BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004208
(768 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human
Mctp2 Protein
Length = 133
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 55/97 (56%), Gaps = 7/97 (7%)
Query: 360 IGVLELGILSAKELLPMKSRDGRGTTDAYCVAKYANKWVRTRTVVDSFDPKWNEQYTWEV 419
+G+L++ +L A +LL + D G +D +C+ + N ++T TV + +P+WN+ +T+ +
Sbjct: 12 VGILQVKVLKAADLL---AADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPI 68
Query: 420 YDPYTVITLVVFDNCHLHPGGAKDSRIGKVRIRLSTL 456
D + V+ + VFD G +GKV I L ++
Sbjct: 69 KDIHDVLEVTVFD----EDGDKPPDFLGKVAIPLLSI 101
Score = 53.5 bits (127), Expect = 4e-07, Method: Composition-based stats.
Identities = 33/102 (32%), Positives = 56/102 (54%), Gaps = 8/102 (7%)
Query: 35 VEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGNYKGTTIPFEKKLNPEWNQVFAFTK 94
V+ + L V++++A DL +G DP+ +++GN + T K LNPEWN+VF F
Sbjct: 9 VKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPI 68
Query: 95 ERLQAISVELLVKDKMIVNG----DFIGKIKIDMPDIPKRVP 132
+ + + +E+ V D+ +G DF+GK+ I + I P
Sbjct: 69 KDIHDV-LEVTVFDE---DGDKPPDFLGKVAIPLLSIRDGQP 106
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 202 LRVNVIEAQDLVPKQRNRNPEVFIKAIFGNVVLKTTVSAKKTVNPTWNEDLMFVAAEPFD 261
L+V V++A DL+ + + F GN L+T + K +NP WN+ F +
Sbjct: 15 LQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTH-TVYKNLNPEWNKVFTF-PIKDIH 72
Query: 262 DPLILTVEDKLGDNKEECLGRLVLPL 287
D L +TV D+ GD + LG++ +PL
Sbjct: 73 DVLEVTVFDEDGDKPPDFLGKVAIPL 98
>pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin
pdb|3HN8|B Chain B, Crystal Structure Of Synaptotagmin
pdb|3HN8|C Chain C, Crystal Structure Of Synaptotagmin
Length = 296
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 64/234 (27%), Positives = 92/234 (39%), Gaps = 48/234 (20%)
Query: 41 LYVRIVRARDLQVNQVTGTCDPYVEVKI---GNYKGTTIPFEKKLNPEWNQVFAFTK--E 95
L VRI++A DL G DPYV++ + K T K LNP +N+ F F+
Sbjct: 23 LVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLA 82
Query: 96 RLQAISVELLVKD-KMIVNGDFIGKIKIDMPDIPKRVPPDSPLAPEWKR-LEAKDGSRAR 153
L + V D D IG++ +D PPD PL W+ LE
Sbjct: 83 ELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPL---WRDILEGGSEKADL 139
Query: 154 GELMFAIWFGTQADEAFSSAWHSDTAVVSGENIMNCRSKVYVSPKLWYLRVNVIEAQDLV 213
GEL F++ + P L V +I+A +L
Sbjct: 140 GELNFSLCY---------------------------------LPTAGLLTVTIIKASNLK 166
Query: 214 PKQRNRNPEVFIKAIF---GNVVLKTTVSAKK-TVNPTWNEDLMF-VAAEPFDD 262
+ ++KA G + K S KK T+NPT+NE L+F VA E ++
Sbjct: 167 AMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVEN 220
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 51/113 (45%), Gaps = 8/113 (7%)
Query: 18 GGGRVSGRERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGN-----YK 72
GG + L S + L V I++A +L+ +TG DPYV+ + + K
Sbjct: 132 GGSEKADLGELNFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKK 191
Query: 73 GTTIPFEKKLNPEWNQ--VFAFTKERLQAISVELLVKD-KMIVNGDFIGKIKI 122
T + LNP +N+ VF E ++ + + + V D I + + IG ++
Sbjct: 192 RKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRV 244
>pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B
Length = 296
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 64/234 (27%), Positives = 92/234 (39%), Gaps = 48/234 (20%)
Query: 41 LYVRIVRARDLQVNQVTGTCDPYVEVKI---GNYKGTTIPFEKKLNPEWNQVFAFTK--E 95
L VRI++A DL G DPYV++ + K T K LNP +N+ F F+
Sbjct: 22 LVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLA 81
Query: 96 RLQAISVELLVKD-KMIVNGDFIGKIKIDMPDIPKRVPPDSPLAPEWKR-LEAKDGSRAR 153
L + V D D IG++ +D PPD PL W+ LE
Sbjct: 82 ELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPL---WRDILEGGSEKADL 138
Query: 154 GELMFAIWFGTQADEAFSSAWHSDTAVVSGENIMNCRSKVYVSPKLWYLRVNVIEAQDLV 213
GEL F++ + P L V +I+A +L
Sbjct: 139 GELNFSLCY---------------------------------LPTAGLLTVTIIKASNLK 165
Query: 214 PKQRNRNPEVFIKAIF---GNVVLKTTVSAKK-TVNPTWNEDLMF-VAAEPFDD 262
+ ++KA G + K S KK T+NPT+NE L+F VA E ++
Sbjct: 166 AMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVEN 219
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 51/113 (45%), Gaps = 8/113 (7%)
Query: 18 GGGRVSGRERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGN-----YK 72
GG + L S + L V I++A +L+ +TG DPYV+ + + K
Sbjct: 131 GGSEKADLGELNFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKK 190
Query: 73 GTTIPFEKKLNPEWNQ--VFAFTKERLQAISVELLVKD-KMIVNGDFIGKIKI 122
T + LNP +N+ VF E ++ + + + V D I + + IG ++
Sbjct: 191 RKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRV 243
>pdb|1RH8|A Chain A, Three-Dimensional Structure Of The Calcium-Free Piccolo
C2a- Domain
Length = 142
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 60/126 (47%), Gaps = 32/126 (25%)
Query: 22 VSGRERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKI------------- 68
++G +L ++DL L + I++AR+L G DP+V+V +
Sbjct: 5 ITGEIQLQINYDLGN----LIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNA 60
Query: 69 -GNYKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIV---------NGDFIG 118
YK T +K LNPEWNQ + ++IS+E L+K + V + DF+G
Sbjct: 61 SAEYKRRTKYVQKSLNPEWNQTVIY-----KSISMEQLMKKTLEVTVWDYDRFSSNDFLG 115
Query: 119 KIKIDM 124
++ ID+
Sbjct: 116 EVLIDL 121
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 57/122 (46%), Gaps = 20/122 (16%)
Query: 202 LRVNVIEAQDLVPKQRNRNPEVFIKAIF----GNVVLKTTVSA---------KKTVNPTW 248
L +++++A++LVP+ N + F+K G V++ SA +K++NP W
Sbjct: 20 LIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEW 79
Query: 249 NEDLMFVA---AEPFDDPLILTVEDKLGDNKEECLGRLVLPLSKAGKRFLPLPAAAIWYN 305
N+ +++ + + L +TV D + + LG +++ LS L WY
Sbjct: 80 NQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSH----LDNTPRWYP 135
Query: 306 LE 307
L+
Sbjct: 136 LK 137
>pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain
Length = 510
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 8/102 (7%)
Query: 360 IGVLELGILSAKELLPMKSRDGRGTTDAYCVAKYANKWVRTRTVVDSFDPKWNEQYTWEV 419
IG L + ++ A EL K+ G ++ YC ++ TRT+ D+ +PKWN + +
Sbjct: 386 IGRLMVHVIEATEL---KACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFI 442
Query: 420 YDPYT-VITLVVFDNCHLHPGGAKDSRIGKVRIRLSTLETDR 460
D Y V+ L +FD P D +G+ I ++ + T++
Sbjct: 443 KDLYQDVLCLTLFDRDQFSP----DDFLGRTEIPVAKIRTEQ 480
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 1/99 (1%)
Query: 41 LYVRIVRARDLQVNQVTGTCDPYVEVKIGNYKGTTIPFEKKLNPEWN-QVFAFTKERLQA 99
L V ++ A +L+ + G +PY E+ +G+ TT + LNP+WN F K+ Q
Sbjct: 389 LMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDLYQD 448
Query: 100 ISVELLVKDKMIVNGDFIGKIKIDMPDIPKRVPPDSPLA 138
+ L DF+G+ +I + I P+
Sbjct: 449 VLCLTLFDRDQFSPDDFLGRTEIPVAKIRTEQESKGPMT 487
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 3/119 (2%)
Query: 171 SSAWHSDTAVVSGENIMNCRSKVYVSPKLWYLRVNVIEAQDLVPKQRNRNPEVFIKAIFG 230
+S + DT E RS+ + + L V+VIEA +L + N + + G
Sbjct: 360 ASEQYIDTEKKQREKAYQARSQK--TSGIGRLMVHVIEATELKACKPNGKSNPYCEISMG 417
Query: 231 NVVLKTTVSAKKTVNPTWNEDLMFVAAEPFDDPLILTVEDKLGDNKEECLGRLVLPLSK 289
+ TT + + T+NP WN + F + + D L LT+ D+ + ++ LGR +P++K
Sbjct: 418 SQSY-TTRTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQFSPDDFLGRTEIPVAK 475
>pdb|3N5A|A Chain A, Synaptotagmin-7, C2b-Domain, Calcium Bound
Length = 138
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 64/124 (51%), Gaps = 21/124 (16%)
Query: 41 LYVRIVRARDLQVNQVTGTCDPYVEVKIGNYKG------TTIPFEKKLNPEWNQVFAF-- 92
+ V I++AR+L+ + GT DPYV+V + YK T+ ++ LNP +N+ FAF
Sbjct: 18 IIVNIIKARNLKAMDIGGTSDPYVKVWLM-YKDKRVEKKKTVTKKRNLNPIFNESFAFDI 76
Query: 93 --TKERLQAISVELLVKDKMIVNGDFIGKIKIDMPDIPKRVP--------PDSPLAPEWK 142
K R I + ++ KDK+ N D IGKI + P V P P+A +W
Sbjct: 77 PTEKLRETTIIITVMDKDKLSRN-DVIGKIYLSWKSGPGEVKHWKDMIARPRQPVA-QWH 134
Query: 143 RLEA 146
+L+A
Sbjct: 135 QLKA 138
>pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free
pdb|3KWU|A Chain A, Munc13-1 C2b-Domain, Calcium Bound
Length = 148
Score = 42.7 bits (99), Expect = 8e-04, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 27/50 (54%)
Query: 43 VRIVRARDLQVNQVTGTCDPYVEVKIGNYKGTTIPFEKKLNPEWNQVFAF 92
+ +V A+ LQ TG+ DPYV V++G K T LNP W + F F
Sbjct: 21 ITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHF 70
Score = 36.6 bits (83), Expect = 0.060, Method: Composition-based stats.
Identities = 14/57 (24%), Positives = 30/57 (52%)
Query: 376 MKSRDGRGTTDAYCVAKYANKWVRTRTVVDSFDPKWNEQYTWEVYDPYTVITLVVFD 432
++++D G++D Y + RT+T+ + +P W E + +E ++ I + V D
Sbjct: 29 LQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSDRIKVRVLD 85
>pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of
Synaptotagmin Vii
Length = 141
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 24 GRERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKI---GNYKGTTIPFEK 80
GR + + ++ E L V+I++A++L +GT DP+V++ + +K T K
Sbjct: 13 GRIQFSVGYNFQEST--LTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRK 70
Query: 81 KLNPEWNQVFAF 92
LNP WN+ F F
Sbjct: 71 NLNPHWNETFLF 82
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 9/96 (9%)
Query: 202 LRVNVIEAQDLVPKQRNRNPEVFIKAIF---GNVVLKTTVSAKKTVNPTWNEDLMFVAAE 258
L V +++AQ+L K + + F+K L+T V +K +NP WNE +F
Sbjct: 28 LTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKV-KRKNLNPHWNETFLFEGF- 85
Query: 259 PFDDP----LILTVEDKLGDNKEECLGRLVLPLSKA 290
P++ L L V D ++ + +G + +PL+K
Sbjct: 86 PYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKV 121
>pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C
Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution
Length = 140
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 9/99 (9%)
Query: 39 EFLYVRIVRARDLQVNQVTGTCDPYVEVKI-----GNYKGTTIPFEKKLNPEWNQVFAFT 93
E L+V + A++L G DPYV++K+ K T LNP+WN+ F F
Sbjct: 18 EKLHVTVRDAKNLIPXDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFK 77
Query: 94 ---KERLQAISVELLVKDKMIVNGDFIGKIKIDMPDIPK 129
++ + +SVE+ D+ N DF G + + ++ K
Sbjct: 78 LKPSDKDRRLSVEIWDWDRTTRN-DFXGSLSFGVSELXK 115
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 52/111 (46%), Gaps = 12/111 (10%)
Query: 202 LRVNVIEAQDLVPKQRN--RNPEVFIKAIFG--NVVLKTTVSAKKTVNPTWNEDLMFVAA 257
L V V +A++L+P N +P V +K I N + T + + T+NP WNE F
Sbjct: 20 LHVTVRDAKNLIPXDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTF-KL 78
Query: 258 EPFDDPLILTVE--DKLGDNKEECLGRLVLPLSKAGKRFLPLPAAAIWYNL 306
+P D L+VE D + + G L +S+ K PA+ WY L
Sbjct: 79 KPSDKDRRLSVEIWDWDRTTRNDFXGSLSFGVSELXK----XPASG-WYKL 124
>pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With
Ca2+ And Phosphatidylserine
Length = 139
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 39 EFLYVRIVRARDLQVNQVTGTCDPYVEVKI-----GNYKGTTIPFEKKLNPEWNQVFAFT 93
E L+V + A++L G DPYV++K+ K T LNP+WN+ F F
Sbjct: 17 EKLHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFK 76
Query: 94 ---KERLQAISVELLVKDKMIVNGDFIGKIKIDMPDIPK 129
++ + +SVE+ D+ N DF+G + + ++ K
Sbjct: 77 LKPSDKDRRLSVEIWDWDRTTRN-DFMGSLSFGVSELMK 114
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 54/111 (48%), Gaps = 12/111 (10%)
Query: 202 LRVNVIEAQDLVPKQRN--RNPEVFIKAIFG--NVVLKTTVSAKKTVNPTWNEDLMFVAA 257
L V V +A++L+P N +P V +K I N + T + + T+NP WNE F
Sbjct: 19 LHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTF-KL 77
Query: 258 EPFDDPLILTVE--DKLGDNKEECLGRLVLPLSKAGKRFLPLPAAAIWYNL 306
+P D L+VE D + + +G L +S+ + +PA+ WY L
Sbjct: 78 KPSDKDRRLSVEIWDWDRTTRNDFMGSLSFGVSE----LMKMPASG-WYKL 123
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 8/62 (12%)
Query: 363 LELGILSAKELLPMKSRDGRGTTDAYCVAKY-----ANKWVRTRTVVDSFDPKWNEQYTW 417
L + + AK L+PM D G +D Y K +T+T+ + +P+WNE +T+
Sbjct: 19 LHVTVRDAKNLIPM---DPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTF 75
Query: 418 EV 419
++
Sbjct: 76 KL 77
>pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain
Complexed With Ca2+ And Ptdins(4,5)p2
pdb|3RDJ|A Chain A, Rat Pkc C2 Domain Apo
pdb|3TWY|A Chain A, Rat Pkc C2 Domain Bound To Pb
Length = 137
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 39 EFLYVRIVRARDLQVNQVTGTCDPYVEVKI-----GNYKGTTIPFEKKLNPEWNQVFAFT 93
E L+V + A++L G DPYV++K+ K T LNP+WN+ F F
Sbjct: 16 EKLHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFK 75
Query: 94 ---KERLQAISVELLVKDKMIVNGDFIGKIKIDMPDIPK 129
++ + +SVE+ D+ N DF+G + + ++ K
Sbjct: 76 LKPSDKDRRLSVEIWDWDRTTRN-DFMGSLSFGVSELMK 113
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 54/111 (48%), Gaps = 12/111 (10%)
Query: 202 LRVNVIEAQDLVPKQRN--RNPEVFIKAIFG--NVVLKTTVSAKKTVNPTWNEDLMFVAA 257
L V V +A++L+P N +P V +K I N + T + + T+NP WNE F
Sbjct: 18 LHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTF-KL 76
Query: 258 EPFDDPLILTVE--DKLGDNKEECLGRLVLPLSKAGKRFLPLPAAAIWYNL 306
+P D L+VE D + + +G L +S+ + +PA+ WY L
Sbjct: 77 KPSDKDRRLSVEIWDWDRTTRNDFMGSLSFGVSE----LMKMPASG-WYKL 122
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 8/62 (12%)
Query: 363 LELGILSAKELLPMKSRDGRGTTDAYCVAKY-----ANKWVRTRTVVDSFDPKWNEQYTW 417
L + + AK L+PM D G +D Y K +T+T+ + +P+WNE +T+
Sbjct: 18 LHVTVRDAKNLIPM---DPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTF 74
Query: 418 EV 419
++
Sbjct: 75 KL 76
>pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3
Ubiquitin-Protein Ligase Nedd4-Like Protein
Length = 155
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 13/102 (12%)
Query: 41 LYVRIVRARDLQVNQVTGTCDPYVEVKIGNYKGT-------TIPFEKKLNPEWNQVFAFT 93
L V++V DL + G DPYV++ + T +K LNP+WN+ F F
Sbjct: 23 LRVKVVSGIDLAKKDIFGASDPYVKLSLYVADENRELALVQTKTIKKTLNPKWNEEFYF- 81
Query: 94 KERLQAISVELLVK---DKMIVNGDFIGKIKIDMPDIPKRVP 132
R+ + LL + + + DF+G++ + + +P P
Sbjct: 82 --RVNPSNHRLLFEVFDENRLTRDDFLGQVDVPLSHLPTEDP 121
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 7/93 (7%)
Query: 202 LRVNVIEAQDLVPKQRNRNPEVFIKAIF------GNVVLKTTVSAKKTVNPTWNEDLMFV 255
LRV V+ DL K + ++K + L T + KKT+NP WNE+ F
Sbjct: 23 LRVKVVSGIDLAKKDIFGASDPYVKLSLYVADENRELALVQTKTIKKTLNPKWNEEFYF- 81
Query: 256 AAEPFDDPLILTVEDKLGDNKEECLGRLVLPLS 288
P + L+ V D+ +++ LG++ +PLS
Sbjct: 82 RVNPSNHRLLFEVFDENRLTRDDFLGQVDVPLS 114
Score = 37.0 bits (84), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 398 VRTRTVVDSFDPKWNEQYTWEVYDPYTVITLVVFDNCHLHPGGAKDSRIGKVRIRLSTLE 457
V+T+T+ + +PKWNE++ + V + VFD L +D +G+V + LS L
Sbjct: 62 VQTKTIKKTLNPKWNEEFYFRVNPSNHRLLFEVFDENRL----TRDDFLGQVDVPLSHLP 117
Query: 458 TD 459
T+
Sbjct: 118 TE 119
>pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta)
pdb|1A25|B Chain B, C2 Domain From Protein Kinase C (Beta)
Length = 149
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 9/99 (9%)
Query: 39 EFLYVRIVRARDLQVNQVTGTCDPYVEVKI-----GNYKGTTIPFEKKLNPEWNQVFAFT 93
E L V + A++L G DPYV++K+ K T + LNPEWN+ F F
Sbjct: 31 EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQ 90
Query: 94 ---KERLQAISVELLVKDKMIVNGDFIGKIKIDMPDIPK 129
++ + +SVE+ D + DF+G + + ++ K
Sbjct: 91 LKESDKDRRLSVEIWDWD-LTSRNDFMGSLSFGISELQK 128
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 8/63 (12%)
Query: 362 VLELGILSAKELLPMKSRDGRGTTDAYCVAKY-----ANKWVRTRTVVDSFDPKWNEQYT 416
VL + + AK L+PM D G +D Y K + +T+T+ S +P+WNE +
Sbjct: 32 VLIVVVRDAKNLVPM---DPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFR 88
Query: 417 WEV 419
+++
Sbjct: 89 FQL 91
>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein
Kinase C Beta Ii
Length = 674
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 9/99 (9%)
Query: 39 EFLYVRIVRARDLQVNQVTGTCDPYVEVKI-----GNYKGTTIPFEKKLNPEWNQVFAFT 93
E L V + A++L G DPYV++K+ K T + LNPEWN+ F F
Sbjct: 172 EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQ 231
Query: 94 ---KERLQAISVELLVKDKMIVNGDFIGKIKIDMPDIPK 129
++ + +SVE+ D + DF+G + + ++ K
Sbjct: 232 LKESDKDRRLSVEIWDWD-LTSRNDFMGSLSFGISELQK 269
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 8/63 (12%)
Query: 362 VLELGILSAKELLPMKSRDGRGTTDAYCVAKY-----ANKWVRTRTVVDSFDPKWNEQYT 416
VL + + AK L+PM D G +D Y K + +T+T+ S +P+WNE +
Sbjct: 173 VLIVVVRDAKNLVPM---DPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFR 229
Query: 417 WEV 419
+++
Sbjct: 230 FQL 232
>pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
pdb|2R83|B Chain B, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
Length = 284
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 64/144 (44%), Gaps = 13/144 (9%)
Query: 27 RLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKI---GNYKGTTIPFEKKLN 83
+L S D Q L V I++A +L + GT DPYV+V + K T K LN
Sbjct: 7 KLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLN 66
Query: 84 PEWNQVFAFT--KERLQAISVELLVKD-KMIVNGDFIGKIKIDMPDIPKRVPPDSPLAPE 140
P +N+ F F L ++ + V D D IG+ K+ M + + E
Sbjct: 67 PVFNEQFTFKVPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDF-----GHVTEE 121
Query: 141 WKRLEA--KDGSRARGELMFAIWF 162
W+ L++ K+ G++ F++ +
Sbjct: 122 WRDLQSAEKEEQEKLGDICFSLRY 145
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 8/88 (9%)
Query: 41 LYVRIVRARDLQVNQVTGTCDPYVEVKI-----GNYKGTTIPFEKKLNPEWNQVFAFTK- 94
L V I+ A++L+ V G DPYV++ + K T + LNP +N+ F+F
Sbjct: 152 LTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVP 211
Query: 95 -ERLQAISVELLVKD-KMIVNGDFIGKI 120
E++Q + V + V D I D IGK+
Sbjct: 212 FEQIQKVQVVVTVLDYDKIGKNDAIGKV 239
>pdb|3B7Y|A Chain A, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
pdb|3B7Y|B Chain B, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
Length = 153
Score = 37.7 bits (86), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 47/110 (42%), Gaps = 9/110 (8%)
Query: 32 FDLVEQME---FLYVRIVRARDLQVNQVTGTCDPYVEVKIGNYKG------TTIPFEKKL 82
F L+E E + VR++ L + G DPYV V + + T +K L
Sbjct: 10 FGLLEDEENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSL 69
Query: 83 NPEWNQVFAFTKERLQAISVELLVKDKMIVNGDFIGKIKIDMPDIPKRVP 132
NP+WN+ F Q + + + + DF+G++ + + +P P
Sbjct: 70 NPKWNEEILFRVHPQQHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENP 119
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 10/90 (11%)
Query: 376 MKSRDGRGTTDAYCVAKYANKW------VRTRTVVDSFDPKWNEQYTWEVYDPYTVITLV 429
+ +D G +D Y + V+T+T+ S +PKWNE+ + V+ +
Sbjct: 32 LAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQQHRLLFE 91
Query: 430 VFDNCHLHPGGAKDSRIGKVRIRLSTLETD 459
VFD L +D +G+V + L L T+
Sbjct: 92 VFDENRL----TRDDFLGQVDVPLYPLPTE 117
Score = 32.7 bits (73), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 237 TVSAKKTVNPTWNEDLMFVAAEPFDDPLILTVEDKLGDNKEECLGRLVLPL 287
T + KK++NP WNE+++F P L+ V D+ +++ LG++ +PL
Sbjct: 62 TKTIKKSLNPKWNEEILF-RVHPQQHRLLFEVFDENRLTRDDFLGQVDVPL 111
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 45/103 (43%), Gaps = 2/103 (1%)
Query: 184 ENIMNCRSKVYVSPKLWYLRVNVIEAQDLVPKQRNRNPEVFIKAIFGNVVLKTTVSAKKT 243
E I + + K+ + +L YL NV+E D+ + N E + GNV L T K
Sbjct: 60 EKIKDNKEKIKNNRQLPYLVANVVEVMDMNEIEDKENSESTTQG--GNVNLDNTAVGKAA 117
Query: 244 VNPTWNEDLMFVAAEPFDDPLILTVEDKLGDNKEECLGRLVLP 286
V T + +F+ DP L D +G NK+ L LP
Sbjct: 118 VVKTSSRQTVFLPMVGLVDPDKLKPNDLVGVNKDSYLILDTLP 160
>pdb|1W15|A Chain A, Rat Synaptotagmin 4 C2b Domain In The Presence Of Calcium
pdb|1W16|A Chain A, Rat Synaptotagmin 4 C2b Domain In The Absence Of Calcium
Length = 153
Score = 37.0 bits (84), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 7/75 (9%)
Query: 41 LYVRIVRARDLQVNQVTGTCDPYVEVKIGNYK---GTTIPFEKKLNPE--WNQVFAFT-- 93
L V +++AR L + V+G DPYV+V + + K KK P +N++F F
Sbjct: 32 LTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIP 91
Query: 94 KERLQAISVELLVKD 108
E L+ ISVE LV D
Sbjct: 92 CESLEEISVEFLVLD 106
>pdb|1RSY|A Chain A, Structure Of The First C2-domain Of Synaptotagmin I: A
Novel Ca2+(slash)phospholipid Binding Fold
Length = 152
Score = 35.8 bits (81), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 55/128 (42%), Gaps = 11/128 (8%)
Query: 27 RLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKI---GNYKGTTIPFEKKLN 83
+L S D Q L V I++A +L + GT DPYV+V + K T K LN
Sbjct: 30 KLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLN 89
Query: 84 PEWNQVFAFT--KERLQAISVELLVKD-KMIVNGDFIGKIKIDMPDIPKRVPPDSPLAPE 140
P +N+ F F L ++ + V D D IG+ K +P + E
Sbjct: 90 PVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFK-----VPMNTVDFGHVTEE 144
Query: 141 WKRLEAKD 148
W+ L++ +
Sbjct: 145 WRDLQSAE 152
>pdb|3F04|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain
pdb|3F01|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
pdb|3F05|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Mn(Ii)
Length = 143
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 54/126 (42%), Gaps = 11/126 (8%)
Query: 27 RLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKI---GNYKGTTIPFEKKLN 83
+L S D Q L V I++A +L + GT DPYV+V + K T K LN
Sbjct: 22 KLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLN 81
Query: 84 PEWNQVFAFT--KERLQAISVELLVKD-KMIVNGDFIGKIKIDMPDIPKRVPPDSPLAPE 140
P +N+ F F L ++ + V D D IG+ K +P + E
Sbjct: 82 PVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFK-----VPMNTVDFGHVTEE 136
Query: 141 WKRLEA 146
W+ L++
Sbjct: 137 WRDLQS 142
>pdb|3F00|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
Length = 143
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 55/126 (43%), Gaps = 11/126 (8%)
Query: 27 RLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKI---GNYKGTTIPFEKKLN 83
+L S D Q L V I++A +L + GT DPYV+V + K T K LN
Sbjct: 22 KLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLN 81
Query: 84 PEWNQVFAFT--KERLQAISVELLVKD-KMIVNGDFIGKIKIDMPDIPKRVPPDSPLAPE 140
P +N+ F F L ++ + V D D IG+ K+ M + + E
Sbjct: 82 PVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDF-----GHVTEE 136
Query: 141 WKRLEA 146
W+ L++
Sbjct: 137 WRDLQS 142
>pdb|1BYN|A Chain A, Solution Structure Of The Calcium-Bound First C2-Domain Of
Synaptotagmin I
pdb|2K8M|A Chain A, S100a13-C2a Binary Complex Structure
pdb|2K8M|D Chain D, S100a13-C2a Binary Complex Structure
pdb|2K45|A Chain A, C2a Domain Of Synaptototagmin I Solution Structure In The
Fgf-1-C2a Binary Complex: Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2K4A|A Chain A, Fgf-1-C2a Binary Complex Structure: A Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2KI6|A Chain A, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
pdb|2KI6|F Chain F, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
Length = 128
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 54/126 (42%), Gaps = 11/126 (8%)
Query: 27 RLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKI---GNYKGTTIPFEKKLN 83
+L S D Q L V I++A +L + GT DPYV+V + K T K LN
Sbjct: 5 KLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLN 64
Query: 84 PEWNQVFAFT--KERLQAISVELLVKD-KMIVNGDFIGKIKIDMPDIPKRVPPDSPLAPE 140
P +N+ F F L ++ + V D D IG+ K +P + E
Sbjct: 65 PVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFK-----VPMNTVDFGHVTEE 119
Query: 141 WKRLEA 146
W+ L++
Sbjct: 120 WRDLQS 125
>pdb|2UZP|A Chain A, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|B Chain B, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|C Chain C, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma
Length = 144
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 14/118 (11%)
Query: 41 LYVRIVRARDLQVNQVTGTCDPYVEVKI-----GNYKGTTIPFEKKLNPEWNQVFAFT-- 93
++V + AR+L G DPYV++K+ K T + LNP WN+ F F
Sbjct: 22 IHVTVGEARNLIPMDPNGLSDPYVKLKLIPDPRNLTKQKTRTVKATLNPVWNETFVFNLK 81
Query: 94 -KERLQAISVELLVKDKMIVNGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGS 150
+ + +SVE+ D+ N DF+G + + ++ K +P+ +K L ++G
Sbjct: 82 PGDVERRLSVEVWDWDRTSRN-DFMGAMSFGVSELLK-----APVDGWYKLLNQEEGE 133
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Query: 196 SPKLWYLRVNVIEAQDLVPKQRN--RNPEVFIKAIFG--NVVLKTTVSAKKTVNPTWNED 251
+P + V V EA++L+P N +P V +K I N+ + T + K T+NP WNE
Sbjct: 16 APTADEIHVTVGEARNLIPMDPNGLSDPYVKLKLIPDPRNLTKQKTRTVKATLNPVWNET 75
Query: 252 LMFVAAEPFDDPLILTVE 269
+F +P D L+VE
Sbjct: 76 FVF-NLKPGDVERRLSVE 92
>pdb|1TJM|A Chain A, Crystallographic Identification Of Sr2+ Coordination Site
In Synaptotagmin I C2b Domain
pdb|1UOV|A Chain A, Calcium Binding Domain C2b
pdb|1UOW|A Chain A, Calcium Binding Domain C2b
pdb|1TJX|A Chain A, Crystallographic Identification Of Ca2+ Coordination Sites
In Synaptotagmin I C2b Domain
Length = 159
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 52/111 (46%), Gaps = 8/111 (7%)
Query: 18 GGGRVSGRERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKI-----GNYK 72
GGG + + S V L V I+ A++L+ V G DPYV++ + K
Sbjct: 4 GGGILEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKK 63
Query: 73 GTTIPFEKKLNPEWNQVFAFTK--ERLQAISVELLVKD-KMIVNGDFIGKI 120
T + LNP +N+ F+F E++Q + V + V D I D IGK+
Sbjct: 64 KKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKV 114
>pdb|3M7F|B Chain B, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX
Length = 176
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 10/90 (11%)
Query: 376 MKSRDGRGTTDAYCVAKYANKW------VRTRTVVDSFDPKWNEQYTWEVYDPYTVITLV 429
+ +D G +D Y + V+T+T+ S +PKWNE+ + V I
Sbjct: 20 LAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLPQRHRILFE 79
Query: 430 VFDNCHLHPGGAKDSRIGKVRIRLSTLETD 459
VFD L +D +G+V + L L T+
Sbjct: 80 VFDENRL----TRDDFLGQVDVPLYPLPTE 105
Score = 32.7 bits (73), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 44/97 (45%), Gaps = 8/97 (8%)
Query: 43 VRIVRARDLQVNQVTGTCDPYVEVKIGNYKG------TTIPFEKKLNPEWNQVFAF-TKE 95
V+++ L + G DPYV V + + T +K LNP+WN+ F
Sbjct: 12 VKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLP 71
Query: 96 RLQAISVELLVKDKMIVNGDFIGKIKIDMPDIPKRVP 132
+ I E+ ++++ DF+G++ + + +P P
Sbjct: 72 QRHRILFEVFDENRL-TRDDFLGQVDVPLYPLPTENP 107
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 237 TVSAKKTVNPTWNEDLMFVAAEPFDDPLILTVEDKLGDNKEECLGRLVLPL 287
T + KK++NP WNE+++F P ++ V D+ +++ LG++ +PL
Sbjct: 50 TKTIKKSLNPKWNEEILFRVL-PQRHRILFEVFDENRLTRDDFLGQVDVPL 99
>pdb|2CHD|A Chain A, Crystal Structure Of The C2a Domain Of Rabphilin-3a
Length = 142
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 15/89 (16%)
Query: 340 EATNYSSDLRSTMKQLWPPVI-----GVLELGILSAKELLPMKSRDGRGTTDAYCV---- 390
EA +Y SD +T+ L ++ L+ I+ AK L PM D G D Y
Sbjct: 3 EANSYDSDQATTLGALEFSLLYDQDNSNLQCTIIRAKGLKPM---DSNGLADPYVKLHLL 59
Query: 391 --AKYANKWVRTRTVVDSFDPKWNEQYTW 417
A +NK +RT+T+ ++ +P WNE +
Sbjct: 60 PGASKSNK-LRTKTLRNTRNPVWNETLQY 87
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 9/96 (9%)
Query: 41 LYVRIVRARDLQVNQVTGTCDPYVEVKI--GNYKGT---TIPFEKKLNPEWNQVFAF--- 92
L I+RA+ L+ G DPYV++ + G K T NP WN+ +
Sbjct: 31 LQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGI 90
Query: 93 TKERLQAISVELLVKDK-MIVNGDFIGKIKIDMPDI 127
T+E +Q ++ + V D+ + +FIG+ + + +
Sbjct: 91 TEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKL 126
>pdb|2K3H|A Chain A, Structural Determinants For Ca2+ And Pip2 Binding By The
C2a Domain Of Rabphilin-3a
Length = 140
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 15/89 (16%)
Query: 340 EATNYSSDLRSTMKQLWPPVI-----GVLELGILSAKELLPMKSRDGRGTTDAYCV---- 390
EA +Y SD +T+ L ++ L+ I+ AK L PM D G D Y
Sbjct: 1 EANSYDSDEATTLGALEFSLLYDQDNSNLQCTIIRAKGLKPM---DSNGLADPYVKLHLL 57
Query: 391 --AKYANKWVRTRTVVDSFDPKWNEQYTW 417
A +NK +RT+T+ ++ +P WNE +
Sbjct: 58 PGASKSNK-LRTKTLRNTRNPVWNETLQY 85
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 9/96 (9%)
Query: 41 LYVRIVRARDLQVNQVTGTCDPYVEVKI--GNYKGT---TIPFEKKLNPEWNQVFAF--- 92
L I+RA+ L+ G DPYV++ + G K T NP WN+ +
Sbjct: 29 LQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGI 88
Query: 93 TKERLQAISVELLVKDK-MIVNGDFIGKIKIDMPDI 127
T+E +Q ++ + V D+ + +FIG+ + + +
Sbjct: 89 TEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKL 124
>pdb|1K5W|A Chain A, Three-Dimensional Structure Of The Synaptotagmin 1 C2b-
Domain: Synaptotagmin 1 As A Phospholipid Binding
Machine
Length = 152
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 8/88 (9%)
Query: 41 LYVRIVRARDLQVNQVTGTCDPYVEVKI-----GNYKGTTIPFEKKLNPEWNQVFAFTK- 94
L V I+ A++L+ V G DPYV++ + K T + LNP +N+ F+F
Sbjct: 20 LTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVP 79
Query: 95 -ERLQAISVELLVKD-KMIVNGDFIGKI 120
E++Q + V + V D I D IGK+
Sbjct: 80 FEQIQKVQVVVTVLDYDKIGKNDAIGKV 107
>pdb|2LHA|A Chain A, Solution Structure Of C2b With Ip6
Length = 151
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 8/88 (9%)
Query: 41 LYVRIVRARDLQVNQVTGTCDPYVEVKI-----GNYKGTTIPFEKKLNPEWNQVFAFTK- 94
L V I+ A++L+ V G DPYV++ + K T + LNP +N+ F+F
Sbjct: 19 LTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVP 78
Query: 95 -ERLQAISVELLVKD-KMIVNGDFIGKI 120
E++Q + V + V D I D IGK+
Sbjct: 79 FEQIQKVQVVVTVLDYDKIGKNDAIGKV 106
>pdb|1V27|A Chain A, Solution Structure Of The First C2 Domain Of Rim2
Length = 141
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 58/128 (45%), Gaps = 23/128 (17%)
Query: 41 LYVRIVRARDLQVNQVTGTCDPYVEV-----KIGNYKGTTIPFEKKLNPEWNQVFAFT-- 93
L V I+ A+DL + +PYV++ + K T +K L P+WNQ F ++
Sbjct: 23 LIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPV 82
Query: 94 -KERLQAISVELLVKDKMIV---NGDFIGKIKIDMPDIPKRVPPDSPL---APEWKRLEA 146
+ + +E+ + D+ V +F+G+I I++ ++ L P W +L+
Sbjct: 83 HRREFRERMLEITLWDQARVREEESEFLGEILIEL---------ETALLDDEPHWYKLQT 133
Query: 147 KDGSRARG 154
D + G
Sbjct: 134 HDSGPSSG 141
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 61/128 (47%), Gaps = 20/128 (15%)
Query: 195 VSPKLWY------LRVNVIEAQDLVPKQRNRNPEVFIKAIF----GNVVLKTTVSAKKTV 244
+S KLW+ L V ++ A+DL ++ R ++K F + + T + KKT+
Sbjct: 10 LSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTL 69
Query: 245 NPTWNEDLMF--VAAEPFDDPLI-LTVED--KLGDNKEECLGRLVLPLSKAGKRFLPLPA 299
P WN+ ++ V F + ++ +T+ D ++ + + E LG +++ L A L
Sbjct: 70 EPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETAL-----LDD 124
Query: 300 AAIWYNLE 307
WY L+
Sbjct: 125 EPHWYKLQ 132
>pdb|2BWQ|A Chain A, Crystal Structure Of The Rim2 C2a-Domain At 1.4 Angstrom
Resolution
Length = 129
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 55/114 (48%), Gaps = 13/114 (11%)
Query: 22 VSGRERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEV-----KIGNYKGTTI 76
+SG+ + FD V L V I+ A+DL + +PYV++ + K T
Sbjct: 3 LSGQLSIKLWFDKVGHQ--LIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTK 60
Query: 77 PFEKKLNPEWNQVFAFT---KERLQAISVELLVKDKMIV---NGDFIGKIKIDM 124
+K L P+WNQ F ++ + + +E+ + D+ V +F+G+I I++
Sbjct: 61 TVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIEL 114
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 64/130 (49%), Gaps = 24/130 (18%)
Query: 195 VSPKLWY------LRVNVIEAQDLVPKQ--RNRNPEVFIKAIF----GNVVLKTTVSAKK 242
+S KLW+ L V ++ A+DL ++ R RNP ++K F + + T + KK
Sbjct: 7 LSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNP--YVKIYFLPDRSDKNKRRTKTVKK 64
Query: 243 TVNPTWNEDLMF--VAAEPFDDPLI-LTVED--KLGDNKEECLGRLVLPLSKAGKRFLPL 297
T+ P WN+ ++ V F + ++ +T+ D ++ + + E LG +++ L A L
Sbjct: 65 TLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETA-----LL 119
Query: 298 PAAAIWYNLE 307
WY L+
Sbjct: 120 DDEPHWYKLQ 129
>pdb|1CJY|A Chain A, Human Cytosolic Phospholipase A2
pdb|1CJY|B Chain B, Human Cytosolic Phospholipase A2
Length = 749
Score = 32.7 bits (73), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 59 TCDPYVEVKIG---NYKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIVNGD 115
T DPYVE+ I + + T F +NP WN+ F F + Q +E+ + D V +
Sbjct: 41 TPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANYVMDE 100
Query: 116 FIG 118
+G
Sbjct: 101 TLG 103
>pdb|1BCI|A Chain A, C2 Domain Of Cytosolic Phospholipase A2, Nmr, Minimized
Average Structure
Length = 138
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 59 TCDPYVEVKIG---NYKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIVNGD 115
T DPYVE+ I + + T F +NP WN+ F F + Q +E+ + D V +
Sbjct: 41 TPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANYVMDE 100
Query: 116 FIG 118
+G
Sbjct: 101 TLG 103
>pdb|1RLW|A Chain A, Calcium-Phospholipid Binding Domain From Cytosolic
Phospholipase A2
Length = 126
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 59 TCDPYVEVKIG---NYKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIVNGD 115
T DPYVE+ I + + T F +NP WN+ F F + Q +E+ + D V +
Sbjct: 26 TPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANYVMDE 85
Query: 116 FIG 118
+G
Sbjct: 86 TLG 88
>pdb|2CM5|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin
Length = 166
Score = 31.6 bits (70), Expect = 1.8, Method: Composition-based stats.
Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 8/111 (7%)
Query: 20 GRVSGRERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKI-----GNYKGT 74
G + R ++ S Q L V I+R L G DP+V++ + K
Sbjct: 18 GDIEERGKILVSLXYSTQQGGLIVGIIRCVHLAAXDANGYSDPFVKLWLKPDXGKKAKHK 77
Query: 75 TIPFEKKLNPEWNQVFAF--TKERLQAISVELLVKDKMI-VNGDFIGKIKI 122
T +K LNPE+N+ F + L S+++ V D I + D+IG ++
Sbjct: 78 TQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQL 128
>pdb|1QAS|A Chain A, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta 1
pdb|1QAS|B Chain B, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta 1
pdb|1QAT|A Chain A, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta Complex With Samarium (Iii) Chloride
pdb|1QAT|B Chain B, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta Complex With Samarium (Iii) Chloride
Length = 622
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 46/106 (43%), Gaps = 11/106 (10%)
Query: 202 LRVNVIEAQDLVPKQRNRN----PEVFIKAIFG----NVVLKTTVSAKKTVNPTWNEDLM 253
LRV +I Q L +N+N P+V ++ I G +T V NP W+ +
Sbjct: 497 LRVRIISGQQLPKVNKNKNSIVDPKVIVE-IHGVGRDTGSRQTAVITNNGFNPRWDMEFE 555
Query: 254 FVAAEPFDDPLILTVEDKLGDNKEECLGRLVLPLS--KAGKRFLPL 297
F P + VED +K + +G+ +P + K G R + L
Sbjct: 556 FEVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQGYRHVHL 601
>pdb|1DJG|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Lanthanum
pdb|1DJG|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Lanthanum
pdb|1DJH|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Barium
pdb|1DJH|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Barium
pdb|1DJI|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Calcium
pdb|1DJI|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Calcium
pdb|1DJW|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2-Methylene-1,2-Cyclic-
Monophosphonate
pdb|1DJW|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2-Methylene-1,2-Cyclic-
Monophosphonate
pdb|1DJX|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-1,4,5-Trisphosphate
pdb|1DJX|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-1,4,5-Trisphosphate
pdb|1DJY|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2,4,5-Trisphosphate
pdb|1DJY|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2,4,5-Trisphosphate
pdb|1DJZ|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-4,5-Bisphosphate
pdb|1DJZ|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-4,5-Bisphosphate
pdb|2ISD|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
pdb|2ISD|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Length = 624
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 46/106 (43%), Gaps = 11/106 (10%)
Query: 202 LRVNVIEAQDLVPKQRNRN----PEVFIKAIFG----NVVLKTTVSAKKTVNPTWNEDLM 253
LRV +I Q L +N+N P+V ++ I G +T V NP W+ +
Sbjct: 499 LRVRIISGQQLPKVNKNKNSIVDPKVIVE-IHGVGRDTGSRQTAVITNNGFNPRWDMEFE 557
Query: 254 FVAAEPFDDPLILTVEDKLGDNKEECLGRLVLPLS--KAGKRFLPL 297
F P + VED +K + +G+ +P + K G R + L
Sbjct: 558 FEVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQGYRHVHL 603
>pdb|2CM6|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin3a
pdb|2CM6|B Chain B, Crystal Structure Of The C2b Domain Of Rabphilin3a
Length = 166
Score = 30.0 bits (66), Expect = 5.0, Method: Composition-based stats.
Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 8/111 (7%)
Query: 20 GRVSGRERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKI-----GNYKGT 74
G + R ++ S Q L V I+R L G DP+V++ + K
Sbjct: 18 GDIEERGKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHK 77
Query: 75 TIPFEKKLNPEWNQVFAF--TKERLQAISVELLVKDKMI-VNGDFIGKIKI 122
T +K LNPE+N+ F + L S+++ V D I + D+IG ++
Sbjct: 78 TQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQL 128
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,997,188
Number of Sequences: 62578
Number of extensions: 961277
Number of successful extensions: 1977
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 1898
Number of HSP's gapped (non-prelim): 103
length of query: 768
length of database: 14,973,337
effective HSP length: 106
effective length of query: 662
effective length of database: 8,340,069
effective search space: 5521125678
effective search space used: 5521125678
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)