-----------~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~ 284 (379)
T 3jrp_A 240 NEQGPWKK-----------TLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK 284 (379)
T ss_dssp STTSCCEE-----------EESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEE
T ss_pred CCCcccee-----------eeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEe
Confidence 75321100 0112235888999999999999999999999999996
No 42
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.97 E-value=7.5e-28 Score=254.22 Aligned_cols=242 Identities=19% Similarity=0.344 Sum_probs=200.5
Q ss_pred CCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004207 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (768)
Q Consensus 506 ~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~ 585 (768)
+++|++| .|++|++|+...+. ......+.+|...|++++|+|++++|++|+.||+|+|||++
T Consensus 36 ~~~lAvg-~D~tV~iWd~~tg~-----------------~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~ 97 (318)
T 4ggc_A 36 GNVLAVA-LDNSVYLWSASSGD-----------------ILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQ 97 (318)
T ss_dssp TSEEEEE-ETTEEEEEETTTCC-----------------EEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred CCEEEEE-eCCEEEEEECCCCC-----------------EEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecC
Confidence 3477877 49999999654331 11233456888999999999999999999999999999999
Q ss_pred CCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcE
Q 004207 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 665 (768)
Q Consensus 586 t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I 665 (768)
+++++..+.+|...+.++.+. +.+|++++.++.+++|+.......+..+.+|...+.++.|++++. +|++++.|+.|
T Consensus 98 ~~~~~~~~~~h~~~~~~~~~~--~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~d~~i 174 (318)
T 4ggc_A 98 QQKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGR-HLASGGNDNLV 174 (318)
T ss_dssp TTEEEEEEECCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCE
T ss_pred CceeEEEecCccceEEEeecC--CCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCC-EEEEEecCcce
Confidence 999999999999988877665 579999999999999999988877889999999999999999977 66699999999
Q ss_pred EEEECCCCeeE-----EEEecCCCeeEEEEecCCCEEE---EEEcCCeEEEEECCCceEeeec-----------------
Q 004207 666 RYWSINNGSCA-----GVFKCQSGATQMRFQPRLGRIL---AAAIENYISILDVETQVCRLKL----------------- 720 (768)
Q Consensus 666 ~iWDl~sg~~i-----~~~~~~~~i~sl~fsp~~~~ll---ags~Dg~I~IwD~~t~~~~~~~----------------- 720 (768)
++||+++++.. ........|..+.++|.+..++ +++.++.|++||..........
T Consensus 175 ~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~ 254 (318)
T 4ggc_A 175 NVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKE 254 (318)
T ss_dssp EEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTE
T ss_pred eEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecccccc
Confidence 99999876532 2222356789999999876554 3346789999999876443222
Q ss_pred ---------ceeEEeecCCCceE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 721 ---------QTLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 721 ---------~~I~iwd~~~~~~~-~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
..|++||+.+++.+ ++.+|.+.|++|+|+|++.+|+|||.||+|+|||
T Consensus 255 ~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd 312 (318)
T 4ggc_A 255 LISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 312 (318)
T ss_dssp EEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEEC
T ss_pred eEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEE
Confidence 17999999887765 6789999999999999999999999999999997
No 43
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.97 E-value=1.8e-28 Score=268.07 Aligned_cols=246 Identities=13% Similarity=0.130 Sum_probs=207.6
Q ss_pred CEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCC----C---CEEEEEeCCCcE
Q 004207 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD----G---KLLATGGHDKKA 579 (768)
Q Consensus 507 ~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpd----g---~~LaSgs~Dg~I 579 (768)
.++++|+.|+.|++|....... ...+..+..+.+|...|++++|+|+ + .+|++++.|+.|
T Consensus 27 ~~l~s~~~dg~i~iw~~~~~~~-------------~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i 93 (397)
T 1sq9_A 27 SFTVSCSGDGYLKVWDNKLLDN-------------ENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDL 93 (397)
T ss_dssp SEEEEEETTSEEEEEESBCCTT-------------CCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCE
T ss_pred CeEEEEcCCCEEEEEECCCccc-------------ccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCE
Confidence 7999999999999997654321 0112345666799999999999999 9 999999999999
Q ss_pred EEEECCCCeE-----EEEeccC-----CCCEEEEEEc----CCCCE-EEEEeCCCcEEEEECCC------CCeeEE----
Q 004207 580 VLWCTESFTV-----KSTLEEH-----TQWITDVRFS----PSLSR-LATSSADRTVRVWDTEN------PDYSLR---- 634 (768)
Q Consensus 580 ~VWdl~t~~~-----~~tl~~h-----~~~V~sl~fs----pdg~~-LaTgs~DgtIrVWDl~t------~~~~~~---- 634 (768)
++||+.+++. +..+..| ...|.+++|+ |++.+ |++++.||.|++||+++ +.. +.
T Consensus 94 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~ 172 (397)
T 1sq9_A 94 LFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLT-LNWSPT 172 (397)
T ss_dssp EEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTT-TCCCCE
T ss_pred EEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccce-eeccCc
Confidence 9999998876 8888888 5899999999 99999 99999999999999987 443 33
Q ss_pred -Ee-------ecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-------CCCeeEEEEecCCCEEEE
Q 004207 635 -TF-------TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-------QSGATQMRFQPRLGRILA 699 (768)
Q Consensus 635 -~~-------~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-------~~~i~sl~fsp~~~~lla 699 (768)
.+ ..|...|.+++|+|++ +|++++.|+.|++||+++++++..+.. ...+.+++|+|++.+|++
T Consensus 173 ~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~ 250 (397)
T 1sq9_A 173 LELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAI 250 (397)
T ss_dssp EEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEE
T ss_pred ceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEE
Confidence 45 4488999999999997 777999999999999999999998886 678999999999999999
Q ss_pred EEcC---CeEEEEECCCceEeeec---------------c-----------------------eeEEeecCCCceE-Eec
Q 004207 700 AAIE---NYISILDVETQVCRLKL---------------Q-----------------------TLELWNMTENKTL-TLS 737 (768)
Q Consensus 700 gs~D---g~I~IwD~~t~~~~~~~---------------~-----------------------~I~iwd~~~~~~~-~l~ 737 (768)
++.| +.|++||+++......+ . .|++||+..++.+ .+.
T Consensus 251 ~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 330 (397)
T 1sq9_A 251 AHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLN 330 (397)
T ss_dssp EEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred EecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEe
Confidence 9999 99999999876543211 1 7999999887765 455
Q ss_pred ------cC---------------CCCeeEEEEeCCC----------CEEEEEECCCcEEEeC
Q 004207 738 ------AH---------------DKLVSSLAASTVN----------GMVASASHDKCVKIWK 768 (768)
Q Consensus 738 ------~H---------------~~~I~sla~spdg----------~~LaSgs~DG~V~IWD 768 (768)
.| ...|++++|+|++ .+|++++.||.|+|||
T Consensus 331 ~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~ 392 (397)
T 1sq9_A 331 MHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR 392 (397)
T ss_dssp CCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred cccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEE
Confidence 67 8999999999998 7999999999999996
No 44
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.97 E-value=7.1e-29 Score=266.09 Aligned_cols=251 Identities=17% Similarity=0.295 Sum_probs=203.2
Q ss_pred CccccCCC-CEEEeecC---CCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCC---CCEEE
Q 004207 499 PNQLTDMD-RFVDDGSL---DDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD---GKLLA 571 (768)
Q Consensus 499 ~~~l~~~~-~~latGS~---D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpd---g~~La 571 (768)
...+.+.+ .++++|+. |+.|++|...... .. .....+|...|++++|+|+ +.+|+
T Consensus 23 ~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~-----------------~~-~~~~~~~~~~v~~~~~~~~~~~~~~l~ 84 (357)
T 3i2n_A 23 DCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGD-----------------LK-LLREIEKAKPIKCGTFGATSLQQRYLA 84 (357)
T ss_dssp EEEECTTSSEEEEEEC--CCCEEEEEEEECSSS-----------------EE-EEEEEEESSCEEEEECTTCCTTTCCEE
T ss_pred EEEEcCCCceEEEecCccCCCcEEEEEeCCCCc-----------------cc-ceeeecccCcEEEEEEcCCCCCCceEE
Confidence 33334433 57788887 9999999654321 11 1122378899999999998 69999
Q ss_pred EEeCCCcEEEEECCCCe-EEEEeccCCCCEEEEEE------cCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCC---
Q 004207 572 TGGHDKKAVLWCTESFT-VKSTLEEHTQWITDVRF------SPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHST--- 641 (768)
Q Consensus 572 Sgs~Dg~I~VWdl~t~~-~~~tl~~h~~~V~sl~f------spdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~--- 641 (768)
+|+.||.|++||+.+++ .+..+.+|...|.+++| +|++++|++++.|++|++||++++...+..+..|.+
T Consensus 85 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 164 (357)
T 3i2n_A 85 TGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENK 164 (357)
T ss_dssp EEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCC
T ss_pred EecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCC
Confidence 99999999999999888 88899999999999955 678999999999999999999987755677766554
Q ss_pred -CeEEEE----EeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEec---CCCEEEEEEcCCeEEEEECCC
Q 004207 642 -TVMSLD----FHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQP---RLGRILAAAIENYISILDVET 713 (768)
Q Consensus 642 -~V~sla----fsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp---~~~~llags~Dg~I~IwD~~t 713 (768)
.|.+++ |++++. +|++++.|+.|++||++++++.....+...+.+++|+| ++.++++++.|+.|++||+++
T Consensus 165 ~~v~~~~~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 243 (357)
T 3i2n_A 165 RDCWTVAFGNAYNQEER-VVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRT 243 (357)
T ss_dssp CCEEEEEEECCCC-CCC-EEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEE
T ss_pred CceEEEEEEeccCCCCC-EEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcC
Confidence 899998 567765 67789999999999999999888877888999999999 899999999999999999876
Q ss_pred ceEeeec-------------------------------ceeEEeecCCC--------------------ceEEeccCCCC
Q 004207 714 QVCRLKL-------------------------------QTLELWNMTEN--------------------KTLTLSAHDKL 742 (768)
Q Consensus 714 ~~~~~~~-------------------------------~~I~iwd~~~~--------------------~~~~l~~H~~~ 742 (768)
......+ ..|++||+..+ .+..+..|...
T Consensus 244 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 323 (357)
T 3i2n_A 244 QHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQP 323 (357)
T ss_dssp EETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSC
T ss_pred CCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCC
Confidence 4321110 17889998753 23467789999
Q ss_pred eeEEEEeCCCCEEE-EEECCCcEEEeC
Q 004207 743 VSSLAASTVNGMVA-SASHDKCVKIWK 768 (768)
Q Consensus 743 I~sla~spdg~~La-Sgs~DG~V~IWD 768 (768)
|++++|+|++.+|+ +++.||.|+|||
T Consensus 324 v~~~~~s~~~~~l~~s~~~d~~i~iw~ 350 (357)
T 3i2n_A 324 ISSLDWSPDKRGLCVCSSFDQTVRVLI 350 (357)
T ss_dssp EEEEEECSSSTTEEEEEETTSEEEEEE
T ss_pred eeEEEEcCCCCeEEEEecCCCcEEEEE
Confidence 99999999999888 899999999996
No 45
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.97 E-value=1.7e-28 Score=263.64 Aligned_cols=243 Identities=19% Similarity=0.294 Sum_probs=198.4
Q ss_pred CCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEE--ecCCCCCeEEEEEcCC----CCEEEEEeCCCcE
Q 004207 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQL--IPASTSKVESCHFSPD----GKLLATGGHDKKA 579 (768)
Q Consensus 506 ~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~--l~~H~~~I~sl~fSpd----g~~LaSgs~Dg~I 579 (768)
+..+++++.++.|++|..... .....+.. ...|...|++++|+|+ +.+|++|+.||.|
T Consensus 34 ~~~~~~~~~~~~v~vw~~~~~----------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i 97 (366)
T 3k26_A 34 DPLVFATVGSNRVTLYECHSQ----------------GEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGII 97 (366)
T ss_dssp SCEEEEEEETTEEEEEEECGG----------------GCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEE
T ss_pred CceEEEECCCCEEEEEEcCCC----------------cEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEE
Confidence 455666666779999965432 11122222 2348889999999998 6799999999999
Q ss_pred EEEECCCCeEEEEeccCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCCeeEEEe---ecCCCCeEEEEEeCCCCeE
Q 004207 580 VLWCTESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTF---TGHSTTVMSLDFHPSKEDL 655 (768)
Q Consensus 580 ~VWdl~t~~~~~tl~~h~~~V~sl~fsp-dg~~LaTgs~DgtIrVWDl~t~~~~~~~~---~~h~~~V~slafsp~g~~l 655 (768)
+|||+.+++.+..+.+|...|.+++|+| ++.+|++++.||+|++||+++++. +..+ .+|...|.+++|+|++. +
T Consensus 98 ~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~-~ 175 (366)
T 3k26_A 98 RIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTL-VAIFGGVEGHRDEVLSADYDLLGE-K 175 (366)
T ss_dssp EEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEE-EEEECSTTSCSSCEEEEEECTTSS-E
T ss_pred EEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeE-EEEecccccccCceeEEEECCCCC-E
Confidence 9999999999999999999999999999 899999999999999999998764 5565 68999999999999977 5
Q ss_pred EEEEeCCCcEEEEECCCCeeEEEEe-----------------------------cCCCeeEEEEecCCCEEEEEEcCCeE
Q 004207 656 LCSCDNNSEIRYWSINNGSCAGVFK-----------------------------CQSGATQMRFQPRLGRILAAAIENYI 706 (768)
Q Consensus 656 LaSgs~Dg~I~iWDl~sg~~i~~~~-----------------------------~~~~i~sl~fsp~~~~llags~Dg~I 706 (768)
|++++.|+.|++||+++++.+..+. +...|.+++|+ +.++++++.|+.|
T Consensus 176 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i 253 (366)
T 3k26_A 176 IMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAI 253 (366)
T ss_dssp EEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEE
T ss_pred EEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEE
Confidence 6688899999999999876543332 45679999999 5799999999999
Q ss_pred EEEECCCceE--------------ee---------------------------ecceeEEeecCCCce-----EEeccC-
Q 004207 707 SILDVETQVC--------------RL---------------------------KLQTLELWNMTENKT-----LTLSAH- 739 (768)
Q Consensus 707 ~IwD~~t~~~--------------~~---------------------------~~~~I~iwd~~~~~~-----~~l~~H- 739 (768)
++||+.+... .. ....|++||+..+.. ..+..|
T Consensus 254 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 333 (366)
T 3k26_A 254 VCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHK 333 (366)
T ss_dssp EEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTT
T ss_pred EEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccc
Confidence 9999876422 10 012799999988643 256667
Q ss_pred -CCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 740 -DKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 740 -~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
...|++++|+|++.+|++++.||.|+|||
T Consensus 334 ~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd 363 (366)
T 3k26_A 334 CGAAIRQTSFSRDSSILIAVCDDASIWRWD 363 (366)
T ss_dssp CCSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred cCCceEEEEeCCCCCeEEEEeCCCEEEEEE
Confidence 78999999999999999999999999997
No 46
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.97 E-value=4.5e-29 Score=274.78 Aligned_cols=242 Identities=19% Similarity=0.345 Sum_probs=198.1
Q ss_pred cCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCC
Q 004207 498 APNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDK 577 (768)
Q Consensus 498 ~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg 577 (768)
....+.+.+.+|++|+.|++|++|+.... .....+..|...|.+++|+|++++|++|+.|+
T Consensus 70 ~~~~~sp~~~~l~s~s~D~~v~iWd~~~~-------------------~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~ 130 (380)
T 3iz6_a 70 YSLDWTPEKNWIVSASQDGRLIVWNALTS-------------------QKTHAIKLHCPWVMECAFAPNGQSVACGGLDS 130 (380)
T ss_dssp EEEEECTTSSCEEEEETTSEEEEEETTTT-------------------EEEEEEECCCTTCCCCEECTTSSEEEECCSSS
T ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCC-------------------ccceEEecCCCCEEEEEECCCCCEEEEeeCCC
Confidence 33344556789999999999999965322 34566789999999999999999999999999
Q ss_pred cEEEEECCCCe-------EEEEeccCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCeeEEEe-----ecCCCCeE
Q 004207 578 KAVLWCTESFT-------VKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTF-----TGHSTTVM 644 (768)
Q Consensus 578 ~I~VWdl~t~~-------~~~tl~~h~~~V~sl~fspd-g~~LaTgs~DgtIrVWDl~t~~~~~~~~-----~~h~~~V~ 644 (768)
.|+|||+.+.. ....+.+|.+.|.++.|+|+ +..|++|+.|++|++||++++.. +..+ .+|...|.
T Consensus 131 ~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~-~~~~~~~~~~~h~~~v~ 209 (380)
T 3iz6_a 131 ACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQR-ISIFGSEFPSGHTADVL 209 (380)
T ss_dssp CCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCE-EEEECCCSSSSCCSCEE
T ss_pred cEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcE-EEEeecccCCCCccCeE
Confidence 99999986532 34567899999999999996 56799999999999999998775 4444 67899999
Q ss_pred EEEEeCCCCeEEEEEeCCCcEEEEECC-CCeeEEEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecce
Q 004207 645 SLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQT 722 (768)
Q Consensus 645 slafsp~g~~lLaSgs~Dg~I~iWDl~-sg~~i~~~~~-~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~ 722 (768)
+++|++....+|++|+.|+.|++||++ .+.++..+.. ...|.+++|+|++.+|++++.|++|++||++++.....
T Consensus 210 ~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~--- 286 (380)
T 3iz6_a 210 SLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQV--- 286 (380)
T ss_dssp EEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEE---
T ss_pred EEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEE---
Confidence 999998656688899999999999998 4567777764 56799999999999999999999999999998766432
Q ss_pred eEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 723 LELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 723 I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
+..... ....+...|++++|+|++.+|++|+.||.|+|||
T Consensus 287 ---~~~~~~---~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd 326 (380)
T 3iz6_a 287 ---YNREPD---RNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWD 326 (380)
T ss_dssp ---ECCCCS---SSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEE
T ss_pred ---eccccc---ccccccCceEEEEECCCCCEEEEEECCCCEEEEE
Confidence 221111 0112345689999999999999999999999997
No 47
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.97 E-value=8.1e-28 Score=263.39 Aligned_cols=254 Identities=12% Similarity=0.231 Sum_probs=206.2
Q ss_pred CccccCCCC-EEEeecCCCcEEEeec----CCCCCCCCccccccccCCCceeeEEEE----------ecCCCCCeEEEEE
Q 004207 499 PNQLTDMDR-FVDDGSLDDNVESFLS----PDDADPRDRVGRSAEVGKGFTFTEFQL----------IPASTSKVESCHF 563 (768)
Q Consensus 499 ~~~l~~~~~-~latGS~D~~v~~w~~----~~~~d~~~~~~~~~~~~~~~~~~~~~~----------l~~H~~~I~sl~f 563 (768)
...+.+.+. ++++|+.|+.|++|.. ...... ..+..... ..+|.+.|++++|
T Consensus 50 ~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 116 (425)
T 1r5m_A 50 SSTWNPLDESILAYGEKNSVARLARIVETDQEGKKY-------------WKLTIIAELRHPFALSASSGKTTNQVTCLAW 116 (425)
T ss_dssp EEEECSSCTTEEEEEETBTEEEEEEEEEC------C-------------EEEEEEEEEECCCCCC------CBCEEEEEE
T ss_pred EEEECCCCCcEEEEecCCceEEEEEEecccCCcccc-------------ccccccccccccccccccccCCCCceEEEEE
Confidence 344455566 9999999999999976 322100 00111111 2237889999999
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCee-----------
Q 004207 564 SPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS----------- 632 (768)
Q Consensus 564 Spdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~----------- 632 (768)
+|++++|++++.||.|+||| .+++.+..+..|...|.+++|+|++++|++++.|+.|++||++++...
T Consensus 117 s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 195 (425)
T 1r5m_A 117 SHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGS 195 (425)
T ss_dssp CTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC-----
T ss_pred cCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCcc
Confidence 99999999999999999999 677888899999999999999999999999999999999999765421
Q ss_pred --------------------------------------------EEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEE
Q 004207 633 --------------------------------------------LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW 668 (768)
Q Consensus 633 --------------------------------------------~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iW 668 (768)
+..+..|...|.+++|+|++. +|++++.|+.|++|
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~i~ 274 (425)
T 1r5m_A 196 SINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNK-LLLSASDDGTLRIW 274 (425)
T ss_dssp ----------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTT-EEEEEETTSCEEEE
T ss_pred ceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCC-EEEEEcCCCEEEEE
Confidence 123446888999999999987 66688899999999
Q ss_pred ECCCCeeEEEEe-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecc-------------------------e
Q 004207 669 SINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ-------------------------T 722 (768)
Q Consensus 669 Dl~sg~~i~~~~-~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~-------------------------~ 722 (768)
|+++++++..+. +...+.+++|+|++ .+++++.|+.|++||+++......+. .
T Consensus 275 d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~ 353 (425)
T 1r5m_A 275 HGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQ 353 (425)
T ss_dssp CSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSC
T ss_pred ECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCe
Confidence 999998888886 46779999999998 99999999999999998876554332 7
Q ss_pred eEEeecCCCc---------------------eEEeccCCC--CeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 723 LELWNMTENK---------------------TLTLSAHDK--LVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 723 I~iwd~~~~~---------------------~~~l~~H~~--~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
|++||+..+. ...+..|.. .|++++|+|++.+|++++.||.|+|||
T Consensus 354 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~ 422 (425)
T 1r5m_A 354 VNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVA 422 (425)
T ss_dssp EEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEE
T ss_pred EEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEe
Confidence 9999998776 346778866 999999999999999999999999996
No 48
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.96 E-value=4.1e-28 Score=268.35 Aligned_cols=213 Identities=30% Similarity=0.529 Sum_probs=185.0
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCC------------------CEEEEEEcCCCCEEEE
Q 004207 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ------------------WITDVRFSPSLSRLAT 614 (768)
Q Consensus 553 ~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~------------------~V~sl~fspdg~~LaT 614 (768)
+|.+.|.|++|+|||++||+|+ |+.++||++.+++.+..+..|.. .|.+++|+|++++|++
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s 140 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 140 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence 6999999999999999999986 68999999999998888765532 4999999999999999
Q ss_pred EeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEec-C
Q 004207 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQP-R 693 (768)
Q Consensus 615 gs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp-~ 693 (768)
|+.|++|+|||+++++. +..+.+|...|.+++|+|++. +|++|+.|++|++||++++++...+.....+.+++|+| +
T Consensus 141 ~~~d~~i~iwd~~~~~~-~~~~~~h~~~v~~~~~~p~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~ 218 (393)
T 1erj_A 141 GAEDRLIRIWDIENRKI-VMILQGHEQDIYSLDYFPSGD-KLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGD 218 (393)
T ss_dssp EETTSCEEEEETTTTEE-EEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTT
T ss_pred EcCCCeEEEEECCCCcE-EEEEccCCCCEEEEEEcCCCC-EEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCC
Confidence 99999999999998664 778899999999999999987 56699999999999999999999998888999999999 8
Q ss_pred CCEEEEEEcCCeEEEEECCCceEeeec--------------------------------ceeEEeecCCCc---------
Q 004207 694 LGRILAAAIENYISILDVETQVCRLKL--------------------------------QTLELWNMTENK--------- 732 (768)
Q Consensus 694 ~~~llags~Dg~I~IwD~~t~~~~~~~--------------------------------~~I~iwd~~~~~--------- 732 (768)
+.++++++.|+.|++||++++.....+ ..|++||+....
T Consensus 219 ~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~ 298 (393)
T 1erj_A 219 GKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPN 298 (393)
T ss_dssp CCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-------------
T ss_pred CCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCC
Confidence 889999999999999999876443221 179999986532
Q ss_pred ----eEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 733 ----TLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 733 ----~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
...+.+|...|.+++|++++.+|++|+.||.|+|||
T Consensus 299 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd 338 (393)
T 1erj_A 299 SGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWD 338 (393)
T ss_dssp --CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEE
T ss_pred CCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 235678999999999999999999999999999997
No 49
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.96 E-value=5e-28 Score=256.92 Aligned_cols=216 Identities=17% Similarity=0.303 Sum_probs=190.2
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE---EEEec--cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004207 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV---KSTLE--EHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (768)
Q Consensus 551 l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~---~~tl~--~h~~~V~sl~fspdg~~LaTgs~DgtIrVWD 625 (768)
..+|...|++++|+|++++|++++ ||.|+|||+.+++. +..+. .|...|.+++|+|++++|++++.|+.|++||
T Consensus 47 ~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d 125 (337)
T 1gxr_A 47 TLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWD 125 (337)
T ss_dssp EECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEE
T ss_pred eccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEE
Confidence 348999999999999999999998 99999999987643 23333 7899999999999999999999999999999
Q ss_pred CCCCCe-eEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEEcC
Q 004207 626 TENPDY-SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIE 703 (768)
Q Consensus 626 l~t~~~-~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags~D 703 (768)
+++++. ....+..|...|.+++|+|++. ++++++.|+.|++||+++++.+..+.. ...+.+++|+|++.++++++.|
T Consensus 126 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 204 (337)
T 1gxr_A 126 LAAPTPRIKAELTSSAPACYALAISPDSK-VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLD 204 (337)
T ss_dssp CCCC--EEEEEEECSSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred CCCCCcceeeecccCCCceEEEEECCCCC-EEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecC
Confidence 998763 3567788999999999999876 566888999999999999999888874 6679999999999999999999
Q ss_pred CeEEEEECCCceEeeecc------------------------eeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEE
Q 004207 704 NYISILDVETQVCRLKLQ------------------------TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS 759 (768)
Q Consensus 704 g~I~IwD~~t~~~~~~~~------------------------~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs 759 (768)
+.|++||+++......+. .+++||+..++...+..|...|.+++|+|++.+|++++
T Consensus 205 g~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 284 (337)
T 1gxr_A 205 NTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTG 284 (337)
T ss_dssp SEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred CcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcCCccceeEEEECCCCCEEEEec
Confidence 999999998876544322 78999999999888999999999999999999999999
Q ss_pred CCCcEEEeC
Q 004207 760 HDKCVKIWK 768 (768)
Q Consensus 760 ~DG~V~IWD 768 (768)
.||.|++||
T Consensus 285 ~dg~i~~~~ 293 (337)
T 1gxr_A 285 KDNLLNAWR 293 (337)
T ss_dssp TTSEEEEEE
T ss_pred CCCcEEEEE
Confidence 999999996
No 50
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=99.96 E-value=1.7e-27 Score=274.08 Aligned_cols=268 Identities=26% Similarity=0.422 Sum_probs=219.3
Q ss_pred cCCCCCceEEEEecCCC-------CcccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEE
Q 004207 476 HNGASSKSLLMFGSDGM-------GSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEF 548 (768)
Q Consensus 476 ~s~s~~~~~l~~~~~~~-------~~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~ 548 (768)
..++.+..+.+|...+. +...+....+.+.+..+++++.|+.|++|.... ..+
T Consensus 237 ~~~~~d~~i~~w~~~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~--------------------~~~ 296 (577)
T 2ymu_A 237 ASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNG--------------------QLL 296 (577)
T ss_dssp EEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS--------------------CEE
T ss_pred EEEeCCCEEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCC--------------------cEE
Confidence 33445566666665432 223334556677888999999999999995311 134
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004207 549 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 628 (768)
Q Consensus 549 ~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t 628 (768)
..+.+|...|.+++|+|++.+|++++.|+.|++||+.. ..+..+.+|...|.+++|+|++++|++++.|++|++||..
T Consensus 297 ~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~- 374 (577)
T 2ymu_A 297 QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN- 374 (577)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-
T ss_pred EEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC-CeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCC-
Confidence 56789999999999999999999999999999999865 5566788999999999999999999999999999999965
Q ss_pred CCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEEcCCeEE
Q 004207 629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYIS 707 (768)
Q Consensus 629 ~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags~Dg~I~ 707 (768)
++ .+..+.+|...|.+++|+|++. +|++++.|+.|++||.. ++.+..+.. ...|.+++|+|++.+|++++.|+.|+
T Consensus 375 ~~-~~~~~~~~~~~v~~~~~s~dg~-~l~~~~~d~~v~~~~~~-~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~ 451 (577)
T 2ymu_A 375 GQ-LLQTLTGHSSSVRGVAFSPDGQ-TIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVK 451 (577)
T ss_dssp CC-EEEEEECCSSCEEEEEECTTSS-CEEEEETTSEEEEECTT-CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred CC-EEEEecCCCCCeEEEEECCCCC-EEEEEeCCCEEEEEeCC-CCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEE
Confidence 33 4778889999999999999987 55688899999999964 666666654 56799999999999999999999999
Q ss_pred EEECCCceEeee------------------------cceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCc
Q 004207 708 ILDVETQVCRLK------------------------LQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKC 763 (768)
Q Consensus 708 IwD~~t~~~~~~------------------------~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~ 763 (768)
+||......... ...|++||........+.+|...|++|+|+|++++|++++.||.
T Consensus 452 ~w~~~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~ 531 (577)
T 2ymu_A 452 LWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT 531 (577)
T ss_dssp EEETTSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSE
T ss_pred EEECCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCE
Confidence 999754322110 01799999876666788899999999999999999999999999
Q ss_pred EEEeC
Q 004207 764 VKIWK 768 (768)
Q Consensus 764 V~IWD 768 (768)
|+|||
T Consensus 532 v~lwd 536 (577)
T 2ymu_A 532 VKLWN 536 (577)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 99997
No 51
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.96 E-value=2.5e-29 Score=273.61 Aligned_cols=241 Identities=15% Similarity=0.170 Sum_probs=190.5
Q ss_pred ccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC
Q 004207 497 SAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD 576 (768)
Q Consensus 497 ~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~D 576 (768)
+....+.+.+.+|++|+.|+.|++|..... .+..+..+.+|...|++++|+|++++|++++.|
T Consensus 14 v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~-----------------~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d 76 (377)
T 3dwl_C 14 SYEHAFNSQRTEFVTTTATNQVELYEQDGN-----------------GWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQD 76 (377)
T ss_dssp CSCCEECSSSSEEECCCSSSCBCEEEEETT-----------------EEEECCCBCCCSSCEEEEEECTTTCCEEEEETT
T ss_pred EEEEEECCCCCEEEEecCCCEEEEEEccCC-----------------ceEEEEEEecCCceEEEEEEeCCCCEEEEEeCC
Confidence 445556667889999999999999965321 123456677999999999999999999999999
Q ss_pred CcEEEEECCCCe---EEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCe--eEEEeec-CCCCeEEEEEeC
Q 004207 577 KKAVLWCTESFT---VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY--SLRTFTG-HSTTVMSLDFHP 650 (768)
Q Consensus 577 g~I~VWdl~t~~---~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~--~~~~~~~-h~~~V~slafsp 650 (768)
++|+|||+.+++ ....+..|...|++++|+|++++|++++.|++|++||++++.. ....+.. |...|.+++|+|
T Consensus 77 ~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 156 (377)
T 3dwl_C 77 RNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHP 156 (377)
T ss_dssp SSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECT
T ss_pred CeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcC
Confidence 999999999877 6777888999999999999999999999999999999988653 3566666 999999999999
Q ss_pred CCCeEEEEEeCCCcEEEEECC------------------CCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECC
Q 004207 651 SKEDLLCSCDNNSEIRYWSIN------------------NGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVE 712 (768)
Q Consensus 651 ~g~~lLaSgs~Dg~I~iWDl~------------------sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~ 712 (768)
++. +|++++.|+.|++||++ .++++..+.+...|.+++|+|++.+|++++.|+.|++||+.
T Consensus 157 ~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~ 235 (377)
T 3dwl_C 157 NNV-LLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPS 235 (377)
T ss_dssp TSS-EEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTTEEC-CEEC
T ss_pred CCC-EEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence 976 67789999999999985 34455555556779999999999999999999999999998
Q ss_pred CceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 004207 713 TQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 767 (768)
Q Consensus 713 t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IW 767 (768)
+...... ....+..|...|.+++|+|++.+|++++.|+.+.+|
T Consensus 236 ~~~~~~~------------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~ 278 (377)
T 3dwl_C 236 APEQPPR------------ALITVKLSQLPLRSLLWANESAIVAAGYNYSPILLQ 278 (377)
T ss_dssp STTSCEE------------ECCCEECSSSCEEEEEEEETTEEEEEESSSSEEEEC
T ss_pred CCCCcce------------eeEeecCCCCceEEEEEcCCCCEEEEEcCCcEEEEE
Confidence 7654110 012455899999999999999999999877776443
No 52
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.5e-29 Score=289.97 Aligned_cols=234 Identities=11% Similarity=0.115 Sum_probs=184.2
Q ss_pred cCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCC------CCEEEEEeCC
Q 004207 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD------GKLLATGGHD 576 (768)
Q Consensus 503 ~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpd------g~~LaSgs~D 576 (768)
.+...++++++.|++|++|...... ........+..|.+.|.+|+|+|+ +.+||+++.|
T Consensus 170 ~~~~~~laS~s~D~tI~iWd~~~~~---------------~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~D 234 (524)
T 2j04_B 170 NEHLEMFDKEKHSSCIQIFKMNTST---------------LHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQE 234 (524)
T ss_dssp ------------CEEEEEEEEETTT---------------CCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETT
T ss_pred chhhhhhccCCCCceEEEEEccCCC---------------CCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecC
Confidence 3455678999999999999653221 111223446678899999999996 5799999999
Q ss_pred CcEEEEECCCCeE-----------EEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEE
Q 004207 577 KKAVLWCTESFTV-----------KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS 645 (768)
Q Consensus 577 g~I~VWdl~t~~~-----------~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~s 645 (768)
|+|+|||+.+++. ..++.+|...|++++|+++ ..|++|+.||+|++||++++......+.+|...|.+
T Consensus 235 gtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~s 313 (524)
T 2j04_B 235 GTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILS 313 (524)
T ss_dssp SCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEE
T ss_pred CeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEE
Confidence 9999999986532 2467889999999999986 489999999999999999876556778899999999
Q ss_pred E--EEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecC---CCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeec
Q 004207 646 L--DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ---SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL 720 (768)
Q Consensus 646 l--afsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~---~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~ 720 (768)
| +|++++..+|++|+.|++|+|||+++++++..+..+ ..|.+++|+|++..+++++.|++|++||+++..+.
T Consensus 314 v~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~--- 390 (524)
T 2j04_B 314 VSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAV--- 390 (524)
T ss_dssp EEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCC---
T ss_pred EEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccc---
Confidence 9 467776468899999999999999998877666543 24789999999999999999999999998875442
Q ss_pred ceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 721 QTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 721 ~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
.++.+|.+.|++|+|+|++.+|++|+.||+|+|||
T Consensus 391 -------------~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd 425 (524)
T 2j04_B 391 -------------HPLVSRETTITAIGVSRLHPMVLAGSADGSLIITN 425 (524)
T ss_dssp -------------EEEEECSSCEEEEECCSSCCBCEEEETTTEEECCB
T ss_pred -------------eeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEe
Confidence 23457999999999999999999999999999996
No 53
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.96 E-value=2.7e-28 Score=259.13 Aligned_cols=208 Identities=20% Similarity=0.292 Sum_probs=174.3
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC--CeEEEEeccCCCCEEEEEEcCC--CCEEEEEeCCCcEEEE
Q 004207 549 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES--FTVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVW 624 (768)
Q Consensus 549 ~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t--~~~~~tl~~h~~~V~sl~fspd--g~~LaTgs~DgtIrVW 624 (768)
..+.+|.+.|++++|+|+|++||+|+.|++|+|||+.+ .+++.++.+|.+.|++|+|+++ +++|++|+.|++|+||
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW 82 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence 45679999999999999999999999999999999974 4677899999999999999864 8999999999999999
Q ss_pred ECCCCC-eeEEEeecCCCCeEEEEEeCCC-CeEEEEEeCCCcEEEEECCCCee--EEEEe-cCCCeeEEEEecC------
Q 004207 625 DTENPD-YSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSC--AGVFK-CQSGATQMRFQPR------ 693 (768)
Q Consensus 625 Dl~t~~-~~~~~~~~h~~~V~slafsp~g-~~lLaSgs~Dg~I~iWDl~sg~~--i~~~~-~~~~i~sl~fsp~------ 693 (768)
|++++. ..+..+.+|...|.+++|+|+. ..+|++++.|+.|++||++++.. ...+. +...|.+++|+|+
T Consensus 83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~ 162 (297)
T 2pm7_B 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 162 (297)
T ss_dssp EBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-----
T ss_pred EcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccc
Confidence 998764 2356778899999999999972 34777999999999999987632 23333 4567999999997
Q ss_pred -------CCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCC---CEEEEEECCCc
Q 004207 694 -------LGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVN---GMVASASHDKC 763 (768)
Q Consensus 694 -------~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg---~~LaSgs~DG~ 763 (768)
+.+|++++.|+.|++||+++...... ....+.+|...|.+|+|+|++ .+|++++.|++
T Consensus 163 ~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~------------~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~ 230 (297)
T 2pm7_B 163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYV------------LESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRT 230 (297)
T ss_dssp -------CCEEEEEETTSCEEEEEEETTTTEEE------------EEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSC
T ss_pred cCCCCCCcceEEEEcCCCcEEEEEEcCCCceEE------------EEEEecCCCCceEEEEECCCCCCceEEEEEECCCc
Confidence 46899999999999999876431110 022466899999999999985 79999999999
Q ss_pred EEEeC
Q 004207 764 VKIWK 768 (768)
Q Consensus 764 V~IWD 768 (768)
|+|||
T Consensus 231 v~iWd 235 (297)
T 2pm7_B 231 CIIWT 235 (297)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99996
No 54
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.96 E-value=7.8e-28 Score=260.66 Aligned_cols=205 Identities=22% Similarity=0.382 Sum_probs=176.5
Q ss_pred eeeEEEEecCCCCCeEEEEE-----cC-CCCEEEEEeCCCcEEEEECCC-------CeEEEEeccCCCCEEEEEEcCCCC
Q 004207 544 TFTEFQLIPASTSKVESCHF-----SP-DGKLLATGGHDKKAVLWCTES-------FTVKSTLEEHTQWITDVRFSPSLS 610 (768)
Q Consensus 544 ~~~~~~~l~~H~~~I~sl~f-----Sp-dg~~LaSgs~Dg~I~VWdl~t-------~~~~~tl~~h~~~V~sl~fspdg~ 610 (768)
.+.....+.+|.+.|++++| ++ ++.+|++|+.|++|+|||+.+ +.+...+.+|...|.+++|+|++.
T Consensus 10 ~~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~ 89 (343)
T 2xzm_R 10 QVVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENC 89 (343)
T ss_dssp EEEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTT
T ss_pred EeeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCC
Confidence 34567788999999999999 77 999999999999999999874 345678899999999999999999
Q ss_pred EEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEe----cCCCee
Q 004207 611 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK----CQSGAT 686 (768)
Q Consensus 611 ~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~----~~~~i~ 686 (768)
+|++|+.|++|+|||+++++. +..+.+|...|.+++|+|++. +|++++.|++|++||+... +..... +...+.
T Consensus 90 ~l~s~s~D~~v~lwd~~~~~~-~~~~~~h~~~v~~v~~sp~~~-~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~v~ 166 (343)
T 2xzm_R 90 FAISSSWDKTLRLWDLRTGTT-YKRFVGHQSEVYSVAFSPDNR-QILSAGAEREIKLWNILGE-CKFSSAEKENHSDWVS 166 (343)
T ss_dssp EEEEEETTSEEEEEETTSSCE-EEEEECCCSCEEEEEECSSTT-EEEEEETTSCEEEEESSSC-EEEECCTTTSCSSCEE
T ss_pred EEEEEcCCCcEEEEECCCCcE-EEEEcCCCCcEEEEEECCCCC-EEEEEcCCCEEEEEeccCC-ceeeeecccCCCceee
Confidence 999999999999999998775 788899999999999999987 5668999999999999843 333332 345699
Q ss_pred EEEEecCC----------CEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEE
Q 004207 687 QMRFQPRL----------GRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVA 756 (768)
Q Consensus 687 sl~fsp~~----------~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~La 756 (768)
+++|+|++ .++++++.|+.|++||... .. ...+.+|...|++++|+|++.+|+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~----------------~~~~~~h~~~v~~~~~s~~g~~l~ 229 (343)
T 2xzm_R 167 CVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF-QI----------------RYTFKAHESNVNHLSISPNGKYIA 229 (343)
T ss_dssp EEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT-EE----------------EEEEECCSSCEEEEEECTTSSEEE
T ss_pred eeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC-ce----------------eEEEcCccccceEEEECCCCCEEE
Confidence 99999986 6899999999999999432 21 224558999999999999999999
Q ss_pred EEECCCcEEEeC
Q 004207 757 SASHDKCVKIWK 768 (768)
Q Consensus 757 Sgs~DG~V~IWD 768 (768)
+|+.||.|+|||
T Consensus 230 sgs~dg~v~iwd 241 (343)
T 2xzm_R 230 TGGKDKKLLIWD 241 (343)
T ss_dssp EEETTCEEEEEE
T ss_pred EEcCCCeEEEEE
Confidence 999999999997
No 55
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.96 E-value=5e-27 Score=263.37 Aligned_cols=239 Identities=17% Similarity=0.306 Sum_probs=207.9
Q ss_pred CCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004207 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (768)
Q Consensus 506 ~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~ 585 (768)
+.++++|+.|++|++|+.... ..+..+.+|.+.|++++|++++ +|++|+.||+|+|||++
T Consensus 132 ~~~l~sgs~dg~i~vwd~~~~-------------------~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~ 191 (464)
T 3v7d_B 132 DNYVITGADDKMIRVYDSINK-------------------KFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIK 191 (464)
T ss_dssp TTEEEEEETTSCEEEEETTTT-------------------EEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETT
T ss_pred CCEEEEEcCCCcEEEEECCCC-------------------cEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECC
Confidence 468999999999999965332 3466778999999999999988 99999999999999999
Q ss_pred CCeEEEEeccCCCCEEEEEEc--CCCCEEEEEeCCCcEEEEECCCCCee----------------------EEEeecCCC
Q 004207 586 SFTVKSTLEEHTQWITDVRFS--PSLSRLATSSADRTVRVWDTENPDYS----------------------LRTFTGHST 641 (768)
Q Consensus 586 t~~~~~tl~~h~~~V~sl~fs--pdg~~LaTgs~DgtIrVWDl~t~~~~----------------------~~~~~~h~~ 641 (768)
+++.+..+.+|...|.+++|+ +++.+|++|+.|++|++||++++... +..+.+|..
T Consensus 192 ~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (464)
T 3v7d_B 192 KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMA 271 (464)
T ss_dssp TTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSS
T ss_pred CCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccc
Confidence 999999999999999999998 57789999999999999999876432 557788999
Q ss_pred CeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeec
Q 004207 642 TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL 720 (768)
Q Consensus 642 ~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~ 720 (768)
.|.++..+ +. ++++++.|+.|++||+++++++..+.. ...|.+++|+|++.++++++.|+.|++||++++.+...+
T Consensus 272 ~v~~~~~~--~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~ 348 (464)
T 3v7d_B 272 SVRTVSGH--GN-IVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTL 348 (464)
T ss_dssp CEEEEEEE--TT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred eEEEEcCC--CC-EEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEE
Confidence 99888544 44 677999999999999999999988874 567999999999999999999999999999988766554
Q ss_pred c-----------------------eeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 721 Q-----------------------TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 721 ~-----------------------~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
. .|++||+.+........|...+..++|++++.+|++++ ||.|+|||
T Consensus 349 ~~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd 418 (464)
T 3v7d_B 349 QGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYN 418 (464)
T ss_dssp CCCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-TTEEEEEE
T ss_pred eCCCCcEEEEEEcCCEEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-CCeEEEEE
Confidence 3 89999998877666556778888999999999999988 89999996
No 56
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.96 E-value=2.6e-28 Score=269.28 Aligned_cols=233 Identities=16% Similarity=0.220 Sum_probs=194.7
Q ss_pred CccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCc
Q 004207 499 PNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKK 578 (768)
Q Consensus 499 ~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~ 578 (768)
...+.+.+.++++|+.|+.|++|....... ...+..| ..+.+..|++++++|++|+.||.
T Consensus 61 ~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~-------------------~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~ 120 (420)
T 3vl1_A 61 GNTFEKVGSHLYKARLDGHDFLFNTIIRDG-------------------SKMLKRA-DYTAVDTAKLQMRRFILGTTEGD 120 (420)
T ss_dssp TCEEEEEETTEEEEEETTEEEEEECCSEET-------------------TTTSCSC-CEEEEEEECSSSCEEEEEETTSC
T ss_pred ceeeeecCCeEEEEEcCCcEEEEEecccce-------------------eeEEecC-CceEEEEEecCCCEEEEEECCCC
Confidence 455667788899999999999996543211 0112233 33555678999999999999999
Q ss_pred EEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEE
Q 004207 579 AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS 658 (768)
Q Consensus 579 I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaS 658 (768)
|+|||+.+++....+.+|...|++++|+|++++|++++.|++|++||+++++. +..+.+|...|.+++|+|++. +|++
T Consensus 121 i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~-~~~~~~h~~~v~~~~~~~~~~-~l~s 198 (420)
T 3vl1_A 121 IKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSN-PRTLIGHRATVTDIAIIDRGR-NVLS 198 (420)
T ss_dssp EEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCC-CEEEECCSSCEEEEEEETTTT-EEEE
T ss_pred EEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcC-ceEEcCCCCcEEEEEEcCCCC-EEEE
Confidence 99999999999988889999999999999999999999999999999998775 678889999999999999977 5669
Q ss_pred EeCCCcEEEEECCCCeeEEEEec----C---------------------CCeeEEEEecCCCEEEEEEcCCeEEEEECCC
Q 004207 659 CDNNSEIRYWSINNGSCAGVFKC----Q---------------------SGATQMRFQPRLGRILAAAIENYISILDVET 713 (768)
Q Consensus 659 gs~Dg~I~iWDl~sg~~i~~~~~----~---------------------~~i~sl~fsp~~~~llags~Dg~I~IwD~~t 713 (768)
++.|+.|++||+++++++..+.. . ..+.+++|+|++.++++++.|+.|++||+++
T Consensus 199 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~ 278 (420)
T 3vl1_A 199 ASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFS 278 (420)
T ss_dssp EETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTT
T ss_pred EcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCC
Confidence 99999999999999999988864 2 2334455578888999999999999999988
Q ss_pred ceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCC-EEEEEECCCcEEEeC
Q 004207 714 QVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVASASHDKCVKIWK 768 (768)
Q Consensus 714 ~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~-~LaSgs~DG~V~IWD 768 (768)
...... ....|...|++++|+|++. +|++|+.||.|+|||
T Consensus 279 ~~~~~~---------------~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd 319 (420)
T 3vl1_A 279 KEQTIQ---------------LPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWD 319 (420)
T ss_dssp CCEEEE---------------ECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEE
T ss_pred CceeEE---------------cccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEE
Confidence 654322 1236888999999999998 999999999999997
No 57
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.5e-28 Score=268.23 Aligned_cols=239 Identities=12% Similarity=0.248 Sum_probs=201.5
Q ss_pred cCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCC-CCEEEEEeCC
Q 004207 498 APNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD-GKLLATGGHD 576 (768)
Q Consensus 498 ~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpd-g~~LaSgs~D 576 (768)
....+.+.+.+|++|+.|+.|++|....... ....+..+.+|...|++++|+|+ +.+|++++.|
T Consensus 71 ~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~---------------~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d 135 (416)
T 2pm9_A 71 NDLDWSHNNKIIAGALDNGSLELYSTNEANN---------------AINSMARFSNHSSSVKTVKFNAKQDNVLASGGNN 135 (416)
T ss_dssp EEEEECSSSSCEEEEESSSCEEEECCSSTTS---------------CCCEEEECCCSSSCCCEEEECSSSTTBEEEECSS
T ss_pred EEEEECCCCCeEEEEccCCeEEEeecccccc---------------cccchhhccCCccceEEEEEcCCCCCEEEEEcCC
Confidence 3455567788999999999999996543211 11256677899999999999998 8999999999
Q ss_pred CcEEEEECCCCe------EEE---EeccCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCeeEEEeecC------C
Q 004207 577 KKAVLWCTESFT------VKS---TLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFTGH------S 640 (768)
Q Consensus 577 g~I~VWdl~t~~------~~~---tl~~h~~~V~sl~fspd-g~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h------~ 640 (768)
+.|+|||+.+++ ... .+..|...|.+++|+|+ +.+|++++.|+.|++||+++++. +..+..| .
T Consensus 136 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~ 214 (416)
T 2pm9_A 136 GEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKE-VIHLSYTSPNSGIK 214 (416)
T ss_dssp SCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEE-EEEECCCCCSSCCC
T ss_pred CeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCc-ceEEeccccccccC
Confidence 999999999876 332 23678999999999998 78999999999999999998765 5666555 7
Q ss_pred CCeEEEEEeCCCCeEEEEEeCCC---cEEEEECCCC-eeEEEEe--cCCCeeEEEEec-CCCEEEEEEcCCeEEEEECCC
Q 004207 641 TTVMSLDFHPSKEDLLCSCDNNS---EIRYWSINNG-SCAGVFK--CQSGATQMRFQP-RLGRILAAAIENYISILDVET 713 (768)
Q Consensus 641 ~~V~slafsp~g~~lLaSgs~Dg---~I~iWDl~sg-~~i~~~~--~~~~i~sl~fsp-~~~~llags~Dg~I~IwD~~t 713 (768)
..|.+++|+|++..+|++++.|+ .|++||++++ .++..+. +...|.+++|+| ++.+|++++.|+.|++||+++
T Consensus 215 ~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~ 294 (416)
T 2pm9_A 215 QQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPES 294 (416)
T ss_dssp CCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSS
T ss_pred CceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCC
Confidence 88999999999877888999998 9999999986 5666665 567899999999 889999999999999999988
Q ss_pred ceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCC-CEEEEEECCCcEEEeC
Q 004207 714 QVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVN-GMVASASHDKCVKIWK 768 (768)
Q Consensus 714 ~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg-~~LaSgs~DG~V~IWD 768 (768)
..... .+..|...|++++|+|++ .+|++++.||.|+|||
T Consensus 295 ~~~~~----------------~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~ 334 (416)
T 2pm9_A 295 AEQLS----------------QFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQT 334 (416)
T ss_dssp CCEEE----------------EEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEE
T ss_pred Cccce----------------eecCCCCceEEEEECCCCCCEEEEEecCCcEEEEE
Confidence 65432 344799999999999999 8999999999999996
No 58
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.5e-27 Score=255.73 Aligned_cols=207 Identities=23% Similarity=0.349 Sum_probs=170.0
Q ss_pred eeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC--eEEEEe-cc-CCCCEEEEEEcCCCCEEEEEeCCCc
Q 004207 545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF--TVKSTL-EE-HTQWITDVRFSPSLSRLATSSADRT 620 (768)
Q Consensus 545 ~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~--~~~~tl-~~-h~~~V~sl~fspdg~~LaTgs~Dgt 620 (768)
+..+..+.+|.++|.+++|+++ +||+|+.|++|+|||+.++ +.+..+ .+ |...|.+|+|+|++++|++|+.|++
T Consensus 4 ~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~ 81 (330)
T 2hes_X 4 INLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDST 81 (330)
T ss_dssp CEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred cccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCc
Confidence 3456788899999999999987 9999999999999999874 455566 44 9999999999999999999999999
Q ss_pred EEEEECCCC------CeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCC----CeeEEEEec-CCCeeEEE
Q 004207 621 VRVWDTENP------DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN----GSCAGVFKC-QSGATQMR 689 (768)
Q Consensus 621 IrVWDl~t~------~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~s----g~~i~~~~~-~~~i~sl~ 689 (768)
|+|||++.. ...+..+.+|...|.+++|+|++. +|++|+.|++|++||++. .+++..+.. ...|.+++
T Consensus 82 v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~-~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~ 160 (330)
T 2hes_X 82 VSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY-YLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVI 160 (330)
T ss_dssp EEEEEC-------CCCEEEEEEC----CEEEEEECTTSC-EEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEE
T ss_pred EEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCC-EEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEE
Confidence 999998642 134677889999999999999976 677999999999999953 245666654 56799999
Q ss_pred EecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCC--CCEEEEEECCCcEEEe
Q 004207 690 FQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTV--NGMVASASHDKCVKIW 767 (768)
Q Consensus 690 fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spd--g~~LaSgs~DG~V~IW 767 (768)
|+|++.+|++++.|+.|++||..+.... ....+.+|...|.+++|+|+ +.+|++|+.|++|+||
T Consensus 161 ~~p~~~~l~s~s~D~~i~iW~~~~~~~~--------------~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw 226 (330)
T 2hes_X 161 WHPSEALLASSSYDDTVRIWKDYDDDWE--------------CVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVW 226 (330)
T ss_dssp ECSSSSEEEEEETTSCEEEEEEETTEEE--------------EEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEE
T ss_pred ECCCCCEEEEEcCCCeEEEEECCCCCee--------------EEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEE
Confidence 9999999999999999999997654210 12345689999999999998 6799999999999999
Q ss_pred C
Q 004207 768 K 768 (768)
Q Consensus 768 D 768 (768)
|
T Consensus 227 ~ 227 (330)
T 2hes_X 227 K 227 (330)
T ss_dssp E
T ss_pred E
Confidence 6
No 59
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.96 E-value=1.6e-27 Score=261.72 Aligned_cols=198 Identities=17% Similarity=0.145 Sum_probs=162.1
Q ss_pred CCCCCeEEEEEcCCCCEEEEEe--CCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q 004207 553 ASTSKVESCHFSPDGKLLATGG--HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 630 (768)
Q Consensus 553 ~H~~~I~sl~fSpdg~~LaSgs--~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~ 630 (768)
.+...+.+++|||||++|++++ .|++|+|||+++++++..+. |...|++|+|+|++++|++++.| .+++|+..++.
T Consensus 131 ~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~ 208 (365)
T 4h5i_A 131 NADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGS 208 (365)
T ss_dssp CTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCC
T ss_pred CcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccce-eEEEEEeccCc
Confidence 3456789999999999977554 78999999999999998886 77889999999999999999855 56777776666
Q ss_pred eeE-EEeecCCCCeEEEEEeCCCCeEEEEEeCCC----cEEEEECCCCeeE----EEEe-cCCCeeEEEEecCCCEEEEE
Q 004207 631 YSL-RTFTGHSTTVMSLDFHPSKEDLLCSCDNNS----EIRYWSINNGSCA----GVFK-CQSGATQMRFQPRLGRILAA 700 (768)
Q Consensus 631 ~~~-~~~~~h~~~V~slafsp~g~~lLaSgs~Dg----~I~iWDl~sg~~i----~~~~-~~~~i~sl~fsp~~~~llag 700 (768)
... .....|...|.+++|+|++.. +++++.|+ .|++||+...... ..+. +...|.+++|+|++.+|++|
T Consensus 209 ~~~~~~~~~~~~~v~~v~fspdg~~-l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasg 287 (365)
T 4h5i_A 209 CIARKTDFDKNWSLSKINFIADDTV-LIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLA 287 (365)
T ss_dssp EEEEECCCCTTEEEEEEEEEETTEE-EEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEE
T ss_pred ceeeeecCCCCCCEEEEEEcCCCCE-EEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEE
Confidence 533 345678889999999999874 44666565 6888998776542 2233 35679999999999999999
Q ss_pred EcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 701 AIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 701 s~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
+.|+.|+|||+++++++..+ +.+|...|++|+|+||+.+|||||.|++|+|||
T Consensus 288 s~D~~V~iwd~~~~~~~~~~---------------~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ 340 (365)
T 4h5i_A 288 SNDNSIALVKLKDLSMSKIF---------------KQAHSFAITEVTISPDSTYVASVSAANTIHIIK 340 (365)
T ss_dssp ETTSCEEEEETTTTEEEEEE---------------TTSSSSCEEEEEECTTSCEEEEEETTSEEEEEE
T ss_pred cCCCEEEEEECCCCcEEEEe---------------cCcccCCEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 99999999999887654321 248999999999999999999999999999996
No 60
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.96 E-value=4e-28 Score=269.64 Aligned_cols=244 Identities=11% Similarity=0.226 Sum_probs=192.9
Q ss_pred CccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCC------------CCeEEEEEcCC
Q 004207 499 PNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST------------SKVESCHFSPD 566 (768)
Q Consensus 499 ~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~------------~~I~sl~fSpd 566 (768)
...+.+.+.+|++|+.|+.|++|........ .......+..+..+.+|. +.|++++|+|+
T Consensus 33 ~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~--------~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~ 104 (447)
T 3dw8_B 33 TVEFNHSGELLATGDKGGRVVIFQQEQENKI--------QSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQ 104 (447)
T ss_dssp EEEECSSSSEEEEEETTSEEEEEEECC-------------CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCC
T ss_pred EEEECCCCCEEEEEcCCCeEEEEEecCCCCC--------CcccccceeEecccccccccccccccccccCceEEEEEcCC
Confidence 3344556789999999999999976544211 011123455677788998 88999999999
Q ss_pred C--CEEEEEeCCCcEEEEECCCCeEE---------------------------------------EE-eccCCCCEEEEE
Q 004207 567 G--KLLATGGHDKKAVLWCTESFTVK---------------------------------------ST-LEEHTQWITDVR 604 (768)
Q Consensus 567 g--~~LaSgs~Dg~I~VWdl~t~~~~---------------------------------------~t-l~~h~~~V~sl~ 604 (768)
+ .+|++++.|++|+|||+.++... .. ..+|...|++++
T Consensus 105 ~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 184 (447)
T 3dw8_B 105 KNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS 184 (447)
T ss_dssp CSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred CCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence 8 79999999999999998764432 12 367999999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCCeeEE-------EeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCee--
Q 004207 605 FSPSLSRLATSSADRTVRVWDTENPDYSLR-------TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-- 675 (768)
Q Consensus 605 fspdg~~LaTgs~DgtIrVWDl~t~~~~~~-------~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~-- 675 (768)
|+|++++|++| .|++|+|||+++....+. .+.+|...|.+++|+|++..+|++|+.||.|++||+++++.
T Consensus 185 ~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~ 263 (447)
T 3dw8_B 185 INSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCD 263 (447)
T ss_dssp ECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSC
T ss_pred EcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcccc
Confidence 99999999998 899999999985444344 25689999999999999856888999999999999999886
Q ss_pred --EEEEecCC-------------CeeEEEEecCCCEEEEEEcCCeEEEEECCC-ceEeeecceeEEeecCCCceEEeccC
Q 004207 676 --AGVFKCQS-------------GATQMRFQPRLGRILAAAIENYISILDVET-QVCRLKLQTLELWNMTENKTLTLSAH 739 (768)
Q Consensus 676 --i~~~~~~~-------------~i~sl~fsp~~~~llags~Dg~I~IwD~~t-~~~~~~~~~I~iwd~~~~~~~~l~~H 739 (768)
+..+..+. .|.+++|+|++.+|++++. +.|++||+++ ...... +..|
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~----------------~~~~ 326 (447)
T 3dw8_B 264 RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVET----------------YQVH 326 (447)
T ss_dssp TTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCC----------------EESC
T ss_pred ceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccce----------------eecc
Confidence 67776643 7999999999999999888 9999999986 443222 2233
Q ss_pred CC---------------CeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 740 DK---------------LVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 740 ~~---------------~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
.. .+..++|+|++.+|++|+.||.|+|||
T Consensus 327 ~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd 370 (447)
T 3dw8_B 327 EYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFD 370 (447)
T ss_dssp GGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEE
T ss_pred ccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEE
Confidence 22 134599999999999999999999997
No 61
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3e-28 Score=280.95 Aligned_cols=252 Identities=10% Similarity=0.046 Sum_probs=189.9
Q ss_pred CCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004207 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (768)
Q Consensus 506 ~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~ 585 (768)
..+|++|+.|++|++|............. . .......+.+|...|+|++|++++ .|++|+.||+|++||+.
T Consensus 225 ~~~LAs~s~DgtvrlWd~~~~~~~~~~~~---~-----~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~ 295 (524)
T 2j04_B 225 VGCLSFVSQEGTINFLEIIDNATDVHVFK---M-----CEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLT 295 (524)
T ss_dssp SCEEEEEETTSCEEEEECCCCSSSSSEEE---C-----CCSCSEEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETT
T ss_pred CceEEEEecCCeEEEEEcCCCccccccce---e-----ecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECC
Confidence 57999999999999997754321100000 0 001234578999999999999864 89999999999999998
Q ss_pred CCe-EEEEeccCCCCEEEE--EEcCCC-CEEEEEeCCCcEEEEECCCCCeeEEEeecCCC--CeEEEEEeCCCCeEEEEE
Q 004207 586 SFT-VKSTLEEHTQWITDV--RFSPSL-SRLATSSADRTVRVWDTENPDYSLRTFTGHST--TVMSLDFHPSKEDLLCSC 659 (768)
Q Consensus 586 t~~-~~~tl~~h~~~V~sl--~fspdg-~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~--~V~slafsp~g~~lLaSg 659 (768)
++. +...+.+|...|++| +|++++ .+|+||+.|++|+|||+++++. +..+.+|.. .|.+++|+|++.. |+++
T Consensus 296 ~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~-~~~~~~~~~~~~v~~v~fsp~~~~-l~s~ 373 (524)
T 2j04_B 296 DPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIAT-TKTTVSRFRGSNLVPVVYCPQIYS-YIYS 373 (524)
T ss_dssp BCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHH-HCEEEEECSCCSCCCEEEETTTTE-EEEE
T ss_pred CCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCc-ccccccccccCcccceEeCCCcCe-EEEe
Confidence 763 456688999999999 578887 8999999999999999987664 445555543 5889999999774 6688
Q ss_pred eCCCcEEEEECCCCeeEEEEe-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEee--------------ecc---
Q 004207 660 DNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRL--------------KLQ--- 721 (768)
Q Consensus 660 s~Dg~I~iWDl~sg~~i~~~~-~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~--------------~~~--- 721 (768)
+.|++|++||++++.++..+. +...|.+|+|+|++..|++|+.|++|++||+....... .+.
T Consensus 374 ~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp 453 (524)
T 2j04_B 374 DGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSI 453 (524)
T ss_dssp CSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCS
T ss_pred CCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCC
Confidence 889999999999998877665 45679999999999999999999999999975431110 000
Q ss_pred ---eeEEee---c-----CCCceEEeccCCCCeeEEEEeCCCC---EEEEEECCCcEEEeC
Q 004207 722 ---TLELWN---M-----TENKTLTLSAHDKLVSSLAASTVNG---MVASASHDKCVKIWK 768 (768)
Q Consensus 722 ---~I~iwd---~-----~~~~~~~l~~H~~~I~sla~spdg~---~LaSgs~DG~V~IWD 768 (768)
.+++|+ + .......+.+|...|.+|+|+|++. +||+|+.||.|+||+
T Consensus 454 ~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~ 514 (524)
T 2j04_B 454 KDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEY 514 (524)
T ss_dssp SSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEE
T ss_pred CCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEE
Confidence 233433 1 1222346778999999999999964 999999999999995
No 62
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.96 E-value=3e-27 Score=283.57 Aligned_cols=235 Identities=21% Similarity=0.314 Sum_probs=207.7
Q ss_pred CccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCc
Q 004207 499 PNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKK 578 (768)
Q Consensus 499 ~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~ 578 (768)
...+++.+.++++|+.|+.|++|+...+ ..+..+.+|.+.|++++|+|++++|++++.||.
T Consensus 18 ~i~~sp~~~~la~~~~~g~v~iwd~~~~-------------------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 78 (814)
T 3mkq_A 18 GIDFHPTEPWVLTTLYSGRVEIWNYETQ-------------------VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFR 78 (814)
T ss_dssp EEEECSSSSEEEEEETTSEEEEEETTTT-------------------EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSE
T ss_pred EEEECCCCCEEEEEeCCCEEEEEECCCC-------------------ceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCe
Confidence 3344556789999999999999965332 245667799999999999999999999999999
Q ss_pred EEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEE
Q 004207 579 AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS 658 (768)
Q Consensus 579 I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaS 658 (768)
|+|||+.+++.+..+.+|...|++++|+|++.+|++++.||+|++||++++......+.+|...|.+++|+|++..+|++
T Consensus 79 i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~ 158 (814)
T 3mkq_A 79 IRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFAS 158 (814)
T ss_dssp EEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEE
T ss_pred EEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEE
Confidence 99999999999999999999999999999999999999999999999998766688889999999999999944557889
Q ss_pred EeCCCcEEEEECCCCeeEEEEecC--CCeeEEEEec--CCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceE
Q 004207 659 CDNNSEIRYWSINNGSCAGVFKCQ--SGATQMRFQP--RLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTL 734 (768)
Q Consensus 659 gs~Dg~I~iWDl~sg~~i~~~~~~--~~i~sl~fsp--~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~ 734 (768)
++.||.|++||++++.....+..+ ..+.+++|+| ++.++++++.|+.|++||+.+.....
T Consensus 159 ~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~---------------- 222 (814)
T 3mkq_A 159 GCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVA---------------- 222 (814)
T ss_dssp EETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEE----------------
T ss_pred EeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEE----------------
Confidence 999999999999988877776653 6799999999 89999999999999999998865532
Q ss_pred EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 735 TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 735 ~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
.+.+|...|++++|+|++.+|++++.||.|++||
T Consensus 223 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd 256 (814)
T 3mkq_A 223 TLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256 (814)
T ss_dssp EEECCSSCEEEEEECSSSSEEEEEETTSCEEEEE
T ss_pred EEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence 3447889999999999999999999999999996
No 63
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.96 E-value=9.7e-28 Score=262.41 Aligned_cols=215 Identities=15% Similarity=0.206 Sum_probs=173.0
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeC------CCcEEEEECCCCeEE----EEeccCCCCEEEEEEcCCCCEEEEEeCCCcE
Q 004207 552 PASTSKVESCHFSPDGKLLATGGH------DKKAVLWCTESFTVK----STLEEHTQWITDVRFSPSLSRLATSSADRTV 621 (768)
Q Consensus 552 ~~H~~~I~sl~fSpdg~~LaSgs~------Dg~I~VWdl~t~~~~----~tl~~h~~~V~sl~fspdg~~LaTgs~DgtI 621 (768)
..|...|++|+|+|||++||+|+. |+.|++|+..++... .....|...|++++|+|++. +++++.||+|
T Consensus 39 ~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v 117 (357)
T 4g56_B 39 ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAV 117 (357)
T ss_dssp -CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSCE
T ss_pred ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCEE
Confidence 479999999999999999999997 778999998776543 33456888999999999975 5678899999
Q ss_pred EEEECCCCCee---EEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCC-E
Q 004207 622 RVWDTENPDYS---LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLG-R 696 (768)
Q Consensus 622 rVWDl~t~~~~---~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~-~ 696 (768)
+|||+.+++.. .....+|...|++|+|+|++. +|++|+.|+.|++||+++++++..+.. ...|.+++|++++. .
T Consensus 118 ~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~-~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~ 196 (357)
T 4g56_B 118 ELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGT-QAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTI 196 (357)
T ss_dssp EEC--------CCCCEEECCCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSC
T ss_pred EEeeccccceeEEEeeccCCCCCCEEEEEECCCCC-EEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCce
Confidence 99999876532 234557999999999999987 566999999999999999999998875 56799999999875 6
Q ss_pred EEEEEcCCeEEEEECCCceEeeecc----------------------------eeEEeecCCCceE-EeccCCCCeeEEE
Q 004207 697 ILAAAIENYISILDVETQVCRLKLQ----------------------------TLELWNMTENKTL-TLSAHDKLVSSLA 747 (768)
Q Consensus 697 llags~Dg~I~IwD~~t~~~~~~~~----------------------------~I~iwd~~~~~~~-~l~~H~~~I~sla 747 (768)
+++++.|+.|++||+++........ .|++||+.+++.. .+.+|...|++++
T Consensus 197 ~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~ 276 (357)
T 4g56_B 197 FLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLA 276 (357)
T ss_dssp EEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEE
T ss_pred eeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEE
Confidence 8889999999999998754332211 6899999887654 6778999999999
Q ss_pred EeCCC-CEEEEEECCCcEEEeC
Q 004207 748 ASTVN-GMVASASHDKCVKIWK 768 (768)
Q Consensus 748 ~spdg-~~LaSgs~DG~V~IWD 768 (768)
|+|++ .+|++|+.||+|+|||
T Consensus 277 ~sp~~~~~lasgs~D~~i~iwd 298 (357)
T 4g56_B 277 YSYHSSPFLASISEDCTVAVLD 298 (357)
T ss_dssp ECSSSSCCEEEEETTSCEEEEC
T ss_pred EcCCCCCEEEEEeCCCEEEEEE
Confidence 99987 5899999999999997
No 64
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.96 E-value=9.9e-27 Score=244.64 Aligned_cols=237 Identities=16% Similarity=0.198 Sum_probs=199.0
Q ss_pred CCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004207 504 DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC 583 (768)
Q Consensus 504 ~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWd 583 (768)
..+.++++|+.|+.|++|..... .....+..|...|.+++|+|++++|++++.|+.|++|+
T Consensus 27 ~~~~~l~s~~~dg~v~vw~~~~~-------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~ 87 (313)
T 3odt_A 27 VDDSKVASVSRDGTVRLWSKDDQ-------------------WLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVP 87 (313)
T ss_dssp EETTEEEEEETTSEEEEEEESSS-------------------EEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred cCCCEEEEEEcCCcEEEEECCCC-------------------EEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEE
Confidence 45678999999999999965321 23456678999999999999999999999999999999
Q ss_pred CCCC---eEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEe
Q 004207 584 TESF---TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD 660 (768)
Q Consensus 584 l~t~---~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs 660 (768)
+... +.+..+.+|...|.+++| ++++|++++.|++|++|| . ...+..+..|...|.+++|+|....++++++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 162 (313)
T 3odt_A 88 LFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--E-GSLVYNLQAHNASVWDAKVVSFSENKFLTAS 162 (313)
T ss_dssp TTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--T-TEEEEEEECCSSCEEEEEEEETTTTEEEEEE
T ss_pred eeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--C-CcEEEecccCCCceeEEEEccCCCCEEEEEE
Confidence 8654 567788899999999999 577999999999999999 2 3457788889999999999994445777999
Q ss_pred CCCcEEEEECCCCeeEEEEe--cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecc-----------------
Q 004207 661 NNSEIRYWSINNGSCAGVFK--CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ----------------- 721 (768)
Q Consensus 661 ~Dg~I~iWDl~sg~~i~~~~--~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~----------------- 721 (768)
.|+.|++||. ...+..+. +...+.+++|+|++. +++++.|+.|++||+++......+.
T Consensus 163 ~d~~i~i~d~--~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~l 239 (313)
T 3odt_A 163 ADKTIKLWQN--DKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNGDI 239 (313)
T ss_dssp TTSCEEEEET--TEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSCE
T ss_pred CCCCEEEEec--CceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCCCE
Confidence 9999999994 45566555 467799999999876 9999999999999999876554432
Q ss_pred -------eeEEeecCCCceE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 722 -------TLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 722 -------~I~iwd~~~~~~~-~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
.|++||+.+++.. .+..|...|++++|+|++. |++++.||.|+|||
T Consensus 240 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~ 293 (313)
T 3odt_A 240 VSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFS 293 (313)
T ss_dssp EEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEE
T ss_pred EEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEe
Confidence 8999999888765 5678889999999999998 66799999999996
No 65
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.96 E-value=4.1e-27 Score=263.48 Aligned_cols=259 Identities=15% Similarity=0.242 Sum_probs=202.6
Q ss_pred CccccCC-CCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCC-EEEEEeCC
Q 004207 499 PNQLTDM-DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHD 576 (768)
Q Consensus 499 ~~~l~~~-~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~-~LaSgs~D 576 (768)
...+.+. ..++++|+.|+.|++|.......... .......+..+.+|...|++++|+|++. +|++|+.|
T Consensus 133 ~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~---------~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 203 (430)
T 2xyi_A 133 RARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE---------PSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDD 203 (430)
T ss_dssp EEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC---------TTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTT
T ss_pred EEEECCCCCcEEEEECCCCcEEEEECCCcccccC---------ccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCC
Confidence 3344443 57999999999999997643211100 0111334566779999999999999988 99999999
Q ss_pred CcEEEEECCCCeE-------EEEeccCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCC--eeEEEeecCCCCeEEE
Q 004207 577 KKAVLWCTESFTV-------KSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPD--YSLRTFTGHSTTVMSL 646 (768)
Q Consensus 577 g~I~VWdl~t~~~-------~~tl~~h~~~V~sl~fsp-dg~~LaTgs~DgtIrVWDl~t~~--~~~~~~~~h~~~V~sl 646 (768)
|.|+|||+.++.. ...+.+|...|.+++|+| ++.+|++++.|+.|++||++++. ..+..+..|...|.++
T Consensus 204 g~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i 283 (430)
T 2xyi_A 204 HTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCL 283 (430)
T ss_dssp SCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEE
T ss_pred CeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEE
Confidence 9999999987321 456778999999999999 67899999999999999999763 3466778899999999
Q ss_pred EEeCCCCeEEEEEeCCCcEEEEECCC-CeeEEEEe-cCCCeeEEEEecCCC-EEEEEEcCCeEEEEECCCceEeeeccee
Q 004207 647 DFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFK-CQSGATQMRFQPRLG-RILAAAIENYISILDVETQVCRLKLQTL 723 (768)
Q Consensus 647 afsp~g~~lLaSgs~Dg~I~iWDl~s-g~~i~~~~-~~~~i~sl~fsp~~~-~llags~Dg~I~IwD~~t~~~~~~~~~I 723 (768)
+|+|++..+|++|+.||.|++||+++ ..++..+. +...|.+++|+|++. .|++++.|+.|+|||+...........
T Consensus 284 ~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~- 362 (430)
T 2xyi_A 284 SFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTED- 362 (430)
T ss_dssp EECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHH-
T ss_pred EeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccc-
Confidence 99999988999999999999999998 56677776 467899999999985 588888999999999977322110000
Q ss_pred EEeecCCCceEEeccCCCCeeEEEEeCCCC-EEEEEECCCcEEEeC
Q 004207 724 ELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVASASHDKCVKIWK 768 (768)
Q Consensus 724 ~iwd~~~~~~~~l~~H~~~I~sla~spdg~-~LaSgs~DG~V~IWD 768 (768)
.-+........+.+|...|++++|+|++. +|++++.||.|+||+
T Consensus 363 -~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~ 407 (430)
T 2xyi_A 363 -AEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQ 407 (430)
T ss_dssp -HHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEE
T ss_pred -cccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeE
Confidence 00000122335568999999999999998 999999999999996
No 66
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.96 E-value=3.1e-27 Score=260.83 Aligned_cols=230 Identities=17% Similarity=0.221 Sum_probs=189.1
Q ss_pred EEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCC
Q 004207 508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTES 586 (768)
Q Consensus 508 ~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSp-dg~~LaSgs~Dg~I~VWdl~t 586 (768)
++++++.|+.|++|...... .....+..+.+|.+.|++++|+| ++.+|++|+.||+|+|||+.+
T Consensus 49 ~~~~~~~~g~i~v~~~~~~~---------------~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~ 113 (402)
T 2aq5_A 49 LICEASGGGAFLVLPLGKTG---------------RVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPD 113 (402)
T ss_dssp EEBCCSSSCCEEEEETTCCE---------------ECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCT
T ss_pred EEEEEcCCCEEEEEECccCC---------------CCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccC
Confidence 44568899999999653321 00112345679999999999999 999999999999999999998
Q ss_pred C-------eEEEEeccCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCCeeEEEe--ecCCCCeEEEEEeCCCCeEE
Q 004207 587 F-------TVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSLRTF--TGHSTTVMSLDFHPSKEDLL 656 (768)
Q Consensus 587 ~-------~~~~tl~~h~~~V~sl~fspdg-~~LaTgs~DgtIrVWDl~t~~~~~~~~--~~h~~~V~slafsp~g~~lL 656 (768)
+ +.+..+.+|...|.+++|+|++ .+|++++.|++|+|||+++++. +..+ .+|...|.+++|+|++. +|
T Consensus 114 ~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~-~l 191 (402)
T 2aq5_A 114 GGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAA-VLTLGPDVHPDTIYSVDWSRDGA-LI 191 (402)
T ss_dssp TCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEE-EEEECTTTCCSCEEEEEECTTSS-CE
T ss_pred CCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCc-cEEEecCCCCCceEEEEECCCCC-EE
Confidence 7 6678889999999999999997 6999999999999999998765 6667 78999999999999877 56
Q ss_pred EEEeCCCcEEEEECCCCeeEEEE-ecCC--CeeEEEEecCCCEEEEE---EcCCeEEEEECCCceEeeecceeEEeecCC
Q 004207 657 CSCDNNSEIRYWSINNGSCAGVF-KCQS--GATQMRFQPRLGRILAA---AIENYISILDVETQVCRLKLQTLELWNMTE 730 (768)
Q Consensus 657 aSgs~Dg~I~iWDl~sg~~i~~~-~~~~--~i~sl~fsp~~~~llag---s~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~ 730 (768)
++++.|+.|++||+++++++..+ ..+. .+.++.|+|++.+++++ +.|+.|++||+++.....
T Consensus 192 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~------------ 259 (402)
T 2aq5_A 192 CTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPL------------ 259 (402)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCS------------
T ss_pred EEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCc------------
Confidence 68889999999999999999888 4433 37899999998878777 589999999998754311
Q ss_pred CceEEeccCCCCeeEEEEeCCCCEEEEE-ECCCcEEEeC
Q 004207 731 NKTLTLSAHDKLVSSLAASTVNGMVASA-SHDKCVKIWK 768 (768)
Q Consensus 731 ~~~~~l~~H~~~I~sla~spdg~~LaSg-s~DG~V~IWD 768 (768)
......|...|.+++|+|++.+|+++ +.||.|+|||
T Consensus 260 --~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d 296 (402)
T 2aq5_A 260 --SLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFE 296 (402)
T ss_dssp --EEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEE
T ss_pred --eEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEE
Confidence 01122577789999999999998754 4799999996
No 67
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.95 E-value=3.5e-27 Score=259.09 Aligned_cols=237 Identities=17% Similarity=0.244 Sum_probs=195.8
Q ss_pred ccccCCCC-EEEee----------cCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCC
Q 004207 500 NQLTDMDR-FVDDG----------SLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK 568 (768)
Q Consensus 500 ~~l~~~~~-~latG----------S~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~ 568 (768)
..+.+.+. ++++| +.|+.|++|........ ..+.. ..|...|++++|+|++.
T Consensus 18 ~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~----------------~~~~~-~~~~~~v~~~~~s~~~~ 80 (416)
T 2pm9_A 18 FAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSE----------------KPIAS-LQVDSKFNDLDWSHNNK 80 (416)
T ss_dssp CCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGC----------------SCSCC-CCCSSCEEEEEECSSSS
T ss_pred EeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCC----------------cEEEE-EecCCceEEEEECCCCC
Confidence 34444544 88888 88999999966433100 01111 25788999999999999
Q ss_pred EEEEEeCCCcEEEEECCC----CeEEEEeccCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCC------ee--EEE
Q 004207 569 LLATGGHDKKAVLWCTES----FTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPD------YS--LRT 635 (768)
Q Consensus 569 ~LaSgs~Dg~I~VWdl~t----~~~~~tl~~h~~~V~sl~fspd-g~~LaTgs~DgtIrVWDl~t~~------~~--~~~ 635 (768)
+|++++.||.|+|||+.+ .+.+..+.+|...|++++|+|+ +.+|++++.|++|++||++++. .. +..
T Consensus 81 ~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~ 160 (416)
T 2pm9_A 81 IIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQ 160 (416)
T ss_dssp CEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCC
T ss_pred eEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccccccccccc
Confidence 999999999999999987 4588889999999999999998 8999999999999999998876 22 223
Q ss_pred eecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-------CCCeeEEEEecCC-CEEEEEEcCC---
Q 004207 636 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-------QSGATQMRFQPRL-GRILAAAIEN--- 704 (768)
Q Consensus 636 ~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-------~~~i~sl~fsp~~-~~llags~Dg--- 704 (768)
+..|...|.+++|+|++..+|++++.|+.|++||+++++++..+.. ...+.+++|+|++ ..+++++.|+
T Consensus 161 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~ 240 (416)
T 2pm9_A 161 SMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDP 240 (416)
T ss_dssp SCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSC
T ss_pred ccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCc
Confidence 4678999999999999777888999999999999999999888876 4679999999997 5788888888
Q ss_pred eEEEEECCCceEeeecceeEEeecCCCceEEec-cCCCCeeEEEEeC-CCCEEEEEECCCcEEEeC
Q 004207 705 YISILDVETQVCRLKLQTLELWNMTENKTLTLS-AHDKLVSSLAAST-VNGMVASASHDKCVKIWK 768 (768)
Q Consensus 705 ~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~-~H~~~I~sla~sp-dg~~LaSgs~DG~V~IWD 768 (768)
.|++||+++.... ...+. +|...|++++|+| ++.+|++++.||.|+|||
T Consensus 241 ~i~~~d~~~~~~~---------------~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd 291 (416)
T 2pm9_A 241 SILIWDLRNANTP---------------LQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWN 291 (416)
T ss_dssp CCCEEETTSTTSC---------------SBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEEC
T ss_pred eEEEEeCCCCCCC---------------cEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEee
Confidence 9999999874211 12344 7899999999999 899999999999999997
No 68
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.95 E-value=1.6e-26 Score=290.86 Aligned_cols=250 Identities=22% Similarity=0.392 Sum_probs=216.2
Q ss_pred ccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC
Q 004207 497 SAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD 576 (768)
Q Consensus 497 ~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~D 576 (768)
+....+.+.+.++++|+.|++|++|..... ..+..+.+|.+.|++++|+|++++|++|+.|
T Consensus 618 v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~-------------------~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d 678 (1249)
T 3sfz_A 618 VYHACFSQDGQRIASCGADKTLQVFKAETG-------------------EKLLDIKAHEDEVLCCAFSSDDSYIATCSAD 678 (1249)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTC-------------------CEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEEEEECCCCCEEEEEeCCCeEEEEECCCC-------------------CEEEEeccCCCCEEEEEEecCCCEEEEEeCC
Confidence 334455667789999999999999965433 2456778999999999999999999999999
Q ss_pred CcEEEEECCCCeEEEEeccCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCe
Q 004207 577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSP--SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED 654 (768)
Q Consensus 577 g~I~VWdl~t~~~~~tl~~h~~~V~sl~fsp--dg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~ 654 (768)
+.|+|||+.+++.+.++.+|...|.+++|+| ++.++++|+.|++|++||++++.. +..+.+|...|.+++|+|++.
T Consensus 679 ~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~-~~~~~~h~~~v~~~~~sp~~~- 756 (1249)
T 3sfz_A 679 KKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKEC-RNTMFGHTNSVNHCRFSPDDE- 756 (1249)
T ss_dssp SEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSE-EEEECCCSSCEEEEEECSSTT-
T ss_pred CeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcch-hheecCCCCCEEEEEEecCCC-
Confidence 9999999999999999999999999999999 566899999999999999998775 778889999999999999987
Q ss_pred EEEEEeCCCcEEEEECCCCeeEEEEecC--------------CCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeec
Q 004207 655 LLCSCDNNSEIRYWSINNGSCAGVFKCQ--------------SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL 720 (768)
Q Consensus 655 lLaSgs~Dg~I~iWDl~sg~~i~~~~~~--------------~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~ 720 (768)
+|++|+.||.|++||++++.....+... ..+.+++|+|++..+++++ ++.|.+||+.+.......
T Consensus 757 ~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~~~~~~ 835 (1249)
T 3sfz_A 757 LLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLLAEI 835 (1249)
T ss_dssp EEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTCCEEEEE
T ss_pred EEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEEEEEecCCCceeEE
Confidence 6669999999999999999887776532 2578899999998887776 789999999876544332
Q ss_pred c--------------------------eeEEeecCCCceE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 721 Q--------------------------TLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 721 ~--------------------------~I~iwd~~~~~~~-~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
. .+++||+.++... .+.+|...|++++|+|++.+|++++.||.|++||
T Consensus 836 ~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~ 910 (1249)
T 3sfz_A 836 HTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWE 910 (1249)
T ss_dssp ECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred cCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 1 6889999887665 5779999999999999999999999999999996
No 69
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.95 E-value=6.2e-27 Score=260.52 Aligned_cols=285 Identities=9% Similarity=0.148 Sum_probs=211.2
Q ss_pred cccCCCCCceEEEEecCC---C----------CcccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccC
Q 004207 474 LQHNGASSKSLLMFGSDG---M----------GSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVG 540 (768)
Q Consensus 474 l~~s~s~~~~~l~~~~~~---~----------~~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~ 540 (768)
+...++.+..+.+|.... . +...+....+.+.+.++++|+.|+.|++|.......+. ..+ .
T Consensus 78 ~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~--~~~---~- 151 (437)
T 3gre_A 78 YLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQES--EVK---F- 151 (437)
T ss_dssp EEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETT--EEE---E-
T ss_pred EEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCc--eee---c-
Confidence 456667788888887654 1 12234456667788999999999999999653111110 000 0
Q ss_pred CCceeeEEEEe--cC--CCCCeEEEE--EcCCCCEEEEEeCCCcEEEEECCCCeEEEEecc--CCCCEEEEEEcCCCCEE
Q 004207 541 KGFTFTEFQLI--PA--STSKVESCH--FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE--HTQWITDVRFSPSLSRL 612 (768)
Q Consensus 541 ~~~~~~~~~~l--~~--H~~~I~sl~--fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~--h~~~V~sl~fspdg~~L 612 (768)
.....+..+ .. +...+.++. +++++.+|++|+.|+.|++||+.+++++..+.. |...|++++|+|++.+|
T Consensus 152 --~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l 229 (437)
T 3gre_A 152 --LNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVL 229 (437)
T ss_dssp --EEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEE
T ss_pred --cccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEE
Confidence 011122222 23 678899998 668999999999999999999999999999988 88999999999999999
Q ss_pred EEEeCCCcEEEEECCCCCeeEEEee-cCCCCeEEEEEeCC---CCeEEEEEeCCCcEEEEECCCCeeEEEEec-------
Q 004207 613 ATSSADRTVRVWDTENPDYSLRTFT-GHSTTVMSLDFHPS---KEDLLCSCDNNSEIRYWSINNGSCAGVFKC------- 681 (768)
Q Consensus 613 aTgs~DgtIrVWDl~t~~~~~~~~~-~h~~~V~slafsp~---g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~------- 681 (768)
++|+.||+|+|||++++.. +..+. .|...|.+++|+|. ...+|++|+.|+.|++||+++++++..+..
T Consensus 230 ~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 308 (437)
T 3gre_A 230 ILGTTRGIIDIWDIRFNVL-IRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSM 308 (437)
T ss_dssp EEEETTSCEEEEETTTTEE-EEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCG
T ss_pred EEEcCCCeEEEEEcCCccE-EEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCcc
Confidence 9999999999999998654 56554 78889999988764 244788999999999999999999888873
Q ss_pred --------------------CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecce-------------------
Q 004207 682 --------------------QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQT------------------- 722 (768)
Q Consensus 682 --------------------~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~------------------- 722 (768)
...|.+++|+ ++.+|++++.|+.|++||+.+..+...+..
T Consensus 309 ~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (437)
T 3gre_A 309 EHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTM 387 (437)
T ss_dssp GGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEE
T ss_pred ceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEE
Confidence 2337889999 668899999999999999998765443320
Q ss_pred -eEEeecCC-CceEEeccCCCCeeEEEEeCC--CCEEEEEECCCcEEEeC
Q 004207 723 -LELWNMTE-NKTLTLSAHDKLVSSLAASTV--NGMVASASHDKCVKIWK 768 (768)
Q Consensus 723 -I~iwd~~~-~~~~~l~~H~~~I~sla~spd--g~~LaSgs~DG~V~IWD 768 (768)
+..|+... ........|.+.|++++|+++ +.+|++|+.||.|+||+
T Consensus 388 ~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 388 LLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp EEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred EEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 00011111 111123359999999999998 77999999999999996
No 70
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.95 E-value=1.5e-27 Score=255.91 Aligned_cols=206 Identities=20% Similarity=0.265 Sum_probs=166.6
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe--EEEEeccCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEE
Q 004207 550 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSP--SLSRLATSSADRTVRVWD 625 (768)
Q Consensus 550 ~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~--~~~tl~~h~~~V~sl~fsp--dg~~LaTgs~DgtIrVWD 625 (768)
.+.+|.+.|++++|+|+|++||+|+.|++|+|||+.+++ .+.++.+|...|++|+|++ ++++|++|+.|++|+|||
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd 87 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence 456899999999999999999999999999999998765 4678899999999999986 489999999999999999
Q ss_pred CCCCC-eeEEEeecCCCCeEEEEEeCCC-CeEEEEEeCCCcEEEEECCCCeeE---EEEe-cCCCeeEEEEecC------
Q 004207 626 TENPD-YSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCA---GVFK-CQSGATQMRFQPR------ 693 (768)
Q Consensus 626 l~t~~-~~~~~~~~h~~~V~slafsp~g-~~lLaSgs~Dg~I~iWDl~sg~~i---~~~~-~~~~i~sl~fsp~------ 693 (768)
++++. ..+..+.+|...|.+++|+|+. ..+|++|+.|+.|++||++.+... ..+. +...+.+++|+|+
T Consensus 88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 167 (316)
T 3bg1_A 88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSL 167 (316)
T ss_dssp CSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC---
T ss_pred CCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccc
Confidence 98764 3456788899999999999983 357889999999999999876322 2222 2456888999987
Q ss_pred -----------CCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCC----CEEEEE
Q 004207 694 -----------LGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVN----GMVASA 758 (768)
Q Consensus 694 -----------~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg----~~LaSg 758 (768)
+.+|++++.|+.|++||++...... ....+.+|...|.+++|+|++ .+|+++
T Consensus 168 ~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~-------------~~~~l~~h~~~V~~v~~sp~~~~~~~~las~ 234 (316)
T 3bg1_A 168 IDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWK-------------EEQKLEAHSDWVRDVAWAPSIGLPTSTIASC 234 (316)
T ss_dssp ---CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEE-------------EEECCBCCSSCEEEEECCCCSSCSCCEEEEE
T ss_pred cccccccCccccceEEEecCCCeEEEEEeCCCCccc-------------eeeecccCCCceEEEEecCCCCCCCceEEEE
Confidence 3679999999999999986431100 112456899999999999986 799999
Q ss_pred ECCCcEEEeC
Q 004207 759 SHDKCVKIWK 768 (768)
Q Consensus 759 s~DG~V~IWD 768 (768)
+.||+|+|||
T Consensus 235 s~D~~v~iw~ 244 (316)
T 3bg1_A 235 SQDGRVFIWT 244 (316)
T ss_dssp ETTCEEEEEE
T ss_pred cCCCeEEEEE
Confidence 9999999995
No 71
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=8.6e-27 Score=251.58 Aligned_cols=208 Identities=21% Similarity=0.309 Sum_probs=178.1
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC--CCeEEEEeccCCCCEEEEEEcCC--CCEEEEEeCCCcEEE
Q 004207 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE--SFTVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRV 623 (768)
Q Consensus 548 ~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~--t~~~~~tl~~h~~~V~sl~fspd--g~~LaTgs~DgtIrV 623 (768)
+..+.+|.+.|++++|+|++++|++|+.||.|+|||+. +.+.+..+.+|...|++++|+++ +.+|++++.||+|+|
T Consensus 4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~i 83 (379)
T 3jrp_A 4 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 83 (379)
T ss_dssp -CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred cEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEE
Confidence 45678999999999999999999999999999999998 56777889999999999999987 899999999999999
Q ss_pred EECCCCCe-eEEEeecCCCCeEEEEEeCC--CCeEEEEEeCCCcEEEEECCCCeeE--EEE-ecCCCeeEEEEec-----
Q 004207 624 WDTENPDY-SLRTFTGHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINNGSCA--GVF-KCQSGATQMRFQP----- 692 (768)
Q Consensus 624 WDl~t~~~-~~~~~~~h~~~V~slafsp~--g~~lLaSgs~Dg~I~iWDl~sg~~i--~~~-~~~~~i~sl~fsp----- 692 (768)
||++++.. .+..+..|...|.+++|+|+ +. +|++++.|+.|++||++.+... ..+ .+...|.+++|+|
T Consensus 84 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 162 (379)
T 3jrp_A 84 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGP-LLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 162 (379)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC---
T ss_pred EEcCCCceeEeeeecCCCcceEEEEeCCCCCCC-EEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccc
Confidence 99998762 46777889999999999998 55 6778999999999999987432 223 3467799999999
Q ss_pred --------CCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCC---CCEEEEEECC
Q 004207 693 --------RLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTV---NGMVASASHD 761 (768)
Q Consensus 693 --------~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spd---g~~LaSgs~D 761 (768)
++.++++++.|+.|++||+++...... ....+.+|...|++++|+|+ +.+|++++.|
T Consensus 163 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~------------~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d 230 (379)
T 3jrp_A 163 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYV------------LESTLEGHSDWVRDVAWSPTVLLRSYLASVSQD 230 (379)
T ss_dssp -------CTTCEEEEEETTSCEEEEEEETTTTEEE------------EEEEECCCSSCEEEEEECCCCSSSEEEEEEETT
T ss_pred cccccCCCCCCEEEEEeCCCeEEEEEecCCCccee------------eEEEEecccCcEeEEEECCCCCCCCeEEEEeCC
Confidence 689999999999999999876532211 12245689999999999999 8999999999
Q ss_pred CcEEEeC
Q 004207 762 KCVKIWK 768 (768)
Q Consensus 762 G~V~IWD 768 (768)
|.|+|||
T Consensus 231 g~i~iwd 237 (379)
T 3jrp_A 231 RTCIIWT 237 (379)
T ss_dssp SCEEEEE
T ss_pred CEEEEEe
Confidence 9999996
No 72
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.95 E-value=1.6e-27 Score=259.32 Aligned_cols=275 Identities=15% Similarity=0.142 Sum_probs=193.2
Q ss_pred ccCCCCCceEEEEecCCC----------CcccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCce
Q 004207 475 QHNGASSKSLLMFGSDGM----------GSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFT 544 (768)
Q Consensus 475 ~~s~s~~~~~l~~~~~~~----------~~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~ 544 (768)
...++.+..+.+|..... +...+....+.+.+.++++|+.|++|++|...... .
T Consensus 26 l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~----------------~ 89 (377)
T 3dwl_C 26 FVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDG----------------T 89 (377)
T ss_dssp EECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC----------------------C
T ss_pred EEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCC----------------c
Confidence 344555566666655432 22334455667778899999999999999654331 1
Q ss_pred eeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe---EEEEecc-CCCCEEEEEEcCCCCEEEEEeCCCc
Q 004207 545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT---VKSTLEE-HTQWITDVRFSPSLSRLATSSADRT 620 (768)
Q Consensus 545 ~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~---~~~tl~~-h~~~V~sl~fspdg~~LaTgs~Dgt 620 (768)
+.....+.+|...|++++|+|++++|++++.|+.|++||+++++ +...+.. |...|++++|+|++++|++++.|++
T Consensus 90 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~ 169 (377)
T 3dwl_C 90 WKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRK 169 (377)
T ss_dssp CCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSC
T ss_pred eeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCE
Confidence 23355677899999999999999999999999999999999877 4677777 9999999999999999999999999
Q ss_pred EEEEECCCC-----------------CeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCee----EEEE
Q 004207 621 VRVWDTENP-----------------DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC----AGVF 679 (768)
Q Consensus 621 IrVWDl~t~-----------------~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~----i~~~ 679 (768)
|++||++.. ...+..+ +|...|.+++|+|++. +|++++.|+.|++||++++++ +..+
T Consensus 170 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 247 (377)
T 3dwl_C 170 AYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGN-ALAYAGHDSSVTIAYPSAPEQPPRALITV 247 (377)
T ss_dssp EEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSS-CEEEEETTTEEC-CEECSTTSCEEECCCE
T ss_pred EEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCC-EEEEEeCCCcEEEEECCCCCCcceeeEee
Confidence 999998632 1234445 8999999999999987 666889999999999999877 5666
Q ss_pred ec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEe--eecc----------------------ee------E-Ee-
Q 004207 680 KC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCR--LKLQ----------------------TL------E-LW- 726 (768)
Q Consensus 680 ~~-~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~--~~~~----------------------~I------~-iw- 726 (768)
.. ...|.+++|+|++.+|++++.+ .+.+|+....... ..+. .+ . ++
T Consensus 248 ~~~~~~v~~~~~s~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (377)
T 3dwl_C 248 KLSQLPLRSLLWANESAIVAAGYNY-SPILLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRN 326 (377)
T ss_dssp ECSSSCEEEEEEEETTEEEEEESSS-SEEEECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC---------------
T ss_pred cCCCCceEEEEEcCCCCEEEEEcCC-cEEEEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccc
Confidence 54 4569999999998777666544 4557776532100 0000 00 0 00
Q ss_pred -ecCC---CceEEeccCCCCeeEEEEeCCC-C---EEEEEECCCcEEEeC
Q 004207 727 -NMTE---NKTLTLSAHDKLVSSLAASTVN-G---MVASASHDKCVKIWK 768 (768)
Q Consensus 727 -d~~~---~~~~~l~~H~~~I~sla~spdg-~---~LaSgs~DG~V~IWD 768 (768)
+... ........|.+.|+++++.+.. . .|+|||.||.|+|||
T Consensus 327 ~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWd 376 (377)
T 3dwl_C 327 MDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWT 376 (377)
T ss_dssp ----------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEEC
T ss_pred hhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEec
Confidence 0000 0001123599999999976544 3 699999999999997
No 73
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.95 E-value=3.3e-26 Score=255.83 Aligned_cols=234 Identities=22% Similarity=0.410 Sum_probs=201.8
Q ss_pred CCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004207 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (768)
Q Consensus 505 ~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl 584 (768)
.+.++++|+.|+.|++|+.... ..+..+.+|.+.|++++| ++++|++|+.||.|+|||+
T Consensus 142 d~~~l~~g~~dg~i~iwd~~~~-------------------~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~ 200 (435)
T 1p22_A 142 DDQKIVSGLRDNTIKIWDKNTL-------------------ECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDV 200 (435)
T ss_dssp CSSEEEEEESSSCEEEEESSSC-------------------CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEES
T ss_pred CCCEEEEEeCCCeEEEEeCCCC-------------------eEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEEC
Confidence 4678999999999999965322 245667899999999999 7899999999999999999
Q ss_pred CCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCee--EEEeecCCCCeEEEEEeCCCCeEEEEEeCC
Q 004207 585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS--LRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 662 (768)
Q Consensus 585 ~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~--~~~~~~h~~~V~slafsp~g~~lLaSgs~D 662 (768)
.+++.+.++.+|...|.+++|++ .+|++|+.||+|++||++++... ...+.+|...|.+++|. +. ++++|+.|
T Consensus 201 ~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~-~l~s~~~d 275 (435)
T 1p22_A 201 NTGEMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DK-YIVSASGD 275 (435)
T ss_dssp SSCCEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--TT-EEEEEETT
T ss_pred CCCcEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeC--CC-EEEEEeCC
Confidence 99999999999999999999974 59999999999999999876642 26778899999999994 33 77799999
Q ss_pred CcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecc--------------------
Q 004207 663 SEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ-------------------- 721 (768)
Q Consensus 663 g~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~-------------------- 721 (768)
|.|++||+++++++..+.. ...+.++.|+ +.++++++.|+.|++||++++.+...+.
T Consensus 276 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~sg~ 353 (435)
T 1p22_A 276 RTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGA 353 (435)
T ss_dssp SEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEECCSSEEEEEE
T ss_pred CeEEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEecCCEEEEEe
Confidence 9999999999999998885 5668888885 5699999999999999999876654432
Q ss_pred ---eeEEeecCCCc----------eEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 722 ---TLELWNMTENK----------TLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 722 ---~I~iwd~~~~~----------~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
.|++||+..+. ...+.+|.+.|++++| ++.+|++++.||.|+|||
T Consensus 354 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd 411 (435)
T 1p22_A 354 YDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD 411 (435)
T ss_dssp TTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC
T ss_pred CCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEE
Confidence 79999986654 4467899999999999 688999999999999997
No 74
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.95 E-value=6.3e-26 Score=250.78 Aligned_cols=224 Identities=19% Similarity=0.240 Sum_probs=189.4
Q ss_pred CCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEe-cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004207 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLI-PASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (768)
Q Consensus 506 ~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l-~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl 584 (768)
+..+++++.|+.|++|....+. ....+ ..|...|++++|+|++++|++|+.||.|+|||+
T Consensus 103 ~~~l~~~~~d~~v~lw~~~~~~-------------------~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 163 (401)
T 4aez_A 103 NLNVVAVALERNVYVWNADSGS-------------------VSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDV 163 (401)
T ss_dssp TTSEEEEEETTEEEEEETTTCC-------------------EEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred CCCEEEEECCCeEEEeeCCCCc-------------------EeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEEC
Confidence 3456778899999999664331 11222 238899999999999999999999999999999
Q ss_pred CCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCc
Q 004207 585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 664 (768)
Q Consensus 585 ~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~ 664 (768)
.+++.+..+.+|...|.+++|+ +.+|++++.||.|++||++.....+..+.+|...|.+++|+|++. +|++|+.|+.
T Consensus 164 ~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~ 240 (401)
T 4aez_A 164 ESQTKLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGL-QLASGGNDNV 240 (401)
T ss_dssp TTCCEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSC
T ss_pred cCCeEEEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCC-EEEEEeCCCe
Confidence 9999999999999999999994 579999999999999999976666888999999999999999876 6778999999
Q ss_pred EEEEECCCCeeEEEEe-cCCCeeEEEEecCCCEEEEEE---cCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCC
Q 004207 665 IRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAA---IENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHD 740 (768)
Q Consensus 665 I~iWDl~sg~~i~~~~-~~~~i~sl~fsp~~~~llags---~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~ 740 (768)
|++||++++.++..+. +...|.+++|+|++..+++.+ .|+.|++||+.++.....+ .|.
T Consensus 241 v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~-----------------~~~ 303 (401)
T 4aez_A 241 VQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTV-----------------DAG 303 (401)
T ss_dssp EEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEE-----------------ECS
T ss_pred EEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEE-----------------eCC
Confidence 9999999998888876 467799999999877666654 5999999999876553221 356
Q ss_pred CCeeEEEEeCCCCEEEEEE--CCCcEEEeC
Q 004207 741 KLVSSLAASTVNGMVASAS--HDKCVKIWK 768 (768)
Q Consensus 741 ~~I~sla~spdg~~LaSgs--~DG~V~IWD 768 (768)
..|.+++|+|++.+|++++ .||.|+|||
T Consensus 304 ~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~ 333 (401)
T 4aez_A 304 SQVTSLIWSPHSKEIMSTHGFPDNNLSIWS 333 (401)
T ss_dssp SCEEEEEECSSSSEEEEEECTTTCEEEEEE
T ss_pred CcEEEEEECCCCCeEEEEeecCCCcEEEEe
Confidence 7799999999999999954 899999996
No 75
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.95 E-value=3.3e-26 Score=245.60 Aligned_cols=220 Identities=17% Similarity=0.310 Sum_probs=186.5
Q ss_pred eeeEEEEecCCCCCeEEEEEcCC---CCEEEEEeCCCcEEEEECCC-CeEE-EEeccCCCCEEEEEEcCCCCEEEEEeCC
Q 004207 544 TFTEFQLIPASTSKVESCHFSPD---GKLLATGGHDKKAVLWCTES-FTVK-STLEEHTQWITDVRFSPSLSRLATSSAD 618 (768)
Q Consensus 544 ~~~~~~~l~~H~~~I~sl~fSpd---g~~LaSgs~Dg~I~VWdl~t-~~~~-~tl~~h~~~V~sl~fspdg~~LaTgs~D 618 (768)
.+..+..+.+|.+.|+|++|+|+ |++|++|+.||.|+|||+.+ +..+ ..+.+|...|++++|+|++++|++++.|
T Consensus 28 ~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d 107 (368)
T 3mmy_A 28 PMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCD 107 (368)
T ss_dssp TTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETT
T ss_pred CcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCC
Confidence 34567788999999999999998 69999999999999999987 5544 7888999999999999999999999999
Q ss_pred CcEEEEECCCCCeeEEEeecCCCCeEEEEE--eCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCE
Q 004207 619 RTVRVWDTENPDYSLRTFTGHSTTVMSLDF--HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGR 696 (768)
Q Consensus 619 gtIrVWDl~t~~~~~~~~~~h~~~V~slaf--sp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~ 696 (768)
|+|++||++++.. ..+..|...|.+++| ++++. +|++++.|+.|++||+++++++..+..+..+.++.+.+. .
T Consensus 108 g~v~iwd~~~~~~--~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~--~ 182 (368)
T 3mmy_A 108 KTAKMWDLSSNQA--IQIAQHDAPVKTIHWIKAPNYS-CVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYP--M 182 (368)
T ss_dssp SEEEEEETTTTEE--EEEEECSSCEEEEEEEECSSCE-EEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETT--E
T ss_pred CcEEEEEcCCCCc--eeeccccCceEEEEEEeCCCCC-EEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCC--e
Confidence 9999999998664 346679999999999 77754 677999999999999999999999998888877777754 8
Q ss_pred EEEEEcCCeEEEEECCCceEee-------------------------------ecceeEEeecCCCc----eEEeccCCC
Q 004207 697 ILAAAIENYISILDVETQVCRL-------------------------------KLQTLELWNMTENK----TLTLSAHDK 741 (768)
Q Consensus 697 llags~Dg~I~IwD~~t~~~~~-------------------------------~~~~I~iwd~~~~~----~~~l~~H~~ 741 (768)
+++++.++.+.+||++...... ....+++|++.... ...+..|..
T Consensus 183 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~ 262 (368)
T 3mmy_A 183 AVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRS 262 (368)
T ss_dssp EEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEE
T ss_pred eEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeec
Confidence 8899999999999997642111 11278899988752 345666665
Q ss_pred ------------CeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 742 ------------LVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 742 ------------~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
.|++++|+|++.+|++++.||.|+|||
T Consensus 263 ~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd 301 (368)
T 3mmy_A 263 NGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWD 301 (368)
T ss_dssp C----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEE
T ss_pred ccccccccccccceEEEEEecCCCEEEEEccCCeEEEEE
Confidence 799999999999999999999999997
No 76
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.95 E-value=7.8e-26 Score=242.74 Aligned_cols=220 Identities=17% Similarity=0.231 Sum_probs=188.7
Q ss_pred eEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004207 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (768)
Q Consensus 546 ~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWD 625 (768)
.....+.+|.+.|++++|+|++++|++++.||.|+|||+.+++.+..+.+|...|.+++|+|++++|++++.||+|++||
T Consensus 23 ~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 102 (369)
T 3zwl_B 23 MKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWD 102 (369)
T ss_dssp EEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEE
T ss_pred cccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence 34566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCC-----CcEEEEECCCCee-----------EEEEec-CC--Cee
Q 004207 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSC-----------AGVFKC-QS--GAT 686 (768)
Q Consensus 626 l~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~D-----g~I~iWDl~sg~~-----------i~~~~~-~~--~i~ 686 (768)
+++++. +..+. |...|.+++|+|++.. +++++.+ +.|++||++.... +..+.. .. .+.
T Consensus 103 ~~~~~~-~~~~~-~~~~v~~~~~~~~~~~-l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (369)
T 3zwl_B 103 VSNGQC-VATWK-SPVPVKRVEFSPCGNY-FLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAAT 179 (369)
T ss_dssp TTTCCE-EEEEE-CSSCEEEEEECTTSSE-EEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEE
T ss_pred CCCCcE-EEEee-cCCCeEEEEEccCCCE-EEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCcccee
Confidence 998775 55555 8889999999999874 4566667 9999999976532 222222 22 799
Q ss_pred EEEEecCCCEEEEEEcCCeEEEEECCC-ceEeeecc-------------------------eeEEeecCCCceEEeccCC
Q 004207 687 QMRFQPRLGRILAAAIENYISILDVET-QVCRLKLQ-------------------------TLELWNMTENKTLTLSAHD 740 (768)
Q Consensus 687 sl~fsp~~~~llags~Dg~I~IwD~~t-~~~~~~~~-------------------------~I~iwd~~~~~~~~l~~H~ 740 (768)
+++|+|++.++++++.|+.|++||+++ ......+. .|++||+.++.......+.
T Consensus 180 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~ 259 (369)
T 3zwl_B 180 VAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETD 259 (369)
T ss_dssp EEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECS
T ss_pred EEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecCC
Confidence 999999999999999999999999988 44333221 7999999998888666688
Q ss_pred CCeeEEEEeCCCCEEEEEECCC--------------cEEEeC
Q 004207 741 KLVSSLAASTVNGMVASASHDK--------------CVKIWK 768 (768)
Q Consensus 741 ~~I~sla~spdg~~LaSgs~DG--------------~V~IWD 768 (768)
..+.+++|+|++.+|++++.++ .|++||
T Consensus 260 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d 301 (369)
T 3zwl_B 260 CPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYH 301 (369)
T ss_dssp SCEEEEEECSSSSEEEEEECCC-------------CEEEEEE
T ss_pred CCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEe
Confidence 9999999999999999999998 788885
No 77
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.95 E-value=1.6e-25 Score=250.49 Aligned_cols=266 Identities=21% Similarity=0.343 Sum_probs=215.9
Q ss_pred cccCCCCCceEEEEecCCCCc------ccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeE
Q 004207 474 LQHNGASSKSLLMFGSDGMGS------LTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTE 547 (768)
Q Consensus 474 l~~s~s~~~~~l~~~~~~~~~------~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~ 547 (768)
....++.+..+.+|....... +......+...+.++++|+.|++|++|+.... ..
T Consensus 131 ~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~-------------------~~ 191 (445)
T 2ovr_B 131 RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETG-------------------EC 191 (445)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETTEEEEEETTSCEEEEETTTT-------------------EE
T ss_pred EEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEecCCEEEEEeCCCeEEEEECCcC-------------------cE
Confidence 445566777788887654311 11111222223679999999999999965322 34
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004207 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (768)
Q Consensus 548 ~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~ 627 (768)
+..+.+|...|.+++|+ +++|++|+.||.|++||+.+++.+..+.+|...|.+++| ++.+|++|+.||.|++||++
T Consensus 192 ~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~ 267 (445)
T 2ovr_B 192 IHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPE 267 (445)
T ss_dssp EEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGG
T ss_pred EEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECC
Confidence 56678999999999995 678999999999999999999999999999999999999 67899999999999999999
Q ss_pred CCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecC-CCeeEEEEecCCCEEEEEEcCCeE
Q 004207 628 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYI 706 (768)
Q Consensus 628 t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~-~~i~sl~fsp~~~~llags~Dg~I 706 (768)
+++. +..+.+|...|.+++| ++. .+++++.|+.|++||+++++++..+..+ ..+.++.++ +.++++++.|+.|
T Consensus 268 ~~~~-~~~~~~~~~~v~~~~~--~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i 341 (445)
T 2ovr_B 268 TETC-LHTLQGHTNRVYSLQF--DGI-HVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTV 341 (445)
T ss_dssp GTEE-EEEECCCSSCEEEEEE--CSS-EEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCE
T ss_pred CCcE-eEEecCCCCceEEEEE--CCC-EEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe--CCEEEEEeCCCeE
Confidence 8664 7888899999999999 434 6779999999999999999999888753 456666665 5699999999999
Q ss_pred EEEECCCceEeeecc--------------------------eeEEeecCCCceEE-e-----ccCCCCeeEEEEeCCCCE
Q 004207 707 SILDVETQVCRLKLQ--------------------------TLELWNMTENKTLT-L-----SAHDKLVSSLAASTVNGM 754 (768)
Q Consensus 707 ~IwD~~t~~~~~~~~--------------------------~I~iwd~~~~~~~~-l-----~~H~~~I~sla~spdg~~ 754 (768)
++||++++.....+. .|++||+.+++.+. + ..|.+.|++++|+|++.+
T Consensus 342 ~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 421 (445)
T 2ovr_B 342 KIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLV 421 (445)
T ss_dssp EEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEE
T ss_pred EEEECCCCcEEEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEE
Confidence 999998775543321 79999999887663 3 378899999999999999
Q ss_pred EEEEECCCc----EEEeC
Q 004207 755 VASASHDKC----VKIWK 768 (768)
Q Consensus 755 LaSgs~DG~----V~IWD 768 (768)
|++|+.||+ |.|||
T Consensus 422 la~~~~dg~~~~~l~v~d 439 (445)
T 2ovr_B 422 CAVGSRNGTEETKLLVLD 439 (445)
T ss_dssp EEEECSSSSSCCEEEEEE
T ss_pred EEEcccCCCCccEEEEEE
Confidence 999999998 99986
No 78
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.95 E-value=2.9e-26 Score=253.07 Aligned_cols=265 Identities=15% Similarity=0.188 Sum_probs=207.2
Q ss_pred cccCCCCCceEEEEecCCC------------CcccccCccccC-CCCEEEeecCCCcEEEeecCCCCCCCCccccccccC
Q 004207 474 LQHNGASSKSLLMFGSDGM------------GSLTSAPNQLTD-MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVG 540 (768)
Q Consensus 474 l~~s~s~~~~~l~~~~~~~------------~~~~~~~~~l~~-~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~ 540 (768)
+...++.+..+.+|..... +...+....+.+ .+.++++|+.|+.|++|.........
T Consensus 49 ~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~---------- 118 (402)
T 2aq5_A 49 LICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVL---------- 118 (402)
T ss_dssp EEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSS----------
T ss_pred EEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCcc----------
Confidence 3344566777777775432 222334555666 78899999999999999765542110
Q ss_pred CCceeeEEEEecCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCeEEEEe--ccCCCCEEEEEEcCCCCEEEEEeC
Q 004207 541 KGFTFTEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTESFTVKSTL--EEHTQWITDVRFSPSLSRLATSSA 617 (768)
Q Consensus 541 ~~~~~~~~~~l~~H~~~I~sl~fSpdg-~~LaSgs~Dg~I~VWdl~t~~~~~tl--~~h~~~V~sl~fspdg~~LaTgs~ 617 (768)
.....+..+.+|...|++++|+|++ .+|++++.|+.|+|||+.+++.+..+ ..|...|.+++|+|++++|++++.
T Consensus 119 --~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 196 (402)
T 2aq5_A 119 --PLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCR 196 (402)
T ss_dssp --CBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEET
T ss_pred --ccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEec
Confidence 0012355677999999999999998 69999999999999999999999999 889999999999999999999999
Q ss_pred CCcEEEEECCCCCeeEEEe-ecCCCC-eEEEEEeCCCCeEEEEE---eCCCcEEEEECCCCee-E--EEEecCCCeeEEE
Q 004207 618 DRTVRVWDTENPDYSLRTF-TGHSTT-VMSLDFHPSKEDLLCSC---DNNSEIRYWSINNGSC-A--GVFKCQSGATQMR 689 (768)
Q Consensus 618 DgtIrVWDl~t~~~~~~~~-~~h~~~-V~slafsp~g~~lLaSg---s~Dg~I~iWDl~sg~~-i--~~~~~~~~i~sl~ 689 (768)
|+.|+|||+++++. +..+ .+|.+. +.++.|+|++. +|++| +.|+.|++||++++.. + ..+.+...+.+++
T Consensus 197 d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 274 (402)
T 2aq5_A 197 DKRVRVIEPRKGTV-VAEKDRPHEGTRPVHAVFVSEGK-ILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPF 274 (402)
T ss_dssp TSEEEEEETTTTEE-EEEEECSSCSSSCCEEEECSTTE-EEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEE
T ss_pred CCcEEEEeCCCCce-eeeeccCCCCCcceEEEEcCCCc-EEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEE
Confidence 99999999998765 5555 678766 89999999965 67677 6899999999998654 3 3334567799999
Q ss_pred EecCCCEEEEEE-cCCeEEEEECCCceE-eeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 004207 690 FQPRLGRILAAA-IENYISILDVETQVC-RLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 767 (768)
Q Consensus 690 fsp~~~~llags-~Dg~I~IwD~~t~~~-~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IW 767 (768)
|+|++.++++++ .|+.|++||+.+... ... +....|...|.+++|+|++.++++ .|+.+++|
T Consensus 275 ~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~--------------l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~ 338 (402)
T 2aq5_A 275 FDPDTNIVYLCGKGDSSIRYFEITSEAPFLHY--------------LSMFSSKESQRGMGYMPKRGLEVN--KCEIARFY 338 (402)
T ss_dssp EETTTTEEEEEETTCSCEEEEEECSSTTCEEE--------------EEEECCSSCCSEEEECCGGGSCGG--GTEEEEEE
T ss_pred EcCCCCEEEEEEcCCCeEEEEEecCCCcceEe--------------ecccccCCcccceEEeccccccee--cceeEEEE
Confidence 999999987665 699999999987542 111 111236789999999999988764 57799999
Q ss_pred C
Q 004207 768 K 768 (768)
Q Consensus 768 D 768 (768)
+
T Consensus 339 ~ 339 (402)
T 2aq5_A 339 K 339 (402)
T ss_dssp E
T ss_pred E
Confidence 5
No 79
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.95 E-value=4.8e-26 Score=240.95 Aligned_cols=204 Identities=17% Similarity=0.260 Sum_probs=174.7
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC----eEEEEeccCCCCEEEEEEcC--CCCEEEEEeCCCcEEE
Q 004207 550 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF----TVKSTLEEHTQWITDVRFSP--SLSRLATSSADRTVRV 623 (768)
Q Consensus 550 ~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~----~~~~tl~~h~~~V~sl~fsp--dg~~LaTgs~DgtIrV 623 (768)
.+.+|.+.|++++|+|++++|++|+.||.|+|||+.++ +....+.+|...|++++|+| ++.+|++++.||+|+|
T Consensus 6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~v 85 (351)
T 3f3f_A 6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKL 85 (351)
T ss_dssp EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEE
Confidence 45799999999999999999999999999999999876 56778889999999999999 6999999999999999
Q ss_pred EECCCCC--------eeEEEeecCCCCeEEEEEeCC--CCeEEEEEeCCCcEEEEECCCCeeEEEEe-------------
Q 004207 624 WDTENPD--------YSLRTFTGHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINNGSCAGVFK------------- 680 (768)
Q Consensus 624 WDl~t~~--------~~~~~~~~h~~~V~slafsp~--g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~------------- 680 (768)
||++++. ..+..+.+|...|.+++|+|+ +. +|++++.|+.|++||+++++.+..+.
T Consensus 86 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 164 (351)
T 3f3f_A 86 WEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL-KLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA 164 (351)
T ss_dssp EEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred EecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCc-EEEEecCCCcEEEecCCChHHhccccccccccccccccC
Confidence 9998764 446778889999999999998 65 66688999999999999876543332
Q ss_pred -cCCCeeEEEEecC---CCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCC----
Q 004207 681 -CQSGATQMRFQPR---LGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVN---- 752 (768)
Q Consensus 681 -~~~~i~sl~fsp~---~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg---- 752 (768)
+...+.+++|+|+ +..+++++.++.+.+|+........ ...+.+|...|++++|+|++
T Consensus 165 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~h~~~i~~~~~~p~~~~~~ 230 (351)
T 3f3f_A 165 NHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHV--------------AAKLPGHKSLIRSISWAPSIGRWY 230 (351)
T ss_dssp SCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEE--------------EEECCCCCSCEEEEEECCCSSCSS
T ss_pred CcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceee--------------eeecCCCCcceeEEEECCCCCCcc
Confidence 2456899999997 8899999999999877776653311 22455899999999999998
Q ss_pred CEEEEEECCCcEEEeC
Q 004207 753 GMVASASHDKCVKIWK 768 (768)
Q Consensus 753 ~~LaSgs~DG~V~IWD 768 (768)
.+|++++.||.|+|||
T Consensus 231 ~~l~s~~~dg~i~iwd 246 (351)
T 3f3f_A 231 QLIATGCKDGRIRIFK 246 (351)
T ss_dssp EEEEEEETTSCEEEEE
T ss_pred eEEEEEcCCCeEEEEe
Confidence 8999999999999997
No 80
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.5e-26 Score=277.95 Aligned_cols=242 Identities=16% Similarity=0.209 Sum_probs=200.7
Q ss_pred CccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCC--CCEEEEEeCC
Q 004207 499 PNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD--GKLLATGGHD 576 (768)
Q Consensus 499 ~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpd--g~~LaSgs~D 576 (768)
...+.+.+.++++|+.|+.|++|.... .....+..+.+|.+.|++++|+++ +.+|++|+.|
T Consensus 14 ~l~~s~dg~~latg~~dg~I~vwd~~~-----------------~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~D 76 (753)
T 3jro_A 14 DAVLDYYGKRLATCSSDKTIKIFEVEG-----------------ETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD 76 (753)
T ss_dssp EECCCSSSCCEEEEETTTEEEEEEEET-----------------TEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETT
T ss_pred EEEECCCCCeEEEEECCCcEEEEecCC-----------------CCCccceeccCCcCceEEEEecCCCCCCEEEEEeCC
Confidence 334455677899999999999995431 133566788899999999999988 9999999999
Q ss_pred CcEEEEECCCCe--EEEEeccCCCCEEEEEEcCC--CCEEEEEeCCCcEEEEECCCCC-eeEEEeecCCCCeEEEEEeCC
Q 004207 577 KKAVLWCTESFT--VKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVWDTENPD-YSLRTFTGHSTTVMSLDFHPS 651 (768)
Q Consensus 577 g~I~VWdl~t~~--~~~tl~~h~~~V~sl~fspd--g~~LaTgs~DgtIrVWDl~t~~-~~~~~~~~h~~~V~slafsp~ 651 (768)
|.|+|||+.+++ .+..+.+|...|++++|+|+ +.+|++|+.||+|++||++++. .....+.+|...|.+++|+|.
T Consensus 77 g~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~ 156 (753)
T 3jro_A 77 GKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPA 156 (753)
T ss_dssp SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCC
T ss_pred CeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCc
Confidence 999999999887 67788899999999999999 9999999999999999998763 234567789999999999994
Q ss_pred ------------CCeEEEEEeCCCcEEEEECCCC----eeEEEEec-CCCeeEEEEecC---CCEEEEEEcCCeEEEEEC
Q 004207 652 ------------KEDLLCSCDNNSEIRYWSINNG----SCAGVFKC-QSGATQMRFQPR---LGRILAAAIENYISILDV 711 (768)
Q Consensus 652 ------------g~~lLaSgs~Dg~I~iWDl~sg----~~i~~~~~-~~~i~sl~fsp~---~~~llags~Dg~I~IwD~ 711 (768)
...+|++|+.||.|++||++++ .++..+.. ...|.+++|+|+ +.++++++.|+.|++||+
T Consensus 157 ~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~ 236 (753)
T 3jro_A 157 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQ 236 (753)
T ss_dssp C---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEE
T ss_pred ccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecC
Confidence 2346779999999999999877 44445543 567999999999 889999999999999999
Q ss_pred CCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 712 ETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 712 ~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
.+....... .......|...|++++|+|++.+|++++.||.|+|||
T Consensus 237 ~~~~~~~~~-----------~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd 282 (753)
T 3jro_A 237 DNEQGPWKK-----------TLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK 282 (753)
T ss_dssp SSSSSCCBC-----------CBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCB
T ss_pred CCCCCccee-----------EEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEe
Confidence 875321110 1122346888999999999999999999999999996
No 81
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.95 E-value=2.2e-25 Score=249.40 Aligned_cols=233 Identities=22% Similarity=0.418 Sum_probs=202.0
Q ss_pred CCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004207 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (768)
Q Consensus 505 ~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl 584 (768)
.+.++++|+.|++|++|+.... ..+..+.+|.+.|.+++|+ +.+|++|+.||+|++||+
T Consensus 128 ~g~~l~sg~~dg~i~vwd~~~~-------------------~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~ 186 (445)
T 2ovr_B 128 CGNRIVSGSDDNTLKVWSAVTG-------------------KCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNA 186 (445)
T ss_dssp ETTEEEEEETTSCEEEEETTTC-------------------CEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEET
T ss_pred cCCEEEEEECCCcEEEEECCCC-------------------cEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEEC
Confidence 3678999999999999965432 2456778999999999997 679999999999999999
Q ss_pred CCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCc
Q 004207 585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 664 (768)
Q Consensus 585 ~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~ 664 (768)
.+++.+.++.+|...|.+++|+ +.+|++|+.||+|++||+++++. +..+.+|...|.+++| ++. ++++|+.|+.
T Consensus 187 ~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~-~~~~~~~~~~v~~~~~--~~~-~l~~~~~dg~ 260 (445)
T 2ovr_B 187 ETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQC-LHVLMGHVAAVRCVQY--DGR-RVVSGAYDFM 260 (445)
T ss_dssp TTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCE-EEEEECCSSCEEEEEE--CSS-CEEEEETTSC
T ss_pred CcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcE-EEEEcCCcccEEEEEE--CCC-EEEEEcCCCE
Confidence 9999999999999999999996 56899999999999999998775 7788899999999999 334 6778999999
Q ss_pred EEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecc----------------------
Q 004207 665 IRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ---------------------- 721 (768)
Q Consensus 665 I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~---------------------- 721 (768)
|++||+++++++..+.. ...+.++.| ++.++++++.|+.|++||++++.+...+.
T Consensus 261 i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d 338 (445)
T 2ovr_B 261 VKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNAD 338 (445)
T ss_dssp EEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEETTEEEEEETT
T ss_pred EEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEeCCEEEEEeCC
Confidence 99999999999988874 567888888 67899999999999999998876654432
Q ss_pred -eeEEeecCCCceE-Eecc---CCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 722 -TLELWNMTENKTL-TLSA---HDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 722 -~I~iwd~~~~~~~-~l~~---H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
.|++||+.+++.. .+.. |...|++++|+ +.+|++|+.||.|+|||
T Consensus 339 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd 388 (445)
T 2ovr_B 339 STVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWD 388 (445)
T ss_dssp SCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEE
T ss_pred CeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEE
Confidence 7999999887765 4444 88899999996 68999999999999996
No 82
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.95 E-value=6.7e-26 Score=243.17 Aligned_cols=227 Identities=20% Similarity=0.243 Sum_probs=182.5
Q ss_pred CCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004207 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (768)
Q Consensus 506 ~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~ 585 (768)
+.++++|+.|+.|++|...... ......+.+|.+.|++++|+|++++|++++.||.|+|||+.
T Consensus 54 g~~l~~~~~dg~i~iw~~~~~~-----------------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~ 116 (368)
T 3mmy_A 54 GNFLIAGSWANDVRCWEVQDSG-----------------QTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLS 116 (368)
T ss_dssp SEEEEEEETTSEEEEEEECTTS-----------------CEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred ceEEEEECCCCcEEEEEcCCCC-----------------ceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcC
Confidence 4799999999999999664321 12235667899999999999999999999999999999999
Q ss_pred CCeEEEEeccCCCCEEEEEE--cCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCC-----------------------
Q 004207 586 SFTVKSTLEEHTQWITDVRF--SPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS----------------------- 640 (768)
Q Consensus 586 t~~~~~tl~~h~~~V~sl~f--spdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~----------------------- 640 (768)
+++.+. +..|...|++++| ++++.+|++++.|++|++||+++++. +..+..+.
T Consensus 117 ~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 194 (368)
T 3mmy_A 117 SNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNP-MMVLQLPERCYCADVIYPMAVVATAERGLIV 194 (368)
T ss_dssp TTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSC-SEEEECSSCEEEEEEETTEEEEEEGGGCEEE
T ss_pred CCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcE-EEEEecCCCceEEEecCCeeEEEeCCCcEEE
Confidence 988776 5569999999999 89999999999999999999987654 33333221
Q ss_pred ------------------CCeEEEEEeCCCC---eEEEEEeCCCcEEEEECCCC---eeEEEEecCC-------------
Q 004207 641 ------------------TTVMSLDFHPSKE---DLLCSCDNNSEIRYWSINNG---SCAGVFKCQS------------- 683 (768)
Q Consensus 641 ------------------~~V~slafsp~g~---~lLaSgs~Dg~I~iWDl~sg---~~i~~~~~~~------------- 683 (768)
..+.++++.++.. ..+++++.|+.|++||++.. ..+..+..+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (368)
T 3mmy_A 195 YQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIY 274 (368)
T ss_dssp EECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEEC
T ss_pred EEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeeccccccccccccc
Confidence 2344444444322 23778999999999999887 4556666543
Q ss_pred CeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCc
Q 004207 684 GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKC 763 (768)
Q Consensus 684 ~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~ 763 (768)
.|.+++|+|++.+|++++.|+.|++||+.++.+.. .+..|...|++++|+|++.+|++++.|+.
T Consensus 275 ~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~----------------~~~~~~~~v~~~~~s~~g~~l~~~s~d~~ 338 (368)
T 3mmy_A 275 AVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLK----------------TSEQLDQPISACCFNHNGNIFAYASSYDW 338 (368)
T ss_dssp CEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEE----------------ECCCCSSCEEEEEECTTSSCEEEEECCCS
T ss_pred ceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEE----------------EecCCCCCceEEEECCCCCeEEEEecccc
Confidence 59999999999999999999999999998876543 33478999999999999999999999986
Q ss_pred EEEe
Q 004207 764 VKIW 767 (768)
Q Consensus 764 V~IW 767 (768)
.+.|
T Consensus 339 ~~~~ 342 (368)
T 3mmy_A 339 SKGH 342 (368)
T ss_dssp TTCG
T ss_pred cccc
Confidence 5544
No 83
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.95 E-value=1.7e-26 Score=246.73 Aligned_cols=233 Identities=13% Similarity=0.114 Sum_probs=186.0
Q ss_pred cCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEE
Q 004207 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVL 581 (768)
Q Consensus 503 ~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~-~LaSgs~Dg~I~V 581 (768)
.+.+.++++|+.|+.|++|...... .......+.+|...|++++|+|+++ +|++|+.||.|++
T Consensus 20 s~~~~~l~~~~~d~~v~iw~~~~~~----------------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~ 83 (342)
T 1yfq_A 20 IPSKSLLLITSWDGSLTVYKFDIQA----------------KNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILK 83 (342)
T ss_dssp EGGGTEEEEEETTSEEEEEEEETTT----------------TEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEE
T ss_pred cCCCCEEEEEcCCCeEEEEEeCCCC----------------ccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEE
Confidence 3356789999999999999654321 1122344558999999999999999 9999999999999
Q ss_pred EEC-CCCeEEEEecc--CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC---------CCeeEEEeecCCCCeEEEEEe
Q 004207 582 WCT-ESFTVKSTLEE--HTQWITDVRFSPSLSRLATSSADRTVRVWDTEN---------PDYSLRTFTGHSTTVMSLDFH 649 (768)
Q Consensus 582 Wdl-~t~~~~~tl~~--h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t---------~~~~~~~~~~h~~~V~slafs 649 (768)
||+ .+++. ..+.+ |...|.+++|+| +.+|++++.|+.|++||+++ ++. +..+. |...|.+++|+
T Consensus 84 wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~-~~~~v~~~~~~ 159 (342)
T 1yfq_A 84 VDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLN-SNNTK-VKNKIFTMDTN 159 (342)
T ss_dssp ECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESC-SSSSS-SCCCEEEEEEC
T ss_pred EEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCe-eeEEe-eCCceEEEEec
Confidence 999 87765 67788 999999999999 99999999999999999886 442 33444 88999999999
Q ss_pred CCCCeEEEEEeCCCcEEEEECCC-CeeE---EEEecCCCeeEEEEec-CCCEEEEEEcCCeEEEEECCCceEeeecceeE
Q 004207 650 PSKEDLLCSCDNNSEIRYWSINN-GSCA---GVFKCQSGATQMRFQP-RLGRILAAAIENYISILDVETQVCRLKLQTLE 724 (768)
Q Consensus 650 p~g~~lLaSgs~Dg~I~iWDl~s-g~~i---~~~~~~~~i~sl~fsp-~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~ 724 (768)
+++ +++++.|+.|++||+++ +... ....+...+.+++|+| ++.++++++.|+.|++||++.......
T Consensus 160 ~~~---l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~----- 231 (342)
T 1yfq_A 160 SSR---LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYN----- 231 (342)
T ss_dssp SSE---EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTT-----
T ss_pred CCc---EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccc-----
Confidence 875 67889999999999998 5432 2223466799999999 999999999999999999876510000
Q ss_pred EeecCCCceEEecc---------CCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 725 LWNMTENKTLTLSA---------HDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 725 iwd~~~~~~~~l~~---------H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
......+.. |...|++++|+|++.+|++++.||.|+|||
T Consensus 232 -----~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd 279 (342)
T 1yfq_A 232 -----SSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWN 279 (342)
T ss_dssp -----CTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEE
T ss_pred -----cccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEc
Confidence 001112233 455999999999999999999999999997
No 84
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.95 E-value=1.5e-25 Score=258.76 Aligned_cols=252 Identities=17% Similarity=0.259 Sum_probs=209.4
Q ss_pred ccCccccC--CCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEe
Q 004207 497 SAPNQLTD--MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG 574 (768)
Q Consensus 497 ~~~~~l~~--~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs 574 (768)
+....+.+ .+.+|++|+.|+.|++|....+.. ...........+..|...|.+++|+|++++|++++
T Consensus 67 v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~-----------~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 135 (615)
T 1pgu_A 67 VTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKE-----------SNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVG 135 (615)
T ss_dssp EEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGG-----------GTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred EEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcc-----------cccccccccchhhcccccEEEEEEeCCCCEEEEec
Confidence 55666778 889999999999999996532200 00112345667788999999999999999999999
Q ss_pred CC----CcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCCeeEEEeecCCC---CeEEE
Q 004207 575 HD----KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPDYSLRTFTGHST---TVMSL 646 (768)
Q Consensus 575 ~D----g~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~-~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~---~V~sl 646 (768)
.| +.|++|| +++.+..+.+|...|++++|+|++. +|++++.|++|++||+.+++. +..+.+|.. .|.++
T Consensus 136 ~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~-~~~~~~~~~~~~~v~~~ 212 (615)
T 1pgu_A 136 EGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKF-SASDRTHHKQGSFVRDV 212 (615)
T ss_dssp CCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEE-EEEECSSSCTTCCEEEE
T ss_pred cCCCCccEEEEEE--CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcce-eeeecccCCCCceEEEE
Confidence 88 6888888 6678889999999999999999987 899999999999999987664 778888998 99999
Q ss_pred EEeCC-CCeEEEEEeCCCcEEEEECCCCeeEEEE-----ecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeec
Q 004207 647 DFHPS-KEDLLCSCDNNSEIRYWSINNGSCAGVF-----KCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL 720 (768)
Q Consensus 647 afsp~-g~~lLaSgs~Dg~I~iWDl~sg~~i~~~-----~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~ 720 (768)
+|+|+ +. +|++++.|+.|++||+++++.+..+ .+...|.+++|+ ++.++++++.|+.|++||+++......+
T Consensus 213 ~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~ 290 (615)
T 1pgu_A 213 EFSPDSGE-FVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKW 290 (615)
T ss_dssp EECSTTCC-EEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred EECCCCCC-EEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEE
Confidence 99999 66 6668899999999999999999988 567789999999 9999999999999999999877654322
Q ss_pred ----------------------------ceeEEeecCCCceE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 721 ----------------------------QTLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 721 ----------------------------~~I~iwd~~~~~~~-~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
..+++||+..++.. .+.+|...|++++| |+ |++++.||.|++||
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~---l~~~~~dg~i~~w~ 363 (615)
T 1pgu_A 291 TLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NP---LISGSYDGRIMEWS 363 (615)
T ss_dssp ECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TT---TEEEETTSCEEETT
T ss_pred cCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cC---cEEECCCCeEEEEE
Confidence 16889998876554 56688888888888 76 77777778877775
No 85
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.95 E-value=4.5e-26 Score=270.59 Aligned_cols=205 Identities=22% Similarity=0.361 Sum_probs=176.6
Q ss_pred eEEEEecCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCC-----CeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCC
Q 004207 546 TEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTES-----FTVKSTLEEHTQWITDVRFSPSLSRLATSSADR 619 (768)
Q Consensus 546 ~~~~~l~~H~~~I~sl~fSpdg-~~LaSgs~Dg~I~VWdl~t-----~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~Dg 619 (768)
.....+++|.+.|+||+|++++ ++|++|+.|++|+|||+.+ +.....+.+|...|.+++|+|++++|++|+.|+
T Consensus 373 ~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg 452 (694)
T 3dm0_A 373 VLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDG 452 (694)
T ss_dssp EEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred chhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCC
Confidence 4455688999999999999864 7999999999999999875 345678899999999999999999999999999
Q ss_pred cEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEe----cCCCeeEEEEecCC-
Q 004207 620 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK----CQSGATQMRFQPRL- 694 (768)
Q Consensus 620 tIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~----~~~~i~sl~fsp~~- 694 (768)
+|+|||+.++.. +..+.+|...|.+++|+|++. +|++|+.|++|++||+.......... +...|.+++|+|++
T Consensus 453 ~v~vwd~~~~~~-~~~~~~h~~~v~~~~~s~~~~-~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 530 (694)
T 3dm0_A 453 ELRLWDLAAGVS-TRRFVGHTKDVLSVAFSLDNR-QIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTL 530 (694)
T ss_dssp EEEEEETTTTEE-EEEEECCSSCEEEEEECTTSS-CEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSS
T ss_pred cEEEEECCCCcc-eeEEeCCCCCEEEEEEeCCCC-EEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCC
Confidence 999999998764 788899999999999999987 55699999999999987554333322 24559999999986
Q ss_pred -CEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 695 -GRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 695 -~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
..+++++.|+.|++||+++..+.. .+.+|.+.|++++|+|++.+|++|+.||+|+|||
T Consensus 531 ~~~l~s~s~d~~v~vwd~~~~~~~~----------------~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd 589 (694)
T 3dm0_A 531 QPTIVSASWDKTVKVWNLSNCKLRS----------------TLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWD 589 (694)
T ss_dssp SCEEEEEETTSCEEEEETTTCCEEE----------------EECCCSSCEEEEEECTTSSEEEEEETTSBCEEEE
T ss_pred cceEEEEeCCCeEEEEECCCCcEEE----------------EEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence 579999999999999998765432 4458999999999999999999999999999997
No 86
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.95 E-value=3e-26 Score=246.09 Aligned_cols=218 Identities=13% Similarity=0.225 Sum_probs=185.1
Q ss_pred EecCCCCCeEEEEEcCC----CCEEEEEeCCCcEEEEECCCCeEEEEecc-----CCCCEEEEEEcCC----CCEEEEEe
Q 004207 550 LIPASTSKVESCHFSPD----GKLLATGGHDKKAVLWCTESFTVKSTLEE-----HTQWITDVRFSPS----LSRLATSS 616 (768)
Q Consensus 550 ~l~~H~~~I~sl~fSpd----g~~LaSgs~Dg~I~VWdl~t~~~~~tl~~-----h~~~V~sl~fspd----g~~LaTgs 616 (768)
...+|.++|++++|+|+ ...+++++.++.|+|||+.+++.+..+.. |...|++++|+|+ +.+|++|+
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~ 92 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG 92 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence 34589999999999984 44666667777999999998877666643 5578999999998 67999999
Q ss_pred CCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEE----ecCCCeeEEEEec
Q 004207 617 ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF----KCQSGATQMRFQP 692 (768)
Q Consensus 617 ~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~----~~~~~i~sl~fsp 692 (768)
.||+|+|||+.+++. +..+.+|...|.+++|+|++..+|++|+.||.|++||+++++.+..+ .+...|.+++|+|
T Consensus 93 ~dg~i~v~d~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 171 (366)
T 3k26_A 93 SRGIIRIINPITMQC-IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDL 171 (366)
T ss_dssp TTCEEEEECTTTCCE-EEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECT
T ss_pred CCCEEEEEEchhceE-eeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECC
Confidence 999999999998775 77888999999999999944457789999999999999999999887 3567899999999
Q ss_pred CCCEEEEEEcCCeEEEEECCCceEee---------------------------------------------------ecc
Q 004207 693 RLGRILAAAIENYISILDVETQVCRL---------------------------------------------------KLQ 721 (768)
Q Consensus 693 ~~~~llags~Dg~I~IwD~~t~~~~~---------------------------------------------------~~~ 721 (768)
++.+|++++.|+.|++||+++..... ...
T Consensus 172 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~ 251 (366)
T 3k26_A 172 LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCEN 251 (366)
T ss_dssp TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEETTEEEEECSSS
T ss_pred CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEcCCEEEEEecCC
Confidence 99999999999999999998653221 122
Q ss_pred eeEEeecCCCc---------------eEEeccCCCCeeEEEEeCC--CCEEEEEECCCcEEEeC
Q 004207 722 TLELWNMTENK---------------TLTLSAHDKLVSSLAASTV--NGMVASASHDKCVKIWK 768 (768)
Q Consensus 722 ~I~iwd~~~~~---------------~~~l~~H~~~I~sla~spd--g~~LaSgs~DG~V~IWD 768 (768)
.|++||+.... ...+..|...|++++|+|+ +.+|++++.||.|+|||
T Consensus 252 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd 315 (366)
T 3k26_A 252 AIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWD 315 (366)
T ss_dssp EEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEE
T ss_pred EEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEE
Confidence 78999987753 3356789999999999999 99999999999999996
No 87
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.95 E-value=2.3e-25 Score=237.40 Aligned_cols=207 Identities=18% Similarity=0.321 Sum_probs=175.3
Q ss_pred eeeEEEEecCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCC-----eEEEEeccCCCCEEEEEEcCCCCEEEEEeC
Q 004207 544 TFTEFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTESF-----TVKSTLEEHTQWITDVRFSPSLSRLATSSA 617 (768)
Q Consensus 544 ~~~~~~~l~~H~~~I~sl~fSpd-g~~LaSgs~Dg~I~VWdl~t~-----~~~~tl~~h~~~V~sl~fspdg~~LaTgs~ 617 (768)
.+....++++|.+.|+||+|+|+ +++||||+.|++|+|||+.+. .+..++.+|...|.+++|+|++++|++++.
T Consensus 27 ~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~ 106 (340)
T 4aow_A 27 QMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSW 106 (340)
T ss_dssp EEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred ceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcc
Confidence 34556678999999999999997 689999999999999998764 356788999999999999999999999999
Q ss_pred CCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEe--cCCCeeEEEEecCC-
Q 004207 618 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSGATQMRFQPRL- 694 (768)
Q Consensus 618 DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~--~~~~i~sl~fsp~~- 694 (768)
|+.|++|+...... ......+...+..+.+++++. +|++++.|+.+++||+.......... +...+..++|+++.
T Consensus 107 d~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 184 (340)
T 4aow_A 107 DGTLRLWDLTTGTT-TRRFVGHTKDVLSVAFSSDNR-QIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSS 184 (340)
T ss_dssp TSEEEEEETTTTEE-EEEEECCSSCEEEEEECTTSS-CEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSS
T ss_pred cccceEEeecccce-eeeecCCCCceeEEEEeecCc-cceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCC
Confidence 99999999987664 666667888899999999876 56689999999999998665443322 25668889998764
Q ss_pred -CEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 695 -GRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 695 -~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
..+++++.|+.|++||+++..... .+.+|.+.|++++|+|++.+|++|+.||.|+|||
T Consensus 185 ~~~~~s~~~d~~i~i~d~~~~~~~~----------------~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd 243 (340)
T 4aow_A 185 NPIIVSCGWDKLVKVWNLANCKLKT----------------NHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWD 243 (340)
T ss_dssp SCEEEEEETTSCEEEEETTTTEEEE----------------EECCCSSCEEEEEECTTSSEEEEEETTCEEEEEE
T ss_pred CcEEEEEcCCCEEEEEECCCCceee----------------EecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 457788999999999998876533 3458999999999999999999999999999996
No 88
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.95 E-value=8.6e-26 Score=243.81 Aligned_cols=216 Identities=14% Similarity=0.187 Sum_probs=183.8
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe--EEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004207 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 628 (768)
Q Consensus 551 l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~--~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t 628 (768)
+..|.++|++++|+|++++|++++.|+.|+|||+.+++ .+..+.+|...|.+++|+|++++|++++.|++|++||+++
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 83 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG 83 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCC
Confidence 34689999999999999999999999999999999987 8888999999999999999999999999999999999987
Q ss_pred CCee-EEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCee---EEEEe--cCCCeeEEEEecCCCEEEEEEc
Q 004207 629 PDYS-LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC---AGVFK--CQSGATQMRFQPRLGRILAAAI 702 (768)
Q Consensus 629 ~~~~-~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~---i~~~~--~~~~i~sl~fsp~~~~llags~ 702 (768)
++.. ...+..|...|.+++|+|++. +|++++.|+.|++||++.+.. ...+. +...|.+++|+|++.++++++.
T Consensus 84 ~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 162 (372)
T 1k8k_C 84 RTWKPTLVILRINRAARCVRWAPNEK-KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSC 162 (372)
T ss_dssp TEEEEEEECCCCSSCEEEEEECTTSS-EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEET
T ss_pred CeeeeeEEeecCCCceeEEEECCCCC-EEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcC
Confidence 6532 334467899999999999976 666888999999999988763 33332 2567999999999999999999
Q ss_pred CCeEEEEECC------------------CceEeeecc-------------------------eeEEeecCCCceE-Eecc
Q 004207 703 ENYISILDVE------------------TQVCRLKLQ-------------------------TLELWNMTENKTL-TLSA 738 (768)
Q Consensus 703 Dg~I~IwD~~------------------t~~~~~~~~-------------------------~I~iwd~~~~~~~-~l~~ 738 (768)
|+.|++||++ .......+. .|++||+.+++.+ .+..
T Consensus 163 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 242 (372)
T 1k8k_C 163 DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLAS 242 (372)
T ss_dssp TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEEC
T ss_pred CCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEcc
Confidence 9999999953 333322221 7999999877655 6778
Q ss_pred CCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 739 HDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 739 H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
|...|.+++|+|++.+|+++ .||.|+|||
T Consensus 243 ~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~ 271 (372)
T 1k8k_C 243 ETLPLLAVTFITESSLVAAG-HDCFPVLFT 271 (372)
T ss_dssp SSCCEEEEEEEETTEEEEEE-TTSSCEEEE
T ss_pred CCCCeEEEEEecCCCEEEEE-eCCeEEEEE
Confidence 99999999999999988877 999999996
No 89
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.95 E-value=7.1e-25 Score=245.84 Aligned_cols=267 Identities=17% Similarity=0.220 Sum_probs=214.1
Q ss_pred cccCCCCCceEEEEecCCC--------CcccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCcee
Q 004207 474 LQHNGASSKSLLMFGSDGM--------GSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTF 545 (768)
Q Consensus 474 l~~s~s~~~~~l~~~~~~~--------~~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~ 545 (768)
....++.+..+.+|..... +...+....+.+.+ ++++|+.|++|++|+....
T Consensus 134 ~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~------------------- 193 (464)
T 3v7d_B 134 YVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKG------------------- 193 (464)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTT-------------------
T ss_pred EEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCC-------------------
Confidence 5566777888888876543 22233344444433 9999999999999965322
Q ss_pred eEEEEecCCCCCeEEEEEc--CCCCEEEEEeCCCcEEEEECCCCe-----------------------EEEEeccCCCCE
Q 004207 546 TEFQLIPASTSKVESCHFS--PDGKLLATGGHDKKAVLWCTESFT-----------------------VKSTLEEHTQWI 600 (768)
Q Consensus 546 ~~~~~l~~H~~~I~sl~fS--pdg~~LaSgs~Dg~I~VWdl~t~~-----------------------~~~tl~~h~~~V 600 (768)
..+..+.+|.+.|.+++|+ +++.+|++|+.|+.|++||+.+.. .+..+.+|...|
T Consensus 194 ~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 273 (464)
T 3v7d_B 194 CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASV 273 (464)
T ss_dssp EEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCE
T ss_pred cEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceE
Confidence 3456778999999999998 578899999999999999998765 255678899888
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEe
Q 004207 601 TDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 680 (768)
Q Consensus 601 ~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~ 680 (768)
.++ ++++.+|++++.|++|++||+++++. +..+.+|...|.+++|+|++. ++++|+.|+.|++||+++++++..+.
T Consensus 274 ~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~-~l~sg~~dg~i~vwd~~~~~~~~~~~ 349 (464)
T 3v7d_B 274 RTV--SGHGNIVVSGSYDNTLIVWDVAQMKC-LYILSGHTDRIYSTIYDHERK-RCISASMDTTIRIWDLENGELMYTLQ 349 (464)
T ss_dssp EEE--EEETTEEEEEETTSCEEEEETTTTEE-EEEECCCSSCEEEEEEETTTT-EEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred EEE--cCCCCEEEEEeCCCeEEEEECCCCcE-EEEecCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCcEEEEEe
Confidence 887 45688999999999999999998664 788889999999999999977 56689999999999999999999887
Q ss_pred c-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecc-----------------------eeEEeecCCCceEE-
Q 004207 681 C-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ-----------------------TLELWNMTENKTLT- 735 (768)
Q Consensus 681 ~-~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~-----------------------~I~iwd~~~~~~~~- 735 (768)
. ...|.+++|++ .++++++.|+.|++||+.+........ .|++||+.+++.+.
T Consensus 350 ~h~~~v~~~~~~~--~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~dg~i~iwd~~~g~~~~~ 427 (464)
T 3v7d_B 350 GHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHA 427 (464)
T ss_dssp CCSSCEEEEEECS--SEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEETTEEEEEETTTCCEEES
T ss_pred CCCCcEEEEEEcC--CEEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEecCCeEEEEECCCCcEEeh
Confidence 5 56688899984 699999999999999998765433321 89999999998875
Q ss_pred -eccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 004207 736 -LSAHDKLVSSLAASTVNGMVASASHDKCVKIW 767 (768)
Q Consensus 736 -l~~H~~~I~sla~spdg~~LaSgs~DG~V~IW 767 (768)
+..|...|.+++|+ ...++++++.||.+.+|
T Consensus 428 ~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~ 459 (464)
T 3v7d_B 428 NILKDADQIWSVNFK-GKTLVAAVEKDGQSFLE 459 (464)
T ss_dssp CTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEE
T ss_pred hhccCCCcEEEEEec-CCEEEEEEEeCCeEEEE
Confidence 56889999999998 34556666677766654
No 90
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.95 E-value=8e-27 Score=261.29 Aligned_cols=203 Identities=15% Similarity=0.167 Sum_probs=165.5
Q ss_pred EecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeE--EEEeccCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEE
Q 004207 550 LIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTV--KSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWD 625 (768)
Q Consensus 550 ~l~~H~~~I~sl~fSp-dg~~LaSgs~Dg~I~VWdl~t~~~--~~tl~~h~~~V~sl~fsp-dg~~LaTgs~DgtIrVWD 625 (768)
...+|...|+||+|+| ++.+||+|+.||.|+|||+.+++. ...+.+|.+.|++|+|+| ++.+|++|+.||+|+|||
T Consensus 114 ~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd 193 (435)
T 4e54_B 114 KAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQD 193 (435)
T ss_dssp EEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEE
T ss_pred cCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEee
Confidence 4457889999999999 567999999999999999987654 345568999999999998 688999999999999999
Q ss_pred CCCCCeeEEEee--cCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEe-cCCCeeEEEEecCCC-EEEEEE
Q 004207 626 TENPDYSLRTFT--GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLG-RILAAA 701 (768)
Q Consensus 626 l~t~~~~~~~~~--~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~-~~~~i~sl~fsp~~~-~llags 701 (768)
+++... ..... .+...+.+++|+|++. +|++|+.||.|++||++. +.+..+. +...|.+++|+|++. ++++++
T Consensus 194 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s 270 (435)
T 4e54_B 194 FKGNIL-RVFASSDTINIWFCSLDVSASSR-MVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCDWFLATAS 270 (435)
T ss_dssp TTSCEE-EEEECCSSCSCCCCCEEEETTTT-EEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTCSSEEEEEE
T ss_pred ccCCce-eEEeccCCCCccEEEEEECCCCC-EEEEEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCCceEEEEec
Confidence 986442 22222 2345678999999976 677999999999999975 4444444 356799999999887 566788
Q ss_pred cCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 702 IENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 702 ~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
.|+.|+|||+++...... .....+|...|++++|+|++.+|++++.||.|+|||
T Consensus 271 ~d~~v~iwd~~~~~~~~~-------------~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd 324 (435)
T 4e54_B 271 VDQTVKIWDLRQVRGKAS-------------FLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYS 324 (435)
T ss_dssp TTSBCCEEETTTCCSSSC-------------CSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEE
T ss_pred CcceeeEEecccccccce-------------EEEeeeccccccceeECCCCCeeEEEcCCCEEEEEE
Confidence 999999999987543221 123347999999999999999999999999999996
No 91
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2e-26 Score=256.43 Aligned_cols=256 Identities=11% Similarity=0.145 Sum_probs=192.6
Q ss_pred cccCccccC-CCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEe
Q 004207 496 TSAPNQLTD-MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG 574 (768)
Q Consensus 496 ~~~~~~l~~-~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs 574 (768)
.+....+.+ .+.++++|+.|++|++|....... +..+.....+ .|.+.|++++|+|++.+|++|+
T Consensus 65 ~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~-------------~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s 130 (437)
T 3gre_A 65 SITSSAVSPGETPYLITGSDQGVIKIWNLKEIIV-------------GEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSS 130 (437)
T ss_dssp CEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHT-------------TCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEE
T ss_pred ceEEEEECCCCCCEEEEecCCceEEEeECccccc-------------Ccccceeeec-cCCCCEEEEEEeCCCCEEEEEe
Confidence 444455556 678999999999999996533100 1011111222 5899999999999999999999
Q ss_pred CCCcEEEEECC---CCeEEEEecc------------CCCCEEEEE--EcCCCCEEEEEeCCCcEEEEECCCCCeeEEEee
Q 004207 575 HDKKAVLWCTE---SFTVKSTLEE------------HTQWITDVR--FSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 637 (768)
Q Consensus 575 ~Dg~I~VWdl~---t~~~~~tl~~------------h~~~V~sl~--fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~ 637 (768)
.||.|+|||++ +++.+..+.. +...+.++. +++++.+|++++.|++|++||+++++. +..+.
T Consensus 131 ~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~ 209 (437)
T 3gre_A 131 KDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLER-LQIIE 209 (437)
T ss_dssp TTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCE-EEEEE
T ss_pred CCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCee-eEEEc
Confidence 99999999984 4444433322 455677777 567899999999999999999998775 67777
Q ss_pred c--CCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEe--cCCCeeEEEEec----CCCEEEEEEcCCeEEEE
Q 004207 638 G--HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSGATQMRFQP----RLGRILAAAIENYISIL 709 (768)
Q Consensus 638 ~--h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~--~~~~i~sl~fsp----~~~~llags~Dg~I~Iw 709 (768)
+ |...|++++|+|++. +|++|+.||.|++||+++++++..+. +...|.+++|+| ++.+|++++.|+.|++|
T Consensus 210 ~~~h~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iw 288 (437)
T 3gre_A 210 NSPRHGAVSSICIDEECC-VLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIW 288 (437)
T ss_dssp CCGGGCCEEEEEECTTSC-EEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEE
T ss_pred cCCCCCceEEEEECCCCC-EEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEE
Confidence 6 889999999999966 67799999999999999999998875 355689996665 56689999999999999
Q ss_pred ECCCceEeeeccee----E--EeecCCCc--eEEecc--CCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 710 DVETQVCRLKLQTL----E--LWNMTENK--TLTLSA--HDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 710 D~~t~~~~~~~~~I----~--iwd~~~~~--~~~l~~--H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
|++++.+...+... . .|...... ...+.+ |...|++++|+ ++.+|++|+.||.|+|||
T Consensus 289 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd 356 (437)
T 3gre_A 289 NFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFS 356 (437)
T ss_dssp ETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEE
T ss_pred EcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEE
Confidence 99988765443200 0 01100000 002233 88899999999 778999999999999997
No 92
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.95 E-value=5e-25 Score=231.62 Aligned_cols=218 Identities=16% Similarity=0.248 Sum_probs=187.3
Q ss_pred eeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q 004207 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 623 (768)
Q Consensus 544 ~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrV 623 (768)
.+.....+.+|.+.|++++| +++.+|++++.||.|+|||+.+++....+..|...|.+++|+|++.+|++++.|+.|++
T Consensus 7 ~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 85 (313)
T 3odt_A 7 GYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMING 85 (313)
T ss_dssp CCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred cHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEE
Confidence 34667888999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCCC--eeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEec-CCCEEEE
Q 004207 624 WDTENPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQP-RLGRILA 699 (768)
Q Consensus 624 WDl~t~~--~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp-~~~~lla 699 (768)
|++.... ..+..+.+|...|.+++|+ +. ++++++.|+.|++|| .+..+..+.. ...+.+++|.| ++.++++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~-~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 160 (313)
T 3odt_A 86 VPLFATSGEDPLYTLIGHQGNVCSLSFQ--DG-VVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLT 160 (313)
T ss_dssp EETTCCTTSCC-CEECCCSSCEEEEEEE--TT-EEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEE
T ss_pred EEeeecCCCCcccchhhcccCEEEEEec--CC-EEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEE
Confidence 9997643 3467788899999999995 33 777999999999999 5666666664 66789999988 8899999
Q ss_pred EEcCCeEEEEECCCceEeeec-----------------------ceeEEeecCCCceE-EeccCCCCeeEEEEeCCCCEE
Q 004207 700 AAIENYISILDVETQVCRLKL-----------------------QTLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMV 755 (768)
Q Consensus 700 gs~Dg~I~IwD~~t~~~~~~~-----------------------~~I~iwd~~~~~~~-~l~~H~~~I~sla~spdg~~L 755 (768)
++.|+.|++||.......... ..|++||+.+++.+ .+..|...|++++|+|++ .|
T Consensus 161 ~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l 239 (313)
T 3odt_A 161 ASADKTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DI 239 (313)
T ss_dssp EETTSCEEEEETTEEEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CE
T ss_pred EECCCCEEEEecCceEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CE
Confidence 999999999996543222211 17999999887765 567899999999999999 68
Q ss_pred EEEECCCcEEEeC
Q 004207 756 ASASHDKCVKIWK 768 (768)
Q Consensus 756 aSgs~DG~V~IWD 768 (768)
++++.||.|+|||
T Consensus 240 ~~~~~dg~v~iwd 252 (313)
T 3odt_A 240 VSCGEDRTVRIWS 252 (313)
T ss_dssp EEEETTSEEEEEC
T ss_pred EEEecCCEEEEEE
Confidence 9999999999997
No 93
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.94 E-value=1.7e-25 Score=281.68 Aligned_cols=275 Identities=22% Similarity=0.324 Sum_probs=227.4
Q ss_pred cccCCCCCceEEEEecCCC--------CcccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCcee
Q 004207 474 LQHNGASSKSLLMFGSDGM--------GSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTF 545 (768)
Q Consensus 474 l~~s~s~~~~~l~~~~~~~--------~~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~ 545 (768)
+..+++.+..+.+|..... +...+....+.+.+.++++|+.|+.|++|+...+
T Consensus 629 ~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~------------------- 689 (1249)
T 3sfz_A 629 RIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATG------------------- 689 (1249)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC-------------------
T ss_pred EEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCC-------------------
Confidence 4455667778888876543 2334456677888999999999999999965432
Q ss_pred eEEEEecCCCCCeEEEEEcC--CCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q 004207 546 TEFQLIPASTSKVESCHFSP--DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 623 (768)
Q Consensus 546 ~~~~~l~~H~~~I~sl~fSp--dg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrV 623 (768)
..+..+.+|...|.+++|+| ++.++++|+.|+.|++||+.+++++.++.+|...|++++|+|++++|++++.||+|++
T Consensus 690 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~v 769 (1249)
T 3sfz_A 690 KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRL 769 (1249)
T ss_dssp CEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEE
T ss_pred ceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEE
Confidence 24566789999999999999 5568999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCCCeeE------------------------------------------------------EEeecCCCCeEEEEEe
Q 004207 624 WDTENPDYSL------------------------------------------------------RTFTGHSTTVMSLDFH 649 (768)
Q Consensus 624 WDl~t~~~~~------------------------------------------------------~~~~~h~~~V~slafs 649 (768)
||+.++.... ....+|...|.+++|+
T Consensus 770 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~s 849 (1249)
T 3sfz_A 770 WDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFS 849 (1249)
T ss_dssp EEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEEC
T ss_pred EeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEc
Confidence 9987543210 1122688899999999
Q ss_pred CCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceE------------
Q 004207 650 PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVC------------ 716 (768)
Q Consensus 650 p~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~------------ 716 (768)
|++. ++++++.|+.|++||+.++..+..+.. ...|.+++|+|++.++++++.|+.|++||+.+...
T Consensus 850 p~~~-~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~ 928 (1249)
T 3sfz_A 850 PYDH-LAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDV 928 (1249)
T ss_dssp SSTT-EEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEE
T ss_pred CCCC-EEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeE
Confidence 9977 666888999999999999999888875 45699999999999999999999999999653100
Q ss_pred --------------------------------------------------eeecceeEEeecCCCceE-EeccCCCCeeE
Q 004207 717 --------------------------------------------------RLKLQTLELWNMTENKTL-TLSAHDKLVSS 745 (768)
Q Consensus 717 --------------------------------------------------~~~~~~I~iwd~~~~~~~-~l~~H~~~I~s 745 (768)
......+.+|++.++... .+.+|...|++
T Consensus 929 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~ 1008 (1249)
T 3sfz_A 929 VFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRH 1008 (1249)
T ss_dssp EEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCC
T ss_pred EEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEE
Confidence 001126889998887665 56689999999
Q ss_pred EEEeCCCCEEEEEECCCcEEEeC
Q 004207 746 LAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 746 la~spdg~~LaSgs~DG~V~IWD 768 (768)
++|+|++.+|++++.||.|++||
T Consensus 1009 l~~s~dg~~l~s~~~dg~i~vwd 1031 (1249)
T 3sfz_A 1009 IQFTADGKTLISSSEDSVIQVWN 1031 (1249)
T ss_dssp EEECSSSSCEEEECSSSBEEEEE
T ss_pred EEECCCCCEEEEEcCCCEEEEEE
Confidence 99999999999999999999996
No 94
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.94 E-value=1.9e-25 Score=248.08 Aligned_cols=267 Identities=13% Similarity=0.171 Sum_probs=189.0
Q ss_pred ccCccccCCC--CEEEeecCCCcEEEeecCCCCCC------CCccc------cc--------cccCCCceeeEEEE-ecC
Q 004207 497 SAPNQLTDMD--RFVDDGSLDDNVESFLSPDDADP------RDRVG------RS--------AEVGKGFTFTEFQL-IPA 553 (768)
Q Consensus 497 ~~~~~l~~~~--~~latGS~D~~v~~w~~~~~~d~------~~~~~------~~--------~~~~~~~~~~~~~~-l~~ 553 (768)
+....+.+.+ ..+++++.|++|++|........ ....+ .. .............. ..+
T Consensus 96 V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (447)
T 3dw8_B 96 INKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANA 175 (447)
T ss_dssp CCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSC
T ss_pred eEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccC
Confidence 4445555665 78999999999999965432100 00000 00 00000001112223 478
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-CeEEE-------EeccCCCCEEEEEEcCCC-CEEEEEeCCCcEEEE
Q 004207 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTES-FTVKS-------TLEEHTQWITDVRFSPSL-SRLATSSADRTVRVW 624 (768)
Q Consensus 554 H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t-~~~~~-------tl~~h~~~V~sl~fspdg-~~LaTgs~DgtIrVW 624 (768)
|...|++++|+|++++|++| .|+.|+|||+.+ .+.+. .+.+|...|++++|+|++ .+|++|+.||+|++|
T Consensus 176 h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iw 254 (447)
T 3dw8_B 176 HTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLC 254 (447)
T ss_dssp CSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEE
T ss_pred CCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEE
Confidence 99999999999999999998 799999999984 44444 256899999999999998 999999999999999
Q ss_pred ECCCCCee---EEEeecCCC------------CeEEEEEeCCCCeEEEEEeCCCcEEEEECCC-CeeEEEEecCCCe---
Q 004207 625 DTENPDYS---LRTFTGHST------------TVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKCQSGA--- 685 (768)
Q Consensus 625 Dl~t~~~~---~~~~~~h~~------------~V~slafsp~g~~lLaSgs~Dg~I~iWDl~s-g~~i~~~~~~~~i--- 685 (768)
|++++... +..+.+|.. .|.+++|+|++. +|++++. +.|++||+++ ++++..+..+..+
T Consensus 255 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~ 332 (447)
T 3dw8_B 255 DMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGR-YMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSK 332 (447)
T ss_dssp ETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSS-EEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTT
T ss_pred ECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCC-EEEEeeC-CeEEEEeCCCCccccceeecccccccc
Confidence 99987642 467777775 899999999987 5557777 9999999997 8888888765432
Q ss_pred -------------eEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecc--------------eeEEeecCCCceE--Ee
Q 004207 686 -------------TQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ--------------TLELWNMTENKTL--TL 736 (768)
Q Consensus 686 -------------~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~--------------~I~iwd~~~~~~~--~l 736 (768)
..++|+|++.+|++++.|+.|++||+.++....... .+..-........ ..
T Consensus 333 l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (447)
T 3dw8_B 333 LCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDS 412 (447)
T ss_dssp HHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGG
T ss_pred ccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccc
Confidence 339999999999999999999999999876542110 0000000000000 11
Q ss_pred ccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 004207 737 SAHDKLVSSLAASTVNGMVASASHDKCVKIW 767 (768)
Q Consensus 737 ~~H~~~I~sla~spdg~~LaSgs~DG~V~IW 767 (768)
..+...|.+++|+|++.+||+++.|+ ++||
T Consensus 413 ~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~ 442 (447)
T 3dw8_B 413 LDFNKKILHTAWHPKENIIAVATTNN-LYIF 442 (447)
T ss_dssp CCTTSCCCEEEECSSSSEEEEECSSC-EEEE
T ss_pred cccCCceeEEEECCCCCEEEEEecce-eeee
Confidence 24566799999999999999998886 5565
No 95
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.94 E-value=2.8e-25 Score=242.79 Aligned_cols=208 Identities=15% Similarity=0.250 Sum_probs=176.7
Q ss_pred eeeEEEEecCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCeEEEEec--cCCCCEEEEEEcC-CCCEEEEEeCCC
Q 004207 544 TFTEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTESFTVKSTLE--EHTQWITDVRFSP-SLSRLATSSADR 619 (768)
Q Consensus 544 ~~~~~~~l~~H~~~I~sl~fSpdg-~~LaSgs~Dg~I~VWdl~t~~~~~tl~--~h~~~V~sl~fsp-dg~~LaTgs~Dg 619 (768)
.+..+..+.+|.+.|++++|+|++ ++|++|+.||.|+|||+.+++....+. +|...|.+++|+| ++.+|++++.|+
T Consensus 62 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~ 141 (383)
T 3ei3_B 62 SYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRG 141 (383)
T ss_dssp TCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTT
T ss_pred ccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCC
Confidence 345677889999999999999999 899999999999999999888777765 6999999999999 689999999999
Q ss_pred cEEEEECCCCCeeEEEeec---CCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEe-cCCCeeEEEEecCCC
Q 004207 620 TVRVWDTENPDYSLRTFTG---HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLG 695 (768)
Q Consensus 620 tIrVWDl~t~~~~~~~~~~---h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~-~~~~i~sl~fsp~~~ 695 (768)
+|++||+++ . .+..+.. |...|.+++|+|++. +|++|+.|+.|++||++ ++++..+. +...|.+++|+|++.
T Consensus 142 ~i~iwd~~~-~-~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~-~~~~~~~~~h~~~v~~~~~~~~~~ 217 (383)
T 3ei3_B 142 ATTLRDFSG-S-VIQVFAKTDSWDYWYCCVDVSVSRQ-MLATGDSTGRLLLLGLD-GHEIFKEKLHKAKVTHAEFNPRCD 217 (383)
T ss_dssp EEEEEETTS-C-EEEEEECCCCSSCCEEEEEEETTTT-EEEEEETTSEEEEEETT-SCEEEEEECSSSCEEEEEECSSCT
T ss_pred EEEEEECCC-C-ceEEEeccCCCCCCeEEEEECCCCC-EEEEECCCCCEEEEECC-CCEEEEeccCCCcEEEEEECCCCC
Confidence 999999986 3 2445544 347899999999977 66799999999999995 66666666 467799999999998
Q ss_pred -EEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeC-CCCEEEEEECCCcEEEeC
Q 004207 696 -RILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAAST-VNGMVASASHDKCVKIWK 768 (768)
Q Consensus 696 -~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~sp-dg~~LaSgs~DG~V~IWD 768 (768)
.+++++.|+.|++||+++.... +......+|...|++++|+| ++.+|++++.||.|+|||
T Consensus 218 ~~l~s~~~d~~i~iwd~~~~~~~-------------~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd 279 (383)
T 3ei3_B 218 WLMATSSVDATVKLWDLRNIKDK-------------NSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYS 279 (383)
T ss_dssp TEEEEEETTSEEEEEEGGGCCST-------------TCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEE
T ss_pred CEEEEEeCCCEEEEEeCCCCCcc-------------cceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEE
Confidence 8999999999999999873211 12222336899999999999 999999999999999996
No 96
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.94 E-value=3.3e-25 Score=255.82 Aligned_cols=236 Identities=14% Similarity=0.184 Sum_probs=201.3
Q ss_pred ccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCC-eEEEEEcC--CCCEEEEE
Q 004207 497 SAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK-VESCHFSP--DGKLLATG 573 (768)
Q Consensus 497 ~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~-I~sl~fSp--dg~~LaSg 573 (768)
+....+.+.++++++++ |+.|++|...... ........+.+|.+. |++++|+| ++++|+++
T Consensus 21 v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~---------------~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~ 84 (615)
T 1pgu_A 21 TTHLSYDPTTNAIAYPC-GKSAFVRCLDDGD---------------SKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSG 84 (615)
T ss_dssp CCCCEEETTTTEEEEEE-TTEEEEEECCSSC---------------CSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEE
T ss_pred eeEEEECCCCCEEEEec-CCeEEEEECCCCC---------------CccccceEEecCCCceEEEEEECcCCCCCEEEEe
Confidence 34455566778889888 8899999654321 011245677899999 99999999 99999999
Q ss_pred eCCCcEEEEECCCC--------eEEEEeccCCCCEEEEEEcCCCCEEEEEeCC----CcEEEEECCCCCeeEEEeecCCC
Q 004207 574 GHDKKAVLWCTESF--------TVKSTLEEHTQWITDVRFSPSLSRLATSSAD----RTVRVWDTENPDYSLRTFTGHST 641 (768)
Q Consensus 574 s~Dg~I~VWdl~t~--------~~~~tl~~h~~~V~sl~fspdg~~LaTgs~D----gtIrVWDl~t~~~~~~~~~~h~~ 641 (768)
+.||.|+|||+.++ +.+..+..|...|.+++|+|++++|++++.+ +.|++||. ++ .+..+.+|..
T Consensus 85 ~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~--~~-~~~~~~~~~~ 161 (615)
T 1pgu_A 85 DESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDS--GN-SLGEVSGHSQ 161 (615)
T ss_dssp ETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTT--CC-EEEECCSCSS
T ss_pred cCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEEC--CC-cceeeecCCc
Confidence 99999999999754 6777888899999999999999999999988 68888883 33 4788889999
Q ss_pred CeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecC-C---CeeEEEEecC-CCEEEEEEcCCeEEEEECCCceE
Q 004207 642 TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-S---GATQMRFQPR-LGRILAAAIENYISILDVETQVC 716 (768)
Q Consensus 642 ~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~-~---~i~sl~fsp~-~~~llags~Dg~I~IwD~~t~~~ 716 (768)
.|.+++|+|++..++++++.|+.|++||+++++++..+..+ . .|.+++|+|+ +.++++++.|+.|++||+.++..
T Consensus 162 ~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 241 (615)
T 1pgu_A 162 RINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEF 241 (615)
T ss_dssp CEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCE
T ss_pred cEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCE
Confidence 99999999998878889999999999999999999988854 4 6999999999 99999999999999999987655
Q ss_pred eeecceeEEeecCCCceEEe-c---cCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 717 RLKLQTLELWNMTENKTLTL-S---AHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 717 ~~~~~~I~iwd~~~~~~~~l-~---~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
.. .+ . .|...|.+++|+ ++.+|++++.||.|++||
T Consensus 242 ~~----------------~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd 280 (615)
T 1pgu_A 242 LK----------------YIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWD 280 (615)
T ss_dssp EE----------------ECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEE
T ss_pred eE----------------EecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEE
Confidence 32 22 2 788999999999 999999999999999996
No 97
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.94 E-value=1.8e-26 Score=255.59 Aligned_cols=232 Identities=10% Similarity=0.063 Sum_probs=170.4
Q ss_pred ccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcC--------CCCEEEEE
Q 004207 502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--------DGKLLATG 573 (768)
Q Consensus 502 l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSp--------dg~~LaSg 573 (768)
......++++|+.|++|++|+..... ......+..+.+|.+.|.+|+|+| |+++||+|
T Consensus 97 ~~~~~~~las~~~d~~v~lw~~~~~~--------------~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~ 162 (393)
T 4gq1_A 97 SPVYSLFLACVCQDNTVRLIITKNET--------------IITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASV 162 (393)
T ss_dssp CCEEEEEEEEEETTSCEEEEEEETTE--------------EEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEE
T ss_pred cCCCCCEEEEEeCCCcEEEEECCCCc--------------cceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEE
Confidence 34456789999999999999654321 122234556789999999999998 88999999
Q ss_pred eCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCCeeE-------------------
Q 004207 574 GHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSL------------------- 633 (768)
Q Consensus 574 s~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg-~~LaTgs~DgtIrVWDl~t~~~~~------------------- 633 (768)
+.|++|+|||+.++..+..+..|...|.+++|+|++ .+|++++.|++|++||++++....
T Consensus 163 s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~ 242 (393)
T 4gq1_A 163 GDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTL 242 (393)
T ss_dssp ETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESG
T ss_pred ECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccc
Confidence 999999999999888888888899999999999986 589999999999999998765321
Q ss_pred -----EEeecCCCCeEEEEEe-CCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-------------------CCCeeEE
Q 004207 634 -----RTFTGHSTTVMSLDFH-PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-------------------QSGATQM 688 (768)
Q Consensus 634 -----~~~~~h~~~V~slafs-p~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-------------------~~~i~sl 688 (768)
....+|...|.++.|. +++. .+++++.|+.|++||+..+.....+.. ......+
T Consensus 243 ~~~~~~~~~~~~~~v~~v~~~~~dg~-~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (393)
T 4gq1_A 243 PLVNTCHSSGIASSLANVRWIGSDGS-GILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGA 321 (393)
T ss_dssp GGC------CCSSSCSEEEEETTTTC-EEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCC
T ss_pred cceeeeecccccccceeeeeecCCCC-EEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeE
Confidence 1224678889999997 5655 666999999999999987665444321 1112223
Q ss_pred EEec-CCCE-EEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcE
Q 004207 689 RFQP-RLGR-ILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCV 764 (768)
Q Consensus 689 ~fsp-~~~~-llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V 764 (768)
.|+| .++. +++++.|+.|++||+.++.... .+..|...|.+|+|+|+|++||+++.||.+
T Consensus 322 ~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~----------------~~~~~~~~V~svafspdG~~LA~as~~Gv~ 383 (393)
T 4gq1_A 322 CPHPRYMDYFATAHSQHGLIQLINTYEKDSNS----------------IPIQLGMPIVDFCWHQDGSHLAIATEGSVL 383 (393)
T ss_dssp EECSSCTTEEEEEETTTTEEEEEETTCTTCCE----------------EEEECSSCEEEEEECTTSSEEEEEESSEEE
T ss_pred EEccCCCCEEEEEECCCCEEEEEECCCCcEEE----------------EecCCCCcEEEEEEcCCCCEEEEEeCCCeE
Confidence 4444 3344 4455679999999988765422 334688899999999999999999988864
No 98
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.94 E-value=5.4e-25 Score=240.88 Aligned_cols=214 Identities=16% Similarity=0.227 Sum_probs=178.0
Q ss_pred cCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEC----CCCe------EEEEecc----------CCCCEEEEEEcCCCC
Q 004207 552 PASTSKVESCHFSPDGK-LLATGGHDKKAVLWCT----ESFT------VKSTLEE----------HTQWITDVRFSPSLS 610 (768)
Q Consensus 552 ~~H~~~I~sl~fSpdg~-~LaSgs~Dg~I~VWdl----~t~~------~~~tl~~----------h~~~V~sl~fspdg~ 610 (768)
..|.+.|++++|+|++. +||+|+.||.|+|||+ .+++ ....+.. |...|++++|+|+++
T Consensus 42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 121 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN 121 (425)
T ss_dssp EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS
T ss_pred eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC
Confidence 45678999999999999 9999999999999999 8887 4555544 677999999999999
Q ss_pred EEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEe----------
Q 004207 611 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---------- 680 (768)
Q Consensus 611 ~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~---------- 680 (768)
+|++++.||.|++||. ++. .+..+.+|...|.+++|+|++. +|++++.|+.|++||+++++.+..+.
T Consensus 122 ~l~~~~~dg~i~i~~~-~~~-~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 198 (425)
T 1r5m_A 122 SIVTGVENGELRLWNK-TGA-LLNVLNFHRAPIVSVKWNKDGT-HIISMDVENVTILWNVISGTVMQHFELKETGGSSIN 198 (425)
T ss_dssp EEEEEETTSCEEEEET-TSC-EEEEECCCCSCEEEEEECTTSS-EEEEEETTCCEEEEETTTTEEEEEECCC--------
T ss_pred EEEEEeCCCeEEEEeC-CCC-eeeeccCCCccEEEEEECCCCC-EEEEEecCCeEEEEECCCCcEEEEeeccccCcccee
Confidence 9999999999999993 334 4778889999999999999977 55688889999999998876654332
Q ss_pred -----------------------------------------------cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCC
Q 004207 681 -----------------------------------------------CQSGATQMRFQPRLGRILAAAIENYISILDVET 713 (768)
Q Consensus 681 -----------------------------------------------~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t 713 (768)
+...|.+++|+|++.+|++++.|+.|++||+++
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 278 (425)
T 1r5m_A 199 AENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGN 278 (425)
T ss_dssp -------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSS
T ss_pred eccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC
Confidence 134578899999999999999999999999987
Q ss_pred ceEeeecc------------------------eeEEeecCCCceE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 714 QVCRLKLQ------------------------TLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 714 ~~~~~~~~------------------------~I~iwd~~~~~~~-~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
......+. .|++||+..++.. .+..|...|.+++|+|++.+|++++.||.|+|||
T Consensus 279 ~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~ 358 (425)
T 1r5m_A 279 GNSQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYD 358 (425)
T ss_dssp BSCSEEECCCSSCEEEEEEETTTEEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred CccceEecCCCccEEEEEECCCCEEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEE
Confidence 64333221 7899999887765 5668899999999999999999999999999996
No 99
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.94 E-value=1.6e-25 Score=244.62 Aligned_cols=221 Identities=14% Similarity=0.132 Sum_probs=187.0
Q ss_pred eeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe------EEEEeccCCCCEEEEEEcCC----C---CE
Q 004207 545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT------VKSTLEEHTQWITDVRFSPS----L---SR 611 (768)
Q Consensus 545 ~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~------~~~tl~~h~~~V~sl~fspd----g---~~ 611 (768)
......+.+|.+.|++|+|+| ++|++|+.||.|+|||+.+++ .+..+.+|...|++++|+|+ + .+
T Consensus 6 ~~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~ 83 (397)
T 1sq9_A 6 IATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCL 83 (397)
T ss_dssp EEEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEE
T ss_pred hhhhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccE
Confidence 345677889999999999998 899999999999999999887 78888899999999999999 9 99
Q ss_pred EEEEeCCCcEEEEECCCCCe----eEEEeecC-----CCCeEEEEEe----CCCCeEEEEEeCCCcEEEEECCC------
Q 004207 612 LATSSADRTVRVWDTENPDY----SLRTFTGH-----STTVMSLDFH----PSKEDLLCSCDNNSEIRYWSINN------ 672 (768)
Q Consensus 612 LaTgs~DgtIrVWDl~t~~~----~~~~~~~h-----~~~V~slafs----p~g~~lLaSgs~Dg~I~iWDl~s------ 672 (768)
|++++.|+.|++||++++.. .+..+..| ...|.+++|+ |++..+|++++.||.|++||+++
T Consensus 84 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 163 (397)
T 1sq9_A 84 VATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESN 163 (397)
T ss_dssp EEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHH
T ss_pred EEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccc
Confidence 99999999999999987653 15677778 5899999999 99875377899999999999998
Q ss_pred CeeEE-----EEe--------cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeee--------------------
Q 004207 673 GSCAG-----VFK--------CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK-------------------- 719 (768)
Q Consensus 673 g~~i~-----~~~--------~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~-------------------- 719 (768)
++.+. .+. +...+.+++|+|++ .+++++.|+.|++||+++......
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~ 242 (397)
T 1sq9_A 164 SLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFS 242 (397)
T ss_dssp HTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEEC
T ss_pred cceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEEC
Confidence 66655 554 36679999999999 999999999999999986543211
Q ss_pred -----------c---ceeEEeecCCCceE-Eecc-------------CCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 720 -----------L---QTLELWNMTENKTL-TLSA-------------HDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 720 -----------~---~~I~iwd~~~~~~~-~l~~-------------H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
. ..|++||+.+++.+ .+.. |...|.+++|+|++.+|++++.||.|+|||
T Consensus 243 ~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 319 (397)
T 1sq9_A 243 PQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWD 319 (397)
T ss_dssp SSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred CCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 1 25889998877655 5566 999999999999999999999999999996
No 100
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.94 E-value=1.6e-25 Score=239.83 Aligned_cols=219 Identities=14% Similarity=0.231 Sum_probs=178.9
Q ss_pred EEecCCCCCeEEEEEcCCCCEE-EEEeC---CCcEEEEECCCCeEEEEe-ccCCCCEEEEEEcCC---CCEEEEEeCCCc
Q 004207 549 QLIPASTSKVESCHFSPDGKLL-ATGGH---DKKAVLWCTESFTVKSTL-EEHTQWITDVRFSPS---LSRLATSSADRT 620 (768)
Q Consensus 549 ~~l~~H~~~I~sl~fSpdg~~L-aSgs~---Dg~I~VWdl~t~~~~~tl-~~h~~~V~sl~fspd---g~~LaTgs~Dgt 620 (768)
..+.+|...|++++|+|++..| ++++. |+.|+|||+.+++..... .+|...|.+++|+|+ +.+|++++.||.
T Consensus 12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~ 91 (357)
T 3i2n_A 12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGN 91 (357)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSC
T ss_pred hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCe
Confidence 3456899999999999999755 55655 899999999988776443 378999999999998 699999999999
Q ss_pred EEEEECCCCCeeEEEeecCCCCeEEEEE------eCCCCeEEEEEeCCCcEEEEECCCCe-eEEEEec-----CCCeeEE
Q 004207 621 VRVWDTENPDYSLRTFTGHSTTVMSLDF------HPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFKC-----QSGATQM 688 (768)
Q Consensus 621 IrVWDl~t~~~~~~~~~~h~~~V~slaf------sp~g~~lLaSgs~Dg~I~iWDl~sg~-~i~~~~~-----~~~i~sl 688 (768)
|++||++++...+..+.+|...|.+++| +|++. +|++++.|+.|++||++++. .+..+.. ...+.++
T Consensus 92 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~ 170 (357)
T 3i2n_A 92 LHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAP-EIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTV 170 (357)
T ss_dssp EEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCC-EEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEE
T ss_pred EEEEeCCCCCccEEEEEecccceEEEeeccccccCCCcc-EEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEE
Confidence 9999999887557888999999999966 56665 67799999999999999886 6666654 2268888
Q ss_pred E----EecCCCEEEEEEcCCeEEEEECCCceEeeec---------------------------ceeEEeecCCCceE---
Q 004207 689 R----FQPRLGRILAAAIENYISILDVETQVCRLKL---------------------------QTLELWNMTENKTL--- 734 (768)
Q Consensus 689 ~----fsp~~~~llags~Dg~I~IwD~~t~~~~~~~---------------------------~~I~iwd~~~~~~~--- 734 (768)
+ |+|++.++++++.|+.|++||+++....... ..|++||+..+...
T Consensus 171 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 250 (357)
T 3i2n_A 171 AFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGF 250 (357)
T ss_dssp EEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEE
T ss_pred EEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccce
Confidence 8 6789999999999999999999876542211 16888887765433
Q ss_pred ---EeccCCCCeeEEEEeCCCC-EEEEEECCCcEEEeC
Q 004207 735 ---TLSAHDKLVSSLAASTVNG-MVASASHDKCVKIWK 768 (768)
Q Consensus 735 ---~l~~H~~~I~sla~spdg~-~LaSgs~DG~V~IWD 768 (768)
.+.+|...|++++|+|++. +|++++.||.|+|||
T Consensus 251 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd 288 (357)
T 3i2n_A 251 ASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWK 288 (357)
T ss_dssp EEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEE
T ss_pred eeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEee
Confidence 2238999999999999998 899999999999996
No 101
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.2e-25 Score=243.32 Aligned_cols=226 Identities=12% Similarity=0.088 Sum_probs=175.4
Q ss_pred cCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 004207 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 582 (768)
Q Consensus 503 ~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VW 582 (768)
...+.++++|+.|++|++|+..... ....+. ...|.++.|+|+ +++++.|++|++|
T Consensus 45 ~~d~~~l~sg~~Dg~v~iwd~~~~~----------------~~~~~~-----~~~v~~~~~~~~---~~s~s~D~~i~~w 100 (343)
T 3lrv_A 45 YYDKWVCMCRCEDGALHFTQLKDSK----------------TITTIT-----TPNPRTGGEHPA---IISRGPCNRLLLL 100 (343)
T ss_dssp SEEEEEEEEEEETTEEEEEEESSSS----------------CEEEEE-----EECCCTTCCCCS---EEEECSTTEEEEE
T ss_pred cCCCCEEEEECCCCcEEEEECCCCc----------------EEEEEe-----cCCceeeeeCCc---eEEecCCCeEEEE
Confidence 3456789999999999999764331 111111 355778888887 9999999999999
Q ss_pred ECC---------CCeEEEEec-cCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCCeeEEEe-ecCCCCeEEEEEe
Q 004207 583 CTE---------SFTVKSTLE-EHTQWITDVRFSP--SLSRLATSSADRTVRVWDTENPDYSLRTF-TGHSTTVMSLDFH 649 (768)
Q Consensus 583 dl~---------t~~~~~tl~-~h~~~V~sl~fsp--dg~~LaTgs~DgtIrVWDl~t~~~~~~~~-~~h~~~V~slafs 649 (768)
+.. +++.+..+. .|...|.+++|+| ++++|++++.||+|++||+++++. +... ..|...|.+++|+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-~~~~~~~~~~~i~~~~~~ 179 (343)
T 3lrv_A 101 YPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQ-YIVHSAKSDVEYSSGVLH 179 (343)
T ss_dssp ETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCE-EEEECCCSSCCCCEEEEC
T ss_pred EccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcE-EEEEecCCCCceEEEEEC
Confidence 665 455444443 6778899999999 999999999999999999998876 4444 4456689999999
Q ss_pred CCCCeEEEEEeCCCcEEEEECCCCeeE-EEEec--CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEe
Q 004207 650 PSKEDLLCSCDNNSEIRYWSINNGSCA-GVFKC--QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELW 726 (768)
Q Consensus 650 p~g~~lLaSgs~Dg~I~iWDl~sg~~i-~~~~~--~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iw 726 (768)
|++. +|++|+.||.|++||+++++.+ ..+.. ...|.+++|+|++.+|++++ |+.|++||+++......+.
T Consensus 180 pdg~-~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~----- 252 (343)
T 3lrv_A 180 KDSL-LLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYP----- 252 (343)
T ss_dssp TTSC-EEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSC-----
T ss_pred CCCC-EEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeec-----
Confidence 9976 7779999999999999999877 66665 67899999999999999998 5599999998865433222
Q ss_pred ecCCCceEEeccCCCCe--eEEEEeCCCCEEEEEEC-CCcEEEeC
Q 004207 727 NMTENKTLTLSAHDKLV--SSLAASTVNGMVASASH-DKCVKIWK 768 (768)
Q Consensus 727 d~~~~~~~~l~~H~~~I--~sla~spdg~~LaSgs~-DG~V~IWD 768 (768)
.+..|...+ .+++|+|++.+|++++. |+.|+||+
T Consensus 253 --------~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~ 289 (343)
T 3lrv_A 253 --------TYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYK 289 (343)
T ss_dssp --------CCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred --------ccccccccccceEEEECCCCCEEEEecCCCCcEEEEE
Confidence 111233333 47999999999999998 99999994
No 102
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.94 E-value=1.7e-24 Score=259.61 Aligned_cols=272 Identities=20% Similarity=0.309 Sum_probs=214.7
Q ss_pred cCCCCCceEEEEecCCC--------CcccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeE
Q 004207 476 HNGASSKSLLMFGSDGM--------GSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTE 547 (768)
Q Consensus 476 ~s~s~~~~~l~~~~~~~--------~~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~ 547 (768)
..++.+..+.+|..... +...+....+.+.+.+|++|+.|+.|++|..... ..
T Consensus 29 a~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~-------------------~~ 89 (814)
T 3mkq_A 29 LTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG-------------------EK 89 (814)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTC-------------------CE
T ss_pred EEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCC-------------------cE
Confidence 33444556666664432 2233445566778889999999999999965432 23
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC-eEEEEeccCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEE
Q 004207 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWD 625 (768)
Q Consensus 548 ~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~-~~~~tl~~h~~~V~sl~fsp-dg~~LaTgs~DgtIrVWD 625 (768)
+..+.+|.+.|++++|+|++.+|++++.||.|++||+.++ .....+.+|...|.+++|+| ++.+|++++.||+|++||
T Consensus 90 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd 169 (814)
T 3mkq_A 90 VVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWS 169 (814)
T ss_dssp EEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEE
T ss_pred EEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence 5567789999999999999999999999999999999886 77788889999999999999 889999999999999999
Q ss_pred CCCCCeeEEEeecCCCCeEEEEEeC--CCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEEc
Q 004207 626 TENPDYSLRTFTGHSTTVMSLDFHP--SKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAI 702 (768)
Q Consensus 626 l~t~~~~~~~~~~h~~~V~slafsp--~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags~ 702 (768)
+.++.........+...|.+++|+| ++. ++++++.||.|++||+++++++..+.. ...|.+++|+|++.++++++.
T Consensus 170 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 248 (814)
T 3mkq_A 170 LGQSTPNFTLTTGQERGVNYVDYYPLPDKP-YMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSE 248 (814)
T ss_dssp TTCSSCSEEEECCCTTCCCEEEECCSTTCC-EEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEET
T ss_pred CCCCcceeEEecCCCCCEEEEEEEECCCCC-EEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeC
Confidence 9887764444555558999999999 765 677899999999999999999988874 567999999999999999999
Q ss_pred CCeEEEEECCCceEeeecc--------------------------eeEEeecCCCc----------eE------------
Q 004207 703 ENYISILDVETQVCRLKLQ--------------------------TLELWNMTENK----------TL------------ 734 (768)
Q Consensus 703 Dg~I~IwD~~t~~~~~~~~--------------------------~I~iwd~~~~~----------~~------------ 734 (768)
|+.|++||+.++.....+. .+.+|++.... .+
T Consensus 249 dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 328 (814)
T 3mkq_A 249 DGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDI 328 (814)
T ss_dssp TSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCE
T ss_pred CCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceee
Confidence 9999999998765433221 34445433211 11
Q ss_pred ----------------------EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 735 ----------------------TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 735 ----------------------~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
.+..|...|.+++|+|++.+|++++ ||.+.||+
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~ 383 (814)
T 3mkq_A 329 FTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYT 383 (814)
T ss_dssp EEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEE
T ss_pred eeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEE
Confidence 1123445688999999999999888 88999985
No 103
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.93 E-value=9e-24 Score=230.85 Aligned_cols=239 Identities=16% Similarity=0.155 Sum_probs=194.1
Q ss_pred CEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEECC
Q 004207 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLL-ATGGHDKKAVLWCTE 585 (768)
Q Consensus 507 ~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~L-aSgs~Dg~I~VWdl~ 585 (768)
.++++++.|+.|++|..... +.+..+..|. .+.+++|+|++++| ++++.|+.|++||+.
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~-------------------~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~ 62 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSN-------------------KVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTA 62 (391)
T ss_dssp EEEEEETTTTEEEEEETTTT-------------------EEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETT
T ss_pred EEEEEcCCCCEEEEEECCCC-------------------eEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECC
Confidence 46788999999999965322 2334455554 48999999999976 677789999999999
Q ss_pred CCeEEEEeccCCCCEEEEEEcCCCCEEEEE-eCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCc
Q 004207 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 664 (768)
Q Consensus 586 t~~~~~tl~~h~~~V~sl~fspdg~~LaTg-s~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~ 664 (768)
+++++..+..+. .|.+++|+|++++|+++ +.|++|++||+.+++. +..+.. ...+.+++|+|+++.++++++.|+.
T Consensus 63 ~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~-~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~ 139 (391)
T 1l0q_A 63 TNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTV-AGTVKT-GKSPLGLALSPDGKKLYVTNNGDKT 139 (391)
T ss_dssp TTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE-EEEEEC-SSSEEEEEECTTSSEEEEEETTTTE
T ss_pred CCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeE-EEEEeC-CCCcceEEECCCCCEEEEEeCCCCE
Confidence 999998887665 89999999999987554 4679999999998764 555554 4578999999999988789999999
Q ss_pred EEEEECCCCeeEEEEecCCCeeEEEEecCCCEEE-EEEcCCeEEEEECCCceEeeec-----------------------
Q 004207 665 IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRIL-AAAIENYISILDVETQVCRLKL----------------------- 720 (768)
Q Consensus 665 I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~ll-ags~Dg~I~IwD~~t~~~~~~~----------------------- 720 (768)
|++||+++++++..+..+..+..++|+|++.+++ +++.++.|++||+++......+
T Consensus 140 v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~ 219 (391)
T 1l0q_A 140 VSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNV 219 (391)
T ss_dssp EEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEE
T ss_pred EEEEECCCCcEEEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEec
Confidence 9999999999999998888899999999998885 5567899999999876543322
Q ss_pred ----ceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEE-EEEECCCcEEEeC
Q 004207 721 ----QTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMV-ASASHDKCVKIWK 768 (768)
Q Consensus 721 ----~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~L-aSgs~DG~V~IWD 768 (768)
..|.+||+.+++..........+.+++|+|++++| ++++.|+.|++||
T Consensus 220 ~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d 272 (391)
T 1l0q_A 220 DKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVID 272 (391)
T ss_dssp CSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CcCCCcEEEEECCCCeEEEEEecCCCccEEEEccCCCEEEEEcCCCCEEEEEE
Confidence 16888998887766444344568999999999877 5668899999996
No 104
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.1e-24 Score=248.95 Aligned_cols=243 Identities=8% Similarity=0.049 Sum_probs=184.4
Q ss_pred cccccCccccCCCCEEEeecCCCcEEEeecCC--------------CCCCCCccccccccCCCceeeEEEEec-CCCCCe
Q 004207 494 SLTSAPNQLTDMDRFVDDGSLDDNVESFLSPD--------------DADPRDRVGRSAEVGKGFTFTEFQLIP-ASTSKV 558 (768)
Q Consensus 494 ~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~--------------~~d~~~~~~~~~~~~~~~~~~~~~~l~-~H~~~I 558 (768)
..++....+.+.+.++|+++.|++|+--.... .+++.+.....|..... ..+. .|...|
T Consensus 15 ~~~v~sv~~SpDG~~iASas~D~TV~d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~------~~~~~~~~~~V 88 (588)
T 2j04_A 15 EDWKNNLTWARDGTLYLTTFPDISIGQPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQN------GLLNSQPVCYP 88 (588)
T ss_dssp SSSSCCEEECTTSCEEEECSSSEEEEEECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSS------CSSTTSCSCCE
T ss_pred hccEEEEEECCCCCEEEEEcCCceeecccccceecCCCccEEEEEECCCCCcceEEEEeCCCc------eEeecCCCCcE
Confidence 34555666777888999999999996210000 01112222222221111 1122 568899
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCC-----CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCe--
Q 004207 559 ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ-----WITDVRFSPSLSRLATSSADRTVRVWDTENPDY-- 631 (768)
Q Consensus 559 ~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~-----~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~-- 631 (768)
++|+|||||.+||+++.||.|+|||.++ ++..+. |.. .|.+++|+|||++||+|+.||+|+|||+.++..
T Consensus 89 ~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~ 165 (588)
T 2j04_A 89 RVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENT 165 (588)
T ss_dssp EEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTC
T ss_pred EEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCcccc
Confidence 9999999999999999999999999654 666677 665 499999999999999999999999999998752
Q ss_pred ----eEEEe----ecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCee---EEEEe-c-CCCeeEEEEecCCCEEE
Q 004207 632 ----SLRTF----TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC---AGVFK-C-QSGATQMRFQPRLGRIL 698 (768)
Q Consensus 632 ----~~~~~----~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~---i~~~~-~-~~~i~sl~fsp~~~~ll 698 (768)
.+.++ .+|...|.+++|+|+| +++++.|+.|++||+..+.. ..++. . ...|.+++|+ +..++
T Consensus 166 ~~~i~l~ti~~~~~gh~~~V~sVawSPdg---Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LA 240 (588)
T 2j04_A 166 PEFYFESSIRLSDAGSKDWVTHIVWYEDV---LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVV 240 (588)
T ss_dssp CCCEEEEEEECSCTTCCCCEEEEEEETTE---EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEE
T ss_pred ccceeeeeeecccccccccEEEEEEcCCc---EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEE
Confidence 35665 6677899999999997 55778899999999988773 34553 3 4679999999 57777
Q ss_pred EEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEE--eCCCCEEEEEECCCcEEEeC
Q 004207 699 AAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAA--STVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 699 ags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~--spdg~~LaSgs~DG~V~IWD 768 (768)
+++ ++.|++||+.+..... ...+|.+.|.+++| +|++..|++++.||+ +||.
T Consensus 241 Sa~-~~tIkLWd~~~~~~~~----------------~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~ 294 (588)
T 2j04_A 241 LTC-PGYVHKIDLKNYSISS----------------LKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLL 294 (588)
T ss_dssp EEC-SSEEEEEETTTTEEEE----------------EECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEE
T ss_pred EEe-CCeEEEEECCCCeEEE----------------EEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEe
Confidence 776 7999999988755421 12279999999999 999999999999999 9884
No 105
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.93 E-value=3.8e-24 Score=240.36 Aligned_cols=217 Identities=13% Similarity=0.098 Sum_probs=173.5
Q ss_pred ecCCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEECC--CCeEEEEec--cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004207 551 IPASTSKVESCHFSPDGKLL-ATGGHDKKAVLWCTE--SFTVKSTLE--EHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (768)
Q Consensus 551 l~~H~~~I~sl~fSpdg~~L-aSgs~Dg~I~VWdl~--t~~~~~tl~--~h~~~V~sl~fspdg~~LaTgs~DgtIrVWD 625 (768)
..+|.+.|++++|+|++++| ++|+.||.|+|||+. +++.+..+. .|...|++++|+|++++|++|+.||.|++|+
T Consensus 98 ~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~ 177 (450)
T 2vdu_B 98 APPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSID 177 (450)
T ss_dssp --CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred CCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEe
Confidence 35678899999999999996 899999999999999 888887775 5678999999999999999999999999999
Q ss_pred CCCCCe---eEEEeecCCCCeEEEEEeCC--CCeEEEEEeCCCcEEEEECCCCeeEEEEe--cCCCeeEEEEecCCCEEE
Q 004207 626 TENPDY---SLRTFTGHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSGATQMRFQPRLGRIL 698 (768)
Q Consensus 626 l~t~~~---~~~~~~~h~~~V~slafsp~--g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~--~~~~i~sl~fsp~~~~ll 698 (768)
+.++.. ....+.+|...|++++|+|+ +..+|++|+.|+.|++||++++.++..+. +...|.+++|+ ++.+|+
T Consensus 178 ~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~ 256 (450)
T 2vdu_B 178 INSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLL 256 (450)
T ss_dssp TTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEE
T ss_pred cCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEE
Confidence 987653 23367789999999999998 23477799999999999999998887744 45779999999 999999
Q ss_pred EEEcCCeEEEEECCCceEeeecceeE-----Eee--cCCCc--eEEeccCCCCeeEEEEeCCCCEEEEEE-CCCcEEEeC
Q 004207 699 AAAIENYISILDVETQVCRLKLQTLE-----LWN--MTENK--TLTLSAHDKLVSSLAASTVNGMVASAS-HDKCVKIWK 768 (768)
Q Consensus 699 ags~Dg~I~IwD~~t~~~~~~~~~I~-----iwd--~~~~~--~~~l~~H~~~I~sla~spdg~~LaSgs-~DG~V~IWD 768 (768)
+++.|+.|++||+.++.+...+..-. +++ ..... ......+...|.+++|+|++.+|++++ .|+.|+|||
T Consensus 257 s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~ 336 (450)
T 2vdu_B 257 SAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILE 336 (450)
T ss_dssp EEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEE
T ss_pred EEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEE
Confidence 99999999999999987654332000 000 00000 000113456799999999999999999 899999996
No 106
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.2e-24 Score=235.26 Aligned_cols=261 Identities=7% Similarity=0.007 Sum_probs=186.6
Q ss_pred ccccCCCCCceEEEEecCCCCc------ccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceee
Q 004207 473 TLQHNGASSKSLLMFGSDGMGS------LTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFT 546 (768)
Q Consensus 473 ~l~~s~s~~~~~l~~~~~~~~~------~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~ 546 (768)
.+...++.+..+.+|....... ..+....+.+. +++|+.|++|++|..... ...++......+.
T Consensus 49 ~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~-------~~~~~~~~~~~~~ 118 (343)
T 3lrv_A 49 WVCMCRCEDGALHFTQLKDSKTITTITTPNPRTGGEHPA---IISRGPCNRLLLLYPGNQ-------ITILDSKTNKVLR 118 (343)
T ss_dssp EEEEEEEETTEEEEEEESSSSCEEEEEEECCCTTCCCCS---EEEECSTTEEEEEETTTE-------EEEEETTTCCEEE
T ss_pred CEEEEECCCCcEEEEECCCCcEEEEEecCCceeeeeCCc---eEEecCCCeEEEEEccCc-------eEEeecCCcceeE
Confidence 4567778888999998765422 11222222222 899999999999965321 1222322222222
Q ss_pred EEEEecCCCCCeEEEEEcC--CCCEEEEEeCCCcEEEEECCCCeEEEEec-cCCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q 004207 547 EFQLIPASTSKVESCHFSP--DGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRV 623 (768)
Q Consensus 547 ~~~~l~~H~~~I~sl~fSp--dg~~LaSgs~Dg~I~VWdl~t~~~~~tl~-~h~~~V~sl~fspdg~~LaTgs~DgtIrV 623 (768)
....+|.+.|.+++|+| ++++|++|+.||+|++||+++++.+.... .|...|++++|+|++.+|++|+.||+|+|
T Consensus 119 --~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~i 196 (343)
T 3lrv_A 119 --EIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDV 196 (343)
T ss_dssp --EEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEE
T ss_pred --EeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEE
Confidence 22237888999999999 99999999999999999999999877664 45568999999999999999999999999
Q ss_pred EECCCCCeeEEEeec-CCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec----CCCe--eEEEEecCCCE
Q 004207 624 WDTENPDYSLRTFTG-HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC----QSGA--TQMRFQPRLGR 696 (768)
Q Consensus 624 WDl~t~~~~~~~~~~-h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~----~~~i--~sl~fsp~~~~ 696 (768)
||+++++.....+.. |...|++++|+|++. +|++++ |+.|++||+++++++..+.. ...+ .+++|+|++.+
T Consensus 197 wd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~-~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 274 (343)
T 3lrv_A 197 YNLSSPDQASSRFPVDEEAKIKEVKFADNGY-WMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKN 274 (343)
T ss_dssp EESSCTTSCCEECCCCTTSCEEEEEECTTSS-EEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSE
T ss_pred EECCCCCCCccEEeccCCCCEEEEEEeCCCC-EEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCE
Confidence 999998864367777 999999999999987 555777 55999999998876654332 1222 46999999999
Q ss_pred EEEEEc-CCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeC---CCCEEEEEECCCcEEEe
Q 004207 697 ILAAAI-ENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAAST---VNGMVASASHDKCVKIW 767 (768)
Q Consensus 697 llags~-Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~sp---dg~~LaSgs~DG~V~IW 767 (768)
|++++. |+.|++|++.+.... |+. ..+..++|.+ +...|++++.||.+.++
T Consensus 275 l~~~s~~d~~i~v~~~~~~~~~--------~~~------------~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~ 329 (343)
T 3lrv_A 275 MIAYSNESNSLTIYKFDKKTKN--------WTK------------DEESALCLQSDTADFTDMDVVCGDGGIAAI 329 (343)
T ss_dssp EEEEETTTTEEEEEEECTTTCS--------EEE------------EEEEECCC----CCCCEEEEEEETTEEEEE
T ss_pred EEEecCCCCcEEEEEEcccccc--------eEe------------cCceeEecCccccccceeEEEecCCceEEE
Confidence 999998 999999998664321 221 2244455555 55566666666665553
No 107
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.93 E-value=8.7e-25 Score=233.44 Aligned_cols=246 Identities=13% Similarity=0.092 Sum_probs=198.4
Q ss_pred ccCCCCCceEEEEecCCCC-----------cccccCccccCCCC-EEEeecCCCcEEEeec-CCCCCCCCccccccccCC
Q 004207 475 QHNGASSKSLLMFGSDGMG-----------SLTSAPNQLTDMDR-FVDDGSLDDNVESFLS-PDDADPRDRVGRSAEVGK 541 (768)
Q Consensus 475 ~~s~s~~~~~l~~~~~~~~-----------~~~~~~~~l~~~~~-~latGS~D~~v~~w~~-~~~~d~~~~~~~~~~~~~ 541 (768)
...++.+..+.+|...... ...+....+.+.+. ++++|+.|+.|++|.. ....
T Consensus 26 l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~-------------- 91 (342)
T 1yfq_A 26 LLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPS-------------- 91 (342)
T ss_dssp EEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSS--------------
T ss_pred EEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCc--------------
Confidence 3444556666666654332 22233455566788 9999999999999955 3221
Q ss_pred CceeeEEEEecC--CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC---------CeEEEEeccCCCCEEEEEEcCCCC
Q 004207 542 GFTFTEFQLIPA--STSKVESCHFSPDGKLLATGGHDKKAVLWCTES---------FTVKSTLEEHTQWITDVRFSPSLS 610 (768)
Q Consensus 542 ~~~~~~~~~l~~--H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t---------~~~~~tl~~h~~~V~sl~fspdg~ 610 (768)
...+.+ |...|.+++|+| +.+|++++.|+.|++||+.+ ++++..+. |...|.+++|++++
T Consensus 92 ------~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~- 162 (342)
T 1yfq_A 92 ------FQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR- 162 (342)
T ss_dssp ------EEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE-
T ss_pred ------eEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc-
Confidence 245667 999999999999 99999999999999999987 66666665 88999999999886
Q ss_pred EEEEEeCCCcEEEEECCC-CCe-eEEEeecCCCCeEEEEEeC-CCCeEEEEEeCCCcEEEEECCCC------eeEEEEec
Q 004207 611 RLATSSADRTVRVWDTEN-PDY-SLRTFTGHSTTVMSLDFHP-SKEDLLCSCDNNSEIRYWSINNG------SCAGVFKC 681 (768)
Q Consensus 611 ~LaTgs~DgtIrVWDl~t-~~~-~~~~~~~h~~~V~slafsp-~g~~lLaSgs~Dg~I~iWDl~sg------~~i~~~~~ 681 (768)
|++++.|+.|++||+++ +.. .......|...|.+++|+| ++. +|++++.||.|++||++.. +....+..
T Consensus 163 -l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~-~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~ 240 (342)
T 1yfq_A 163 -LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQE-GYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRC 240 (342)
T ss_dssp -EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGC-EEEEEETTSEEEEEECCTTCCSTTCTTCEEEEC
T ss_pred -EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCC-EEEEEecCCcEEEEEEcCCCcccccccceeeec
Confidence 99999999999999998 553 2345566888999999999 876 6668889999999999876 67777765
Q ss_pred CC----------CeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccC-CCCeeEEEEeC
Q 004207 682 QS----------GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAH-DKLVSSLAAST 750 (768)
Q Consensus 682 ~~----------~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H-~~~I~sla~sp 750 (768)
+. .|.+++|+|++.+|++++.|+.|++||+.++.... .+..| ...|++++ |
T Consensus 241 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~----------------~~~~~h~~~v~~~~--~ 302 (342)
T 1yfq_A 241 HRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIK----------------NFAKFNEDSVVKIA--C 302 (342)
T ss_dssp CCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEE----------------ECCCCSSSEEEEEE--E
T ss_pred ccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhh----------------hhhcccCCCceEec--C
Confidence 42 79999999999999999999999999998876543 23467 89999999 9
Q ss_pred CCCEEEEEECCCc
Q 004207 751 VNGMVASASHDKC 763 (768)
Q Consensus 751 dg~~LaSgs~DG~ 763 (768)
++.+|++++.||+
T Consensus 303 ~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 303 SDNILCLATSDDT 315 (342)
T ss_dssp CSSEEEEEEECTH
T ss_pred CCCeEEEEecCCc
Confidence 9999999999998
No 108
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.93 E-value=1.9e-24 Score=233.47 Aligned_cols=198 Identities=12% Similarity=0.063 Sum_probs=148.4
Q ss_pred cCCCCCeEEEEEcCC----CCEEEEEeC--------------------CCcEEEEEC-CCCeEEEEeccCCCCEEEEEEc
Q 004207 552 PASTSKVESCHFSPD----GKLLATGGH--------------------DKKAVLWCT-ESFTVKSTLEEHTQWITDVRFS 606 (768)
Q Consensus 552 ~~H~~~I~sl~fSpd----g~~LaSgs~--------------------Dg~I~VWdl-~t~~~~~tl~~h~~~V~sl~fs 606 (768)
.-|...|.+++|+|| +.++++++. |+.|++|++ .+++.+..+.+|...++.++|+
T Consensus 108 ~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs 187 (356)
T 2w18_A 108 NLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFA 187 (356)
T ss_dssp SSSEEEEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEE
T ss_pred cccccceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEee
Confidence 334456788888888 777777653 788888888 4577777777888888888888
Q ss_pred C---CCCEEEEEeCCCcEEEEECCCCCeeEEEeecCC---CCeEEEEEeCCCCeE-----------EEEEeCCCcEEEEE
Q 004207 607 P---SLSRLATSSADRTVRVWDTENPDYSLRTFTGHS---TTVMSLDFHPSKEDL-----------LCSCDNNSEIRYWS 669 (768)
Q Consensus 607 p---dg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~---~~V~slafsp~g~~l-----------LaSgs~Dg~I~iWD 669 (768)
+ ++.+|++++.|++|+|||+++++. +.++.+|. ..+.+++|+|++..+ +++|+.|++|++||
T Consensus 188 ~~~g~~~~LaSgS~D~TIkIWDl~TGk~-l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd 266 (356)
T 2w18_A 188 EVQGMQEALLGTTIMNNIVIWNLKTGQL-LKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVIN 266 (356)
T ss_dssp EEETSTTEEEEEETTSEEEEEETTTCCE-EEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEE
T ss_pred ccCCCCceEEEecCCCcEEEEECCCCcE-EEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEE
Confidence 8 678999999999999999999885 77777654 367788999998755 36788999999999
Q ss_pred CCCCeeEEEEe-----c-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCe
Q 004207 670 INNGSCAGVFK-----C-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLV 743 (768)
Q Consensus 670 l~sg~~i~~~~-----~-~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I 743 (768)
..+++++.++. . ...+.+..+ .+..+++++.|++|+|||+.++++... +.+|...+
T Consensus 267 ~~tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~t----------------L~gH~~~v 328 (356)
T 2w18_A 267 PKTTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTAL----------------LPPVSDQH 328 (356)
T ss_dssp TTTTEEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEE----------------ECCC--CC
T ss_pred CCCCEEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEE----------------ecCCCCCe
Confidence 99999887663 1 112333333 366888999999999999998876543 34777655
Q ss_pred e-EEEEeCCCCEEEEEECCCcEEEeC
Q 004207 744 S-SLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 744 ~-sla~spdg~~LaSgs~DG~V~IWD 768 (768)
. +++|+|++.+|++|+.|++|+|||
T Consensus 329 vs~vafSPDG~~LaSGS~D~TIklWd 354 (356)
T 2w18_A 329 WSFVKWSGTDSHLLAGQKDGNIFVYH 354 (356)
T ss_dssp CCEEEECSSSSEEEEECTTSCEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCcEEEec
Confidence 5 689999999999999999999997
No 109
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.93 E-value=4.6e-24 Score=261.38 Aligned_cols=246 Identities=11% Similarity=0.105 Sum_probs=190.6
Q ss_pred ccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC
Q 004207 497 SAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD 576 (768)
Q Consensus 497 ~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~D 576 (768)
+...++++.+.+|++|+.|++|++|..... . ......|...|.+|+|+| +++|++++.|
T Consensus 20 V~~lafspdg~~lAsgs~Dg~I~lw~~~~~-------------------~-~~~~~~~~~~V~~l~fsp-g~~L~S~s~D 78 (902)
T 2oaj_A 20 PIAAAFDFTQNLLAIATVTGEVHIYGQQQV-------------------E-VVIKLEDRSAIKEMRFVK-GIYLVVINAK 78 (902)
T ss_dssp EEEEEEETTTTEEEEEETTSEEEEECSTTC-------------------E-EEEECSSCCCEEEEEEET-TTEEEEEETT
T ss_pred cEEEEECCCCCEEEEEeCCCEEEEEeCCCc-------------------E-EEEEcCCCCCEEEEEEcC-CCEEEEEECc
Confidence 344555667789999999999999943211 1 112235788999999999 8899999999
Q ss_pred CcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeE----------EEeecCCCCeEEE
Q 004207 577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL----------RTFTGHSTTVMSL 646 (768)
Q Consensus 577 g~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~----------~~~~~h~~~V~sl 646 (768)
++|+|||+.+++++.++. |...|++++|+|++++|++|+.||+|++||++++.... ..+.+|.+.|.+|
T Consensus 79 ~~v~lWd~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl 157 (902)
T 2oaj_A 79 DTVYVLSLYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSI 157 (902)
T ss_dssp CEEEEEETTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEE
T ss_pred CeEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEE
Confidence 999999999999988886 66889999999999999999999999999999865421 2236788999999
Q ss_pred EEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecC-------------------CCeeEEEEecCCCEEEEEEcCCeEE
Q 004207 647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-------------------SGATQMRFQPRLGRILAAAIENYIS 707 (768)
Q Consensus 647 afsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~-------------------~~i~sl~fsp~~~~llags~Dg~I~ 707 (768)
+|+|++..++++|+.|+.| +||+++++++..+..+ ..|.+++|+|++.+|++++.|+.|+
T Consensus 158 ~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~ 236 (902)
T 2oaj_A 158 QWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLV 236 (902)
T ss_dssp EEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEE
T ss_pred EEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEE
Confidence 9999866788899999999 9999999998888754 5699999999999999999999999
Q ss_pred EEECCCceEeeecceeEEeecCCCce-----EEeccCCCCeeEEEEeC----CC-CEEEEEECCC-----cEEEeC
Q 004207 708 ILDVETQVCRLKLQTLELWNMTENKT-----LTLSAHDKLVSSLAAST----VN-GMVASASHDK-----CVKIWK 768 (768)
Q Consensus 708 IwD~~t~~~~~~~~~I~iwd~~~~~~-----~~l~~H~~~I~sla~sp----dg-~~LaSgs~DG-----~V~IWD 768 (768)
+||+++++++.... +.+...... .....|...|++++|++ ++ .+|++|+.|. .|++|+
T Consensus 237 lWd~~~g~~~~~r~---l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~ 309 (902)
T 2oaj_A 237 FWDANSGHMIMART---VFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMID 309 (902)
T ss_dssp EEETTTCCEEEEEC---SSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEE
T ss_pred EEECCCCcEEEEEe---ecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEe
Confidence 99998876543100 000000000 00002566899999964 43 5677887763 677774
No 110
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.93 E-value=3.8e-24 Score=233.20 Aligned_cols=214 Identities=20% Similarity=0.359 Sum_probs=176.9
Q ss_pred EEEecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEe-------------ccCCCCEEEEEEcC-CCCEE
Q 004207 548 FQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTL-------------EEHTQWITDVRFSP-SLSRL 612 (768)
Q Consensus 548 ~~~l~~H~~~I~sl~fSp-dg~~LaSgs~Dg~I~VWdl~t~~~~~tl-------------~~h~~~V~sl~fsp-dg~~L 612 (768)
...+.+|.+.|++++|+| ++++|++|+.||.|+|||+.+++....+ .+|...|.+++|+| ++.+|
T Consensus 36 ~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 115 (408)
T 4a11_B 36 RDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMF 115 (408)
T ss_dssp EEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCE
T ss_pred eeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEE
Confidence 456778999999999999 9999999999999999999887654333 25999999999999 78899
Q ss_pred EEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCC--eEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEE
Q 004207 613 ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE--DLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMR 689 (768)
Q Consensus 613 aTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~--~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~ 689 (768)
++++.||.|++||++++.. +..+. +...+.++.|++.+. .++++++.|+.|++||+++++++..+.. ...|.+++
T Consensus 116 ~s~~~d~~i~iwd~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~ 193 (408)
T 4a11_B 116 TSSSFDKTLKVWDTNTLQT-ADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVS 193 (408)
T ss_dssp EEEETTSEEEEEETTTTEE-EEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEE
T ss_pred EEEeCCCeEEEeeCCCCcc-ceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEE
Confidence 9999999999999998664 44444 778899999998643 3788999999999999999998888874 56799999
Q ss_pred EecCCCE-EEEEEcCCeEEEEECCCceEeeecceeEEeecCCCc-----eEEeccCCCCeeEEEEeCCCCEEEEEECCCc
Q 004207 690 FQPRLGR-ILAAAIENYISILDVETQVCRLKLQTLELWNMTENK-----TLTLSAHDKLVSSLAASTVNGMVASASHDKC 763 (768)
Q Consensus 690 fsp~~~~-llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~-----~~~l~~H~~~I~sla~spdg~~LaSgs~DG~ 763 (768)
|+|++.+ +++++.|+.|++||+++.... +..++...+. ......|...|++++|+|++.+|++++.||.
T Consensus 194 ~~~~~~~ll~~~~~dg~i~i~d~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 268 (408)
T 4a11_B 194 WSPRYDYILATASADSRVKLWDVRRASGC-----LITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNR 268 (408)
T ss_dssp ECSSCTTEEEEEETTSCEEEEETTCSSCC-----SEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred ECCCCCcEEEEEcCCCcEEEEECCCCCcc-----cccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCe
Confidence 9999885 889999999999999876421 1222211111 1123578999999999999999999999999
Q ss_pred EEEeC
Q 004207 764 VKIWK 768 (768)
Q Consensus 764 V~IWD 768 (768)
|++||
T Consensus 269 i~vwd 273 (408)
T 4a11_B 269 MRLWN 273 (408)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99996
No 111
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.93 E-value=1e-23 Score=235.62 Aligned_cols=209 Identities=22% Similarity=0.424 Sum_probs=181.6
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004207 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (768)
Q Consensus 548 ~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~ 627 (768)
+....+|...|+|+.| ++++|++|+.||.|+|||+.+++.+..+.+|...|.+++| ++++|++|+.||+|+|||++
T Consensus 126 ~~~~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~ 201 (435)
T 1p22_A 126 IHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVN 201 (435)
T ss_dssp EECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESS
T ss_pred EecccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECC
Confidence 4445577888999888 8999999999999999999999999999999999999999 67899999999999999999
Q ss_pred CCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeE---EEEe-cCCCeeEEEEecCCCEEEEEEcC
Q 004207 628 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA---GVFK-CQSGATQMRFQPRLGRILAAAIE 703 (768)
Q Consensus 628 t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i---~~~~-~~~~i~sl~fsp~~~~llags~D 703 (768)
+++. +..+.+|...|.+++|+++ ++++|+.||.|++||++++..+ ..+. +...|.+++| ++.++++++.|
T Consensus 202 ~~~~-~~~~~~h~~~v~~l~~~~~---~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~d 275 (435)
T 1p22_A 202 TGEM-LNTLIHHCEAVLHLRFNNG---MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGD 275 (435)
T ss_dssp SCCE-EEEECCCCSCEEEEECCTT---EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETT
T ss_pred CCcE-EEEEcCCCCcEEEEEEcCC---EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCC
Confidence 8875 7888899999999999743 7889999999999999987655 3333 3567888888 56799999999
Q ss_pred CeEEEEECCCceEeeecc-----------------------eeEEeecCCCceE-EeccCCCCeeEEEEeCCCCEEEEEE
Q 004207 704 NYISILDVETQVCRLKLQ-----------------------TLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASAS 759 (768)
Q Consensus 704 g~I~IwD~~t~~~~~~~~-----------------------~I~iwd~~~~~~~-~l~~H~~~I~sla~spdg~~LaSgs 759 (768)
+.|++||+++......+. .|++||+.++..+ .+.+|...|.+++| ++.+|++|+
T Consensus 276 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~ 353 (435)
T 1p22_A 276 RTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGA 353 (435)
T ss_dssp SEEEEEETTTCCEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEE
T ss_pred CeEEEEECCcCcEEEEEcCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEe
Confidence 999999999876554432 7999999987765 67789999999999 688999999
Q ss_pred CCCcEEEeC
Q 004207 760 HDKCVKIWK 768 (768)
Q Consensus 760 ~DG~V~IWD 768 (768)
.||.|+|||
T Consensus 354 ~dg~i~vwd 362 (435)
T 1p22_A 354 YDGKIKVWD 362 (435)
T ss_dssp TTSCEEEEE
T ss_pred CCCcEEEEE
Confidence 999999997
No 112
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.5e-24 Score=260.60 Aligned_cols=207 Identities=21% Similarity=0.310 Sum_probs=174.5
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC--CCeEEEEeccCCCCEEEEEEcCC--CCEEEEEeCCCcEEEE
Q 004207 549 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE--SFTVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVW 624 (768)
Q Consensus 549 ~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~--t~~~~~tl~~h~~~V~sl~fspd--g~~LaTgs~DgtIrVW 624 (768)
..+.+|.+.|+|++|+|++++|++|+.||.|+|||+. +++.+..+.+|.+.|++++|+++ +++|++|+.||+|++|
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vw 82 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW 82 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEE
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEE
Confidence 4568999999999999999999999999999999998 56778889999999999999988 9999999999999999
Q ss_pred ECCCCCe-eEEEeecCCCCeEEEEEeCC--CCeEEEEEeCCCcEEEEECCCCee--EEEE-ecCCCeeEEEEec------
Q 004207 625 DTENPDY-SLRTFTGHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINNGSC--AGVF-KCQSGATQMRFQP------ 692 (768)
Q Consensus 625 Dl~t~~~-~~~~~~~h~~~V~slafsp~--g~~lLaSgs~Dg~I~iWDl~sg~~--i~~~-~~~~~i~sl~fsp------ 692 (768)
|++++.. .+..+.+|...|++++|+|+ +. ++++|+.||.|++||++++.. ...+ .+...|.+++|+|
T Consensus 83 d~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~-~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~ 161 (753)
T 3jro_A 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGP-LLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 161 (753)
T ss_dssp EEETTEEEEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC----
T ss_pred ECCCCcccccccccCCCCCeEEEEECCCCCCC-EEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccc
Confidence 9998652 46777889999999999998 55 677999999999999988732 2222 3467899999999
Q ss_pred -------CCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCC---CCEEEEEECCC
Q 004207 693 -------RLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTV---NGMVASASHDK 762 (768)
Q Consensus 693 -------~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spd---g~~LaSgs~DG 762 (768)
++..+++++.|+.|++||+++...... ....+.+|...|++++|+|+ +.+|++++.||
T Consensus 162 ~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~------------~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg 229 (753)
T 3jro_A 162 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYV------------LESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDR 229 (753)
T ss_dssp -----CGGGCCEEEEETTSCEEEEEEETTTTEEE------------EEEEECCCSSCEEEEEECCCCSSSEEEEEEESSS
T ss_pred cccccCCCCCEEEEEECCCeEEEEeccCCcccce------------eeeeecCCCCcEEEEEeccCCCCCCEEEEEecCC
Confidence 488999999999999999977532111 12245689999999999999 89999999999
Q ss_pred cEEEeC
Q 004207 763 CVKIWK 768 (768)
Q Consensus 763 ~V~IWD 768 (768)
.|+|||
T Consensus 230 ~I~iwd 235 (753)
T 3jro_A 230 TCIIWT 235 (753)
T ss_dssp CEEEEE
T ss_pred EEEEec
Confidence 999996
No 113
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.93 E-value=1.8e-24 Score=241.95 Aligned_cols=206 Identities=17% Similarity=0.335 Sum_probs=176.1
Q ss_pred EEEecCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCC----------CeEEEEeccCCCCEEEEEEcCCCC-EEEEE
Q 004207 548 FQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTES----------FTVKSTLEEHTQWITDVRFSPSLS-RLATS 615 (768)
Q Consensus 548 ~~~l~~H~~~I~sl~fSpd-g~~LaSgs~Dg~I~VWdl~t----------~~~~~tl~~h~~~V~sl~fspdg~-~LaTg 615 (768)
......|.+.|++++|+|+ +.+|++++.||.|+|||+.+ ...+..+.+|...|++++|+|++. +|++|
T Consensus 121 ~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 200 (430)
T 2xyi_A 121 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSA 200 (430)
T ss_dssp EEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEE
T ss_pred EEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEE
Confidence 3445689999999999997 67999999999999999986 677788899999999999999988 99999
Q ss_pred eCCCcEEEEECCCCCe------eEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCC---eeEEEEe-cCCCe
Q 004207 616 SADRTVRVWDTENPDY------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG---SCAGVFK-CQSGA 685 (768)
Q Consensus 616 s~DgtIrVWDl~t~~~------~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg---~~i~~~~-~~~~i 685 (768)
+.||+|+|||+..+.. ....+.+|...|.+++|+|++..+|++++.|+.|++||++++ ..+..+. +...|
T Consensus 201 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v 280 (430)
T 2xyi_A 201 SDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEV 280 (430)
T ss_dssp CTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCE
T ss_pred eCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCe
Confidence 9999999999987432 135677899999999999977779999999999999999987 4566664 46779
Q ss_pred eEEEEecCCC-EEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCC-EEEEEECCCc
Q 004207 686 TQMRFQPRLG-RILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVASASHDKC 763 (768)
Q Consensus 686 ~sl~fsp~~~-~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~-~LaSgs~DG~ 763 (768)
.+++|+|++. .+++++.|+.|++||+++... .+..+..|...|++++|+|++. +|++++.||.
T Consensus 281 ~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~---------------~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~ 345 (430)
T 2xyi_A 281 NCLSFNPYSEFILATGSADKTVALWDLRNLKL---------------KLHSFESHKDEIFQVQWSPHNETILASSGTDRR 345 (430)
T ss_dssp EEEEECSSCTTEEEEEETTSEEEEEETTCTTS---------------CSEEEECCSSCEEEEEECSSCTTEEEEEETTSC
T ss_pred EEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC---------------CeEEeecCCCCEEEEEECCCCCCEEEEEeCCCc
Confidence 9999999987 577899999999999986321 1234557999999999999985 7999999999
Q ss_pred EEEeC
Q 004207 764 VKIWK 768 (768)
Q Consensus 764 V~IWD 768 (768)
|+|||
T Consensus 346 i~iwd 350 (430)
T 2xyi_A 346 LHVWD 350 (430)
T ss_dssp CEEEE
T ss_pred EEEEe
Confidence 99996
No 114
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1e-23 Score=236.78 Aligned_cols=231 Identities=13% Similarity=0.084 Sum_probs=180.5
Q ss_pred CCCE-EEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004207 505 MDRF-VDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC 583 (768)
Q Consensus 505 ~~~~-latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWd 583 (768)
.+.+ +++|+.|+.|++|..... .+.....+. ...|...|++++|+|++++|++|+.||.|++|+
T Consensus 113 d~~~l~~~~~~dg~v~iwd~~~~--------------~~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~ 177 (450)
T 2vdu_B 113 DESRLIACADSDKSLLVFDVDKT--------------SKNVLKLRK-RFCFSKRPNAISIAEDDTTVIIADKFGDVYSID 177 (450)
T ss_dssp TSSEEEEEEGGGTEEEEEEECSS--------------SSSCEEEEE-EEECSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred CCCEEEEEECCCCeEEEEECcCC--------------CCceeeeee-cccCCCCceEEEEcCCCCEEEEEeCCCcEEEEe
Confidence 4556 499999999999966411 011111111 136778999999999999999999999999999
Q ss_pred CCCCeEEE----EeccCCCCEEEEEEcCC---CCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEE
Q 004207 584 TESFTVKS----TLEEHTQWITDVRFSPS---LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLL 656 (768)
Q Consensus 584 l~t~~~~~----tl~~h~~~V~sl~fspd---g~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lL 656 (768)
+.+++... .+.+|...|++++|+|+ +++|++|+.|++|+|||++++......+.+|...|.+++|+ ++. +|
T Consensus 178 ~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~-~l 255 (450)
T 2vdu_B 178 INSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDY-LL 255 (450)
T ss_dssp TTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STT-EE
T ss_pred cCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCC-EE
Confidence 98876544 77789999999999999 99999999999999999998876444467899999999999 766 66
Q ss_pred EEEeCCCcEEEEECCCCeeEEEEec--------------------------CCCeeEEEEecCCCEEEEEE-cCCeEEEE
Q 004207 657 CSCDNNSEIRYWSINNGSCAGVFKC--------------------------QSGATQMRFQPRLGRILAAA-IENYISIL 709 (768)
Q Consensus 657 aSgs~Dg~I~iWDl~sg~~i~~~~~--------------------------~~~i~sl~fsp~~~~llags-~Dg~I~Iw 709 (768)
++|+.|+.|++||+++++++..+.. ...+..++|+|++.++++++ .|+.|++|
T Consensus 256 ~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw 335 (450)
T 2vdu_B 256 LSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIIL 335 (450)
T ss_dssp EEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEE
T ss_pred EEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEE
Confidence 7999999999999999998888763 24588999999999999999 89999999
Q ss_pred EC--CCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEEC-------CCcEEEe
Q 004207 710 DV--ETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASH-------DKCVKIW 767 (768)
Q Consensus 710 D~--~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~-------DG~V~IW 767 (768)
|+ .+..... ....+..| ..|.+++|+|++ ++++.+. +..|.||
T Consensus 336 ~~~~~~~~~l~-------------~~~~~~~~-~~v~~~~~~~~~-~~v~~~~~~~~~~~~~~i~v~ 387 (450)
T 2vdu_B 336 EMSEKQKGDLA-------------LKQIITFP-YNVISLSAHNDE-FQVTLDNKESSGVQKNFAKFI 387 (450)
T ss_dssp EECSSSTTCEE-------------EEEEEECS-SCEEEEEEETTE-EEEEECCTTCCSSCCCSEEEE
T ss_pred EeccCCCCcee-------------eccEeccC-CceEEEEecCCc-EEEEEecccCCCCCCcceEEE
Confidence 98 4331110 01234456 789999999954 4444432 4557777
No 115
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.92 E-value=5.2e-23 Score=227.97 Aligned_cols=254 Identities=10% Similarity=0.118 Sum_probs=202.6
Q ss_pred CccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCc
Q 004207 499 PNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKK 578 (768)
Q Consensus 499 ~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~ 578 (768)
...+.+.+.++++++.|+.|++|....... ........+.+|.+.|.+++|++++.++++++.|+.
T Consensus 127 ~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~--------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~ 192 (433)
T 3bws_A 127 SVRFIDNTRLAIPLLEDEGMDVLDINSGQT--------------VRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANA 192 (433)
T ss_dssp CCEESSSSEEEEEBTTSSSEEEEETTTCCE--------------EEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTE
T ss_pred EEEEeCCCeEEEEeCCCCeEEEEECCCCeE--------------eeecCcccccccCCceeEEEEcCCCEEEEEECCCCE
Confidence 344555667888888999999996543310 000011134689999999999999999999999999
Q ss_pred EEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEE
Q 004207 579 AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLC 657 (768)
Q Consensus 579 I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs-~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLa 657 (768)
|++||+++++.+..+..|...+.+++|+|+++++++++ .|+.|++||+++++. +..+.. ...+.+++|+|++..+++
T Consensus 193 v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~-~~~~~~-~~~~~~~~~~~~g~~l~~ 270 (433)
T 3bws_A 193 VHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLE-IRKTDK-IGLPRGLLLSKDGKELYI 270 (433)
T ss_dssp EEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEE-EEECCC-CSEEEEEEECTTSSEEEE
T ss_pred EEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcE-EEEecC-CCCceEEEEcCCCCEEEE
Confidence 99999999999999988999999999999999885554 799999999998664 555554 456999999999886665
Q ss_pred EEe-------CCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEE-EcCCeEEEEECCCceEeeecc--------
Q 004207 658 SCD-------NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAA-AIENYISILDVETQVCRLKLQ-------- 721 (768)
Q Consensus 658 Sgs-------~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llag-s~Dg~I~IwD~~t~~~~~~~~-------- 721 (768)
++. .|+.|++||+++++.+..+.....+.+++|+|++..++++ +.++.|++||+.+.+....+.
T Consensus 271 ~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~ 350 (433)
T 3bws_A 271 AQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVFDKPNTI 350 (433)
T ss_dssp EEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEE
T ss_pred EECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCCCCCCeE
Confidence 543 5889999999999988888777789999999999876554 689999999998765432221
Q ss_pred -------------------------------eeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEEC-CCcEEEeC
Q 004207 722 -------------------------------TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASH-DKCVKIWK 768 (768)
Q Consensus 722 -------------------------------~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~-DG~V~IWD 768 (768)
.|.+||..+++......+...+.+++|+|++++|++++. |+.|+||+
T Consensus 351 ~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~ 429 (433)
T 3bws_A 351 ALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQPTGLDVSPDNRYLVISDFLDHQIRVYR 429 (433)
T ss_dssp EECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSSSEEEEEECTTSCEEEEEETTTTEEEEEE
T ss_pred EEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCCCCceEEEcCCCCEEEEEECCCCeEEEEE
Confidence 478899888887765555678999999999999998875 99999996
No 116
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.92 E-value=2.5e-23 Score=254.86 Aligned_cols=207 Identities=16% Similarity=0.152 Sum_probs=169.1
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCe
Q 004207 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY 631 (768)
Q Consensus 552 ~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~ 631 (768)
.+|.+.|+|++|+|++++||+|+.||+|+||+..+.+....+ .|...|.+|+|+| +++|++++.|++|+|||+++++.
T Consensus 14 ~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~-~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~ 91 (902)
T 2oaj_A 14 YGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKL-EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKV 91 (902)
T ss_dssp EECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEEC-SSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSE
T ss_pred cCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEc-CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcE
Confidence 489999999999999999999999999999999888777665 4788999999999 88999999999999999998775
Q ss_pred eEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEE-E----------e-cCCCeeEEEEecCC-CEEE
Q 004207 632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV-F----------K-CQSGATQMRFQPRL-GRIL 698 (768)
Q Consensus 632 ~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~-~----------~-~~~~i~sl~fsp~~-~~ll 698 (768)
+..+. |...|++++|+|++. +|++|+.||.|++||++++.+... + . +...|.+++|+|++ ..++
T Consensus 92 -~~~~~-~~~~V~~v~~sp~g~-~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~ 168 (902)
T 2oaj_A 92 -LTTVF-VPGKITSIDTDASLD-WMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVL 168 (902)
T ss_dssp -EEEEE-CSSCEEEEECCTTCS-EEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEE
T ss_pred -EEEEc-CCCCEEEEEECCCCC-EEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEE
Confidence 55555 678999999999987 566899999999999998876411 1 1 24679999999964 6788
Q ss_pred EEEcCCeEEEEECCCceEeeecceeEEeecCCCce------EEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 699 AAAIENYISILDVETQVCRLKLQTLELWNMTENKT------LTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 699 ags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~------~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
+++.|+.| +||+++..+...+. .....+.. .....|...|++++|+|++.+|++++.||+|+|||
T Consensus 169 ~g~~dg~v-lWd~~~~~~~~~~~----~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd 239 (902)
T 2oaj_A 169 ISYEYVTL-TYSLVENEIKQSFI----YELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWD 239 (902)
T ss_dssp EECSSCEE-EEETTTTEEEEEEC----CCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred EEeCCCcE-EEECCCCceEEEEe----cccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Confidence 88999999 99999887643322 00000000 01234678899999999999999999999999997
No 117
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.91 E-value=5e-23 Score=228.08 Aligned_cols=221 Identities=10% Similarity=0.036 Sum_probs=188.7
Q ss_pred eEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE-----EeccCCCCEEEEEEcCCCCEEEEEeCCCc
Q 004207 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS-----TLEEHTQWITDVRFSPSLSRLATSSADRT 620 (768)
Q Consensus 546 ~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~-----tl~~h~~~V~sl~fspdg~~LaTgs~Dgt 620 (768)
..+..+..+. .+.+++|+|++.++++++.|+.|++||+.+++.+. .+.+|...|.+++|++++.++++++.|+.
T Consensus 114 ~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~ 192 (433)
T 3bws_A 114 RFISRFKTGF-QPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANA 192 (433)
T ss_dssp EEEEEEECSS-CBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTE
T ss_pred eEEEEEcCCC-CceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCE
Confidence 4445555554 46699999977788888889999999999998887 34578889999999999999999999999
Q ss_pred EEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEE
Q 004207 621 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAA 700 (768)
Q Consensus 621 IrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llag 700 (768)
|++||+++++. +..+..|...+.+++|+|++..++++++.|+.|++||+++++.+..+..+..+.+++|+|++.+++++
T Consensus 193 v~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~ 271 (433)
T 3bws_A 193 VHVFDLKTLAY-KATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIA 271 (433)
T ss_dssp EEEEETTTCCE-EEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEE
T ss_pred EEEEECCCceE-EEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEE
Confidence 99999998765 66777889999999999999988888888999999999999999888887789999999999999988
Q ss_pred E--------cCCeEEEEECCCceEeeecc-------------------------eeEEeecCCCceEEeccCCCCeeEEE
Q 004207 701 A--------IENYISILDVETQVCRLKLQ-------------------------TLELWNMTENKTLTLSAHDKLVSSLA 747 (768)
Q Consensus 701 s--------~Dg~I~IwD~~t~~~~~~~~-------------------------~I~iwd~~~~~~~~l~~H~~~I~sla 747 (768)
+ .|+.|++||+.+++...... .+.+||+.+++......+...+.+++
T Consensus 272 ~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~ 351 (433)
T 3bws_A 272 QFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVFDKPNTIA 351 (433)
T ss_dssp EEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEE
T ss_pred ECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCCCCCCeEE
Confidence 8 48899999998765433221 78899999888776667888899999
Q ss_pred EeCCCCEEEEEEC---------------CCcEEEeC
Q 004207 748 ASTVNGMVASASH---------------DKCVKIWK 768 (768)
Q Consensus 748 ~spdg~~LaSgs~---------------DG~V~IWD 768 (768)
|+|++.+|++++. ||.|++||
T Consensus 352 ~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d 387 (433)
T 3bws_A 352 LSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVID 387 (433)
T ss_dssp ECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEE
T ss_pred EcCCCCEEEEEecCCCccccccccccccceEEEEEE
Confidence 9999999988887 57999996
No 118
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.91 E-value=2.3e-22 Score=211.98 Aligned_cols=206 Identities=19% Similarity=0.311 Sum_probs=173.4
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEec--cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEE
Q 004207 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE--EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 634 (768)
Q Consensus 557 ~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~--~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~ 634 (768)
.+.+|+||+++ +||+| .|++|+|||+++++++..+. +|...|++|+|+|++++|++|+.||+|+|||+++++. +.
T Consensus 27 y~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~-~~ 103 (318)
T 4ggc_A 27 YLNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR-LR 103 (318)
T ss_dssp TCBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE-EE
T ss_pred cceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCcee-EE
Confidence 36789999876 77766 59999999999999887664 6778899999999999999999999999999998765 78
Q ss_pred EeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCe-eEEEEe-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECC
Q 004207 635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVE 712 (768)
Q Consensus 635 ~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~-~i~~~~-~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~ 712 (768)
.+.+|...+.++.+.+ .++++++.++.+++|+..... .+..+. +...+..+.+.+++.++++++.|+.|++||++
T Consensus 104 ~~~~h~~~~~~~~~~~---~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~ 180 (318)
T 4ggc_A 104 NMTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSA 180 (318)
T ss_dssp EEECCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESS
T ss_pred EecCccceEEEeecCC---CEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECC
Confidence 8899999998887764 378899999999999998754 344444 35678999999999999999999999999998
Q ss_pred CceEeee--------------------------------cceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEE-
Q 004207 713 TQVCRLK--------------------------------LQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS- 759 (768)
Q Consensus 713 t~~~~~~--------------------------------~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs- 759 (768)
++..... ...|++||...........|...|..+.|++++..+++++
T Consensus 181 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg 260 (318)
T 4ggc_A 181 PGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHG 260 (318)
T ss_dssp CBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEEC
T ss_pred CCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecccccceEEEEE
Confidence 6532110 0168999999988888888889999999999999888765
Q ss_pred -CCCcEEEeC
Q 004207 760 -HDKCVKIWK 768 (768)
Q Consensus 760 -~DG~V~IWD 768 (768)
.|+.|+|||
T Consensus 261 ~~d~~i~iwd 270 (318)
T 4ggc_A 261 FAQNQLVIWK 270 (318)
T ss_dssp TTTCCEEEEE
T ss_pred cCCCEEEEEE
Confidence 799999996
No 119
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.91 E-value=1.3e-23 Score=232.42 Aligned_cols=215 Identities=15% Similarity=0.116 Sum_probs=145.0
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE-----EeccCCCCEEEEEEcC--------CCCEEEEEeCCC
Q 004207 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS-----TLEEHTQWITDVRFSP--------SLSRLATSSADR 619 (768)
Q Consensus 553 ~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~-----tl~~h~~~V~sl~fsp--------dg~~LaTgs~Dg 619 (768)
.|...+....+++++.+|++++.|++|+|||+++++... .+.+|.+.|++|+|+| |+++||+|+.|+
T Consensus 87 ~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~ 166 (393)
T 4gq1_A 87 LHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDC 166 (393)
T ss_dssp ----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTS
T ss_pred ccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCC
Confidence 444555555566678899999999999999998876543 3578999999999997 788999999999
Q ss_pred cEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEe-------------------
Q 004207 620 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK------------------- 680 (768)
Q Consensus 620 tIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~------------------- 680 (768)
+|+|||++++.. +..+..|...|.+++|+|++..+|++|+.|++|++||++++.......
T Consensus 167 tv~~Wd~~~~~~-~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~ 245 (393)
T 4gq1_A 167 TLIIWRLTDEGP-ILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLV 245 (393)
T ss_dssp EEEEEEEETTEE-EEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC
T ss_pred eEEEEECCCCce-eeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccce
Confidence 999999987665 556667889999999999988889999999999999999876443221
Q ss_pred -------cCCCeeEEEEe-cCCCEEEEEEcCCeEEEEECCCceEeeecc--eeEEeecCCCc-eEEeccCCCCeeEEEEe
Q 004207 681 -------CQSGATQMRFQ-PRLGRILAAAIENYISILDVETQVCRLKLQ--TLELWNMTENK-TLTLSAHDKLVSSLAAS 749 (768)
Q Consensus 681 -------~~~~i~sl~fs-p~~~~llags~Dg~I~IwD~~t~~~~~~~~--~I~iwd~~~~~-~~~l~~H~~~I~sla~s 749 (768)
+...+.++.|. +++..+++++.|+.|++||+.+......+. ...++...... ......+...+..+.+.
T Consensus 246 ~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (393)
T 4gq1_A 246 NTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHP 325 (393)
T ss_dssp ------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECS
T ss_pred eeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEcc
Confidence 12346778886 788999999999999999998876544332 12222222111 11233333334444433
Q ss_pred CCC-CEEEEEECCCcEEEeC
Q 004207 750 TVN-GMVASASHDKCVKIWK 768 (768)
Q Consensus 750 pdg-~~LaSgs~DG~V~IWD 768 (768)
+.+ .++++|+.||.|+|||
T Consensus 326 ~~~~~~~~sgs~Dg~V~lwd 345 (393)
T 4gq1_A 326 RYMDYFATAHSQHGLIQLIN 345 (393)
T ss_dssp SCTTEEEEEETTTTEEEEEE
T ss_pred CCCCEEEEEECCCCEEEEEE
Confidence 333 4667788899999996
No 120
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.91 E-value=1.7e-22 Score=220.44 Aligned_cols=245 Identities=9% Similarity=0.158 Sum_probs=179.0
Q ss_pred ccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEE-EEEeC
Q 004207 497 SAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLL-ATGGH 575 (768)
Q Consensus 497 ~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~L-aSgs~ 575 (768)
+....+.+.+.++++|+.|+ +++|..... ...... +...+..++|.++++++ ++++.
T Consensus 22 V~~v~fs~dg~~la~g~~~~-~~iw~~~~~-------------------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 79 (355)
T 3vu4_A 22 VTDYEFNQDQSCLILSTLKS-FEIYNVHPV-------------------AHIMSQ--EMRHLSKVRMLHRTNYVAFVTGV 79 (355)
T ss_dssp CCEEEECTTSSEEEEECSSE-EEEEEETTE-------------------EEEEEE--ECSCCCEEEECTTSSEEEEECSS
T ss_pred eEEEEECCCCCEEEEEcCCE-EEEEecCCc-------------------ceeeee--ecCCeEEEEEcCCCCEEEEEECC
Confidence 33444455677999998765 789954211 111111 11248888999988877 56778
Q ss_pred CCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCC-----------------------------------CEEEE--EeCC
Q 004207 576 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL-----------------------------------SRLAT--SSAD 618 (768)
Q Consensus 576 Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg-----------------------------------~~LaT--gs~D 618 (768)
|++|+|||+.+++++..+. |...|.+++|+++. .++++ |+.|
T Consensus 80 d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~ 158 (355)
T 3vu4_A 80 KEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNL 158 (355)
T ss_dssp TTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCT
T ss_pred ccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcC
Confidence 8999999999999998886 56689999998752 23344 4678
Q ss_pred CcEEEEECCCCC--------------ee-EEEeecCCCCeEEEEEeCCCCeEEEEEeCCCc-EEEEECCCCeeEEEEe--
Q 004207 619 RTVRVWDTENPD--------------YS-LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE-IRYWSINNGSCAGVFK-- 680 (768)
Q Consensus 619 gtIrVWDl~t~~--------------~~-~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~-I~iWDl~sg~~i~~~~-- 680 (768)
|+|++||++++. .+ +..+.+|...|++++|+|++. +|++|+.|++ |++||+++++++..+.
T Consensus 159 g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~-~l~s~s~d~~~v~iwd~~~~~~~~~~~~g 237 (355)
T 3vu4_A 159 GQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSD-MVATCSQDGTIIRVFKTEDGVLVREFRRG 237 (355)
T ss_dssp TCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSS-EEEEEETTCSEEEEEETTTCCEEEEEECT
T ss_pred cEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCC-EEEEEeCCCCEEEEEECCCCcEEEEEEcC
Confidence 888999888654 11 577889999999999999976 7779999998 9999999999999998
Q ss_pred -cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEee--eccee-------EEeecCCCceEEec-cCCCCeeEEEEe
Q 004207 681 -CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRL--KLQTL-------ELWNMTENKTLTLS-AHDKLVSSLAAS 749 (768)
Q Consensus 681 -~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~--~~~~I-------~iwd~~~~~~~~l~-~H~~~I~sla~s 749 (768)
+...|.+++|+|++.+|++++.|+.|++||++...... .+..+ ..|.+ ....+. .+...+..++|+
T Consensus 238 ~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~a~~ 314 (355)
T 3vu4_A 238 LDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSL---CNFKLSVDKHVRGCKIAWI 314 (355)
T ss_dssp TCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCS---EEEECCCCTTCCCCEEEES
T ss_pred CCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccce---eEEEeccCCCCCceEEEEe
Confidence 56789999999999999999999999999997653211 11100 00110 011111 223345779999
Q ss_pred CCCCEEEEEECCCcEEEeC
Q 004207 750 TVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 750 pdg~~LaSgs~DG~V~IWD 768 (768)
+++.+|++++.||.+++|+
T Consensus 315 ~d~~~l~~~~~dg~~~~~~ 333 (355)
T 3vu4_A 315 SESSLVVVWPHTRMIETFK 333 (355)
T ss_dssp SSSEEEEEETTTTEEEEEE
T ss_pred CCCCEEEEEeCCCeEEEEE
Confidence 9999999999999999985
No 121
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.90 E-value=2.9e-22 Score=219.78 Aligned_cols=193 Identities=17% Similarity=0.172 Sum_probs=156.6
Q ss_pred ccccCCCCEEE--eecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCC
Q 004207 500 NQLTDMDRFVD--DGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDK 577 (768)
Q Consensus 500 ~~l~~~~~~la--tGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg 577 (768)
.++.+.+++++ +|+.|++|++|+.... ..+..+ .|.+.|.+|+|+|||++|++++.|
T Consensus 139 v~fSpDg~~la~as~~~d~~i~iwd~~~~-------------------~~~~~~-~~~~~V~~v~fspdg~~l~s~s~~- 197 (365)
T 4h5i_A 139 VYISREGTVAAIASSKVPAIMRIIDPSDL-------------------TEKFEI-ETRGEVKDLHFSTDGKVVAYITGS- 197 (365)
T ss_dssp EEECTTSSCEEEEESCSSCEEEEEETTTT-------------------EEEEEE-ECSSCCCEEEECTTSSEEEEECSS-
T ss_pred EEEcCCCCEEEEEECCCCCEEEEeECCCC-------------------cEEEEe-CCCCceEEEEEccCCceEEeccce-
Confidence 45666677654 5668999999965332 223333 377889999999999999999855
Q ss_pred cEEEEECCCCeEEE--EeccCCCCEEEEEEcCCCCEEEEEeCCC----cEEEEECCCCCee---EEEeecCCCCeEEEEE
Q 004207 578 KAVLWCTESFTVKS--TLEEHTQWITDVRFSPSLSRLATSSADR----TVRVWDTENPDYS---LRTFTGHSTTVMSLDF 648 (768)
Q Consensus 578 ~I~VWdl~t~~~~~--tl~~h~~~V~sl~fspdg~~LaTgs~Dg----tIrVWDl~t~~~~---~~~~~~h~~~V~slaf 648 (768)
.+++|+..+++.+. ....|...|.+++|+|++.++++++.|+ +|++||+...... ...+.+|...|++++|
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~ 277 (365)
T 4h5i_A 198 SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDV 277 (365)
T ss_dssp CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEE
T ss_pred eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEE
Confidence 56677766666553 3456888999999999999999999887 6888998765432 3567789999999999
Q ss_pred eCCCCeEEEEEeCCCcEEEEECCCCeeEEEEe--cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCc
Q 004207 649 HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSGATQMRFQPRLGRILAAAIENYISILDVETQ 714 (768)
Q Consensus 649 sp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~--~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~ 714 (768)
+|++. +|++|+.|++|+|||+++++++..+. +...|++++|+|++.+|++++.|++|+|||+...
T Consensus 278 Spdg~-~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 278 DMKGE-LAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp CTTSC-EEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred CCCCC-ceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 99987 77799999999999999999998863 4677999999999999999999999999999653
No 122
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.90 E-value=1.5e-22 Score=220.92 Aligned_cols=200 Identities=13% Similarity=0.130 Sum_probs=154.2
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEEC
Q 004207 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDT 626 (768)
Q Consensus 548 ~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~L-aTgs~DgtIrVWDl 626 (768)
+..+..|...|+|++|+|||++|++|+.|+ ++|||+++++.......+ .+..++|.++++.+ ++++.|++|+|||+
T Consensus 12 ~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~v~iWd~ 88 (355)
T 3vu4_A 12 IVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR--HLSKVRMLHRTNYVAFVTGVKEVVHIWDD 88 (355)
T ss_dssp -------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECS--CCCEEEECTTSSEEEEECSSTTEEEEEET
T ss_pred ccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecC--CeEEEEEcCCCCEEEEEECCccEEEEEEC
Confidence 445678999999999999999999998775 789999988776555432 47888999888877 56778899999999
Q ss_pred CCCCeeEEEeecCCCCeEEEEEeCCC-----------------------------------CeEEEE-EeCCCcEEEEEC
Q 004207 627 ENPDYSLRTFTGHSTTVMSLDFHPSK-----------------------------------EDLLCS-CDNNSEIRYWSI 670 (768)
Q Consensus 627 ~t~~~~~~~~~~h~~~V~slafsp~g-----------------------------------~~lLaS-gs~Dg~I~iWDl 670 (768)
.+++. +..+. |...|.+++|+++. ..++++ |+.||.|++||+
T Consensus 89 ~~~~~-~~~~~-~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~g~v~iwd~ 166 (355)
T 3vu4_A 89 VKKQD-VSRIK-VDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHITKL 166 (355)
T ss_dssp TTTEE-EEEEE-CSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCTTCEEEEEC
T ss_pred CCCcE-EEEEE-CCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcCcEEEEEEC
Confidence 98765 55555 66688888887642 112222 577889999998
Q ss_pred CCCe----------------eEEEEec-CCCeeEEEEecCCCEEEEEEcCCe-EEEEECCCceEeeecceeEEeecCCCc
Q 004207 671 NNGS----------------CAGVFKC-QSGATQMRFQPRLGRILAAAIENY-ISILDVETQVCRLKLQTLELWNMTENK 732 (768)
Q Consensus 671 ~sg~----------------~i~~~~~-~~~i~sl~fsp~~~~llags~Dg~-I~IwD~~t~~~~~~~~~I~iwd~~~~~ 732 (768)
+++. ++..+.. ...|.+++|+|++.+|++++.|++ |++||++++.+..
T Consensus 167 ~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~-------------- 232 (355)
T 3vu4_A 167 QSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVR-------------- 232 (355)
T ss_dssp CC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEE--------------
T ss_pred CCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE--------------
Confidence 8765 1445543 567999999999999999999998 9999998876543
Q ss_pred eEEec-c-CCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 733 TLTLS-A-HDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 733 ~~~l~-~-H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
.+. + |...|++++|+|++.+|++++.|++|+|||
T Consensus 233 --~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~ 268 (355)
T 3vu4_A 233 --EFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFE 268 (355)
T ss_dssp --EEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEE
T ss_pred --EEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEE
Confidence 233 4 899999999999999999999999999996
No 123
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.90 E-value=5.6e-23 Score=234.94 Aligned_cols=228 Identities=11% Similarity=0.130 Sum_probs=180.0
Q ss_pred cCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCC-----CeEEEEEcCCCCEEEEEeCCC
Q 004207 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS-----KVESCHFSPDGKLLATGGHDK 577 (768)
Q Consensus 503 ~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~-----~I~sl~fSpdg~~LaSgs~Dg 577 (768)
.+.+..||+++.|++|++|... + .+..+. |.. .|.+++|||||++||+|+.||
T Consensus 94 SPdG~~LAs~s~dg~V~iwd~~-----------------~----~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DG 151 (588)
T 2j04_A 94 SPIDDWMAVLSNNGNVSVFKDN-----------------K----MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDG 151 (588)
T ss_dssp CSSSSCEEEEETTSCEEEEETT-----------------E----EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTS
T ss_pred CCCCCEEEEEeCCCcEEEEeCC-----------------c----eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCC
Confidence 3356789999999999999521 0 344455 554 599999999999999999999
Q ss_pred cEEEEECCCCe-------EEEEe----ccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCe--eEEEe-ecCCCCe
Q 004207 578 KAVLWCTESFT-------VKSTL----EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY--SLRTF-TGHSTTV 643 (768)
Q Consensus 578 ~I~VWdl~t~~-------~~~tl----~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~--~~~~~-~~h~~~V 643 (768)
+|+|||+.+++ .+.++ .+|...|.+|+|+|++ |++++.|++|++||+..+.. ...++ .+|...|
T Consensus 152 tVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V 229 (588)
T 2j04_A 152 ELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKI 229 (588)
T ss_dssp EEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCC
T ss_pred EEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcE
Confidence 99999999875 35676 6778899999999998 88899999999999987663 23455 4788999
Q ss_pred EEEEEeCCCCeEEEEEeCCCcEEEEECCCCee-EEEEecCCCeeEEEE--ecCCCEEEEEEcCCeEEEEECCCceEee--
Q 004207 644 MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGVFKCQSGATQMRF--QPRLGRILAAAIENYISILDVETQVCRL-- 718 (768)
Q Consensus 644 ~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~-i~~~~~~~~i~sl~f--sp~~~~llags~Dg~I~IwD~~t~~~~~-- 718 (768)
.+++|+ +. .+++++ +++|++||+.++.. ...+.+...+..+.| +|++..+++++.||+ ++|.........
T Consensus 230 ~svaFs--g~-~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~~~~spd~ 304 (588)
T 2j04_A 230 TDLKIV--DY-KVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDELHVTADN 304 (588)
T ss_dssp CCEEEE--TT-EEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSSEEEECCC
T ss_pred EEEEEE--CC-EEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeeccEEECCCc
Confidence 999999 44 566666 69999999998887 444456777999999 999888888888999 999986422110
Q ss_pred -----ecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEEC
Q 004207 719 -----KLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASH 760 (768)
Q Consensus 719 -----~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~ 760 (768)
..+.+++|+...+....+ .+...|++++|+|+|..+|+++.
T Consensus 305 ~l~a~~d~~v~lW~~~g~~l~~~-~~~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 305 IIAPYLEKKFKKWSTIWNEFNNY-ETTLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp SSHHHHHHHHHHTTTTTTSSSSS-CCEEEEEEEEECTTSSEEEEEEE
T ss_pred eEEEEcCCEEEEEECCCCceeee-ccceEEEEEEECCCCCEEEEEEe
Confidence 122688898766654433 33667999999999999999874
No 124
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.90 E-value=3.8e-21 Score=213.88 Aligned_cols=220 Identities=17% Similarity=0.319 Sum_probs=186.8
Q ss_pred CCceEEEEecCCC----------CcccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEE
Q 004207 480 SSKSLLMFGSDGM----------GSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQ 549 (768)
Q Consensus 480 ~~~~~l~~~~~~~----------~~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 549 (768)
-+..+.+|..... +...+....+.+.+.+|++|+.|++|++|..... +.+.
T Consensus 123 ld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~-------------------~~~~ 183 (420)
T 4gga_A 123 LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ-------------------KRLR 183 (420)
T ss_dssp ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTT-------------------EEEE
T ss_pred eCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCC-------------------cEEE
Confidence 3678888886643 1223556778889999999999999999965332 3466
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-CeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004207 550 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES-FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 628 (768)
Q Consensus 550 ~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t-~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t 628 (768)
.+.+|...|.+++| ++.+|++|+.|+.+++||... ...+.++.+|...+.++.|+|++.+|++++.|+.|+|||..+
T Consensus 184 ~~~~h~~~v~~~s~--~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~ 261 (420)
T 4gga_A 184 NMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAP 261 (420)
T ss_dssp EECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSC
T ss_pred EEeCCCCceEEEee--CCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeecc
Confidence 77899999999988 578999999999999999876 456678899999999999999999999999999999999987
Q ss_pred CCe---eEEEeecCCCCeEEEEEeCCCCeEEEEE--eCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEE--
Q 004207 629 PDY---SLRTFTGHSTTVMSLDFHPSKEDLLCSC--DNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA-- 701 (768)
Q Consensus 629 ~~~---~~~~~~~h~~~V~slafsp~g~~lLaSg--s~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags-- 701 (768)
++. .+.....|...|.+++|+|.+..+++++ +.|++|++||++++.++..+..+..+.++.|++++..+++++
T Consensus 262 ~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~ 341 (420)
T 4gga_A 262 GEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGF 341 (420)
T ss_dssp CSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECT
T ss_pred ccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEec
Confidence 653 3567788999999999999988888764 579999999999999999999999999999999999998876
Q ss_pred cCCeEEEEECCCceEeeec
Q 004207 702 IENYISILDVETQVCRLKL 720 (768)
Q Consensus 702 ~Dg~I~IwD~~t~~~~~~~ 720 (768)
.|+.|+|||+.++.++..+
T Consensus 342 ~d~~I~iwd~~~~~~v~~l 360 (420)
T 4gga_A 342 AQNQLVIWKYPTMAKVAEL 360 (420)
T ss_dssp TTCCEEEEETTTCCEEEEE
T ss_pred CCCEEEEEECCCCcEEEEE
Confidence 6899999999988776554
No 125
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.88 E-value=8.7e-21 Score=207.13 Aligned_cols=198 Identities=11% Similarity=0.137 Sum_probs=170.4
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEE
Q 004207 568 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL 646 (768)
Q Consensus 568 ~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~L-aTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~sl 646 (768)
.++++++.|+.|++||+.+++++..+..|. .+.+++|+|++++| ++++.|++|++||+.+++. +..+..+. .+.++
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~-~~~~~~~~-~v~~~ 79 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV-IATVPAGS-SPQGV 79 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE-EEEEECSS-SEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeE-EEEEECCC-Cccce
Confidence 367888999999999999999999888775 48999999999976 6777899999999998765 55555444 89999
Q ss_pred EEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEE-EEEEcCCeEEEEECCCceEeeecc----
Q 004207 647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRI-LAAAIENYISILDVETQVCRLKLQ---- 721 (768)
Q Consensus 647 afsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~l-lags~Dg~I~IwD~~t~~~~~~~~---- 721 (768)
+|+|+++.++++++.++.|++||+.+++.+..+..+..+.+++|+|++.++ ++++.++.|++||+.++.....+.
T Consensus 80 ~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~ 159 (391)
T 1l0q_A 80 AVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRS 159 (391)
T ss_dssp EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSS
T ss_pred EECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCC
Confidence 999999988888888899999999999999999888889999999999987 566679999999998765543322
Q ss_pred ---------------------eeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEE---CCCcEEEeC
Q 004207 722 ---------------------TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS---HDKCVKIWK 768 (768)
Q Consensus 722 ---------------------~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs---~DG~V~IWD 768 (768)
.|.+||+.+++......+...+.+++|+|++.+|++++ .|+.|++||
T Consensus 160 ~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d 230 (391)
T 1l0q_A 160 PKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMID 230 (391)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEE
T ss_pred cceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEE
Confidence 68999999888877667778899999999999999888 689999996
No 126
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.87 E-value=8.6e-21 Score=204.91 Aligned_cols=160 Identities=10% Similarity=0.095 Sum_probs=130.8
Q ss_pred EEEecCCCCCeEEEEEcC---CCCEEEEEeCCCcEEEEECCCCeEEEEeccCC---CCEEEEEEcCCCCEE---------
Q 004207 548 FQLIPASTSKVESCHFSP---DGKLLATGGHDKKAVLWCTESFTVKSTLEEHT---QWITDVRFSPSLSRL--------- 612 (768)
Q Consensus 548 ~~~l~~H~~~I~sl~fSp---dg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~---~~V~sl~fspdg~~L--------- 612 (768)
+..+.+|...++.++|++ ++.+||+++.|++|+|||+++++++.++.+|. ..|.+++|+|++.++
T Consensus 171 ~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~ 250 (356)
T 2w18_A 171 KENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAK 250 (356)
T ss_dssp EEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC-----
T ss_pred eeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCc
Confidence 445668999999999999 77999999999999999999999999998654 367888999999876
Q ss_pred ---EEEeCCCcEEEEECCCCCeeEEEe-----ecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecC-C
Q 004207 613 ---ATSSADRTVRVWDTENPDYSLRTF-----TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-S 683 (768)
Q Consensus 613 ---aTgs~DgtIrVWDl~t~~~~~~~~-----~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~-~ 683 (768)
++|+.|++|++||..+++. +..+ .+|...+.+.+++ ..++++++.|++|+|||+.+++++.++..+ .
T Consensus 251 w~laSGs~D~tIklWd~~tgk~-l~v~~~~~p~Gh~~~~lsg~~s---g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~ 326 (356)
T 2w18_A 251 ESESLRSPVFQLIVINPKTTLS-VGVMLYCLPPGQAGRFLEGDVK---DHCAAAILTSGTIAIWDLLLGQCTALLPPVSD 326 (356)
T ss_dssp -------CCEEEEEEETTTTEE-EEEEEECCCTTCCCCEEEEEEE---TTEEEEEETTSCEEEEETTTCSEEEEECCC--
T ss_pred ceeeccCCCcEEEEEECCCCEE-EEEEEeeccCCCcceeEccccC---CCEEEEEcCCCcEEEEECCCCcEEEEecCCCC
Confidence 5688899999999998765 3333 3676666555555 347889999999999999999999999854 3
Q ss_pred C-eeEEEEecCCCEEEEEEcCCeEEEEEC
Q 004207 684 G-ATQMRFQPRLGRILAAAIENYISILDV 711 (768)
Q Consensus 684 ~-i~sl~fsp~~~~llags~Dg~I~IwD~ 711 (768)
. +..++|+|++.+|++|+.|++|+|||+
T Consensus 327 ~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 327 QHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred CeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 3 446899999999999999999999985
No 127
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.86 E-value=5.1e-20 Score=213.23 Aligned_cols=242 Identities=10% Similarity=0.056 Sum_probs=193.1
Q ss_pred CCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004207 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (768)
Q Consensus 505 ~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl 584 (768)
.+.++++++.|++|.+|+.... +.+..+..+.. +.+++|+|||++|++++.|++|.+||+
T Consensus 148 ~~~~~vs~~~d~~V~v~D~~t~-------------------~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~ 207 (543)
T 1nir_A 148 PNLFSVTLRDAGQIALVDGDSK-------------------KIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDL 207 (543)
T ss_dssp GGEEEEEEGGGTEEEEEETTTC-------------------CEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEET
T ss_pred CCEEEEEEcCCCeEEEEECCCc-------------------eEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEEC
Confidence 4567888999999999954322 22344443333 899999999999999999999999999
Q ss_pred --CCCeEEEEeccCCCCEEEEEEcC----CCCEEEEEeC-CCcEEEEECCCCCeeEEEeec----------C-CCCeEEE
Q 004207 585 --ESFTVKSTLEEHTQWITDVRFSP----SLSRLATSSA-DRTVRVWDTENPDYSLRTFTG----------H-STTVMSL 646 (768)
Q Consensus 585 --~t~~~~~tl~~h~~~V~sl~fsp----dg~~LaTgs~-DgtIrVWDl~t~~~~~~~~~~----------h-~~~V~sl 646 (768)
.+++++.++.. ...+..++|+| ++++|++++. +++|.|||..+.+. +..+.. | ...+.++
T Consensus 208 ~~~t~~~~~~i~~-g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~-~~~i~~~g~~~~~~~~~~~~~v~~i 285 (543)
T 1nir_A 208 WAKEPTKVAEIKI-GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEP-KQIVSTRGMTVDTQTYHPEPRVAAI 285 (543)
T ss_dssp TSSSCEEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCE-EEEEECCEECSSSCCEESCCCEEEE
T ss_pred cCCCCcEEEEEec-CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecccccc-ceeecccCcccCccccccCCceEEE
Confidence 88999888874 45689999999 9999999885 89999999998775 444443 2 2378999
Q ss_pred EEeCCCCeEEEEEeCCCcEEEEECCCCeeEE--EEecCCCeeEEEEecCCCEEEEEE-cCCeEEEEECCCceEeeec---
Q 004207 647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAG--VFKCQSGATQMRFQPRLGRILAAA-IENYISILDVETQVCRLKL--- 720 (768)
Q Consensus 647 afsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~--~~~~~~~i~sl~fsp~~~~llags-~Dg~I~IwD~~t~~~~~~~--- 720 (768)
.++|++..+++++..++.|.+||+.+.+.+. .+.....+..+.|+|+++++++++ .+++|.+||..++++...+
T Consensus 286 ~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g 365 (543)
T 1nir_A 286 IASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVG 365 (543)
T ss_dssp EECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECS
T ss_pred EECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccC
Confidence 9999999999999999999999998866544 555556688899999999888776 5889999999887543321
Q ss_pred ---------------------------ceeEEeecCC-------CceE-EeccCCCCeeEEEEeCCCCEEEEEE------
Q 004207 721 ---------------------------QTLELWNMTE-------NKTL-TLSAHDKLVSSLAASTVNGMVASAS------ 759 (768)
Q Consensus 721 ---------------------------~~I~iwd~~~-------~~~~-~l~~H~~~I~sla~spdg~~LaSgs------ 759 (768)
.+|.+||..+ .+++ ++..|...+..|+|+|++++|++++
T Consensus 366 ~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~ 445 (543)
T 1nir_A 366 KTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDA 445 (543)
T ss_dssp SSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSH
T ss_pred CCCCCCCCcccCCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCc
Confidence 1677888876 4444 6667888889999999999999987
Q ss_pred -CCCcEEEeC
Q 004207 760 -HDKCVKIWK 768 (768)
Q Consensus 760 -~DG~V~IWD 768 (768)
.+++|.|||
T Consensus 446 ~~~~~v~v~d 455 (543)
T 1nir_A 446 RISQSVAVFD 455 (543)
T ss_dssp HHHTCEEEEE
T ss_pred ccCceEEEEE
Confidence 277999997
No 128
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.86 E-value=5.9e-20 Score=205.08 Aligned_cols=199 Identities=19% Similarity=0.172 Sum_probs=158.4
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEeCCC---cEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEE-EEeCCCc--EE
Q 004207 549 QLIPASTSKVESCHFSPDGKLLATGGHDK---KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADRT--VR 622 (768)
Q Consensus 549 ~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg---~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~La-Tgs~Dgt--Ir 622 (768)
..+.+|...|.+++|+|||++|++++.|+ .|++||+.+++.. .+..|...+.+++|+||+++|+ +++.|+. |+
T Consensus 172 ~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~ 250 (415)
T 2hqs_A 172 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLY 250 (415)
T ss_dssp EEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEE
T ss_pred EEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEE
Confidence 34557888999999999999999999885 9999999998876 5667888999999999999887 6666664 99
Q ss_pred EEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCC--cEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEE
Q 004207 623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAA 700 (768)
Q Consensus 623 VWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg--~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llag 700 (768)
+||+++++ ...+..|...+.+++|+|+|+.+++++..++ .|++||+.+++..........+.+++|+|++.+|+++
T Consensus 251 ~~d~~~~~--~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~ 328 (415)
T 2hqs_A 251 VMDLASGQ--IRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMV 328 (415)
T ss_dssp EEETTTCC--EEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEE
T ss_pred EEECCCCC--EEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEecCCCcccCeEECCCCCEEEEE
Confidence 99998866 3567778889999999999987776665555 6777899887754433344568899999999999888
Q ss_pred EcC---CeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCC---cEEEeC
Q 004207 701 AIE---NYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDK---CVKIWK 768 (768)
Q Consensus 701 s~D---g~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG---~V~IWD 768 (768)
+.+ ..|++||+.++. ...+..|. .+.+++|+|++.+|++++.|+ .|++||
T Consensus 329 ~~~~g~~~i~~~d~~~~~-----------------~~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d 384 (415)
T 2hqs_A 329 SSNGGQQHIAKQDLATGG-----------------VQVLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVS 384 (415)
T ss_dssp EECSSCEEEEEEETTTCC-----------------EEECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEE
T ss_pred ECcCCceEEEEEECCCCC-----------------EEEecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEE
Confidence 865 457777766543 33333454 789999999999999988877 688885
No 129
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.84 E-value=2e-19 Score=185.90 Aligned_cols=222 Identities=14% Similarity=0.096 Sum_probs=163.1
Q ss_pred EeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-Ce
Q 004207 510 DDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES-FT 588 (768)
Q Consensus 510 atGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t-~~ 588 (768)
..++.|+.|++|..... ....+..|...|.+++|+|++++|++++ ++.|++||+.+ ++
T Consensus 16 ~~~~~~~~i~~~d~~~~--------------------~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~ 74 (297)
T 2ojh_A 16 PGGSMRSSIEIFNIRTR--------------------KMRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPS 74 (297)
T ss_dssp --CCCCEEEEEEETTTT--------------------EEEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCS
T ss_pred CCCCcceeEEEEeCCCC--------------------ceeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCC
Confidence 34567888888854322 1223445788999999999999999986 78999999998 88
Q ss_pred EEEEeccC-CCCEEEEEEcCCCCEEEEEeC--CCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcE
Q 004207 589 VKSTLEEH-TQWITDVRFSPSLSRLATSSA--DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 665 (768)
Q Consensus 589 ~~~tl~~h-~~~V~sl~fspdg~~LaTgs~--DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I 665 (768)
....+..| ...|.+++|+|++++|++++. ++.++||.++........+..+ ..+.+++|+|+++.+++++..++.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~ 153 (297)
T 2ojh_A 75 PEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVF 153 (297)
T ss_dssp CEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEECCSS-SSEEEEEECTTSSEEEEEEEETTEE
T ss_pred ceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEEeecC-CCccceEECCCCCEEEEEECCCCce
Confidence 77666565 367899999999999999983 3555665553222224444444 3589999999999888788889999
Q ss_pred EEEEC--CCCeeEEEEecCCCeeEEEEecCCCEEEEEE-cCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCC
Q 004207 666 RYWSI--NNGSCAGVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKL 742 (768)
Q Consensus 666 ~iWDl--~sg~~i~~~~~~~~i~sl~fsp~~~~llags-~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~ 742 (768)
++|++ .++...........+.+++|+|++.++++++ .++.+.+|++.. ..+....+..|...
T Consensus 154 ~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~---------------~~~~~~~~~~~~~~ 218 (297)
T 2ojh_A 154 DIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRV---------------DGSSVERITDSAYG 218 (297)
T ss_dssp EEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET---------------TSSCEEECCCCSEE
T ss_pred EEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECC---------------CCCCcEEEecCCcc
Confidence 99985 4455444344456789999999999888777 478888887642 12223344567778
Q ss_pred eeEEEEeCCCCEEEEEECC-----------CcEEEeC
Q 004207 743 VSSLAASTVNGMVASASHD-----------KCVKIWK 768 (768)
Q Consensus 743 I~sla~spdg~~LaSgs~D-----------G~V~IWD 768 (768)
+.+++|+|++++|++++.+ +.|++||
T Consensus 219 ~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d 255 (297)
T 2ojh_A 219 DWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMD 255 (297)
T ss_dssp EEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEE
T ss_pred cCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEe
Confidence 8999999999999988876 4588885
No 130
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.83 E-value=4.9e-18 Score=180.87 Aligned_cols=242 Identities=11% Similarity=0.097 Sum_probs=177.1
Q ss_pred CCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEE
Q 004207 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH-DKKAVLWC 583 (768)
Q Consensus 505 ~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~-Dg~I~VWd 583 (768)
...++++++.++.|.+|+..... ....+..+...+ +++|+|++++|++++. ++.|.+||
T Consensus 9 ~~~~~v~~~~~~~v~~~d~~~~~-------------------~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d 68 (331)
T 3u4y_A 9 SNFGIVVEQHLRRISFFSTDTLE-------------------ILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIE 68 (331)
T ss_dssp CCEEEEEEGGGTEEEEEETTTCC-------------------EEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEE
T ss_pred CCEEEEEecCCCeEEEEeCcccc-------------------eeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEE
Confidence 35567888899999999653321 122333445556 9999999997766655 88999999
Q ss_pred CCCCeE-EEEeccCCCCEEEEEEcCCCCEEEEEeCCC---cEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEE
Q 004207 584 TESFTV-KSTLEEHTQWITDVRFSPSLSRLATSSADR---TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC 659 (768)
Q Consensus 584 l~t~~~-~~tl~~h~~~V~sl~fspdg~~LaTgs~Dg---tIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSg 659 (768)
+.+++. ...+..+..++.+++|+|++++|+++..++ .|++||+++++. +..+.. ...+.+++|+|+++.+++++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~-~~~~~~-~~~~~~~~~spdg~~l~~~~ 146 (331)
T 3u4y_A 69 TQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKF-ISTIPI-PYDAVGIAISPNGNGLILID 146 (331)
T ss_dssp CSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEE-EEEEEC-CTTEEEEEECTTSSCEEEEE
T ss_pred CCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCe-EEEEEC-CCCccceEECCCCCEEEEEe
Confidence 999887 777777766666699999999999655553 899999998764 455543 45579999999998888887
Q ss_pred eCCCc-EEEEECCCCeeE-----EEEecCCCeeEEEEecCCCEEEEEE-cCCeEEEEECCCceE---eeecc--------
Q 004207 660 DNNSE-IRYWSINNGSCA-----GVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVETQVC---RLKLQ-------- 721 (768)
Q Consensus 660 s~Dg~-I~iWDl~sg~~i-----~~~~~~~~i~sl~fsp~~~~llags-~Dg~I~IwD~~t~~~---~~~~~-------- 721 (768)
..++. |.+|++.....+ ..+.....+..++|+|++.++++++ .++.|.+||+.++.. ...+.
T Consensus 147 ~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~ 226 (331)
T 3u4y_A 147 RSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTI 226 (331)
T ss_dssp ETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCE
T ss_pred cCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceE
Confidence 77788 999998754332 2233456688999999999777666 588999999987765 33322
Q ss_pred -----------------eeEEeecCCCceEEe---ccC----CC---CeeEEEEeCCCCEEEEEEC-CCcEEEeC
Q 004207 722 -----------------TLELWNMTENKTLTL---SAH----DK---LVSSLAASTVNGMVASASH-DKCVKIWK 768 (768)
Q Consensus 722 -----------------~I~iwd~~~~~~~~l---~~H----~~---~I~sla~spdg~~LaSgs~-DG~V~IWD 768 (768)
.|.+||..+++...+ ..+ .. .+..++|+|++++|++++. ++.|+|||
T Consensus 227 ~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d 301 (331)
T 3u4y_A 227 VVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFT 301 (331)
T ss_dssp EECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEE
T ss_pred EECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEE
Confidence 678899888776211 111 11 2355899999998876665 66999996
No 131
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.82 E-value=4.4e-19 Score=198.06 Aligned_cols=200 Identities=10% Similarity=0.054 Sum_probs=156.0
Q ss_pred EEecCCCCCeEEEEEcC--------------CCCEEEEEeCC------CcEEEEECCCCeEEEEeccCCCCEEEEEEcCC
Q 004207 549 QLIPASTSKVESCHFSP--------------DGKLLATGGHD------KKAVLWCTESFTVKSTLEEHTQWITDVRFSPS 608 (768)
Q Consensus 549 ~~l~~H~~~I~sl~fSp--------------dg~~LaSgs~D------g~I~VWdl~t~~~~~tl~~h~~~V~sl~fspd 608 (768)
..+.+|...+.++++++ .+..|+.++.+ +.|++||++. .....+..|...|.+++|+|+
T Consensus 111 ~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spd 189 (415)
T 2hqs_A 111 NSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPD 189 (415)
T ss_dssp EEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTT
T ss_pred eEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCC
Confidence 34567777777777664 25566665554 7999999975 455677789999999999999
Q ss_pred CCEEEEEeCCC---cEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCc--EEEEECCCCeeEEEEecCC
Q 004207 609 LSRLATSSADR---TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE--IRYWSINNGSCAGVFKCQS 683 (768)
Q Consensus 609 g~~LaTgs~Dg---tIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~--I~iWDl~sg~~i~~~~~~~ 683 (768)
+++|++++.|+ .|++||+++++. ..+..|...+.+++|+|+|+.++++++.++. |++||++++++.....+..
T Consensus 190 g~~la~~s~~~~~~~i~~~d~~tg~~--~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~ 267 (415)
T 2hqs_A 190 GSKLAYVTFESGRSALVIQTLANGAV--RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRS 267 (415)
T ss_dssp SSEEEEEECTTSSCEEEEEETTTCCE--EEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSS
T ss_pred CCEEEEEEecCCCcEEEEEECCCCcE--EEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCC
Confidence 99999999885 999999998764 3566788899999999999988878876655 9999999888755444566
Q ss_pred CeeEEEEecCCCEEEEEEcC-C--eEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEEC
Q 004207 684 GATQMRFQPRLGRILAAAIE-N--YISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASH 760 (768)
Q Consensus 684 ~i~sl~fsp~~~~llags~D-g--~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~ 760 (768)
.+.+++|+|++.+|++++.+ + .|++||+.++. ...+..|...+.+++|+|++++|++++.
T Consensus 268 ~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~-----------------~~~l~~~~~~~~~~~~spdG~~l~~~~~ 330 (415)
T 2hqs_A 268 NNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA-----------------PQRITWEGSQNQDADVSSDGKFMVMVSS 330 (415)
T ss_dssp CEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC-----------------CEECCCSSSEEEEEEECTTSSEEEEEEE
T ss_pred cccceEECCCCCEEEEEECCCCCcEEEEEECCCCC-----------------EEEEecCCCcccCeEECCCCCEEEEEEC
Confidence 78999999999999888864 4 46666665543 2333456677899999999999998886
Q ss_pred C---CcEEEeC
Q 004207 761 D---KCVKIWK 768 (768)
Q Consensus 761 D---G~V~IWD 768 (768)
+ ..|++||
T Consensus 331 ~~g~~~i~~~d 341 (415)
T 2hqs_A 331 NGGQQHIAKQD 341 (415)
T ss_dssp CSSCEEEEEEE
T ss_pred cCCceEEEEEE
Confidence 4 5788886
No 132
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.81 E-value=9.9e-18 Score=194.01 Aligned_cols=274 Identities=9% Similarity=0.096 Sum_probs=199.8
Q ss_pred cCCCCCceEEEEecCCCC-------cccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEE
Q 004207 476 HNGASSKSLLMFGSDGMG-------SLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEF 548 (768)
Q Consensus 476 ~s~s~~~~~l~~~~~~~~-------~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~ 548 (768)
.++..+..+.+|...... ........+++.++++++++.|+.|.+|+.... +...+
T Consensus 153 vs~~~d~~V~v~D~~t~~~~~~i~~g~~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~-----------------t~~~~ 215 (543)
T 1nir_A 153 VTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAK-----------------EPTKV 215 (543)
T ss_dssp EEEGGGTEEEEEETTTCCEEEEEECSTTEEEEEECTTSCEEEEEETTSEEEEEETTSS-----------------SCEEE
T ss_pred EEEcCCCeEEEEECCCceEEEEEecCcccceEEECCCCCEEEEECCCCeEEEEECcCC-----------------CCcEE
Confidence 334455666666654321 112335567888999999999999999965200 11233
Q ss_pred EEecCCCCCeEEEEEcC----CCCEEEEEeC-CCcEEEEECCCCeEEEEeccC-----------CCCEEEEEEcCCCC-E
Q 004207 549 QLIPASTSKVESCHFSP----DGKLLATGGH-DKKAVLWCTESFTVKSTLEEH-----------TQWITDVRFSPSLS-R 611 (768)
Q Consensus 549 ~~l~~H~~~I~sl~fSp----dg~~LaSgs~-Dg~I~VWdl~t~~~~~tl~~h-----------~~~V~sl~fspdg~-~ 611 (768)
..+.. ...+.+++|+| ||++|++++. +++|.|||..+++++.++..+ ...+.++.++|++. +
T Consensus 216 ~~i~~-g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~ 294 (543)
T 1nir_A 216 AEIKI-GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEF 294 (543)
T ss_dssp EEEEC-CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEE
T ss_pred EEEec-CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEE
Confidence 44443 44579999999 9999998874 899999999999999887642 23789999999765 5
Q ss_pred EEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecC-----CCee
Q 004207 612 LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-----SGAT 686 (768)
Q Consensus 612 LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~-----~~i~ 686 (768)
+++...+++|.+||+.+.+........+...+.++.|+|+++++++++..+++|.+||+.+++++..+... +...
T Consensus 295 ~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~ 374 (543)
T 1nir_A 295 IVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGA 374 (543)
T ss_dssp EEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCE
T ss_pred EEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCc
Confidence 56677889999999987664332233466778999999999988888888999999999999999888742 1122
Q ss_pred EEEEecCCCEEEEEE--cCCeEEEEECCC-------ceEeeecc--------------------------------eeEE
Q 004207 687 QMRFQPRLGRILAAA--IENYISILDVET-------QVCRLKLQ--------------------------------TLEL 725 (768)
Q Consensus 687 sl~fsp~~~~llags--~Dg~I~IwD~~t-------~~~~~~~~--------------------------------~I~i 725 (768)
.+ ++|+++.+++.+ .|++|.+||+.+ .+++..+. +|.+
T Consensus 375 ~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v 453 (543)
T 1nir_A 375 NF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAV 453 (543)
T ss_dssp EE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEE
T ss_pred cc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEE
Confidence 22 578766665554 479999999987 43322221 7889
Q ss_pred eecCCCceE-Ee---------ccCCCCeeEEEEeCCCCEEEEEE-----CCCcEEEeC
Q 004207 726 WNMTENKTL-TL---------SAHDKLVSSLAASTVNGMVASAS-----HDKCVKIWK 768 (768)
Q Consensus 726 wd~~~~~~~-~l---------~~H~~~I~sla~spdg~~LaSgs-----~DG~V~IWD 768 (768)
||+.+.+.. .. ..+...|..++|+|+|++|+++. .|+.|.|||
T Consensus 454 ~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D 511 (543)
T 1nir_A 454 FDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVD 511 (543)
T ss_dssp EETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEE
T ss_pred EECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEE
Confidence 998877654 32 35567899999999999888763 479999997
No 133
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.81 E-value=6.5e-18 Score=179.52 Aligned_cols=238 Identities=12% Similarity=0.170 Sum_probs=167.6
Q ss_pred CccccCCCCEEEeecCC-CcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeC-C
Q 004207 499 PNQLTDMDRFVDDGSLD-DNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH-D 576 (768)
Q Consensus 499 ~~~l~~~~~~latGS~D-~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~-D 576 (768)
...+++.++++++++.+ +.|.+|..... ...+..+..+..+. .+.+++|+|++++|++++. +
T Consensus 42 ~~~~spdg~~l~~~~~~~~~v~~~~~~~~---------------~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~ 105 (343)
T 1ri6_A 42 PMVVSPDKRYLYVGVRPEFRVLAYRIAPD---------------DGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNA 105 (343)
T ss_dssp CEEECTTSSEEEEEETTTTEEEEEEECTT---------------TCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTT
T ss_pred eEEECCCCCEEEEeecCCCeEEEEEecCC---------------CCceeeccccccCC-CCcEEEEcCCCCEEEEEecCC
Confidence 44566777877777766 89999965311 11123334444444 7899999999998877665 8
Q ss_pred CcEEEEEC---CCCeEEEEeccCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEECCC-CCeeE-E--Eeec-CCCCeEEEE
Q 004207 577 KKAVLWCT---ESFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTEN-PDYSL-R--TFTG-HSTTVMSLD 647 (768)
Q Consensus 577 g~I~VWdl---~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs-~DgtIrVWDl~t-~~~~~-~--~~~~-h~~~V~sla 647 (768)
+.|.+||+ .+.+.+..+..+ ..+.+++|+|++++|++++ .++.|++||+.+ ++... . .+.. ....+.+++
T Consensus 106 ~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (343)
T 1ri6_A 106 GNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMV 184 (343)
T ss_dssp TEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEE
T ss_pred CeEEEEECCCCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEE
Confidence 88999999 444555555544 4589999999999888887 899999999987 44321 1 2222 345788999
Q ss_pred EeCCCCeEEEEEeCCCcEEEEECCC--Cee--EEEEec-------CCCeeEEEEecCCCEEEEEE-cCCeEEEEECCC--
Q 004207 648 FHPSKEDLLCSCDNNSEIRYWSINN--GSC--AGVFKC-------QSGATQMRFQPRLGRILAAA-IENYISILDVET-- 713 (768)
Q Consensus 648 fsp~g~~lLaSgs~Dg~I~iWDl~s--g~~--i~~~~~-------~~~i~sl~fsp~~~~llags-~Dg~I~IwD~~t-- 713 (768)
|+|+++.+++++..++.|.+||+.. ++. ...+.. ...+..++|+|++.+++++. .++.|.+||+..
T Consensus 185 ~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~ 264 (343)
T 1ri6_A 185 FHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDG 264 (343)
T ss_dssp ECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTS
T ss_pred ECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCC
Confidence 9999998888887899999999953 433 222221 12456799999999888666 689999999873
Q ss_pred ceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEE-CCCcEEEeC
Q 004207 714 QVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS-HDKCVKIWK 768 (768)
Q Consensus 714 ~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs-~DG~V~IWD 768 (768)
+.... ...+..+.. +.+++|+|++++|++++ .|+.|.||+
T Consensus 265 ~~~~~--------------~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~ 305 (343)
T 1ri6_A 265 SVLSK--------------EGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYE 305 (343)
T ss_dssp CCEEE--------------EEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEE
T ss_pred CceEE--------------eeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEE
Confidence 21110 011222333 88999999999888888 689999993
No 134
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.80 E-value=2.7e-18 Score=177.34 Aligned_cols=230 Identities=11% Similarity=0.079 Sum_probs=164.3
Q ss_pred ccCccccCCCCEEEeecCCCcEEEeecCC-CCCCCCccccccccCCCceeeEEEEecCC-CCCeEEEEEcCCCCEEEEEe
Q 004207 497 SAPNQLTDMDRFVDDGSLDDNVESFLSPD-DADPRDRVGRSAEVGKGFTFTEFQLIPAS-TSKVESCHFSPDGKLLATGG 574 (768)
Q Consensus 497 ~~~~~l~~~~~~latGS~D~~v~~w~~~~-~~d~~~~~~~~~~~~~~~~~~~~~~l~~H-~~~I~sl~fSpdg~~LaSgs 574 (768)
+....+.+.+.++++++ ++.|.+|.... .. ....+..| ...|.+++|+||+++|++++
T Consensus 44 v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~-------------------~~~~~~~~~~~~~~~~~~spdg~~l~~~~ 103 (297)
T 2ojh_A 44 FEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPS-------------------PEKVDTGFATICNNDHGISPDGALYAISD 103 (297)
T ss_dssp CEEEEECTTSSEEEEEE-TTEEEEEESSSCCS-------------------CEECCCTTCCCBCSCCEECTTSSEEEEEE
T ss_pred eEeeEECCCCCEEEEEc-CCeEEEEeCCCCCC-------------------ceEeccccccccccceEECCCCCEEEEEE
Confidence 34455677788888876 78899996543 21 11222333 46789999999999999998
Q ss_pred --CCCcEEEE--ECCCCeEEEEeccCCCCEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEe
Q 004207 575 --HDKKAVLW--CTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH 649 (768)
Q Consensus 575 --~Dg~I~VW--dl~t~~~~~tl~~h~~~V~sl~fspdg~~La-Tgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafs 649 (768)
.++.+.|| ++.+++ ...+..+ ..+.+++|+|++++|+ +++.|+.++||+++........+..|...+.+++|+
T Consensus 104 ~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s 181 (297)
T 2ojh_A 104 KVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYS 181 (297)
T ss_dssp CTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEEC
T ss_pred eCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceEC
Confidence 33445554 555554 3444444 3489999999999877 788899999999754333356677788899999999
Q ss_pred CCCCeEEEEEeCCCcEEEEECC-CCeeEEEEec-CCCeeEEEEecCCCEEEEEEcC-----------CeEEEEECCCceE
Q 004207 650 PSKEDLLCSCDNNSEIRYWSIN-NGSCAGVFKC-QSGATQMRFQPRLGRILAAAIE-----------NYISILDVETQVC 716 (768)
Q Consensus 650 p~g~~lLaSgs~Dg~I~iWDl~-sg~~i~~~~~-~~~i~sl~fsp~~~~llags~D-----------g~I~IwD~~t~~~ 716 (768)
|++..+++++..++.+++|++. .+..+..+.. ...+..++|+|++.+|++++.+ +.|++||+.++..
T Consensus 182 ~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~ 261 (297)
T 2ojh_A 182 PDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNV 261 (297)
T ss_dssp TTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSC
T ss_pred CCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCc
Confidence 9998777777778999999886 4444454443 4457889999999999888865 3466777665432
Q ss_pred eeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCC
Q 004207 717 RLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDK 762 (768)
Q Consensus 717 ~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG 762 (768)
.. +..+.+|...|.+++|+|++.+|++++.|.
T Consensus 262 ~~--------------~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 262 ET--------------LFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EE--------------EEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred ee--------------eeccCCCCcccccceECCCCCEEEEEEecc
Confidence 10 123346788899999999999998887654
No 135
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.79 E-value=2.9e-18 Score=192.91 Aligned_cols=205 Identities=12% Similarity=0.107 Sum_probs=145.0
Q ss_pred ccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEE----EEeCCC
Q 004207 502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLA----TGGHDK 577 (768)
Q Consensus 502 l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~La----Sgs~Dg 577 (768)
+.....++++++.|+ +++|............ .+............ ..|...|++++|+|++++|+ +|+.|+
T Consensus 44 vs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~v~~l~~spdg~~lav~~~sgs~d~ 118 (434)
T 2oit_A 44 VSNKYGLVFAGGASG-LQIFPTKNLLIQNKPG---DDPNKIVDKVQGLL-VPMKFPIHHLALSCDNLTLSACMMSSEYGS 118 (434)
T ss_dssp EETTTTEEEEEETTE-EEEEEHHHHCCCCCTT---CCTTCEEECCCCEE-ECCSSCEEEEEECTTSCEEEEEEEETTTEE
T ss_pred EecCCCEEEEECCCE-EEEEEchHhhhhcccc---cCcccccccCcccc-ccCCCcccEEEEcCCCCEEEEEEeccCCCc
Confidence 344567888888887 8887332110000000 00000000011111 24677899999999999999 788899
Q ss_pred cEEEEECCCC--------e---EEEEeccCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEE
Q 004207 578 KAVLWCTESF--------T---VKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS 645 (768)
Q Consensus 578 ~I~VWdl~t~--------~---~~~tl~~h~~~V~sl~fspd-g~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~s 645 (768)
.|+|||+.+. + .+..+.+|...|.+|+|+|+ +.+|++++.||+|+|||++++.. +....+|...|.+
T Consensus 119 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~-~~~~~~~~~~v~~ 197 (434)
T 2oit_A 119 IIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVK-VCATLPSTVAVTS 197 (434)
T ss_dssp EEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEE-EEEEECGGGCEEE
T ss_pred eEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcc-eeeccCCCCceeE
Confidence 9999998654 2 24556779999999999997 88999999999999999998744 5556678899999
Q ss_pred EEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecC--------CCeeEEEEecCCCEEEEEE-cCC------eEEEEE
Q 004207 646 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ--------SGATQMRFQPRLGRILAAA-IEN------YISILD 710 (768)
Q Consensus 646 lafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~--------~~i~sl~fsp~~~~llags-~Dg------~I~IwD 710 (768)
++|+|+|. +|++|+.||.|++||++ +.....+..+ ..+.+++|++++.++++.+ .+| .+++||
T Consensus 198 v~wspdg~-~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~ 275 (434)
T 2oit_A 198 VCWSPKGK-QLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMAL 275 (434)
T ss_dssp EEECTTSS-CEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEE
T ss_pred EEEcCCCC-EEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEE
Confidence 99999977 55688899999999998 5655555431 1688999999866655433 343 388999
Q ss_pred CCCc
Q 004207 711 VETQ 714 (768)
Q Consensus 711 ~~t~ 714 (768)
++..
T Consensus 276 l~~~ 279 (434)
T 2oit_A 276 LPKK 279 (434)
T ss_dssp CCCT
T ss_pred eccC
Confidence 8764
No 136
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.79 E-value=2.4e-17 Score=174.66 Aligned_cols=238 Identities=14% Similarity=0.111 Sum_probs=163.6
Q ss_pred CEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEec-CCCC-CeEEEEEcCCCCEE-EEEeCCCcEEEEE
Q 004207 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP-ASTS-KVESCHFSPDGKLL-ATGGHDKKAVLWC 583 (768)
Q Consensus 507 ~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~-~H~~-~I~sl~fSpdg~~L-aSgs~Dg~I~VWd 583 (768)
.++++++.++.|.+|+.... +.+..+. ++.. .+.+++|+|+++++ +++..++.|.+||
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~-------------------~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d 62 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKM-------------------AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKID 62 (337)
T ss_dssp EEEEEEETTTEEEEEETTTT-------------------EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEE
T ss_pred cEEEEcCCCCeEEEEECCCC-------------------cEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEE
Confidence 47888999999999964322 1122222 2222 47889999999865 4556678999999
Q ss_pred CCCCeEEEEeccC-----CCCEEEEEEcCCCCEEEEEe------------CCCcEEEEECCCCCeeEEEeecCCCCeEEE
Q 004207 584 TESFTVKSTLEEH-----TQWITDVRFSPSLSRLATSS------------ADRTVRVWDTENPDYSLRTFTGHSTTVMSL 646 (768)
Q Consensus 584 l~t~~~~~tl~~h-----~~~V~sl~fspdg~~LaTgs------------~DgtIrVWDl~t~~~~~~~~~~h~~~V~sl 646 (768)
+.+++.+..+... ...+.+++|+|++++|++++ .++.|++||+.+++. +..+.. ...+.++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~-~~~~~~-~~~~~~~ 140 (337)
T 1pby_B 63 LVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSR-RKAFEA-PRQITML 140 (337)
T ss_dssp TTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEE-EEEEEC-CSSCCCE
T ss_pred CCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcE-EEEEeC-CCCccee
Confidence 9999888766532 12577899999999998886 579999999987654 444443 4568889
Q ss_pred EEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCC----------------------
Q 004207 647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN---------------------- 704 (768)
Q Consensus 647 afsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg---------------------- 704 (768)
+|+|+++.++++ ++.|.+||+.+++.+..+........+.|+|++..+++++..+
T Consensus 141 ~~s~dg~~l~~~---~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (337)
T 1pby_B 141 AWARDGSKLYGL---GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAY 217 (337)
T ss_dssp EECTTSSCEEEE---SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGE
T ss_pred EECCCCCEEEEe---CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeecccccccccccccc
Confidence 999999876655 6789999999998877665433112235566655443333211
Q ss_pred --eEEEEECCCceEee------------------------ecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEE
Q 004207 705 --YISILDVETQVCRL------------------------KLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASA 758 (768)
Q Consensus 705 --~I~IwD~~t~~~~~------------------------~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSg 758 (768)
.|.+||+.+++... ....|.+||+.+++..........+.+++|+|++++|+++
T Consensus 218 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~ 297 (337)
T 1pby_B 218 RTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLG 297 (337)
T ss_dssp EEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEEESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEE
T ss_pred ccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEeCCeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEE
Confidence 34566655543210 0014666666665554433344568899999999999999
Q ss_pred ECCCcEEEeC
Q 004207 759 SHDKCVKIWK 768 (768)
Q Consensus 759 s~DG~V~IWD 768 (768)
+.|+.|++||
T Consensus 298 ~~~~~i~v~d 307 (337)
T 1pby_B 298 GALGDLAAYD 307 (337)
T ss_dssp SBSSEEEEEE
T ss_pred cCCCcEEEEE
Confidence 9999999996
No 137
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.78 E-value=1.4e-16 Score=170.33 Aligned_cols=185 Identities=12% Similarity=0.124 Sum_probs=151.4
Q ss_pred eEEEEEcCCCCEEEEEe--CCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEE
Q 004207 558 VESCHFSPDGKLLATGG--HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 635 (768)
Q Consensus 558 I~sl~fSpdg~~LaSgs--~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~ 635 (768)
+.+++|+|+++++++++ .++.|.+||..+++.+..+..+...+.+++|+|++++|++++.++.|.+||+.+++. +..
T Consensus 143 ~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~-~~~ 221 (353)
T 3vgz_A 143 PRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKI-LSR 221 (353)
T ss_dssp EEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEE-EEE
T ss_pred CceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeE-EEE
Confidence 78999999999877776 478899999999999988876666789999999999999999999999999998765 433
Q ss_pred eec----CCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEE-cCCeEEEEE
Q 004207 636 FTG----HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA-IENYISILD 710 (768)
Q Consensus 636 ~~~----h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags-~Dg~I~IwD 710 (768)
+.. +...+.+++|+|+++.+++++..++.|.+||+.+++.+..+..... ..++|+|++++++++. .++.|.+||
T Consensus 222 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~s~dg~~l~v~~~~~~~v~~~d 300 (353)
T 3vgz_A 222 KKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPES-LAVLFNPARNEAYVTHRQAGKVSVID 300 (353)
T ss_dssp EECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSC-CCEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC-ceEEECCCCCEEEEEECCCCeEEEEE
Confidence 332 4556889999999998887877789999999999999888876544 6699999999877777 589999999
Q ss_pred CCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECC
Q 004207 711 VETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD 761 (768)
Q Consensus 711 ~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~D 761 (768)
..+++....+ .....+.+++|+|++++|+++..+
T Consensus 301 ~~~~~~~~~~-----------------~~~~~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 301 AKSYKVVKTF-----------------DTPTHPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp TTTTEEEEEE-----------------ECCSEEEEEEECTTSCEEEEEEEC
T ss_pred CCCCeEEEEE-----------------ecCCCCCeEEEcCCCCEEEEEEcc
Confidence 9887653321 122357899999999977776655
No 138
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.78 E-value=4.8e-17 Score=172.82 Aligned_cols=233 Identities=11% Similarity=0.129 Sum_probs=162.0
Q ss_pred EEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-CcEEEEECC-
Q 004207 508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD-KKAVLWCTE- 585 (768)
Q Consensus 508 ~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~D-g~I~VWdl~- 585 (768)
++++++.|+.|++|...... .+..+.. ..|...+.+++|+|++++|++++.+ +.|.+|+++
T Consensus 7 l~~~~~~~~~v~~~~~~~~~----------------~~~~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~ 69 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEG----------------ALTLTQV-VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAP 69 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTS----------------CEEEEEE-EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred EEEeCCCCCeEEEEEECCCC----------------cEEEeee-EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecC
Confidence 44555789999999653211 1112222 2466779999999999998888886 999999997
Q ss_pred -CCe--EEEEeccCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEECCCCC--eeEEEeecCCCCeEEEEEeCCCCeEEEEE
Q 004207 586 -SFT--VKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSC 659 (768)
Q Consensus 586 -t~~--~~~tl~~h~~~V~sl~fspdg~~LaTgs~-DgtIrVWDl~t~~--~~~~~~~~h~~~V~slafsp~g~~lLaSg 659 (768)
+++ .+..+..+. .+.+++|+|++++|++++. ++.|++||++.+. ..+..+. ....+.+++|+|+++.+++++
T Consensus 70 ~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~ 147 (343)
T 1ri6_A 70 DDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE-GLDGCHSANISPDNRTLWVPA 147 (343)
T ss_dssp TTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC-CCTTBCCCEECTTSSEEEEEE
T ss_pred CCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccccc-CCCCceEEEECCCCCEEEEec
Confidence 544 344555444 7899999999998877765 8899999995322 2233343 334689999999998787666
Q ss_pred eCCCcEEEEECCC-CeeEEE----Ee--cCCCeeEEEEecCCCEEEEEE-cCCeEEEEECCC--ceEeeecceeEEee-c
Q 004207 660 DNNSEIRYWSINN-GSCAGV----FK--CQSGATQMRFQPRLGRILAAA-IENYISILDVET--QVCRLKLQTLELWN-M 728 (768)
Q Consensus 660 s~Dg~I~iWDl~s-g~~i~~----~~--~~~~i~sl~fsp~~~~llags-~Dg~I~IwD~~t--~~~~~~~~~I~iwd-~ 728 (768)
..++.|++||+.+ ++.... +. ....+..++|+|++.++++++ .++.|.+||+.. +.... +.... +
T Consensus 148 ~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~----~~~~~~~ 223 (343)
T 1ri6_A 148 LKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIEC----VQTLDMM 223 (343)
T ss_dssp GGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEE----EEEEECS
T ss_pred CCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEE----Eeecccc
Confidence 5899999999987 654332 22 244688899999999887766 789999999954 22110 11100 0
Q ss_pred CCCceEEeccCCCCeeEEEEeCCCCEEEEEE-CCCcEEEeC
Q 004207 729 TENKTLTLSAHDKLVSSLAASTVNGMVASAS-HDKCVKIWK 768 (768)
Q Consensus 729 ~~~~~~~l~~H~~~I~sla~spdg~~LaSgs-~DG~V~IWD 768 (768)
..+ ......+.+++|+|++++|++++ .|+.|++||
T Consensus 224 ~~~-----~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d 259 (343)
T 1ri6_A 224 PEN-----FSDTRWAADIHITPDGRHLYACDRTASLITVFS 259 (343)
T ss_dssp CTT-----CCSCCCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred Ccc-----ccccCCccceEECCCCCEEEEEecCCCEEEEEE
Confidence 000 01234577899999998887554 789999996
No 139
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.78 E-value=1.2e-18 Score=196.14 Aligned_cols=202 Identities=10% Similarity=0.064 Sum_probs=150.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC-----------eEE-----EEeccCCCCEEEEEEcCCCCEEE----E
Q 004207 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-----------TVK-----STLEEHTQWITDVRFSPSLSRLA----T 614 (768)
Q Consensus 555 ~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~-----------~~~-----~tl~~h~~~V~sl~fspdg~~La----T 614 (768)
...+.++++++++.+|++++.|+ |+||+.... ... ..+ .+...|++++|+|++++|+ +
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~spdg~~lav~~~s 113 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLV-PMKFPIHHLALSCDNLTLSACMMS 113 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEE-CCSSCEEEEEECTTSCEEEEEEEE
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccc-cCCCcccEEEEcCCCCEEEEEEec
Confidence 34588999999999999999988 888864311 111 112 3566799999999999999 7
Q ss_pred EeCCCcEEEEECCCC-----C-----eeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEe-cCC
Q 004207 615 SSADRTVRVWDTENP-----D-----YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQS 683 (768)
Q Consensus 615 gs~DgtIrVWDl~t~-----~-----~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~-~~~ 683 (768)
++.|++|+|||+++. . ..+..+.+|...|.+|+|+|+...+|++++.||+|++||++++..+.... +..
T Consensus 114 gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~ 193 (434)
T 2oit_A 114 SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTV 193 (434)
T ss_dssp TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGG
T ss_pred cCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCC
Confidence 888999999998653 1 12456677999999999999866788899999999999999887665444 356
Q ss_pred CeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEE-ECCC
Q 004207 684 GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASA-SHDK 762 (768)
Q Consensus 684 ~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSg-s~DG 762 (768)
.+.+++|+|++.+|++++.|+.|++||++ +.....+. .... ....|...|.+++|++++.++++. +.||
T Consensus 194 ~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~------~~~~---~~~~~~~~v~~v~w~~~~~~l~~~~~~dg 263 (434)
T 2oit_A 194 AVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIP------CPPF---YESDHPVRVLDVLWIGTYVFAIVYAAADG 263 (434)
T ss_dssp CEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEEC------CCTT---CCTTSCEEEEEEEEEETTEEEEEEEETTC
T ss_pred ceeEEEEcCCCCEEEEEcCCCcEEEEccC-Cccccccc------CCcc---cCCCCceeEEEEEEecCceEEEEEccCCC
Confidence 89999999999999999999999999998 32211110 0000 001344579999999988777553 3443
Q ss_pred c------EEEeC
Q 004207 763 C------VKIWK 768 (768)
Q Consensus 763 ~------V~IWD 768 (768)
. +++|+
T Consensus 264 ~~~~~~~v~i~~ 275 (434)
T 2oit_A 264 TLETSPDVVMAL 275 (434)
T ss_dssp CSSSCCEEEEEE
T ss_pred ccCCCCceEEEE
Confidence 3 77774
No 140
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.77 E-value=3.9e-17 Score=174.18 Aligned_cols=224 Identities=11% Similarity=0.066 Sum_probs=160.1
Q ss_pred ccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCC-CCeEEEEEcCCCCEEE-EEeCCCcE
Q 004207 502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST-SKVESCHFSPDGKLLA-TGGHDKKA 579 (768)
Q Consensus 502 l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~-~~I~sl~fSpdg~~La-Sgs~Dg~I 579 (768)
+...+.++++++.++.|.+|+.... +.+..+..+. ..+.+++|+|++++++ ++..++.|
T Consensus 7 ~~~~~~~~v~~~~~~~v~~~d~~~~-------------------~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i 67 (349)
T 1jmx_B 7 LKAGHEYMIVTNYPNNLHVVDVASD-------------------TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDI 67 (349)
T ss_dssp CCTTCEEEEEEETTTEEEEEETTTT-------------------EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEE
T ss_pred ccCCCEEEEEeCCCCeEEEEECCCC-------------------cEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcE
Confidence 4556778899999999999965322 1122222222 2578899999998655 55578999
Q ss_pred EEEECCCCeEEEEeccCC------CCEEEEEEcCCCCEEEEEeCC------------CcEEEEECCCCCe--eEEEeecC
Q 004207 580 VLWCTESFTVKSTLEEHT------QWITDVRFSPSLSRLATSSAD------------RTVRVWDTENPDY--SLRTFTGH 639 (768)
Q Consensus 580 ~VWdl~t~~~~~tl~~h~------~~V~sl~fspdg~~LaTgs~D------------gtIrVWDl~t~~~--~~~~~~~h 639 (768)
.+||+.+++.+..+..+. ..+.+++|+|++++|++++.+ +.|.+||+.+++. .+..+. +
T Consensus 68 ~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~ 146 (349)
T 1jmx_B 68 YGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-M 146 (349)
T ss_dssp EEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-C
T ss_pred EEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-C
Confidence 999999999887775432 237889999999999998865 8999999987432 123333 3
Q ss_pred CCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCC------------------------------------
Q 004207 640 STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS------------------------------------ 683 (768)
Q Consensus 640 ~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~------------------------------------ 683 (768)
...+.+++|+|+++ +++ ++ +.|++||+.+++.+..+....
T Consensus 147 ~~~~~~~~~s~dg~-l~~-~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 222 (349)
T 1jmx_B 147 PRQVYLMRAADDGS-LYV-AG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDD 222 (349)
T ss_dssp CSSCCCEEECTTSC-EEE-ES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC---
T ss_pred CCcccceeECCCCc-EEE-cc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCC
Confidence 44689999999998 665 43 349999999988777665331
Q ss_pred ---------------------------------CeeEEEEec-CCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecC
Q 004207 684 ---------------------------------GATQMRFQP-RLGRILAAAIENYISILDVETQVCRLKLQTLELWNMT 729 (768)
Q Consensus 684 ---------------------------------~i~sl~fsp-~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~ 729 (768)
.+..++|+| ++.+++++ ++.|.+||+.+++....
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~---------- 290 (349)
T 1jmx_B 223 KQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKA---------- 290 (349)
T ss_dssp ----CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEE----------
T ss_pred cCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEE----------
Confidence 223455667 77776666 67777777766544221
Q ss_pred CCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 730 ENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 730 ~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
......+.+++|+|++++|++++.++.|++||
T Consensus 291 -------~~~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d 322 (349)
T 1jmx_B 291 -------ANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFN 322 (349)
T ss_dssp -------EECSSCCCEEEECSSSSCEEEESBSSEEEEEE
T ss_pred -------EcCCCCccceEECCCCCEEEEecCCCeEEEEe
Confidence 11233478999999999888888899999996
No 141
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.77 E-value=1.3e-16 Score=171.64 Aligned_cols=238 Identities=13% Similarity=0.143 Sum_probs=161.8
Q ss_pred ccccCCCCEEEeecC--CCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEe-CC
Q 004207 500 NQLTDMDRFVDDGSL--DDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG-HD 576 (768)
Q Consensus 500 ~~l~~~~~~latGS~--D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs-~D 576 (768)
..+++.+++++++.. ++.|.+|.... .....+..+..+...+.+++|+|||++|++++ .+
T Consensus 45 ~a~spdg~l~~~~~~~~~~~v~~~~~~~-----------------g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~ 107 (347)
T 3hfq_A 45 LALSAKDCLYSVDKEDDEGGIAAWQIDG-----------------QTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHK 107 (347)
T ss_dssp EEECTTCEEEEEEEETTEEEEEEEEEET-----------------TEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTT
T ss_pred EEEccCCeEEEEEecCCCceEEEEEecC-----------------CcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCC
Confidence 344555554333332 57788885421 12234444456677899999999999888887 67
Q ss_pred CcEEEEECC-CC--eEEEEecc---------CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC-CCCee-EEEeec-CCC
Q 004207 577 KKAVLWCTE-SF--TVKSTLEE---------HTQWITDVRFSPSLSRLATSSADRTVRVWDTE-NPDYS-LRTFTG-HST 641 (768)
Q Consensus 577 g~I~VWdl~-t~--~~~~tl~~---------h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~-t~~~~-~~~~~~-h~~ 641 (768)
+.|.+|++. ++ +.+..+.. +...+.+++|+|+++++++...++.|++||+. ++... +..+.. ...
T Consensus 108 ~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~ 187 (347)
T 3hfq_A 108 GTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGF 187 (347)
T ss_dssp TEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTC
T ss_pred CEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCC
Confidence 899999996 22 33333322 12348899999999966666678899999998 44321 122222 234
Q ss_pred CeEEEEEeCCCCeEEEEEeCCCcEEEEECCC--CeeE--EEEec-C------CCeeEEEEecCCCEEEEE-EcCCeEEEE
Q 004207 642 TVMSLDFHPSKEDLLCSCDNNSEIRYWSINN--GSCA--GVFKC-Q------SGATQMRFQPRLGRILAA-AIENYISIL 709 (768)
Q Consensus 642 ~V~slafsp~g~~lLaSgs~Dg~I~iWDl~s--g~~i--~~~~~-~------~~i~sl~fsp~~~~llag-s~Dg~I~Iw 709 (768)
.+..++|+|+|+.+++++..++.|.+|++.. ++.. ..+.. . ..+..++|+|++.+|+++ ..++.|.+|
T Consensus 188 ~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~ 267 (347)
T 3hfq_A 188 GPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVF 267 (347)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEE
T ss_pred CCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEE
Confidence 6788999999998888888899999999874 5432 22222 1 337789999999987555 458999999
Q ss_pred ECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECC-CcEEEe
Q 004207 710 DVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD-KCVKIW 767 (768)
Q Consensus 710 D~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~D-G~V~IW 767 (768)
|+........ ...+..+...+.+++|+|++++|++++.+ +.|.||
T Consensus 268 ~~~~~g~~~~-------------~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~ 313 (347)
T 3hfq_A 268 AVTADGHLTL-------------IQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLY 313 (347)
T ss_dssp EECGGGCEEE-------------EEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEE
T ss_pred EECCCCcEEE-------------eEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEE
Confidence 9863211100 11233455668899999999998888764 899999
No 142
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.75 E-value=2.1e-16 Score=169.09 Aligned_cols=210 Identities=8% Similarity=0.007 Sum_probs=163.4
Q ss_pred CCeEEEEEcCCCCEEEEEeC-------CCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEE-eCCCcEEEEECC
Q 004207 556 SKVESCHFSPDGKLLATGGH-------DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTE 627 (768)
Q Consensus 556 ~~I~sl~fSpdg~~LaSgs~-------Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTg-s~DgtIrVWDl~ 627 (768)
..+..++|+|++++|++++. ++.|.+||..+++.+..+... ..+.+++|+|++++++++ ..++.|.+||+.
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~ 119 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND-LKPFGATINNTTQTLWFGNTVNSAVTAIDAK 119 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES-SCCCSEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC-CCcceEEECCCCCEEEEEecCCCEEEEEeCC
Confidence 45889999999998888774 568999999999988887643 447889999999965554 557999999999
Q ss_pred CCCeeEEEeecCCC---------CeEEEEEeCCCCeEEEEE-eCCCcEEEEECCCCeeEEEEe-cCCCeeEEEEecCCCE
Q 004207 628 NPDYSLRTFTGHST---------TVMSLDFHPSKEDLLCSC-DNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGR 696 (768)
Q Consensus 628 t~~~~~~~~~~h~~---------~V~slafsp~g~~lLaSg-s~Dg~I~iWDl~sg~~i~~~~-~~~~i~sl~fsp~~~~ 696 (768)
+++. +..+..+.. .+.+++|+|+++.+++++ +.++.|.+||+.+++.+..+. ....+..++|+|++++
T Consensus 120 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~ 198 (353)
T 3vgz_A 120 TGEV-KGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKR 198 (353)
T ss_dssp TCCE-EEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTE
T ss_pred CCee-EEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCE
Confidence 8775 444444332 278899999999777766 458899999999999998887 4555889999999999
Q ss_pred EEEEEcCCeEEEEECCCceEeeecc------------------------------eeEEeecCCCceEEeccCCCCeeEE
Q 004207 697 ILAAAIENYISILDVETQVCRLKLQ------------------------------TLELWNMTENKTLTLSAHDKLVSSL 746 (768)
Q Consensus 697 llags~Dg~I~IwD~~t~~~~~~~~------------------------------~I~iwd~~~~~~~~l~~H~~~I~sl 746 (768)
+++++.++.|.+||+.+++....+. .|.+||..+++......... ..++
T Consensus 199 l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~ 277 (353)
T 3vgz_A 199 LYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE-SLAV 277 (353)
T ss_dssp EEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS-CCCE
T ss_pred EEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC-CceE
Confidence 9999999999999998775432211 67778887776653322222 3579
Q ss_pred EEeCCCCEEEEEE-CCCcEEEeC
Q 004207 747 AASTVNGMVASAS-HDKCVKIWK 768 (768)
Q Consensus 747 a~spdg~~LaSgs-~DG~V~IWD 768 (768)
+|+|++++|++++ .++.|.+||
T Consensus 278 ~~s~dg~~l~v~~~~~~~v~~~d 300 (353)
T 3vgz_A 278 LFNPARNEAYVTHRQAGKVSVID 300 (353)
T ss_dssp EEETTTTEEEEEETTTTEEEEEE
T ss_pred EECCCCCEEEEEECCCCeEEEEE
Confidence 9999999766665 689999996
No 143
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.75 E-value=3.7e-17 Score=194.43 Aligned_cols=209 Identities=14% Similarity=0.125 Sum_probs=163.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeC-CC-----cEEEEECCCCeEEEEeccCCC------------------------CEEEEE
Q 004207 555 TSKVESCHFSPDGKLLATGGH-DK-----KAVLWCTESFTVKSTLEEHTQ------------------------WITDVR 604 (768)
Q Consensus 555 ~~~I~sl~fSpdg~~LaSgs~-Dg-----~I~VWdl~t~~~~~tl~~h~~------------------------~V~sl~ 604 (768)
...|.+++|||||++|++++. |+ .|++||+.+++....+..+.. .|.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 456999999999999999998 88 899999999988777655433 378999
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCC--eeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecC
Q 004207 605 FSPSLSRLATSSADRTVRVWDTENPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ 682 (768)
Q Consensus 605 fspdg~~LaTgs~DgtIrVWDl~t~~--~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~ 682 (768)
|+|||++|++++. +.|++||+.++. . +..+..|...+.+++|+|+|+.+++ ++ ++.|++||+.+++........
T Consensus 116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~-~~~l~~~~~~~~~~~~SPDG~~la~-~~-~~~i~~~d~~~g~~~~~~~~~ 191 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GELYLYDLKQEGKAA-VRQLTHGEGFATDAKLSPKGGFVSF-IR-GRNLWVIDLASGRQMQLTADG 191 (741)
T ss_dssp ECTTSSEEEEEET-TEEEEEESSSCSTTS-CCBCCCSSSCEEEEEECTTSSEEEE-EE-TTEEEEEETTTTEEEECCCCC
T ss_pred ECCCCCEEEEEeC-CcEEEEECCCCCcce-EEEcccCCcccccccCCCCCCEEEE-Ee-CCcEEEEecCCCCEEEeccCC
Confidence 9999999999886 999999999862 2 4456678888999999999986654 44 569999999988776554432
Q ss_pred CC-----------------eeEEEEecCCCEEEEEEcCC---------------------------------eEEEEECC
Q 004207 683 SG-----------------ATQMRFQPRLGRILAAAIEN---------------------------------YISILDVE 712 (768)
Q Consensus 683 ~~-----------------i~sl~fsp~~~~llags~Dg---------------------------------~I~IwD~~ 712 (768)
.. +..++|+|++.+|++++.|+ .|.+||+.
T Consensus 192 ~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~ 271 (741)
T 2ecf_A 192 STTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPA 271 (741)
T ss_dssp CSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSS
T ss_pred ccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECC
Confidence 22 47799999999999988765 78899987
Q ss_pred C-ceEeee-------------------------------cceeEEeecCCCceEEec-cCCC----CeeEEEEeCCCCEE
Q 004207 713 T-QVCRLK-------------------------------LQTLELWNMTENKTLTLS-AHDK----LVSSLAASTVNGMV 755 (768)
Q Consensus 713 t-~~~~~~-------------------------------~~~I~iwd~~~~~~~~l~-~H~~----~I~sla~spdg~~L 755 (768)
+ +..... ...|.+||..+++...+. .|.. .+.+++|+|+|++|
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~ 351 (741)
T 2ecf_A 272 EQAQTQWIDLGKEQDIYLARVNWRDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSIL 351 (741)
T ss_dssp TTCCCEEECCCSCSSEEEEEEEEEETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEE
T ss_pred CCCceEEecCCCCcceEEEEEEeCCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEE
Confidence 7 432110 125778888887765433 3322 45689999999999
Q ss_pred EEEECCCcEEEe
Q 004207 756 ASASHDKCVKIW 767 (768)
Q Consensus 756 aSgs~DG~V~IW 767 (768)
++++.||.++||
T Consensus 352 ~~~~~~g~~~l~ 363 (741)
T 2ecf_A 352 WSSERTGFQHLY 363 (741)
T ss_dssp EEECTTSSCEEE
T ss_pred EEecCCCccEEE
Confidence 999999988887
No 144
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.75 E-value=1.1e-16 Score=190.39 Aligned_cols=207 Identities=13% Similarity=0.092 Sum_probs=150.8
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe--EEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEE
Q 004207 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 634 (768)
Q Consensus 557 ~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~--~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~ 634 (768)
.|.+++|||||++|++++. +.|++||+.++. ....+..|...+.+++|+|||++|++++ ++.|++||+.+++. ..
T Consensus 110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~-~~ 186 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQ-MQ 186 (741)
T ss_dssp ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEE-EE
T ss_pred CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCE-EE
Confidence 4889999999999999886 899999999872 3445667888899999999999999987 46899999987653 33
Q ss_pred EeecCCCC----------------eEEEEEeCCCCeEEEEEeCCC--------------------------------cEE
Q 004207 635 TFTGHSTT----------------VMSLDFHPSKEDLLCSCDNNS--------------------------------EIR 666 (768)
Q Consensus 635 ~~~~h~~~----------------V~slafsp~g~~lLaSgs~Dg--------------------------------~I~ 666 (768)
....+... +.+++|+|+|+.++++...++ .|+
T Consensus 187 ~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~ 266 (741)
T 2ecf_A 187 LTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLG 266 (741)
T ss_dssp CCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEE
T ss_pred eccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEE
Confidence 33333322 478999999987775543221 788
Q ss_pred EEECCC-CeeEEEEe---cCCCeeEEEEecCCCEEEEEEc-----CCeEEEEECCCceEeeec-----------------
Q 004207 667 YWSINN-GSCAGVFK---CQSGATQMRFQPRLGRILAAAI-----ENYISILDVETQVCRLKL----------------- 720 (768)
Q Consensus 667 iWDl~s-g~~i~~~~---~~~~i~sl~fsp~~~~llags~-----Dg~I~IwD~~t~~~~~~~----------------- 720 (768)
+||+.+ +++..... +...+..++| |++.+|++++. +..|++||+.++.+....
T Consensus 267 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~s 345 (741)
T 2ecf_A 267 VISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFL 345 (741)
T ss_dssp EECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEEC
T ss_pred EEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEEC
Confidence 999998 87655432 2345789999 99999887765 467999998876432110
Q ss_pred ------------ceeEEeec--CCCceEEeccCCCCeeEE-EEeCCCCEEEEE-ECCC--cEEEeC
Q 004207 721 ------------QTLELWNM--TENKTLTLSAHDKLVSSL-AASTVNGMVASA-SHDK--CVKIWK 768 (768)
Q Consensus 721 ------------~~I~iwd~--~~~~~~~l~~H~~~I~sl-a~spdg~~LaSg-s~DG--~V~IWD 768 (768)
..+++|.+ ... ...+..|...|.++ +|+|+++.|+.. +.|+ .++||+
T Consensus 346 pdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~ 410 (741)
T 2ecf_A 346 DDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYA 410 (741)
T ss_dssp TTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEE
T ss_pred CCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEE
Confidence 02344543 334 55666777888887 599999877554 4455 888884
No 145
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.75 E-value=1.7e-16 Score=168.89 Aligned_cols=206 Identities=9% Similarity=0.143 Sum_probs=156.7
Q ss_pred EEEcCCCCE-EEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEECCCCCeeEEEeec
Q 004207 561 CHFSPDGKL-LATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDYSLRTFTG 638 (768)
Q Consensus 561 l~fSpdg~~-LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~-DgtIrVWDl~t~~~~~~~~~~ 638 (768)
..|.+++.+ +++++.++.|.+||+.+++.+..+..+...+ +++|+|++++|++++. ++.|++||+.+++.....+..
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~ 81 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE 81 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc
Confidence 345565554 7788889999999999999988887776677 9999999997776666 889999999987753556666
Q ss_pred CCCCeEEEEEeCCCCeEEEEEeCC-C--cEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEE-cCCe-EEEEECCC
Q 004207 639 HSTTVMSLDFHPSKEDLLCSCDNN-S--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA-IENY-ISILDVET 713 (768)
Q Consensus 639 h~~~V~slafsp~g~~lLaSgs~D-g--~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags-~Dg~-I~IwD~~t 713 (768)
+..++.+++|+|+++.++ ++..+ + .|.+||+.+++.+..+........++|+|++.++++++ .++. |.+|++..
T Consensus 82 ~~~~~~~~~~s~dg~~l~-~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~ 160 (331)
T 3u4y_A 82 GQSSMADVDITPDDQFAV-TVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDA 160 (331)
T ss_dssp CSSCCCCEEECTTSSEEE-ECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECT
T ss_pred CCCCccceEECCCCCEEE-EecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECC
Confidence 666666699999998777 55444 3 89999999999999888878889999999998776665 4577 99999754
Q ss_pred ceEe-----ee-------------------------cceeEEeecCCCce---EEeccCCCCeeEEEEeCCCCEEEEEE-
Q 004207 714 QVCR-----LK-------------------------LQTLELWNMTENKT---LTLSAHDKLVSSLAASTVNGMVASAS- 759 (768)
Q Consensus 714 ~~~~-----~~-------------------------~~~I~iwd~~~~~~---~~l~~H~~~I~sla~spdg~~LaSgs- 759 (768)
.... .. ...|.+||+.+++. .....+...+.+++|+|++++|++++
T Consensus 161 ~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~ 240 (331)
T 3u4y_A 161 DGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTE 240 (331)
T ss_dssp TCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEECS
T ss_pred CCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEEEEc
Confidence 2111 00 01688999988776 54334556788999999999776665
Q ss_pred CCCcEEEeC
Q 004207 760 HDKCVKIWK 768 (768)
Q Consensus 760 ~DG~V~IWD 768 (768)
.++.|.+||
T Consensus 241 ~~~~i~~~d 249 (331)
T 3u4y_A 241 STVDVFNFN 249 (331)
T ss_dssp SEEEEEEEE
T ss_pred CCCEEEEEE
Confidence 577899886
No 146
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.73 E-value=1.2e-16 Score=189.38 Aligned_cols=243 Identities=12% Similarity=0.084 Sum_probs=165.5
Q ss_pred cCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCC---CeEEEEEcCCCCEEEEEeCC---
Q 004207 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS---KVESCHFSPDGKLLATGGHD--- 576 (768)
Q Consensus 503 ~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~---~I~sl~fSpdg~~LaSgs~D--- 576 (768)
.+.+.++++ +.|++|++|....+. ....+..|.. .|.+++|||||++|++++.+
T Consensus 25 spdg~~~~~-~~dg~i~~~d~~~g~-------------------~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~ 84 (723)
T 1xfd_A 25 ISDTEFIYR-EQKGTVRLWNVETNT-------------------STVLIEGKKIESLRAIRYEISPDREYALFSYNVEPI 84 (723)
T ss_dssp SSSSCBCCC-CSSSCEEEBCGGGCC-------------------CEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCC
T ss_pred cCCCcEEEE-eCCCCEEEEECCCCc-------------------EEEEeccccccccccceEEECCCCCEEEEEecCccc
Confidence 334456655 678899999543221 1233445554 49999999999999999775
Q ss_pred ------CcEEEEECCCCeEEEEec---cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCC-----
Q 004207 577 ------KKAVLWCTESFTVKSTLE---EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTT----- 642 (768)
Q Consensus 577 ------g~I~VWdl~t~~~~~tl~---~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~----- 642 (768)
+.|++||+.+++. ..+. .|...|.+++|+|||++|++++. +.|++||+.+++. ......+...
T Consensus 85 ~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~-~~~~~~~~~~~~~~g 161 (723)
T 1xfd_A 85 YQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQA-IRVVSTGKEGVIYNG 161 (723)
T ss_dssp SSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCC-EEEECCCBTTTEEEE
T ss_pred eeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCce-EEEecCCCCCceECc
Confidence 7788999998876 3333 34445889999999999999886 7999999998765 4444433333
Q ss_pred -------------eEEEEEeCCCCeEEEEEeCC---------------------------------CcEEEEECCCCeeE
Q 004207 643 -------------VMSLDFHPSKEDLLCSCDNN---------------------------------SEIRYWSINNGSCA 676 (768)
Q Consensus 643 -------------V~slafsp~g~~lLaSgs~D---------------------------------g~I~iWDl~sg~~i 676 (768)
+.+++|+|+|+.++++...+ ..|++||+.++++.
T Consensus 162 ~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~ 241 (723)
T 1xfd_A 162 LSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHD 241 (723)
T ss_dssp ECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCC
T ss_pred ccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCcee
Confidence 37899999998766554322 27999999988765
Q ss_pred EEEec-------CCCeeEEEEecCCCEEEEEEcC----CeEEEEECCCceEeeec-------------c-----------
Q 004207 677 GVFKC-------QSGATQMRFQPRLGRILAAAIE----NYISILDVETQVCRLKL-------------Q----------- 721 (768)
Q Consensus 677 ~~~~~-------~~~i~sl~fsp~~~~llags~D----g~I~IwD~~t~~~~~~~-------------~----------- 721 (768)
..+.. ...+..++|+|++.++++.+.. ..|++||+.++.+.... .
T Consensus 242 ~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~ 321 (723)
T 1xfd_A 242 LEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFF 321 (723)
T ss_dssp EECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEE
T ss_pred EEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEE
Confidence 55543 2457889999999877666543 57899998775432110 0
Q ss_pred --------------eeEEee-cCCCc---eEEeccCCCCeeE-EEEeCCCCEEEEEECC---CcEEEeC
Q 004207 722 --------------TLELWN-MTENK---TLTLSAHDKLVSS-LAASTVNGMVASASHD---KCVKIWK 768 (768)
Q Consensus 722 --------------~I~iwd-~~~~~---~~~l~~H~~~I~s-la~spdg~~LaSgs~D---G~V~IWD 768 (768)
.|.+|| ...+. ...+..+...+.. ++|+|++++|+..+.+ +.++||+
T Consensus 322 ~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~ 390 (723)
T 1xfd_A 322 FIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYS 390 (723)
T ss_dssp EEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEE
T ss_pred EEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEE
Confidence 133445 23333 3333333344544 6999999999877665 7888884
No 147
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.73 E-value=3.8e-15 Score=161.23 Aligned_cols=237 Identities=9% Similarity=0.034 Sum_probs=162.0
Q ss_pred CccccCCCCEEEeecCC----CcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEe
Q 004207 499 PNQLTDMDRFVDDGSLD----DNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG 574 (768)
Q Consensus 499 ~~~l~~~~~~latGS~D----~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs 574 (768)
...+++.+++|++++.+ +.|.+|..... ...+..+..+..+......+++ ++++|++++
T Consensus 54 ~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~---------------~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~ 116 (361)
T 3scy_A 54 YLIPSADGKFVYSVNEFSKDQAAVSAFAFDKE---------------KGTLHLLNTQKTMGADPCYLTT--NGKNIVTAN 116 (361)
T ss_dssp SEEECTTSSEEEEEECCSSTTCEEEEEEEETT---------------TTEEEEEEEEECSSSCEEEEEE--CSSEEEEEE
T ss_pred eEEECCCCCEEEEEEccCCCCCcEEEEEEeCC---------------CCcEEEeeEeccCCCCcEEEEE--CCCEEEEEE
Confidence 34567778888888775 68888854321 1123444555556667788888 888777776
Q ss_pred -CCCcEEEEECCCCeEEEE------ecc--------CCCCEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCCe------e
Q 004207 575 -HDKKAVLWCTESFTVKST------LEE--------HTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDY------S 632 (768)
Q Consensus 575 -~Dg~I~VWdl~t~~~~~t------l~~--------h~~~V~sl~fspdg~~LaTgs-~DgtIrVWDl~t~~~------~ 632 (768)
.++.|.+|++.....+.. ..+ +...+.+++|+|++++|++++ .++.|++|+++.... .
T Consensus 117 ~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l 196 (361)
T 3scy_A 117 YSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKF 196 (361)
T ss_dssp TTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCC
T ss_pred CCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccce
Confidence 578999999875432211 111 123468899999999776665 478999999875432 1
Q ss_pred ------EEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEE--EEec----CCCeeEEEEecCCCEEEEE
Q 004207 633 ------LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG--VFKC----QSGATQMRFQPRLGRILAA 700 (768)
Q Consensus 633 ------~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~--~~~~----~~~i~sl~fsp~~~~llag 700 (768)
......+...+.+++|+|+++.+++++..++.|.+||+.++.... .+.. ......++|+|++.+|+++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~ 276 (361)
T 3scy_A 197 LTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYAS 276 (361)
T ss_dssp EEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEE
T ss_pred eecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEE
Confidence 122233456688999999999787777679999999998776532 2322 2336799999999998877
Q ss_pred EcC--CeEEEEECC--CceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEE-CCCcEEEe
Q 004207 701 AIE--NYISILDVE--TQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS-HDKCVKIW 767 (768)
Q Consensus 701 s~D--g~I~IwD~~--t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs-~DG~V~IW 767 (768)
..+ +.|.+|++. ++.... ...+.. ...+.+++|+|++++|++++ .++.|.||
T Consensus 277 ~~~~~~~i~v~~~~~~~g~~~~--------------~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~ 333 (361)
T 3scy_A 277 NRLKADGVAIFKVDETNGTLTK--------------VGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIF 333 (361)
T ss_dssp ECSSSCEEEEEEECTTTCCEEE--------------EEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEE
T ss_pred CCCCCCEEEEEEEcCCCCcEEE--------------eeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEE
Confidence 765 889999985 222110 001112 34678999999999998888 67899996
No 148
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.71 E-value=3e-16 Score=185.74 Aligned_cols=215 Identities=13% Similarity=0.106 Sum_probs=150.4
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-----CeEEEEeccCCCC--------------EEEEEEcCCCCE
Q 004207 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES-----FTVKSTLEEHTQW--------------ITDVRFSPSLSR 611 (768)
Q Consensus 551 l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t-----~~~~~tl~~h~~~--------------V~sl~fspdg~~ 611 (768)
+..+...+.+++|||||++|+++ .|+.|++||+.+ ++.......+... +.+++|+|||++
T Consensus 116 l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~ 194 (706)
T 2z3z_A 116 LFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSC 194 (706)
T ss_dssp EECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSE
T ss_pred ccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCE
Confidence 34566778999999999999985 679999999998 7766544443332 489999999999
Q ss_pred EEEEe---------------------------------CCCcEEEEECCCCCeeEEEe-ecCCCCeEEEEEeCCCCeEEE
Q 004207 612 LATSS---------------------------------ADRTVRVWDTENPDYSLRTF-TGHSTTVMSLDFHPSKEDLLC 657 (768)
Q Consensus 612 LaTgs---------------------------------~DgtIrVWDl~t~~~~~~~~-~~h~~~V~slafsp~g~~lLa 657 (768)
|++++ .+..|++||+.+++...... ..|...+.+++|+|+|+.+++
T Consensus 195 la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~ 274 (706)
T 2z3z_A 195 LAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYV 274 (706)
T ss_dssp EEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEE
T ss_pred EEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEE
Confidence 99998 44689999998866422111 246678999999999986665
Q ss_pred EEeCCC-----cEEEEECCCC-eeEEEEec--CC---CeeEEEEec--CCCEEEEEEcCCeEEEEECC-CceEeeecc--
Q 004207 658 SCDNNS-----EIRYWSINNG-SCAGVFKC--QS---GATQMRFQP--RLGRILAAAIENYISILDVE-TQVCRLKLQ-- 721 (768)
Q Consensus 658 Sgs~Dg-----~I~iWDl~sg-~~i~~~~~--~~---~i~sl~fsp--~~~~llags~Dg~I~IwD~~-t~~~~~~~~-- 721 (768)
++ .++ .|++||+.++ ........ .. .+..++|+| ++.+++++..|+.+.||++. ++.....+.
T Consensus 275 ~~-~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~ 353 (706)
T 2z3z_A 275 AE-VNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKG 353 (706)
T ss_dssp EE-ECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCS
T ss_pred EE-eCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCC
Confidence 44 344 8999999998 43333322 11 246789999 98888888788888888664 221111100
Q ss_pred -----------------------------eeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECC----CcEEEeC
Q 004207 722 -----------------------------TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD----KCVKIWK 768 (768)
Q Consensus 722 -----------------------------~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~D----G~V~IWD 768 (768)
.|..||..++....+ .|...+.+++|+|++++|+.++.+ +.|++||
T Consensus 354 ~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~l-~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d 432 (706)
T 2z3z_A 354 EWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKTKDL-TPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTN 432 (706)
T ss_dssp SSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCCEES-CCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEE
T ss_pred CeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCceec-cCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEE
Confidence 233344444443333 366779999999999988876544 4588885
No 149
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.69 E-value=6.6e-15 Score=159.35 Aligned_cols=202 Identities=12% Similarity=0.068 Sum_probs=143.8
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCC----CcEEEEECCC--CeE--EEEeccCCCCEEEEEEcCCCCEEEEEe-CCCcEEEE
Q 004207 554 STSKVESCHFSPDGKLLATGGHD----KKAVLWCTES--FTV--KSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVW 624 (768)
Q Consensus 554 H~~~I~sl~fSpdg~~LaSgs~D----g~I~VWdl~t--~~~--~~tl~~h~~~V~sl~fspdg~~LaTgs-~DgtIrVW 624 (768)
+...+..++|+|||++|++++.+ +.|.+|++.. ++. +.....+...+..+++ ++++|++++ .+++|.+|
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~ 125 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF 125 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence 66778889999999999999886 7999998765 443 3344445566788888 788777776 57899999
Q ss_pred ECCCCCee--E-EE--eec--------CCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCe-------e-------EE
Q 004207 625 DTENPDYS--L-RT--FTG--------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-------C-------AG 677 (768)
Q Consensus 625 Dl~t~~~~--~-~~--~~~--------h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~-------~-------i~ 677 (768)
++...... + .. ..+ +...+.+++|+|+++.+++++..++.|.+|++.... . ..
T Consensus 126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~ 205 (361)
T 3scy_A 126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAF 205 (361)
T ss_dssp EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEE
T ss_pred EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccce
Confidence 99754321 1 11 111 123458899999999888888778999999987543 1 11
Q ss_pred EEecCCCeeEEEEecCCCEEEEEE-cCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEE
Q 004207 678 VFKCQSGATQMRFQPRLGRILAAA-IENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVA 756 (768)
Q Consensus 678 ~~~~~~~i~sl~fsp~~~~llags-~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~La 756 (768)
.+.....+..++|+|++.++++++ .++.|.+||+.++..... .. ......+...+.+++|+|++++|+
T Consensus 206 ~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~----~~-------~~~~~~~~~~~~~i~~spdg~~l~ 274 (361)
T 3scy_A 206 KVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEI----QT-------VAADTVNAQGSGDIHLSPDGKYLY 274 (361)
T ss_dssp ECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEE----EE-------EESCSSCCCCEEEEEECTTSSEEE
T ss_pred ecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEe----EE-------EecCCCCCCCcccEEECCCCCEEE
Confidence 222355688999999999888887 589999999876543211 00 011223445678999999999987
Q ss_pred EEECC--CcEEEeC
Q 004207 757 SASHD--KCVKIWK 768 (768)
Q Consensus 757 Sgs~D--G~V~IWD 768 (768)
+++.+ +.|.||+
T Consensus 275 v~~~~~~~~i~v~~ 288 (361)
T 3scy_A 275 ASNRLKADGVAIFK 288 (361)
T ss_dssp EEECSSSCEEEEEE
T ss_pred EECCCCCCEEEEEE
Confidence 77654 8899985
No 150
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.69 E-value=2.9e-15 Score=158.56 Aligned_cols=196 Identities=11% Similarity=0.081 Sum_probs=153.8
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEeccCCC--CEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCCeeEEEee-cC----
Q 004207 568 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQ--WITDVRFSPSLSRLA-TSSADRTVRVWDTENPDYSLRTFT-GH---- 639 (768)
Q Consensus 568 ~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~--~V~sl~fspdg~~La-Tgs~DgtIrVWDl~t~~~~~~~~~-~h---- 639 (768)
++|++++.++.|.+||+.+++.+..+..... .+.+++|+|++++++ +++.++.|++||+.+++. +..+. ++
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~-~~~~~~~~~~~~ 80 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGET-LGRIDLSTPEER 80 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCE-EEEEECCBTTEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCe-EeeEEcCCcccc
Confidence 4789999999999999999998887763322 478999999997664 555678999999998775 33333 22
Q ss_pred CCCeEEEEEeCCCCeEEEEEe-----------CCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEE
Q 004207 640 STTVMSLDFHPSKEDLLCSCD-----------NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISI 708 (768)
Q Consensus 640 ~~~V~slafsp~g~~lLaSgs-----------~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~I 708 (768)
...+.+++|+|+++.++++.. .++.|.+||+.+++.+..+.....+..++|+|++.+++++ ++.|.+
T Consensus 81 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~i~~ 158 (337)
T 1pby_B 81 VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL--GRDLHV 158 (337)
T ss_dssp EECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE--SSSEEE
T ss_pred cccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe--CCeEEE
Confidence 226788999999987665531 4799999999999988888877778899999999988887 688999
Q ss_pred EECCCceEeeecc------------------------------------------------eeEEeecCCCceE--Eecc
Q 004207 709 LDVETQVCRLKLQ------------------------------------------------TLELWNMTENKTL--TLSA 738 (768)
Q Consensus 709 wD~~t~~~~~~~~------------------------------------------------~I~iwd~~~~~~~--~l~~ 738 (768)
||+.++.....+. .+.+||..+++.. .+..
T Consensus 159 ~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~ 238 (337)
T 1pby_B 159 MDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRI 238 (337)
T ss_dssp EETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEE
T ss_pred EECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCC
Confidence 9998876543211 2578888877654 3445
Q ss_pred CCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 739 HDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 739 H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
+...+.+++|+|++++|+++ ++.|++||
T Consensus 239 ~~~~~~~~~~s~dg~~l~~~--~~~v~~~d 266 (337)
T 1pby_B 239 MDVFYFSTAVNPAKTRAFGA--YNVLESFD 266 (337)
T ss_dssp CSSCEEEEEECTTSSEEEEE--ESEEEEEE
T ss_pred CCCceeeEEECCCCCEEEEe--CCeEEEEE
Confidence 66778899999999999988 78999996
No 151
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.69 E-value=6e-15 Score=158.58 Aligned_cols=206 Identities=12% Similarity=0.117 Sum_probs=142.6
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeC---CCcEEEEECCCCe--EEEEeccCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEEC
Q 004207 553 ASTSKVESCHFSPDGKLLATGGH---DKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDT 626 (768)
Q Consensus 553 ~H~~~I~sl~fSpdg~~LaSgs~---Dg~I~VWdl~t~~--~~~tl~~h~~~V~sl~fspdg~~LaTgs-~DgtIrVWDl 626 (768)
.+...+..++|+|||+ |++++. ++.|.+|++.+++ .+..+..+...+..++|+|++++|++++ .+++|++||+
T Consensus 37 ~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~ 115 (347)
T 3hfq_A 37 AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKI 115 (347)
T ss_dssp EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEe
Confidence 3446678899999999 555443 6899999998766 3444455677889999999999998888 6789999999
Q ss_pred CC-CCee-EEEeec---------CCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECC-CCeeEEE--Eec--CCCeeEEEE
Q 004207 627 EN-PDYS-LRTFTG---------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCAGV--FKC--QSGATQMRF 690 (768)
Q Consensus 627 ~t-~~~~-~~~~~~---------h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~-sg~~i~~--~~~--~~~i~sl~f 690 (768)
.. +... +..+.. +...+.+++|+|+++ +++++..++.|++||+. +++.... +.. ...+..++|
T Consensus 116 ~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~ 194 (347)
T 3hfq_A 116 AADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVF 194 (347)
T ss_dssp CTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEE
T ss_pred CCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEE
Confidence 63 2221 222221 123488999999998 88788888999999998 5554322 222 346788999
Q ss_pred ecCCCEEEEEE-cCCeEEEEECCC--ceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEE-EEEECCCcEEE
Q 004207 691 QPRLGRILAAA-IENYISILDVET--QVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMV-ASASHDKCVKI 766 (768)
Q Consensus 691 sp~~~~llags-~Dg~I~IwD~~t--~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~L-aSgs~DG~V~I 766 (768)
+|++.++++++ .++.|.+|++.. +.... +......... ......+..++|+|+|++| ++...++.|.+
T Consensus 195 spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~----~~~~~~~~~~----~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v 266 (347)
T 3hfq_A 195 SPDGQYAFLAGELSSQIASLKYDTQTGAFTQ----LGIVKTIPAD----YTAHNGAAAIRLSHDGHFLYVSNRGYNTLAV 266 (347)
T ss_dssp CTTSSEEEEEETTTTEEEEEEEETTTTEEEE----EEEEESSCTT----CCSCCEEEEEEECTTSCEEEEEEETTTEEEE
T ss_pred CCCCCEEEEEeCCCCEEEEEEecCCCCceEE----eeeeeecCCC----CCCCCcceeEEECCCCCEEEEEeCCCCEEEE
Confidence 99999777755 578899998864 32211 0000000000 0112458899999999977 45566899999
Q ss_pred eC
Q 004207 767 WK 768 (768)
Q Consensus 767 WD 768 (768)
||
T Consensus 267 ~~ 268 (347)
T 3hfq_A 267 FA 268 (347)
T ss_dssp EE
T ss_pred EE
Confidence 96
No 152
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.68 E-value=5.7e-16 Score=179.48 Aligned_cols=209 Identities=10% Similarity=0.036 Sum_probs=156.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeC-CCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeC---CCcEEEEECCC--
Q 004207 555 TSKVESCHFSPDGKLLATGGH-DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---DRTVRVWDTEN-- 628 (768)
Q Consensus 555 ~~~I~sl~fSpdg~~LaSgs~-Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~---DgtIrVWDl~t-- 628 (768)
..+|++++|+|||++||+++. ||++.||++++++.......+...|.+++|+|| +++++++. +...+||.++.
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~ 99 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSR 99 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTS
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccC
Confidence 457999999999999998887 999999999777665444333368999999999 78888775 45556665543
Q ss_pred CCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcC----C
Q 004207 629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE----N 704 (768)
Q Consensus 629 ~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~D----g 704 (768)
..... .+..+ ..+...+|+|+++.++++.+.++.+.+||+.++++........ .+++|+|+|.+|++++.+ .
T Consensus 100 ~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~~~~~~ 175 (582)
T 3o4h_A 100 PGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG--FGFVSDIRGDLIAGLGFFGGGRV 175 (582)
T ss_dssp TTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--CEEEEEEETTEEEEEEEEETTEE
T ss_pred CCccc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC--ceEEECCCCCEEEEEEEcCCCCe
Confidence 22212 33322 2355778999987766555555666699999988776665444 889999999999988877 7
Q ss_pred eEEEEECCCceEeeecc--------------------------eeEEeecCCCceEEeccCCCCeeEEE--------EeC
Q 004207 705 YISILDVETQVCRLKLQ--------------------------TLELWNMTENKTLTLSAHDKLVSSLA--------AST 750 (768)
Q Consensus 705 ~I~IwD~~t~~~~~~~~--------------------------~I~iwd~~~~~~~~l~~H~~~I~sla--------~sp 750 (768)
.|++||+.++....... .|.+||+.+++...+..|...|..++ |+|
T Consensus 176 ~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp 255 (582)
T 3o4h_A 176 SLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLP 255 (582)
T ss_dssp EEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEEECCCSCSHHHHHCCSEEEEEEECT
T ss_pred EEEEEcCCCCCceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEEEccCCCcChhhhhhccccceeEcC
Confidence 79999987654321110 68889998887776667777777777 999
Q ss_pred CCCEEEEEECCCcEEEeC
Q 004207 751 VNGMVASASHDKCVKIWK 768 (768)
Q Consensus 751 dg~~LaSgs~DG~V~IWD 768 (768)
||.++++++.||.++||+
T Consensus 256 dg~~~~~~~~~g~~~l~~ 273 (582)
T 3o4h_A 256 DGRLAVVARREGRSAVFI 273 (582)
T ss_dssp TSCEEEEEEETTEEEEEE
T ss_pred CCcEEEEEEcCCcEEEEE
Confidence 999999999999999995
No 153
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.67 E-value=2.9e-15 Score=186.02 Aligned_cols=188 Identities=6% Similarity=-0.036 Sum_probs=144.0
Q ss_pred Ccccc-CCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCC-CeEEEEEcCCCCEEEEEeCC
Q 004207 499 PNQLT-DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS-KVESCHFSPDGKLLATGGHD 576 (768)
Q Consensus 499 ~~~l~-~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~-~I~sl~fSpdg~~LaSgs~D 576 (768)
...++ +.+..++.++ ++.+.+|..... ....+..|.. .+.+++|+ ||+.|++++.+
T Consensus 300 ~~~~S~pdG~~la~~~-~~~i~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~ 357 (1045)
T 1k32_A 300 AEDFSPLDGDLIAFVS-RGQAFIQDVSGT--------------------YVLKVPEPLRIRYVRRGGD-TKVAFIHGTRE 357 (1045)
T ss_dssp EEEEEECGGGCEEEEE-TTEEEEECTTSS--------------------BEEECSCCSCEEEEEECSS-SEEEEEEEETT
T ss_pred eeeecCCCCCEEEEEE-cCEEEEEcCCCC--------------------ceEEccCCCcceEEeeeEc-CCCeEEEEECC
Confidence 34445 5666677666 677777743211 1223456777 89999999 99999999988
Q ss_pred CcEE-EEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeE
Q 004207 577 KKAV-LWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDL 655 (768)
Q Consensus 577 g~I~-VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~l 655 (768)
..|. +||+.+++... +..|...+.+++|+||+++|++++.++.|++||+.+++. .....+|...|.+++|+|+|+.+
T Consensus 358 ~~l~~~~d~~~~~~~~-l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~-~~~~~~~~~~v~~~~~SpDG~~l 435 (1045)
T 1k32_A 358 GDFLGIYDYRTGKAEK-FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKP-TVIERSREAMITDFTISDNSRFI 435 (1045)
T ss_dssp EEEEEEEETTTCCEEE-CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCE-EEEEECSSSCCCCEEECTTSCEE
T ss_pred CceEEEEECCCCCceE-ecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCce-EEeccCCCCCccceEECCCCCeE
Confidence 8898 99998876554 447888999999999999999999999999999998774 55566788999999999999877
Q ss_pred EEEEeCC---------CcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEE
Q 004207 656 LCSCDNN---------SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILD 710 (768)
Q Consensus 656 LaSgs~D---------g~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD 710 (768)
++++..+ +.|++||+.+++......+...+..++|+|++.+|++++.++...+|+
T Consensus 436 a~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~ 499 (1045)
T 1k32_A 436 AYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPD 499 (1045)
T ss_dssp EEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEEC
T ss_pred EEEecCccccccCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcc
Confidence 6555432 489999999887433333455678899999999999988766554444
No 154
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.67 E-value=7.5e-15 Score=160.15 Aligned_cols=239 Identities=10% Similarity=0.082 Sum_probs=159.5
Q ss_pred CccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCE--EEEEe--
Q 004207 499 PNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKL--LATGG-- 574 (768)
Q Consensus 499 ~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~--LaSgs-- 574 (768)
...+++.+++|++++.+ .|.+|..... +. +..+.....+ +.+.+++|+|||++ +++++
T Consensus 44 ~~a~spdg~~l~~~~~~-~v~~~~~~~~---------------g~-~~~~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~ 105 (365)
T 1jof_A 44 WMTFDHERKNIYGAAMK-KWSSFAVKSP---------------TE-IVHEASHPIG-GHPRANDADTNTRAIFLLAAKQP 105 (365)
T ss_dssp EEEECTTSSEEEEEEBT-EEEEEEEEET---------------TE-EEEEEEEECC-SSGGGGCTTSCCEEEEEEECSST
T ss_pred EEEECCCCCEEEEEccc-eEEEEEECCC---------------CC-EEEeeEeecC-CCCccEEECCCCCEEEEEEecCC
Confidence 34456677788888877 8888854211 10 1111111111 23566899999994 45553
Q ss_pred -----------CCCcEEEEECC-CCeEEEEec----cCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEECC-CCCee-EEE
Q 004207 575 -----------HDKKAVLWCTE-SFTVKSTLE----EHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTE-NPDYS-LRT 635 (768)
Q Consensus 575 -----------~Dg~I~VWdl~-t~~~~~tl~----~h~~~V~sl~fspdg~~LaTgs~-DgtIrVWDl~-t~~~~-~~~ 635 (768)
.++.+.+|++. +++....+. .+...+.+++|+|+|++|++++. ++.|++||++ +++.. +..
T Consensus 106 ~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~ 185 (365)
T 1jof_A 106 PYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGS 185 (365)
T ss_dssp TCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEE
T ss_pred cceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeee
Confidence 68999999997 466554443 24567999999999998887764 6799999998 66542 223
Q ss_pred ee--cCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECC--CCeeEE---EEec---C----C-------CeeEEE-EecC
Q 004207 636 FT--GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN--NGSCAG---VFKC---Q----S-------GATQMR-FQPR 693 (768)
Q Consensus 636 ~~--~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~--sg~~i~---~~~~---~----~-------~i~sl~-fsp~ 693 (768)
+. .|...+..++|+|+|+.+++++..++.|.+|++. +++... .+.. . . .+..++ |+|+
T Consensus 186 ~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spd 265 (365)
T 1jof_A 186 VDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFS 265 (365)
T ss_dssp EECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTT
T ss_pred EecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCC
Confidence 33 2456799999999998777666668899999865 565432 2221 1 1 377899 9999
Q ss_pred CCEEEEEEcC-C-----eEEEEECC-CceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeC---CCCEEEEEECC-C
Q 004207 694 LGRILAAAIE-N-----YISILDVE-TQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAAST---VNGMVASASHD-K 762 (768)
Q Consensus 694 ~~~llags~D-g-----~I~IwD~~-t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~sp---dg~~LaSgs~D-G 762 (768)
+++|+++..+ + .|.+|++. ++...... .....+...+..++|+| ++++|++++.+ +
T Consensus 266 G~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~-------------~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~ 332 (365)
T 1jof_A 266 GKYMFASSRANKFELQGYIAGFKLRDCGSIEKQL-------------FLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEG 332 (365)
T ss_dssp SSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEE-------------EEEECSSCCTTCCCEEECTTCTTEEEEECSSSC
T ss_pred CCEEEEECCCCCCCCCCeEEEEEECCCCCEEEee-------------eeeecCCCCcccceecCCCcCCCEEEEEEcCCC
Confidence 9988877643 3 79999885 33221000 01122444567889999 89999999874 8
Q ss_pred cEEEeC
Q 004207 763 CVKIWK 768 (768)
Q Consensus 763 ~V~IWD 768 (768)
.|.||+
T Consensus 333 ~v~v~~ 338 (365)
T 1jof_A 333 WLEIYR 338 (365)
T ss_dssp EEEEEE
T ss_pred eEEEEE
Confidence 999995
No 155
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.66 E-value=3.9e-16 Score=184.87 Aligned_cols=209 Identities=13% Similarity=0.121 Sum_probs=154.7
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCC---CEEEEEEcCCCCEEEEEeCC---------CcEEEE
Q 004207 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ---WITDVRFSPSLSRLATSSAD---------RTVRVW 624 (768)
Q Consensus 557 ~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~---~V~sl~fspdg~~LaTgs~D---------gtIrVW 624 (768)
.+.+++|+|||+++++ +.||+|++||+.+++....+..|.. .|.+++|+|||++|++++.+ +.|++|
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~ 96 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS 96 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence 4678999999997776 7899999999999988888877765 49999999999999999875 778899
Q ss_pred ECCCCCee-EEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCe-----------------
Q 004207 625 DTENPDYS-LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGA----------------- 685 (768)
Q Consensus 625 Dl~t~~~~-~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i----------------- 685 (768)
|+.+++.. +....+|...+.+++|+|+|+.++++. ++.|++||+.+++....... ...+
T Consensus 97 d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~--~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~ 174 (723)
T 1xfd_A 97 KIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF--ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKT 174 (723)
T ss_dssp ESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE--TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSS
T ss_pred ECCCCceEeccCCccccccccccEECCCCCEEEEEE--CCeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccC
Confidence 99987641 122223445589999999998666444 37999999998887766553 2223
Q ss_pred -eEEEEecCCCEEEEEEcCC----------------------------------eEEEEECCCceEeee-----------
Q 004207 686 -TQMRFQPRLGRILAAAIEN----------------------------------YISILDVETQVCRLK----------- 719 (768)
Q Consensus 686 -~sl~fsp~~~~llags~Dg----------------------------------~I~IwD~~t~~~~~~----------- 719 (768)
.+++|+|++.+|++++.++ .|++||+.++.+...
T Consensus 175 ~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~ 254 (723)
T 1xfd_A 175 HIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMRE 254 (723)
T ss_dssp SEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSS
T ss_pred cceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCcc
Confidence 7899999999999887653 799999877642100
Q ss_pred -----c-------------------ceeEEeecCCCceEEec--cCCCCee----EEEEeCCCCEEEE--EECCC-----
Q 004207 720 -----L-------------------QTLELWNMTENKTLTLS--AHDKLVS----SLAASTVNGMVAS--ASHDK----- 762 (768)
Q Consensus 720 -----~-------------------~~I~iwd~~~~~~~~l~--~H~~~I~----sla~spdg~~LaS--gs~DG----- 762 (768)
. ..|.+||+.++++..+. .|...+. +++|+|||+.|+. +..|+
T Consensus 255 ~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~ 334 (723)
T 1xfd_A 255 YYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKF 334 (723)
T ss_dssp EEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCE
T ss_pred ceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcce
Confidence 0 15778888887765432 3344443 7899999986664 45677
Q ss_pred -cEEEeC
Q 004207 763 -CVKIWK 768 (768)
Q Consensus 763 -~V~IWD 768 (768)
.|.+||
T Consensus 335 ~~l~~~d 341 (723)
T 1xfd_A 335 YHITVSS 341 (723)
T ss_dssp EEEEEEC
T ss_pred eEEEEEe
Confidence 465664
No 156
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.66 E-value=4e-15 Score=184.86 Aligned_cols=193 Identities=12% Similarity=0.039 Sum_probs=157.5
Q ss_pred CCCCCeEEEEEc-CCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCC-CEEEEEEcCCCCEEEEEeCCCcEE-EEECCCC
Q 004207 553 ASTSKVESCHFS-PDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ-WITDVRFSPSLSRLATSSADRTVR-VWDTENP 629 (768)
Q Consensus 553 ~H~~~I~sl~fS-pdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~-~V~sl~fspdg~~LaTgs~DgtIr-VWDl~t~ 629 (768)
.|...|.+++|+ |||++|++++ ++.|++|++.+++.. .+..|.. .+.+++|+ +++.|++++.+..|. +||+.++
T Consensus 293 ~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~ 369 (1045)
T 1k32_A 293 ISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL-KVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTG 369 (1045)
T ss_dssp EECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEE-ECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTC
T ss_pred ccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceE-EccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCC
Confidence 356679999999 9999999887 789999999887755 4666777 89999999 999999999988898 9999876
Q ss_pred CeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEe-cCCCeeEEEEecCCCEEEEEEcCC----
Q 004207 630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIEN---- 704 (768)
Q Consensus 630 ~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~-~~~~i~sl~fsp~~~~llags~Dg---- 704 (768)
.. ..+.+|...+.+++|+|+|+.+ ++++.++.|++||+.+++....+. +...+..++|+|++.+|++++.++
T Consensus 370 ~~--~~l~~~~~~~~~~~~SpDG~~l-a~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~ 446 (1045)
T 1k32_A 370 KA--EKFEENLGNVFAMGVDRNGKFA-VVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGET 446 (1045)
T ss_dssp CE--EECCCCCCSEEEEEECTTSSEE-EEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTT
T ss_pred Cc--eEecCCccceeeeEECCCCCEE-EEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccc
Confidence 53 3444788899999999998854 477789999999999998887774 456678999999999998887654
Q ss_pred ------eEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 705 ------YISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 705 ------~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
.|++||+.++ +...+..|...+.+++|+|+|++|++++.++...+|+
T Consensus 447 ~~~~~~~i~l~d~~~g-----------------~~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~ 499 (1045)
T 1k32_A 447 DGYVMQAIHVYDMEGR-----------------KIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPD 499 (1045)
T ss_dssp CSCCEEEEEEEETTTT-----------------EEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEEC
T ss_pred cCCCCCeEEEEECCCC-----------------cEEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcc
Confidence 5666666553 3334557778889999999999999999988777774
No 157
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.65 E-value=2.5e-14 Score=155.53 Aligned_cols=249 Identities=11% Similarity=0.080 Sum_probs=172.5
Q ss_pred ccccCCCCEEEeecC-CCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCc
Q 004207 500 NQLTDMDRFVDDGSL-DDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKK 578 (768)
Q Consensus 500 ~~l~~~~~~latGS~-D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~ 578 (768)
..+.+.++.|+..+. ++...+|..... .+ .......+|...+.++.|+|||++|+.++.++.
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~--------------~g---~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~ 103 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLN--------------TQ---VATQLTEGRGDNTFGGFLSPDDDALFYVKDGRN 103 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETT--------------TC---EEEECCCSSCBCSSSCEECTTSSEEEEEETTTE
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCC--------------CC---ceEEeeeCCCCCccceEEcCCCCEEEEEeCCCe
Confidence 345666777777766 676555532111 11 122333455555667889999999999999999
Q ss_pred EEEEECCCCeEEEEeccCCCCEEEEEE--cCCCCEEEEEe----------------------CCCcEEEEECCCCCeeEE
Q 004207 579 AVLWCTESFTVKSTLEEHTQWITDVRF--SPSLSRLATSS----------------------ADRTVRVWDTENPDYSLR 634 (768)
Q Consensus 579 I~VWdl~t~~~~~tl~~h~~~V~sl~f--spdg~~LaTgs----------------------~DgtIrVWDl~t~~~~~~ 634 (768)
|++||+.+++....+..+...+....| ++++++++... .+..|++||+.+++ ..
T Consensus 104 l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~--~~ 181 (388)
T 3pe7_A 104 LMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE--ST 181 (388)
T ss_dssp EEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC--EE
T ss_pred EEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCc--eE
Confidence 999999999887777666665654444 89999887532 34689999999876 34
Q ss_pred EeecCCCCeEEEEEeC-CCCeEEEEEeC-----CCcEEEEECCCCeeEEEEecC--CCeeEEEEecCCCEEEEEEc-CC-
Q 004207 635 TFTGHSTTVMSLDFHP-SKEDLLCSCDN-----NSEIRYWSINNGSCAGVFKCQ--SGATQMRFQPRLGRILAAAI-EN- 704 (768)
Q Consensus 635 ~~~~h~~~V~slafsp-~g~~lLaSgs~-----Dg~I~iWDl~sg~~i~~~~~~--~~i~sl~fsp~~~~llags~-Dg- 704 (768)
.+..+...+..++|+| +++.++++... ...|.++|+..+......... ..+..++|+|++..|+..+. ++
T Consensus 182 ~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~ 261 (388)
T 3pe7_A 182 VILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGS 261 (388)
T ss_dssp EEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTC
T ss_pred EeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEecCCCC
Confidence 4445667899999999 88766655542 347888888765543333332 23677899999998766553 22
Q ss_pred ---eEEEEECCCceEee--e-------------------------------------cceeEEeecCCCceEEeccCCC-
Q 004207 705 ---YISILDVETQVCRL--K-------------------------------------LQTLELWNMTENKTLTLSAHDK- 741 (768)
Q Consensus 705 ---~I~IwD~~t~~~~~--~-------------------------------------~~~I~iwd~~~~~~~~l~~H~~- 741 (768)
.|++||+.+++... . ...|.+||+.++....+..|..
T Consensus 262 ~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~ 341 (388)
T 3pe7_A 262 PDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARHDTS 341 (388)
T ss_dssp CCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEEEECCCC
T ss_pred CcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEeccccCc
Confidence 39999998764211 0 0157788888888777777766
Q ss_pred ----------CeeEEEEeCCCCEEEEEE-CCCcEEEe
Q 004207 742 ----------LVSSLAASTVNGMVASAS-HDKCVKIW 767 (768)
Q Consensus 742 ----------~I~sla~spdg~~LaSgs-~DG~V~IW 767 (768)
.+.+++|+|||++|+.++ .+|...||
T Consensus 342 ~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~ 378 (388)
T 3pe7_A 342 WKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALY 378 (388)
T ss_dssp CCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEE
T ss_pred ccccccccccCCCCccCCCCCCEEEEEecCCCceeEE
Confidence 588899999999887666 47777776
No 158
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.64 E-value=7.8e-14 Score=150.06 Aligned_cols=213 Identities=14% Similarity=0.129 Sum_probs=163.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCC------------------------CcEEEEECCCCeEEEEec-cCCCCEEEEEEcCCC
Q 004207 555 TSKVESCHFSPDGKLLATGGHD------------------------KKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSL 609 (768)
Q Consensus 555 ~~~I~sl~fSpdg~~LaSgs~D------------------------g~I~VWdl~t~~~~~tl~-~h~~~V~sl~fspdg 609 (768)
-+.|.+|+++++|+++++...+ ++|.+||..+++.+..+. .+-..+..|++++++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 3569999999999999888777 479999999888877664 344578999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCCeeEEEe---------ecCCCCeEEEEEeCCCCeEEEEEe-CCCcEEEEECCCCeeEEEE
Q 004207 610 SRLATSSADRTVRVWDTENPDYSLRTF---------TGHSTTVMSLDFHPSKEDLLCSCD-NNSEIRYWSINNGSCAGVF 679 (768)
Q Consensus 610 ~~LaTgs~DgtIrVWDl~t~~~~~~~~---------~~h~~~V~slafsp~g~~lLaSgs-~Dg~I~iWDl~sg~~i~~~ 679 (768)
+++++...++.|++||.+.....+..+ .++...+.+|+|+|++..++++.+ .++.|++|| .++..+..+
T Consensus 103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~ 181 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQW 181 (329)
T ss_dssp CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEE
T ss_pred CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEe
Confidence 988888889999999987543234444 234457899999994445776775 689999999 567777766
Q ss_pred ecC-----------CCeeEEEEecCCCEEEEE-EcCCeEEEEECCCceEeeec---------------------------
Q 004207 680 KCQ-----------SGATQMRFQPRLGRILAA-AIENYISILDVETQVCRLKL--------------------------- 720 (768)
Q Consensus 680 ~~~-----------~~i~sl~fsp~~~~llag-s~Dg~I~IwD~~t~~~~~~~--------------------------- 720 (768)
... .....++++|+++.++++ ..++.|.+||..+++....+
T Consensus 182 ~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~ 261 (329)
T 3fvz_A 182 GEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPY 261 (329)
T ss_dssp CEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCC
T ss_pred ccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEE
Confidence 431 227889999985555554 46789999999855443322
Q ss_pred ------ceeEEeecCCCceEEe----ccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 721 ------QTLELWNMTENKTLTL----SAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 721 ------~~I~iwd~~~~~~~~l----~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
..+.+|+..+++.+.. .++...+..|+++|+|.++++...++.|++|+
T Consensus 262 v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~ 319 (329)
T 3fvz_A 262 FGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFT 319 (329)
T ss_dssp TTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEE
T ss_pred eccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEe
Confidence 0577888888877755 35677899999999998888888899999985
No 159
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.64 E-value=4.7e-15 Score=175.39 Aligned_cols=198 Identities=12% Similarity=0.036 Sum_probs=143.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-----C
Q 004207 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN-----P 629 (768)
Q Consensus 555 ~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t-----~ 629 (768)
...|.+++|+|| +.++.+. |+.|++||+.+++.... ..+...+.+++|+|||++|+++ .|+.|++||+.+ +
T Consensus 81 ~~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~l-~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g 156 (706)
T 2z3z_A 81 AFPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVTYL-FDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMS 156 (706)
T ss_dssp -CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEEEE-ECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCC
T ss_pred ccCceeEEECCC-CeEEEEE-CCEEEEEECCCCceEEc-cCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCC
Confidence 367999999999 6666553 59999999998876544 4466778999999999999985 689999999987 6
Q ss_pred CeeEEEeecCCCC--------------eEEEEEeCCCCeEEEEEe--------------------------------CCC
Q 004207 630 DYSLRTFTGHSTT--------------VMSLDFHPSKEDLLCSCD--------------------------------NNS 663 (768)
Q Consensus 630 ~~~~~~~~~h~~~--------------V~slafsp~g~~lLaSgs--------------------------------~Dg 663 (768)
+. ......+... +.+++|+|+|+.+++++. .+.
T Consensus 157 ~~-~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~ 235 (706)
T 2z3z_A 157 RA-IAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHV 235 (706)
T ss_dssp CC-EESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEE
T ss_pred Cc-EEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCee
Confidence 54 3323323332 489999999987665541 346
Q ss_pred cEEEEECCCCeeEEEEe---cCCCeeEEEEecCCCEEEEEEcCC-----eEEEEECCCceEeeecceeEEeecCCCceEE
Q 004207 664 EIRYWSINNGSCAGVFK---CQSGATQMRFQPRLGRILAAAIEN-----YISILDVETQVCRLKLQTLELWNMTENKTLT 735 (768)
Q Consensus 664 ~I~iWDl~sg~~i~~~~---~~~~i~sl~fsp~~~~llags~Dg-----~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~ 735 (768)
.|++||+.+++...... ....+..++|+|++.+|++++.++ .|.+||+.++.....+ ... .
T Consensus 236 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~-----~~~------~ 304 (706)
T 2z3z_A 236 TVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTL-----FVE------T 304 (706)
T ss_dssp EEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEE-----EEE------E
T ss_pred EEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEE-----EEc------c
Confidence 79999999888655442 234588999999999999888775 7888888776221110 000 0
Q ss_pred eccCCCCeeEEEEeC--CCCEEEEEECCCcEEEeC
Q 004207 736 LSAHDKLVSSLAAST--VNGMVASASHDKCVKIWK 768 (768)
Q Consensus 736 l~~H~~~I~sla~sp--dg~~LaSgs~DG~V~IWD 768 (768)
.......+.+++|+| ++++|++++.||.++||+
T Consensus 305 ~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~ 339 (706)
T 2z3z_A 305 DKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYL 339 (706)
T ss_dssp CSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEE
T ss_pred CCCeECccCCceeecCCCCEEEEEEccCCccEEEE
Confidence 001112356789999 999999999999999984
No 160
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.63 E-value=3.6e-14 Score=154.76 Aligned_cols=207 Identities=9% Similarity=0.081 Sum_probs=142.0
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC-CCeEEEEeccC-CCCEEEEEEcCCCCE--EEEEe-------------
Q 004207 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTE-SFTVKSTLEEH-TQWITDVRFSPSLSR--LATSS------------- 616 (768)
Q Consensus 554 H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~-t~~~~~tl~~h-~~~V~sl~fspdg~~--LaTgs------------- 616 (768)
+...+..++|+|||++|++++.+ .|.+|++. +++........ .+.+.+++|+|++++ +++++
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~ 116 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK 116 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeec
Confidence 44568899999999999999888 99999997 77765433211 123567899999994 45553
Q ss_pred CCCcEEEEECCC-CCeeEEEee----cCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECC-CCeeE--EEEec---CCCe
Q 004207 617 ADRTVRVWDTEN-PDYSLRTFT----GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCA--GVFKC---QSGA 685 (768)
Q Consensus 617 ~DgtIrVWDl~t-~~~~~~~~~----~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~-sg~~i--~~~~~---~~~i 685 (768)
.++++.+|+++. ++. ...+. .+...+.+++|+|+|+.++++...++.|++||+. +++.. ..+.. ...+
T Consensus 117 ~~g~v~v~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p 195 (365)
T 1jof_A 117 FAGYGNVFSVSETGKL-EKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHP 195 (365)
T ss_dssp SCCEEEEEEECTTCCE-EEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCE
T ss_pred CCceEEEEccCCCCcC-cceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCC
Confidence 689999999974 443 22222 2456799999999998776555557899999998 67653 33331 4568
Q ss_pred eEEEEecCCCEEEEEEc-CCeEEEEECC--CceEeeecceeEEeecCCCceEEeccCCC------CeeEEE-EeCCCCEE
Q 004207 686 TQMRFQPRLGRILAAAI-ENYISILDVE--TQVCRLKLQTLELWNMTENKTLTLSAHDK------LVSSLA-ASTVNGMV 755 (768)
Q Consensus 686 ~sl~fsp~~~~llags~-Dg~I~IwD~~--t~~~~~~~~~I~iwd~~~~~~~~l~~H~~------~I~sla-~spdg~~L 755 (768)
..++|+|++.++++++. ++.|.+|++. ++........+. .+..+ +.+|.. .+..++ |+|+|++|
T Consensus 196 ~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~--~~~~~----~~g~~~~~~~~~~~~~i~~~spdG~~l 269 (365)
T 1jof_A 196 RWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFP--LIPPG----IPDRDPETGKGLYRADVCALTFSGKYM 269 (365)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEE--SSCTT----CCCBCTTTSSBSEEEEEEEECTTSSEE
T ss_pred CEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEE--cCCCC----cCCcccccccccccccEEEECCCCCEE
Confidence 89999999999888775 6889998765 333211000010 00000 112332 588999 99999988
Q ss_pred EEEECCC------cEEEeC
Q 004207 756 ASASHDK------CVKIWK 768 (768)
Q Consensus 756 aSgs~DG------~V~IWD 768 (768)
++++.+. .|.+|+
T Consensus 270 ~v~~~~~~~~~~~~i~v~~ 288 (365)
T 1jof_A 270 FASSRANKFELQGYIAGFK 288 (365)
T ss_dssp EEEEEESSTTSCCEEEEEE
T ss_pred EEECCCCCCCCCCeEEEEE
Confidence 8776432 799985
No 161
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.63 E-value=8.9e-15 Score=155.85 Aligned_cols=203 Identities=11% Similarity=0.030 Sum_probs=146.9
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCC-CCEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCCeeEEEee
Q 004207 560 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHT-QWITDVRFSPSLSRLA-TSSADRTVRVWDTENPDYSLRTFT 637 (768)
Q Consensus 560 sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~-~~V~sl~fspdg~~La-Tgs~DgtIrVWDl~t~~~~~~~~~ 637 (768)
++++++++.++++++.++.|++||+.+++.+..+..+. ..+..++|+|++++++ ++..++.|++||+.+++. +..+.
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~-~~~~~ 82 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKN-TFHAN 82 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEE-EEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcE-EEEEE
Confidence 45678888899999999999999999999888876543 2578999999998665 455689999999998765 43343
Q ss_pred -cC-----CCCeEEEEEeCCCCeEEEEEeC-----------CCcEEEEECCCCe---eEEEEecCCCeeEEEEecCCCEE
Q 004207 638 -GH-----STTVMSLDFHPSKEDLLCSCDN-----------NSEIRYWSINNGS---CAGVFKCQSGATQMRFQPRLGRI 697 (768)
Q Consensus 638 -~h-----~~~V~slafsp~g~~lLaSgs~-----------Dg~I~iWDl~sg~---~i~~~~~~~~i~sl~fsp~~~~l 697 (768)
.+ ...+.+++|+|+++.+++++.. ++.|.+||+.+++ .+..+.....+.+++|+|++. +
T Consensus 83 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l 161 (349)
T 1jmx_B 83 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-L 161 (349)
T ss_dssp SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-E
T ss_pred cccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-E
Confidence 22 2337889999999877755533 4899999998843 445555666788999999998 6
Q ss_pred EEEEcCCeEEEEECCCceEeeecce--------------------------------------------------eEEee
Q 004207 698 LAAAIENYISILDVETQVCRLKLQT--------------------------------------------------LELWN 727 (768)
Q Consensus 698 lags~Dg~I~IwD~~t~~~~~~~~~--------------------------------------------------I~iwd 727 (768)
+++ ++.|.+||+.+++....+.. +..++
T Consensus 162 ~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 239 (349)
T 1jmx_B 162 YVA--GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVD 239 (349)
T ss_dssp EEE--SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEE
T ss_pred EEc--cCcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEe
Confidence 664 34499999988765433210 00123
Q ss_pred cCCCceE--EeccCCCCeeEEEEeC-CCCEEEEEECCCcEEEeC
Q 004207 728 MTENKTL--TLSAHDKLVSSLAAST-VNGMVASASHDKCVKIWK 768 (768)
Q Consensus 728 ~~~~~~~--~l~~H~~~I~sla~sp-dg~~LaSgs~DG~V~IWD 768 (768)
..++++. .+..+...+.+++|+| ++++|+++ ++.|.+||
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d 281 (349)
T 1jmx_B 240 LKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYD 281 (349)
T ss_dssp TTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEE
T ss_pred ccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEE
Confidence 3333322 2223445688999999 99999888 88999996
No 162
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.61 E-value=1.3e-14 Score=172.27 Aligned_cols=241 Identities=12% Similarity=0.106 Sum_probs=157.3
Q ss_pred CCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCC---CeEEEEEcCCCCEEEEEeC------
Q 004207 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS---KVESCHFSPDGKLLATGGH------ 575 (768)
Q Consensus 505 ~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~---~I~sl~fSpdg~~LaSgs~------ 575 (768)
.+.+++++ .|++|++|....+. ....+..|.. .|.+++|||||++|++++.
T Consensus 26 dg~~~~~~-~d~~i~~~~~~~g~-------------------~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~ 85 (719)
T 1z68_A 26 GQEYLHQS-ADNNIVLYNIETGQ-------------------SYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWR 85 (719)
T ss_dssp SSEEEEEC-TTSCEEEEESSSCC-------------------EEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSS
T ss_pred CCeEEEEc-CCCCEEEEEcCCCc-------------------EEEEEccccccccceeeEEECCCCCeEEEEecCceeEE
Confidence 33555555 58999999654331 1222223322 4899999999999998876
Q ss_pred ---CCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCe---------
Q 004207 576 ---DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV--------- 643 (768)
Q Consensus 576 ---Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V--------- 643 (768)
|+.|++||+.+++.+.... ....+.+++|+|||+.|+++. |+.|++||+.+++....+..++...|
T Consensus 86 ~s~~~~i~~~d~~~g~~~~~~~-l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~ 163 (719)
T 1z68_A 86 YSYTATYYIYDLSNGEFVRGNE-LPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVY 163 (719)
T ss_dssp SCEEEEEEEEETTTTEECCSSC-CCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHH
T ss_pred eecceEEEEEECCCCcccccee-cCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEccccccee
Confidence 7899999999987731111 125688999999999999985 78999999988765222223333222
Q ss_pred --------EEEEEeCCCCeEEEEEeCCC---------------------------------cEEEEECCCCeeE--EEEe
Q 004207 644 --------MSLDFHPSKEDLLCSCDNNS---------------------------------EIRYWSINNGSCA--GVFK 680 (768)
Q Consensus 644 --------~slafsp~g~~lLaSgs~Dg---------------------------------~I~iWDl~sg~~i--~~~~ 680 (768)
.+++|+|||+.++++...++ .|++||+.+++++ ..+.
T Consensus 164 ~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~ 243 (719)
T 1z68_A 164 EEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVP 243 (719)
T ss_dssp HHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECC
T ss_pred eeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEcc
Confidence 48999999987665443322 7889999987653 1111
Q ss_pred -------cCCCeeEEEEecCCCEEEEEEcC----CeEEEEE----CCCceEeeec-----------------c-------
Q 004207 681 -------CQSGATQMRFQPRLGRILAAAIE----NYISILD----VETQVCRLKL-----------------Q------- 721 (768)
Q Consensus 681 -------~~~~i~sl~fsp~~~~llags~D----g~I~IwD----~~t~~~~~~~-----------------~------- 721 (768)
+...+..++|+|++..+++.... ..|.+|| +.++.+.... .
T Consensus 244 ~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg 323 (719)
T 1z68_A 244 VPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDA 323 (719)
T ss_dssp CCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTS
T ss_pred CCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCC
Confidence 23357899999996555443332 2488899 6554321111 0
Q ss_pred --------------eeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECC-----CcEEEeC
Q 004207 722 --------------TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD-----KCVKIWK 768 (768)
Q Consensus 722 --------------~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~D-----G~V~IWD 768 (768)
.|.+||+..+....+..+...|..+.++ +++.|+..+.+ +.++||+
T Consensus 324 ~~l~~~~~~~~g~~~l~~~~~~~~~~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~ 388 (719)
T 1z68_A 324 ISYYKIFSDKDGYKHIHYIKDTVENAIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYR 388 (719)
T ss_dssp SCEEEEEECTTSCEEEEEESSCSTTCEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEE
T ss_pred CeEEEEEEccCCceEEEEEECCCCceEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEE
Confidence 3445565555555555566667888777 78777766655 7788873
No 163
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.61 E-value=7.5e-13 Score=138.25 Aligned_cols=234 Identities=9% Similarity=0.065 Sum_probs=160.3
Q ss_pred ccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEE-cCCCCEEEEEeC-CC
Q 004207 500 NQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHF-SPDGKLLATGGH-DK 577 (768)
Q Consensus 500 ~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~f-Spdg~~LaSgs~-Dg 577 (768)
..+++.+.++++...++.|.+|... .. ....+... ....+|...+.++++ .+++.++++... ++
T Consensus 35 v~~~~~g~l~v~~~~~~~i~~~d~~-g~-----~~~~~~~~--------~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~ 100 (286)
T 1q7f_A 35 VAVNAQNDIIVADTNNHRIQIFDKE-GR-----FKFQFGEC--------GKRDSQLLYPNRVAVVRNSGDIIVTERSPTH 100 (286)
T ss_dssp EEECTTCCEEEEEGGGTEEEEECTT-SC-----EEEEECCB--------SSSTTCBSSEEEEEEETTTTEEEEEECGGGC
T ss_pred EEECCCCCEEEEECCCCEEEEECCC-Cc-----EEEEeccc--------CCCcccccCceEEEEEcCCCeEEEEcCCCCC
Confidence 3445566788887888899999532 10 00000000 001234567899999 467776666643 88
Q ss_pred cEEEEECCCCeEEEEec-cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEee--cCCCCeEEEEEeCCCCe
Q 004207 578 KAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT--GHSTTVMSLDFHPSKED 654 (768)
Q Consensus 578 ~I~VWdl~t~~~~~tl~-~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~--~h~~~V~slafsp~g~~ 654 (768)
.|++|| .+++.+..+. .+...+.+|+++++++++++...++.|++||.+. +. +..+. .+...+.+|++++++.
T Consensus 101 ~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~~-~~~~~~~~~~~~p~~i~~~~~g~- 176 (286)
T 1q7f_A 101 QIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-NV-LHKFGCSKHLEFPNGVVVNDKQE- 176 (286)
T ss_dssp EEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-CE-EEEEECTTTCSSEEEEEECSSSE-
T ss_pred EEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCC-CE-EEEeCCCCccCCcEEEEECCCCC-
Confidence 999999 5667776664 3445789999999999888887889999999753 32 34443 3456789999999976
Q ss_pred EEEEEeCCCcEEEEECCCCeeEEEEecC---CCeeEEEEecCCCEEEEEEcCC-eEEEEECCCceEeeecceeEEeecCC
Q 004207 655 LLCSCDNNSEIRYWSINNGSCAGVFKCQ---SGATQMRFQPRLGRILAAAIEN-YISILDVETQVCRLKLQTLELWNMTE 730 (768)
Q Consensus 655 lLaSgs~Dg~I~iWDl~sg~~i~~~~~~---~~i~sl~fsp~~~~llags~Dg-~I~IwD~~t~~~~~~~~~I~iwd~~~ 730 (768)
++++...++.|++||.. +..+..+... ..+..+++++++..+++...++ .|.+||.... ... .+
T Consensus 177 l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~-~~~------~~---- 244 (286)
T 1q7f_A 177 IFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQ-LIS------AL---- 244 (286)
T ss_dssp EEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSC-EEE------EE----
T ss_pred EEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCC-EEE------EE----
Confidence 77677778999999974 5666666543 4678999999987666666665 8999986542 211 11
Q ss_pred CceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 731 NKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 731 ~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
........+.+++++|++.++++ +.|+.|+||+
T Consensus 245 ----~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~ 277 (286)
T 1q7f_A 245 ----ESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYR 277 (286)
T ss_dssp ----EESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEE
T ss_pred ----cccCCCCcceeEEECCCCcEEEE-CCCCeEEEEE
Confidence 11122234789999999987666 6799999995
No 164
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.58 E-value=7.6e-14 Score=166.94 Aligned_cols=228 Identities=13% Similarity=0.076 Sum_probs=150.8
Q ss_pred CCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCC-----CeEEEEEcCCCCEEEEEeCC---
Q 004207 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS-----KVESCHFSPDGKLLATGGHD--- 576 (768)
Q Consensus 505 ~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~-----~I~sl~fSpdg~~LaSgs~D--- 576 (768)
.+.+++++ |++|++|....+. ....+.+|.. ....++|||||++|+.++.+
T Consensus 27 dg~~~~~~--~~~i~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~ 85 (740)
T 4a5s_A 27 DHEYLYKQ--ENNILVFNAEYGN-------------------SSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQ 85 (740)
T ss_dssp SSEEEEEE--TTEEEEEETTTCC-------------------EEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEEC
T ss_pred CCcEEEEc--CCcEEEEECCCCc-------------------eEEEEechhhhhhcccccceEECCCCCEEEEEECCeee
Confidence 44677776 8999999654431 1223444442 23458999999999998876
Q ss_pred ------CcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCe-------
Q 004207 577 ------KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV------- 643 (768)
Q Consensus 577 ------g~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V------- 643 (768)
+.+.+||+.++++. .+..|...+..++|||||+.||.+ .|+.|++||+.++.....+..++...+
T Consensus 86 ~r~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~ 163 (740)
T 4a5s_A 86 WRHSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDW 163 (740)
T ss_dssp SSSCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCH
T ss_pred EEEccceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccc
Confidence 56679999998865 466677889999999999999988 478999999988764332333333322
Q ss_pred ----------EEEEEeCCCCeEEEEEeCCC-----------------------------------cEEEEECCC---Ce-
Q 004207 644 ----------MSLDFHPSKEDLLCSCDNNS-----------------------------------EIRYWSINN---GS- 674 (768)
Q Consensus 644 ----------~slafsp~g~~lLaSgs~Dg-----------------------------------~I~iWDl~s---g~- 674 (768)
.++.|+|||+.++++...++ .|++||+.+ ++
T Consensus 164 v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~ 243 (740)
T 4a5s_A 164 VYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTN 243 (740)
T ss_dssp HHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSC
T ss_pred cccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCc
Confidence 35899999997765543222 588899988 73
Q ss_pred --eEEEEe------cCCCeeEEEEecCCCEEEEEEcC----CeEEEEECCCce----EeeecceeEEeecCCCceEEecc
Q 004207 675 --CAGVFK------CQSGATQMRFQPRLGRILAAAIE----NYISILDVETQV----CRLKLQTLELWNMTENKTLTLSA 738 (768)
Q Consensus 675 --~i~~~~------~~~~i~sl~fsp~~~~llags~D----g~I~IwD~~t~~----~~~~~~~I~iwd~~~~~~~~l~~ 738 (768)
...... ....+..++|+|++..++..... ..|.+||+.++. |.... .+....
T Consensus 244 ~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~------------~l~~~~ 311 (740)
T 4a5s_A 244 ATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVAR------------QHIEMS 311 (740)
T ss_dssp CCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGG------------CEEEEC
T ss_pred ceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEE------------Eeeecc
Confidence 332221 23347889999998866655432 257788877765 22111 111124
Q ss_pred CCCCee-----EEEEeCCCCEEE-EEE-CCCc--EEEe
Q 004207 739 HDKLVS-----SLAASTVNGMVA-SAS-HDKC--VKIW 767 (768)
Q Consensus 739 H~~~I~-----sla~spdg~~La-Sgs-~DG~--V~IW 767 (768)
|...|. .++|+|||+.|+ ..+ .+|. |++|
T Consensus 312 ~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~ 349 (740)
T 4a5s_A 312 TTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYF 349 (740)
T ss_dssp SSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEE
T ss_pred CCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEE
Confidence 554444 788999999776 665 4554 4444
No 165
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.57 E-value=1.8e-14 Score=172.34 Aligned_cols=207 Identities=13% Similarity=0.085 Sum_probs=152.5
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCC-----EEEEEEcCCCCEEEEEeCC---------CcE
Q 004207 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW-----ITDVRFSPSLSRLATSSAD---------RTV 621 (768)
Q Consensus 556 ~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~-----V~sl~fspdg~~LaTgs~D---------gtI 621 (768)
....++.|+|||.+|+++ |+.|++||+.++++...+.+|... ..++.|||||++|+.++.+ +.+
T Consensus 17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~ 94 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASY 94 (740)
T ss_dssp CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEE
Confidence 346689999999999886 899999999999988888777543 2447899999999998876 556
Q ss_pred EEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CC-----------------
Q 004207 622 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QS----------------- 683 (768)
Q Consensus 622 rVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~----------------- 683 (768)
.+||+.+++. ..+..|...+..++|+|||+.++++ .|+.|++||+.++........ ..
T Consensus 95 ~~~d~~~~~~--~~l~~~~~~~~~~~~SPdG~~la~~--~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~ 170 (740)
T 4a5s_A 95 DIYDLNKRQL--ITEERIPNNTQWVTWSPVGHKLAYV--WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVF 170 (740)
T ss_dssp EEEETTTTEE--CCSSCCCTTEEEEEECSSTTCEEEE--ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTS
T ss_pred EEEECCCCcE--EEcccCCCcceeeEECCCCCEEEEE--ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhc
Confidence 7999998763 4466677889999999999977654 378999999988776543221 11
Q ss_pred -CeeEEEEecCCCEEEEEEcCCe-EEEEECCCceE-------ee-----------ecceeEEeecCC---C---ceEEec
Q 004207 684 -GATQMRFQPRLGRILAAAIENY-ISILDVETQVC-------RL-----------KLQTLELWNMTE---N---KTLTLS 737 (768)
Q Consensus 684 -~i~sl~fsp~~~~llags~Dg~-I~IwD~~t~~~-------~~-----------~~~~I~iwd~~~---~---~~~~l~ 737 (768)
....+.|+|+|.+|+.++.|.. |.+|++..... .. ....|.+||+.+ + +...+.
T Consensus 171 ~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~ 250 (740)
T 4a5s_A 171 SAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQIT 250 (740)
T ss_dssp SSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEEC
T ss_pred CCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEec
Confidence 1134899999999998876544 77776531110 00 011688999988 7 555554
Q ss_pred c------CCCCeeEEEEeCCCCEEEEEEC----CCcEEEeC
Q 004207 738 A------HDKLVSSLAASTVNGMVASASH----DKCVKIWK 768 (768)
Q Consensus 738 ~------H~~~I~sla~spdg~~LaSgs~----DG~V~IWD 768 (768)
. |...|..++|+||+++++.... +..|++||
T Consensus 251 ~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d 291 (740)
T 4a5s_A 251 APASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICD 291 (740)
T ss_dssp CCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEE
T ss_pred CCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEE
Confidence 3 8888999999999996665543 33677775
No 166
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.57 E-value=9.6e-14 Score=160.75 Aligned_cols=182 Identities=10% Similarity=0.010 Sum_probs=136.9
Q ss_pred eEEEEEcCCCCE-EEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCC----CcEEEEECCCCCee
Q 004207 558 VESCHFSPDGKL-LATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD----RTVRVWDTENPDYS 632 (768)
Q Consensus 558 I~sl~fSpdg~~-LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~D----gtIrVWDl~t~~~~ 632 (768)
+...+|+||++. +++.+.++.+.|||+.+++.......+. .+++|+|||++|++++.| +.|++||+.+++.
T Consensus 112 ~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~- 187 (582)
T 3o4h_A 112 MRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGL- 187 (582)
T ss_dssp BEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCC-
T ss_pred ceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCc-
Confidence 456788888863 3333444556699999988765554333 789999999999988877 7899999988764
Q ss_pred EEEeecCCCCeEEEEEeCCCCeEEEEEeCCC--cEEEEECCCCeeEEEEec-CCCeeEEE--------EecCCCEEEEEE
Q 004207 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKC-QSGATQMR--------FQPRLGRILAAA 701 (768)
Q Consensus 633 ~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg--~I~iWDl~sg~~i~~~~~-~~~i~sl~--------fsp~~~~llags 701 (768)
..+..|...+.+++|+|||+.++ +++.++ .|++||+.++++. .+.. ...+..++ |+|++..+++++
T Consensus 188 -~~l~~~~~~~~~~~~SpDG~~l~-~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~ 264 (582)
T 3o4h_A 188 -RVFDSGEGSFSSASISPGMKVTA-GLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVAR 264 (582)
T ss_dssp -EEECCSSCEEEEEEECTTSCEEE-EEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEE
T ss_pred -eEeecCCCccccceECCCCCEEE-EccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEE
Confidence 46778888999999999998666 777788 8999999988877 4443 23345555 999997788888
Q ss_pred cCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCc---EEEeC
Q 004207 702 IENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKC---VKIWK 768 (768)
Q Consensus 702 ~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~---V~IWD 768 (768)
.++.+++|++ ++... .+.+.|.+++|+ ++.++++++.+.. |.+||
T Consensus 265 ~~g~~~l~~~--g~~~~-------------------~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d 312 (582)
T 3o4h_A 265 REGRSAVFID--GERVE-------------------APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLP 312 (582)
T ss_dssp ETTEEEEEET--TEEEC-------------------CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEET
T ss_pred cCCcEEEEEE--CCeec-------------------cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEc
Confidence 9999999998 33211 123568899999 8988888887743 55554
No 167
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.56 E-value=2.5e-13 Score=147.70 Aligned_cols=203 Identities=10% Similarity=0.007 Sum_probs=146.0
Q ss_pred EEEecCCCCCeEE-----EEEcCCCCEEEEEeC-CCc--EEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCC
Q 004207 548 FQLIPASTSKVES-----CHFSPDGKLLATGGH-DKK--AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR 619 (768)
Q Consensus 548 ~~~l~~H~~~I~s-----l~fSpdg~~LaSgs~-Dg~--I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~Dg 619 (768)
+..+..|...+.. .+|+|||++|+.++. ++. |.+||+.+++......++...+.+++|+||+++|+.++.++
T Consensus 23 ~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~ 102 (388)
T 3pe7_A 23 VTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGR 102 (388)
T ss_dssp EEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTT
T ss_pred eEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCC
Confidence 4455566655555 889999999998887 663 88889999888877777766666788999999999999999
Q ss_pred cEEEEECCCCCeeEEEeecCCCCeEEEE--EeCCCCeEEEEE---------------------eCCCcEEEEECCCCeeE
Q 004207 620 TVRVWDTENPDYSLRTFTGHSTTVMSLD--FHPSKEDLLCSC---------------------DNNSEIRYWSINNGSCA 676 (768)
Q Consensus 620 tIrVWDl~t~~~~~~~~~~h~~~V~sla--fsp~g~~lLaSg---------------------s~Dg~I~iWDl~sg~~i 676 (768)
.|++||+.+++. ...+..+...+.... +++++..+++.. ..+..|++||+.+++..
T Consensus 103 ~l~~~d~~~g~~-~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~ 181 (388)
T 3pe7_A 103 NLMRVDLATLEE-NVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGEST 181 (388)
T ss_dssp EEEEEETTTCCE-EEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEE
T ss_pred eEEEEECCCCcc-eeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceE
Confidence 999999998775 444454555554444 478887555321 23468999999999877
Q ss_pred EEEecCCCeeEEEEec-CCCEEEEEEcCC------eEEEEECCCceEeeecceeEEeecCCCceEEeccCC--CCeeEEE
Q 004207 677 GVFKCQSGATQMRFQP-RLGRILAAAIEN------YISILDVETQVCRLKLQTLELWNMTENKTLTLSAHD--KLVSSLA 747 (768)
Q Consensus 677 ~~~~~~~~i~sl~fsp-~~~~llags~Dg------~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~--~~I~sla 747 (768)
........+..+.|+| ++..|+.+..++ .|.++|..+. ....+..+. ..+..++
T Consensus 182 ~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~-----------------~~~~l~~~~~~~~~~~~~ 244 (388)
T 3pe7_A 182 VILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGT-----------------NMRKVKTHAEGESCTHEF 244 (388)
T ss_dssp EEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSC-----------------CCEESCCCCTTEEEEEEE
T ss_pred EeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCC-----------------ceEEeeeCCCCcccccce
Confidence 7666677789999999 988888777532 4555555432 222333333 2477889
Q ss_pred EeCCCCEEEEEEC-CC----cEEEeC
Q 004207 748 ASTVNGMVASASH-DK----CVKIWK 768 (768)
Q Consensus 748 ~spdg~~LaSgs~-DG----~V~IWD 768 (768)
|+|+|+.|+..+. ++ .|++||
T Consensus 245 ~spdg~~l~~~~~~~~~~~~~l~~~d 270 (388)
T 3pe7_A 245 WVPDGSALVYVSYLKGSPDRFIYSAD 270 (388)
T ss_dssp ECTTSSCEEEEEEETTCCCEEEEEEC
T ss_pred ECCCCCEEEEEecCCCCCcceEEEEe
Confidence 9999997765443 22 388886
No 168
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.54 E-value=1.4e-14 Score=171.97 Aligned_cols=203 Identities=13% Similarity=0.090 Sum_probs=142.3
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCC---CEEEEEEcCCCCEEEEEeC---------CCcEEEEECC
Q 004207 560 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ---WITDVRFSPSLSRLATSSA---------DRTVRVWDTE 627 (768)
Q Consensus 560 sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~---~V~sl~fspdg~~LaTgs~---------DgtIrVWDl~ 627 (768)
+++|+|||.++++ +.|+.|++||+.+++....+..|.. .|.+++|+|||++|++++. +++|++||+.
T Consensus 20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 20 FPNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp CCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred ccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence 6899999965554 4699999999999998877765543 3899999999999999876 7899999998
Q ss_pred CCCeeE-EEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecC-C------------------CeeE
Q 004207 628 NPDYSL-RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-S------------------GATQ 687 (768)
Q Consensus 628 t~~~~~-~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~-~------------------~i~s 687 (768)
+++... ..+ ...+.+++|+|+|+.++++ . ++.|++||+.++++....... . ...+
T Consensus 99 ~g~~~~~~~l---~~~~~~~~~SPDG~~la~~-~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~ 173 (719)
T 1z68_A 99 NGEFVRGNEL---PRPIQYLCWSPVGSKLAYV-Y-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYA 173 (719)
T ss_dssp TTEECCSSCC---CSSBCCEEECSSTTCEEEE-E-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCC
T ss_pred CCccccceec---CcccccceECCCCCEEEEE-E-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCccc
Confidence 865310 122 2568899999999876644 3 789999999988765433211 1 1248
Q ss_pred EEEecCCCEEEEEEcC-CeEEEEECCCc-----eEee-----------ecceeEEeecCCCceE---E------eccCCC
Q 004207 688 MRFQPRLGRILAAAIE-NYISILDVETQ-----VCRL-----------KLQTLELWNMTENKTL---T------LSAHDK 741 (768)
Q Consensus 688 l~fsp~~~~llags~D-g~I~IwD~~t~-----~~~~-----------~~~~I~iwd~~~~~~~---~------l~~H~~ 741 (768)
++|+|+|.+|++++.| +.+.+|.+... .... ....|.+||+.++... . +.+|..
T Consensus 174 ~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~ 253 (719)
T 1z68_A 174 LWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDY 253 (719)
T ss_dssp EEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCE
T ss_pred EEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcc
Confidence 9999999999988765 33333322100 0000 1115778888776641 2 236888
Q ss_pred CeeEEEEeCCCCEEEEEECC--C--cEEEeC
Q 004207 742 LVSSLAASTVNGMVASASHD--K--CVKIWK 768 (768)
Q Consensus 742 ~I~sla~spdg~~LaSgs~D--G--~V~IWD 768 (768)
.|.+++|+||+.++++.... + .|.+||
T Consensus 254 ~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d 284 (719)
T 1z68_A 254 YFSWLTWVTDERVCLQWLKRVQNVSVLSICD 284 (719)
T ss_dssp EEEEEEESSSSEEEEEEEESSTTEEEEEEEE
T ss_pred eEEEeEEeCCCeEEEEEeccccCeEEEEEEc
Confidence 89999999998777775432 2 366664
No 169
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.52 E-value=3e-12 Score=136.58 Aligned_cols=210 Identities=10% Similarity=0.089 Sum_probs=148.6
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCC----CcEEE
Q 004207 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD----RTVRV 623 (768)
Q Consensus 548 ~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~D----gtIrV 623 (768)
+..+..+...+.+++|+++|++++++..++.|.+||.++++.......+...+.+++|+++++++++...+ +.|.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~ 116 (333)
T 2dg1_A 37 WLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFA 116 (333)
T ss_dssp EEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEE
T ss_pred eEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEE
Confidence 44555677778999999999988888889999999998887765554566789999999999888877666 68999
Q ss_pred EECCCCCeeEEEee--cCCCCeEEEEEeCCCCeEEEEEeC------CCcEEEEECCCCeeEEEEecCCCeeEEEEecCCC
Q 004207 624 WDTENPDYSLRTFT--GHSTTVMSLDFHPSKEDLLCSCDN------NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLG 695 (768)
Q Consensus 624 WDl~t~~~~~~~~~--~h~~~V~slafsp~g~~lLaSgs~------Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~ 695 (768)
||.+++... ..+. .+...+.+++++|++. ++++... .+.|..||..+++..........+..++|+|++.
T Consensus 117 ~d~~~~~~~-~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~ 194 (333)
T 2dg1_A 117 ATENGDNLQ-DIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEK 194 (333)
T ss_dssp ECTTSCSCE-EEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSS
T ss_pred EeCCCCEEE-EEEccCccCCcccceEECCCCC-EEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCC
Confidence 999876642 2222 2445789999999986 4444432 3567777766555544434345678899999988
Q ss_pred EEEEEE-cCCeEEEEECCC-ceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 696 RILAAA-IENYISILDVET-QVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 696 ~llags-~Dg~I~IwD~~t-~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
.++++. .++.|.+||+.+ +.....+.. .+ ...+.++ ..+..+++++++.++++...++.|.+||
T Consensus 195 ~l~v~~~~~~~i~~~d~~~~g~~~~~~~~-~~-------~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d 260 (333)
T 2dg1_A 195 VLWVTETTANRLHRIALEDDGVTIQPFGA-TI-------PYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFN 260 (333)
T ss_dssp EEEEEEGGGTEEEEEEECTTSSSEEEEEE-EE-------EEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEEC
T ss_pred EEEEEeCCCCeEEEEEecCCCcCcccccc-eE-------EEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEEC
Confidence 776655 578999999864 221111100 00 0111122 4578899999999888887888999986
No 170
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.49 E-value=1.2e-12 Score=143.18 Aligned_cols=211 Identities=10% Similarity=0.144 Sum_probs=140.3
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEeC----------CCcEEEEECCCCeEEEEeccC------CCCEEEEEEcCCCCEEE
Q 004207 550 LIPASTSKVESCHFSPDGKLLATGGH----------DKKAVLWCTESFTVKSTLEEH------TQWITDVRFSPSLSRLA 613 (768)
Q Consensus 550 ~l~~H~~~I~sl~fSpdg~~LaSgs~----------Dg~I~VWdl~t~~~~~tl~~h------~~~V~sl~fspdg~~La 613 (768)
.+..+..+ .++|+|||++|++++. ++.|.+||..+++.+.++... ......++|+|++++|+
T Consensus 46 ~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~ 123 (361)
T 2oiz_A 46 MVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIV 123 (361)
T ss_dssp EEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEE
T ss_pred EecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEE
Confidence 34444444 8999999999998863 678999999999988877542 23567899999999999
Q ss_pred EEeC--CCcEEEEECCCCCeeEEE-eecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCC-CeeEEEEe------cCC
Q 004207 614 TSSA--DRTVRVWDTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFK------CQS 683 (768)
Q Consensus 614 Tgs~--DgtIrVWDl~t~~~~~~~-~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~s-g~~i~~~~------~~~ 683 (768)
++.. +++|.+||+.+++. +.. +. +. ....+.+.|++...+++.+.||.+.+|++.. ++...... ...
T Consensus 124 v~n~~~~~~v~v~d~~~~~~-~~~~i~-~~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~ 200 (361)
T 2oiz_A 124 LQNASPATSIGIVDVAKGDY-VEDVTA-AA-GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKD 200 (361)
T ss_dssp EEEESSSEEEEEEETTTTEE-EEEEGG-GT-TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTT
T ss_pred EECCCCCCeEEEEECCCCcE-EEEEec-CC-CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCC
Confidence 9874 57999999998754 444 33 22 2334667888766777888899999998865 54442211 111
Q ss_pred CeeEEEEecCCCEEEEEEcCCeEEEEECCCceE--------------------------e-ee-----------------
Q 004207 684 GATQMRFQPRLGRILAAAIENYISILDVETQVC--------------------------R-LK----------------- 719 (768)
Q Consensus 684 ~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~--------------------------~-~~----------------- 719 (768)
....+.+++++..++..+.++.|.++|+..... . ..
T Consensus 201 ~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~ 280 (361)
T 2oiz_A 201 DPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGT 280 (361)
T ss_dssp SCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTC
T ss_pred CceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCccc
Confidence 111222344444555555555566665532100 0 00
Q ss_pred ----cceeEEeecCCCceE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 720 ----LQTLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 720 ----~~~I~iwd~~~~~~~-~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
-..|.+||..+.+.+ ++..+. +.+|+|+|++++|++++. +.|.|||
T Consensus 281 ~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D 331 (361)
T 2oiz_A 281 HKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYD 331 (361)
T ss_dssp TTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEE
T ss_pred ccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEE
Confidence 013556676666655 344454 999999999999998887 9999997
No 171
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.48 E-value=7.3e-13 Score=155.39 Aligned_cols=196 Identities=11% Similarity=0.078 Sum_probs=132.3
Q ss_pred EEEEc--CCCCE-EEEEeC-CCcEEEEECC--C-CeEEEEecc-----CCCCEEEEEEcCCCCEEEEEeCC---------
Q 004207 560 SCHFS--PDGKL-LATGGH-DKKAVLWCTE--S-FTVKSTLEE-----HTQWITDVRFSPSLSRLATSSAD--------- 618 (768)
Q Consensus 560 sl~fS--pdg~~-LaSgs~-Dg~I~VWdl~--t-~~~~~tl~~-----h~~~V~sl~fspdg~~LaTgs~D--------- 618 (768)
.+.|+ |||++ |+.++. +..|.+|++. + ++ ...+.. |...+.+++|+|||+.|++++.|
T Consensus 81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~ 159 (662)
T 3azo_A 81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDV 159 (662)
T ss_dssp CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCE
T ss_pred cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCc
Confidence 45555 99998 776554 5567777765 2 33 445555 66788999999999999998877
Q ss_pred -CcEEEEECCC------CCeeEEEee-cCCCCeEEEEEeCCCCeEEEEEeCC-------CcEEEEECC-CC---eeEEEE
Q 004207 619 -RTVRVWDTEN------PDYSLRTFT-GHSTTVMSLDFHPSKEDLLCSCDNN-------SEIRYWSIN-NG---SCAGVF 679 (768)
Q Consensus 619 -gtIrVWDl~t------~~~~~~~~~-~h~~~V~slafsp~g~~lLaSgs~D-------g~I~iWDl~-sg---~~i~~~ 679 (768)
..|++||+.+ +. ...+. .+...+.+++|+|||+.+++++... ..|++||+. ++ +.....
T Consensus 160 ~~~i~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~ 237 (662)
T 3azo_A 160 RRFLAAVPLDGSAAADRSA--VRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLL 237 (662)
T ss_dssp EEEEEEEETTSTTTTCGGG--SEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEE
T ss_pred eeEEEEEECCCCccccCCc--eeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeC
Confidence 5899999987 43 34555 5667788899999999776555432 479999999 57 444444
Q ss_pred ec-CCCeeEEEEecCCCEEEEEEcCC--eEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEE
Q 004207 680 KC-QSGATQMRFQPRLGRILAAAIEN--YISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVA 756 (768)
Q Consensus 680 ~~-~~~i~sl~fsp~~~~llags~Dg--~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~La 756 (768)
.. ...+..++|+|++..++++..++ .|.+||+.++...... .... .. ....-.-.+.+++|++++.+++
T Consensus 238 ~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~------~~~~-~~-~~p~w~~~~~~~~~~~~~~~~~ 309 (662)
T 3azo_A 238 GGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLC------RREE-EF-AGPLWTPGMRWFAPLANGLIAV 309 (662)
T ss_dssp EETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESS------CCSS-BS-SCCCCSTTCCSEEECTTSCEEE
T ss_pred CCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecc------cccc-cc-cCccccccCceEeEeCCCEEEE
Confidence 43 46788999999999666666667 5666665444322110 0000 00 0000001156789999999999
Q ss_pred EEECCCcEEEe
Q 004207 757 SASHDKCVKIW 767 (768)
Q Consensus 757 Sgs~DG~V~IW 767 (768)
+++. +.++||
T Consensus 310 ~~~~-~~~~l~ 319 (662)
T 3azo_A 310 VHGK-GAAVLG 319 (662)
T ss_dssp EEBS-SSCEEE
T ss_pred EEEc-CccEEE
Confidence 9998 999988
No 172
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.47 E-value=1e-11 Score=130.60 Aligned_cols=219 Identities=12% Similarity=0.038 Sum_probs=151.8
Q ss_pred cCCCC-EEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 004207 503 TDMDR-FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVL 581 (768)
Q Consensus 503 ~~~~~-~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~V 581 (768)
++.+. ++.++..++.|..|.... + +..+..+...+.+++|+++|+++++...++.|.+
T Consensus 36 d~~g~~l~~~~~~~~~i~~~~~~~----------------~-----~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~ 94 (296)
T 3e5z_A 36 VPARSAVIFSDVRQNRTWAWSDDG----------------Q-----LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLER 94 (296)
T ss_dssp EGGGTEEEEEEGGGTEEEEEETTS----------------C-----EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEE
T ss_pred eCCCCEEEEEeCCCCEEEEEECCC----------------C-----eEEEECCCCCcceeeECCCCcEEEEecCCCeEEE
Confidence 33444 777888888888884321 1 1223356677999999999998887777789999
Q ss_pred EECCCCeEEEEeccC----CCCEEEEEEcCCCCEEEEEeC-----------------CCcEEEEECCCCCeeEEEeecCC
Q 004207 582 WCTESFTVKSTLEEH----TQWITDVRFSPSLSRLATSSA-----------------DRTVRVWDTENPDYSLRTFTGHS 640 (768)
Q Consensus 582 Wdl~t~~~~~tl~~h----~~~V~sl~fspdg~~LaTgs~-----------------DgtIrVWDl~t~~~~~~~~~~h~ 640 (768)
||..+++........ ...+.+++++|+|+++++.+. .+.|..|+.. +. +..+..+.
T Consensus 95 ~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~--~~~~~~~~ 171 (296)
T 3e5z_A 95 QREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT--LSAPIRDR 171 (296)
T ss_dssp ECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC--EEEEECCC
T ss_pred EcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC--EEEeecCC
Confidence 999887765443221 234678999999998887431 2345555544 33 44455566
Q ss_pred CCeEEEEEeCCCCeEEEEEeCCCcEEEEECC-CCee---EEEEe-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCce
Q 004207 641 TTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSC---AGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQV 715 (768)
Q Consensus 641 ~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~-sg~~---i~~~~-~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~ 715 (768)
..+..++|+|+++.+ ++.+.++.|.+||+. ++.. ...+. ....+..+++++++..+++. ++.|.+||... .
T Consensus 172 ~~~~gi~~s~dg~~l-v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~g-~ 247 (296)
T 3e5z_A 172 VKPNGLAFLPSGNLL-VSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPDG-D 247 (296)
T ss_dssp SSEEEEEECTTSCEE-EEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTTS-C
T ss_pred CCCccEEECCCCCEE-EEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCCC-C
Confidence 778999999999876 788888999999997 5554 33331 13446789999998755444 88899998763 2
Q ss_pred EeeecceeEEeecCCCceEEeccCCCCeeEEEE-eCCCCEEEEEECCCcEEE
Q 004207 716 CRLKLQTLELWNMTENKTLTLSAHDKLVSSLAA-STVNGMVASASHDKCVKI 766 (768)
Q Consensus 716 ~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~-spdg~~LaSgs~DG~V~I 766 (768)
.. ..+..+.. +++++| .++++.|++++.++.+++
T Consensus 248 ~~----------------~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~l~~~ 282 (296)
T 3e5z_A 248 EL----------------GRVLTPQT-TSNLCFGGPEGRTLYMTVSTEFWSI 282 (296)
T ss_dssp EE----------------EEEECSSC-CCEEEEESTTSCEEEEEETTEEEEE
T ss_pred EE----------------EEEECCCC-ceeEEEECCCCCEEEEEcCCeEEEE
Confidence 21 12234555 899999 588899999998876654
No 173
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.46 E-value=1.2e-12 Score=141.92 Aligned_cols=208 Identities=10% Similarity=0.030 Sum_probs=141.6
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEE-------------------EEEcCCCCEEEEE---
Q 004207 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITD-------------------VRFSPSLSRLATS--- 615 (768)
Q Consensus 558 I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~s-------------------l~fspdg~~LaTg--- 615 (768)
+.++.|+|||++|+.++.++.|++||+.+++.......+...... +.|+|+++.++.+
T Consensus 83 ~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~ 162 (396)
T 3c5m_A 83 TFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFY 162 (396)
T ss_dssp TTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHH
T ss_pred cccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeec
Confidence 334789999999999999999999999988876665545443333 4567887776654
Q ss_pred --eCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeC-CCCeEEEEEeCC-----CcEEEEECCCCeeEEEEec--CCCe
Q 004207 616 --SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHP-SKEDLLCSCDNN-----SEIRYWSINNGSCAGVFKC--QSGA 685 (768)
Q Consensus 616 --s~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp-~g~~lLaSgs~D-----g~I~iWDl~sg~~i~~~~~--~~~i 685 (768)
..+..|++||+.+++. ..+..+...+..+.|+| ++..++++.... ..|.+||+..+........ ...+
T Consensus 163 ~~~~~~~l~~~d~~~g~~--~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~ 240 (396)
T 3c5m_A 163 HTNPTCRLIKVDIETGEL--EVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESC 240 (396)
T ss_dssp HTCCCEEEEEEETTTCCE--EEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEE
T ss_pred cCCCcceEEEEECCCCcE--EeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccc
Confidence 3567899999988764 23334667899999999 666555544322 4688999876654333222 1236
Q ss_pred eEEEEecCCCEEEEEEcC-----CeEEEEECCCceEee--e-----------c--------------------------c
Q 004207 686 TQMRFQPRLGRILAAAIE-----NYISILDVETQVCRL--K-----------L--------------------------Q 721 (768)
Q Consensus 686 ~sl~fsp~~~~llags~D-----g~I~IwD~~t~~~~~--~-----------~--------------------------~ 721 (768)
..++|+|++.+|++++.+ +.|++||+.++.... . . .
T Consensus 241 ~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~ 320 (396)
T 3c5m_A 241 THEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPPCSHLMSNFDGSLMVGDGCDAPVDVADADSYNIENDP 320 (396)
T ss_dssp EEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCSEEEEEECSSSSEEEEEECCC----------CCCCCC
T ss_pred cceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCCCCCCccCCCCceEEEecCCcceeeccccccccCCCC
Confidence 778999999988777654 449999987653211 0 0 2
Q ss_pred eeEEeecCCCceEEeccCCC-----------CeeEEEEeCCCCEEEEEEC-CCcEEEe
Q 004207 722 TLELWNMTENKTLTLSAHDK-----------LVSSLAASTVNGMVASASH-DKCVKIW 767 (768)
Q Consensus 722 ~I~iwd~~~~~~~~l~~H~~-----------~I~sla~spdg~~LaSgs~-DG~V~IW 767 (768)
.|.+||+.++....+..|.. .+.+++|+|++++|+.++. ++...||
T Consensus 321 ~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~ 378 (396)
T 3c5m_A 321 FLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIY 378 (396)
T ss_dssp EEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEE
T ss_pred cEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEE
Confidence 35566766665555555544 2567899999998877765 5666665
No 174
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.46 E-value=8.3e-12 Score=128.63 Aligned_cols=194 Identities=6% Similarity=-0.065 Sum_probs=138.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEE
Q 004207 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 635 (768)
Q Consensus 556 ~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~ 635 (768)
..+.+++++++|+++++.. ++.|.+||..+.............+.+++++++++++++...++.|.+|+..+... ...
T Consensus 67 ~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~-~~~ 144 (270)
T 1rwi_B 67 YQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ-TVL 144 (270)
T ss_dssp CSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSC-EEC
T ss_pred CCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCcee-Eee
Confidence 4578899999999666655 88999999876544322222335789999999998887777788999998665443 222
Q ss_pred eecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCc
Q 004207 636 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQ 714 (768)
Q Consensus 636 ~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~ 714 (768)
.......+.+|++++++. ++++...++.|.+||............ ...+..+++++++..+++...++.|.+||..+.
T Consensus 145 ~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~ 223 (270)
T 1rwi_B 145 PFTGLNDPDGVAVDNSGN-VYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGST 223 (270)
T ss_dssp CCCSCCSCCCEEECTTCC-EEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCS
T ss_pred ccccCCCceeEEEeCCCC-EEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCC
Confidence 222334678999999886 666766678999999887654433222 256789999999855555556788999988654
Q ss_pred eEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 715 VCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 715 ~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
.... ....+...+.++++++++.++++...++.|++|+
T Consensus 224 ~~~~----------------~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~ 261 (270)
T 1rwi_B 224 TSTV----------------LPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLT 261 (270)
T ss_dssp CCEE----------------CCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEEC
T ss_pred ccee----------------eccCCCCCceeEEECCCCCEEEEECCCCEEEEEc
Confidence 3211 0112335689999999999888888899999985
No 175
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.46 E-value=2.5e-12 Score=150.81 Aligned_cols=194 Identities=9% Similarity=0.064 Sum_probs=136.9
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCC----------CcEEEEECCC------CeEEEEec-cCCCCEEEEEEcCCCCEEEEEe
Q 004207 554 STSKVESCHFSPDGKLLATGGHD----------KKAVLWCTES------FTVKSTLE-EHTQWITDVRFSPSLSRLATSS 616 (768)
Q Consensus 554 H~~~I~sl~fSpdg~~LaSgs~D----------g~I~VWdl~t------~~~~~tl~-~h~~~V~sl~fspdg~~LaTgs 616 (768)
|...+.+++|+|||+.|++++.| ..|++||+.+ ++.. .+. .+...+..++|+|||++|+.++
T Consensus 128 ~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~SpDG~~la~~~ 206 (662)
T 3azo_A 128 GGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVR-ELSDDAHRFVTGPRLSPDGRQAVWLA 206 (662)
T ss_dssp TCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSE-ESSCSCSSEECCCEECTTSSEEEEEE
T ss_pred CCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCcee-EEEecCCCcccCceECCCCCEEEEEE
Confidence 56678999999999999988877 5899999988 5543 555 5567788999999999999887
Q ss_pred CCC--------cEEEEECC-CCC--eeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCC--cEEEEECCCCeeEEEEecCC
Q 004207 617 ADR--------TVRVWDTE-NPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKCQS 683 (768)
Q Consensus 617 ~Dg--------tIrVWDl~-t~~--~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg--~I~iWDl~sg~~i~~~~~~~ 683 (768)
.++ .|++||++ ++. .......+|...+..++|+|+|+ ++++++.++ .|.+||+.+++....+..+.
T Consensus 207 ~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~-l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~ 285 (662)
T 3azo_A 207 WDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGS-LIVATDRTGWWNLHRVDPATGAATQLCRREE 285 (662)
T ss_dssp ECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSC-EEEEECTTSSCEEEEECTTTCCEEESSCCSS
T ss_pred CCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCe-EEEEECCCCCeEEEEEECCCCceeecccccc
Confidence 553 79999998 452 33444455678899999999998 777888888 67777776776554433322
Q ss_pred C---------eeEEEEecCCCEEEEEEcCCeEEEE--ECCCceEeeecceeEEeecCCCceEEeccCCCCeeEE-EEeCC
Q 004207 684 G---------ATQMRFQPRLGRILAAAIENYISIL--DVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSL-AASTV 751 (768)
Q Consensus 684 ~---------i~sl~fsp~~~~llags~Dg~I~Iw--D~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sl-a~spd 751 (768)
. +..++|++++..++++.. +.+.|| |+.++ ....+..|...+..+ +++.+
T Consensus 286 ~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~-----------------~~~~l~~~~~~~~~~~s~~~~ 347 (662)
T 3azo_A 286 EFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESG-----------------ELVDAAGPWTEWAATLTVSGT 347 (662)
T ss_dssp BSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTT-----------------EEEECCSSCCEEEEEEEEETT
T ss_pred cccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCC-----------------cEEEecCCCCeEEEEEecCCC
Confidence 2 456888888887777777 877777 43332 233344566667766 55544
Q ss_pred CCEEEEEECCCcEEEe
Q 004207 752 NGMVASASHDKCVKIW 767 (768)
Q Consensus 752 g~~LaSgs~DG~V~IW 767 (768)
.-++++++.+....||
T Consensus 348 ~~~~~~~~~~~~~~i~ 363 (662)
T 3azo_A 348 RAVGVAASPRTAYEVV 363 (662)
T ss_dssp EEEEEEEETTEEEEEE
T ss_pred EEEEEEcCCCCCCEEE
Confidence 3345555666555554
No 176
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.46 E-value=3.6e-11 Score=128.16 Aligned_cols=228 Identities=8% Similarity=0.022 Sum_probs=150.4
Q ss_pred ccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----C
Q 004207 502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD----K 577 (768)
Q Consensus 502 l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~D----g 577 (768)
+++.+.+++++..++.|.+|..... .+.. ....+...|.+++|+++|++++++..+ +
T Consensus 52 ~~~~g~l~~~~~~~~~i~~~d~~~~-----------------~~~~--~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~ 112 (333)
T 2dg1_A 52 FDRQGQLFLLDVFEGNIFKINPETK-----------------EIKR--PFVSHKANPAAIKIHKDGRLFVCYLGDFKSTG 112 (333)
T ss_dssp ECTTSCEEEEETTTCEEEEECTTTC-----------------CEEE--EEECSSSSEEEEEECTTSCEEEEECTTSSSCC
T ss_pred ECCCCCEEEEECCCCEEEEEeCCCC-----------------cEEE--EeeCCCCCcceEEECCCCcEEEEeCCCCCCCc
Confidence 3455667777888888888843221 1111 112455679999999999988877666 6
Q ss_pred cEEEEECCCCeEEEEec--cCCCCEEEEEEcCCCCEEEEEeC------CCcEEEEECCCCCeeEEEeecCCCCeEEEEEe
Q 004207 578 KAVLWCTESFTVKSTLE--EHTQWITDVRFSPSLSRLATSSA------DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH 649 (768)
Q Consensus 578 ~I~VWdl~t~~~~~tl~--~h~~~V~sl~fspdg~~LaTgs~------DgtIrVWDl~t~~~~~~~~~~h~~~V~slafs 649 (768)
.|.+||.++++....+. .+...+.+++++|+++++++... .+.|..||.++++. ..+..+...+.+++|+
T Consensus 113 ~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~i~~~ 190 (333)
T 2dg1_A 113 GIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTV--TPIIQNISVANGIALS 190 (333)
T ss_dssp EEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCE--EEEEEEESSEEEEEEC
T ss_pred eEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEE--EEeecCCCcccceEEC
Confidence 89999998876653432 24457999999999988777654 24566666654443 2232334468899999
Q ss_pred CCCCeEEEEEeCCCcEEEEECCC-CeeEEEE------ec--CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeec
Q 004207 650 PSKEDLLCSCDNNSEIRYWSINN-GSCAGVF------KC--QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL 720 (768)
Q Consensus 650 p~g~~lLaSgs~Dg~I~iWDl~s-g~~i~~~------~~--~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~ 720 (768)
|+++.++++.+.++.|.+||+.+ +..+..+ .. ...+..+++++++..+++...++.|.+||... ...
T Consensus 191 ~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~g-~~~--- 266 (333)
T 2dg1_A 191 TDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKRG-YPI--- 266 (333)
T ss_dssp TTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTTS-CEE---
T ss_pred CCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECCCC-CEE---
Confidence 99887777777788999999964 3332211 11 23577899999988777666788999998843 221
Q ss_pred ceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECC
Q 004207 721 QTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD 761 (768)
Q Consensus 721 ~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~D 761 (768)
..+..... ..+|...+.+++|+++++.|++++.+
T Consensus 267 ---~~~~~~~~----~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 267 ---GQILIPGR----DEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp ---EEEECTTG----GGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred ---EEEEcCCC----ccccccCcceEEECCCCCEEEEEeCc
Confidence 11111100 01233368999999998777766655
No 177
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.45 E-value=1.5e-11 Score=128.38 Aligned_cols=196 Identities=8% Similarity=0.136 Sum_probs=142.6
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEec------cCCCCEEEEEE-cCCCCEEEEEeC-CCcEEEE
Q 004207 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE------EHTQWITDVRF-SPSLSRLATSSA-DRTVRVW 624 (768)
Q Consensus 553 ~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~------~h~~~V~sl~f-spdg~~LaTgs~-DgtIrVW 624 (768)
++-..+.++++++++.++++...++.|.+||.+ ++.+..+. ++...+.++++ .+++.++++... ++.|++|
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~ 105 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY 105 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence 455678999999999988888889999999987 56666653 23457899999 467666665533 8899999
Q ss_pred ECCCCCeeEEEee-cCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec---CCCeeEEEEecCCCEEEEE
Q 004207 625 DTENPDYSLRTFT-GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC---QSGATQMRFQPRLGRILAA 700 (768)
Q Consensus 625 Dl~t~~~~~~~~~-~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~---~~~i~sl~fsp~~~~llag 700 (768)
|. +++. +..+. .+...+.++++++++. ++++...++.|.+||.. ++.+..+.. ...+..+++++++..+++.
T Consensus 106 d~-~g~~-~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~ 181 (286)
T 1q7f_A 106 NQ-YGQF-VRKFGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISD 181 (286)
T ss_dssp CT-TSCE-EEEECTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEE
T ss_pred CC-CCcE-EEEecCccCCCceEEEEeCCCC-EEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEE
Confidence 94 4444 44443 3446789999999986 77677778899999964 666666643 2457899999997755555
Q ss_pred EcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCC-cEEEeC
Q 004207 701 AIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDK-CVKIWK 768 (768)
Q Consensus 701 s~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG-~V~IWD 768 (768)
..++.|.+||..... .. .+. ..++...+..|++++++.++++...++ .|.+||
T Consensus 182 ~~~~~i~~~~~~g~~-~~------~~~--------~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~ 235 (286)
T 1q7f_A 182 NRAHCVKVFNYEGQY-LR------QIG--------GEGITNYPIGVGINSNGEILIADNHNNFNLTIFT 235 (286)
T ss_dssp GGGTEEEEEETTCCE-EE------EES--------CTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC
T ss_pred CCCCEEEEEcCCCCE-EE------EEc--------cCCccCCCcEEEECCCCCEEEEeCCCCEEEEEEC
Confidence 668899999975421 11 110 012335688999999999888888776 999996
No 178
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.44 E-value=3.3e-11 Score=126.94 Aligned_cols=189 Identities=13% Similarity=0.057 Sum_probs=145.5
Q ss_pred CCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCC-CCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004207 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST-SKVESCHFSPDGKLLATGGHDKKAVLWC 583 (768)
Q Consensus 505 ~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~-~~I~sl~fSpdg~~LaSgs~Dg~I~VWd 583 (768)
.+.+|++++.|+.|.+|+..++ +.+..+..+. ..+.++.++|+|++|+ +.++.|.+||
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG-------------------~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d 62 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTK-------------------EIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMIT 62 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTT-------------------EEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEEC
T ss_pred CCcEEEeeCCCCEEEEEECCCC-------------------eEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEEC
Confidence 4678999999999999954333 1233344444 4689999999999888 4577899999
Q ss_pred CCCCeEEEEeccCC-CCEEEEEEcCCCCEEEEEeC-CCcEEEEECCCCCeeEEEee------cCCCCeEEEEEeCCCCeE
Q 004207 584 TESFTVKSTLEEHT-QWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDYSLRTFT------GHSTTVMSLDFHPSKEDL 655 (768)
Q Consensus 584 l~t~~~~~tl~~h~-~~V~sl~fspdg~~LaTgs~-DgtIrVWDl~t~~~~~~~~~------~h~~~V~slafsp~g~~l 655 (768)
. +++.+..+..+. ..+.++.+.+++++|++.+. ++.|..+|. +++. +..+. .+......+++.++|+ +
T Consensus 63 ~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~-l~~~~~~~~~~~~~~~~~~v~~~~~G~-~ 138 (276)
T 3no2_A 63 R-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEV-LSKTEFETGIERPHAQFRQINKNKKGN-Y 138 (276)
T ss_dssp T-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCE-EEEEEECCSCSSGGGSCSCCEECTTSC-E
T ss_pred C-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCE-EEEEeccCCCCcccccccCceECCCCC-E
Confidence 9 899999887653 47889999999999999887 777877776 3443 33332 1222455667888877 5
Q ss_pred EEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeee
Q 004207 656 LCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK 719 (768)
Q Consensus 656 LaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~ 719 (768)
+++...++.|.+||.. |+.+..+.....+..+.+.+++..++++..++.|..||..+++.+..
T Consensus 139 lv~~~~~~~v~~~d~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~ 201 (276)
T 3no2_A 139 LVPLFATSEVREIAPN-GQLLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRR 201 (276)
T ss_dssp EEEETTTTEEEEECTT-SCEEEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEE
T ss_pred EEEecCCCEEEEECCC-CCEEEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEE
Confidence 6688889999999998 99999998777777888899988888888888999999998766443
No 179
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.44 E-value=4.4e-13 Score=145.49 Aligned_cols=194 Identities=11% Similarity=-0.014 Sum_probs=133.1
Q ss_pred CeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeE
Q 004207 557 KVESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 633 (768)
Q Consensus 557 ~I~sl~fSpdg~~LaSgs~D---g~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~ 633 (768)
.+.+++|+|||++|+.+..+ ..|.+||+.+++.......+...+..+.|+||+++|+.++.++.|++||+.+++. .
T Consensus 37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~-~ 115 (396)
T 3c5m_A 37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEE-Q 115 (396)
T ss_dssp CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCE-E
T ss_pred eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCc-E
Confidence 37788999999998876543 3688899998876544443333333478999999999999999999999988764 3
Q ss_pred EEeecCCCCeEE-------------------EEEeCCCCeEEEEE----eCCCcEEEEECCCCeeEEEEecCCCeeEEEE
Q 004207 634 RTFTGHSTTVMS-------------------LDFHPSKEDLLCSC----DNNSEIRYWSINNGSCAGVFKCQSGATQMRF 690 (768)
Q Consensus 634 ~~~~~h~~~V~s-------------------lafsp~g~~lLaSg----s~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~f 690 (768)
.....+...... ++|+|+++.+++.. ..+..|++||+.+++..........+..+.|
T Consensus 116 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~ 195 (396)
T 3c5m_A 116 VIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIY 195 (396)
T ss_dssp EEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEE
T ss_pred EEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccceE
Confidence 333333332222 34567766554332 4567899999999887777666777899999
Q ss_pred ec-CCCEEEEEEcCC------eEEEEECCCceEeeecceeEEeecCCCceEEeccC--CCCeeEEEEeCCCCEEEEEECC
Q 004207 691 QP-RLGRILAAAIEN------YISILDVETQVCRLKLQTLELWNMTENKTLTLSAH--DKLVSSLAASTVNGMVASASHD 761 (768)
Q Consensus 691 sp-~~~~llags~Dg------~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H--~~~I~sla~spdg~~LaSgs~D 761 (768)
+| ++..|+.++.++ .|.+||+.+ +....+..+ ...+..++|+|++++|+.++.+
T Consensus 196 sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~-----------------~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~ 258 (396)
T 3c5m_A 196 RPFDDSTVGFCHEGPHDLVDARMWLVNEDG-----------------SNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYF 258 (396)
T ss_dssp ETTEEEEEEEEECSCSSSCSCCCEEEETTS-----------------CCCEESSCCCTTEEEEEEEECTTSSCEEEEEEE
T ss_pred CCCCCCEEEEEecCCCCCCCceEEEEECCC-----------------CceeEeeccCCCccccceEECCCCCEEEEEecC
Confidence 99 777777766432 355555543 222222222 2247889999999987777654
Q ss_pred -----CcEEEeC
Q 004207 762 -----KCVKIWK 768 (768)
Q Consensus 762 -----G~V~IWD 768 (768)
+.|++||
T Consensus 259 ~~~~~~~l~~~d 270 (396)
T 3c5m_A 259 KGQTDRVIYKAN 270 (396)
T ss_dssp TTTCCEEEEEEC
T ss_pred CCCccceEEEEE
Confidence 4488886
No 180
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.42 E-value=1.1e-11 Score=132.50 Aligned_cols=145 Identities=19% Similarity=0.230 Sum_probs=99.9
Q ss_pred CCeEEEEEcCCCCEEEEEeCC---C--cEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCC------------
Q 004207 556 SKVESCHFSPDGKLLATGGHD---K--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD------------ 618 (768)
Q Consensus 556 ~~I~sl~fSpdg~~LaSgs~D---g--~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~D------------ 618 (768)
..+.+++|||||++|+.++.+ + .|.+|++.+++.......+ . +.+++|+||++.|+.++.+
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~ 136 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDD 136 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcc
Confidence 458899999999998887654 3 3888899888766555433 3 9999999999988888642
Q ss_pred ---------------CcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCC-------cEEEEECCCCeeE
Q 004207 619 ---------------RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS-------EIRYWSINNGSCA 676 (768)
Q Consensus 619 ---------------gtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg-------~I~iWDl~sg~~i 676 (768)
..|++||+.+++. +..+.. . .+..++|+|+| +++++..+. ...||.+.+++..
T Consensus 137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~-~~~l~~-~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d~~~~~ 211 (347)
T 2gop_A 137 VPAWFDDLGFFDGEKTTFWIFDTESEEV-IEEFEK-P-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWEDGKEE 211 (347)
T ss_dssp CCCC---------CEEEEEEEETTTTEE-EEEEEE-E-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEETTEEE
T ss_pred cceeecCcccccCccceEEEEECCCCeE-EeeecC-C-CcccccCCCCe--EEEEEecccccccccccccEEEeCCCceE
Confidence 5799999987664 233333 3 78899999998 555654432 3344443356554
Q ss_pred EEEecCCCeeEEEEecCCCEEEEEEcCC--------eEEEEE
Q 004207 677 GVFKCQSGATQMRFQPRLGRILAAAIEN--------YISILD 710 (768)
Q Consensus 677 ~~~~~~~~i~sl~fsp~~~~llags~Dg--------~I~IwD 710 (768)
..... ..+.. ++|++.+|++++.+. .|.+||
T Consensus 212 ~l~~~-~~~~~--~spdg~~l~~~~~~~~~~~~~~~~l~~~d 250 (347)
T 2gop_A 212 KMFEK-VSFYA--VDSDGERILLYGKPEKKYMSEHNKLYIYD 250 (347)
T ss_dssp EEEEE-ESEEE--EEECSSCEEEEECCSSSCCCSSCEEEEEC
T ss_pred EeccC-cceee--ECCCCCEEEEEEccccCCccccceEEEEC
Confidence 44433 33433 499999888877543 566666
No 181
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.39 E-value=3.6e-11 Score=126.37 Aligned_cols=199 Identities=10% Similarity=0.051 Sum_probs=141.3
Q ss_pred EecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004207 550 LIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 628 (768)
Q Consensus 550 ~l~~H~~~I~sl~fSpdg~-~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t 628 (768)
.+..+.....+++|+|+++ +++++..++.|.+||..++ ...+..+...+.+++|+++++++++...++.|.+||..+
T Consensus 22 ~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~ 99 (296)
T 3e5z_A 22 RLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPG 99 (296)
T ss_dssp EEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTT
T ss_pred EEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCC
Confidence 3445666789999999998 7888888999999999887 556666778899999999999888777778999999977
Q ss_pred CCeeEEEeec----CCCCeEEEEEeCCCCeEEEE----Ee-------------CCCcEEEEECCCCeeEEEEecCCCeeE
Q 004207 629 PDYSLRTFTG----HSTTVMSLDFHPSKEDLLCS----CD-------------NNSEIRYWSINNGSCAGVFKCQSGATQ 687 (768)
Q Consensus 629 ~~~~~~~~~~----h~~~V~slafsp~g~~lLaS----gs-------------~Dg~I~iWDl~sg~~i~~~~~~~~i~s 687 (768)
++... .... ....+.+++++|+|. ++++ |. ..+.|..||.. ++.............
T Consensus 100 g~~~~-~~~~~~~~~~~~~~~i~~d~~G~-l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~g 176 (296)
T 3e5z_A 100 GEWES-IADSFEGKKLNSPNDVCLAPDGS-LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNG 176 (296)
T ss_dssp CCEEE-EECEETTEECCCCCCEEECTTSC-EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEEE
T ss_pred CcEEE-EeeccCCCCCCCCCCEEECCCCC-EEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCCcc
Confidence 76422 2111 123467899999987 5555 22 13456666665 554444444456788
Q ss_pred EEEecCCCEEEEEEcCCeEEEEECC-CceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEE
Q 004207 688 MRFQPRLGRILAAAIENYISILDVE-TQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKI 766 (768)
Q Consensus 688 l~fsp~~~~llags~Dg~I~IwD~~-t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~I 766 (768)
++|+|++..+++.+.++.|.+||+. ++.... ..+++ ..+...+.+++++++|.++++. ++.|.+
T Consensus 177 i~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~---~~~~~----------~~~~~~p~~i~~d~~G~l~v~~--~~~v~~ 241 (296)
T 3e5z_A 177 LAFLPSGNLLVSDTGDNATHRYCLNARGETEY---QGVHF----------TVEPGKTDGLRVDAGGLIWASA--GDGVHV 241 (296)
T ss_dssp EEECTTSCEEEEETTTTEEEEEEECSSSCEEE---EEEEE----------CCSSSCCCSEEEBTTSCEEEEE--TTEEEE
T ss_pred EEECCCCCEEEEeCCCCeEEEEEECCCCcCcC---CCeEe----------eCCCCCCCeEEECCCCCEEEEc--CCeEEE
Confidence 9999999988555667899999986 332200 01111 1244567789999999866665 788888
Q ss_pred eC
Q 004207 767 WK 768 (768)
Q Consensus 767 WD 768 (768)
||
T Consensus 242 ~~ 243 (296)
T 3e5z_A 242 LT 243 (296)
T ss_dssp EC
T ss_pred EC
Confidence 86
No 182
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.37 E-value=4.1e-11 Score=142.48 Aligned_cols=194 Identities=6% Similarity=-0.033 Sum_probs=133.0
Q ss_pred eEEEEEcCCCCEEEEEeCCCc----------------EEEEECCCCe----EEEEeccCCCCEEEEEEcCCCCEEEEEeC
Q 004207 558 VESCHFSPDGKLLATGGHDKK----------------AVLWCTESFT----VKSTLEEHTQWITDVRFSPSLSRLATSSA 617 (768)
Q Consensus 558 I~sl~fSpdg~~LaSgs~Dg~----------------I~VWdl~t~~----~~~tl~~h~~~V~sl~fspdg~~LaTgs~ 617 (768)
+.+++|+|||+.|+.++.++. |++|++.++. .+.....|...+..+.|+||+++|+.++.
T Consensus 173 ~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~ 252 (710)
T 2xdw_A 173 FSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIR 252 (710)
T ss_dssp SCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEE
T ss_pred cceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEE
Confidence 678999999999999888766 9999998765 22232335566889999999999888765
Q ss_pred -----CCcEEEEECCC------CCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCC---CcEEEEECCCCee---EEEEe
Q 004207 618 -----DRTVRVWDTEN------PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN---SEIRYWSINNGSC---AGVFK 680 (768)
Q Consensus 618 -----DgtIrVWDl~t------~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~D---g~I~iWDl~sg~~---i~~~~ 680 (768)
+..|++||+.+ +......+..+...+.. .|+++|+.+++.+..+ +.|.+||+.++.. ...+.
T Consensus 253 ~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~ 331 (710)
T 2xdw_A 253 EGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVP 331 (710)
T ss_dssp CSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEEC
T ss_pred ccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccC
Confidence 56899999986 43235566666666655 4888888887776543 3799999987642 23333
Q ss_pred cCC--CeeEEEEecCCCEEEEEEcCCe--EEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEE
Q 004207 681 CQS--GATQMRFQPRLGRILAAAIENY--ISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVA 756 (768)
Q Consensus 681 ~~~--~i~sl~fsp~~~~llags~Dg~--I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~La 756 (768)
... .+..++|++++..+++...++. |.+||+.++... ..+..+.+.|..++++|++..|+
T Consensus 332 ~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~----------------~~l~~~~~~v~~~~~s~d~~~l~ 395 (710)
T 2xdw_A 332 EHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALL----------------KIFPLEVGSVVGYSGQKKDTEIF 395 (710)
T ss_dssp CCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEE----------------EEECCCSSEEEEEECCTTCSEEE
T ss_pred CCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEE----------------EecCCCCceEEEEecCCCCCEEE
Confidence 322 4777889876566666667774 445555443321 22334566788899999887555
Q ss_pred EE-E---CCCcEEEeC
Q 004207 757 SA-S---HDKCVKIWK 768 (768)
Q Consensus 757 Sg-s---~DG~V~IWD 768 (768)
.. + ..+.|++||
T Consensus 396 ~~~ss~~~P~~i~~~d 411 (710)
T 2xdw_A 396 YQFTSFLSPGIIYHCD 411 (710)
T ss_dssp EEEECSSCCCEEEEEE
T ss_pred EEEeCCCCCCEEEEEE
Confidence 33 2 246777775
No 183
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.37 E-value=2.3e-11 Score=144.57 Aligned_cols=198 Identities=11% Similarity=0.012 Sum_probs=138.0
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCc--------
Q 004207 554 STSKVESCHFSPDGKLLATGGHDK-----KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT-------- 620 (768)
Q Consensus 554 H~~~I~sl~fSpdg~~LaSgs~Dg-----~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~Dgt-------- 620 (768)
|...+.+++|||||++||.+..++ .|+|||+.+++.+.....+ ..+.+++|+||++.|+.++.++.
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~ 201 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTE 201 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSC
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCccccccccc
Confidence 444688999999999998775543 8999999999877543322 23678999999999999988876
Q ss_pred --------EEEEECCCCCee-EEEee--cCCCCeEEEEEeCCCCeEEEEEeC----CCcEEEEECCC------Ce-eEEE
Q 004207 621 --------VRVWDTENPDYS-LRTFT--GHSTTVMSLDFHPSKEDLLCSCDN----NSEIRYWSINN------GS-CAGV 678 (768)
Q Consensus 621 --------IrVWDl~t~~~~-~~~~~--~h~~~V~slafsp~g~~lLaSgs~----Dg~I~iWDl~s------g~-~i~~ 678 (768)
|++|++.++... ...+. .|...+.++.|+|+|+.++++... +..|++||+.+ +. ....
T Consensus 202 ~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 281 (710)
T 2xdw_A 202 TSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVK 281 (710)
T ss_dssp CCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEE
T ss_pred cccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEE
Confidence 999999876531 22222 345668899999999987766542 56899999986 42 2344
Q ss_pred Eec-CCCeeEEEEecCCCEEEEEEcCC----eEEEEECCCceEeeecceeEEeecCCCceEEeccCCC--CeeEEEEeCC
Q 004207 679 FKC-QSGATQMRFQPRLGRILAAAIEN----YISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDK--LVSSLAASTV 751 (768)
Q Consensus 679 ~~~-~~~i~sl~fsp~~~~llags~Dg----~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~--~I~sla~spd 751 (768)
+.. ...+. ..|++++..|+..+..+ .|.+||+.+.... ....+..|.. .|..++|+++
T Consensus 282 l~~~~~~~~-~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~--------------~~~~l~~~~~~~~~~~~~~~~~ 346 (710)
T 2xdw_A 282 LIDNFEGEY-DYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEES--------------KWKVLVPEHEKDVLEWVACVRS 346 (710)
T ss_dssp EECSSSSCE-EEEEEETTEEEEEECTTCTTCEEEEEETTSCCGG--------------GCEEEECCCSSCEEEEEEEETT
T ss_pred eeCCCCcEE-EEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcc--------------cceeccCCCCCCeEEEEEEEcC
Confidence 443 33333 35889999888777543 4777777653210 0112233433 5788999877
Q ss_pred CCEEEEEECCCcEEEe
Q 004207 752 NGMVASASHDKCVKIW 767 (768)
Q Consensus 752 g~~LaSgs~DG~V~IW 767 (768)
+.++++...|+..+||
T Consensus 347 ~~lv~~~~~~g~~~l~ 362 (710)
T 2xdw_A 347 NFLVLCYLHDVKNTLQ 362 (710)
T ss_dssp TEEEEEEEETTEEEEE
T ss_pred CEEEEEEEECCEEEEE
Confidence 7888888888866554
No 184
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.37 E-value=4.6e-10 Score=130.25 Aligned_cols=190 Identities=10% Similarity=0.017 Sum_probs=142.4
Q ss_pred CCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004207 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (768)
Q Consensus 506 ~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~ 585 (768)
..++++...+++|.+++.... +.+..+.. ...+.++.|+|||+++++++.|+.|.+||+.
T Consensus 167 ~~~~V~~~~~~~V~viD~~t~-------------------~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~ 226 (567)
T 1qks_A 167 NLFSVTLRDAGQIALIDGSTY-------------------EIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLW 226 (567)
T ss_dssp GEEEEEETTTTEEEEEETTTC-------------------CEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETT
T ss_pred ceEEEEeCCCCeEEEEECCCC-------------------eEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECC
Confidence 356677778888998854322 12222322 2347799999999999999999999999995
Q ss_pred --CCeEEEEeccCCCCEEEEEEc----CCCCEEEEEeC-CCcEEEEECCCCCeeEEEeec----------C-CCCeEEEE
Q 004207 586 --SFTVKSTLEEHTQWITDVRFS----PSLSRLATSSA-DRTVRVWDTENPDYSLRTFTG----------H-STTVMSLD 647 (768)
Q Consensus 586 --t~~~~~tl~~h~~~V~sl~fs----pdg~~LaTgs~-DgtIrVWDl~t~~~~~~~~~~----------h-~~~V~sla 647 (768)
+++.+.++.... ....++|+ |||+++++++. +++|.|+|..+.+. +..+.. | ...+..+.
T Consensus 227 ~~t~~~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~-~~~i~~~~~~~~~~~~~p~~rva~i~ 304 (567)
T 1qks_A 227 MKEPTTVAEIKIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEP-KKIQSTRGMTYDEQEYHPEPRVAAIL 304 (567)
T ss_dssp SSSCCEEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCE-EEEEECCEECTTTCCEESCCCEEEEE
T ss_pred CCCCcEeEEEecCC-CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcE-EEEEeccccccccccccCCCceEEEE
Confidence 888888886544 46899999 69998887766 58999999988775 333321 2 12678899
Q ss_pred EeCCCCeEEEEEeCCCcEEEEECCCCee--EEEEecCCCeeEEEEecCCCEEEEEE-cCCeEEEEECCCceEe
Q 004207 648 FHPSKEDLLCSCDNNSEIRYWSINNGSC--AGVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVETQVCR 717 (768)
Q Consensus 648 fsp~g~~lLaSgs~Dg~I~iWDl~sg~~--i~~~~~~~~i~sl~fsp~~~~llags-~Dg~I~IwD~~t~~~~ 717 (768)
+++++..++++...+|.|.++|..+.+. +..+........+.|+|++.++++++ .++.|.++|+.+++..
T Consensus 305 ~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~ 377 (567)
T 1qks_A 305 ASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLV 377 (567)
T ss_dssp ECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEE
T ss_pred EcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEE
Confidence 9998888888888889999999987543 33344455677899999999988877 5789999999887543
No 185
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.36 E-value=1.5e-10 Score=121.74 Aligned_cols=194 Identities=12% Similarity=0.098 Sum_probs=132.0
Q ss_pred CCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCeEEEE-ecc----CCCCEEEEEEcCCCCEEEEEeCC---------
Q 004207 554 STSKVESCHFSPD-GKLLATGGHDKKAVLWCTESFTVKST-LEE----HTQWITDVRFSPSLSRLATSSAD--------- 618 (768)
Q Consensus 554 H~~~I~sl~fSpd-g~~LaSgs~Dg~I~VWdl~t~~~~~t-l~~----h~~~V~sl~fspdg~~LaTgs~D--------- 618 (768)
+...+.+++++++ ++++++. .+..|.+||.+ ++.... ... ....+.+++++++++++++...+
T Consensus 69 ~~~~~~~i~~~~~~g~l~v~~-~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~ 146 (314)
T 1pjx_A 69 YGGIPAGCQCDRDANQLFVAD-MRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTR 146 (314)
T ss_dssp EECCEEEEEECSSSSEEEEEE-TTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCB
T ss_pred CCCCCceEEEecCCCcEEEEE-CCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccc
Confidence 4466899999999 6655544 44579999988 665433 221 12358899999999888777655
Q ss_pred ------CcEEEEECCCCCeeEEEeecCCCCeEEEEEe----CCCCeEEEEEeCCCcEEEEECC-CCee-----EEEEecC
Q 004207 619 ------RTVRVWDTENPDYSLRTFTGHSTTVMSLDFH----PSKEDLLCSCDNNSEIRYWSIN-NGSC-----AGVFKCQ 682 (768)
Q Consensus 619 ------gtIrVWDl~t~~~~~~~~~~h~~~V~slafs----p~g~~lLaSgs~Dg~I~iWDl~-sg~~-----i~~~~~~ 682 (768)
+.|..||.+ ++. ..+..+......++|+ ++++.++++...++.|.+||+. ++.. ...+...
T Consensus 147 ~~~~~~~~l~~~~~~-g~~--~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~ 223 (314)
T 1pjx_A 147 SMQEKFGSIYCFTTD-GQM--IQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGT 223 (314)
T ss_dssp TTSSSCEEEEEECTT-SCE--EEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCC
T ss_pred cccCCCCeEEEECCC-CCE--EEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCC
Confidence 567777765 432 2233334557889999 9987777777778899999986 4542 1222222
Q ss_pred --CCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEE-
Q 004207 683 --SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS- 759 (768)
Q Consensus 683 --~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs- 759 (768)
..+..+++++++..+++...++.|.+||..++.... .+..+...+.+++|++++++|++++
T Consensus 224 ~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~----------------~~~~~~~~~~~i~~~~dg~~l~v~~~ 287 (314)
T 1pjx_A 224 HEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKM----------------RIRCPFEKPSNLHFKPQTKTIFVTEH 287 (314)
T ss_dssp SSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSE----------------EEECSSSCEEEEEECTTSSEEEEEET
T ss_pred CCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeE----------------EEeCCCCCceeEEECCCCCEEEEEeC
Confidence 457789999998777777778899999987543321 1123446789999999999555554
Q ss_pred CCCcEEEeC
Q 004207 760 HDKCVKIWK 768 (768)
Q Consensus 760 ~DG~V~IWD 768 (768)
.++.|.+|+
T Consensus 288 ~~~~l~~~~ 296 (314)
T 1pjx_A 288 ENNAVWKFE 296 (314)
T ss_dssp TTTEEEEEE
T ss_pred CCCeEEEEe
Confidence 567777764
No 186
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.36 E-value=1.5e-10 Score=126.45 Aligned_cols=219 Identities=11% Similarity=0.039 Sum_probs=141.2
Q ss_pred CccccCCCCEEEeec----------CCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecC---CCCCeEEEEEcC
Q 004207 499 PNQLTDMDRFVDDGS----------LDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA---STSKVESCHFSP 565 (768)
Q Consensus 499 ~~~l~~~~~~latGS----------~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~---H~~~I~sl~fSp 565 (768)
...+++.++++++++ .++.|.+|+... ......+..... +......++|+|
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t----------------~~~~~~i~~~~~~~~~g~~p~~i~~sp 117 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADK----------------LTFEKEISLPPKRVQGLNYDGLFRQTT 117 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTT----------------CCEEEEEEECTTBCCBCCCGGGEEECT
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcC----------------CcEEEEEEcCccccccCCCcceEEECC
Confidence 456677777777765 256677774321 111222222111 224567899999
Q ss_pred CCCEEEEEeC--CCcEEEEECCCCeEEEE-eccCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCC-CCee--------
Q 004207 566 DGKLLATGGH--DKKAVLWCTESFTVKST-LEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTEN-PDYS-------- 632 (768)
Q Consensus 566 dg~~LaSgs~--Dg~I~VWdl~t~~~~~t-l~~h~~~V~sl~fspdg-~~LaTgs~DgtIrVWDl~t-~~~~-------- 632 (768)
||++|+++.. ++.|.|||+.+++.+.+ +... . ...+.+.|++ ..+++.+.||.+.+|+++. ++..
T Consensus 118 dg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~-~-~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~ 195 (361)
T 2oiz_A 118 DGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA-G-CWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQM 195 (361)
T ss_dssp TSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT-T-EEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCC
T ss_pred CCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC-C-cceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccce
Confidence 9999998864 57999999999998887 5432 1 2223444543 3445555555555555432 1110
Q ss_pred ---------------------------------------E-EEeec------C----CCCeEEEEEeCCCCeEEEEEe--
Q 004207 633 ---------------------------------------L-RTFTG------H----STTVMSLDFHPSKEDLLCSCD-- 660 (768)
Q Consensus 633 ---------------------------------------~-~~~~~------h----~~~V~slafsp~g~~lLaSgs-- 660 (768)
+ ..+.- + ......++|+|+++.+++++.
T Consensus 196 ~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~ 275 (361)
T 2oiz_A 196 FSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPD 275 (361)
T ss_dssp SCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESS
T ss_pred EcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccC
Confidence 0 00000 0 000112688999888887665
Q ss_pred --------CCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCc--eEeeecceeEEeecCC
Q 004207 661 --------NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQ--VCRLKLQTLELWNMTE 730 (768)
Q Consensus 661 --------~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~--~~~~~~~~I~iwd~~~ 730 (768)
..+.|.+||+.+++.+..+..+. +..++|+|++.+++++.. +.|.+||..++ +.+..
T Consensus 276 ~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~----------- 342 (361)
T 2oiz_A 276 GKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRT----------- 342 (361)
T ss_dssp CCTTCTTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEE-----------
T ss_pred CCcccccCCCceEEEEECCCCcEEEEEecCC-eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEE-----------
Confidence 13489999999999999999877 999999999998887776 99999998887 55432
Q ss_pred CceEEeccCCCCeeEEEEeCCCC
Q 004207 731 NKTLTLSAHDKLVSSLAASTVNG 753 (768)
Q Consensus 731 ~~~~~l~~H~~~I~sla~spdg~ 753 (768)
+..+......++++|+|+
T Consensus 343 -----i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 343 -----IEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp -----ETTSCSSEEEEEECCCSC
T ss_pred -----eccCCCCcEEEEecCCCC
Confidence 234556678899999885
No 187
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.36 E-value=1.1e-10 Score=125.70 Aligned_cols=222 Identities=11% Similarity=0.017 Sum_probs=151.6
Q ss_pred CCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004207 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (768)
Q Consensus 506 ~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~ 585 (768)
+.+.++...++.|.+|+.... +.+..+. .......++++++++++++...++.|.+||..
T Consensus 54 ~~lyv~~~~~~~v~viD~~t~-------------------~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~ 113 (328)
T 3dsm_A 54 GIGWIVVNNSHVIFAIDINTF-------------------KEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPK 113 (328)
T ss_dssp TEEEEEEGGGTEEEEEETTTC-------------------CEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETT
T ss_pred CEEEEEEcCCCEEEEEECccc-------------------EEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECC
Confidence 344455555677888744322 1222232 23568899999998555555489999999999
Q ss_pred CCeEEEEeccCC-----CCEEEEEEcCCCCEEEEEe--CCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEE
Q 004207 586 SFTVKSTLEEHT-----QWITDVRFSPSLSRLATSS--ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS 658 (768)
Q Consensus 586 t~~~~~tl~~h~-----~~V~sl~fspdg~~LaTgs--~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaS 658 (768)
+++....+.... .....+++ ++..|+++. .+++|.+||+.+++. +..+.. ......++++++|+ ++++
T Consensus 114 t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~-~~~i~~-g~~p~~i~~~~dG~-l~v~ 188 (328)
T 3dsm_A 114 TYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKV-VDELTI-GIQPTSLVMDKYNK-MWTI 188 (328)
T ss_dssp TTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEE-EEEEEC-SSCBCCCEECTTSE-EEEE
T ss_pred CCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeE-EEEEEc-CCCccceEEcCCCC-EEEE
Confidence 999887775433 14567777 345555555 488999999998765 444443 33467899999976 5555
Q ss_pred EeCC----------CcEEEEECCCCeeEEEEec--CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEe
Q 004207 659 CDNN----------SEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELW 726 (768)
Q Consensus 659 gs~D----------g~I~iWDl~sg~~i~~~~~--~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iw 726 (768)
+..+ +.|.+||..+++.+..+.. ......++|+|+++.++++.. .|.+||..+++.... .
T Consensus 189 ~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~-~----- 260 (328)
T 3dsm_A 189 TDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVR-P----- 260 (328)
T ss_dssp BCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSS-C-----
T ss_pred ECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeee-e-----
Confidence 5544 7899999999998877765 346889999999998887654 888899877643210 0
Q ss_pred ecCCCceEEeccCCCCeeEEEEeCC-CCEEEEE----ECCCcEEEeC
Q 004207 727 NMTENKTLTLSAHDKLVSSLAASTV-NGMVASA----SHDKCVKIWK 768 (768)
Q Consensus 727 d~~~~~~~~l~~H~~~I~sla~spd-g~~LaSg----s~DG~V~IWD 768 (768)
.+..+...+..++++|+ +.++++. ..++.|.+||
T Consensus 261 --------~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d 299 (328)
T 3dsm_A 261 --------FLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYS 299 (328)
T ss_dssp --------SBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEEC
T ss_pred --------eecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEEC
Confidence 01112356889999995 4555555 5688999986
No 188
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.34 E-value=1.6e-09 Score=112.53 Aligned_cols=195 Identities=11% Similarity=0.037 Sum_probs=138.2
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEE-EEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCee
Q 004207 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK-STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS 632 (768)
Q Consensus 554 H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~-~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~ 632 (768)
+...+.+++++++|.++++...++.|.+||.. ++.. ..+......+.++++++++.++++...++.|.+||. ++...
T Consensus 55 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~ 132 (299)
T 2z2n_A 55 PDAKVMCLTISSDGEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIR 132 (299)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEE
T ss_pred ccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEE
Confidence 45679999999999988887778899999986 3332 222234557899999999988888777889999998 55543
Q ss_pred EEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEE-Ee-cCCCeeEEEEecCCCEEEEEEcCCeEEEEE
Q 004207 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV-FK-CQSGATQMRFQPRLGRILAAAIENYISILD 710 (768)
Q Consensus 633 ~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~-~~-~~~~i~sl~fsp~~~~llags~Dg~I~IwD 710 (768)
......+...+.++++++++. ++++...++.|.+||. +++.... +. ....+..+++++++..+++...++.|.+||
T Consensus 133 ~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~ 210 (299)
T 2z2n_A 133 EYELPNKGSYPSFITLGSDNA-LWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRIT 210 (299)
T ss_dssp EEECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEEC
T ss_pred EecCCCCCCCCceEEEcCCCC-EEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEEC
Confidence 333333456789999999975 6656666789999999 6665442 11 234578899999877555544578899998
Q ss_pred CCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 711 VETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 711 ~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
. ++... .+ ....+...+.++++++++.++++...++.|.+||
T Consensus 211 ~-~g~~~-------~~--------~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d 252 (299)
T 2z2n_A 211 T-SGEIT-------EF--------KIPTPNARPHAITAGAGIDLWFTEWGANKIGRLT 252 (299)
T ss_dssp T-TCCEE-------EE--------ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEE
T ss_pred C-CCcEE-------EE--------ECCCCCCCceeEEECCCCCEEEeccCCceEEEEC
Confidence 8 44321 11 1123456688999999988666665677787774
No 189
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.32 E-value=5.3e-11 Score=131.38 Aligned_cols=178 Identities=13% Similarity=0.100 Sum_probs=134.7
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-----------EEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004207 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFT-----------VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (768)
Q Consensus 557 ~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~-----------~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWD 625 (768)
.+..+++++...+|++|+.++ ++||+++..+ ..... .+.. |+.|+| ++.+|+++ .++.|++||
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 589999999999999999985 6669865433 11222 3556 999999 88999998 889999999
Q ss_pred CCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCe
Q 004207 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENY 705 (768)
Q Consensus 626 l~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~ 705 (768)
+.+... ......|...|.++.+.+. . +++++.||.|.+||+.++.... ....|++++|+|+| ++++..||.
T Consensus 113 v~sl~~-~~~~~~~~~~v~~i~~~~p--~-~av~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSpkG--~~vg~~dg~ 183 (388)
T 1xip_A 113 LEELSE-FRTVTSFEKPVFQLKNVNN--T-LVILNSVNDLSALDLRTKSTKQ---LAQNVTSFDVTNSQ--LAVLLKDRS 183 (388)
T ss_dssp SSSTTC-EEEEEECSSCEEEEEECSS--E-EEEEETTSEEEEEETTTCCEEE---EEESEEEEEECSSE--EEEEETTSC
T ss_pred chhhhc-cCccceeecceeeEEecCC--C-EEEEECCCCEEEEEccCCcccc---ccCCceEEEEcCCc--eEEEEcCCc
Confidence 987664 4556667788988887754 2 6678889999999999887654 33689999999998 788999999
Q ss_pred EEEEECCCceE--eeecceeEEeecCCCceEEec---cCCCCeeEEEEeCCCCEEEEEE
Q 004207 706 ISILDVETQVC--RLKLQTLELWNMTENKTLTLS---AHDKLVSSLAASTVNGMVASAS 759 (768)
Q Consensus 706 I~IwD~~t~~~--~~~~~~I~iwd~~~~~~~~l~---~H~~~I~sla~spdg~~LaSgs 759 (768)
|++|+.....+ ...+. ... .+. +|...|.+|.|.+++.+|++=+
T Consensus 184 i~~~~~~~~~~~~k~~I~--------~Pp--~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 184 FQSFAWRNGEMEKQFEFS--------LPS--ELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp EEEEEEETTEEEEEEEEC--------CCH--HHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred EEEEcCCCccccccceec--------CCc--ccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 99998877654 21110 000 011 4678899999999888887643
No 190
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.31 E-value=3.2e-11 Score=143.10 Aligned_cols=196 Identities=10% Similarity=0.013 Sum_probs=134.3
Q ss_pred CCCCCeEEEEEcCCCCEEEE-----EeCCCcEEEEECCCCeEEEEeccCCCCE--EEEEEcCCCCEEEEEeCCCc-----
Q 004207 553 ASTSKVESCHFSPDGKLLAT-----GGHDKKAVLWCTESFTVKSTLEEHTQWI--TDVRFSPSLSRLATSSADRT----- 620 (768)
Q Consensus 553 ~H~~~I~sl~fSpdg~~LaS-----gs~Dg~I~VWdl~t~~~~~tl~~h~~~V--~sl~fspdg~~LaTgs~Dgt----- 620 (768)
+|...+.+++|||||++||. |+.+..|++||+.+++.+. ..+...+ ..++|+||++.|+.++.|..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~ 195 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKV 195 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCG
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCcc
Confidence 45556899999999999883 3445689999999988641 1121222 68999999999999998876
Q ss_pred --------EEEEECCCCCe---eEEEeecCCCCeEEEEEeCCCCeEEEEEeCC-C--cEEEEECCCCeeEEEEecCCCee
Q 004207 621 --------VRVWDTENPDY---SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-S--EIRYWSINNGSCAGVFKCQSGAT 686 (768)
Q Consensus 621 --------IrVWDl~t~~~---~~~~~~~h~~~V~slafsp~g~~lLaSgs~D-g--~I~iWDl~sg~~i~~~~~~~~i~ 686 (768)
|++|++.++.. .+.....|...+.++.|+|+|+.++++...+ + .|++||..++...........+.
T Consensus 196 ~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ 275 (695)
T 2bkl_A 196 DERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKY 275 (695)
T ss_dssp GGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCE
T ss_pred ccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceE
Confidence 99999987652 2233334556789999999999877666543 2 67777776665555555555566
Q ss_pred EEEEecCCCEEEEEEc----CCeEEEEECCCceEeeecceeEEeecCCCceEEeccC--CCCeeEEEEeCCCCEEEEEEC
Q 004207 687 QMRFQPRLGRILAAAI----ENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAH--DKLVSSLAASTVNGMVASASH 760 (768)
Q Consensus 687 sl~fsp~~~~llags~----Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H--~~~I~sla~spdg~~LaSgs~ 760 (768)
...+ +++. +++.+. ++.|.+||+.+.... ....+..| ...|..++|+ ++.++++...
T Consensus 276 ~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~--------------~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~ 338 (695)
T 2bkl_A 276 EVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARA--------------SWKEIVPEDSSASLLSVSIV-GGHLSLEYLK 338 (695)
T ss_dssp EEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGG--------------GCEEEECCCSSCEEEEEEEE-TTEEEEEEEE
T ss_pred EEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCcc--------------CCeEEecCCCCCeEEEEEEE-CCEEEEEEEE
Confidence 6666 5566 555554 466777777553210 00122222 4457888888 6678888899
Q ss_pred CCcEEEe
Q 004207 761 DKCVKIW 767 (768)
Q Consensus 761 DG~V~IW 767 (768)
|+..+||
T Consensus 339 dg~~~l~ 345 (695)
T 2bkl_A 339 DATSEVR 345 (695)
T ss_dssp TTEEEEE
T ss_pred CCEEEEE
Confidence 9998887
No 191
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.31 E-value=1.3e-10 Score=124.17 Aligned_cols=178 Identities=10% Similarity=0.100 Sum_probs=121.3
Q ss_pred eEEEEEcCCCCEEEEEeCC---------------------------CcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCC
Q 004207 558 VESCHFSPDGKLLATGGHD---------------------------KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS 610 (768)
Q Consensus 558 I~sl~fSpdg~~LaSgs~D---------------------------g~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~ 610 (768)
+.+++|+|||+.|+.++.+ ..|++||+.+++.+..+.. . .+..++|+|++
T Consensus 106 ~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg- 182 (347)
T 2gop_A 106 IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK- 182 (347)
T ss_dssp EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-
T ss_pred ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-
Confidence 9999999999988887642 5699999998887445544 3 78899999999
Q ss_pred EEEEEeCCC-------cEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCC-------CcEEEEECCCCeeE
Q 004207 611 RLATSSADR-------TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-------SEIRYWSINNGSCA 676 (768)
Q Consensus 611 ~LaTgs~Dg-------tIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~D-------g~I~iWDl~sg~~i 676 (768)
+++++..++ ...||.+++++ ...+..+ ..+.++ +|+|+.+++++..+ ..|.+|| +++..
T Consensus 183 ~~~~~~~~~~~~~~~~~~~l~~~d~~~--~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~ 255 (347)
T 2gop_A 183 IVVNVPHREIIPQYFKFWDIYIWEDGK--EEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVM 255 (347)
T ss_dssp EEEEEECCCSSCCSSCCEEEEEEETTE--EEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEE
T ss_pred EEEEEecccccccccccccEEEeCCCc--eEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceE
Confidence 888876652 44555554333 3334434 455544 99998777665432 4688888 55544
Q ss_pred EEEec-CCCeeE-EEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCE
Q 004207 677 GVFKC-QSGATQ-MRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGM 754 (768)
Q Consensus 677 ~~~~~-~~~i~s-l~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~ 754 (768)
..+.. ...+.. +.|+ ++ .+++++.++.+.|| +.++. ...+..+...|.+++|++ .+
T Consensus 256 ~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~-----------------~~~~~~~~~~v~~~~~s~--~~ 313 (347)
T 2gop_A 256 GILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGE-----------------IKPIAKGRHWIMGFDVDE--IV 313 (347)
T ss_dssp ESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSS-----------------EEEEECSSSEEEEEEESS--SE
T ss_pred eccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCc-----------------eEEEecCCCeEEeeeeeC--cE
Confidence 33333 344665 8898 77 77888889988888 65322 122234567789999999 67
Q ss_pred EEEEECCCcE-EEe
Q 004207 755 VASASHDKCV-KIW 767 (768)
Q Consensus 755 LaSgs~DG~V-~IW 767 (768)
+++++.++.. .||
T Consensus 314 ~~~~~~~~~~~~l~ 327 (347)
T 2gop_A 314 VYLKETATRLRELF 327 (347)
T ss_dssp EEEEECSSSCCEEE
T ss_pred EEEEcCCCChHHhe
Confidence 7787777654 555
No 192
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.29 E-value=3.2e-09 Score=123.18 Aligned_cols=252 Identities=10% Similarity=0.063 Sum_probs=171.2
Q ss_pred CccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEc----CCCCEEEEEe
Q 004207 499 PNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFS----PDGKLLATGG 574 (768)
Q Consensus 499 ~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fS----pdg~~LaSgs 574 (768)
...+++.++++.+++.|+.|.+|+.... +.+.+..+.... ....++|+ |||+++++++
T Consensus 201 ~v~~SpDGr~lyv~~~dg~V~viD~~~~-----------------t~~~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n 262 (567)
T 1qks_A 201 ISRLSASGRYLFVIGRDGKVNMIDLWMK-----------------EPTTVAEIKIGS-EARSIETSKMEGWEDKYAIAGA 262 (567)
T ss_dssp EEEECTTSCEEEEEETTSEEEEEETTSS-----------------SCCEEEEEECCS-EEEEEEECCSTTCTTTEEEEEE
T ss_pred ceEECCCCCEEEEEcCCCeEEEEECCCC-----------------CCcEeEEEecCC-CCceeEEccccCCCCCEEEEEE
Confidence 4566778889988899999999964211 011223333322 25689999 6999887765
Q ss_pred C-CCcEEEEECCCCeEEEEeccC-----------CCCEEEEEEcCCCCE-EEEEeCCCcEEEEECCCCCeeEEEeecCCC
Q 004207 575 H-DKKAVLWCTESFTVKSTLEEH-----------TQWITDVRFSPSLSR-LATSSADRTVRVWDTENPDYSLRTFTGHST 641 (768)
Q Consensus 575 ~-Dg~I~VWdl~t~~~~~tl~~h-----------~~~V~sl~fspdg~~-LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~ 641 (768)
. ++.|.|+|..+.+++.++... ...+..+.+++++.. +++...+|.|.++|..+.+...........
T Consensus 263 ~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~ 342 (567)
T 1qks_A 263 YWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAER 342 (567)
T ss_dssp EETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCS
T ss_pred ccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccc
Confidence 4 589999999999988776421 126788999987554 455566799999999876532322233445
Q ss_pred CeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCe---eEEE-EecCCCEEEEEE--cCCeEEEEECCC-
Q 004207 642 TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGA---TQMR-FQPRLGRILAAA--IENYISILDVET- 713 (768)
Q Consensus 642 ~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i---~sl~-fsp~~~~llags--~Dg~I~IwD~~t- 713 (768)
...++.|+|+++++++++..++.|.++|+.+++.+..+.. .... .... ++|+++.+++.+ .++.|.++|..+
T Consensus 343 ~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~ 422 (567)
T 1qks_A 343 FLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPE 422 (567)
T ss_dssp SEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTT
T ss_pred cccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCCC
Confidence 6788999999999998888889999999999998887765 2211 1223 588867766655 468999999876
Q ss_pred ------ceEeeecc--------------------------------eeEEeecCCC-----c-e-EEec--------cCC
Q 004207 714 ------QVCRLKLQ--------------------------------TLELWNMTEN-----K-T-LTLS--------AHD 740 (768)
Q Consensus 714 ------~~~~~~~~--------------------------------~I~iwd~~~~-----~-~-~~l~--------~H~ 740 (768)
.+.+..+. .|.++|+.+. . . ..+. ...
T Consensus 423 ~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 502 (567)
T 1qks_A 423 GHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQ 502 (567)
T ss_dssp TCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSC
T ss_pred CCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCC
Confidence 22222211 4566666544 1 1 1111 113
Q ss_pred CCeeEEEEeCCCCEEEEEE-----CCCcEEEeC
Q 004207 741 KLVSSLAASTVNGMVASAS-----HDKCVKIWK 768 (768)
Q Consensus 741 ~~I~sla~spdg~~LaSgs-----~DG~V~IWD 768 (768)
..+..+.|+++|++|+.+. .++.|.|+|
T Consensus 503 ~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D 535 (567)
T 1qks_A 503 PRVVQGEFNKDGTEVWFSVWNGKDQESALVVVD 535 (567)
T ss_dssp CEEEEEEECTTSSEEEEEEECCTTSCCEEEEEE
T ss_pred cceEeeeECCCCCEEEEEeecCCCCCCcEEEEE
Confidence 4678999999999877763 368888875
No 193
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.29 E-value=6.4e-11 Score=140.52 Aligned_cols=229 Identities=7% Similarity=-0.089 Sum_probs=145.5
Q ss_pred cccCCCCEEE-----eecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeC
Q 004207 501 QLTDMDRFVD-----DGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH 575 (768)
Q Consensus 501 ~l~~~~~~la-----tGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~ 575 (768)
.+.+.+++|+ .|+.+..|++|+...+... . .. .+... ...+++|+|||+.|+.++.
T Consensus 127 ~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~-----~-----~~-------~~~~~--~~~~~~wspDg~~l~~~~~ 187 (695)
T 2bkl_A 127 AVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWS-----K-----VD-------VIEGG--KYATPKWTPDSKGFYYEWL 187 (695)
T ss_dssp EECTTSSEEEEEEEETTCSCCEEEEEETTTCCBC-----S-----SC-------CBSCC--TTCCCEECTTSSEEEEEEC
T ss_pred EECCCCCEEEEEECCCCCceEEEEEEECCCCCCc-----C-----Cc-------ccCcc--cccceEEecCCCEEEEEEe
Confidence 3445566666 5666678999976543210 0 00 01111 1257899999999999988
Q ss_pred CCc-------------EEEEECCCCe----EEEEeccCCCCEEEEEEcCCCCEEEEEeCCC----cEEEEECCCCCeeEE
Q 004207 576 DKK-------------AVLWCTESFT----VKSTLEEHTQWITDVRFSPSLSRLATSSADR----TVRVWDTENPDYSLR 634 (768)
Q Consensus 576 Dg~-------------I~VWdl~t~~----~~~tl~~h~~~V~sl~fspdg~~LaTgs~Dg----tIrVWDl~t~~~~~~ 634 (768)
|.. |++|++.++. ++.....|...+.++.|+|||++|+.++.++ .|++||..++. ..
T Consensus 188 d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~--~~ 265 (695)
T 2bkl_A 188 PTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD--FR 265 (695)
T ss_dssp CCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS--CE
T ss_pred cCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc--eE
Confidence 776 9999998765 3333344556789999999999998887766 67777665443 44
Q ss_pred EeecCCCCeEEEEEeCCCCeEEEEEe---CCCcEEEEECCCCee---EEEEec--CCCeeEEEEecCCCEEEEEEcCCeE
Q 004207 635 TFTGHSTTVMSLDFHPSKEDLLCSCD---NNSEIRYWSINNGSC---AGVFKC--QSGATQMRFQPRLGRILAAAIENYI 706 (768)
Q Consensus 635 ~~~~h~~~V~slafsp~g~~lLaSgs---~Dg~I~iWDl~sg~~---i~~~~~--~~~i~sl~fsp~~~~llags~Dg~I 706 (768)
.+..+...+....| +++. +++++. .++.|.+||+.++.. ...+.. ...+..++|+ ++..+++...|+..
T Consensus 266 ~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~ 342 (695)
T 2bkl_A 266 LLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATS 342 (695)
T ss_dssp EEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEE
T ss_pred EeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEE
Confidence 45556666677767 5666 666655 358899999987653 333333 2346778888 45566677778877
Q ss_pred EEEECCCceEeeecceeEEeecCCCceEEeccC-CCCeeEEEEeCCCCEEEEEE----CCCcEEEeC
Q 004207 707 SILDVETQVCRLKLQTLELWNMTENKTLTLSAH-DKLVSSLAASTVNGMVASAS----HDKCVKIWK 768 (768)
Q Consensus 707 ~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H-~~~I~sla~spdg~~LaSgs----~DG~V~IWD 768 (768)
+||.+.. ..+....+..+ .+.|..++++|++..|+... ..+.|++||
T Consensus 343 ~l~~~~~---------------~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d 394 (695)
T 2bkl_A 343 EVRVATL---------------KGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTS 394 (695)
T ss_dssp EEEEEET---------------TCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEeC---------------CCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEE
Confidence 7665431 11111122222 45677788888887665332 346777775
No 194
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.29 E-value=1.6e-10 Score=121.72 Aligned_cols=180 Identities=10% Similarity=0.040 Sum_probs=136.1
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEeccCC-CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecC-CCCe
Q 004207 566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHT-QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH-STTV 643 (768)
Q Consensus 566 dg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~-~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h-~~~V 643 (768)
.+++|++++.|+.|.+||.++++.+.++..+. ..+.++.++|+|++|+ +.++.|..||. +++. +..+..+ ...+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~-~W~~~~~~~~~~ 79 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRE-LWNIAAPAGCEM 79 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCE-EEEEECCTTCEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCE-EEEEcCCCCccc
Confidence 46789999999999999999999999998765 4689999999999888 45788999999 6664 5556554 3578
Q ss_pred EEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCC-------CeeEEEEecCCCEEEEEEcCCeEEEEECCCceE
Q 004207 644 MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS-------GATQMRFQPRLGRILAAAIENYISILDVETQVC 716 (768)
Q Consensus 644 ~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~-------~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~ 716 (768)
.++.+.++|+.+++.++.++.|..+|. +++.+..+.... ....+++.++++++++...++.|.+||.. ++.
T Consensus 80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~ 157 (276)
T 3no2_A 80 QTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQL 157 (276)
T ss_dssp EEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred cccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCE
Confidence 899999998865544433677888885 688877776322 24456788999999888889999999987 554
Q ss_pred eeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 717 RLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 717 ~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
.. .+.. ...+.++.+.+++++|++++.++.|..||
T Consensus 158 ~w--------~~~~---------~~~~~~~~~~~~g~~~v~~~~~~~v~~~d 192 (276)
T 3no2_A 158 LN--------SVKL---------SGTPFSSAFLDNGDCLVACGDAHCFVQLN 192 (276)
T ss_dssp EE--------EEEC---------SSCCCEEEECTTSCEEEECBTTSEEEEEC
T ss_pred EE--------EEEC---------CCCccceeEcCCCCEEEEeCCCCeEEEEe
Confidence 32 2211 12355677778888888887777777765
No 195
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.27 E-value=2.5e-10 Score=117.39 Aligned_cols=192 Identities=7% Similarity=-0.037 Sum_probs=132.0
Q ss_pred CeEEEEEcCCCCEEE-EEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEE
Q 004207 557 KVESCHFSPDGKLLA-TGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 635 (768)
Q Consensus 557 ~I~sl~fSpdg~~La-Sgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~ 635 (768)
...+++++++|++++ +...++.|.+||..+.........+...+.+|+++++++++++.. ++.|.+||...... ..
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~--~~ 101 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ--TV 101 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCC--EE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceE--ee
Confidence 578999999999777 546788999999766543322233335688999999988666655 88999999876543 22
Q ss_pred ee-cCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEe-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCC
Q 004207 636 FT-GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVET 713 (768)
Q Consensus 636 ~~-~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~-~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t 713 (768)
+. .....+.++++++++. ++++...++.|.+||..+........ ....+..+++++++..+++...++.|.+||..+
T Consensus 102 ~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~ 180 (270)
T 1rwi_B 102 LPFDGLNYPEGLAVDTQGA-VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAES 180 (270)
T ss_dssp CCCCSCSSEEEEEECTTCC-EEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTT
T ss_pred eecCCcCCCcceEECCCCC-EEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCC
Confidence 22 2335789999999876 66676678899999876544332221 123578899999887555555678899999876
Q ss_pred ceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 714 QVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 714 ~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
...... ...+...+.+|++++++.++++...++.|.+||
T Consensus 181 ~~~~~~----------------~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~ 219 (270)
T 1rwi_B 181 NNQVVL----------------PFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLL 219 (270)
T ss_dssp CCEEEC----------------CCSSCCSEEEEEECTTCCEEEEETTTSCEEEEC
T ss_pred CceEee----------------cccCCCCceEEEECCCCCEEEEECCCCcEEEEc
Confidence 432210 112235688999999997777777788898886
No 196
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.26 E-value=2.8e-09 Score=117.22 Aligned_cols=202 Identities=12% Similarity=0.055 Sum_probs=130.3
Q ss_pred EEEEcCCCCEEEEEe----------CCCcEEEEECCCCeEEEEeccC-------CCCEEEEEEcCCCCEEEEEeC--CCc
Q 004207 560 SCHFSPDGKLLATGG----------HDKKAVLWCTESFTVKSTLEEH-------TQWITDVRFSPSLSRLATSSA--DRT 620 (768)
Q Consensus 560 sl~fSpdg~~LaSgs----------~Dg~I~VWdl~t~~~~~tl~~h-------~~~V~sl~fspdg~~LaTgs~--Dgt 620 (768)
.++|+|||++|+++. .++.|.+||..+.+.+.++... ......++|+|||++|+++.. ++.
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~ 149 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA 149 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence 899999999988886 3678999999998888776432 123468999999999999874 478
Q ss_pred EEEEECCCCCeeEEE-eecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEe-----c-CCC-eeEEEEec
Q 004207 621 VRVWDTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-----C-QSG-ATQMRFQP 692 (768)
Q Consensus 621 IrVWDl~t~~~~~~~-~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~-----~-~~~-i~sl~fsp 692 (768)
|.++| .+++. +.. +. ... |+.+.|++...+++.+.||.+.+||. +++.+.... . ... .....+.+
T Consensus 150 v~viD-~t~~~-~~~~i~-~~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~ 222 (373)
T 2mad_H 150 VGLVV-QGGSS-DDQLLS-SPT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQAN 222 (373)
T ss_pred EEEEE-CCCCE-EeEEcC-CCc---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEe
Confidence 99999 88765 444 32 112 35566776666667777888888888 766553221 0 111 11233444
Q ss_pred CCCEEEEEEcCCeEEEEECCCceE-------------------------ee----------------------ecceeEE
Q 004207 693 RLGRILAAAIENYISILDVETQVC-------------------------RL----------------------KLQTLEL 725 (768)
Q Consensus 693 ~~~~llags~Dg~I~IwD~~t~~~-------------------------~~----------------------~~~~I~i 725 (768)
+++.++..+.++.|.++|+.+... .. .-..|.+
T Consensus 223 ~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~V 302 (373)
T 2mad_H 223 KSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTS 302 (373)
T ss_pred cCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEE
Confidence 444444444455555555432100 00 0013555
Q ss_pred eecCCCceEEeccCCCCeeEEEEeCCCC-EEEEEE-CCCcEEEeC
Q 004207 726 WNMTENKTLTLSAHDKLVSSLAASTVNG-MVASAS-HDKCVKIWK 768 (768)
Q Consensus 726 wd~~~~~~~~l~~H~~~I~sla~spdg~-~LaSgs-~DG~V~IWD 768 (768)
+|..+.+.+..........+++|+||++ +++++. .++.|.|||
T Consensus 303 ID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD 347 (373)
T 2mad_H 303 VTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYD 347 (373)
T ss_pred EECCCCEEEEEEECCCCcCeEEECCCCCeEEEEEcCCCCeEEEEE
Confidence 6666666543333344689999999999 787777 589999986
No 197
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.26 E-value=8.3e-09 Score=106.98 Aligned_cols=191 Identities=10% Similarity=0.056 Sum_probs=133.6
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEE-eccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCee
Q 004207 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST-LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS 632 (768)
Q Consensus 554 H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~t-l~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~ 632 (768)
+...+.++++.+++.++++...++.|.+||. +++.... +..+...+.+++++++++++++...++.|.+||. +++..
T Consensus 97 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~ 174 (299)
T 2z2n_A 97 PDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDIT 174 (299)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEE
T ss_pred cCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEE
Confidence 4557899999999998888777889999998 5554432 3334567899999999988877777889999999 55542
Q ss_pred EEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec---CCCeeEEEEecCCCEEEEEEcCCeEEEE
Q 004207 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC---QSGATQMRFQPRLGRILAAAIENYISIL 709 (768)
Q Consensus 633 ~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~---~~~i~sl~fsp~~~~llags~Dg~I~Iw 709 (768)
......+...+.++++++++. ++++...++.|.+||. ++.... +.. ...+..+++++++..+++...++.|.+|
T Consensus 175 ~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~ 251 (299)
T 2z2n_A 175 EFKIPTPASGPVGITKGNDDA-LWFVEIIGNKIGRITT-SGEITE-FKIPTPNARPHAITAGAGIDLWFTEWGANKIGRL 251 (299)
T ss_dssp EEECSSTTCCEEEEEECTTSS-EEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECSTTCEEEEETTTTEEEEE
T ss_pred EeeCCCCCCcceeEEECCCCC-EEEEccCCceEEEECC-CCcEEE-EECCCCCCCceeEEECCCCCEEEeccCCceEEEE
Confidence 222333456788999999876 6656656789999999 666433 322 3568899999997744444467899999
Q ss_pred ECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEE
Q 004207 710 DVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKI 766 (768)
Q Consensus 710 D~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~I 766 (768)
|.. +. +..+. +..+...+.++++ +++.++++.+.++.+++
T Consensus 252 d~~-g~-------~~~~~--------~~~~~~~~~~i~~-~~g~l~v~~~~~~l~~~ 291 (299)
T 2z2n_A 252 TSN-NI-------IEEYP--------IQIKSAEPHGICF-DGETIWFAMECDKIGKL 291 (299)
T ss_dssp ETT-TE-------EEEEE--------CSSSSCCEEEEEE-CSSCEEEEETTTEEEEE
T ss_pred CCC-Cc-------eEEEe--------CCCCCCccceEEe-cCCCEEEEecCCcEEEE
Confidence 983 22 11121 1233456899999 88887766554444443
No 198
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.24 E-value=1.3e-08 Score=105.66 Aligned_cols=195 Identities=8% Similarity=-0.013 Sum_probs=136.9
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE-EeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCe
Q 004207 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY 631 (768)
Q Consensus 553 ~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~-tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~ 631 (768)
.+...+.++++.+++.++++...++.|.+||.. ++... .+......+.++++.++++++++...++.|..||.+ ++.
T Consensus 59 ~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~ 136 (300)
T 2qc5_A 59 TPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTI 136 (300)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCE
T ss_pred CCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCE
Confidence 344678999999999988877778899999987 55432 223234678999999999888887778899999987 554
Q ss_pred eEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec---CCCeeEEEEecCCCEEEEEEcCCeEEE
Q 004207 632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC---QSGATQMRFQPRLGRILAAAIENYISI 708 (768)
Q Consensus 632 ~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~---~~~i~sl~fsp~~~~llags~Dg~I~I 708 (768)
....+......+.++++++++. ++++...++.|..||. +++... +.. ...+..+++++++..+++....+.|.+
T Consensus 137 ~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~ 213 (300)
T 2qc5_A 137 YEYDLPNKGSYPAFITLGSDNA-LWFTENQNNSIGRITN-TGKLEE-YPLPTNAAAPVGITSGNDGALWFVEIMGNKIGR 213 (300)
T ss_dssp EEEECSSTTCCEEEEEECTTSS-EEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECTTSSEEEEETTTTEEEE
T ss_pred EEccCCCCCCCceeEEECCCCC-EEEEecCCCeEEEECC-CCcEEE-eeCCCCCCCcceEEECCCCCEEEEccCCCEEEE
Confidence 3223333456789999999987 6656666788999998 555543 322 345788999998765554445678999
Q ss_pred EECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 709 LDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 709 wD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
||.. +... .+ .+..+...+.++++++++.++++...++.|.+||
T Consensus 214 ~~~~-g~~~-------~~--------~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~ 257 (300)
T 2qc5_A 214 ITTT-GEIS-------EY--------DIPTPNARPHAITAGKNSEIWFTEWGANQIGRIT 257 (300)
T ss_dssp ECTT-CCEE-------EE--------ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEC
T ss_pred EcCC-CcEE-------EE--------ECCCCCCCceEEEECCCCCEEEeccCCCeEEEEC
Confidence 9873 2211 11 1113445688999999988666665667887775
No 199
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.24 E-value=6.2e-10 Score=119.70 Aligned_cols=190 Identities=7% Similarity=-0.034 Sum_probs=136.3
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEe
Q 004207 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 636 (768)
Q Consensus 557 ~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~ 636 (768)
...++.+. +++++++...++.|.+||..+++.+.++.. ......++++++++.+++...++.|.+||+.+++. ...+
T Consensus 45 ~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~-~~~i 121 (328)
T 3dsm_A 45 VAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEI-TGYI 121 (328)
T ss_dssp CEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEE-EEEE
T ss_pred cceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeE-EEEE
Confidence 35667774 455566666689999999999999888853 46689999998885444444899999999998764 3333
Q ss_pred ecCC-----CCeEEEEEeCCCCeEEEEEe-CCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcC-------
Q 004207 637 TGHS-----TTVMSLDFHPSKEDLLCSCD-NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE------- 703 (768)
Q Consensus 637 ~~h~-----~~V~slafsp~g~~lLaSgs-~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~D------- 703 (768)
.... .....+++ ++..++++.. .++.|.+||+.+++.+..+........+++++++..++++..+
T Consensus 122 ~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~ 199 (328)
T 3dsm_A 122 ECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYG 199 (328)
T ss_dssp ECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSC
T ss_pred EcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCCEEEEECCCccCCccc
Confidence 3222 14567777 3456776654 4889999999999999888876777889999987755555443
Q ss_pred ---CeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 704 ---NYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 704 ---g~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
+.|.+||..+.+....+ .+ .....+..++|+|++++|+++.. .|.+||
T Consensus 200 ~~~~~v~~id~~t~~v~~~~------~~---------~~g~~p~~la~~~d~~~lyv~~~--~v~~~d 250 (328)
T 3dsm_A 200 YEAPSLYRIDAETFTVEKQF------KF---------KLGDWPSEVQLNGTRDTLYWINN--DIWRMP 250 (328)
T ss_dssp BCCCEEEEEETTTTEEEEEE------EC---------CTTCCCEEEEECTTSCEEEEESS--SEEEEE
T ss_pred cCCceEEEEECCCCeEEEEE------ec---------CCCCCceeEEEecCCCEEEEEcc--EEEEEE
Confidence 68889988876543211 11 11235789999999998888754 777775
No 200
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.24 E-value=2.1e-09 Score=115.37 Aligned_cols=163 Identities=12% Similarity=0.105 Sum_probs=122.4
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-EEEEe---------ccCCCCEEEEEEcC-CCCEEEEEe-CCCc
Q 004207 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT-VKSTL---------EEHTQWITDVRFSP-SLSRLATSS-ADRT 620 (768)
Q Consensus 553 ~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~-~~~tl---------~~h~~~V~sl~fsp-dg~~LaTgs-~Dgt 620 (768)
++-.....|+++++|+++++...++.|++||.+... .+..+ ..+......|+|+| ++.++++.+ .++.
T Consensus 88 ~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~ 167 (329)
T 3fvz_A 88 NLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSR 167 (329)
T ss_dssp TTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCE
T ss_pred CccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCe
Confidence 445678999999999988888889999999986542 45555 24445789999999 788888876 6899
Q ss_pred EEEEECCCCCeeEEEeec----------CCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec---CCCeeE
Q 004207 621 VRVWDTENPDYSLRTFTG----------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC---QSGATQ 687 (768)
Q Consensus 621 IrVWDl~t~~~~~~~~~~----------h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~---~~~i~s 687 (768)
|++||.+ +.. +..+.. +-....+|+++|++..++++...++.|++||..+++.+..+.. ...+..
T Consensus 168 I~~~~~~-g~~-~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~ 245 (329)
T 3fvz_A 168 IVQFSPS-GKF-VTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFA 245 (329)
T ss_dssp EEEECTT-SCE-EEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEE
T ss_pred EEEEcCC-CCE-EEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcce
Confidence 9999954 443 444432 2234899999999777888888899999999998998888753 346788
Q ss_pred EEEecCCCEEEEEE--------cCCeEEEEECCCceEeee
Q 004207 688 MRFQPRLGRILAAA--------IENYISILDVETQVCRLK 719 (768)
Q Consensus 688 l~fsp~~~~llags--------~Dg~I~IwD~~t~~~~~~ 719 (768)
++|+| +.++... .+..|++||..++.....
T Consensus 246 ~~~~p--g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~ 283 (329)
T 3fvz_A 246 ISYIP--GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDV 283 (329)
T ss_dssp EEEET--TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEE
T ss_pred eeecC--CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEE
Confidence 99999 3333332 244799999988776544
No 201
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.23 E-value=5.9e-09 Score=110.07 Aligned_cols=215 Identities=10% Similarity=-0.005 Sum_probs=141.0
Q ss_pred CCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004207 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (768)
Q Consensus 506 ~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~ 585 (768)
..++.+...++.|..|...... .. .+ .+...+.+++++++|+++++. +..|.+||.+
T Consensus 25 ~~l~~~d~~~~~i~~~d~~~~~-----------------~~---~~-~~~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~ 81 (297)
T 3g4e_A 25 NSLLFVDIPAKKVCRWDSFTKQ-----------------VQ---RV-TMDAPVSSVALRQSGGYVATI--GTKFCALNWK 81 (297)
T ss_dssp TEEEEEETTTTEEEEEETTTCC-----------------EE---EE-ECSSCEEEEEEBTTSSEEEEE--TTEEEEEETT
T ss_pred CEEEEEECCCCEEEEEECCCCc-----------------EE---EE-eCCCceEEEEECCCCCEEEEE--CCeEEEEECC
Confidence 4566666677788888543221 01 11 123569999999999965543 5689999998
Q ss_pred CCeEEEEecc----CCCCEEEEEEcCCCCEEEEEeCC---------CcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCC
Q 004207 586 SFTVKSTLEE----HTQWITDVRFSPSLSRLATSSAD---------RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK 652 (768)
Q Consensus 586 t~~~~~tl~~----h~~~V~sl~fspdg~~LaTgs~D---------gtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g 652 (768)
+++....... ....+.+++++|+|+++++...+ ....||.++.... +..+..+......++|+|++
T Consensus 82 ~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~-~~~~~~~~~~pngi~~spdg 160 (297)
T 3g4e_A 82 EQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHH-VKKYFDQVDISNGLDWSLDH 160 (297)
T ss_dssp TTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSC-EEEEEEEESBEEEEEECTTS
T ss_pred CCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCC-EEEEeeccccccceEEcCCC
Confidence 8775433321 12358899999999977765322 2345555543222 22233344567899999999
Q ss_pred CeEEEEEeCCCcEEEEEC--CCCeeE--EEEe----cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeE
Q 004207 653 EDLLCSCDNNSEIRYWSI--NNGSCA--GVFK----CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLE 724 (768)
Q Consensus 653 ~~lLaSgs~Dg~I~iWDl--~sg~~i--~~~~----~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~ 724 (768)
+.++++.+.++.|.+||+ .++... ..+. ....+..+++++++..+++....+.|.+||..+++....
T Consensus 161 ~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~----- 235 (297)
T 3g4e_A 161 KIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQT----- 235 (297)
T ss_dssp CEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEE-----
T ss_pred CEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEE-----
Confidence 888888888899999997 455432 2221 124577899999987666666778899999876654322
Q ss_pred EeecCCCceEEeccCCCCeeEEEEe-CCCCEEEEEEC
Q 004207 725 LWNMTENKTLTLSAHDKLVSSLAAS-TVNGMVASASH 760 (768)
Q Consensus 725 iwd~~~~~~~~l~~H~~~I~sla~s-pdg~~LaSgs~ 760 (768)
+..+...+++++|. |+++.|++++.
T Consensus 236 -----------i~~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 236 -----------VKLPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp -----------EECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred -----------EECCCCCceEEEEeCCCCCEEEEEcC
Confidence 22344568999998 88876665553
No 202
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.19 E-value=5.6e-10 Score=133.45 Aligned_cols=195 Identities=11% Similarity=0.069 Sum_probs=129.7
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCc--------
Q 004207 554 STSKVESCHFSPDGKLLATGGHD-----KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT-------- 620 (768)
Q Consensus 554 H~~~I~sl~fSpdg~~LaSgs~D-----g~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~Dgt-------- 620 (768)
|...+.+++|||||++||.++.+ ..|++||+.+++.+... .+...+..++|+|| +.|+.++.|+.
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~ 238 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQA 238 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC--------
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCccccccccc
Confidence 33468899999999998877554 36999999999876432 12222357899999 99988887664
Q ss_pred ------EEEEECCCCCee-EEEee--cCCCCeEEEEEeCCCCeEEEEEeC----CCcEEEEECCCC--eeEEEEe-cCCC
Q 004207 621 ------VRVWDTENPDYS-LRTFT--GHSTTVMSLDFHPSKEDLLCSCDN----NSEIRYWSINNG--SCAGVFK-CQSG 684 (768)
Q Consensus 621 ------IrVWDl~t~~~~-~~~~~--~h~~~V~slafsp~g~~lLaSgs~----Dg~I~iWDl~sg--~~i~~~~-~~~~ 684 (768)
|++|++.++... ...+. .+...+.++.|+|+|+.+++++.. +..|++||+.++ .+...+. ....
T Consensus 239 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~ 318 (741)
T 1yr2_A 239 LNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKA 318 (741)
T ss_dssp CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSS
T ss_pred CCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCc
Confidence 899999776521 22232 233458899999999977766642 348999999877 4133333 3334
Q ss_pred eeEEEEecCCCEEEEEEcC----CeEEEEECCCceEeeecceeEEeecCCCceE-EeccCCCCeeEEEEeCCCCEEEEEE
Q 004207 685 ATQMRFQPRLGRILAAAIE----NYISILDVETQVCRLKLQTLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASAS 759 (768)
Q Consensus 685 i~sl~fsp~~~~llags~D----g~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~-~l~~H~~~I~sla~spdg~~LaSgs 759 (768)
+... ++|++..|+..+.+ ..|.+||+.+.. .... .+..+...+.+++|+ ++.++++..
T Consensus 319 ~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~---------------~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~ 381 (741)
T 1yr2_A 319 QWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGST---------------PRFDTVVPESKDNLESVGIA-GNRLFASYI 381 (741)
T ss_dssp CEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSS---------------CEEEEEECCCSSEEEEEEEE-BTEEEEEEE
T ss_pred eEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCc---------------cccEEEecCCCCeEEEEEEE-CCEEEEEEE
Confidence 4444 45888888888764 347777776531 0111 122344456677777 556778888
Q ss_pred CCCcEEEe
Q 004207 760 HDKCVKIW 767 (768)
Q Consensus 760 ~DG~V~IW 767 (768)
.|+..+||
T Consensus 382 ~dg~~~l~ 389 (741)
T 1yr2_A 382 HDAKSQVL 389 (741)
T ss_dssp ETTEEEEE
T ss_pred ECCEEEEE
Confidence 88887776
No 203
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.19 E-value=5.1e-09 Score=109.96 Aligned_cols=200 Identities=8% Similarity=0.056 Sum_probs=135.4
Q ss_pred CCCCCeEEEEEcCCCCEEEE-------EeCCCcEEEEECCCCeEEEEec----cCCCCEEEEEEcCC-CCEEEEEeCCCc
Q 004207 553 ASTSKVESCHFSPDGKLLAT-------GGHDKKAVLWCTESFTVKSTLE----EHTQWITDVRFSPS-LSRLATSSADRT 620 (768)
Q Consensus 553 ~H~~~I~sl~fSpdg~~LaS-------gs~Dg~I~VWdl~t~~~~~tl~----~h~~~V~sl~fspd-g~~LaTgs~Dgt 620 (768)
..-....+++|++++.++++ +..++.|.+||..+++...... ++...+.+++++++ ++++++ +.++.
T Consensus 15 ~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~-~~~~~ 93 (314)
T 1pjx_A 15 EDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVA-DMRLG 93 (314)
T ss_dssp CCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEE-ETTTE
T ss_pred ccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEE-ECCCC
Confidence 34445789999999988887 5678899999988877653322 24467899999999 654544 44557
Q ss_pred EEEEECCCCCeeEEE-eec----CCCCeEEEEEeCCCCeEEEEEeCC---------------CcEEEEECCCCeeEEEEe
Q 004207 621 VRVWDTENPDYSLRT-FTG----HSTTVMSLDFHPSKEDLLCSCDNN---------------SEIRYWSINNGSCAGVFK 680 (768)
Q Consensus 621 IrVWDl~t~~~~~~~-~~~----h~~~V~slafsp~g~~lLaSgs~D---------------g~I~iWDl~sg~~i~~~~ 680 (768)
|.+||.+ ++. ... ... ....+.++++++++. ++++...+ +.|..||.. ++......
T Consensus 94 l~~~d~~-g~~-~~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~ 169 (314)
T 1pjx_A 94 LLVVQTD-GTF-EEIAKKDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT 169 (314)
T ss_dssp EEEEETT-SCE-EECCSBCTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE
T ss_pred EEEEeCC-CCE-EEEEeccCCCccccCCcCEEECCCCC-EEEEecCcccccccccccccCCCCeEEEECCC-CCEEEecc
Confidence 9999998 553 222 111 123588999999986 44455444 567778776 66554444
Q ss_pred cCCCeeEEEEe----cCCCEEEEEE-cCCeEEEEECC-CceEeeecceeEEeecCCCceEEeccCC-CCeeEEEEeCCCC
Q 004207 681 CQSGATQMRFQ----PRLGRILAAA-IENYISILDVE-TQVCRLKLQTLELWNMTENKTLTLSAHD-KLVSSLAASTVNG 753 (768)
Q Consensus 681 ~~~~i~sl~fs----p~~~~llags-~Dg~I~IwD~~-t~~~~~~~~~I~iwd~~~~~~~~l~~H~-~~I~sla~spdg~ 753 (768)
.......++|+ +++..++++. .++.|.+||.. ++.... ..++ ..+..+. ..+..++++++|.
T Consensus 170 ~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~----~~~~-------~~~~~~~~~~p~~i~~d~~G~ 238 (314)
T 1pjx_A 170 AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIEN----KKVW-------GHIPGTHEGGADGMDFDEDNN 238 (314)
T ss_dssp EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEE----EEEE-------EECCCCSSCEEEEEEEBTTCC
T ss_pred CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCcccc----ceEE-------EECCCCCCCCCCceEECCCCC
Confidence 44567889999 9987766665 57889999875 332110 1111 1122333 5578899999999
Q ss_pred EEEEEECCCcEEEeC
Q 004207 754 MVASASHDKCVKIWK 768 (768)
Q Consensus 754 ~LaSgs~DG~V~IWD 768 (768)
++++...++.|.+||
T Consensus 239 l~v~~~~~~~i~~~d 253 (314)
T 1pjx_A 239 LLVANWGSSHIEVFG 253 (314)
T ss_dssp EEEEEETTTEEEEEC
T ss_pred EEEEEcCCCEEEEEc
Confidence 888887888899886
No 204
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.18 E-value=5.9e-09 Score=110.40 Aligned_cols=208 Identities=7% Similarity=0.005 Sum_probs=142.4
Q ss_pred ecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004207 551 IPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 629 (768)
Q Consensus 551 l~~H~~~I~sl~fSpdg~-~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~ 629 (768)
+..+.....+..|+++++ ++++...++.|..|+. +++ ...+..+...+..++|+++++++++...++.|.+||.+ +
T Consensus 40 l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g 116 (305)
T 3dr2_A 40 LYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-G 116 (305)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred EecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-C
Confidence 334555678899999998 5667777889999998 444 34454566779999999999876665566889999986 4
Q ss_pred CeeEEEeecC-----CCCeEEEEEeCCCCeEEEE----EeC-------------CCcEEEEECCCCeeEEEEecCCCeeE
Q 004207 630 DYSLRTFTGH-----STTVMSLDFHPSKEDLLCS----CDN-------------NSEIRYWSINNGSCAGVFKCQSGATQ 687 (768)
Q Consensus 630 ~~~~~~~~~h-----~~~V~slafsp~g~~lLaS----gs~-------------Dg~I~iWDl~sg~~i~~~~~~~~i~s 687 (768)
.. ..+..+ ...+.+++++++|. ++++ |.. .+.|..||..+++..... .......
T Consensus 117 ~~--~~~~~~~~~~~~~~~~~i~~d~dG~-l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~g 192 (305)
T 3dr2_A 117 QA--HLLVGRYAGKRLNSPNDLIVARDGA-IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNG 192 (305)
T ss_dssp CE--EEEECEETTEECSCCCCEEECTTSC-EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEE
T ss_pred CE--EEEEeccCCCccCCCCCEEECCCCC-EEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcc
Confidence 43 222111 13467899999987 5544 321 256888888777655544 4455678
Q ss_pred EEEecCCCEEEEEEcC------CeEEEEECCCceE-----eee---------------------cceeEEeecCCCceEE
Q 004207 688 MRFQPRLGRILAAAIE------NYISILDVETQVC-----RLK---------------------LQTLELWNMTENKTLT 735 (768)
Q Consensus 688 l~fsp~~~~llags~D------g~I~IwD~~t~~~-----~~~---------------------~~~I~iwd~~~~~~~~ 735 (768)
++|+|++..|+++... +.|.+||+..... ... ...|.+|+........
T Consensus 193 l~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~~~gv~~~~~~g~~~~~ 272 (305)
T 3dr2_A 193 LAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSSGTGVCVFDSDGQLLGH 272 (305)
T ss_dssp EEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECCSSEEEEECTTSCEEEE
T ss_pred eEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEecCCcEEEECCCCCEEEE
Confidence 9999999988887765 6899999764321 000 0146667764443334
Q ss_pred eccCCCCeeEEEEeCCCCEEEEEECCCcEEE
Q 004207 736 LSAHDKLVSSLAASTVNGMVASASHDKCVKI 766 (768)
Q Consensus 736 l~~H~~~I~sla~spdg~~LaSgs~DG~V~I 766 (768)
+..+. .+.+++|+++++.|+.++.++..++
T Consensus 273 ~~~~~-~~~~~~f~~d~~~L~it~~~~l~~~ 302 (305)
T 3dr2_A 273 IPTPG-TASNCTFDQAQQRLFITGGPCLWML 302 (305)
T ss_dssp EECSS-CCCEEEECTTSCEEEEEETTEEEEE
T ss_pred EECCC-ceeEEEEeCCCCEEEEEcCCeEEEE
Confidence 44333 5889999999998988888776655
No 205
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.14 E-value=5.2e-09 Score=115.20 Aligned_cols=214 Identities=12% Similarity=0.123 Sum_probs=140.1
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEe----------CCCcEEEEECCCCeEEEEeccCC-------CCEEEEEEcCCCC
Q 004207 548 FQLIPASTSKVESCHFSPDGKLLATGG----------HDKKAVLWCTESFTVKSTLEEHT-------QWITDVRFSPSLS 610 (768)
Q Consensus 548 ~~~l~~H~~~I~sl~fSpdg~~LaSgs----------~Dg~I~VWdl~t~~~~~tl~~h~-------~~V~sl~fspdg~ 610 (768)
+..+.....+ . +.++|||+++++++ .++.|.+||..+++.+.++.... .....++|+|||+
T Consensus 72 ~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk 149 (386)
T 3sjl_D 72 IGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGK 149 (386)
T ss_dssp EEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSS
T ss_pred EEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCC
Confidence 3344444444 4 99999999887765 36789999999999998875321 2356799999999
Q ss_pred EEEEEeC--CCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCC-CeeEEEEec-----C
Q 004207 611 RLATSSA--DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKC-----Q 682 (768)
Q Consensus 611 ~LaTgs~--DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~s-g~~i~~~~~-----~ 682 (768)
+|+++.. ++.|.|+|+.+.+. +..+.-. + |..+.|.+...+++.+.||.+.++++.+ ++.+..... .
T Consensus 150 ~lyVan~~~~~~VsVID~~t~~v-v~tI~v~-g---~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~ 224 (386)
T 3sjl_D 150 TLLFYQFSPAPAVGVVDLEGKAF-KRMLDVP-D---CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPED 224 (386)
T ss_dssp EEEEEECSSSCEEEEEETTTTEE-EEEEECC-S---EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTT
T ss_pred EEEEEEcCCCCeEEEEECCCCcE-EEEEECC-C---cceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceecccc
Confidence 9998874 68999999998775 4454321 1 2233455555565777799999999976 555332211 1
Q ss_pred CCe-eEEEEecCCCEEEEEEcCCeEEEEECCCce--Eeeec---------------------------------------
Q 004207 683 SGA-TQMRFQPRLGRILAAAIENYISILDVETQV--CRLKL--------------------------------------- 720 (768)
Q Consensus 683 ~~i-~sl~fsp~~~~llags~Dg~I~IwD~~t~~--~~~~~--------------------------------------- 720 (768)
..+ ....|.+..+.++..+.++.|+++|+.+.. ....+
T Consensus 225 ~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~ 304 (386)
T 3sjl_D 225 EFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEW 304 (386)
T ss_dssp SCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTT
T ss_pred ccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEecccccc
Confidence 111 124665334455567778999999986542 11000
Q ss_pred ------ceeEEeecCCCceEEeccCCCCeeEEEEeCCCC-EEEEEE-CCCcEEEeC
Q 004207 721 ------QTLELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVASAS-HDKCVKIWK 768 (768)
Q Consensus 721 ------~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~-~LaSgs-~DG~V~IWD 768 (768)
..|.+.|..+.+++....-...+.+|++++|++ +|+++. .++.|.|+|
T Consensus 305 ~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn~~~~~VsViD 360 (386)
T 3sjl_D 305 RHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHD 360 (386)
T ss_dssp CTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEEEEEETTTTEEEEEE
T ss_pred ccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEEEEEcCCCCeEEEEE
Confidence 134466666666654332234678999999996 666654 589999886
No 206
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.13 E-value=2.5e-08 Score=107.00 Aligned_cols=182 Identities=13% Similarity=0.006 Sum_probs=121.5
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecc----CCCCEEEEEEcCCCCEEEEEeC------CCcEEEEE
Q 004207 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE----HTQWITDVRFSPSLSRLATSSA------DRTVRVWD 625 (768)
Q Consensus 556 ~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~----h~~~V~sl~fspdg~~LaTgs~------DgtIrVWD 625 (768)
..|.+++|+++|+++++. .+ .|.+||..+++....... ....+.+++++|+|+++++... .+.|..+|
T Consensus 90 ~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~ 167 (326)
T 2ghs_A 90 FMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA 167 (326)
T ss_dssp SCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE
T ss_pred CcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe
Confidence 569999999999877754 44 599999988776533221 1235899999999987766542 24555555
Q ss_pred CCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECC--CC-eeE--EEEe----cCCCeeEEEEecCCCE
Q 004207 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN--NG-SCA--GVFK----CQSGATQMRFQPRLGR 696 (768)
Q Consensus 626 l~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~--sg-~~i--~~~~----~~~~i~sl~fsp~~~~ 696 (768)
+++ +..+..+......++|+|+++.++++.+.++.|.+||+. ++ ... ..+. ....+..+++++++..
T Consensus 168 --~g~--~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~l 243 (326)
T 2ghs_A 168 --KGK--VTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHI 243 (326)
T ss_dssp --TTE--EEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCE
T ss_pred --CCc--EEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCE
Confidence 333 233333334678999999998787777778899999986 55 321 1221 1234678899999876
Q ss_pred EEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEe-CCCCEEEEEEC
Q 004207 697 ILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAAS-TVNGMVASASH 760 (768)
Q Consensus 697 llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~s-pdg~~LaSgs~ 760 (768)
+++...++.|.+||.. +.... .+..+...|++++|+ ++++.|++++.
T Consensus 244 wva~~~~~~v~~~d~~-g~~~~----------------~i~~~~~~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 244 WNARWGEGAVDRYDTD-GNHIA----------------RYEVPGKQTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp EEEEETTTEEEEECTT-CCEEE----------------EEECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred EEEEeCCCEEEEECCC-CCEEE----------------EEECCCCCcEEEEEecCCCCEEEEEec
Confidence 6666667889888874 32211 122344568999998 88877765554
No 207
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.12 E-value=1.2e-08 Score=113.40 Aligned_cols=203 Identities=11% Similarity=0.090 Sum_probs=132.1
Q ss_pred EEEcCCCCEEEEEeCCC--cEEEEECCCCeEEEEe----ccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEE
Q 004207 561 CHFSPDGKLLATGGHDK--KAVLWCTESFTVKSTL----EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 634 (768)
Q Consensus 561 l~fSpdg~~LaSgs~Dg--~I~VWdl~t~~~~~tl----~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~ 634 (768)
++|++++++|+++..++ .|.+|+..++.....+ ......+.+++++|++..|+++..++.|+.||..++...+.
T Consensus 176 ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~ 255 (409)
T 3hrp_A 176 PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLI 255 (409)
T ss_dssp CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEE
T ss_pred eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEE
Confidence 89999999999888766 7889988765543343 22446678999999655666677888999999987653222
Q ss_pred E---eecCCCCe-E-EEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecC----------------CCeeEEEEecC
Q 004207 635 T---FTGHSTTV-M-SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ----------------SGATQMRFQPR 693 (768)
Q Consensus 635 ~---~~~h~~~V-~-slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~----------------~~i~sl~fsp~ 693 (768)
. ..++...- . .++|+|++..++++...++.|+.||.... . ..+... .....++++++
T Consensus 256 ~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~-~-~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~d 333 (409)
T 3hrp_A 256 KQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE-C-EWFCGSATQKTVQDGLREEALFAQPNGMTVDED 333 (409)
T ss_dssp EECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC-E-EEEEECTTCCSCBCEEGGGCBCSSEEEEEECTT
T ss_pred ecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC-E-EEEEeCCCCCCcCCCcccccEeCCCeEEEEeCC
Confidence 1 12222222 3 99999977778888888899999997643 2 222221 23678999999
Q ss_pred CCEEEEEE-cCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 004207 694 LGRILAAA-IENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 767 (768)
Q Consensus 694 ~~~llags-~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IW 767 (768)
+..+++-. .++.|+.||+.++........-..+....+. .....-.....|++++++.++++-..++.|+.+
T Consensus 334 G~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~--~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i 406 (409)
T 3hrp_A 334 GNFYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGT--PLEATFNYPYDICYDGEGGYWIAEAWGKAIRKY 406 (409)
T ss_dssp CCEEEEETTTTCEEEEEETTTTEEEEEEECTTCBSCCCBS--TTTCCBSSEEEEEECSSSEEEEEESTTCEEEEE
T ss_pred CCEEEEeCCCCCEEEEEECCCCEEEEEeCCCCCCCcCCCC--hhceEeCCceEEEEcCCCCEEEEECCCCeEEEE
Confidence 88655555 6788999997665432111000000000000 000112458899999998777777778888765
No 208
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.11 E-value=5e-08 Score=101.12 Aligned_cols=197 Identities=9% Similarity=-0.008 Sum_probs=138.0
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE-EeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q 004207 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 630 (768)
Q Consensus 552 ~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~-tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~ 630 (768)
......+.++++.++|+++++...++.|.+||.. ++... .+..+...+.++++++++.++++...++.|.+||.. ++
T Consensus 16 ~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~ 93 (300)
T 2qc5_A 16 SIPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GG 93 (300)
T ss_dssp SSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred CCCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CC
Confidence 3455679999999999988877778999999988 55543 223334678999999999888777668899999988 55
Q ss_pred eeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEE-Ee-cCCCeeEEEEecCCCEEEEEEcCCeEEE
Q 004207 631 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV-FK-CQSGATQMRFQPRLGRILAAAIENYISI 708 (768)
Q Consensus 631 ~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~-~~-~~~~i~sl~fsp~~~~llags~Dg~I~I 708 (768)
............+.++++.+++. ++++...++.|..||.. ++.... +. ....+..+++.+++..+++...++.|.+
T Consensus 94 ~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~ 171 (300)
T 2qc5_A 94 FTEYPLPQPDSGPYGITEGLNGD-IWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGR 171 (300)
T ss_dssp EEEEECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEE
T ss_pred eEEecCCCCCCCCccceECCCCC-EEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEE
Confidence 42223333446789999999876 56566667889999987 655432 22 2356888999998875544445778998
Q ss_pred EECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 709 LDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 709 wD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
||. ++... .+. ...+...+.++++++++.++++....+.|.+||
T Consensus 172 ~~~-~g~~~-------~~~--------~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~ 215 (300)
T 2qc5_A 172 ITN-TGKLE-------EYP--------LPTNAAAPVGITSGNDGALWFVEIMGNKIGRIT 215 (300)
T ss_dssp ECT-TCCEE-------EEE--------CSSTTCCEEEEEECTTSSEEEEETTTTEEEEEC
T ss_pred ECC-CCcEE-------Eee--------CCCCCCCcceEEECCCCCEEEEccCCCEEEEEc
Confidence 987 33221 111 112345678899998887766665666777775
No 209
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.09 E-value=1.3e-09 Score=120.31 Aligned_cols=177 Identities=10% Similarity=0.010 Sum_probs=125.5
Q ss_pred cccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 004207 501 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAV 580 (768)
Q Consensus 501 ~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~ 580 (768)
++.....++++|+.|+ +.+|...+-. .... ..... +.....+ .+.. |+.++| |+++|+++ .++.|+
T Consensus 44 ais~~~gll~a~~~~~-l~v~~~~~l~---~~~~---~~~~~--~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~ 109 (388)
T 1xip_A 44 DISNSKSLFVAASGSK-AVVGELQLLR---DHIT---SDSTP--LTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALY 109 (388)
T ss_dssp EEETTTTEEEEEETTE-EEEEEHHHHH---HHHH---SSSCC--CCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEE
T ss_pred EEcCCCCEEEEeCCCE-EEEEEhhHhh---hhhc---ccccc--ccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEE
Confidence 3345667888888874 4457432110 0000 00000 1111122 3556 999999 99999999 889999
Q ss_pred EEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEe
Q 004207 581 LWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD 660 (768)
Q Consensus 581 VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs 660 (768)
+||+.+.........|...|.++.+.+. .+++++.||.|.+||+.++.. .. +...|+|++|+|+| ++.|.
T Consensus 110 v~dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~-~~----~~~~Vs~v~WSpkG---~~vg~ 179 (388)
T 1xip_A 110 SLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKST-KQ----LAQNVTSFDVTNSQ---LAVLL 179 (388)
T ss_dssp EEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCE-EE----EEESEEEEEECSSE---EEEEE
T ss_pred EEEchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcc-cc----ccCCceEEEEcCCc---eEEEE
Confidence 9999887766667778888999888765 388899999999999997664 22 34689999999998 45688
Q ss_pred CCCcEEEEECCCCee--EEEEe----------cCCCeeEEEEecCCCEEEEEE
Q 004207 661 NNSEIRYWSINNGSC--AGVFK----------CQSGATQMRFQPRLGRILAAA 701 (768)
Q Consensus 661 ~Dg~I~iWDl~sg~~--i~~~~----------~~~~i~sl~fsp~~~~llags 701 (768)
.||.|++|+...+.+ ..++. +...|.++.|.+++.++++-+
T Consensus 180 ~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 180 KDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp TTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred cCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 899999999988776 55662 245689999999877766533
No 210
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.08 E-value=9.4e-09 Score=114.34 Aligned_cols=202 Identities=9% Similarity=0.039 Sum_probs=137.1
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCC--cEEEEECCCCCeeE
Q 004207 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR--TVRVWDTENPDYSL 633 (768)
Q Consensus 556 ~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~Dg--tIrVWDl~t~~~~~ 633 (768)
....+|+|+++++++++...++.|++||.+++.+......... .. ++|+++++.|+++..++ .|.+|+...+.. .
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~-~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~-~ 207 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKG-GK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWA-P 207 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCB-CB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTC-E
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCC-Cc-eeEecCCCcEEEEecCCCceEEEEEcCCCce-e
Confidence 4578999999999888877789999999998877665544333 34 99999999999988876 788888876543 2
Q ss_pred EEe---ec-CCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEE----EecCCCe--e-EEEEecCCCEEEEEE-
Q 004207 634 RTF---TG-HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV----FKCQSGA--T-QMRFQPRLGRILAAA- 701 (768)
Q Consensus 634 ~~~---~~-h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~----~~~~~~i--~-sl~fsp~~~~llags- 701 (768)
..+ .. ....+.+++++|++..+++ +..++.|+.||..++..... ....... . .++|+|+++.|+++.
T Consensus 208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~ 286 (409)
T 3hrp_A 208 TRIGQLGSTFSGKIGAVALDETEEWLYF-VDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQ 286 (409)
T ss_dssp EEEEECCTTSCSCCCBCEECTTSSEEEE-ECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEET
T ss_pred EEeeeccchhcCCcEEEEEeCCCCeEEE-EECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeC
Confidence 232 12 4466889999996566665 66688999999987764332 1111222 2 899999766666665
Q ss_pred cCCeEEEEECCCceEeeecceeEEeecC--CCce--EEeccCCCCeeEEEEeCCCCEEEEEE-CCCcEEEeC
Q 004207 702 IENYISILDVETQVCRLKLQTLELWNMT--ENKT--LTLSAHDKLVSSLAASTVNGMVASAS-HDKCVKIWK 768 (768)
Q Consensus 702 ~Dg~I~IwD~~t~~~~~~~~~I~iwd~~--~~~~--~~l~~H~~~I~sla~spdg~~LaSgs-~DG~V~IWD 768 (768)
.++.|+.||....... +.... .+.. ......-.....++|++++.++++-+ .++.|++|+
T Consensus 287 ~~~~I~~~~~~g~~~~-------~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~ 351 (409)
T 3hrp_A 287 NLSSVYKITPDGECEW-------FCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLD 351 (409)
T ss_dssp TTTEEEEECTTCCEEE-------EEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEE
T ss_pred CCCEEEEEecCCCEEE-------EEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEE
Confidence 5678999987653111 00100 0000 00001124578999999999777777 788888875
No 211
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.06 E-value=7.9e-08 Score=101.35 Aligned_cols=202 Identities=10% Similarity=0.043 Sum_probs=129.9
Q ss_pred cCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q 004207 552 PASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 630 (768)
Q Consensus 552 ~~H~~~I~sl~fSpdg~-~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~ 630 (768)
..+..-..+..|++++. ++++...++.|+.||..+++.. .+. ....+.+++|+++++++++ . +..|.+||.++++
T Consensus 9 ~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~ 84 (297)
T 3g4e_A 9 PENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVT-MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQS 84 (297)
T ss_dssp CCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEE-CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTE
T ss_pred ccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEe-CCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCc
Confidence 34444567899999654 5666667889999999887653 332 3467999999999995554 4 5679999998765
Q ss_pred eeEEEee-c--CCCCeEEEEEeCCCCeEEEEEeC--------CCcEEEEECCC-CeeEEEEecCCCeeEEEEecCCCEEE
Q 004207 631 YSLRTFT-G--HSTTVMSLDFHPSKEDLLCSCDN--------NSEIRYWSINN-GSCAGVFKCQSGATQMRFQPRLGRIL 698 (768)
Q Consensus 631 ~~~~~~~-~--h~~~V~slafsp~g~~lLaSgs~--------Dg~I~iWDl~s-g~~i~~~~~~~~i~sl~fsp~~~~ll 698 (768)
....... . ....+.+++++|+|..++.+... .....+|.+.. ++.............++|+|++..++
T Consensus 85 ~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~ly 164 (297)
T 3g4e_A 85 AVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFY 164 (297)
T ss_dssp EEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEE
T ss_pred EEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEEE
Confidence 4221111 1 12357889999998844433221 12234554432 44444344445567899999998876
Q ss_pred EEE-cCCeEEEEEC--CCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 699 AAA-IENYISILDV--ETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 699 ags-~Dg~I~IwD~--~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
++. .++.|.+||+ .++.... .++ ...+..+...+..++++++|.+.++...++.|.+||
T Consensus 165 v~~~~~~~i~~~~~d~~~G~~~~----~~~-------~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d 226 (297)
T 3g4e_A 165 YIDSLSYSVDAFDYDLQTGQISN----RRS-------VYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLD 226 (297)
T ss_dssp EEEGGGTEEEEEEECTTTCCEEE----EEE-------EEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEEC
T ss_pred EecCCCCcEEEEeccCCCCcccC----cEE-------EEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEc
Confidence 665 4688999987 3433211 011 111222345678899999998877777778888886
No 212
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.05 E-value=6e-09 Score=124.55 Aligned_cols=193 Identities=10% Similarity=-0.006 Sum_probs=122.4
Q ss_pred eEEEEEcCCCCEEEEEeCCCc--------------EEEEECCCCe----EEEEeccCCCCEEEEEEcCCCCEEEEEeCCC
Q 004207 558 VESCHFSPDGKLLATGGHDKK--------------AVLWCTESFT----VKSTLEEHTQWITDVRFSPSLSRLATSSADR 619 (768)
Q Consensus 558 I~sl~fSpdg~~LaSgs~Dg~--------------I~VWdl~t~~----~~~tl~~h~~~V~sl~fspdg~~LaTgs~Dg 619 (768)
+..++|+|| +.|+.++.|+. |++|++.++. ++.....+...+..+.|+|||++|+..+.++
T Consensus 211 ~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~ 289 (741)
T 1yr2_A 211 FSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEG 289 (741)
T ss_dssp SCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECT
T ss_pred eccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEcc
Confidence 357899999 98888877654 8899987764 2222233434689999999999988877554
Q ss_pred -----cEEEEECCCCCee-EEEeecCCCCeEEEEEeCCCCeEEEEEeC---CCcEEEEECCCC--eeEEEEecCC-CeeE
Q 004207 620 -----TVRVWDTENPDYS-LRTFTGHSTTVMSLDFHPSKEDLLCSCDN---NSEIRYWSINNG--SCAGVFKCQS-GATQ 687 (768)
Q Consensus 620 -----tIrVWDl~t~~~~-~~~~~~h~~~V~slafsp~g~~lLaSgs~---Dg~I~iWDl~sg--~~i~~~~~~~-~i~s 687 (768)
.|++||+.++... ...+..+...+.... .|+++.+++.... ++.|.+||+.++ .....+.... .+..
T Consensus 290 ~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~ 368 (741)
T 1yr2_A 290 TDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLES 368 (741)
T ss_dssp TCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEE
T ss_pred CCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEE
Confidence 8999999876322 445555555555554 4888877766543 456999999874 3444443332 3556
Q ss_pred EEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEec-cCCCCeeEEEEeCCCCEEE-EEE---CCC
Q 004207 688 MRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLS-AHDKLVSSLAASTVNGMVA-SAS---HDK 762 (768)
Q Consensus 688 l~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~-~H~~~I~sla~spdg~~La-Sgs---~DG 762 (768)
++|. .+..+++...|+..+||.+. +..+....+. .+.+.|..++++|++..|+ +.+ ..+
T Consensus 369 ~~~~-~~~lv~~~~~dg~~~l~~~~---------------~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~ 432 (741)
T 1yr2_A 369 VGIA-GNRLFASYIHDAKSQVLAFD---------------LDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPA 432 (741)
T ss_dssp EEEE-BTEEEEEEEETTEEEEEEEE---------------TTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEE
T ss_pred EEEE-CCEEEEEEEECCEEEEEEEe---------------CCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCC
Confidence 7776 33456666678776665432 1111111222 2356688899999887554 322 346
Q ss_pred cEEEeC
Q 004207 763 CVKIWK 768 (768)
Q Consensus 763 ~V~IWD 768 (768)
.|++||
T Consensus 433 ~i~~~d 438 (741)
T 1yr2_A 433 TVLALD 438 (741)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 777775
No 213
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.03 E-value=4.8e-09 Score=124.51 Aligned_cols=197 Identities=13% Similarity=0.058 Sum_probs=127.6
Q ss_pred CCCCCeEEEEEcCCCCEEEEEe-----CCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCc-------
Q 004207 553 ASTSKVESCHFSPDGKLLATGG-----HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT------- 620 (768)
Q Consensus 553 ~H~~~I~sl~fSpdg~~LaSgs-----~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~Dgt------- 620 (768)
+|...|..++|||||++||.+. .+..|+|||+.+++.+.... +......++|+ |++.|+.++.+..
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~ 203 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-KDVKFSGISWL-GNEGFFYSSYDKPDGSELSA 203 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-EEEESCCCEEE-TTTEEEEEESSCCC------
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-CCceeccEEEe-CCCEEEEEEecCcccccccc
Confidence 3555688999999999888432 23579999999998654321 11113568899 9999999888754
Q ss_pred ------EEEEECCCCCe---eEEEeec-CCCCeEEEEEeCCCCeEEEEEeC---CCcEEEEECCCCe-eEEEEec-CCCe
Q 004207 621 ------VRVWDTENPDY---SLRTFTG-HSTTVMSLDFHPSKEDLLCSCDN---NSEIRYWSINNGS-CAGVFKC-QSGA 685 (768)
Q Consensus 621 ------IrVWDl~t~~~---~~~~~~~-h~~~V~slafsp~g~~lLaSgs~---Dg~I~iWDl~sg~-~i~~~~~-~~~i 685 (768)
|++|++.++.. .+..... |...+.++.|+|+|+.++++... +..|++||+.++. ....+.. ....
T Consensus 204 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~ 283 (693)
T 3iuj_A 204 RTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDAD 283 (693)
T ss_dssp -CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSC
T ss_pred cCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCce
Confidence 99999987642 2222233 44567889999999988777653 3589999998763 2333333 3333
Q ss_pred eEEEEecCCCEEEEEEcC----CeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEEC-
Q 004207 686 TQMRFQPRLGRILAAAIE----NYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASH- 760 (768)
Q Consensus 686 ~sl~fsp~~~~llags~D----g~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~- 760 (768)
... |+++++.|+..+.. +.|.++|+.+.... ....+..|...+. .|++++++|+....
T Consensus 284 ~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~--------------~~~~l~~~~~~~~--~~s~~g~~lv~~~~~ 346 (693)
T 3iuj_A 284 VSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPA--------------HWRDLIPERQQVL--TVHSGSGYLFAEYMV 346 (693)
T ss_dssp EEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGG--------------GCEEEECCCSSCE--EEEEETTEEEEEEEE
T ss_pred EEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCcc--------------ccEEEecCCCCEE--EEEEECCEEEEEEEE
Confidence 333 67777777766643 45666666553210 0123345555554 78888887776654
Q ss_pred CC--cEEEeC
Q 004207 761 DK--CVKIWK 768 (768)
Q Consensus 761 DG--~V~IWD 768 (768)
|+ .|++||
T Consensus 347 ~g~~~l~~~d 356 (693)
T 3iuj_A 347 DATARVEQFD 356 (693)
T ss_dssp TTEEEEEEEC
T ss_pred CCeeEEEEEE
Confidence 44 566664
No 214
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.03 E-value=1.2e-08 Score=113.89 Aligned_cols=214 Identities=12% Similarity=0.108 Sum_probs=137.0
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEe----------CCCcEEEEECCCCeEEEEeccC-------CCCEEEEEEcCCCC
Q 004207 548 FQLIPASTSKVESCHFSPDGKLLATGG----------HDKKAVLWCTESFTVKSTLEEH-------TQWITDVRFSPSLS 610 (768)
Q Consensus 548 ~~~l~~H~~~I~sl~fSpdg~~LaSgs----------~Dg~I~VWdl~t~~~~~tl~~h-------~~~V~sl~fspdg~ 610 (768)
+..+..-..+ .+.++|||++|+++. .++.|.++|..+++.+.++... ......++|+||++
T Consensus 112 v~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk 189 (426)
T 3c75_H 112 LGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNK 189 (426)
T ss_dssp EEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSS
T ss_pred EEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCC
Confidence 3334333445 799999999888775 3678999999999998877532 12345789999999
Q ss_pred EEEEEeC--CCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEE----ecC-C
Q 004207 611 RLATSSA--DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF----KCQ-S 683 (768)
Q Consensus 611 ~LaTgs~--DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~----~~~-~ 683 (768)
+|+++.. +++|.|.|+.+.+. +..+.-. + +....|++...+++.+.||.+.+.++.+++..... ... .
T Consensus 190 ~lyV~n~~~~~~VsVID~~t~kv-v~~I~v~-g---~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~ 264 (426)
T 3c75_H 190 NLLFYQFSPAPAVGVVDLEGKTF-DRMLDVP-D---CYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDE 264 (426)
T ss_dssp EEEEEECSSSCEEEEEETTTTEE-EEEEECC-S---EEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTS
T ss_pred EEEEEecCCCCeEEEEECCCCeE-EEEEEcC-C---ceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCC
Confidence 9999875 57899999998775 4444421 1 13445555556666677888888888655544221 111 1
Q ss_pred C-eeEEEEecCCCEEEEEEcCCeEEEEECCCceEe---------------------------e--------e--------
Q 004207 684 G-ATQMRFQPRLGRILAAAIENYISILDVETQVCR---------------------------L--------K-------- 719 (768)
Q Consensus 684 ~-i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~---------------------------~--------~-------- 719 (768)
+ ...+.|.+++..++..+.++.|.++|....... . .
T Consensus 265 p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gt 344 (426)
T 3c75_H 265 LLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWK 344 (426)
T ss_dssp CBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTC
T ss_pred ceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEeccccccc
Confidence 1 123456666666666666666777766321100 0 0
Q ss_pred ----cceeEEeecCCCceEEeccCCCCeeEEEEeCCCC-EEEEEE-CCCcEEEeC
Q 004207 720 ----LQTLELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVASAS-HDKCVKIWK 768 (768)
Q Consensus 720 ----~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~-~LaSgs-~DG~V~IWD 768 (768)
-..|.++|..+.+.+....-......|+|+|+++ +++++. .++.|.|+|
T Consensus 345 hk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~s~~VsVID 399 (426)
T 3c75_H 345 HKAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYALSAGTQTLHIYD 399 (426)
T ss_dssp TTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEE
T ss_pred ccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEcCCCCeEEEEE
Confidence 0124555555555543222222478999999999 888888 589999986
No 215
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.02 E-value=1.2e-08 Score=121.17 Aligned_cols=189 Identities=11% Similarity=0.038 Sum_probs=123.9
Q ss_pred EEEEEcCCCCEEEEEeCCCc-------------EEEEECCCCe----EEEEecc-CCCCEEEEEEcCCCCEEEEEeC---
Q 004207 559 ESCHFSPDGKLLATGGHDKK-------------AVLWCTESFT----VKSTLEE-HTQWITDVRFSPSLSRLATSSA--- 617 (768)
Q Consensus 559 ~sl~fSpdg~~LaSgs~Dg~-------------I~VWdl~t~~----~~~tl~~-h~~~V~sl~fspdg~~LaTgs~--- 617 (768)
.+++|+ |++.|+.++.+.. |++|++.+.. ++..... |...+..+.|+||+++|+....
T Consensus 178 ~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~ 256 (693)
T 3iuj_A 178 SGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANST 256 (693)
T ss_dssp CCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSS
T ss_pred ccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCC
Confidence 467899 9999998887743 9999987654 3333333 4556789999999998765443
Q ss_pred -CCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCC---CcEEEEECCCCee---EEEEecCCCeeEEEE
Q 004207 618 -DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN---SEIRYWSINNGSC---AGVFKCQSGATQMRF 690 (768)
Q Consensus 618 -DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~D---g~I~iWDl~sg~~---i~~~~~~~~i~sl~f 690 (768)
+..|++||+.++......+..+....... |+++++.++++...+ +.|..+|+.++.. ...+.....+. .|
T Consensus 257 ~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~ 333 (693)
T 3iuj_A 257 SGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TV 333 (693)
T ss_dssp SCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EE
T ss_pred CCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EE
Confidence 24899999987754456666666666655 667777787777654 6799999988654 22333333343 88
Q ss_pred ecCCCEEEEEEcCC---eEEEEECCCceEeeecceeEEeecCCCceEEec-cCCCCeeEEEEeCCCCEEEEEECC----C
Q 004207 691 QPRLGRILAAAIEN---YISILDVETQVCRLKLQTLELWNMTENKTLTLS-AHDKLVSSLAASTVNGMVASASHD----K 762 (768)
Q Consensus 691 sp~~~~llags~Dg---~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~-~H~~~I~sla~spdg~~LaSgs~D----G 762 (768)
++++++|+....++ .|++||+.+... ..+. .+.+.+..+.+++++..|+....+ +
T Consensus 334 s~~g~~lv~~~~~~g~~~l~~~d~~g~~~-----------------~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~ 396 (693)
T 3iuj_A 334 HSGSGYLFAEYMVDATARVEQFDYEGKRV-----------------REVALPGLGSVSGFNGKHDDPALYFGFENYAQPP 396 (693)
T ss_dssp EEETTEEEEEEEETTEEEEEEECTTSCEE-----------------EEECCSSSSEEEECCCCTTCSCEEEEEECSSSCC
T ss_pred EEECCEEEEEEEECCeeEEEEEECCCCee-----------------EEeecCCCceEEeeecCCCCCEEEEEecCCCCCC
Confidence 99988888777544 567777664322 1111 233446666677777655544333 5
Q ss_pred cEEEeC
Q 004207 763 CVKIWK 768 (768)
Q Consensus 763 ~V~IWD 768 (768)
.|+.||
T Consensus 397 ~l~~~d 402 (693)
T 3iuj_A 397 TLYRFE 402 (693)
T ss_dssp EEEEEC
T ss_pred EEEEEE
Confidence 666654
No 216
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.99 E-value=1.6e-07 Score=100.66 Aligned_cols=192 Identities=11% Similarity=0.013 Sum_probs=125.5
Q ss_pred eEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEe
Q 004207 558 VESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 636 (768)
Q Consensus 558 I~sl~fSpdg~-~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~ 636 (768)
..+++|+|++. ++++...++.|.+||..+++... +. ....|.+++|+++++++++. .+ .|.+||.++++.. .+
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~--~~ 124 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTV-HA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLT--LH 124 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEE--EE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEE--EE
Confidence 56789999755 56666678899999998876542 32 34679999999998877654 44 4999999877642 22
Q ss_pred ecC-----CCCeEEEEEeCCCCeEEEEEeC-----CCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEE-cCCe
Q 004207 637 TGH-----STTVMSLDFHPSKEDLLCSCDN-----NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA-IENY 705 (768)
Q Consensus 637 ~~h-----~~~V~slafsp~g~~lLaSgs~-----Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags-~Dg~ 705 (768)
... ...+.+++++|+|..++.+.+. .+.|..+| +++.............++|+|++..++++. .++.
T Consensus 125 ~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~ 202 (326)
T 2ghs_A 125 AELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNR 202 (326)
T ss_dssp ECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCE
T ss_pred eeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCE
Confidence 211 2358899999998744433221 24566666 565544333334567899999998776665 4678
Q ss_pred EEEEECC--Cc-eEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 706 ISILDVE--TQ-VCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 706 I~IwD~~--t~-~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
|.+||+. ++ .... .+++ ..+......+..++++++|.++++...++.|.+||
T Consensus 203 I~~~d~~~~~Gl~~~~----~~~~-------~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d 257 (326)
T 2ghs_A 203 LMRVPLDARTGLPTGK----AEVF-------IDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYD 257 (326)
T ss_dssp EEEEEBCTTTCCBSSC----CEEE-------EECTTSSSEEEEEEECTTSCEEEEEETTTEEEEEC
T ss_pred EEEEEcccccCCcccC----ceEE-------EECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEEC
Confidence 9999975 43 2110 0111 01112334567888888888777766667788775
No 217
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.96 E-value=2.1e-08 Score=108.35 Aligned_cols=205 Identities=9% Similarity=0.071 Sum_probs=132.0
Q ss_pred CCeEEEEEcCCCCEEEEEe--CCCcEEEEECCCCeEEEEe-------ccCCCCEEEEEEcCCCCEEEEEeC-----CCcE
Q 004207 556 SKVESCHFSPDGKLLATGG--HDKKAVLWCTESFTVKSTL-------EEHTQWITDVRFSPSLSRLATSSA-----DRTV 621 (768)
Q Consensus 556 ~~I~sl~fSpdg~~LaSgs--~Dg~I~VWdl~t~~~~~tl-------~~h~~~V~sl~fspdg~~LaTgs~-----DgtI 621 (768)
..+..|+++++|+++++.. .++.++||.+.+++.. .+ ..|-..+.+|+|+++++++++-.. ++.|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 6789999999999988864 2343555555455433 22 124467999999999876655433 5789
Q ss_pred EEEECCCCCeeEEEeec------CCCCeEEEEEeCCCCeEEEEEe---CCCcEEEEECCCCeeEEEEec-----------
Q 004207 622 RVWDTENPDYSLRTFTG------HSTTVMSLDFHPSKEDLLCSCD---NNSEIRYWSINNGSCAGVFKC----------- 681 (768)
Q Consensus 622 rVWDl~t~~~~~~~~~~------h~~~V~slafsp~g~~lLaSgs---~Dg~I~iWDl~sg~~i~~~~~----------- 681 (768)
.+||+.+++. +..+.. +...+..+++++++..++++.. .++.|.+||+.+++..+.+..
T Consensus 96 ~~~d~~tg~~-~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~ 174 (343)
T 2qe8_A 96 VAWDTLNNQL-SRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDL 174 (343)
T ss_dssp EEEETTTTEE-EEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCC
T ss_pred EEEECCCCeE-EEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccce
Confidence 9999988764 333332 2245689999987666777766 678999999988776655421
Q ss_pred -------------------CCCeeEEEEecCCCEEEEEEcCC-eEEEEECCCceEeeecceeEEeecCCCceEEeccCCC
Q 004207 682 -------------------QSGATQMRFQPRLGRILAAAIEN-YISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDK 741 (768)
Q Consensus 682 -------------------~~~i~sl~fsp~~~~llags~Dg-~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~ 741 (768)
...+..++|+|++..|+++..++ .|..++....... .....+++ ..+...++..
T Consensus 175 ~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~-~~~~~~~~-----~~~~~~g~~g 248 (343)
T 2qe8_A 175 VIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNL-QLTDAELG-----SKIERYSEKP 248 (343)
T ss_dssp EETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCT-TCCHHHHH-----TTCEEEEECC
T ss_pred eECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCC-CCChhhhh-----cceEecccCC
Confidence 02357799999988888887665 4544443210000 00000000 0001113344
Q ss_pred CeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 742 LVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 742 ~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
....++++++|.++++...++.|.+||
T Consensus 249 ~pdgia~d~~G~l~va~~~~~~V~~~d 275 (343)
T 2qe8_A 249 ICDGISIDKDHNIYVGDLAHSAIGVIT 275 (343)
T ss_dssp SCSCEEECTTCCEEEEEGGGTEEEEEE
T ss_pred CCceEEECCCCCEEEEccCCCeEEEEE
Confidence 567789999998888888888898885
No 218
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.90 E-value=2.6e-07 Score=102.75 Aligned_cols=241 Identities=12% Similarity=0.109 Sum_probs=148.6
Q ss_pred CCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC------C
Q 004207 504 DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD------K 577 (768)
Q Consensus 504 ~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~D------g 577 (768)
....+++.|..++.|.+++...... +-++.+..+..+-.. +.....-..+.++|+| +++++..+ +
T Consensus 94 ~r~~l~v~~l~s~~I~viD~~t~p~-~p~~~k~ie~~~~~~-------~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g 164 (462)
T 2ece_A 94 ERRFLIVPGLRSSRIYIIDTKPNPR-EPKIIKVIEPEEVKK-------VSGYSRLHTVHCGPDA-IYISALGNEEGEGPG 164 (462)
T ss_dssp CSCEEEEEBTTTCCEEEEECCSCTT-SCEEEEEECHHHHHH-------HHCEEEEEEEEECSSC-EEEEEEEETTSCSCC
T ss_pred cCCEEEEccCCCCeEEEEECCCCCC-Cceeeeeechhhccc-------ccCCCcccceeECCCe-EEEEcCCCcCCCCCC
Confidence 3455666777888999997643321 111111111000000 0001124557788999 77776555 7
Q ss_pred cEEEEECCCCeEEEEeccCC---CCEEEEEEcCCCCEEEEEe-------------------CCCcEEEEECCCCCeeEEE
Q 004207 578 KAVLWCTESFTVKSTLEEHT---QWITDVRFSPSLSRLATSS-------------------ADRTVRVWDTENPDYSLRT 635 (768)
Q Consensus 578 ~I~VWdl~t~~~~~tl~~h~---~~V~sl~fspdg~~LaTgs-------------------~DgtIrVWDl~t~~~~~~~ 635 (768)
.|.++|.++++++.++.... ..-+.+.|+|+++.+++.. .+.+|.+||+.+++. +.+
T Consensus 165 ~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~-~~t 243 (462)
T 2ece_A 165 GILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKR-IHS 243 (462)
T ss_dssp EEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEE-EEE
T ss_pred eEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcE-eeE
Confidence 89999999999999986332 2245688999999988885 368999999998643 555
Q ss_pred eecC--CCCeEEEEE--eCCCCeEEEEEe-----CCCcEEEEECCCCee--EEEE--ec-----------------CCCe
Q 004207 636 FTGH--STTVMSLDF--HPSKEDLLCSCD-----NNSEIRYWSINNGSC--AGVF--KC-----------------QSGA 685 (768)
Q Consensus 636 ~~~h--~~~V~slaf--sp~g~~lLaSgs-----~Dg~I~iWDl~sg~~--i~~~--~~-----------------~~~i 685 (768)
+... ......|.| +|+++..++++. .+++|.+|....+.. +..+ .. ....
T Consensus 244 I~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~p 323 (462)
T 2ece_A 244 LTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLV 323 (462)
T ss_dssp EESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCC
T ss_pred EecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCce
Confidence 5432 123455656 999998888887 788898776654432 1111 10 2346
Q ss_pred eEEEEecCCCEEEEEEc-CCeEEEEECCCceEeeecceeEEeecCCCceEEeccC------CCCeeEEEEeCCCCEEEEE
Q 004207 686 TQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAH------DKLVSSLAASTVNGMVASA 758 (768)
Q Consensus 686 ~sl~fsp~~~~llags~-Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H------~~~I~sla~spdg~~LaSg 758 (768)
..+.+++++++|+++.. .+.|.+||+...........+.+ +-......| .+....++++|||++|+++
T Consensus 324 a~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~t-----GG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVa 398 (462)
T 2ece_A 324 TDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKL-----GGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVT 398 (462)
T ss_dssp CCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEEC-----BTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEE
T ss_pred eEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEe-----CCeeccccccccccCCCCCCEEEEcCCCCEEEEE
Confidence 78999999999988875 68999999863211111111111 000000001 1235789999999999988
Q ss_pred E
Q 004207 759 S 759 (768)
Q Consensus 759 s 759 (768)
.
T Consensus 399 N 399 (462)
T 2ece_A 399 N 399 (462)
T ss_dssp C
T ss_pred c
Confidence 7
No 219
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.88 E-value=2.5e-10 Score=125.25 Aligned_cols=144 Identities=15% Similarity=0.081 Sum_probs=81.7
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCC-CeE
Q 004207 566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHST-TVM 644 (768)
Q Consensus 566 dg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~-~V~ 644 (768)
++..|++++.|+.|+.||..+++.+..+.. +.+.+..+..++..+++++.|+.|+.||.++++. +..+..+.. .+.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~-~w~~~~~~~~~~~ 84 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEG-LTKLPFTIPELVQ 84 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CC-SEECSCCHHHHHT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCce-eeeeeccCccccc
Confidence 678899999999999999999999988876 4565666666777888888999999999988765 333322211 010
Q ss_pred -EEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEe
Q 004207 645 -SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCR 717 (768)
Q Consensus 645 -slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~ 717 (768)
+..+. .+. .+++++.|+.|+.||.++|+.+..+..+.. ..++|+++.+++++.|+.|+.||.++++..
T Consensus 85 ~sp~~~-~~~-~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~---~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~ 153 (369)
T 2hz6_A 85 ASPCRS-SDG-ILYMGKKQDIWYVIDLLTGEKQQTLSSAFA---DSLSPSTSLLYLGRTEYTITMYDTKTRELR 153 (369)
T ss_dssp TCSCC-------CCCCEEEEEEEEECCC-------------------------EEEEEEEEEEECCCSSSSSCC
T ss_pred cCceEe-cCC-EEEEEeCCCEEEEEECCCCcEEEEecCCCc---ccccccCCEEEEEecCCEEEEEECCCCCEE
Confidence 01111 223 455777899999999999999887765432 345667888999999999999999887654
No 220
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.86 E-value=6.9e-07 Score=98.04 Aligned_cols=146 Identities=12% Similarity=0.001 Sum_probs=105.1
Q ss_pred EcCCCCEEEEEeC--CC---cEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEe----------CCCcEEEEECC
Q 004207 563 FSPDGKLLATGGH--DK---KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS----------ADRTVRVWDTE 627 (768)
Q Consensus 563 fSpdg~~LaSgs~--Dg---~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs----------~DgtIrVWDl~ 627 (768)
..|++++++++.. .. +|.+||..+++.+.++.....+ .++|+||+++|+++. .++.|.+||..
T Consensus 28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~ 105 (373)
T 2mad_H 28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPV 105 (373)
T ss_pred CCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECC
Confidence 3467777666643 22 8899999999998888654444 999999999999886 36789999998
Q ss_pred CCCeeEEEeecC-------CCCeEEEEEeCCCCeEEEEEeC-CCcEEEEECCCCeeEEE-EecCCCeeEEEEecCCC-EE
Q 004207 628 NPDYSLRTFTGH-------STTVMSLDFHPSKEDLLCSCDN-NSEIRYWSINNGSCAGV-FKCQSGATQMRFQPRLG-RI 697 (768)
Q Consensus 628 t~~~~~~~~~~h-------~~~V~slafsp~g~~lLaSgs~-Dg~I~iWDl~sg~~i~~-~~~~~~i~sl~fsp~~~-~l 697 (768)
+.+. +..+.-. ......+.|+|+|++++++... ++.|.++| .+++.+.. +..... +.+.|.+. .+
T Consensus 106 t~~~-~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~---~~~~~~~~~~~ 180 (373)
T 2mad_H 106 TFLP-IADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTC---YHIHPGAPSTF 180 (373)
T ss_pred CCcE-EEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCce---EEEEeCCCceE
Confidence 7664 3333211 1235689999999988876644 57899999 99998887 665433 44455543 45
Q ss_pred EEEEcCCeEEEEECCCceE
Q 004207 698 LAAAIENYISILDVETQVC 716 (768)
Q Consensus 698 lags~Dg~I~IwD~~t~~~ 716 (768)
++.+.|+.+.++|. ++..
T Consensus 181 ~~~~~dg~~~~vd~-~g~~ 198 (373)
T 2mad_H 181 YLLCAQGGLAKTDH-AGGA 198 (373)
T ss_pred EEEcCCCCEEEEEC-CCcE
Confidence 66677888888888 5543
No 221
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.86 E-value=1.3e-07 Score=103.97 Aligned_cols=148 Identities=11% Similarity=0.021 Sum_probs=114.1
Q ss_pred EEEcCCCCEEEEEeC-----CCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEe----------CCCcEEEEE
Q 004207 561 CHFSPDGKLLATGGH-----DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS----------ADRTVRVWD 625 (768)
Q Consensus 561 l~fSpdg~~LaSgs~-----Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs----------~DgtIrVWD 625 (768)
....|+++.+++... ++.|.++|..+++.+.++.....+ . ++++||+++|++++ .++.|.+||
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD 115 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFD 115 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence 345689998887765 679999999999999988765555 4 99999999988876 367899999
Q ss_pred CCCCCeeEEEee-cC------CCCeEEEEEeCCCCeEEEEEeC-CCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEE
Q 004207 626 TENPDYSLRTFT-GH------STTVMSLDFHPSKEDLLCSCDN-NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRI 697 (768)
Q Consensus 626 l~t~~~~~~~~~-~h------~~~V~slafsp~g~~lLaSgs~-Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~l 697 (768)
..+.+. +..+. +. ......+.|+|+|++++++... ++.|.++|+.+++.+.++...+. ...+......+
T Consensus 116 ~~t~~v-~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~--~~~~P~g~~~~ 192 (386)
T 3sjl_D 116 PVTLLP-TADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC--YHIFPTAPDTF 192 (386)
T ss_dssp TTTCCE-EEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE--EEEEEEETTEE
T ss_pred CCCCeE-EEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc--ceeecCCCcee
Confidence 999875 44332 21 1246679999999988877643 78999999999999999875442 23343344567
Q ss_pred EEEEcCCeEEEEECCC
Q 004207 698 LAAAIENYISILDVET 713 (768)
Q Consensus 698 lags~Dg~I~IwD~~t 713 (768)
++.+.||.+.++++.+
T Consensus 193 ~~~~~DG~~~~v~~~~ 208 (386)
T 3sjl_D 193 FMHCRDGSLAKVAFGT 208 (386)
T ss_dssp EEEETTSCEEEEECCS
T ss_pred EEECCCCCEEEEECCC
Confidence 8889999999999976
No 222
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.84 E-value=1.5e-07 Score=101.63 Aligned_cols=194 Identities=10% Similarity=0.031 Sum_probs=127.4
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeC-----CCcEEEEECCCCeEEEEeccC------CCCEEEEEEcCCCCEE-EEEe---C
Q 004207 553 ASTSKVESCHFSPDGKLLATGGH-----DKKAVLWCTESFTVKSTLEEH------TQWITDVRFSPSLSRL-ATSS---A 617 (768)
Q Consensus 553 ~H~~~I~sl~fSpdg~~LaSgs~-----Dg~I~VWdl~t~~~~~tl~~h------~~~V~sl~fspdg~~L-aTgs---~ 617 (768)
.|-..+.+++|+++++++++-.. ++.|.+||+.+++.+.++..+ ...+..+++++++..+ ++.. .
T Consensus 64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~ 143 (343)
T 2qe8_A 64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDD 143 (343)
T ss_dssp CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGG
T ss_pred cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCC
Confidence 45678999999999886665543 578999999999877766432 2356899999865454 5544 5
Q ss_pred CCcEEEEECCCCCeeEEEeecCC-----------------------------CCeEEEEEeCCCCeEEEEEeCCCcEEEE
Q 004207 618 DRTVRVWDTENPDYSLRTFTGHS-----------------------------TTVMSLDFHPSKEDLLCSCDNNSEIRYW 668 (768)
Q Consensus 618 DgtIrVWDl~t~~~~~~~~~~h~-----------------------------~~V~slafsp~g~~lLaSgs~Dg~I~iW 668 (768)
++.|.+||+.+++. .+.+.+|. ..+..|+|+|+++.++++......|..+
T Consensus 144 ~~~i~v~d~~~g~~-~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~ 222 (343)
T 2qe8_A 144 KAALIRVDLQTGLA-ARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRI 222 (343)
T ss_dssp GCEEEEEETTTCCE-EEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEE
T ss_pred CCeEEEEECCCCCE-EEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEE
Confidence 78999999987653 33332221 2368899999988676555444466555
Q ss_pred ECC---CCe--------eEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEec
Q 004207 669 SIN---NGS--------CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLS 737 (768)
Q Consensus 669 Dl~---sg~--------~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~ 737 (768)
+.. .+. .+..+........+++++++..+++...++.|.+||..++... .+. . .
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~------~~~--------~-~ 287 (343)
T 2qe8_A 223 KSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYK------LLV--------T-D 287 (343)
T ss_dssp EHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEE------EEE--------E-C
T ss_pred EHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEE------EEE--------E-C
Confidence 532 111 0111222234567999999877777777889999998444321 010 0 1
Q ss_pred cCCCCeeEEEEeCCCCEEEEEECCC
Q 004207 738 AHDKLVSSLAASTVNGMVASASHDK 762 (768)
Q Consensus 738 ~H~~~I~sla~spdg~~LaSgs~DG 762 (768)
.+-..+++|+|.+++.++++.+..+
T Consensus 288 ~~~~~p~~va~~~~g~l~v~~~~~~ 312 (343)
T 2qe8_A 288 EKLSWTDSFNFGSDGYLYFDCNQLH 312 (343)
T ss_dssp GGGSCEEEEEECTTSCEEEEECCGG
T ss_pred CceecCCeeEECCCCcEEEEeCccc
Confidence 1234588999999988888776543
No 223
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.79 E-value=7.1e-08 Score=105.77 Aligned_cols=194 Identities=9% Similarity=0.000 Sum_probs=118.4
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEe----------CCCcEEEEECCCCeEEEEeccC-------CCCEEEEEEcCCCC
Q 004207 548 FQLIPASTSKVESCHFSPDGKLLATGG----------HDKKAVLWCTESFTVKSTLEEH-------TQWITDVRFSPSLS 610 (768)
Q Consensus 548 ~~~l~~H~~~I~sl~fSpdg~~LaSgs----------~Dg~I~VWdl~t~~~~~tl~~h-------~~~V~sl~fspdg~ 610 (768)
+..+.....+ .+.|+||+++++++. .++.|.+||+.+++.+.++..+ ......++|+||++
T Consensus 59 ~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk 136 (368)
T 1mda_H 59 LGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSA 136 (368)
T ss_dssp EEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSS
T ss_pred EEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCC
Confidence 4444444445 799999999888886 3688999999999999988643 12356899999999
Q ss_pred EEEEEeC--CCcEEE--EECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCC------------------------
Q 004207 611 RLATSSA--DRTVRV--WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN------------------------ 662 (768)
Q Consensus 611 ~LaTgs~--DgtIrV--WDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~D------------------------ 662 (768)
+|+++.. +..|.+ +|+.+ +..+.- .+. +.+.|++...+++.+.|
T Consensus 137 ~lyVan~~~~~~v~V~~iD~~t----v~~i~v-~~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~ 208 (368)
T 1mda_H 137 CLLFFLFGSSAAAGLSVPGASD----DQLTKS-ASC---FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTG 208 (368)
T ss_dssp CEEEEECSSSCEEEEEETTTEE----EEEEEC-SSC---CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCT
T ss_pred EEEEEccCCCCeEEEEEEchhh----ceEEEC-CCc---eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeee
Confidence 9999875 357888 98865 111110 000 01112222222222222
Q ss_pred ----------------------CcEEEEECCCC--eeEEEEec-----------CCCeeEEEEecCCCEEEEEEc-C---
Q 004207 663 ----------------------SEIRYWSINNG--SCAGVFKC-----------QSGATQMRFQPRLGRILAAAI-E--- 703 (768)
Q Consensus 663 ----------------------g~I~iWDl~sg--~~i~~~~~-----------~~~i~sl~fsp~~~~llags~-D--- 703 (768)
+.|.+.|+... +.+..+.. ......+.|+|++++++++.. .
T Consensus 209 ~i~vg~~P~~~~~~~~~~~vs~~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~ 288 (368)
T 1mda_H 209 AQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRS 288 (368)
T ss_dssp TSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSC
T ss_pred eeeCCCCccccccCCEEEEEcCCEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCc
Confidence 45555555432 12221211 011122678888888777643 2
Q ss_pred -----CeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCC-EEEEEE-CCCcEEEeC
Q 004207 704 -----NYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVASAS-HDKCVKIWK 768 (768)
Q Consensus 704 -----g~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~-~LaSgs-~DG~V~IWD 768 (768)
+.+.++|+.+.+.+..+. + + .....|+|+++++ ++++.. .++.|.|+|
T Consensus 289 ~~~~~~~~~ViD~~t~~vv~~i~--------------v-g--~~p~gi~~s~Dg~~l~va~~~~~~~VsVID 343 (368)
T 1mda_H 289 CLAAAENTSSVTASVGQTSGPIS--------------N-G--HDSDAIIAAQDGASDNYANSAGTEVLDIYD 343 (368)
T ss_dssp TTSCEEEEEEEESSSCCEEECCE--------------E-E--EEECEEEECCSSSCEEEEEETTTTEEEEEE
T ss_pred ccccCCCEEEEECCCCeEEEEEE--------------C-C--CCcceEEECCCCCEEEEEccCCCCeEEEEE
Confidence 356688888776544332 1 1 1478999999997 566666 599999986
No 224
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.77 E-value=1.9e-09 Score=118.20 Aligned_cols=184 Identities=10% Similarity=-0.023 Sum_probs=101.4
Q ss_pred CCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004207 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (768)
Q Consensus 505 ~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl 584 (768)
.+..|++++.|+.|..|+...+. ....+ .. +.+.+..+..++..+++++.|+.|+.||.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~----------------~~W~~---~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~ 66 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGS----------------IKWTL---KE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGS 66 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCC----------------EEEEE---EC--CCSCCCC-----CCEEECTTTCCEEEC--
T ss_pred eCCEEEEEcCCCEEEEEECCCCC----------------EEEEe---cC--CCceecceEcCCCEEEEeCCCCEEEEEEC
Confidence 46788899999999999654432 11222 12 34445555567878888889999999999
Q ss_pred CCCeEEEEeccCCCC-EE-EEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCC
Q 004207 585 ESFTVKSTLEEHTQW-IT-DVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 662 (768)
Q Consensus 585 ~t~~~~~tl~~h~~~-V~-sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~D 662 (768)
++++.+..+..+... +. +..+. ++..|++++.|+.|+.||.++++. +..+..+. .+.++|++. .+++++.|
T Consensus 67 ~tG~~~w~~~~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~-~w~~~~~~----~~~~~p~~~-~v~~~~~d 139 (369)
T 2hz6_A 67 KNNEGLTKLPFTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEK-QQTLSSAF----ADSLSPSTS-LLYLGRTE 139 (369)
T ss_dssp ---CCSEECSCCHHHHHTTCSCC------CCCCEEEEEEEEECCC----------------------------EEEEEEE
T ss_pred CCCceeeeeeccCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcE-EEEecCCC----cccccccCC-EEEEEecC
Confidence 999887776543211 10 01111 345778888999999999998875 33333332 234456555 55577789
Q ss_pred CcEEEEECCCCeeEEEEecCCCeeEEEEecCC---CEEEEEEcCCeEEEEECCCceEe
Q 004207 663 SEIRYWSINNGSCAGVFKCQSGATQMRFQPRL---GRILAAAIENYISILDVETQVCR 717 (768)
Q Consensus 663 g~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~---~~llags~Dg~I~IwD~~t~~~~ 717 (768)
+.|+.||.++++.+..+.... ....++..+. +.+++++.++.|+.||..+++..
T Consensus 140 g~v~a~d~~tG~~~W~~~~~~-~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~ 196 (369)
T 2hz6_A 140 YTITMYDTKTRELRWNATYFD-YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVL 196 (369)
T ss_dssp EEEECCCSSSSSCCCEEEEEE-ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEE
T ss_pred CEEEEEECCCCCEEEeEeccc-ccCccccCCccccceEEEECCCCEEEEEECCCCcEE
Confidence 999999999998876665321 1223333322 56888899999999999887653
No 225
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.71 E-value=1.9e-06 Score=89.45 Aligned_cols=199 Identities=14% Similarity=0.110 Sum_probs=130.0
Q ss_pred eEEEEecCCCCC--eEEEEEcCCCCEEEEEeCCC--cEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEe-CCCc
Q 004207 546 TEFQLIPASTSK--VESCHFSPDGKLLATGGHDK--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRT 620 (768)
Q Consensus 546 ~~~~~l~~H~~~--I~sl~fSpdg~~LaSgs~Dg--~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs-~Dgt 620 (768)
+-+..+ .|... .-.+.|+ ++.++.+.+.+| .|+++|+++++.+..+.... .+......+++..|+... .++.
T Consensus 32 ~vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~ 108 (262)
T 3nol_A 32 QIVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGL 108 (262)
T ss_dssp EEEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSE
T ss_pred EEEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCE
Confidence 334444 45443 4788998 677777777766 89999999999998886543 333322223345555554 4889
Q ss_pred EEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecC------CCeeEEEEecCC
Q 004207 621 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ------SGATQMRFQPRL 694 (768)
Q Consensus 621 IrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~------~~i~sl~fsp~~ 694 (768)
+.+||.++.+. +..+... ..-..++ +++..++++- .++.|.++|..+.+.+..+... ..+..+.|. +
T Consensus 109 v~v~D~~t~~~-~~ti~~~-~eG~glt--~dg~~L~~Sd-Gs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~- 181 (262)
T 3nol_A 109 GFVWNIRNLRQ-VRSFNYD-GEGWGLT--HNDQYLIMSD-GTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-D- 181 (262)
T ss_dssp EEEEETTTCCE-EEEEECS-SCCCCEE--ECSSCEEECC-SSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-T-
T ss_pred EEEEECccCcE-EEEEECC-CCceEEe--cCCCEEEEEC-CCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-C-
Confidence 99999998876 5555432 2223344 5666666554 4788999999999988887752 234457776 4
Q ss_pred CEEEEEE-cCCeEEEEECCCceEeeecceeEEeecCCCceEE--eccCCCCeeEEEEeCCCCEEEEEEC
Q 004207 695 GRILAAA-IENYISILDVETQVCRLKLQTLELWNMTENKTLT--LSAHDKLVSSLAASTVNGMVASASH 760 (768)
Q Consensus 695 ~~llags-~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~--l~~H~~~I~sla~spdg~~LaSgs~ 760 (768)
+.+++.. .++.|.+.|..+++.... +++....... ...-....+.|||+|+++.|++.+.
T Consensus 182 G~lyan~w~~~~I~vIDp~tG~V~~~------Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 182 GEIFANVWQTNKIVRIDPETGKVTGI------IDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp TEEEEEETTSSEEEEECTTTCBEEEE------EECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred CEEEEEEccCCeEEEEECCCCcEEEE------EECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 4666666 578999999999887443 3433211100 1122346789999999887777764
No 226
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.69 E-value=1.1e-05 Score=87.32 Aligned_cols=193 Identities=11% Similarity=0.057 Sum_probs=121.9
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCe--
Q 004207 566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV-- 643 (768)
Q Consensus 566 dg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V-- 643 (768)
++..|++++.++.|..+|.++++.+................ +..+++++.++.|..+|.++++. +..+.......
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~-~W~~~~~~~~~~~ 178 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAV-KWTVNLDMPSLSL 178 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCE-EEEEECCC-----
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcE-EEEEeCCCCceee
Confidence 46678888899999999999999987775543222222222 45788888999999999998875 33332211110
Q ss_pred ---EEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCC-----------e-eEEEEecCCCEEEEEEcCCeEEE
Q 004207 644 ---MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-----------A-TQMRFQPRLGRILAAAIENYISI 708 (768)
Q Consensus 644 ---~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~-----------i-~sl~fsp~~~~llags~Dg~I~I 708 (768)
...... + . .++++..++.|..+|..+++.+..+..... + ....+ .++.+++++.++.|..
T Consensus 179 ~~~~~~~~~-~-~-~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~v~~~~~~g~l~~ 253 (376)
T 3q7m_A 179 RGESAPTTA-F-G-AAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV--VNGVVFALAYNGNLTA 253 (376)
T ss_dssp CCCCCCEEE-T-T-EEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE--ETTEEEEECTTSCEEE
T ss_pred cCCCCcEEE-C-C-EEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE--ECCEEEEEecCcEEEE
Confidence 122222 2 3 455677789999999999998877764321 1 11111 2467888888899999
Q ss_pred EECCCceEeeecc---------------------eeEEeecCCCceEEecc--CCCCeeEEEEeCCCCEEEEEECCCcEE
Q 004207 709 LDVETQVCRLKLQ---------------------TLELWNMTENKTLTLSA--HDKLVSSLAASTVNGMVASASHDKCVK 765 (768)
Q Consensus 709 wD~~t~~~~~~~~---------------------~I~iwd~~~~~~~~l~~--H~~~I~sla~spdg~~LaSgs~DG~V~ 765 (768)
+|..+++...... .+..+|..+++..-... ....+...... +..|++++.+|.|.
T Consensus 254 ~d~~tG~~~w~~~~~~~~~~~~~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~--~~~l~v~~~~g~l~ 331 (376)
T 3q7m_A 254 LDLRSGQIMWKRELGSVNDFIVDGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLY--NGNLVVGDSEGYLH 331 (376)
T ss_dssp EETTTCCEEEEECCCCEEEEEEETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEE--TTEEEEECTTSEEE
T ss_pred EECCCCcEEeeccCCCCCCceEECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEE--CCEEEEEeCCCeEE
Confidence 9998775543321 45566666666542221 11223333333 56788888899888
Q ss_pred EeC
Q 004207 766 IWK 768 (768)
Q Consensus 766 IWD 768 (768)
+||
T Consensus 332 ~~d 334 (376)
T 3q7m_A 332 WIN 334 (376)
T ss_dssp EEE
T ss_pred EEE
Confidence 875
No 227
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.68 E-value=7.8e-07 Score=105.36 Aligned_cols=193 Identities=12% Similarity=0.105 Sum_probs=128.2
Q ss_pred CCcEEEEECCCCeEEEEeccCCCC--------------------------------EEEEEEcCCCCEEEEEeCCC----
Q 004207 576 DKKAVLWCTESFTVKSTLEEHTQW--------------------------------ITDVRFSPSLSRLATSSADR---- 619 (768)
Q Consensus 576 Dg~I~VWdl~t~~~~~tl~~h~~~--------------------------------V~sl~fspdg~~LaTgs~Dg---- 619 (768)
++.|+.||..+++.+..+...... ...++++|++.+|+.++.++
T Consensus 189 ~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~ 268 (677)
T 1kb0_A 189 RGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWS 268 (677)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSC
T ss_pred CCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCcccc
Confidence 789999999999999877542211 12578889888888887664
Q ss_pred ---------------cEEEEECCCCCeeEEEeec-CC-------CCeEEEEEeCCCC--eEEEEEeCCCcEEEEECCCCe
Q 004207 620 ---------------TVRVWDTENPDYSLRTFTG-HS-------TTVMSLDFHPSKE--DLLCSCDNNSEIRYWSINNGS 674 (768)
Q Consensus 620 ---------------tIrVWDl~t~~~~~~~~~~-h~-------~~V~slafsp~g~--~lLaSgs~Dg~I~iWDl~sg~ 674 (768)
+|..+|.++++..-..-.. |. .....+....+|+ .++++++.+|.|+++|.++|+
T Consensus 269 ~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~ 348 (677)
T 1kb0_A 269 HKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGK 348 (677)
T ss_dssp HHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred CCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCC
Confidence 5999999998863222221 21 1223334444553 577789999999999999999
Q ss_pred eEEEEecCC-----------C-------------------------eeEEEEecCCCEEEEEEcCCeEEEEECCCce---
Q 004207 675 CAGVFKCQS-----------G-------------------------ATQMRFQPRLGRILAAAIENYISILDVETQV--- 715 (768)
Q Consensus 675 ~i~~~~~~~-----------~-------------------------i~sl~fsp~~~~llags~Dg~I~IwD~~t~~--- 715 (768)
.+..+.... . ...++|+|+.+.+++...+-...++......
T Consensus 349 ~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~ 428 (677)
T 1kb0_A 349 FISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQ 428 (677)
T ss_dssp EEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTC
T ss_pred EeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccc
Confidence 987765321 0 0146889998888887765444444322000
Q ss_pred ----------------E-------eeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 716 ----------------C-------RLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 716 ----------------~-------~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
. ......|..||+.+++.+-...+...+....+..++.++++++.||.|++||
T Consensus 429 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D 504 (677)
T 1kb0_A 429 AGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYH 504 (677)
T ss_dssp CCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred ccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEEECCCCcEEEEE
Confidence 0 0011357778888777664444444555566677788999999999999986
No 228
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.65 E-value=9.5e-07 Score=98.57 Aligned_cols=146 Identities=10% Similarity=0.021 Sum_probs=108.4
Q ss_pred CCCCEEEEEeCC-----CcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEe----------CCCcEEEEECCCC
Q 004207 565 PDGKLLATGGHD-----KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS----------ADRTVRVWDTENP 629 (768)
Q Consensus 565 pdg~~LaSgs~D-----g~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs----------~DgtIrVWDl~t~ 629 (768)
++++.++++... +.|.++|..+++.+.++.....+ .++++||+++|+++. .++.|.++|..+.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 466766655442 69999999999999998765555 899999999888886 3678999999988
Q ss_pred CeeEEEee-c------CCCCeEEEEEeCCCCeEEEEEeC-CCcEEEEECCCCeeEEEEecCCCeeEEEEecCC-CEEEEE
Q 004207 630 DYSLRTFT-G------HSTTVMSLDFHPSKEDLLCSCDN-NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRL-GRILAA 700 (768)
Q Consensus 630 ~~~~~~~~-~------h~~~V~slafsp~g~~lLaSgs~-Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~-~~llag 700 (768)
+. +..+. + .......+.|+|+|++++++... ++.|.++|+.+.+.+..+..... ....|++ ..+++.
T Consensus 160 ~v-v~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~---~~~~p~g~~~~v~~ 235 (426)
T 3c75_H 160 LP-IADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC---YHIFPASPTVFYMN 235 (426)
T ss_dssp CE-EEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEEETTEEEEE
T ss_pred cE-EEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc---eeeccCCCcEEEEE
Confidence 75 43332 2 12345678999999988866543 68999999999999998886432 2334433 456777
Q ss_pred EcCCeEEEEECCCceE
Q 004207 701 AIENYISILDVETQVC 716 (768)
Q Consensus 701 s~Dg~I~IwD~~t~~~ 716 (768)
+.||.+.+.+..+++.
T Consensus 236 ~~dG~~~~V~~~~~~v 251 (426)
T 3c75_H 236 CRDGSLARVDFADGET 251 (426)
T ss_dssp ETTSSEEEEECCTTCC
T ss_pred cCCCCEEEEECCCCcE
Confidence 8899888888855443
No 229
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.65 E-value=7.7e-06 Score=85.40 Aligned_cols=207 Identities=7% Similarity=-0.016 Sum_probs=132.6
Q ss_pred eeEEEEecCCCC--CeEEEEEcCCCCEEEEEeC--CCcEEEEECCCCeEEEEeccCC-CCEEEEEEcCCCCEEEEE-eCC
Q 004207 545 FTEFQLIPASTS--KVESCHFSPDGKLLATGGH--DKKAVLWCTESFTVKSTLEEHT-QWITDVRFSPSLSRLATS-SAD 618 (768)
Q Consensus 545 ~~~~~~l~~H~~--~I~sl~fSpdg~~LaSgs~--Dg~I~VWdl~t~~~~~tl~~h~-~~V~sl~fspdg~~LaTg-s~D 618 (768)
++.+..+ .|.. ....+.|++|+.++++.+. ++.|.++|+.+++.+..+.... .....+++. +..|+.+ -.+
T Consensus 9 ~~vv~~~-p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~ 85 (266)
T 2iwa_A 9 VEVLNEF-PHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLK 85 (266)
T ss_dssp EEEEEEE-ECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTC
T ss_pred ceEEEEE-ECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecC
Confidence 3344444 3443 3679999998755555543 5799999999999998875322 223455665 4455544 457
Q ss_pred CcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCC------CeeEEEEec
Q 004207 619 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS------GATQMRFQP 692 (768)
Q Consensus 619 gtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~------~i~sl~fsp 692 (768)
+.|.++|..+.+. +..+...... ...++++++.++++. .++.|.++|..+.+.+..+.... .+..+.|.
T Consensus 86 ~~v~viD~~t~~v-~~~i~~g~~~--g~glt~Dg~~l~vs~-gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~- 160 (266)
T 2iwa_A 86 NIGFIYDRRTLSN-IKNFTHQMKD--GWGLATDGKILYGSD-GTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI- 160 (266)
T ss_dssp SEEEEEETTTTEE-EEEEECCSSS--CCEEEECSSSEEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-
T ss_pred CEEEEEECCCCcE-EEEEECCCCC--eEEEEECCCEEEEEC-CCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-
Confidence 8999999998765 5555422122 233556778777655 58899999999999888877532 35678888
Q ss_pred CCCEEEEEE-cCCeEEEEECCCceEeeecceeEEeecCCCce---EEeccCCCCeeEEEEeCCCCEEEEEE-CCCcEEE
Q 004207 693 RLGRILAAA-IENYISILDVETQVCRLKLQTLELWNMTENKT---LTLSAHDKLVSSLAASTVNGMVASAS-HDKCVKI 766 (768)
Q Consensus 693 ~~~~llags-~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~---~~l~~H~~~I~sla~spdg~~LaSgs-~DG~V~I 766 (768)
++ .+++.. .++.|.+.|..+++....+. +..... ..-..-....+.|+|+|+++.|++++ ..+.|.+
T Consensus 161 dg-~lyvn~~~~~~V~vID~~tg~V~~~I~------~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~ 232 (266)
T 2iwa_A 161 NG-EVWANIWQTDCIARISAKDGTLLGWIL------LPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFE 232 (266)
T ss_dssp TT-EEEEEETTSSEEEEEETTTCCEEEEEE------CHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEE
T ss_pred CC-EEEEecCCCCeEEEEECCCCcEEEEEE------CCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEE
Confidence 54 666665 57899999999987654332 110000 00001124578999999987555544 5666654
No 230
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.64 E-value=1.8e-06 Score=95.97 Aligned_cols=197 Identities=12% Similarity=0.113 Sum_probs=133.0
Q ss_pred CCCCEEEE-EeCCCcEEEEECCCC----eEEEEec-------cCCCCEEEEEEcCCCCEEEEEeCC------CcEEEEEC
Q 004207 565 PDGKLLAT-GGHDKKAVLWCTESF----TVKSTLE-------EHTQWITDVRFSPSLSRLATSSAD------RTVRVWDT 626 (768)
Q Consensus 565 pdg~~LaS-gs~Dg~I~VWdl~t~----~~~~tl~-------~h~~~V~sl~fspdg~~LaTgs~D------gtIrVWDl 626 (768)
.++++|++ +..+++|+|+|+.+. +...+++ ........+...|++ +++++..+ +.|.++|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 77887654 566789999999765 6777773 111245567888999 77776665 78999999
Q ss_pred CCCCeeEEEeecCC---CCeEEEEEeCCCCeEEEEEe-------------------CCCcEEEEECCCCeeEEEEecC--
Q 004207 627 ENPDYSLRTFTGHS---TTVMSLDFHPSKEDLLCSCD-------------------NNSEIRYWSINNGSCAGVFKCQ-- 682 (768)
Q Consensus 627 ~t~~~~~~~~~~h~---~~V~slafsp~g~~lLaSgs-------------------~Dg~I~iWDl~sg~~i~~~~~~-- 682 (768)
++.+. +..+.... ..-+.+.|+|+++.++ +.. .+.+|.+||+.+++.+.++...
T Consensus 172 ~T~~v-~~~~~~~~~~~~~~Yd~~~~p~~~~mv-sS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~ 249 (462)
T 2ece_A 172 YSFEP-LGKWEIDRGDQYLAYDFWWNLPNEVLV-SSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEE 249 (462)
T ss_dssp TTCCE-EEECCSBCTTCCCCCCEEEETTTTEEE-ECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTT
T ss_pred CCCeE-EEEEccCCCCccccceEEECCCCCEEE-EccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCC
Confidence 98775 55554221 2245688899988555 442 3689999999999888888864
Q ss_pred -CCeeEEEE--ecCCCEEEEEEc------CCeEEEEECCCceEeeecceeEEeecCCCceEE-e-------ccCCCCeeE
Q 004207 683 -SGATQMRF--QPRLGRILAAAI------ENYISILDVETQVCRLKLQTLELWNMTENKTLT-L-------SAHDKLVSS 745 (768)
Q Consensus 683 -~~i~sl~f--sp~~~~llags~------Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~-l-------~~H~~~I~s 745 (768)
.....+.| +|++.++++++. ++.|.+|....+.. ..+.+.|+...+... + .+-...+..
T Consensus 250 g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~----~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~ 325 (462)
T 2ece_A 250 NRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKW----NAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTD 325 (462)
T ss_dssp EEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEE----EEEEEEEECCEECCSSCCGGGGGGTEECCCCCC
T ss_pred CCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCce----eEEEEEeCCCccccccccccccccccCCCceeE
Confidence 23445555 999999887774 56888777654322 223334433322111 1 011245788
Q ss_pred EEEeCCCCEEEEEEC-CCcEEEeC
Q 004207 746 LAASTVNGMVASASH-DKCVKIWK 768 (768)
Q Consensus 746 la~spdg~~LaSgs~-DG~V~IWD 768 (768)
|.+++|+++|+++.. .+.|.+||
T Consensus 326 I~lS~DGrfLYVSnrg~d~Vavfd 349 (462)
T 2ece_A 326 IDISLDDKFLYLSLWGIGEVRQYD 349 (462)
T ss_dssp EEECTTSCEEEEEETTTTEEEEEE
T ss_pred EEECCCCCEEEEEeCCCCEEEEEE
Confidence 999999999988875 67888875
No 231
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.64 E-value=2.1e-06 Score=101.91 Aligned_cols=192 Identities=10% Similarity=0.067 Sum_probs=127.8
Q ss_pred CCcEEEEECCCCeEEEEeccC--C-----------------------------CCEEEEEEcCCCCEEEEEeCCCc----
Q 004207 576 DKKAVLWCTESFTVKSTLEEH--T-----------------------------QWITDVRFSPSLSRLATSSADRT---- 620 (768)
Q Consensus 576 Dg~I~VWdl~t~~~~~tl~~h--~-----------------------------~~V~sl~fspdg~~LaTgs~Dgt---- 620 (768)
++.|+.||.++++.+..+... . .....++++|+..+|+.++.++.
T Consensus 182 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~ 261 (689)
T 1yiq_A 182 RGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDP 261 (689)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCH
T ss_pred CCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCcccc
Confidence 789999999999998876421 0 01125788888889999888764
Q ss_pred ---------------EEEEECCCCCeeEEEeec--CC-------CCeEEEEEeCCCC--eEEEEEeCCCcEEEEECCCCe
Q 004207 621 ---------------VRVWDTENPDYSLRTFTG--HS-------TTVMSLDFHPSKE--DLLCSCDNNSEIRYWSINNGS 674 (768)
Q Consensus 621 ---------------IrVWDl~t~~~~~~~~~~--h~-------~~V~slafsp~g~--~lLaSgs~Dg~I~iWDl~sg~ 674 (768)
|..||.++++. +-.+.. |. ..+.......+|. .+++.++.+|.|+++|.++|+
T Consensus 262 ~~~~~~~gd~~y~~~v~AlD~~TG~~-~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~ 340 (689)
T 1yiq_A 262 KWRSQAKGDNLFLSSIVAVNADTGEY-VWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGE 340 (689)
T ss_dssp HHHHTTCSCCTTTTEEEEEETTTCCE-EEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred CCCCCCCCCceeeeeEEEEEccCCce-eEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCC
Confidence 99999999886 333322 21 1222223323443 367789999999999999999
Q ss_pred eEEEEecCC----------------------------------------CeeEEEEecCCCEEEEEEcCCeEEEEECCCc
Q 004207 675 CAGVFKCQS----------------------------------------GATQMRFQPRLGRILAAAIENYISILDVETQ 714 (768)
Q Consensus 675 ~i~~~~~~~----------------------------------------~i~sl~fsp~~~~llags~Dg~I~IwD~~t~ 714 (768)
.+....... ....++|+|+.+.+++...+....++.....
T Consensus 341 ~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~ 420 (689)
T 1yiq_A 341 LLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEA 420 (689)
T ss_dssp EEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSC
T ss_pred EeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeecccc
Confidence 875443211 0123789999898888887766555544321
Q ss_pred --------e-Eee-------------------ecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEE
Q 004207 715 --------V-CRL-------------------KLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKI 766 (768)
Q Consensus 715 --------~-~~~-------------------~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~I 766 (768)
. ... ....|..||+.+++++-...+...+..-.+...+.+|++++.||.|++
T Consensus 421 ~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a 500 (689)
T 1yiq_A 421 PKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIA 500 (689)
T ss_dssp CCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEE
T ss_pred ccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEECCCCcEEE
Confidence 0 000 014688899988887743333344444456667889999999999999
Q ss_pred eC
Q 004207 767 WK 768 (768)
Q Consensus 767 WD 768 (768)
||
T Consensus 501 ~D 502 (689)
T 1yiq_A 501 YA 502 (689)
T ss_dssp EE
T ss_pred EE
Confidence 96
No 232
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.63 E-value=4.5e-06 Score=99.05 Aligned_cols=160 Identities=9% Similarity=0.015 Sum_probs=113.6
Q ss_pred EEEEEcCCCCEEEEEeCCCc-------------------EEEEECCCCeEEEEecc--CC-------CCEEEEEEcCCCC
Q 004207 559 ESCHFSPDGKLLATGGHDKK-------------------AVLWCTESFTVKSTLEE--HT-------QWITDVRFSPSLS 610 (768)
Q Consensus 559 ~sl~fSpdg~~LaSgs~Dg~-------------------I~VWdl~t~~~~~tl~~--h~-------~~V~sl~fspdg~ 610 (768)
..+++++++.+|+++..++. |..||.++++.+..+.. |. ..+.......+++
T Consensus 238 ~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~ 317 (689)
T 1yiq_A 238 DSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGK 317 (689)
T ss_dssp SCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTE
T ss_pred cceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCc
Confidence 36788998899998887763 99999999999988754 22 1222222223454
Q ss_pred ---EEEEEeCCCcEEEEECCCCCeeEEEeecC---------------------------C-----------CCeEEEEEe
Q 004207 611 ---RLATSSADRTVRVWDTENPDYSLRTFTGH---------------------------S-----------TTVMSLDFH 649 (768)
Q Consensus 611 ---~LaTgs~DgtIrVWDl~t~~~~~~~~~~h---------------------------~-----------~~V~slafs 649 (768)
.|+.++.+|.|+++|.++++.....-... . ..-..++|+
T Consensus 318 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~d 397 (689)
T 1yiq_A 318 PRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYN 397 (689)
T ss_dssp EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEE
T ss_pred EEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceEC
Confidence 78899999999999999988632111100 0 001236788
Q ss_pred CCCCeEEEEEe--------------------------------------------CCCcEEEEECCCCeeEEEEecCCCe
Q 004207 650 PSKEDLLCSCD--------------------------------------------NNSEIRYWSINNGSCAGVFKCQSGA 685 (768)
Q Consensus 650 p~g~~lLaSgs--------------------------------------------~Dg~I~iWDl~sg~~i~~~~~~~~i 685 (768)
|+...+++... .+|.|..||+.+++.+..+..+..+
T Consensus 398 p~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~ 477 (689)
T 1yiq_A 398 PDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIF 477 (689)
T ss_dssp TTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSC
T ss_pred CCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCc
Confidence 88664443211 1377999999999999988876665
Q ss_pred eEEEEecCCCEEEEEEcCCeEEEEECCCceEee
Q 004207 686 TQMRFQPRLGRILAAAIENYISILDVETQVCRL 718 (768)
Q Consensus 686 ~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~ 718 (768)
....+...++.+++++.|+.|+.||.++++.+.
T Consensus 478 ~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw 510 (689)
T 1yiq_A 478 NGGTLSTAGNLVFEGSADGRVIAYAADTGEKLW 510 (689)
T ss_dssp CCCEEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred cCccceECCCEEEEECCCCcEEEEECCCCccce
Confidence 555667778899999999999999999987643
No 233
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.62 E-value=5.5e-06 Score=89.72 Aligned_cols=192 Identities=10% Similarity=0.050 Sum_probs=122.3
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCE-----EEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCC
Q 004207 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWI-----TDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHST 641 (768)
Q Consensus 567 g~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V-----~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~ 641 (768)
+..+++++.++.|..+|..+++.+..+....... ...... +..+++++.++.|..+|..+++..-........
T Consensus 143 ~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~ 220 (376)
T 3q7m_A 143 DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQAT 220 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC--
T ss_pred CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCC
Confidence 4578888889999999999999988775432211 112222 457888888999999999988753222211100
Q ss_pred C---------e-EEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEEC
Q 004207 642 T---------V-MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDV 711 (768)
Q Consensus 642 ~---------V-~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~ 711 (768)
. + ....+. +. .++.++.++.|..+|.++++.+...... ....+... ++.+++++.++.|..||.
T Consensus 221 ~~~~~~~~~~~~~~p~~~--~~-~v~~~~~~g~l~~~d~~tG~~~w~~~~~-~~~~~~~~--~~~l~~~~~~g~l~~~d~ 294 (376)
T 3q7m_A 221 GSTEIDRLSDVDTTPVVV--NG-VVFALAYNGNLTALDLRSGQIMWKRELG-SVNDFIVD--GNRIYLVDQNDRVMALTI 294 (376)
T ss_dssp ---------CCCCCCEEE--TT-EEEEECTTSCEEEEETTTCCEEEEECCC-CEEEEEEE--TTEEEEEETTCCEEEEET
T ss_pred CCcccccccccCCCcEEE--CC-EEEEEecCcEEEEEECCCCcEEeeccCC-CCCCceEE--CCEEEEEcCCCeEEEEEC
Confidence 0 1 111112 23 4456677899999999999988766542 33444443 568888999999999999
Q ss_pred CCceEeeecc------------------------eeEEeecCCCceEEe-ccCCCCee-EEEEeCCCCEEEEEECCCcEE
Q 004207 712 ETQVCRLKLQ------------------------TLELWNMTENKTLTL-SAHDKLVS-SLAASTVNGMVASASHDKCVK 765 (768)
Q Consensus 712 ~t~~~~~~~~------------------------~I~iwd~~~~~~~~l-~~H~~~I~-sla~spdg~~LaSgs~DG~V~ 765 (768)
.+++...... .+.++|..+++.+.. ......+. ..... +..|+.++.||.|+
T Consensus 295 ~tG~~~w~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~~--~~~l~v~~~~G~l~ 372 (376)
T 3q7m_A 295 DGGVTLWTQSDLLHRLLTSPVLYNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVAA--DGKLLIQAKDGTVY 372 (376)
T ss_dssp TTCCEEEEECTTTTSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEEE--TTEEEEEBTTSCEE
T ss_pred CCCcEEEeecccCCCcccCCEEECCEEEEEeCCCeEEEEECCCCcEEEEEecCCCcceeCCEEE--CCEEEEEeCCCEEE
Confidence 8876543221 466777777766532 22122222 22222 56788899999999
Q ss_pred EeC
Q 004207 766 IWK 768 (768)
Q Consensus 766 IWD 768 (768)
+||
T Consensus 373 ~~~ 375 (376)
T 3q7m_A 373 SIT 375 (376)
T ss_dssp EEE
T ss_pred EEe
Confidence 885
No 234
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.59 E-value=2.8e-06 Score=89.53 Aligned_cols=185 Identities=10% Similarity=0.054 Sum_probs=123.4
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeE
Q 004207 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 633 (768)
Q Consensus 554 H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~ 633 (768)
+...+.++.+.+++. |+.++.++.|..||.. ++.+..+......+.++.+.+++.+++ ++ +.|..|| .+++. +
T Consensus 135 ~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~-~ 207 (330)
T 3hxj_A 135 KKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYF-GS--DKVYAIN-PDGTE-K 207 (330)
T ss_dssp SSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEE-ES--SSEEEEC-TTSCE-E
T ss_pred CCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcE-E
Confidence 334466677776776 5557778999999998 887777765566677888877776544 44 7899999 55554 4
Q ss_pred EEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCC-eeEEEEecCCCEEEEEEcCCeEEEEECC
Q 004207 634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVE 712 (768)
Q Consensus 634 ~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~-i~sl~fsp~~~~llags~Dg~I~IwD~~ 712 (768)
..+......+.++...+++. ++ .++.++.|..+|. ++..+..+..... +..+.+.++ +.|++++.++.|..||.
T Consensus 208 ~~~~~~~~~~~~~~~~~~g~-l~-v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~-g~l~v~t~~ggl~~~d~- 282 (330)
T 3hxj_A 208 WNFYAGYWTVTRPAISEDGT-IY-VTSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNT-DTIYFGSYDGHLYAINP- 282 (330)
T ss_dssp EEECCSSCCCSCCEECTTSC-EE-EEETTTEEEEECT-TSCEEEEEECSSCCCSCCEECTT-SCEEEECTTCEEEEECT-
T ss_pred EEEccCCcceeceEECCCCe-EE-EEcCCCeEEEECC-CCCEeEEeeCCCCccccceEcCC-CeEEEecCCCCEEEECC-
Confidence 44444456688888888765 44 4566788888874 5666666654333 344555544 56888888888999986
Q ss_pred CceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 004207 713 TQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 767 (768)
Q Consensus 713 t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IW 767 (768)
++... |.. ......+.++...+++. |+.++.+|.+++.
T Consensus 283 ~g~~~--------~~~--------~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~ 320 (330)
T 3hxj_A 283 DGTEK--------WNF--------ETGSWIIATPVIDENGT-IYFGTRNGKFYAL 320 (330)
T ss_dssp TSCEE--------EEE--------ECSSCCCSCCEECTTCC-EEEECTTSCEEEE
T ss_pred CCcEE--------EEE--------EcCCccccceEEcCCCE-EEEEcCCCeEEEE
Confidence 43322 111 11234567777777665 5668899998874
No 235
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.58 E-value=3.6e-06 Score=88.83 Aligned_cols=147 Identities=13% Similarity=0.125 Sum_probs=102.5
Q ss_pred CeEEEEEcCCCCEEEE----EeC-------------CCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCC-
Q 004207 557 KVESCHFSPDGKLLAT----GGH-------------DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD- 618 (768)
Q Consensus 557 ~I~sl~fSpdg~~LaS----gs~-------------Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~D- 618 (768)
.+.+++++++|+++++ |.. .+.|..||..+++..... .......++|+|+++.|+.+...
T Consensus 132 ~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~ 209 (305)
T 3dr2_A 132 SPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPE 209 (305)
T ss_dssp CCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC
T ss_pred CCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCC
Confidence 4678999999998886 322 246778887666654433 33457889999999988887665
Q ss_pred -----CcEEEEECCCCCee-EEEe-ecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEe
Q 004207 619 -----RTVRVWDTENPDYS-LRTF-TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQ 691 (768)
Q Consensus 619 -----gtIrVWDl~t~~~~-~~~~-~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fs 691 (768)
+.|++||+...... ...+ ......+..++++++|. ++++ ..+ .|.+||. .++.+..+.....+.+++|.
T Consensus 210 ~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~-lwv~-~~~-gv~~~~~-~g~~~~~~~~~~~~~~~~f~ 285 (305)
T 3dr2_A 210 QGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGW-LWSS-SGT-GVCVFDS-DGQLLGHIPTPGTASNCTFD 285 (305)
T ss_dssp ---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSC-EEEC-CSS-EEEEECT-TSCEEEEEECSSCCCEEEEC
T ss_pred cCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCC-EEEe-cCC-cEEEECC-CCCEEEEEECCCceeEEEEe
Confidence 78999998754311 1111 11234566789999987 4433 334 5999998 47777777776678999999
Q ss_pred cCCCEEEEEEcCCeEEEEE
Q 004207 692 PRLGRILAAAIENYISILD 710 (768)
Q Consensus 692 p~~~~llags~Dg~I~IwD 710 (768)
++++.|++++.++ ++.++
T Consensus 286 ~d~~~L~it~~~~-l~~~~ 303 (305)
T 3dr2_A 286 QAQQRLFITGGPC-LWMLP 303 (305)
T ss_dssp TTSCEEEEEETTE-EEEEE
T ss_pred CCCCEEEEEcCCe-EEEEE
Confidence 9888888887754 44443
No 236
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.53 E-value=1.2e-05 Score=95.30 Aligned_cols=161 Identities=10% Similarity=0.030 Sum_probs=116.0
Q ss_pred EEEEEcCCCCEEEEEeCCC-------------------cEEEEECCCCeEEEEecc--CC-------CCEEEEEEcCCC-
Q 004207 559 ESCHFSPDGKLLATGGHDK-------------------KAVLWCTESFTVKSTLEE--HT-------QWITDVRFSPSL- 609 (768)
Q Consensus 559 ~sl~fSpdg~~LaSgs~Dg-------------------~I~VWdl~t~~~~~tl~~--h~-------~~V~sl~fspdg- 609 (768)
..+++++++.+|+++..++ .|..+|.++++.+..+.. |. .....+....+|
T Consensus 246 ~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~ 325 (677)
T 1kb0_A 246 DSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGK 325 (677)
T ss_dssp SCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTE
T ss_pred cceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCc
Confidence 4678899988888887664 599999999999987753 21 122233333466
Q ss_pred --CEEEEEeCCCcEEEEECCCCCeeEEEeecC----------CCCe------------------------EEEEEeCCCC
Q 004207 610 --SRLATSSADRTVRVWDTENPDYSLRTFTGH----------STTV------------------------MSLDFHPSKE 653 (768)
Q Consensus 610 --~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h----------~~~V------------------------~slafsp~g~ 653 (768)
..|++++.+|.|+++|.++++..-..-... ..++ ..++|+|++.
T Consensus 326 ~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~ 405 (677)
T 1kb0_A 326 PRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTG 405 (677)
T ss_dssp EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTT
T ss_pred EeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCC
Confidence 689999999999999999988632221110 0001 1568888877
Q ss_pred eEEEEEe------------------------------------------CCCcEEEEECCCCeeEEEEecCCCeeEEEEe
Q 004207 654 DLLCSCD------------------------------------------NNSEIRYWSINNGSCAGVFKCQSGATQMRFQ 691 (768)
Q Consensus 654 ~lLaSgs------------------------------------------~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fs 691 (768)
.+++... ..+.|..||+.+++.+..+.....+....+.
T Consensus 406 ~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~ 485 (677)
T 1kb0_A 406 LVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLT 485 (677)
T ss_dssp EEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEE
T ss_pred EEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcceE
Confidence 5554322 1278999999999999988876666666677
Q ss_pred cCCCEEEEEEcCCeEEEEECCCceEeee
Q 004207 692 PRLGRILAAAIENYISILDVETQVCRLK 719 (768)
Q Consensus 692 p~~~~llags~Dg~I~IwD~~t~~~~~~ 719 (768)
..++.+++++.|+.|++||.++++.+..
T Consensus 486 ~~g~~v~~g~~dg~l~a~D~~tG~~lw~ 513 (677)
T 1kb0_A 486 TAGNVVFQGTADGRLVAYHAATGEKLWE 513 (677)
T ss_dssp ETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred eCCCEEEEECCCCcEEEEECCCCceeee
Confidence 7888999999999999999999877544
No 237
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.51 E-value=3.9e-06 Score=96.38 Aligned_cols=196 Identities=11% Similarity=0.081 Sum_probs=135.2
Q ss_pred CCCEEEEEeC-CCcEEEEECCCCeEEEEeccC-CCCEEEEEE-c-CCCCEEEEEe------------------CCCcEEE
Q 004207 566 DGKLLATGGH-DKKAVLWCTESFTVKSTLEEH-TQWITDVRF-S-PSLSRLATSS------------------ADRTVRV 623 (768)
Q Consensus 566 dg~~LaSgs~-Dg~I~VWdl~t~~~~~tl~~h-~~~V~sl~f-s-pdg~~LaTgs------------------~DgtIrV 623 (768)
||++++++.. +.+|.+.|+++.++...+... ...+..+++ + |+++++++++ .++.|.+
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv 179 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA 179 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence 7888776655 557999999999988855432 345888998 5 8999998885 2458999
Q ss_pred EECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCC-------------------------------------CcEE
Q 004207 624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-------------------------------------SEIR 666 (768)
Q Consensus 624 WDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~D-------------------------------------g~I~ 666 (768)
+|.++.+.......+. ....++++|+|+++++++... +.|.
T Consensus 180 ID~~t~~v~~qI~Vgg--~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~ 257 (595)
T 1fwx_A 180 VDADKWEVAWQVLVSG--NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK 257 (595)
T ss_dssp EETTTTEEEEEEEESS--CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred EECCCCeEEEEEEeCC--CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEE
Confidence 9999876533333322 456788999999888777443 2478
Q ss_pred EEECCC--Cee-EEEEecCCCeeEEEEecCCCEEEEEE-cCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCC
Q 004207 667 YWSINN--GSC-AGVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKL 742 (768)
Q Consensus 667 iWDl~s--g~~-i~~~~~~~~i~sl~fsp~~~~llags-~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~ 742 (768)
+.|.++ ++. +..+.......++.++|+|.++++++ .++.|.+||+.+......- .+ +.. ..+.....-...
T Consensus 258 VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~-~l---~~~-~~v~~~v~vG~g 332 (595)
T 1fwx_A 258 VVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYE-NA---DPR-SAVVAEPELGLG 332 (595)
T ss_dssp EEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHS-CC---CGG-GGEEECCBCCSC
T ss_pred EEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECccccccccc-cc---Ccc-cceEEEcCCCCC
Confidence 888887 555 66777667788999999999988776 5789999999865311000 00 000 011111122345
Q ss_pred eeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 743 VSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 743 I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
...++|+++|...++.-.|+.|.+||
T Consensus 333 P~h~aF~~dG~aY~t~~ldsqV~kwd 358 (595)
T 1fwx_A 333 PLHTAFDGRGNAYTSLFLDSQVVKWN 358 (595)
T ss_dssp EEEEEECTTSEEEEEETTTTEEEEEE
T ss_pred cceEEECCCCeEEEEEecCCcEEEEE
Confidence 78999999994334455699999996
No 238
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.49 E-value=6.1e-07 Score=103.02 Aligned_cols=155 Identities=10% Similarity=0.065 Sum_probs=117.9
Q ss_pred CCeEEEEE-c-CCCCEEEEEe------------------CCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEE
Q 004207 556 SKVESCHF-S-PDGKLLATGG------------------HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS 615 (768)
Q Consensus 556 ~~I~sl~f-S-pdg~~LaSgs------------------~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTg 615 (768)
..+..+++ + |+++++++++ .++.|.++|.++.+....+.... ....++++|++++++++
T Consensus 134 ~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt 212 (595)
T 1fwx_A 134 KGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFST 212 (595)
T ss_dssp CSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEE
T ss_pred CCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEE
Confidence 34888888 5 8999998885 34579999999999998886433 35678899999999998
Q ss_pred eCCC--------------------------------------cEEEEECCC--CCeeEEEeecCCCCeEEEEEeCCCCeE
Q 004207 616 SADR--------------------------------------TVRVWDTEN--PDYSLRTFTGHSTTVMSLDFHPSKEDL 655 (768)
Q Consensus 616 s~Dg--------------------------------------tIrVWDl~t--~~~~~~~~~~h~~~V~slafsp~g~~l 655 (768)
+.+. .|.|.|..+ +...+..+.. .....++.++|||+++
T Consensus 213 ~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v 291 (595)
T 1fwx_A 213 SYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHL 291 (595)
T ss_dssp ESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEE
T ss_pred ecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEE
Confidence 8653 467777776 3321333332 2356789999999999
Q ss_pred EEEEeCCCcEEEEECCCCe------------eEEEEecCCCeeEEEEecCCCEEEEE-EcCCeEEEEECCC
Q 004207 656 LCSCDNNSEIRYWSINNGS------------CAGVFKCQSGATQMRFQPRLGRILAA-AIENYISILDVET 713 (768)
Q Consensus 656 LaSgs~Dg~I~iWDl~sg~------------~i~~~~~~~~i~sl~fsp~~~~llag-s~Dg~I~IwD~~t 713 (768)
++++..+.+|.++|+.+.+ .+..+........++|+++| ++++. -.|+.|.+||+.+
T Consensus 292 ~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 292 CVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp EEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHH
T ss_pred EEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECCCC-eEEEEEecCCcEEEEEhhH
Confidence 9999899999999998652 45555667788999999999 65544 4689999999876
No 239
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.49 E-value=4.8e-05 Score=78.32 Aligned_cols=156 Identities=8% Similarity=-0.019 Sum_probs=106.0
Q ss_pred CeEEEEEcCCCCEEEE-EeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEE-eCCCcEEEEECCCCCeeEE
Q 004207 557 KVESCHFSPDGKLLAT-GGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTENPDYSLR 634 (768)
Q Consensus 557 ~I~sl~fSpdg~~LaS-gs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTg-s~DgtIrVWDl~t~~~~~~ 634 (768)
.+.+++|++++..|+. -..++.|.+++..+......+.........+++++++..|+.+ ...+.|.+++++.... ..
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~-~~ 115 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR-RV 115 (267)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EE
T ss_pred cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCE-EE
Confidence 4789999997665554 4457899999988765444443333568999999976555544 4567999999875432 22
Q ss_pred EeecCCCCeEEEEEeCCCCeEEEEEeC--CCcEEEEECCCCeeEEEEe--cCCCeeEEEEecCCCEEEEEEc-CCeEEEE
Q 004207 635 TFTGHSTTVMSLDFHPSKEDLLCSCDN--NSEIRYWSINNGSCAGVFK--CQSGATQMRFQPRLGRILAAAI-ENYISIL 709 (768)
Q Consensus 635 ~~~~h~~~V~slafsp~g~~lLaSgs~--Dg~I~iWDl~sg~~i~~~~--~~~~i~sl~fsp~~~~llags~-Dg~I~Iw 709 (768)
...........++++|++..++++... .+.|..+++.. .....+. .......++++++++.|+++.. .+.|.++
T Consensus 116 ~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg-~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~ 194 (267)
T 1npe_A 116 LFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG-TNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECL 194 (267)
T ss_dssp EECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS-CCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred EEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC-CCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEE
Confidence 222222467899999987777766544 46888888864 3333332 1245788999998888777664 5789999
Q ss_pred ECCCc
Q 004207 710 DVETQ 714 (768)
Q Consensus 710 D~~t~ 714 (768)
|....
T Consensus 195 ~~~g~ 199 (267)
T 1npe_A 195 NPAQP 199 (267)
T ss_dssp ETTEE
T ss_pred ecCCC
Confidence 98753
No 240
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.49 E-value=2.4e-05 Score=80.37 Aligned_cols=198 Identities=13% Similarity=0.088 Sum_probs=127.9
Q ss_pred eEEEEecCCCC--CeEEEEEcCCCCEEEEEeCCC--cEEEEECCCCeEEEEeccCCCC-EEEEEEcCCCCEEE-EEeCCC
Q 004207 546 TEFQLIPASTS--KVESCHFSPDGKLLATGGHDK--KAVLWCTESFTVKSTLEEHTQW-ITDVRFSPSLSRLA-TSSADR 619 (768)
Q Consensus 546 ~~~~~l~~H~~--~I~sl~fSpdg~~LaSgs~Dg--~I~VWdl~t~~~~~tl~~h~~~-V~sl~fspdg~~La-Tgs~Dg 619 (768)
+-+..+ .|.. -.-.+.|+. +.++.+.+.+| .|+++|+++++.+..+...... -..+++. +..|+ ..-.++
T Consensus 10 ~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~ 85 (243)
T 3mbr_X 10 RVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNH 85 (243)
T ss_dssp EEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSS
T ss_pred EEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCC
Confidence 334444 5543 356899985 55666666654 8999999999999887543321 1334444 34444 445688
Q ss_pred cEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecC------CCeeEEEEecC
Q 004207 620 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ------SGATQMRFQPR 693 (768)
Q Consensus 620 tIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~------~~i~sl~fsp~ 693 (768)
.+.+||.++.+. +..+... ..-..++ +++..++++- .++.|.++|..+.+.+..+... ..+..+.|.
T Consensus 86 ~v~v~D~~tl~~-~~ti~~~-~~Gwglt--~dg~~L~vSd-gs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-- 158 (243)
T 3mbr_X 86 EGFVYDLATLTP-RARFRYP-GEGWALT--SDDSHLYMSD-GTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-- 158 (243)
T ss_dssp EEEEEETTTTEE-EEEEECS-SCCCEEE--ECSSCEEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--
T ss_pred EEEEEECCcCcE-EEEEeCC-CCceEEe--eCCCEEEEEC-CCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe--
Confidence 999999998775 5555532 2234454 4566677654 4889999999999988888752 345566766
Q ss_pred CCEEEEEE-cCCeEEEEECCCceEeeecceeEEeecCCCceEE--e-ccCCCCeeEEEEeCCCCEEEEEEC
Q 004207 694 LGRILAAA-IENYISILDVETQVCRLKLQTLELWNMTENKTLT--L-SAHDKLVSSLAASTVNGMVASASH 760 (768)
Q Consensus 694 ~~~llags-~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~--l-~~H~~~I~sla~spdg~~LaSgs~ 760 (768)
++.+++.. .++.|.+.|..+++.... +++....... . ..-.+..+.|+|+|+++.|++.+.
T Consensus 159 ~G~lyanvw~s~~I~vIDp~tG~V~~~------idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 159 NGELLANVWLTSRIARIDPASGKVVAW------IDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp TTEEEEEETTTTEEEEECTTTCBEEEE------EECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred CCEEEEEECCCCeEEEEECCCCCEEEE------EECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 34566666 578999999999887543 3332110000 0 112346789999998877766654
No 241
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.49 E-value=7.2e-05 Score=79.35 Aligned_cols=194 Identities=8% Similarity=-0.004 Sum_probs=115.7
Q ss_pred CeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEe---cc-CCCCEEEEEEcC-CCCEEEEEeC-------------
Q 004207 557 KVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTL---EE-HTQWITDVRFSP-SLSRLATSSA------------- 617 (768)
Q Consensus 557 ~I~sl~fSp-dg~~LaSgs~Dg~I~VWdl~t~~~~~tl---~~-h~~~V~sl~fsp-dg~~LaTgs~------------- 617 (768)
.+.++++.+ +++ |+++...+.|.++|..++...... .+ .......+++.+ +++++++-..
T Consensus 81 ~p~gi~~~~~~g~-l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~ 159 (322)
T 2fp8_A 81 RTYDISYNLQNNQ-LYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMD 159 (322)
T ss_dssp CEEEEEEETTTTE-EEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHH
T ss_pred CCceEEEcCCCCc-EEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehc
Confidence 478899997 554 555555556888987765432211 11 123478899999 8887776533
Q ss_pred ----CCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCe--eEEEE-ecCCCeeEEEE
Q 004207 618 ----DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS--CAGVF-KCQSGATQMRF 690 (768)
Q Consensus 618 ----DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~--~i~~~-~~~~~i~sl~f 690 (768)
++.|..||..++.. ..+.........|+|+++++.++++-..++.|.+|++.... ....+ ...+ ...+++
T Consensus 160 ~~~~~g~v~~~d~~~~~~--~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~ 236 (322)
T 2fp8_A 160 TSDKTGRLIKYDPSTKET--TLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKR 236 (322)
T ss_dssp HTCCCEEEEEEETTTTEE--EEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEE
T ss_pred ccCCCceEEEEeCCCCEE--EEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEE
Confidence 36788888876543 22221223456799999988777776777899999987421 11112 2223 778999
Q ss_pred ecCCCEEEEEEc----------CCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEEC
Q 004207 691 QPRLGRILAAAI----------ENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASH 760 (768)
Q Consensus 691 sp~~~~llags~----------Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~ 760 (768)
++++..+++... .+.|..||... +. +..+....+. .-..++++++. ++.++++...
T Consensus 237 d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G-~~------~~~~~~~~g~------~~~~~~~~~~~-~g~L~v~~~~ 302 (322)
T 2fp8_A 237 NADGHFWVSSSEELDGNMHGRVDPKGIKFDEFG-NI------LEVIPLPPPF------AGEHFEQIQEH-DGLLYIGTLF 302 (322)
T ss_dssp CTTSCEEEEEEEETTSSTTSCEEEEEEEECTTS-CE------EEEEECCTTT------TTSCCCEEEEE-TTEEEEECSS
T ss_pred CCCCCEEEEecCcccccccCCCccEEEEECCCC-CE------EEEEECCCCC------ccccceEEEEe-CCEEEEeecC
Confidence 999876555544 35677777643 22 1222221111 02346667663 4555545445
Q ss_pred CCcEEEeC
Q 004207 761 DKCVKIWK 768 (768)
Q Consensus 761 DG~V~IWD 768 (768)
++.|.+++
T Consensus 303 ~~~i~~~~ 310 (322)
T 2fp8_A 303 HGSVGILV 310 (322)
T ss_dssp CSEEEEEE
T ss_pred CCceEEEe
Confidence 66776653
No 242
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.47 E-value=0.00013 Score=74.94 Aligned_cols=159 Identities=6% Similarity=-0.056 Sum_probs=105.8
Q ss_pred CCeEEEEEcCCCCEEEEE-eCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeC---CCcEEEEECCCCCe
Q 004207 556 SKVESCHFSPDGKLLATG-GHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---DRTVRVWDTENPDY 631 (768)
Q Consensus 556 ~~I~sl~fSpdg~~LaSg-s~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~---DgtIrVWDl~t~~~ 631 (768)
....++++++++..|+.+ ...+.|.+++.+.......+.........++++|++..|+.+.. .+.|.+++++....
T Consensus 79 ~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~ 158 (267)
T 1npe_A 79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR 158 (267)
T ss_dssp CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC
T ss_pred CCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc
Confidence 457899999976655544 55678999998754332223222246789999997666666554 36888888874332
Q ss_pred eEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEE-cCCeEEEEE
Q 004207 632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA-IENYISILD 710 (768)
Q Consensus 632 ~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags-~Dg~I~IwD 710 (768)
.............+++++++..++++....+.|.++|+........+........+++. ++.++++. ..+.|.++|
T Consensus 159 -~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d--~~~lyva~~~~~~v~~~d 235 (267)
T 1npe_A 159 -RILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYTDWKTNSVIAMD 235 (267)
T ss_dssp -EEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEEETTTTEEEEEE
T ss_pred -EEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEEe--CCEEEEEECCCCeEEEEe
Confidence 12222233467899999988888888888899999999855444444433445566654 45666666 457888888
Q ss_pred CCCceEe
Q 004207 711 VETQVCR 717 (768)
Q Consensus 711 ~~t~~~~ 717 (768)
..+++..
T Consensus 236 ~~~g~~~ 242 (267)
T 1npe_A 236 LAISKEM 242 (267)
T ss_dssp TTTTEEE
T ss_pred CCCCCce
Confidence 8776543
No 243
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.46 E-value=4.9e-06 Score=86.35 Aligned_cols=187 Identities=11% Similarity=0.066 Sum_probs=123.3
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCC-CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEe
Q 004207 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ-WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 636 (768)
Q Consensus 558 I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~-~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~ 636 (768)
...+.|+ ++.++++.+.+|.|+++|+++++.+..+ .... .-..+++..+ ++.+..-.++.+.+||.++.+. +..+
T Consensus 57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~-~Ly~ltw~~~~v~V~D~~Tl~~-~~ti 132 (268)
T 3nok_A 57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGE-RLYQLTWTEGLLFTWSGMPPQR-ERTT 132 (268)
T ss_dssp EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSS-CEEEEESSSCEEEEEETTTTEE-EEEE
T ss_pred cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCC-EEEEEEccCCEEEEEECCcCcE-EEEE
Confidence 4678887 4667778888899999999999988877 3222 1234555432 4444455688999999998775 5555
Q ss_pred ecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCC------CeeEEEEecCCCEEEEEE-cCCeEEEE
Q 004207 637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS------GATQMRFQPRLGRILAAA-IENYISIL 709 (768)
Q Consensus 637 ~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~------~i~sl~fsp~~~~llags-~Dg~I~Iw 709 (768)
.. ...-..++ +++..++++- .++.|.++|..+.+.+..+.... .+..+.|. ++ .+++.. .++.|.+.
T Consensus 133 ~~-~~eGwGLt--~Dg~~L~vSd-Gs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG-~lyanvw~s~~I~vI 206 (268)
T 3nok_A 133 RY-SGEGWGLC--YWNGKLVRSD-GGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NG-VIYANIWHSSDVLEI 206 (268)
T ss_dssp EC-SSCCCCEE--EETTEEEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT-EEEEEETTCSEEEEE
T ss_pred eC-CCceeEEe--cCCCEEEEEC-CCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CC-EEEEEECCCCeEEEE
Confidence 53 22334455 4566666554 58899999999999988887522 35667777 44 666666 57899999
Q ss_pred ECCCceEeeecceeEEeecCCCceEE---eccCCCCeeEEEEeCCCCEEEEEEC
Q 004207 710 DVETQVCRLKLQTLELWNMTENKTLT---LSAHDKLVSSLAASTVNGMVASASH 760 (768)
Q Consensus 710 D~~t~~~~~~~~~I~iwd~~~~~~~~---l~~H~~~I~sla~spdg~~LaSgs~ 760 (768)
|..+++.... +++....... ...-.+..+.|||+|+++.|++.+.
T Consensus 207 Dp~TG~V~~~------Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 207 DPATGTVVGV------IDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp CTTTCBEEEE------EECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred eCCCCcEEEE------EECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 9999887543 3332110000 0112346789999998765555543
No 244
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.42 E-value=0.00012 Score=77.24 Aligned_cols=189 Identities=14% Similarity=0.095 Sum_probs=114.8
Q ss_pred CCeEEEEEcCCCCEEEEEeCCC--cEEEEECCCCeEEEEec-cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCee
Q 004207 556 SKVESCHFSPDGKLLATGGHDK--KAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS 632 (768)
Q Consensus 556 ~~I~sl~fSpdg~~LaSgs~Dg--~I~VWdl~t~~~~~tl~-~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~ 632 (768)
..+.++++.++|+++++..... .|..+|..+++...... ........++..+++..+++-..++.|+++|...+...
T Consensus 72 ~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~ 151 (306)
T 2p4o_A 72 GKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGS 151 (306)
T ss_dssp SEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred CCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEe
Confidence 3588999999999766554332 47777877777543322 12233455666555544555546889999998754321
Q ss_pred EEEee---------cCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCC-Cee--EEEEecCCCeeEEEEecCCCEEEEE
Q 004207 633 LRTFT---------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSC--AGVFKCQSGATQMRFQPRLGRILAA 700 (768)
Q Consensus 633 ~~~~~---------~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~s-g~~--i~~~~~~~~i~sl~fsp~~~~llag 700 (768)
+.... ..-.....| +++++.++++-...+.|..||+.. +.. ...+........+++++++..+++.
T Consensus 152 v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va~ 229 (306)
T 2p4o_A 152 IWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGAT 229 (306)
T ss_dssp EEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEEC
T ss_pred EEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEEe
Confidence 21111 111234555 788888888888889999999874 332 2222222456678899998766555
Q ss_pred EcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEe---CCCCEEEEEECC
Q 004207 701 AIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAAS---TVNGMVASASHD 761 (768)
Q Consensus 701 s~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~s---pdg~~LaSgs~D 761 (768)
...+.|.+||... +... +. .+...-..+++++|. ++++.|++++..
T Consensus 230 ~~~~~V~~~~~~G-~~~~------~~--------~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 230 HIYNSVVRIAPDR-STTI------IA--------QAEQGVIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp BTTCCEEEECTTC-CEEE------EE--------CGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred CCCCeEEEECCCC-CEEE------Ee--------ecccccCCceEEEEecccCCCCEEEEECCC
Confidence 5678888888653 2110 00 011123458899998 888777766643
No 245
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.40 E-value=6.4e-05 Score=79.73 Aligned_cols=154 Identities=9% Similarity=0.012 Sum_probs=103.1
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEec-c------------------CCCCEEEEEEcCCCCEEEEEeC
Q 004207 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-E------------------HTQWITDVRFSPSLSRLATSSA 617 (768)
Q Consensus 557 ~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~-~------------------h~~~V~sl~fspdg~~LaTgs~ 617 (768)
...+++|.+++++++++..++.|..|+..+++...... . ....+.+|++.++...|+.+..
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~ 99 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDC 99 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEET
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEEC
Confidence 45678899999878888889999999987655432111 0 0135789999983345556655
Q ss_pred CCcEEEEECCCCCeeEEEeec-----CCCCeEEEEEeC-CCCeEEEEEeC-----------------CCcEEEEECCCCe
Q 004207 618 DRTVRVWDTENPDYSLRTFTG-----HSTTVMSLDFHP-SKEDLLCSCDN-----------------NSEIRYWSINNGS 674 (768)
Q Consensus 618 DgtIrVWDl~t~~~~~~~~~~-----h~~~V~slafsp-~g~~lLaSgs~-----------------Dg~I~iWDl~sg~ 674 (768)
.+.|.++|..++.. ..+.. .......+++.+ +|. ++++... ++.|..||..+++
T Consensus 100 ~~~i~~~d~~~g~~--~~~~~~~~~~~~~~p~~i~~d~~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~ 176 (322)
T 2fp8_A 100 YYHLSVVGSEGGHA--TQLATSVDGVPFKWLYAVTVDQRTGI-VYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKE 176 (322)
T ss_dssp TTEEEEECTTCEEC--EEEESEETTEECSCEEEEEECTTTCC-EEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTE
T ss_pred CCCEEEEeCCCCEE--EEecccCCCCcccccceEEEecCCCE-EEEECCcccccccccceehcccCCCceEEEEeCCCCE
Confidence 56688888775432 22211 123578899999 876 4444322 3678899988776
Q ss_pred eEEEEecCCCeeEEEEecCCCEEEEEE-cCCeEEEEECCC
Q 004207 675 CAGVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVET 713 (768)
Q Consensus 675 ~i~~~~~~~~i~sl~fsp~~~~llags-~Dg~I~IwD~~t 713 (768)
.............++|++++..++++. ..+.|.+|++..
T Consensus 177 ~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~ 216 (322)
T 2fp8_A 177 TTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEG 216 (322)
T ss_dssp EEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSS
T ss_pred EEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCC
Confidence 544433334567899999988777665 468899999875
No 246
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.34 E-value=2.9e-06 Score=92.91 Aligned_cols=75 Identities=7% Similarity=0.019 Sum_probs=59.9
Q ss_pred EEEeCCCCeEEEEEe---C-----CCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEE-EEEE-cCCeEEEEECCCce
Q 004207 646 LDFHPSKEDLLCSCD---N-----NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRI-LAAA-IENYISILDVETQV 715 (768)
Q Consensus 646 lafsp~g~~lLaSgs---~-----Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~l-lags-~Dg~I~IwD~~t~~ 715 (768)
++|++++++++++.. . ++.+.++|+.+.+.+..+........++|+|++.++ ++.. .++.|.++|+.+.+
T Consensus 269 v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~k 348 (368)
T 1mda_H 269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQ 348 (368)
T ss_dssp EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCE
T ss_pred eEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCc
Confidence 789999998887654 2 235669999999999988877789999999999864 4555 48999999999987
Q ss_pred Eeeec
Q 004207 716 CRLKL 720 (768)
Q Consensus 716 ~~~~~ 720 (768)
.+..+
T Consensus 349 vv~~I 353 (368)
T 1mda_H 349 DQSSV 353 (368)
T ss_dssp EEEEC
T ss_pred EEEEE
Confidence 76543
No 247
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.31 E-value=5.5e-06 Score=87.18 Aligned_cols=93 Identities=11% Similarity=0.053 Sum_probs=40.7
Q ss_pred CEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEE
Q 004207 610 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQM 688 (768)
Q Consensus 610 ~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl 688 (768)
..|+.++.++.|..+|.+ ++. ......+...+.++...+++. ++ .++.++.|..||.. ++.+..+.. ...+.++
T Consensus 108 ~~l~v~t~~~~l~~~d~~-g~~-~~~~~~~~~~~~~~~~~~~g~-l~-vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~ 182 (330)
T 3hxj_A 108 DILYVTSMDGHLYAINTD-GTE-KWRFKTKKAIYATPIVSEDGT-IY-VGSNDNYLYAINPD-GTEKWRFKTNDAITSAA 182 (330)
T ss_dssp TEEEEECTTSEEEEECTT-SCE-EEEEECSSCCCSCCEECTTSC-EE-EECTTSEEEEECTT-SCEEEEEECSSCCCSCC
T ss_pred CEEEEEecCCEEEEEcCC-CCE-EEEEcCCCceeeeeEEcCCCE-EE-EEcCCCEEEEECCC-CCEeEEEecCCCceeee
Confidence 345555555556666655 332 222222333344444444433 22 34445556666655 544444433 2223344
Q ss_pred EEecCCCEEEEEEcCCeEEEEE
Q 004207 689 RFQPRLGRILAAAIENYISILD 710 (768)
Q Consensus 689 ~fsp~~~~llags~Dg~I~IwD 710 (768)
.+.+++. +++++ +.|..||
T Consensus 183 ~~d~~g~-l~v~t--~~l~~~d 201 (330)
T 3hxj_A 183 SIGKDGT-IYFGS--DKVYAIN 201 (330)
T ss_dssp EECTTCC-EEEES--SSEEEEC
T ss_pred EEcCCCE-EEEEe--CEEEEEC
Confidence 4444433 22322 4455555
No 248
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.28 E-value=3.8e-05 Score=90.71 Aligned_cols=150 Identities=13% Similarity=0.116 Sum_probs=95.3
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEeccCCC-CEEEEEEcC--CCCEEEEEeC------CCcEEEEECCCCCeeEEEe
Q 004207 566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ-WITDVRFSP--SLSRLATSSA------DRTVRVWDTENPDYSLRTF 636 (768)
Q Consensus 566 dg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~-~V~sl~fsp--dg~~LaTgs~------DgtIrVWDl~t~~~~~~~~ 636 (768)
++..|++++.|+.|+.+|.++++.+..+..... ....+..+| .+..+++++. +|.|+.||.++++. +-.+
T Consensus 116 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~-~W~~ 194 (668)
T 1kv9_A 116 WGDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKL-AWRF 194 (668)
T ss_dssp EBTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCE-EEEE
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcE-EEEe
Confidence 356788888999999999999999987754211 000111111 1335555543 58999999999886 3222
Q ss_pred ec---C----------------------------CCCeEEEEEeCCCCeEEEEEeCCC-------------------cEE
Q 004207 637 TG---H----------------------------STTVMSLDFHPSKEDLLCSCDNNS-------------------EIR 666 (768)
Q Consensus 637 ~~---h----------------------------~~~V~slafsp~g~~lLaSgs~Dg-------------------~I~ 666 (768)
.. . ......++++++.. +++.+..++ .|.
T Consensus 195 ~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~-~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~ 273 (668)
T 1kv9_A 195 YTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELD-LLYVGTGNGSPWNREVRSPGGGDNLYLSSIL 273 (668)
T ss_dssp ESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTT-EEEEECCCEESSCHHHHSTTCCCCTTTTEEE
T ss_pred cccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCC-EEEEeCCCCCccccCCCCCCCCCceeeeeEE
Confidence 21 0 01112467888766 444565554 499
Q ss_pred EEECCCCeeEEEEecC----------CCeeEEEEecCCC---EEEEEEcCCeEEEEECCCceEe
Q 004207 667 YWSINNGSCAGVFKCQ----------SGATQMRFQPRLG---RILAAAIENYISILDVETQVCR 717 (768)
Q Consensus 667 iWDl~sg~~i~~~~~~----------~~i~sl~fsp~~~---~llags~Dg~I~IwD~~t~~~~ 717 (768)
.+|.++|+.+..+... .......+..++. .+++++.+|.++++|..+++.+
T Consensus 274 AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l 337 (668)
T 1kv9_A 274 AIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLI 337 (668)
T ss_dssp EECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred EEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEe
Confidence 9999999999888752 1222223334544 5778888999999998887654
No 249
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.23 E-value=0.00054 Score=72.18 Aligned_cols=203 Identities=9% Similarity=0.026 Sum_probs=119.5
Q ss_pred eeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCC--cEE
Q 004207 545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR--TVR 622 (768)
Q Consensus 545 ~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~Dg--tIr 622 (768)
.+.+..+..+ ....+++|+++++++++...++.|..||.+. +....+. ....+.+|++.++++++++..... .|.
T Consensus 22 ~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~ 98 (306)
T 2p4o_A 22 AKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVV 98 (306)
T ss_dssp EEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred ceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEE
Confidence 3445555443 4588999999999777777889999999875 3333333 235689999999998666554332 466
Q ss_pred EEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCee-EEEEe-------c---CCCeeEEEEe
Q 004207 623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGVFK-------C---QSGATQMRFQ 691 (768)
Q Consensus 623 VWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~-i~~~~-------~---~~~i~sl~fs 691 (768)
.+|..+++...............++..+. ..++++...++.|.++|...+.. +.... . -.....+ +
T Consensus 99 ~~d~~~g~~~~~~~~~~~~~~~g~~~~~~-~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s 175 (306)
T 2p4o_A 99 SLVKSDGTVETLLTLPDAIFLNGITPLSD-TQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--K 175 (306)
T ss_dssp EEECTTSCEEEEEECTTCSCEEEEEESSS-SEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--E
T ss_pred EEcCCCCeEEEEEeCCCccccCcccccCC-CcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--C
Confidence 67777666422111122233455555444 44565555688999999876532 21111 0 1123444 7
Q ss_pred cCCCEEEEEE-cCCeEEEEECCC-ceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 692 PRLGRILAAA-IENYISILDVET-QVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 692 p~~~~llags-~Dg~I~IwD~~t-~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
+++++++++. ..+.|.+||+.. +.. ...+++- . ......++++++|.++++....+.|.+||
T Consensus 176 ~dg~~lyv~d~~~~~I~~~~~~~~g~~----~~~~~~~-------~----~~~P~gi~vd~dG~l~va~~~~~~V~~~~ 239 (306)
T 2p4o_A 176 RFGNFLYVSNTEKMLLLRIPVDSTDKP----GEPEIFV-------E----QTNIDDFAFDVEGNLYGATHIYNSVVRIA 239 (306)
T ss_dssp EETTEEEEEETTTTEEEEEEBCTTSCB----CCCEEEE-------E----SCCCSSEEEBTTCCEEEECBTTCCEEEEC
T ss_pred cCCCEEEEEeCCCCEEEEEEeCCCCCC----CccEEEe-------c----cCCCCCeEECCCCCEEEEeCCCCeEEEEC
Confidence 8887777666 467899999864 211 0011110 0 02345677777776655555556666654
No 250
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.21 E-value=0.0017 Score=67.17 Aligned_cols=209 Identities=11% Similarity=0.081 Sum_probs=135.3
Q ss_pred EEecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeEEEEecc-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004207 549 QLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEE-HTQWITDVRFSPSLSRLATSSADRTVRVWDT 626 (768)
Q Consensus 549 ~~l~~H~~~I~sl~fSpdg~-~LaSgs~Dg~I~VWdl~t~~~~~tl~~-h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl 626 (768)
+.+.+-.+.+..++|+|+++ ++++...++.|...|.. ++.+..+.. -......|++.+++.++++.-.++.|.++++
T Consensus 20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v 98 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISL 98 (255)
T ss_dssp EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence 45667777899999999766 55567778899999998 888877742 2246889999998877777667788999988
Q ss_pred CCCCe--eEEEee------cCCCCeEEEEEeCCCCeEEEEEeCCC-cEEEEEC-CCCeeEEEEec--------CCCeeEE
Q 004207 627 ENPDY--SLRTFT------GHSTTVMSLDFHPSKEDLLCSCDNNS-EIRYWSI-NNGSCAGVFKC--------QSGATQM 688 (768)
Q Consensus 627 ~t~~~--~~~~~~------~h~~~V~slafsp~g~~lLaSgs~Dg-~I~iWDl-~sg~~i~~~~~--------~~~i~sl 688 (768)
..... .+.... ........|+|+|.+..+++++..+. .|+.|+- .....+..+.. -..+..+
T Consensus 99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l 178 (255)
T 3qqz_A 99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA 178 (255)
T ss_dssp CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence 65442 122221 13445789999999888887666554 5555551 11112222211 2357899
Q ss_pred EEecCCCEEEEEEc-CCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 004207 689 RFQPRLGRILAAAI-ENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 767 (768)
Q Consensus 689 ~fsp~~~~llags~-Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IW 767 (768)
+++|..+.+++.+. ...|.++|.... . +..+.+..+..- +..--.....|+|.++|++.++ ++-..+++|
T Consensus 179 ~~dp~tg~lliLS~~s~~L~~~d~~g~-~------~~~~~L~~g~~~-l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f 249 (255)
T 3qqz_A 179 EFNQQKNTLLVLSHESRALQEVTLVGE-V------IGEMSLTKGSRG-LSHNIKQAEGVAMDASGNIYIV-SEPNRFYRF 249 (255)
T ss_dssp EEETTTTEEEEEETTTTEEEEECTTCC-E------EEEEECSTTGGG-CSSCCCSEEEEEECTTCCEEEE-ETTTEEEEE
T ss_pred EEcCCCCeEEEEECCCCeEEEEcCCCC-E------EEEEEcCCccCC-cccccCCCCeeEECCCCCEEEE-cCCceEEEE
Confidence 99999888777775 466788887654 2 233333322100 0001124578999999985544 776666655
No 251
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.14 E-value=0.00025 Score=76.48 Aligned_cols=191 Identities=13% Similarity=0.160 Sum_probs=122.1
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCC----CC---EEEEEeC---CCcEEEEECCCCCeeEEE
Q 004207 566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS----LS---RLATSSA---DRTVRVWDTENPDYSLRT 635 (768)
Q Consensus 566 dg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspd----g~---~LaTgs~---DgtIrVWDl~t~~~~~~~ 635 (768)
...+++....++-+.|||+ +++.+..+.. +.++.|..-|+ ++ ++++... +++|++|+++.....+..
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~ 115 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS 115 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceee
Confidence 3445666667788999999 7888888854 56777777663 22 2333333 579999977422222444
Q ss_pred eec------CC-CCeEEEEE--eCC-CCeEEEEEeCCCcEEEEECC-------CCeeEEEEecCCCeeEEEEecCCCEEE
Q 004207 636 FTG------HS-TTVMSLDF--HPS-KEDLLCSCDNNSEIRYWSIN-------NGSCAGVFKCQSGATQMRFQPRLGRIL 698 (768)
Q Consensus 636 ~~~------h~-~~V~slaf--sp~-g~~lLaSgs~Dg~I~iWDl~-------sg~~i~~~~~~~~i~sl~fsp~~~~ll 698 (768)
+.. .. ..+..+|+ ++. +..++++...+|.+..|++. +.+.++.|...+.+..|.+.+..+.|+
T Consensus 116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Ly 195 (355)
T 3amr_A 116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLY 195 (355)
T ss_dssp CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEE
T ss_pred ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEE
Confidence 421 11 55777887 664 44456677788999999883 346788888888999999999999999
Q ss_pred EEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEE--eCCCC-EEEEEE-CCCcEEEeC
Q 004207 699 AAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAA--STVNG-MVASAS-HDKCVKIWK 768 (768)
Q Consensus 699 ags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~--spdg~-~LaSgs-~DG~V~IWD 768 (768)
++-.+..|..||.+..... ....+..+. ...-...+..|++ .+++. ||++++ .+.++.|||
T Consensus 196 v~eEd~GIw~~da~p~~~~-~~~~v~~~~--------~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vyd 260 (355)
T 3amr_A 196 IAEEDEAIWKFSAEPDGGS-NGTVIDRAD--------GRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYD 260 (355)
T ss_dssp EEETTTEEEEEECSTTSCS-CCEEEEEBS--------SSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEE
T ss_pred EecccceEEEEeCCcCCCC-CceEEEEec--------CCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEE
Confidence 9999988877875522100 000011111 0111235777777 44554 677666 466777775
No 252
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.12 E-value=0.00017 Score=75.20 Aligned_cols=128 Identities=11% Similarity=-0.013 Sum_probs=89.3
Q ss_pred CeEEEEeccCCC--CEEEEEEcCCCCEEEEEeC--CCcEEEEECCCCCeeEEEee-cCCCCeEEEEEeCCCCeEEEEEeC
Q 004207 587 FTVKSTLEEHTQ--WITDVRFSPSLSRLATSSA--DRTVRVWDTENPDYSLRTFT-GHSTTVMSLDFHPSKEDLLCSCDN 661 (768)
Q Consensus 587 ~~~~~tl~~h~~--~V~sl~fspdg~~LaTgs~--DgtIrVWDl~t~~~~~~~~~-~h~~~V~slafsp~g~~lLaSgs~ 661 (768)
.+.+.++. |.. ....+.|++++.++++.+. ++.|+++|+.+++. +..+. +.......++++ ++.++++.-.
T Consensus 9 ~~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v-~~~i~l~~~~fgeGi~~~--g~~lyv~t~~ 84 (266)
T 2iwa_A 9 VEVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKV-ENIHKMDDSYFGEGLTLL--NEKLYQVVWL 84 (266)
T ss_dssp EEEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCE-EEEEECCTTCCEEEEEEE--TTEEEEEETT
T ss_pred ceEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCE-EEEEecCCCcceEEEEEe--CCEEEEEEec
Confidence 34556663 443 3689999998644444443 57999999999886 44432 222233456665 5678878878
Q ss_pred CCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeee
Q 004207 662 NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK 719 (768)
Q Consensus 662 Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~ 719 (768)
++.|.++|..+.+.+..+... ......+++++..++++..++.|.++|..+.+....
T Consensus 85 ~~~v~viD~~t~~v~~~i~~g-~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~ 141 (266)
T 2iwa_A 85 KNIGFIYDRRTLSNIKNFTHQ-MKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKK 141 (266)
T ss_dssp CSEEEEEETTTTEEEEEEECC-SSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEE
T ss_pred CCEEEEEECCCCcEEEEEECC-CCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEE
Confidence 999999999999999998754 122344566788888877889999999998765543
No 253
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.11 E-value=0.00019 Score=83.11 Aligned_cols=199 Identities=14% Similarity=0.034 Sum_probs=119.7
Q ss_pred CEEEEEeC------CCcEEEEECCCCeEEEEeccCCCC-------------------------------------E-EEE
Q 004207 568 KLLATGGH------DKKAVLWCTESFTVKSTLEEHTQW-------------------------------------I-TDV 603 (768)
Q Consensus 568 ~~LaSgs~------Dg~I~VWdl~t~~~~~tl~~h~~~-------------------------------------V-~sl 603 (768)
..+++++. ++.|+.+|.++++.+.++...... + ..+
T Consensus 161 g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~ 240 (571)
T 2ad6_A 161 DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWY 240 (571)
T ss_dssp TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCC
T ss_pred CEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeE
Confidence 34555544 789999999999999876532110 0 135
Q ss_pred EEcCCCCEEEEEeCC----------------CcEEEEECCCCCeeEEEee--cCC--------CCeEEEEEeCCCC--eE
Q 004207 604 RFSPSLSRLATSSAD----------------RTVRVWDTENPDYSLRTFT--GHS--------TTVMSLDFHPSKE--DL 655 (768)
Q Consensus 604 ~fspdg~~LaTgs~D----------------gtIrVWDl~t~~~~~~~~~--~h~--------~~V~slafsp~g~--~l 655 (768)
++.++...++.+..+ +.|..+|.++++. +-.+. .|. .++ -+....+|+ .+
T Consensus 241 a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~-~W~~~~~~~d~~d~~~~~~p~-l~~~~~~G~~~~~ 318 (571)
T 2ad6_A 241 AYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMA-KWGYQKTPHDEWDFAGVNQMV-LTDQPVNGKMTPL 318 (571)
T ss_dssp EEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCE-EEEEESSTTCSSCCCCCCCCE-EEEEEETTEEEEE
T ss_pred EEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcE-EEEecCCCCcccccccCCCCE-EEecccCCcEEEE
Confidence 566766677666532 3599999999885 33322 121 222 122234554 46
Q ss_pred EEEEeCCCcEEEEECCCCeeEEEEecCCC--------------e--------------------------eEEEEecCCC
Q 004207 656 LCSCDNNSEIRYWSINNGSCAGVFKCQSG--------------A--------------------------TQMRFQPRLG 695 (768)
Q Consensus 656 LaSgs~Dg~I~iWDl~sg~~i~~~~~~~~--------------i--------------------------~sl~fsp~~~ 695 (768)
++.++.+|.|+++|..+|+.+..+..... + ..++|+|+.+
T Consensus 319 v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g 398 (571)
T 2ad6_A 319 LSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESR 398 (571)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTT
T ss_pred EEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCC
Confidence 77888899999999999998877654321 0 2367888888
Q ss_pred EEEEEEcCCeEEEEECCCc----eE--------e--------eecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEE
Q 004207 696 RILAAAIENYISILDVETQ----VC--------R--------LKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMV 755 (768)
Q Consensus 696 ~llags~Dg~I~IwD~~t~----~~--------~--------~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~L 755 (768)
.+++.+.+....++..... .. . .....|..||..+++.+-...+...+.+..+...+.+|
T Consensus 399 ~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v 478 (571)
T 2ad6_A 399 TLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLV 478 (571)
T ss_dssp EEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEE
T ss_pred EEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCCccceeEEECCCEE
Confidence 8888776544333322110 00 0 01235677777777665322222333333333446778
Q ss_pred EEEECCCcEEEeC
Q 004207 756 ASASHDKCVKIWK 768 (768)
Q Consensus 756 aSgs~DG~V~IWD 768 (768)
++++.||.|++||
T Consensus 479 ~~g~~dg~l~a~D 491 (571)
T 2ad6_A 479 WYATLDGYLKALD 491 (571)
T ss_dssp EEECTTSEEEEEE
T ss_pred EEEcCCCeEEEEE
Confidence 8889999999886
No 254
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.08 E-value=0.00041 Score=77.31 Aligned_cols=154 Identities=12% Similarity=0.139 Sum_probs=101.9
Q ss_pred CeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCC-C----cEEEEECCCCC
Q 004207 557 KVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD-R----TVRVWDTENPD 630 (768)
Q Consensus 557 ~I~sl~fSp-dg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~D-g----tIrVWDl~t~~ 630 (768)
....|+|+| ++..|+++...+.|+++|++++....... .......|+|++++++|+++... + .+.+++.....
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~ 216 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGF 216 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTS
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCce
Confidence 457899998 45566666555889999998766554443 44568899999999966666552 2 34444433221
Q ss_pred eeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec--CCCeeEEEEecCCCEEEEEE-cCCeEE
Q 004207 631 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGRILAAA-IENYIS 707 (768)
Q Consensus 631 ~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~--~~~i~sl~fsp~~~~llags-~Dg~I~ 707 (768)
.....+.. ......++++|++..++++-..++.|..||...+.....+.. ......++|+|++++|+++. ..+.|.
T Consensus 217 ~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~ 295 (430)
T 3tc9_A 217 KVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYIL 295 (430)
T ss_dssp CSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEE
T ss_pred eeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEE
Confidence 11122222 234678899995555776776788999999987665333332 23467899999999666665 567888
Q ss_pred EEECC
Q 004207 708 ILDVE 712 (768)
Q Consensus 708 IwD~~ 712 (768)
.|+..
T Consensus 296 ~~~~d 300 (430)
T 3tc9_A 296 RSDYD 300 (430)
T ss_dssp EEEEE
T ss_pred EEeCC
Confidence 87654
No 255
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.02 E-value=0.00016 Score=85.43 Aligned_cols=161 Identities=11% Similarity=0.068 Sum_probs=112.0
Q ss_pred EEEEEcCCCCEEEEEeCCC-------------------cEEEEECCCCeEEEEecc--CC-------CCEEEEEEcCCCC
Q 004207 559 ESCHFSPDGKLLATGGHDK-------------------KAVLWCTESFTVKSTLEE--HT-------QWITDVRFSPSLS 610 (768)
Q Consensus 559 ~sl~fSpdg~~LaSgs~Dg-------------------~I~VWdl~t~~~~~tl~~--h~-------~~V~sl~fspdg~ 610 (768)
..+++.++..+++.+..++ .|..+|.++++.+..+.. |. .++....+..+++
T Consensus 233 ~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~ 312 (668)
T 1kv9_A 233 DSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGK 312 (668)
T ss_dssp SCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTE
T ss_pred cceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCc
Confidence 4578888888888887766 399999999999988754 22 2233233333554
Q ss_pred ---EEEEEeCCCcEEEEECCCCCeeEEEeecC----------C-CC------------------------eEEEEEeCCC
Q 004207 611 ---RLATSSADRTVRVWDTENPDYSLRTFTGH----------S-TT------------------------VMSLDFHPSK 652 (768)
Q Consensus 611 ---~LaTgs~DgtIrVWDl~t~~~~~~~~~~h----------~-~~------------------------V~slafsp~g 652 (768)
.|++++.+|.|+++|.++++.....-... . .+ -..++++|+.
T Consensus 313 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~ 392 (668)
T 1kv9_A 313 PRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGT 392 (668)
T ss_dssp EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTT
T ss_pred EEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCC
Confidence 68899999999999999988632111000 0 00 0126777776
Q ss_pred CeEEEEE-----------------------------------eCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEE
Q 004207 653 EDLLCSC-----------------------------------DNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRI 697 (768)
Q Consensus 653 ~~lLaSg-----------------------------------s~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~l 697 (768)
..+++.. ..+|.|..||+.+++.+..+..........+...++.+
T Consensus 393 g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v 472 (668)
T 1kv9_A 393 GLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLV 472 (668)
T ss_dssp TEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEE
T ss_pred CEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEE
Confidence 6544321 12478999999999999888776655555566678899
Q ss_pred EEEEcCCeEEEEECCCceEeee
Q 004207 698 LAAAIENYISILDVETQVCRLK 719 (768)
Q Consensus 698 lags~Dg~I~IwD~~t~~~~~~ 719 (768)
++++.|+.|++||.++++....
T Consensus 473 f~g~~dg~l~a~d~~tG~~l~~ 494 (668)
T 1kv9_A 473 FQGTAAGQMHAYSADKGEALWQ 494 (668)
T ss_dssp EEECTTSEEEEEETTTCCEEEE
T ss_pred EEECCcccchhhhhhcChhheE
Confidence 9999999999999999876543
No 256
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.02 E-value=0.00095 Score=73.17 Aligned_cols=158 Identities=8% Similarity=0.001 Sum_probs=106.6
Q ss_pred CCCeEEEEEcCCCCEEE-EEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCE-EEEEeCCCcEEEEECCCCCee
Q 004207 555 TSKVESCHFSPDGKLLA-TGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR-LATSSADRTVRVWDTENPDYS 632 (768)
Q Consensus 555 ~~~I~sl~fSpdg~~La-Sgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~-LaTgs~DgtIrVWDl~t~~~~ 632 (768)
...+..++|++.+..|+ +-...+.|..+++........+.........|++.+.+.. +++-...+.|.+.+++....
T Consensus 115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~- 193 (386)
T 3v65_B 115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR- 193 (386)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSC-
T ss_pred CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCce-
Confidence 34588999998655544 5456788999998876554444333345678889875444 45555567898888875432
Q ss_pred EEEeecCCCCeEEEEEeCCCCeEEEEEeCC-CcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEEc-CCeEEEE
Q 004207 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-SEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAI-ENYISIL 709 (768)
Q Consensus 633 ~~~~~~h~~~V~slafsp~g~~lLaSgs~D-g~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags~-Dg~I~Iw 709 (768)
...+.........|+++|.+..++++-..+ +.|..+++........... -.....++|+|+++.|+.+.. .+.|..+
T Consensus 194 ~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~ 273 (386)
T 3v65_B 194 KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERA 273 (386)
T ss_dssp EEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred EEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEE
Confidence 233333345689999999888788776655 7899999874333332222 234678999988888877764 5678888
Q ss_pred ECCC
Q 004207 710 DVET 713 (768)
Q Consensus 710 D~~t 713 (768)
|+..
T Consensus 274 d~dG 277 (386)
T 3v65_B 274 NLDG 277 (386)
T ss_dssp CTTS
T ss_pred eCCC
Confidence 8764
No 257
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.02 E-value=0.0015 Score=70.44 Aligned_cols=156 Identities=8% Similarity=0.011 Sum_probs=106.9
Q ss_pred CCeEEEEEcCCCCEEE-EEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCCeeE
Q 004207 556 SKVESCHFSPDGKLLA-TGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPDYSL 633 (768)
Q Consensus 556 ~~I~sl~fSpdg~~La-Sgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~-~LaTgs~DgtIrVWDl~t~~~~~ 633 (768)
..+..++|++....|+ +-...+.|..+++........+.........+++.+.+. ++++-...+.|.+.+++.... .
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~-~ 151 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR-K 151 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC-E
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCce-E
Confidence 4488999998665555 445678899999887654444433334567899987544 445555678999999875432 2
Q ss_pred EEeecCCCCeEEEEEeCCCCeEEEEEeCC-CcEEEEECCCCeeEEEE-e-cCCCeeEEEEecCCCEEEEEEc-CCeEEEE
Q 004207 634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNN-SEIRYWSINNGSCAGVF-K-CQSGATQMRFQPRLGRILAAAI-ENYISIL 709 (768)
Q Consensus 634 ~~~~~h~~~V~slafsp~g~~lLaSgs~D-g~I~iWDl~sg~~i~~~-~-~~~~i~sl~fsp~~~~llags~-Dg~I~Iw 709 (768)
..+.........|+++|.+..++++-..+ +.|..+++.... ...+ . .-.....++++|+++.|+.+.. .+.|..+
T Consensus 152 ~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~ 230 (349)
T 3v64_C 152 VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG-RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERA 230 (349)
T ss_dssp EEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred EEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC-cEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEE
Confidence 33333445678999999878788776666 889999987432 2322 2 1234678999998888877764 5678888
Q ss_pred ECCC
Q 004207 710 DVET 713 (768)
Q Consensus 710 D~~t 713 (768)
|+..
T Consensus 231 ~~dG 234 (349)
T 3v64_C 231 NLDG 234 (349)
T ss_dssp ETTS
T ss_pred eCCC
Confidence 8765
No 258
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.00 E-value=0.0041 Score=65.96 Aligned_cols=157 Identities=13% Similarity=0.029 Sum_probs=103.3
Q ss_pred CCCeEEEEEcCCCCEEE-EEeCCCcEEEEECCC----CeEEEEeccCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEECCC
Q 004207 555 TSKVESCHFSPDGKLLA-TGGHDKKAVLWCTES----FTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTEN 628 (768)
Q Consensus 555 ~~~I~sl~fSpdg~~La-Sgs~Dg~I~VWdl~t----~~~~~tl~~h~~~V~sl~fspdg~~L-aTgs~DgtIrVWDl~t 628 (768)
-..+.+++|++++..|+ +-..++.|..+++.+ ......+...-.....+++++.+..| ++-...+.|.++|++.
T Consensus 29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g 108 (316)
T 1ijq_A 29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 108 (316)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC
Confidence 34578999998665554 445568899999876 22222333222456789998754444 5556678999999875
Q ss_pred CCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCC-CcEEEEECCCCeeEEEEe--cCCCeeEEEEecCCCEEEEEEc-CC
Q 004207 629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-SEIRYWSINNGSCAGVFK--CQSGATQMRFQPRLGRILAAAI-EN 704 (768)
Q Consensus 629 ~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~D-g~I~iWDl~sg~~i~~~~--~~~~i~sl~fsp~~~~llags~-Dg 704 (768)
... .............++++|.+..++++.... +.|..+++. ++....+. .-.....++++++++.|+.+.. .+
T Consensus 109 ~~~-~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~ 186 (316)
T 1ijq_A 109 VKR-KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLH 186 (316)
T ss_dssp SSE-EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred Cce-EEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeEEEEECCCCCceEEEEeccCCEEEEEECCCC
Confidence 432 223333345688999999878777766544 788888886 44333332 2345678999998888887774 56
Q ss_pred eEEEEECCC
Q 004207 705 YISILDVET 713 (768)
Q Consensus 705 ~I~IwD~~t 713 (768)
.|..+|+..
T Consensus 187 ~I~~~d~dg 195 (316)
T 1ijq_A 187 SISSIDVNG 195 (316)
T ss_dssp EEEEEETTS
T ss_pred eEEEEecCC
Confidence 899998865
No 259
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.96 E-value=0.00019 Score=85.92 Aligned_cols=152 Identities=9% Similarity=0.061 Sum_probs=94.4
Q ss_pred CeEEEEEc-CCCCEEEEEeC-CC----cEEEEECCCC-eEEE-EeccCCCCEEEEEEcCCCCEEEEEeCC-----CcEEE
Q 004207 557 KVESCHFS-PDGKLLATGGH-DK----KAVLWCTESF-TVKS-TLEEHTQWITDVRFSPSLSRLATSSAD-----RTVRV 623 (768)
Q Consensus 557 ~I~sl~fS-pdg~~LaSgs~-Dg----~I~VWdl~t~-~~~~-tl~~h~~~V~sl~fspdg~~LaTgs~D-----gtIrV 623 (768)
.+...+|| |||++||.+.. +| .|+++|+.++ +.+. .+. .....++|+||++.|+....| ..|++
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 57889999 99998875533 33 4999999988 6321 111 113468899999888777765 25888
Q ss_pred EECCCCCee-EEEee-cCCCCeEEEEEeCCCCeEEEEEeC--CCcEEEEECCCC--ee-EEEEe-c-CCCeeEEEEecCC
Q 004207 624 WDTENPDYS-LRTFT-GHSTTVMSLDFHPSKEDLLCSCDN--NSEIRYWSINNG--SC-AGVFK-C-QSGATQMRFQPRL 694 (768)
Q Consensus 624 WDl~t~~~~-~~~~~-~h~~~V~slafsp~g~~lLaSgs~--Dg~I~iWDl~sg--~~-i~~~~-~-~~~i~sl~fsp~~ 694 (768)
+++.++... ...+. ........+.|+|+|+.++++... ...|+++|+.++ .. +..+. . ......+.|+. +
T Consensus 252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~-g 330 (751)
T 2xe4_A 252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHG-T 330 (751)
T ss_dssp EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEET-T
T ss_pred EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeee-C
Confidence 888775421 22222 233456788999999988876643 346888899875 22 02222 1 22334444443 5
Q ss_pred CEEEEEEcCC-----eEEEEECC
Q 004207 695 GRILAAAIEN-----YISILDVE 712 (768)
Q Consensus 695 ~~llags~Dg-----~I~IwD~~ 712 (768)
+.|+..+..+ .|.++|+.
T Consensus 331 ~~l~~~t~~~~a~~~~L~~~d~~ 353 (751)
T 2xe4_A 331 SHLVILTNEGGAVNHKLLIAPRG 353 (751)
T ss_dssp TEEEEEECTTTCTTCEEEEEETT
T ss_pred CEEEEEeCCCCCCCcEEEEEcCC
Confidence 6666555432 45555654
No 260
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.95 E-value=0.0042 Score=65.91 Aligned_cols=137 Identities=7% Similarity=-0.023 Sum_probs=91.9
Q ss_pred CCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEE-EeCCCcEEEEECCCC---CeeEEEeecCCCCeEEEEEeCC
Q 004207 576 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT-SSADRTVRVWDTENP---DYSLRTFTGHSTTVMSLDFHPS 651 (768)
Q Consensus 576 Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaT-gs~DgtIrVWDl~t~---~~~~~~~~~h~~~V~slafsp~ 651 (768)
...|+..|+.+.+....+. ....+..++|++.+..|+. -..++.|..++++.. ......+...-.....|++++.
T Consensus 9 ~~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~ 87 (316)
T 1ijq_A 9 RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 87 (316)
T ss_dssp BSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETT
T ss_pred CCeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeec
Confidence 3569999998876655554 3456889999987555554 455689999998751 2212223223345688999987
Q ss_pred CCeEEEEEeCCCcEEEEECCCCeeEEEEe-cCCCeeEEEEecCCCEEEEEEcC--CeEEEEECCC
Q 004207 652 KEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIE--NYISILDVET 713 (768)
Q Consensus 652 g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~-~~~~i~sl~fsp~~~~llags~D--g~I~IwD~~t 713 (768)
+..++++-..++.|.++|+........+. .......++++|.+++++.+... +.|..+++..
T Consensus 88 ~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG 152 (316)
T 1ijq_A 88 HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG 152 (316)
T ss_dssp TTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred CCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC
Confidence 77788777778899999987544333333 23567889999988888777653 5787777754
No 261
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=97.94 E-value=0.0078 Score=72.01 Aligned_cols=206 Identities=8% Similarity=0.058 Sum_probs=132.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecc-------CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004207 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-------HTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (768)
Q Consensus 555 ~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~-------h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~ 627 (768)
...|.++...++|.+.+ |+.+ -|.+||..+++....... ....|.++...++|. |..|+.++-|.+|+..
T Consensus 262 ~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~ 338 (795)
T 4a2l_A 262 SNYIRSLAMDSQNRLWI-GTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPI 338 (795)
T ss_dssp CSBEEEEEECTTSCEEE-EESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGG
T ss_pred CCeEEEEEEcCCCCEEE-EeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCC
Confidence 35699999988887554 4444 589999887765543211 235699999998876 5567777789999876
Q ss_pred CCCeeEEEee-----cCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEe---------cCCCeeEEEEecC
Q 004207 628 NPDYSLRTFT-----GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---------CQSGATQMRFQPR 693 (768)
Q Consensus 628 t~~~~~~~~~-----~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~---------~~~~i~sl~fsp~ 693 (768)
+......... -....|.++...++|. +. .|+.++-|.+||..++....... ....|.+++..++
T Consensus 339 ~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lW-iGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~ 416 (795)
T 4a2l_A 339 RNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LW-IGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEK 416 (795)
T ss_dssp GGSSEEECCCTTSSSCSCSSEEEEEECTTSC-EE-EEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETT
T ss_pred cccceEEcCCCCCCCCCCCeeEEEEECCCCC-EE-EEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCC
Confidence 5443111110 0235699999888876 33 46767789999988766543321 1245788888887
Q ss_pred CCEEEEEEcCCeEEEEECCCceEeeec---------------------------ceeEEeecCCCceEEecc-------C
Q 004207 694 LGRILAAAIENYISILDVETQVCRLKL---------------------------QTLELWNMTENKTLTLSA-------H 739 (768)
Q Consensus 694 ~~~llags~Dg~I~IwD~~t~~~~~~~---------------------------~~I~iwd~~~~~~~~l~~-------H 739 (768)
+..|.+|+.++.|.+||..++...... ..+.+||..++....+.. +
T Consensus 417 g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~~Gl~~~~~~~~~~~~~~~~~~~~~~~ 496 (795)
T 4a2l_A 417 KSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTLSALVRFNPEQRSFTTIEKEKDGTPVV 496 (795)
T ss_dssp TTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEESSCEEEEETTTTEEEECCBCTTCCBCC
T ss_pred CCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEecCceeEEeCCCCeEEEccccccccccC
Confidence 664778888788999998765332110 134455555554433321 2
Q ss_pred CCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 004207 740 DKLVSSLAASTVNGMVASASHDKCVKIW 767 (768)
Q Consensus 740 ~~~I~sla~spdg~~LaSgs~DG~V~IW 767 (768)
...|.++...+++.+.+.. .+| |.+|
T Consensus 497 ~~~i~~i~~d~~g~lWigt-~~G-l~~~ 522 (795)
T 4a2l_A 497 SKQITTLFRDSHKRLWIGG-EEG-LSVF 522 (795)
T ss_dssp CCCEEEEEECTTCCEEEEE-SSC-EEEE
T ss_pred CceEEEEEECCCCCEEEEe-CCc-eEEE
Confidence 3568899988888765544 444 4444
No 262
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.93 E-value=0.0019 Score=74.84 Aligned_cols=199 Identities=12% Similarity=0.058 Sum_probs=116.3
Q ss_pred EEEEEe------CCCcEEEEECCCCeEEEEeccCCCCE-----------------------------------------E
Q 004207 569 LLATGG------HDKKAVLWCTESFTVKSTLEEHTQWI-----------------------------------------T 601 (768)
Q Consensus 569 ~LaSgs------~Dg~I~VWdl~t~~~~~tl~~h~~~V-----------------------------------------~ 601 (768)
.|++++ .++.|+.+|..+++.+.........+ .
T Consensus 170 ~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~ 249 (582)
T 1flg_A 170 LLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQ 249 (582)
T ss_dssp EEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCS
T ss_pred EEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccC
Confidence 555554 37899999999999887654321100 1
Q ss_pred EEEEcCCCCEEEEEeC--------------------C----CcEEEEECCCCCeeEEEee-cCC--------CCeEEEEE
Q 004207 602 DVRFSPSLSRLATSSA--------------------D----RTVRVWDTENPDYSLRTFT-GHS--------TTVMSLDF 648 (768)
Q Consensus 602 sl~fspdg~~LaTgs~--------------------D----gtIrVWDl~t~~~~~~~~~-~h~--------~~V~slaf 648 (768)
.++++|+..+++.+.. | +.|..+|.++++..-..-. .|. .++. +..
T Consensus 250 ~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~ 328 (582)
T 1flg_A 250 SASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDY 328 (582)
T ss_dssp CCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEE
T ss_pred CceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-Eee
Confidence 2456666677776653 2 5899999999886332222 221 1221 222
Q ss_pred e-CCCC--eEEEEEeCCCcEEEEECCCCeeEEEEecCCCe----------------------------------------
Q 004207 649 H-PSKE--DLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA---------------------------------------- 685 (768)
Q Consensus 649 s-p~g~--~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i---------------------------------------- 685 (768)
. .+|+ .+++.++.+|.|+++|.++|+.+..+.....+
T Consensus 329 ~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~ 408 (582)
T 1flg_A 329 KAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPF 408 (582)
T ss_dssp ECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCT
T ss_pred ecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCC
Confidence 2 3554 46778999999999999999988776543210
Q ss_pred ------eEEEEecCCCEEEEEEcCCeEEEEECCC----ceE------------eeecceeEEeecCCCceEEeccCCCCe
Q 004207 686 ------TQMRFQPRLGRILAAAIENYISILDVET----QVC------------RLKLQTLELWNMTENKTLTLSAHDKLV 743 (768)
Q Consensus 686 ------~sl~fsp~~~~llags~Dg~I~IwD~~t----~~~------------~~~~~~I~iwd~~~~~~~~l~~H~~~I 743 (768)
..++++|+.+.+++...+-.+.++.... +.. ......|..||+.+++.+-...+...+
T Consensus 409 ~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~ 488 (582)
T 1flg_A 409 LGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPL 488 (582)
T ss_dssp TCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCC
T ss_pred ccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCC
Confidence 1346677767777766543333332111 000 001235777787777765222222222
Q ss_pred eEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 744 SSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 744 ~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
..-.....+.+|++++.||.|+.||
T Consensus 489 ~~g~~~tagglvf~g~~dg~l~A~D 513 (582)
T 1flg_A 489 WAGVLATAGNLVFTGTGDGYFKAFD 513 (582)
T ss_dssp CSCCEEETTTEEEEECTTSEEEEEE
T ss_pred cccceEeCCCEEEEECCCCcEEEEE
Confidence 2212223467888899999999886
No 263
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.92 E-value=0.00036 Score=72.39 Aligned_cols=125 Identities=9% Similarity=0.001 Sum_probs=88.7
Q ss_pred eEEEEeccCC--CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcE
Q 004207 588 TVKSTLEEHT--QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 665 (768)
Q Consensus 588 ~~~~tl~~h~--~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I 665 (768)
+++.++. |. .....+.|+. +.++++.+.+|.|+++|+++++..... ....-....+++ +++.++++.-.++.+
T Consensus 44 ~Vv~~~p-hd~~~ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~--~g~~Ly~ltw~~~~v 118 (268)
T 3nok_A 44 HIIREYP-HATNAFTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLAS--DGERLYQLTWTEGLL 118 (268)
T ss_dssp EEEEEEE-CCTTCCEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEE--CSSCEEEEESSSCEE
T ss_pred EEEEEEc-CCCccccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEE--eCCEEEEEEccCCEE
Confidence 4455552 43 3356888873 567777788889999999998864444 322212233554 456677777789999
Q ss_pred EEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeee
Q 004207 666 RYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK 719 (768)
Q Consensus 666 ~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~ 719 (768)
.+||..+.+.+.++.....-..++ +++..|+.+..++.|.++|..+.+....
T Consensus 119 ~V~D~~Tl~~~~ti~~~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~ 170 (268)
T 3nok_A 119 FTWSGMPPQRERTTRYSGEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGA 170 (268)
T ss_dssp EEEETTTTEEEEEEECSSCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEE
T ss_pred EEEECCcCcEEEEEeCCCceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEE
Confidence 999999999999998754444454 4567888887899999999999776544
No 264
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.90 E-value=0.00082 Score=78.18 Aligned_cols=193 Identities=9% Similarity=-0.004 Sum_probs=116.8
Q ss_pred CCCcEEEEECCCCeEEEEeccCCCC-------------------------------------E-EEEEEcCCCCEEEEEe
Q 004207 575 HDKKAVLWCTESFTVKSTLEEHTQW-------------------------------------I-TDVRFSPSLSRLATSS 616 (768)
Q Consensus 575 ~Dg~I~VWdl~t~~~~~tl~~h~~~-------------------------------------V-~sl~fspdg~~LaTgs 616 (768)
.++.|+.+|.++++.+..+...... + ..+++.++..+++.+.
T Consensus 180 ~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~ 259 (599)
T 1w6s_A 180 VRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGT 259 (599)
T ss_dssp CCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEEC
T ss_pred CCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeC
Confidence 3799999999999998877532111 0 1345666777777776
Q ss_pred CC----------------CcEEEEECCCCCeeEEEeec-CC--------CCeEEEEEe-CCCC--eEEEEEeCCCcEEEE
Q 004207 617 AD----------------RTVRVWDTENPDYSLRTFTG-HS--------TTVMSLDFH-PSKE--DLLCSCDNNSEIRYW 668 (768)
Q Consensus 617 ~D----------------gtIrVWDl~t~~~~~~~~~~-h~--------~~V~slafs-p~g~--~lLaSgs~Dg~I~iW 668 (768)
.+ +.|..+|.++++..-..-.. |. .++. +... .+|+ .+++.++.+|.|+++
T Consensus 260 g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~l 338 (599)
T 1w6s_A 260 GNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTL 338 (599)
T ss_dssp CCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEE
T ss_pred CCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEE
Confidence 65 37999999998863222222 21 1121 2332 4553 567788899999999
Q ss_pred ECCCCeeEEEEecCC----------------------------------------CeeEEEEecCCCEEEEEEcCCeEEE
Q 004207 669 SINNGSCAGVFKCQS----------------------------------------GATQMRFQPRLGRILAAAIENYISI 708 (768)
Q Consensus 669 Dl~sg~~i~~~~~~~----------------------------------------~i~sl~fsp~~~~llags~Dg~I~I 708 (768)
|.++|+.+....... ....++|+|+.+.+++...+-...+
T Consensus 339 D~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~ 418 (599)
T 1w6s_A 339 DRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDW 418 (599)
T ss_dssp ETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEE
T ss_pred ECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceee
Confidence 999999887665321 0124678898888888765533322
Q ss_pred EECCC----ce--------Ee----e------ecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEE
Q 004207 709 LDVET----QV--------CR----L------KLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKI 766 (768)
Q Consensus 709 wD~~t----~~--------~~----~------~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~I 766 (768)
.-.+. +. .. . ....|..||+.+++++-...+...+..-.....+.+|+.++.||.|+.
T Consensus 419 ~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~gt~dg~l~A 498 (599)
T 1w6s_A 419 EPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKA 498 (599)
T ss_dssp EECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEE
T ss_pred ecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCccCcceEecCCEEEEECCCCeEEE
Confidence 21100 00 00 0 123677888888877633222222222122334678888999999998
Q ss_pred eC
Q 004207 767 WK 768 (768)
Q Consensus 767 WD 768 (768)
||
T Consensus 499 ~D 500 (599)
T 1w6s_A 499 RD 500 (599)
T ss_dssp EE
T ss_pred EE
Confidence 86
No 265
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.90 E-value=0.0056 Score=67.38 Aligned_cols=160 Identities=12% Similarity=-0.000 Sum_probs=106.6
Q ss_pred CCCCeEEEEEcCCCCEEEEE-eCCCcEEEEECCCC----eEEEEeccCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECC
Q 004207 554 STSKVESCHFSPDGKLLATG-GHDKKAVLWCTESF----TVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTE 627 (768)
Q Consensus 554 H~~~I~sl~fSpdg~~LaSg-s~Dg~I~VWdl~t~----~~~~tl~~h~~~V~sl~fspd-g~~LaTgs~DgtIrVWDl~ 627 (768)
.-..+..|+|++.+..|+.+ ...+.|+.+++... .....+.........|++.+. ++++++-...+.|.+.+++
T Consensus 110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~ 189 (400)
T 3p5b_L 110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 189 (400)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCC
Confidence 34568899999866655544 45678999988752 233333334456789999884 4455555567899999988
Q ss_pred CCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeC-CCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEEc-CC
Q 004207 628 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN-NSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAI-EN 704 (768)
Q Consensus 628 t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~-Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags~-Dg 704 (768)
.... ...+.........|+++|.+..++++-.. .+.|...++........+.. -.....|+++++++.|+.+.. .+
T Consensus 190 g~~~-~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~ 268 (400)
T 3p5b_L 190 GVKR-KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLH 268 (400)
T ss_dssp TCSE-EEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred CCce-EEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCC
Confidence 6443 33333344568899999987777766533 47899999874333333322 245788999998888888764 56
Q ss_pred eEEEEECCCc
Q 004207 705 YISILDVETQ 714 (768)
Q Consensus 705 ~I~IwD~~t~ 714 (768)
.|..+|+...
T Consensus 269 ~I~~~d~dG~ 278 (400)
T 3p5b_L 269 SISSIDVNGG 278 (400)
T ss_dssp EEEEEETTSC
T ss_pred EEEEEeCCCC
Confidence 7888888653
No 266
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=97.88 E-value=0.0092 Score=71.37 Aligned_cols=150 Identities=8% Similarity=-0.010 Sum_probs=101.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEec----cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q 004207 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE----EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 630 (768)
Q Consensus 555 ~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~----~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~ 630 (768)
...|.+++..+++.+|.+|+.++-|.+||..+++...... .+...|.++...+++.+.+.. .+ .|.+||..++.
T Consensus 405 ~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~~-Gl~~~~~~~~~ 482 (795)
T 4a2l_A 405 SNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGT-LS-ALVRFNPEQRS 482 (795)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE-SS-CEEEEETTTTE
T ss_pred CccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe-cC-ceeEEeCCCCe
Confidence 3569999998888856677777789999998876554322 234579999998888755544 44 58899988754
Q ss_pred eeEEEeec-------CCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEe--------cCCCeeEEEEecCCC
Q 004207 631 YSLRTFTG-------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--------CQSGATQMRFQPRLG 695 (768)
Q Consensus 631 ~~~~~~~~-------h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~--------~~~~i~sl~fsp~~~ 695 (768)
. ..+.. ....|.++...+++...+ |+. +.|.+||..++.. .+. ....|.++...+++.
T Consensus 483 ~--~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi--gt~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~ 555 (795)
T 4a2l_A 483 F--TTIEKEKDGTPVVSKQITTLFRDSHKRLWI--GGE-EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGI 555 (795)
T ss_dssp E--EECCBCTTCCBCCCCCEEEEEECTTCCEEE--EES-SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSC
T ss_pred E--EEccccccccccCCceEEEEEECCCCCEEE--EeC-CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCC
Confidence 3 22221 235789999988876444 333 4688899877765 222 124578888888765
Q ss_pred EEEEEEcCCeEEEEECCCce
Q 004207 696 RILAAAIENYISILDVETQV 715 (768)
Q Consensus 696 ~llags~Dg~I~IwD~~t~~ 715 (768)
+.+++.. .|..||..+..
T Consensus 556 -lWigT~~-Gl~~~d~~~~~ 573 (795)
T 4a2l_A 556 -IWVGTRE-GFYCFNEKDKQ 573 (795)
T ss_dssp -EEEEESS-CEEEEETTTTE
T ss_pred -EEEEeCC-CceeECCCCCc
Confidence 4555554 67888876654
No 267
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.86 E-value=0.0043 Score=66.87 Aligned_cols=153 Identities=8% Similarity=0.003 Sum_probs=100.9
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEE-eCCCcEEEEECCCCCeeEEE
Q 004207 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTENPDYSLRT 635 (768)
Q Consensus 557 ~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTg-s~DgtIrVWDl~t~~~~~~~ 635 (768)
..+|.+..++. +|+.+ ....|+..++........+.. ...+..++|++....|+.+ ...+.|+.++++.... ...
T Consensus 35 ~~~C~~~~~~~-~ll~~-~~~~I~~i~~~g~~~~~~~~~-~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~-~~~ 110 (349)
T 3v64_C 35 RRSCKALGPEP-VLLFA-NRIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV-EEV 110 (349)
T ss_dssp SSCEEESSSCC-EEEEE-CBSCEEEECTTSCCEEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEE
T ss_pred CCcccccccCc-eeEee-cccceEEEeCCCCeeEEeecC-CCceEEEEEeccccEEEEEeccCCceEEEecCCCCc-eEE
Confidence 34566655533 44443 345688888877655544443 3458899999865555544 4678899999986553 222
Q ss_pred eecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEEcC--CeEEEEECC
Q 004207 636 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIE--NYISILDVE 712 (768)
Q Consensus 636 ~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags~D--g~I~IwD~~ 712 (768)
..........+++++.+..++++-...+.|.++++........+.. ......++++|.++.|+.+... +.|..+++.
T Consensus 111 ~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~d 190 (349)
T 3v64_C 111 VSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD 190 (349)
T ss_dssp ECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred EeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCC
Confidence 3323345678999987777887877788999999875443333322 3457889999988887777643 667777765
Q ss_pred C
Q 004207 713 T 713 (768)
Q Consensus 713 t 713 (768)
.
T Consensus 191 G 191 (349)
T 3v64_C 191 G 191 (349)
T ss_dssp S
T ss_pred C
Confidence 4
No 268
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.86 E-value=0.00048 Score=71.32 Aligned_cols=126 Identities=11% Similarity=0.075 Sum_probs=87.7
Q ss_pred eEEEEeccCCC--CEEEEEEcCCCCEEEEEeCCC--cEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCC
Q 004207 588 TVKSTLEEHTQ--WITDVRFSPSLSRLATSSADR--TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 663 (768)
Q Consensus 588 ~~~~tl~~h~~--~V~sl~fspdg~~LaTgs~Dg--tIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg 663 (768)
+++.++ .|.. ....+.|+ ++.++.+.+.+| .|+++|+++++. +..+.-. ..+......++++.++++.-.++
T Consensus 32 ~vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv-~~~~~l~-~~~FgeGit~~g~~ly~ltw~~~ 107 (262)
T 3nol_A 32 QIVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKT-LQQIELG-KRYFGEGISDWKDKIVGLTWKNG 107 (262)
T ss_dssp EEEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCE-EEEEECC-TTCCEEEEEEETTEEEEEESSSS
T ss_pred EEEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcE-EEEEecC-CccceeEEEEeCCEEEEEEeeCC
Confidence 455566 3443 35788898 666667777766 899999999886 3333322 23333323334567777777799
Q ss_pred cEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeee
Q 004207 664 EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK 719 (768)
Q Consensus 664 ~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~ 719 (768)
.+.+||..+.+.+.++.....-..++ +++..|+.+..++.|.++|..+.+....
T Consensus 108 ~v~v~D~~t~~~~~ti~~~~eG~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~~~ 161 (262)
T 3nol_A 108 LGFVWNIRNLRQVRSFNYDGEGWGLT--HNDQYLIMSDGTPVLRFLDPESLTPVRT 161 (262)
T ss_dssp EEEEEETTTCCEEEEEECSSCCCCEE--ECSSCEEECCSSSEEEEECTTTCSEEEE
T ss_pred EEEEEECccCcEEEEEECCCCceEEe--cCCCEEEEECCCCeEEEEcCCCCeEEEE
Confidence 99999999999999998754333444 5667777777788899999998766544
No 269
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=97.77 E-value=0.0011 Score=76.51 Aligned_cols=158 Identities=14% Similarity=0.104 Sum_probs=105.5
Q ss_pred EEEEcCCCCEEEEEeCC----------------CcEEEEECCCCeEEEEecc--CC--------CCEEEEEEcCCCC---
Q 004207 560 SCHFSPDGKLLATGGHD----------------KKAVLWCTESFTVKSTLEE--HT--------QWITDVRFSPSLS--- 610 (768)
Q Consensus 560 sl~fSpdg~~LaSgs~D----------------g~I~VWdl~t~~~~~tl~~--h~--------~~V~sl~fspdg~--- 610 (768)
.+++.++...|+.+..+ +.|..+|.++++.+..+.. |. .++. +....+++
T Consensus 239 ~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~ 317 (571)
T 2ad6_A 239 WYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTP 317 (571)
T ss_dssp CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEE
T ss_pred eEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEE
Confidence 35666766666666532 3599999999999887753 21 2221 22224663
Q ss_pred EEEEEeCCCcEEEEECCCCCeeEEEeecC------------CCCe--------------------------EEEEEeCCC
Q 004207 611 RLATSSADRTVRVWDTENPDYSLRTFTGH------------STTV--------------------------MSLDFHPSK 652 (768)
Q Consensus 611 ~LaTgs~DgtIrVWDl~t~~~~~~~~~~h------------~~~V--------------------------~slafsp~g 652 (768)
.++.++.+|.|+++|.++++..-..-... ..++ ..++++|+.
T Consensus 318 ~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~ 397 (571)
T 2ad6_A 318 LLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPES 397 (571)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT
T ss_pred EEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCC
Confidence 57788899999999999987532222111 0111 235778877
Q ss_pred CeEEEEEe------------------------------------CCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCE
Q 004207 653 EDLLCSCD------------------------------------NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGR 696 (768)
Q Consensus 653 ~~lLaSgs------------------------------------~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~ 696 (768)
..+++.+. .++.|..||+.+++.+..+.....+....+...++.
T Consensus 398 g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~ 477 (571)
T 2ad6_A 398 RTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGL 477 (571)
T ss_dssp TEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTE
T ss_pred CEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCCccceeEEECCCE
Confidence 65554432 357899999999999888876555444444445678
Q ss_pred EEEEEcCCeEEEEECCCceEee
Q 004207 697 ILAAAIENYISILDVETQVCRL 718 (768)
Q Consensus 697 llags~Dg~I~IwD~~t~~~~~ 718 (768)
+++++.|+.|+.||.++++...
T Consensus 478 v~~g~~dg~l~a~D~~tG~~lw 499 (571)
T 2ad6_A 478 VWYATLDGYLKALDNKDGKELW 499 (571)
T ss_dssp EEEECTTSEEEEEETTTCCEEE
T ss_pred EEEEcCCCeEEEEECCCCCEEE
Confidence 8889999999999999987653
No 270
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.74 E-value=0.002 Score=75.55 Aligned_cols=76 Identities=12% Similarity=0.113 Sum_probs=50.5
Q ss_pred CCCeEEEEEcCCCCEEEEEeC-CCcEEEEECCCCeEEEEeccCCC-CEEEEEEcCCCCEEEEEe-CC-----CcEEEEEC
Q 004207 555 TSKVESCHFSPDGKLLATGGH-DKKAVLWCTESFTVKSTLEEHTQ-WITDVRFSPSLSRLATSS-AD-----RTVRVWDT 626 (768)
Q Consensus 555 ~~~I~sl~fSpdg~~LaSgs~-Dg~I~VWdl~t~~~~~tl~~h~~-~V~sl~fspdg~~LaTgs-~D-----gtIrVWDl 626 (768)
.....++++..+++++++|+. +..+.+||..+.+-...-..+.. .-.++++.+++++++.|+ .+ ..+.+||.
T Consensus 242 ~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~ 321 (656)
T 1k3i_A 242 DMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSP 321 (656)
T ss_dssp CCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEET
T ss_pred CCccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCC
Confidence 334456778889999999884 45799999887653322111111 123455667889998888 44 46899998
Q ss_pred CCCC
Q 004207 627 ENPD 630 (768)
Q Consensus 627 ~t~~ 630 (768)
.+..
T Consensus 322 ~t~~ 325 (656)
T 1k3i_A 322 SSKT 325 (656)
T ss_dssp TTTE
T ss_pred CCCc
Confidence 7654
No 271
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.73 E-value=0.0057 Score=66.91 Aligned_cols=152 Identities=8% Similarity=-0.001 Sum_probs=99.9
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCCeeEEEe
Q 004207 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADRTVRVWDTENPDYSLRTF 636 (768)
Q Consensus 558 I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~La-Tgs~DgtIrVWDl~t~~~~~~~~ 636 (768)
.+|.+..+ ..+|+.+ ....|+.+++........+.. ...+..++|++....|+ +-...+.|+.++++.... ...+
T Consensus 79 ~~C~~~~~-~~~l~~~-~~~~I~~i~~~~~~~~~~~~~-~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~-~~~~ 154 (386)
T 3v65_B 79 RSCKALGP-EPVLLFA-NRIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV-EEVV 154 (386)
T ss_dssp SCEEECSS-CCEEEEE-CBSCEEEECTTSCCCEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCE-EEEE
T ss_pred CeECCccc-cceeEee-cCccceeeccCCCcEEEEecC-CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCc-EEEE
Confidence 34555544 3344444 345788899887665544443 34588999998655554 445677899999986543 2333
Q ss_pred ecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEEcC--CeEEEEECCC
Q 004207 637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIE--NYISILDVET 713 (768)
Q Consensus 637 ~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags~D--g~I~IwD~~t 713 (768)
.........|++++.+..++++-...+.|.++++........+.. ......++++|.+++|+.+... +.|..+++..
T Consensus 155 ~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG 234 (386)
T 3v65_B 155 STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG 234 (386)
T ss_dssp CSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred eCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCC
Confidence 323345678899987777887877788999999875443333332 3457889999988888777643 5677777654
No 272
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.73 E-value=0.0032 Score=70.19 Aligned_cols=117 Identities=10% Similarity=0.133 Sum_probs=71.6
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCC---Cc-EEEEECCCCeE-EEEeccCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECC
Q 004207 554 STSKVESCHFSPDGKLLATGGHD---KK-AVLWCTESFTV-KSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTE 627 (768)
Q Consensus 554 H~~~I~sl~fSpdg~~LaSgs~D---g~-I~VWdl~t~~~-~~tl~~h~~~V~sl~fsp-dg~~LaTgs~DgtIrVWDl~ 627 (768)
......+|+|+++|+++++.... .. +..++...... ...+. .......++++| ++.++++-..++.|+.+|..
T Consensus 180 ~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~ 258 (433)
T 4hw6_A 180 NIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPA 258 (433)
T ss_dssp CCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTT
T ss_pred CCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECC
Confidence 44568999999999944444321 12 33333222111 11121 223456788999 66666666667889999998
Q ss_pred CCCeeEEEee-cCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECC
Q 004207 628 NPDYSLRTFT-GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 671 (768)
Q Consensus 628 t~~~~~~~~~-~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~ 671 (768)
++......+. +.......|+|+|+++.++++-...+.|+.+|..
T Consensus 259 ~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d 303 (433)
T 4hw6_A 259 TGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYN 303 (433)
T ss_dssp TCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBC
T ss_pred CCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence 6654122222 1222345799999998788777778899998865
No 273
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.71 E-value=0.0024 Score=65.41 Aligned_cols=125 Identities=12% Similarity=0.029 Sum_probs=87.6
Q ss_pred eEEEEeccCC--CCEEEEEEcCCCCEEEEEeCCC--cEEEEECCCCCeeEEEeecCCC-CeEEEEEeCCCCeEEEEEeCC
Q 004207 588 TVKSTLEEHT--QWITDVRFSPSLSRLATSSADR--TVRVWDTENPDYSLRTFTGHST-TVMSLDFHPSKEDLLCSCDNN 662 (768)
Q Consensus 588 ~~~~tl~~h~--~~V~sl~fspdg~~LaTgs~Dg--tIrVWDl~t~~~~~~~~~~h~~-~V~slafsp~g~~lLaSgs~D 662 (768)
+++.++ .|. .....+.|+. +.++.+.+.+| .|+++|+.+++. +....-... .-..+++. ++.++...-.+
T Consensus 10 ~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv-~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~ 84 (243)
T 3mbr_X 10 RVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRI-LQRAEVPPPYFGAGIVAW--RDRLIQLTWRN 84 (243)
T ss_dssp EEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCE-EEEEECCTTCCEEEEEEE--TTEEEEEESSS
T ss_pred EEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCE-EEEEeCCCCcceeEEEEe--CCEEEEEEeeC
Confidence 455565 354 3466899986 45566666654 899999999886 443332211 22334444 56777777789
Q ss_pred CcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeee
Q 004207 663 SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK 719 (768)
Q Consensus 663 g~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~ 719 (768)
+.+.+||..+.+.+.++.....-..++ +++..|+++..++.|.++|..+.+....
T Consensus 85 ~~v~v~D~~tl~~~~ti~~~~~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~ 139 (243)
T 3mbr_X 85 HEGFVYDLATLTPRARFRYPGEGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGS 139 (243)
T ss_dssp SEEEEEETTTTEEEEEEECSSCCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEE
T ss_pred CEEEEEECCcCcEEEEEeCCCCceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEE
Confidence 999999999999999998755444444 5567788877889999999999776544
No 274
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.65 E-value=0.00022 Score=83.72 Aligned_cols=115 Identities=9% Similarity=0.114 Sum_probs=73.2
Q ss_pred EEEEcC-CCCEEEEEeCCC-----------cEEEEECCCCeE--EEEe-ccCCCCEEEEEEcCCCCEEEEEeC-CCcEEE
Q 004207 560 SCHFSP-DGKLLATGGHDK-----------KAVLWCTESFTV--KSTL-EEHTQWITDVRFSPSLSRLATSSA-DRTVRV 623 (768)
Q Consensus 560 sl~fSp-dg~~LaSgs~Dg-----------~I~VWdl~t~~~--~~tl-~~h~~~V~sl~fspdg~~LaTgs~-DgtIrV 623 (768)
++++.+ ++++++.|+.+. .+.+||..+++- +..+ ..+.....++++..+++++++|+. +..+++
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 556677 888888887643 588999887653 2222 223333446788889999999985 458999
Q ss_pred EECCCCCeeEEEeecCC-CCeEEEEEeCCCCeEEEEEe-CC-----CcEEEEECCCCeeE
Q 004207 624 WDTENPDYSLRTFTGHS-TTVMSLDFHPSKEDLLCSCD-NN-----SEIRYWSINNGSCA 676 (768)
Q Consensus 624 WDl~t~~~~~~~~~~h~-~~V~slafsp~g~~lLaSgs-~D-----g~I~iWDl~sg~~i 676 (768)
||..+...... -..+. ..-.++++.++++ +++.|+ .+ ..+.+||..+.+..
T Consensus 270 yd~~t~~W~~~-~~~~~~R~~~s~~~~~dg~-iyv~GG~~~~~~~~~~~e~yd~~t~~W~ 327 (656)
T 1k3i_A 270 YDSSSDSWIPG-PDMQVARGYQSSATMSDGR-VFTIGGSWSGGVFEKNGEVYSPSSKTWT 327 (656)
T ss_dssp EEGGGTEEEEC-CCCSSCCSSCEEEECTTSC-EEEECCCCCSSSCCCCEEEEETTTTEEE
T ss_pred ecCcCCceeEC-CCCCccccccceEEecCCe-EEEEeCcccCCcccccceEeCCCCCcce
Confidence 99987653211 11111 1223455666766 666666 34 56999999877643
No 275
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.64 E-value=0.012 Score=60.69 Aligned_cols=154 Identities=10% Similarity=0.115 Sum_probs=107.0
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE---EEEec------cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004207 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV---KSTLE------EHTQWITDVRFSPSLSRLATSSADRTVRVWDT 626 (768)
Q Consensus 556 ~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~---~~tl~------~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl 626 (768)
.....|++.+++.++++.-.++.+.++++..... +.... ..+.....|+|+|.+..|+++.......||.+
T Consensus 70 ~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~ 149 (255)
T 3qqz_A 70 KDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKV 149 (255)
T ss_dssp SSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEE
T ss_pred CChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEE
Confidence 4578888988888777766778899998765432 22221 13445789999999877777776655555555
Q ss_pred CC--CCeeEEEee-------cCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCC----------CeeE
Q 004207 627 EN--PDYSLRTFT-------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS----------GATQ 687 (768)
Q Consensus 627 ~t--~~~~~~~~~-------~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~----------~i~s 687 (768)
+. ....+..+. .+...+.+++++|...++++....+..|.++|.. ++.+..+.... ....
T Consensus 150 ~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEG 228 (255)
T 3qqz_A 150 NGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEG 228 (255)
T ss_dssp ESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEE
T ss_pred cccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCe
Confidence 41 111122221 1334679999999988999999999999999976 66776666532 4578
Q ss_pred EEEecCCCEEEEEEcCCeEEEEEC
Q 004207 688 MRFQPRLGRILAAAIENYISILDV 711 (768)
Q Consensus 688 l~fsp~~~~llags~Dg~I~IwD~ 711 (768)
|+|.++|+ ++.++..+.+++|..
T Consensus 229 ia~d~~G~-lyIvsE~n~~y~f~~ 251 (255)
T 3qqz_A 229 VAMDASGN-IYIVSEPNRFYRFTP 251 (255)
T ss_dssp EEECTTCC-EEEEETTTEEEEEEC
T ss_pred eEECCCCC-EEEEcCCceEEEEEe
Confidence 99999986 666688887777754
No 276
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.63 E-value=0.013 Score=62.28 Aligned_cols=206 Identities=12% Similarity=0.083 Sum_probs=109.9
Q ss_pred CceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEE-EEeccCCCCEEEEEEcCCCCEEEEEeCCCc
Q 004207 542 GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK-STLEEHTQWITDVRFSPSLSRLATSSADRT 620 (768)
Q Consensus 542 ~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~-~tl~~h~~~V~sl~fspdg~~LaTgs~Dgt 620 (768)
+.++..+.....+.+.+.+|.+.+++..++++ .++.|..- .+.++.- .....+...+.++++.+++.+++++...+.
T Consensus 108 G~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~S-~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~ 185 (327)
T 2xbg_A 108 GQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYRT-KDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSF 185 (327)
T ss_dssp TSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEEE-SSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSE
T ss_pred CCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEEE-cCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcE
Confidence 34444443322334557888887777666655 45654332 2223222 222344567899999999887776644433
Q ss_pred EEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-----CCCeeEEEEecCCC
Q 004207 621 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-----QSGATQMRFQPRLG 695 (768)
Q Consensus 621 IrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-----~~~i~sl~fsp~~~ 695 (768)
.+-+|-..... ..........+..+.+.+++. ++ .++.+|.|++.+...++.-..+.. ...+..+.+.+++.
T Consensus 186 ~~S~d~gG~tW-~~~~~~~~~~~~~~~~~~~g~-~~-~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~ 262 (327)
T 2xbg_A 186 YSTWEPGQTAW-EPHNRTTSRRLHNMGFTPDGR-LW-MIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNE 262 (327)
T ss_dssp EEEECTTCSSC-EEEECCSSSCEEEEEECTTSC-EE-EEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSC
T ss_pred EEEeCCCCCce-eECCCCCCCccceeEECCCCC-EE-EEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCE
Confidence 33344311111 112233456789999998875 44 344578777764332332222221 13477888888654
Q ss_pred EEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 696 RILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 696 ~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
+++++.++.|. +....+.. |.... ....+...+.+|.|.++ ..+++++.+|.|.-++
T Consensus 263 -~~~~g~~g~i~-~S~DgG~t---------W~~~~----~~~~~~~~~~~v~~~~~-~~~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 263 -VWLAGGAGALL-CSQDGGQT---------WQQDV----DVKKVPSNFYKILFFSP-DQGFILGQKGILLRYV 319 (327)
T ss_dssp -EEEEESTTCEE-EESSTTSS---------CEECG----GGTTSSSCCCEEEEEET-TEEEEECSTTEEEEEC
T ss_pred -EEEEeCCCeEE-EeCCCCcc---------cEEcC----ccCCCCCCeEEEEEECC-CceEEEcCCceEEEEc
Confidence 55566677653 22222211 11000 00012345788888754 4566777889887654
No 277
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.62 E-value=0.0045 Score=68.96 Aligned_cols=153 Identities=10% Similarity=0.050 Sum_probs=97.6
Q ss_pred CeEEEEEcCC--CCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCC-----cEEEEECCCC
Q 004207 557 KVESCHFSPD--GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR-----TVRVWDTENP 629 (768)
Q Consensus 557 ~I~sl~fSpd--g~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~Dg-----tIrVWDl~t~ 629 (768)
...+|+|+|+ ...|+++...+.|+.+|..++...... .......+|+|+++++ |+.+...+ .+..++....
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCC
Confidence 4578999984 445555544489999999887766544 3445689999999999 44444322 2333333322
Q ss_pred CeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEE-ec--CCCeeEEEEecCCCEEEEEE-cCCe
Q 004207 630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-KC--QSGATQMRFQPRLGRILAAA-IENY 705 (768)
Q Consensus 630 ~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~-~~--~~~i~sl~fsp~~~~llags-~Dg~ 705 (768)
......+. .......++++|+...++++...++.|+.+|..++.....+ .. ......++|+|++++|+++. ..+.
T Consensus 218 ~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~ 296 (433)
T 4hw6_A 218 FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHC 296 (433)
T ss_dssp TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTE
T ss_pred eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCE
Confidence 11011222 23456778999954557766667789999999877763332 22 12234699999999776666 4678
Q ss_pred EEEEECC
Q 004207 706 ISILDVE 712 (768)
Q Consensus 706 I~IwD~~ 712 (768)
|..++..
T Consensus 297 I~~~~~d 303 (433)
T 4hw6_A 297 IYRVDYN 303 (433)
T ss_dssp EEEEEBC
T ss_pred EEEEeCC
Confidence 9988765
No 278
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.61 E-value=0.012 Score=62.67 Aligned_cols=155 Identities=8% Similarity=-0.037 Sum_probs=102.0
Q ss_pred CeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeE-EEEeccCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCeeE
Q 004207 557 KVESCHFSPDGK-LLATGGHDKKAVLWCTESFTV-KSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSL 633 (768)
Q Consensus 557 ~I~sl~fSpdg~-~LaSgs~Dg~I~VWdl~t~~~-~~tl~~h~~~V~sl~fspd-g~~LaTgs~DgtIrVWDl~t~~~~~ 633 (768)
.+.+++|++.+. ++++-...+.|..++...... ...+...-.....+++.+. +.++++-...+.|.+++++.... .
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~-~ 114 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR-K 114 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC-E
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcE-E
Confidence 367899998554 445555678899999876532 1222222234678899875 44555555678999999875432 2
Q ss_pred EEeecCCCCeEEEEEeCCCCeEEEEEe-CCCcEEEEECCCCeeEEEE-ec-CCCeeEEEEecCCCEEEEEEc-CCeEEEE
Q 004207 634 RTFTGHSTTVMSLDFHPSKEDLLCSCD-NNSEIRYWSINNGSCAGVF-KC-QSGATQMRFQPRLGRILAAAI-ENYISIL 709 (768)
Q Consensus 634 ~~~~~h~~~V~slafsp~g~~lLaSgs-~Dg~I~iWDl~sg~~i~~~-~~-~~~i~sl~fsp~~~~llags~-Dg~I~Iw 709 (768)
............|+++|.+..++++-. ..+.|..+++.. .....+ .. -.....++|+++++.|+.+.. .+.|..+
T Consensus 115 ~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG-~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~ 193 (318)
T 3sov_A 115 VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG-SSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKS 193 (318)
T ss_dssp EEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTS-CSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred EEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCC-CCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEE
Confidence 223334456789999998777776653 357888888863 333333 22 234678999998888887764 5778888
Q ss_pred ECCC
Q 004207 710 DVET 713 (768)
Q Consensus 710 D~~t 713 (768)
|+..
T Consensus 194 d~dG 197 (318)
T 3sov_A 194 NLDG 197 (318)
T ss_dssp ETTS
T ss_pred cCCC
Confidence 8864
No 279
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.61 E-value=0.0044 Score=71.77 Aligned_cols=159 Identities=11% Similarity=0.041 Sum_probs=104.6
Q ss_pred EEEEcCCCCEEEEEeC--------------------C----CcEEEEECCCCeEEEEecc--CC--------CCEEEEEE
Q 004207 560 SCHFSPDGKLLATGGH--------------------D----KKAVLWCTESFTVKSTLEE--HT--------QWITDVRF 605 (768)
Q Consensus 560 sl~fSpdg~~LaSgs~--------------------D----g~I~VWdl~t~~~~~tl~~--h~--------~~V~sl~f 605 (768)
.+++.++..+|+++.. | +.|..+|.++++.+..+.. |. .++. +..
T Consensus 250 ~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~ 328 (582)
T 1flg_A 250 SASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDY 328 (582)
T ss_dssp CCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEE
T ss_pred CceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-Eee
Confidence 4677777777776653 2 5899999999999988743 32 1221 222
Q ss_pred c-CCCC---EEEEEeCCCcEEEEECCCCCeeEEEeecC------------CCC---------------------------
Q 004207 606 S-PSLS---RLATSSADRTVRVWDTENPDYSLRTFTGH------------STT--------------------------- 642 (768)
Q Consensus 606 s-pdg~---~LaTgs~DgtIrVWDl~t~~~~~~~~~~h------------~~~--------------------------- 642 (768)
. .+++ .++.++.+|.|+++|.++++..-..-... ..+
T Consensus 329 ~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~ 408 (582)
T 1flg_A 329 KAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPF 408 (582)
T ss_dssp ECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCT
T ss_pred ecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCC
Confidence 2 4564 78889999999999999887532221111 000
Q ss_pred -----eEEEEEeCCCCeEEEEEe--------------------------------CCCcEEEEECCCCeeEEEEecCCCe
Q 004207 643 -----VMSLDFHPSKEDLLCSCD--------------------------------NNSEIRYWSINNGSCAGVFKCQSGA 685 (768)
Q Consensus 643 -----V~slafsp~g~~lLaSgs--------------------------------~Dg~I~iWDl~sg~~i~~~~~~~~i 685 (768)
-..++++|+...+++... .+|.|..||+.+++.+..+.....+
T Consensus 409 ~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~ 488 (582)
T 1flg_A 409 LGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPL 488 (582)
T ss_dssp TCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCC
T ss_pred ccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCC
Confidence 013456666554443221 2578999999999998887765444
Q ss_pred eEEEEecCCCEEEEEEcCCeEEEEECCCceEeee
Q 004207 686 TQMRFQPRLGRILAAAIENYISILDVETQVCRLK 719 (768)
Q Consensus 686 ~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~ 719 (768)
..-.....++.+++++.|+.|+.||.++++.+..
T Consensus 489 ~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~ 522 (582)
T 1flg_A 489 WAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWK 522 (582)
T ss_dssp CSCCEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred cccceEeCCCEEEEECCCCcEEEEECCCCCEEEE
Confidence 3322333467888899999999999999876543
No 280
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.57 E-value=0.02 Score=62.98 Aligned_cols=143 Identities=8% Similarity=-0.020 Sum_probs=96.3
Q ss_pred EEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEE-eCCCcEEEEECCCCC---eeEEEeecCCCCeE
Q 004207 569 LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTENPD---YSLRTFTGHSTTVM 644 (768)
Q Consensus 569 ~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTg-s~DgtIrVWDl~t~~---~~~~~~~~h~~~V~ 644 (768)
+|+.+. ...|+..+++.......+. ....+..|+|++....|+.+ ...+.|+.++++... .....+........
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 162 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 162 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred eeEEec-cceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence 444443 4689999988765554443 44568999999865555554 456789999987521 11233333445678
Q ss_pred EEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEe-cCCCeeEEEEecCCCEEEEEEc--CCeEEEEECCC
Q 004207 645 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAI--ENYISILDVET 713 (768)
Q Consensus 645 slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~-~~~~i~sl~fsp~~~~llags~--Dg~I~IwD~~t 713 (768)
.|++.+.+..++++-...+.|.+.|+........+. .......++++|.+++|+.+.. .+.|..+++..
T Consensus 163 glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG 234 (400)
T 3p5b_L 163 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG 234 (400)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTS
T ss_pred cEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCC
Confidence 999998777788887778899999998654444443 2345789999998888887763 36777777765
No 281
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.55 E-value=0.02 Score=68.69 Aligned_cols=160 Identities=13% Similarity=0.018 Sum_probs=105.4
Q ss_pred CCCCeEEEEEcCCCCE-EEEEeCCCcEEEEECCCC----eEEEEeccCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEECC
Q 004207 554 STSKVESCHFSPDGKL-LATGGHDKKAVLWCTESF----TVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTE 627 (768)
Q Consensus 554 H~~~I~sl~fSpdg~~-LaSgs~Dg~I~VWdl~t~----~~~~tl~~h~~~V~sl~fspdg~~L-aTgs~DgtIrVWDl~ 627 (768)
....+..|+|.+.... +++-...+.|+.+++... .....+.........|++.+.+..| ++-...+.|.+.+++
T Consensus 422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ld 501 (791)
T 3m0c_C 422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 501 (791)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCC
Confidence 3456889999985554 445555678999988753 2233333344556789998876544 455567899999998
Q ss_pred CCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCC-CcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEEc-CC
Q 004207 628 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-SEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAI-EN 704 (768)
Q Consensus 628 t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~D-g~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags~-Dg 704 (768)
.... ...+.........|+++|.+..|+++-..+ +.|.+.++........+.. -.....|++++..+.|+++.. .+
T Consensus 502 G~~~-~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~ 580 (791)
T 3m0c_C 502 GVKR-KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLH 580 (791)
T ss_dssp SSSE-EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred CCeE-EEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCC
Confidence 5443 333333445689999999877777665433 7899999874433333332 245788999988888888764 46
Q ss_pred eEEEEECCCc
Q 004207 705 YISILDVETQ 714 (768)
Q Consensus 705 ~I~IwD~~t~ 714 (768)
.|..+++...
T Consensus 581 ~I~~~d~dG~ 590 (791)
T 3m0c_C 581 SISSIDVNGG 590 (791)
T ss_dssp EEEEEETTSC
T ss_pred cEEEEecCCC
Confidence 7888888654
No 282
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.54 E-value=0.0075 Score=68.19 Aligned_cols=154 Identities=14% Similarity=0.147 Sum_probs=99.9
Q ss_pred CeEEEEEcC-CCCEEEEE-eCCCcEEEEECCCCeEEEEeccC---CCCEEEEEE-------cCCCCEEEEEeCCC-----
Q 004207 557 KVESCHFSP-DGKLLATG-GHDKKAVLWCTESFTVKSTLEEH---TQWITDVRF-------SPSLSRLATSSADR----- 619 (768)
Q Consensus 557 ~I~sl~fSp-dg~~LaSg-s~Dg~I~VWdl~t~~~~~tl~~h---~~~V~sl~f-------spdg~~LaTgs~Dg----- 619 (768)
....|+|+| +...|+++ ...+.|++.|++++.+...+... ......|+| ++++.+|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 356899998 34444444 44467899999887766554332 235899999 99999777776654
Q ss_pred --cEEEEECCC-CCee----EEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECC-------CCee----------
Q 004207 620 --TVRVWDTEN-PDYS----LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-------NGSC---------- 675 (768)
Q Consensus 620 --tIrVWDl~t-~~~~----~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~-------sg~~---------- 675 (768)
.|.+++... +... ...+... .....++++|++..|+++...++.|..+|+. ++..
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g 298 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN 298 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred CceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence 266666443 2221 0222222 2345788999777788888888999999987 5543
Q ss_pred -EEE-Eec--CCCeeEEEEecCCCEEEEEE-cCCeEEEEEC
Q 004207 676 -AGV-FKC--QSGATQMRFQPRLGRILAAA-IENYISILDV 711 (768)
Q Consensus 676 -i~~-~~~--~~~i~sl~fsp~~~~llags-~Dg~I~IwD~ 711 (768)
... +.. ......++|+|++++|+++. ....|+.+|.
T Consensus 299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~ 339 (496)
T 3kya_A 299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDY 339 (496)
T ss_dssp TEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred ccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEec
Confidence 112 222 23457899999999766665 4567887553
No 283
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=97.54 E-value=0.0097 Score=71.03 Aligned_cols=192 Identities=9% Similarity=0.017 Sum_probs=120.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEe---ccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCe
Q 004207 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL---EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY 631 (768)
Q Consensus 555 ~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl---~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~ 631 (768)
...|.+++..++|.+. +|+.++-|.+||..++...... ......|.++...+++.+ ..|+.++.|.+||..++..
T Consensus 362 ~~~v~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~~ 439 (781)
T 3v9f_A 362 NKVVSSVCDDGQGKLW-IGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNL-WFGTYLGNISYYNTRLKKF 439 (781)
T ss_dssp SSCEEEEEECTTSCEE-EEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCE-EEEETTEEEEEECSSSCEE
T ss_pred CcceEEEEEcCCCCEE-EEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCE-EEEeccCCEEEEcCCCCcE
Confidence 3569999998877644 5555666999997754432211 123467999998887764 4567777799999876543
Q ss_pred eEEEee---cCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec------CCCeeEEEEecCCCEEEEEEc
Q 004207 632 SLRTFT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC------QSGATQMRFQPRLGRILAAAI 702 (768)
Q Consensus 632 ~~~~~~---~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~------~~~i~sl~fsp~~~~llags~ 702 (768)
..+. .....|.++...+++. +. .|+. +.|.+||..+++....... ...|.++...+++. |.+++.
T Consensus 440 --~~~~~~~~~~~~v~~i~~d~~g~-lw-igt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~-lWigt~ 513 (781)
T 3v9f_A 440 --QIIELEKNELLDVRVFYEDKNKK-IW-IGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGR-FWIGTF 513 (781)
T ss_dssp --EECCSTTTCCCCEEEEEECTTSE-EE-EEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCC-EEEEES
T ss_pred --EEeccCCCCCCeEEEEEECCCCC-EE-EEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCC-EEEEEc
Confidence 2332 1346789998887765 43 3444 5688999887665443322 24578888888755 666666
Q ss_pred CCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 703 ENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 703 Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
++.|..||..+..... +....+ -....|.++...+++.+.++ +.+|.|..||
T Consensus 514 ~~Gl~~~~~~~~~~~~-------~~~~~~------l~~~~i~~i~~d~~g~lWi~-T~~Glv~~~d 565 (781)
T 3v9f_A 514 GGGVGIYTPDMQLVRK-------FNQYEG------FCSNTINQIYRSSKGQMWLA-TGEGLVCFPS 565 (781)
T ss_dssp SSCEEEECTTCCEEEE-------ECTTTT------CSCSCEEEEEECTTSCEEEE-ETTEEEEESC
T ss_pred CCCEEEEeCCCCeEEE-------ccCCCC------CCCCeeEEEEECCCCCEEEE-ECCCceEEEC
Confidence 5558888887653321 111110 12356888888887775544 4466646654
No 284
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.54 E-value=0.0053 Score=65.39 Aligned_cols=137 Identities=9% Similarity=0.012 Sum_probs=90.1
Q ss_pred CCcEEEEECCCCe--EEEEeccCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCC
Q 004207 576 DKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK 652 (768)
Q Consensus 576 Dg~I~VWdl~t~~--~~~tl~~h~~~V~sl~fspdg~-~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g 652 (768)
...|+.++++... ....+. ....+..++|++... ++++-...+.|..++++........+...-.....+++.+.+
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~ 90 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG 90 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTT
T ss_pred cCeEEEEECCCCceEEEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCC
Confidence 4578899987653 222222 223567899998644 445555678899999886532122222233457789999877
Q ss_pred CeEEEEEeCCCcEEEEECCCCeeEEEE-ecCCCeeEEEEecCCCEEEEEEc--CCeEEEEECCC
Q 004207 653 EDLLCSCDNNSEIRYWSINNGSCAGVF-KCQSGATQMRFQPRLGRILAAAI--ENYISILDVET 713 (768)
Q Consensus 653 ~~lLaSgs~Dg~I~iWDl~sg~~i~~~-~~~~~i~sl~fsp~~~~llags~--Dg~I~IwD~~t 713 (768)
..++++-...+.|.++++........+ ........++++|.+++|+.+.. .+.|..+++..
T Consensus 91 g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG 154 (318)
T 3sov_A 91 EKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG 154 (318)
T ss_dssp TEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTS
T ss_pred CeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCC
Confidence 778877777889999998754332222 22345788999998888887763 46777777754
No 285
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.53 E-value=0.0055 Score=65.46 Aligned_cols=164 Identities=9% Similarity=0.095 Sum_probs=109.7
Q ss_pred eccCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCCeeEEEeec----CC--CCeEEEEE---eCCCCeEEEEEe--
Q 004207 593 LEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDYSLRTFTG----HS--TTVMSLDF---HPSKEDLLCSCD-- 660 (768)
Q Consensus 593 l~~h~~~V~sl~fspdg~~LaTgs-~DgtIrVWDl~t~~~~~~~~~~----h~--~~V~slaf---sp~g~~lLaSgs-- 660 (768)
+........+++|++....|+.++ ..++|..||...+......+.+ .. ..+..|.| .|+ ..++++..
T Consensus 8 ~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~-grL~vv~~~~ 86 (334)
T 2p9w_A 8 VKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNS-KRLFAVMKNA 86 (334)
T ss_dssp ECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSC-CEEEEEEEET
T ss_pred ecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCC-CcEEEEEccc
Confidence 333444456899988655666655 7999999999865432222221 11 13578999 688 44665443
Q ss_pred -----------CCCcEEEEECC---CCeeEEEEecC--------------CCeeEEEEecCCCEEEEEEcC-CeEEEEEC
Q 004207 661 -----------NNSEIRYWSIN---NGSCAGVFKCQ--------------SGATQMRFQPRLGRILAAAIE-NYISILDV 711 (768)
Q Consensus 661 -----------~Dg~I~iWDl~---sg~~i~~~~~~--------------~~i~sl~fsp~~~~llags~D-g~I~IwD~ 711 (768)
.+..|..||+. +++.+...... .....++..++|+..++++.. +.|..++.
T Consensus 87 ~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~p 166 (334)
T 2p9w_A 87 KSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSA 166 (334)
T ss_dssp TTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECT
T ss_pred ccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeC
Confidence 26779999999 88877666531 247789999999999989888 88888887
Q ss_pred CCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 712 ETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 712 ~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
.... +..|.+... .....-..+.|+++|++..|++...+|.|..+|
T Consensus 167 dG~~-------~~~~~~~~~----~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD 212 (334)
T 2p9w_A 167 DGKT-------VSTFAWESG----NGGQRPGYSGITFDPHSNKLIAFGGPRALTAFD 212 (334)
T ss_dssp TSCC-------EEEEEECCC----CSSSCCSCSEEEEETTTTEEEEESSSSSEEEEE
T ss_pred CCCE-------EeeeeecCC----CcccccCcceEEEeCCCCEEEEEcCCCeEEEEc
Confidence 6542 233433221 112233477999999999888887788887654
No 286
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.51 E-value=0.0069 Score=64.73 Aligned_cols=161 Identities=10% Similarity=0.138 Sum_probs=107.1
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCeEEEEeccC-----C--CCEEEEEE---cCCCCEEEEEe---
Q 004207 551 IPASTSKVESCHFSPDGKLLATGG-HDKKAVLWCTESFTVKSTLEEH-----T--QWITDVRF---SPSLSRLATSS--- 616 (768)
Q Consensus 551 l~~H~~~I~sl~fSpdg~~LaSgs-~Dg~I~VWdl~t~~~~~tl~~h-----~--~~V~sl~f---spdg~~LaTgs--- 616 (768)
+......-.|++|++....|..++ ..++|..||...+......... . ..+..|.| .|+++++++..
T Consensus 8 ~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~ 87 (334)
T 2p9w_A 8 VKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAK 87 (334)
T ss_dssp ECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETT
T ss_pred ecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccc
Confidence 344455567899988555555554 7999999999865544332222 1 13689999 68877776543
Q ss_pred ----------CCCcEEEEECC---CCCeeEE-EeecC-----------CCCeEEEEEeCCCCeEEEEEeCC-CcEEEEEC
Q 004207 617 ----------ADRTVRVWDTE---NPDYSLR-TFTGH-----------STTVMSLDFHPSKEDLLCSCDNN-SEIRYWSI 670 (768)
Q Consensus 617 ----------~DgtIrVWDl~---t~~~~~~-~~~~h-----------~~~V~slafsp~g~~lLaSgs~D-g~I~iWDl 670 (768)
.+..|..||+. +++.... .+... ...+..++..++|+ .+++++.. +.|..++.
T Consensus 88 af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn-aYVt~s~~~~~I~rV~p 166 (334)
T 2p9w_A 88 SFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGN-SYVAFALGMPAIARVSA 166 (334)
T ss_dssp TTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSC-EEEEEEESSCEEEEECT
T ss_pred cccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCC-EEEeCCCCCCeEEEEeC
Confidence 15779999998 6654222 22111 12478899999987 55577777 77777776
Q ss_pred CCCeeEEEEec-------CCCeeEEEEecCCCEEEEEEcCCeEEEEECCC
Q 004207 671 NNGSCAGVFKC-------QSGATQMRFQPRLGRILAAAIENYISILDVET 713 (768)
Q Consensus 671 ~sg~~i~~~~~-------~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t 713 (768)
.. +.+..+.. ....+.|+++|++..|++....+.|..||+.+
T Consensus 167 dG-~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 167 DG-KTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp TS-CCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred CC-CEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 53 33333321 12366899999999999887899999999874
No 287
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=97.50 E-value=0.031 Score=66.58 Aligned_cols=153 Identities=9% Similarity=-0.027 Sum_probs=99.3
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEec--cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCe
Q 004207 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE--EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY 631 (768)
Q Consensus 554 H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~--~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~ 631 (768)
....|.++...+++.+.+ |+.++-|.+||..+++...... .....|.++...+++.+ ..|+. +-|.+||..++..
T Consensus 405 ~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~l-wigt~-~Gl~~~~~~~~~~ 481 (781)
T 3v9f_A 405 LSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKI-WIGTH-AGVFVIDLASKKV 481 (781)
T ss_dssp CCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEE-EEEET-TEEEEEESSSSSC
T ss_pred CCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCE-EEEEC-CceEEEeCCCCeE
Confidence 346799999887777554 6666779999987766543221 23467999999888764 44555 5689999887654
Q ss_pred eEEEeecC-----CCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-----CCCeeEEEEecCCCEEEEEE
Q 004207 632 SLRTFTGH-----STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-----QSGATQMRFQPRLGRILAAA 701 (768)
Q Consensus 632 ~~~~~~~h-----~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-----~~~i~sl~fsp~~~~llags 701 (768)
.. ..... ...|.++...++|. +. .|+.++-|..||..+++... +.. ...|.++...+++. |.+++
T Consensus 482 ~~-~~~~~~~~~~~~~i~~i~~d~~g~-lW-igt~~~Gl~~~~~~~~~~~~-~~~~~~l~~~~i~~i~~d~~g~-lWi~T 556 (781)
T 3v9f_A 482 IH-HYDTSNSQLLENFVRSIAQDSEGR-FW-IGTFGGGVGIYTPDMQLVRK-FNQYEGFCSNTINQIYRSSKGQ-MWLAT 556 (781)
T ss_dssp CE-EECTTTSSCSCSCEEEEEECTTCC-EE-EEESSSCEEEECTTCCEEEE-ECTTTTCSCSCEEEEEECTTSC-EEEEE
T ss_pred Ee-cccCcccccccceeEEEEEcCCCC-EE-EEEcCCCEEEEeCCCCeEEE-ccCCCCCCCCeeEEEEECCCCC-EEEEE
Confidence 22 21111 35789999988876 33 34444458889987665433 321 24577888888765 55556
Q ss_pred cCCeEEEEECCCc
Q 004207 702 IENYISILDVETQ 714 (768)
Q Consensus 702 ~Dg~I~IwD~~t~ 714 (768)
.+|.|..||..+.
T Consensus 557 ~~Glv~~~d~~~~ 569 (781)
T 3v9f_A 557 GEGLVCFPSARNF 569 (781)
T ss_dssp TTEEEEESCTTTC
T ss_pred CCCceEEECCCCC
Confidence 6554488887654
No 288
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.47 E-value=0.0058 Score=71.03 Aligned_cols=151 Identities=8% Similarity=0.034 Sum_probs=97.0
Q ss_pred CCEEEEEeC-CCcEEEEEC-CCCeEEEEeccCCCC-----------EEEEEEcCCCCE----EEEEeCCCcEEEEECCCC
Q 004207 567 GKLLATGGH-DKKAVLWCT-ESFTVKSTLEEHTQW-----------ITDVRFSPSLSR----LATSSADRTVRVWDTENP 629 (768)
Q Consensus 567 g~~LaSgs~-Dg~I~VWdl-~t~~~~~tl~~h~~~-----------V~sl~fspdg~~----LaTgs~DgtIrVWDl~t~ 629 (768)
+..|++++. ++.|+.+|. .+++.+..+...... ...++++|.+.. |++++.|+.|..+|.+++
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 456666666 889999999 899999887543211 123455443334 888889999999999998
Q ss_pred CeeEEEeecC-C--CCeE-EEEEeCCCCeEEEEEe-----CCCcEEEEECCCCeeEEEEecCCCe---------------
Q 004207 630 DYSLRTFTGH-S--TTVM-SLDFHPSKEDLLCSCD-----NNSEIRYWSINNGSCAGVFKCQSGA--------------- 685 (768)
Q Consensus 630 ~~~~~~~~~h-~--~~V~-slafsp~g~~lLaSgs-----~Dg~I~iWDl~sg~~i~~~~~~~~i--------------- 685 (768)
+..-..-... . ..++ +..+. + ..+++.++ .++.|+.+|.++|+.+..+......
T Consensus 142 ~~~W~~~~~~~~~~~~~~ssP~v~-~-g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~ 219 (599)
T 1w6s_A 142 ETVWKVENSDIKVGSTLTIAPYVV-K-DKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPH 219 (599)
T ss_dssp CEEEEEECCCGGGTCBCCSCCEEE-T-TEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGG
T ss_pred CEEEeecCCCCCccceeecCCEEE-C-CEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccccc
Confidence 8633322111 0 0111 11122 2 33443332 3789999999999999887753322
Q ss_pred ------------------------eEEEEecCCCEEEEEEcCC----------------eEEEEECCCceEeee
Q 004207 686 ------------------------TQMRFQPRLGRILAAAIEN----------------YISILDVETQVCRLK 719 (768)
Q Consensus 686 ------------------------~sl~fsp~~~~llags~Dg----------------~I~IwD~~t~~~~~~ 719 (768)
..+++.+..+.++.++.+. .|..+|.++++....
T Consensus 220 ~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~ 293 (599)
T 1w6s_A 220 YGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFG 293 (599)
T ss_dssp GCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEE
T ss_pred ccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeE
Confidence 1356778888888877653 678888887766543
No 289
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.43 E-value=0.002 Score=76.86 Aligned_cols=112 Identities=12% Similarity=0.145 Sum_probs=74.8
Q ss_pred CEEEEEEc-CCCCEEEEEeC-CC----cEEEEECCCC-CeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCC----CcEEE
Q 004207 599 WITDVRFS-PSLSRLATSSA-DR----TVRVWDTENP-DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN----SEIRY 667 (768)
Q Consensus 599 ~V~sl~fs-pdg~~LaTgs~-Dg----tIrVWDl~t~-~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~D----g~I~i 667 (768)
.+...+|| |||++|+.+.. +| +|+++|+.++ +.....+.. ...+++|+|+++.++++...+ ..|++
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~---~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSG---TNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEE---ECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccC---ceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 67889999 99998876543 33 5999999987 531111211 135688999998888776532 36888
Q ss_pred EECCCCee--EEEEec--CCCeeEEEEecCCCEEEEEEcC---CeEEEEECCC
Q 004207 668 WSINNGSC--AGVFKC--QSGATQMRFQPRLGRILAAAIE---NYISILDVET 713 (768)
Q Consensus 668 WDl~sg~~--i~~~~~--~~~i~sl~fsp~~~~llags~D---g~I~IwD~~t 713 (768)
+++.++.. +..+.. ......+.|+|++.+|+..+.+ ..|+++|+.+
T Consensus 252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~ 304 (751)
T 2xe4_A 252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRK 304 (751)
T ss_dssp EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSS
T ss_pred EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCC
Confidence 89887642 233332 2345678999999998877643 3466666655
No 290
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.37 E-value=0.034 Score=64.90 Aligned_cols=158 Identities=8% Similarity=0.017 Sum_probs=107.3
Q ss_pred CCeEEEEEcCCCCEEE-EEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCCeeE
Q 004207 556 SKVESCHFSPDGKLLA-TGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENPDYSL 633 (768)
Q Consensus 556 ~~I~sl~fSpdg~~La-Sgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~L-aTgs~DgtIrVWDl~t~~~~~ 633 (768)
..+..|+|++.+..|+ +-..++.|..++++.......+.........|++.+.+..| ++-...+.|.+.+++.... .
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~-~ 115 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHR-Q 115 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTC-E
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcE-E
Confidence 4578999999666555 44567889999987654444443333457789998765555 5545567899999875442 2
Q ss_pred EEeecCCCCeEEEEEeCCCCeEEEEE-eCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEc-CCeEEEEEC
Q 004207 634 RTFTGHSTTVMSLDFHPSKEDLLCSC-DNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDV 711 (768)
Q Consensus 634 ~~~~~h~~~V~slafsp~g~~lLaSg-s~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~-Dg~I~IwD~ 711 (768)
..+...-.....|+++|....++++- +..+.|...++........+..-.....++++++++.|+.+.. .+.|..+|+
T Consensus 116 ~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~ 195 (628)
T 4a0p_A 116 VLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNM 195 (628)
T ss_dssp EEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred EEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcC
Confidence 22323445678999999777777664 2357888888875444333444456788999998888887764 577888888
Q ss_pred CCc
Q 004207 712 ETQ 714 (768)
Q Consensus 712 ~t~ 714 (768)
...
T Consensus 196 dG~ 198 (628)
T 4a0p_A 196 LGL 198 (628)
T ss_dssp TSC
T ss_pred CCC
Confidence 653
No 291
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.31 E-value=0.0042 Score=69.13 Aligned_cols=151 Identities=11% Similarity=0.090 Sum_probs=94.2
Q ss_pred CEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCC----cEEEEECCCC
Q 004207 599 WITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS----EIRYWSINNG 673 (768)
Q Consensus 599 ~V~sl~fsp-dg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg----~I~iWDl~sg 673 (768)
....|+|+| +...|+++...+.|+++|++.+. +..+.........|+|+++++.++++...++ .+.+++. .+
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~--v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g 214 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEY--VSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ES 214 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTE--EEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GG
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCE--EEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CC
Confidence 457899998 45566666665889999998654 3334445566889999999987776665333 2333443 33
Q ss_pred eeE--EEEecCCCeeEEEEecCCCEEEEEE-cCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeC
Q 004207 674 SCA--GVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAAST 750 (768)
Q Consensus 674 ~~i--~~~~~~~~i~sl~fsp~~~~llags-~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~sp 750 (768)
... ..+........++++|+.+.|+++. .++.|..||..+.... .+. .. ........|+|+|
T Consensus 215 ~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~------~~~--------~~-~~~~~P~gia~~p 279 (430)
T 3tc9_A 215 GFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETT------PLF--------TI-QDSGWEFHIQFHP 279 (430)
T ss_dssp TSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEE------EEE--------EC-SSSSCCEEEEECT
T ss_pred ceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEE------EEE--------Ec-CCCCcceeEEEcC
Confidence 222 2333344567788999545555555 5678888988765431 011 11 1123467899999
Q ss_pred CCCEEEEEE-CCCcEEEe
Q 004207 751 VNGMVASAS-HDKCVKIW 767 (768)
Q Consensus 751 dg~~LaSgs-~DG~V~IW 767 (768)
++++|+.+. ..+.|.++
T Consensus 280 dG~~lyv~d~~~~~I~~~ 297 (430)
T 3tc9_A 280 SGNYAYIVVVNQHYILRS 297 (430)
T ss_dssp TSSEEEEEETTTTEEEEE
T ss_pred CCCEEEEEECCCCEEEEE
Confidence 998555554 45667665
No 292
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.28 E-value=0.045 Score=65.54 Aligned_cols=144 Identities=7% Similarity=-0.018 Sum_probs=95.7
Q ss_pred EEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCC---eeEEEeecCCCCeE
Q 004207 569 LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENPD---YSLRTFTGHSTTVM 644 (768)
Q Consensus 569 ~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~L-aTgs~DgtIrVWDl~t~~---~~~~~~~~h~~~V~ 644 (768)
+|+.+ ....|+..++........+. ....+..|+|++....| ++-...+.|+.++++... .....+........
T Consensus 397 ~Ll~a-n~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~ 474 (791)
T 3m0c_C 397 YLFFT-NRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 474 (791)
T ss_dssp EEEEE-CBSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred ccccc-cccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcc
Confidence 34433 34578888887665554444 34568899999855544 455556789999987531 11233333445678
Q ss_pred EEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEe-cCCCeeEEEEecCCCEEEEEEcC--CeEEEEECCCc
Q 004207 645 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIE--NYISILDVETQ 714 (768)
Q Consensus 645 slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~-~~~~i~sl~fsp~~~~llags~D--g~I~IwD~~t~ 714 (768)
.|++.+.++.|+++-...+.|.+.++........+. .......|+++|..++|+.+... +.|.++++...
T Consensus 475 GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~ 547 (791)
T 3m0c_C 475 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV 547 (791)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred eeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCC
Confidence 899998888888888888999999998544333333 23457899999988888887642 67888887654
No 293
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.17 E-value=0.061 Score=57.86 Aligned_cols=142 Identities=12% Similarity=0.151 Sum_probs=80.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE--EEEec---cCCCCEEEEEEcCC---CCEEEEEeC-C-----CcE
Q 004207 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV--KSTLE---EHTQWITDVRFSPS---LSRLATSSA-D-----RTV 621 (768)
Q Consensus 556 ~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~--~~tl~---~h~~~V~sl~fspd---g~~LaTgs~-D-----gtI 621 (768)
..-.+++|.|||+++++ ..+|.|++++ +++. +..+. ........|+|+|+ +..|+++.. . ..|
T Consensus 31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp SCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred CCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 34678999999985555 5679999998 3432 22221 12346899999998 555555443 2 678
Q ss_pred EEEECCCCCe-----eEEEee---cCCCCeEEEEEeCCCCeEEEEEeC-------------CCcEEEEECCCC-------
Q 004207 622 RVWDTENPDY-----SLRTFT---GHSTTVMSLDFHPSKEDLLCSCDN-------------NSEIRYWSINNG------- 673 (768)
Q Consensus 622 rVWDl~t~~~-----~~~~~~---~h~~~V~slafsp~g~~lLaSgs~-------------Dg~I~iWDl~sg------- 673 (768)
..|+...... .+..+. +.......|+|.|+|. ++++.+. .+.|.-+|....
T Consensus 108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf 186 (352)
T 2ism_A 108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM-LYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPF 186 (352)
T ss_dssp EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC-EEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTT
T ss_pred EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC-EEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcc
Confidence 8888764321 112122 1112346899999986 5544321 145666665420
Q ss_pred -----eeEEEEe-cCCCeeEEEEecCCCEEEEEE
Q 004207 674 -----SCAGVFK-CQSGATQMRFQPRLGRILAAA 701 (768)
Q Consensus 674 -----~~i~~~~-~~~~i~sl~fsp~~~~llags 701 (768)
.....+. .......++|+|+.+.|+++.
T Consensus 187 ~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d 220 (352)
T 2ism_A 187 LGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSE 220 (352)
T ss_dssp TTCTTSCTTEEEECCSEECCCEECTTTCCEEEEE
T ss_pred cCCCCCCccEEEEcCCCcccEEEECCCCCEEEEE
Confidence 1111121 223456788999444455544
No 294
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.15 E-value=0.33 Score=51.67 Aligned_cols=107 Identities=16% Similarity=0.214 Sum_probs=72.6
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCC
Q 004207 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS 640 (768)
Q Consensus 561 l~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~ 640 (768)
.-.+|..+.||.-. ..++.|+|+++...+..+.-. ..|.--+|-.+. .|+-.+ +..|+-|+++....+.+.+..|.
T Consensus 72 AIMnP~~~ViALra-g~~LQiFnletK~klks~~~~-e~VvfWkWis~~-~L~lVT-~taVyHWs~~~~s~P~kvFdR~~ 147 (365)
T 2xzh_A 72 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHS 147 (365)
T ss_dssp EEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECS-SCEEEEEECSSS-EEEEEE-SSEEEEEESSTTCCCEEEEECCG
T ss_pred eeeCCCccEEEEec-CCeEEEechHHhhhhcceecC-CccEEEEecCCC-eEEEEc-CCcEEEEcccCCCCCceeeecch
Confidence 44578888777765 578999999999888877644 567777776553 444443 56799999987656666666553
Q ss_pred ----CCeEEEEEeCCCCeEEEEEe------CCCcEEEEECC
Q 004207 641 ----TTVMSLDFHPSKEDLLCSCD------NNSEIRYWSIN 671 (768)
Q Consensus 641 ----~~V~slafsp~g~~lLaSgs------~Dg~I~iWDl~ 671 (768)
..|.....+++.++++++|- -.|.+.+|.++
T Consensus 148 ~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~e 188 (365)
T 2xzh_A 148 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD 188 (365)
T ss_dssp GGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETT
T ss_pred hcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeec
Confidence 34666666777777666553 23556666665
No 295
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.05 E-value=0.0015 Score=77.44 Aligned_cols=156 Identities=12% Similarity=-0.014 Sum_probs=96.5
Q ss_pred CCeEEEEEcCCCCEEEEE-eCCCcEEEEECCC----CeEEEEeccCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCC
Q 004207 556 SKVESCHFSPDGKLLATG-GHDKKAVLWCTES----FTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENP 629 (768)
Q Consensus 556 ~~I~sl~fSpdg~~LaSg-s~Dg~I~VWdl~t----~~~~~tl~~h~~~V~sl~fspd-g~~LaTgs~DgtIrVWDl~t~ 629 (768)
..+..|+|++.+..|+.+ ...+.|+.+++.+ ......+.........|++.+. ++++++-...+.|.+++++..
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 346789999876666555 4557899999875 2222222211223567888864 444455456788999998754
Q ss_pred CeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCC-CcEEEEECCCCeeEEEEe-c-CCCeeEEEEecCCCEEEEEE-cCCe
Q 004207 630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-SEIRYWSINNGSCAGVFK-C-QSGATQMRFQPRLGRILAAA-IENY 705 (768)
Q Consensus 630 ~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~D-g~I~iWDl~sg~~i~~~~-~-~~~i~sl~fsp~~~~llags-~Dg~ 705 (768)
.. ...+.........|+++|.+..|+++-... +.|.++++... ....+. . -.....|+|+|+++.|+++. ..+.
T Consensus 486 ~~-~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~-~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~ 563 (699)
T 1n7d_A 486 KR-KTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS 563 (699)
T ss_dssp CE-EEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSC-CCCEESCSSCSSCCCEEECTTTCCEEEEETTTTE
T ss_pred ce-EEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCC-CeeEEEeCCCCCccEEEEeccCCEEEEEecCCCe
Confidence 32 223332234567899999877677655333 78888887632 222221 1 23456799999877777766 4567
Q ss_pred EEEEECCC
Q 004207 706 ISILDVET 713 (768)
Q Consensus 706 I~IwD~~t 713 (768)
|.++|+..
T Consensus 564 I~~~d~dG 571 (699)
T 1n7d_A 564 ISSIDVNG 571 (699)
T ss_dssp EEEECSSS
T ss_pred EEEEccCC
Confidence 88888865
No 296
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.99 E-value=0.51 Score=52.04 Aligned_cols=108 Identities=17% Similarity=0.225 Sum_probs=72.1
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecC
Q 004207 560 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH 639 (768)
Q Consensus 560 sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h 639 (768)
+.-.+|..+.||.-. ..++.|||+++...+..+.-.. .|.--+|-.+ +.|+-. .+..|+-|+++....+...+..|
T Consensus 70 sAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e-~VvfWkWis~-~~l~lV-T~taVyHWsi~~~s~P~kvFdR~ 145 (494)
T 1bpo_A 70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISL-NTVALV-TDNAVYHWSMEGESQPVKMFDRH 145 (494)
T ss_dssp EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEEEET-TEEEEE-CSSEEEEEESSSSCCCEEEEECC
T ss_pred eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC-CceEEEecCC-CeEEEE-cCCeeEEecccCCCCchhheecc
Confidence 345677777777665 5789999999988888776544 4656666544 345444 35689999998655666666655
Q ss_pred C----CCeEEEEEeCCCCeEEEEEe------CCCcEEEEECC
Q 004207 640 S----TTVMSLDFHPSKEDLLCSCD------NNSEIRYWSIN 671 (768)
Q Consensus 640 ~----~~V~slafsp~g~~lLaSgs------~Dg~I~iWDl~ 671 (768)
. ..|.....+++.++++++|- -.|.+.+|.++
T Consensus 146 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~e 187 (494)
T 1bpo_A 146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD 187 (494)
T ss_dssp GGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEEST
T ss_pred hhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecc
Confidence 3 45666667777777766553 23455666654
No 297
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=96.93 E-value=0.11 Score=60.38 Aligned_cols=159 Identities=9% Similarity=-0.026 Sum_probs=102.1
Q ss_pred CCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCeE-EEEeccCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCCe
Q 004207 555 TSKVESCHFSPDGKLLATGG-HDKKAVLWCTESFTV-KSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENPDY 631 (768)
Q Consensus 555 ~~~I~sl~fSpdg~~LaSgs-~Dg~I~VWdl~t~~~-~~tl~~h~~~V~sl~fspdg~~L-aTgs~DgtIrVWDl~t~~~ 631 (768)
-..+..++|++.+..|+.+. ..+.|..++++.... ...+...-.....|++.+.+..| ++-...+.|.+.+++....
T Consensus 39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~ 118 (619)
T 3s94_A 39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR 118 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCE
Confidence 34578899999766666554 467898998876532 23333333568999999865544 4555678999999986442
Q ss_pred eEEEeecCCCCeEEEEEeCCCCeEEEEEe-CCCcEEEEECCCCeeEEEEe-cCCCeeEEEEecCCCEEEEEEc-CCeEEE
Q 004207 632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCD-NNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAI-ENYISI 708 (768)
Q Consensus 632 ~~~~~~~h~~~V~slafsp~g~~lLaSgs-~Dg~I~iWDl~sg~~i~~~~-~~~~i~sl~fsp~~~~llags~-Dg~I~I 708 (768)
.......-.....|+++|.+..++++-- ..+.|...++.......... .-.....++++++++.|+.+.. .+.|..
T Consensus 119 -~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~ 197 (619)
T 3s94_A 119 -KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHK 197 (619)
T ss_dssp -EEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEE
T ss_pred -EEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEE
Confidence 2223234456789999998777776652 24677777776332222222 2345688999998888887764 567888
Q ss_pred EECCCc
Q 004207 709 LDVETQ 714 (768)
Q Consensus 709 wD~~t~ 714 (768)
+|+...
T Consensus 198 ~~~dG~ 203 (619)
T 3s94_A 198 SNLDGT 203 (619)
T ss_dssp ESSSCC
T ss_pred ecCCCC
Confidence 888653
No 298
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.90 E-value=0.16 Score=54.96 Aligned_cols=188 Identities=15% Similarity=0.151 Sum_probs=109.6
Q ss_pred CeEEEEEcCCCCEEEEEe------------CCCcEEEEECCC--CeEE-EEecc-----CCCCEEEEEEcC--CCC-EEE
Q 004207 557 KVESCHFSPDGKLLATGG------------HDKKAVLWCTES--FTVK-STLEE-----HTQWITDVRFSP--SLS-RLA 613 (768)
Q Consensus 557 ~I~sl~fSpdg~~LaSgs------------~Dg~I~VWdl~t--~~~~-~tl~~-----h~~~V~sl~fsp--dg~-~La 613 (768)
....+.+.++|..+++++ .+|.|.++|.++ .+.. ..+.+ .......|.+.+ ++. +|+
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 456677788876655552 689999999873 2321 12222 123567777755 343 455
Q ss_pred EEeC---CCcEEEEECCCCCee---EEEeecC-CCCeEEEEEeCCCCeEEEEEe-----------------CCCcEEEEE
Q 004207 614 TSSA---DRTVRVWDTENPDYS---LRTFTGH-STTVMSLDFHPSKEDLLCSCD-----------------NNSEIRYWS 669 (768)
Q Consensus 614 Tgs~---DgtIrVWDl~t~~~~---~~~~~~h-~~~V~slafsp~g~~lLaSgs-----------------~Dg~I~iWD 669 (768)
++.. +.+|.||+++..... +..+.+. -.....+.+.++|. ++++.. ..|.|..||
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~-fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d 209 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH-FYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS 209 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE-EEEEESCSCSSHHHHHHHHHTTCCCEEEEEEC
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCC-EEecCCcEeCCcccccchhhccCCccEEEEEE
Confidence 5432 467888887654322 2233322 24578999999976 444543 124455555
Q ss_pred CCCCeeEEEEecCCCeeEEEEecCCCEEEEEE-cCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEE
Q 004207 670 INNGSCAGVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAA 748 (768)
Q Consensus 670 l~sg~~i~~~~~~~~i~sl~fsp~~~~llags-~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~ 748 (768)
. +++......-...+.++|+|++..++++. ..+.|..||+....... ..+++++ .+..-.+++
T Consensus 210 ~--~~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~---~~~~~~~-----------~g~PDGi~v 273 (355)
T 3sre_A 210 P--NDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLT---PLRVLSF-----------DTLVDNISV 273 (355)
T ss_dssp T--TCCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEE---EEEEEEC-----------SSEEEEEEE
T ss_pred C--CeEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEe---cCEEEeC-----------CCCCceEEE
Confidence 4 34433344445678999999998888776 46889999986421111 1222221 244567777
Q ss_pred eC-CCCEEEEEECC
Q 004207 749 ST-VNGMVASASHD 761 (768)
Q Consensus 749 sp-dg~~LaSgs~D 761 (768)
.+ +|++.+++..+
T Consensus 274 D~e~G~lwva~~~~ 287 (355)
T 3sre_A 274 DPVTGDLWVGCHPN 287 (355)
T ss_dssp CTTTCCEEEEEESC
T ss_pred eCCCCcEEEEecCC
Confidence 77 47766655433
No 299
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=96.85 E-value=0.18 Score=58.56 Aligned_cols=139 Identities=9% Similarity=0.014 Sum_probs=87.1
Q ss_pred CCCcEEEEECCCCe-EEEEeccCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCC
Q 004207 575 HDKKAVLWCTESFT-VKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK 652 (768)
Q Consensus 575 ~Dg~I~VWdl~t~~-~~~tl~~h~~~V~sl~fspdg~~LaTgs~-DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g 652 (768)
....|++.++.... ....+...-..+..|+|++.+..|+.+.. .+.|..++++........+...-.....|++++.+
T Consensus 16 ~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~ 95 (619)
T 3s94_A 16 NRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG 95 (619)
T ss_dssp CSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTT
T ss_pred ccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecC
Confidence 45678888887643 22222233456789999997666665544 67899999875432123333333568899999987
Q ss_pred CeEEEEEeCCCcEEEEECCCCeeEEEE-ecCCCeeEEEEecCCCEEEEEEc--CCeEEEEECCC
Q 004207 653 EDLLCSCDNNSEIRYWSINNGSCAGVF-KCQSGATQMRFQPRLGRILAAAI--ENYISILDVET 713 (768)
Q Consensus 653 ~~lLaSgs~Dg~I~iWDl~sg~~i~~~-~~~~~i~sl~fsp~~~~llags~--Dg~I~IwD~~t 713 (768)
+.++++-...+.|.+.++........+ ..-.....++++|.+++|+.+.. .+.|...++..
T Consensus 96 ~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG 159 (619)
T 3s94_A 96 EKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG 159 (619)
T ss_dssp TEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred CEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCC
Confidence 888888888899999999754333333 22345678999998888887764 34566666543
No 300
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=96.84 E-value=0.14 Score=55.08 Aligned_cols=139 Identities=9% Similarity=0.098 Sum_probs=90.6
Q ss_pred CCcEEEEECC--CCeEEEEecc------CC-CCEEEEEE--cCC-CC-EEEEEeCCCcEEEEECCC---CC---eeEEEe
Q 004207 576 DKKAVLWCTE--SFTVKSTLEE------HT-QWITDVRF--SPS-LS-RLATSSADRTVRVWDTEN---PD---YSLRTF 636 (768)
Q Consensus 576 Dg~I~VWdl~--t~~~~~tl~~------h~-~~V~sl~f--spd-g~-~LaTgs~DgtIrVWDl~t---~~---~~~~~~ 636 (768)
+.+|.||+++ +++ +..+.. .. ..+..+|+ ++. +. ++++...+|.+..|++.. +. ..++.+
T Consensus 98 ~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f 176 (355)
T 3amr_A 98 KNTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAF 176 (355)
T ss_dssp CCEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEE
T ss_pred CCeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEe
Confidence 5789999773 333 444421 11 45677777 774 44 688888999999999842 21 224555
Q ss_pred ecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECC-----CCeeEEEEec---CCCeeEEEEe--cCCC-EEEEEE-cCC
Q 004207 637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-----NGSCAGVFKC---QSGATQMRFQ--PRLG-RILAAA-IEN 704 (768)
Q Consensus 637 ~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~-----sg~~i~~~~~---~~~i~sl~fs--p~~~-~llags-~Dg 704 (768)
.- .+.+..|...+....++ .+.++..|..||.+ +++.+..+.. ...+..|++- +++. +|++++ .++
T Consensus 177 ~l-gsq~EgcvvDd~~g~Ly-v~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~ 254 (355)
T 3amr_A 177 KM-NSQTEGMAADDEYGRLY-IAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNS 254 (355)
T ss_dssp EC-SSCEEEEEEETTTTEEE-EEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGT
T ss_pred cC-CCCcceEEEcCCCCeEE-EecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCC
Confidence 53 45788899998766555 77777777777755 3455555433 2467788874 4444 777777 577
Q ss_pred eEEEEECC-CceEe
Q 004207 705 YISILDVE-TQVCR 717 (768)
Q Consensus 705 ~I~IwD~~-t~~~~ 717 (768)
.+.+||.. +.+.+
T Consensus 255 s~~Vydr~~~~~~v 268 (355)
T 3amr_A 255 SYAIYDRQGKNKYV 268 (355)
T ss_dssp EEEEEESSTTCCEE
T ss_pred EEEEEECCCCCcEE
Confidence 99999996 44443
No 301
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=96.83 E-value=0.0004 Score=82.75 Aligned_cols=14 Identities=21% Similarity=0.207 Sum_probs=2.8
Q ss_pred ccCCCCeeEEEEeC
Q 004207 737 SAHDKLVSSLAAST 750 (768)
Q Consensus 737 ~~H~~~I~sla~sp 750 (768)
.+|-..+..+.|.+
T Consensus 706 SDH~pV~a~f~l~~ 719 (727)
T 4b8c_D 706 SDHIPLLARFEFMK 719 (727)
T ss_dssp SSBCC---------
T ss_pred CCceeEEEEEEEec
Confidence 45655566666654
No 302
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=96.73 E-value=0.24 Score=57.73 Aligned_cols=144 Identities=8% Similarity=0.002 Sum_probs=95.7
Q ss_pred EEEEEeCCCcEEEEECCCCeEEEEec-cCCCCEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCCeeEEEeecCCCCeEEE
Q 004207 569 LLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLA-TSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL 646 (768)
Q Consensus 569 ~LaSgs~Dg~I~VWdl~t~~~~~tl~-~h~~~V~sl~fspdg~~La-Tgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~sl 646 (768)
+|+.+ ....|+..++++......+. ..-..+..|+|++....|+ +-..++.|+.++++.... ...+.........|
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~-~~v~~~g~~~P~Gl 85 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSAL-EHVVEFGLDYPEGM 85 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSCCCEE
T ss_pred EEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCc-EEEEeCCCCCcceE
Confidence 34433 45679999998765443332 2234688999999755555 445578999999876443 23333223457789
Q ss_pred EEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEE-ecCCCeeEEEEecCCCEEEEEEc--CCeEEEEECCCc
Q 004207 647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-KCQSGATQMRFQPRLGRILAAAI--ENYISILDVETQ 714 (768)
Q Consensus 647 afsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~-~~~~~i~sl~fsp~~~~llags~--Dg~I~IwD~~t~ 714 (768)
++++.+..++++-...+.|.+.++........+ ..-.....++++|..++|+.+.. .+.|..+++...
T Consensus 86 AvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~ 156 (628)
T 4a0p_A 86 AVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGS 156 (628)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred EEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCC
Confidence 998887888888777889999998754332222 22345789999998888887763 456777766543
No 303
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=96.68 E-value=0.23 Score=52.56 Aligned_cols=159 Identities=11% Similarity=0.147 Sum_probs=96.7
Q ss_pred CceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEE-EEC--CCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCC
Q 004207 542 GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVL-WCT--ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD 618 (768)
Q Consensus 542 ~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~V-Wdl--~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~D 618 (768)
+.++..+. ..+...+.++.+.+++.+++++. +|.|.. +|- .+.+.+. ......+..+.+.+++.++ .++.+
T Consensus 151 G~tW~~~~--~~~~~~~~~~~~~~~~~~~~~g~-~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~-~~~~~ 224 (327)
T 2xbg_A 151 GKNWQALV--QEAIGVMRNLNRSPSGEYVAVSS-RGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLW-MIVNG 224 (327)
T ss_dssp TSSEEEEE--CSCCCCEEEEEECTTSCEEEEET-TSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEE-EEETT
T ss_pred CCCCEEee--cCCCcceEEEEEcCCCcEEEEEC-CCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEE-EEeCC
Confidence 44555543 24556799999999988887664 454444 442 3344432 2345678999999988655 45568
Q ss_pred CcEEEEECCCCCeeEEEee-c---CCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec----CCCeeEEEE
Q 004207 619 RTVRVWDTENPDYSLRTFT-G---HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC----QSGATQMRF 690 (768)
Q Consensus 619 gtIrVWDl~t~~~~~~~~~-~---h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~----~~~i~sl~f 690 (768)
|.|++++.+.+.. -..+. . +...+.++.+.+++. +++++. ++.| ++....++.-..+.. ...+.++.|
T Consensus 225 G~~~~s~~D~G~t-W~~~~~~~~~~~~~~~~v~~~~~~~-~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~ 300 (327)
T 2xbg_A 225 GKIAFSDPDNSEN-WGELLSPLRRNSVGFLDLAYRTPNE-VWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILF 300 (327)
T ss_dssp TEEEEEETTEEEE-ECCCBCTTSSCCSCEEEEEESSSSC-EEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEE
T ss_pred ceEEEecCCCCCe-eEeccCCcccCCcceEEEEecCCCE-EEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEE
Confidence 8888775332221 11111 1 223588999988654 554544 6766 455555544333331 356788888
Q ss_pred ecCCCEEEEEEcCCeEEEEEC
Q 004207 691 QPRLGRILAAAIENYISILDV 711 (768)
Q Consensus 691 sp~~~~llags~Dg~I~IwD~ 711 (768)
.++ ..+++++.+|.|..++-
T Consensus 301 ~~~-~~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 301 FSP-DQGFILGQKGILLRYVT 320 (327)
T ss_dssp EET-TEEEEECSTTEEEEECC
T ss_pred ECC-CceEEEcCCceEEEEcC
Confidence 754 56788888998776654
No 304
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.55 E-value=0.4 Score=51.50 Aligned_cols=190 Identities=11% Similarity=0.050 Sum_probs=97.2
Q ss_pred CCeEEEEEcCC---CCEEEEEeC----C----CcEEEEECCCC-------eEE-EEecc-CCCCEEEEEEcCCCCEEEEE
Q 004207 556 SKVESCHFSPD---GKLLATGGH----D----KKAVLWCTESF-------TVK-STLEE-HTQWITDVRFSPSLSRLATS 615 (768)
Q Consensus 556 ~~I~sl~fSpd---g~~LaSgs~----D----g~I~VWdl~t~-------~~~-~tl~~-h~~~V~sl~fspdg~~LaTg 615 (768)
.....|+|+|+ +..|+++.. + ..|..|+.... +.+ ..+.. .......|+|.|||.++++.
T Consensus 73 ~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~ 152 (354)
T 3a9g_A 73 AGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITT 152 (354)
T ss_dssp CSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEEC
T ss_pred CceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEE
Confidence 45889999997 555544433 3 56777876643 111 11221 11124679999999877664
Q ss_pred eC-------------CCcEEEEECCCC--------CeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCC---cEEEEECC
Q 004207 616 SA-------------DRTVRVWDTENP--------DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS---EIRYWSIN 671 (768)
Q Consensus 616 s~-------------DgtIrVWDl~t~--------~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg---~I~iWDl~ 671 (768)
+. .|.|.-++.+.. .. .....++. ....++|+|+...++++-.... .|.+..-.
T Consensus 153 G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~-~i~a~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G 230 (354)
T 3a9g_A 153 GDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNS-PIWSYGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIILKG 230 (354)
T ss_dssp CCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTC-CEEEECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEECTT
T ss_pred CCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCC-cEEEEccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEecCC
Confidence 33 245555555431 11 11223443 4568999994444654432221 24333211
Q ss_pred C--------C--------eeEEEE-ecCCCeeEEEEe-------cCCCEEEEEEcCCeEEEEECCCceEeeecceeEEee
Q 004207 672 N--------G--------SCAGVF-KCQSGATQMRFQ-------PRLGRILAAAIENYISILDVETQVCRLKLQTLELWN 727 (768)
Q Consensus 672 s--------g--------~~i~~~-~~~~~i~sl~fs-------p~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd 727 (768)
. + ..+..+ ..+.....++|. .++..+++....+.|..+++........ ...
T Consensus 231 ~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~---~~~-- 305 (354)
T 3a9g_A 231 GNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRK---IST-- 305 (354)
T ss_dssp CBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEE---EEE--
T ss_pred CcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccc---eee--
Confidence 0 0 122222 123456677773 3443344433456677777654211100 000
Q ss_pred cCCCceEEeccCCCCeeEEEEeCCCCEEEEEE
Q 004207 728 MTENKTLTLSAHDKLVSSLAASTVNGMVASAS 759 (768)
Q Consensus 728 ~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs 759 (768)
.+..-...+..|++.|||.++++..
T Consensus 306 -------~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 306 -------FFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp -------ECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred -------eccCCCCCeeEEEECCCCcEEEEEe
Confidence 1112235689999999998766664
No 305
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.49 E-value=0.33 Score=52.09 Aligned_cols=144 Identities=13% Similarity=0.056 Sum_probs=80.6
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEe-------ccCCCCEEEEEEcCC---CCEEEEEe-C-------C
Q 004207 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-------EEHTQWITDVRFSPS---LSRLATSS-A-------D 618 (768)
Q Consensus 557 ~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl-------~~h~~~V~sl~fspd---g~~LaTgs-~-------D 618 (768)
....|+|.|+|++|+++...|.|++++.. +.....+ .........|+|+|+ +..|+.+. . .
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 46899999999934455567999999854 3322111 112345789999996 45554442 2 2
Q ss_pred CcEEEEECCCCC----eeEEEeec------CCCCeEEEEEeCCCCeEEEEEeC-------------CCcEEEEECCCCe-
Q 004207 619 RTVRVWDTENPD----YSLRTFTG------HSTTVMSLDFHPSKEDLLCSCDN-------------NSEIRYWSINNGS- 674 (768)
Q Consensus 619 gtIrVWDl~t~~----~~~~~~~~------h~~~V~slafsp~g~~lLaSgs~-------------Dg~I~iWDl~sg~- 674 (768)
..|..|++.... .....+.. .......|+|.|+|. |+++.+. .|.|.-+|....-
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p 176 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGY-LFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP 176 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSE-EEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCc-EEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC
Confidence 356666665331 11111111 112246799999985 4444332 2467667765320
Q ss_pred -----------eEEEEe-cCCCeeEEEEecCCCEEEEEEc
Q 004207 675 -----------CAGVFK-CQSGATQMRFQPRLGRILAAAI 702 (768)
Q Consensus 675 -----------~i~~~~-~~~~i~sl~fsp~~~~llags~ 702 (768)
....+. .......++|+|..+.|+++..
T Consensus 177 ~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~ 216 (353)
T 2g8s_A 177 DDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEH 216 (353)
T ss_dssp TTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEE
T ss_pred CCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEec
Confidence 112222 2345778999995566666554
No 306
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.46 E-value=0.13 Score=53.27 Aligned_cols=144 Identities=6% Similarity=0.027 Sum_probs=72.6
Q ss_pred CCCEEEEEeCC----CcEEEEECCCCeEEEE--eccCCCCEEEEEEcCCCCEEEEEeCC------CcEEEEECCCCCeeE
Q 004207 566 DGKLLATGGHD----KKAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSAD------RTVRVWDTENPDYSL 633 (768)
Q Consensus 566 dg~~LaSgs~D----g~I~VWdl~t~~~~~t--l~~h~~~V~sl~fspdg~~LaTgs~D------gtIrVWDl~t~~~~~ 633 (768)
++.+++.|+.+ ..+.+||..+.+-... +........++.+ ++.+++.|+.+ ..+.+||+.+.....
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~ 132 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHT 132 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEE
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEe
Confidence 66777777755 5688999887653322 2211222223333 56677777765 468999998765322
Q ss_pred EEeecCCCCeEEEEEeCCCCeEEEEEeC---------CCcEEEEECCCCeeEEEEecCC--CeeEEEEecCCCEEEEEEc
Q 004207 634 RTFTGHSTTVMSLDFHPSKEDLLCSCDN---------NSEIRYWSINNGSCAGVFKCQS--GATQMRFQPRLGRILAAAI 702 (768)
Q Consensus 634 ~~~~~h~~~V~slafsp~g~~lLaSgs~---------Dg~I~iWDl~sg~~i~~~~~~~--~i~sl~fsp~~~~llags~ 702 (768)
..-......-.+++.. + ..+++.|+. -..+.+||+.+.+-...-.... .-.+++.. ++..++.|+.
T Consensus 133 ~~~~p~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~ 209 (306)
T 3ii7_A 133 KPSMLTQRCSHGMVEA-N-GLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQ 209 (306)
T ss_dssp ECCCSSCCBSCEEEEE-T-TEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCE
T ss_pred CCCCcCCcceeEEEEE-C-CEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCC
Confidence 1111111111122222 3 456666653 3458899998775443322111 11222222 3344445443
Q ss_pred C-----CeEEEEECCCc
Q 004207 703 E-----NYISILDVETQ 714 (768)
Q Consensus 703 D-----g~I~IwD~~t~ 714 (768)
+ ..|.+||+.+.
T Consensus 210 ~~~~~~~~~~~yd~~~~ 226 (306)
T 3ii7_A 210 NGLGGLDNVEYYDIKLN 226 (306)
T ss_dssp ETTEEBCCEEEEETTTT
T ss_pred CCCCCCceEEEeeCCCC
Confidence 2 34566666654
No 307
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.37 E-value=0.27 Score=50.84 Aligned_cols=145 Identities=8% Similarity=0.091 Sum_probs=72.6
Q ss_pred CCCEEEEEeCC-----CcEEEEECCCCeEEEE--eccCCCCEEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCCeeE
Q 004207 566 DGKLLATGGHD-----KKAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSADR-----TVRVWDTENPDYSL 633 (768)
Q Consensus 566 dg~~LaSgs~D-----g~I~VWdl~t~~~~~t--l~~h~~~V~sl~fspdg~~LaTgs~Dg-----tIrVWDl~t~~~~~ 633 (768)
++.+++.|+.+ ..+.+||..+.+-... +........++.+ ++.+++.|+.++ .+.+||+.+.....
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~ 138 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFH 138 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEee
Confidence 66777777754 3588899887653322 1111122223333 466777777653 57888988765322
Q ss_pred EEeecCCCCeEEEEEeCCCCeEEEEEeCC-------CcEEEEECCCCeeEEEEecCC--CeeEEEEecCCCEEEEEEcC-
Q 004207 634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNN-------SEIRYWSINNGSCAGVFKCQS--GATQMRFQPRLGRILAAAIE- 703 (768)
Q Consensus 634 ~~~~~h~~~V~slafsp~g~~lLaSgs~D-------g~I~iWDl~sg~~i~~~~~~~--~i~sl~fsp~~~~llags~D- 703 (768)
.........-.+++.. + ..+++.|+.+ ..+.+||+.+.+-...-.... ...+++.. ++..++.|+.+
T Consensus 139 ~~~~p~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~ 215 (302)
T 2xn4_A 139 VAPMNTRRSSVGVGVV-G-GLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL-NNLLYAVGGHDG 215 (302)
T ss_dssp ECCCSSCCBSCEEEEE-T-TEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCBSS
T ss_pred cCCCCCcccCceEEEE-C-CEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE-CCEEEEECCCCC
Confidence 1111111111222222 2 4566666542 358899998765443322111 11222222 34445555543
Q ss_pred ----CeEEEEECCCce
Q 004207 704 ----NYISILDVETQV 715 (768)
Q Consensus 704 ----g~I~IwD~~t~~ 715 (768)
+.+.+||+.+..
T Consensus 216 ~~~~~~~~~yd~~~~~ 231 (302)
T 2xn4_A 216 PLVRKSVEVYDPTTNA 231 (302)
T ss_dssp SSBCCCEEEEETTTTE
T ss_pred CcccceEEEEeCCCCC
Confidence 346667766543
No 308
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=96.37 E-value=0.021 Score=67.61 Aligned_cols=159 Identities=9% Similarity=-0.038 Sum_probs=98.0
Q ss_pred eEEEEEcCC-CCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeC-C-CcEEEEECCCCCeeEE
Q 004207 558 VESCHFSPD-GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-D-RTVRVWDTENPDYSLR 634 (768)
Q Consensus 558 I~sl~fSpd-g~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~-D-gtIrVWDl~t~~~~~~ 634 (768)
...|++.+. ++++++-...+.|.++++........+.........|+++|.+.+|+.+.. . +.|.+++++.... ..
T Consensus 455 P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~-~~ 533 (699)
T 1n7d_A 455 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YS 533 (699)
T ss_dssp CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC-CE
T ss_pred cceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe-eE
Confidence 456777754 444555456788999998765444433333345678899997655555443 2 6788887764332 12
Q ss_pred EeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec---CCCeeEEEEecCCCEEEEE-EcCCeEEEEE
Q 004207 635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC---QSGATQMRFQPRLGRILAA-AIENYISILD 710 (768)
Q Consensus 635 ~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~---~~~i~sl~fsp~~~~llag-s~Dg~I~IwD 710 (768)
.....-.....|+|++++..|+++-...+.|.++|+........+.. ......|++..+ .|+++ ...+.|..+|
T Consensus 534 l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~--~lywtd~~~~~V~~~d 611 (699)
T 1n7d_A 534 LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED--KVFWTDIINEAIFSAN 611 (699)
T ss_dssp ESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT--EEEEECSTTTCEEEEE
T ss_pred EEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC--EEEEEeCCCCeEEEEE
Confidence 22222345678999998888888877788999999874333222221 122445666554 44444 4567899999
Q ss_pred CCCceEeee
Q 004207 711 VETQVCRLK 719 (768)
Q Consensus 711 ~~t~~~~~~ 719 (768)
..++.....
T Consensus 612 ~~~G~~~~~ 620 (699)
T 1n7d_A 612 RLTGSDVNL 620 (699)
T ss_dssp TTTEEEEEC
T ss_pred ccCCCceEE
Confidence 877665443
No 309
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.31 E-value=0.17 Score=52.27 Aligned_cols=145 Identities=8% Similarity=0.098 Sum_probs=74.1
Q ss_pred CCCEEEEEeCC-----CcEEEEECCCCe-----EEEEeccCCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCC
Q 004207 566 DGKLLATGGHD-----KKAVLWCTESFT-----VKSTLEEHTQWITDVRFSPSLSRLATSSAD-----RTVRVWDTENPD 630 (768)
Q Consensus 566 dg~~LaSgs~D-----g~I~VWdl~t~~-----~~~tl~~h~~~V~sl~fspdg~~LaTgs~D-----gtIrVWDl~t~~ 630 (768)
++.+++.|+.+ ..+.+||..+.+ .+..+........++.+ ++.+++.|+.+ ..+.+||+.+..
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~ 139 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQ 139 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCe
Confidence 56777777755 368999987755 22222222222223333 46667777654 368899988765
Q ss_pred eeEEEeecCCCCeEEEEEeCCCCeEEEEEeCC-----CcEEEEECCCCeeEEEEecCCC--eeEEEEecCCCEEEEEEcC
Q 004207 631 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGRILAAAIE 703 (768)
Q Consensus 631 ~~~~~~~~h~~~V~slafsp~g~~lLaSgs~D-----g~I~iWDl~sg~~i~~~~~~~~--i~sl~fsp~~~~llags~D 703 (768)
............-.+++.. + ..+++.|+.+ ..+.+||+.+.+-...-..... ..+++.. ++..++.|+.+
T Consensus 140 W~~~~~~p~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~ 216 (301)
T 2vpj_A 140 WSMLGDMQTAREGAGLVVA-S-GVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL-NDHIYVVGGFD 216 (301)
T ss_dssp EEEEEECSSCCBSCEEEEE-T-TEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCBC
T ss_pred EEECCCCCCCcccceEEEE-C-CEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE-CCEEEEEeCCC
Confidence 4222111111111222222 3 4577777654 4688999987755433221111 1122222 33445555543
Q ss_pred -----CeEEEEECCCce
Q 004207 704 -----NYISILDVETQV 715 (768)
Q Consensus 704 -----g~I~IwD~~t~~ 715 (768)
+.|.+||+.+..
T Consensus 217 ~~~~~~~v~~yd~~~~~ 233 (301)
T 2vpj_A 217 GTAHLSSVEAYNIRTDS 233 (301)
T ss_dssp SSSBCCCEEEEETTTTE
T ss_pred CCcccceEEEEeCCCCc
Confidence 356677776654
No 310
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.27 E-value=0.56 Score=50.58 Aligned_cols=153 Identities=10% Similarity=0.027 Sum_probs=94.5
Q ss_pred CCeEEEEEcC--CCC-EEEEEe-C--CCcEEEEECCCC--e--EEEEeccC-CCCEEEEEEcCCCCEEEEEeC-------
Q 004207 556 SKVESCHFSP--DGK-LLATGG-H--DKKAVLWCTESF--T--VKSTLEEH-TQWITDVRFSPSLSRLATSSA------- 617 (768)
Q Consensus 556 ~~I~sl~fSp--dg~-~LaSgs-~--Dg~I~VWdl~t~--~--~~~tl~~h-~~~V~sl~fspdg~~LaTgs~------- 617 (768)
-....|.+.+ ++. +|+++. . +.+|-||+++.. . .+.++.+. -...+++++.++|.++++...
T Consensus 112 f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~ 191 (355)
T 3sre_A 112 FNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYL 191 (355)
T ss_dssp CCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHH
T ss_pred eeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCccc
Confidence 3566677655 454 444443 2 457778776542 2 23344332 235789999999987777641
Q ss_pred ----------CCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCC-Cee--EEEEecCCC
Q 004207 618 ----------DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSC--AGVFKCQSG 684 (768)
Q Consensus 618 ----------DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~s-g~~--i~~~~~~~~ 684 (768)
.|.|..||. ++ +..+...-...+.|+|+|+++.++++-+..+.|..||+.. ++. ...+.....
T Consensus 192 ~~~e~~~~~~~g~vyr~d~--~~--~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~g~ 267 (355)
T 3sre_A 192 KSWEMHLGLAWSFVTYYSP--ND--VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTL 267 (355)
T ss_dssp HHHHHHTTCCCEEEEEECT--TC--CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSE
T ss_pred ccchhhccCCccEEEEEEC--Ce--EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeCCCC
Confidence 234544544 33 2223333356789999999998888888889999999863 332 234444556
Q ss_pred eeEEEEec-CCCEEEEEEcC-CeEEEEECC
Q 004207 685 ATQMRFQP-RLGRILAAAIE-NYISILDVE 712 (768)
Q Consensus 685 i~sl~fsp-~~~~llags~D-g~I~IwD~~ 712 (768)
.-.+++.+ +|+..+++..+ +.|..||..
T Consensus 268 PDGi~vD~e~G~lwva~~~~g~~v~~~~P~ 297 (355)
T 3sre_A 268 VDNISVDPVTGDLWVGCHPNGMRIFFYDAE 297 (355)
T ss_dssp EEEEEECTTTCCEEEEEESCHHHHHSCCTT
T ss_pred CceEEEeCCCCcEEEEecCCceEEEEECCC
Confidence 77899999 47766656544 345555554
No 311
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.23 E-value=0.22 Score=54.87 Aligned_cols=149 Identities=13% Similarity=0.118 Sum_probs=92.5
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCeeEEEeecC----CCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCe--------
Q 004207 607 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGH----STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-------- 674 (768)
Q Consensus 607 pdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h----~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~-------- 674 (768)
.++..++.+ .++.||..++.... ..+.+... -..|..+..+|+|..+.+.| +..|.|..+..+.
T Consensus 30 ~n~t~i~~a-~~n~iR~~~i~~~~-~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g--~~~V~Vv~LP~~~~~~~~~~~ 105 (452)
T 3pbp_A 30 QNGTRIVFI-QDNIIRWYNVLTDS-LYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN--DNEIFVMEVPWGYSNVEDVSI 105 (452)
T ss_dssp TTTTEEEEE-ETTEEEEEETTTCS-SCEEEECTTTCCCCTTCEEEECTTSSEEEEEC--SSEEEEEECCTTCSCCCCHHH
T ss_pred cCCCEEEEE-ECCEEEEEECCCCC-cceEEecCcccccCceeEEEECCCCCEEEEec--CCeEEEEEecCccccCccccc
Confidence 344555554 34677777776332 13333322 23578899999988554443 5689998887321
Q ss_pred ----eEEEEec-------CCCeeEEEEecCC---CEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCC
Q 004207 675 ----CAGVFKC-------QSGATQMRFQPRL---GRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHD 740 (768)
Q Consensus 675 ----~i~~~~~-------~~~i~sl~fsp~~---~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~ 740 (768)
..+.+.. ..+|..+.|||-+ ..|++-..|+.|++||+....... . ..+.. ...+.+....
T Consensus 106 ~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P----~-~L~k~-~~~fg~d~~~ 179 (452)
T 3pbp_A 106 QDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKP----I-VLNKP-NNSFGLDARV 179 (452)
T ss_dssp HHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCC----E-EESCC-CSEEESCSSC
T ss_pred ccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCC----c-chhcc-ccccCCCccc
Confidence 1223332 3569999999954 579999999999999998622111 1 11111 1223444556
Q ss_pred CCeeEEEEeCCCCEEEEEE--CCCcEE
Q 004207 741 KLVSSLAASTVNGMVASAS--HDKCVK 765 (768)
Q Consensus 741 ~~I~sla~spdg~~LaSgs--~DG~V~ 765 (768)
..|.+++|..++-.|+..+ .+|-|+
T Consensus 180 ~ev~S~~Fg~~~lTLYvl~~t~~GDIY 206 (452)
T 3pbp_A 180 NDITDLEFSKDGLTLYCLNTTEGGDIF 206 (452)
T ss_dssp CCEEEEEECTTSSCEEEEECTTSCEEE
T ss_pred ceEEEEEEcCCCcEEEEEecCCCCCEE
Confidence 7899999999876666654 778775
No 312
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=96.18 E-value=0.083 Score=59.66 Aligned_cols=162 Identities=11% Similarity=0.090 Sum_probs=92.0
Q ss_pred CEEEEEEcC-CCCEEEEEeC-CCcEEEEECCCCCeeEEEeecC----CCCeEEEEE-------eCCCCeEEEEEeCCC--
Q 004207 599 WITDVRFSP-SLSRLATSSA-DRTVRVWDTENPDYSLRTFTGH----STTVMSLDF-------HPSKEDLLCSCDNNS-- 663 (768)
Q Consensus 599 ~V~sl~fsp-dg~~LaTgs~-DgtIrVWDl~t~~~~~~~~~~h----~~~V~slaf-------sp~g~~lLaSgs~Dg-- 663 (768)
....|+|+| +...|+.+.. .+.|++.|++.+.. ..+... ......|+| ++++..++++...++
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v--~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~ 217 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRML--SSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKG 217 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEE--EEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEE--EEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCc
Confidence 467899998 3445555544 46788899887553 333221 235899999 999987777766542
Q ss_pred ----cEEEEECCC-CeeE-----EEEecCCCeeEEEEecCCCEEEEEE-cCCeEEEEECC-------CceEeeecceeEE
Q 004207 664 ----EIRYWSINN-GSCA-----GVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVE-------TQVCRLKLQTLEL 725 (768)
Q Consensus 664 ----~I~iWDl~s-g~~i-----~~~~~~~~i~sl~fsp~~~~llags-~Dg~I~IwD~~-------t~~~~~~~~~I~i 725 (768)
.|.+++... +... ..+........++++|++++|+++. .++.|..||+. ++..-.... .
T Consensus 218 ~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~---~ 294 (496)
T 3kya_A 218 DESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIV---K 294 (496)
T ss_dssp GGEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBG---G
T ss_pred ccCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccc---c
Confidence 266776443 2221 2222223456788899767766655 56779999987 333200000 0
Q ss_pred eecC-CCceEEeccCCCCeeEEEEeCCCCEEEEEE-CCCcEEE
Q 004207 726 WNMT-ENKTLTLSAHDKLVSSLAASTVNGMVASAS-HDKCVKI 766 (768)
Q Consensus 726 wd~~-~~~~~~l~~H~~~I~sla~spdg~~LaSgs-~DG~V~I 766 (768)
|... ...+... +.....+.|+|+|++++|+.+. ....|+.
T Consensus 295 ~~~g~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~h~I~k 336 (496)
T 3kya_A 295 NNPNTFKQLFTI-ADPSWEFQIFIHPTGKYAYFGVINNHYFMR 336 (496)
T ss_dssp GCTTTEEEEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEE
T ss_pred ccccccceeEec-CCCCCceEEEEcCCCCEEEEEeCCCCEEEE
Confidence 0000 0011111 2234467899999998655554 3455554
No 313
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.08 E-value=0.27 Score=54.09 Aligned_cols=142 Identities=13% Similarity=0.084 Sum_probs=93.3
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCeEEEEeccC----CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC----------
Q 004207 565 PDGKLLATGGHDKKAVLWCTESFTVKSTLEEH----TQWITDVRFSPSLSRLATSSADRTVRVWDTENPD---------- 630 (768)
Q Consensus 565 pdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h----~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~---------- 630 (768)
.+|.-++.+- ++.||..++......+.+... -..|..+..+|+|++||..+ +.+|.|..+..+.
T Consensus 30 ~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~ 107 (452)
T 3pbp_A 30 QNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQD 107 (452)
T ss_dssp TTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHH
T ss_pred cCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCccccccc
Confidence 3555555553 467888887644333344322 22578899999999999885 5579998886321
Q ss_pred -eeEEEeec------CCCCeEEEEEeCCCCe--EEEEEeCCCcEEEEECCCC--eeEEEEec----------CCCeeEEE
Q 004207 631 -YSLRTFTG------HSTTVMSLDFHPSKED--LLCSCDNNSEIRYWSINNG--SCAGVFKC----------QSGATQMR 689 (768)
Q Consensus 631 -~~~~~~~~------h~~~V~slafsp~g~~--lLaSgs~Dg~I~iWDl~sg--~~i~~~~~----------~~~i~sl~ 689 (768)
...+.+.- ...+|..+.|||-+.. .|++-..|+.|++||+... ++. .++. ...|.+++
T Consensus 108 ~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~ 186 (452)
T 3pbp_A 108 AFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLE 186 (452)
T ss_dssp TTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEE
T ss_pred ccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEE
Confidence 11223322 2467999999997543 5667778999999999852 222 3321 14588999
Q ss_pred EecCCCEEEEEE--cCCeEEEE
Q 004207 690 FQPRLGRILAAA--IENYISIL 709 (768)
Q Consensus 690 fsp~~~~llags--~Dg~I~Iw 709 (768)
|..++-.|++.+ .+|.|+-+
T Consensus 187 Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 187 FSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp ECTTSSCEEEEECTTSCEEEEE
T ss_pred EcCCCcEEEEEecCCCCCEEEE
Confidence 999776787766 67877654
No 314
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.02 E-value=0.23 Score=53.47 Aligned_cols=145 Identities=12% Similarity=0.074 Sum_probs=82.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-EEEEec---cCCCCEEEEEEcCC---CCEEEEEeC----C----C
Q 004207 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT-VKSTLE---EHTQWITDVRFSPS---LSRLATSSA----D----R 619 (768)
Q Consensus 555 ~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~-~~~tl~---~h~~~V~sl~fspd---g~~LaTgs~----D----g 619 (768)
-....+++|.|||++++ +..+|.|++++. +++ .+..+. ........|+|+|+ +..|+++.. + .
T Consensus 28 l~~P~~ia~~pdG~l~V-~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLV-TERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp CSCEEEEEEEETTEEEE-EETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCCeEEEEcCCCeEEE-EeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence 34578999999998555 456699999974 444 222221 12346889999997 555555433 3 5
Q ss_pred cEEEEECCCCC------e-eEEEeec-CCCCeEEEEEeCCCCeEEEEEeC------------CCcEEEEECCCCee----
Q 004207 620 TVRVWDTENPD------Y-SLRTFTG-HSTTVMSLDFHPSKEDLLCSCDN------------NSEIRYWSINNGSC---- 675 (768)
Q Consensus 620 tIrVWDl~t~~------~-~~~~~~~-h~~~V~slafsp~g~~lLaSgs~------------Dg~I~iWDl~sg~~---- 675 (768)
.|..|+..... . .+..+.. .......|+|.|+|..++..++. .|.|.-+|.. ++.
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~d-G~~p~~n 184 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEE-GRPPADN 184 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTT-SCCCTTS
T ss_pred EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCC-CCCCCCC
Confidence 67778776431 1 1111221 11234679999998744433321 2456656654 220
Q ss_pred ----EEEE-ecCCCeeEEEEecCCCEEEEEEc
Q 004207 676 ----AGVF-KCQSGATQMRFQPRLGRILAAAI 702 (768)
Q Consensus 676 ----i~~~-~~~~~i~sl~fsp~~~~llags~ 702 (768)
...+ ........++|+|+.+.|+++..
T Consensus 185 pf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~ 216 (354)
T 3a9g_A 185 PFPNSPIWSYGHRNPQGIDWHRASGVMVATEH 216 (354)
T ss_dssp SSTTCCEEEECCSCCCEEEECTTTCCEEEEEC
T ss_pred CCCCCcEEEEccCCcceEEEeCCCCCEEEEec
Confidence 1112 12345678999995555666554
No 315
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=95.89 E-value=0.007 Score=67.42 Aligned_cols=13 Identities=15% Similarity=0.378 Sum_probs=6.2
Q ss_pred hhhhHHHHHHhhh
Q 004207 53 FEWWSVFWDIFIA 65 (768)
Q Consensus 53 ~eww~~FWdlf~A 65 (768)
.+.|.++.+.+..
T Consensus 337 ~~~~~~~~~~~~~ 349 (449)
T 3iot_A 337 SAFWYAVRTAVIN 349 (449)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3445555554443
No 316
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=95.85 E-value=0.43 Score=49.13 Aligned_cols=143 Identities=12% Similarity=0.059 Sum_probs=73.0
Q ss_pred CCCEEEEEeCC-----CcEEEEECCCCeEE--EEeccCCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCCeeE
Q 004207 566 DGKLLATGGHD-----KKAVLWCTESFTVK--STLEEHTQWITDVRFSPSLSRLATSSAD-----RTVRVWDTENPDYSL 633 (768)
Q Consensus 566 dg~~LaSgs~D-----g~I~VWdl~t~~~~--~tl~~h~~~V~sl~fspdg~~LaTgs~D-----gtIrVWDl~t~~~~~ 633 (768)
++++++.|+.+ ..+.+||..+.+-. ..+........++.+ ++++++.|+.+ ..+.+||+.+.....
T Consensus 112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~ 189 (301)
T 2vpj_A 112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTN 189 (301)
T ss_dssp TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEE
T ss_pred CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEe
Confidence 67777777654 35888998775433 222222222223333 56677777654 468999998765422
Q ss_pred EE-eecCCCCeEEEEEeCCCCeEEEEEeCC-----CcEEEEECCCCeeEEEEecCC--CeeEEEEecCCCEEEEEEcC--
Q 004207 634 RT-FTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSCAGVFKCQS--GATQMRFQPRLGRILAAAIE-- 703 (768)
Q Consensus 634 ~~-~~~h~~~V~slafsp~g~~lLaSgs~D-----g~I~iWDl~sg~~i~~~~~~~--~i~sl~fsp~~~~llags~D-- 703 (768)
.. .........++.+ ++.+++.|+.+ ..|.+||+.+.+-...-.... ...+++.. ++..++.|+.+
T Consensus 190 ~~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~ 265 (301)
T 2vpj_A 190 VTPMATKRSGAGVALL---NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL-RGRLYAIAGYDGN 265 (301)
T ss_dssp ECCCSSCCBSCEEEEE---TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCBCSS
T ss_pred CCCCCcccccceEEEE---CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE-CCEEEEEcCcCCC
Confidence 11 1111111122222 34577777654 468999998776543322111 11122222 34445555544
Q ss_pred ---CeEEEEECCCc
Q 004207 704 ---NYISILDVETQ 714 (768)
Q Consensus 704 ---g~I~IwD~~t~ 714 (768)
..|.+||+++.
T Consensus 266 ~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 266 SLLSSIECYDPIID 279 (301)
T ss_dssp SBEEEEEEEETTTT
T ss_pred cccccEEEEcCCCC
Confidence 24556666554
No 317
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=95.84 E-value=0.48 Score=59.13 Aligned_cols=170 Identities=10% Similarity=0.077 Sum_probs=98.8
Q ss_pred cEEEEECCCCeEEEEecc-CCCCEEEEEE---cCC-CCEEEEEe----------CCCcEEEEECCCCCeeEEEeecCCCC
Q 004207 578 KAVLWCTESFTVKSTLEE-HTQWITDVRF---SPS-LSRLATSS----------ADRTVRVWDTENPDYSLRTFTGHSTT 642 (768)
Q Consensus 578 ~I~VWdl~t~~~~~tl~~-h~~~V~sl~f---spd-g~~LaTgs----------~DgtIrVWDl~t~~~~~~~~~~h~~~ 642 (768)
.|++.|-.+++.+..+.- ....+.|++. ..+ ..+|++|. ..|.|++|++...+..+......+++
T Consensus 808 ~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~ 887 (1158)
T 3ei3_A 808 NLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGA 887 (1158)
T ss_dssp EEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSC
T ss_pred EEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCc
Confidence 467777777776655532 2334555553 322 46888876 34789999997544333333445788
Q ss_pred eEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEE-EEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecc
Q 004207 643 VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG-VFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ 721 (768)
Q Consensus 643 V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~-~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~ 721 (768)
|++|+--. .+++++. ..+|++|++...+.++ .......+..+.....++++++|..-..|.++.
T Consensus 888 v~al~~~~--g~Lla~i--g~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~----------- 952 (1158)
T 3ei3_A 888 VYSMVEFN--GKLLASI--NSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLA----------- 952 (1158)
T ss_dssp EEEEEEET--TEEEEEE--TTEEEEEEECTTSCEEEEEEECCCSCEEEEEEETTEEEEEESSBCEEEEE-----------
T ss_pred CEEEeeeC--CEEEEEc--CCEEEEEECCCCceEEEEeeccccEEEEEEeccCCEEEEEEhhheEEEEE-----------
Confidence 99987542 3455444 4689999998655433 111122233333333456777777655555433
Q ss_pred eeEEeecCCCceEEec--cCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 004207 722 TLELWNMTENKTLTLS--AHDKLVSSLAASTVNGMVASASHDKCVKIW 767 (768)
Q Consensus 722 ~I~iwd~~~~~~~~l~--~H~~~I~sla~spdg~~LaSgs~DG~V~IW 767 (768)
|+...++...+. .+...++++.+-.+ ..++.+..+|.|.++
T Consensus 953 ----y~~~~~~L~~~a~D~~~~~vta~~~ld~-~t~l~aD~~gNl~vl 995 (1158)
T 3ei3_A 953 ----YKPMEGNFEEIARDFNPNWMSAVEILDD-DNFLGAENAFNLFVC 995 (1158)
T ss_dssp ----EETTTTEEEEEEECCSCBCEEEEEEEET-TEEEEEETTSEEEEE
T ss_pred ----EEcCCCeEEEEEeecccccEEEEEEEcc-CcEEEEcCCCcEEEE
Confidence 222223333222 34556888887654 467778889988775
No 318
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=95.75 E-value=0.53 Score=49.46 Aligned_cols=140 Identities=7% Similarity=0.013 Sum_probs=85.2
Q ss_pred EEEcCCCCEEEEEeCC--------------CcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEe--CCC--cEE
Q 004207 561 CHFSPDGKLLATGGHD--------------KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS--ADR--TVR 622 (768)
Q Consensus 561 l~fSpdg~~LaSgs~D--------------g~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs--~Dg--tIr 622 (768)
--+++++++|+-+... ..|+..+++..+... +.. .. +..|++++++|+-.. .++ .|+
T Consensus 58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~-l~~--~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy 132 (302)
T 3s25_A 58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV-LDP--DP--CIYASLIGNYIYYLHYDTQTATSLY 132 (302)
T ss_dssp EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE-EEC--SC--EEEEEEETTEEEEEEESSSSCEEEE
T ss_pred eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE-eec--CC--ccEEEEeCCEEEEEeecCCCCceEE
Confidence 4557788887766542 357777777655332 221 11 236777888888776 333 555
Q ss_pred EEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEc
Q 004207 623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI 702 (768)
Q Consensus 623 VWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~ 702 (768)
.-+++... ...+..+.. ..|+++++.++.+......|.+.++..+.....+. +... ..++|++++|+....
T Consensus 133 ~~~~dGs~--~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~--~~~~-~~~~P~g~~iy~t~~ 203 (302)
T 3s25_A 133 RIRIDGEE--KKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD--CNCY-KPVVLDDTNVYYMDV 203 (302)
T ss_dssp EEETTSCC--CEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC--SCEE-EEEEEETTEEEEEEG
T ss_pred EEECCCCC--eEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC--CCcc-ceeeecCCEEEEEEc
Confidence 55665433 344443432 34577788888776657789999988766544443 2332 346688999888775
Q ss_pred C--CeEEEEECCCc
Q 004207 703 E--NYISILDVETQ 714 (768)
Q Consensus 703 D--g~I~IwD~~t~ 714 (768)
+ ..|..-++...
T Consensus 204 ~~~~~I~~~~ldG~ 217 (302)
T 3s25_A 204 NRDNAIVHVNINNP 217 (302)
T ss_dssp GGTTEEEEECSSSC
T ss_pred CCCcEEEEEECCCC
Confidence 4 35666666554
No 319
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=95.72 E-value=0.43 Score=49.22 Aligned_cols=143 Identities=10% Similarity=0.079 Sum_probs=71.5
Q ss_pred CCCEEEEEeCCC-----cEEEEECCCCeEEEE--eccCCCCEEEEEEcCCCCEEEEEeCC-------CcEEEEECCCCCe
Q 004207 566 DGKLLATGGHDK-----KAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSAD-------RTVRVWDTENPDY 631 (768)
Q Consensus 566 dg~~LaSgs~Dg-----~I~VWdl~t~~~~~t--l~~h~~~V~sl~fspdg~~LaTgs~D-------gtIrVWDl~t~~~ 631 (768)
++++++.|+.++ .+.+||..+.+-... +........++.+ ++++++.|+.+ ..+.+||+.+...
T Consensus 108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W 185 (302)
T 2xn4_A 108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNEW 185 (302)
T ss_dssp TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTEE
T ss_pred CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCcE
Confidence 677777777653 477888877553322 1111112222333 45666666543 3588999987653
Q ss_pred eEE-EeecCCCCeEEEEEeCCCCeEEEEEeCC-----CcEEEEECCCCeeEEEEecCC--CeeEEEEecCCCEEEEEEcC
Q 004207 632 SLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSCAGVFKCQS--GATQMRFQPRLGRILAAAIE 703 (768)
Q Consensus 632 ~~~-~~~~h~~~V~slafsp~g~~lLaSgs~D-----g~I~iWDl~sg~~i~~~~~~~--~i~sl~fsp~~~~llags~D 703 (768)
... ......... +++.. ++.+++.|+.+ ..|.+||+.+.+-...-.... .-..++.. ++..++.|+.+
T Consensus 186 ~~~~~~p~~r~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~i~v~GG~~ 261 (302)
T 2xn4_A 186 TYIAEMSTRRSGA-GVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAV-NGLLYVVGGDD 261 (302)
T ss_dssp EEECCCSSCCBSC-EEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCBC
T ss_pred EECCCCccccccc-cEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEE-CCEEEEECCcC
Confidence 221 111111112 22222 24577777654 468899998765443322111 11122222 34455555544
Q ss_pred C-----eEEEEECCCc
Q 004207 704 N-----YISILDVETQ 714 (768)
Q Consensus 704 g-----~I~IwD~~t~ 714 (768)
+ .|.+||+.+.
T Consensus 262 ~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 262 GSCNLASVEYYNPTTD 277 (302)
T ss_dssp SSSBCCCEEEEETTTT
T ss_pred CCcccccEEEEcCCCC
Confidence 2 3566666554
No 320
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=95.72 E-value=0.52 Score=50.68 Aligned_cols=150 Identities=11% Similarity=0.113 Sum_probs=85.1
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEE--EEe----ccCCCCEEEEEEcCC---CCEEEEE---eC
Q 004207 550 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK--STL----EEHTQWITDVRFSPS---LSRLATS---SA 617 (768)
Q Consensus 550 ~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~--~tl----~~h~~~V~sl~fspd---g~~LaTg---s~ 617 (768)
.+...-..-..|+|.|||.+|++--..|.|++++..+++.. ..+ .........|+|+|+ +..|+.. ..
T Consensus 26 ~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~ 105 (347)
T 3das_A 26 TVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSAS 105 (347)
T ss_dssp EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSS
T ss_pred EeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCC
Confidence 33344455789999999997777655899999986655432 222 123456899999995 3444443 23
Q ss_pred CCcEEEEECCCC----------CeeEEEee-cCCCCeEEEEEeCCCCeEEEEEe------------CCCcEEEEECCCCe
Q 004207 618 DRTVRVWDTENP----------DYSLRTFT-GHSTTVMSLDFHPSKEDLLCSCD------------NNSEIRYWSINNGS 674 (768)
Q Consensus 618 DgtIrVWDl~t~----------~~~~~~~~-~h~~~V~slafsp~g~~lLaSgs------------~Dg~I~iWDl~sg~ 674 (768)
++.|.-|.+... +..+..+. ........|.|.|+|..++.+|+ ..|.|.-++.. ++
T Consensus 106 ~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~d-G~ 184 (347)
T 3das_A 106 DNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPD-GE 184 (347)
T ss_dssp SEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTT-SS
T ss_pred CCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCC-CC
Confidence 456666665541 11112221 11223567999999864443342 13455555544 22
Q ss_pred e--------EEEEe-cCCCeeEEEEecCCCEEEEEE
Q 004207 675 C--------AGVFK-CQSGATQMRFQPRLGRILAAA 701 (768)
Q Consensus 675 ~--------i~~~~-~~~~i~sl~fsp~~~~llags 701 (768)
. ...+. .......++|+|++. |+++-
T Consensus 185 ip~~nPf~~~~i~a~G~RNp~Gla~dp~G~-L~~~d 219 (347)
T 3das_A 185 PAPGNPFPGSPVYSYGHRNVQGLAWDDKQR-LFASE 219 (347)
T ss_dssp BCTTCSSTTCCEEEBCCSBCCEEEECTTCC-EEEEE
T ss_pred ccCCCCCCCCeEEeeCCCCcceEEECCCCC-EEEEe
Confidence 0 11222 234567899999754 55544
No 321
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=95.71 E-value=1.9 Score=47.60 Aligned_cols=157 Identities=10% Similarity=0.169 Sum_probs=101.7
Q ss_pred CCeEEEEEcCCCCEEEEEeC-------CCcEEEEECCCCeEEEEeccCCCCEEEEEEcCC---CCEEEEEeCC---CcEE
Q 004207 556 SKVESCHFSPDGKLLATGGH-------DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS---LSRLATSSAD---RTVR 622 (768)
Q Consensus 556 ~~I~sl~fSpdg~~LaSgs~-------Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspd---g~~LaTgs~D---gtIr 622 (768)
..|..-..+++.+|++..+- .|.+.+|.++. +.-..+++|......+.+.-+ ..+|+.+... +.++
T Consensus 151 ~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLh 229 (494)
T 1bpo_A 151 CQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLH 229 (494)
T ss_dssp CEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT-CCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEE
T ss_pred ceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc-cccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEE
Confidence 45777788889998764432 46788999875 555678888766555544322 2245555443 7899
Q ss_pred EEECCCC--------CeeEEEee---cCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEE
Q 004207 623 VWDTENP--------DYSLRTFT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRF 690 (768)
Q Consensus 623 VWDl~t~--------~~~~~~~~---~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~f 690 (768)
|-++... +..+..+. .-.+...++..++.-. +++.-+.-|.|++||++++.++..-.. ...|...+.
T Consensus 230 i~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kyg-viyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~ 308 (494)
T 1bpo_A 230 IIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD-VVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAP 308 (494)
T ss_dssp EEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTT-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred EEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCC-EEEEEecCceEEEEecccceeeeeecccCCceEEecc
Confidence 9998653 11111111 1234566788887755 566777899999999999999887664 444555555
Q ss_pred ecCCCEEEEEEcCCeEEEEECCCc
Q 004207 691 QPRLGRILAAAIENYISILDVETQ 714 (768)
Q Consensus 691 sp~~~~llags~Dg~I~IwD~~t~ 714 (768)
+...+-+++....|.|.-..++..
T Consensus 309 ~~~~~Gi~~Vnr~GqVl~v~v~e~ 332 (494)
T 1bpo_A 309 HEATAGIIGVNRKGQVLSVCVEEE 332 (494)
T ss_dssp ETTTTEEEEEETTCEEEEEEECTT
T ss_pred cCCCCcEEEEccCceEEEEEEccc
Confidence 555566777778887766655544
No 322
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=95.67 E-value=1.6 Score=46.50 Aligned_cols=157 Identities=10% Similarity=0.168 Sum_probs=98.3
Q ss_pred CCeEEEEEcCCCCEEEEEeC-------CCcEEEEECCCCeEEEEeccCCCCEEEEEEcCC---CCEEEEEeC---CCcEE
Q 004207 556 SKVESCHFSPDGKLLATGGH-------DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS---LSRLATSSA---DRTVR 622 (768)
Q Consensus 556 ~~I~sl~fSpdg~~LaSgs~-------Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspd---g~~LaTgs~---DgtIr 622 (768)
..|..-..+++.+|++..+- .|.+.+|..+. +.-..+++|......+.+.-+ ..+|+.+.. .+.++
T Consensus 152 ~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLh 230 (365)
T 2xzh_A 152 CQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLH 230 (365)
T ss_dssp CEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT-TEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEE
T ss_pred ceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecc-cccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEE
Confidence 45777788888898765432 36788999875 555678888765444433221 123444433 25899
Q ss_pred EEECCCC---C-----eeEEEeec---CCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEE
Q 004207 623 VWDTENP---D-----YSLRTFTG---HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRF 690 (768)
Q Consensus 623 VWDl~t~---~-----~~~~~~~~---h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~f 690 (768)
|-++... . ..+..+.. -.+...++..++.-. +++.-+.-|.|++||++++.++..-+. ...|...+.
T Consensus 231 IiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kyg-viyviTK~G~ihlyDleTgt~i~~nrIS~d~iF~ta~ 309 (365)
T 2xzh_A 231 IIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD-VVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAP 309 (365)
T ss_dssp EEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTT-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred EEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCC-EEEEEeCCcEEEEEEcccCcEEEEeccCCCceEEecc
Confidence 9998543 1 11222221 234566777777655 566777889999999999999987664 344544455
Q ss_pred ecCCCEEEEEEcCCeEEEEECCCc
Q 004207 691 QPRLGRILAAAIENYISILDVETQ 714 (768)
Q Consensus 691 sp~~~~llags~Dg~I~IwD~~t~ 714 (768)
+...+-+++....|.|.-..++..
T Consensus 310 ~~~~~Gi~~Vnr~GqVl~v~v~~~ 333 (365)
T 2xzh_A 310 HEATAGIIGVNRKGQVLSVCVEEE 333 (365)
T ss_dssp EGGGTEEEEEETTCEEEEEEECTT
T ss_pred cCCCCcEEEEcCCCEEEEEEECcc
Confidence 555555666677777765555443
No 323
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=95.59 E-value=0.015 Score=62.53 Aligned_cols=143 Identities=8% Similarity=0.006 Sum_probs=84.9
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEeccC-CCCEEEEEEc--C-CCCEEEEE-eCCCcEEEEECCCCCeeEEEeec---C
Q 004207 568 KLLATGGHDKKAVLWCTESFTVKSTLEEH-TQWITDVRFS--P-SLSRLATS-SADRTVRVWDTENPDYSLRTFTG---H 639 (768)
Q Consensus 568 ~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h-~~~V~sl~fs--p-dg~~LaTg-s~DgtIrVWDl~t~~~~~~~~~~---h 639 (768)
.++++++.||.|.-+|.++|+.+.++... ..++....-. + ++..++.. +.||.|..+|..++......-.. .
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 36888999999999999999999998654 1222221110 1 22333333 58999999998876432211111 1
Q ss_pred CCCeEE---EEE-eC---CCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCe--------eEEEEe-----cCCCEEEE
Q 004207 640 STTVMS---LDF-HP---SKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA--------TQMRFQ-----PRLGRILA 699 (768)
Q Consensus 640 ~~~V~s---laf-sp---~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i--------~sl~fs-----p~~~~lla 699 (768)
..++.. ... .+ .....+++|+.+|.+...|+++|+.+..+...... .|.... ..+..++.
T Consensus 91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~i 170 (339)
T 2be1_A 91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVI 170 (339)
T ss_dssp TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEEE
T ss_pred ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEE
Confidence 122221 000 00 01346678999999999999999999998754321 111111 12356777
Q ss_pred EEcCCeEEEEE
Q 004207 700 AAIENYISILD 710 (768)
Q Consensus 700 gs~Dg~I~IwD 710 (768)
+..+..|.+.+
T Consensus 171 g~~~y~v~~~~ 181 (339)
T 2be1_A 171 GKTIFELGIHS 181 (339)
T ss_dssp EEEEEECEECC
T ss_pred ecceEEEEEEC
Confidence 77777777776
No 324
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.47 E-value=0.6 Score=52.02 Aligned_cols=105 Identities=17% Similarity=0.165 Sum_probs=62.1
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEE--EEecc------CCCCEEEEEEcCC---CCEEEEEeC-------
Q 004207 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK--STLEE------HTQWITDVRFSPS---LSRLATSSA------- 617 (768)
Q Consensus 556 ~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~--~tl~~------h~~~V~sl~fspd---g~~LaTgs~------- 617 (768)
....+|+|.|+|+++++-...+.|++++..+++.. ..+.. ....+..|+|+|+ +..|+.+..
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 35779999999997776544457888876555432 22321 2356789999995 555554432
Q ss_pred ------CCcEEEEECCCCC-------eeEEEee-cCCCCeEEEEEeCCCCeEEEEEe
Q 004207 618 ------DRTVRVWDTENPD-------YSLRTFT-GHSTTVMSLDFHPSKEDLLCSCD 660 (768)
Q Consensus 618 ------DgtIrVWDl~t~~-------~~~~~~~-~h~~~V~slafsp~g~~lLaSgs 660 (768)
...|.-|++.... ..+..+. ........|+|.|+|..++++|+
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 2356666654321 1111121 11234789999999975555553
No 325
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=95.44 E-value=1.6 Score=45.34 Aligned_cols=150 Identities=8% Similarity=0.008 Sum_probs=72.9
Q ss_pred EEEEEcCCCCEEEEEeC----C-------CcEEEEECCCCeEEEE--eccCCCCEEEEEEcCCCCEEEEEeCC-------
Q 004207 559 ESCHFSPDGKLLATGGH----D-------KKAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSAD------- 618 (768)
Q Consensus 559 ~sl~fSpdg~~LaSgs~----D-------g~I~VWdl~t~~~~~t--l~~h~~~V~sl~fspdg~~LaTgs~D------- 618 (768)
...+...++.+++.|+. + ..+.+||..+.+-... +.........+.+ ++.+++.|+.+
T Consensus 38 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~ 115 (315)
T 4asc_A 38 HVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERC 115 (315)
T ss_dssp EEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCB
T ss_pred ceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcc
Confidence 33344457888888873 1 1277888877653221 1111111122222 45666666632
Q ss_pred -CcEEEEECCCCCeeEE-EeecCCCCeEEEEEeCCCCeEEEEEeC-C-----CcEEEEECCCCeeEEEEecC--CCeeEE
Q 004207 619 -RTVRVWDTENPDYSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDN-N-----SEIRYWSINNGSCAGVFKCQ--SGATQM 688 (768)
Q Consensus 619 -gtIrVWDl~t~~~~~~-~~~~h~~~V~slafsp~g~~lLaSgs~-D-----g~I~iWDl~sg~~i~~~~~~--~~i~sl 688 (768)
..+.+||+.+.+.... .+...... .+++.. + ..+++.|+. + ..+.+||+.+.+-...-... ....++
T Consensus 116 ~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~ 192 (315)
T 4asc_A 116 LDSVMCYDRLSFKWGESDPLPYVVYG-HTVLSH-M-DLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGA 192 (315)
T ss_dssp CCCEEEEETTTTEEEECCCCSSCCBS-CEEEEE-T-TEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEE
T ss_pred cceEEEECCCCCcEeECCCCCCcccc-eeEEEE-C-CEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEE
Confidence 3689999987643211 11111111 122222 2 457777765 2 46899999876543322111 111222
Q ss_pred EEecCCCEEEEEEcCC-----eEEEEECCCc
Q 004207 689 RFQPRLGRILAAAIEN-----YISILDVETQ 714 (768)
Q Consensus 689 ~fsp~~~~llags~Dg-----~I~IwD~~t~ 714 (768)
+.. ++..++.|+.++ .+.+||+.+.
T Consensus 193 ~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~ 222 (315)
T 4asc_A 193 TVH-DGRIIVAAGVTDTGLTSSAEVYSITDN 222 (315)
T ss_dssp EEE-TTEEEEEEEECSSSEEEEEEEEETTTT
T ss_pred EEE-CCEEEEEeccCCCCccceEEEEECCCC
Confidence 222 445566666543 3556666554
No 326
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=95.42 E-value=3.5 Score=44.11 Aligned_cols=188 Identities=11% Similarity=0.106 Sum_probs=92.1
Q ss_pred CCCeEEEEEcCC---CCEEEEE-e--CCCcEEEEECCC----------CeEEE-Eec-cCCCCEEEEEEcCCCCEEEEEe
Q 004207 555 TSKVESCHFSPD---GKLLATG-G--HDKKAVLWCTES----------FTVKS-TLE-EHTQWITDVRFSPSLSRLATSS 616 (768)
Q Consensus 555 ~~~I~sl~fSpd---g~~LaSg-s--~Dg~I~VWdl~t----------~~~~~-tl~-~h~~~V~sl~fspdg~~LaTgs 616 (768)
......|+|+|+ +.+|+++ + .+..|.-|.+.. .+.+. .+. ........|+|.||+.++++.+
T Consensus 79 ~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~G 158 (347)
T 3das_A 79 EGGLLGIALSPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTG 158 (347)
T ss_dssp TBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECB
T ss_pred CCCceeeEeccccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEEC
Confidence 456889999995 3444432 2 345666666543 12222 222 1112346799999998777754
Q ss_pred C-------------CCcEEEEECCCC--------CeeEEEeecCCCCeEEEEEeCCCCeEEEEE-eCCCcEEEEECCCCe
Q 004207 617 A-------------DRTVRVWDTENP--------DYSLRTFTGHSTTVMSLDFHPSKEDLLCSC-DNNSEIRYWSINNGS 674 (768)
Q Consensus 617 ~-------------DgtIrVWDl~t~--------~~~~~~~~~h~~~V~slafsp~g~~lLaSg-s~Dg~I~iWDl~sg~ 674 (768)
. .|.|.-.+.+.. .. ...-.+|. ....++|+|++. ++++- +.|+.-.|--+..+.
T Consensus 159 d~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf~~~-~i~a~G~R-Np~Gla~dp~G~-L~~~d~g~~~~deln~i~~G~ 235 (347)
T 3das_A 159 ESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPFPGS-PVYSYGHR-NVQGLAWDDKQR-LFASEFGQDTWDELNAIKPGD 235 (347)
T ss_dssp CTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSSTTC-CEEEBCCS-BCCEEEECTTCC-EEEEECCSSSCEEEEEECTTC
T ss_pred CCCCCccccCCCCCCCEEEEEeCCCCccCCCCCCCC-eEEeeCCC-CcceEEECCCCC-EEEEecCCCCCceeeEEcCCC
Confidence 3 244444454421 11 12223454 466899999865 44332 233322222222221
Q ss_pred ------------------eEEEEecC-CCeeEEEEecCCCEEEEEE-cCCeEEEEECCCceEeeecceeEEeecCCCceE
Q 004207 675 ------------------CAGVFKCQ-SGATQMRFQPRLGRILAAA-IENYISILDVETQVCRLKLQTLELWNMTENKTL 734 (768)
Q Consensus 675 ------------------~i~~~~~~-~~i~sl~fsp~~~~llags-~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~ 734 (768)
.+..+... .....++|.. +.++.+. ....|..+.+...... .....
T Consensus 236 nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~~~--g~~~~~~l~~~~l~~v~~~~~~~~------------~~~e~ 301 (347)
T 3das_A 236 NYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAYAE--GSVWMAGLRGERLWRIPLKGTAAA------------ADPQA 301 (347)
T ss_dssp BCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEEEET--TEEEEEESTTCSEEEEEEETTEES------------SCCEE
T ss_pred EecCCcccCCCCCccccCCcEecCCCCCCCcceEEEc--CceeeccccCCEEEEEEecCCcee------------cceEE
Confidence 11222211 2345566653 2333333 3344444444332110 00011
Q ss_pred EeccCCCCeeEEEEeCCCCEEEEEE
Q 004207 735 TLSAHDKLVSSLAASTVNGMVASAS 759 (768)
Q Consensus 735 ~l~~H~~~I~sla~spdg~~LaSgs 759 (768)
.+.+....+..|+..|||.++++.+
T Consensus 302 ~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 302 FLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp ESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred eecCCCCCccEEEECCCCcEEEEEc
Confidence 2223446799999999998766654
No 327
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=95.37 E-value=3 Score=49.11 Aligned_cols=153 Identities=8% Similarity=-0.004 Sum_probs=91.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEec-c-----CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004207 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-E-----HTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 629 (768)
Q Consensus 556 ~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~-~-----h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~ 629 (768)
..|.++.-..+|.+.+ |+ ++-|.+||..+++...... . ....|.++....++. |..|+..+-|.++|..+.
T Consensus 373 ~~v~~i~~d~~g~lWi-gt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lWigT~~~Gl~~~~~~~~ 449 (758)
T 3ott_A 373 NRIRHIYEDKEQQLWI-AT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQ-LWISTCLGGIFVVDKHKL 449 (758)
T ss_dssp SCEEEEEECTTSCEEE-EE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSE-EEEEESSSCEEEEEHHHH
T ss_pred CceEEEEECCCCCEEE-Ee-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCC-EEEEECCCceEEEccccc
Confidence 4589998887887544 44 4569999988876543221 1 234588888877765 556777667888886521
Q ss_pred -----CeeE--EEeec----CCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec----CCCeeEEEEecCC
Q 004207 630 -----DYSL--RTFTG----HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC----QSGATQMRFQPRL 694 (768)
Q Consensus 630 -----~~~~--~~~~~----h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~----~~~i~sl~fsp~~ 694 (768)
.... ..+.. ....|.+|...++|. +.+.++..+-|..||..+++....... ...+.++....++
T Consensus 450 ~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g 528 (758)
T 3ott_A 450 MQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGN-VWVLLYNNKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDG 528 (758)
T ss_dssp HHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSC-EEEEETTCSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTS
T ss_pred cccCCcceecccccccccccccceeeeEEEcCCCC-EEEEccCCCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCC
Confidence 1111 11111 123588998888876 443233345688899987765543211 2346677777665
Q ss_pred CEEEEEEcCCeEEEEECCCc
Q 004207 695 GRILAAAIENYISILDVETQ 714 (768)
Q Consensus 695 ~~llags~Dg~I~IwD~~t~ 714 (768)
. |..++. +.|..||..+.
T Consensus 529 ~-lWigt~-~Gl~~~~~~~~ 546 (758)
T 3ott_A 529 L-LWVGFH-GGVMRINPKDE 546 (758)
T ss_dssp C-EEEEET-TEEEEECC--C
T ss_pred C-EEEEec-CceEEEecCCC
Confidence 4 555555 45888887554
No 328
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=95.31 E-value=0.72 Score=47.83 Aligned_cols=144 Identities=13% Similarity=0.084 Sum_probs=72.1
Q ss_pred CCCEEEEEeC----C-----CcEEEEECCCCeEEEE--eccCCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCC
Q 004207 566 DGKLLATGGH----D-----KKAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSAD-----RTVRVWDTENP 629 (768)
Q Consensus 566 dg~~LaSgs~----D-----g~I~VWdl~t~~~~~t--l~~h~~~V~sl~fspdg~~LaTgs~D-----gtIrVWDl~t~ 629 (768)
++.+++.|+. + ..+.+||..+.+-... +........++.+ ++.+++.|+.+ ..+.+||+.+.
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~ 147 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERD 147 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTT
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCC
Confidence 5666777665 2 4688899877653321 1111122223333 56666766643 36889998875
Q ss_pred CeeEE-EeecCCCCeEEEEEeCCCCeEEEEEeCC-----CcEEEEECCCCeeEEEEec--CCCeeEEEEecCCCEEEEEE
Q 004207 630 DYSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGRILAAA 701 (768)
Q Consensus 630 ~~~~~-~~~~h~~~V~slafsp~g~~lLaSgs~D-----g~I~iWDl~sg~~i~~~~~--~~~i~sl~fsp~~~~llags 701 (768)
..... .+........++.+ +..+++.|+.+ ..+.+||+.+.+-...-.. .....+++.. ++..++.|+
T Consensus 148 ~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG 223 (308)
T 1zgk_A 148 EWHLVAPMLTRRIGVGVAVL---NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL-HNCIYAAGG 223 (308)
T ss_dssp EEEECCCCSSCCBSCEEEEE---TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECC
T ss_pred eEeECCCCCccccceEEEEE---CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE-CCEEEEEeC
Confidence 53211 11111111222222 34577777654 4688999987654332111 1111222222 344455555
Q ss_pred cC-----CeEEEEECCCce
Q 004207 702 IE-----NYISILDVETQV 715 (768)
Q Consensus 702 ~D-----g~I~IwD~~t~~ 715 (768)
.+ ..+.+||+.+..
T Consensus 224 ~~~~~~~~~v~~yd~~~~~ 242 (308)
T 1zgk_A 224 YDGQDQLNSVERYDVETET 242 (308)
T ss_dssp BCSSSBCCCEEEEETTTTE
T ss_pred CCCCCccceEEEEeCCCCc
Confidence 43 446777776653
No 329
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=95.25 E-value=2 Score=50.57 Aligned_cols=149 Identities=7% Similarity=0.031 Sum_probs=90.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEE
Q 004207 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 635 (768)
Q Consensus 556 ~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~ 635 (768)
..|.++....+| .|.+|+.+| +.+||..+.+...........|.++... ++ .|..++.+ .|..||..+... ..
T Consensus 63 ~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~~-~g-~lWigt~~-Gl~~~~~~~~~~--~~ 135 (758)
T 3ott_A 63 TRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMALQ-GD-TLWLGALN-GLYTYQLQSRKL--TS 135 (758)
T ss_dssp SCEEEEEEETTT-EEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEEE-TT-EEEEEETT-EEEEEETTTCCE--EE
T ss_pred ceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEec-CC-cEEEEcCC-cceeEeCCCCeE--EE
Confidence 468888877666 455566555 8899988765432111122357777543 44 56666666 588899876553 22
Q ss_pred ee-----cCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec------CCCeeEEEEecCCCEEEEEEcCC
Q 004207 636 FT-----GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC------QSGATQMRFQPRLGRILAAAIEN 704 (768)
Q Consensus 636 ~~-----~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~------~~~i~sl~fsp~~~~llags~Dg 704 (768)
+. -....|.++....++...+ ++. +-|..||..++........ ...|.++....+++.|.+++. +
T Consensus 136 ~~~~~~~l~~~~i~~i~~d~~g~lWi--gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~ 211 (758)
T 3ott_A 136 FDTRRNGLPNNTIYSIIRTKDNQIYV--GTY-NGLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-G 211 (758)
T ss_dssp ECHHHHCCSCSCEEEEEECTTCCEEE--EET-TEEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-E
T ss_pred eccCCCCcCCCeEEEEEEcCCCCEEE--EeC-CCHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-C
Confidence 21 1134688888887766333 443 3578889877654322111 123777877777776666664 5
Q ss_pred eEEEEECCCce
Q 004207 705 YISILDVETQV 715 (768)
Q Consensus 705 ~I~IwD~~t~~ 715 (768)
.|..||..+..
T Consensus 212 Gl~~~~~~~~~ 222 (758)
T 3ott_A 212 YLFQYFPSTGQ 222 (758)
T ss_dssp EEEEEETTTTE
T ss_pred CCeEEcCCCCe
Confidence 68888887654
No 330
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=95.23 E-value=0.68 Score=47.80 Aligned_cols=145 Identities=12% Similarity=0.081 Sum_probs=73.2
Q ss_pred CCCEEEEEeCC------CcEEEEECCCCeEEEE--eccCCCCEEEEEEcCCCCEEEEEeC---------CCcEEEEECCC
Q 004207 566 DGKLLATGGHD------KKAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSA---------DRTVRVWDTEN 628 (768)
Q Consensus 566 dg~~LaSgs~D------g~I~VWdl~t~~~~~t--l~~h~~~V~sl~fspdg~~LaTgs~---------DgtIrVWDl~t 628 (768)
++++++.|+.+ ..+.+||..+.+-... +........++.+ ++++++.|+. -..+.+||+.+
T Consensus 101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~ 178 (306)
T 3ii7_A 101 EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSGRVLNSCEVYDPAT 178 (306)
T ss_dssp TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEESCTTTCEECCCEEEEETTT
T ss_pred CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--CCEEEEECCCCCCCCcccccceEEEeCCCC
Confidence 67777777765 4588999887653322 1111112222333 4566666653 34588999987
Q ss_pred CCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCC-----CcEEEEECCCCeeEEEEecC--CCeeEEEEecCCCEEEEEE
Q 004207 629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSCAGVFKCQ--SGATQMRFQPRLGRILAAA 701 (768)
Q Consensus 629 ~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~D-----g~I~iWDl~sg~~i~~~~~~--~~i~sl~fsp~~~~llags 701 (768)
.......-......-.+++.. + ..+++.|+.+ ..|.+||+.+.+-...-... ..-..++.. ++..++.|+
T Consensus 179 ~~W~~~~~~p~~r~~~~~~~~-~-~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG 255 (306)
T 3ii7_A 179 ETWTELCPMIEARKNHGLVFV-K-DKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV-GSIVYVLAG 255 (306)
T ss_dssp TEEEEECCCSSCCBSCEEEEE-T-TEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE-TTEEEEEEC
T ss_pred CeEEECCCccchhhcceEEEE-C-CEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE-CCEEEEEeC
Confidence 653221111111111222222 3 4577776643 46889999876543321111 111122222 344555665
Q ss_pred cC-----CeEEEEECCCce
Q 004207 702 IE-----NYISILDVETQV 715 (768)
Q Consensus 702 ~D-----g~I~IwD~~t~~ 715 (768)
.+ +.|.+||+.+..
T Consensus 256 ~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 256 FQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp BCSSSBCCEEEEEETTTTE
T ss_pred cCCCeeeeeEEEEcCCCCe
Confidence 43 456677776654
No 331
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.17 E-value=1 Score=50.22 Aligned_cols=104 Identities=12% Similarity=0.114 Sum_probs=61.9
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCee-EEEeec------CCCCeEEEEEeCC---CCeEEEEEeC------
Q 004207 598 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS-LRTFTG------HSTTVMSLDFHPS---KEDLLCSCDN------ 661 (768)
Q Consensus 598 ~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~-~~~~~~------h~~~V~slafsp~---g~~lLaSgs~------ 661 (768)
...+.|+|.|+++++++-...+.|++++..++... +..+.. ....+..|+|+|+ +..++++-+.
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 45689999999987776544457888887555432 222211 2356779999996 5656655542
Q ss_pred ------CCcEEEEECCCC--e-----eEE-EEec--CCCeeEEEEecCCCEEEEEE
Q 004207 662 ------NSEIRYWSINNG--S-----CAG-VFKC--QSGATQMRFQPRLGRILAAA 701 (768)
Q Consensus 662 ------Dg~I~iWDl~sg--~-----~i~-~~~~--~~~i~sl~fsp~~~~llags 701 (768)
...|.-|++..+ . .+. .+.. .+....|+|.|++..+++.+
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 234555655322 1 111 1221 24478899999987655544
No 332
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=94.79 E-value=1.3 Score=46.83 Aligned_cols=51 Identities=12% Similarity=0.050 Sum_probs=28.0
Q ss_pred CCCEEEEEeC-C---------CcEEEEECCCCeEEEE--ec-cCCCCEEEEEEcCCCCEEEEEeCC
Q 004207 566 DGKLLATGGH-D---------KKAVLWCTESFTVKST--LE-EHTQWITDVRFSPSLSRLATSSAD 618 (768)
Q Consensus 566 dg~~LaSgs~-D---------g~I~VWdl~t~~~~~t--l~-~h~~~V~sl~fspdg~~LaTgs~D 618 (768)
++++++.|+. + ..+.+||..+.+-... +. .......++. .++++++.|+.+
T Consensus 65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~ 128 (357)
T 2uvk_A 65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV--HNGKAYVTGGVN 128 (357)
T ss_dssp TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEE--ETTEEEEEECCC
T ss_pred CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEE--ECCEEEEEeCcC
Confidence 5677777765 2 4688999887543221 11 1111222333 456777888765
No 333
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=94.74 E-value=2.5 Score=45.04 Aligned_cols=191 Identities=13% Similarity=0.058 Sum_probs=94.5
Q ss_pred CCCeEEEEEcCC---CCEEEEEeC-C-----CcEEEEECCCCe-----EE-EEec---cCCCCEEEEEEcCCCCEEEEEe
Q 004207 555 TSKVESCHFSPD---GKLLATGGH-D-----KKAVLWCTESFT-----VK-STLE---EHTQWITDVRFSPSLSRLATSS 616 (768)
Q Consensus 555 ~~~I~sl~fSpd---g~~LaSgs~-D-----g~I~VWdl~t~~-----~~-~tl~---~h~~~V~sl~fspdg~~LaTgs 616 (768)
......|+|+|+ +.+|+++.. + ..|..|+..... .+ ..+. ........|+|.|+|.++++.+
T Consensus 74 ~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 153 (352)
T 2ism_A 74 ESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG 153 (352)
T ss_dssp TCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred CCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence 346889999998 555554433 2 578888876431 12 1232 1112346899999997666643
Q ss_pred C-------------CCcEEEEECCCC------------CeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCc-------
Q 004207 617 A-------------DRTVRVWDTENP------------DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE------- 664 (768)
Q Consensus 617 ~-------------DgtIrVWDl~t~------------~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~------- 664 (768)
. .|.|.-++.+.. ........++ .....++|+|+...++++-.....
T Consensus 154 ~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~d 232 (352)
T 2ism_A 154 EVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHD 232 (352)
T ss_dssp CTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC------CCC
T ss_pred CCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCe
Confidence 2 145655665430 0101122233 236779999944445544332222
Q ss_pred -EEEEECCCCe------------------eEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEE
Q 004207 665 -IRYWSINNGS------------------CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLEL 725 (768)
Q Consensus 665 -I~iWDl~sg~------------------~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~i 725 (768)
|.+. ..+. .+..+..+.....++| .++..+++....+.|..+++..........
T Consensus 233 ei~~i--~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~---- 305 (352)
T 2ism_A 233 EVNLI--VPGGNYGWPRVVGRGNDPRYRDPLYFWPQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVL---- 305 (352)
T ss_dssp EEEEE--CTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEE----
T ss_pred EEEEe--ccCCcCCCCcccCCCCCCCCcCCeEecCCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeec----
Confidence 3332 2221 1222222234456666 333333333344556666554321100000
Q ss_pred eecCCCceEEeccCCCCeeEEEEeCCCCEEEEEE
Q 004207 726 WNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS 759 (768)
Q Consensus 726 wd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs 759 (768)
....+..-...+..|++.|||.++++..
T Consensus 306 ------~~~~~~~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 306 ------RVETALSGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp ------EEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred ------chheecccCCCeeEEEECCCCcEEEEEe
Confidence 0011112235689999999998776654
No 334
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=94.63 E-value=2.8 Score=43.35 Aligned_cols=111 Identities=9% Similarity=0.039 Sum_probs=56.2
Q ss_pred EEcCCCCEEEEEeC----CC-------cEEEEECCCCeEEEE--eccCCCCEEEEEEcCCCCEEEEEeCC-------CcE
Q 004207 562 HFSPDGKLLATGGH----DK-------KAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSAD-------RTV 621 (768)
Q Consensus 562 ~fSpdg~~LaSgs~----Dg-------~I~VWdl~t~~~~~t--l~~h~~~V~sl~fspdg~~LaTgs~D-------gtI 621 (768)
+...++.+++.|+. ++ .+.+||..+.+-... +.........+.+ ++.+++.|+.+ ..+
T Consensus 52 ~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~ 129 (318)
T 2woz_A 52 IVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSV 129 (318)
T ss_dssp EECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEE
T ss_pred EEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceE
Confidence 33457778888873 12 177888876543321 1111111222223 46677777754 258
Q ss_pred EEEECCCCCeeEEE-eecCCCCeEEEEEeCCCCeEEEEEeC------CCcEEEEECCCCeeEE
Q 004207 622 RVWDTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDN------NSEIRYWSINNGSCAG 677 (768)
Q Consensus 622 rVWDl~t~~~~~~~-~~~h~~~V~slafsp~g~~lLaSgs~------Dg~I~iWDl~sg~~i~ 677 (768)
.+||+.+.+..... +....... +++. .+ ..+++.|+. -..+.+||+.+.+-..
T Consensus 130 ~~yd~~~~~W~~~~~~p~~r~~~-~~~~-~~-~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~ 189 (318)
T 2woz_A 130 LCYDPVAAKWSEVKNLPIKVYGH-NVIS-HN-GMIYCLGGKTDDKKCTNRVFIYNPKKGDWKD 189 (318)
T ss_dssp EEEETTTTEEEEECCCSSCEESC-EEEE-ET-TEEEEECCEESSSCBCCCEEEEETTTTEEEE
T ss_pred EEEeCCCCCEeECCCCCCccccc-EEEE-EC-CEEEEEcCCCCCCCccceEEEEcCCCCEEEE
Confidence 88898876532111 11000111 1222 23 456666653 2458999998765443
No 335
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=94.32 E-value=15 Score=45.82 Aligned_cols=116 Identities=10% Similarity=0.110 Sum_probs=71.2
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEE--EEeccCCCCEEEEEEcCC------CCEEEEEeC-CCcEEEEEC
Q 004207 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK--STLEEHTQWITDVRFSPS------LSRLATSSA-DRTVRVWDT 626 (768)
Q Consensus 556 ~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~--~tl~~h~~~V~sl~fspd------g~~LaTgs~-DgtIrVWDl 626 (768)
..|.+.+.+ +..++.++ ++.|.++.++.++.. ... .-...|.|+++.+. +.++++|.+ |++|+|+++
T Consensus 514 ~~I~~As~n--~~~vvva~-g~~l~~fel~~~~L~~~~~~-~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL 589 (1158)
T 3ei3_A 514 KNISVASCN--SSQVVVAV-GRALYYLQIHPQELRQISHT-EMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKL 589 (1158)
T ss_dssp CCCCEEEEC--SSEEEEEE-TTEEEEEEEETTEEEEEEEE-ECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEET
T ss_pred CEEEEEEeC--CCEEEEEE-CCEEEEEEeeCCceeeeccc-CCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEEC
Confidence 457777664 34666665 678888877655432 222 23467999999763 468999997 999999999
Q ss_pred CCCCeeEEEeecCCCCeEEEEEeC-CCCeEEEEEeCCCcEEEEECC--CCee
Q 004207 627 ENPDYSLRTFTGHSTTVMSLDFHP-SKEDLLCSCDNNSEIRYWSIN--NGSC 675 (768)
Q Consensus 627 ~t~~~~~~~~~~h~~~V~slafsp-~g~~lLaSgs~Dg~I~iWDl~--sg~~ 675 (768)
.+.+.....-.+......++.+.. .+..+|..|-.||.+..+.+. +|..
T Consensus 590 ~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l 641 (1158)
T 3ei3_A 590 PSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLL 641 (1158)
T ss_dssp TTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCE
T ss_pred CCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCcc
Confidence 865532211111123445554432 233456678889988665543 4443
No 336
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=94.09 E-value=1.6 Score=54.93 Aligned_cols=196 Identities=12% Similarity=0.192 Sum_probs=119.0
Q ss_pred ccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcE
Q 004207 500 NQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKA 579 (768)
Q Consensus 500 ~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I 579 (768)
...++...+||.-+ ..++.+|+..... .++.+. ...+|.--.|-.+..+ +..+ +..|
T Consensus 71 AIMnP~~~iiALra-g~~lQiFnl~~k~-------------------klks~~-~~e~VvfWkWis~~~l-~lVT-~~aV 127 (1630)
T 1xi4_A 71 AIMNPASKVIALKA-GKTLQIFNIEMKS-------------------KMKAHT-MTDDVTFWKWISLNTV-ALVT-DNAV 127 (1630)
T ss_pred hccCCCcceEEEec-CCeEEEeehHHhh-------------------hhcccc-cCCCceEEEecCCCee-EEEc-CCeE
Confidence 33466667777654 5677777543221 111111 1235777777655443 3332 3579
Q ss_pred EEEECCC-CeEEEEeccC----CCCEEEEEEcCCCCEEEEEe-------CCCcEEEEECCCCCeeEEEeecCCCCeEEEE
Q 004207 580 VLWCTES-FTVKSTLEEH----TQWITDVRFSPSLSRLATSS-------ADRTVRVWDTENPDYSLRTFTGHSTTVMSLD 647 (768)
Q Consensus 580 ~VWdl~t-~~~~~tl~~h----~~~V~sl~fspdg~~LaTgs-------~DgtIrVWDl~t~~~~~~~~~~h~~~V~sla 647 (768)
+-|++.. ..++..+..| ...|..-+.+++.++++..+ -.|.+.+|.++.+. ...+.||.+....+.
T Consensus 128 yHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~--sQ~iegha~~F~~~~ 205 (1630)
T 1xi4_A 128 YHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV--SQPIEGHAASFAQFK 205 (1630)
T ss_pred EEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc--chhhhHhHhhhheec
Confidence 9999964 2344444433 34577777788888776543 35788999987643 466777776655554
Q ss_pred Ee--CCCCeEEEEEeC---CCcEEEEECCCC---eeE------EEEec----CCCeeEEEEecCCCEEEEEEcCCeEEEE
Q 004207 648 FH--PSKEDLLCSCDN---NSEIRYWSINNG---SCA------GVFKC----QSGATQMRFQPRLGRILAAAIENYISIL 709 (768)
Q Consensus 648 fs--p~g~~lLaSgs~---Dg~I~iWDl~sg---~~i------~~~~~----~~~i~sl~fsp~~~~llags~Dg~I~Iw 709 (768)
.. +....+||.+.. .+.++|.++... ... ..+.. ..-..++..++..+.++..+.-|.|++|
T Consensus 206 ~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~ 285 (1630)
T 1xi4_A 206 MEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLY 285 (1630)
T ss_pred cCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEE
Confidence 43 222345554433 368999988542 111 11111 2234578888888999999999999999
Q ss_pred ECCCceEeeec
Q 004207 710 DVETQVCRLKL 720 (768)
Q Consensus 710 D~~t~~~~~~~ 720 (768)
|+.|+.++..-
T Consensus 286 d~~t~~~i~~~ 296 (1630)
T 1xi4_A 286 DLETGTCIYMN 296 (1630)
T ss_pred ecccchhhhhc
Confidence 99999876543
No 337
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=94.01 E-value=0.93 Score=46.97 Aligned_cols=106 Identities=8% Similarity=0.119 Sum_probs=57.6
Q ss_pred CCCEEEEEeCC-----CcEEEEECCCCeEEEE--eccCCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCCeeE
Q 004207 566 DGKLLATGGHD-----KKAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSAD-----RTVRVWDTENPDYSL 633 (768)
Q Consensus 566 dg~~LaSgs~D-----g~I~VWdl~t~~~~~t--l~~h~~~V~sl~fspdg~~LaTgs~D-----gtIrVWDl~t~~~~~ 633 (768)
++++++.|+.+ ..+.+||..+.+-... +........++.+ ++.+++.|+.+ ..+.+||+.+.....
T Consensus 121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~ 198 (308)
T 1zgk_A 121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRM 198 (308)
T ss_dssp TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEE
T ss_pred CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEee
Confidence 67777776643 3588899887543321 1111122223333 56677777654 468999988765321
Q ss_pred E-EeecCCCCeEEEEEeCCCCeEEEEEeCC-----CcEEEEECCCCeeE
Q 004207 634 R-TFTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSCA 676 (768)
Q Consensus 634 ~-~~~~h~~~V~slafsp~g~~lLaSgs~D-----g~I~iWDl~sg~~i 676 (768)
. ..........++.+ ++.+++.|+.+ ..|.+||+.+.+-.
T Consensus 199 ~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~ 244 (308)
T 1zgk_A 199 ITAMNTIRSGAGVCVL---HNCIYAAGGYDGQDQLNSVERYDVETETWT 244 (308)
T ss_dssp CCCCSSCCBSCEEEEE---TTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred CCCCCCccccceEEEE---CCEEEEEeCCCCCCccceEEEEeCCCCcEE
Confidence 1 11111111222222 34577777654 56899999876543
No 338
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=93.78 E-value=3.4 Score=43.17 Aligned_cols=135 Identities=4% Similarity=-0.044 Sum_probs=76.9
Q ss_pred CCCCEEEEEe--CCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCC--------------CcEEEEECCC
Q 004207 565 PDGKLLATGG--HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD--------------RTVRVWDTEN 628 (768)
Q Consensus 565 pdg~~LaSgs--~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~D--------------gtIrVWDl~t 628 (768)
.++.+|+... .++.|...+.+..... .+.. . .+-.|++++.+|+.+... ..|+..+++.
T Consensus 23 ~~g~~iy~~n~~d~~~ly~~~~dg~~~~-~l~~--~--~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg 97 (302)
T 3s25_A 23 ESDGEVFFSNTNDNGRLYAMNIDGSNIH-KLSN--D--TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNG 97 (302)
T ss_dssp EETTEEEEEEGGGTTEEEEEETTSCSCE-EEEE--E--EEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTS
T ss_pred EeCCEEEEEeCCCCceEEEEcCCCCCCE-EccC--C--ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCC
Confidence 4677666554 2556666666544333 3322 1 234457788888777543 3677777776
Q ss_pred CCeeEEEeecCCCCeEEEEEeCCCCeEEEEE---eCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEc-CC
Q 004207 629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC---DNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-EN 704 (768)
Q Consensus 629 ~~~~~~~~~~h~~~V~slafsp~g~~lLaSg---s~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~-Dg 704 (768)
... ..+.. .. +..|+++++.++.+- ..+..|...++........... .+ ..|+++++.|+..+. ..
T Consensus 98 ~~~--~~l~~--~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~--~~--~~~~~~g~~iy~t~~g~~ 167 (302)
T 3s25_A 98 HGS--TVLDP--DP--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNH--YL--FTCNTSDRYFYYNNPKNG 167 (302)
T ss_dssp CCC--EEEEC--SC--EEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESS--CC--CCSEEETTEEEEECTTTC
T ss_pred Ccc--eEeec--CC--ccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCC--Cc--eEeeEECCEEEEEeCCCc
Confidence 553 22221 11 236777888777665 3455677777764433333332 22 345777778777665 56
Q ss_pred eEEEEECCCc
Q 004207 705 YISILDVETQ 714 (768)
Q Consensus 705 ~I~IwD~~t~ 714 (768)
.|.+.++...
T Consensus 168 ~Iy~~~l~g~ 177 (302)
T 3s25_A 168 QLYRYDTASQ 177 (302)
T ss_dssp CEEEEETTTT
T ss_pred eEEEEECCCC
Confidence 6777776654
No 339
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=93.77 E-value=0.56 Score=50.27 Aligned_cols=103 Identities=13% Similarity=0.206 Sum_probs=59.9
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCee--EE----EeecCCCCeEEEEEeCC---CCeEEEEEeC-------C
Q 004207 599 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYS--LR----TFTGHSTTVMSLDFHPS---KEDLLCSCDN-------N 662 (768)
Q Consensus 599 ~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~--~~----~~~~h~~~V~slafsp~---g~~lLaSgs~-------D 662 (768)
....|+|.|++++|+++...|.|++++.+. ... +. .+.........|+|+|+ +..++++-.. .
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g-~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAGK-GLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETTT-EECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCCC-ceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 468999999998445556789999998542 210 11 11122345789999996 5556655433 2
Q ss_pred CcEEEEECCCC--e--eEEE-Eec-------CCCeeEEEEecCCCEEEEEEcC
Q 004207 663 SEIRYWSINNG--S--CAGV-FKC-------QSGATQMRFQPRLGRILAAAIE 703 (768)
Q Consensus 663 g~I~iWDl~sg--~--~i~~-~~~-------~~~i~sl~fsp~~~~llags~D 703 (768)
..|..|++... . .... +.. .+....++|.|++ +|+++..|
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~Gd 149 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKG-YLFIALGE 149 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSS-EEEEEECC
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCC-cEEEEECC
Confidence 35666766533 1 1111 111 1224579999997 55555433
No 340
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=93.63 E-value=0.12 Score=52.03 Aligned_cols=104 Identities=15% Similarity=0.111 Sum_probs=62.9
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE------EEEec--cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004207 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTV------KSTLE--EHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 628 (768)
Q Consensus 557 ~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~------~~tl~--~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t 628 (768)
.+.+++|+|+|.+.++ .+|.++-.+..+... ...+- +-.. ..++.|.|++.+.++ .||.|+-++..+
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP~ 116 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPPQ 116 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence 5779999999997777 667766666544111 11110 1111 478899999987777 569888777533
Q ss_pred CCee------EEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEE
Q 004207 629 PDYS------LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW 668 (768)
Q Consensus 629 ~~~~------~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iW 668 (768)
.... ...-.+.=..+.+|.|.|+|. |.++. |+.++-+
T Consensus 117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~-Lyav~--dg~lyr~ 159 (236)
T 1tl2_A 117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGY-LYAVH--GQQFYKA 159 (236)
T ss_dssp STTCCHHHHSEEEECSSGGGEEEEEECTTSC-EEEEE--TTEEEEE
T ss_pred CCCCceeccccEeccCCCCceEEEEECCCce-EEEEe--CCcEEec
Confidence 2210 111111224689999999986 44343 7775433
No 341
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=93.20 E-value=0.027 Score=62.58 Aligned_cols=13 Identities=23% Similarity=0.355 Sum_probs=6.0
Q ss_pred hHHHHHHhhhhcc
Q 004207 56 WSVFWDIFIARTN 68 (768)
Q Consensus 56 w~~FWdlf~A~~~ 68 (768)
|..+|+++...-.
T Consensus 336 ~~~~~~~~~~~~~ 348 (449)
T 3iot_A 336 MSAFWYAVRTAVI 348 (449)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4445555544333
No 342
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=93.00 E-value=3.3 Score=48.61 Aligned_cols=108 Identities=11% Similarity=0.126 Sum_probs=61.8
Q ss_pred CCCEEEEEeCCC------cEEEEECCCCeEEE--EeccCCCCEEEEEEcCCCCEEEEEeCCC--cEEEEECCCCCeeEEE
Q 004207 566 DGKLLATGGHDK------KAVLWCTESFTVKS--TLEEHTQWITDVRFSPSLSRLATSSADR--TVRVWDTENPDYSLRT 635 (768)
Q Consensus 566 dg~~LaSgs~Dg------~I~VWdl~t~~~~~--tl~~h~~~V~sl~fspdg~~LaTgs~Dg--tIrVWDl~t~~~~~~~ 635 (768)
++++++.||.++ .+.+||..+.+-.. .+......- +++...++.+++.|+.++ .+.+||+.+.......
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h-~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~ 529 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRH-SACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVT 529 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSC-EEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECC
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccc-eEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEcc
Confidence 677777776543 57889988743221 121111122 222323678888887655 6899999876542221
Q ss_pred e----ecCCCCeEEEEEeCCCCeEEEEEeC--C-----CcEEEEECCCCe
Q 004207 636 F----TGHSTTVMSLDFHPSKEDLLCSCDN--N-----SEIRYWSINNGS 674 (768)
Q Consensus 636 ~----~~h~~~V~slafsp~g~~lLaSgs~--D-----g~I~iWDl~sg~ 674 (768)
. ........++.+......+++.|+. + ..|.+||+.+..
T Consensus 530 ~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 530 PKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp CSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred CCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence 1 1111222335556554557777765 2 458899998776
No 343
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=92.71 E-value=1.4 Score=45.73 Aligned_cols=107 Identities=10% Similarity=0.081 Sum_probs=56.3
Q ss_pred CCCEEEEEeCC--------CcEEEEECCCCeEEE--EeccCCCCEEEEEEcCCCCEEEEEeC-C-----CcEEEEECCCC
Q 004207 566 DGKLLATGGHD--------KKAVLWCTESFTVKS--TLEEHTQWITDVRFSPSLSRLATSSA-D-----RTVRVWDTENP 629 (768)
Q Consensus 566 dg~~LaSgs~D--------g~I~VWdl~t~~~~~--tl~~h~~~V~sl~fspdg~~LaTgs~-D-----gtIrVWDl~t~ 629 (768)
++++++.|+.+ ..+.+||..+.+-.. .+........++. -++++++.|+. + ..+.+||+.+.
T Consensus 98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~ 175 (315)
T 4asc_A 98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS--HMDLVYVIGGKGSDRKCLNKMCVYDPKKF 175 (315)
T ss_dssp TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCTTSCBCCCEEEEETTTT
T ss_pred CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE--ECCEEEEEeCCCCCCcccceEEEEeCCCC
Confidence 56667777632 358899988764322 1111111222222 24566777765 2 36899999876
Q ss_pred CeeEE-EeecCCCCeEEEEEeCCCCeEEEEEeCCC-----cEEEEECCCCeeEE
Q 004207 630 DYSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNNS-----EIRYWSINNGSCAG 677 (768)
Q Consensus 630 ~~~~~-~~~~h~~~V~slafsp~g~~lLaSgs~Dg-----~I~iWDl~sg~~i~ 677 (768)
..... ..........++.+ + +.+++.|+.++ .+.+||+.+.+-..
T Consensus 176 ~W~~~~~~p~~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~ 226 (315)
T 4asc_A 176 EWKELAPMQTARSLFGATVH--D-GRIIVAAGVTDTGLTSSAEVYSITDNKWAP 226 (315)
T ss_dssp EEEECCCCSSCCBSCEEEEE--T-TEEEEEEEECSSSEEEEEEEEETTTTEEEE
T ss_pred eEEECCCCCCchhceEEEEE--C-CEEEEEeccCCCCccceEEEEECCCCeEEE
Confidence 53211 11111111122222 3 45777776544 58889998765443
No 344
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=92.21 E-value=0.9 Score=45.65 Aligned_cols=140 Identities=11% Similarity=-0.081 Sum_probs=75.6
Q ss_pred CCCEEEEEeCCCcEEEEECCCCC---e--eEEEeec-CCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCee------
Q 004207 608 SLSRLATSSADRTVRVWDTENPD---Y--SLRTFTG-HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC------ 675 (768)
Q Consensus 608 dg~~LaTgs~DgtIrVWDl~t~~---~--~~~~~~~-h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~------ 675 (768)
...+|++...| +|++=...... . ....+.. .=..+.+++|+|++. |.++ .+|.+.-.+..+...
T Consensus 3 ~~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~-LYaV--~~G~Ly~~~~~t~~~~~W~~s 78 (236)
T 1tl2_A 3 GESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGE-LYGV--LNDKIYKGTPPTHDNDNWMGR 78 (236)
T ss_dssp CCCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSC-EEEE--ETTEEEEESCCCSTTCCHHHH
T ss_pred cceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCcc-EEEE--eCCeEEEECCCCCCccccccc
Confidence 34567777777 55554433322 1 1122211 124688999999876 5555 578877777654211
Q ss_pred EEEEe--cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCC
Q 004207 676 AGVFK--CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNG 753 (768)
Q Consensus 676 i~~~~--~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~ 753 (768)
-..+- .-.....+.|.|++...++ .|+.|+-++..+..... |-.. ... .-..-=..+..|.|.|+|.
T Consensus 79 ~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~-------Wl~~-a~~-vg~~gw~~~~~lff~p~G~ 147 (236)
T 1tl2_A 79 AKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDN-------WIAR-ATE-VGSGGWSGFKFLFFHPNGY 147 (236)
T ss_dssp CEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCC-------HHHH-SEE-EECSSGGGEEEEEECTTSC
T ss_pred ccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCc-------eecc-ccE-eccCCCCceEEEEECCCce
Confidence 11111 1122578899998765555 67988877754321110 1000 000 0011113578999999998
Q ss_pred EEEEEECCCcE
Q 004207 754 MVASASHDKCV 764 (768)
Q Consensus 754 ~LaSgs~DG~V 764 (768)
+.++. |+.+
T Consensus 148 Lyav~--dg~l 156 (236)
T 1tl2_A 148 LYAVH--GQQF 156 (236)
T ss_dssp EEEEE--TTEE
T ss_pred EEEEe--CCcE
Confidence 77666 6765
No 345
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=91.68 E-value=2.2 Score=44.26 Aligned_cols=107 Identities=7% Similarity=0.120 Sum_probs=54.6
Q ss_pred CCCEEEEEeCC-------CcEEEEECCCCeEEEE--eccCCCCEEEEEEcCCCCEEEEEeC------CCcEEEEECCCCC
Q 004207 566 DGKLLATGGHD-------KKAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSA------DRTVRVWDTENPD 630 (768)
Q Consensus 566 dg~~LaSgs~D-------g~I~VWdl~t~~~~~t--l~~h~~~V~sl~fspdg~~LaTgs~------DgtIrVWDl~t~~ 630 (768)
++++++.|+.+ ..+.+||..+.+-... +........++. .++.+++.|+. -..+.+||+.+..
T Consensus 109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~ 186 (318)
T 2woz_A 109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS--HNGMIYCLGGKTDDKKCTNRVFIYNPKKGD 186 (318)
T ss_dssp TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE--ETTEEEEECCEESSSCBCCCEEEEETTTTE
T ss_pred CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE--ECCEEEEEcCCCCCCCccceEEEEcCCCCE
Confidence 67777777754 2478888877553322 111111112222 35566666654 2358999998765
Q ss_pred eeEEEeecCCCCeEEEEEeCCCCeEEEEEeCC-----CcEEEEECCCCeeE
Q 004207 631 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSCA 676 (768)
Q Consensus 631 ~~~~~~~~h~~~V~slafsp~g~~lLaSgs~D-----g~I~iWDl~sg~~i 676 (768)
............-.+++.. + +.+++.|+.+ ..+.+||+.+.+-.
T Consensus 187 W~~~~~~p~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 235 (318)
T 2woz_A 187 WKDLAPMKTPRSMFGVAIH-K-GKIVIAGGVTEDGLSASVEAFDLKTNKWE 235 (318)
T ss_dssp EEEECCCSSCCBSCEEEEE-T-TEEEEEEEEETTEEEEEEEEEETTTCCEE
T ss_pred EEECCCCCCCcccceEEEE-C-CEEEEEcCcCCCCccceEEEEECCCCeEE
Confidence 3221111111111222222 2 4566676543 35778998876543
No 346
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=91.65 E-value=2.7 Score=44.17 Aligned_cols=49 Identities=8% Similarity=-0.189 Sum_probs=25.0
Q ss_pred CcEEEEECCCCeEE--EEeccCCCCEEEEEEcCCCCEEEEEeC------CCcEEEEEC
Q 004207 577 KKAVLWCTESFTVK--STLEEHTQWITDVRFSPSLSRLATSSA------DRTVRVWDT 626 (768)
Q Consensus 577 g~I~VWdl~t~~~~--~tl~~h~~~V~sl~fspdg~~LaTgs~------DgtIrVWDl 626 (768)
..+.+||..+.+-. ..+......-.+++.. ++.+++.|+. ...+.+||+
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~ 224 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDF 224 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEEC
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEe
Confidence 46889998875432 2222111110122222 4556666654 345777887
No 347
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=91.15 E-value=7.1 Score=45.72 Aligned_cols=150 Identities=11% Similarity=0.099 Sum_probs=77.3
Q ss_pred CCCCEEEEEeCC----CcEEEEECCCCeEEEEe--------ccCCCCEEEEEEcCCCCEEEEEeCCC------cEEEEEC
Q 004207 565 PDGKLLATGGHD----KKAVLWCTESFTVKSTL--------EEHTQWITDVRFSPSLSRLATSSADR------TVRVWDT 626 (768)
Q Consensus 565 pdg~~LaSgs~D----g~I~VWdl~t~~~~~tl--------~~h~~~V~sl~fspdg~~LaTgs~Dg------tIrVWDl 626 (768)
.++.+++.||.+ ..+.+||..+.+-...- ......-.++.+..++.+++.|+.++ .+.+||+
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 466677777653 45888998776533222 11112223344432667777777543 5889998
Q ss_pred CCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCC--cEEEEECCCCeeEEEEe---c---CCCeeEEEEecC-CCEE
Q 004207 627 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFK---C---QSGATQMRFQPR-LGRI 697 (768)
Q Consensus 627 ~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg--~I~iWDl~sg~~i~~~~---~---~~~i~sl~fsp~-~~~l 697 (768)
.+.......-......-.+++...+ ..+++.|+.++ .+.+||..+..-...-. . ......+.+... +..+
T Consensus 476 ~t~~W~~~~~~p~~R~~h~~~~~~~-~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iy 554 (695)
T 2zwa_A 476 KTREWSMIKSLSHTRFRHSACSLPD-GNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGI 554 (695)
T ss_dssp TTTEEEECCCCSBCCBSCEEEECTT-SCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEE
T ss_pred CCCcEEECCCCCCCcccceEEEEcC-CEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEE
Confidence 8754321110011111122233234 44666776544 69999998865433221 1 111233555655 3445
Q ss_pred EEEEc--C-----CeEEEEECCCce
Q 004207 698 LAAAI--E-----NYISILDVETQV 715 (768)
Q Consensus 698 lags~--D-----g~I~IwD~~t~~ 715 (768)
+.|+. + +.+.+||+.+..
T Consensus 555 v~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 555 ILGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp EECCBCTTSSCBCCEEEEEEECTTC
T ss_pred EECCcCCCCCeeeCcEEEEEccCCc
Confidence 55554 2 346677776654
No 348
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=90.32 E-value=3 Score=52.50 Aligned_cols=196 Identities=12% Similarity=0.200 Sum_probs=108.3
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecC-
Q 004207 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH- 639 (768)
Q Consensus 561 l~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h- 639 (768)
.-.+|..+.||.-. ..++.|||+++...+..+.-. ..|.--.|-.+. .|+-. .+..|+.|++.....+...+..|
T Consensus 71 AIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~-e~VvfWkWis~~-~l~lV-T~~aVyHW~~~~~s~P~k~fdR~~ 146 (1630)
T 1xi4_A 71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLN-TVALV-TDNAVYHWSMEGESQPVKMFDRHS 146 (1630)
T ss_pred hccCCCcceEEEec-CCeEEEeehHHhhhhcccccC-CCceEEEecCCC-eeEEE-cCCeEEEeccCCCCccHHHHhcch
Confidence 34566667666554 578999999987777666543 456666775443 34333 35679999997655555555555
Q ss_pred ---CCCeEEEEEeCCCCeEEEEEe------CCCcEEEEECCCCeeEEEEecCCC-eeEEEE--ecCCCEEEEEEc----C
Q 004207 640 ---STTVMSLDFHPSKEDLLCSCD------NNSEIRYWSINNGSCAGVFKCQSG-ATQMRF--QPRLGRILAAAI----E 703 (768)
Q Consensus 640 ---~~~V~slafsp~g~~lLaSgs------~Dg~I~iWDl~sg~~i~~~~~~~~-i~sl~f--sp~~~~llags~----D 703 (768)
...|..-..+++.++++++|- -.|.+.+|.++.+.. ..+.++.. ...+.. .+....+++-.. .
T Consensus 147 ~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~s-Q~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g 225 (1630)
T 1xi4_A 147 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAG 225 (1630)
T ss_pred hcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccc-hhhhHhHhhhheeccCCCCCCceEEEEEEecCCC
Confidence 456777888899888887764 357888888874321 12221111 111111 111112222221 2
Q ss_pred CeEEEEECCCc-eEeeec--ceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 704 NYISILDVETQ-VCRLKL--QTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 704 g~I~IwD~~t~-~~~~~~--~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
+.++|.++... .....+ +.+.++-.. ..-.+-..++..++.-+++...+.-|.|++||
T Consensus 226 ~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~-------~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d 286 (1630)
T 1xi4_A 226 GKLHIIEVGTPPTGNQPFPKKAVDVFFPP-------EAQNDFPVAMQISEKHDVVFLITKYGYIHLYD 286 (1630)
T ss_pred ceEEEEecCCCccCCCCCccccccccCCc-------ccccCcceEEEeccccCEEEEEecCceEEEEe
Confidence 67888887543 111111 111111000 01223345666677667777777777777765
No 349
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=90.12 E-value=20 Score=37.44 Aligned_cols=191 Identities=8% Similarity=0.029 Sum_probs=106.1
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCeEE---------EEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC---CCe-
Q 004207 565 PDGKLLATGGHDKKAVLWCTESFTVK---------STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN---PDY- 631 (768)
Q Consensus 565 pdg~~LaSgs~Dg~I~VWdl~t~~~~---------~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t---~~~- 631 (768)
++..++++.+.+|.|+--.+...+.. ..++.. +.+..+........++..+..|.++-+.... ...
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~-D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~ 84 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDG-DEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRA 84 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTT-CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC----
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCC-CEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCcc
Confidence 45667888999999998866543211 122322 3455555555556777888899877666532 100
Q ss_pred ----e---EEEeecCCCCeEEEEEeC---CCCeEEEEEeCCCcEEEEECCC-------CeeEEEEecCCCeeEEEEecCC
Q 004207 632 ----S---LRTFTGHSTTVMSLDFHP---SKEDLLCSCDNNSEIRYWSINN-------GSCAGVFKCQSGATQMRFQPRL 694 (768)
Q Consensus 632 ----~---~~~~~~h~~~V~slafsp---~g~~lLaSgs~Dg~I~iWDl~s-------g~~i~~~~~~~~i~sl~fsp~~ 694 (768)
. ...+. ....|.++...+ +.. .++..+..|.++...+.. |.....+.....+..+......
T Consensus 85 ~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~-~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~~d~lv~~~~~~~~ 162 (312)
T 1suu_A 85 SKGQNISELINLG-DQEEILTIKNSKDLTDDA-YLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVFKD 162 (312)
T ss_dssp ---CBGGGTSCCC-TTCCEEEEEEESCCCTTC-EEEEEETTSEEEEEEGGGGCC----CEECBCCCTTCCEEEEEEECTT
T ss_pred CCCcChhhccCCC-CCCEEEEEEEeccCCCCC-EEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCCCCEEEEEEEeCCC
Confidence 0 00122 223455554332 233 344667799999887743 2222223334556666655556
Q ss_pred CEEEEEEcCCeEEEEECCCceEeee-cceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 004207 695 GRILAAAIENYISILDVETQVCRLK-LQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 767 (768)
Q Consensus 695 ~~llags~Dg~I~IwD~~t~~~~~~-~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IW 767 (768)
..++..+.+|.+..|....-....+ -..+.+.. +.. .+.|.++..-.++..|++.+..|.++..
T Consensus 163 ~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~--------L~~-~d~vv~~~~v~~~~~l~~vt~~G~~kr~ 227 (312)
T 1suu_A 163 EKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMK--------LKE-GDLFVKVLSVKENPYLLIVSENGYGKRL 227 (312)
T ss_dssp CEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCC--------CCT-TCCEEEEEECTTCSEEEEEETTSEEEEE
T ss_pred CEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEE--------eCC-CCEEEEEEEECCCCeEEEEECCCceEEE
Confidence 7899999999998888765322211 11122222 222 3345555554556678888888887654
No 350
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=89.94 E-value=19 Score=36.93 Aligned_cols=157 Identities=11% Similarity=0.023 Sum_probs=89.5
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEE---ECCCCeEEEEeccCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCC--
Q 004207 556 SKVESCHFSPDGKLLATGGHDKKAVLW---CTESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENP-- 629 (768)
Q Consensus 556 ~~I~sl~fSpdg~~LaSgs~Dg~I~VW---dl~t~~~~~tl~~h~~~V~sl~fsp-dg~~LaTgs~DgtIrVWDl~t~-- 629 (768)
+.|.++.......+|+..+.+|.++-- ++...+-...+. ....|..+.... +..+++.++.+|.|+...+..-
T Consensus 24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~-~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~ 102 (276)
T 3no0_A 24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSLKS-REEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEY 102 (276)
T ss_dssp CCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECCCSS-TTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTT
T ss_pred CeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccccCC-CCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhh
Confidence 345555444455566666677776643 333221111133 345566664421 4678999999999999987542
Q ss_pred ---CeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCC---------CeeEEEEecCCCeeEEEEecCCCEE
Q 004207 630 ---DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN---------GSCAGVFKCQSGATQMRFQPRLGRI 697 (768)
Q Consensus 630 ---~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~s---------g~~i~~~~~~~~i~sl~fsp~~~~l 697 (768)
......+.. ...+..+........++ ..+.+|.+..+++.. |...-.+.....|..+....++.++
T Consensus 103 ~~~G~~~i~lke-gD~l~~~~~~~~~~~il-l~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~~d~vv~~~~~~~~~~l 180 (276)
T 3no0_A 103 KAQGMPIIKLTE-GDEVVSIASSVDETHIL-LFTKKGRVARFSVREVPPSTPGARGVQGIKLEKNDETSGLRIWNGEPYL 180 (276)
T ss_dssp CSTTEECSCCCT-TCCEEEEEECCSSCEEE-EEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEESSCSEE
T ss_pred hcCCeEEEecCC-CCEEEEEEEeCCCCEEE-EEECCCEEEEEEhhhCCCcCCCCCCEEEEccCCCCEEEEEEEeCCCCEE
Confidence 111112222 34555555554444444 556688887776532 1121123334556666666666789
Q ss_pred EEEEcCCeEEEEECCCce
Q 004207 698 LAAAIENYISILDVETQV 715 (768)
Q Consensus 698 lags~Dg~I~IwD~~t~~ 715 (768)
+..+..|.++...+....
T Consensus 181 l~~T~~G~~kr~~~~e~~ 198 (276)
T 3no0_A 181 LVITAKGRVKKISHEEIP 198 (276)
T ss_dssp EEEETTSCEEEEEGGGSC
T ss_pred EEEeCCCcEEEeEHHHcc
Confidence 999999998888776543
No 351
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=89.65 E-value=2 Score=48.85 Aligned_cols=122 Identities=6% Similarity=-0.012 Sum_probs=77.6
Q ss_pred cEEEEECCC----C-eEEEEeccCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEECCCC-----------CeeEEEeecCC
Q 004207 578 KAVLWCTES----F-TVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENP-----------DYSLRTFTGHS 640 (768)
Q Consensus 578 ~I~VWdl~t----~-~~~~tl~~h~~~V~sl~fspdg~~LaTgs~-DgtIrVWDl~t~-----------~~~~~~~~~h~ 640 (768)
.|.|.|... + ..+..+.. ......+.++|||+++++++. +.+|.|+|++.- +..+.....-.
T Consensus 299 gv~ViD~~~~~~~~~~~~~~iP~-pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~G 377 (638)
T 3sbq_A 299 KTPVLDGRKKDGKDSKFTRYVPV-PKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELG 377 (638)
T ss_dssp CCCEEECSCBTTBCCSSEEEEEE-SSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCC
T ss_pred CeeEEccccccccCCceEEEEeC-CCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCC
Confidence 366777654 2 23333332 234567889999999887765 679999998731 11112112233
Q ss_pred CCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCC----------eeEEEEecCCCeeEEEE------ecCCCEEEEEE
Q 004207 641 TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG----------SCAGVFKCQSGATQMRF------QPRLGRILAAA 701 (768)
Q Consensus 641 ~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg----------~~i~~~~~~~~i~sl~f------sp~~~~llags 701 (768)
......+|.++| +.+.|.--|..|..|++... ..+..+..+..+-.+.- .++|.+|++..
T Consensus 378 lGPlHt~Fd~~G-~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~ln 453 (638)
T 3sbq_A 378 LGPLHTTFDGRG-NAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALS 453 (638)
T ss_dssp SCEEEEEECSSS-EEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEE
T ss_pred CcccEEEECCCC-ceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEec
Confidence 457789999998 57778888999999998642 34555555554444433 46677777765
No 352
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=88.65 E-value=28 Score=37.18 Aligned_cols=152 Identities=10% Similarity=0.114 Sum_probs=82.0
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCC-----------CeEEEEecc-CCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 004207 557 KVESCHFSPDGKLLATGGHDKKAVLWCTES-----------FTVKSTLEE-HTQWITDVRFSPSLSRLATSSADRTVRVW 624 (768)
Q Consensus 557 ~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t-----------~~~~~tl~~-h~~~V~sl~fspdg~~LaTgs~DgtIrVW 624 (768)
.|..++++....+.+.-..||.|+.|-... ......+.. ....|..|+-- ..+.+....||.|+.|
T Consensus 106 ~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G--~~hs~alt~~G~v~~w 183 (389)
T 3kci_A 106 FIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG--GAHSACVTAAGDLYTW 183 (389)
T ss_dssp CEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC--SSEEEEEETTSCEEEE
T ss_pred ceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeC--cCeEEEEeCCCeEEEe
Confidence 455566766666766777899999995432 011122222 12256666654 3456666789999999
Q ss_pred ECCCC---------Ce-eEEEeec-CCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCC---------e--eEEEEec-
Q 004207 625 DTENP---------DY-SLRTFTG-HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG---------S--CAGVFKC- 681 (768)
Q Consensus 625 Dl~t~---------~~-~~~~~~~-h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg---------~--~i~~~~~- 681 (768)
-.... .. ....+.. ....|..++.-....+.+ .-..||.|+.|-.... . ....+..
T Consensus 184 G~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~-~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~ 262 (389)
T 3kci_A 184 GKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTL-CLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL 262 (389)
T ss_dssp ECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEE-EEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGG
T ss_pred CCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEE-EEccCCEEEEEeCCCCCCCCCCCCCCccccEEeccc
Confidence 75421 01 0111111 223566666543223333 4556899999964321 0 1111111
Q ss_pred -CCCeeEEEEecCCCEEEEEEcCCeEEEEECCC
Q 004207 682 -QSGATQMRFQPRLGRILAAAIENYISILDVET 713 (768)
Q Consensus 682 -~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t 713 (768)
...|..++.-. .+.++...++.|+.|=...
T Consensus 263 ~~~~v~~v~~G~--~hs~alt~~G~v~~wG~n~ 293 (389)
T 3kci_A 263 TGLGVVKVECGS--QFSVALTKSGAVYTWGKGD 293 (389)
T ss_dssp TTSCEEEEEEET--TEEEEEETTSCEEEEECCG
T ss_pred CCCcEEEEeCCC--CEEEEEeCCCeEEEEeCCC
Confidence 12355555544 3566677889999886543
No 353
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=88.54 E-value=8.9 Score=43.57 Aligned_cols=74 Identities=11% Similarity=0.116 Sum_probs=55.4
Q ss_pred CCeEEEEEeCCCCeEEEEEeCCCcEEEEECCC------Ce-------eEEEEecCCCeeEEEEecCCCEEEEEEcCCeEE
Q 004207 641 TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN------GS-------CAGVFKCQSGATQMRFQPRLGRILAAAIENYIS 707 (768)
Q Consensus 641 ~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~s------g~-------~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~ 707 (768)
.....+.++|+|++++++|-.+.+|.++|++. ++ .+......-+....+|.++|.-+.+.--|..|.
T Consensus 323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqvv 402 (638)
T 3sbq_A 323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQVV 402 (638)
T ss_dssp SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEE
T ss_pred CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecceEE
Confidence 44567889999999999999999999999873 11 133444456678899999984333444799999
Q ss_pred EEECCCc
Q 004207 708 ILDVETQ 714 (768)
Q Consensus 708 IwD~~t~ 714 (768)
.|++...
T Consensus 403 kWni~~a 409 (638)
T 3sbq_A 403 KWNMEEA 409 (638)
T ss_dssp EEEHHHH
T ss_pred EEeccHH
Confidence 9998653
No 354
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=87.42 E-value=0.59 Score=39.58 Aligned_cols=31 Identities=23% Similarity=0.353 Sum_probs=28.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhcCCCCC
Q 004207 11 MLDVYIYDYLLKRKLHASAKAFQTEGKVSTD 41 (768)
Q Consensus 11 ~L~~yiydyl~k~~~~~~A~~~~~e~~~~~~ 41 (768)
-||.-|++||..+|+.+++.+|.+|.+++.+
T Consensus 12 EL~kaI~~YL~~~~~~~~~~alr~e~~~~~~ 42 (88)
T 1uuj_A 12 ELNRAIADYLRSNGYEEAYSVFKKEAELDMN 42 (88)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHhcCCCC
Confidence 5899999999999999999999999987754
No 355
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=87.38 E-value=28 Score=35.62 Aligned_cols=143 Identities=15% Similarity=0.099 Sum_probs=73.9
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEe
Q 004207 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 636 (768)
Q Consensus 557 ~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~ 636 (768)
.|..|+...+. .++. . ||.|+.|-......+-.-..-...|..|+.-.+ +.+.-. ||.|+.|-...... +-..
T Consensus 64 ~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gq-lg~~ 136 (282)
T 3qhy_B 64 GVDAIAAGNYH-SLAL-K-DGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQ-TTVP 136 (282)
T ss_dssp CCCEEEECSSE-EEEE-E-TTEEEEEECCTTSTTCCCGGGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTST-TSCC
T ss_pred CEEEEEeCCCE-EEEE-E-CCEEEEeeCCCCCCCCCCcccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCc-CCCC
Confidence 46666664332 2333 4 899999975432211111111246777776544 344445 99999997654322 1111
Q ss_pred ecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCC-CeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCC
Q 004207 637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVET 713 (768)
Q Consensus 637 ~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~s-g~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t 713 (768)
......|..|+.-.. +.++. . ||.|+.|-... +.+-........|..++.-.. ..++. .|+.|+.|=...
T Consensus 137 ~~~~~~i~~i~~G~~--~~~~l-~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~--hs~al-~~G~v~~wG~n~ 207 (282)
T 3qhy_B 137 AEAQSGVTALDGGVY--TALAV-K-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIF--HSLAL-KDGKVIAWGDNR 207 (282)
T ss_dssp GGGGSSEEEEEECSS--EEEEE-E-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSS--EEEEE-ETTEEEEEECCT
T ss_pred ccCCCCeEEEEcccC--EEEEE-E-CCEEEEecCCCCCCCCCceecCCCeEEEEecCC--EEEEE-ECCeEEEEECCC
Confidence 112345777765433 23332 3 78999997653 222111112345666665543 33333 588888886543
No 356
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=85.95 E-value=39 Score=35.86 Aligned_cols=149 Identities=7% Similarity=-0.035 Sum_probs=71.9
Q ss_pred CCCeEEEEEcC--CCCEEEEEeCCC----cEEEEECCCCeEEEEecc--------------CCCCEEEEEEcC-C-CCEE
Q 004207 555 TSKVESCHFSP--DGKLLATGGHDK----KAVLWCTESFTVKSTLEE--------------HTQWITDVRFSP-S-LSRL 612 (768)
Q Consensus 555 ~~~I~sl~fSp--dg~~LaSgs~Dg----~I~VWdl~t~~~~~tl~~--------------h~~~V~sl~fsp-d-g~~L 612 (768)
...|.+|++.| ++.+++ ++..| .|...+ +.++.-..+.. +...|.+|++.| + ...|
T Consensus 54 ~~~v~~i~~dp~~~~~l~~-g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l 131 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLM-AARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTW 131 (394)
T ss_dssp TSEEEEEEECSSSTTCEEE-EEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCE
T ss_pred CCceEEEEECCCCCCeEEE-EecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEE
Confidence 34699999998 454444 44444 344332 22222111110 112578899987 2 4556
Q ss_pred EEEeCCCcEEEEECCCCCeeEEEee-------------------cCCCCeEEEEEeCCC-CeEEEEEeCCCcEEEEECCC
Q 004207 613 ATSSADRTVRVWDTENPDYSLRTFT-------------------GHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINN 672 (768)
Q Consensus 613 aTgs~DgtIrVWDl~t~~~~~~~~~-------------------~h~~~V~slafsp~g-~~lLaSgs~Dg~I~iWDl~s 672 (768)
+.+...+.|...+-. ++. -..+. .....|.+|.++|.. ..+++ +..++.|...+ ..
T Consensus 132 ~~g~~~ggl~~S~Dg-G~t-W~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~v-g~~~ggl~~s~-Dg 207 (394)
T 3b7f_A 132 YAGTSPQGLFRSTDH-GAS-WEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYI-GMSSGGVFEST-DA 207 (394)
T ss_dssp EEEEETTEEEEESST-TSB-CEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEE-EEETBEEEEES-ST
T ss_pred EEEecCCcEEEEcCC-CCC-eEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEE-EECCCCEEEEC-CC
Confidence 666666655544322 111 11111 012357899998843 34443 33344443332 22
Q ss_pred CeeEEEEec--------------CCCeeEEEEecCC-CEEEEEEcCCeEEEEE
Q 004207 673 GSCAGVFKC--------------QSGATQMRFQPRL-GRILAAAIENYISILD 710 (768)
Q Consensus 673 g~~i~~~~~--------------~~~i~sl~fsp~~-~~llags~Dg~I~IwD 710 (768)
++.-..+.. ...+.++.++|.. +.+++++. +.|...+
T Consensus 208 G~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~-~gl~~s~ 259 (394)
T 3b7f_A 208 GTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNH-CGIYRMD 259 (394)
T ss_dssp TSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEET-TEEEEEE
T ss_pred CCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcC-CeEEEeC
Confidence 222222211 1237788898863 56666654 4455444
No 357
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=85.30 E-value=43 Score=35.76 Aligned_cols=150 Identities=10% Similarity=0.054 Sum_probs=81.6
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCC-----------eEEEEecc-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004207 558 VESCHFSPDGKLLATGGHDKKAVLWCTESF-----------TVKSTLEE-HTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (768)
Q Consensus 558 I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~-----------~~~~tl~~-h~~~V~sl~fspdg~~LaTgs~DgtIrVWD 625 (768)
|..|+. .....+.-..||.|+.|-.... .....+.. ....+..++++....+.+....||.|+.|-
T Consensus 55 i~~i~~--G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG 132 (389)
T 3kci_A 55 PVQLIG--GEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWG 132 (389)
T ss_dssp EEEEEE--ETTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEE
T ss_pred eEEEEe--CCCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEe
Confidence 445543 3445555567888888853321 11112221 223466677777677777788999999996
Q ss_pred CCCCC---------e-eEEEeec-CCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCC-C--------eeE--EEEec--
Q 004207 626 TENPD---------Y-SLRTFTG-HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-G--------SCA--GVFKC-- 681 (768)
Q Consensus 626 l~t~~---------~-~~~~~~~-h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~s-g--------~~i--~~~~~-- 681 (768)
..... . ....+.. ....|..|+.-. . ..+.-..||.|+.|-... + ... ..+..
T Consensus 133 ~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G~--~-hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~ 209 (389)
T 3kci_A 133 EAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGG--A-HSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQ 209 (389)
T ss_dssp CCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECS--S-EEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGT
T ss_pred CCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeCc--C-eEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccC
Confidence 54211 1 0111111 122566666542 2 333455689999996532 1 111 11111
Q ss_pred CCCeeEEEEecCCCEEEEEEcCCeEEEEECC
Q 004207 682 QSGATQMRFQPRLGRILAAAIENYISILDVE 712 (768)
Q Consensus 682 ~~~i~sl~fsp~~~~llags~Dg~I~IwD~~ 712 (768)
...|..++.-....+.++...|+.|+.|-..
T Consensus 210 ~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n 240 (389)
T 3kci_A 210 GHRVVDIACGSGDAQTLCLTDDDTVWSWGDG 240 (389)
T ss_dssp TSCEEEEEECCSSCEEEEEETTTEEEEEECC
T ss_pred CCeEEEEEEcCCCcEEEEEccCCEEEEEeCC
Confidence 2345666654433567778889999988654
No 358
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=85.24 E-value=2.2 Score=45.57 Aligned_cols=110 Identities=6% Similarity=0.086 Sum_probs=68.5
Q ss_pred CEEEEEeCCCcEEEEECCCCCeeEEEeecC-CCCeEEEEEe--CCCCeEEEEE-eCCCcEEEEECCCCeeEEEEecCCCe
Q 004207 610 SRLATSSADRTVRVWDTENPDYSLRTFTGH-STTVMSLDFH--PSKEDLLCSC-DNNSEIRYWSINNGSCAGVFKCQSGA 685 (768)
Q Consensus 610 ~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h-~~~V~slafs--p~g~~lLaSg-s~Dg~I~iWDl~sg~~i~~~~~~~~i 685 (768)
.+++.++.||.|+-+|.++++. +-.+... ..++....-. +.+..+++.. ..||.|..+|..+|.....+.....+
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~-~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv 89 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHI-IWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV 89 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEE-EEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred CEEEEEeCCCeEEEEECCCCcE-EEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence 4788899999999999988775 3333322 1222221100 1122445443 57999999999988665555432111
Q ss_pred e--EEEEe-----------cCCCEEEEEEcCCeEEEEECCCceEeeec
Q 004207 686 T--QMRFQ-----------PRLGRILAAAIENYISILDVETQVCRLKL 720 (768)
Q Consensus 686 ~--sl~fs-----------p~~~~llags~Dg~I~IwD~~t~~~~~~~ 720 (768)
. -+... ..++.+++++.++.+..+|+.+++....+
T Consensus 90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~ 137 (339)
T 2be1_A 90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAF 137 (339)
T ss_dssp TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEE
T ss_pred eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEE
Confidence 1 01211 14578899999999999999998766544
No 359
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=84.74 E-value=29 Score=36.54 Aligned_cols=155 Identities=9% Similarity=-0.004 Sum_probs=91.7
Q ss_pred CCeEEEEEcC---CCCEEEEEeCCCcEEEEECCCCe-------EEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004207 556 SKVESCHFSP---DGKLLATGGHDKKAVLWCTESFT-------VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (768)
Q Consensus 556 ~~I~sl~fSp---dg~~LaSgs~Dg~I~VWdl~t~~-------~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWD 625 (768)
..|.++..-. +..+++.++.+|.|+...+.... ....+.. .+.+..+........|+..+..|.+..+.
T Consensus 95 e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf~ 173 (327)
T 3uc1_A 95 ERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRFS 173 (327)
T ss_dssp CCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEE
T ss_pred CEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEEE
Confidence 3455443333 57799999999999998765422 2223443 34455555555556788888999888887
Q ss_pred CC--CC----C----eeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCC-------eeEEEEec---CCCe
Q 004207 626 TE--NP----D----YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-------SCAGVFKC---QSGA 685 (768)
Q Consensus 626 l~--t~----~----~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg-------~~i~~~~~---~~~i 685 (768)
.. .- . .....+. ....|.++...+.+.. ++..+..|.++.-.+... .-+..++. .+.+
T Consensus 174 ~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~-ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~l 251 (327)
T 3uc1_A 174 ATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTY-LLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRL 251 (327)
T ss_dssp CCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCE-EEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSE
T ss_pred CcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCE-EEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeE
Confidence 76 21 1 0011122 2355777666555444 446677899888776421 22222222 3345
Q ss_pred eEEEEecCCCEEEEEEcCCeEEEEECCC
Q 004207 686 TQMRFQPRLGRILAAAIENYISILDVET 713 (768)
Q Consensus 686 ~sl~fsp~~~~llags~Dg~I~IwD~~t 713 (768)
..+........++..+.+|.+..|+...
T Consensus 252 v~~~~~~~~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 252 VGALIVDDDSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp EEEEEECTTCEEEEEEGGGCEEEEEGGG
T ss_pred EEEEEeCCCccEEEEcCCCeEEEEehhh
Confidence 5554444456788888888887777654
No 360
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=84.20 E-value=46 Score=35.24 Aligned_cols=136 Identities=10% Similarity=0.024 Sum_probs=65.4
Q ss_pred CEEEEEeCCCcEEEEECCC----CeEEEEeccCCCCEEEEEEcC-CCCEEEEEeCCC----cEEEEECCCCCeeEEEee-
Q 004207 568 KLLATGGHDKKAVLWCTES----FTVKSTLEEHTQWITDVRFSP-SLSRLATSSADR----TVRVWDTENPDYSLRTFT- 637 (768)
Q Consensus 568 ~~LaSgs~Dg~I~VWdl~t----~~~~~tl~~h~~~V~sl~fsp-dg~~LaTgs~Dg----tIrVWDl~t~~~~~~~~~- 637 (768)
..|++|...| +.+++... .+..... .....|.+|++.| +...|+.++..| .|...+ +.+.. -..+.
T Consensus 23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~-~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~t-W~~~~~ 98 (394)
T 3b7f_A 23 VMLLVATIKG-AWFLASDPARRTWELRGPV-FLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGN-WTEATR 98 (394)
T ss_dssp CEEEEEETTE-EEEEEECTTSCSEEEEEEE-STTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSC-CEECSB
T ss_pred CEEEEEecCc-eEEEECCCCCCCceECCcc-CCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCC-ceECCc
Confidence 3566777766 55555432 2222111 2235699999998 333444454444 344332 22221 11111
Q ss_pred -----c--------CCCCeEEEEEeCC--CCeEEEEEeCCCcEEEEECCCCeeEEEEe--------------------cC
Q 004207 638 -----G--------HSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINNGSCAGVFK--------------------CQ 682 (768)
Q Consensus 638 -----~--------h~~~V~slafsp~--g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~--------------------~~ 682 (768)
. ....|.+|++.|. ...++ ++...+.|...+- .++.-..+. ..
T Consensus 99 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~-~g~~~ggl~~S~D-gG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~ 176 (394)
T 3b7f_A 99 PPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWY-AGTSPQGLFRSTD-HGASWEPVAGFNDHPMRRAWTGGEQDGTPDG 176 (394)
T ss_dssp CCCCCCCC----CCCCCEEEEEEECCTTSTTCEE-EEEETTEEEEESS-TTSBCEECHHHHTCTTHHHHHCCC----CCC
T ss_pred cccCCCcccccccccccceeEEEeCCCCCCCEEE-EEecCCcEEEEcC-CCCCeEECcCccCCccccccccccccCCCCC
Confidence 0 1125778999873 34454 4444555544422 222211111 11
Q ss_pred CCeeEEEEecC-CCEEEEEEcCCeEEEE
Q 004207 683 SGATQMRFQPR-LGRILAAAIENYISIL 709 (768)
Q Consensus 683 ~~i~sl~fsp~-~~~llags~Dg~I~Iw 709 (768)
..+.+|.++|. .+.++++..++.|...
T Consensus 177 ~~i~~i~~d~~~~~~l~vg~~~ggl~~s 204 (394)
T 3b7f_A 177 PKMHSILVDPRDPKHLYIGMSSGGVFES 204 (394)
T ss_dssp CEEEEEEECTTCTTCEEEEEETBEEEEE
T ss_pred CceeEEEECCCCCCEEEEEECCCCEEEE
Confidence 24678888874 3556666666555444
No 361
>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A
Probab=81.34 E-value=1 Score=38.33 Aligned_cols=32 Identities=25% Similarity=0.424 Sum_probs=28.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhcCCCCCC
Q 004207 11 MLDVYIYDYLLKRKLHASAKAFQTEGKVSTDP 42 (768)
Q Consensus 11 ~L~~yiydyl~k~~~~~~A~~~~~e~~~~~~~ 42 (768)
-+|--||-||...|+..||-+|-+|.++...+
T Consensus 7 evN~LI~RYLqEsGf~hsAf~f~~Es~i~~~~ 38 (90)
T 2xtc_A 7 EVNFLVYRYLQESGFSHSAFTFGIESHISQSN 38 (90)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHTTGGGSC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhcCCccc
Confidence 48999999999999999999999999887543
No 362
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=81.08 E-value=48 Score=34.71 Aligned_cols=191 Identities=7% Similarity=0.013 Sum_probs=103.1
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCe----EEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC---CCC-----ee
Q 004207 565 PDGKLLATGGHDKKAVLWCTESFT----VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE---NPD-----YS 632 (768)
Q Consensus 565 pdg~~LaSgs~Dg~I~VWdl~t~~----~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~---t~~-----~~ 632 (768)
|+..++++.+.+|.|+--.+...+ ....++.. +.+..+........|+..+..|.++-+... ... .+
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke~-D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~ 81 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKDT-DRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQH 81 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCTT-CCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEE
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCCC-CEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcC
Confidence 456678888999998876544211 11123333 345555554455677777788876555442 111 11
Q ss_pred EE---EeecCCCCeEEEEEeCC--CCeEEEEEeCCCcEEEEECCC--------CeeEEEEecCCCeeEEEEecCCCEEEE
Q 004207 633 LR---TFTGHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINN--------GSCAGVFKCQSGATQMRFQPRLGRILA 699 (768)
Q Consensus 633 ~~---~~~~h~~~V~slafsp~--g~~lLaSgs~Dg~I~iWDl~s--------g~~i~~~~~~~~i~sl~fsp~~~~lla 699 (768)
+. .+. ....|.++...++ ....++.++.+|.++-..+.. |.....+...+.+..+........++.
T Consensus 82 i~~~i~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~d~lv~~~~~~~~~~i~l 160 (323)
T 1wp5_A 82 IANIIPID-RDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNELFL 160 (323)
T ss_dssp GGGTSCCC-TTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEEEE
T ss_pred hhhccCCC-CCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCCCEEEEEEEeCCCCEEEE
Confidence 10 111 2344665543332 123455778899999987742 222222333455655555555567889
Q ss_pred EEcCCeEEEEECCCceEeee-cceeEEeecCCCceEEeccCCCCeeEEEEeCCCC-EEEEEECCCcEEE
Q 004207 700 AAIENYISILDVETQVCRLK-LQTLELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVASASHDKCVKI 766 (768)
Q Consensus 700 gs~Dg~I~IwD~~t~~~~~~-~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~-~LaSgs~DG~V~I 766 (768)
.+.+|.+..|+...-....+ -..+++.++ . ..+.|.++...+++. .|++.+..|..+.
T Consensus 161 ~T~~G~~irf~~~ev~~~gR~a~GV~~i~L--------~-~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr 220 (323)
T 1wp5_A 161 VTHNGYALWFDESEVSIVGVRAAGVKGMNL--------K-EGDYIVSGQLITSKDESIVVATQRGAVKK 220 (323)
T ss_dssp EETTSEEEEEEGGGSCBCCSSCCCEECCCC--------C-TTCCEEEEEEECCTTCEEEEEETTSEEEE
T ss_pred EeCCCcEEEEEHHHCcccCCCCcCEEEEEe--------C-CCCEEEEEEEEcCCCcEEEEEECCCceEE
Confidence 99999988888765322111 112222222 1 233455555444455 7888888887654
No 363
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=80.82 E-value=62 Score=35.70 Aligned_cols=104 Identities=12% Similarity=0.034 Sum_probs=58.9
Q ss_pred CeEEEEEcCCCC-EEEEEeCCCcEEEEECCCC---eEEEEec---------cCCCCEEEEEEcCC----CCEEEEEeC--
Q 004207 557 KVESCHFSPDGK-LLATGGHDKKAVLWCTESF---TVKSTLE---------EHTQWITDVRFSPS----LSRLATSSA-- 617 (768)
Q Consensus 557 ~I~sl~fSpdg~-~LaSgs~Dg~I~VWdl~t~---~~~~tl~---------~h~~~V~sl~fspd----g~~LaTgs~-- 617 (768)
.-..|+|.|||. .|+++...|.|++++.... ..+..+. .....+..|+|+|+ +.+.++-+.
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~ 94 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ 94 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence 467899999996 4555667899999975432 1222221 11356889999996 333333222
Q ss_pred C----------CcEEEEECCCC---------CeeEEEee--cCCCCeEEEEEeCCCCeEEEEEe
Q 004207 618 D----------RTVRVWDTENP---------DYSLRTFT--GHSTTVMSLDFHPSKEDLLCSCD 660 (768)
Q Consensus 618 D----------gtIrVWDl~t~---------~~~~~~~~--~h~~~V~slafsp~g~~lLaSgs 660 (768)
+ ..|.-|.+... ...+..+. ........|+|.|||..++.+|+
T Consensus 95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd 158 (463)
T 2wg3_C 95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD 158 (463)
T ss_dssp CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence 1 13444655421 11122222 12234688999999975555554
No 364
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=80.29 E-value=61 Score=33.99 Aligned_cols=154 Identities=12% Similarity=0.070 Sum_probs=87.9
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEE---CCC------CeEEEE---eccCCCCEEEE-EEcC--CCCEEEEEeCCCcEE
Q 004207 558 VESCHFSPDGKLLATGGHDKKAVLWC---TES------FTVKST---LEEHTQWITDV-RFSP--SLSRLATSSADRTVR 622 (768)
Q Consensus 558 I~sl~fSpdg~~LaSgs~Dg~I~VWd---l~t------~~~~~t---l~~h~~~V~sl-~fsp--dg~~LaTgs~DgtIr 622 (768)
+..+........|+..+..|.++-.. +.. |..+.. +. ....|.++ .+.. +..++++++.+|.|+
T Consensus 44 ~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~e~~~v~~T~~G~iK 122 (327)
T 3uc1_A 44 VAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQ-PEERIAQVIQIRGYTDAPYLVLATRNGLVK 122 (327)
T ss_dssp EEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCC-TTCCEEEEEEESSTTSSSEEEEEETTSEEE
T ss_pred EEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCC-CCCEEEEEEEeccCCCCCEEEEEcCCCEEE
Confidence 44444444555666666777766543 332 222211 22 23445555 4432 477999999999999
Q ss_pred EEECCCCC------eeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECC--C---------CeeEEEEecCCCe
Q 004207 623 VWDTENPD------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN--N---------GSCAGVFKCQSGA 685 (768)
Q Consensus 623 VWDl~t~~------~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~--s---------g~~i~~~~~~~~i 685 (768)
...+..-. .....+.. ...+..+........++ ..+..|.+..+.+. . |...-.+.....|
T Consensus 123 r~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~il-l~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~d~V 200 (327)
T 3uc1_A 123 KSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLL-LVSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDRL 200 (327)
T ss_dssp EEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEE-EEETTSEEEEEECCTTTSCCCCTTSBCEESSCCCTTCCE
T ss_pred EeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEE-EEECCCeEEEEECcccccCcCCcCCCCeeeecCCCCCEE
Confidence 98875421 11112332 34555555544445455 45567888777665 2 1111122234557
Q ss_pred eEEEEecCCCEEEEEEcCCeEEEEECCCc
Q 004207 686 TQMRFQPRLGRILAAAIENYISILDVETQ 714 (768)
Q Consensus 686 ~sl~fsp~~~~llags~Dg~I~IwD~~t~ 714 (768)
..+...+.+.+++.++..|.++...+...
T Consensus 201 v~~~~~~~~~~ll~~T~~G~~Krt~l~e~ 229 (327)
T 3uc1_A 201 LSLNVVREGTYLLVATSGGYAKRTAIEEY 229 (327)
T ss_dssp EEEEECCTTCEEEEEETTSEEEEEEGGGS
T ss_pred EEEEEECCCCEEEEEeCCCcEEEEEHHHc
Confidence 77766666678999999999888776554
No 365
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=78.91 E-value=73 Score=34.06 Aligned_cols=149 Identities=10% Similarity=0.022 Sum_probs=87.8
Q ss_pred cCCCCEEEEEeCCCcEEEEECCC---------CeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC---CCCC-
Q 004207 564 SPDGKLLATGGHDKKAVLWCTES---------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT---ENPD- 630 (768)
Q Consensus 564 Spdg~~LaSgs~Dg~I~VWdl~t---------~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl---~t~~- 630 (768)
-++..++++.+.+|.|+--.+.+ +.....++. .+.+..+........|+..+..|.++-+.. ....
T Consensus 4 I~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke-~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r 82 (370)
T 3l6v_A 4 IAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKE-EDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGS 82 (370)
T ss_dssp CCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSC-CCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCT
T ss_pred ccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCC-CCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCc
Confidence 36777899999999999765432 222334443 455666666666667777788887665543 2211
Q ss_pred ----eeEE---EeecCCCCeEEEEEeCC--CCeEEEEEeCCCcEEEEECCC-------CeeEEEEecCCCeeEEEEecCC
Q 004207 631 ----YSLR---TFTGHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINN-------GSCAGVFKCQSGATQMRFQPRL 694 (768)
Q Consensus 631 ----~~~~---~~~~h~~~V~slafsp~--g~~lLaSgs~Dg~I~iWDl~s-------g~~i~~~~~~~~i~sl~fsp~~ 694 (768)
..+. .+. ....|.++....+ ....|+.++..|.++...+.. |.....++....+..+......
T Consensus 83 ~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~~d~lv~v~~~~~~ 161 (370)
T 3l6v_A 83 NARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDEGDALVGVALTDGD 161 (370)
T ss_dssp TSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCTTCCEEEEEEECSC
T ss_pred ccCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCCCCEEEEEEEeCCC
Confidence 1111 122 2345666544321 233555778899999887643 2222223334455555555555
Q ss_pred CEEEEEEcCCeEEEEECCCc
Q 004207 695 GRILAAAIENYISILDVETQ 714 (768)
Q Consensus 695 ~~llags~Dg~I~IwD~~t~ 714 (768)
..++..+.+|.+..|+...-
T Consensus 162 ~~i~l~T~~G~~irf~~~~v 181 (370)
T 3l6v_A 162 RDVLLFASNGKTVRFGESTV 181 (370)
T ss_dssp CEEEEEETTSEEEEEEGGGS
T ss_pred ceEEEEeCCCeEEEEEcccc
Confidence 67888999999888876553
No 366
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=78.43 E-value=1.3e+02 Score=36.50 Aligned_cols=36 Identities=17% Similarity=0.358 Sum_probs=31.2
Q ss_pred eeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeec
Q 004207 685 ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL 720 (768)
Q Consensus 685 i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~ 720 (768)
+.+++..++..++++.+.|+++++|++.++.++...
T Consensus 238 ~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 238 IISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp EEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred EEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 567778888889999999999999999999887653
No 367
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=76.17 E-value=76 Score=32.82 Aligned_cols=191 Identities=9% Similarity=0.052 Sum_probs=101.1
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEE---------EeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC---CCCC---
Q 004207 566 DGKLLATGGHDKKAVLWCTESFTVKS---------TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT---ENPD--- 630 (768)
Q Consensus 566 dg~~LaSgs~Dg~I~VWdl~t~~~~~---------tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl---~t~~--- 630 (768)
+..++++.+.+|.|+--.+.+.+... .++.+ +.+..+........|+..+..|.++-+.. ....
T Consensus 2 ~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~-D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a 80 (307)
T 1zi0_A 2 QEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEE-DFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGA 80 (307)
T ss_dssp CCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSS
T ss_pred CCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCC-CEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCC
Confidence 45678888999999877765533221 12222 34444444444566777778887655544 2211
Q ss_pred --eeEE---EeecCCCCeEEEEEeC--CCCeEEEEEeCCCcEEEEECCC-------CeeEEEEecCCCeeEEEEecCCCE
Q 004207 631 --YSLR---TFTGHSTTVMSLDFHP--SKEDLLCSCDNNSEIRYWSINN-------GSCAGVFKCQSGATQMRFQPRLGR 696 (768)
Q Consensus 631 --~~~~---~~~~h~~~V~slafsp--~g~~lLaSgs~Dg~I~iWDl~s-------g~~i~~~~~~~~i~sl~fsp~~~~ 696 (768)
.++. .+. ....|.++...+ +....++..+.+|.++-..+.. +.....+...+.+..+........
T Consensus 81 ~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~d~lv~~~~~~~~~~ 159 (307)
T 1zi0_A 81 RGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDE 159 (307)
T ss_dssp CCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTTCCEEEEEEECTTCE
T ss_pred CCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCCCEEEEEEEeCCCCE
Confidence 1111 122 234566654422 1223455777899999987642 212122223455655555555567
Q ss_pred EEEEEcCCeEEEEECCCceEeee-cceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 004207 697 ILAAAIENYISILDVETQVCRLK-LQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 767 (768)
Q Consensus 697 llags~Dg~I~IwD~~t~~~~~~-~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IW 767 (768)
++..+.+|.+..|+...-..... -..++.. .+. ..+.|.++....++..|++.+..|.++-.
T Consensus 160 i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i--------~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~ 222 (307)
T 1zi0_A 160 VMLFSAEGKVVRFKESSVRAMGCNTTGVRGI--------RLG-EGDKVVSLIVPRGDGAILTATQNGYGKRT 222 (307)
T ss_dssp EEEEETTSEEEEEEGGGSCBCCTTCCCEECC--------CCC-TTCCEEEEECCCSSCEEEEEETTSEEEEE
T ss_pred EEEECCCCcEEEEEHHHcCccCCCCCCeEeE--------EeC-CCCEEEEEEEecCCCEEEEEEcCCceEEE
Confidence 88999999988887755322111 0011111 222 23445566544555678888888887754
No 368
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=75.85 E-value=45 Score=34.00 Aligned_cols=142 Identities=13% Similarity=0.055 Sum_probs=70.2
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEe
Q 004207 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 636 (768)
Q Consensus 557 ~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~ 636 (768)
.|..|+..... .++. . ||.|+.|-......+..-......|..|+...+. .++. . ||.|+.|-...... +-.-
T Consensus 25 ~i~~ia~G~~h-~~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~~Gq-lg~P 97 (282)
T 3qhy_B 25 GVDAIAGGYFH-GLAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYH-SLAL-K-DGEVIAWGGNEDGQ-TTVP 97 (282)
T ss_dssp SCCEEEECSSE-EEEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSE-EEEE-E-TTEEEEEECCTTST-TCCC
T ss_pred CCcEEEeCCCe-EEEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCE-EEEE-E-CCEEEEeeCCCCCC-CCCC
Confidence 35566654322 2333 4 8889988654322111111112356667665432 2333 4 89999998654322 1111
Q ss_pred ecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCC-CeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECC
Q 004207 637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVE 712 (768)
Q Consensus 637 ~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~s-g~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~ 712 (768)
..-...|..|+.-.. +.+ .-. ||.|+.|-... +.+-........|..++.-.. +.++.. |+.|+.|-..
T Consensus 98 ~~~~~~v~~ia~G~~--hs~-al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~--~~~~l~-~G~v~~wG~n 167 (282)
T 3qhy_B 98 AEARSGVDAIAAGAW--ASY-ALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVY--TALAVK-NGGVIAWGDN 167 (282)
T ss_dssp GGGSSSEEEEEEETT--EEE-EEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSS--EEEEEE-TTEEEEEECC
T ss_pred cccCCCeEEEECcCC--EEE-EEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccC--EEEEEE-CCEEEEecCC
Confidence 111346777776643 233 334 89999997643 222111112344555554433 333333 6777777554
No 369
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=74.61 E-value=29 Score=38.45 Aligned_cols=105 Identities=16% Similarity=0.127 Sum_probs=60.6
Q ss_pred CCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCC--eeEEEee---------cCCCCeEEEEEeCC---CCeEEEEEeC-
Q 004207 598 QWITDVRFSPSLS-RLATSSADRTVRVWDTENPD--YSLRTFT---------GHSTTVMSLDFHPS---KEDLLCSCDN- 661 (768)
Q Consensus 598 ~~V~sl~fspdg~-~LaTgs~DgtIrVWDl~t~~--~~~~~~~---------~h~~~V~slafsp~---g~~lLaSgs~- 661 (768)
...+.|+|.|++. .|+++...|.|++++.+... ..+..+. .....+..|+|+|+ ...++++-+.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 3468999999986 56666789999999754321 1111111 11356889999996 2344444332
Q ss_pred -C----------CcEEEEECCC----------CeeEEEEec---CCCeeEEEEecCCCEEEEEEc
Q 004207 662 -N----------SEIRYWSINN----------GSCAGVFKC---QSGATQMRFQPRLGRILAAAI 702 (768)
Q Consensus 662 -D----------g~I~iWDl~s----------g~~i~~~~~---~~~i~sl~fsp~~~~llags~ 702 (768)
+ ..|.-|.+.. .+.+..+.. .+....|+|.|++..+++.+.
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd 158 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD 158 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence 1 1344455532 123333331 344678999999865555443
No 370
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=72.51 E-value=1.2e+02 Score=35.30 Aligned_cols=112 Identities=9% Similarity=0.022 Sum_probs=58.7
Q ss_pred EEEE-EcCCCCEEEEE-eCC----CcEEEEECCCCeEEEE-ec-cCCC------CEEEEEEcCCCCEEEEEeC-------
Q 004207 559 ESCH-FSPDGKLLATG-GHD----KKAVLWCTESFTVKST-LE-EHTQ------WITDVRFSPSLSRLATSSA------- 617 (768)
Q Consensus 559 ~sl~-fSpdg~~LaSg-s~D----g~I~VWdl~t~~~~~t-l~-~h~~------~V~sl~fspdg~~LaTgs~------- 617 (768)
..+. ++|++++++.+ +.. ..|+++|+.+++.+.. +. .-+. ....++|..+. .++.+..
T Consensus 132 ~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~-~~~~~~~~~~~~~~ 210 (711)
T 4hvt_A 132 RGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKD-TIIFNLVLHKNEIT 210 (711)
T ss_dssp EEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETT-EEEECCCCSTTCBC
T ss_pred eceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCC-EEEEEeCCCCCCcC
Confidence 3344 78899876654 322 3699999999887631 11 0000 11334776443 4444321
Q ss_pred ----CCcEEEEECCCCC-eeEEEeecCCCCe-EEEEEeCCCCe----EEEEEeC---CCcEEEEECC
Q 004207 618 ----DRTVRVWDTENPD-YSLRTFTGHSTTV-MSLDFHPSKED----LLCSCDN---NSEIRYWSIN 671 (768)
Q Consensus 618 ----DgtIrVWDl~t~~-~~~~~~~~h~~~V-~slafsp~g~~----lLaSgs~---Dg~I~iWDl~ 671 (768)
-..|+.|.+-+.. .....+.+....+ .+...++++.. ++++.+. ...+.+.|+.
T Consensus 211 ~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 277 (711)
T 4hvt_A 211 SSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTK 277 (711)
T ss_dssp TTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECS
T ss_pred cCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCC
Confidence 2468889887652 2233444433333 33445566553 4554432 2456666665
No 371
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=71.98 E-value=58 Score=39.48 Aligned_cols=38 Identities=16% Similarity=0.037 Sum_probs=33.8
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEe
Q 004207 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL 593 (768)
Q Consensus 556 ~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl 593 (768)
..|.+++..++..++++-+.|++++||++.+++++.+.
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 35788888888899999999999999999999998775
No 372
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=71.53 E-value=1.1e+02 Score=32.63 Aligned_cols=149 Identities=8% Similarity=0.004 Sum_probs=78.2
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC----------e-EEEEecc-CCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q 004207 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESF----------T-VKSTLEE-HTQWITDVRFSPSLSRLATSSADRTVRV 623 (768)
Q Consensus 556 ~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~----------~-~~~tl~~-h~~~V~sl~fspdg~~LaTgs~DgtIrV 623 (768)
..|..|+.. ..+.+.-..||.|+.|-.... . ....+.. ....|..|+-- ..+.+....||.|+.
T Consensus 121 ~~i~~ia~G--~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~i~~va~G--~~hs~alt~~G~v~~ 196 (406)
T 4d9s_A 121 IRIKQIACG--DSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAG--AEHTAAVTEDGDLYG 196 (406)
T ss_dssp CCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTCCEEEEEEC--SSEEEEEETTSCEEE
T ss_pred CCEEEEEEC--hhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEecccCCCcEEEEecC--CCeEEEEeCCCCEEE
Confidence 357777763 445555568899999964321 1 1112221 12356666654 345666678999999
Q ss_pred EECCCCC---------e-eEEEeec-CCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCC-e--------e--EEEEec
Q 004207 624 WDTENPD---------Y-SLRTFTG-HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-S--------C--AGVFKC 681 (768)
Q Consensus 624 WDl~t~~---------~-~~~~~~~-h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg-~--------~--i~~~~~ 681 (768)
|-..... . ....+.. ....|..|+.-.. ..+.-..+|.|+.|-.... . . ...+..
T Consensus 197 wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~~---ht~~l~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~ 273 (406)
T 4d9s_A 197 WGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWR---HTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEA 273 (406)
T ss_dssp EECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECSS---EEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGG
T ss_pred eeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEECCC---cEEEEcCCCCEEEeeCCCCCCCCCCCCcCccccEEecc
Confidence 9754211 1 0111111 1235666655422 2334456899999964321 1 1 111111
Q ss_pred --CCCeeEEEEecCCCEEEEEEcCCeEEEEECCC
Q 004207 682 --QSGATQMRFQPRLGRILAAAIENYISILDVET 713 (768)
Q Consensus 682 --~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t 713 (768)
...|..++.- ..+.++...|+.|+.|=...
T Consensus 274 ~~~~~v~~i~~G--~~hs~alt~~G~v~~wG~n~ 305 (406)
T 4d9s_A 274 LSNSFISQISGG--WRHTMALTSDGKLYGWGWNK 305 (406)
T ss_dssp GTTSCEEEEEEC--SSEEEEEETTSCEEEEECCT
T ss_pred cCCCCEEEEEec--CCEEEEEcCCCeEEEeeCCC
Confidence 2235555443 34566777889898886543
No 373
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=71.13 E-value=1e+02 Score=31.95 Aligned_cols=196 Identities=10% Similarity=0.031 Sum_probs=106.4
Q ss_pred CCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004207 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (768)
Q Consensus 505 ~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl 584 (768)
.+.++...+.+|.|+.....+-...+ ....+ ...+ .++.+ +.+..+........++..+..|.++-+..
T Consensus 7 ~e~~~v~~T~~G~iKr~~~~~~~~~~-------~~~~g--~~~~-~lke~-D~l~~~~~~~~~~~ll~~T~~G~~~~~~~ 75 (312)
T 1suu_A 7 KENIVVMLTKKGFLKRLSQNEYKLQG-------TGGKG--LSSF-DLNDG-DEIVIALCVNTHDYLFMISNEGKLYLINA 75 (312)
T ss_dssp -CEEEEEEETTCBEEEEEGGGSCBCC-------SSCCC--EECC-CCCTT-CCEEEEEEEETTCEEEEEETTSEEEEEEG
T ss_pred CCCEEEEEeCCCEEEEeEHHHhhccc-------cCCCC--ceec-ccCCC-CEEEEEEEECCCCEEEEEECCCeEEEEEH
Confidence 45677888899999877332211000 00001 0001 12233 33444444445667777788888777654
Q ss_pred CC---C------eE---EEEeccCCCCEEEEEEcC---CCCEEEEEeCCCcEEEEECCCCC------eeEEEeecCCCCe
Q 004207 585 ES---F------TV---KSTLEEHTQWITDVRFSP---SLSRLATSSADRTVRVWDTENPD------YSLRTFTGHSTTV 643 (768)
Q Consensus 585 ~t---~------~~---~~tl~~h~~~V~sl~fsp---dg~~LaTgs~DgtIrVWDl~t~~------~~~~~~~~h~~~V 643 (768)
.. . .. ...+.. ...|.++...+ +..+|+.++..|.++...+..-. .....+.. .+.+
T Consensus 76 ~~ip~~~r~~~G~~i~~~l~l~~-~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~l 153 (312)
T 1suu_A 76 YEIKDSSRASKGQNISELINLGD-QEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFV 153 (312)
T ss_dssp GGSCC-------CBGGGTSCCCT-TCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCE
T ss_pred HHCCCCCccCCCcChhhccCCCC-CCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEE
Confidence 32 1 11 011222 23455543332 45688899999999998875321 11112232 4556
Q ss_pred EEEEEeCCCCeEEEEEeCCCcEEEEECCC-------CeeEEEE--ecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCc
Q 004207 644 MSLDFHPSKEDLLCSCDNNSEIRYWSINN-------GSCAGVF--KCQSGATQMRFQPRLGRILAAAIENYISILDVETQ 714 (768)
Q Consensus 644 ~slafsp~g~~lLaSgs~Dg~I~iWDl~s-------g~~i~~~--~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~ 714 (768)
..+........++ ..+.+|.+..+.+.. ..-+..+ .....+..+....++..+++.+..|.+..+++...
T Consensus 154 v~~~~~~~~~~i~-l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~ 232 (312)
T 1suu_A 154 TSAEIVFKDEKVI-CLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSKI 232 (312)
T ss_dssp EEEEEECTTCEEE-EEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGGGS
T ss_pred EEEEEeCCCCEEE-EEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEHHHh
Confidence 6665554444444 566688888887643 1122222 22445666665555667889999999888887654
No 374
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=69.33 E-value=1.4e+02 Score=35.11 Aligned_cols=151 Identities=15% Similarity=0.143 Sum_probs=77.7
Q ss_pred CCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCeEEEEeccC-------CCCEEEEEEcCC-CCEEEEEeCCCc----E
Q 004207 555 TSKVESCHFSPD-GKLLATGGHDKKAVLWCTESFTVKSTLEEH-------TQWITDVRFSPS-LSRLATSSADRT----V 621 (768)
Q Consensus 555 ~~~I~sl~fSpd-g~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h-------~~~V~sl~fspd-g~~LaTgs~Dgt----I 621 (768)
.+.|.+|+++|. ...+++++..+.|...+ +.++.-..+..+ ...|.+|+++|. ...++.+..+.. -
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~ 92 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA 92 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCccc
Confidence 457999999995 45666677777666654 233333233221 236999999984 344555443311 3
Q ss_pred EEEECCCCCeeEEEeec---------CCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-------CCCe
Q 004207 622 RVWDTENPDYSLRTFTG---------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-------QSGA 685 (768)
Q Consensus 622 rVWDl~t~~~~~~~~~~---------h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-------~~~i 685 (768)
.||--..+...-..... ....+..|+++|.....++.+...+.|. .....|+.-..+.. ...+
T Consensus 93 ~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~-~S~DgG~TW~~~~~~~~~~~~~~~~ 171 (789)
T 1sqj_A 93 AFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIW-KSSDRAKTWTNVTSIPDAFTNGIGY 171 (789)
T ss_dssp EEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEE-EESSTTSSCEEETTSCCCCSTTTCE
T ss_pred EEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEE-EECCCCcccCCCccCccccCCCCCe
Confidence 44543332221111111 0113567888886555555665343332 22222322222211 2457
Q ss_pred eEEEEecCC-CEEEEEEcC-CeEE
Q 004207 686 TQMRFQPRL-GRILAAAIE-NYIS 707 (768)
Q Consensus 686 ~sl~fsp~~-~~llags~D-g~I~ 707 (768)
..+.++|.. ..++++..+ +.|.
T Consensus 172 ~~i~~~p~~~~~~~~~~~~~~~v~ 195 (789)
T 1sqj_A 172 TSVIFDPERNGTIYASATAPQGMY 195 (789)
T ss_dssp EEEEECTTSTTCEEEEESSTTCEE
T ss_pred EEEEECCCCCCEEEEEEcCCCeEE
Confidence 788888853 466666654 4443
No 375
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=64.61 E-value=1.6e+02 Score=31.67 Aligned_cols=135 Identities=8% Similarity=0.117 Sum_probs=74.6
Q ss_pred cEEEEECCCC--eEEEEeccC------CCCEEEEEEc---CC----CCEEEEEe-CCCcEEEEECCCCCeeEEEee----
Q 004207 578 KAVLWCTESF--TVKSTLEEH------TQWITDVRFS---PS----LSRLATSS-ADRTVRVWDTENPDYSLRTFT---- 637 (768)
Q Consensus 578 ~I~VWdl~t~--~~~~tl~~h------~~~V~sl~fs---pd----g~~LaTgs-~DgtIrVWDl~t~~~~~~~~~---- 637 (768)
+|.+||+.+. ++++++.-. ...+.++++. |+ +.+++.+. ....|.|+|+.+++. -+...
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~s-wRv~~~~~~ 202 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDS-WNVTHPTFK 202 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEE-EEEECGGGS
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcE-EEEccCCCc
Confidence 6889999998 888777432 3457888887 22 33444443 467899999987653 22221
Q ss_pred ----------cC----CCCeEEEEEeCC----CCeEEEEEeCCCcEEEEE---CCCCe---eEEEEecC---CCeeEEEE
Q 004207 638 ----------GH----STTVMSLDFHPS----KEDLLCSCDNNSEIRYWS---INNGS---CAGVFKCQ---SGATQMRF 690 (768)
Q Consensus 638 ----------~h----~~~V~slafsp~----g~~lLaSgs~Dg~I~iWD---l~sg~---~i~~~~~~---~~i~sl~f 690 (768)
+. ...|..|+++|+ ++.+++..-....++-.. +++.. .+..+... .....+++
T Consensus 203 pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~ 282 (381)
T 3q6k_A 203 AERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAY 282 (381)
T ss_dssp CCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEE
T ss_pred cccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEE
Confidence 10 136788888887 555555444333333222 22221 12222212 22334556
Q ss_pred ecCCCEEEEE-EcCCeEEEEECCC
Q 004207 691 QPRLGRILAA-AIENYISILDVET 713 (768)
Q Consensus 691 sp~~~~llag-s~Dg~I~IwD~~t 713 (768)
++..+.|+.+ -..+.|..|+..+
T Consensus 283 D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 283 DPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp CTTTCEEEEEESSSSEEEEEETTS
T ss_pred eCCCCeEEEEeccCCeEEEEeCCC
Confidence 5433444444 4567788887765
No 376
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=62.60 E-value=1.4e+02 Score=30.36 Aligned_cols=156 Identities=9% Similarity=0.006 Sum_probs=92.1
Q ss_pred CCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCe------EEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004207 555 TSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFT------VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (768)
Q Consensus 555 ~~~I~sl~fSp-dg~~LaSgs~Dg~I~VWdl~t~~------~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~ 627 (768)
...|..+.... +..+++.++.+|.|+...+.... ....++. .+.+..+........|+..+..|.+..++..
T Consensus 67 ~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lke-gD~l~~~~~~~~~~~ill~T~~G~~~r~~~~ 145 (276)
T 3no0_A 67 EEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLTE-GDEVVSIASSVDETHILLFTKKGRVARFSVR 145 (276)
T ss_dssp TCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCCT-TCCEEEEEECCSSCEEEEEETTSEEEEEEGG
T ss_pred CCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecCC-CCEEEEEEEeCCCCEEEEEECCCEEEEEEhh
Confidence 44566664421 46789999999999999875532 2222333 3456666666566688888999998888754
Q ss_pred C----C---C-eeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCC-------CeeEEEEecCCCeeEEEEec
Q 004207 628 N----P---D-YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-------GSCAGVFKCQSGATQMRFQP 692 (768)
Q Consensus 628 t----~---~-~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~s-------g~~i~~~~~~~~i~sl~fsp 692 (768)
. + . .....+. ....|.++...+++..++ ..+..|.++...+.. ++-+..+...+.+..+....
T Consensus 146 eip~~gR~a~Gv~~i~L~-~~d~vv~~~~~~~~~~ll-~~T~~G~~kr~~~~e~~~~~R~gkGv~~i~~~~~lv~~~~~~ 223 (276)
T 3no0_A 146 EVPPSTPGARGVQGIKLE-KNDETSGLRIWNGEPYLL-VITAKGRVKKISHEEIPKTNRGVKGTEVSGTKDTLVDLIPIK 223 (276)
T ss_dssp GSCBCCTTCCCEECCCCC-TTCCEEEEEEESSCSEEE-EEETTSCEEEEEGGGSCCCCTTCCCEECCCSSSCEEEEEEES
T ss_pred hCCCcCCCCCCEEEEccC-CCCEEEEEEEeCCCCEEE-EEeCCCcEEEeEHHHcccCCCCCcceEEEcCCCcEEEEEEeC
Confidence 2 1 1 1111122 235566665555444444 667788888887642 22233333334455444433
Q ss_pred CCCEEEEEEcCCeEEE--EECCC
Q 004207 693 RLGRILAAAIENYISI--LDVET 713 (768)
Q Consensus 693 ~~~~llags~Dg~I~I--wD~~t 713 (768)
....++..+.+|.+.. ++...
T Consensus 224 ~~~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 224 EEVELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp SEEEEEEEETTSCEEEEEEEGGG
T ss_pred CCCEEEEEcCCCeEEEeeeCHHH
Confidence 3456777888888777 77654
No 377
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=61.83 E-value=1.5e+02 Score=30.54 Aligned_cols=153 Identities=9% Similarity=0.043 Sum_probs=85.3
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEC---CC------CeEEE---EeccCCCCEEEEEE-c--CCCCEEEEEeCCCcEE
Q 004207 558 VESCHFSPDGKLLATGGHDKKAVLWCT---ES------FTVKS---TLEEHTQWITDVRF-S--PSLSRLATSSADRTVR 622 (768)
Q Consensus 558 I~sl~fSpdg~~LaSgs~Dg~I~VWdl---~t------~~~~~---tl~~h~~~V~sl~f-s--pdg~~LaTgs~DgtIr 622 (768)
+..+........|+..+..|.++-+.. .. |..+. .+. ....|.++.. . .++.+++.++.+|.++
T Consensus 44 l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~K 122 (307)
T 1zi0_A 44 IDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVK 122 (307)
T ss_dssp EEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSSCCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEE
T ss_pred EEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCCCCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEE
Confidence 444444445666777778888666543 22 22211 122 2344655543 2 3456899999999999
Q ss_pred EEECCCC------CeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCC-------CeeEE--EEecCCCeeE
Q 004207 623 VWDTENP------DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-------GSCAG--VFKCQSGATQ 687 (768)
Q Consensus 623 VWDl~t~------~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~s-------g~~i~--~~~~~~~i~s 687 (768)
...+..- ......+..+ +.+..+........++ ..+.+|.+..+++.. ..-+. .+.....|..
T Consensus 123 rt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~~~i~-l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~ 200 (307)
T 1zi0_A 123 KTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGEDEVM-LFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVS 200 (307)
T ss_dssp EEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTTCEEE-EEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEE
T ss_pred EEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCCCEEE-EECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEE
Confidence 9877421 1111123333 4555555544444444 455678777776532 11122 2223455666
Q ss_pred EEEecCCCEEEEEEcCCeEEEEECCC
Q 004207 688 MRFQPRLGRILAAAIENYISILDVET 713 (768)
Q Consensus 688 l~fsp~~~~llags~Dg~I~IwD~~t 713 (768)
+....++..+++.+..|.++-.++..
T Consensus 201 ~~~~~~~~~ll~~T~~G~~Kr~~~~e 226 (307)
T 1zi0_A 201 LIVPRGDGAILTATQNGYGKRTAVAE 226 (307)
T ss_dssp EECCCSSCEEEEEETTSEEEEECGGG
T ss_pred EEEecCCCEEEEEEcCCceEEEEHHH
Confidence 65555556788888889888777644
No 378
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=54.16 E-value=2.1e+02 Score=29.77 Aligned_cols=190 Identities=6% Similarity=0.001 Sum_probs=100.4
Q ss_pred CCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004207 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (768)
Q Consensus 505 ~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl 584 (768)
.+.++++.+.+|.|+.-...+.... .. .+ ..++.+ +.+..+........|+..+..|.++-+..
T Consensus 4 ~e~~~v~lT~~G~IKr~~~~~~~~~-~~--------~~------~~lke~-D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~ 67 (323)
T 1wp5_A 4 SEDVIVTVTKDGYVKRTSLRSYAAS-NG--------QD------FAMKDT-DRLLAMLEMNTKDVLLLFTNKGNYLYCPV 67 (323)
T ss_dssp CCEEEEEEETTCEEEEEEHHHHHHT-TT--------CC------CCCCTT-CCEEEEEEEETTSEEEEEETTSEEEEEEG
T ss_pred CCcEEEEEeCCCEEEEeEHHHhhhc-Cc--------cc------cccCCC-CEEEEEEEECCCCEEEEEECCCEEEEEEH
Confidence 4567778888888887622110000 00 00 011222 23444444445666777778888766543
Q ss_pred C---C------CeEEE---EeccCCCCEEEE-EEcC--CCCEEEEEeCCCcEEEEECCCC-------CeeEEEeecCCCC
Q 004207 585 E---S------FTVKS---TLEEHTQWITDV-RFSP--SLSRLATSSADRTVRVWDTENP-------DYSLRTFTGHSTT 642 (768)
Q Consensus 585 ~---t------~~~~~---tl~~h~~~V~sl-~fsp--dg~~LaTgs~DgtIrVWDl~t~-------~~~~~~~~~h~~~ 642 (768)
. . |.++. .+. ....|.++ .... ++.+|+.++.+|.++...+..- ......+.. .+.
T Consensus 68 ~elp~~~r~a~G~~i~~~i~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e-~d~ 145 (323)
T 1wp5_A 68 HELPDIRWKDLGQHIANIIPID-RDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKN-DDQ 145 (323)
T ss_dssp GGSCBCCTTSCCEEGGGTSCCC-TTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCT-TCC
T ss_pred HHCcCCCCCCCCcChhhccCCC-CCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCC-CCE
Confidence 2 1 22211 122 22345554 3432 2568999999999999887421 111112222 245
Q ss_pred eEEEEEeCCCCeEEEEEeCCCcEEEEECCC-------CeeEEEEe--cCCCeeEEEEecCCC-EEEEEEcCCeEEEEECC
Q 004207 643 VMSLDFHPSKEDLLCSCDNNSEIRYWSINN-------GSCAGVFK--CQSGATQMRFQPRLG-RILAAAIENYISILDVE 712 (768)
Q Consensus 643 V~slafsp~g~~lLaSgs~Dg~I~iWDl~s-------g~~i~~~~--~~~~i~sl~fsp~~~-~llags~Dg~I~IwD~~ 712 (768)
+..+........++ ..+.+|.+..+++.. ..-+..+. ....|..+...+.+. .+++.+..|..+..++.
T Consensus 146 lv~~~~~~~~~~i~-l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~ 224 (323)
T 1wp5_A 146 VVDVHLTDGMNELF-LVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLT 224 (323)
T ss_dssp EEEEEEECSCSEEE-EEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGG
T ss_pred EEEEEEeCCCCEEE-EEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHH
Confidence 55555544444444 556678887776632 11222222 244566665544445 78888888888777765
Q ss_pred C
Q 004207 713 T 713 (768)
Q Consensus 713 t 713 (768)
.
T Consensus 225 e 225 (323)
T 1wp5_A 225 E 225 (323)
T ss_dssp G
T ss_pred H
Confidence 5
No 379
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=51.68 E-value=2.5e+02 Score=30.01 Aligned_cols=84 Identities=10% Similarity=0.046 Sum_probs=50.8
Q ss_pred cEEEEECCCC--CeeEEEeec------CCCCeEEEEEe---CC----CCeEEEEEeCCCcEEEEECCCCeeEEEEec---
Q 004207 620 TVRVWDTENP--DYSLRTFTG------HSTTVMSLDFH---PS----KEDLLCSCDNNSEIRYWSINNGSCAGVFKC--- 681 (768)
Q Consensus 620 tIrVWDl~t~--~~~~~~~~~------h~~~V~slafs---p~----g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~--- 681 (768)
.|.+||+.+. +. ++.+.- ..+.+..+.+. +. +...+++-.....|.|+|+.+++..+....
T Consensus 124 kLv~~DL~t~~~~l-i~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~ 202 (381)
T 3q6k_A 124 AIVAYDLKQPNYPE-VVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFK 202 (381)
T ss_dssp EEEEEESSSTTCCE-EEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGS
T ss_pred eEEEEECCCCCcee-EEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCc
Confidence 4667777776 43 333221 23467888887 22 334444544578899999998876655421
Q ss_pred ----------------CCCeeEEEEecC----CCEEEEEEcCC
Q 004207 682 ----------------QSGATQMRFQPR----LGRILAAAIEN 704 (768)
Q Consensus 682 ----------------~~~i~sl~fsp~----~~~llags~Dg 704 (768)
..++..++++|+ ++.|+.....+
T Consensus 203 pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss 245 (381)
T 3q6k_A 203 AERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA 245 (381)
T ss_dssp CCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC
T ss_pred cccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC
Confidence 135667777776 56666665444
No 380
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=50.22 E-value=2.6e+02 Score=29.72 Aligned_cols=198 Identities=10% Similarity=-0.002 Sum_probs=103.3
Q ss_pred CCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004207 504 DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC 583 (768)
Q Consensus 504 ~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWd 583 (768)
..+.++++.+.+|.|+.-...+.. .....+++. . ...++. .+.|..+........|+..+..|.++-+.
T Consensus 5 ~~e~~~v~lT~~GyIKr~~l~~y~-------~~~r~g~g~--~-~~~lke-~D~l~~~~~~~t~d~ll~fT~~G~~~~~~ 73 (370)
T 3l6v_A 5 APEDVVVTLSHAGYAKRQPVSAYR-------AQRRGGRGR--S-AASTKE-EDFIDQLWLVNTHDTLLTFTSSGKVFWLP 73 (370)
T ss_dssp CCCCEEEEEESSCEEEEEEHHHHH-------HTCCCCCCS--E-EEECSC-CCCEEEEEEECTTCEEEEEETTSEEEEEE
T ss_pred cCCCEEEEEeCCCEEEEeeHHHhh-------hhccCCCCc--e-ecccCC-CCEEEEEEEecCCCEEEEEeCCCeEEEEE
Confidence 456788889999999875211100 000000111 1 112222 34565565555666777777888876654
Q ss_pred C---CC------CeEEE---EeccCCCCEEEEE-EcC--CCCEEEEEeCCCcEEEEECCCCC------eeEEEeecCCCC
Q 004207 584 T---ES------FTVKS---TLEEHTQWITDVR-FSP--SLSRLATSSADRTVRVWDTENPD------YSLRTFTGHSTT 642 (768)
Q Consensus 584 l---~t------~~~~~---tl~~h~~~V~sl~-fsp--dg~~LaTgs~DgtIrVWDl~t~~------~~~~~~~~h~~~ 642 (768)
. .. |..+. .+. ....|.++. +.. +..+|+.++..|.++...+..-. .....+.. ...
T Consensus 74 ~~eip~~~r~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~-~d~ 151 (370)
T 3l6v_A 74 VHQLPEAGSNARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDE-GDA 151 (370)
T ss_dssp GGGSCBCCTTSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCT-TCC
T ss_pred HHHCcCCCcccCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCC-CCE
Confidence 3 21 22221 122 234455554 332 35689999999999998864311 11112222 344
Q ss_pred eEEEEEeCCCCeEEEEEeCCCcEEEEECCC-------CeeEEE--EecCCCeeEEEEec---------------------
Q 004207 643 VMSLDFHPSKEDLLCSCDNNSEIRYWSINN-------GSCAGV--FKCQSGATQMRFQP--------------------- 692 (768)
Q Consensus 643 V~slafsp~g~~lLaSgs~Dg~I~iWDl~s-------g~~i~~--~~~~~~i~sl~fsp--------------------- 692 (768)
+..+........++ ..+.+|.+..|+... ..-+.. +.....|.++...+
T Consensus 152 lv~v~~~~~~~~i~-l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~ 230 (370)
T 3l6v_A 152 LVGVALTDGDRDVL-LFASNGKTVRFGESTVRSMGRTATGVRGIRLAKGEEVVSLIVSERAGGVEDEVEDESAEEVVETT 230 (370)
T ss_dssp EEEEEEECSCCEEE-EEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEECCC-------------------
T ss_pred EEEEEEeCCCceEE-EEeCCCeEEEEEccccCccCCCCCCeeeEEeCCCCEEEEEEEecccccccccccccccccccccc
Confidence 55555444434444 455577777776532 111222 22234455555443
Q ss_pred --------------CCCEEEEEEcCCeEEEEECCCce
Q 004207 693 --------------RLGRILAAAIENYISILDVETQV 715 (768)
Q Consensus 693 --------------~~~~llags~Dg~I~IwD~~t~~ 715 (768)
.+..+++.+..|..+...+....
T Consensus 231 ~g~~~~~~~~~~~~~~~~il~vTe~G~gKrt~~~e~~ 267 (370)
T 3l6v_A 231 DGAEPAVIDVADNGDVAYILTATENGYGKRTPLAEYP 267 (370)
T ss_dssp ----------------CEEEEEETTSEEEEEEGGGSC
T ss_pred ccccccccccccccCCceEEEeeCCCCEEEEEHHHhc
Confidence 34578888888888877765543
No 381
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=50.16 E-value=2.1e+02 Score=33.26 Aligned_cols=104 Identities=12% Similarity=0.086 Sum_probs=55.0
Q ss_pred CCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCeEEEEeccC-------CCCEEEEEEcC-CCCEEEEEeCC-------C
Q 004207 556 SKVESCHFSPDG-KLLATGGHDKKAVLWCTESFTVKSTLEEH-------TQWITDVRFSP-SLSRLATSSAD-------R 619 (768)
Q Consensus 556 ~~I~sl~fSpdg-~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h-------~~~V~sl~fsp-dg~~LaTgs~D-------g 619 (768)
+.|.+|+++|.. ..|+++...+.|..++- .++.-..+..+ ...|.+|+++| +...++.+... +
T Consensus 23 g~i~~i~~~p~~~~~~~~~~~~ggv~rS~D-~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~ 101 (737)
T 2cn3_A 23 GFMPGIVFNETEKDLIYARAAIGGAYRWDP-STETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLPN 101 (737)
T ss_dssp SCCCEEEECSSSTTCEEEECSSSCEEEEET-TTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSCC
T ss_pred ceeeEEEECCCCCCEEEEEecCCcEEEeCC-CCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEecccccccccC
Confidence 379999999963 45666665666666542 23332223221 23599999998 33444444321 1
Q ss_pred cEEEEECCCCCeeEEEe-ecC--------CCCeEEEEEeCCCCeEEEEEe
Q 004207 620 TVRVWDTENPDYSLRTF-TGH--------STTVMSLDFHPSKEDLLCSCD 660 (768)
Q Consensus 620 tIrVWDl~t~~~~~~~~-~~h--------~~~V~slafsp~g~~lLaSgs 660 (768)
...||.-..+...-... ... ...+.+|+++|....+++.+.
T Consensus 102 ~~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~ 151 (737)
T 2cn3_A 102 MGAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGT 151 (737)
T ss_dssp CCEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEEC
T ss_pred CccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEee
Confidence 24566544332211111 111 112467999987654555555
No 382
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=42.60 E-value=3.3e+02 Score=30.96 Aligned_cols=61 Identities=11% Similarity=0.151 Sum_probs=42.7
Q ss_pred CCeEEEEEeCCCCeEEEEEeC-----------CCcEEEEECCCCeeEEEEec--CCCeeEEEEecCCCEEEEEE
Q 004207 641 TTVMSLDFHPSKEDLLCSCDN-----------NSEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGRILAAA 701 (768)
Q Consensus 641 ~~V~slafsp~g~~lLaSgs~-----------Dg~I~iWDl~sg~~i~~~~~--~~~i~sl~fsp~~~~llags 701 (768)
.....|+|+++|..+|++-.. ...|..++..++++...+.. ...++.++|+|++..|+++-
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 345679999998755544221 12577777777887666654 34589999999999888765
No 383
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=41.91 E-value=30 Score=42.94 Aligned_cols=39 Identities=18% Similarity=0.066 Sum_probs=33.3
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEec
Q 004207 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE 594 (768)
Q Consensus 556 ~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~ 594 (768)
..|.+++..++..++++-+.|++++||++.++.++.+..
T Consensus 238 ~~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 238 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp TCBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred ceeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 356677777888999999999999999999999987753
No 384
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=41.61 E-value=3.4e+02 Score=31.83 Aligned_cols=61 Identities=16% Similarity=0.201 Sum_probs=36.6
Q ss_pred CCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCeeEEEeecC-------CCCeEEEEEeCCCCeEEEEE
Q 004207 597 TQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFTGH-------STTVMSLDFHPSKEDLLCSC 659 (768)
Q Consensus 597 ~~~V~sl~fspd-g~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h-------~~~V~slafsp~g~~lLaSg 659 (768)
...|.+|+++|. ...++.+...+.|...+-. ++. -..+..+ ...|.+|+++|.....++++
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~Dg-G~t-W~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~ 82 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWDAG-TSK-WIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLA 82 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEETT-TTE-EEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEE
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEecCC-CCC-eeECccCCCcccccCCceeEEEECCCCCCEEEEE
Confidence 468999999995 4567777777766555432 221 1222221 24699999998644444343
No 385
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=40.32 E-value=2.1e+02 Score=35.18 Aligned_cols=39 Identities=13% Similarity=0.322 Sum_probs=29.8
Q ss_pred CeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec
Q 004207 642 TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC 681 (768)
Q Consensus 642 ~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~ 681 (768)
.+.+++..++.. ++++-+.|+++|+|++.++.|+.+...
T Consensus 239 ~~vs~~~~~~~~-~lftL~~D~~LRiWsl~t~~~v~t~DL 277 (1139)
T 4fhn_B 239 TIISMIFLSTYN-VLVMLSLDYKLKVLDLSTNQCVETIEL 277 (1139)
T ss_dssp CBSCCEEETTTT-EEEEEBTTCEEEEEETTTTEEEEEEEC
T ss_pred eeEEeeccCCcc-EEEEEeCCCEEEEEECCCCCeEEeech
Confidence 345556666655 555777899999999999999988764
No 386
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=38.81 E-value=79 Score=36.11 Aligned_cols=58 Identities=16% Similarity=0.175 Sum_probs=41.5
Q ss_pred eEEEEEcCCCCEEEEEeCC------------CcEEEEECCCCeEEEEeccC-CCCEEEEEEcCCCCEEEEE
Q 004207 558 VESCHFSPDGKLLATGGHD------------KKAVLWCTESFTVKSTLEEH-TQWITDVRFSPSLSRLATS 615 (768)
Q Consensus 558 I~sl~fSpdg~~LaSgs~D------------g~I~VWdl~t~~~~~tl~~h-~~~V~sl~fspdg~~LaTg 615 (768)
.--|+|++.|+++++-..+ ..+.+.+..++++...+.++ ...++.++|+||++.|++.
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 4568999999966654322 23556677777777666554 3579999999999887775
No 387
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=38.41 E-value=2e+02 Score=28.76 Aligned_cols=145 Identities=12% Similarity=0.050 Sum_probs=70.7
Q ss_pred EEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEE---CCC----CeeE---EEEe
Q 004207 611 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS---INN----GSCA---GVFK 680 (768)
Q Consensus 611 ~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWD---l~s----g~~i---~~~~ 680 (768)
.+++.+.+|.|+--...........+... ..+..+........++ ..+..|.++-+. +.. |..+ -.+.
T Consensus 4 v~v~lT~~G~iKr~~~~~~~~~~~~lke~-D~l~~~~~~~t~~~ll-~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L~ 81 (256)
T 1zvt_A 4 VTIVLSQMGWVRSAKGHDIDAPGLNYKAG-DSFKAAVKGKSNQPVV-FVDSTGRSYAIDPITLPSARGQGEPLTGKLTLP 81 (256)
T ss_dssp EEEEEETTSEEEEEESSCCCSTTSCCCTT-CCEEEEEEEETTSCEE-EEETTSEEEEECGGGSCCSSSCCEEGGGTCCCC
T ss_pred EEEEEeCCCEEEEeeCCcCCceeccCCCC-CEEEEEEEeCCCCEEE-EEeCCCeEEEEEHHHCCCcCCCCeEeeeeecCC
Confidence 45666777777665543311101112222 3344443333333444 344567765554 422 2211 1122
Q ss_pred cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEe-CCCCEEEEEE
Q 004207 681 CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAAS-TVNGMVASAS 759 (768)
Q Consensus 681 ~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~s-pdg~~LaSgs 759 (768)
....|..+....++.+++.++..|.++...+........- .+.+. .+... +.+..+... .++..|+..+
T Consensus 82 ~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~r~-G~~~i--------~L~~~-d~lv~~~~~~~~~~~i~l~T 151 (256)
T 1zvt_A 82 PGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRA-GKALI--------TLPEN-AHVMPPVVIEDASDMLLAIT 151 (256)
T ss_dssp TTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTT-CEECB--------CCCTT-CCBCCCEECCCTTCEEEEEE
T ss_pred CCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccCcC-ceEEE--------EECCC-CEEEEEEEecCCCCEEEEEc
Confidence 2445666644345667889999999998887654221111 11111 22222 234444444 3455777888
Q ss_pred CCCcEEEe
Q 004207 760 HDKCVKIW 767 (768)
Q Consensus 760 ~DG~V~IW 767 (768)
.+|.+..|
T Consensus 152 ~~G~~lrf 159 (256)
T 1zvt_A 152 QAGRMLMF 159 (256)
T ss_dssp TTSEEEEE
T ss_pred CCCeEEEE
Confidence 88876654
No 388
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=36.06 E-value=4.5e+02 Score=28.43 Aligned_cols=108 Identities=7% Similarity=0.007 Sum_probs=56.2
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECC---CC-------C--e--eEEEeec-CCCCeEEEEEeCCCCeEEEEEeCC
Q 004207 598 QWITDVRFSPSLSRLATSSADRTVRVWDTE---NP-------D--Y--SLRTFTG-HSTTVMSLDFHPSKEDLLCSCDNN 662 (768)
Q Consensus 598 ~~V~sl~fspdg~~LaTgs~DgtIrVWDl~---t~-------~--~--~~~~~~~-h~~~V~slafsp~g~~lLaSgs~D 662 (768)
..|..|+.. ..+.+....||.|+.|-.. .+ . . ....+.. ....|..|+.-.. ..+.-..+
T Consensus 148 ~~i~~va~G--~~hs~alt~~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G~~---hs~alt~~ 222 (473)
T 3of7_A 148 HKVVQLAAT--DNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKD---HILFLDEE 222 (473)
T ss_dssp CCEEEEEEC--SSEEEEEETTSCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEECSS---EEEEEETT
T ss_pred CcEEEEEcc--CCEEEEEeCCCeEEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEecCC---eEEEEeCC
Confidence 456666654 3455566789999999751 00 0 0 0011111 1224766765432 33345568
Q ss_pred CcEEEEECCC-Cee-------------EEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECC
Q 004207 663 SEIRYWSINN-GSC-------------AGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVE 712 (768)
Q Consensus 663 g~I~iWDl~s-g~~-------------i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~ 712 (768)
|.|+.|-... +.+ .........|..|+.- ....++...+|.|+.|-..
T Consensus 223 G~v~~wG~n~~GqLG~~~~~~~~~~~~~p~~~~~~~v~~Ia~G--~~hs~alt~~G~v~~wG~n 284 (473)
T 3of7_A 223 GMVFAWGNGQQNQLGRKVMERFRLKTLDPRPFGLRHVKYIASG--ENHCFALTKDNKLVSWGLN 284 (473)
T ss_dssp SCEEEEECCTTSTTSSCCCGGGTTTTCSCEECSCCSEEEEEEC--SSEEEEEETTSCEEEEEEC
T ss_pred CeEEEEeCCCCCCCCCCccccccccccCceecCCcceEEEecC--CCeEEEEecCCCEEEeCCC
Confidence 9999996542 110 0000011345555443 3456677788888888654
No 389
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=35.99 E-value=1.2e+02 Score=34.56 Aligned_cols=60 Identities=13% Similarity=0.146 Sum_probs=42.7
Q ss_pred CeEEEEEcCCCCEEEEEeC------------CCcEEEEECCCCeEEEEeccC-CCCEEEEEEcCCCCEEEEEe
Q 004207 557 KVESCHFSPDGKLLATGGH------------DKKAVLWCTESFTVKSTLEEH-TQWITDVRFSPSLSRLATSS 616 (768)
Q Consensus 557 ~I~sl~fSpdg~~LaSgs~------------Dg~I~VWdl~t~~~~~tl~~h-~~~V~sl~fspdg~~LaTgs 616 (768)
....|.|.++|.+.++... ...|..++..++++...+.+. ...++.++|+||++.|+++-
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 4677999999987774321 125666777778777666543 35689999999999887763
No 390
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=35.71 E-value=4.2e+02 Score=27.97 Aligned_cols=149 Identities=7% Similarity=0.108 Sum_probs=76.2
Q ss_pred CCeEEEEEcCCCCEEEEEeCC-CcEEEEECCCC---------eE--EEEecc-CCCCEEEEEEcCCCCEEEEEeCCCcEE
Q 004207 556 SKVESCHFSPDGKLLATGGHD-KKAVLWCTESF---------TV--KSTLEE-HTQWITDVRFSPSLSRLATSSADRTVR 622 (768)
Q Consensus 556 ~~I~sl~fSpdg~~LaSgs~D-g~I~VWdl~t~---------~~--~~tl~~-h~~~V~sl~fspdg~~LaTgs~DgtIr 622 (768)
..|..|+.. ..+.+.-..| +.|+.|-.... .. ...+.. ....|..|+-- ..+.+....||.|+
T Consensus 68 ~~i~~va~G--~~ht~al~~~gg~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G--~~h~~alt~~G~v~ 143 (406)
T 4d9s_A 68 HQIVSVTCG--ADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACG--DSHCLAVTMEGEVQ 143 (406)
T ss_dssp SCEEEEEEC--SSEEEEEETTTTEEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEEC--SSEEEEEETTSCEE
T ss_pred CCEEEEEeC--cceEEEEECCCCEEEEEcCCCCcCCCCCCCCccccceEecccCCCCEEEEEEC--hhheEEEcCCCcEE
Confidence 357777764 3333333444 58999953221 11 111111 22357776654 34566667899999
Q ss_pred EEECCCCC---------e-eEEEeec-CCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCC-C---------eeE-EEEe
Q 004207 623 VWDTENPD---------Y-SLRTFTG-HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-G---------SCA-GVFK 680 (768)
Q Consensus 623 VWDl~t~~---------~-~~~~~~~-h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~s-g---------~~i-~~~~ 680 (768)
.|-..... . ....+.. ....|..|+.-.. ..+.-..||.|+.|-... + ... ..+.
T Consensus 144 ~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~i~~va~G~~---hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~ 220 (406)
T 4d9s_A 144 SWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAE---HTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVT 220 (406)
T ss_dssp EEECCTTSTTCSSSCCCEEEEEECGGGTTCCEEEEEECSS---EEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECC
T ss_pred EeCCCCCccCCCCCCCCcccceEecccCCCcEEEEecCCC---eEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEec
Confidence 99754321 1 0111111 1235666665432 333455789999996432 1 111 1111
Q ss_pred c--CCCeeEEEEecCCCEEEEEEcCCeEEEEECCC
Q 004207 681 C--QSGATQMRFQPRLGRILAAAIENYISILDVET 713 (768)
Q Consensus 681 ~--~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t 713 (768)
. ...|..++.-. .+.++...++.|+.|-...
T Consensus 221 ~~~~~~i~~va~G~--~ht~~l~~~G~v~~wG~n~ 253 (406)
T 4d9s_A 221 STGGEKMSMVACGW--RHTISVSYSGALYTYGWSK 253 (406)
T ss_dssp CSTTCCEEEEEECS--SEEEEEETTCCEEEEECCT
T ss_pred ccCCceEEEEEECC--CcEEEEcCCCCEEEeeCCC
Confidence 1 23455555443 4566777888888886543
No 391
>1qb3_A Cyclin-dependent kinases regulatory subunit; cell cycle mutagenesis domain swapping, cyclin-dependent KIN cycle; 3.00A {Saccharomyces cerevisiae} SCOP: d.97.1.1
Probab=34.56 E-value=9.5 Score=34.96 Aligned_cols=11 Identities=27% Similarity=0.193 Sum_probs=4.7
Q ss_pred hHHHHHHHHHh
Q 004207 25 LHASAKAFQTE 35 (768)
Q Consensus 25 ~~~~A~~~~~e 35 (768)
+.|.-|+-+.|
T Consensus 13 l~d~er~~l~~ 23 (150)
T 1qb3_A 13 LTDQERARVLE 23 (150)
T ss_dssp CCHHHHHHHGG
T ss_pred chHHHHHHHHH
Confidence 44444444443
No 392
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=32.68 E-value=4.6e+02 Score=27.60 Aligned_cols=149 Identities=8% Similarity=-0.075 Sum_probs=77.9
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEC--CC-Ce---------EEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q 004207 556 SKVESCHFSPDGKLLATGGHDKKAVLWCT--ES-FT---------VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 623 (768)
Q Consensus 556 ~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl--~t-~~---------~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrV 623 (768)
..|..|+.. ..+.+.-..||.|+.|-. .. +. ...........|..|+.- ..+.+.-..||.|+.
T Consensus 127 ~~i~~va~G--~~hs~al~~~G~v~~wG~~~n~~GqlG~~~~~~~~~p~~~~~~~~i~~va~G--~~hs~alt~~G~v~~ 202 (423)
T 3mvd_K 127 GKALCISAG--DSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASG--ADHLVILTTAGKVFT 202 (423)
T ss_dssp SCEEEEEEC--SSEEEEEETTSCEEEEECEECSSSEEESBTTBCEEEEEESSTTCCEEEEEEC--SSEEEEEETTSCEEE
T ss_pred CCEEEEEcC--cCeEEEEeCCCeEEEEeCCCCCCCCcCcCCCCCCceeeEecCCCcEEEEecC--CCeEEEEecCCeEEE
Confidence 357666653 344455567899999974 22 11 111111223456666654 345666678999999
Q ss_pred EECCCCC----------------------eeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCC--------
Q 004207 624 WDTENPD----------------------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-------- 673 (768)
Q Consensus 624 WDl~t~~----------------------~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg-------- 673 (768)
|-..... .+..........|..|+... ...++.-..++.|+.|-....
T Consensus 203 wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~v~~i~~g~--~~~~~~~~~~g~v~~wG~n~~gqlg~~~~ 280 (423)
T 3mvd_K 203 VGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWATN--YCTFMRESQTQVIWATGLNNFKQLAHETK 280 (423)
T ss_dssp EECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCTTCCCEEEEEEET--TEEEEEETTTCCEEEEEECTTCTTSSCCT
T ss_pred eeCCcCCccCCCcccccccccccccccccCCeEEeecCCccEEEEEECC--cEEEEEECCCCeEEEEeCCCCCcCCCCCC
Confidence 9643211 11111112223466665542 233434357889999964321
Q ss_pred ---eeEEEEe-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECC
Q 004207 674 ---SCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVE 712 (768)
Q Consensus 674 ---~~i~~~~-~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~ 712 (768)
....... ....|..++.-. .+.++...++.|+.|=..
T Consensus 281 ~~~~~~~p~~~~~~~v~~ia~G~--~ht~alt~~G~v~~wG~n 321 (423)
T 3mvd_K 281 GKEFALTPIKTELKDIRHIAGGQ--HHTVILTTDLKCSVVGRP 321 (423)
T ss_dssp TCSEEEEEEEECCCSEEEEEECS--SEEEEEETTCCEEEEECC
T ss_pred CCceeeeeEEcCCCCeEEEEccc--CeEEEEeCCCcEEEEECC
Confidence 1111111 123455555433 456677788988888654
No 393
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=32.19 E-value=58 Score=38.07 Aligned_cols=38 Identities=18% Similarity=0.258 Sum_probs=31.0
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecc
Q 004207 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE 595 (768)
Q Consensus 556 ~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~ 595 (768)
..|.|+.+ +..++++-+.|+++|+|++.++.++.+...
T Consensus 222 ~~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 222 SVISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp CEEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred ceEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 34666665 577999999999999999999998877654
No 394
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=31.55 E-value=1.1e+02 Score=34.87 Aligned_cols=59 Identities=15% Similarity=0.235 Sum_probs=39.4
Q ss_pred EEEEEEcCCCCEEEEEeCC------------CcEEEEECCCCCeeEEEeec-CCCCeEEEEEeCCCCeEEEEE
Q 004207 600 ITDVRFSPSLSRLATSSAD------------RTVRVWDTENPDYSLRTFTG-HSTTVMSLDFHPSKEDLLCSC 659 (768)
Q Consensus 600 V~sl~fspdg~~LaTgs~D------------gtIrVWDl~t~~~~~~~~~~-h~~~V~slafsp~g~~lLaSg 659 (768)
.-.|+|+|.|++++.-..+ ..+.+.+..+++. .+.+.+ ....++.++|+|+++.+|+..
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~-~rf~~~P~gaE~TG~~fspDg~tlfvni 549 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEI-RRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCE-EEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeE-EEEEeCCCCccCcCeeECCCCCEEEEEE
Confidence 4678999999866554322 2355556666654 344444 356799999999998887653
No 395
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=27.27 E-value=7.9e+02 Score=28.58 Aligned_cols=37 Identities=14% Similarity=0.309 Sum_probs=28.1
Q ss_pred CeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec
Q 004207 642 TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC 681 (768)
Q Consensus 642 ~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~ 681 (768)
.|.++.+. .. ++++-+.|+++|+||++++.++.+...
T Consensus 223 ~Is~~~~~--~~-fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLFH--ER-YLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEET--TT-EEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEeccC--Cc-EEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 35555543 33 556778899999999999999988775
No 396
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=26.56 E-value=4.8e+02 Score=25.86 Aligned_cols=143 Identities=8% Similarity=-0.049 Sum_probs=75.2
Q ss_pred EEEEEeCCCcEEEEECCCCeE-EEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC---C---CeeE---EEeec
Q 004207 569 LLATGGHDKKAVLWCTESFTV-KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN---P---DYSL---RTFTG 638 (768)
Q Consensus 569 ~LaSgs~Dg~I~VWdl~t~~~-~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t---~---~~~~---~~~~~ 638 (768)
.+++.+.+|.|+--....... ...++.. +.+..+........|+..+..|.++-+.... . ...+ ..+.
T Consensus 4 v~v~lT~~G~iKr~~~~~~~~~~~~lke~-D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L~- 81 (256)
T 1zvt_A 4 VTIVLSQMGWVRSAKGHDIDAPGLNYKAG-DSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLP- 81 (256)
T ss_dssp EEEEEETTSEEEEEESSCCCSTTSCCCTT-CCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTCCCC-
T ss_pred EEEEEeCCCEEEEeeCCcCCceeccCCCC-CEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeeeeecCC-
Confidence 345556666666544332110 0112333 3344443333344566667788765554321 1 1111 0122
Q ss_pred CCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCC-------CeeEEEEecCCCeeEEEEe-cCCCEEEEEEcCCeEEEEE
Q 004207 639 HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-------GSCAGVFKCQSGATQMRFQ-PRLGRILAAAIENYISILD 710 (768)
Q Consensus 639 h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~s-------g~~i~~~~~~~~i~sl~fs-p~~~~llags~Dg~I~IwD 710 (768)
....|.++....++.. |+.++..|.++...+.. +.....++....+..+... .....++..+.+|.+..|+
T Consensus 82 ~~e~Iv~~~~~~~~~~-lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~~~d~lv~~~~~~~~~~~i~l~T~~G~~lrf~ 160 (256)
T 1zvt_A 82 PGATVDHMLMESDDQK-LLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFP 160 (256)
T ss_dssp TTCCEEEEECCCTTCE-EEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCTTCCBCCCEECCCTTCEEEEEETTSEEEEEE
T ss_pred CCCEEEEEEEeCCCCE-EEEEeCCCeEEEeEHHHhcccCcCceEEEEECCCCEEEEEEEecCCCCEEEEEcCCCeEEEEE
Confidence 2345666644333343 44678899999987742 2333333334455555554 3456799999999998888
Q ss_pred CCCc
Q 004207 711 VETQ 714 (768)
Q Consensus 711 ~~t~ 714 (768)
...-
T Consensus 161 ~~ei 164 (256)
T 1zvt_A 161 VSDL 164 (256)
T ss_dssp GGGS
T ss_pred HHHC
Confidence 8653
No 397
>3hx6_A Type 4 fimbrial biogenesis protein PILY1; beta propeller, pilus protein, cell adhesion; 2.10A {Pseudomonas aeruginosa}
Probab=26.50 E-value=7.3e+02 Score=27.94 Aligned_cols=147 Identities=12% Similarity=0.104 Sum_probs=82.6
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEec-------------------cCC-----CC-EEEEEEcCCCCEEEEEeC---CC
Q 004207 568 KLLATGGHDKKAVLWCTESFTVKSTLE-------------------EHT-----QW-ITDVRFSPSLSRLATSSA---DR 619 (768)
Q Consensus 568 ~~LaSgs~Dg~I~VWdl~t~~~~~tl~-------------------~h~-----~~-V~sl~fspdg~~LaTgs~---Dg 619 (768)
..|++|+.||.++.+|.. ++.+..+. .|. .+ +..+.+...-+.++.++. ..
T Consensus 86 ~~VyvGaNDGmLHaF~a~-G~E~wAfiP~~~l~~L~~l~~~~y~~~~h~Y~VDG~p~~~Dv~~~g~wrtvLvggmg~GG~ 164 (570)
T 3hx6_A 86 PRVYVGANDGMLHGFDTD-GNETFAFIPSAVFEKMHKLTARGYQGGAHQFYVDGSPVVADAFFGGAWHTVLIGSLRAGGK 164 (570)
T ss_dssp CEEEEECSSSCEEECCSS-CCCCEEECCHHHHHHCC-------CCHHHHHHHHCCCEEEEEEETTEEEEEEEEECTTSCS
T ss_pred cEEEEECCCceEEEECCC-CcEEEEECCHHHHHHHHHHhccCccccCcceecCCCCEEEEEEeCCcceEEEEEecCCCCc
Confidence 578889999999999876 54443321 021 11 233333221123344332 22
Q ss_pred cEEEEECCCCCee--EEEee-------cCCCCeEEEEEeCCCCeEEEEEeC------CCcEEEEECCCCeeEEEEecC--
Q 004207 620 TVRVWDTENPDYS--LRTFT-------GHSTTVMSLDFHPSKEDLLCSCDN------NSEIRYWSINNGSCAGVFKCQ-- 682 (768)
Q Consensus 620 tIrVWDl~t~~~~--~~~~~-------~h~~~V~slafsp~g~~lLaSgs~------Dg~I~iWDl~sg~~i~~~~~~-- 682 (768)
.++..|+.++..+ +-.+. ++.-.-..|.-..+++.+++.++. ...|+|+|+.+|..++.+...
T Consensus 165 ~~yALDVT~P~~p~~LWe~~~~~~~~LG~t~s~P~I~~~~~g~w~~vfG~GY~~~~~~~~Lyv~d~~tG~li~~i~~~~~ 244 (570)
T 3hx6_A 165 GLFALDVTDPANIKLLWEIGVDQEPDLGYSFPKPTVARLHNGKWAVVTGNGYSSMNDKAALLIIDMETGAITRKLEVTGR 244 (570)
T ss_dssp EEEEEECSSGGGCEEEEEEETTTCTTCCBCCSCCEEEECTTSSEEEEEECCBSCTTCCEEEEEEETTTCCEEEEEEECCS
T ss_pred EEEEEECCCCCCCceeEEECCCCccccCccccCCEEEEecCCCEEEEEccccCCCCCccEEEEEECCCCceEEEEecCCC
Confidence 5666676653321 22222 111111223334466766666652 357999999999999888653
Q ss_pred ----CCeeEEEE-ecCC----CEEEEEEcCCeEEEEECCCce
Q 004207 683 ----SGATQMRF-QPRL----GRILAAAIENYISILDVETQV 715 (768)
Q Consensus 683 ----~~i~sl~f-sp~~----~~llags~Dg~I~IwD~~t~~ 715 (768)
..+..+.. ..++ .+++++...|.|.-||+....
T Consensus 245 ~~~~~Gls~~~~~D~d~Dg~~D~~YaGDl~GnlWRfDl~~~~ 286 (570)
T 3hx6_A 245 TGVPNGLSSPRLADNNSDGVADYAYAGDLQGNLWRFDLIAGK 286 (570)
T ss_dssp TTSCCCEEEEEEECTTSSSBCCEEEEEETTSEEEEEECSCSS
T ss_pred CccCCccccceEEecCCCCceeEEEEEeCCCcEEEEEcCCCC
Confidence 22334433 3332 468999999999999997754
No 398
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=25.08 E-value=8.4e+02 Score=28.16 Aligned_cols=149 Identities=11% Similarity=0.099 Sum_probs=72.5
Q ss_pred CCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCeEEEEecc------------CCCCEEEEEEcCC-CCEEEEEeCC-
Q 004207 554 STSKVESCHFSPDG-KLLATGGHDKKAVLWCTESFTVKSTLEE------------HTQWITDVRFSPS-LSRLATSSAD- 618 (768)
Q Consensus 554 H~~~I~sl~fSpdg-~~LaSgs~Dg~I~VWdl~t~~~~~tl~~------------h~~~V~sl~fspd-g~~LaTgs~D- 618 (768)
-.+.|.+|.++|.+ ..++++...|.|...+ +.++.-..+.. ....|.+|+++|. ...++.+...
T Consensus 19 ~~g~i~~i~~~p~~~~~~y~~~~~ggv~~S~-DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~ia~dp~~~~~~~~~~g~~ 97 (763)
T 3a0f_A 19 GGGFISGLVAHPTEKDLIYARTDIGGTYRWN-AAKWEWEPITDFIINNALAGNGANLLGTESIALDPHNPDRLYLAQGDY 97 (763)
T ss_dssp BCSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCBTTCSSSCCCCCCSEEEEECCTTCTTCEEEEECSC
T ss_pred CCCceeEEEeCCCCCCEEEEEeccCcEEEEC-CCCCCeeECccCccccccCCCcccccceeEEEECCCCCCEEEEEeccc
Confidence 45689999999965 5666666666655443 23332222211 1235899999983 3444443321
Q ss_pred ----CcEEEEECCCCCeeEEEee-cC------CC--CeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec----
Q 004207 619 ----RTVRVWDTENPDYSLRTFT-GH------ST--TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC---- 681 (768)
Q Consensus 619 ----gtIrVWDl~t~~~~~~~~~-~h------~~--~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~---- 681 (768)
....||.-..+...-.... .. .+ .+..|+++|.....++++..++.|. .....|+.-..+..
T Consensus 98 ~~~~~~~~i~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~v~p~~~~~v~a~~~~~~l~-~S~DgG~TW~~~~~~~~~ 176 (763)
T 3a0f_A 98 VQWDPWAAFLVSDDRGKTFKQYRSPVPMGANDMGRNGGERLAVNPHWTDELWFGSRTQGLW-RSTDRAQTWSRMNQLPDS 176 (763)
T ss_dssp TTTCSCCEEEEESSTTSSCEEEECSSCCCTTSTTTTSBCCEEECTTSTTCEEEECSSSCEE-EESSTTSSCEECTTSCCC
T ss_pred ccCCCCceEEEECCCCCCceeccCCcccCccccCccccceEEECCCCCCEEEEEeCCCcEE-EECCCCcCccccccCccc
Confidence 1234554333221111111 10 11 1246888886543444454443332 22222322111111
Q ss_pred ---CCCeeEEEEecCC-CEEEEEEcCC
Q 004207 682 ---QSGATQMRFQPRL-GRILAAAIEN 704 (768)
Q Consensus 682 ---~~~i~sl~fsp~~-~~llags~Dg 704 (768)
...+..++++|.. ..++++..++
T Consensus 177 ~~~~~~~~~i~~~p~~~~~~~~~~~~~ 203 (763)
T 3a0f_A 177 STYGIGIISVIFDPKNVGTAYVASHAV 203 (763)
T ss_dssp SCTTTCEEEEEECSSSTTCEEEEESST
T ss_pred CCCccceEEEEECCCCCCEEEEEEeCC
Confidence 1346778888754 3566666654
No 399
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=23.75 E-value=8.3e+02 Score=27.60 Aligned_cols=45 Identities=11% Similarity=0.195 Sum_probs=30.8
Q ss_pred ecCCCCeEEEEEeCCCC-eEEEEEeCCC----cEEEEECCCCeeEEEEec
Q 004207 637 TGHSTTVMSLDFHPSKE-DLLCSCDNNS----EIRYWSINNGSCAGVFKC 681 (768)
Q Consensus 637 ~~h~~~V~slafsp~g~-~lLaSgs~Dg----~I~iWDl~sg~~i~~~~~ 681 (768)
.+|...+....|.|+.. .-++.|.+++ -..+.|.++|+.+.....
T Consensus 360 ~gHGDa~hv~dldP~r~GlEv~~~~E~~~~~~G~~~~dA~tG~vlw~~~~ 409 (591)
T 2zux_A 360 LGHGDALHTGDLDPGRPGLEVFQVHEDKNAKYGLSFRDAATGKILWGVYA 409 (591)
T ss_dssp CCCCSCEEEECCCTTSSSCEEEEECCCTTSSCSEEEEETTTCCEEEEECC
T ss_pred CCCCCeeEEeecCCCCCCcEEEEEecCCCCCCccEEEECCCCcEEEEcCC
Confidence 37888888888998853 2233555441 455689999999887754
No 400
>2d68_A FOP, FGFR1OP; alpha helical bundle, dimer, cell cycle; 1.60A {Homo sapiens}
Probab=23.14 E-value=73 Score=26.42 Aligned_cols=31 Identities=16% Similarity=0.258 Sum_probs=28.3
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHhcCCCC
Q 004207 10 KMLDVYIYDYLLKRKLHASAKAFQTEGKVST 40 (768)
Q Consensus 10 ~~L~~yiydyl~k~~~~~~A~~~~~e~~~~~ 40 (768)
.+++.-|-|||.=.+|.=|...|.-|++++.
T Consensus 19 rLi~~LVrEyLef~~l~~TlsVf~pEs~l~~ 49 (82)
T 2d68_A 19 RLVASLVAEFLQFFNLDFTLAVFQPETSTLQ 49 (82)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHHHcCCcchHHhhhhccCCCC
Confidence 4789999999999999999999999999874
No 401
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=21.29 E-value=9.2e+02 Score=27.22 Aligned_cols=41 Identities=15% Similarity=0.078 Sum_probs=28.9
Q ss_pred CCCCeEEEEEcCCCC-EEEEEeCCCc----------------------------EEEEECCCCeEEEEec
Q 004207 554 STSKVESCHFSPDGK-LLATGGHDKK----------------------------AVLWCTESFTVKSTLE 594 (768)
Q Consensus 554 H~~~I~sl~fSpdg~-~LaSgs~Dg~----------------------------I~VWdl~t~~~~~tl~ 594 (768)
|-..+....|.-||+ -|++...+|+ |.|+|-.+++.+.++.
T Consensus 177 ~yt~~~V~DlDGDGkaEIvv~TadGt~dg~g~~ig~~~~dyrn~~g~il~GpEyL~vfdG~TG~~l~~~~ 246 (591)
T 2zux_A 177 HYTQFMVYDLDGDGKAEVAMKTADGTKDGTGKVIGNANADYRNEQGRVLSGPEYLTVFQGSTGKELVTAN 246 (591)
T ss_dssp TSCCCEEECSSSSSSCEEEEEECTTCBCTTSCBCSSTTCCCBCTTSCBCSSCCEEEEEETTTCCEEEEEE
T ss_pred ccCceeEEEcCCCCcceEEEEccCCcccCCceEecccccccccccceeecCCcEEEEEeCCCCCEEeccc
Confidence 555677777877886 3666666665 7888888888776653
No 402
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=20.89 E-value=9.8e+02 Score=27.40 Aligned_cols=62 Identities=11% Similarity=0.159 Sum_probs=31.8
Q ss_pred eEEEEEeCCCCeEEEEEeCCCcEEEE-ECCC----CeeEEEEec----CCCeeEEEEecCCCEEEEEEcCCe
Q 004207 643 VMSLDFHPSKEDLLCSCDNNSEIRYW-SINN----GSCAGVFKC----QSGATQMRFQPRLGRILAAAIENY 705 (768)
Q Consensus 643 V~slafsp~g~~lLaSgs~Dg~I~iW-Dl~s----g~~i~~~~~----~~~i~sl~fsp~~~~llags~Dg~ 705 (768)
+.+|+++|.....++.+. ++.|..- |..+ +.....+.. ...+..+...|.+..|+++..|..
T Consensus 385 ~~~l~idp~~~~~~~~g~-~~g~~~s~d~g~w~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~l~~~~~d~g 455 (737)
T 2cn3_A 385 IGDIEIDPFNSDRMMYVT-GATIYGCDNLTDWDRGGKVKIEVKATGIEECAVLDLVSPPEGAPLVSAVGDLV 455 (737)
T ss_dssp CCCEEECTTCTTCEEEEC-SSCEEEESCGGGGGGTCCEEEEECCTTCBCCBEEEEECCSSSCSEEEEETTTB
T ss_pred cccEEECCCCCCcEEEeC-CCeEEeecCCCccccCCceeEEEcCCCceeeeeeeEEcCCCCCeeEEEEeccC
Confidence 567899987655554554 5555431 2210 111111111 122445566777777888876653
Done!