Query 004208
Match_columns 768
No_of_seqs 431 out of 3259
Neff 9.1
Searched_HMMs 46136
Date Thu Mar 28 19:24:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004208.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004208hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08372 PRT_C: Plant phosphor 100.0 1E-43 2.2E-48 321.7 14.1 156 613-768 1-156 (156)
2 KOG1028 Ca2+-dependent phospho 100.0 6.3E-29 1.4E-33 269.2 25.1 226 23-289 153-393 (421)
3 COG5038 Ca2+-dependent lipid-b 100.0 1.2E-27 2.6E-32 269.7 32.9 398 35-491 432-842 (1227)
4 KOG1028 Ca2+-dependent phospho 99.9 3.7E-25 8E-30 239.9 26.3 215 199-455 166-393 (421)
5 COG5038 Ca2+-dependent lipid-b 99.9 3.9E-23 8.4E-28 233.5 32.2 412 38-490 578-1162(1227)
6 KOG2059 Ras GTPase-activating 99.9 7E-23 1.5E-27 219.4 16.7 251 201-494 6-281 (800)
7 cd04019 C2C_MCTP_PRT_plant C2 99.9 2E-22 4.4E-27 188.1 16.6 150 201-350 1-150 (150)
8 KOG2059 Ras GTPase-activating 99.9 9.8E-23 2.1E-27 218.3 15.8 249 39-331 5-275 (800)
9 cd08379 C2D_MCTP_PRT_plant C2 99.9 1.1E-21 2.3E-26 176.6 14.8 119 363-484 2-125 (126)
10 cd04016 C2_Tollip C2 domain pr 99.9 1.2E-21 2.5E-26 175.1 14.2 119 360-488 1-121 (121)
11 cd04016 C2_Tollip C2 domain pr 99.9 4.7E-21 1E-25 171.3 15.6 117 39-162 2-121 (121)
12 cd08378 C2B_MCTP_PRT_plant C2 99.9 4.3E-21 9.4E-26 173.1 14.1 121 40-164 1-121 (121)
13 cd04019 C2C_MCTP_PRT_plant C2 99.8 1E-20 2.2E-25 176.7 14.0 137 363-506 2-150 (150)
14 cd08682 C2_Rab11-FIP_classI C2 99.8 3.5E-20 7.6E-25 169.2 12.9 117 363-486 1-125 (126)
15 KOG1030 Predicted Ca2+-depende 99.8 1.9E-20 4E-25 169.7 10.3 118 359-487 4-121 (168)
16 cd08682 C2_Rab11-FIP_classI C2 99.8 7.4E-20 1.6E-24 167.1 13.6 117 41-160 1-125 (126)
17 KOG1030 Predicted Ca2+-depende 99.8 5.4E-20 1.2E-24 166.7 10.5 94 36-130 3-97 (168)
18 cd04042 C2A_MCTP_PRT C2 domain 99.8 2.8E-19 6.1E-24 162.1 14.8 118 40-163 1-120 (121)
19 cd04042 C2A_MCTP_PRT C2 domain 99.8 2.9E-19 6.3E-24 162.0 14.5 118 363-489 2-120 (121)
20 cd08379 C2D_MCTP_PRT_plant C2 99.8 2.2E-19 4.8E-24 161.5 13.5 112 41-158 2-125 (126)
21 cd08381 C2B_PI3K_class_II C2 d 99.8 1.5E-19 3.3E-24 163.3 11.9 111 24-144 2-121 (122)
22 cd04022 C2A_MCTP_PRT_plant C2 99.8 4.4E-19 9.5E-24 162.2 14.6 120 40-163 1-126 (127)
23 cd08375 C2_Intersectin C2 doma 99.8 5.4E-19 1.2E-23 162.6 14.4 123 36-162 12-135 (136)
24 cd08401 C2A_RasA2_RasA3 C2 dom 99.8 9.9E-19 2.2E-23 157.7 14.6 119 363-488 2-121 (121)
25 cd04015 C2_plant_PLD C2 domain 99.8 1.1E-18 2.3E-23 164.9 15.0 124 360-488 6-157 (158)
26 KOG1326 Membrane-associated pr 99.8 1.7E-19 3.7E-24 200.3 10.8 400 27-455 195-703 (1105)
27 cd08394 C2A_Munc13 C2 domain f 99.8 8.5E-19 1.8E-23 155.1 13.0 102 38-147 1-102 (127)
28 cd08681 C2_fungal_Inn1p-like C 99.8 7.6E-19 1.6E-23 158.7 12.8 117 39-162 1-118 (118)
29 cd08677 C2A_Synaptotagmin-13 C 99.8 6.1E-19 1.3E-23 154.6 11.3 100 26-130 3-109 (118)
30 cd08375 C2_Intersectin C2 doma 99.8 2.9E-18 6.2E-23 157.8 15.7 119 357-488 11-135 (136)
31 cd08376 C2B_MCTP_PRT C2 domain 99.8 3.3E-18 7.1E-23 154.0 14.5 113 363-489 2-115 (116)
32 cd08400 C2_Ras_p21A1 C2 domain 99.8 4.4E-18 9.4E-23 155.0 15.2 118 361-489 4-123 (126)
33 cd08376 C2B_MCTP_PRT C2 domain 99.8 3.6E-18 7.7E-23 153.7 14.4 113 40-162 1-114 (116)
34 cd08681 C2_fungal_Inn1p-like C 99.8 2.2E-18 4.9E-23 155.6 12.8 116 361-488 1-118 (118)
35 cd04028 C2B_RIM1alpha C2 domai 99.8 2.1E-18 4.5E-23 158.9 12.7 114 25-148 19-140 (146)
36 cd04024 C2A_Synaptotagmin-like 99.8 3.8E-18 8.3E-23 156.6 14.2 121 39-161 1-127 (128)
37 cd08393 C2A_SLP-1_2 C2 domain 99.8 1.7E-18 3.7E-23 157.4 11.6 115 24-145 2-125 (125)
38 cd08392 C2A_SLP-3 C2 domain fi 99.8 2.6E-18 5.6E-23 156.2 12.2 118 24-145 2-128 (128)
39 cd08377 C2C_MCTP_PRT C2 domain 99.8 8.8E-18 1.9E-22 152.0 15.1 116 39-162 1-118 (119)
40 cd08377 C2C_MCTP_PRT C2 domain 99.8 8.1E-18 1.8E-22 152.3 14.9 118 361-488 1-118 (119)
41 cd04033 C2_NEDD4_NEDD4L C2 dom 99.8 6.7E-18 1.5E-22 156.0 14.2 122 40-162 1-132 (133)
42 cd04022 C2A_MCTP_PRT_plant C2 99.8 6.8E-18 1.5E-22 154.3 13.9 120 363-489 2-126 (127)
43 cd04024 C2A_Synaptotagmin-like 99.8 7.6E-18 1.6E-22 154.6 13.8 120 361-487 1-127 (128)
44 cd08678 C2_C21orf25-like C2 do 99.8 1.1E-17 2.4E-22 152.6 14.5 119 363-490 1-121 (126)
45 cd08395 C2C_Munc13 C2 domain t 99.8 5.9E-18 1.3E-22 150.9 12.3 102 40-147 1-113 (120)
46 cd04029 C2A_SLP-4_5 C2 domain 99.8 6.1E-18 1.3E-22 153.6 12.6 115 24-145 2-125 (125)
47 cd04046 C2_Calpain C2 domain p 99.8 2E-17 4.3E-22 150.8 16.0 118 38-163 2-122 (126)
48 cd04017 C2D_Ferlin C2 domain f 99.8 2E-17 4.3E-22 152.8 15.4 122 39-164 1-133 (135)
49 cd04036 C2_cPLA2 C2 domain pre 99.8 1.1E-17 2.3E-22 151.2 13.3 113 41-162 2-117 (119)
50 cd08400 C2_Ras_p21A1 C2 domain 99.8 2.6E-17 5.6E-22 149.9 15.8 118 38-164 3-124 (126)
51 cd08401 C2A_RasA2_RasA3 C2 dom 99.8 1.6E-17 3.4E-22 150.0 14.0 115 41-161 2-120 (121)
52 cd04015 C2_plant_PLD C2 domain 99.8 2.5E-17 5.5E-22 155.6 16.0 118 39-162 7-157 (158)
53 cd08391 C2A_C2C_Synaptotagmin_ 99.8 1.4E-17 3E-22 151.3 13.7 114 39-161 1-120 (121)
54 cd04025 C2B_RasA1_RasA4 C2 dom 99.7 2E-17 4.4E-22 150.4 14.6 116 40-160 1-122 (123)
55 cd08678 C2_C21orf25-like C2 do 99.7 2E-17 4.3E-22 151.0 14.2 117 41-165 1-122 (126)
56 cd04050 C2B_Synaptotagmin-like 99.7 7.9E-18 1.7E-22 148.3 11.1 103 40-147 1-103 (105)
57 cd04029 C2A_SLP-4_5 C2 domain 99.7 1.8E-17 3.9E-22 150.5 13.4 105 358-468 12-124 (125)
58 cd04025 C2B_RasA1_RasA4 C2 dom 99.7 1.6E-17 3.5E-22 151.0 13.0 119 362-487 1-123 (123)
59 cd08680 C2_Kibra C2 domain fou 99.7 9E-18 2E-22 151.1 11.1 114 25-144 2-124 (124)
60 cd04028 C2B_RIM1alpha C2 domai 99.7 2.6E-17 5.7E-22 151.6 14.2 105 361-471 29-139 (146)
61 cd08387 C2A_Synaptotagmin-8 C2 99.7 1.2E-17 2.6E-22 152.1 11.9 115 24-145 3-123 (124)
62 cd08385 C2A_Synaptotagmin-1-5- 99.7 1.4E-17 3E-22 151.8 12.4 115 24-145 3-123 (124)
63 cd08388 C2A_Synaptotagmin-4-11 99.7 1.3E-17 2.9E-22 152.0 12.1 117 24-145 3-127 (128)
64 cd04011 C2B_Ferlin C2 domain s 99.7 1.8E-17 4E-22 147.6 12.7 105 37-147 2-111 (111)
65 PF04842 DUF639: Plant protein 99.7 1.6E-17 3.5E-22 181.0 14.6 177 560-760 483-664 (683)
66 cd08381 C2B_PI3K_class_II C2 d 99.7 2.5E-17 5.5E-22 148.8 13.5 100 201-306 14-121 (122)
67 cd04054 C2A_Rasal1_RasA4 C2 do 99.7 3.9E-17 8.4E-22 147.8 14.7 116 41-161 2-120 (121)
68 cd04033 C2_NEDD4_NEDD4L C2 dom 99.7 2.9E-17 6.3E-22 151.7 14.1 118 363-488 2-132 (133)
69 cd04010 C2B_RasA3 C2 domain se 99.7 2E-17 4.4E-22 153.4 12.6 104 40-149 1-125 (148)
70 cd04054 C2A_Rasal1_RasA4 C2 do 99.7 4.2E-17 9.1E-22 147.5 14.1 117 363-487 2-120 (121)
71 cd08677 C2A_Synaptotagmin-13 C 99.7 3.5E-17 7.6E-22 143.5 12.8 101 198-306 12-118 (118)
72 cd08378 C2B_MCTP_PRT_plant C2 99.7 2.6E-17 5.6E-22 148.5 12.4 112 363-488 2-119 (121)
73 cd04027 C2B_Munc13 C2 domain s 99.7 4.6E-17 1E-21 148.6 14.2 113 40-160 2-127 (127)
74 cd04031 C2A_RIM1alpha C2 domai 99.7 1.8E-17 3.8E-22 151.4 11.4 114 24-145 3-125 (125)
75 cd08393 C2A_SLP-1_2 C2 domain 99.7 3.8E-17 8.3E-22 148.5 13.5 103 200-307 15-125 (125)
76 cd08391 C2A_C2C_Synaptotagmin_ 99.7 3.5E-17 7.7E-22 148.6 13.3 117 361-488 1-121 (121)
77 cd04046 C2_Calpain C2 domain p 99.7 9.6E-17 2.1E-21 146.3 15.9 120 360-489 2-122 (126)
78 cd04036 C2_cPLA2 C2 domain pre 99.7 6.7E-17 1.4E-21 146.0 14.1 113 363-489 2-118 (119)
79 cd04030 C2C_KIAA1228 C2 domain 99.7 4.3E-17 9.4E-22 149.3 12.4 115 24-145 3-127 (127)
80 KOG1326 Membrane-associated pr 99.7 4.7E-16 1E-20 173.2 22.8 285 197-488 610-1021(1105)
81 cd08392 C2A_SLP-3 C2 domain fi 99.7 9.7E-17 2.1E-21 145.9 14.1 106 200-307 15-128 (128)
82 cd08389 C2A_Synaptotagmin-14_1 99.7 4.2E-17 9.2E-22 147.9 11.3 115 24-146 3-124 (124)
83 cd08685 C2_RGS-like C2 domain 99.7 3.6E-17 7.8E-22 146.9 10.5 109 26-144 3-119 (119)
84 cd08373 C2A_Ferlin C2 domain f 99.7 1.6E-16 3.4E-21 145.4 14.6 115 45-166 2-119 (127)
85 cd04039 C2_PSD C2 domain prese 99.7 6.8E-17 1.5E-21 142.3 11.6 93 39-131 1-99 (108)
86 cd08386 C2A_Synaptotagmin-7 C2 99.7 7.4E-17 1.6E-21 147.2 12.2 115 24-145 3-124 (125)
87 cd08382 C2_Smurf-like C2 domai 99.7 1.5E-16 3.2E-21 144.4 13.7 114 41-160 2-122 (123)
88 cd08387 C2A_Synaptotagmin-8 C2 99.7 1.7E-16 3.6E-21 144.6 13.9 103 200-307 16-123 (124)
89 cd04044 C2A_Tricalbin-like C2 99.7 1.4E-16 3E-21 145.4 13.2 119 360-488 1-122 (124)
90 cd04051 C2_SRC2_like C2 domain 99.7 5.6E-17 1.2E-21 148.0 10.5 118 40-158 1-125 (125)
91 cd04041 C2A_fungal C2 domain f 99.7 5.3E-17 1.2E-21 144.5 10.0 99 39-145 1-107 (111)
92 cd04014 C2_PKC_epsilon C2 doma 99.7 3.1E-16 6.8E-21 144.4 15.4 115 39-164 4-130 (132)
93 cd08394 C2A_Munc13 C2 domain f 99.7 1.1E-16 2.5E-21 141.6 11.8 100 360-471 1-102 (127)
94 cd08688 C2_KIAA0528-like C2 do 99.7 1E-16 2.2E-21 142.4 11.7 104 41-146 1-109 (110)
95 cd08521 C2A_SLP C2 domain firs 99.7 9.2E-17 2E-21 146.3 11.5 114 24-144 1-123 (123)
96 cd04050 C2B_Synaptotagmin-like 99.7 1.5E-16 3.1E-21 140.2 11.9 102 202-309 2-103 (105)
97 cd04044 C2A_Tricalbin-like C2 99.7 2.5E-16 5.4E-21 143.6 13.6 119 38-163 1-123 (124)
98 cd04010 C2B_RasA3 C2 domain se 99.7 1.7E-16 3.7E-21 147.3 12.6 115 363-486 2-147 (148)
99 cd04039 C2_PSD C2 domain prese 99.7 1.7E-16 3.6E-21 139.8 11.8 96 361-460 1-99 (108)
100 cd08688 C2_KIAA0528-like C2 do 99.7 1.2E-16 2.6E-21 142.0 10.8 102 363-470 1-109 (110)
101 cd08390 C2A_Synaptotagmin-15-1 99.7 2.2E-16 4.8E-21 143.7 12.8 115 25-146 2-123 (123)
102 cd04043 C2_Munc13_fungal C2 do 99.7 4.5E-16 9.7E-21 142.3 14.9 119 40-166 2-124 (126)
103 cd08395 C2C_Munc13 C2 domain t 99.7 2E-16 4.3E-21 141.1 12.2 101 363-471 2-113 (120)
104 cd04027 C2B_Munc13 C2 domain s 99.7 3.5E-16 7.5E-21 142.8 14.0 119 362-486 2-127 (127)
105 cd08382 C2_Smurf-like C2 domai 99.7 3.3E-16 7.1E-21 142.2 13.6 118 363-486 2-122 (123)
106 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.7 1.4E-16 3.1E-21 151.0 11.7 117 25-146 3-138 (162)
107 cd08685 C2_RGS-like C2 domain 99.7 2.1E-16 4.6E-21 141.9 12.0 101 361-468 12-119 (119)
108 cd04014 C2_PKC_epsilon C2 doma 99.7 5.3E-16 1.2E-20 142.9 14.7 118 360-490 3-130 (132)
109 cd04013 C2_SynGAP_like C2 doma 99.7 6.4E-16 1.4E-20 141.9 14.9 122 361-490 11-140 (146)
110 cd08385 C2A_Synaptotagmin-1-5- 99.7 7.7E-16 1.7E-20 140.3 14.4 103 200-307 16-123 (124)
111 cd08406 C2B_Synaptotagmin-12 C 99.7 9.3E-17 2E-21 147.2 8.3 100 25-126 3-110 (136)
112 cd04031 C2A_RIM1alpha C2 domai 99.7 7.7E-16 1.7E-20 140.6 14.3 102 200-307 16-125 (125)
113 cd04032 C2_Perforin C2 domain 99.7 3.1E-16 6.8E-21 141.3 11.1 93 37-130 26-120 (127)
114 cd04030 C2C_KIAA1228 C2 domain 99.7 8.8E-16 1.9E-20 140.6 14.3 103 200-307 16-127 (127)
115 cd04011 C2B_Ferlin C2 domain s 99.7 5E-16 1.1E-20 138.3 12.3 106 197-308 1-110 (111)
116 cd08388 C2A_Synaptotagmin-4-11 99.7 8.9E-16 1.9E-20 140.0 13.8 106 200-308 16-128 (128)
117 cd08407 C2B_Synaptotagmin-13 C 99.7 7.9E-16 1.7E-20 140.9 13.4 89 200-289 15-112 (138)
118 cd04017 C2D_Ferlin C2 domain f 99.7 1.2E-15 2.6E-20 140.8 14.8 120 201-331 2-131 (135)
119 cd04018 C2C_Ferlin C2 domain t 99.7 5.9E-16 1.3E-20 143.9 12.4 108 41-148 2-127 (151)
120 cd04041 C2A_fungal C2 domain f 99.7 3.6E-16 7.8E-21 139.1 10.5 99 361-469 1-107 (111)
121 cd08386 C2A_Synaptotagmin-7 C2 99.7 1.6E-15 3.5E-20 138.4 14.8 104 200-308 16-125 (125)
122 cd08521 C2A_SLP C2 domain firs 99.7 7.8E-16 1.7E-20 140.1 12.7 104 358-468 11-123 (123)
123 cd08373 C2A_Ferlin C2 domain f 99.7 1.3E-15 2.9E-20 139.3 14.1 114 367-491 2-118 (127)
124 cd08676 C2A_Munc13-like C2 dom 99.7 5.2E-16 1.1E-20 144.4 11.3 100 36-144 25-153 (153)
125 cd08384 C2B_Rabphilin_Doc2 C2 99.7 2.5E-16 5.3E-21 145.4 9.1 114 27-149 3-124 (133)
126 cd08680 C2_Kibra C2 domain fou 99.7 7.5E-16 1.6E-20 138.7 12.0 106 197-306 11-124 (124)
127 cd04038 C2_ArfGAP C2 domain pr 99.7 7.7E-16 1.7E-20 142.5 11.7 91 38-130 1-92 (145)
128 cd08406 C2B_Synaptotagmin-12 C 99.7 1.2E-15 2.6E-20 139.9 12.7 103 200-309 15-124 (136)
129 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.6 1.9E-15 4E-20 143.4 14.3 131 153-309 1-139 (162)
130 cd08407 C2B_Synaptotagmin-13 C 99.6 6.2E-16 1.3E-20 141.6 10.1 100 25-126 3-112 (138)
131 cd04032 C2_Perforin C2 domain 99.6 1.6E-15 3.4E-20 136.8 12.2 95 357-459 24-120 (127)
132 cd08690 C2_Freud-1 C2 domain f 99.6 4E-15 8.7E-20 138.1 15.2 119 41-165 4-139 (155)
133 cd04051 C2_SRC2_like C2 domain 99.6 1.3E-15 2.9E-20 138.9 11.8 112 363-484 2-125 (125)
134 cd04021 C2_E3_ubiquitin_ligase 99.6 2.5E-15 5.4E-20 136.6 13.4 118 40-160 3-124 (125)
135 cd08408 C2B_Synaptotagmin-14_1 99.6 1.5E-15 3.2E-20 140.1 11.6 115 26-148 4-127 (138)
136 cd04043 C2_Munc13_fungal C2 do 99.6 4.6E-15 1E-19 135.6 14.8 118 201-333 2-122 (126)
137 cd08404 C2B_Synaptotagmin-4 C2 99.6 5.3E-16 1.2E-20 143.6 8.5 116 25-149 3-126 (136)
138 cd08389 C2A_Synaptotagmin-14_1 99.6 2.9E-15 6.3E-20 135.9 13.2 103 359-469 14-123 (124)
139 cd08675 C2B_RasGAP C2 domain s 99.6 1.6E-15 3.5E-20 139.9 11.5 103 41-149 1-123 (137)
140 cd08410 C2B_Synaptotagmin-17 C 99.6 6E-16 1.3E-20 142.7 8.6 117 25-149 2-126 (135)
141 cd08692 C2B_Tac2-N C2 domain s 99.6 3.6E-15 7.9E-20 134.2 13.1 93 197-290 11-110 (135)
142 cd08402 C2B_Synaptotagmin-1 C2 99.6 6.6E-16 1.4E-20 143.0 8.6 116 24-148 2-125 (136)
143 cd08405 C2B_Synaptotagmin-7 C2 99.6 6.9E-16 1.5E-20 142.9 8.5 116 24-148 2-125 (136)
144 cd04045 C2C_Tricalbin-like C2 99.6 3.1E-15 6.8E-20 134.7 12.6 104 39-149 1-106 (120)
145 cd08390 C2A_Synaptotagmin-15-1 99.6 4.4E-15 9.5E-20 135.1 13.5 105 358-469 11-122 (123)
146 cd04009 C2B_Munc13-like C2 dom 99.6 1.2E-15 2.6E-20 140.5 9.9 104 25-130 4-119 (133)
147 cd04038 C2_ArfGAP C2 domain pr 99.6 2.2E-15 4.8E-20 139.5 11.7 91 360-458 1-91 (145)
148 cd04037 C2E_Ferlin C2 domain f 99.6 2E-15 4.3E-20 137.0 11.1 90 40-129 1-93 (124)
149 cd04049 C2_putative_Elicitor-r 99.6 2.9E-15 6.2E-20 136.5 12.2 104 39-147 1-109 (124)
150 cd04045 C2C_Tricalbin-like C2 99.6 2.9E-15 6.2E-20 135.0 11.9 103 361-471 1-104 (120)
151 cd04049 C2_putative_Elicitor-r 99.6 2.9E-15 6.4E-20 136.4 11.9 103 361-470 1-108 (124)
152 cd04040 C2D_Tricalbin-like C2 99.6 3.5E-15 7.5E-20 134.0 12.2 112 41-158 1-114 (115)
153 cd04026 C2_PKC_alpha_gamma C2 99.6 2.4E-15 5.3E-20 138.4 11.3 115 25-149 3-124 (131)
154 cd08409 C2B_Synaptotagmin-15 C 99.6 3.2E-15 6.9E-20 138.1 11.8 115 24-146 2-124 (137)
155 cd04018 C2C_Ferlin C2 domain t 99.6 4.1E-15 8.9E-20 138.2 12.4 108 202-310 2-127 (151)
156 cd08403 C2B_Synaptotagmin-3-5- 99.6 3.3E-15 7.2E-20 137.9 11.4 115 25-148 2-124 (134)
157 KOG0696 Serine/threonine prote 99.6 5.3E-16 1.1E-20 157.9 6.2 103 201-309 181-289 (683)
158 cd08690 C2_Freud-1 C2 domain f 99.6 1.2E-14 2.7E-19 134.8 14.8 118 363-489 4-137 (155)
159 cd08691 C2_NEDL1-like C2 domai 99.6 1.1E-14 2.4E-19 133.2 14.3 116 40-160 2-136 (137)
160 cd08402 C2B_Synaptotagmin-1 C2 99.6 8.5E-15 1.8E-19 135.6 13.3 104 199-309 14-124 (136)
161 cd08383 C2A_RasGAP C2 domain ( 99.6 1.3E-14 2.8E-19 130.9 14.1 111 41-162 2-117 (117)
162 cd08405 C2B_Synaptotagmin-7 C2 99.6 1.3E-14 2.9E-19 134.3 13.7 90 200-290 15-111 (136)
163 KOG1013 Synaptic vesicle prote 99.6 4.8E-16 1.1E-20 154.0 4.2 227 24-289 80-328 (362)
164 cd04035 C2A_Rabphilin_Doc2 C2 99.6 9.1E-15 2E-19 133.0 12.1 105 24-130 2-114 (123)
165 cd04040 C2D_Tricalbin-like C2 99.6 1.2E-14 2.5E-19 130.6 12.7 112 363-484 1-114 (115)
166 PLN03008 Phospholipase D delta 99.6 8.6E-15 1.9E-19 164.6 14.2 105 382-491 74-179 (868)
167 cd04021 C2_E3_ubiquitin_ligase 99.6 2.2E-14 4.9E-19 130.3 14.0 116 362-486 3-124 (125)
168 cd00276 C2B_Synaptotagmin C2 d 99.6 3.5E-15 7.6E-20 138.1 8.4 117 24-149 1-125 (134)
169 cd08675 C2B_RasGAP C2 domain s 99.6 1.2E-14 2.6E-19 134.0 11.8 106 202-313 1-125 (137)
170 cd08383 C2A_RasGAP C2 domain ( 99.6 2.4E-14 5.2E-19 129.1 13.5 112 363-488 2-117 (117)
171 cd08410 C2B_Synaptotagmin-17 C 99.6 1.9E-14 4E-19 132.8 12.8 104 200-309 14-124 (135)
172 cd04052 C2B_Tricalbin-like C2 99.6 1.4E-14 3.1E-19 128.7 11.2 101 56-164 9-110 (111)
173 cd04009 C2B_Munc13-like C2 dom 99.6 2.4E-14 5.1E-19 131.9 12.9 92 200-292 16-118 (133)
174 cd08676 C2A_Munc13-like C2 dom 99.6 1.8E-14 3.8E-19 134.1 12.1 102 195-306 23-153 (153)
175 cd08404 C2B_Synaptotagmin-4 C2 99.6 3.3E-14 7.1E-19 131.6 13.8 103 200-309 15-124 (136)
176 cd00275 C2_PLC_like C2 domain 99.6 4E-14 8.7E-19 129.9 14.2 116 39-162 2-127 (128)
177 cd08692 C2B_Tac2-N C2 domain s 99.6 4E-14 8.6E-19 127.5 13.2 105 357-469 10-122 (135)
178 cd08403 C2B_Synaptotagmin-3-5- 99.6 3.6E-14 7.9E-19 131.0 13.4 104 199-309 13-123 (134)
179 cd08408 C2B_Synaptotagmin-14_1 99.6 2.6E-14 5.7E-19 131.8 12.3 104 200-309 15-126 (138)
180 cd04013 C2_SynGAP_like C2 doma 99.6 5.2E-14 1.1E-18 129.3 13.9 115 39-164 11-140 (146)
181 cd08409 C2B_Synaptotagmin-15 C 99.6 4.3E-14 9.2E-19 130.6 13.5 103 200-308 15-124 (137)
182 cd08691 C2_NEDL1-like C2 domai 99.6 6.3E-14 1.4E-18 128.3 14.0 117 363-486 3-136 (137)
183 cd04026 C2_PKC_alpha_gamma C2 99.6 4.5E-14 9.8E-19 129.9 13.2 104 201-310 14-123 (131)
184 cd08384 C2B_Rabphilin_Doc2 C2 99.5 4.8E-14 1E-18 130.1 11.7 106 197-309 10-122 (133)
185 cd00276 C2B_Synaptotagmin C2 d 99.5 1.7E-14 3.6E-19 133.6 8.4 104 359-471 12-123 (134)
186 KOG0696 Serine/threonine prote 99.5 3.4E-15 7.3E-20 152.1 3.5 114 27-148 170-290 (683)
187 cd04048 C2A_Copine C2 domain f 99.5 5.9E-14 1.3E-18 126.9 10.8 97 45-146 6-114 (120)
188 PLN03008 Phospholipase D delta 99.5 6.3E-14 1.4E-18 157.7 13.2 124 39-168 14-182 (868)
189 cd04052 C2B_Tricalbin-like C2 99.5 8.2E-14 1.8E-18 123.9 11.3 100 380-490 8-110 (111)
190 cd04037 C2E_Ferlin C2 domain f 99.5 9.2E-14 2E-18 126.1 11.4 90 201-291 1-92 (124)
191 cd08686 C2_ABR C2 domain in th 99.5 8E-14 1.7E-18 121.9 10.4 79 41-126 1-92 (118)
192 cd00275 C2_PLC_like C2 domain 99.5 3.7E-13 8E-18 123.4 14.7 117 362-488 3-127 (128)
193 cd04048 C2A_Copine C2 domain f 99.5 1.4E-13 3.1E-18 124.4 11.5 96 367-469 6-113 (120)
194 cd04035 C2A_Rabphilin_Doc2 C2 99.5 2.8E-13 6E-18 123.2 13.3 98 360-465 14-120 (123)
195 PLN03200 cellulose synthase-in 99.5 8.6E-14 1.9E-18 171.1 11.7 118 358-489 1977-2100(2102)
196 cd08686 C2_ABR C2 domain in th 99.5 9.6E-13 2.1E-17 115.1 12.8 83 363-454 1-91 (118)
197 cd04047 C2B_Copine C2 domain s 99.4 5.3E-13 1.1E-17 118.7 10.3 87 43-130 4-101 (110)
198 KOG1013 Synaptic vesicle prote 99.4 1.1E-13 2.4E-18 137.5 5.6 219 200-454 93-327 (362)
199 PF00168 C2: C2 domain; Inter 99.4 8.5E-13 1.8E-17 111.3 10.4 81 41-121 1-85 (85)
200 PLN03200 cellulose synthase-in 99.4 3.2E-13 7E-18 166.1 10.4 121 34-163 1975-2100(2102)
201 cd04047 C2B_Copine C2 domain s 99.4 1.6E-12 3.5E-17 115.6 10.0 87 366-460 5-102 (110)
202 PF06398 Pex24p: Integral pero 99.4 4.2E-12 9.2E-17 137.5 15.1 178 555-747 1-194 (359)
203 KOG1011 Neurotransmitter relea 99.4 8.5E-13 1.8E-17 140.1 7.7 120 40-167 296-428 (1283)
204 KOG1011 Neurotransmitter relea 99.3 3.2E-12 6.9E-17 135.8 9.0 125 361-491 295-426 (1283)
205 PF00168 C2: C2 domain; Inter 99.3 1.6E-11 3.4E-16 103.4 9.1 82 202-284 1-85 (85)
206 PLN02270 phospholipase D alpha 99.2 1.7E-10 3.6E-15 130.6 13.9 127 360-491 7-150 (808)
207 cd00030 C2 C2 domain. The C2 d 99.2 1.4E-10 3.1E-15 100.5 10.6 99 41-144 1-102 (102)
208 cd08374 C2F_Ferlin C2 domain s 99.2 1.6E-10 3.4E-15 104.3 10.4 93 363-460 2-125 (133)
209 cd08374 C2F_Ferlin C2 domain s 99.2 1.7E-10 3.6E-15 104.1 10.4 91 41-131 2-125 (133)
210 smart00239 C2 Protein kinase C 99.2 2E-10 4.2E-15 99.9 10.5 90 41-130 2-95 (101)
211 cd00030 C2 C2 domain. The C2 d 99.1 2.5E-10 5.3E-15 99.0 10.5 99 363-468 1-102 (102)
212 PLN02223 phosphoinositide phos 99.1 5.4E-10 1.2E-14 121.6 14.0 115 39-161 409-535 (537)
213 smart00239 C2 Protein kinase C 99.1 5.3E-10 1.1E-14 97.1 10.9 91 363-460 2-96 (101)
214 PLN02270 phospholipase D alpha 99.0 2.1E-09 4.5E-14 121.8 13.6 122 39-166 8-151 (808)
215 PLN02952 phosphoinositide phos 99.0 3.1E-09 6.7E-14 118.5 14.3 115 39-161 470-597 (599)
216 KOG1327 Copine [Signal transdu 99.0 6.2E-09 1.4E-13 112.3 16.0 241 232-519 41-318 (529)
217 cd08689 C2_fungal_Pkc1p C2 dom 99.0 1.2E-09 2.6E-14 91.9 7.6 83 41-128 1-87 (109)
218 KOG1328 Synaptic vesicle prote 99.0 1.3E-10 2.9E-15 125.6 1.1 124 36-165 111-303 (1103)
219 PF11696 DUF3292: Protein of u 98.9 1.1E-08 2.3E-13 112.7 15.0 73 552-625 83-156 (642)
220 PLN02223 phosphoinositide phos 98.9 1E-08 2.3E-13 111.7 14.4 106 360-472 408-521 (537)
221 PLN02230 phosphoinositide phos 98.9 7.9E-09 1.7E-13 115.0 12.7 117 38-162 468-597 (598)
222 cd08689 C2_fungal_Pkc1p C2 dom 98.9 4.9E-09 1.1E-13 88.3 8.3 87 363-458 1-88 (109)
223 PLN02952 phosphoinositide phos 98.9 1.6E-08 3.5E-13 112.8 14.4 120 360-489 469-597 (599)
224 PLN02222 phosphoinositide phos 98.9 1.6E-08 3.4E-13 112.5 14.0 115 39-161 452-579 (581)
225 KOG1031 Predicted Ca2+-depende 98.9 1E-08 2.2E-13 108.4 10.9 120 361-489 3-136 (1169)
226 PLN02228 Phosphoinositide phos 98.9 2.4E-08 5.2E-13 110.8 13.7 118 39-164 431-562 (567)
227 KOG1327 Copine [Signal transdu 98.8 4.9E-08 1.1E-12 105.5 14.7 180 72-292 42-236 (529)
228 KOG0169 Phosphoinositide-speci 98.8 1.9E-08 4.1E-13 111.6 11.0 117 39-163 616-744 (746)
229 KOG1264 Phospholipase C [Lipid 98.8 2.5E-08 5.5E-13 109.5 10.8 118 39-165 1065-1191(1267)
230 KOG1031 Predicted Ca2+-depende 98.8 1.1E-08 2.4E-13 108.1 7.8 124 39-163 3-136 (1169)
231 PLN02230 phosphoinositide phos 98.7 9.5E-08 2.1E-12 106.5 14.0 106 360-472 468-582 (598)
232 PLN02222 phosphoinositide phos 98.7 1.3E-07 2.7E-12 105.4 14.6 106 360-472 451-565 (581)
233 PLN02228 Phosphoinositide phos 98.7 1.3E-07 2.8E-12 105.1 14.5 122 360-489 430-561 (567)
234 KOG1328 Synaptic vesicle prote 98.7 5.9E-09 1.3E-13 113.1 2.3 100 28-129 938-1049(1103)
235 KOG0905 Phosphoinositide 3-kin 98.6 4.2E-08 9E-13 111.9 5.4 123 15-146 1504-1635(1639)
236 KOG0169 Phosphoinositide-speci 98.6 4.4E-07 9.6E-12 101.1 12.7 119 362-488 617-743 (746)
237 cd08683 C2_C2cd3 C2 domain fou 98.5 2E-07 4.2E-12 81.0 5.3 106 363-468 1-143 (143)
238 PLN02352 phospholipase D epsil 98.5 1.3E-06 2.8E-11 99.3 12.7 119 360-491 9-132 (758)
239 KOG1264 Phospholipase C [Lipid 98.4 1.7E-06 3.7E-11 95.5 10.5 99 361-470 1065-1171(1267)
240 PF12416 DUF3668: Cep120 prote 98.3 0.00012 2.6E-09 76.8 22.9 243 41-292 2-295 (340)
241 PLN02352 phospholipase D epsil 98.3 3.4E-06 7.3E-11 96.1 12.0 118 39-167 10-134 (758)
242 KOG0905 Phosphoinositide 3-kin 98.2 1.9E-06 4.1E-11 98.8 6.3 105 200-309 1524-1636(1639)
243 PF12416 DUF3668: Cep120 prote 98.1 0.00068 1.5E-08 71.3 21.9 237 202-458 2-295 (340)
244 cd08683 C2_C2cd3 C2 domain fou 97.9 9.7E-06 2.1E-10 70.7 3.6 100 41-144 1-143 (143)
245 PLN02964 phosphatidylserine de 97.6 7E-05 1.5E-09 85.1 6.3 86 38-130 53-140 (644)
246 cd08684 C2A_Tac2-N C2 domain f 97.6 6.4E-05 1.4E-09 60.7 3.6 87 42-130 2-95 (103)
247 cd08684 C2A_Tac2-N C2 domain f 97.5 0.00014 3.1E-09 58.7 4.5 95 203-305 2-102 (103)
248 PLN02964 phosphatidylserine de 97.4 0.00026 5.7E-09 80.5 6.5 87 198-292 52-139 (644)
249 KOG3837 Uncharacterized conser 97.3 0.00014 3.1E-09 75.2 3.5 120 39-164 367-504 (523)
250 KOG2060 Rab3 effector RIM1 and 97.1 0.00044 9.6E-09 71.2 4.2 110 358-472 266-381 (405)
251 KOG2060 Rab3 effector RIM1 and 97.1 0.00039 8.4E-09 71.6 3.6 113 32-149 262-382 (405)
252 KOG3837 Uncharacterized conser 96.8 0.0015 3.2E-08 67.9 5.2 119 362-489 368-503 (523)
253 PF15627 CEP76-C2: CEP76 C2 do 96.4 0.055 1.2E-06 50.0 12.0 127 197-331 6-149 (156)
254 PF15627 CEP76-C2: CEP76 C2 do 96.3 0.054 1.2E-06 50.1 11.1 128 358-489 6-150 (156)
255 cd08398 C2_PI3K_class_I_alpha 95.5 0.13 2.9E-06 48.2 10.6 87 362-455 9-105 (158)
256 KOG1265 Phospholipase C [Lipid 95.4 0.072 1.6E-06 60.9 9.4 109 38-161 702-821 (1189)
257 KOG1265 Phospholipase C [Lipid 95.2 0.054 1.2E-06 61.9 7.8 95 200-309 703-806 (1189)
258 cd08693 C2_PI3K_class_I_beta_d 95.2 0.14 3.1E-06 49.0 9.7 86 201-289 9-119 (173)
259 PF10358 NT-C2: N-terminal C2 95.1 0.49 1.1E-05 43.8 13.1 115 360-489 6-135 (143)
260 PF08372 PRT_C: Plant phosphor 95.0 0.091 2E-06 48.7 7.6 58 560-618 62-119 (156)
261 cd08693 C2_PI3K_class_I_beta_d 94.8 0.13 2.9E-06 49.2 8.3 103 40-164 9-137 (173)
262 cd08687 C2_PKN-like C2 domain 94.7 0.34 7.3E-06 40.1 9.0 63 60-127 9-72 (98)
263 cd08398 C2_PI3K_class_I_alpha 94.6 0.21 4.5E-06 46.9 9.0 107 32-165 4-124 (158)
264 cd08380 C2_PI3K_like C2 domain 94.0 0.37 8.1E-06 45.4 9.6 87 202-290 10-107 (156)
265 cd08380 C2_PI3K_like C2 domain 94.0 0.43 9.3E-06 45.0 9.9 89 362-456 9-107 (156)
266 PF10358 NT-C2: N-terminal C2 94.0 1.5 3.3E-05 40.5 13.5 120 38-166 6-138 (143)
267 PF02453 Reticulon: Reticulon; 93.6 0.0075 1.6E-07 57.9 -3.0 61 687-747 90-150 (169)
268 cd08397 C2_PI3K_class_III C2 d 93.6 0.42 9.1E-06 45.0 8.9 69 384-456 29-107 (159)
269 KOG1452 Predicted Rho GTPase-a 93.1 0.21 4.5E-06 50.6 6.1 97 32-130 44-144 (442)
270 cd08399 C2_PI3K_class_I_gamma 92.9 0.91 2E-05 43.5 10.1 89 363-455 12-121 (178)
271 cd08397 C2_PI3K_class_III C2 d 92.9 0.46 9.9E-06 44.8 8.0 70 219-289 28-106 (159)
272 cd04012 C2A_PI3K_class_II C2 d 92.6 0.59 1.3E-05 44.8 8.5 90 201-290 9-119 (171)
273 cd08399 C2_PI3K_class_I_gamma 92.0 1.1 2.3E-05 43.0 9.3 69 202-272 12-88 (178)
274 KOG1452 Predicted Rho GTPase-a 91.4 0.58 1.3E-05 47.5 7.0 76 358-435 48-124 (442)
275 cd04012 C2A_PI3K_class_II C2 d 90.8 1.9 4.2E-05 41.3 9.9 92 362-456 9-119 (171)
276 PF00792 PI3K_C2: Phosphoinosi 90.7 2.8 6.1E-05 38.7 10.6 75 74-168 23-106 (142)
277 PF00792 PI3K_C2: Phosphoinosi 88.7 2.7 5.9E-05 38.8 8.9 66 387-456 4-85 (142)
278 cd08694 C2_Dock-A C2 domains f 87.5 5.4 0.00012 38.6 10.1 40 72-111 54-95 (196)
279 smart00142 PI3K_C2 Phosphoinos 86.7 4.1 9E-05 35.0 8.2 70 202-272 13-91 (100)
280 cd08695 C2_Dock-B C2 domains f 86.6 5.9 0.00013 38.3 9.8 40 72-111 54-95 (189)
281 cd08687 C2_PKN-like C2 domain 82.6 12 0.00025 31.3 8.3 65 383-456 7-72 (98)
282 KOG1329 Phospholipase D1 [Lipi 81.7 2.2 4.7E-05 50.0 5.4 102 384-489 137-240 (887)
283 smart00142 PI3K_C2 Phosphoinos 80.8 9.2 0.0002 32.9 7.8 71 41-111 13-92 (100)
284 PF11696 DUF3292: Protein of u 80.5 4.4 9.4E-05 46.2 7.1 56 689-747 107-162 (642)
285 PF15625 CC2D2AN-C2: CC2D2A N- 79.5 11 0.00024 35.9 8.7 70 59-129 36-108 (168)
286 PF06398 Pex24p: Integral pero 78.8 4 8.8E-05 44.3 6.2 46 680-725 12-60 (359)
287 PF14429 DOCK-C2: C2 domain in 77.9 7.4 0.00016 37.7 7.1 58 397-455 60-120 (184)
288 PF15625 CC2D2AN-C2: CC2D2A N- 77.8 30 0.00065 32.9 11.1 88 220-309 36-125 (168)
289 PF11618 DUF3250: Protein of u 76.7 6.7 0.00014 34.2 5.7 95 63-162 2-104 (107)
290 cd08695 C2_Dock-B C2 domains f 75.2 31 0.00066 33.4 10.3 55 232-287 53-111 (189)
291 KOG2419 Phosphatidylserine dec 75.1 0.88 1.9E-05 50.5 -0.2 156 220-435 304-463 (975)
292 PF14429 DOCK-C2: C2 domain in 74.7 8.8 0.00019 37.2 6.7 55 72-126 60-120 (184)
293 PF11618 DUF3250: Protein of u 73.8 22 0.00047 31.0 8.1 93 388-489 2-105 (107)
294 PF08151 FerI: FerI (NUC094) d 71.7 7.4 0.00016 31.1 4.3 48 123-172 2-51 (72)
295 cd08694 C2_Dock-A C2 domains f 70.9 48 0.001 32.2 10.4 55 232-287 53-113 (196)
296 KOG3543 Ca2+-dependent activat 68.9 30 0.00065 38.8 9.5 118 362-489 342-459 (1218)
297 PF06219 DUF1005: Protein of u 64.4 81 0.0018 34.1 11.3 107 384-491 35-169 (460)
298 KOG3543 Ca2+-dependent activat 62.8 46 0.001 37.4 9.5 113 39-162 341-458 (1218)
299 PTZ00447 apical membrane antig 62.5 94 0.002 32.6 11.0 121 27-161 48-171 (508)
300 cd05137 RasGAP_CLA2_BUD2 CLA2/ 56.1 14 0.0003 40.4 4.3 45 445-491 1-46 (395)
301 PF06219 DUF1005: Protein of u 55.1 62 0.0013 35.0 8.6 104 59-163 35-167 (460)
302 PTZ00447 apical membrane antig 54.9 1.5E+02 0.0032 31.2 10.9 113 358-487 55-171 (508)
303 PF07162 B9-C2: Ciliary basal 54.9 1.3E+02 0.0028 28.6 10.3 80 202-287 4-101 (168)
304 cd08679 C2_DOCK180_related C2 54.4 41 0.0009 32.3 6.9 51 75-125 56-114 (178)
305 KOG1792 Reticulon [Intracellul 54.3 29 0.00064 34.7 5.9 39 689-727 132-170 (230)
306 PF07162 B9-C2: Ciliary basal 54.3 1.1E+02 0.0024 29.1 9.7 78 364-454 5-102 (168)
307 cd08696 C2_Dock-C C2 domains f 54.3 45 0.00099 32.0 7.0 60 396-455 54-118 (179)
308 KOG4027 Uncharacterized conser 53.0 60 0.0013 30.0 7.0 67 384-454 25-109 (187)
309 PF14909 SPATA6: Spermatogenes 52.1 1E+02 0.0022 28.1 8.4 87 41-130 4-102 (140)
310 cd08696 C2_Dock-C C2 domains f 49.2 53 0.0011 31.6 6.6 40 72-111 55-96 (179)
311 KOG0694 Serine/threonine prote 48.7 4.5 9.7E-05 46.2 -0.9 94 59-164 27-122 (694)
312 PF04842 DUF639: Plant protein 48.0 22 0.00048 40.9 4.4 60 683-742 492-554 (683)
313 KOG1329 Phospholipase D1 [Lipi 47.0 42 0.00092 39.8 6.5 84 60-149 138-224 (887)
314 PF00957 Synaptobrevin: Synapt 47.0 72 0.0016 26.5 6.4 40 672-711 32-71 (89)
315 KOG0860 Synaptobrevin/VAMP-lik 46.3 70 0.0015 28.1 6.1 39 673-711 59-97 (116)
316 cd08697 C2_Dock-D C2 domains f 46.3 69 0.0015 30.9 6.9 39 72-110 57-97 (185)
317 PF14924 DUF4497: Protein of u 45.7 53 0.0011 28.8 5.6 62 424-490 29-105 (112)
318 cd08679 C2_DOCK180_related C2 45.1 59 0.0013 31.2 6.4 55 234-289 54-115 (178)
319 PF09726 Macoilin: Transmembra 44.1 65 0.0014 38.1 7.6 30 709-738 76-106 (697)
320 cd08697 C2_Dock-D C2 domains f 43.6 92 0.002 30.1 7.3 60 396-455 56-123 (185)
321 PF10409 PTEN_C2: C2 domain of 38.1 3E+02 0.0065 24.7 9.7 87 202-290 6-97 (134)
322 KOG2419 Phosphatidylserine dec 37.3 9.9 0.00021 42.7 -0.4 82 34-126 275-361 (975)
323 PF14851 FAM176: FAM176 family 36.6 65 0.0014 30.0 4.8 26 589-618 16-41 (153)
324 PF10409 PTEN_C2: C2 domain of 36.5 3.2E+02 0.0069 24.5 10.6 89 40-128 5-98 (134)
325 PF02453 Reticulon: Reticulon; 35.9 12 0.00026 35.5 0.0 22 697-718 1-22 (169)
326 KOG0904 Phosphatidylinositol 3 32.7 1.8E+02 0.0038 34.8 8.4 101 362-468 344-472 (1076)
327 PF14963 CAML: Calcium signal- 30.2 4.7E+02 0.01 26.4 9.7 34 597-630 170-203 (263)
328 KOG0694 Serine/threonine prote 29.8 21 0.00046 41.0 0.6 95 220-333 27-122 (694)
329 PF04281 Tom22: Mitochondrial 28.3 3.8E+02 0.0082 24.5 8.2 40 665-704 49-90 (137)
330 PF14909 SPATA6: Spermatogenes 27.5 4.9E+02 0.011 23.9 8.8 85 202-291 4-100 (140)
331 KOG4269 Rac GTPase-activating 27.0 28 0.00061 40.9 1.0 66 38-110 758-828 (1112)
332 KOG0904 Phosphatidylinositol 3 24.6 1.2E+02 0.0026 36.1 5.3 68 39-109 343-421 (1076)
333 PF08060 NOSIC: NOSIC (NUC001) 23.6 1.7E+02 0.0036 21.8 4.3 32 681-712 7-38 (53)
334 PHA03164 hypothetical protein; 22.5 83 0.0018 25.0 2.5 32 589-627 51-82 (88)
335 KOG4111 Translocase of outer m 21.4 2.5E+02 0.0053 25.4 5.4 50 665-715 40-91 (136)
336 PHA01159 hypothetical protein 21.2 4.3E+02 0.0094 23.2 6.8 33 673-705 5-37 (114)
337 PF01544 CorA: CorA-like Mg2+ 20.8 4E+02 0.0087 27.4 8.3 68 670-743 195-262 (292)
338 KOG4269 Rac GTPase-activating 20.2 60 0.0013 38.4 1.8 87 359-454 757-854 (1112)
No 1
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=100.00 E-value=1e-43 Score=321.70 Aligned_cols=156 Identities=59% Similarity=1.034 Sum_probs=153.1
Q ss_pred HHHHHHHHHHHHhhhcccCCCCCCCCCcccccccCCCCCCCccccCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 004208 613 LATFFFILFGVVIMKFKRRPRHPPHMDIKLSFADKAHPDELDEEFDTFPSSKQGHILTTRYDRLRSIAARMVTLNGDLDS 692 (768)
Q Consensus 613 lp~~~l~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~e~d~~~~~~~~~~~~~~~~~l~~~~~~vQ~~l~~~a~ 692 (768)
+|.+|++++++++|||..||++|.|+|.++|+++..++||+|||+|++|++++.+.+++||++|++++++|||++|++|+
T Consensus 1 lp~~~l~~~~~~~w~yr~rpr~p~~~d~~ls~~~~~~~deldEEfD~~ps~~~~~~lr~Rydrlr~va~rvQ~vlgd~At 80 (156)
T PF08372_consen 1 LPTVFLYLFLIGLWNYRFRPRHPPHMDTKLSHADSAHPDELDEEFDTFPSSRPPDSLRMRYDRLRSVAGRVQNVLGDVAT 80 (156)
T ss_pred CchHHHHHHHHHHhccccCCCCCCCCCccccccccCCcchhhhhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhccccCchhHHHHHHHHHHHHHHHHHHhHHhhhhhhheecccCCCccCCCCCchhHHHhcCCCcccCCC
Q 004208 693 QLERLQSLIDWRDPRATAMFSIFCLMAAVVFYIVPLWILLLFAGPFVMRHPRFRIDIPALPQNFLRRLPSKAESLL 768 (768)
Q Consensus 693 ~~e~~~~l~~w~~p~~t~~~~~~l~~~~~v~~~vP~r~i~l~~g~~~~r~P~~r~~~~~~~~~~~~rlPs~~~~~~ 768 (768)
++||++|+++|+||.+|++++++|+++++++|++|+|+++++||+|++|||++|.++|+.+.|||+||||++|+||
T Consensus 81 ~gERl~allsWrdP~aT~lf~~~clv~avvly~vP~r~l~l~~gly~~r~P~~R~~~P~~~~nff~RlPs~~d~~l 156 (156)
T PF08372_consen 81 QGERLQALLSWRDPRATALFVVFCLVAAVVLYFVPFRVLVLIWGLYKLRHPRFRNPLPSPPLNFFRRLPSRSDSML 156 (156)
T ss_pred HHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCccccCCCCcHHHHHHHHCCCchhhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999986
No 2
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=6.3e-29 Score=269.22 Aligned_cols=226 Identities=29% Similarity=0.418 Sum_probs=193.1
Q ss_pred cCCCcccccccccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeEeeeecCCCCCeeeeEEEEEe--ccC
Q 004208 23 SGRERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGN---YKGTTIPFEKKLNPEWNQVFAFTK--ERL 97 (768)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~---~~~~T~~~~~t~nP~Wne~f~f~~--~~~ 97 (768)
.|...+++.||. +...|.|+|++|++|+..|..|.+||||++++.+ .+.+|++.++|+||+|||+|.|.+ .++
T Consensus 153 ~G~l~fsl~Yd~--~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l 230 (421)
T KOG1028|consen 153 VGNLQFSLQYDF--ELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEEL 230 (421)
T ss_pred eeeEEEEEEecc--cCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHh
Confidence 346788999997 4689999999999999999778899999999986 468999999999999999999995 356
Q ss_pred CCceEEEEEEEcCCC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCC--CccceEEEEEEEEcccCCccccccc
Q 004208 98 QAISVELLVKDKMIV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDG--SRARGELMFAIWFGTQADEAFSSAW 174 (768)
Q Consensus 98 ~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~--~~~~G~i~l~i~~~~~~d~~~~~~~ 174 (768)
....|.+.|||+|++ ++++||++.++|..+..... ...|.+|..... ....|+|+++++|.+.
T Consensus 231 ~~~~L~l~V~~~drfsr~~~iGev~~~l~~~~~~~~-----~~~w~~l~~~~~~~~~~~gel~~sL~Y~p~--------- 296 (421)
T KOG1028|consen 231 SNRVLHLSVYDFDRFSRHDFIGEVILPLGEVDLLST-----TLFWKDLQPSSTDSEELAGELLLSLCYLPT--------- 296 (421)
T ss_pred ccCEEEEEEEecCCcccccEEEEEEecCcccccccc-----ceeeeccccccCCcccccceEEEEEEeecC---------
Confidence 789999999999999 99999999999998876632 468999987632 1233899999999743
Q ss_pred cccccccccccccccccceeecCCeeEEEEEEEEeecCCCCCCCCCCCcEEEEEE--CC---eEEeeecccCCCCCCccc
Q 004208 175 HSDTAVVSGENIMNCRSKVYVSPKLWYLRVNVIEAQDLVPKQRNRNPEVFIKAIF--GN---VVLKTTVSAKKTVNPTWN 249 (768)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~p~~~~L~V~v~~a~~L~~~d~~~~~dpyV~v~l--g~---~~~~T~~i~~~t~nP~wn 249 (768)
.+.|+|.|++|++|..++..+.+||||++.+ +. .+.+|.+.++ ++||+||
T Consensus 297 ------------------------~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~-~~npv~n 351 (421)
T KOG1028|consen 297 ------------------------AGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKK-TLNPVFN 351 (421)
T ss_pred ------------------------CCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccC-CCCCccc
Confidence 3579999999999999999999999999999 22 3567777776 9999999
Q ss_pred ceEEEEecCC--CCCcEEEEEEeccCCCCCceeEEEEEeccc
Q 004208 250 EDLMFVAAEP--FDDPLILTVEDKLGDNKEECLGRLVLPLSK 289 (768)
Q Consensus 250 e~f~f~~~~~--~~~~L~i~V~d~d~~~~d~~lG~~~i~l~~ 289 (768)
|+|.|.+... ....+.|+|||+|..+++++||.+.++...
T Consensus 352 esf~F~vp~~~l~~~~l~l~V~d~d~~~~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 352 ETFVFDVPPEQLAEVSLELTVWDHDTLGSNDLIGRCILGSDS 393 (421)
T ss_pred ccEEEeCCHHHhheeEEEEEEEEcccccccceeeEEEecCCC
Confidence 9999987643 345799999999999999999999998764
No 3
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.96 E-value=1.2e-27 Score=269.68 Aligned_cols=398 Identities=19% Similarity=0.227 Sum_probs=299.5
Q ss_pred cccccEEEEEEEEeecCCCCC--CCCCCCcEEEEEECC-eeeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcCC
Q 004208 35 VEQMEFLYVRIVRARDLQVNQ--VTGTCDPYVEVKIGN-YKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMI 111 (768)
Q Consensus 35 ~~~~~~L~V~i~~a~~L~~~d--~~g~~dPyv~v~~~~-~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~ 111 (768)
....|+|.|+|.+|++|...| ..+..|||+.+.+.+ ...+|++++++.||+|||+|++.+... ++.|.++|||.+.
T Consensus 432 ~~aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~lns~-~d~L~LslyD~n~ 510 (1227)
T COG5038 432 GTAIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSF-TDPLNLSLYDFNS 510 (1227)
T ss_pred CCeeEEEEEEEeeccCcccccccccCCCCceEEEEeccccCCccceeeccCCccccceEEEEeccc-CCceeEEEEeccc
Confidence 346899999999999999888 689999999999877 567999999999999999999999988 7899999999888
Q ss_pred C-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCCCccceEEEEEEEEcccCCccccccccccccccccccccccc
Q 004208 112 V-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGSRARGELMFAIWFGTQADEAFSSAWHSDTAVVSGENIMNCR 190 (768)
Q Consensus 112 ~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 190 (768)
. +|+.+|++.++|..|....... .+-+.+. .+.+..|+|.+++.|.+..+....... +.+.
T Consensus 511 ~~sd~vvG~~~l~L~~L~~~~~~~----ne~~e~~--~~~k~vGrL~yDl~ffp~~e~k~~~~~-------s~e~----- 572 (1227)
T COG5038 511 FKSDKVVGSTQLDLALLHQNPVKK----NELYEFL--RNTKNVGRLTYDLRFFPVIEDKKELKG-------SVEP----- 572 (1227)
T ss_pred cCCcceeeeEEechHHhhhccccc----cceeeee--ccCccceEEEEeeeeecccCCcccccc-------ccCC-----
Confidence 8 9999999999999987664322 2233332 234467999999998876543211100 0000
Q ss_pred cceeecCCeeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-EEeeecccCCCCCCcccceEEEEecCCCCCcEEEEEE
Q 004208 191 SKVYVSPKLWYLRVNVIEAQDLVPKQRNRNPEVFIKAIFGNV-VLKTTVSAKKTVNPTWNEDLMFVAAEPFDDPLILTVE 269 (768)
Q Consensus 191 ~~~~~~p~~~~L~V~v~~a~~L~~~d~~~~~dpyV~v~lg~~-~~~T~~i~~~t~nP~wne~f~f~~~~~~~~~L~i~V~ 269 (768)
......|++.+++.++++|..... .....++++++.++ .+.|+.++. +.+|.||+++...+.+.....+.+.++
T Consensus 573 ---~ed~n~GI~k~tl~~~~~l~~~~~-~~~~~~a~l~~~~keV~st~~~k~-t~~~~wn~~~~~~v~~~~ns~~~~~~~ 647 (1227)
T COG5038 573 ---LEDSNTGILKVTLREVKALDELSS-KKDNKSAELYTNAKEVYSTGKLKF-TNHPSWNLQYNVLVTDRKNSSIKVVTF 647 (1227)
T ss_pred ---cccCCcceeEEEeeccccccCccc-cccceeEEEEecceEEeccceeee-ccCCceeeecceEeccCcceeEEEEec
Confidence 001235789999999999975432 22233488888665 555577776 999999999999998888888999998
Q ss_pred eccCCCCCceeEEEEEeccccccccCCCCCCceeEEcccCccCccccccccccceEEEEEecCCCcccccCcccccCccc
Q 004208 270 DKLGDNKEECLGRLVLPLSKAGKRFLPLPAAAIWYNLERNIANGEEKKDVRFASRICLRFSLDGGYHVFDEATNYSSDLR 349 (768)
Q Consensus 270 d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~g~~~~~~~~~g~i~l~v~~~~~~~~~~~~~~~~~~~~ 349 (768)
|.. ..+.+|....+|.++.. .......||++..+ .|+|.+...+.+-+...+.
T Consensus 648 d~~---~g~~i~~~~~~l~~li~---~t~dt~~~f~~~~~------------kg~I~~t~~W~Pi~~~~~~--------- 700 (1227)
T COG5038 648 DVQ---SGKVIATEGSTLPDLID---RTLDTFLVFPLRNP------------KGRIFITNYWKPIYNAGGS--------- 700 (1227)
T ss_pred ccc---cCceeccccccchHhhh---ccccceEEEEcCCC------------cceEEEEeccceeeccccc---------
Confidence 853 45688988888888773 34456789998865 4889888877543321111
Q ss_pred cccccCCCCeeeEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEecC-eeeeeccccCCCCCccccEEEEEEeCCCcEEEE
Q 004208 350 STMKQLWPPVIGVLELGILSAKELLPMKSRDGRGTTDAYCVAKYAN-KWVRTRTVVDSFDPKWNEQYTWEVYDPYTVITL 428 (768)
Q Consensus 350 ~~~~~l~~~~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~-~~~~T~~~~~t~nP~wne~~~~~v~~~~~~l~v 428 (768)
.+...+..++|.++|.|..|.+|... ...+++|||+++.+++ .++||-....++||.||+....++..+.+.+.+
T Consensus 701 -~s~~~~~~pIg~irv~v~~andl~n~---i~g~~~dPya~v~~n~~~k~rti~~~~~~npiw~~i~Yv~v~sk~~r~~l 776 (1227)
T COG5038 701 -SSKTVYDTPIGAIRVSVRKANDLRNE---IPGGKSDPYATVLVNNLVKYRTIYGSSTLNPIWNEILYVPVTSKNQRLTL 776 (1227)
T ss_pred -cceeeecCccceEEEEeehhhccccc---ccCcccccceEEEecceeEEEEecccCccccceeeeEEEEecCCccEEee
Confidence 11222357899999999999999863 7788999999999987 468999999999999999999999999999999
Q ss_pred EEEeCCCCCCCCCCCCceEEEEEeccccccC----ce---eeeeEeeeecCCCCcccccEEEEEEEEEec
Q 004208 429 VVFDNCHLHPGGAKDSRIGKVRIRLSTLETD----RI---YTHSYPLVALLPNGVKKMGEVQLAVRFTCS 491 (768)
Q Consensus 429 ~v~d~~~~~~~~~~d~~lG~~~i~l~~l~~~----~~---~~~~~~L~~~~~~g~~~~G~i~l~~~~~~~ 491 (768)
+++|....+ .|..||.+.|+++++... .. ++..-+.......|.+..|++.+..+|-+.
T Consensus 777 ~~~~~~~sg----ddr~lg~~~i~vsn~~~k~~~s~~~~~i~g~~~t~~l~~~~~~~~~tit~~~~f~p~ 842 (1227)
T COG5038 777 ECMDYEESG----DDRNLGEVNINVSNVSKKDEDSALMETIDGAEETGKLSLTGKKVKGTITYKCRFYPA 842 (1227)
T ss_pred eeecchhcc----ccceeceeeeeeeeeeecCCCcceEEeecCcccccccccccCCcceeEEEEEEEEee
Confidence 999999865 899999999999998762 11 111111111111244556899999888543
No 4
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=3.7e-25 Score=239.92 Aligned_cols=215 Identities=26% Similarity=0.405 Sum_probs=178.8
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeEEeeecccCCCCCCcccceEEEEecC--CCCCcEEEEEEeccC
Q 004208 199 LWYLRVNVIEAQDLVPKQRNRNPEVFIKAIFG---NVVLKTTVSAKKTVNPTWNEDLMFVAAE--PFDDPLILTVEDKLG 273 (768)
Q Consensus 199 ~~~L~V~v~~a~~L~~~d~~~~~dpyV~v~lg---~~~~~T~~i~~~t~nP~wne~f~f~~~~--~~~~~L~i~V~d~d~ 273 (768)
...|.|+|++|++|+.+|..|.+||||++++. ..+.+|++.++ ++||.|||+|.|.+.. .....|.+.|||.|.
T Consensus 166 ~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~-tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~dr 244 (421)
T KOG1028|consen 166 LNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRK-TLNPVFNETFRFEVPYEELSNRVLHLSVYDFDR 244 (421)
T ss_pred CCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeec-CcCCccccceEeecCHHHhccCEEEEEEEecCC
Confidence 34699999999999999977789999999993 46789999997 9999999999999643 356789999999999
Q ss_pred CCCCceeEEEEEeccccccccCCCCCCceeEEcccCccCccccccccccceEEEEEecCCCcccccCcccccCccccccc
Q 004208 274 DNKEECLGRLVLPLSKAGKRFLPLPAAAIWYNLERNIANGEEKKDVRFASRICLRFSLDGGYHVFDEATNYSSDLRSTMK 353 (768)
Q Consensus 274 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~g~~~~~~~~~g~i~l~v~~~~~~~~~~~~~~~~~~~~~~~~ 353 (768)
++++++||++.++|..+... .....|.+|.......+ ...|+|.+.+++
T Consensus 245 fsr~~~iGev~~~l~~~~~~----~~~~~w~~l~~~~~~~~-----~~~gel~~sL~Y---------------------- 293 (421)
T KOG1028|consen 245 FSRHDFIGEVILPLGEVDLL----STTLFWKDLQPSSTDSE-----ELAGELLLSLCY---------------------- 293 (421)
T ss_pred cccccEEEEEEecCcccccc----ccceeeeccccccCCcc-----cccceEEEEEEe----------------------
Confidence 99999999999998887632 23677999988642221 122899998885
Q ss_pred cCCCCeeeEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEe--cC---eeeeeccccCCCCCccccEEEEEEeC--C-CcE
Q 004208 354 QLWPPVIGVLELGILSAKELLPMKSRDGRGTTDAYCVAKY--AN---KWVRTRTVVDSFDPKWNEQYTWEVYD--P-YTV 425 (768)
Q Consensus 354 ~l~~~~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~--g~---~~~~T~~~~~t~nP~wne~~~~~v~~--~-~~~ 425 (768)
.+..|.|+|.|++|++|..+ +..+.+||||++.+ +. .+.+|.+.+++.||+|||+|.|.|.. . ...
T Consensus 294 ---~p~~g~ltv~v~kar~L~~~---~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~ 367 (421)
T KOG1028|consen 294 ---LPTAGRLTVVVIKARNLKSM---DVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVS 367 (421)
T ss_pred ---ecCCCeEEEEEEEecCCCcc---cCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhheeE
Confidence 24567899999999999986 67889999999888 33 34889999999999999999998873 2 348
Q ss_pred EEEEEEeCCCCCCCCCCCCceEEEEEeccc
Q 004208 426 ITLVVFDNCHLHPGGAKDSRIGKVRIRLST 455 (768)
Q Consensus 426 l~v~v~d~~~~~~~~~~d~~lG~~~i~l~~ 455 (768)
|.|+|||++.++ ++++||++.+....
T Consensus 368 l~l~V~d~d~~~----~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 368 LELTVWDHDTLG----SNDLIGRCILGSDS 393 (421)
T ss_pred EEEEEEEccccc----ccceeeEEEecCCC
Confidence 999999999976 77799999998775
No 5
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.92 E-value=3.9e-23 Score=233.50 Aligned_cols=412 Identities=21% Similarity=0.256 Sum_probs=288.6
Q ss_pred ccEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-eeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcCCCCCce
Q 004208 38 MEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGNY-KGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIVNGDF 116 (768)
Q Consensus 38 ~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~~-~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~~~d~~ 116 (768)
.|.+.+++.++++|.... .....-++++++.++ ...|+.++.+.+|.||+.+...+.+.....+.+.++|.. ..+.
T Consensus 578 ~GI~k~tl~~~~~l~~~~-~~~~~~~a~l~~~~keV~st~~~k~t~~~~wn~~~~~~v~~~~ns~~~~~~~d~~--~g~~ 654 (1227)
T COG5038 578 TGILKVTLREVKALDELS-SKKDNKSAELYTNAKEVYSTGKLKFTNHPSWNLQYNVLVTDRKNSSIKVVTFDVQ--SGKV 654 (1227)
T ss_pred cceeEEEeeccccccCcc-ccccceeEEEEecceEEeccceeeeccCCceeeecceEeccCcceeEEEEecccc--cCce
Confidence 489999999999996432 122223388888875 567788999999999999999999887889999999876 5678
Q ss_pred eEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCCCccceEEEEEEEEcccCCccccccccccccccccccccccccceeec
Q 004208 117 IGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGSRARGELMFAIWFGTQADEAFSSAWHSDTAVVSGENIMNCRSKVYVS 196 (768)
Q Consensus 117 lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (768)
+|+...+|.++..... ....||++.. +.|+|.++.++.+..... ...+..+..
T Consensus 655 i~~~~~~l~~li~~t~----dt~~~f~~~~-----~kg~I~~t~~W~Pi~~~~------------------~~~s~~~~~ 707 (1227)
T COG5038 655 IATEGSTLPDLIDRTL----DTFLVFPLRN-----PKGRIFITNYWKPIYNAG------------------GSSSKTVYD 707 (1227)
T ss_pred eccccccchHhhhccc----cceEEEEcCC-----CcceEEEEeccceeeccc------------------cccceeeec
Confidence 8988899988866532 2478999874 348899887665422110 012334456
Q ss_pred CCeeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-eEEeeecccCCCCCCcccceEEEEecCCCCCcEEEEEEeccCCC
Q 004208 197 PKLWYLRVNVIEAQDLVPKQRNRNPEVFIKAIFGN-VVLKTTVSAKKTVNPTWNEDLMFVAAEPFDDPLILTVEDKLGDN 275 (768)
Q Consensus 197 p~~~~L~V~v~~a~~L~~~d~~~~~dpyV~v~lg~-~~~~T~~i~~~t~nP~wne~f~f~~~~~~~~~L~i~V~d~d~~~ 275 (768)
+..|.++|.|..|.++......+++|||+++.+++ .++||-.... +.||.|++....++..+ .+.+.+.++|.+..+
T Consensus 708 ~pIg~irv~v~~andl~n~i~g~~~dPya~v~~n~~~k~rti~~~~-~~npiw~~i~Yv~v~sk-~~r~~l~~~~~~~sg 785 (1227)
T COG5038 708 TPIGAIRVSVRKANDLRNEIPGGKSDPYATVLVNNLVKYRTIYGSS-TLNPIWNEILYVPVTSK-NQRLTLECMDYEESG 785 (1227)
T ss_pred CccceEEEEeehhhcccccccCcccccceEEEecceeEEEEecccC-ccccceeeeEEEEecCC-ccEEeeeeecchhcc
Confidence 77899999999999999888889999999999976 5778877776 99999999988888775 445889999999999
Q ss_pred CCceeEEEEEeccccccccCCCCC--------------------------CceeEEcccCccC----------cc-----
Q 004208 276 KEECLGRLVLPLSKAGKRFLPLPA--------------------------AAIWYNLERNIAN----------GE----- 314 (768)
Q Consensus 276 ~d~~lG~~~i~l~~l~~~~~~~~~--------------------------~~~w~~L~~~~~~----------g~----- 314 (768)
.|..+|++.++++++..+.++... ..+.|+....... ++
T Consensus 786 ddr~lg~~~i~vsn~~~k~~~s~~~~~i~g~~~t~~l~~~~~~~~~tit~~~~f~p~~i~~s~ee~~~~~k~~~e~~~~~ 865 (1227)
T COG5038 786 DDRNLGEVNINVSNVSKKDEDSALMETIDGAEETGKLSLTGKKVKGTITYKCRFYPAVIVLSLEEVRYVDKVSSEKRKSE 865 (1227)
T ss_pred ccceeceeeeeeeeeeecCCCcceEEeecCcccccccccccCCcceeEEEEEEEEeecccCChHHhcchhhhhhHHHHhh
Confidence 999999999999988753211100 0011110000000 00
Q ss_pred -------c-------------------c-cc--------------ccccce--------------EEEEEecCC-Ccccc
Q 004208 315 -------E-------------------K-KD--------------VRFASR--------------ICLRFSLDG-GYHVF 338 (768)
Q Consensus 315 -------~-------------------~-~~--------------~~~~g~--------------i~l~v~~~~-~~~~~ 338 (768)
. . .+ +..+|- +++.+.++. +++..
T Consensus 866 ~~~~~l~ek~~~~~D~~~~~~e~~~v~~~~d~~~~k~k~~lne~lq~~sgv~~i~i~~g~l~~~~~~l~~f~Dd~~~~~i 945 (1227)
T COG5038 866 KRKSALDEKTISLVDKEDSVEESIEVEELTDMYSLKPKLDLNEALQYKSGVLGIQILSGELPDPGQYLQIFFDDASHPQI 945 (1227)
T ss_pred hhhcccCccccchhccccchhcceeeccccchhhcchhhhhhhhhcccCCceEEEEEEeecCCcceEEEEEecCCCCcee
Confidence 0 0 00 000111 122222222 11110
Q ss_pred cCcc-------------------ccc------------Ccc-------------------------------------cc
Q 004208 339 DEAT-------------------NYS------------SDL-------------------------------------RS 350 (768)
Q Consensus 339 ~~~~-------------------~~~------------~~~-------------------------------------~~ 350 (768)
..+. .++ ++- .|
T Consensus 946 ~s~~~~t~~~~~~~~g~~~ireL~~s~~tfrv~K~a~~~dk~v~e~t~~t~~lvs~~~~kp~~ln~~g~~~~~v~~~~tP 1025 (1227)
T COG5038 946 VSSKAPTRGERNGESGDTFIRELEYSETTFRVTKNAKKSDKVVCEVTLPTLDLVSNAYEKPSSLNFPGSAKVLVQVSYTP 1025 (1227)
T ss_pred eccCCcccccccchhhhhhhhhhccceEEEEeccCCcccCceeeecccchhHHHHHhhCCCcEEecCCCceEEEEEEEee
Confidence 0000 000 000 00
Q ss_pred ccccCC----CCeeeEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEecCe-eeeeccccCCCCCccccEEEEEEeC-CCc
Q 004208 351 TMKQLW----PPVIGVLELGILSAKELLPMKSRDGRGTTDAYCVAKYANK-WVRTRTVVDSFDPKWNEQYTWEVYD-PYT 424 (768)
Q Consensus 351 ~~~~l~----~~~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~~-~~~T~~~~~t~nP~wne~~~~~v~~-~~~ 424 (768)
....+. -...|.|.|.+.+|.||+.. |.+|.+||||++.++++ .++|+++++++||.|||.+..+|.. ..+
T Consensus 1026 v~~~l~~~emv~nsG~l~I~~~~~~nl~~~---d~ng~sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~~r~~D 1102 (1227)
T COG5038 1026 VPVKLPPVEMVENSGYLTIMLRSGENLPSS---DENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNRVKD 1102 (1227)
T ss_pred cccccCcceeecccCcEEEEEeccCCCccc---ccCCCCCceEEEEecceecccccchhccCCCCccccceEeeeccccc
Confidence 000000 12468999999999999994 78899999999999886 7999999999999999999999985 567
Q ss_pred EEEEEEEeCCCCCCCCCCCCceEEEEEeccccccCceeeeeEeeeecCCCCcccccEEEEEEEEEe
Q 004208 425 VITLVVFDNCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPLVALLPNGVKKMGEVQLAVRFTC 490 (768)
Q Consensus 425 ~l~v~v~d~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~~ 490 (768)
.+++.|+|+|. +++++.||.+.++|+.+..+..++...+|.+.. -....|.+++...+..
T Consensus 1103 ~~~i~v~Dwd~----~~knd~lg~~~idL~~l~~~~~~n~~i~ldgk~--~~~~~g~~~~~~~~r~ 1162 (1227)
T COG5038 1103 VLTINVNDWDS----GEKNDLLGTAEIDLSKLEPGGTTNSNIPLDGKT--FIVLDGTLHPGFNFRS 1162 (1227)
T ss_pred eEEEEEeeccc----CCCccccccccccHhhcCcCCccceeeeccCcc--eEecccEeecceecch
Confidence 99999999998 569999999999999999998888888886543 1234467776666643
No 6
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.89 E-value=7e-23 Score=219.41 Aligned_cols=251 Identities=18% Similarity=0.300 Sum_probs=199.6
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-eEEeeecccCCCCCCcccceEEEEecCCCCCcEEEEEEeccCCCCCce
Q 004208 201 YLRVNVIEAQDLVPKQRNRNPEVFIKAIFGN-VVLKTTVSAKKTVNPTWNEDLMFVAAEPFDDPLILTVEDKLGDNKEEC 279 (768)
Q Consensus 201 ~L~V~v~~a~~L~~~d~~~~~dpyV~v~lg~-~~~~T~~i~~~t~nP~wne~f~f~~~~~~~~~L~i~V~d~d~~~~d~~ 279 (768)
.|.|.|.+|+||+..+..|.+||||.|.+.+ ...||.++.+ ++.|.|+|.|.|.+...+ ..|.|.|||+| .++|+.
T Consensus 6 sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~k-sL~PF~gEe~~~~iP~~F-~~l~fYv~D~d-~~~D~~ 82 (800)
T KOG2059|consen 6 SLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEK-SLCPFFGEEFYFEIPRTF-RYLSFYVWDRD-LKRDDI 82 (800)
T ss_pred ceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhh-hcCCccccceEEecCcce-eeEEEEEeccc-cccccc
Confidence 4899999999999999999999999999965 5789999998 999999999999987644 36999999999 899999
Q ss_pred eEEEEEeccccccccCCCCCCceeEEcccCccCccccccccccceEEEEEecCCCcccccCcccccCccccccccCCCCe
Q 004208 280 LGRLVLPLSKAGKRFLPLPAAAIWYNLERNIANGEEKKDVRFASRICLRFSLDGGYHVFDEATNYSSDLRSTMKQLWPPV 359 (768)
Q Consensus 280 lG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~g~~~~~~~~~g~i~l~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 359 (768)
||.+.|.=.+|... +..+.|+.|+.-..+ ....|+|++++.+.+... +
T Consensus 83 IGKvai~re~l~~~----~~~d~W~~L~~VD~d------sEVQG~v~l~l~~~e~~~---~------------------- 130 (800)
T KOG2059|consen 83 IGKVAIKREDLHMY----PGKDTWFSLQPVDPD------SEVQGKVHLELALTEAIQ---S------------------- 130 (800)
T ss_pred cceeeeeHHHHhhC----CCCccceeccccCCC------hhhceeEEEEEEeccccC---C-------------------
Confidence 99999988887743 368899999987543 357899999998744211 0
Q ss_pred eeEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEecCee----eeeccccCCCCCccccEEEEEEeCC-------------
Q 004208 360 IGVLELGILSAKELLPMKSRDGRGTTDAYCVAKYANKW----VRTRTVVDSFDPKWNEQYTWEVYDP------------- 422 (768)
Q Consensus 360 ~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~~~----~~T~~~~~t~nP~wne~~~~~v~~~------------- 422 (768)
..+..+++.++++.+ -.++.+||||++...+.+ .+|.+.++|.+|.|+|.|.|.+...
T Consensus 131 -~~~~c~~L~~r~~~P----~~~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~ 205 (800)
T KOG2059|consen 131 -SGLVCHVLKTRQGLP----IINGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEE 205 (800)
T ss_pred -CcchhhhhhhcccCc----eeCCCCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCccc
Confidence 014445566666666 245569999999997655 4999999999999999999988633
Q ss_pred ---CcEEEEEEEeCCCCCCCCCCCCceEEEEEeccccccCceeeeeEeeeecCCCC----cccccEEEEEEEEEeccch
Q 004208 423 ---YTVITLVVFDNCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPLVALLPNG----VKKMGEVQLAVRFTCSSFV 494 (768)
Q Consensus 423 ---~~~l~v~v~d~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g----~~~~G~i~l~~~~~~~~~~ 494 (768)
...|.|.+||+.... .+++++|.+++++..+........||-|.....+. ..-.|.+++.+++..++++
T Consensus 206 e~~~l~irv~lW~~~~~~---~~~~FlGevrv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~~D~Vl 281 (800)
T KOG2059|consen 206 EDDMLEIRVDLWNDLNLV---INDVFLGEVRVPVDVLRQKSSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYTEDHVL 281 (800)
T ss_pred CCceeeEEEeeccchhhh---hhhhhceeEEeehhhhhhccCccceEEEecCCCcccCCCCCCccceeeeEEeeeceec
Confidence 237899999954432 26999999999999988766778999997653211 1235899999999877654
No 7
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.89 E-value=2e-22 Score=188.13 Aligned_cols=150 Identities=60% Similarity=0.965 Sum_probs=128.9
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEeeecccCCCCCCcccceEEEEecCCCCCcEEEEEEeccCCCCCcee
Q 004208 201 YLRVNVIEAQDLVPKQRNRNPEVFIKAIFGNVVLKTTVSAKKTVNPTWNEDLMFVAAEPFDDPLILTVEDKLGDNKEECL 280 (768)
Q Consensus 201 ~L~V~v~~a~~L~~~d~~~~~dpyV~v~lg~~~~~T~~i~~~t~nP~wne~f~f~~~~~~~~~L~i~V~d~d~~~~d~~l 280 (768)
+|+|+|++|++|+..+.+|.+||||++.++++..+|+++.+++.||+|||.|.|.+.++..+.+.|+|+|++..+++++|
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~l 80 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPL 80 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeE
Confidence 38999999999999999999999999999999999999876479999999999999877677899999999988889999
Q ss_pred EEEEEeccccccccCCCCCCceeEEcccCccCccccccccccceEEEEEecCCCcccccCcccccCcccc
Q 004208 281 GRLVLPLSKAGKRFLPLPAAAIWYNLERNIANGEEKKDVRFASRICLRFSLDGGYHVFDEATNYSSDLRS 350 (768)
Q Consensus 281 G~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~g~~~~~~~~~g~i~l~v~~~~~~~~~~~~~~~~~~~~~ 350 (768)
|++.++|+++....+.+....+||+|.+..+..+..+..+..|+|++++++.+.+++++++.+|++|++|
T Consensus 81 G~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~~~~~~~~~~~~~~~~~ 150 (150)
T cd04019 81 GRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGGYHVLDESTHYSSDLRP 150 (150)
T ss_pred EEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecCcceEeecccccccCCCC
Confidence 9999999998754334566799999998743111223446789999999999999999999999998865
No 8
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.89 E-value=9.8e-23 Score=218.33 Aligned_cols=249 Identities=22% Similarity=0.274 Sum_probs=198.1
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-eeeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcCCCCCcee
Q 004208 39 EFLYVRIVRARDLQVNQVTGTCDPYVEVKIGN-YKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIVNGDFI 117 (768)
Q Consensus 39 ~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~-~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~~~d~~l 117 (768)
..|.|+|.+|+||++.+..|++||||.|.++. ...||.++.+++.|-|.|+|+|.+... -..|.|-|||.|..+|+.|
T Consensus 5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~~-F~~l~fYv~D~d~~~D~~I 83 (800)
T KOG2059|consen 5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPRT-FRYLSFYVWDRDLKRDDII 83 (800)
T ss_pred cceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCcc-eeeEEEEEecccccccccc
Confidence 46999999999999999999999999999997 578999999999999999999998765 6789999999993399999
Q ss_pred EEEEEcCCCCCCCCCCCCCCCCeEEEcccCC-CCccceEEEEEEEEcccCCccccccccccccccccccccccccceeec
Q 004208 118 GKIKIDMPDIPKRVPPDSPLAPEWKRLEAKD-GSRARGELMFAIWFGTQADEAFSSAWHSDTAVVSGENIMNCRSKVYVS 196 (768)
Q Consensus 118 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~-~~~~~G~i~l~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (768)
|++.|.=++|.... ....|+.|.... .+++.|+|++++.+.....+
T Consensus 84 GKvai~re~l~~~~-----~~d~W~~L~~VD~dsEVQG~v~l~l~~~e~~~~---------------------------- 130 (800)
T KOG2059|consen 84 GKVAIKREDLHMYP-----GKDTWFSLQPVDPDSEVQGKVHLELALTEAIQS---------------------------- 130 (800)
T ss_pred ceeeeeHHHHhhCC-----CCccceeccccCCChhhceeEEEEEEeccccCC----------------------------
Confidence 99999988886542 368999998775 34589999999877532210
Q ss_pred CCeeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe----EEeeecccCCCCCCcccceEEEEecCC-------------
Q 004208 197 PKLWYLRVNVIEAQDLVPKQRNRNPEVFIKAIFGNV----VLKTTVSAKKTVNPTWNEDLMFVAAEP------------- 259 (768)
Q Consensus 197 p~~~~L~V~v~~a~~L~~~d~~~~~dpyV~v~lg~~----~~~T~~i~~~t~nP~wne~f~f~~~~~------------- 259 (768)
..+.+.+++++++.+.+. +.+|||+++...+. ..+|++.++ |.+|.|+|.|.|.+...
T Consensus 131 ---~~~~c~~L~~r~~~P~~~-~~~dp~~~v~~~g~~~~~~~~T~~~kk-t~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~ 205 (800)
T KOG2059|consen 131 ---SGLVCHVLKTRQGLPIIN-GQCDPFARVTLCGPSKLKEKKTKVKKK-TTNPQFDEVFYFEVTREESYSKKSLFMPEE 205 (800)
T ss_pred ---CcchhhhhhhcccCceeC-CCCCcceEEeecccchhhccccceeee-ccCcchhhheeeeeccccccccchhcCccc
Confidence 125566677777776654 45999999999654 358999887 99999999999987654
Q ss_pred --CCCcEEEEEEe-ccCCCCCceeEEEEEeccccccccCCCCCCceeEEcccCccCccccccccccceEEEEEec
Q 004208 260 --FDDPLILTVED-KLGDNKEECLGRLVLPLSKAGKRFLPLPAAAIWYNLERNIANGEEKKDVRFASRICLRFSL 331 (768)
Q Consensus 260 --~~~~L~i~V~d-~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~g~~~~~~~~~g~i~l~v~~ 331 (768)
..-.|++.+|+ ++....++|+|++.+++..+.. ......||.|++.. .|++..++.-.|.+++.+++
T Consensus 206 e~~~l~irv~lW~~~~~~~~~~FlGevrv~v~~~~~----~s~p~~W~~Lqp~~-~g~~~~~~~~lGslrl~v~y 275 (800)
T KOG2059|consen 206 EDDMLEIRVDLWNDLNLVINDVFLGEVRVPVDVLRQ----KSSPAAWYYLQPRP-NGEKSSDGGDLGSLRLNVTY 275 (800)
T ss_pred CCceeeEEEeeccchhhhhhhhhceeEEeehhhhhh----ccCccceEEEecCC-CcccCCCCCCccceeeeEEe
Confidence 22357788888 5666679999999999988762 23467899999873 34444455667888888875
No 9
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.87 E-value=1.1e-21 Score=176.55 Aligned_cols=119 Identities=67% Similarity=1.114 Sum_probs=106.3
Q ss_pred EEEEEEEecC---CCCCCCCCCCCCcCcEEEEEecCeeeeeccccCCCCCccccEEEEEEeCCCcEEEEEEEeCCCCC--
Q 004208 363 LELGILSAKE---LLPMKSRDGRGTTDAYCVAKYANKWVRTRTVVDSFDPKWNEQYTWEVYDPYTVITLVVFDNCHLH-- 437 (768)
Q Consensus 363 l~v~v~~a~~---L~~~~~~~~~g~~dpyv~v~~g~~~~~T~~~~~t~nP~wne~~~~~v~~~~~~l~v~v~d~~~~~-- 437 (768)
|+|+|++|+| |.. .|..|++||||++++|++++||++++++.||+|||+|.|.+.++...|.|+|||++.++
T Consensus 2 L~v~v~~A~~~~~l~~---~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~~~ 78 (126)
T cd08379 2 LEVGILGAQGLDVLRA---KDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSHWK 78 (126)
T ss_pred eEEEEEEeECCccccc---cccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCCCCEEEEEEEECCCcccc
Confidence 8999999999 555 47889999999999999999999999999999999999999988889999999998741
Q ss_pred CCCCCCCceEEEEEeccccccCceeeeeEeeeecCCCCcccccEEEE
Q 004208 438 PGGAKDSRIGKVRIRLSTLETDRIYTHSYPLVALLPNGVKKMGEVQL 484 (768)
Q Consensus 438 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l 484 (768)
....+|++||++.++|+++..+..+..||||....+++.++.|+|++
T Consensus 79 ~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 79 EAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred ccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCCCCCccCCcEEEe
Confidence 00137999999999999999999899999999888778888899986
No 10
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.87 E-value=1.2e-21 Score=175.12 Aligned_cols=119 Identities=21% Similarity=0.368 Sum_probs=104.6
Q ss_pred eeEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEecCeeeeeccccC-CCCCccccEEEEEEeCCCcEEEEEEEeCCCCCC
Q 004208 360 IGVLELGILSAKELLPMKSRDGRGTTDAYCVAKYANKWVRTRTVVD-SFDPKWNEQYTWEVYDPYTVITLVVFDNCHLHP 438 (768)
Q Consensus 360 ~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~~~~~T~~~~~-t~nP~wne~~~~~v~~~~~~l~v~v~d~~~~~~ 438 (768)
.|.|+|+|++|++++.. + .|++||||++.+|++++||+++.+ +.||.|||+|.|.+.+....|.|+|||++.++
T Consensus 1 ~g~L~v~v~~Ak~l~~~---~-~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~~~- 75 (121)
T cd04016 1 VGRLSITVVQAKLVKNY---G-LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAFT- 75 (121)
T ss_pred CcEEEEEEEEccCCCcC---C-CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCCCc-
Confidence 37899999999998763 3 689999999999999999999976 79999999999999876678999999999976
Q ss_pred CCCCCCceEEEEEecc-ccccCceeeeeEeeeecCCCCcccccEEEEEEEE
Q 004208 439 GGAKDSRIGKVRIRLS-TLETDRIYTHSYPLVALLPNGVKKMGEVQLAVRF 488 (768)
Q Consensus 439 ~~~~d~~lG~~~i~l~-~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 488 (768)
+|++||.+.|+|. .+..++....||+|.... +..+.|+|+|.++|
T Consensus 76 ---~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~~--~~~~~g~i~l~l~y 121 (121)
T cd04016 76 ---MDERIAWTHITIPESVFNGETLDDWYSLSGKQ--GEDKEGMINLVFSY 121 (121)
T ss_pred ---CCceEEEEEEECchhccCCCCccccEeCcCcc--CCCCceEEEEEEeC
Confidence 8999999999996 688888889999997643 44567999999985
No 11
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.86 E-value=4.7e-21 Score=171.26 Aligned_cols=117 Identities=20% Similarity=0.298 Sum_probs=102.0
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeeecC-CCCCeeeeEEEEEeccCCCceEEEEEEEcCCC-CCce
Q 004208 39 EFLYVRIVRARDLQVNQVTGTCDPYVEVKIGNYKGTTIPFEK-KLNPEWNQVFAFTKERLQAISVELLVKDKMIV-NGDF 116 (768)
Q Consensus 39 ~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~-t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~~-~d~~ 116 (768)
|.|.|+|++|++|+..+ .|++||||++.+++++.+|+++.+ +.||+|||+|.|.+.+. ...|.|+|||+|.+ +|++
T Consensus 2 g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~-~~~l~~~V~d~d~~~~dd~ 79 (121)
T cd04016 2 GRLSITVVQAKLVKNYG-LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEG-VDSIYIEIFDERAFTMDER 79 (121)
T ss_pred cEEEEEEEEccCCCcCC-CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCC-CcEEEEEEEeCCCCcCCce
Confidence 78999999999988766 789999999999999999999865 79999999999998764 46799999999998 8999
Q ss_pred eEEEEEcCC-CCCCCCCCCCCCCCeEEEcccCCCCccceEEEEEEEE
Q 004208 117 IGKIKIDMP-DIPKRVPPDSPLAPEWKRLEAKDGSRARGELMFAIWF 162 (768)
Q Consensus 117 lG~~~i~l~-~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~i~~ 162 (768)
||++.+++. .+..+. ....|++|.+..+....|+|+++++|
T Consensus 80 iG~~~i~l~~~~~~g~-----~~~~W~~L~~~~~~~~~g~i~l~l~y 121 (121)
T cd04016 80 IAWTHITIPESVFNGE-----TLDDWYSLSGKQGEDKEGMINLVFSY 121 (121)
T ss_pred EEEEEEECchhccCCC-----CccccEeCcCccCCCCceEEEEEEeC
Confidence 999999996 455442 25899999987766678999999875
No 12
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.86 E-value=4.3e-21 Score=173.12 Aligned_cols=121 Identities=59% Similarity=1.063 Sum_probs=108.3
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcCCCCCceeEE
Q 004208 40 FLYVRIVRARDLQVNQVTGTCDPYVEVKIGNYKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIVNGDFIGK 119 (768)
Q Consensus 40 ~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~~~d~~lG~ 119 (768)
+|.|+|++|+||+.. .+||||++.+++++.+|++++++.||+|||+|.|.+..+....|.|+|||++..++++||+
T Consensus 1 ~L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~~~~~lG~ 76 (121)
T cd08378 1 YLYVRVVKARGLPAN----SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKAKDDFLGG 76 (121)
T ss_pred CEEEEEEEecCCCcc----cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCCcCceeee
Confidence 489999999999876 7899999999999999999999999999999999988776889999999999878999999
Q ss_pred EEEcCCCCCCCCCCCCCCCCeEEEcccCCCCccceEEEEEEEEcc
Q 004208 120 IKIDMPDIPKRVPPDSPLAPEWKRLEAKDGSRARGELMFAIWFGT 164 (768)
Q Consensus 120 ~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~i~~~~ 164 (768)
+.+++.++......+.....+||+|.+..+.+..|+|.+++||++
T Consensus 77 ~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~~~~G~i~l~~~~~~ 121 (121)
T cd08378 77 VCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVGGELMLAVWFGT 121 (121)
T ss_pred EEEEhHhCcCCCCCCCCCCcceEEccCCCCCccceEEEEEEEecC
Confidence 999999997665444555689999998877668899999999973
No 13
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.85 E-value=1e-20 Score=176.67 Aligned_cols=137 Identities=23% Similarity=0.383 Sum_probs=117.2
Q ss_pred EEEEEEEecCCCCCCCCCCCCCcCcEEEEEecCeeeeeccccC-CCCCccccEEEEEEeCCC-cEEEEEEEeCCCCCCCC
Q 004208 363 LELGILSAKELLPMKSRDGRGTTDAYCVAKYANKWVRTRTVVD-SFDPKWNEQYTWEVYDPY-TVITLVVFDNCHLHPGG 440 (768)
Q Consensus 363 l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~~~~~T~~~~~-t~nP~wne~~~~~v~~~~-~~l~v~v~d~~~~~~~~ 440 (768)
|+|+|++|+||+++ +..|.+||||++++|++..+|+++.+ +.||.|||.|.|.+.++. +.+.|+|+|++.++
T Consensus 2 L~V~Vi~A~~L~~~---d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~--- 75 (150)
T cd04019 2 LRVTVIEAQDLVPS---DKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPN--- 75 (150)
T ss_pred EEEEEEEeECCCCC---CCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCC---
Confidence 89999999999985 67789999999999999999999976 699999999999998764 58999999998754
Q ss_pred CCCCceEEEEEeccccccC----ceeeeeEeeeecCC-----CCcccccEEEEEEEEEec-cchhhhhhhcCCCCC
Q 004208 441 AKDSRIGKVRIRLSTLETD----RIYTHSYPLVALLP-----NGVKKMGEVQLAVRFTCS-SFVNLLQTYSQPLLP 506 (768)
Q Consensus 441 ~~d~~lG~~~i~l~~l~~~----~~~~~~~~L~~~~~-----~g~~~~G~i~l~~~~~~~-~~~~~~~~~~~~~~p 506 (768)
+|++||++.|+|+++..+ .....||+|..... +..+..|+|+|+++|.+. ++.....+|.++++|
T Consensus 76 -~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~~~~~~~~~~~~~~~~~ 150 (150)
T cd04019 76 -KDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGGYHVLDESTHYSSDLRP 150 (150)
T ss_pred -CCCeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecCcceEeecccccccCCCC
Confidence 789999999999998753 45689999986532 234567999999999977 677888888887765
No 14
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.83 E-value=3.5e-20 Score=169.25 Aligned_cols=117 Identities=25% Similarity=0.390 Sum_probs=101.8
Q ss_pred EEEEEEEecCCCCCCCCCCCCCcCcEEEEEecCeeeeeccccCCCCCccccEEEEEEeC------CCcEEEEEEEeCCCC
Q 004208 363 LELGILSAKELLPMKSRDGRGTTDAYCVAKYANKWVRTRTVVDSFDPKWNEQYTWEVYD------PYTVITLVVFDNCHL 436 (768)
Q Consensus 363 l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~~~~~T~~~~~t~nP~wne~~~~~v~~------~~~~l~v~v~d~~~~ 436 (768)
++|+|++|+||+.+ +..|.+||||+++++++.+||++++++.||.|||.|.|.+.+ ....|.+.|||++.+
T Consensus 1 ~~V~V~~A~~L~~~---d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~ 77 (126)
T cd08682 1 VQVTVLQARGLLCK---GKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLL 77 (126)
T ss_pred CEEEEEECcCCcCC---CCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEcccc
Confidence 57999999999985 677899999999999999999999999999999999999987 356899999999986
Q ss_pred CCCCCCCCceEEEEEeccccc--cCceeeeeEeeeecCCCCcccccEEEEEE
Q 004208 437 HPGGAKDSRIGKVRIRLSTLE--TDRIYTHSYPLVALLPNGVKKMGEVQLAV 486 (768)
Q Consensus 437 ~~~~~~d~~lG~~~i~l~~l~--~~~~~~~~~~L~~~~~~g~~~~G~i~l~~ 486 (768)
+ +|++||++.|+|+++. .+.....||+|........+..|+|++++
T Consensus 78 ~----~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~ 125 (126)
T cd08682 78 G----LDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDI 125 (126)
T ss_pred C----CCceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEe
Confidence 5 7999999999999988 56667899999865443445679999887
No 15
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.83 E-value=1.9e-20 Score=169.72 Aligned_cols=118 Identities=31% Similarity=0.525 Sum_probs=100.0
Q ss_pred eeeEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEecCeeeeeccccCCCCCccccEEEEEEeCCCcEEEEEEEeCCCCCC
Q 004208 359 VIGVLELGILSAKELLPMKSRDGRGTTDAYCVAKYANKWVRTRTVVDSFDPKWNEQYTWEVYDPYTVITLVVFDNCHLHP 438 (768)
Q Consensus 359 ~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~~~~~T~~~~~t~nP~wne~~~~~v~~~~~~l~v~v~d~~~~~~ 438 (768)
..|.|+|.|.+|.||.. +|..+++||||++++|+++.||+++++++||+|||.|+|.+.|++..|+++|||+|.++
T Consensus 4 ~vGLL~v~v~~g~~L~~---rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~~~~lkv~VyD~D~fs- 79 (168)
T KOG1030|consen 4 LVGLLRVRVKRGKNLAI---RDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDPNTPLKVTVYDKDTFS- 79 (168)
T ss_pred cceEEEEEEEeecCeee---eccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCCCceEEEEEEeCCCCC-
Confidence 57899999999999988 47779999999999999999999999999999999999999999999999999999977
Q ss_pred CCCCCCceEEEEEeccccccCceeeeeEeeeecCCCCcccccEEEEEEE
Q 004208 439 GGAKDSRIGKVRIRLSTLETDRIYTHSYPLVALLPNGVKKMGEVQLAVR 487 (768)
Q Consensus 439 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~ 487 (768)
.||++|.+.|+|..+..... .+| |....+.|... |++.++..
T Consensus 80 ---~dD~mG~A~I~l~p~~~~~~--~~~-l~~~~~~gt~~-~~v~~s~d 121 (168)
T KOG1030|consen 80 ---SDDFMGEATIPLKPLLEAQK--MDY-LKLELLTGTAI-GKVLLSRD 121 (168)
T ss_pred ---cccccceeeeccHHHHHHhh--hhc-cccccCCCcEe-eEEEeccc
Confidence 99999999999999988763 344 44333333333 55554443
No 16
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.83 E-value=7.4e-20 Score=167.10 Aligned_cols=117 Identities=27% Similarity=0.484 Sum_probs=101.0
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeeecCCCCCeeeeEEEEEecc-----CCCceEEEEEEEcCCC-CC
Q 004208 41 LYVRIVRARDLQVNQVTGTCDPYVEVKIGNYKGTTIPFEKKLNPEWNQVFAFTKER-----LQAISVELLVKDKMIV-NG 114 (768)
Q Consensus 41 L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~Wne~f~f~~~~-----~~~~~L~i~V~d~~~~-~d 114 (768)
++|+|++|+||+..+..|.+||||+|++++++.+|+++++++||+|||+|.|.+.. .....|.|+|||++.+ +|
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d 80 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLD 80 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCC
Confidence 57999999999999989999999999999999999999999999999999999866 3567899999999988 89
Q ss_pred ceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCCC--ccceEEEEEE
Q 004208 115 DFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGS--RARGELMFAI 160 (768)
Q Consensus 115 ~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~--~~~G~i~l~i 160 (768)
++||++.|+|.++.... .....+|++|.+..+. +..|+|++++
T Consensus 81 ~~iG~~~i~l~~l~~~~---~~~~~~W~~L~~~~~~~~~~~Gei~l~~ 125 (126)
T cd08682 81 KFLGQVSIPLNDLDEDK---GRRRTRWFKLESKPGKDDKERGEIEVDI 125 (126)
T ss_pred ceeEEEEEEHHHhhccC---CCcccEEEECcCCCCCCccccceEEEEe
Confidence 99999999999986321 1235799999865542 3679999876
No 17
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.82 E-value=5.4e-20 Score=166.71 Aligned_cols=94 Identities=32% Similarity=0.545 Sum_probs=89.6
Q ss_pred ccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcCCC-CC
Q 004208 36 EQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGNYKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIV-NG 114 (768)
Q Consensus 36 ~~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~~-~d 114 (768)
...|.|+|+|++|.||..+|..++|||||++++|+++.+|+++++++||+|||+|.|.+.+. ...|.++|||+|.+ +|
T Consensus 3 ~~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~-~~~lkv~VyD~D~fs~d 81 (168)
T KOG1030|consen 3 MLVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDP-NTPLKVTVYDKDTFSSD 81 (168)
T ss_pred ccceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCC-CceEEEEEEeCCCCCcc
Confidence 45789999999999999999889999999999999999999999999999999999999998 78999999999999 99
Q ss_pred ceeEEEEEcCCCCCCC
Q 004208 115 DFIGKIKIDMPDIPKR 130 (768)
Q Consensus 115 ~~lG~~~i~l~~l~~~ 130 (768)
|+||.|+|++..+...
T Consensus 82 D~mG~A~I~l~p~~~~ 97 (168)
T KOG1030|consen 82 DFMGEATIPLKPLLEA 97 (168)
T ss_pred cccceeeeccHHHHHH
Confidence 9999999999998765
No 18
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.81 E-value=2.8e-19 Score=162.09 Aligned_cols=118 Identities=24% Similarity=0.375 Sum_probs=105.6
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-eeeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcCCC-CCcee
Q 004208 40 FLYVRIVRARDLQVNQVTGTCDPYVEVKIGN-YKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIV-NGDFI 117 (768)
Q Consensus 40 ~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~-~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~~-~d~~l 117 (768)
+|+|+|++|++|+..|..|.+||||++++++ ...+|+++.++.||+|||+|.|.+.+. ...|.|+|||++.. +|++|
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~-~~~l~~~v~D~d~~~~~~~i 79 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDV-TQPLYIKVFDYDRGLTDDFM 79 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCC-CCeEEEEEEeCCCCCCCcce
Confidence 4899999999999999899999999999998 678999999999999999999998776 57899999999998 99999
Q ss_pred EEEEEcCCCCCCCCCCCCCCCCeEEEcccCCCCccceEEEEEEEEc
Q 004208 118 GKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGSRARGELMFAIWFG 163 (768)
Q Consensus 118 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~i~~~ 163 (768)
|++.+++.++..+.. ...|++|.+..+.+..|+|.+.+.+.
T Consensus 80 G~~~~~l~~l~~~~~-----~~~~~~L~~~~~~~~~G~l~l~~~~~ 120 (121)
T cd04042 80 GSAFVDLSTLELNKP-----TEVKLKLEDPNSDEDLGYISLVVTLT 120 (121)
T ss_pred EEEEEEHHHcCCCCC-----eEEEEECCCCCCccCceEEEEEEEEC
Confidence 999999999986632 46899998876655789999998875
No 19
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.81 E-value=2.9e-19 Score=161.99 Aligned_cols=118 Identities=25% Similarity=0.406 Sum_probs=105.8
Q ss_pred EEEEEEEecCCCCCCCCCCCCCcCcEEEEEecC-eeeeeccccCCCCCccccEEEEEEeCCCcEEEEEEEeCCCCCCCCC
Q 004208 363 LELGILSAKELLPMKSRDGRGTTDAYCVAKYAN-KWVRTRTVVDSFDPKWNEQYTWEVYDPYTVITLVVFDNCHLHPGGA 441 (768)
Q Consensus 363 l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~-~~~~T~~~~~t~nP~wne~~~~~v~~~~~~l~v~v~d~~~~~~~~~ 441 (768)
|+|+|++|+||+.. +..|.+||||++++++ ..++|+++.++.||.|||.|.|.+.++.+.|.|+|||++.++
T Consensus 2 L~v~v~~a~~L~~~---d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~---- 74 (121)
T cd04042 2 LDIHLKEGRNLAAR---DRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGL---- 74 (121)
T ss_pred eEEEEEEeeCCCCc---CCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCCCCeEEEEEEeCCCCC----
Confidence 88999999999985 6678999999999987 679999999999999999999999887889999999999865
Q ss_pred CCCceEEEEEeccccccCceeeeeEeeeecCCCCcccccEEEEEEEEE
Q 004208 442 KDSRIGKVRIRLSTLETDRIYTHSYPLVALLPNGVKKMGEVQLAVRFT 489 (768)
Q Consensus 442 ~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~ 489 (768)
+|++||++.++++++..+.....|++|.+.+ +.+..|+|++.++++
T Consensus 75 ~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~~--~~~~~G~l~l~~~~~ 120 (121)
T cd04042 75 TDDFMGSAFVDLSTLELNKPTEVKLKLEDPN--SDEDLGYISLVVTLT 120 (121)
T ss_pred CCcceEEEEEEHHHcCCCCCeEEEEECCCCC--CccCceEEEEEEEEC
Confidence 8999999999999999888888999997543 345689999999984
No 20
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.81 E-value=2.2e-19 Score=161.48 Aligned_cols=112 Identities=23% Similarity=0.297 Sum_probs=97.9
Q ss_pred EEEEEEEeec---CCCCCCCCCCCcEEEEEECCeeeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcCCC-----
Q 004208 41 LYVRIVRARD---LQVNQVTGTCDPYVEVKIGNYKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIV----- 112 (768)
Q Consensus 41 L~V~i~~a~~---L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~~----- 112 (768)
|.|+|++|+| |..+|..|++||||++++++++.+|+++++++||+|||+|.|.+.+. ...|.|+|||++..
T Consensus 2 L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~-~~~l~v~V~d~d~~~~~~~ 80 (126)
T cd08379 2 LEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDP-CTVLTVGVFDNSQSHWKEA 80 (126)
T ss_pred eEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCC-CCEEEEEEEECCCcccccc
Confidence 8999999999 88889999999999999999999999999999999999999999775 46899999999885
Q ss_pred --CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCC--CccceEEEE
Q 004208 113 --NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDG--SRARGELMF 158 (768)
Q Consensus 113 --~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~--~~~~G~i~l 158 (768)
+|++||++.++|..+..+. ....||+|....+ .+..|+|.+
T Consensus 81 ~~~dd~lG~~~i~l~~l~~~~-----~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 81 VQPDVLIGKVRIRLSTLEDDR-----VYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred CCCCceEEEEEEEHHHccCCC-----EEeeEEEeEeCCCCCccCCcEEEe
Confidence 8999999999999997653 2578999996642 235677754
No 21
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.81 E-value=1.5e-19 Score=163.27 Aligned_cols=111 Identities=23% Similarity=0.399 Sum_probs=97.9
Q ss_pred CCCcccccccccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeEeeeecCCCCCeeeeEEEEEe---c
Q 004208 24 GRERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGN-----YKGTTIPFEKKLNPEWNQVFAFTK---E 95 (768)
Q Consensus 24 ~~~~~~~~~~~~~~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~Wne~f~f~~---~ 95 (768)
|...+++.|+ .+.|.|+|++|+||+..+ .+.+||||++++.+ .+++|++++++.||+|||+|.|.+ .
T Consensus 2 G~l~~~l~y~----~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~ 76 (122)
T cd08381 2 GQVKLSISYK----NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVE 76 (122)
T ss_pred CeEEEEEEEe----CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChH
Confidence 4568899999 478999999999999999 89999999999973 468999999999999999999986 3
Q ss_pred cCCCceEEEEEEEcCCC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEc
Q 004208 96 RLQAISVELLVKDKMIV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRL 144 (768)
Q Consensus 96 ~~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 144 (768)
++....|.|+|||++.. ++++||++.|+|.++.... ....||+|
T Consensus 77 ~l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~-----~~~~W~~L 121 (122)
T cd08381 77 DLQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQ-----ETEKWYPL 121 (122)
T ss_pred HhCCCEEEEEEEeCCCCcCCcEEEEEEEeccccccCC-----CccceEEC
Confidence 55678999999999998 8999999999999998653 25789987
No 22
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.81 E-value=4.4e-19 Score=162.22 Aligned_cols=120 Identities=26% Similarity=0.395 Sum_probs=103.6
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeeecCCCCCeeeeEEEEEeccC---CCceEEEEEEEcCCC--CC
Q 004208 40 FLYVRIVRARDLQVNQVTGTCDPYVEVKIGNYKGTTIPFEKKLNPEWNQVFAFTKERL---QAISVELLVKDKMIV--NG 114 (768)
Q Consensus 40 ~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~Wne~f~f~~~~~---~~~~L~i~V~d~~~~--~d 114 (768)
.|+|+|++|++|+..|..|.+||||++++++++.+|++++++.||+|||+|.|.+.+. ....|.|+|||++.. ++
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d 80 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRR 80 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCC
Confidence 3899999999999999889999999999999999999999999999999999998643 246899999999876 79
Q ss_pred ceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCC-CCccceEEEEEEEEc
Q 004208 115 DFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKD-GSRARGELMFAIWFG 163 (768)
Q Consensus 115 ~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~-~~~~~G~i~l~i~~~ 163 (768)
++||++.+++.++.... ....+||+|+.+. .++.+|+|.+++++.
T Consensus 81 ~~lG~v~i~l~~l~~~~----~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 126 (127)
T cd04022 81 SFLGRVRISGTSFVPPS----EAVVQRYPLEKRGLFSRVRGEIGLKVYIT 126 (127)
T ss_pred CeeeEEEEcHHHcCCCC----CccceEeEeeeCCCCCCccEEEEEEEEEc
Confidence 99999999999987321 3368999999754 234789999999874
No 23
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.80 E-value=5.4e-19 Score=162.61 Aligned_cols=123 Identities=28% Similarity=0.421 Sum_probs=104.4
Q ss_pred ccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcCCC-CC
Q 004208 36 EQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGNYKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIV-NG 114 (768)
Q Consensus 36 ~~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~~-~d 114 (768)
.++|.|+|+|++|++|+..|..|.+||||++.+++++.+|++++++.||.|||+|.|.+.+.....|.|+|||++.. +|
T Consensus 12 ~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~~d 91 (136)
T cd08375 12 SGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFSPD 91 (136)
T ss_pred CCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCCCCC
Confidence 35789999999999999999899999999999999999999999999999999999999877678999999999988 89
Q ss_pred ceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCCCccceEEEEEEEE
Q 004208 115 DFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGSRARGELMFAIWF 162 (768)
Q Consensus 115 ~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~i~~ 162 (768)
++||++.+++.++............+|..+.. ..+|+|.+++.+
T Consensus 92 ~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~----~~~g~i~l~~~~ 135 (136)
T cd08375 92 DFLGRTEIRVADILKETKESKGPITKRLLLHE----VPTGEVVVKLDL 135 (136)
T ss_pred CeeEEEEEEHHHhccccccCCCcEEEEecccc----ccceeEEEEEEe
Confidence 99999999999987633222222345666642 256999998875
No 24
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.80 E-value=9.9e-19 Score=157.74 Aligned_cols=119 Identities=28% Similarity=0.448 Sum_probs=102.7
Q ss_pred EEEEEEEecCCCCCCCCCCCCCcCcEEEEEecCe-eeeeccccCCCCCccccEEEEEEeCCCcEEEEEEEeCCCCCCCCC
Q 004208 363 LELGILSAKELLPMKSRDGRGTTDAYCVAKYANK-WVRTRTVVDSFDPKWNEQYTWEVYDPYTVITLVVFDNCHLHPGGA 441 (768)
Q Consensus 363 l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~~-~~~T~~~~~t~nP~wne~~~~~v~~~~~~l~v~v~d~~~~~~~~~ 441 (768)
|.|.|++|+||++++ +..|.+||||++.++++ .++|+++++|+||.|||+|.|.+.+....|.|.|||++.++
T Consensus 2 l~v~v~~a~~L~~~~--~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~---- 75 (121)
T cd08401 2 LKIKIGEAKNLPPRS--GPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLR---- 75 (121)
T ss_pred eEEEEEEccCCCCCC--CCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCCCCEEEEEEEECCCCC----
Confidence 789999999999863 23578999999999875 58999999999999999999999876679999999999865
Q ss_pred CCCceEEEEEeccccccCceeeeeEeeeecCCCCcccccEEEEEEEE
Q 004208 442 KDSRIGKVRIRLSTLETDRIYTHSYPLVALLPNGVKKMGEVQLAVRF 488 (768)
Q Consensus 442 ~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 488 (768)
+|++||.+.++++++..+.....||+|......+ +..|+|+|+++|
T Consensus 76 ~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~-~~~G~i~l~~~~ 121 (121)
T cd08401 76 RDSVIGKVAIKKEDLHKYYGKDTWFPLQPVDADS-EVQGKVHLELRL 121 (121)
T ss_pred CCceEEEEEEEHHHccCCCCcEeeEEEEccCCCC-cccEEEEEEEEC
Confidence 8999999999999999887788999997654323 347999999875
No 25
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.79 E-value=1.1e-18 Score=164.89 Aligned_cols=124 Identities=23% Similarity=0.315 Sum_probs=107.8
Q ss_pred eeEEEEEEEEecCCCCCCCC---------------------------CCCCCcCcEEEEEecCee-eeeccccCCCCCcc
Q 004208 360 IGVLELGILSAKELLPMKSR---------------------------DGRGTTDAYCVAKYANKW-VRTRTVVDSFDPKW 411 (768)
Q Consensus 360 ~g~l~v~v~~a~~L~~~~~~---------------------------~~~g~~dpyv~v~~g~~~-~~T~~~~~t~nP~w 411 (768)
-|.|+|+|++|++|+++|.. ...|.+||||++.+++.. .||++++++.||.|
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~W 85 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVW 85 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCcc
Confidence 47899999999999998620 246789999999998755 69999999999999
Q ss_pred ccEEEEEEeCCCcEEEEEEEeCCCCCCCCCCCCceEEEEEeccccccCceeeeeEeeeecCCCCcccccEEEEEEEE
Q 004208 412 NEQYTWEVYDPYTVITLVVFDNCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPLVALLPNGVKKMGEVQLAVRF 488 (768)
Q Consensus 412 ne~~~~~v~~~~~~l~v~v~d~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 488 (768)
||.|.|.+.++.+.|.|.|+|++.++ +++||++.|+++++..+.....||+|.....++.+..|+|+++++|
T Consensus 86 nE~F~~~~~~~~~~l~~~V~d~d~~~-----~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f 157 (158)
T cd04015 86 NESFHIYCAHYASHVEFTVKDNDVVG-----AQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVSLQF 157 (158)
T ss_pred ceEEEEEccCCCCEEEEEEEeCCCcC-----CcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEEEEE
Confidence 99999999888889999999998753 6799999999999999888899999987655555667899999988
No 26
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=99.79 E-value=1.7e-19 Score=200.27 Aligned_cols=400 Identities=17% Similarity=0.176 Sum_probs=255.7
Q ss_pred cccccccccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeeecCCCCCeeeeEEEEEeccC---------
Q 004208 27 RLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGNYKGTTIPFEKKLNPEWNQVFAFTKERL--------- 97 (768)
Q Consensus 27 ~~~~~~~~~~~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~Wne~f~f~~~~~--------- 97 (768)
.++-.|+-+ ..+.++++|.+|++|.+.|..+.||||+.+.+-++.+.|.++.+|+||.||++..|.-.++
T Consensus 195 ~~Sc~~~e~-~~~~lR~yiyQar~L~a~dk~~~sdp~a~v~f~~qs~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~ 273 (1105)
T KOG1326|consen 195 EFSCYLSEV-IHSPLRSYIYQARALGAPDKDDESDPDAAVEFCGQSKETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLK 273 (1105)
T ss_pred ceEEecchh-hhhhhHHHHHHHHhhcCCCcccCCCchhhhhcccccceeEeecCcCCCCccceeeccceeecCccchhhc
Confidence 445555544 4677999999999999999999999999999999999999999999999999999973211
Q ss_pred CCceEEEEEEEcCCC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCCCccceEEEEEEEEcccCCccccccccc
Q 004208 98 QAISVELLVKDKMIV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGSRARGELMFAIWFGTQADEAFSSAWHS 176 (768)
Q Consensus 98 ~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~i~~~~~~d~~~~~~~~~ 176 (768)
+-..+.|+|||.++. .++|+|+......-... +....|+++... ....|+++++......... -.|..
T Consensus 274 ~ppi~v~e~yd~dr~g~~ef~gr~~~~p~V~~~------~p~lkw~p~~rg--~~l~gd~l~a~eliq~~~~---i~~p~ 342 (1105)
T KOG1326|consen 274 NPPIRVFEVYDLDRSGINEFKGRKKQRPYVMVQ------CPALKWVPTMRG--AFLDGDVLIAAELIQIGKP---IPQPP 342 (1105)
T ss_pred CCCeEEEEeehhhhhchHHhhcccccceEEEec------CCccceEEeecc--cccccchhHHHHHHhhcCC---CCCCC
Confidence 236788999999998 99999998776443332 125789998754 3356777765433222210 11111
Q ss_pred cccccccccccccccceeecC-------CeeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEeeecccCCCCCCccc
Q 004208 177 DTAVVSGENIMNCRSKVYVSP-------KLWYLRVNVIEAQDLVPKQRNRNPEVFIKAIFGNVVLKTTVSAKKTVNPTWN 249 (768)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~p-------~~~~L~V~v~~a~~L~~~d~~~~~dpyV~v~lg~~~~~T~~i~~~t~nP~wn 249 (768)
+. .+...+..| +.+.+.|-...-+++..........|-+.+.+|++..++..+.+...||.+.
T Consensus 343 ~~----------~~~~~~~vp~~iRp~~q~~~~evl~wgLrn~k~~~m~~~~~P~~~~e~g~e~v~s~~I~~~k~npnf~ 412 (1105)
T KOG1326|consen 343 PQ----------REIIFSLVPKKIRPKTQIGKAELLMWGLRNPKKSGMASTFSPALLVEFGGERVSSFSIFNRKKNPNFP 412 (1105)
T ss_pred cc----------cccceeccccCCCcceeeeeeehhhhhhcccccccccccCCcceeEeeCCceEeeeeehhhhhCCCCc
Confidence 10 001111112 2223333333445555444455678889999999999999988778899999
Q ss_pred ceEEEEe-cCC----CCCcEEEEEEeccCCCCCceeEEEEEeccc-ccc----------cc--CC------------CCC
Q 004208 250 EDLMFVA-AEP----FDDPLILTVEDKLGDNKEECLGRLVLPLSK-AGK----------RF--LP------------LPA 299 (768)
Q Consensus 250 e~f~f~~-~~~----~~~~L~i~V~d~d~~~~d~~lG~~~i~l~~-l~~----------~~--~~------------~~~ 299 (768)
..|.+-. .-+ ....+.++|.|.+.+++-..+|+|.+.-.. ..- +. ++ ...
T Consensus 413 s~~~~~~v~lpd~e~Y~ppl~akvvd~~~fg~~~v~g~c~i~~l~nf~c~p~~~~~~~Pq~~~d~~~~~~~~~~~~~~~~ 492 (1105)
T KOG1326|consen 413 SRVLGRLVILPDEELYMPPLNAKVVDLRQFGRMEVVGQCKILSLYNFFCDPSAVNSITPQFASDPVSIMMGSTDNEIRHC 492 (1105)
T ss_pred eeEEEEEEeccchHhhCccceeEEEecccccceeehhhhcchhhhhhccCchhhcccCcCCCCCchhhhcCCchhhhhhc
Confidence 7765543 222 345799999999999999999998876311 100 00 00 000
Q ss_pred CceeEEcccCccCcc---------------ccccccccce--EEEEEecC----------------------CCcc--cc
Q 004208 300 AAIWYNLERNIANGE---------------EKKDVRFASR--ICLRFSLD----------------------GGYH--VF 338 (768)
Q Consensus 300 ~~~w~~L~~~~~~g~---------------~~~~~~~~g~--i~l~v~~~----------------------~~~~--~~ 338 (768)
...|++..+...+++ ......+.-+ ..+.++-. |... ..
T Consensus 493 ~~~~l~~~~~~~~~e~~~~~w~k~~~~~~~~~k~~~~~~K~~~~LKiyn~ele~v~ef~~l~D~~~~f~l~rG~~~~e~~ 572 (1105)
T KOG1326|consen 493 NSSTLPASPHEDEEEREVDWWGKFYPSAEENAKWEVYEHKINVTLKIYNMELEMVAEFRGLQDWAVTFKLYRGKEGLECL 572 (1105)
T ss_pred cccCCCCCccccccceehhhhhhccccccccccccccccccceEEEEehhhhhhHHHHhhhhhccceeEeeeccccCCCc
Confidence 011111111100000 0000011111 23333310 0000 00
Q ss_pred cCccc---------c------cCccccc-cccCC--CCeeeEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEecCee--e
Q 004208 339 DEATN---------Y------SSDLRST-MKQLW--PPVIGVLELGILSAKELLPMKSRDGRGTTDAYCVAKYANKW--V 398 (768)
Q Consensus 339 ~~~~~---------~------~~~~~~~-~~~l~--~~~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~~~--~ 398 (768)
++... + +++..+. ...+. .+..-.++|.|.+|.+|.+. |++|.+|||+++.+|++. -
T Consensus 573 e~~Ivg~fKgl~rIyp~~~~~~~p~~pr~~~~~~~~~pi~~LvrVyvv~A~~L~p~---D~ng~adpYv~l~lGk~~~~d 649 (1105)
T KOG1326|consen 573 EQQIVGEFKGLFRIYPVPRNPSSPAPPRHFLDLPKEEPIKCLVRVYVVEAFSLQPS---DGNGDADPYVKLLLGKKRTLD 649 (1105)
T ss_pred ccchhhhhhcceeeecCCCccCCCCChhhhhcccccCcceeeEEEEEEEeeecccc---CCCCCcCceeeeeeccchhhh
Confidence 00000 0 0000000 00010 24556789999999999994 899999999999999988 5
Q ss_pred eeccccCCCCCccccEEEEEEeCCCc-EEEEEEEeCCCCCCCCCCCCceEEEEEeccc
Q 004208 399 RTRTVVDSFDPKWNEQYTWEVYDPYT-VITLVVFDNCHLHPGGAKDSRIGKVRIRLST 455 (768)
Q Consensus 399 ~T~~~~~t~nP~wne~~~~~v~~~~~-~l~v~v~d~~~~~~~~~~d~~lG~~~i~l~~ 455 (768)
++..+.+|+||+|++.|++....|.+ .++|+|||+|.++ +|+.||...|+|.+
T Consensus 650 ~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~----~d~~iget~iDLEn 703 (1105)
T KOG1326|consen 650 RAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEA----QDEKIGETTIDLEN 703 (1105)
T ss_pred hhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeeccc----ccchhhceehhhhh
Confidence 66678899999999999999988765 8999999999966 89999999999985
No 27
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.79 E-value=8.5e-19 Score=155.09 Aligned_cols=102 Identities=25% Similarity=0.427 Sum_probs=89.5
Q ss_pred ccEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcCCCCCcee
Q 004208 38 MEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGNYKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIVNGDFI 117 (768)
Q Consensus 38 ~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~~~d~~l 117 (768)
|+.|.|+|++|++|...+ ..||||++++++++.+|++.++ .||+|||+|.|.+.+.. ..|.|+|||+|.+.|++|
T Consensus 1 m~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~~~-~~L~v~V~dkd~~~DD~l 75 (127)
T cd08394 1 MSLLCVLVKKAKLDGAPD---KFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINRLD-LGLVIELWNKGLIWDTLV 75 (127)
T ss_pred CceEEEEEEEeeCCCCCC---CCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEcCCC-CEEEEEEEeCCCcCCCce
Confidence 578999999999996543 5699999999999999999987 59999999999998764 449999999997799999
Q ss_pred EEEEEcCCCCCCCCCCCCCCCCeEEEcccC
Q 004208 118 GKIKIDMPDIPKRVPPDSPLAPEWKRLEAK 147 (768)
Q Consensus 118 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 147 (768)
|++.|+|.++..+. .++.++||+|++.
T Consensus 76 G~v~i~L~~v~~~~---~~~~~~Wy~L~~~ 102 (127)
T cd08394 76 GTVWIPLSTIRQSN---EEGPGEWLTLDSE 102 (127)
T ss_pred EEEEEEhHHcccCC---CCCCCccEecChH
Confidence 99999999998763 3667999999854
No 28
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.79 E-value=7.6e-19 Score=158.65 Aligned_cols=117 Identities=25% Similarity=0.369 Sum_probs=101.8
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeeec-CCCCCeeeeEEEEEeccCCCceEEEEEEEcCCCCCcee
Q 004208 39 EFLYVRIVRARDLQVNQVTGTCDPYVEVKIGNYKGTTIPFE-KKLNPEWNQVFAFTKERLQAISVELLVKDKMIVNGDFI 117 (768)
Q Consensus 39 ~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~-~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~~~d~~l 117 (768)
|.|+|+|++|++|+..+..+.+||||++.+++++.+|+++. ++.||+|||+|.|.+.......|.|+|||++..+|++|
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~~~~i 80 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRKPDLI 80 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCCCcce
Confidence 57999999999999999899999999999999989999875 57999999999999977556889999999987779999
Q ss_pred EEEEEcCCCCCCCCCCCCCCCCeEEEcccCCCCccceEEEEEEEE
Q 004208 118 GKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGSRARGELMFAIWF 162 (768)
Q Consensus 118 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~i~~ 162 (768)
|++.+++.++..+. ...+|++|.... +..|+|.+++.|
T Consensus 81 G~~~~~l~~~~~~~-----~~~~w~~L~~~~--~~~G~i~l~l~f 118 (118)
T cd08681 81 GDTEVDLSPALKEG-----EFDDWYELTLKG--RYAGEVYLELTF 118 (118)
T ss_pred EEEEEecHHHhhcC-----CCCCcEEeccCC--cEeeEEEEEEEC
Confidence 99999999986542 247999998643 367999998864
No 29
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.79 E-value=6.1e-19 Score=154.62 Aligned_cols=100 Identities=15% Similarity=0.246 Sum_probs=87.9
Q ss_pred CcccccccccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC----eeeEeeeecCCCCCeeeeEEEEEec--cCCC
Q 004208 26 ERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGN----YKGTTIPFEKKLNPEWNQVFAFTKE--RLQA 99 (768)
Q Consensus 26 ~~~~~~~~~~~~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~----~~~~T~~~~~t~nP~Wne~f~f~~~--~~~~ 99 (768)
..+++.|+.. .+.|.|+|++|++|+ . .|.+||||++.+.. .+.+|+++++|+||+|||+|.|.+. ++..
T Consensus 3 l~fsL~Y~~~--~~~L~V~vikA~~L~-~--~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~ 77 (118)
T cd08677 3 LHYSLSYDKQ--KAELHVNILEAENIS-V--DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLD 77 (118)
T ss_pred EEEEEEEcCc--CCEEEEEEEEecCCC-C--CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCC
Confidence 4678889964 689999999999998 3 46699999999974 4779999999999999999999974 5677
Q ss_pred ceEEEEEEEcCCC-CCceeEEEEEcCCCCCCC
Q 004208 100 ISVELLVKDKMIV-NGDFIGKIKIDMPDIPKR 130 (768)
Q Consensus 100 ~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~ 130 (768)
..|.|.|||+|++ ++++||++.+++.++...
T Consensus 78 ~tL~~~V~d~Drfs~~d~IG~v~l~l~~~~~~ 109 (118)
T cd08677 78 GTLTLTLRCCDRFSRHSTLGELRLKLADVSMM 109 (118)
T ss_pred cEEEEEEEeCCCCCCCceEEEEEEccccccCC
Confidence 8999999999999 999999999999987544
No 30
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.79 E-value=2.9e-18 Score=157.80 Aligned_cols=119 Identities=27% Similarity=0.467 Sum_probs=102.1
Q ss_pred CCeeeEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEecCeeeeeccccCCCCCccccEEEEEEeCCC-cEEEEEEEeCCC
Q 004208 357 PPVIGVLELGILSAKELLPMKSRDGRGTTDAYCVAKYANKWVRTRTVVDSFDPKWNEQYTWEVYDPY-TVITLVVFDNCH 435 (768)
Q Consensus 357 ~~~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~~~~~T~~~~~t~nP~wne~~~~~v~~~~-~~l~v~v~d~~~ 435 (768)
...+|.|+|+|++|+||++. +..|.+||||++.++++.+||++++++.||.|||.|.|.+.++. +.|.|+|||++.
T Consensus 11 ~~~~G~L~V~Vi~A~~L~~~---d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~ 87 (136)
T cd08375 11 ASGIGRLMVVIVEGRDLKPC---NSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDF 87 (136)
T ss_pred CCCcEEEEEEEEEeeCCCCC---CCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCC
Confidence 46789999999999999985 67789999999999999999999999999999999999998754 589999999998
Q ss_pred CCCCCCCCCceEEEEEecccccc-----CceeeeeEeeeecCCCCcccccEEEEEEEE
Q 004208 436 LHPGGAKDSRIGKVRIRLSTLET-----DRIYTHSYPLVALLPNGVKKMGEVQLAVRF 488 (768)
Q Consensus 436 ~~~~~~~d~~lG~~~i~l~~l~~-----~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 488 (768)
++ +|++||++.++|+++.. ......|.++. .+..|+|+|++.|
T Consensus 88 ~~----~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~------~~~~g~i~l~~~~ 135 (136)
T cd08375 88 FS----PDDFLGRTEIRVADILKETKESKGPITKRLLLH------EVPTGEVVVKLDL 135 (136)
T ss_pred CC----CCCeeEEEEEEHHHhccccccCCCcEEEEeccc------cccceeEEEEEEe
Confidence 65 89999999999999986 22344555552 3345999999987
No 31
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.78 E-value=3.3e-18 Score=154.00 Aligned_cols=113 Identities=25% Similarity=0.465 Sum_probs=101.8
Q ss_pred EEEEEEEecCCCCCCCCCCCCCcCcEEEEEecCeeeeeccccCCCCCccccEEEEEEeCC-CcEEEEEEEeCCCCCCCCC
Q 004208 363 LELGILSAKELLPMKSRDGRGTTDAYCVAKYANKWVRTRTVVDSFDPKWNEQYTWEVYDP-YTVITLVVFDNCHLHPGGA 441 (768)
Q Consensus 363 l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~~~~~T~~~~~t~nP~wne~~~~~v~~~-~~~l~v~v~d~~~~~~~~~ 441 (768)
++|.|++|+||+.. +..|.+||||+++++++.++|++++++.||.|||.|.|.+.++ ...|.|+|||++.++
T Consensus 2 ~~V~v~~a~~L~~~---~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~---- 74 (116)
T cd08376 2 VTIVLVEGKNLPPM---DDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGK---- 74 (116)
T ss_pred EEEEEEEEECCCCC---CCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCC----
Confidence 78999999999985 5678999999999999999999999999999999999999876 679999999999865
Q ss_pred CCCceEEEEEeccccccCceeeeeEeeeecCCCCcccccEEEEEEEEE
Q 004208 442 KDSRIGKVRIRLSTLETDRIYTHSYPLVALLPNGVKKMGEVQLAVRFT 489 (768)
Q Consensus 442 ~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~ 489 (768)
+|++||++.++|+++..+.....||+|... .|+|++++.++
T Consensus 75 ~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~-------~G~~~~~~~~~ 115 (116)
T cd08376 75 KDEFIGRCEIDLSALPREQTHSLELELEDG-------EGSLLLLLTLT 115 (116)
T ss_pred CCCeEEEEEEeHHHCCCCCceEEEEEccCC-------CcEEEEEEEec
Confidence 899999999999999998888999999532 39999998874
No 32
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.78 E-value=4.4e-18 Score=154.96 Aligned_cols=118 Identities=25% Similarity=0.452 Sum_probs=100.8
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEecCe-eeeeccccCCCCCccccEEEEEEeCCC-cEEEEEEEeCCCCCC
Q 004208 361 GVLELGILSAKELLPMKSRDGRGTTDAYCVAKYANK-WVRTRTVVDSFDPKWNEQYTWEVYDPY-TVITLVVFDNCHLHP 438 (768)
Q Consensus 361 g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~~-~~~T~~~~~t~nP~wne~~~~~v~~~~-~~l~v~v~d~~~~~~ 438 (768)
..|+|+|++|+||++. +.+||||++.+++. ..||++ +++.||.|||.|.|.+..+. ..++|.|||++.++
T Consensus 4 ~~L~V~Vi~A~~L~~~------~~~DPYv~v~l~~~~~~kT~v-~~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~- 75 (126)
T cd08400 4 RSLQLNVLEAHKLPVK------HVPHPYCVISLNEVKVARTKV-REGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRS- 75 (126)
T ss_pred eEEEEEEEEeeCCCCC------CCCCeeEEEEECCEeEEEeec-CCCCCCccCCEEEEecCCCCcCEEEEEEEECCCCC-
Confidence 4699999999999762 46899999999874 478987 46899999999999976554 58999999999865
Q ss_pred CCCCCCceEEEEEeccccccCceeeeeEeeeecCCCCcccccEEEEEEEEE
Q 004208 439 GGAKDSRIGKVRIRLSTLETDRIYTHSYPLVALLPNGVKKMGEVQLAVRFT 489 (768)
Q Consensus 439 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~ 489 (768)
+|++||++.|+|+++..+.....||+|......+.+..|+|+|+++|.
T Consensus 76 ---~d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~ 123 (126)
T cd08400 76 ---KDSEIAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYS 123 (126)
T ss_pred ---CCCeEEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEE
Confidence 899999999999999998888999999876544556679999999995
No 33
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.78 E-value=3.6e-18 Score=153.75 Aligned_cols=113 Identities=27% Similarity=0.434 Sum_probs=101.1
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcCCC-CCceeE
Q 004208 40 FLYVRIVRARDLQVNQVTGTCDPYVEVKIGNYKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIV-NGDFIG 118 (768)
Q Consensus 40 ~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~~-~d~~lG 118 (768)
.|+|+|++|++|+..+..+.+||||++++++++.+|+++++|.||.|||+|.|.+.+.....|.|+|||++.. +|++||
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~iG 80 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFIG 80 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCeEE
Confidence 3789999999999999889999999999999999999999999999999999998776678999999999998 999999
Q ss_pred EEEEcCCCCCCCCCCCCCCCCeEEEcccCCCCccceEEEEEEEE
Q 004208 119 KIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGSRARGELMFAIWF 162 (768)
Q Consensus 119 ~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~i~~ 162 (768)
++.+++.++..+. ....|++|++. .|+|.+.+.+
T Consensus 81 ~~~~~l~~l~~~~-----~~~~w~~L~~~-----~G~~~~~~~~ 114 (116)
T cd08376 81 RCEIDLSALPREQ-----THSLELELEDG-----EGSLLLLLTL 114 (116)
T ss_pred EEEEeHHHCCCCC-----ceEEEEEccCC-----CcEEEEEEEe
Confidence 9999999987653 35799999864 3889887765
No 34
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.78 E-value=2.2e-18 Score=155.58 Aligned_cols=116 Identities=27% Similarity=0.464 Sum_probs=100.6
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEecCeeeeeccccC-CCCCccccEEEEEEeCC-CcEEEEEEEeCCCCCC
Q 004208 361 GVLELGILSAKELLPMKSRDGRGTTDAYCVAKYANKWVRTRTVVD-SFDPKWNEQYTWEVYDP-YTVITLVVFDNCHLHP 438 (768)
Q Consensus 361 g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~~~~~T~~~~~-t~nP~wne~~~~~v~~~-~~~l~v~v~d~~~~~~ 438 (768)
|.|+|+|++|+||+.. +..+.+||||+++++++..+|+++.+ +.||.|||.|.|.+..+ .+.|.|+|||++..
T Consensus 1 g~L~V~v~~A~~L~~~---~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-- 75 (118)
T cd08681 1 GTLVVVVLKARNLPNK---RKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKR-- 75 (118)
T ss_pred CEEEEEEEEccCCCCC---CcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCC--
Confidence 6799999999999985 67789999999999999999999865 78999999999999874 56899999999863
Q ss_pred CCCCCCceEEEEEeccccccCceeeeeEeeeecCCCCcccccEEEEEEEE
Q 004208 439 GGAKDSRIGKVRIRLSTLETDRIYTHSYPLVALLPNGVKKMGEVQLAVRF 488 (768)
Q Consensus 439 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 488 (768)
.|++||++.++++++..+.....||+|... + +..|+|+|+++|
T Consensus 76 ---~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~---~-~~~G~i~l~l~f 118 (118)
T cd08681 76 ---KPDLIGDTEVDLSPALKEGEFDDWYELTLK---G-RYAGEVYLELTF 118 (118)
T ss_pred ---CCcceEEEEEecHHHhhcCCCCCcEEeccC---C-cEeeEEEEEEEC
Confidence 388999999999998877667899999642 2 466999999875
No 35
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.77 E-value=2.1e-18 Score=158.90 Aligned_cols=114 Identities=24% Similarity=0.252 Sum_probs=98.0
Q ss_pred CCcccccccccccccEEEEEEEEeecCCCCC-CCCCCCcEEEEEECC-----eeeEeeeecCCCCCeeeeEEEEEeccCC
Q 004208 25 RERLTSSFDLVEQMEFLYVRIVRARDLQVNQ-VTGTCDPYVEVKIGN-----YKGTTIPFEKKLNPEWNQVFAFTKERLQ 98 (768)
Q Consensus 25 ~~~~~~~~~~~~~~~~L~V~i~~a~~L~~~d-~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~Wne~f~f~~~~~~ 98 (768)
...+++.|+ .+.|.|+|++|+||+..+ ..|.+||||++++.+ .+.||+++++|+||+|||+|.|.+. +.
T Consensus 19 ~l~lsl~y~----~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~-l~ 93 (146)
T cd04028 19 DIQLGLYDK----KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVS-PT 93 (146)
T ss_pred eEEEEEEeC----CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEc-CC
Confidence 567888884 478999999999998864 578899999999964 3679999999999999999999998 66
Q ss_pred CceEEEEEE-EcCCC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCC
Q 004208 99 AISVELLVK-DKMIV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKD 148 (768)
Q Consensus 99 ~~~L~i~V~-d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 148 (768)
...|.|+|| |++.+ ++++||++.|+|.++..+. ....||+|.+..
T Consensus 94 ~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~~~~-----~~~~Wy~L~~~~ 140 (146)
T cd04028 94 GKTLQVIVWGDYGRMDKKVFMGVAQILLDDLDLSN-----LVIGWYKLFPTS 140 (146)
T ss_pred CCEEEEEEEeCCCCCCCCceEEEEEEEcccccCCC-----CceeEEecCCcc
Confidence 889999999 57777 8999999999999986553 247899998764
No 36
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.77 E-value=3.8e-18 Score=156.59 Aligned_cols=121 Identities=25% Similarity=0.414 Sum_probs=104.9
Q ss_pred cEEEEEEEEeecCCCCCC--CCCCCcEEEEEECCeeeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcCCC-CCc
Q 004208 39 EFLYVRIVRARDLQVNQV--TGTCDPYVEVKIGNYKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIV-NGD 115 (768)
Q Consensus 39 ~~L~V~i~~a~~L~~~d~--~g~~dPyv~v~~~~~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~~-~d~ 115 (768)
|.|+|+|++|++|+..+. .+.+||||++++++++.+|++++++.||+|||+|.|.+.+.....|.|+|||++.. +++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~~ 80 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAGKD 80 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCCCCC
Confidence 579999999999999887 88999999999999999999999999999999999999876678999999999988 899
Q ss_pred eeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCC---CccceEEEEEEE
Q 004208 116 FIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDG---SRARGELMFAIW 161 (768)
Q Consensus 116 ~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~---~~~~G~i~l~i~ 161 (768)
+||++.+++.++..... .....+|++|.+... ....|+|.+.+.
T Consensus 81 ~lG~~~i~l~~~~~~~~--~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~ 127 (128)
T cd04024 81 YLGEFDIALEEVFADGK--TGQSDKWITLKSTRPGKTSVVSGEIHLQFS 127 (128)
T ss_pred cceEEEEEHHHhhcccc--cCccceeEEccCcccCccccccceEEEEEE
Confidence 99999999999874211 123579999987742 236899999875
No 37
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.77 E-value=1.7e-18 Score=157.44 Aligned_cols=115 Identities=23% Similarity=0.397 Sum_probs=98.8
Q ss_pred CCCcccccccccccccEEEEEEEEeecCCCCCCC-CCCCcEEEEEECC-----eeeEeeeecCCCCCeeeeEEEEEec--
Q 004208 24 GRERLTSSFDLVEQMEFLYVRIVRARDLQVNQVT-GTCDPYVEVKIGN-----YKGTTIPFEKKLNPEWNQVFAFTKE-- 95 (768)
Q Consensus 24 ~~~~~~~~~~~~~~~~~L~V~i~~a~~L~~~d~~-g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~Wne~f~f~~~-- 95 (768)
|..++++.|+.. .+.|.|+|++|+||++.|.. |.+||||++++.+ .+.+|++++++.||+|||+|.|.+.
T Consensus 2 G~i~~sl~y~~~--~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~ 79 (125)
T cd08393 2 GSVQFALDYDPK--LRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVERE 79 (125)
T ss_pred cEEEEEEEEECC--CCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHH
Confidence 356889999864 57899999999999999875 8999999999963 3579999999999999999999975
Q ss_pred cCCCceEEEEEEEcCCC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcc
Q 004208 96 RLQAISVELLVKDKMIV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLE 145 (768)
Q Consensus 96 ~~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 145 (768)
++....|.|+|||++.. ++++||++.++|.++.... ....||+|.
T Consensus 80 ~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~~~~-----~~~~W~~L~ 125 (125)
T cd08393 80 ELPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWDWSN-----TQPTWYPLQ 125 (125)
T ss_pred HhCCCEEEEEEEeCCCCCCCcEeEEEEEecCccccCC-----CCcceEECc
Confidence 45567999999999988 8999999999999996652 257899874
No 38
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.77 E-value=2.6e-18 Score=156.16 Aligned_cols=118 Identities=20% Similarity=0.318 Sum_probs=100.3
Q ss_pred CCCcccccccccccccEEEEEEEEeecCCCCCCC-CCCCcEEEEEECC-----eeeEeeeecCCCCCeeeeEEEEEec--
Q 004208 24 GRERLTSSFDLVEQMEFLYVRIVRARDLQVNQVT-GTCDPYVEVKIGN-----YKGTTIPFEKKLNPEWNQVFAFTKE-- 95 (768)
Q Consensus 24 ~~~~~~~~~~~~~~~~~L~V~i~~a~~L~~~d~~-g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~Wne~f~f~~~-- 95 (768)
|..++++.|+.. .+.|.|+|++|+||+.+|.. |.+||||++++.+ .+.||++++++.||+|||+|.|.+.
T Consensus 2 G~i~~sl~Y~~~--~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~ 79 (128)
T cd08392 2 GEIEFALHYNFR--TSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEAD 79 (128)
T ss_pred cEEEEEEEEeCC--CCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHH
Confidence 467899999975 47999999999999998875 9999999999964 3679999999999999999999974
Q ss_pred cCCCceEEEEEEEcCCC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcc
Q 004208 96 RLQAISVELLVKDKMIV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLE 145 (768)
Q Consensus 96 ~~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 145 (768)
++....|.|.|||.+.+ ++++||++.|+|.++..... .+....||+|.
T Consensus 80 ~l~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~~~~~~--~~~~~~W~~l~ 128 (128)
T cd08392 80 LLSSRQLQVSVWHSRTLKRRVFLGEVLIPLADWDFEDT--DSQRFLWYPLN 128 (128)
T ss_pred HhCCcEEEEEEEeCCCCcCcceEEEEEEEcCCcccCCC--CccccceEECc
Confidence 34467999999999988 99999999999999966532 13468999973
No 39
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.77 E-value=8.8e-18 Score=152.02 Aligned_cols=116 Identities=29% Similarity=0.544 Sum_probs=103.2
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcCCC-CCcee
Q 004208 39 EFLYVRIVRARDLQVNQVTGTCDPYVEVKIGNYKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIV-NGDFI 117 (768)
Q Consensus 39 ~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~~-~d~~l 117 (768)
|.|.|+|++|++|+..+..+.+||||++++++...+|++++++.||.|||+|.|.+.+. ...|.|+|||++.. ++++|
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~-~~~l~~~v~d~~~~~~~~~i 79 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDI-HDVLEVTVYDEDKDKKPEFL 79 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCc-CCEEEEEEEECCCCCCCcee
Confidence 57999999999999999889999999999999889999999999999999999998765 57899999999987 99999
Q ss_pred EEEEEcCCCCCCCCCCCCCCCCeEEEcccCCC-CccceEEEEEEEE
Q 004208 118 GKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDG-SRARGELMFAIWF 162 (768)
Q Consensus 118 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~-~~~~G~i~l~i~~ 162 (768)
|++.+++.++..+ ...|++|.++.. .+..|+|.+++.+
T Consensus 80 G~~~~~l~~~~~~-------~~~~~~l~~~~~~~~~~G~i~l~~~~ 118 (119)
T cd08377 80 GKVAIPLLSIKNG-------ERKWYALKDKKLRTRAKGSILLEMDV 118 (119)
T ss_pred eEEEEEHHHCCCC-------CceEEECcccCCCCceeeEEEEEEEe
Confidence 9999999998654 368999987653 3478999998765
No 40
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.77 E-value=8.1e-18 Score=152.26 Aligned_cols=118 Identities=25% Similarity=0.477 Sum_probs=103.2
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEecCeeeeeccccCCCCCccccEEEEEEeCCCcEEEEEEEeCCCCCCCC
Q 004208 361 GVLELGILSAKELLPMKSRDGRGTTDAYCVAKYANKWVRTRTVVDSFDPKWNEQYTWEVYDPYTVITLVVFDNCHLHPGG 440 (768)
Q Consensus 361 g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~~~~~T~~~~~t~nP~wne~~~~~v~~~~~~l~v~v~d~~~~~~~~ 440 (768)
|.|+|+|++|+||+.+ +..+.+||||++++++..++|++++++.||.|||+|.|.+.+....+.|+|||++.++
T Consensus 1 g~l~v~v~~a~~L~~~---~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~~~--- 74 (119)
T cd08377 1 GFLQVKVIRASGLAAA---DIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIHDVLEVTVYDEDKDK--- 74 (119)
T ss_pred CEEEEEEEeeeCCCCC---CCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCcCCEEEEEEEECCCCC---
Confidence 6799999999999985 6677899999999999999999999999999999999999877789999999998754
Q ss_pred CCCCceEEEEEeccccccCceeeeeEeeeecCCCCcccccEEEEEEEE
Q 004208 441 AKDSRIGKVRIRLSTLETDRIYTHSYPLVALLPNGVKKMGEVQLAVRF 488 (768)
Q Consensus 441 ~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 488 (768)
++++||++.+++.++..+. ..||+|..... ..+..|+|.+++.|
T Consensus 75 -~~~~iG~~~~~l~~~~~~~--~~~~~l~~~~~-~~~~~G~i~l~~~~ 118 (119)
T cd08377 75 -KPEFLGKVAIPLLSIKNGE--RKWYALKDKKL-RTRAKGSILLEMDV 118 (119)
T ss_pred -CCceeeEEEEEHHHCCCCC--ceEEECcccCC-CCceeeEEEEEEEe
Confidence 7899999999999998765 58999975533 23356999999887
No 41
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.76 E-value=6.7e-18 Score=155.97 Aligned_cols=122 Identities=25% Similarity=0.464 Sum_probs=104.1
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-------eeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcCCC
Q 004208 40 FLYVRIVRARDLQVNQVTGTCDPYVEVKIGNY-------KGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIV 112 (768)
Q Consensus 40 ~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~~-------~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~~ 112 (768)
.|+|+|++|++|+..|..|.+||||++++++. +.+|+++++|.||+|||+|.|.+... ...|.|+|||++..
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~~~v~d~~~~ 79 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPR-EHRLLFEVFDENRL 79 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCC-CCEEEEEEEECCCC
Confidence 38999999999999998899999999999764 46899999999999999999998654 56899999999998
Q ss_pred -CCceeEEEEEcCCCCCCCCCCC-CCCCCeEEEcccCCC-CccceEEEEEEEE
Q 004208 113 -NGDFIGKIKIDMPDIPKRVPPD-SPLAPEWKRLEAKDG-SRARGELMFAIWF 162 (768)
Q Consensus 113 -~d~~lG~~~i~l~~l~~~~~~~-~~~~~~w~~L~~~~~-~~~~G~i~l~i~~ 162 (768)
++++||++.+++.++....+.+ .....+||+|++..+ ++..|+|++++.|
T Consensus 80 ~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~ 132 (133)
T cd04033 80 TRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAY 132 (133)
T ss_pred CCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEee
Confidence 8999999999999998764432 234679999997643 3478999999876
No 42
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.76 E-value=6.8e-18 Score=154.34 Aligned_cols=120 Identities=29% Similarity=0.503 Sum_probs=101.9
Q ss_pred EEEEEEEecCCCCCCCCCCCCCcCcEEEEEecCeeeeeccccCCCCCccccEEEEEEeCCC----cEEEEEEEeCCCCCC
Q 004208 363 LELGILSAKELLPMKSRDGRGTTDAYCVAKYANKWVRTRTVVDSFDPKWNEQYTWEVYDPY----TVITLVVFDNCHLHP 438 (768)
Q Consensus 363 l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~~~~~T~~~~~t~nP~wne~~~~~v~~~~----~~l~v~v~d~~~~~~ 438 (768)
|+|+|++|+||.+. +..|.+||||+++++++.+||++++++.||.|||.|.|.+.++. ..|.|+|||++.++
T Consensus 2 L~V~vi~A~~L~~~---d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~- 77 (127)
T cd04022 2 LVVEVVDAQDLMPK---DGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSG- 77 (127)
T ss_pred eEEEEEEeeCCCCC---CCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCc-
Confidence 89999999999985 66788999999999999999999999999999999999998643 47999999988742
Q ss_pred CCCCCCceEEEEEeccccc-cCceeeeeEeeeecCCCCcccccEEEEEEEEE
Q 004208 439 GGAKDSRIGKVRIRLSTLE-TDRIYTHSYPLVALLPNGVKKMGEVQLAVRFT 489 (768)
Q Consensus 439 ~~~~d~~lG~~~i~l~~l~-~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~ 489 (768)
++|++||++.++++++. .+.....||+|..... ..+..|+|+|++.++
T Consensus 78 --~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~-~~~~~G~l~l~~~~~ 126 (127)
T cd04022 78 --RRRSFLGRVRISGTSFVPPSEAVVQRYPLEKRGL-FSRVRGEIGLKVYIT 126 (127)
T ss_pred --CCCCeeeEEEEcHHHcCCCCCccceEeEeeeCCC-CCCccEEEEEEEEEc
Confidence 26889999999999998 4666689999975432 234579999999874
No 43
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.76 E-value=7.6e-18 Score=154.61 Aligned_cols=120 Identities=22% Similarity=0.439 Sum_probs=102.9
Q ss_pred eEEEEEEEEecCCCCCCCCCC--CCCcCcEEEEEecCeeeeeccccCCCCCccccEEEEEEeC-CCcEEEEEEEeCCCCC
Q 004208 361 GVLELGILSAKELLPMKSRDG--RGTTDAYCVAKYANKWVRTRTVVDSFDPKWNEQYTWEVYD-PYTVITLVVFDNCHLH 437 (768)
Q Consensus 361 g~l~v~v~~a~~L~~~~~~~~--~g~~dpyv~v~~g~~~~~T~~~~~t~nP~wne~~~~~v~~-~~~~l~v~v~d~~~~~ 437 (768)
|.|+|.|++|+||+.. +. .+.+||||++.++++.++|++++++.||.|||.|.|.+.+ ....|.|+|||++..+
T Consensus 1 g~l~v~v~~a~~L~~~---~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~ 77 (128)
T cd04024 1 GVLRVHVVEAKDLAAK---DRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFA 77 (128)
T ss_pred CEEEEEEEEeeCCCcc---cCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCC
Confidence 6799999999999985 45 7899999999999999999999999999999999999997 4679999999999854
Q ss_pred CCCCCCCceEEEEEecccccc---CceeeeeEeeeecCC-CCcccccEEEEEEE
Q 004208 438 PGGAKDSRIGKVRIRLSTLET---DRIYTHSYPLVALLP-NGVKKMGEVQLAVR 487 (768)
Q Consensus 438 ~~~~~d~~lG~~~i~l~~l~~---~~~~~~~~~L~~~~~-~g~~~~G~i~l~~~ 487 (768)
+|++||++.++|.++.. ......||+|..... +.....|+|+|++.
T Consensus 78 ----~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~ 127 (128)
T cd04024 78 ----GKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFS 127 (128)
T ss_pred ----CCCcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEE
Confidence 78999999999999873 334579999986532 23446899999886
No 44
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.76 E-value=1.1e-17 Score=152.65 Aligned_cols=119 Identities=18% Similarity=0.333 Sum_probs=102.0
Q ss_pred EEEEEEEecCCCCCCCCCCCCCcCcEEEEEecC--eeeeeccccCCCCCccccEEEEEEeCCCcEEEEEEEeCCCCCCCC
Q 004208 363 LELGILSAKELLPMKSRDGRGTTDAYCVAKYAN--KWVRTRTVVDSFDPKWNEQYTWEVYDPYTVITLVVFDNCHLHPGG 440 (768)
Q Consensus 363 l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~--~~~~T~~~~~t~nP~wne~~~~~v~~~~~~l~v~v~d~~~~~~~~ 440 (768)
|.|+|++|+||+. ..|.+||||++++++ +.+||++++++.||.|||.|.|.+......|.|+|||++..+
T Consensus 1 l~v~v~~A~~L~~-----~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~--- 72 (126)
T cd08678 1 LLVKNIKANGLSE-----AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNGKKS--- 72 (126)
T ss_pred CEEEEEEecCCCC-----CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCCCEEEEEEEECCCCC---
Confidence 5789999999975 457899999999974 568999999999999999999999766678999999999854
Q ss_pred CCCCceEEEEEeccccccCceeeeeEeeeecCCCCcccccEEEEEEEEEe
Q 004208 441 AKDSRIGKVRIRLSTLETDRIYTHSYPLVALLPNGVKKMGEVQLAVRFTC 490 (768)
Q Consensus 441 ~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~~ 490 (768)
+|++||++.++++++..+.....||+|......+.+..|+|++++.|..
T Consensus 73 -~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~ 121 (126)
T cd08678 73 -DSKFLGLAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFME 121 (126)
T ss_pred -CCceEEEEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEec
Confidence 7999999999999999877678899997553334556799999999954
No 45
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.76 E-value=5.9e-18 Score=150.89 Aligned_cols=102 Identities=25% Similarity=0.402 Sum_probs=87.4
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------eeeEeeeecCCCCCeeeeEEEEEecc---CCCceEEEEEEEc
Q 004208 40 FLYVRIVRARDLQVNQVTGTCDPYVEVKIGN-------YKGTTIPFEKKLNPEWNQVFAFTKER---LQAISVELLVKDK 109 (768)
Q Consensus 40 ~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~-------~~~~T~~~~~t~nP~Wne~f~f~~~~---~~~~~L~i~V~d~ 109 (768)
.|+|+|++|++|+..+ .|.+||||+|++-| ++++|+++.+|.||+|||+|.|.+.. +....|.|.|||+
T Consensus 1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~ 79 (120)
T cd08395 1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY 79 (120)
T ss_pred CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence 3899999999999887 59999999999832 35689999999999999999999863 4456799999999
Q ss_pred CCC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccC
Q 004208 110 MIV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAK 147 (768)
Q Consensus 110 ~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 147 (768)
+.. ++++||++.+++.++..+. ....|++|+..
T Consensus 80 d~~~~dd~IG~~~l~l~~~~~~~-----~~~~w~~L~~~ 113 (120)
T cd08395 80 CFARDDRLVGVTVLQLRDIAQAG-----SCACWLPLGRR 113 (120)
T ss_pred cccCCCCEEEEEEEEHHHCcCCC-----cEEEEEECcCc
Confidence 977 7999999999999998663 25789999765
No 46
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.76 E-value=6.1e-18 Score=153.57 Aligned_cols=115 Identities=20% Similarity=0.282 Sum_probs=97.9
Q ss_pred CCCcccccccccccccEEEEEEEEeecCCCCCC-CCCCCcEEEEEECC-----eeeEeeeecCCCCCeeeeEEEEEecc-
Q 004208 24 GRERLTSSFDLVEQMEFLYVRIVRARDLQVNQV-TGTCDPYVEVKIGN-----YKGTTIPFEKKLNPEWNQVFAFTKER- 96 (768)
Q Consensus 24 ~~~~~~~~~~~~~~~~~L~V~i~~a~~L~~~d~-~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~Wne~f~f~~~~- 96 (768)
|..++++.|+- ..+.|.|+|++|+||+..+. .|.+||||++++.+ .++||++++++.||+|||+|.|.+..
T Consensus 2 G~i~~sl~y~~--~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~ 79 (125)
T cd04029 2 GEILFSLSYDY--KTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHS 79 (125)
T ss_pred cEEEEEEEEEC--CCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHH
Confidence 45678888874 56899999999999998875 58899999999963 35789999999999999999999753
Q ss_pred -CCCceEEEEEEEcCCC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcc
Q 004208 97 -LQAISVELLVKDKMIV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLE 145 (768)
Q Consensus 97 -~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 145 (768)
+....|.|+|||++.. ++++||++.++|..+.... ....|++|.
T Consensus 80 ~l~~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~-----~~~~w~~l~ 125 (125)
T cd04029 80 QLETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWNFDS-----QHEECLPLH 125 (125)
T ss_pred HhCCCEEEEEEEECCCCCCCcEEEEEEEeCCcccccC-----CcccEEECc
Confidence 4567899999999988 9999999999999997663 257899984
No 47
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.76 E-value=2e-17 Score=150.80 Aligned_cols=118 Identities=15% Similarity=0.235 Sum_probs=102.1
Q ss_pred ccEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcCCCCCcee
Q 004208 38 MEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGNYKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIVNGDFI 117 (768)
Q Consensus 38 ~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~~~d~~l 117 (768)
-.+|+|+|++|++|...|..|.+||||++++++++.+|++++++.||+|||.|.|.+.+. ...|.|+|||++..+|++|
T Consensus 2 ~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~i~V~d~~~~~d~~l 80 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKP-RSPIKIQVWNSNLLCDEFL 80 (126)
T ss_pred cEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCC-CCEEEEEEEECCCCCCCce
Confidence 358999999999999999899999999999999999999999999999999999988765 6789999999988889999
Q ss_pred EEEEEcCCCCCCCCCCCCCCCCeEEEcccCC---CCccceEEEEEEEEc
Q 004208 118 GKIKIDMPDIPKRVPPDSPLAPEWKRLEAKD---GSRARGELMFAIWFG 163 (768)
Q Consensus 118 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~---~~~~~G~i~l~i~~~ 163 (768)
|++.+++..+... ..+|++|.... +.+..|+|.+++.+.
T Consensus 81 G~~~~~l~~~~~~-------~~~~~~l~~~~~~~~~~~~G~i~~~~~~~ 122 (126)
T cd04046 81 GQATLSADPNDSQ-------TLRTLPLRKRGRDAAGEVPGTISVKVTSS 122 (126)
T ss_pred EEEEEecccCCCc-------CceEEEcccCCCCCCCCCCCEEEEEEEEc
Confidence 9999999875422 46888986432 334789999998765
No 48
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.75 E-value=2e-17 Score=152.81 Aligned_cols=122 Identities=25% Similarity=0.356 Sum_probs=99.6
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeeecCCCCCeeeeEEEEEeccC---------CCceEEEEEEEc
Q 004208 39 EFLYVRIVRARDLQVNQVTGTCDPYVEVKIGNYKGTTIPFEKKLNPEWNQVFAFTKERL---------QAISVELLVKDK 109 (768)
Q Consensus 39 ~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~Wne~f~f~~~~~---------~~~~L~i~V~d~ 109 (768)
++|+|+|++|++|+..|..|.+||||++.+++++.+|+++++|.||+|||+|.|.+..+ ....|.|+|||+
T Consensus 1 ~~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~ 80 (135)
T cd04017 1 FQLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQ 80 (135)
T ss_pred CEEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeC
Confidence 47999999999999999999999999999999999999999999999999999985332 125799999999
Q ss_pred CCC-CCceeEEEEE-cCCCCCCCCCCCCCCCCeEEEcccCCCCccceEEEEEEEEcc
Q 004208 110 MIV-NGDFIGKIKI-DMPDIPKRVPPDSPLAPEWKRLEAKDGSRARGELMFAIWFGT 164 (768)
Q Consensus 110 ~~~-~d~~lG~~~i-~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~i~~~~ 164 (768)
+.. +|++||++.+ ++..+... .......+|++|.... ...|+|++++.+..
T Consensus 81 d~~~~d~~iG~~~i~~~~~~~~~--~~~~~~~~W~~L~~~~--~~~Geil~~~~~~~ 133 (135)
T cd04017 81 DSVGKDEFLGRSVAKPLVKLDLE--EDFPPKLQWFPIYKGG--QSAGELLAAFELIE 133 (135)
T ss_pred cCCCCCccceEEEeeeeeecccC--CCCCCCceEEEeecCC--CchhheeEEeEEEE
Confidence 988 8999999997 34333321 1234568999997543 36899999987753
No 49
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.75 E-value=1.1e-17 Score=151.20 Aligned_cols=113 Identities=26% Similarity=0.365 Sum_probs=98.3
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcCCCCCcee
Q 004208 41 LYVRIVRARDLQVNQVTGTCDPYVEVKIGN---YKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIVNGDFI 117 (768)
Q Consensus 41 L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~---~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~~~d~~l 117 (768)
|.|+|++|++|+..+..+.+||||++++++ ++.+|++++++.||+|||+|.|.+.......|.|+|||++..+|++|
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~~~~~i 81 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYVMDDHL 81 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCCCCccc
Confidence 789999999999988889999999999964 67899999999999999999999876556789999999998889999
Q ss_pred EEEEEcCCCCCCCCCCCCCCCCeEEEcccCCCCccceEEEEEEEE
Q 004208 118 GKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGSRARGELMFAIWF 162 (768)
Q Consensus 118 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~i~~ 162 (768)
|++.+++.++..+. ....|++|.++ ..|+|.+.+.+
T Consensus 82 G~~~~~l~~l~~g~-----~~~~~~~L~~~----~~g~l~~~~~~ 117 (119)
T cd04036 82 GTVLFDVSKLKLGE-----KVRVTFSLNPQ----GKEELEVEFLL 117 (119)
T ss_pred EEEEEEHHHCCCCC-----cEEEEEECCCC----CCceEEEEEEe
Confidence 99999999987653 25789999875 24888887754
No 50
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.75 E-value=2.6e-17 Score=149.88 Aligned_cols=118 Identities=17% Similarity=0.309 Sum_probs=98.2
Q ss_pred ccEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-eeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcCCC-CCc
Q 004208 38 MEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGNY-KGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIV-NGD 115 (768)
Q Consensus 38 ~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~~-~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~~-~d~ 115 (768)
...|.|+|++|+||+.. +.+||||+|.+++. ..+|++ +++.||.|||+|.|.+.......+.|.|||.+.. +|+
T Consensus 3 ~~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~~~~kT~v-~~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~ 78 (126)
T cd08400 3 VRSLQLNVLEAHKLPVK---HVPHPYCVISLNEVKVARTKV-REGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDS 78 (126)
T ss_pred eeEEEEEEEEeeCCCCC---CCCCeeEEEEECCEeEEEeec-CCCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCCC
Confidence 45799999999999864 47899999999984 468887 4689999999999986544346799999999988 999
Q ss_pred eeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCC--CccceEEEEEEEEcc
Q 004208 116 FIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDG--SRARGELMFAIWFGT 164 (768)
Q Consensus 116 ~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~--~~~~G~i~l~i~~~~ 164 (768)
+||++.++|.++..+. ....|++|.+..+ .+..|+|+++++|..
T Consensus 79 ~iG~v~i~l~~l~~~~-----~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 79 EIAEVTVQLSKLQNGQ-----ETDEWYPLSSASPLKGGEWGSLRIRARYSH 124 (126)
T ss_pred eEEEEEEEHhHccCCC-----cccEeEEcccCCCCCCCcCcEEEEEEEEEc
Confidence 9999999999987653 2578999987653 346799999999864
No 51
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.75 E-value=1.6e-17 Score=149.96 Aligned_cols=115 Identities=23% Similarity=0.335 Sum_probs=98.4
Q ss_pred EEEEEEEeecCCCCC-CCCCCCcEEEEEECCe-eeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcCCC-CCcee
Q 004208 41 LYVRIVRARDLQVNQ-VTGTCDPYVEVKIGNY-KGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIV-NGDFI 117 (768)
Q Consensus 41 L~V~i~~a~~L~~~d-~~g~~dPyv~v~~~~~-~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~~-~d~~l 117 (768)
|.|+|.+|+||+..+ ..|.+||||+++++++ ..+|+++++|.||+|||+|.|.+.+. ...|.|.|||++.. +|++|
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~-~~~l~~~v~d~~~~~~~~~i 80 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRT-FRHLSFYIYDRDVLRRDSVI 80 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCC-CCEEEEEEEECCCCCCCceE
Confidence 789999999999874 4678999999999875 68999999999999999999999764 47999999999998 99999
Q ss_pred EEEEEcCCCCCCCCCCCCCCCCeEEEcccCCC-CccceEEEEEEE
Q 004208 118 GKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDG-SRARGELMFAIW 161 (768)
Q Consensus 118 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~-~~~~G~i~l~i~ 161 (768)
|++.+++.++..+. ....|++|.+... .+..|+|++++.
T Consensus 81 G~~~i~l~~l~~~~-----~~~~w~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd08401 81 GKVAIKKEDLHKYY-----GKDTWFPLQPVDADSEVQGKVHLELR 120 (121)
T ss_pred EEEEEEHHHccCCC-----CcEeeEEEEccCCCCcccEEEEEEEE
Confidence 99999999997643 2578999987532 336799998875
No 52
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.75 E-value=2.5e-17 Score=155.57 Aligned_cols=118 Identities=26% Similarity=0.394 Sum_probs=101.2
Q ss_pred cEEEEEEEEeecCCCCC------------------------------CCCCCCcEEEEEECCee-eEeeeecCCCCCeee
Q 004208 39 EFLYVRIVRARDLQVNQ------------------------------VTGTCDPYVEVKIGNYK-GTTIPFEKKLNPEWN 87 (768)
Q Consensus 39 ~~L~V~i~~a~~L~~~d------------------------------~~g~~dPyv~v~~~~~~-~~T~~~~~t~nP~Wn 87 (768)
|.|.|+|++|++|+++| ..|.+||||+|.+++.+ .+|++++++.||+||
T Consensus 7 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~Wn 86 (158)
T cd04015 7 GTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVWN 86 (158)
T ss_pred eeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCccc
Confidence 78999999999999887 35679999999999854 699999999999999
Q ss_pred eEEEEEeccCCCceEEEEEEEcCCCCCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCCC--ccceEEEEEEEE
Q 004208 88 QVFAFTKERLQAISVELLVKDKMIVNGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGS--RARGELMFAIWF 162 (768)
Q Consensus 88 e~f~f~~~~~~~~~L~i~V~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~--~~~G~i~l~i~~ 162 (768)
|+|.|.+... ...|.|+|||.+..++++||++.+++.++..+. ...+|++|.+..+. +..|+|++++.|
T Consensus 87 E~F~~~~~~~-~~~l~~~V~d~d~~~~~~IG~~~i~l~~l~~g~-----~~~~w~~L~~~~~~~~~~~~~l~v~~~f 157 (158)
T cd04015 87 ESFHIYCAHY-ASHVEFTVKDNDVVGAQLIGRAYIPVEDLLSGE-----PVEGWLPILDSNGKPPKPGAKIRVSLQF 157 (158)
T ss_pred eEEEEEccCC-CCEEEEEEEeCCCcCCcEEEEEEEEhHHccCCC-----CcceEEECcCCCCCCCCCCCEEEEEEEE
Confidence 9999998765 568999999999887899999999999997653 35799999876543 345899998876
No 53
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.75 E-value=1.4e-17 Score=151.28 Aligned_cols=114 Identities=27% Similarity=0.528 Sum_probs=99.9
Q ss_pred cEEEEEEEEeecCCCCCC------CCCCCcEEEEEECCeeeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcCCC
Q 004208 39 EFLYVRIVRARDLQVNQV------TGTCDPYVEVKIGNYKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIV 112 (768)
Q Consensus 39 ~~L~V~i~~a~~L~~~d~------~g~~dPyv~v~~~~~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~~ 112 (768)
|.|.|+|++|+||+..|. .|.+||||+++++++..+|++++++.||+|||+|.|.+.+.....|.|+|||++..
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~ 80 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPD 80 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCC
Confidence 579999999999998774 36899999999999999999999999999999999998776678999999999988
Q ss_pred CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCCCccceEEEEEEE
Q 004208 113 NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGSRARGELMFAIW 161 (768)
Q Consensus 113 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~i~ 161 (768)
++++||++.+++.++..+. ...+|++|.+. ..|+|++.+.
T Consensus 81 ~~~~iG~~~i~l~~l~~~~-----~~~~w~~L~~~----~~G~~~~~~~ 120 (121)
T cd08391 81 KDDFLGRLSIDLGSVEKKG-----FIDEWLPLEDV----KSGRLHLKLE 120 (121)
T ss_pred CCCcEEEEEEEHHHhcccC-----ccceEEECcCC----CCceEEEEEe
Confidence 8999999999999987542 35799999864 3488988764
No 54
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.75 E-value=2e-17 Score=150.42 Aligned_cols=116 Identities=27% Similarity=0.405 Sum_probs=100.5
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcCCC-CCceeE
Q 004208 40 FLYVRIVRARDLQVNQVTGTCDPYVEVKIGNYKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIV-NGDFIG 118 (768)
Q Consensus 40 ~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~~-~d~~lG 118 (768)
.|+|+|++|++|+..|..+.+||||++++++.+.+|++++++.||+|||+|.|.+.+.....|.|+|||++.. ++++||
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFLG 80 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEeE
Confidence 3899999999999999888999999999999999999999999999999999998776578899999999988 899999
Q ss_pred EEEEcCCCCCCCCCCCCCCCCeEEEcccCCC-----CccceEEEEEE
Q 004208 119 KIKIDMPDIPKRVPPDSPLAPEWKRLEAKDG-----SRARGELMFAI 160 (768)
Q Consensus 119 ~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~-----~~~~G~i~l~i 160 (768)
++.+++.++.... ....|+.|.+... .+..|.|.+.|
T Consensus 81 ~~~~~l~~l~~~~-----~~~~w~~L~~~~~~~~~~~~~~G~l~~~~ 122 (123)
T cd04025 81 KVVFSIQTLQQAK-----QEEGWFRLLPDPRAEEESGGNLGSLRLKV 122 (123)
T ss_pred EEEEEHHHcccCC-----CCCCEEECCCCCCCCccccCceEEEEEEe
Confidence 9999999986542 2478999986432 23678888765
No 55
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.75 E-value=2e-17 Score=150.99 Aligned_cols=117 Identities=18% Similarity=0.310 Sum_probs=100.7
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC--eeeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcCCC-CCcee
Q 004208 41 LYVRIVRARDLQVNQVTGTCDPYVEVKIGN--YKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIV-NGDFI 117 (768)
Q Consensus 41 L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~--~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~~-~d~~l 117 (768)
|.|+|++|+||+. ..|.+||||++.+++ ++.+|+++++|.||+|||+|.|.+... ...|.|+|||++.. +|++|
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~~~v~d~~~~~~~~~l 77 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPN-SKELLFEVYDNGKKSDSKFL 77 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCC-CCEEEEEEEECCCCCCCceE
Confidence 6799999999987 678999999999984 678999999999999999999998643 67899999999998 89999
Q ss_pred EEEEEcCCCCCCCCCCCCCCCCeEEEcccCCC--CccceEEEEEEEEccc
Q 004208 118 GKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDG--SRARGELMFAIWFGTQ 165 (768)
Q Consensus 118 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~--~~~~G~i~l~i~~~~~ 165 (768)
|++.+++.++..... ..+|++|.+..+ ....|+|.+.+.|...
T Consensus 78 G~~~i~l~~l~~~~~-----~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~ 122 (126)
T cd08678 78 GLAIVPFDELRKNPS-----GRQIFPLQGRPYEGDSVSGSITVEFLFMEP 122 (126)
T ss_pred EEEEEeHHHhccCCc-----eeEEEEecCCCCCCCCcceEEEEEEEEecc
Confidence 999999999876532 468999987643 3478999999988643
No 56
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.75 E-value=7.9e-18 Score=148.26 Aligned_cols=103 Identities=23% Similarity=0.399 Sum_probs=92.7
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcCCCCCceeEE
Q 004208 40 FLYVRIVRARDLQVNQVTGTCDPYVEVKIGNYKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIVNGDFIGK 119 (768)
Q Consensus 40 ~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~~~d~~lG~ 119 (768)
.|.|+|++|++|+..+..+.+||||++++++++.+|+++++|.||+|||+|.|.+.+.....|.|+|||.+. +++||+
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~--~~~iG~ 78 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT--GKSLGS 78 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC--CCccEE
Confidence 389999999999999888999999999999999999999999999999999999988767899999999986 899999
Q ss_pred EEEcCCCCCCCCCCCCCCCCeEEEcccC
Q 004208 120 IKIDMPDIPKRVPPDSPLAPEWKRLEAK 147 (768)
Q Consensus 120 ~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 147 (768)
+.++|.++.... .....+||+|.+.
T Consensus 79 ~~i~l~~l~~~~---~~~~~~w~~L~~~ 103 (105)
T cd04050 79 LTLPLSELLKEP---DLTLDQPFPLDNS 103 (105)
T ss_pred EEEEHHHhhccc---cceeeeeEecCCC
Confidence 999999997652 2346899999864
No 57
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.74 E-value=1.8e-17 Score=150.48 Aligned_cols=105 Identities=15% Similarity=0.248 Sum_probs=90.3
Q ss_pred CeeeEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEecC-----eeeeeccccCCCCCccccEEEEEEeC---CCcEEEEE
Q 004208 358 PVIGVLELGILSAKELLPMKSRDGRGTTDAYCVAKYAN-----KWVRTRTVVDSFDPKWNEQYTWEVYD---PYTVITLV 429 (768)
Q Consensus 358 ~~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~-----~~~~T~~~~~t~nP~wne~~~~~v~~---~~~~l~v~ 429 (768)
+..|.|.|+|++|+||++.+ ...|.+||||++++.+ ...||++++++.||.|||+|.|.+.. ....|.|+
T Consensus 12 ~~~~~L~V~Vi~a~~L~~~~--~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~ 89 (125)
T cd04029 12 YKTQSLNVHVKECRNLAYGD--EAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLS 89 (125)
T ss_pred CCCCeEEEEEEEecCCCccC--CCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEE
Confidence 34567999999999998852 2357899999999942 35799999999999999999999875 24589999
Q ss_pred EEeCCCCCCCCCCCCceEEEEEeccccccCceeeeeEee
Q 004208 430 VFDNCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPL 468 (768)
Q Consensus 430 v~d~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 468 (768)
|||++.++ ++++||.+.|+|.++...+..+.||||
T Consensus 90 V~d~~~~~----~~~~lG~~~i~l~~~~~~~~~~~w~~l 124 (125)
T cd04029 90 VWHYDRFG----RNTFLGEVEIPLDSWNFDSQHEECLPL 124 (125)
T ss_pred EEECCCCC----CCcEEEEEEEeCCcccccCCcccEEEC
Confidence 99999865 899999999999999998888999998
No 58
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.74 E-value=1.6e-17 Score=151.05 Aligned_cols=119 Identities=26% Similarity=0.425 Sum_probs=101.3
Q ss_pred EEEEEEEEecCCCCCCCCCCCCCcCcEEEEEecCeeeeeccccCCCCCccccEEEEEEeCC-CcEEEEEEEeCCCCCCCC
Q 004208 362 VLELGILSAKELLPMKSRDGRGTTDAYCVAKYANKWVRTRTVVDSFDPKWNEQYTWEVYDP-YTVITLVVFDNCHLHPGG 440 (768)
Q Consensus 362 ~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~~~~~T~~~~~t~nP~wne~~~~~v~~~-~~~l~v~v~d~~~~~~~~ 440 (768)
+|+|+|++|+||..+ +..+.+||||++++++..++|++++++.||.|||+|.|.+.+. ...|.|+|||++.++
T Consensus 1 ~L~v~vi~a~~L~~~---d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~--- 74 (123)
T cd04025 1 RLRCHVLEARDLAPK---DRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVS--- 74 (123)
T ss_pred CEEEEEEEeeCCCCC---CCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCC---
Confidence 389999999999885 5667899999999999999999999999999999999999875 468999999999865
Q ss_pred CCCCceEEEEEeccccccCceeeeeEeeeecCCC---CcccccEEEEEEE
Q 004208 441 AKDSRIGKVRIRLSTLETDRIYTHSYPLVALLPN---GVKKMGEVQLAVR 487 (768)
Q Consensus 441 ~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~---g~~~~G~i~l~~~ 487 (768)
+|++||.+.++|+++..+.....||.|...... ..+..|.|++.|+
T Consensus 75 -~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~~ 123 (123)
T cd04025 75 -KNDFLGKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLRLKVR 123 (123)
T ss_pred -CCcEeEEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEEEEEeC
Confidence 789999999999999877666889999754322 2345688888763
No 59
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.74 E-value=9e-18 Score=151.14 Aligned_cols=114 Identities=18% Similarity=0.264 Sum_probs=98.1
Q ss_pred CCcccccccccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC------eeeEeeeecCCCCCeeeeEEEEEec--c
Q 004208 25 RERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGN------YKGTTIPFEKKLNPEWNQVFAFTKE--R 96 (768)
Q Consensus 25 ~~~~~~~~~~~~~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~------~~~~T~~~~~t~nP~Wne~f~f~~~--~ 96 (768)
...+++.|+. ..+.|.|+|++|+||+..+..|.+||||++++-+ .+++|++++++.||+|||+|.|++. +
T Consensus 2 ~i~~sL~Y~~--~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~ 79 (124)
T cd08680 2 QVQIGLRYDS--GDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTK 79 (124)
T ss_pred eEEEEEEECC--CCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHH
Confidence 3578889996 4579999999999999988889999999999863 3679999999999999999999974 5
Q ss_pred CCCceEEEEEEEcCCC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEc
Q 004208 97 LQAISVELLVKDKMIV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRL 144 (768)
Q Consensus 97 ~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 144 (768)
+....|.|.|||++.. ++++||++.|+|.++....+ ....||+|
T Consensus 80 L~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~~~~----~~~~Wy~l 124 (124)
T cd08680 80 LYQKTLQVDVCSVGPDQQEECLGGAQISLADFESSEE----MSTKWYNL 124 (124)
T ss_pred hhcCEEEEEEEeCCCCCceeEEEEEEEEhhhccCCCc----cccccccC
Confidence 6678999999999988 89999999999999965532 25788875
No 60
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.74 E-value=2.6e-17 Score=151.59 Aligned_cols=105 Identities=19% Similarity=0.331 Sum_probs=89.8
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEecC-----eeeeeccccCCCCCccccEEEEEEeCCCcEEEEEEE-eCC
Q 004208 361 GVLELGILSAKELLPMKSRDGRGTTDAYCVAKYAN-----KWVRTRTVVDSFDPKWNEQYTWEVYDPYTVITLVVF-DNC 434 (768)
Q Consensus 361 g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~-----~~~~T~~~~~t~nP~wne~~~~~v~~~~~~l~v~v~-d~~ 434 (768)
|.|.|+|++|+||.+.+ +..|.+||||++++.+ .+.||+++++++||.|||+|.|.+......|.|+|| |++
T Consensus 29 ~~L~V~Vi~ArnL~~~~--~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~l~~~~L~v~V~~d~~ 106 (146)
T cd04028 29 GQLEVEVIRARGLVQKP--GSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVSPTGKTLQVIVWGDYG 106 (146)
T ss_pred CEEEEEEEEeeCCCccc--CCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEcCCCCEEEEEEEeCCC
Confidence 46999999999998752 3467899999999933 268999999999999999999999865669999999 566
Q ss_pred CCCCCCCCCCceEEEEEeccccccCceeeeeEeeeec
Q 004208 435 HLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPLVAL 471 (768)
Q Consensus 435 ~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 471 (768)
.++ ++++||.+.|+|+++..+.....||+|...
T Consensus 107 ~~~----~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~ 139 (146)
T cd04028 107 RMD----KKVFMGVAQILLDDLDLSNLVIGWYKLFPT 139 (146)
T ss_pred CCC----CCceEEEEEEEcccccCCCCceeEEecCCc
Confidence 543 889999999999999877777899999754
No 61
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.74 E-value=1.2e-17 Score=152.14 Aligned_cols=115 Identities=25% Similarity=0.497 Sum_probs=99.5
Q ss_pred CCCcccccccccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeEeeeecCCCCCeeeeEEEEEecc--CC
Q 004208 24 GRERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGN---YKGTTIPFEKKLNPEWNQVFAFTKER--LQ 98 (768)
Q Consensus 24 ~~~~~~~~~~~~~~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~---~~~~T~~~~~t~nP~Wne~f~f~~~~--~~ 98 (768)
|..++++.|+- +.+.|.|+|++|+||+..|..|.+||||++++.+ ..++|++++++.||+|||+|.|.+.. +.
T Consensus 3 G~l~~sl~y~~--~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~ 80 (124)
T cd08387 3 GELHFSLEYDK--DMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELP 80 (124)
T ss_pred CEEEEEEEECC--CCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhC
Confidence 35678888885 5689999999999999999999999999999952 46899999999999999999999753 34
Q ss_pred CceEEEEEEEcCCC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcc
Q 004208 99 AISVELLVKDKMIV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLE 145 (768)
Q Consensus 99 ~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 145 (768)
...|.|+|||++.+ ++++||++.+++.++..+. ....|++|.
T Consensus 81 ~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~-----~~~~W~~l~ 123 (124)
T cd08387 81 KRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSE-----KLDLWRKIQ 123 (124)
T ss_pred CCEEEEEEEECCCCCCCceeEEEEEecccccCCC-----CcceEEECc
Confidence 57899999999988 8999999999999998653 257899985
No 62
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.74 E-value=1.4e-17 Score=151.75 Aligned_cols=115 Identities=30% Similarity=0.455 Sum_probs=99.1
Q ss_pred CCCcccccccccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeEeeeecCCCCCeeeeEEEEEecc--CC
Q 004208 24 GRERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGN---YKGTTIPFEKKLNPEWNQVFAFTKER--LQ 98 (768)
Q Consensus 24 ~~~~~~~~~~~~~~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~---~~~~T~~~~~t~nP~Wne~f~f~~~~--~~ 98 (768)
|...+++.|+.. .+.|.|+|++|+||+..+..|.+||||++.+.+ .+.+|++++++.||+|||+|.|.+.. +.
T Consensus 3 G~l~~~l~y~~~--~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~ 80 (124)
T cd08385 3 GKLQFSLDYDFQ--SNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELG 80 (124)
T ss_pred cEEEEEEEEeCC--CCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhC
Confidence 356788888864 478999999999999999889999999999864 46799999999999999999999753 44
Q ss_pred CceEEEEEEEcCCC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcc
Q 004208 99 AISVELLVKDKMIV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLE 145 (768)
Q Consensus 99 ~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 145 (768)
...|.|+|||++.+ ++++||++.+++.++..+. ...+|++|+
T Consensus 81 ~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~-----~~~~W~~l~ 123 (124)
T cd08385 81 NKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLGH-----VTEEWRDLE 123 (124)
T ss_pred CCEEEEEEEeCCCCCCCceeEEEEEecCcccCCC-----CcceEEEcc
Confidence 57899999999988 8999999999999987642 357999986
No 63
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.74 E-value=1.3e-17 Score=152.01 Aligned_cols=117 Identities=23% Similarity=0.297 Sum_probs=97.0
Q ss_pred CCCcccccccccccccEEEEEEEEeecCCCCCCC-CCCCcEEEEEECC---eeeEeeeecCCCCCeeeeEEEEE-ec--c
Q 004208 24 GRERLTSSFDLVEQMEFLYVRIVRARDLQVNQVT-GTCDPYVEVKIGN---YKGTTIPFEKKLNPEWNQVFAFT-KE--R 96 (768)
Q Consensus 24 ~~~~~~~~~~~~~~~~~L~V~i~~a~~L~~~d~~-g~~dPyv~v~~~~---~~~~T~~~~~t~nP~Wne~f~f~-~~--~ 96 (768)
|...+++.|+.. .+.|.|+|++|+||+..+.. |.+||||++.+.+ ++.||++++++.||+|||+|.|. +. +
T Consensus 3 G~l~~~l~y~~~--~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~ 80 (128)
T cd08388 3 GTLFFSLRYNSE--KKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQ 80 (128)
T ss_pred eEEEEEEEEECC--CCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHH
Confidence 356888999964 57999999999999998875 8999999999963 46799999999999999999994 43 3
Q ss_pred CCCceEEEEEEEcCCC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcc
Q 004208 97 LQAISVELLVKDKMIV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLE 145 (768)
Q Consensus 97 ~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 145 (768)
.....|.|+|||+|.. +|++||++.++|.++...... ....|.+|.
T Consensus 81 ~~~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~~~~~---~~~~~~~~~ 127 (128)
T cd08388 81 LQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGADLLNEG---ELLVSREIQ 127 (128)
T ss_pred hCCCEEEEEEEEcCCCCCCceeEEEEEeccccCCCCCc---eEEEEEecc
Confidence 4456899999999988 999999999999999765221 146787765
No 64
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.74 E-value=1.8e-17 Score=147.64 Aligned_cols=105 Identities=27% Similarity=0.381 Sum_probs=92.0
Q ss_pred cccEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeeecCCCCCeeeeEEEEEeccC----CCceEEEEEEEcCCC
Q 004208 37 QMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGNYKGTTIPFEKKLNPEWNQVFAFTKERL----QAISVELLVKDKMIV 112 (768)
Q Consensus 37 ~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~Wne~f~f~~~~~----~~~~L~i~V~d~~~~ 112 (768)
+.+.|+|+|++|++|+ .|.+||||++++++++.+|++++++.||.|||+|.|.+... ....|.|+|||++..
T Consensus 2 ~~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~ 77 (111)
T cd04011 2 QDFQVRVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSL 77 (111)
T ss_pred CcEEEEEEEEEcccCC----CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCccc
Confidence 4678999999999998 57899999999999999999999999999999999997532 356899999999988
Q ss_pred -CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccC
Q 004208 113 -NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAK 147 (768)
Q Consensus 113 -~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 147 (768)
+|++||++.++|.++..+ +++.....|++|.++
T Consensus 78 ~~~~~iG~~~i~l~~v~~~--~~~~~~~~w~~L~~~ 111 (111)
T cd04011 78 RSDTLIGSFKLDVGTVYDQ--PDHAFLRKWLLLTDP 111 (111)
T ss_pred ccCCccEEEEECCccccCC--CCCcceEEEEEeeCc
Confidence 899999999999999765 344567899999863
No 65
>PF04842 DUF639: Plant protein of unknown function (DUF639); InterPro: IPR006927 The sequences in this family are plant proteins of unknown function.
Probab=99.74 E-value=1.6e-17 Score=181.03 Aligned_cols=177 Identities=20% Similarity=0.259 Sum_probs=147.5
Q ss_pred cchhhhHHHHHHHHhhHHHHHHhhccccccccchhHHHHHHHHHHHHHcchh---HHHHHHHHHHHHHhhhcccCCCCCC
Q 004208 560 RRGKANLARLMRFLNGFGVAWIWFDQVRRWKNPMTTTFVHVFYVIMVLFPQM---ILATFFFILFGVVIMKFKRRPRHPP 636 (768)
Q Consensus 560 ~~~~~n~~rl~~~~~~~~~~~~~~~~i~~W~~p~~t~~~~~~~~~~v~~p~l---~lp~~~l~l~~~~~~~~~~~~~~~~ 636 (768)
.-+-+|++-+++++.|+..++.+++.+.+|++|.+|+ +|+++..++.|.+| ++|++++++++.|+|..+...
T Consensus 483 eGI~tNvav~kELL~Pl~~i~~~~~~l~~We~P~kt~-~Fl~~~~~iI~r~wl~Y~~p~~Ll~~a~~Ml~~r~~~~---- 557 (683)
T PF04842_consen 483 EGIDTNVAVMKELLFPLIEIAKWLQKLASWEEPLKTL-VFLALFLYIIYRGWLGYIFPAFLLFSAVFMLWLRYQGR---- 557 (683)
T ss_pred cCCccHHHHHHhccccHHHHHHHHHHHhhccCcchhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc----
Confidence 3355899999999999999999999999999999994 45556666777776 699999999999999666411
Q ss_pred CCCcccccccCCCCCCCccccCC-CCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCchhHHHHHHH
Q 004208 637 HMDIKLSFADKAHPDELDEEFDT-FPSSKQGHILTTRYDRLRSIAARMVTLNGDLDSQLERLQSLIDWRDPRATAMFSIF 715 (768)
Q Consensus 637 ~~~~~~s~~~~~~~~~~~~e~d~-~~~~~~~~~~~~~~~~l~~~~~~vQ~~l~~~a~~~e~~~~l~~w~~p~~t~~~~~~ 715 (768)
.+...++... .|+.++. .+++-++|+.+.++++.++.++.++.|+|.++.|..|++|..++++
T Consensus 558 -------------~g~~~~~v~V~~pP~~nT---vEqilalQ~Ais~~E~~iQ~~NI~LLKiRsllls~~PqaT~~Va~~ 621 (683)
T PF04842_consen 558 -------------LGKSFGEVTVRDPPPKNT---VEQILALQEAISQLEEYIQAANIVLLKIRSLLLSKFPQATNKVALA 621 (683)
T ss_pred -------------cCCccceEEecCCCCccH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 1122222222 2555555 8889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHhhhhhhhee-cccCCCccCCCCCchhHHHhcC
Q 004208 716 CLMAAVVFYIVPLWILLLFAGPF-VMRHPRFRIDIPALPQNFLRRL 760 (768)
Q Consensus 716 l~~~~~v~~~vP~r~i~l~~g~~-~~r~P~~r~~~~~~~~~~~~rl 760 (768)
++++|+++.++|+||++++..+. |+|+..+|+ .....|.|||
T Consensus 622 Ll~~A~~LavvP~kyil~~v~l~~FTre~~~Rr---~s~er~~RRl 664 (683)
T PF04842_consen 622 LLGLAAVLAVVPFKYILLFVFLEVFTRESPFRR---ESSERFNRRL 664 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCch---hhHHHHHHHH
Confidence 99999999999999999998888 889888997 5777776664
No 66
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.74 E-value=2.5e-17 Score=148.79 Aligned_cols=100 Identities=29% Similarity=0.381 Sum_probs=87.3
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEEeeecccCCCCCCcccceEEEEe-c--CCCCCcEEEEEEecc
Q 004208 201 YLRVNVIEAQDLVPKQRNRNPEVFIKAIFG-----NVVLKTTVSAKKTVNPTWNEDLMFVA-A--EPFDDPLILTVEDKL 272 (768)
Q Consensus 201 ~L~V~v~~a~~L~~~d~~~~~dpyV~v~lg-----~~~~~T~~i~~~t~nP~wne~f~f~~-~--~~~~~~L~i~V~d~d 272 (768)
.|.|.|++|+||+..+ .+.+||||++++. ..+.+|+++++ +.||.|||+|.|.+ . +.....|.|+|||++
T Consensus 14 ~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~-~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d 91 (122)
T cd08381 14 TLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRK-TRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHD 91 (122)
T ss_pred EEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCC-CCCCCcccEEEEecCChHHhCCCEEEEEEEeCC
Confidence 5999999999999999 8899999999995 35789999987 99999999999986 2 235668999999999
Q ss_pred CCCCCceeEEEEEeccccccccCCCCCCceeEEc
Q 004208 273 GDNKEECLGRLVLPLSKAGKRFLPLPAAAIWYNL 306 (768)
Q Consensus 273 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L 306 (768)
..+++++||++.++|+++.. ......||+|
T Consensus 92 ~~~~~~~lG~~~i~l~~l~~----~~~~~~W~~L 121 (122)
T cd08381 92 SLVENEFLGGVCIPLKKLDL----SQETEKWYPL 121 (122)
T ss_pred CCcCCcEEEEEEEecccccc----CCCccceEEC
Confidence 98899999999999999873 2446889987
No 67
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.74 E-value=3.9e-17 Score=147.76 Aligned_cols=116 Identities=28% Similarity=0.446 Sum_probs=98.7
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCe-eeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcCCC-CCceeE
Q 004208 41 LYVRIVRARDLQVNQVTGTCDPYVEVKIGNY-KGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIV-NGDFIG 118 (768)
Q Consensus 41 L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~~-~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~~-~d~~lG 118 (768)
|.|+|++|++|...|..|.+||||++++++. ..+|++++++.||+|||+|.|.+... ...|.|+|||++.. +|++||
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~-~~~l~v~v~d~~~~~~d~~iG 80 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPG-FHTVSFYVLDEDTLSRDDVIG 80 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCC-CCEEEEEEEECCCCCCCCEEE
Confidence 7899999999999999999999999999885 47999999999999999999998654 47899999999998 899999
Q ss_pred EEEEcCCCCCCCCCCCCCCCCeEEEcccCCC-CccceEEEEEEE
Q 004208 119 KIKIDMPDIPKRVPPDSPLAPEWKRLEAKDG-SRARGELMFAIW 161 (768)
Q Consensus 119 ~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~-~~~~G~i~l~i~ 161 (768)
++.+++..+.... ....+|++|.+..+ ....|+|++.+.
T Consensus 81 ~~~~~~~~~~~~~----~~~~~W~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd04054 81 KVSLTREVISAHP----RGIDGWMNLTEVDPDEEVQGEIHLELS 120 (121)
T ss_pred EEEEcHHHhccCC----CCCCcEEECeeeCCCCccccEEEEEEE
Confidence 9999988876431 12578999986532 236799988764
No 68
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.74 E-value=2.9e-17 Score=151.70 Aligned_cols=118 Identities=25% Similarity=0.435 Sum_probs=100.4
Q ss_pred EEEEEEEecCCCCCCCCCCCCCcCcEEEEEecCe-------eeeeccccCCCCCccccEEEEEEeCCCcEEEEEEEeCCC
Q 004208 363 LELGILSAKELLPMKSRDGRGTTDAYCVAKYANK-------WVRTRTVVDSFDPKWNEQYTWEVYDPYTVITLVVFDNCH 435 (768)
Q Consensus 363 l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~~-------~~~T~~~~~t~nP~wne~~~~~v~~~~~~l~v~v~d~~~ 435 (768)
|+|+|++|+||+.. +..|.+||||++++++. .++|++++++.||.|||.|.|.+......|.|+|||++.
T Consensus 2 L~v~Vi~a~~L~~~---d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~ 78 (133)
T cd04033 2 LRVKVLAGIDLAKK---DIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVFDENR 78 (133)
T ss_pred EEEEEEEeECCCcc---cCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCCCCEEEEEEEECCC
Confidence 89999999999885 66789999999999764 479999999999999999999997766789999999998
Q ss_pred CCCCCCCCCceEEEEEeccccccCce------eeeeEeeeecCCCCcccccEEEEEEEE
Q 004208 436 LHPGGAKDSRIGKVRIRLSTLETDRI------YTHSYPLVALLPNGVKKMGEVQLAVRF 488 (768)
Q Consensus 436 ~~~~~~~d~~lG~~~i~l~~l~~~~~------~~~~~~L~~~~~~g~~~~G~i~l~~~~ 488 (768)
++ +|++||++.++++++..+.. ...||+|..... ..+..|+|++++.|
T Consensus 79 ~~----~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~-~~~~~G~l~~~~~~ 132 (133)
T cd04033 79 LT----RDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSS-KSRVKGHLRLYMAY 132 (133)
T ss_pred CC----CCCeeEEEEEEHHHCCCcCccccccccchheeeeecCC-CCcceeEEEEEEee
Confidence 65 89999999999999887543 358999985433 33456999999987
No 69
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.74 E-value=2e-17 Score=153.43 Aligned_cols=104 Identities=22% Similarity=0.416 Sum_probs=88.7
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeEeeeecCCCCCeeeeEEEEEec---------------cCCC
Q 004208 40 FLYVRIVRARDLQVNQVTGTCDPYVEVKIGN-----YKGTTIPFEKKLNPEWNQVFAFTKE---------------RLQA 99 (768)
Q Consensus 40 ~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~Wne~f~f~~~---------------~~~~ 99 (768)
.|.|+|++|+||.. .+|.+||||+|++.+ .+.+|+++++|.||+|||+|.|.+. +...
T Consensus 1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~ 78 (148)
T cd04010 1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK 78 (148)
T ss_pred CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence 38999999999987 578999999999987 5679999999999999999999984 2334
Q ss_pred ceEEEEEEEcCCC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCC
Q 004208 100 ISVELLVKDKMIV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDG 149 (768)
Q Consensus 100 ~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 149 (768)
..|.|+|||++.. +|+|||++.|++..+..+. .....||+|.+..+
T Consensus 79 ~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~----~~~~~W~~L~~~~~ 125 (148)
T cd04010 79 LELRVDLWHASMGGGDVFLGEVRIPLRGLDLQA----GSHQAWYFLQPREE 125 (148)
T ss_pred EEEEEEEEcCCCCCCCceeEEEEEecccccccC----CcCcceeecCCccc
Confidence 6899999999988 9999999999999987651 12578999987643
No 70
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.73 E-value=4.2e-17 Score=147.52 Aligned_cols=117 Identities=29% Similarity=0.504 Sum_probs=100.1
Q ss_pred EEEEEEEecCCCCCCCCCCCCCcCcEEEEEecCe-eeeeccccCCCCCccccEEEEEEeCCCcEEEEEEEeCCCCCCCCC
Q 004208 363 LELGILSAKELLPMKSRDGRGTTDAYCVAKYANK-WVRTRTVVDSFDPKWNEQYTWEVYDPYTVITLVVFDNCHLHPGGA 441 (768)
Q Consensus 363 l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~~-~~~T~~~~~t~nP~wne~~~~~v~~~~~~l~v~v~d~~~~~~~~~ 441 (768)
|.|.|++|+||.++ +..|.+||||+++++++ ..||++++++.||.|||.|.|.+.+....|.|+|||++.++
T Consensus 2 l~v~vi~a~~L~~~---d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~~~---- 74 (121)
T cd04054 2 LYIRIVEGKNLPAK---DITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLS---- 74 (121)
T ss_pred EEEEEEEeeCCcCC---CCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCCCCEEEEEEEECCCCC----
Confidence 78999999999986 66789999999999876 47999999999999999999999877789999999999865
Q ss_pred CCCceEEEEEeccccccC-ceeeeeEeeeecCCCCcccccEEEEEEE
Q 004208 442 KDSRIGKVRIRLSTLETD-RIYTHSYPLVALLPNGVKKMGEVQLAVR 487 (768)
Q Consensus 442 ~d~~lG~~~i~l~~l~~~-~~~~~~~~L~~~~~~g~~~~G~i~l~~~ 487 (768)
+|++||++.+++.++..+ .....|++|...+..+ +..|+|++.++
T Consensus 75 ~d~~iG~~~~~~~~~~~~~~~~~~W~~L~~~~~~~-~~~G~i~l~~~ 120 (121)
T cd04054 75 RDDVIGKVSLTREVISAHPRGIDGWMNLTEVDPDE-EVQGEIHLELS 120 (121)
T ss_pred CCCEEEEEEEcHHHhccCCCCCCcEEECeeeCCCC-ccccEEEEEEE
Confidence 899999999999988764 3467999997654333 35699998875
No 71
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.73 E-value=3.5e-17 Score=143.54 Aligned_cols=101 Identities=26% Similarity=0.394 Sum_probs=82.5
Q ss_pred CeeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC----eEEeeecccCCCCCCcccceEEEEecCC--CCCcEEEEEEec
Q 004208 198 KLWYLRVNVIEAQDLVPKQRNRNPEVFIKAIFGN----VVLKTTVSAKKTVNPTWNEDLMFVAAEP--FDDPLILTVEDK 271 (768)
Q Consensus 198 ~~~~L~V~v~~a~~L~~~d~~~~~dpyV~v~lg~----~~~~T~~i~~~t~nP~wne~f~f~~~~~--~~~~L~i~V~d~ 271 (768)
..+.|+|+|++|+||+ . .|.+||||++++.. .+.+|++.++ |+||+|||+|.|.+... ....|.|+|||+
T Consensus 12 ~~~~L~V~vikA~~L~-~--~g~sDPYVKv~L~~~~k~~k~kT~v~rk-tlnPvfnE~f~F~v~~~~l~~~tL~~~V~d~ 87 (118)
T cd08677 12 QKAELHVNILEAENIS-V--DAGCECYISGCVSVSEGQKEAQTALKKL-ALHTQWEEELVFPLPEEESLDGTLTLTLRCC 87 (118)
T ss_pred cCCEEEEEEEEecCCC-C--CCCCCeEEEEEEcCCcCccEEEcceecC-CCCCccccEEEEeCCHHHhCCcEEEEEEEeC
Confidence 3457999999999998 2 35699999999942 5778888887 99999999999998653 456799999999
Q ss_pred cCCCCCceeEEEEEeccccccccCCCCCCceeEEc
Q 004208 272 LGDNKEECLGRLVLPLSKAGKRFLPLPAAAIWYNL 306 (768)
Q Consensus 272 d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L 306 (768)
|.++++++||++.++++++.. .....+|..|
T Consensus 88 Drfs~~d~IG~v~l~l~~~~~----~~~~~~W~~~ 118 (118)
T cd08677 88 DRFSRHSTLGELRLKLADVSM----MLGAAQWVDL 118 (118)
T ss_pred CCCCCCceEEEEEEccccccC----CccccchhcC
Confidence 999999999999999998642 1234567543
No 72
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.73 E-value=2.6e-17 Score=148.52 Aligned_cols=112 Identities=25% Similarity=0.339 Sum_probs=97.2
Q ss_pred EEEEEEEecCCCCCCCCCCCCCcCcEEEEEecCeeeeeccccCCCCCccccEEEEEEeCC-CcEEEEEEEeCCCCCCCCC
Q 004208 363 LELGILSAKELLPMKSRDGRGTTDAYCVAKYANKWVRTRTVVDSFDPKWNEQYTWEVYDP-YTVITLVVFDNCHLHPGGA 441 (768)
Q Consensus 363 l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~~~~~T~~~~~t~nP~wne~~~~~v~~~-~~~l~v~v~d~~~~~~~~~ 441 (768)
|+|.|++|+||+.+ .+||||++.++++..||++++++.||.|||+|.|.+.++ ...|.++|||++..
T Consensus 2 L~V~Vi~a~~L~~~-------~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~----- 69 (121)
T cd08378 2 LYVRVVKARGLPAN-------SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA----- 69 (121)
T ss_pred EEEEEEEecCCCcc-------cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCC-----
Confidence 89999999999872 689999999999999999999999999999999999874 56899999999863
Q ss_pred CCCceEEEEEeccccccCc-----eeeeeEeeeecCCCCcccccEEEEEEEE
Q 004208 442 KDSRIGKVRIRLSTLETDR-----IYTHSYPLVALLPNGVKKMGEVQLAVRF 488 (768)
Q Consensus 442 ~d~~lG~~~i~l~~l~~~~-----~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 488 (768)
+|++||++.++|+++..+. ....||+|.... +.+..|+|+|.+.|
T Consensus 70 ~~~~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~--~~~~~G~i~l~~~~ 119 (121)
T cd08378 70 KDDFLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKK--GGRVGGELMLAVWF 119 (121)
T ss_pred cCceeeeEEEEhHhCcCCCCCCCCCCcceEEccCCC--CCccceEEEEEEEe
Confidence 5889999999999987532 356899997653 34567999999987
No 73
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.73 E-value=4.6e-17 Score=148.62 Aligned_cols=113 Identities=28% Similarity=0.489 Sum_probs=98.2
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcCC--------
Q 004208 40 FLYVRIVRARDLQVNQVTGTCDPYVEVKIGNYKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMI-------- 111 (768)
Q Consensus 40 ~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~-------- 111 (768)
.|.|+|++|++|+..|..|.+||||++++++++.+|++++++.||+|||+|.|.+... ...|.|+|||+|.
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~-~~~l~i~v~d~d~~~~~~~~~ 80 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNS-SDRIKVRVWDEDDDIKSRLKQ 80 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCC-CCEEEEEEEECCCCcccccce
Confidence 5899999999999999889999999999999999999999999999999999998654 5689999999985
Q ss_pred ----CCCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCCC-ccceEEEEEE
Q 004208 112 ----VNGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGS-RARGELMFAI 160 (768)
Q Consensus 112 ----~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~-~~~G~i~l~i 160 (768)
..+++||++.+++.++... ..+|+.|.+..+. ...|+|.+++
T Consensus 81 ~~~~~~~~~iG~~~i~l~~~~~~-------~~~w~~L~~~~~~~~~~G~i~~~~ 127 (127)
T cd04027 81 KFTRESDDFLGQTIIEVRTLSGE-------MDVWYNLEKRTDKSAVSGAIRLHI 127 (127)
T ss_pred eccccCCCcceEEEEEhHHccCC-------CCeEEECccCCCCCcEeEEEEEEC
Confidence 2689999999999987532 4799999976543 4789998863
No 74
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.73 E-value=1.8e-17 Score=151.45 Aligned_cols=114 Identities=33% Similarity=0.516 Sum_probs=96.4
Q ss_pred CCCcccccccccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeEeeeecCCCCCeeeeEEEEEec---
Q 004208 24 GRERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGN-----YKGTTIPFEKKLNPEWNQVFAFTKE--- 95 (768)
Q Consensus 24 ~~~~~~~~~~~~~~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~Wne~f~f~~~--- 95 (768)
|..++++.|+.. .+.|.|+|++|+||+..+..+.+||||++++.+ .+.+|++++++.||+|||+|.|.+.
T Consensus 3 G~l~~~l~~~~~--~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~ 80 (125)
T cd04031 3 GRIQIQLWYDKV--TSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRE 80 (125)
T ss_pred EEEEEEEEEeCC--CCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHH
Confidence 346788888864 578999999999999998889999999999975 5779999999999999999999853
Q ss_pred cCCCceEEEEEEEcCCC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcc
Q 004208 96 RLQAISVELLVKDKMIV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLE 145 (768)
Q Consensus 96 ~~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 145 (768)
++....|.|+|||++.. ++++||++.++|.+.... ....||+|+
T Consensus 81 ~l~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~~~~~------~~~~W~~L~ 125 (125)
T cd04031 81 TLKERTLEVTVWDYDRDGENDFLGEVVIDLADALLD------DEPHWYPLQ 125 (125)
T ss_pred HhCCCEEEEEEEeCCCCCCCcEeeEEEEeccccccc------CCcceEECc
Confidence 33467899999999988 899999999999983322 146899985
No 75
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.73 E-value=3.8e-17 Score=148.53 Aligned_cols=103 Identities=26% Similarity=0.357 Sum_probs=88.2
Q ss_pred eEEEEEEEEeecCCCCCCC-CCCCcEEEEEEC-----CeEEeeecccCCCCCCcccceEEEEecCC--CCCcEEEEEEec
Q 004208 200 WYLRVNVIEAQDLVPKQRN-RNPEVFIKAIFG-----NVVLKTTVSAKKTVNPTWNEDLMFVAAEP--FDDPLILTVEDK 271 (768)
Q Consensus 200 ~~L~V~v~~a~~L~~~d~~-~~~dpyV~v~lg-----~~~~~T~~i~~~t~nP~wne~f~f~~~~~--~~~~L~i~V~d~ 271 (768)
+.|.|+|++|+||+.++.. |.+||||++++. ..+.+|+++++ +.||+|||+|.|.+... ....|.|+|||+
T Consensus 15 ~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~-t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d~ 93 (125)
T cd08393 15 RELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKK-TLNPVFNETLRYKVEREELPTRVLNLSVWHR 93 (125)
T ss_pred CEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcC-CCCCccCceEEEECCHHHhCCCEEEEEEEeC
Confidence 3599999999999999875 889999999993 24579999987 99999999999998642 456899999999
Q ss_pred cCCCCCceeEEEEEeccccccccCCCCCCceeEEcc
Q 004208 272 LGDNKEECLGRLVLPLSKAGKRFLPLPAAAIWYNLE 307 (768)
Q Consensus 272 d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~ 307 (768)
+..+++++||++.++|.++.. ......||+|+
T Consensus 94 ~~~~~~~~iG~~~i~L~~~~~----~~~~~~W~~L~ 125 (125)
T cd08393 94 DSLGRNSFLGEVEVDLGSWDW----SNTQPTWYPLQ 125 (125)
T ss_pred CCCCCCcEeEEEEEecCcccc----CCCCcceEECc
Confidence 999999999999999999863 24567899874
No 76
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.73 E-value=3.5e-17 Score=148.58 Aligned_cols=117 Identities=25% Similarity=0.509 Sum_probs=100.1
Q ss_pred eEEEEEEEEecCCCCCCCCC---CCCCcCcEEEEEecCeeeeeccccCCCCCccccEEEEEEeC-CCcEEEEEEEeCCCC
Q 004208 361 GVLELGILSAKELLPMKSRD---GRGTTDAYCVAKYANKWVRTRTVVDSFDPKWNEQYTWEVYD-PYTVITLVVFDNCHL 436 (768)
Q Consensus 361 g~l~v~v~~a~~L~~~~~~~---~~g~~dpyv~v~~g~~~~~T~~~~~t~nP~wne~~~~~v~~-~~~~l~v~v~d~~~~ 436 (768)
|.|+|.|++|+||+..+... ..|.+||||+++++++.++|++++++.||.|||.|.|.+.+ +...|.|+|||++..
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~ 80 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPD 80 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCC
Confidence 67999999999999864211 14689999999999999999999999999999999999986 467999999999873
Q ss_pred CCCCCCCCceEEEEEeccccccCceeeeeEeeeecCCCCcccccEEEEEEEE
Q 004208 437 HPGGAKDSRIGKVRIRLSTLETDRIYTHSYPLVALLPNGVKKMGEVQLAVRF 488 (768)
Q Consensus 437 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 488 (768)
+|++||++.++|+++..+.....||+|... ..|+|+|++++
T Consensus 81 -----~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~------~~G~~~~~~~~ 121 (121)
T cd08391 81 -----KDDFLGRLSIDLGSVEKKGFIDEWLPLEDV------KSGRLHLKLEW 121 (121)
T ss_pred -----CCCcEEEEEEEHHHhcccCccceEEECcCC------CCceEEEEEeC
Confidence 688999999999999888777899999643 45999988763
No 77
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.73 E-value=9.6e-17 Score=146.30 Aligned_cols=120 Identities=20% Similarity=0.286 Sum_probs=101.4
Q ss_pred eeEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEecCeeeeeccccCCCCCccccEEEEEEeCCCcEEEEEEEeCCCCCCC
Q 004208 360 IGVLELGILSAKELLPMKSRDGRGTTDAYCVAKYANKWVRTRTVVDSFDPKWNEQYTWEVYDPYTVITLVVFDNCHLHPG 439 (768)
Q Consensus 360 ~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~~~~~T~~~~~t~nP~wne~~~~~v~~~~~~l~v~v~d~~~~~~~ 439 (768)
.+.|+|+|++|+||... +..|.+||||++.++++.+||++++++.||.|||.|.|.+.++...|.|+|||++.+
T Consensus 2 ~~~~~V~v~~A~~L~~~---d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~~--- 75 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQ---DSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPIKIQVWNSNLL--- 75 (126)
T ss_pred cEEEEEEEEeCcCCCCC---CCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCCCCEEEEEEEECCCC---
Confidence 35799999999999885 677899999999999999999999999999999999999988888999999999874
Q ss_pred CCCCCceEEEEEeccccccCceeeeeEeeeecC-CCCcccccEEEEEEEEE
Q 004208 440 GAKDSRIGKVRIRLSTLETDRIYTHSYPLVALL-PNGVKKMGEVQLAVRFT 489 (768)
Q Consensus 440 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~-~~g~~~~G~i~l~~~~~ 489 (768)
+|++||++.++++.+..+. ..+|+|.... ....+..|+|.+++...
T Consensus 76 --~d~~lG~~~~~l~~~~~~~--~~~~~l~~~~~~~~~~~~G~i~~~~~~~ 122 (126)
T cd04046 76 --CDEFLGQATLSADPNDSQT--LRTLPLRKRGRDAAGEVPGTISVKVTSS 122 (126)
T ss_pred --CCCceEEEEEecccCCCcC--ceEEEcccCCCCCCCCCCCEEEEEEEEc
Confidence 4899999999999865433 4788886332 13445679999998773
No 78
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.72 E-value=6.7e-17 Score=146.02 Aligned_cols=113 Identities=23% Similarity=0.366 Sum_probs=97.9
Q ss_pred EEEEEEEecCCCCCCCCCCCCCcCcEEEEEecC---eeeeeccccCCCCCccccEEEEEEeCC-CcEEEEEEEeCCCCCC
Q 004208 363 LELGILSAKELLPMKSRDGRGTTDAYCVAKYAN---KWVRTRTVVDSFDPKWNEQYTWEVYDP-YTVITLVVFDNCHLHP 438 (768)
Q Consensus 363 l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~---~~~~T~~~~~t~nP~wne~~~~~v~~~-~~~l~v~v~d~~~~~~ 438 (768)
|+|+|++|+||+.. +..+.+||||++++++ +.+||++++++.||.|||.|.|.+... ...|.|+|||++.+
T Consensus 2 L~V~vi~a~~L~~~---~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-- 76 (119)
T cd04036 2 LTVRVLRATNITKG---DLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV-- 76 (119)
T ss_pred eEEEEEEeeCCCcc---CCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC--
Confidence 78999999999885 5678999999999963 679999999999999999999999764 45799999999873
Q ss_pred CCCCCCceEEEEEeccccccCceeeeeEeeeecCCCCcccccEEEEEEEEE
Q 004208 439 GGAKDSRIGKVRIRLSTLETDRIYTHSYPLVALLPNGVKKMGEVQLAVRFT 489 (768)
Q Consensus 439 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~ 489 (768)
+|++||++.++++++..+.....||+|... ..|++++++.++
T Consensus 77 ---~~~~iG~~~~~l~~l~~g~~~~~~~~L~~~------~~g~l~~~~~~~ 118 (119)
T cd04036 77 ---MDDHLGTVLFDVSKLKLGEKVRVTFSLNPQ------GKEELEVEFLLE 118 (119)
T ss_pred ---CCcccEEEEEEHHHCCCCCcEEEEEECCCC------CCceEEEEEEee
Confidence 688999999999999999888999999532 358899888764
No 79
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.72 E-value=4.3e-17 Score=149.30 Aligned_cols=115 Identities=24% Similarity=0.410 Sum_probs=98.9
Q ss_pred CCCcccccccccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeEeeeecCCCCCeeeeEEEEEec--c
Q 004208 24 GRERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGN-----YKGTTIPFEKKLNPEWNQVFAFTKE--R 96 (768)
Q Consensus 24 ~~~~~~~~~~~~~~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~Wne~f~f~~~--~ 96 (768)
|..++++.|+- ..+.|.|+|++|+||+..+..+.+||||++.+.+ .+++|++++++.||+|||+|.|.+. +
T Consensus 3 G~l~~~l~y~~--~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~ 80 (127)
T cd04030 3 GRIQLTIRYSS--QRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEE 80 (127)
T ss_pred eEEEEEEEEeC--CCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHH
Confidence 35688889985 4689999999999999999889999999999963 5789999999999999999999974 4
Q ss_pred CCCceEEEEEEEcCCC---CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcc
Q 004208 97 LQAISVELLVKDKMIV---NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLE 145 (768)
Q Consensus 97 ~~~~~L~i~V~d~~~~---~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 145 (768)
+....|.|.|||.+.. ++++||++.+++.++..+. ....||+|+
T Consensus 81 l~~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~~-----~~~~W~~L~ 127 (127)
T cd04030 81 LKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSK-----GFTQWYDLT 127 (127)
T ss_pred hcCCEEEEEEEECCcccCCCCceEEEEEEecccccccC-----CccceEECc
Confidence 4567899999999873 7999999999999996652 357899884
No 80
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=99.72 E-value=4.7e-16 Score=173.23 Aligned_cols=285 Identities=18% Similarity=0.270 Sum_probs=183.0
Q ss_pred CCeeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeE--EeeecccCCCCCCcccceEEEEecCCCCCcEEEEEEeccCC
Q 004208 197 PKLWYLRVNVIEAQDLVPKQRNRNPEVFIKAIFGNVV--LKTTVSAKKTVNPTWNEDLMFVAAEPFDDPLILTVEDKLGD 274 (768)
Q Consensus 197 p~~~~L~V~v~~a~~L~~~d~~~~~dpyV~v~lg~~~--~~T~~i~~~t~nP~wne~f~f~~~~~~~~~L~i~V~d~d~~ 274 (768)
|...-++|.|++|-+|.+.|.+|.+||||.+.+|++. -++..+.+ |+||+|++.|.+....+.+..+.++|||+|..
T Consensus 610 pi~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~-tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~ 688 (1105)
T KOG1326|consen 610 PIKCLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPN-TLNPVFGKMFELECLLPFEKDLIVEVYDHDLE 688 (1105)
T ss_pred cceeeEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcC-CCCcHHHHHHHhhcccchhhcceeEEEEeecc
Confidence 5566799999999999999999999999999999876 45566777 99999999999999988899999999999999
Q ss_pred CCCceeEEEEEeccc-cccccCCCCCCceeEEcccCccCcc---------------ccccccccceEEEEEecCCCcccc
Q 004208 275 NKEECLGRLVLPLSK-AGKRFLPLPAAAIWYNLERNIANGE---------------EKKDVRFASRICLRFSLDGGYHVF 338 (768)
Q Consensus 275 ~~d~~lG~~~i~l~~-l~~~~~~~~~~~~w~~L~~~~~~g~---------------~~~~~~~~g~i~l~v~~~~~~~~~ 338 (768)
+.|+.||+..++|+. +......+....+-|...+....-+ ....-.+.+.. ..+.+.|.....
T Consensus 689 ~~d~~iget~iDLEnR~~T~~~a~cglaq~y~v~g~n~W~d~~~ps~iL~~~~Q~~~i~~P~~~~e~-~~i~~~g~~~~~ 767 (1105)
T KOG1326|consen 689 AQDEKIGETTIDLENRWLTRHRARCGLAQTYCVSGANIWRDRMDPSQILKEHCQPGGIPRPYYSYEV-SAIKWKGESDIY 767 (1105)
T ss_pred cccchhhceehhhhhcccCcCCcccCccceeeeeccccccCccCHHHHHHHhhcccCCCCCeecCCc-ceEEecChhhhh
Confidence 999999999999865 2222222233333332222110000 00000000110 111111110000
Q ss_pred c-------------------------------Ccc---cccCccccc----cccCC------------------CCeeeE
Q 004208 339 D-------------------------------EAT---NYSSDLRST----MKQLW------------------PPVIGV 362 (768)
Q Consensus 339 ~-------------------------------~~~---~~~~~~~~~----~~~l~------------------~~~~g~ 362 (768)
+ +.. ...++..|. .-++| .+....
T Consensus 768 d~~~~k~~~~~~L~~~~~r~~~~i~~~~~lvpehvetrtl~~~~~p~ieqgklq~Wvd~fp~d~~~ppl~itpr~~~~~~ 847 (1105)
T KOG1326|consen 768 DEKEAKTIEVPHLGNAWERLALWILMNQGLVPEHVETRTLHSKAFPNIEQGKLQMWVDFFPKDLYAPPLNITPRKPKKYE 847 (1105)
T ss_pred cccccCCCCCcccchHHHHHHHHhhhhcCcCCcccccccccCccccchhhcccchhhhhcccccCCCCCCCCCCChhhee
Confidence 0 000 000000000 00111 345567
Q ss_pred EEEEEEEecCCCCCCCCCCCC--CcCcEEEEEe-cC--eeeeeccccCCC----CCccccEEEEEE--------------
Q 004208 363 LELGILSAKELLPMKSRDGRG--TTDAYCVAKY-AN--KWVRTRTVVDSF----DPKWNEQYTWEV-------------- 419 (768)
Q Consensus 363 l~v~v~~a~~L~~~~~~~~~g--~~dpyv~v~~-g~--~~~~T~~~~~t~----nP~wne~~~~~v-------------- 419 (768)
++|.|..-.++..-+. ++.| .+|.||+--+ |. ++.+|.+.++++ |-.|.-.|.|.-
T Consensus 848 lrviiWnt~~v~l~dd-~~~ge~~sdIyv~gw~~gdee~kq~tdvhyrsl~ge~~fnwr~~f~~Dyl~ae~~~vi~kke~ 926 (1105)
T KOG1326|consen 848 LRVIIWNTDKVRLNDD-EITGEKMSDIYVKGWVLGDEEEKQKTDVHYRSLTGEGNFNWRFVFPFDYLPAEQLCVIAKKEY 926 (1105)
T ss_pred EEEEEeeccceeecCc-cceeeeccceEEecccccchhhhcccceeeeeccCCcccceeeecccccchHhhHhhhhhhhh
Confidence 9999998888776432 2333 6999999555 44 458888887654 556643333311
Q ss_pred ----eC----CCcEEEEEEEeCCCCCCCCCCCCceEEEEEecccccc----------------------CceeeeeEeee
Q 004208 420 ----YD----PYTVITLVVFDNCHLHPGGAKDSRIGKVRIRLSTLET----------------------DRIYTHSYPLV 469 (768)
Q Consensus 420 ----~~----~~~~l~v~v~d~~~~~~~~~~d~~lG~~~i~l~~l~~----------------------~~~~~~~~~L~ 469 (768)
.+ .-..|.|+|||.|.|+ +|++||..+++|+++.. .+.+.+|+|+.
T Consensus 927 ~ws~dete~k~p~rl~iqiWD~d~fs----~Dd~Lg~lELdL~~~~~pa~sa~~c~~~~~~~~~vslFe~k~v~GWwP~~ 1002 (1105)
T KOG1326|consen 927 SWSLDETEFKIPARLIIQIWDNDKFS----KDDFLGALELDLSDMPAPAKSAKKCSLYMKKDKTVSLFEQKTVKGWWPCQ 1002 (1105)
T ss_pred ccccccccccCchheEEEecccCccC----hhhhhhheeechhhCcCCCCCHHHCCceeccCcceehhhcccccccceee
Confidence 00 0136999999999988 99999999999998652 34578999999
Q ss_pred ecCCCCcccccEEEEEEEE
Q 004208 470 ALLPNGVKKMGEVQLAVRF 488 (768)
Q Consensus 470 ~~~~~g~~~~G~i~l~~~~ 488 (768)
+.+.....-+|++++.+.+
T Consensus 1003 a~~~~~~~l~Gkvem~lei 1021 (1105)
T KOG1326|consen 1003 AEEGDAKVLAGKVEMSLEI 1021 (1105)
T ss_pred ecCCCcceecceeeeehhh
Confidence 8854444468999988877
No 81
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.72 E-value=9.7e-17 Score=145.87 Aligned_cols=106 Identities=23% Similarity=0.325 Sum_probs=89.2
Q ss_pred eEEEEEEEEeecCCCCCCC-CCCCcEEEEEEC-----CeEEeeecccCCCCCCcccceEEEEecCC--CCCcEEEEEEec
Q 004208 200 WYLRVNVIEAQDLVPKQRN-RNPEVFIKAIFG-----NVVLKTTVSAKKTVNPTWNEDLMFVAAEP--FDDPLILTVEDK 271 (768)
Q Consensus 200 ~~L~V~v~~a~~L~~~d~~-~~~dpyV~v~lg-----~~~~~T~~i~~~t~nP~wne~f~f~~~~~--~~~~L~i~V~d~ 271 (768)
+.|.|+|++|+||+.++.. |.+||||++++. ..+.||+++++ +.||+|||+|.|.+... ....|.+.|||.
T Consensus 15 ~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~-t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~~ 93 (128)
T cd08392 15 SCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKG-TVNPVFNETLKYVVEADLLSSRQLQVSVWHS 93 (128)
T ss_pred CEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccC-CCCCccceEEEEEcCHHHhCCcEEEEEEEeC
Confidence 3699999999999999875 899999999993 24779999987 99999999999997553 346899999999
Q ss_pred cCCCCCceeEEEEEeccccccccCCCCCCceeEEcc
Q 004208 272 LGDNKEECLGRLVLPLSKAGKRFLPLPAAAIWYNLE 307 (768)
Q Consensus 272 d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~ 307 (768)
+..+++++||++.|+|+++... +......+||+|.
T Consensus 94 ~~~~~~~~lG~~~i~L~~~~~~-~~~~~~~~W~~l~ 128 (128)
T cd08392 94 RTLKRRVFLGEVLIPLADWDFE-DTDSQRFLWYPLN 128 (128)
T ss_pred CCCcCcceEEEEEEEcCCcccC-CCCccccceEECc
Confidence 9888999999999999998532 2245678999874
No 82
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.71 E-value=4.2e-17 Score=147.92 Aligned_cols=115 Identities=19% Similarity=0.292 Sum_probs=98.3
Q ss_pred CCCcccccccccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeEeeeecCCCCCeeeeEEEEE-ec--cC
Q 004208 24 GRERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGN---YKGTTIPFEKKLNPEWNQVFAFT-KE--RL 97 (768)
Q Consensus 24 ~~~~~~~~~~~~~~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~---~~~~T~~~~~t~nP~Wne~f~f~-~~--~~ 97 (768)
|...+++.|+.. .+.|.|+|++|+||+..+.+|.+||||++.+.+ ++.+|+++++ .||+|||+|.|. +. ++
T Consensus 3 G~l~~sl~Y~~~--~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l 79 (124)
T cd08389 3 GDLDVAFEYDPS--ARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEEL 79 (124)
T ss_pred EEEEEEEEECCC--CCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHh
Confidence 356889999964 478999999999999999889999999988754 5779998887 999999999998 53 45
Q ss_pred CCceEEEEEEEcCCC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEccc
Q 004208 98 QAISVELLVKDKMIV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEA 146 (768)
Q Consensus 98 ~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 146 (768)
....|.|+|||++.. ++++||++.|+|.++.... ....|++|++
T Consensus 80 ~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~~~-----~~~~w~~L~p 124 (124)
T cd08389 80 NNMALRFRLYGVERMRKERLIGEKVVPLSQLNLEG-----ETTVWLTLEP 124 (124)
T ss_pred ccCEEEEEEEECCCcccCceEEEEEEeccccCCCC-----CceEEEeCCC
Confidence 578899999999988 8999999999999996652 3689999873
No 83
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.71 E-value=3.6e-17 Score=146.90 Aligned_cols=109 Identities=18% Similarity=0.373 Sum_probs=90.1
Q ss_pred CcccccccccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeEeeeecCCCCCeeeeEEEEEeccC-CC
Q 004208 26 ERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGN-----YKGTTIPFEKKLNPEWNQVFAFTKERL-QA 99 (768)
Q Consensus 26 ~~~~~~~~~~~~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~Wne~f~f~~~~~-~~ 99 (768)
.++++.|. .+.|.|+|++|+||+..+ .|.+||||++++.+ .+.+|++++++.||+|||+|.|.+... ..
T Consensus 3 l~l~~~~~----~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~ 77 (119)
T cd08685 3 LKLSIEGQ----NRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQ 77 (119)
T ss_pred EEEEEEEc----CCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhC
Confidence 45555552 478999999999999988 88999999999975 366899999999999999999997532 13
Q ss_pred ceEEEEEEEcCCC--CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEc
Q 004208 100 ISVELLVKDKMIV--NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRL 144 (768)
Q Consensus 100 ~~L~i~V~d~~~~--~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 144 (768)
..|.|+|||++.. ++++||++.|++.++..+. ....||.|
T Consensus 78 ~~l~v~V~~~~~~~~~~~~lG~~~i~l~~~~~~~-----~~~~Wy~l 119 (119)
T cd08685 78 KRLLVTVWNKLSKSRDSGLLGCMSFGVKSIVNQK-----EISGWYYL 119 (119)
T ss_pred CEEEEEEECCCCCcCCCEEEEEEEecHHHhccCc-----cccceEeC
Confidence 5789999999987 4799999999999997542 24789976
No 84
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.71 E-value=1.6e-16 Score=145.38 Aligned_cols=115 Identities=23% Similarity=0.358 Sum_probs=100.7
Q ss_pred EEEeecCCCCCCCCCCCcEEEEEECCeeeEeeeecCCCCCeeeeEEEEEeccC--CCceEEEEEEEcCCC-CCceeEEEE
Q 004208 45 IVRARDLQVNQVTGTCDPYVEVKIGNYKGTTIPFEKKLNPEWNQVFAFTKERL--QAISVELLVKDKMIV-NGDFIGKIK 121 (768)
Q Consensus 45 i~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~Wne~f~f~~~~~--~~~~L~i~V~d~~~~-~d~~lG~~~ 121 (768)
|++|++|+. ..|.+||||++++++.+.+|++++++.||+|||+|.|.+... ....|.|+|||++.. +|++||++.
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~ 79 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSAT 79 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEE
Confidence 789999987 678999999999999999999999999999999999998653 468999999999988 899999999
Q ss_pred EcCCCCCCCCCCCCCCCCeEEEcccCCCCccceEEEEEEEEcccC
Q 004208 122 IDMPDIPKRVPPDSPLAPEWKRLEAKDGSRARGELMFAIWFGTQA 166 (768)
Q Consensus 122 i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~i~~~~~~ 166 (768)
+++.++..+. ....|++|.+..+....|+|+++++|.+..
T Consensus 80 ~~l~~l~~~~-----~~~~~~~L~~~~~~~~~~~l~l~~~~~~~~ 119 (127)
T cd08373 80 VSLQDLVSEG-----LLEVTEPLLDSNGRPTGATISLEVSYQPPD 119 (127)
T ss_pred EEhhHcccCC-----ceEEEEeCcCCCCCcccEEEEEEEEEeCCC
Confidence 9999997652 257899998776655679999999997644
No 85
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.71 E-value=6.8e-17 Score=142.27 Aligned_cols=93 Identities=19% Similarity=0.252 Sum_probs=82.2
Q ss_pred cEEEEEEEEeecCCCCCC----CCCCCcEEEEEECCeeeEeeeecCCCCCeeeeEEEEEeccC-CCceEEEEEEEcCCC-
Q 004208 39 EFLYVRIVRARDLQVNQV----TGTCDPYVEVKIGNYKGTTIPFEKKLNPEWNQVFAFTKERL-QAISVELLVKDKMIV- 112 (768)
Q Consensus 39 ~~L~V~i~~a~~L~~~d~----~g~~dPyv~v~~~~~~~~T~~~~~t~nP~Wne~f~f~~~~~-~~~~L~i~V~d~~~~- 112 (768)
|.|.|+|++|++|+..+. .+.+||||+++++++++||++++++.||+|||+|.|.+.+. ....|.|+|||++..
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~ 80 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFS 80 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCC
Confidence 689999999999998763 23589999999999999999999999999999999998643 245899999999998
Q ss_pred CCceeEEEEEcCCCCCCCC
Q 004208 113 NGDFIGKIKIDMPDIPKRV 131 (768)
Q Consensus 113 ~d~~lG~~~i~l~~l~~~~ 131 (768)
+|++||++.++|.+|..+.
T Consensus 81 ~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 81 FNDYVATGSLSVQELLNAA 99 (108)
T ss_pred CCcceEEEEEEHHHHHhhC
Confidence 9999999999999997664
No 86
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.71 E-value=7.4e-17 Score=147.25 Aligned_cols=115 Identities=30% Similarity=0.481 Sum_probs=98.4
Q ss_pred CCCcccccccccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeeeEeeeecCCCCCeeeeEEEEEe---ccC
Q 004208 24 GRERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIG---NYKGTTIPFEKKLNPEWNQVFAFTK---ERL 97 (768)
Q Consensus 24 ~~~~~~~~~~~~~~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~---~~~~~T~~~~~t~nP~Wne~f~f~~---~~~ 97 (768)
|...+++.|+.. .+.|.|+|++|+||+..|..+.+||||++.+. +++.+|++++++.||+|||+|.|.+ +.+
T Consensus 3 G~l~~~l~y~~~--~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l 80 (125)
T cd08386 3 GRIQFSVSYDFQ--ESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKL 80 (125)
T ss_pred cEEEEEEEECCC--CCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHh
Confidence 356788889864 57899999999999999988999999999994 3678999999999999999999974 234
Q ss_pred CCceEEEEEEEcCCC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcc
Q 004208 98 QAISVELLVKDKMIV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLE 145 (768)
Q Consensus 98 ~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 145 (768)
....|.|+|||++.. ++++||++.+++.++..+. ....|+.|.
T Consensus 81 ~~~~l~~~v~d~d~~~~~~~iG~~~i~l~~l~~~~-----~~~~W~~l~ 124 (125)
T cd08386 81 QQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTE-----EQTFWKDLK 124 (125)
T ss_pred CCCEEEEEEEeCCCCcCCcEeeEEEEecccccCCC-----CcceEEecC
Confidence 456899999999988 8999999999999997653 257899885
No 87
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.71 E-value=1.5e-16 Score=144.42 Aligned_cols=114 Identities=18% Similarity=0.293 Sum_probs=97.3
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEC-CeeeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcCCC-C--Cce
Q 004208 41 LYVRIVRARDLQVNQVTGTCDPYVEVKIG-NYKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIV-N--GDF 116 (768)
Q Consensus 41 L~V~i~~a~~L~~~d~~g~~dPyv~v~~~-~~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~~-~--d~~ 116 (768)
|+|+|++|++|+..+..+.+||||++.++ .+.++|++++++.||+|||+|.|.+.. ...|.|+|||++.. + |++
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~--~~~l~i~V~d~~~~~~~~d~~ 79 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP--SSIITIQVFDQKKFKKKDQGF 79 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC--CCEEEEEEEECCCCCCCCCce
Confidence 79999999999999988999999999997 578899999999999999999999976 67999999999987 3 589
Q ss_pred eEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCC---CccceEEEEEE
Q 004208 117 IGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDG---SRARGELMFAI 160 (768)
Q Consensus 117 lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~---~~~~G~i~l~i 160 (768)
||++.+++.++..... ....|++|.+... ....|+|.+++
T Consensus 80 lG~~~i~l~~l~~~~~----~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 80 LGCVRIRANAVLPLKD----TGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred EeEEEEEHHHccccCC----CccceeEeecCCCCCCceEeeEEEEEe
Confidence 9999999999865432 2467999976653 34678888764
No 88
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.70 E-value=1.7e-16 Score=144.63 Aligned_cols=103 Identities=21% Similarity=0.394 Sum_probs=90.1
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeEEeeecccCCCCCCcccceEEEEecCC--CCCcEEEEEEeccCC
Q 004208 200 WYLRVNVIEAQDLVPKQRNRNPEVFIKAIFG---NVVLKTTVSAKKTVNPTWNEDLMFVAAEP--FDDPLILTVEDKLGD 274 (768)
Q Consensus 200 ~~L~V~v~~a~~L~~~d~~~~~dpyV~v~lg---~~~~~T~~i~~~t~nP~wne~f~f~~~~~--~~~~L~i~V~d~d~~ 274 (768)
+.|.|+|++|+||+..+..+.+||||++.+. ++..+|+++++ +.||.|||+|.|.+... ....|.|+|||++..
T Consensus 16 ~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~-t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~~~ 94 (124)
T cd08387 16 GILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKK-TLNPEFDESFVFEVPPQELPKRTLEVLLYDFDQF 94 (124)
T ss_pred CEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcC-CCCCCcccEEEEeCCHHHhCCCEEEEEEEECCCC
Confidence 5799999999999999988999999999993 45789999987 99999999999997654 345799999999988
Q ss_pred CCCceeEEEEEeccccccccCCCCCCceeEEcc
Q 004208 275 NKEECLGRLVLPLSKAGKRFLPLPAAAIWYNLE 307 (768)
Q Consensus 275 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~ 307 (768)
+++++||++.++++++.. ......||+|+
T Consensus 95 ~~~~~iG~~~i~l~~~~~----~~~~~~W~~l~ 123 (124)
T cd08387 95 SRDECIGVVELPLAEVDL----SEKLDLWRKIQ 123 (124)
T ss_pred CCCceeEEEEEecccccC----CCCcceEEECc
Confidence 899999999999999873 23678899986
No 89
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.70 E-value=1.4e-16 Score=145.38 Aligned_cols=119 Identities=31% Similarity=0.385 Sum_probs=99.8
Q ss_pred eeEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEecC--eeeeeccccCCCCCccccEEEEEEeCCCcEEEEEEEeCCCCC
Q 004208 360 IGVLELGILSAKELLPMKSRDGRGTTDAYCVAKYAN--KWVRTRTVVDSFDPKWNEQYTWEVYDPYTVITLVVFDNCHLH 437 (768)
Q Consensus 360 ~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~--~~~~T~~~~~t~nP~wne~~~~~v~~~~~~l~v~v~d~~~~~ 437 (768)
+|.|+|+|++|+||+..+ ...+.+||||++++++ +.++|+++.++.||.|||.|.|.+.+..+.|.|+|||++..+
T Consensus 1 ~g~l~v~v~~a~~L~~~~--~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~~~ 78 (124)
T cd04044 1 IGVLAVTIKSARGLKGSD--IIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSLTEPLNLTVYDFNDKR 78 (124)
T ss_pred CeEEEEEEEcccCCCccc--ccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCCCCCEEEEEEEecCCCC
Confidence 488999999999998631 2446799999999987 789999999999999999999999866789999999998854
Q ss_pred CCCCCCCceEEEEEeccccccCceee-eeEeeeecCCCCcccccEEEEEEEE
Q 004208 438 PGGAKDSRIGKVRIRLSTLETDRIYT-HSYPLVALLPNGVKKMGEVQLAVRF 488 (768)
Q Consensus 438 ~~~~~d~~lG~~~i~l~~l~~~~~~~-~~~~L~~~~~~g~~~~G~i~l~~~~ 488 (768)
+|++||++.++|.++..+.... .++++. .+.+..|+|++.++|
T Consensus 79 ----~d~~iG~~~~~l~~l~~~~~~~~~~~~~~----~~~k~~G~i~~~l~~ 122 (124)
T cd04044 79 ----KDKLIGTAEFDLSSLLQNPEQENLTKNLL----RNGKPVGELNYDLRF 122 (124)
T ss_pred ----CCceeEEEEEEHHHhccCccccCcchhhh----cCCccceEEEEEEEe
Confidence 8999999999999999876554 344443 234456999999998
No 90
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.70 E-value=5.6e-17 Score=148.00 Aligned_cols=118 Identities=23% Similarity=0.334 Sum_probs=101.0
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-eeeEeeeec-CCCCCeeeeEEEEEeccCC----CceEEEEEEEcCCC-
Q 004208 40 FLYVRIVRARDLQVNQVTGTCDPYVEVKIGN-YKGTTIPFE-KKLNPEWNQVFAFTKERLQ----AISVELLVKDKMIV- 112 (768)
Q Consensus 40 ~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~-~~~~T~~~~-~t~nP~Wne~f~f~~~~~~----~~~L~i~V~d~~~~- 112 (768)
.|.|+|++|++|+..+..+.+||||++++++ ++.+|++.. ++.||+|||+|.|.+.+.. ...|.|+|||++.+
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~ 80 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSL 80 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCC
Confidence 4899999999999988889999999999998 888999874 6899999999999987653 68899999999986
Q ss_pred CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCCCccceEEEE
Q 004208 113 NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGSRARGELMF 158 (768)
Q Consensus 113 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l 158 (768)
+|++||++.+++.++..+...+......||+|..+.| +..|.|.+
T Consensus 81 ~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g-~~~G~~~~ 125 (125)
T cd04051 81 GDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSG-KPQGVLNF 125 (125)
T ss_pred CCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCC-CcCeEEeC
Confidence 8999999999999998765433344678999998664 47898864
No 91
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.70 E-value=5.3e-17 Score=144.50 Aligned_cols=99 Identities=24% Similarity=0.369 Sum_probs=86.4
Q ss_pred cEEEEEEEEeecCCCCCCC-CCCCcEEEEEECC---eeeEeeeecCCCCCeeeeEEEEEeccC---CCceEEEEEEEcCC
Q 004208 39 EFLYVRIVRARDLQVNQVT-GTCDPYVEVKIGN---YKGTTIPFEKKLNPEWNQVFAFTKERL---QAISVELLVKDKMI 111 (768)
Q Consensus 39 ~~L~V~i~~a~~L~~~d~~-g~~dPyv~v~~~~---~~~~T~~~~~t~nP~Wne~f~f~~~~~---~~~~L~i~V~d~~~ 111 (768)
|.|+|+|++|++|+..|.. +.+||||+|++.+ ...+|+++++|.||+|||+|.|.+... ....|.|+|||++.
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 6899999999999999887 8999999999854 467999999999999999999987542 35789999999999
Q ss_pred C-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcc
Q 004208 112 V-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLE 145 (768)
Q Consensus 112 ~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 145 (768)
. +|++||++.+++.++... ..|+++.
T Consensus 81 ~~~dd~lG~~~i~l~~l~~~--------~~~~~~~ 107 (111)
T cd04041 81 FTADDRLGRVEIDLKELIED--------RNWMGRR 107 (111)
T ss_pred CCCCCcceEEEEEHHHHhcC--------CCCCccc
Confidence 8 899999999999999743 5677765
No 92
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.70 E-value=3.1e-16 Score=144.38 Aligned_cols=115 Identities=27% Similarity=0.407 Sum_probs=98.4
Q ss_pred cEEEEEEEEeecCCCCCCC----------CCCCcEEEEEECCee-eEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEE
Q 004208 39 EFLYVRIVRARDLQVNQVT----------GTCDPYVEVKIGNYK-GTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVK 107 (768)
Q Consensus 39 ~~L~V~i~~a~~L~~~d~~----------g~~dPyv~v~~~~~~-~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~ 107 (768)
|.|+|+|++|++|...|.. |.+||||++++++++ .+|+++++|.||.|||+|.|.+.+ ...|.|.||
T Consensus 4 g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~--~~~l~~~v~ 81 (132)
T cd04014 4 GTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVHN--GRNLELTVF 81 (132)
T ss_pred eEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcCC--CCEEEEEEE
Confidence 7899999999999988752 689999999999865 699999999999999999999974 578999999
Q ss_pred EcCCC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCCCccceEEEEEEEEcc
Q 004208 108 DKMIV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGSRARGELMFAIWFGT 164 (768)
Q Consensus 108 d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~i~~~~ 164 (768)
|.+.. ++++||++.++|.++..+. ......|++|++ .|+|++.+++..
T Consensus 82 d~~~~~~~~~iG~~~i~l~~l~~~~---~~~~~~w~~L~~------~G~l~l~~~~~~ 130 (132)
T cd04014 82 HDAAIGPDDFVANCTISFEDLIQRG---SGSFDLWVDLEP------QGKLHVKIELKG 130 (132)
T ss_pred eCCCCCCCceEEEEEEEhHHhcccC---CCcccEEEEccC------CcEEEEEEEEec
Confidence 99887 8999999999999987631 123589999973 399999888754
No 93
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.70 E-value=1.1e-16 Score=141.62 Aligned_cols=100 Identities=20% Similarity=0.213 Sum_probs=87.2
Q ss_pred eeEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEecCeeeeeccccCCCCCccccEEEEEEeCCCcEEEEEEEeCCCCCCC
Q 004208 360 IGVLELGILSAKELLPMKSRDGRGTTDAYCVAKYANKWVRTRTVVDSFDPKWNEQYTWEVYDPYTVITLVVFDNCHLHPG 439 (768)
Q Consensus 360 ~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~~~~~T~~~~~t~nP~wne~~~~~v~~~~~~l~v~v~d~~~~~~~ 439 (768)
+|.|.|.|++|++|... +..||||++++|+++.+|++++++ ||.|||.|.|.+.++...|.|+|||++.+
T Consensus 1 m~~L~V~Vv~Ar~L~~~------~~~dPYV~Ik~g~~k~kT~v~~~~-nP~WnE~F~F~~~~~~~~L~v~V~dkd~~--- 70 (127)
T cd08394 1 MSLLCVLVKKAKLDGAP------DKFNTYVTLKVQNVKSTTIAVRGS-QPCWEQDFMFEINRLDLGLVIELWNKGLI--- 70 (127)
T ss_pred CceEEEEEEEeeCCCCC------CCCCCeEEEEECCEEeEeeECCCC-CCceeeEEEEEEcCCCCEEEEEEEeCCCc---
Confidence 36799999999999653 346899999999999999999884 99999999999988877899999999853
Q ss_pred CCCCCceEEEEEeccccccCcee--eeeEeeeec
Q 004208 440 GAKDSRIGKVRIRLSTLETDRIY--THSYPLVAL 471 (768)
Q Consensus 440 ~~~d~~lG~~~i~l~~l~~~~~~--~~~~~L~~~ 471 (768)
.|++||++.|+|+++..+... ..||+|...
T Consensus 71 --~DD~lG~v~i~L~~v~~~~~~~~~~Wy~L~~~ 102 (127)
T cd08394 71 --WDTLVGTVWIPLSTIRQSNEEGPGEWLTLDSE 102 (127)
T ss_pred --CCCceEEEEEEhHHcccCCCCCCCccEecChH
Confidence 799999999999999876544 789999744
No 94
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.70 E-value=1e-16 Score=142.38 Aligned_cols=104 Identities=33% Similarity=0.463 Sum_probs=90.5
Q ss_pred EEEEEEEeecCCCCCC-CCCCCcEEEEEECCeeeEeeeecCCCCCee-eeEEEEEecc--CCCceEEEEEEEcCCC-CCc
Q 004208 41 LYVRIVRARDLQVNQV-TGTCDPYVEVKIGNYKGTTIPFEKKLNPEW-NQVFAFTKER--LQAISVELLVKDKMIV-NGD 115 (768)
Q Consensus 41 L~V~i~~a~~L~~~d~-~g~~dPyv~v~~~~~~~~T~~~~~t~nP~W-ne~f~f~~~~--~~~~~L~i~V~d~~~~-~d~ 115 (768)
|.|+|++|++|+..+. .|.+||||++++++++.+|++++++.||+| ||+|.|.+.. +....|.|+|||++.. +++
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~~ 80 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSAND 80 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCCC
Confidence 6899999999998884 688999999999999999999999999999 9999999864 3357899999999998 899
Q ss_pred eeEEEEEcCCCCCCCCCCCCCCCCeEEEccc
Q 004208 116 FIGKIKIDMPDIPKRVPPDSPLAPEWKRLEA 146 (768)
Q Consensus 116 ~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 146 (768)
+||++.+++.++.... +......||+|.+
T Consensus 81 ~iG~~~~~l~~l~~~~--~~~~~~~w~~l~~ 109 (110)
T cd08688 81 AIGKVYIDLNPLLLKD--SVSQISGWFPIYD 109 (110)
T ss_pred ceEEEEEeHHHhcccC--CccccCCeEEccc
Confidence 9999999999997742 1223689999875
No 95
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.70 E-value=9.2e-17 Score=146.26 Aligned_cols=114 Identities=22% Similarity=0.349 Sum_probs=96.6
Q ss_pred CCCcccccccccccccEEEEEEEEeecCCCCC-CCCCCCcEEEEEECC-----eeeEeeeecCCCCCeeeeEEEEEecc-
Q 004208 24 GRERLTSSFDLVEQMEFLYVRIVRARDLQVNQ-VTGTCDPYVEVKIGN-----YKGTTIPFEKKLNPEWNQVFAFTKER- 96 (768)
Q Consensus 24 ~~~~~~~~~~~~~~~~~L~V~i~~a~~L~~~d-~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~Wne~f~f~~~~- 96 (768)
|...+++.|+- ..+.|.|+|++|+||+..+ ..+.+||||++.+.+ .+.+|++++++.||+|||+|.|.+..
T Consensus 1 G~i~~~l~y~~--~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~ 78 (123)
T cd08521 1 GEIEFSLSYNY--KTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKS 78 (123)
T ss_pred CeEEEEEEEeC--CCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHH
Confidence 34678888974 4579999999999999988 788999999999843 46799999999999999999999753
Q ss_pred -CCCceEEEEEEEcCCC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEc
Q 004208 97 -LQAISVELLVKDKMIV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRL 144 (768)
Q Consensus 97 -~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 144 (768)
+....|.|+|||++.. ++++||++.++|.++..+. ....||+|
T Consensus 79 ~l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l~~~~-----~~~~w~~l 123 (123)
T cd08521 79 QLETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDS-----QQSEWYPL 123 (123)
T ss_pred HhCCCEEEEEEEeCCCCcCCceeeEEEEecccccccC-----CCccEEEC
Confidence 3467899999999988 8999999999999996542 24789986
No 96
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.70 E-value=1.5e-16 Score=140.22 Aligned_cols=102 Identities=27% Similarity=0.452 Sum_probs=91.9
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEeeecccCCCCCCcccceEEEEecCCCCCcEEEEEEeccCCCCCceeE
Q 004208 202 LRVNVIEAQDLVPKQRNRNPEVFIKAIFGNVVLKTTVSAKKTVNPTWNEDLMFVAAEPFDDPLILTVEDKLGDNKEECLG 281 (768)
Q Consensus 202 L~V~v~~a~~L~~~d~~~~~dpyV~v~lg~~~~~T~~i~~~t~nP~wne~f~f~~~~~~~~~L~i~V~d~d~~~~d~~lG 281 (768)
|.|+|++|++|+..+..+.+||||+++++++..+|+++++ +.||.|||.|.|.+..+..+.|.|+|+|++. +++||
T Consensus 2 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~-t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~---~~~iG 77 (105)
T cd04050 2 LFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKER-TNNPVWEEGFTFLVRNPENQELEIEVKDDKT---GKSLG 77 (105)
T ss_pred EEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccC-CCCCcccceEEEEeCCCCCCEEEEEEEECCC---CCccE
Confidence 7899999999999988899999999999999999999987 9999999999999988777889999999875 78999
Q ss_pred EEEEeccccccccCCCCCCceeEEcccC
Q 004208 282 RLVLPLSKAGKRFLPLPAAAIWYNLERN 309 (768)
Q Consensus 282 ~~~i~l~~l~~~~~~~~~~~~w~~L~~~ 309 (768)
++.++|.++... ++...++||+|.+.
T Consensus 78 ~~~i~l~~l~~~--~~~~~~~w~~L~~~ 103 (105)
T cd04050 78 SLTLPLSELLKE--PDLTLDQPFPLDNS 103 (105)
T ss_pred EEEEEHHHhhcc--ccceeeeeEecCCC
Confidence 999999998753 24467899999876
No 97
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.69 E-value=2.5e-16 Score=143.64 Aligned_cols=119 Identities=26% Similarity=0.324 Sum_probs=98.8
Q ss_pred ccEEEEEEEEeecCCCCC-CCCCCCcEEEEEECC--eeeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcCCC-C
Q 004208 38 MEFLYVRIVRARDLQVNQ-VTGTCDPYVEVKIGN--YKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIV-N 113 (768)
Q Consensus 38 ~~~L~V~i~~a~~L~~~d-~~g~~dPyv~v~~~~--~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~~-~ 113 (768)
+|.|.|+|++|++|+..+ ..+.+||||++++++ ...+|++++++.||+|||+|.|.+.. ....|.|+|||++.. +
T Consensus 1 ~g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~-~~~~l~~~v~d~~~~~~ 79 (124)
T cd04044 1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNS-LTEPLNLTVYDFNDKRK 79 (124)
T ss_pred CeEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCC-CCCEEEEEEEecCCCCC
Confidence 478999999999998655 456799999999998 78999999999999999999999884 378999999999988 9
Q ss_pred CceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCCCccceEEEEEEEEc
Q 004208 114 GDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGSRARGELMFAIWFG 163 (768)
Q Consensus 114 d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~i~~~ 163 (768)
|++||++.+++.++..+... ...|..+.. +++..|+|.+++.|.
T Consensus 80 d~~iG~~~~~l~~l~~~~~~----~~~~~~~~~--~~k~~G~i~~~l~~~ 123 (124)
T cd04044 80 DKLIGTAEFDLSSLLQNPEQ----ENLTKNLLR--NGKPVGELNYDLRFF 123 (124)
T ss_pred CceeEEEEEEHHHhccCccc----cCcchhhhc--CCccceEEEEEEEeC
Confidence 99999999999999865321 123444442 344679999999885
No 98
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.69 E-value=1.7e-16 Score=147.25 Aligned_cols=115 Identities=20% Similarity=0.305 Sum_probs=93.4
Q ss_pred EEEEEEEecCCCCCCCCCCCCCcCcEEEEEecC-----eeeeeccccCCCCCccccEEEEEEe---------------CC
Q 004208 363 LELGILSAKELLPMKSRDGRGTTDAYCVAKYAN-----KWVRTRTVVDSFDPKWNEQYTWEVY---------------DP 422 (768)
Q Consensus 363 l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~-----~~~~T~~~~~t~nP~wne~~~~~v~---------------~~ 422 (768)
|.|+|++|+||.. ..|.+||||++++++ ...||++++++.||+|||.|.|.+. +.
T Consensus 2 L~V~Vi~ArnL~~-----~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~ 76 (148)
T cd04010 2 LSVRVIECSDLAL-----KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDA 76 (148)
T ss_pred EEEEEEeCcCCCC-----CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccc
Confidence 8899999999986 347899999999976 5689999999999999999999995 11
Q ss_pred -CcEEEEEEEeCCCCCCCCCCCCceEEEEEeccccccC-ceeeeeEeeeecCCC---------CcccccEEEEEE
Q 004208 423 -YTVITLVVFDNCHLHPGGAKDSRIGKVRIRLSTLETD-RIYTHSYPLVALLPN---------GVKKMGEVQLAV 486 (768)
Q Consensus 423 -~~~l~v~v~d~~~~~~~~~~d~~lG~~~i~l~~l~~~-~~~~~~~~L~~~~~~---------g~~~~G~i~l~~ 486 (768)
...|.|.|||++.++ +|++||++.|+|..+..+ .....||+|...... +....|.++|.+
T Consensus 77 ~~~~L~i~V~d~~~~~----~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (148)
T cd04010 77 EKLELRVDLWHASMGG----GDVFLGEVRIPLRGLDLQAGSHQAWYFLQPREEKSTPPGTRSSKDNSLGSLRLKI 147 (148)
T ss_pred cEEEEEEEEEcCCCCC----CCceeEEEEEecccccccCCcCcceeecCCcccccCCCCCcccccCCcccEEEec
Confidence 247999999999754 899999999999999987 556899999754211 223457777764
No 99
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.69 E-value=1.7e-16 Score=139.83 Aligned_cols=96 Identities=21% Similarity=0.326 Sum_probs=83.4
Q ss_pred eEEEEEEEEecCCCCCCCCC-CCCCcCcEEEEEecCeeeeeccccCCCCCccccEEEEEEeCC--CcEEEEEEEeCCCCC
Q 004208 361 GVLELGILSAKELLPMKSRD-GRGTTDAYCVAKYANKWVRTRTVVDSFDPKWNEQYTWEVYDP--YTVITLVVFDNCHLH 437 (768)
Q Consensus 361 g~l~v~v~~a~~L~~~~~~~-~~g~~dpyv~v~~g~~~~~T~~~~~t~nP~wne~~~~~v~~~--~~~l~v~v~d~~~~~ 437 (768)
|.|.|+|++|+||++.+... ..+.+||||+++++++.+||++++++.||.|||.|.|.+.+. ...|.|+|||++.++
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~ 80 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFS 80 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCC
Confidence 68999999999999875311 224689999999999999999999999999999999999763 348999999999865
Q ss_pred CCCCCCCceEEEEEeccccccCc
Q 004208 438 PGGAKDSRIGKVRIRLSTLETDR 460 (768)
Q Consensus 438 ~~~~~d~~lG~~~i~l~~l~~~~ 460 (768)
+|++||++.++|++|..+.
T Consensus 81 ----~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 81 ----FNDYVATGSLSVQELLNAA 99 (108)
T ss_pred ----CCcceEEEEEEHHHHHhhC
Confidence 8999999999999998764
No 100
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.69 E-value=1.2e-16 Score=141.95 Aligned_cols=102 Identities=26% Similarity=0.428 Sum_probs=89.4
Q ss_pred EEEEEEEecCCCCCCCCCCCCCcCcEEEEEecCeeeeeccccCCCCCcc-ccEEEEEEeCC---CcEEEEEEEeCCCCCC
Q 004208 363 LELGILSAKELLPMKSRDGRGTTDAYCVAKYANKWVRTRTVVDSFDPKW-NEQYTWEVYDP---YTVITLVVFDNCHLHP 438 (768)
Q Consensus 363 l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~~~~~T~~~~~t~nP~w-ne~~~~~v~~~---~~~l~v~v~d~~~~~~ 438 (768)
|+|+|++|+||+.++ ...|.+||||+++++++.+||+++++++||.| ||.|.|.+... .+.|.|+|||++.++
T Consensus 1 l~V~v~~a~~L~~~d--~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~- 77 (110)
T cd08688 1 LKVRVVAARDLPVMD--RSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYS- 77 (110)
T ss_pred CEEEEEEEECCCccc--cCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCC-
Confidence 579999999999862 14678999999999999999999999999999 99999999863 368999999999865
Q ss_pred CCCCCCceEEEEEecccccc---CceeeeeEeeee
Q 004208 439 GGAKDSRIGKVRIRLSTLET---DRIYTHSYPLVA 470 (768)
Q Consensus 439 ~~~~d~~lG~~~i~l~~l~~---~~~~~~~~~L~~ 470 (768)
+|++||++.+++.++.. +..++.||+|.+
T Consensus 78 ---~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 78 ---ANDAIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred ---CCCceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 88999999999999987 345789999864
No 101
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.69 E-value=2.2e-16 Score=143.73 Aligned_cols=115 Identities=26% Similarity=0.365 Sum_probs=98.0
Q ss_pred CCcccccccccccccEEEEEEEEeecCCCCC-CCCCCCcEEEEEECC---eeeEeeeecCCCCCeeeeEEEEEecc--CC
Q 004208 25 RERLTSSFDLVEQMEFLYVRIVRARDLQVNQ-VTGTCDPYVEVKIGN---YKGTTIPFEKKLNPEWNQVFAFTKER--LQ 98 (768)
Q Consensus 25 ~~~~~~~~~~~~~~~~L~V~i~~a~~L~~~d-~~g~~dPyv~v~~~~---~~~~T~~~~~t~nP~Wne~f~f~~~~--~~ 98 (768)
...+++.|+-. .+.|.|+|++|+||+..+ ..+.+||||++++.+ +..+|++++++.||+|||+|.|.+.. +.
T Consensus 2 ~l~~~l~y~~~--~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~ 79 (123)
T cd08390 2 RLWFSVQYDLE--EEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQ 79 (123)
T ss_pred EEEEEEEECCC--CCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhc
Confidence 45788889864 578999999999999988 688999999999853 56789999999999999999999753 33
Q ss_pred CceEEEEEEEcCCC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEccc
Q 004208 99 AISVELLVKDKMIV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEA 146 (768)
Q Consensus 99 ~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 146 (768)
...|.|+|||++.. ++++||++.++|.++.... ....|++|++
T Consensus 80 ~~~l~i~v~d~~~~~~~~~iG~~~i~L~~l~~~~-----~~~~w~~L~~ 123 (123)
T cd08390 80 RRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDLVK-----GGVVWRDLEP 123 (123)
T ss_pred ccEEEEEEEECCcCCCCcEEEEEEEeccceecCC-----CceEEEeCCC
Confidence 56899999999988 8999999999999997753 2468999864
No 102
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.69 E-value=4.5e-16 Score=142.30 Aligned_cols=119 Identities=24% Similarity=0.409 Sum_probs=99.8
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcCCC-CCc
Q 004208 40 FLYVRIVRARDLQVNQVTGTCDPYVEVKIGN---YKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIV-NGD 115 (768)
Q Consensus 40 ~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~---~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~~-~d~ 115 (768)
.|.|+|++|++|+..+..+.+||||++.+++ ...+|++++++.||.|||+|.|.+.......|.|+|||++.. +++
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~ 81 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHD 81 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence 6899999999999999899999999999875 357999999999999999999998775567899999999988 899
Q ss_pred eeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCCCccceEEEEEEEEcccC
Q 004208 116 FIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGSRARGELMFAIWFGTQA 166 (768)
Q Consensus 116 ~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~i~~~~~~ 166 (768)
+||++.++|..+.... +......|++|.+ .|+|.+.+.+..+.
T Consensus 82 ~iG~~~i~l~~~~~~~--~~~~~~~w~~l~~------~g~i~l~~~~~~~~ 124 (126)
T cd04043 82 LCGRASLKLDPKRFGD--DGLPREIWLDLDT------QGRLLLRVSMEGER 124 (126)
T ss_pred eEEEEEEecCHHHcCC--CCCCceEEEEcCC------CCeEEEEEEEeeec
Confidence 9999999998764331 0123578999974 38888888776543
No 103
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.69 E-value=2e-16 Score=141.07 Aligned_cols=101 Identities=16% Similarity=0.294 Sum_probs=86.5
Q ss_pred EEEEEEEecCCCCCCCCCCCCCcCcEEEEEe-c----C--eeeeeccccCCCCCccccEEEEEEeCC----CcEEEEEEE
Q 004208 363 LELGILSAKELLPMKSRDGRGTTDAYCVAKY-A----N--KWVRTRTVVDSFDPKWNEQYTWEVYDP----YTVITLVVF 431 (768)
Q Consensus 363 l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~-g----~--~~~~T~~~~~t~nP~wne~~~~~v~~~----~~~l~v~v~ 431 (768)
|+|.|++|+||+.. + .|.+||||+|++ | . ++++|+++.+++||.|||+|+|.+... ...|.|.||
T Consensus 2 L~V~Vi~A~~L~~~---d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~ 77 (120)
T cd08395 2 VTVKVVAANDLKWQ---T-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVK 77 (120)
T ss_pred EEEEEEECcCCCcc---c-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEE
Confidence 89999999999874 4 489999999997 4 2 347899999999999999999999742 247999999
Q ss_pred eCCCCCCCCCCCCceEEEEEeccccccCceeeeeEeeeec
Q 004208 432 DNCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPLVAL 471 (768)
Q Consensus 432 d~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 471 (768)
|++..+ +|++||++.++|+++..++....|++|...
T Consensus 78 D~d~~~----~dd~IG~~~l~l~~~~~~~~~~~w~~L~~~ 113 (120)
T cd08395 78 DYCFAR----DDRLVGVTVLQLRDIAQAGSCACWLPLGRR 113 (120)
T ss_pred EecccC----CCCEEEEEEEEHHHCcCCCcEEEEEECcCc
Confidence 998643 789999999999999999888899999543
No 104
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.69 E-value=3.5e-16 Score=142.83 Aligned_cols=119 Identities=23% Similarity=0.392 Sum_probs=97.9
Q ss_pred EEEEEEEEecCCCCCCCCCCCCCcCcEEEEEecCeeeeeccccCCCCCccccEEEEEEeCCCcEEEEEEEeCCCCCC---
Q 004208 362 VLELGILSAKELLPMKSRDGRGTTDAYCVAKYANKWVRTRTVVDSFDPKWNEQYTWEVYDPYTVITLVVFDNCHLHP--- 438 (768)
Q Consensus 362 ~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~~~~~T~~~~~t~nP~wne~~~~~v~~~~~~l~v~v~d~~~~~~--- 438 (768)
.|+|+|++|++|+.. +..|.+||||+++++++.++|+++.++.||.|||.|.|.+.++...|.|+|||++....
T Consensus 2 ~L~V~vi~a~~L~~~---d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~~ 78 (127)
T cd04027 2 KISITVVCAQGLIAK---DKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSRL 78 (127)
T ss_pred eEEEEEEECcCCcCC---CCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCCCCEEEEEEEECCCCccccc
Confidence 589999999999985 66789999999999999999999999999999999999998777799999999985210
Q ss_pred ----CCCCCCceEEEEEeccccccCceeeeeEeeeecCCCCcccccEEEEEE
Q 004208 439 ----GGAKDSRIGKVRIRLSTLETDRIYTHSYPLVALLPNGVKKMGEVQLAV 486 (768)
Q Consensus 439 ----~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~ 486 (768)
..+.|++||.+.+++.++.... ..||+|.... ......|+|.|++
T Consensus 79 ~~~~~~~~~~~iG~~~i~l~~~~~~~--~~w~~L~~~~-~~~~~~G~i~~~~ 127 (127)
T cd04027 79 KQKFTRESDDFLGQTIIEVRTLSGEM--DVWYNLEKRT-DKSAVSGAIRLHI 127 (127)
T ss_pred ceeccccCCCcceEEEEEhHHccCCC--CeEEECccCC-CCCcEeEEEEEEC
Confidence 0136999999999999886443 6899997553 2233579888864
No 105
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.69 E-value=3.3e-16 Score=142.15 Aligned_cols=118 Identities=24% Similarity=0.331 Sum_probs=96.2
Q ss_pred EEEEEEEecCCCCCCCCCCCCCcCcEEEEEec-CeeeeeccccCCCCCccccEEEEEEeCCCcEEEEEEEeCCCCCCCCC
Q 004208 363 LELGILSAKELLPMKSRDGRGTTDAYCVAKYA-NKWVRTRTVVDSFDPKWNEQYTWEVYDPYTVITLVVFDNCHLHPGGA 441 (768)
Q Consensus 363 l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g-~~~~~T~~~~~t~nP~wne~~~~~v~~~~~~l~v~v~d~~~~~~~~~ 441 (768)
|+|+|++|+||..+ +..+.+||||++.++ .+.+||++++++.||.|||.|.|.+.. .+.|.|+|||++.++ .+
T Consensus 2 l~v~v~~A~~L~~~---~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~-~~~l~i~V~d~~~~~--~~ 75 (123)
T cd08382 2 VRLTVLCADGLAKR---DLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP-SSIITIQVFDQKKFK--KK 75 (123)
T ss_pred eEEEEEEecCCCcc---CCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC-CCEEEEEEEECCCCC--CC
Confidence 78999999999885 667899999999996 678999999999999999999999965 679999999999864 22
Q ss_pred CCCceEEEEEeccccccCce-eeeeEeeeecCCC-CcccccEEEEEE
Q 004208 442 KDSRIGKVRIRLSTLETDRI-YTHSYPLVALLPN-GVKKMGEVQLAV 486 (768)
Q Consensus 442 ~d~~lG~~~i~l~~l~~~~~-~~~~~~L~~~~~~-g~~~~G~i~l~~ 486 (768)
.|++||++.++++++..... ...||+|...... +....|+|.+.+
T Consensus 76 ~d~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 76 DQGFLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred CCceEeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence 36899999999999876543 3579999665432 233357777665
No 106
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.69 E-value=1.4e-16 Score=150.99 Aligned_cols=117 Identities=24% Similarity=0.361 Sum_probs=96.2
Q ss_pred CCcccccccccc----------cccEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeeeEeeeecCCCCCeeeeE
Q 004208 25 RERLTSSFDLVE----------QMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIG-----NYKGTTIPFEKKLNPEWNQV 89 (768)
Q Consensus 25 ~~~~~~~~~~~~----------~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~-----~~~~~T~~~~~t~nP~Wne~ 89 (768)
...+++.|+... ..+.|.|+|++|+||+..+..|.+||||++++. .++++|++++++.||+|||+
T Consensus 3 ~l~~~l~y~~~~~~~~~~~~~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~ 82 (162)
T cd04020 3 ELKVALKYVPPESEGALKSKKPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHT 82 (162)
T ss_pred eEEEEEEecCccccccccccCCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCE
Confidence 345666666532 468999999999999999988999999999984 25789999999999999999
Q ss_pred EEEEe---ccCCCceEEEEEEEcCCC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEccc
Q 004208 90 FAFTK---ERLQAISVELLVKDKMIV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEA 146 (768)
Q Consensus 90 f~f~~---~~~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 146 (768)
|.|.. .++....|.|+|||++.+ ++++||++.+++.++.... ....|+.+.+
T Consensus 83 f~f~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~~~~-----~~~~w~~~~~ 138 (162)
T cd04020 83 FVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTGKSYG-----QAVDWMDSTG 138 (162)
T ss_pred EEEecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCccccCC-----CccccccCCh
Confidence 99984 344456899999999998 8999999999999987543 2467887754
No 107
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.69 E-value=2.1e-16 Score=141.88 Aligned_cols=101 Identities=21% Similarity=0.324 Sum_probs=86.4
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEecC-----eeeeeccccCCCCCccccEEEEEEeC--CCcEEEEEEEeC
Q 004208 361 GVLELGILSAKELLPMKSRDGRGTTDAYCVAKYAN-----KWVRTRTVVDSFDPKWNEQYTWEVYD--PYTVITLVVFDN 433 (768)
Q Consensus 361 g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~-----~~~~T~~~~~t~nP~wne~~~~~v~~--~~~~l~v~v~d~ 433 (768)
+.|.|+|++|+||+++ + .|.+||||++++.+ ...||++++++.||.|||.|.|.+.. ....|.|+|||.
T Consensus 12 ~~L~V~Vi~ar~L~~~---~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~ 87 (119)
T cd08685 12 RKLTLHVLEAKGLRST---N-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNK 87 (119)
T ss_pred CEEEEEEEEEECCCCC---C-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECC
Confidence 4699999999999985 5 67899999999964 35799999999999999999999875 235799999999
Q ss_pred CCCCCCCCCCCceEEEEEeccccccCceeeeeEee
Q 004208 434 CHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPL 468 (768)
Q Consensus 434 ~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 468 (768)
+..+ .++++||.+.|+|.++..+..+..||+|
T Consensus 88 ~~~~---~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 88 LSKS---RDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred CCCc---CCCEEEEEEEecHHHhccCccccceEeC
Confidence 8742 2478999999999999888778999976
No 108
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.68 E-value=5.3e-16 Score=142.85 Aligned_cols=118 Identities=22% Similarity=0.331 Sum_probs=99.2
Q ss_pred eeEEEEEEEEecCCCCCCCC-------CCCCCcCcEEEEEecCee-eeeccccCCCCCccccEEEEEEeCCCcEEEEEEE
Q 004208 360 IGVLELGILSAKELLPMKSR-------DGRGTTDAYCVAKYANKW-VRTRTVVDSFDPKWNEQYTWEVYDPYTVITLVVF 431 (768)
Q Consensus 360 ~g~l~v~v~~a~~L~~~~~~-------~~~g~~dpyv~v~~g~~~-~~T~~~~~t~nP~wne~~~~~v~~~~~~l~v~v~ 431 (768)
.|.|+|+|++|+||...+.. ...|.+||||++.++++. .+|++++++.||.|||+|.|.+. ....|.|.||
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~-~~~~l~~~v~ 81 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVH-NGRNLELTVF 81 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcC-CCCEEEEEEE
Confidence 47899999999999885320 013689999999998865 69999999999999999999997 4568999999
Q ss_pred eCCCCCCCCCCCCceEEEEEecccccc--CceeeeeEeeeecCCCCcccccEEEEEEEEEe
Q 004208 432 DNCHLHPGGAKDSRIGKVRIRLSTLET--DRIYTHSYPLVALLPNGVKKMGEVQLAVRFTC 490 (768)
Q Consensus 432 d~~~~~~~~~~d~~lG~~~i~l~~l~~--~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~~ 490 (768)
|++.++ +|++||++.++|+++.. +.....|++|. ..|+|++++++.+
T Consensus 82 d~~~~~----~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~--------~~G~l~l~~~~~~ 130 (132)
T cd04014 82 HDAAIG----PDDFVANCTISFEDLIQRGSGSFDLWVDLE--------PQGKLHVKIELKG 130 (132)
T ss_pred eCCCCC----CCceEEEEEEEhHHhcccCCCcccEEEEcc--------CCcEEEEEEEEec
Confidence 998755 78999999999999987 45668999994 3499999999864
No 109
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.68 E-value=6.4e-16 Score=141.85 Aligned_cols=122 Identities=22% Similarity=0.384 Sum_probs=101.2
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEecCee-eeeccccCCCCCccccEEEEEEeCCCcEEEEEEEeCCCCCCC
Q 004208 361 GVLELGILSAKELLPMKSRDGRGTTDAYCVAKYANKW-VRTRTVVDSFDPKWNEQYTWEVYDPYTVITLVVFDNCHLHPG 439 (768)
Q Consensus 361 g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~~~-~~T~~~~~t~nP~wne~~~~~v~~~~~~l~v~v~d~~~~~~~ 439 (768)
-.|.|.|++|+||+++ .+|||.+.++++. .||+++.++.||.|+|.|.|....+...+.|.|++.+.....
T Consensus 11 ~sL~v~V~EAk~Lp~~--------~~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~~~ 82 (146)
T cd04013 11 NSLKLWIIEAKGLPPK--------KRYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPPVSVITVNLYRESDKKKK 82 (146)
T ss_pred EEEEEEEEEccCCCCc--------CCceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCcccEEEEEEEEccCcccc
Confidence 3599999999999874 3799999999987 699999999999999999998777777899999876542101
Q ss_pred CCCCCceEEEEEeccccccCceeeeeEeeeecCCCC-------cccccEEEEEEEEEe
Q 004208 440 GAKDSRIGKVRIRLSTLETDRIYTHSYPLVALLPNG-------VKKMGEVQLAVRFTC 490 (768)
Q Consensus 440 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g-------~~~~G~i~l~~~~~~ 490 (768)
..++++||++.||+.++.++.....||||.....+. .+..++|+++++|..
T Consensus 83 ~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~ 140 (146)
T cd04013 83 KDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQS 140 (146)
T ss_pred ccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEE
Confidence 126899999999999999998899999999876543 234579999999964
No 110
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.67 E-value=7.7e-16 Score=140.29 Aligned_cols=103 Identities=25% Similarity=0.353 Sum_probs=89.2
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeEEeeecccCCCCCCcccceEEEEecCC--CCCcEEEEEEeccCC
Q 004208 200 WYLRVNVIEAQDLVPKQRNRNPEVFIKAIFG---NVVLKTTVSAKKTVNPTWNEDLMFVAAEP--FDDPLILTVEDKLGD 274 (768)
Q Consensus 200 ~~L~V~v~~a~~L~~~d~~~~~dpyV~v~lg---~~~~~T~~i~~~t~nP~wne~f~f~~~~~--~~~~L~i~V~d~d~~ 274 (768)
+.|.|+|++|+||+..+..+.+||||++.+. ++.++|+++++ +.||+|||+|.|.+... ....|.|+|||++..
T Consensus 16 ~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~-t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d~~ 94 (124)
T cd08385 16 NQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRK-TLNPVFNETFTFKVPYSELGNKTLVFSVYDFDRF 94 (124)
T ss_pred CEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcC-CCCCceeeeEEEeCCHHHhCCCEEEEEEEeCCCC
Confidence 4699999999999999988999999999984 35779999987 99999999999998643 345799999999998
Q ss_pred CCCceeEEEEEeccccccccCCCCCCceeEEcc
Q 004208 275 NKEECLGRLVLPLSKAGKRFLPLPAAAIWYNLE 307 (768)
Q Consensus 275 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~ 307 (768)
+++++||++.++++++.. +....+|++|.
T Consensus 95 ~~~~~lG~~~i~l~~~~~----~~~~~~W~~l~ 123 (124)
T cd08385 95 SKHDLIGEVRVPLLTVDL----GHVTEEWRDLE 123 (124)
T ss_pred CCCceeEEEEEecCcccC----CCCcceEEEcc
Confidence 899999999999999863 34578999885
No 111
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.67 E-value=9.3e-17 Score=147.23 Aligned_cols=100 Identities=26% Similarity=0.292 Sum_probs=87.5
Q ss_pred CCcccccccccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeEeeeecCCCCCeeeeEEEEEec--cC
Q 004208 25 RERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGN-----YKGTTIPFEKKLNPEWNQVFAFTKE--RL 97 (768)
Q Consensus 25 ~~~~~~~~~~~~~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~Wne~f~f~~~--~~ 97 (768)
...+++.|+.. ...|.|+|++|+||+..|..|.+||||++++.+ .+.+|++++++.||+|||+|.|.+. ++
T Consensus 3 ~i~~sL~Y~~~--~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l 80 (136)
T cd08406 3 EILLSLSYLPT--AERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVL 80 (136)
T ss_pred EEEEEEEEcCC--CCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHh
Confidence 46788899854 468999999999999999899999999999953 2568999999999999999999975 46
Q ss_pred CCceEEEEEEEcCCC-CCceeEEEEEcCCC
Q 004208 98 QAISVELLVKDKMIV-NGDFIGKIKIDMPD 126 (768)
Q Consensus 98 ~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~ 126 (768)
....|.|+|||+|.. ++++||++.+....
T Consensus 81 ~~~~l~~~V~~~d~~~~~~~iG~v~lg~~~ 110 (136)
T cd08406 81 QDLSLRVTVAESTEDGKTPNVGHVIIGPAA 110 (136)
T ss_pred CCcEEEEEEEeCCCCCCCCeeEEEEECCCC
Confidence 678999999999988 99999999997653
No 112
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.67 E-value=7.7e-16 Score=140.59 Aligned_cols=102 Identities=27% Similarity=0.420 Sum_probs=86.7
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEeeecccCCCCCCcccceEEEEecCC---CCCcEEEEEEec
Q 004208 200 WYLRVNVIEAQDLVPKQRNRNPEVFIKAIFGN-----VVLKTTVSAKKTVNPTWNEDLMFVAAEP---FDDPLILTVEDK 271 (768)
Q Consensus 200 ~~L~V~v~~a~~L~~~d~~~~~dpyV~v~lg~-----~~~~T~~i~~~t~nP~wne~f~f~~~~~---~~~~L~i~V~d~ 271 (768)
+.|.|+|++|++|+..+..+.+||||++++.+ ++.+|+++++ +.||.|||+|.|.+... ....|.|+|||+
T Consensus 16 ~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d~ 94 (125)
T cd04031 16 SQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKK-TLNPEWNQTFEYSNVRRETLKERTLEVTVWDY 94 (125)
T ss_pred CEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCC-CCCCccccEEEEcccCHHHhCCCEEEEEEEeC
Confidence 46999999999999999889999999999953 5779999987 99999999999986432 356899999999
Q ss_pred cCCCCCceeEEEEEeccccccccCCCCCCceeEEcc
Q 004208 272 LGDNKEECLGRLVLPLSKAGKRFLPLPAAAIWYNLE 307 (768)
Q Consensus 272 d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~ 307 (768)
+..+++++||++.++|++... ....+||+|+
T Consensus 95 ~~~~~~~~iG~~~i~l~~~~~-----~~~~~W~~L~ 125 (125)
T cd04031 95 DRDGENDFLGEVVIDLADALL-----DDEPHWYPLQ 125 (125)
T ss_pred CCCCCCcEeeEEEEecccccc-----cCCcceEECc
Confidence 988899999999999998331 2246899985
No 113
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.67 E-value=3.1e-16 Score=141.30 Aligned_cols=93 Identities=23% Similarity=0.255 Sum_probs=83.0
Q ss_pred cccEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeeecCCCCCeeeeEEEEEecc-CCCceEEEEEEEcCCC-CC
Q 004208 37 QMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGNYKGTTIPFEKKLNPEWNQVFAFTKER-LQAISVELLVKDKMIV-NG 114 (768)
Q Consensus 37 ~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~Wne~f~f~~~~-~~~~~L~i~V~d~~~~-~d 114 (768)
.++.|.|+|++|++|+. +..+.+||||+|++++++.+|++++++.||+|||+|.|.... .....|.|+|||++.. +|
T Consensus 26 ~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s~d 104 (127)
T cd04032 26 GLATLTVTVLRATGLWG-DYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGWDD 104 (127)
T ss_pred CcEEEEEEEEECCCCCc-CcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCCCCC
Confidence 57899999999999974 667889999999999999999999999999999999997433 3468999999999998 99
Q ss_pred ceeEEEEEcCCCCCCC
Q 004208 115 DFIGKIKIDMPDIPKR 130 (768)
Q Consensus 115 ~~lG~~~i~l~~l~~~ 130 (768)
++||++.++|.....+
T Consensus 105 d~IG~~~i~l~~~~~~ 120 (127)
T cd04032 105 DLLGTCSVVPEAGVHE 120 (127)
T ss_pred CeeEEEEEEecCCcee
Confidence 9999999999977643
No 114
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.67 E-value=8.8e-16 Score=140.61 Aligned_cols=103 Identities=21% Similarity=0.348 Sum_probs=88.5
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEEeeecccCCCCCCcccceEEEEecCC--CCCcEEEEEEecc
Q 004208 200 WYLRVNVIEAQDLVPKQRNRNPEVFIKAIFG-----NVVLKTTVSAKKTVNPTWNEDLMFVAAEP--FDDPLILTVEDKL 272 (768)
Q Consensus 200 ~~L~V~v~~a~~L~~~d~~~~~dpyV~v~lg-----~~~~~T~~i~~~t~nP~wne~f~f~~~~~--~~~~L~i~V~d~d 272 (768)
+.|+|+|++|+||+..+..+.+||||++.+. ...++|+++++ +.||+|||+|.|.+... ....|.|.|||++
T Consensus 16 ~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~-~~nP~wne~f~f~i~~~~l~~~~l~i~v~~~~ 94 (127)
T cd04030 16 QKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKD-NLNPVFDETFEFPVSLEELKRRTLDVAVKNSK 94 (127)
T ss_pred CEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccC-CCCCEECeEEEEecCHHHhcCCEEEEEEEECC
Confidence 4699999999999999988999999999994 46789999987 99999999999998543 4568999999988
Q ss_pred CC--CCCceeEEEEEeccccccccCCCCCCceeEEcc
Q 004208 273 GD--NKEECLGRLVLPLSKAGKRFLPLPAAAIWYNLE 307 (768)
Q Consensus 273 ~~--~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~ 307 (768)
.. +++++||++.+++.++.. .....+||+|+
T Consensus 95 ~~~~~~~~~iG~~~i~l~~l~~----~~~~~~W~~L~ 127 (127)
T cd04030 95 SFLSREKKLLGQVLIDLSDLDL----SKGFTQWYDLT 127 (127)
T ss_pred cccCCCCceEEEEEEecccccc----cCCccceEECc
Confidence 75 689999999999999863 24578899874
No 115
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.67 E-value=5e-16 Score=138.33 Aligned_cols=106 Identities=25% Similarity=0.302 Sum_probs=92.2
Q ss_pred CCeeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEeeecccCCCCCCcccceEEEEecCCC----CCcEEEEEEecc
Q 004208 197 PKLWYLRVNVIEAQDLVPKQRNRNPEVFIKAIFGNVVLKTTVSAKKTVNPTWNEDLMFVAAEPF----DDPLILTVEDKL 272 (768)
Q Consensus 197 p~~~~L~V~v~~a~~L~~~d~~~~~dpyV~v~lg~~~~~T~~i~~~t~nP~wne~f~f~~~~~~----~~~L~i~V~d~d 272 (768)
|+.+.|+|+|++|++|+ .+.+||||++++++++.+|+++++ +.||.|||+|.|.+..+. +..|.|+|||++
T Consensus 1 ~~~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~~kT~~~~~-t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~ 75 (111)
T cd04011 1 PQDFQVRVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKKG-TNCPFYNEYFFFNFHESPDELFDKIIKISVYDSR 75 (111)
T ss_pred CCcEEEEEEEEEcccCC----CCCCCCEEEEEECCEeeeeeEEec-cCCCccccEEEEecCCCHHHHhcCeEEEEEEcCc
Confidence 45678999999999998 578999999999999999999887 999999999999976542 467999999999
Q ss_pred CCCCCceeEEEEEeccccccccCCCCCCceeEEccc
Q 004208 273 GDNKEECLGRLVLPLSKAGKRFLPLPAAAIWYNLER 308 (768)
Q Consensus 273 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~ 308 (768)
..+++++||++.++|+++... ..+....+|++|.+
T Consensus 76 ~~~~~~~iG~~~i~l~~v~~~-~~~~~~~~w~~L~~ 110 (111)
T cd04011 76 SLRSDTLIGSFKLDVGTVYDQ-PDHAFLRKWLLLTD 110 (111)
T ss_pred ccccCCccEEEEECCccccCC-CCCcceEEEEEeeC
Confidence 888899999999999999754 34567889999875
No 116
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.67 E-value=8.9e-16 Score=139.99 Aligned_cols=106 Identities=24% Similarity=0.261 Sum_probs=87.5
Q ss_pred eEEEEEEEEeecCCCCCCC-CCCCcEEEEEEC---CeEEeeecccCCCCCCcccceEEEE-ecC--CCCCcEEEEEEecc
Q 004208 200 WYLRVNVIEAQDLVPKQRN-RNPEVFIKAIFG---NVVLKTTVSAKKTVNPTWNEDLMFV-AAE--PFDDPLILTVEDKL 272 (768)
Q Consensus 200 ~~L~V~v~~a~~L~~~d~~-~~~dpyV~v~lg---~~~~~T~~i~~~t~nP~wne~f~f~-~~~--~~~~~L~i~V~d~d 272 (768)
..|+|+|++|+||+..+.. +.+||||++.+. +++.||+++++ +.||.|||+|.|. +.. .....|.++|||+|
T Consensus 16 ~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~-t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d 94 (128)
T cd08388 16 KALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRK-TRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFD 94 (128)
T ss_pred CEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcC-CCCCceeeEEEEcccCHHHhCCCEEEEEEEEcC
Confidence 3699999999999998876 889999999994 45779999987 9999999999994 332 23457999999999
Q ss_pred CCCCCceeEEEEEeccccccccCCCCCCceeEEccc
Q 004208 273 GDNKEECLGRLVLPLSKAGKRFLPLPAAAIWYNLER 308 (768)
Q Consensus 273 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~ 308 (768)
..+++++||++.++|+++... .......|.+|++
T Consensus 95 ~~~~d~~lG~~~i~L~~l~~~--~~~~~~~~~~~~~ 128 (128)
T cd08388 95 RYSRDDVIGEVVCPLAGADLL--NEGELLVSREIQP 128 (128)
T ss_pred CCCCCceeEEEEEeccccCCC--CCceEEEEEeccC
Confidence 999999999999999998642 2344778888763
No 117
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.67 E-value=7.9e-16 Score=140.87 Aligned_cols=89 Identities=27% Similarity=0.294 Sum_probs=76.3
Q ss_pred eEEEEEEEEeecCCCCCC--CCCCCcEEEEEECC-----eEEeeecccCCCCCCcccceEEEEecCC--CCCcEEEEEEe
Q 004208 200 WYLRVNVIEAQDLVPKQR--NRNPEVFIKAIFGN-----VVLKTTVSAKKTVNPTWNEDLMFVAAEP--FDDPLILTVED 270 (768)
Q Consensus 200 ~~L~V~v~~a~~L~~~d~--~~~~dpyV~v~lg~-----~~~~T~~i~~~t~nP~wne~f~f~~~~~--~~~~L~i~V~d 270 (768)
+.|.|.|++|+||..+|. .+.+||||++++.. .+.||++.++ +.||+|||+|.|.+... .+..|.|+|||
T Consensus 15 ~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~-t~nPvfNE~f~F~v~~~~L~~~~L~~~V~d 93 (138)
T cd08407 15 NRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKH-KINPVWNEMIMFELPSELLAASSVELEVLN 93 (138)
T ss_pred CeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeC-CCCCccccEEEEECCHHHhCccEEEEEEEe
Confidence 469999999999999883 35589999999943 2568888887 99999999999998654 35679999999
Q ss_pred ccCCCCCceeEEEEEeccc
Q 004208 271 KLGDNKEECLGRLVLPLSK 289 (768)
Q Consensus 271 ~d~~~~d~~lG~~~i~l~~ 289 (768)
+|..+++++||++.+++..
T Consensus 94 ~d~~~~~d~iG~v~lg~~~ 112 (138)
T cd08407 94 QDSPGQSLPLGRCSLGLHT 112 (138)
T ss_pred CCCCcCcceeceEEecCcC
Confidence 9999999999999999865
No 118
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.67 E-value=1.2e-15 Score=140.84 Aligned_cols=120 Identities=27% Similarity=0.424 Sum_probs=98.1
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEeeecccCCCCCCcccceEEEEecCC---------CCCcEEEEEEec
Q 004208 201 YLRVNVIEAQDLVPKQRNRNPEVFIKAIFGNVVLKTTVSAKKTVNPTWNEDLMFVAAEP---------FDDPLILTVEDK 271 (768)
Q Consensus 201 ~L~V~v~~a~~L~~~d~~~~~dpyV~v~lg~~~~~T~~i~~~t~nP~wne~f~f~~~~~---------~~~~L~i~V~d~ 271 (768)
+|+|.|++|++|+.+|..+.+||||++.++++..+|+++++ +.||.|||.|.|.+... ....+.|+|||+
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~-t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~ 80 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKE-TLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQ 80 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcC-CCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeC
Confidence 59999999999999999999999999999999999999987 99999999999975321 124689999999
Q ss_pred cCCCCCceeEEEEE-eccccccccCCCCCCceeEEcccCccCccccccccccceEEEEEec
Q 004208 272 LGDNKEECLGRLVL-PLSKAGKRFLPLPAAAIWYNLERNIANGEEKKDVRFASRICLRFSL 331 (768)
Q Consensus 272 d~~~~d~~lG~~~i-~l~~l~~~~~~~~~~~~w~~L~~~~~~g~~~~~~~~~g~i~l~v~~ 331 (768)
|..+++++||++.+ ++..+... ..+....+|++|...+ ...|+|++.+.+
T Consensus 81 d~~~~d~~iG~~~i~~~~~~~~~-~~~~~~~~W~~L~~~~---------~~~Geil~~~~~ 131 (135)
T cd04017 81 DSVGKDEFLGRSVAKPLVKLDLE-EDFPPKLQWFPIYKGG---------QSAGELLAAFEL 131 (135)
T ss_pred cCCCCCccceEEEeeeeeecccC-CCCCCCceEEEeecCC---------CchhheeEEeEE
Confidence 99889999999987 44443321 2356788999998542 357889888764
No 119
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.66 E-value=5.9e-16 Score=143.86 Aligned_cols=108 Identities=28% Similarity=0.394 Sum_probs=90.5
Q ss_pred EEEEEEEeecCCCCCCC--------------CCCCcEEEEEECCeeeEeeeecCCCCCeeeeEEEEEecc-CCCceEEEE
Q 004208 41 LYVRIVRARDLQVNQVT--------------GTCDPYVEVKIGNYKGTTIPFEKKLNPEWNQVFAFTKER-LQAISVELL 105 (768)
Q Consensus 41 L~V~i~~a~~L~~~d~~--------------g~~dPyv~v~~~~~~~~T~~~~~t~nP~Wne~f~f~~~~-~~~~~L~i~ 105 (768)
|.|+|++|++|+.+|.. +.+||||+|.+++++.+|++++++.||+|||+|.|.+.. .....|.|+
T Consensus 2 ~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~~ 81 (151)
T cd04018 2 FIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKIQ 81 (151)
T ss_pred eEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEEE
Confidence 78999999999998854 379999999999999999999999999999999999643 235799999
Q ss_pred EEEcCCC-CCceeEEEEEcCCCCCCCCCCC--CCCCCeEEEcccCC
Q 004208 106 VKDKMIV-NGDFIGKIKIDMPDIPKRVPPD--SPLAPEWKRLEAKD 148 (768)
Q Consensus 106 V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~--~~~~~~w~~L~~~~ 148 (768)
|||+|.. +|++||++.+++.++....... -...+.|+.|....
T Consensus 82 v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~~ 127 (151)
T cd04018 82 IRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGSP 127 (151)
T ss_pred EEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeecCc
Confidence 9999998 9999999999999886543110 12457899987654
No 120
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.66 E-value=3.6e-16 Score=139.13 Aligned_cols=99 Identities=28% Similarity=0.418 Sum_probs=85.7
Q ss_pred eEEEEEEEEecCCCCCCCCCCC-CCcCcEEEEEec---CeeeeeccccCCCCCccccEEEEEEeCC----CcEEEEEEEe
Q 004208 361 GVLELGILSAKELLPMKSRDGR-GTTDAYCVAKYA---NKWVRTRTVVDSFDPKWNEQYTWEVYDP----YTVITLVVFD 432 (768)
Q Consensus 361 g~l~v~v~~a~~L~~~~~~~~~-g~~dpyv~v~~g---~~~~~T~~~~~t~nP~wne~~~~~v~~~----~~~l~v~v~d 432 (768)
|.|+|+|++|+||+.+ +.. |.+||||++++. ...++|++++++.||.|||.|.|.+..+ ...|.++|||
T Consensus 1 G~L~V~v~~a~~L~~~---d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d 77 (111)
T cd04041 1 GVLVVTIHRATDLPKA---DFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWD 77 (111)
T ss_pred CEEEEEEEEeeCCCcc---cCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEe
Confidence 6899999999999985 566 899999999984 3568999999999999999999988643 4689999999
Q ss_pred CCCCCCCCCCCCceEEEEEeccccccCceeeeeEeee
Q 004208 433 NCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPLV 469 (768)
Q Consensus 433 ~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 469 (768)
++.++ +|++||++.++++++.+.. .|+++.
T Consensus 78 ~d~~~----~dd~lG~~~i~l~~l~~~~---~~~~~~ 107 (111)
T cd04041 78 SDRFT----ADDRLGRVEIDLKELIEDR---NWMGRR 107 (111)
T ss_pred CCCCC----CCCcceEEEEEHHHHhcCC---CCCccc
Confidence 99865 8999999999999998553 788774
No 121
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.66 E-value=1.6e-15 Score=138.44 Aligned_cols=104 Identities=26% Similarity=0.414 Sum_probs=89.1
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEE---CCeEEeeecccCCCCCCcccceEEEEecC---CCCCcEEEEEEeccC
Q 004208 200 WYLRVNVIEAQDLVPKQRNRNPEVFIKAIF---GNVVLKTTVSAKKTVNPTWNEDLMFVAAE---PFDDPLILTVEDKLG 273 (768)
Q Consensus 200 ~~L~V~v~~a~~L~~~d~~~~~dpyV~v~l---g~~~~~T~~i~~~t~nP~wne~f~f~~~~---~~~~~L~i~V~d~d~ 273 (768)
+.|.|+|++|+||+..+..+.+||||++.+ +++..+|+++++ +.||.|||+|.|.+.. .....|.++|||++.
T Consensus 16 ~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~-t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d~ 94 (125)
T cd08386 16 STLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRK-NLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYDR 94 (125)
T ss_pred CEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecC-CCCCccceeEEEcccCHHHhCCCEEEEEEEeCCC
Confidence 369999999999999998899999999999 356789999987 9999999999997432 234579999999999
Q ss_pred CCCCceeEEEEEeccccccccCCCCCCceeEEccc
Q 004208 274 DNKEECLGRLVLPLSKAGKRFLPLPAAAIWYNLER 308 (768)
Q Consensus 274 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~ 308 (768)
.+++++||++.++++++.. ......|++|++
T Consensus 95 ~~~~~~iG~~~i~l~~l~~----~~~~~~W~~l~~ 125 (125)
T cd08386 95 FSRNDPIGEVSLPLNKVDL----TEEQTFWKDLKP 125 (125)
T ss_pred CcCCcEeeEEEEecccccC----CCCcceEEecCC
Confidence 8899999999999999873 345789999864
No 122
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.66 E-value=7.8e-16 Score=140.13 Aligned_cols=104 Identities=20% Similarity=0.336 Sum_probs=88.9
Q ss_pred CeeeEEEEEEEEecCCCCCCCCC-CCCCcCcEEEEEecC-----eeeeeccccCCCCCccccEEEEEEeCC---CcEEEE
Q 004208 358 PVIGVLELGILSAKELLPMKSRD-GRGTTDAYCVAKYAN-----KWVRTRTVVDSFDPKWNEQYTWEVYDP---YTVITL 428 (768)
Q Consensus 358 ~~~g~l~v~v~~a~~L~~~~~~~-~~g~~dpyv~v~~g~-----~~~~T~~~~~t~nP~wne~~~~~v~~~---~~~l~v 428 (768)
+..|.|.|+|++|+||+.+ + ..+.+||||++++.+ ...+|++++++.||.|||.|.|.+... ...|.|
T Consensus 11 ~~~~~L~V~v~~a~~L~~~---~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i 87 (123)
T cd08521 11 YKTGSLEVHIKECRNLAYA---DEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQL 87 (123)
T ss_pred CCCCEEEEEEEEecCCCCc---CCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEE
Confidence 3456799999999999985 4 567899999998832 458999999999999999999998752 458999
Q ss_pred EEEeCCCCCCCCCCCCceEEEEEeccccccCceeeeeEee
Q 004208 429 VVFDNCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPL 468 (768)
Q Consensus 429 ~v~d~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 468 (768)
+|||++.++ ++++||++.++|+++..+...+.||+|
T Consensus 88 ~v~d~~~~~----~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 88 SVWHHDRFG----RNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred EEEeCCCCc----CCceeeEEEEecccccccCCCccEEEC
Confidence 999999865 889999999999999777677899986
No 123
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.66 E-value=1.3e-15 Score=139.26 Aligned_cols=114 Identities=21% Similarity=0.383 Sum_probs=98.5
Q ss_pred EEEecCCCCCCCCCCCCCcCcEEEEEecCeeeeeccccCCCCCccccEEEEEEeCC---CcEEEEEEEeCCCCCCCCCCC
Q 004208 367 ILSAKELLPMKSRDGRGTTDAYCVAKYANKWVRTRTVVDSFDPKWNEQYTWEVYDP---YTVITLVVFDNCHLHPGGAKD 443 (768)
Q Consensus 367 v~~a~~L~~~~~~~~~g~~dpyv~v~~g~~~~~T~~~~~t~nP~wne~~~~~v~~~---~~~l~v~v~d~~~~~~~~~~d 443 (768)
|++|+||+. ..|++||||++++++..++|++++++.||+|||.|.|.+.++ ...|.|+|||++..+ +|
T Consensus 2 vi~a~~L~~-----~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~----~d 72 (127)
T cd08373 2 VVSLKNLPG-----LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVG----RN 72 (127)
T ss_pred eEEeeCCcc-----cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCC----CC
Confidence 689999976 457899999999999999999999999999999999999754 569999999999865 78
Q ss_pred CceEEEEEeccccccCceeeeeEeeeecCCCCcccccEEEEEEEEEec
Q 004208 444 SRIGKVRIRLSTLETDRIYTHSYPLVALLPNGVKKMGEVQLAVRFTCS 491 (768)
Q Consensus 444 ~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~~~ 491 (768)
++||++.++|+++..+.....|++|.... +....|+|+++++|.+.
T Consensus 73 ~~iG~~~~~l~~l~~~~~~~~~~~L~~~~--~~~~~~~l~l~~~~~~~ 118 (127)
T cd08373 73 RLIGSATVSLQDLVSEGLLEVTEPLLDSN--GRPTGATISLEVSYQPP 118 (127)
T ss_pred ceEEEEEEEhhHcccCCceEEEEeCcCCC--CCcccEEEEEEEEEeCC
Confidence 99999999999999888888999997553 33335899999998643
No 124
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.66 E-value=5.2e-16 Score=144.42 Aligned_cols=100 Identities=29% Similarity=0.465 Sum_probs=88.6
Q ss_pred ccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-----------------------------eeEeeeecCCCCCee
Q 004208 36 EQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGNY-----------------------------KGTTIPFEKKLNPEW 86 (768)
Q Consensus 36 ~~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~~-----------------------------~~~T~~~~~t~nP~W 86 (768)
.+.+.|.|+|++|+||.+.|..|.+||||++++++. .++|+++++|.||+|
T Consensus 25 ~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W 104 (153)
T cd08676 25 PPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVW 104 (153)
T ss_pred CCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCcc
Confidence 467899999999999999999999999999999641 368999999999999
Q ss_pred eeEEEEEeccCCCceEEEEEEEcCCCCCceeEEEEEcCCCCCCCCCCCCCCCCeEEEc
Q 004208 87 NQVFAFTKERLQAISVELLVKDKMIVNGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRL 144 (768)
Q Consensus 87 ne~f~f~~~~~~~~~L~i~V~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 144 (768)
||+|.|.+.++....|.|+|||++ +++||++.+++.++... ....||+|
T Consensus 105 nE~F~f~v~~~~~~~L~i~V~D~d---d~~IG~v~i~l~~l~~~------~~d~W~~L 153 (153)
T cd08676 105 NETFRFEVEDVSNDQLHLDIWDHD---DDFLGCVNIPLKDLPSC------GLDSWFKL 153 (153)
T ss_pred ccEEEEEeccCCCCEEEEEEEecC---CCeEEEEEEEHHHhCCC------CCCCeEeC
Confidence 999999998776789999999998 89999999999999732 25899986
No 125
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.66 E-value=2.5e-16 Score=145.42 Aligned_cols=114 Identities=25% Similarity=0.375 Sum_probs=94.9
Q ss_pred cccccccccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeEeeeecCCCCCeeeeEEEEEecc--CCC
Q 004208 27 RLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGN-----YKGTTIPFEKKLNPEWNQVFAFTKER--LQA 99 (768)
Q Consensus 27 ~~~~~~~~~~~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~Wne~f~f~~~~--~~~ 99 (768)
.+++.|+- ..+.|.|+|++|+||+..|..|.+||||++.+.+ .+.+|++++++.||+|||+|.|.+.. +..
T Consensus 3 ~~~l~y~~--~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~ 80 (133)
T cd08384 3 LVSLMYNT--QRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAK 80 (133)
T ss_pred EEEEEEcC--CCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCC
Confidence 46777885 4689999999999999999889999999999964 36799999999999999999999753 345
Q ss_pred ceEEEEEEEcCCC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCC
Q 004208 100 ISVELLVKDKMIV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDG 149 (768)
Q Consensus 100 ~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 149 (768)
..|.|+|||++.. ++++||++.+++.... ....+|+++...++
T Consensus 81 ~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~-------~~~~~W~~~l~~~~ 124 (133)
T cd08384 81 KTLEITVWDKDIGKSNDYIGGLQLGINAKG-------ERLRHWLDCLKNPD 124 (133)
T ss_pred CEEEEEEEeCCCCCCccEEEEEEEecCCCC-------chHHHHHHHHhCCC
Confidence 7899999999988 8999999999997521 12467888765443
No 126
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.66 E-value=7.5e-16 Score=138.68 Aligned_cols=106 Identities=21% Similarity=0.347 Sum_probs=89.6
Q ss_pred CCeeEEEEEEEEeecCCCCCCCCCCCcEEEEEE---C---CeEEeeecccCCCCCCcccceEEEEecCC--CCCcEEEEE
Q 004208 197 PKLWYLRVNVIEAQDLVPKQRNRNPEVFIKAIF---G---NVVLKTTVSAKKTVNPTWNEDLMFVAAEP--FDDPLILTV 268 (768)
Q Consensus 197 p~~~~L~V~v~~a~~L~~~d~~~~~dpyV~v~l---g---~~~~~T~~i~~~t~nP~wne~f~f~~~~~--~~~~L~i~V 268 (768)
+..+.|.|+|++|+||+.++..+.+||||++++ . ..+.+|++.++ +.||+|||+|.|.+... ....|.|+|
T Consensus 11 ~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~-t~nPvfnE~F~f~v~~~~L~~~~L~~~V 89 (124)
T cd08680 11 SGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALED-QDKPVFNEVFRVPISSTKLYQKTLQVDV 89 (124)
T ss_pred CCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCC-CCCCccccEEEEECCHHHhhcCEEEEEE
Confidence 344579999999999999988889999999998 2 24789998887 99999999999998644 456899999
Q ss_pred EeccCCCCCceeEEEEEeccccccccCCCCCCceeEEc
Q 004208 269 EDKLGDNKEECLGRLVLPLSKAGKRFLPLPAAAIWYNL 306 (768)
Q Consensus 269 ~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L 306 (768)
||++..+++++||++.|+|+++.. ......+||+|
T Consensus 90 ~~~~~~~~~~~lG~~~i~L~~~~~---~~~~~~~Wy~l 124 (124)
T cd08680 90 CSVGPDQQEECLGGAQISLADFES---SEEMSTKWYNL 124 (124)
T ss_pred EeCCCCCceeEEEEEEEEhhhccC---CCccccccccC
Confidence 999988899999999999999853 22346789875
No 127
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.65 E-value=7.7e-16 Score=142.54 Aligned_cols=91 Identities=32% Similarity=0.522 Sum_probs=85.0
Q ss_pred ccEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcCCC-CCce
Q 004208 38 MEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGNYKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIV-NGDF 116 (768)
Q Consensus 38 ~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~~-~d~~ 116 (768)
.|.|+|+|++|+||+..|. +.+||||++++++++.+|++++++.||+|||+|.|.+.+. ...|.|+|||++.+ +|++
T Consensus 1 ~G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~-~~~l~~~V~D~d~~~~dd~ 78 (145)
T cd04038 1 LGLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNP-MAPLKLEVFDKDTFSKDDS 78 (145)
T ss_pred CeEEEEEEEeeECCCCCCC-CCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCC-CCEEEEEEEECCCCCCCCE
Confidence 3789999999999998887 8999999999999999999999999999999999999877 78899999999988 8999
Q ss_pred eEEEEEcCCCCCCC
Q 004208 117 IGKIKIDMPDIPKR 130 (768)
Q Consensus 117 lG~~~i~l~~l~~~ 130 (768)
||++.+++.++...
T Consensus 79 iG~a~i~l~~l~~~ 92 (145)
T cd04038 79 MGEAEIDLEPLVEA 92 (145)
T ss_pred EEEEEEEHHHhhhh
Confidence 99999999998754
No 128
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.65 E-value=1.2e-15 Score=139.86 Aligned_cols=103 Identities=24% Similarity=0.357 Sum_probs=83.3
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---C--eEEeeecccCCCCCCcccceEEEEecCC--CCCcEEEEEEecc
Q 004208 200 WYLRVNVIEAQDLVPKQRNRNPEVFIKAIFG---N--VVLKTTVSAKKTVNPTWNEDLMFVAAEP--FDDPLILTVEDKL 272 (768)
Q Consensus 200 ~~L~V~v~~a~~L~~~d~~~~~dpyV~v~lg---~--~~~~T~~i~~~t~nP~wne~f~f~~~~~--~~~~L~i~V~d~d 272 (768)
..|.|+|++|+||+..+..+.+||||++++. . .+.+|+++++ +.||+|||+|.|.+... .+..|.|+|||+|
T Consensus 15 ~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~-t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~d 93 (136)
T cd08406 15 ERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRD-DTNPIFNEAMIFSVPAIVLQDLSLRVTVAEST 93 (136)
T ss_pred CEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccC-CCCCeeceeEEEECCHHHhCCcEEEEEEEeCC
Confidence 3699999999999999988999999999992 2 2568888887 99999999999998643 4568999999999
Q ss_pred CCCCCceeEEEEEeccccccccCCCCCCceeEEcccC
Q 004208 273 GDNKEECLGRLVLPLSKAGKRFLPLPAAAIWYNLERN 309 (768)
Q Consensus 273 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~~ 309 (768)
..+++++||++.++..... ....+|..+...
T Consensus 94 ~~~~~~~iG~v~lg~~~~g------~~~~hW~~ml~~ 124 (136)
T cd08406 94 EDGKTPNVGHVIIGPAASG------MGLSHWNQMLAS 124 (136)
T ss_pred CCCCCCeeEEEEECCCCCC------hhHHHHHHHHHC
Confidence 9999999999999875422 224556555443
No 129
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.65 E-value=1.9e-15 Score=143.35 Aligned_cols=131 Identities=27% Similarity=0.341 Sum_probs=104.1
Q ss_pred ceEEEEEEEEcccCCccccccccccccccccccccccccceeecCCeeEEEEEEEEeecCCCCCCCCCCCcEEEEEE---
Q 004208 153 RGELMFAIWFGTQADEAFSSAWHSDTAVVSGENIMNCRSKVYVSPKLWYLRVNVIEAQDLVPKQRNRNPEVFIKAIF--- 229 (768)
Q Consensus 153 ~G~i~l~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~L~V~v~~a~~L~~~d~~~~~dpyV~v~l--- 229 (768)
+|+|.+++.|.++.++.... ...+..+.|.|+|++|+||+..+..+.+||||++++
T Consensus 1 ~G~l~~~l~y~~~~~~~~~~---------------------~~~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~ 59 (162)
T cd04020 1 RGELKVALKYVPPESEGALK---------------------SKKPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPD 59 (162)
T ss_pred CceEEEEEEecCcccccccc---------------------ccCCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcC
Confidence 49999999998765432110 012245689999999999999998899999999988
Q ss_pred --CCeEEeeecccCCCCCCcccceEEEEecCC---CCCcEEEEEEeccCCCCCceeEEEEEeccccccccCCCCCCceeE
Q 004208 230 --GNVVLKTTVSAKKTVNPTWNEDLMFVAAEP---FDDPLILTVEDKLGDNKEECLGRLVLPLSKAGKRFLPLPAAAIWY 304 (768)
Q Consensus 230 --g~~~~~T~~i~~~t~nP~wne~f~f~~~~~---~~~~L~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~ 304 (768)
+.++++|+++++ +.||.|||+|.|.+... .+..|.|+|||++..+++++||++.++++++... .....|+
T Consensus 60 ~~~~~~~kT~vi~~-t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~~~----~~~~~w~ 134 (162)
T cd04020 60 KSKKSKQKTPVVKK-SVNPVWNHTFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTGKSY----GQAVDWM 134 (162)
T ss_pred CCCCcceeCCccCC-CCCCCCCCEEEEecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCccccC----CCccccc
Confidence 346789999987 99999999999985322 3457999999999988899999999999998632 3467888
Q ss_pred EcccC
Q 004208 305 NLERN 309 (768)
Q Consensus 305 ~L~~~ 309 (768)
.+.+.
T Consensus 135 ~~~~~ 139 (162)
T cd04020 135 DSTGE 139 (162)
T ss_pred cCChH
Confidence 87653
No 130
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.65 E-value=6.2e-16 Score=141.57 Aligned_cols=100 Identities=26% Similarity=0.318 Sum_probs=86.2
Q ss_pred CCcccccccccccccEEEEEEEEeecCCCCCC--CCCCCcEEEEEECC-----eeeEeeeecCCCCCeeeeEEEEEec--
Q 004208 25 RERLTSSFDLVEQMEFLYVRIVRARDLQVNQV--TGTCDPYVEVKIGN-----YKGTTIPFEKKLNPEWNQVFAFTKE-- 95 (768)
Q Consensus 25 ~~~~~~~~~~~~~~~~L~V~i~~a~~L~~~d~--~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~Wne~f~f~~~-- 95 (768)
...+++.|... .+.|.|+|++|+||...|. .+.+||||+|++.+ .+.||++++++.||+|||+|.|.+.
T Consensus 3 el~~sL~Y~~~--~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~ 80 (138)
T cd08407 3 EVLLSISYLPA--ANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSE 80 (138)
T ss_pred EEEEEEEEeCC--CCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHH
Confidence 45688888853 5789999999999999883 35599999999875 2568999999999999999999985
Q ss_pred cCCCceEEEEEEEcCCC-CCceeEEEEEcCCC
Q 004208 96 RLQAISVELLVKDKMIV-NGDFIGKIKIDMPD 126 (768)
Q Consensus 96 ~~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~ 126 (768)
++....|.|+|||+|.+ ++++||++.+.+..
T Consensus 81 ~L~~~~L~~~V~d~d~~~~~d~iG~v~lg~~~ 112 (138)
T cd08407 81 LLAASSVELEVLNQDSPGQSLPLGRCSLGLHT 112 (138)
T ss_pred HhCccEEEEEEEeCCCCcCcceeceEEecCcC
Confidence 45578899999999998 99999999999864
No 131
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.64 E-value=1.6e-15 Score=136.78 Aligned_cols=95 Identities=19% Similarity=0.307 Sum_probs=84.2
Q ss_pred CCeeeEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEecCeeeeeccccCCCCCccccEEEEEEeC--CCcEEEEEEEeCC
Q 004208 357 PPVIGVLELGILSAKELLPMKSRDGRGTTDAYCVAKYANKWVRTRTVVDSFDPKWNEQYTWEVYD--PYTVITLVVFDNC 434 (768)
Q Consensus 357 ~~~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~~~~~T~~~~~t~nP~wne~~~~~v~~--~~~~l~v~v~d~~ 434 (768)
...+|.|+|+|++|+||+. +..|.+||||+|+++++.+||++++++.||+|||+|.|.... ....|.|+|||++
T Consensus 24 ~~~~~~L~V~V~~A~~L~~----d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d 99 (127)
T cd04032 24 RRGLATLTVTVLRATGLWG----DYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRD 99 (127)
T ss_pred cCCcEEEEEEEEECCCCCc----CcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCC
Confidence 4678899999999999974 567889999999999999999999999999999999998644 3669999999999
Q ss_pred CCCCCCCCCCceEEEEEeccccccC
Q 004208 435 HLHPGGAKDSRIGKVRIRLSTLETD 459 (768)
Q Consensus 435 ~~~~~~~~d~~lG~~~i~l~~l~~~ 459 (768)
.++ +|++||++.++|.....+
T Consensus 100 ~~s----~dd~IG~~~i~l~~~~~~ 120 (127)
T cd04032 100 NGW----DDDLLGTCSVVPEAGVHE 120 (127)
T ss_pred CCC----CCCeeEEEEEEecCCcee
Confidence 865 899999999999977654
No 132
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.64 E-value=4e-15 Score=138.06 Aligned_cols=119 Identities=18% Similarity=0.250 Sum_probs=95.5
Q ss_pred EEEEEEEeec--CCCCCCCCCCCcEEEEEE--C---CeeeEeeeecCCCCCeeeeEEEEEeccC--------CCceEEEE
Q 004208 41 LYVRIVRARD--LQVNQVTGTCDPYVEVKI--G---NYKGTTIPFEKKLNPEWNQVFAFTKERL--------QAISVELL 105 (768)
Q Consensus 41 L~V~i~~a~~--L~~~d~~g~~dPyv~v~~--~---~~~~~T~~~~~t~nP~Wne~f~f~~~~~--------~~~~L~i~ 105 (768)
..++|..|++ |+..+..+.+||||++++ . .++.||+++++|+||+|||+|.|.+... ....|.|+
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~ 83 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE 83 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence 4566666666 677777889999999997 2 3689999999999999999999998543 35679999
Q ss_pred EEEcCCC--CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCCCccceEEEEEEEEccc
Q 004208 106 VKDKMIV--NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGSRARGELMFAIWFGTQ 165 (768)
Q Consensus 106 V~d~~~~--~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~i~~~~~ 165 (768)
|||++.+ +|++||++.++|..+.... ....|++|.+.. ...-|.|.+.+.....
T Consensus 84 V~d~~~f~~~D~~iG~~~i~L~~l~~~~-----~~~~~~~L~~~~-k~~Gg~l~v~ir~r~p 139 (155)
T cd08690 84 VYHKGGFLRSDKLLGTAQVKLEPLETKC-----EIHESVDLMDGR-KATGGKLEVKVRLREP 139 (155)
T ss_pred EEeCCCcccCCCeeEEEEEEcccccccC-----cceEEEEhhhCC-CCcCCEEEEEEEecCC
Confidence 9999986 7999999999999997653 246799988532 2356999999987643
No 133
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.64 E-value=1.3e-15 Score=138.91 Aligned_cols=112 Identities=25% Similarity=0.292 Sum_probs=95.4
Q ss_pred EEEEEEEecCCCCCCCCCCCCCcCcEEEEEecC-eeeeecccc-CCCCCccccEEEEEEeCC-----CcEEEEEEEeCCC
Q 004208 363 LELGILSAKELLPMKSRDGRGTTDAYCVAKYAN-KWVRTRTVV-DSFDPKWNEQYTWEVYDP-----YTVITLVVFDNCH 435 (768)
Q Consensus 363 l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~-~~~~T~~~~-~t~nP~wne~~~~~v~~~-----~~~l~v~v~d~~~ 435 (768)
|+|+|++|+||+.. +..+++||||++++++ +..+|+++. ++.||.|||.|.|.+.++ ...|.|+|||++.
T Consensus 2 L~V~V~sA~~L~~~---~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~ 78 (125)
T cd04051 2 LEITIISAEDLKNV---NLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERP 78 (125)
T ss_pred EEEEEEEcccCCCC---CcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCC
Confidence 88999999999985 5678999999999988 889999985 589999999999999876 5799999999987
Q ss_pred CCCCCCCCCceEEEEEeccccccCce-----eeeeEeeeecCCCCcccccEEEE
Q 004208 436 LHPGGAKDSRIGKVRIRLSTLETDRI-----YTHSYPLVALLPNGVKKMGEVQL 484 (768)
Q Consensus 436 ~~~~~~~d~~lG~~~i~l~~l~~~~~-----~~~~~~L~~~~~~g~~~~G~i~l 484 (768)
++ +|++||++.++|.++..+.. ...||+|.... ++..|.|++
T Consensus 79 ~~----~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~---g~~~G~~~~ 125 (125)
T cd04051 79 SL----GDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPS---GKPQGVLNF 125 (125)
T ss_pred CC----CCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCC---CCcCeEEeC
Confidence 55 79999999999999987643 46899998643 345588874
No 134
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.64 E-value=2.5e-15 Score=136.63 Aligned_cols=118 Identities=25% Similarity=0.314 Sum_probs=96.2
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-eeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcCCC-CCcee
Q 004208 40 FLYVRIVRARDLQVNQVTGTCDPYVEVKIGNY-KGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIV-NGDFI 117 (768)
Q Consensus 40 ~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~~-~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~~-~d~~l 117 (768)
.|.|+|.+|+ |...+..+.+||||+++++++ ..+|++++++.||+|||+|.|.+.. ...|.|+|||++.. .+++|
T Consensus 3 ~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~--~~~l~~~V~d~~~~~~~~~i 79 (125)
T cd04021 3 QLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTP--QSTLEFKVWSHHTLKADVLL 79 (125)
T ss_pred eEEEEEEeeE-CCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCC--CCEEEEEEEeCCCCCCCcEE
Confidence 6999999998 555555788999999999987 8999999999999999999999864 57899999999998 99999
Q ss_pred EEEEEcCCCCCCCCCCCCCCCCeEEEcccCC--CCccceEEEEEE
Q 004208 118 GKIKIDMPDIPKRVPPDSPLAPEWKRLEAKD--GSRARGELMFAI 160 (768)
Q Consensus 118 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~--~~~~~G~i~l~i 160 (768)
|++.++|.++.............|+++..+. +....|+|.+.+
T Consensus 80 G~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 80 GEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred EEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 9999999998765322222223588887655 234679988764
No 135
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.64 E-value=1.5e-15 Score=140.08 Aligned_cols=115 Identities=17% Similarity=0.306 Sum_probs=94.7
Q ss_pred CcccccccccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC------eeeEeeeecCCCCCeeeeEEEEEec--cC
Q 004208 26 ERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGN------YKGTTIPFEKKLNPEWNQVFAFTKE--RL 97 (768)
Q Consensus 26 ~~~~~~~~~~~~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~------~~~~T~~~~~t~nP~Wne~f~f~~~--~~ 97 (768)
..+++.|+- ..+.|.|+|++|+||+..+..|.+||||++.+.+ .+++|++++++.||+|||+|.|.+. ++
T Consensus 4 i~~sL~Y~~--~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l 81 (138)
T cd08408 4 LLLGLEYNA--LTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQL 81 (138)
T ss_pred EEEEeEEcC--CCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHh
Confidence 467888985 4579999999999999999899999999999953 2568999999999999999999975 45
Q ss_pred CCceEEEEEEEcCCC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCC
Q 004208 98 QAISVELLVKDKMIV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKD 148 (768)
Q Consensus 98 ~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 148 (768)
....|.|.|||.+.+ ++++||++.+++...-.. ...+|..+....
T Consensus 82 ~~~~L~~~V~~~~~~~~~~~iG~v~l~~~~~~~~------~~~hW~~~l~~~ 127 (138)
T cd08408 82 SEVTLMFSVYNKRKMKRKEMIGWFSLGLNSSGEE------EEEHWNEMKESK 127 (138)
T ss_pred CccEEEEEEEECCCCCCCcEEEEEEECCcCCCch------HHHHHHHHHhCC
Confidence 677999999999988 999999999988754321 124677765543
No 136
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.63 E-value=4.6e-15 Score=135.58 Aligned_cols=118 Identities=23% Similarity=0.325 Sum_probs=99.7
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eEEeeecccCCCCCCcccceEEEEecCCCCCcEEEEEEeccCCCCC
Q 004208 201 YLRVNVIEAQDLVPKQRNRNPEVFIKAIFGN---VVLKTTVSAKKTVNPTWNEDLMFVAAEPFDDPLILTVEDKLGDNKE 277 (768)
Q Consensus 201 ~L~V~v~~a~~L~~~d~~~~~dpyV~v~lg~---~~~~T~~i~~~t~nP~wne~f~f~~~~~~~~~L~i~V~d~d~~~~d 277 (768)
.++|+|++|++|+..+..+.+||||++.+++ +..+|+++++ +.||.|||+|.|.+.......|.|+|||++..+++
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~-t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~ 80 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYD-TLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKH 80 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecC-CCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCC
Confidence 5899999999999999889999999999853 4679999887 99999999999999876667899999999988889
Q ss_pred ceeEEEEEeccccccccCCCCCCceeEEcccCccCccccccccccceEEEEEecCC
Q 004208 278 ECLGRLVLPLSKAGKRFLPLPAAAIWYNLERNIANGEEKKDVRFASRICLRFSLDG 333 (768)
Q Consensus 278 ~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~g~~~~~~~~~g~i~l~v~~~~ 333 (768)
++||++.++|.++... ..+.....|++|.+. |++++++++++
T Consensus 81 ~~iG~~~i~l~~~~~~-~~~~~~~~w~~l~~~-------------g~i~l~~~~~~ 122 (126)
T cd04043 81 DLCGRASLKLDPKRFG-DDGLPREIWLDLDTQ-------------GRLLLRVSMEG 122 (126)
T ss_pred ceEEEEEEecCHHHcC-CCCCCceEEEEcCCC-------------CeEEEEEEEee
Confidence 9999999999876432 113456789999763 78999888754
No 137
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.63 E-value=5.3e-16 Score=143.59 Aligned_cols=116 Identities=29% Similarity=0.394 Sum_probs=96.4
Q ss_pred CCcccccccccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeEeeeecCCCCCeeeeEEEEEecc--C
Q 004208 25 RERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGN-----YKGTTIPFEKKLNPEWNQVFAFTKER--L 97 (768)
Q Consensus 25 ~~~~~~~~~~~~~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~Wne~f~f~~~~--~ 97 (768)
...+++.|+. ..+.|.|+|++|+||+..|..|.+||||++++.+ .+.+|++++++.||+|||+|.|.+.. .
T Consensus 3 ~l~~~l~y~~--~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~ 80 (136)
T cd08404 3 ELLLSLCYQP--TTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEEL 80 (136)
T ss_pred eEEEEEEEeC--CCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHh
Confidence 4578888875 3578999999999999999899999999999853 25689999999999999999999753 3
Q ss_pred CCceEEEEEEEcCCC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCC
Q 004208 98 QAISVELLVKDKMIV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDG 149 (768)
Q Consensus 98 ~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 149 (768)
....|.|+|||++.+ ++++||++.+++... + ....+|+.|....+
T Consensus 81 ~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~~--~-----~~~~~w~~l~~~~~ 126 (136)
T cd08404 81 EDISVEFLVLDSDRVTKNEVIGRLVLGPKAS--G-----SGGHHWKEVCNPPR 126 (136)
T ss_pred CCCEEEEEEEECCCCCCCccEEEEEECCcCC--C-----chHHHHHHHHhCCC
Confidence 456899999999998 899999999999882 2 12578988876543
No 138
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.63 E-value=2.9e-15 Score=135.88 Aligned_cols=103 Identities=17% Similarity=0.228 Sum_probs=87.7
Q ss_pred eeeEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEec---CeeeeeccccCCCCCccccEEEEE-EeC---CCcEEEEEEE
Q 004208 359 VIGVLELGILSAKELLPMKSRDGRGTTDAYCVAKYA---NKWVRTRTVVDSFDPKWNEQYTWE-VYD---PYTVITLVVF 431 (768)
Q Consensus 359 ~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g---~~~~~T~~~~~t~nP~wne~~~~~-v~~---~~~~l~v~v~ 431 (768)
..+.|.|+|++|+||++. +..|.+||||++.+. .+..||+++++ .||+|||+|.|+ +.. ....|.++||
T Consensus 14 ~~~~L~V~Vi~a~nL~~~---~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~ 89 (124)
T cd08389 14 SARKLTVTVIRAQDIPTK---DRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLY 89 (124)
T ss_pred CCCEEEEEEEEecCCCch---hcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEE
Confidence 345699999999999985 567889999997772 35689999887 999999999998 543 3458999999
Q ss_pred eCCCCCCCCCCCCceEEEEEeccccccCceeeeeEeee
Q 004208 432 DNCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPLV 469 (768)
Q Consensus 432 d~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 469 (768)
|++.++ ++++||.+.|+|+++..+.....||+|.
T Consensus 90 ~~~~~~----~~~~lG~~~i~L~~l~~~~~~~~w~~L~ 123 (124)
T cd08389 90 GVERMR----KERLIGEKVVPLSQLNLEGETTVWLTLE 123 (124)
T ss_pred ECCCcc----cCceEEEEEEeccccCCCCCceEEEeCC
Confidence 999865 8999999999999998888888999984
No 139
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.63 E-value=1.6e-15 Score=139.87 Aligned_cols=103 Identities=24% Similarity=0.480 Sum_probs=90.8
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEC----CeeeEeeeecCCCCCeeeeEEEEEeccC---------------CCce
Q 004208 41 LYVRIVRARDLQVNQVTGTCDPYVEVKIG----NYKGTTIPFEKKLNPEWNQVFAFTKERL---------------QAIS 101 (768)
Q Consensus 41 L~V~i~~a~~L~~~d~~g~~dPyv~v~~~----~~~~~T~~~~~t~nP~Wne~f~f~~~~~---------------~~~~ 101 (768)
|.|+|++|++|+.. ..|.+||||+++++ +++.+|++++++.||.|||+|.|.+... ....
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence 57999999999988 78899999999998 6788999999999999999999997654 4678
Q ss_pred EEEEEEEcCCC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCC
Q 004208 102 VELLVKDKMIV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDG 149 (768)
Q Consensus 102 L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 149 (768)
|.|+|||.+.. ++++||++.+++.++.... ....|++|.+...
T Consensus 80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~-----~~~~W~~L~~~~~ 123 (137)
T cd08675 80 LRVELWHASMVSGDDFLGEVRIPLQGLQQAG-----SHQAWYFLQPREA 123 (137)
T ss_pred EEEEEEcCCcCcCCcEEEEEEEehhhccCCC-----cccceEecCCcCC
Confidence 99999999998 9999999999999987542 2589999998753
No 140
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.63 E-value=6e-16 Score=142.72 Aligned_cols=117 Identities=22% Similarity=0.370 Sum_probs=93.7
Q ss_pred CCcccccccccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeEeeeecCCCCCeeeeEEEEEec--cC
Q 004208 25 RERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGN-----YKGTTIPFEKKLNPEWNQVFAFTKE--RL 97 (768)
Q Consensus 25 ~~~~~~~~~~~~~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~Wne~f~f~~~--~~ 97 (768)
...+++.|... .+.|.|+|++|++|+..|..|.+||||++.+.+ .+.+|+++++|.||+|||+|.|.+. ++
T Consensus 2 ~i~~~l~y~~~--~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l 79 (135)
T cd08410 2 ELLLSLNYLPS--AGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEEL 79 (135)
T ss_pred cEEEEEEECCC--CCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHh
Confidence 45688888853 589999999999999999889999999999732 3578999999999999999999974 34
Q ss_pred CCceEEEEEEEcCCC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCC
Q 004208 98 QAISVELLVKDKMIV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDG 149 (768)
Q Consensus 98 ~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 149 (768)
....|.|+|||++.. ++++||++.|........ ...+|..|....+
T Consensus 80 ~~~~l~~~V~d~d~~~~~~~iG~~~l~~~~~~~~------~~~~W~~l~~~~~ 126 (135)
T cd08410 80 ENVSLVFTVYGHNVKSSNDFIGRIVIGQYSSGPS------ETNHWRRMLNSQR 126 (135)
T ss_pred CCCEEEEEEEeCCCCCCCcEEEEEEEcCccCCch------HHHHHHHHHhCCC
Confidence 455799999999988 999999998765333221 1367877766544
No 141
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.63 E-value=3.6e-15 Score=134.19 Aligned_cols=93 Identities=15% Similarity=0.272 Sum_probs=76.5
Q ss_pred CCeeEEEEEEEEeecCCCCCCCCCCCcEEEEEE---CC--eEEeeecccCCCC-CCcccceEEEEecCCC-CCcEEEEEE
Q 004208 197 PKLWYLRVNVIEAQDLVPKQRNRNPEVFIKAIF---GN--VVLKTTVSAKKTV-NPTWNEDLMFVAAEPF-DDPLILTVE 269 (768)
Q Consensus 197 p~~~~L~V~v~~a~~L~~~d~~~~~dpyV~v~l---g~--~~~~T~~i~~~t~-nP~wne~f~f~~~~~~-~~~L~i~V~ 269 (768)
|..++|+|.|++|+||+.++..+.+||||+|.+ ++ .+.||+++++ ++ ||+|||+|.|.+.... +-.|.|+||
T Consensus 11 p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~-t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~ 89 (135)
T cd08692 11 AVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKS-SNGQVKWGETMIFPVTQQEHGIQFLIKLY 89 (135)
T ss_pred CcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEEC-CCCCceecceEEEeCCchhheeEEEEEEE
Confidence 344679999999999998876777899999998 22 4678888887 74 6999999999987643 336888899
Q ss_pred eccCCCCCceeEEEEEecccc
Q 004208 270 DKLGDNKEECLGRLVLPLSKA 290 (768)
Q Consensus 270 d~d~~~~d~~lG~~~i~l~~l 290 (768)
|++..+++++||++.++.+..
T Consensus 90 d~~~~~~n~~IG~v~lG~~~~ 110 (135)
T cd08692 90 SRSSVRRKHFLGQVWISSDSS 110 (135)
T ss_pred eCCCCcCCceEEEEEECCccC
Confidence 999888999999999999763
No 142
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.63 E-value=6.6e-16 Score=143.05 Aligned_cols=116 Identities=25% Similarity=0.360 Sum_probs=95.0
Q ss_pred CCCcccccccccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeEeeeecCCCCCeeeeEEEEEec--c
Q 004208 24 GRERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGN-----YKGTTIPFEKKLNPEWNQVFAFTKE--R 96 (768)
Q Consensus 24 ~~~~~~~~~~~~~~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~Wne~f~f~~~--~ 96 (768)
|...+++.|+- ..+.|.|+|++|++|+..|..|.+||||+|++++ .+.+|++++++.||+|||+|.|.+. +
T Consensus 2 G~l~~~l~y~~--~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~ 79 (136)
T cd08402 2 GDICFSLRYVP--TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQ 79 (136)
T ss_pred cEEEEEeEEcC--CCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHH
Confidence 34567888885 4689999999999999999899999999999953 3568999999999999999999975 3
Q ss_pred CCCceEEEEEEEcCCC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCC
Q 004208 97 LQAISVELLVKDKMIV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKD 148 (768)
Q Consensus 97 ~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 148 (768)
+....|.|+|||++.+ +|++||++.+++..... ....|+++...+
T Consensus 80 l~~~~l~~~v~d~~~~~~~~~iG~~~i~~~~~~~-------~~~~W~~~~~~~ 125 (136)
T cd08402 80 IQKVHLIVTVLDYDRIGKNDPIGKVVLGCNATGA-------ELRHWSDMLASP 125 (136)
T ss_pred hCCCEEEEEEEeCCCCCCCceeEEEEECCccCCh-------HHHHHHHHHhCC
Confidence 3345899999999988 89999999999975421 146777776543
No 143
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.63 E-value=6.9e-16 Score=142.92 Aligned_cols=116 Identities=30% Similarity=0.465 Sum_probs=95.1
Q ss_pred CCCcccccccccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---eeeEeeeecCCCCCeeeeEEEEEec--c
Q 004208 24 GRERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIG--N---YKGTTIPFEKKLNPEWNQVFAFTKE--R 96 (768)
Q Consensus 24 ~~~~~~~~~~~~~~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~--~---~~~~T~~~~~t~nP~Wne~f~f~~~--~ 96 (768)
|...+++.|+-. .+.|.|+|++|+||...+..|.+||||++++. + .+.+|++++++.||+|||+|.|.+. +
T Consensus 2 G~l~~sl~y~~~--~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~ 79 (136)
T cd08405 2 GELLLSLCYNPT--ANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLER 79 (136)
T ss_pred cEEEEEEEEcCC--CCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHH
Confidence 456788899853 57899999999999998889999999999983 2 3578999999999999999999864 3
Q ss_pred CCCceEEEEEEEcCCC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCC
Q 004208 97 LQAISVELLVKDKMIV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKD 148 (768)
Q Consensus 97 ~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 148 (768)
+....|.|+|||++.. ++++||++.+++.+... ....|+++...+
T Consensus 80 ~~~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~~~-------~~~~w~~~~~~~ 125 (136)
T cd08405 80 LRETTLIITVMDKDRLSRNDLIGKIYLGWKSGGL-------ELKHWKDMLSKP 125 (136)
T ss_pred hCCCEEEEEEEECCCCCCCcEeEEEEECCccCCc-------hHHHHHHHHhCC
Confidence 4456899999999988 89999999999987621 135666665543
No 144
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.63 E-value=3.1e-15 Score=134.71 Aligned_cols=104 Identities=26% Similarity=0.380 Sum_probs=91.9
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-eeeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcCCC-CCce
Q 004208 39 EFLYVRIVRARDLQVNQVTGTCDPYVEVKIGN-YKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIV-NGDF 116 (768)
Q Consensus 39 ~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~-~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~~-~d~~ 116 (768)
|.|+|+|++|++|+..+..+.+||||++++++ .+.+|++++++.||+|||+|.|.+... ...|.|+|||++.. +|++
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~-~~~L~v~v~d~~~~~~d~~ 79 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSP-NQKITLEVMDYEKVGKDRS 79 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCC-CCEEEEEEEECCCCCCCCe
Confidence 57999999999999998889999999999987 568999999999999999999998765 57899999999998 8999
Q ss_pred eEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCC
Q 004208 117 IGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDG 149 (768)
Q Consensus 117 lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 149 (768)
||++.+++.++.... ...||.|.+...
T Consensus 80 IG~~~~~l~~l~~~~------~~~~~~~~~~~~ 106 (120)
T cd04045 80 LGSVEINVSDLIKKN------EDGKYVEYDDEE 106 (120)
T ss_pred eeEEEEeHHHhhCCC------CCceEEecCCCc
Confidence 999999999997652 367888877653
No 145
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.63 E-value=4.4e-15 Score=135.14 Aligned_cols=105 Identities=16% Similarity=0.225 Sum_probs=90.1
Q ss_pred CeeeEEEEEEEEecCCCCCCCCC-CCCCcCcEEEEEec---CeeeeeccccCCCCCccccEEEEEEeCC---CcEEEEEE
Q 004208 358 PVIGVLELGILSAKELLPMKSRD-GRGTTDAYCVAKYA---NKWVRTRTVVDSFDPKWNEQYTWEVYDP---YTVITLVV 430 (768)
Q Consensus 358 ~~~g~l~v~v~~a~~L~~~~~~~-~~g~~dpyv~v~~g---~~~~~T~~~~~t~nP~wne~~~~~v~~~---~~~l~v~v 430 (768)
+..+.|.|.|++|+||+.+ + ..+.+||||++++. .+..+|++++++.||.|||.|.|.+... ...|.|+|
T Consensus 11 ~~~~~L~V~v~~a~~L~~~---~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v 87 (123)
T cd08390 11 LEEEQLTVSLIKARNLPPR---TKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSV 87 (123)
T ss_pred CCCCEEEEEEEEecCCCCc---cCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEE
Confidence 3455799999999999985 4 56789999999983 3568999999999999999999998752 35899999
Q ss_pred EeCCCCCCCCCCCCceEEEEEeccccccCceeeeeEeee
Q 004208 431 FDNCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPLV 469 (768)
Q Consensus 431 ~d~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 469 (768)
||.+..+ ++++||++.++|+++........|++|.
T Consensus 88 ~d~~~~~----~~~~iG~~~i~L~~l~~~~~~~~w~~L~ 122 (123)
T cd08390 88 YDVDRFS----RHCIIGHVLFPLKDLDLVKGGVVWRDLE 122 (123)
T ss_pred EECCcCC----CCcEEEEEEEeccceecCCCceEEEeCC
Confidence 9998754 7899999999999999888778999984
No 146
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.63 E-value=1.2e-15 Score=140.48 Aligned_cols=104 Identities=25% Similarity=0.340 Sum_probs=89.5
Q ss_pred CCcccccccccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------eeeEeeeecCCCCCeeeeEEEEEeccC
Q 004208 25 RERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGN-------YKGTTIPFEKKLNPEWNQVFAFTKERL 97 (768)
Q Consensus 25 ~~~~~~~~~~~~~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~-------~~~~T~~~~~t~nP~Wne~f~f~~~~~ 97 (768)
...+++.|+- ....|.|+|++|++|+..+..|.+||||+|++.+ .+++|+++++|.||+|||+|.|.+...
T Consensus 4 ~l~~~l~y~~--~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~ 81 (133)
T cd04009 4 VLTVKAYYRA--SEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPE 81 (133)
T ss_pred EEEEEEEEcC--CCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechh
Confidence 3456667764 4678999999999999988889999999999963 468999999999999999999997642
Q ss_pred ----CCceEEEEEEEcCCC-CCceeEEEEEcCCCCCCC
Q 004208 98 ----QAISVELLVKDKMIV-NGDFIGKIKIDMPDIPKR 130 (768)
Q Consensus 98 ----~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~ 130 (768)
....|.|+|||++.. ++++||++.++|.++..-
T Consensus 82 ~~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~~ 119 (133)
T cd04009 82 QCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDIPGV 119 (133)
T ss_pred hcccCCCEEEEEEEecCCCCCCcEeEEEEEeHHHCCcc
Confidence 356899999999998 799999999999998743
No 147
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.63 E-value=2.2e-15 Score=139.47 Aligned_cols=91 Identities=31% Similarity=0.550 Sum_probs=84.0
Q ss_pred eeEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEecCeeeeeccccCCCCCccccEEEEEEeCCCcEEEEEEEeCCCCCCC
Q 004208 360 IGVLELGILSAKELLPMKSRDGRGTTDAYCVAKYANKWVRTRTVVDSFDPKWNEQYTWEVYDPYTVITLVVFDNCHLHPG 439 (768)
Q Consensus 360 ~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~~~~~T~~~~~t~nP~wne~~~~~v~~~~~~l~v~v~d~~~~~~~ 439 (768)
+|.|+|+|++|+||+.. +. +.+||||++++|++.++|++++++.||.|||.|.|.+.++...|.|+|||++.++
T Consensus 1 ~G~L~V~Vi~a~nL~~~---d~-~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~~~-- 74 (145)
T cd04038 1 LGLLKVRVVRGTNLAVR---DF-TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMAPLKLEVFDKDTFS-- 74 (145)
T ss_pred CeEEEEEEEeeECCCCC---CC-CCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCCCCEEEEEEEECCCCC--
Confidence 48899999999999874 44 7899999999999999999999999999999999999999889999999999876
Q ss_pred CCCCCceEEEEEecccccc
Q 004208 440 GAKDSRIGKVRIRLSTLET 458 (768)
Q Consensus 440 ~~~d~~lG~~~i~l~~l~~ 458 (768)
+|++||.+.+++.++..
T Consensus 75 --~dd~iG~a~i~l~~l~~ 91 (145)
T cd04038 75 --KDDSMGEAEIDLEPLVE 91 (145)
T ss_pred --CCCEEEEEEEEHHHhhh
Confidence 89999999999998764
No 148
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.62 E-value=2e-15 Score=137.05 Aligned_cols=90 Identities=29% Similarity=0.465 Sum_probs=81.6
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCee--eEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcCCC-CCce
Q 004208 40 FLYVRIVRARDLQVNQVTGTCDPYVEVKIGNYK--GTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIV-NGDF 116 (768)
Q Consensus 40 ~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~~~--~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~~-~d~~ 116 (768)
.|+|+|++|++|+..|..|.+||||++++++++ .+|++++++.||+|||+|.|.+.......|.|+|||++.. +|++
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~ 80 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDL 80 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCce
Confidence 379999999999999999999999999999864 5788889999999999999998766678999999999998 9999
Q ss_pred eEEEEEcCCCCCC
Q 004208 117 IGKIKIDMPDIPK 129 (768)
Q Consensus 117 lG~~~i~l~~l~~ 129 (768)
||++.+++.+...
T Consensus 81 iG~~~i~l~~~~~ 93 (124)
T cd04037 81 IGETVIDLEDRFF 93 (124)
T ss_pred eEEEEEeeccccc
Confidence 9999999998764
No 149
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.62 E-value=2.9e-15 Score=136.46 Aligned_cols=104 Identities=28% Similarity=0.388 Sum_probs=91.9
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeeecC-CCCCeeeeEEEEEeccC---CCceEEEEEEEcCCC-C
Q 004208 39 EFLYVRIVRARDLQVNQVTGTCDPYVEVKIGNYKGTTIPFEK-KLNPEWNQVFAFTKERL---QAISVELLVKDKMIV-N 113 (768)
Q Consensus 39 ~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~-t~nP~Wne~f~f~~~~~---~~~~L~i~V~d~~~~-~ 113 (768)
|.|.|+|++|++|+..+..+.+||||+++++++..+|+++.+ +.||+|||+|.|.+... ....|.|+|||.+.. +
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~ 80 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSD 80 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCC
Confidence 579999999999999888899999999999998889988874 89999999999998765 357899999999988 8
Q ss_pred CceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccC
Q 004208 114 GDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAK 147 (768)
Q Consensus 114 d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 147 (768)
+++||++.+++.++..+. ....|++|.+.
T Consensus 81 d~~iG~~~i~l~~l~~~~-----~~~~~~~l~p~ 109 (124)
T cd04049 81 DDFIGEATIHLKGLFEEG-----VEPGTAELVPA 109 (124)
T ss_pred CCeEEEEEEEhHHhhhCC-----CCcCceEeecc
Confidence 999999999999997653 24789998875
No 150
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.62 E-value=2.9e-15 Score=134.99 Aligned_cols=103 Identities=31% Similarity=0.395 Sum_probs=91.6
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEecC-eeeeeccccCCCCCccccEEEEEEeCCCcEEEEEEEeCCCCCCC
Q 004208 361 GVLELGILSAKELLPMKSRDGRGTTDAYCVAKYAN-KWVRTRTVVDSFDPKWNEQYTWEVYDPYTVITLVVFDNCHLHPG 439 (768)
Q Consensus 361 g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~-~~~~T~~~~~t~nP~wne~~~~~v~~~~~~l~v~v~d~~~~~~~ 439 (768)
|.|+|+|++|+||+.. +..|.+||||++.+++ ...+|+++.++.||.|||.|.|.+.++.+.|.|+|||++.++
T Consensus 1 g~L~V~Vi~a~~L~~~---d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~~~-- 75 (120)
T cd04045 1 GVLRLHIRKANDLKNL---EGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYEKVG-- 75 (120)
T ss_pred CeEEEEEEeeECCCCc---cCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCCCCEEEEEEEECCCCC--
Confidence 6799999999999985 5678999999999976 569999999999999999999999888789999999999865
Q ss_pred CCCCCceEEEEEeccccccCceeeeeEeeeec
Q 004208 440 GAKDSRIGKVRIRLSTLETDRIYTHSYPLVAL 471 (768)
Q Consensus 440 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 471 (768)
+|++||++.+++.++..+ ..+.||-|.+.
T Consensus 76 --~d~~IG~~~~~l~~l~~~-~~~~~~~~~~~ 104 (120)
T cd04045 76 --KDRSLGSVEINVSDLIKK-NEDGKYVEYDD 104 (120)
T ss_pred --CCCeeeEEEEeHHHhhCC-CCCceEEecCC
Confidence 889999999999999887 44788888754
No 151
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.62 E-value=2.9e-15 Score=136.39 Aligned_cols=103 Identities=27% Similarity=0.429 Sum_probs=91.8
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEecCeeeeeccccC-CCCCccccEEEEEEeCC----CcEEEEEEEeCCC
Q 004208 361 GVLELGILSAKELLPMKSRDGRGTTDAYCVAKYANKWVRTRTVVD-SFDPKWNEQYTWEVYDP----YTVITLVVFDNCH 435 (768)
Q Consensus 361 g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~~~~~T~~~~~-t~nP~wne~~~~~v~~~----~~~l~v~v~d~~~ 435 (768)
|.|+|+|++|+||+.. +..+.+||||+++++++.++|+++.+ +.||.|||.|.|.+.++ ...|.|+|||.+.
T Consensus 1 g~L~V~V~~A~~L~~~---~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~ 77 (124)
T cd04049 1 GTLEVLLISAKGLQDT---DFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDN 77 (124)
T ss_pred CeEEEEEEecCCCCCC---CCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECcc
Confidence 6799999999999885 56689999999999999999999875 89999999999999886 4689999999998
Q ss_pred CCCCCCCCCceEEEEEeccccccCceeeeeEeeee
Q 004208 436 LHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPLVA 470 (768)
Q Consensus 436 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 470 (768)
++ +|++||.+.+++.++..+.....||+|..
T Consensus 78 ~~----~d~~iG~~~i~l~~l~~~~~~~~~~~l~p 108 (124)
T cd04049 78 FS----DDDFIGEATIHLKGLFEEGVEPGTAELVP 108 (124)
T ss_pred CC----CCCeEEEEEEEhHHhhhCCCCcCceEeec
Confidence 65 78999999999999988776788998864
No 152
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.62 E-value=3.5e-15 Score=134.05 Aligned_cols=112 Identities=22% Similarity=0.330 Sum_probs=95.5
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC-eeeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcCCC-CCceeE
Q 004208 41 LYVRIVRARDLQVNQVTGTCDPYVEVKIGN-YKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIV-NGDFIG 118 (768)
Q Consensus 41 L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~-~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~~-~d~~lG 118 (768)
|+|+|++|++|+..+..+.+||||++.+++ ..++|+++.++.||.|||+|.|.+.+.....+.|+|||++.. ++++||
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLLG 80 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCceE
Confidence 579999999999988888999999999987 457999999999999999999998765578999999999988 899999
Q ss_pred EEEEcCCCCCCCCCCCCCCCCeEEEcccCCCCccceEEEE
Q 004208 119 KIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGSRARGELMF 158 (768)
Q Consensus 119 ~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l 158 (768)
++.+++.++..+. ....|++|.+.. +...|.+.+
T Consensus 81 ~~~~~l~~l~~~~-----~~~~~~~L~~~g-~~~~~~~~~ 114 (115)
T cd04040 81 SAYIDLSDLEPEE-----TTELTLPLDGQG-GGKLGAVFL 114 (115)
T ss_pred EEEEEHHHcCCCC-----cEEEEEECcCCC-CccCceEEc
Confidence 9999999987652 257899998753 335676643
No 153
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.62 E-value=2.4e-15 Score=138.37 Aligned_cols=115 Identities=27% Similarity=0.403 Sum_probs=98.8
Q ss_pred CCcccccccccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeEeeeecCCCCCeeeeEEEEEeccC-C
Q 004208 25 RERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGN-----YKGTTIPFEKKLNPEWNQVFAFTKERL-Q 98 (768)
Q Consensus 25 ~~~~~~~~~~~~~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~Wne~f~f~~~~~-~ 98 (768)
...++..|+. +.|.|+|++|++|+..+..+.+||||+|.+.+ .+++|++++++.||.|||+|.|.+... .
T Consensus 3 ~~~~~~~~~~----~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~ 78 (131)
T cd04026 3 RIYLKISVKD----NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADK 78 (131)
T ss_pred EEEEEEEECC----CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhc
Confidence 4567777774 78999999999999988888999999999974 578999999999999999999997643 3
Q ss_pred CceEEEEEEEcCCC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCC
Q 004208 99 AISVELLVKDKMIV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDG 149 (768)
Q Consensus 99 ~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 149 (768)
...|.|+|||++.. ++++||++.+++.++... ....||+|.+...
T Consensus 79 ~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~------~~~~w~~L~~~~~ 124 (131)
T cd04026 79 DRRLSIEVWDWDRTTRNDFMGSLSFGVSELIKM------PVDGWYKLLNQEE 124 (131)
T ss_pred CCEEEEEEEECCCCCCcceeEEEEEeHHHhCcC------ccCceEECcCccc
Confidence 56899999999987 899999999999999754 2578999987653
No 154
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.62 E-value=3.2e-15 Score=138.08 Aligned_cols=115 Identities=19% Similarity=0.306 Sum_probs=93.1
Q ss_pred CCCcccccccccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeEeeeecCCCCCeeeeEEEEEec--c
Q 004208 24 GRERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGN-----YKGTTIPFEKKLNPEWNQVFAFTKE--R 96 (768)
Q Consensus 24 ~~~~~~~~~~~~~~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~Wne~f~f~~~--~ 96 (768)
|...+++.|+-. .+.|.|+|++|+||+..+ .+.+||||++.+.+ .+.+|++++++.||+|||+|.|.+. +
T Consensus 2 G~i~~sl~y~~~--~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~ 78 (137)
T cd08409 2 GDIQISLTYNPT--LNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQ 78 (137)
T ss_pred cEEEEEEEECCC--CCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHH
Confidence 346788889853 578999999999999888 88899999999864 3668999999999999999999984 4
Q ss_pred CCCceEEEEEEEcCCC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEccc
Q 004208 97 LQAISVELLVKDKMIV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEA 146 (768)
Q Consensus 97 ~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 146 (768)
+....|.|+|||.+.. ++++||++.+.......+. ....|..+..
T Consensus 79 l~~~~L~~~V~~~~~~~~~~~lG~v~ig~~~~~~~~-----~~~hW~~~~~ 124 (137)
T cd08409 79 LDTASLSLSVMQSGGVRKSKLLGRVVLGPFMYARGK-----ELEHWNDMLS 124 (137)
T ss_pred hCccEEEEEEEeCCCCCCcceEEEEEECCcccCCCh-----HHHHHHHHHh
Confidence 5567899999999988 9999999999865554332 1345655544
No 155
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.62 E-value=4.1e-15 Score=138.25 Aligned_cols=108 Identities=19% Similarity=0.298 Sum_probs=91.0
Q ss_pred EEEEEEEeecCCCCCCCC--------------CCCcEEEEEECCeEEeeecccCCCCCCcccceEEEEecCC-CCCcEEE
Q 004208 202 LRVNVIEAQDLVPKQRNR--------------NPEVFIKAIFGNVVLKTTVSAKKTVNPTWNEDLMFVAAEP-FDDPLIL 266 (768)
Q Consensus 202 L~V~v~~a~~L~~~d~~~--------------~~dpyV~v~lg~~~~~T~~i~~~t~nP~wne~f~f~~~~~-~~~~L~i 266 (768)
|.|+|++|++|+.+|..+ .+||||++.+++++.+|+++++ +.||+|||+|.|.+..+ ..+.|.|
T Consensus 2 ~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~-t~nPvWNE~f~f~v~~p~~~~~l~~ 80 (151)
T cd04018 2 FIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKN-SYNPEWNEQIVFPEMFPPLCERIKI 80 (151)
T ss_pred eEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcC-CCCCCcceEEEEEeeCCCcCCEEEE
Confidence 789999999999988543 6899999999999999999997 99999999999997543 4568999
Q ss_pred EEEeccCCCCCceeEEEEEeccccccccCC---CCCCceeEEcccCc
Q 004208 267 TVEDKLGDNKEECLGRLVLPLSKAGKRFLP---LPAAAIWYNLERNI 310 (768)
Q Consensus 267 ~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~---~~~~~~w~~L~~~~ 310 (768)
+|||+|..+++++||++.+++.++...... ....++|+.|.++.
T Consensus 81 ~v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~~ 127 (151)
T cd04018 81 QIRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGSP 127 (151)
T ss_pred EEEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeecCc
Confidence 999999988999999999999988743111 11357899998764
No 156
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.61 E-value=3.3e-15 Score=137.95 Aligned_cols=115 Identities=23% Similarity=0.347 Sum_probs=93.1
Q ss_pred CCcccccccccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeEeeeecCCCCCeeeeEEEEEecc--C
Q 004208 25 RERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGN-----YKGTTIPFEKKLNPEWNQVFAFTKER--L 97 (768)
Q Consensus 25 ~~~~~~~~~~~~~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~Wne~f~f~~~~--~ 97 (768)
...+++.|.. +.+.|+|+|++|++|+..|..|.+||||++++.+ .+.+|++++++.||+|||+|.|.+.. .
T Consensus 2 ~l~~~~~y~~--~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~ 79 (134)
T cd08403 2 ELMFSLCYLP--TAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENV 79 (134)
T ss_pred eEEEEEEEcC--CCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHh
Confidence 4578888885 4589999999999999999999999999999852 35789999999999999999998743 4
Q ss_pred CCceEEEEEEEcCCC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCC
Q 004208 98 QAISVELLVKDKMIV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKD 148 (768)
Q Consensus 98 ~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 148 (768)
....|.|+|||++.. ++++||++.+++..... ....|+.+...+
T Consensus 80 ~~~~l~~~v~d~~~~~~~~~IG~~~l~~~~~~~-------~~~~w~~~~~~~ 124 (134)
T cd08403 80 DNVSLIIAVVDYDRVGHNELIGVCRVGPNADGQ-------GREHWNEMLANP 124 (134)
T ss_pred CCCEEEEEEEECCCCCCCceeEEEEECCCCCCc-------hHHHHHHHHHCC
Confidence 446799999999998 89999999999763221 135666665443
No 157
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.61 E-value=5.3e-16 Score=157.95 Aligned_cols=103 Identities=27% Similarity=0.423 Sum_probs=92.7
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCeEEeeecccCCCCCCcccceEEEEecCC-CCCcEEEEEEeccCC
Q 004208 201 YLRVNVIEAQDLVPKQRNRNPEVFIKAIF-----GNVVLKTTVSAKKTVNPTWNEDLMFVAAEP-FDDPLILTVEDKLGD 274 (768)
Q Consensus 201 ~L~V~v~~a~~L~~~d~~~~~dpyV~v~l-----g~~~~~T~~i~~~t~nP~wne~f~f~~~~~-~~~~L~i~V~d~d~~ 274 (768)
.|+|+|.+|+||.++|.+|.+||||++.+ +..+++|++++. ++||+|||+|.|.+... .+..|.|+|||||..
T Consensus 181 ~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~-~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDrT 259 (683)
T KOG0696|consen 181 VLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKA-TLNPVWNETFTFKLKPSDKDRRLSIEVWDWDRT 259 (683)
T ss_pred eEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhh-hcCccccceeEEecccccccceeEEEEeccccc
Confidence 59999999999999999999999999999 345789999998 99999999999998654 466899999999999
Q ss_pred CCCceeEEEEEeccccccccCCCCCCceeEEcccC
Q 004208 275 NKEECLGRLVLPLSKAGKRFLPLPAAAIWYNLERN 309 (768)
Q Consensus 275 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~~ 309 (768)
+++||+|+.++.+++|.+. ..+.||.|...
T Consensus 260 sRNDFMGslSFgisEl~K~-----p~~GWyKlLsq 289 (683)
T KOG0696|consen 260 SRNDFMGSLSFGISELQKA-----PVDGWYKLLSQ 289 (683)
T ss_pred ccccccceecccHHHHhhc-----chhhHHHHhhh
Confidence 9999999999999999853 57889998775
No 158
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.61 E-value=1.2e-14 Score=134.84 Aligned_cols=118 Identities=20% Similarity=0.288 Sum_probs=94.4
Q ss_pred EEEEEEEecC--CCCCCCCCCCCCcCcEEEEEe-----cCeeeeeccccCCCCCccccEEEEEEeCC---------CcEE
Q 004208 363 LELGILSAKE--LLPMKSRDGRGTTDAYCVAKY-----ANKWVRTRTVVDSFDPKWNEQYTWEVYDP---------YTVI 426 (768)
Q Consensus 363 l~v~v~~a~~--L~~~~~~~~~g~~dpyv~v~~-----g~~~~~T~~~~~t~nP~wne~~~~~v~~~---------~~~l 426 (768)
..++|..|.| |++. +..+.+||||++++ +.+..||+++++|+||+|||+|.|.|... ...|
T Consensus 4 ~el~i~~~~~~~l~~~---~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L 80 (155)
T cd08690 4 IELTIVRCIGIPLPSG---WNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGL 80 (155)
T ss_pred eEEEEEEeeccccCCC---cCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcE
Confidence 4566666666 5553 66788999999986 34679999999999999999999999654 2479
Q ss_pred EEEEEeCCCCCCCCCCCCceEEEEEeccccccCceeeeeEeeeecCCCCcccccEEEEEEEEE
Q 004208 427 TLVVFDNCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPLVALLPNGVKKMGEVQLAVRFT 489 (768)
Q Consensus 427 ~v~v~d~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~ 489 (768)
.++|||++.+. .+|++||++.++|+.+..+.....|++|... .....|+|+++++..
T Consensus 81 ~~~V~d~~~f~---~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~---~k~~Gg~l~v~ir~r 137 (155)
T cd08690 81 KFEVYHKGGFL---RSDKLLGTAQVKLEPLETKCEIHESVDLMDG---RKATGGKLEVKVRLR 137 (155)
T ss_pred EEEEEeCCCcc---cCCCeeEEEEEEcccccccCcceEEEEhhhC---CCCcCCEEEEEEEec
Confidence 99999998753 2799999999999999887666789998732 223458999999984
No 159
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.61 E-value=1.1e-14 Score=133.25 Aligned_cols=116 Identities=25% Similarity=0.346 Sum_probs=94.7
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------------eeeEeeeecCCCCCee-eeEEEEEeccCCCceEEEE
Q 004208 40 FLYVRIVRARDLQVNQVTGTCDPYVEVKIGN-------------YKGTTIPFEKKLNPEW-NQVFAFTKERLQAISVELL 105 (768)
Q Consensus 40 ~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~-------------~~~~T~~~~~t~nP~W-ne~f~f~~~~~~~~~L~i~ 105 (768)
...|++++|+||+ ++..|.+||||++.+.+ ++++|+++++++||+| ||+|.|.+.. .+.|.|+
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~--~~~L~v~ 78 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLP--TDVLEIE 78 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCC--CCEEEEE
Confidence 4678999999998 77789999999999953 3689999999999999 9999999853 5689999
Q ss_pred EEEcCCC----CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCC-CccceEEEEEE
Q 004208 106 VKDKMIV----NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDG-SRARGELMFAI 160 (768)
Q Consensus 106 V~d~~~~----~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~-~~~~G~i~l~i 160 (768)
|||++.. .+++||++.+++.++..... .....+|++|+.... +...|+|.+.+
T Consensus 79 V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~--~~~~~~~~~l~k~~~~s~v~G~~~l~~ 136 (137)
T cd08691 79 VKDKFAKSRPIIRRFLGKLSIPVQRLLERHA--IGDQELSYTLGRRTPTDHVSGQLTFRF 136 (137)
T ss_pred EEecCCCCCccCCceEEEEEEEHHHhccccc--CCceEEEEECCcCCCCCcEEEEEEEEe
Confidence 9998653 27999999999999976532 223568999986653 34789998764
No 160
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.60 E-value=8.5e-15 Score=135.60 Aligned_cols=104 Identities=25% Similarity=0.306 Sum_probs=85.1
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---eEEeeecccCCCCCCcccceEEEEecCC--CCCcEEEEEEec
Q 004208 199 LWYLRVNVIEAQDLVPKQRNRNPEVFIKAIFG--N---VVLKTTVSAKKTVNPTWNEDLMFVAAEP--FDDPLILTVEDK 271 (768)
Q Consensus 199 ~~~L~V~v~~a~~L~~~d~~~~~dpyV~v~lg--~---~~~~T~~i~~~t~nP~wne~f~f~~~~~--~~~~L~i~V~d~ 271 (768)
.+.|+|.|++|++|+.++..+.+||||++.++ + ...+|+++++ +.||.|||+|.|.+... ....|.|+|||+
T Consensus 14 ~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~i~~~~l~~~~l~~~v~d~ 92 (136)
T cd08402 14 AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKR-TLNPYYNESFSFEVPFEQIQKVHLIVTVLDY 92 (136)
T ss_pred CCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeC-CCCCcccceEEEECCHHHhCCCEEEEEEEeC
Confidence 35699999999999999999999999999994 2 3567888876 99999999999998643 234799999999
Q ss_pred cCCCCCceeEEEEEeccccccccCCCCCCceeEEcccC
Q 004208 272 LGDNKEECLGRLVLPLSKAGKRFLPLPAAAIWYNLERN 309 (768)
Q Consensus 272 d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~~ 309 (768)
+..+++++||++.+++.... ....+|+++...
T Consensus 93 ~~~~~~~~iG~~~i~~~~~~------~~~~~W~~~~~~ 124 (136)
T cd08402 93 DRIGKNDPIGKVVLGCNATG------AELRHWSDMLAS 124 (136)
T ss_pred CCCCCCceeEEEEECCccCC------hHHHHHHHHHhC
Confidence 99999999999999997643 235666666554
No 161
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.60 E-value=1.3e-14 Score=130.86 Aligned_cols=111 Identities=30% Similarity=0.474 Sum_probs=88.3
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCe-eeEeeeecCCCCCeeeeEEEEEeccC--CCceEEEEEEEcCCC-CCce
Q 004208 41 LYVRIVRARDLQVNQVTGTCDPYVEVKIGNY-KGTTIPFEKKLNPEWNQVFAFTKERL--QAISVELLVKDKMIV-NGDF 116 (768)
Q Consensus 41 L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~~-~~~T~~~~~t~nP~Wne~f~f~~~~~--~~~~L~i~V~d~~~~-~d~~ 116 (768)
|.|+|++|++|+.. |.+||||+++++++ .++|+++++ .||+|||+|.|.+... ....|.|.+||.+.. ++.+
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~~ 77 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDIV 77 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCeeE
Confidence 78999999999875 78999999999985 479999988 9999999999998653 346788889998876 6777
Q ss_pred eEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCC-CccceEEEEEEEE
Q 004208 117 IGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDG-SRARGELMFAIWF 162 (768)
Q Consensus 117 lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~-~~~~G~i~l~i~~ 162 (768)
+|++.++.... + .....|++|.+..+ ....|+|++.++|
T Consensus 78 ~g~v~l~~~~~--~-----~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 117 (117)
T cd08383 78 IGKVALSKLDL--G-----QGKDEWFPLTPVDPDSEVQGSVRLRARY 117 (117)
T ss_pred EEEEEecCcCC--C-----CcceeEEECccCCCCCCcCceEEEEEEC
Confidence 77766654433 3 22579999987654 3467999998865
No 162
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.59 E-value=1.3e-14 Score=134.26 Aligned_cols=90 Identities=26% Similarity=0.406 Sum_probs=78.2
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEE--CC---eEEeeecccCCCCCCcccceEEEEecCC--CCCcEEEEEEecc
Q 004208 200 WYLRVNVIEAQDLVPKQRNRNPEVFIKAIF--GN---VVLKTTVSAKKTVNPTWNEDLMFVAAEP--FDDPLILTVEDKL 272 (768)
Q Consensus 200 ~~L~V~v~~a~~L~~~d~~~~~dpyV~v~l--g~---~~~~T~~i~~~t~nP~wne~f~f~~~~~--~~~~L~i~V~d~d 272 (768)
+.|.|+|++|+||+..+..+.+||||++.+ ++ ...+|+++++ +.||.|||+|.|.+... .+..|.|+|||++
T Consensus 15 ~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~-t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~~ 93 (136)
T cd08405 15 NRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKR-TLNPVFNESFIFNIPLERLRETTLIITVMDKD 93 (136)
T ss_pred CeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeC-CCCCcccceEEEeCCHHHhCCCEEEEEEEECC
Confidence 469999999999999888899999999998 32 3568998887 99999999999987532 3457999999999
Q ss_pred CCCCCceeEEEEEecccc
Q 004208 273 GDNKEECLGRLVLPLSKA 290 (768)
Q Consensus 273 ~~~~d~~lG~~~i~l~~l 290 (768)
..+++++||++.+++.+.
T Consensus 94 ~~~~~~~lG~~~i~~~~~ 111 (136)
T cd08405 94 RLSRNDLIGKIYLGWKSG 111 (136)
T ss_pred CCCCCcEeEEEEECCccC
Confidence 988999999999999875
No 163
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=4.8e-16 Score=153.96 Aligned_cols=227 Identities=18% Similarity=0.262 Sum_probs=174.4
Q ss_pred CCCcccccccccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeEeeeecCCCCCeeeeEEEEEe--c-
Q 004208 24 GRERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGN-----YKGTTIPFEKKLNPEWNQVFAFTK--E- 95 (768)
Q Consensus 24 ~~~~~~~~~~~~~~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~Wne~f~f~~--~- 95 (768)
|...+..-|+-.. ..+..+|..|++|..++.++..|||++..++. .+.+|++..+++||+|||+-...- .
T Consensus 80 g~~~~~~~y~~~~--~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~ 157 (362)
T KOG1013|consen 80 GALEFELLYDSES--RMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDD 157 (362)
T ss_pred cchhhhhhhhhhh--hhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccc
Confidence 4566777788654 57899999999999999999999999999975 357889999999999999877762 2
Q ss_pred cCCCceEEEEEEEcCCC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCC------CccceEEEEEEEEcccCCc
Q 004208 96 RLQAISVELLVKDKMIV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDG------SRARGELMFAIWFGTQADE 168 (768)
Q Consensus 96 ~~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~------~~~~G~i~l~i~~~~~~d~ 168 (768)
+.....+++.|.|.+.+ .++++|+..+++..+..... .....|+.-..+.+ -+.+|+|.+++.|.+..
T Consensus 158 ~~~~K~~Rk~vcdn~~~~~~~sqGq~r~~lkKl~p~q~---k~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~s~~-- 232 (362)
T KOG1013|consen 158 DTHLKVLRKVVCDNDKKTHNESQGQSRVSLKKLKPLQR---KSFNICLEKSLPSERADRDEDEERGAILISLAYSSTT-- 232 (362)
T ss_pred hhhhhhhheeeccCcccccccCcccchhhhhccChhhc---chhhhhhhccCCcccccccchhhccceeeeeccCcCC--
Confidence 22346788889999988 89999999999988865432 12344444333211 13568887777654321
Q ss_pred cccccccccccccccccccccccceeecCCeeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEEeeecccCCC
Q 004208 169 AFSSAWHSDTAVVSGENIMNCRSKVYVSPKLWYLRVNVIEAQDLVPKQRNRNPEVFIKAIFG-----NVVLKTTVSAKKT 243 (768)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~L~V~v~~a~~L~~~d~~~~~dpyV~v~lg-----~~~~~T~~i~~~t 243 (768)
.-+.|++++|.+|..+|.++.+||||..++. ..+.+|++.++ +
T Consensus 233 -------------------------------~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~-t 280 (362)
T KOG1013|consen 233 -------------------------------PGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKK-T 280 (362)
T ss_pred -------------------------------CceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhc-c
Confidence 2388999999999999999999999999983 23567777776 9
Q ss_pred CCCcccceEEEEecCC--CCCcEEEEEEeccCCCCCceeEEEEEeccc
Q 004208 244 VNPTWNEDLMFVAAEP--FDDPLILTVEDKLGDNKEECLGRLVLPLSK 289 (768)
Q Consensus 244 ~nP~wne~f~f~~~~~--~~~~L~i~V~d~d~~~~d~~lG~~~i~l~~ 289 (768)
.||.|++.|.|.+... ....+.|.|||++..+..+++|-+......
T Consensus 281 ~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~~~G~s~d~~GG~~~g~~r 328 (362)
T KOG1013|consen 281 LNPEFDEEFFYDIGPGDLAYKKVALSVGDYDIGKSNDSIGGSMLGGYR 328 (362)
T ss_pred CCccccccccccCCccchhcceEEEeecccCCCcCccCCCcccccccc
Confidence 9999999999987654 345789999999888788899987665543
No 164
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.59 E-value=9.1e-15 Score=132.96 Aligned_cols=105 Identities=29% Similarity=0.448 Sum_probs=90.8
Q ss_pred CCCcccccccccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeEeeeecCCCCCeeeeEEEEE-e--c
Q 004208 24 GRERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGN-----YKGTTIPFEKKLNPEWNQVFAFT-K--E 95 (768)
Q Consensus 24 ~~~~~~~~~~~~~~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~Wne~f~f~-~--~ 95 (768)
|..++++.||-. .+.|.|+|++|++|+..+..+.+||||++.+.+ .+.+|++++++.||+|||+|.|. + .
T Consensus 2 G~~~~~l~y~~~--~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~ 79 (123)
T cd04035 2 GTLEFTLLYDPA--NSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEE 79 (123)
T ss_pred cEEEEEEEEeCC--CCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHH
Confidence 457888999964 578999999999999988889999999999842 46899999999999999999996 3 2
Q ss_pred cCCCceEEEEEEEcCCCCCceeEEEEEcCCCCCCC
Q 004208 96 RLQAISVELLVKDKMIVNGDFIGKIKIDMPDIPKR 130 (768)
Q Consensus 96 ~~~~~~L~i~V~d~~~~~d~~lG~~~i~l~~l~~~ 130 (768)
+.....|.|+|||++..++++||++.+++.++..+
T Consensus 80 ~~~~~~l~~~v~d~~~~~~~~iG~~~i~l~~l~~~ 114 (123)
T cd04035 80 DIQRKTLRLLVLDEDRFGNDFLGETRIPLKKLKPN 114 (123)
T ss_pred HhCCCEEEEEEEEcCCcCCeeEEEEEEEcccCCCC
Confidence 34457899999999877889999999999999866
No 165
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.59 E-value=1.2e-14 Score=130.61 Aligned_cols=112 Identities=29% Similarity=0.443 Sum_probs=95.3
Q ss_pred EEEEEEEecCCCCCCCCCCCCCcCcEEEEEecC-eeeeeccccCCCCCccccEEEEEEeC-CCcEEEEEEEeCCCCCCCC
Q 004208 363 LELGILSAKELLPMKSRDGRGTTDAYCVAKYAN-KWVRTRTVVDSFDPKWNEQYTWEVYD-PYTVITLVVFDNCHLHPGG 440 (768)
Q Consensus 363 l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~-~~~~T~~~~~t~nP~wne~~~~~v~~-~~~~l~v~v~d~~~~~~~~ 440 (768)
|+|.|++|+||+.. +..+.+||||++.+++ +.++|+++.++.||.|||.|.|.+.+ ..+.+.|+|||++.++
T Consensus 1 l~v~vi~a~~L~~~---~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~--- 74 (115)
T cd04040 1 LTVDVISAENLPSA---DRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGG--- 74 (115)
T ss_pred CEEEEEeeeCCCCC---CCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCC---
Confidence 57899999999985 5678899999999965 55899999999999999999999987 4678999999999854
Q ss_pred CCCCceEEEEEeccccccCceeeeeEeeeecCCCCcccccEEEE
Q 004208 441 AKDSRIGKVRIRLSTLETDRIYTHSYPLVALLPNGVKKMGEVQL 484 (768)
Q Consensus 441 ~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l 484 (768)
++++||++.+++.++..+.....|++|... |..+.|.+.|
T Consensus 75 -~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~---g~~~~~~~~~ 114 (115)
T cd04040 75 -KDDLLGSAYIDLSDLEPEETTELTLPLDGQ---GGGKLGAVFL 114 (115)
T ss_pred -CCCceEEEEEEHHHcCCCCcEEEEEECcCC---CCccCceEEc
Confidence 899999999999999998888899999643 4445576653
No 166
>PLN03008 Phospholipase D delta
Probab=99.59 E-value=8.6e-15 Score=164.57 Aligned_cols=105 Identities=19% Similarity=0.345 Sum_probs=93.5
Q ss_pred CCCcCcEEEEEecCe-eeeeccccCCCCCccccEEEEEEeCCCcEEEEEEEeCCCCCCCCCCCCceEEEEEeccccccCc
Q 004208 382 RGTTDAYCVAKYANK-WVRTRTVVDSFDPKWNEQYTWEVYDPYTVITLVVFDNCHLHPGGAKDSRIGKVRIRLSTLETDR 460 (768)
Q Consensus 382 ~g~~dpyv~v~~g~~-~~~T~~~~~t~nP~wne~~~~~v~~~~~~l~v~v~d~~~~~~~~~~d~~lG~~~i~l~~l~~~~ 460 (768)
.+++||||+|.+|++ ..||++++++.||+|||+|.|.+.++...|+++|+|+|.++ +++||.+.|||.++..|+
T Consensus 74 ~~tSDPYV~I~Lg~~rv~RTrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~g-----aD~IG~a~IPL~~L~~Ge 148 (868)
T PLN03008 74 VITSDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFG-----AQIIGTAKIPVRDIASGE 148 (868)
T ss_pred cCCCCceEEEEECCcceeeEEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccC-----CceeEEEEEEHHHcCCCC
Confidence 357899999999876 57999999999999999999999998889999999999875 579999999999999999
Q ss_pred eeeeeEeeeecCCCCcccccEEEEEEEEEec
Q 004208 461 IYTHSYPLVALLPNGVKKMGEVQLAVRFTCS 491 (768)
Q Consensus 461 ~~~~~~~L~~~~~~g~~~~G~i~l~~~~~~~ 491 (768)
..+.|++|.....+-.+..|+|++++.|.+.
T Consensus 149 ~vd~Wl~Ll~~~~kp~k~~~kl~v~lqf~pv 179 (868)
T PLN03008 149 RISGWFPVLGASGKPPKAETAIFIDMKFTPF 179 (868)
T ss_pred ceEEEEEccccCCCCCCCCcEEEEEEEEEEc
Confidence 9999999988765444556899999999865
No 167
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.59 E-value=2.2e-14 Score=130.34 Aligned_cols=116 Identities=22% Similarity=0.319 Sum_probs=94.1
Q ss_pred EEEEEEEEecCCCCCCCCCCCCCcCcEEEEEecCe-eeeeccccCCCCCccccEEEEEEeCCCcEEEEEEEeCCCCCCCC
Q 004208 362 VLELGILSAKELLPMKSRDGRGTTDAYCVAKYANK-WVRTRTVVDSFDPKWNEQYTWEVYDPYTVITLVVFDNCHLHPGG 440 (768)
Q Consensus 362 ~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~~-~~~T~~~~~t~nP~wne~~~~~v~~~~~~l~v~v~d~~~~~~~~ 440 (768)
.|+|+|.+|+ |... +..+.+||||+++++++ ..+|++++++.||.|||.|.|.+. ..+.|.|+|||++.++
T Consensus 3 ~L~V~i~~a~-l~~~---~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~-~~~~l~~~V~d~~~~~--- 74 (125)
T cd04021 3 QLQITVESAK-LKSN---SKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVT-PQSTLEFKVWSHHTLK--- 74 (125)
T ss_pred eEEEEEEeeE-CCCC---CcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeC-CCCEEEEEEEeCCCCC---
Confidence 4899999999 4442 45778999999999887 899999999999999999999985 4578999999999865
Q ss_pred CCCCceEEEEEeccccccCce-----eeeeEeeeecCCCCcccccEEEEEE
Q 004208 441 AKDSRIGKVRIRLSTLETDRI-----YTHSYPLVALLPNGVKKMGEVQLAV 486 (768)
Q Consensus 441 ~~d~~lG~~~i~l~~l~~~~~-----~~~~~~L~~~~~~g~~~~G~i~l~~ 486 (768)
.|++||++.++|+++..+.. +..|+++........+..|+|.+.+
T Consensus 75 -~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 75 -ADVLLGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred -CCcEEEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 89999999999999876421 3458888754421345669988875
No 168
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.58 E-value=3.5e-15 Score=138.08 Aligned_cols=117 Identities=27% Similarity=0.375 Sum_probs=98.3
Q ss_pred CCCcccccccccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeEeeeecCCCCCeeeeEEEEEeccC-
Q 004208 24 GRERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGN-----YKGTTIPFEKKLNPEWNQVFAFTKERL- 97 (768)
Q Consensus 24 ~~~~~~~~~~~~~~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~Wne~f~f~~~~~- 97 (768)
|...+++.|+-. .+.|.|+|++|+||+..+..+.+||||++++.+ .+++|+++.++.||.|||+|.|.+...
T Consensus 1 G~i~~~l~y~~~--~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~ 78 (134)
T cd00276 1 GELLLSLSYLPT--AERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQ 78 (134)
T ss_pred CeEEEEEEeeCC--CCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHH
Confidence 345788888854 478999999999999988888999999999875 256899999999999999999997643
Q ss_pred -CCceEEEEEEEcCCC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCC
Q 004208 98 -QAISVELLVKDKMIV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDG 149 (768)
Q Consensus 98 -~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 149 (768)
....|.|+|||.+.. ++++||++.+++.+ .+ ....+|++|....+
T Consensus 79 l~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~--~~-----~~~~~W~~l~~~~~ 125 (134)
T cd00276 79 LEEVSLVITVVDKDSVGRNEVIGQVVLGPDS--GG-----EELEHWNEMLASPR 125 (134)
T ss_pred hCCcEEEEEEEecCCCCCCceeEEEEECCCC--CC-----cHHHHHHHHHhCCC
Confidence 367899999999987 99999999999998 22 12578999887654
No 169
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.58 E-value=1.2e-14 Score=134.01 Aligned_cols=106 Identities=25% Similarity=0.357 Sum_probs=91.9
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEC----CeEEeeecccCCCCCCcccceEEEEecCC---------------CCC
Q 004208 202 LRVNVIEAQDLVPKQRNRNPEVFIKAIFG----NVVLKTTVSAKKTVNPTWNEDLMFVAAEP---------------FDD 262 (768)
Q Consensus 202 L~V~v~~a~~L~~~d~~~~~dpyV~v~lg----~~~~~T~~i~~~t~nP~wne~f~f~~~~~---------------~~~ 262 (768)
|+|.|++|++|+.+ ..+.+||||+++++ ++.++|+++++ +.||.|||+|.|.+... ...
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~-t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~ 78 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKK-TNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKS 78 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeC-CCCCCcceEEEEEcccccccccccccccccccccc
Confidence 57899999999988 77899999999997 78899999997 99999999999998765 355
Q ss_pred cEEEEEEeccCCCCCceeEEEEEeccccccccCCCCCCceeEEcccCccCc
Q 004208 263 PLILTVEDKLGDNKEECLGRLVLPLSKAGKRFLPLPAAAIWYNLERNIANG 313 (768)
Q Consensus 263 ~L~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~g 313 (768)
.|.|+|||++..+++++||++.+++.++.. ......||+|++.+..+
T Consensus 79 ~l~i~V~d~~~~~~~~~IG~~~i~l~~l~~----~~~~~~W~~L~~~~~~~ 125 (137)
T cd08675 79 ELRVELWHASMVSGDDFLGEVRIPLQGLQQ----AGSHQAWYFLQPREAPG 125 (137)
T ss_pred EEEEEEEcCCcCcCCcEEEEEEEehhhccC----CCcccceEecCCcCCCC
Confidence 899999999988889999999999999873 24578999999885433
No 170
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.58 E-value=2.4e-14 Score=129.06 Aligned_cols=112 Identities=30% Similarity=0.533 Sum_probs=88.6
Q ss_pred EEEEEEEecCCCCCCCCCCCCCcCcEEEEEecCe-eeeeccccCCCCCccccEEEEEEeCC---CcEEEEEEEeCCCCCC
Q 004208 363 LELGILSAKELLPMKSRDGRGTTDAYCVAKYANK-WVRTRTVVDSFDPKWNEQYTWEVYDP---YTVITLVVFDNCHLHP 438 (768)
Q Consensus 363 l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~~-~~~T~~~~~t~nP~wne~~~~~v~~~---~~~l~v~v~d~~~~~~ 438 (768)
|+|.|++|+||+. . |.+||||+++++++ .++|+++++ .||.|||+|.|.+.+. ...|.|.+||.+..+
T Consensus 2 L~v~vi~a~~l~~----~--~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~- 73 (117)
T cd08383 2 LRLRILEAKNLPS----K--GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKD- 73 (117)
T ss_pred eEEEEEEecCCCc----C--CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCC-
Confidence 7899999999986 2 78999999999885 589999988 9999999999999863 357888899987632
Q ss_pred CCCCCCceEEEEEeccccccCceeeeeEeeeecCCCCcccccEEEEEEEE
Q 004208 439 GGAKDSRIGKVRIRLSTLETDRIYTHSYPLVALLPNGVKKMGEVQLAVRF 488 (768)
Q Consensus 439 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 488 (768)
++..+|++.|. .+..+.....||+|...+. +.+..|+|+|+++|
T Consensus 74 ---~~~~~g~v~l~--~~~~~~~~~~w~~L~~~~~-~~~~~G~l~l~~~~ 117 (117)
T cd08383 74 ---RDIVIGKVALS--KLDLGQGKDEWFPLTPVDP-DSEVQGSVRLRARY 117 (117)
T ss_pred ---CeeEEEEEEec--CcCCCCcceeEEECccCCC-CCCcCceEEEEEEC
Confidence 56666665554 4455666789999976544 34467999999875
No 171
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.58 E-value=1.9e-14 Score=132.80 Aligned_cols=104 Identities=22% Similarity=0.377 Sum_probs=83.8
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEE--CC---eEEeeecccCCCCCCcccceEEEEecCC--CCCcEEEEEEecc
Q 004208 200 WYLRVNVIEAQDLVPKQRNRNPEVFIKAIF--GN---VVLKTTVSAKKTVNPTWNEDLMFVAAEP--FDDPLILTVEDKL 272 (768)
Q Consensus 200 ~~L~V~v~~a~~L~~~d~~~~~dpyV~v~l--g~---~~~~T~~i~~~t~nP~wne~f~f~~~~~--~~~~L~i~V~d~d 272 (768)
+.|.|+|++|++|+..|..+.+||||++.+ +. +..+|+++++ +.||.|||+|.|.+... ....|.|+|||+|
T Consensus 14 ~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~-t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d~d 92 (135)
T cd08410 14 GRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRG-TIDPFYNESFSFKVPQEELENVSLVFTVYGHN 92 (135)
T ss_pred CeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccC-CCCCccceeEEEeCCHHHhCCCEEEEEEEeCC
Confidence 569999999999999998899999999998 22 3568888887 99999999999998543 2346999999999
Q ss_pred CCCCCceeEEEEEeccccccccCCCCCCceeEEcccC
Q 004208 273 GDNKEECLGRLVLPLSKAGKRFLPLPAAAIWYNLERN 309 (768)
Q Consensus 273 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~~ 309 (768)
..+++++||++.++..... .....+|+.+...
T Consensus 93 ~~~~~~~iG~~~l~~~~~~-----~~~~~~W~~l~~~ 124 (135)
T cd08410 93 VKSSNDFIGRIVIGQYSSG-----PSETNHWRRMLNS 124 (135)
T ss_pred CCCCCcEEEEEEEcCccCC-----chHHHHHHHHHhC
Confidence 9899999999987654332 1224677777665
No 172
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.57 E-value=1.4e-14 Score=128.75 Aligned_cols=101 Identities=23% Similarity=0.378 Sum_probs=86.2
Q ss_pred CCCCCCcEEEEEECCe-eeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcCCCCCceeEEEEEcCCCCCCCCCCC
Q 004208 56 VTGTCDPYVEVKIGNY-KGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIVNGDFIGKIKIDMPDIPKRVPPD 134 (768)
Q Consensus 56 ~~g~~dPyv~v~~~~~-~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~~~d~~lG~~~i~l~~l~~~~~~~ 134 (768)
.+|.+||||+++++++ ..+|++++++.||+|||+|.|.+.+.....|.|+|||.+..+|++||++.++|.++....
T Consensus 9 ~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~d~~iG~~~v~L~~l~~~~--- 85 (111)
T cd04052 9 KTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDRHDPVLGSVSISLNDLIDAT--- 85 (111)
T ss_pred cCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCCCCCeEEEEEecHHHHHhhh---
Confidence 4788999999999985 579999999999999999999998776788999999999888999999999999985432
Q ss_pred CCCCCeEEEcccCCCCccceEEEEEEEEcc
Q 004208 135 SPLAPEWKRLEAKDGSRARGELMFAIWFGT 164 (768)
Q Consensus 135 ~~~~~~w~~L~~~~~~~~~G~i~l~i~~~~ 164 (768)
....+|++|.+. ..|+|++++.|.+
T Consensus 86 -~~~~~w~~L~~~----~~G~i~~~~~~~p 110 (111)
T cd04052 86 -SVGQQWFPLSGN----GQGRIRISALWKP 110 (111)
T ss_pred -hccceeEECCCC----CCCEEEEEEEEec
Confidence 125799999862 4599999988754
No 173
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.57 E-value=2.4e-14 Score=131.87 Aligned_cols=92 Identities=27% Similarity=0.340 Sum_probs=81.5
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-------CeEEeeecccCCCCCCcccceEEEEecCC----CCCcEEEEE
Q 004208 200 WYLRVNVIEAQDLVPKQRNRNPEVFIKAIFG-------NVVLKTTVSAKKTVNPTWNEDLMFVAAEP----FDDPLILTV 268 (768)
Q Consensus 200 ~~L~V~v~~a~~L~~~d~~~~~dpyV~v~lg-------~~~~~T~~i~~~t~nP~wne~f~f~~~~~----~~~~L~i~V 268 (768)
..|+|+|++|++|+..+..+.+||||++++. ...++|+++++ +.||+|||+|.|.+... ....|.|+|
T Consensus 16 ~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~-t~nP~wnE~f~f~i~~~~~~~~~~~l~~~V 94 (133)
T cd04009 16 QSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKK-TLFPLFDESFEFNVPPEQCSVEGALLLFTV 94 (133)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcC-CCCCccCCEEEEEechhhcccCCCEEEEEE
Confidence 3699999999999999888999999999994 35789999987 99999999999998653 345799999
Q ss_pred EeccCCCCCceeEEEEEecccccc
Q 004208 269 EDKLGDNKEECLGRLVLPLSKAGK 292 (768)
Q Consensus 269 ~d~d~~~~d~~lG~~~i~l~~l~~ 292 (768)
||++..+++++||++.++|+++..
T Consensus 95 ~d~d~~~~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 95 KDYDLLGSNDFEGEAFLPLNDIPG 118 (133)
T ss_pred EecCCCCCCcEeEEEEEeHHHCCc
Confidence 999998889999999999999873
No 174
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.57 E-value=1.8e-14 Score=134.15 Aligned_cols=102 Identities=28% Similarity=0.471 Sum_probs=88.3
Q ss_pred ecCCeeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----------------------------eEEeeecccCCCCC
Q 004208 195 VSPKLWYLRVNVIEAQDLVPKQRNRNPEVFIKAIFGN-----------------------------VVLKTTVSAKKTVN 245 (768)
Q Consensus 195 ~~p~~~~L~V~v~~a~~L~~~d~~~~~dpyV~v~lg~-----------------------------~~~~T~~i~~~t~n 245 (768)
..|..+.|.|+|++|+||..+|..|.+||||++.++. +.++|+++.+ +.|
T Consensus 23 ~~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~-tln 101 (153)
T cd08676 23 AEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQ-TLN 101 (153)
T ss_pred cCCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecC-CCC
Confidence 3467889999999999999999999999999999853 2368888887 999
Q ss_pred CcccceEEEEecCCCCCcEEEEEEeccCCCCCceeEEEEEeccccccccCCCCCCceeEEc
Q 004208 246 PTWNEDLMFVAAEPFDDPLILTVEDKLGDNKEECLGRLVLPLSKAGKRFLPLPAAAIWYNL 306 (768)
Q Consensus 246 P~wne~f~f~~~~~~~~~L~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L 306 (768)
|.|||+|.|.+.......|.|+|||++ +++||++.++++++.. ...++||+|
T Consensus 102 P~WnE~F~f~v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~~-----~~~d~W~~L 153 (153)
T cd08676 102 PVWNETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLPS-----CGLDSWFKL 153 (153)
T ss_pred CccccEEEEEeccCCCCEEEEEEEecC----CCeEEEEEEEHHHhCC-----CCCCCeEeC
Confidence 999999999997766778999999986 7899999999999872 236899986
No 175
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.57 E-value=3.3e-14 Score=131.61 Aligned_cols=103 Identities=26% Similarity=0.301 Sum_probs=85.8
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---eEEeeecccCCCCCCcccceEEEEecCC--CCCcEEEEEEecc
Q 004208 200 WYLRVNVIEAQDLVPKQRNRNPEVFIKAIFG--N---VVLKTTVSAKKTVNPTWNEDLMFVAAEP--FDDPLILTVEDKL 272 (768)
Q Consensus 200 ~~L~V~v~~a~~L~~~d~~~~~dpyV~v~lg--~---~~~~T~~i~~~t~nP~wne~f~f~~~~~--~~~~L~i~V~d~d 272 (768)
+.|.|+|++|++|+..|..+.+||||++.+. + .+.+|+++++ +.||.|||+|.|.+... ....|.|+|||++
T Consensus 15 ~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~-t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~d 93 (136)
T cd08404 15 NRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKC-TLNPVFNESFVFDIPSEELEDISVEFLVLDSD 93 (136)
T ss_pred CeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccC-CCCCccCceEEEECCHHHhCCCEEEEEEEECC
Confidence 3599999999999999989999999999983 2 2568888887 99999999999998643 3446889999999
Q ss_pred CCCCCceeEEEEEeccccccccCCCCCCceeEEcccC
Q 004208 273 GDNKEECLGRLVLPLSKAGKRFLPLPAAAIWYNLERN 309 (768)
Q Consensus 273 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~~ 309 (768)
..+++++||++.+++.... ....+|++|...
T Consensus 94 ~~~~~~~iG~~~~~~~~~~------~~~~~w~~l~~~ 124 (136)
T cd08404 94 RVTKNEVIGRLVLGPKASG------SGGHHWKEVCNP 124 (136)
T ss_pred CCCCCccEEEEEECCcCCC------chHHHHHHHHhC
Confidence 9999999999999998722 246788887654
No 176
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.57 E-value=4e-14 Score=129.86 Aligned_cols=116 Identities=23% Similarity=0.320 Sum_probs=97.5
Q ss_pred cEEEEEEEEeecCCCCC--CCCCCCcEEEEEEC------CeeeEeeeecCCC-CCeeeeEEEEEeccCCCceEEEEEEEc
Q 004208 39 EFLYVRIVRARDLQVNQ--VTGTCDPYVEVKIG------NYKGTTIPFEKKL-NPEWNQVFAFTKERLQAISVELLVKDK 109 (768)
Q Consensus 39 ~~L~V~i~~a~~L~~~d--~~g~~dPyv~v~~~------~~~~~T~~~~~t~-nP~Wne~f~f~~~~~~~~~L~i~V~d~ 109 (768)
..|+|+|++|+||+..+ ..+.+||||++++. ..+.+|+++.++. ||+|||+|.|.+.......|.|+|||.
T Consensus 2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~ 81 (128)
T cd00275 2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDE 81 (128)
T ss_pred eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeC
Confidence 36999999999999887 57889999999994 3567999887775 999999999998766567899999999
Q ss_pred CCCCCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCCC-ccceEEEEEEEE
Q 004208 110 MIVNGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGS-RARGELMFAIWF 162 (768)
Q Consensus 110 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~-~~~G~i~l~i~~ 162 (768)
+..++++||++.+++.++..+ ..|++|.+..+. ...|.|.+.+++
T Consensus 82 ~~~~~~~iG~~~~~l~~l~~g--------~~~~~l~~~~~~~~~~~~l~v~~~~ 127 (128)
T cd00275 82 DSGDDDFLGQACLPLDSLRQG--------YRHVPLLDSKGEPLELSTLFVHIDI 127 (128)
T ss_pred CCCCCcEeEEEEEEhHHhcCc--------eEEEEecCCCCCCCcceeEEEEEEE
Confidence 987899999999999998543 578999887664 356899888764
No 177
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.56 E-value=4e-14 Score=127.50 Aligned_cols=105 Identities=17% Similarity=0.194 Sum_probs=82.2
Q ss_pred CCeeeEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEe--cC---eeeeeccccCCC-CCccccEEEEEEeCC--CcEEEE
Q 004208 357 PPVIGVLELGILSAKELLPMKSRDGRGTTDAYCVAKY--AN---KWVRTRTVVDSF-DPKWNEQYTWEVYDP--YTVITL 428 (768)
Q Consensus 357 ~~~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~--g~---~~~~T~~~~~t~-nP~wne~~~~~v~~~--~~~l~v 428 (768)
.|..|.|.|.|++|+||+++ +..+.+||||+|++ ++ .+.||+++++|+ ||.|||.|.|+|... ...|.|
T Consensus 10 ~p~~~rLtV~VikarnL~~~---~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v 86 (135)
T cd08692 10 QAVNSRIQLQILEAQNLPSS---STPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLI 86 (135)
T ss_pred cCcCCeEEEEEEEccCCCcc---cCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEE
Confidence 46778899999999999986 34456799999988 22 358999999996 699999999999853 337999
Q ss_pred EEEeCCCCCCCCCCCCceEEEEEeccccccCceeeeeEeee
Q 004208 429 VVFDNCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPLV 469 (768)
Q Consensus 429 ~v~d~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 469 (768)
+|||++..+ ++++||++.++.+.... ....+|..+.
T Consensus 87 ~v~d~~~~~----~n~~IG~v~lG~~~~~~-~~~~hW~~m~ 122 (135)
T cd08692 87 KLYSRSSVR----RKHFLGQVWISSDSSSS-EAVEQWKDTI 122 (135)
T ss_pred EEEeCCCCc----CCceEEEEEECCccCCc-hhhhhHHHHH
Confidence 999998755 89999999999976432 2234565554
No 178
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.56 E-value=3.6e-14 Score=131.00 Aligned_cols=104 Identities=24% Similarity=0.301 Sum_probs=83.8
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---eEEeeecccCCCCCCcccceEEEEecCC--CCCcEEEEEEec
Q 004208 199 LWYLRVNVIEAQDLVPKQRNRNPEVFIKAIFG--N---VVLKTTVSAKKTVNPTWNEDLMFVAAEP--FDDPLILTVEDK 271 (768)
Q Consensus 199 ~~~L~V~v~~a~~L~~~d~~~~~dpyV~v~lg--~---~~~~T~~i~~~t~nP~wne~f~f~~~~~--~~~~L~i~V~d~ 271 (768)
.+.|+|+|++|++|+..+..+.+||||++.+. + ...+|+++++ +.||.|||+|.|.+... ....|.|+|||+
T Consensus 13 ~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~i~~~~~~~~~l~~~v~d~ 91 (134)
T cd08403 13 AGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKN-TLNPTYNEALVFDVPPENVDNVSLIIAVVDY 91 (134)
T ss_pred CCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccC-CCCCcccceEEEECCHHHhCCCEEEEEEEEC
Confidence 35799999999999999999999999999983 2 3568888776 99999999999987543 234699999999
Q ss_pred cCCCCCceeEEEEEeccccccccCCCCCCceeEEcccC
Q 004208 272 LGDNKEECLGRLVLPLSKAGKRFLPLPAAAIWYNLERN 309 (768)
Q Consensus 272 d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~~ 309 (768)
+..+++++||++.+++.... .....|+++...
T Consensus 92 ~~~~~~~~IG~~~l~~~~~~------~~~~~w~~~~~~ 123 (134)
T cd08403 92 DRVGHNELIGVCRVGPNADG------QGREHWNEMLAN 123 (134)
T ss_pred CCCCCCceeEEEEECCCCCC------chHHHHHHHHHC
Confidence 99999999999999876322 234567766544
No 179
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.56 E-value=2.6e-14 Score=131.75 Aligned_cols=104 Identities=21% Similarity=0.365 Sum_probs=84.8
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---C---eEEeeecccCCCCCCcccceEEEEecCC--CCCcEEEEEEec
Q 004208 200 WYLRVNVIEAQDLVPKQRNRNPEVFIKAIFG---N---VVLKTTVSAKKTVNPTWNEDLMFVAAEP--FDDPLILTVEDK 271 (768)
Q Consensus 200 ~~L~V~v~~a~~L~~~d~~~~~dpyV~v~lg---~---~~~~T~~i~~~t~nP~wne~f~f~~~~~--~~~~L~i~V~d~ 271 (768)
+.|.|+|++|+||+..+..+.+||||++.+. + .+.+|++.++ +.||+|||+|.|.+... ....|.|+|||+
T Consensus 15 ~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~-t~nPvfnEtF~f~i~~~~l~~~~L~~~V~~~ 93 (138)
T cd08408 15 GRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRG-QPDPEFKETFVFQVALFQLSEVTLMFSVYNK 93 (138)
T ss_pred CeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecC-CCCCcEeeeEEEECCHHHhCccEEEEEEEEC
Confidence 4699999999999999988999999999993 2 2568998886 99999999999998643 456899999999
Q ss_pred cCCCCCceeEEEEEeccccccccCCCCCCceeEEcccC
Q 004208 272 LGDNKEECLGRLVLPLSKAGKRFLPLPAAAIWYNLERN 309 (768)
Q Consensus 272 d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~~ 309 (768)
+..+++++||++.+++..... ....+|+.+...
T Consensus 94 ~~~~~~~~iG~v~l~~~~~~~-----~~~~hW~~~l~~ 126 (138)
T cd08408 94 RKMKRKEMIGWFSLGLNSSGE-----EEEEHWNEMKES 126 (138)
T ss_pred CCCCCCcEEEEEEECCcCCCc-----hHHHHHHHHHhC
Confidence 999999999999998875431 123566665443
No 180
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.56 E-value=5.2e-14 Score=129.30 Aligned_cols=115 Identities=16% Similarity=0.271 Sum_probs=95.5
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCee-eEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcCCC-----
Q 004208 39 EFLYVRIVRARDLQVNQVTGTCDPYVEVKIGNYK-GTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIV----- 112 (768)
Q Consensus 39 ~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~~~-~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~~----- 112 (768)
..|.|.|++|++|+.++ +|||++.+++++ .||+++.++.||.|||.|.|..... ...|+|.||+.+..
T Consensus 11 ~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~-~~~l~v~v~k~~~~~~~~~ 84 (146)
T cd04013 11 NSLKLWIIEAKGLPPKK-----RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPP-VSVITVNLYRESDKKKKKD 84 (146)
T ss_pred EEEEEEEEEccCCCCcC-----CceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCc-ccEEEEEEEEccCcccccc
Confidence 57999999999999876 899999999976 6999999999999999999975443 46799999866532
Q ss_pred CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCCC---------ccceEEEEEEEEcc
Q 004208 113 NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGS---------RARGELMFAIWFGT 164 (768)
Q Consensus 113 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~---------~~~G~i~l~i~~~~ 164 (768)
++++||++.|++.++..+. ....||+|.+..+. ...+.|++++.|.+
T Consensus 85 ~~~~IG~V~Ip~~~l~~~~-----~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~ 140 (146)
T cd04013 85 KSQLIGTVNIPVTDVSSRQ-----FVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQS 140 (146)
T ss_pred CCcEEEEEEEEHHHhcCCC-----cccEEEEeecCCCCCccccccccCCCCEEEEEEEEEE
Confidence 5799999999999998653 36899999987654 23478889888864
No 181
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.56 E-value=4.3e-14 Score=130.58 Aligned_cols=103 Identities=24% Similarity=0.276 Sum_probs=81.7
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEeeecccCCCCCCcccceEEEEecCC--CCCcEEEEEEecc
Q 004208 200 WYLRVNVIEAQDLVPKQRNRNPEVFIKAIFGN-----VVLKTTVSAKKTVNPTWNEDLMFVAAEP--FDDPLILTVEDKL 272 (768)
Q Consensus 200 ~~L~V~v~~a~~L~~~d~~~~~dpyV~v~lg~-----~~~~T~~i~~~t~nP~wne~f~f~~~~~--~~~~L~i~V~d~d 272 (768)
+.|.|+|++|+||+..+ .+.+||||++.+.. .+.+|+++++ +.||.|||+|.|.+... ....|.|+|||.+
T Consensus 15 ~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~-~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~ 92 (137)
T cd08409 15 NRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDG-AASPSFNESFSFKVTSRQLDTASLSLSVMQSG 92 (137)
T ss_pred CeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeC-CCCCcccceEEEECCHHHhCccEEEEEEEeCC
Confidence 46999999999999988 78899999999832 3568888876 99999999999998543 3468999999999
Q ss_pred CCCCCceeEEEEEeccccccccCCCCCCceeEEccc
Q 004208 273 GDNKEECLGRLVLPLSKAGKRFLPLPAAAIWYNLER 308 (768)
Q Consensus 273 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~ 308 (768)
..+++++||++.++...... +....+|..+..
T Consensus 93 ~~~~~~~lG~v~ig~~~~~~----~~~~~hW~~~~~ 124 (137)
T cd08409 93 GVRKSKLLGRVVLGPFMYAR----GKELEHWNDMLS 124 (137)
T ss_pred CCCCcceEEEEEECCcccCC----ChHHHHHHHHHh
Confidence 88899999999998654321 123455655544
No 182
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.56 E-value=6.3e-14 Score=128.34 Aligned_cols=117 Identities=21% Similarity=0.236 Sum_probs=91.4
Q ss_pred EEEEEEEecCCCCCCCCCCCCCcCcEEEEEecC-------------eeeeeccccCCCCCcc-ccEEEEEEeCCCcEEEE
Q 004208 363 LELGILSAKELLPMKSRDGRGTTDAYCVAKYAN-------------KWVRTRTVVDSFDPKW-NEQYTWEVYDPYTVITL 428 (768)
Q Consensus 363 l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~-------------~~~~T~~~~~t~nP~w-ne~~~~~v~~~~~~l~v 428 (768)
..|.+++|+||+. +..|++||||++++.+ +.+||+++++++||.| ||.|.|.+. +++.|.|
T Consensus 3 ~~~~~~~A~~L~~----~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~-~~~~L~v 77 (137)
T cd08691 3 FSLSGLQARNLKK----GMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGL-PTDVLEI 77 (137)
T ss_pred EEEEEEEeCCCCC----ccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcC-CCCEEEE
Confidence 6789999999973 5678999999999942 3689999999999999 999999985 4568999
Q ss_pred EEEeCCCCCCCCCCCCceEEEEEeccccccCc---eeeeeEeeeecCCCCcccccEEEEEE
Q 004208 429 VVFDNCHLHPGGAKDSRIGKVRIRLSTLETDR---IYTHSYPLVALLPNGVKKMGEVQLAV 486 (768)
Q Consensus 429 ~v~d~~~~~~~~~~d~~lG~~~i~l~~l~~~~---~~~~~~~L~~~~~~g~~~~G~i~l~~ 486 (768)
+|||++..+ ....|++||++.|+++++.++. ....||+|.... ......|+|.|.+
T Consensus 78 ~V~D~~~~~-~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~-~~s~v~G~~~l~~ 136 (137)
T cd08691 78 EVKDKFAKS-RPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRT-PTDHVSGQLTFRF 136 (137)
T ss_pred EEEecCCCC-CccCCceEEEEEEEHHHhcccccCCceEEEEECCcCC-CCCcEEEEEEEEe
Confidence 999986522 0012799999999999998652 356789886433 2344568888765
No 183
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.56 E-value=4.5e-14 Score=129.92 Aligned_cols=104 Identities=29% Similarity=0.386 Sum_probs=91.0
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEEeeecccCCCCCCcccceEEEEecCC-CCCcEEEEEEeccCC
Q 004208 201 YLRVNVIEAQDLVPKQRNRNPEVFIKAIFG-----NVVLKTTVSAKKTVNPTWNEDLMFVAAEP-FDDPLILTVEDKLGD 274 (768)
Q Consensus 201 ~L~V~v~~a~~L~~~d~~~~~dpyV~v~lg-----~~~~~T~~i~~~t~nP~wne~f~f~~~~~-~~~~L~i~V~d~d~~ 274 (768)
.|+|+|++|++|+..+..+.+||||++.+. .+.++|+++++ +.||.|||+|.|.+... ....|.|+|||++..
T Consensus 14 ~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~-~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~ 92 (131)
T cd04026 14 KLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKK-TLNPVWNETFTFDLKPADKDRRLSIEVWDWDRT 92 (131)
T ss_pred EEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecC-CCCCCccceEEEeCCchhcCCEEEEEEEECCCC
Confidence 599999999999998888899999999995 36789999887 99999999999998754 356899999999988
Q ss_pred CCCceeEEEEEeccccccccCCCCCCceeEEcccCc
Q 004208 275 NKEECLGRLVLPLSKAGKRFLPLPAAAIWYNLERNI 310 (768)
Q Consensus 275 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~ 310 (768)
+++++||++.++++++... ....||+|.+..
T Consensus 93 ~~~~~iG~~~~~l~~l~~~-----~~~~w~~L~~~~ 123 (131)
T cd04026 93 TRNDFMGSLSFGVSELIKM-----PVDGWYKLLNQE 123 (131)
T ss_pred CCcceeEEEEEeHHHhCcC-----ccCceEECcCcc
Confidence 8899999999999998742 578899998763
No 184
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.54 E-value=4.8e-14 Score=130.09 Aligned_cols=106 Identities=25% Similarity=0.358 Sum_probs=88.3
Q ss_pred CCeeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEEeeecccCCCCCCcccceEEEEecCC--CCCcEEEEEE
Q 004208 197 PKLWYLRVNVIEAQDLVPKQRNRNPEVFIKAIFG-----NVVLKTTVSAKKTVNPTWNEDLMFVAAEP--FDDPLILTVE 269 (768)
Q Consensus 197 p~~~~L~V~v~~a~~L~~~d~~~~~dpyV~v~lg-----~~~~~T~~i~~~t~nP~wne~f~f~~~~~--~~~~L~i~V~ 269 (768)
+..+.|.|+|++|++|+..|..+.+||||++.+. ....+|+++++ +.||.|||+|.|.+... ....|.|+||
T Consensus 10 ~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~~~~~~l~~~~l~~~V~ 88 (133)
T cd08384 10 TQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKK-TLNPEFNEEFFYDIKHSDLAKKTLEITVW 88 (133)
T ss_pred CCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEec-cCCCCcccEEEEECCHHHhCCCEEEEEEE
Confidence 3446799999999999999988999999999994 24679999987 99999999999998653 3457999999
Q ss_pred eccCCCCCceeEEEEEeccccccccCCCCCCceeEEcccC
Q 004208 270 DKLGDNKEECLGRLVLPLSKAGKRFLPLPAAAIWYNLERN 309 (768)
Q Consensus 270 d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~~ 309 (768)
|++..+++++||++.+++.... ....+|+++...
T Consensus 89 d~d~~~~~~~lG~~~i~l~~~~------~~~~~W~~~l~~ 122 (133)
T cd08384 89 DKDIGKSNDYIGGLQLGINAKG------ERLRHWLDCLKN 122 (133)
T ss_pred eCCCCCCccEEEEEEEecCCCC------chHHHHHHHHhC
Confidence 9998888999999999997522 235678877654
No 185
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.53 E-value=1.7e-14 Score=133.55 Aligned_cols=104 Identities=21% Similarity=0.354 Sum_probs=88.4
Q ss_pred eeeEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEecCe-----eeeeccccCCCCCccccEEEEEEeCC---CcEEEEEE
Q 004208 359 VIGVLELGILSAKELLPMKSRDGRGTTDAYCVAKYANK-----WVRTRTVVDSFDPKWNEQYTWEVYDP---YTVITLVV 430 (768)
Q Consensus 359 ~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~~-----~~~T~~~~~t~nP~wne~~~~~v~~~---~~~l~v~v 430 (768)
..+.|.|.|++|+||+.. +..+.+||||++++.+. ..+|+++.++.||.|||+|.|.+... ...|.|+|
T Consensus 12 ~~~~L~V~v~~a~~L~~~---~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v 88 (134)
T cd00276 12 TAERLTVVVLKARNLPPS---DGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITV 88 (134)
T ss_pred CCCEEEEEEEEeeCCCCc---cCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEE
Confidence 346799999999999985 56788999999998542 57999999999999999999998764 46899999
Q ss_pred EeCCCCCCCCCCCCceEEEEEeccccccCceeeeeEeeeec
Q 004208 431 FDNCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPLVAL 471 (768)
Q Consensus 431 ~d~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 471 (768)
||.+.++ ++++||.+.+++++ .+...++|++|...
T Consensus 89 ~d~~~~~----~~~~lG~~~i~l~~--~~~~~~~W~~l~~~ 123 (134)
T cd00276 89 VDKDSVG----RNEVIGQVVLGPDS--GGEELEHWNEMLAS 123 (134)
T ss_pred EecCCCC----CCceeEEEEECCCC--CCcHHHHHHHHHhC
Confidence 9998754 88999999999999 45556889998755
No 186
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.53 E-value=3.4e-15 Score=152.14 Aligned_cols=114 Identities=26% Similarity=0.429 Sum_probs=96.4
Q ss_pred cccccccccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeEeeeecCCCCCeeeeEEEEEecc-CCCc
Q 004208 27 RLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGN-----YKGTTIPFEKKLNPEWNQVFAFTKER-LQAI 100 (768)
Q Consensus 27 ~~~~~~~~~~~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~Wne~f~f~~~~-~~~~ 100 (768)
++.+.-.+. ...|.|+|.+|+||.++|.+|.|||||++++-+ .+++|++++.++||+|||+|.|.+.. ....
T Consensus 170 rl~l~~~~~--~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~Dkdr 247 (683)
T KOG0696|consen 170 RLYLEAHIK--RDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDR 247 (683)
T ss_pred eEEEEEEec--CceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccc
Confidence 344443332 368999999999999999999999999999964 46799999999999999999999743 3367
Q ss_pred eEEEEEEEcCCC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCC
Q 004208 101 SVELLVKDKMIV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKD 148 (768)
Q Consensus 101 ~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 148 (768)
.|.|+|||+|+. ++||+|+.++.+++|.... ...||.|-.+.
T Consensus 248 RlsiEvWDWDrTsRNDFMGslSFgisEl~K~p------~~GWyKlLsqe 290 (683)
T KOG0696|consen 248 RLSIEVWDWDRTSRNDFMGSLSFGISELQKAP------VDGWYKLLSQE 290 (683)
T ss_pred eeEEEEecccccccccccceecccHHHHhhcc------hhhHHHHhhhh
Confidence 899999999999 9999999999999998753 57899987664
No 187
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.52 E-value=5.9e-14 Score=126.88 Aligned_cols=97 Identities=21% Similarity=0.256 Sum_probs=82.8
Q ss_pred EEEeecCCCCCCCCCCCcEEEEEECCe-------eeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcCC----C-
Q 004208 45 IVRARDLQVNQVTGTCDPYVEVKIGNY-------KGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMI----V- 112 (768)
Q Consensus 45 i~~a~~L~~~d~~g~~dPyv~v~~~~~-------~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~----~- 112 (768)
.++|++|+..|..|.+||||++++.+. ..+|++++++.||+|||+|.|.+.......|.|+|||++. .
T Consensus 6 ~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~~ 85 (120)
T cd04048 6 SISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDLS 85 (120)
T ss_pred EEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCCC
Confidence 478999999998999999999999874 3899999999999999999998654446789999999996 5
Q ss_pred CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEccc
Q 004208 113 NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEA 146 (768)
Q Consensus 113 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 146 (768)
++++||++.+++.++.... ....|++|.+
T Consensus 86 ~~d~iG~~~i~l~~l~~~~-----~~~~~~~l~~ 114 (120)
T cd04048 86 DHDFLGEAECTLGEIVSSP-----GQKLTLPLKG 114 (120)
T ss_pred CCcEEEEEEEEHHHHhcCC-----CcEEEEEccC
Confidence 9999999999999997652 2457888844
No 188
>PLN03008 Phospholipase D delta
Probab=99.52 E-value=6.3e-14 Score=157.68 Aligned_cols=124 Identities=24% Similarity=0.352 Sum_probs=104.9
Q ss_pred cEEEEEEEEeecCCCCCC------------------------------------------CCCCCcEEEEEECCe-eeEe
Q 004208 39 EFLYVRIVRARDLQVNQV------------------------------------------TGTCDPYVEVKIGNY-KGTT 75 (768)
Q Consensus 39 ~~L~V~i~~a~~L~~~d~------------------------------------------~g~~dPyv~v~~~~~-~~~T 75 (768)
|.|.|+|.+|++|+++|. .++|||||+|.++++ ..||
T Consensus 14 g~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~rv~RT 93 (868)
T PLN03008 14 GDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQATLART 93 (868)
T ss_pred cccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCcceeeE
Confidence 689999999999975221 247899999999886 5699
Q ss_pred eeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcCCCCCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCCC--ccc
Q 004208 76 IPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIVNGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGS--RAR 153 (768)
Q Consensus 76 ~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~--~~~ 153 (768)
++++++.||+|||+|.|.+.+. ...|+|+|||.|.+++++||++.|+|.++..+. ....|++|.+..++ +..
T Consensus 94 rVi~n~~NPvWNE~F~f~vah~-~s~L~f~VkD~D~~gaD~IG~a~IPL~~L~~Ge-----~vd~Wl~Ll~~~~kp~k~~ 167 (868)
T PLN03008 94 RVLKNSQEPLWDEKFNISIAHP-FAYLEFQVKDDDVFGAQIIGTAKIPVRDIASGE-----RISGWFPVLGASGKPPKAE 167 (868)
T ss_pred EeCCCCCCCCcceeEEEEecCC-CceEEEEEEcCCccCCceeEEEEEEHHHcCCCC-----ceEEEEEccccCCCCCCCC
Confidence 9999999999999999999886 569999999999998899999999999998764 25799999887654 245
Q ss_pred eEEEEEEEEcccCCc
Q 004208 154 GELMFAIWFGTQADE 168 (768)
Q Consensus 154 G~i~l~i~~~~~~d~ 168 (768)
|+|.+++.|.+....
T Consensus 168 ~kl~v~lqf~pv~~~ 182 (868)
T PLN03008 168 TAIFIDMKFTPFDQI 182 (868)
T ss_pred cEEEEEEEEEEcccc
Confidence 899999999876543
No 189
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.52 E-value=8.2e-14 Score=123.89 Aligned_cols=100 Identities=23% Similarity=0.350 Sum_probs=84.2
Q ss_pred CCCCCcCcEEEEEecCe-eeeeccccCCCCCccccEEEEEEeCC-CcEEEEEEEeCCCCCCCCCCCCceEEEEEeccccc
Q 004208 380 DGRGTTDAYCVAKYANK-WVRTRTVVDSFDPKWNEQYTWEVYDP-YTVITLVVFDNCHLHPGGAKDSRIGKVRIRLSTLE 457 (768)
Q Consensus 380 ~~~g~~dpyv~v~~g~~-~~~T~~~~~t~nP~wne~~~~~v~~~-~~~l~v~v~d~~~~~~~~~~d~~lG~~~i~l~~l~ 457 (768)
...|.+||||+++++++ ..+|++++++.||.|||.|.|.+.++ .+.|.|.|+|++.+ +|++||++.++|+++.
T Consensus 8 ~~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-----~d~~iG~~~v~L~~l~ 82 (111)
T cd04052 8 SKTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR-----HDPVLGSVSISLNDLI 82 (111)
T ss_pred ccCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC-----CCCeEEEEEecHHHHH
Confidence 34688999999999885 57999999999999999999999875 46899999999874 5899999999999986
Q ss_pred c-CceeeeeEeeeecCCCCcccccEEEEEEEEEe
Q 004208 458 T-DRIYTHSYPLVALLPNGVKKMGEVQLAVRFTC 490 (768)
Q Consensus 458 ~-~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~~ 490 (768)
. +.....||+|.+ +..|+|++++.|.+
T Consensus 83 ~~~~~~~~w~~L~~------~~~G~i~~~~~~~p 110 (111)
T cd04052 83 DATSVGQQWFPLSG------NGQGRIRISALWKP 110 (111)
T ss_pred hhhhccceeEECCC------CCCCEEEEEEEEec
Confidence 4 344578999963 24599999998853
No 190
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.51 E-value=9.2e-14 Score=126.13 Aligned_cols=90 Identities=23% Similarity=0.324 Sum_probs=81.1
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeE--EeeecccCCCCCCcccceEEEEecCCCCCcEEEEEEeccCCCCCc
Q 004208 201 YLRVNVIEAQDLVPKQRNRNPEVFIKAIFGNVV--LKTTVSAKKTVNPTWNEDLMFVAAEPFDDPLILTVEDKLGDNKEE 278 (768)
Q Consensus 201 ~L~V~v~~a~~L~~~d~~~~~dpyV~v~lg~~~--~~T~~i~~~t~nP~wne~f~f~~~~~~~~~L~i~V~d~d~~~~d~ 278 (768)
+|+|.|++|++|+..|..+.+||||++.++++. .+|+++++ +.||.|||+|.|.+..+....|.|+|||++..++++
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~-t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd 79 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPN-TLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDD 79 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEEC-CCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCc
Confidence 379999999999999999999999999998865 46777887 999999999999987777788999999999988999
Q ss_pred eeEEEEEeccccc
Q 004208 279 CLGRLVLPLSKAG 291 (768)
Q Consensus 279 ~lG~~~i~l~~l~ 291 (768)
+||++.+++.+..
T Consensus 80 ~iG~~~i~l~~~~ 92 (124)
T cd04037 80 LIGETVIDLEDRF 92 (124)
T ss_pred eeEEEEEeecccc
Confidence 9999999998765
No 191
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.51 E-value=8e-14 Score=121.87 Aligned_cols=79 Identities=20% Similarity=0.352 Sum_probs=68.3
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEc------
Q 004208 41 LYVRIVRARDLQVNQVTGTCDPYVEVKIGN-----YKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDK------ 109 (768)
Q Consensus 41 L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~------ 109 (768)
|.|+|++|+||+ +.+||||++.+++ .+.+|+++++|+||+|||+|.|.+.. +..|.+.|||+
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~--s~~L~~~v~d~~~~~~~ 73 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG--SQTLRILCYEKCYSKVK 73 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC--CCEEEEEEEEccccccc
Confidence 679999999995 4589999999964 35899999999999999999999974 67999999998
Q ss_pred -CCC-CCceeEEEEEcCCC
Q 004208 110 -MIV-NGDFIGKIKIDMPD 126 (768)
Q Consensus 110 -~~~-~d~~lG~~~i~l~~ 126 (768)
|.. +|+++|++.+.|..
T Consensus 74 ~d~~~~d~~~G~g~i~Ld~ 92 (118)
T cd08686 74 LDGEGTDAIMGKGQIQLDP 92 (118)
T ss_pred ccccCcccEEEEEEEEECH
Confidence 344 89999888888753
No 192
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.50 E-value=3.7e-13 Score=123.44 Aligned_cols=117 Identities=21% Similarity=0.378 Sum_probs=94.1
Q ss_pred EEEEEEEEecCCCCCCCCCCCCCcCcEEEEEe------cCeeeeeccccCCC-CCccccEEEEEEeCCC-cEEEEEEEeC
Q 004208 362 VLELGILSAKELLPMKSRDGRGTTDAYCVAKY------ANKWVRTRTVVDSF-DPKWNEQYTWEVYDPY-TVITLVVFDN 433 (768)
Q Consensus 362 ~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~------g~~~~~T~~~~~t~-nP~wne~~~~~v~~~~-~~l~v~v~d~ 433 (768)
.|+|+|++|+||+.++. +..+.+||||++++ +...+||+++.++. ||.|||+|.|.+..+. ..|.++|||+
T Consensus 3 ~l~v~vi~a~~L~~~~~-~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~ 81 (128)
T cd00275 3 TLTIKIISGQQLPKPKG-DKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDE 81 (128)
T ss_pred EEEEEEEeeecCCCCCC-CCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeC
Confidence 58999999999988521 14678999999999 34568999988776 9999999999998765 4799999999
Q ss_pred CCCCCCCCCCCceEEEEEeccccccCceeeeeEeeeecCCCCcccccEEEEEEEE
Q 004208 434 CHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPLVALLPNGVKKMGEVQLAVRF 488 (768)
Q Consensus 434 ~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 488 (768)
+.. +|++||++.++++++.++. .|++|...... ....|.|.+.+++
T Consensus 82 ~~~-----~~~~iG~~~~~l~~l~~g~---~~~~l~~~~~~-~~~~~~l~v~~~~ 127 (128)
T cd00275 82 DSG-----DDDFLGQACLPLDSLRQGY---RHVPLLDSKGE-PLELSTLFVHIDI 127 (128)
T ss_pred CCC-----CCcEeEEEEEEhHHhcCce---EEEEecCCCCC-CCcceeEEEEEEE
Confidence 862 6889999999999997764 67888765432 2334888888775
No 193
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.50 E-value=1.4e-13 Score=124.43 Aligned_cols=96 Identities=19% Similarity=0.289 Sum_probs=82.8
Q ss_pred EEEecCCCCCCCCCCCCCcCcEEEEEecCe-------eeeeccccCCCCCccccEEEEEEeC-CCcEEEEEEEeCCC---
Q 004208 367 ILSAKELLPMKSRDGRGTTDAYCVAKYANK-------WVRTRTVVDSFDPKWNEQYTWEVYD-PYTVITLVVFDNCH--- 435 (768)
Q Consensus 367 v~~a~~L~~~~~~~~~g~~dpyv~v~~g~~-------~~~T~~~~~t~nP~wne~~~~~v~~-~~~~l~v~v~d~~~--- 435 (768)
.++|++|++. +..|.+||||++++++. .+||++++++.||.|||.|.|.+.. ..+.|.++|||++.
T Consensus 6 ~i~a~~L~~~---d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~ 82 (120)
T cd04048 6 SISCRNLLDK---DVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSK 82 (120)
T ss_pred EEEccCCCCC---CCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcC
Confidence 3899999985 66789999999999664 3999999999999999999998753 55689999999996
Q ss_pred -CCCCCCCCCceEEEEEeccccccCceeeeeEeee
Q 004208 436 -LHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPLV 469 (768)
Q Consensus 436 -~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 469 (768)
++ +|++||++.+++++|..+.....|++|.
T Consensus 83 ~~~----~~d~iG~~~i~l~~l~~~~~~~~~~~l~ 113 (120)
T cd04048 83 DLS----DHDFLGEAECTLGEIVSSPGQKLTLPLK 113 (120)
T ss_pred CCC----CCcEEEEEEEEHHHHhcCCCcEEEEEcc
Confidence 44 8999999999999999877667888883
No 194
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.50 E-value=2.8e-13 Score=123.19 Aligned_cols=98 Identities=27% Similarity=0.397 Sum_probs=81.1
Q ss_pred eeEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEec-----CeeeeeccccCCCCCccccEEEEEEeCC----CcEEEEEE
Q 004208 360 IGVLELGILSAKELLPMKSRDGRGTTDAYCVAKYA-----NKWVRTRTVVDSFDPKWNEQYTWEVYDP----YTVITLVV 430 (768)
Q Consensus 360 ~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g-----~~~~~T~~~~~t~nP~wne~~~~~v~~~----~~~l~v~v 430 (768)
.+.|+|+|++|+||++. +..+.+||||++.+. ....||++++++.||.|||.|.|..... ...+.|+|
T Consensus 14 ~~~L~V~v~~a~~L~~~---~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v 90 (123)
T cd04035 14 NSALHCTIIRAKGLKAM---DANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLV 90 (123)
T ss_pred CCEEEEEEEEeeCCCCC---CCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEE
Confidence 45699999999999885 566789999999883 2468999999999999999999974432 45899999
Q ss_pred EeCCCCCCCCCCCCceEEEEEeccccccCceeeee
Q 004208 431 FDNCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHS 465 (768)
Q Consensus 431 ~d~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~ 465 (768)
||++.+ ++++||.+.++|+++.+++....+
T Consensus 91 ~d~~~~-----~~~~iG~~~i~l~~l~~~~~~~~~ 120 (123)
T cd04035 91 LDEDRF-----GNDFLGETRIPLKKLKPNQTKQFN 120 (123)
T ss_pred EEcCCc-----CCeeEEEEEEEcccCCCCcceEee
Confidence 999873 588999999999999987643333
No 195
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.49 E-value=8.6e-14 Score=171.05 Aligned_cols=118 Identities=24% Similarity=0.443 Sum_probs=102.7
Q ss_pred CeeeEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEecCe-eeeeccccCCCCCccccEEEEEEeCCC--cEEEEEEEeCC
Q 004208 358 PVIGVLELGILSAKELLPMKSRDGRGTTDAYCVAKYANK-WVRTRTVVDSFDPKWNEQYTWEVYDPY--TVITLVVFDNC 434 (768)
Q Consensus 358 ~~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~~-~~~T~~~~~t~nP~wne~~~~~v~~~~--~~l~v~v~d~~ 434 (768)
...|.|.|+|++|+||.. ..|++||||++.+|++ ..||++++++.||+|||.|+|.+.+|. +.|+|+|||+|
T Consensus 1977 ~~~G~L~V~V~~a~nl~~-----~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d 2051 (2102)
T PLN03200 1977 CLPGSLTVTIKRGNNLKQ-----SMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKN 2051 (2102)
T ss_pred hCCcceEEEEeecccccc-----ccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecC
Confidence 457999999999999962 3578999999999965 789999999999999999999999875 68999999999
Q ss_pred CCCCCCCCCCceEEEEEeccccccCceeeeeEeeeecCCCCcccccE---EEEEEEEE
Q 004208 435 HLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPLVALLPNGVKKMGE---VQLAVRFT 489 (768)
Q Consensus 435 ~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~---i~l~~~~~ 489 (768)
.|+ ++.+|++.|++.++..++.++.||+|... +++.|+ |++++.++
T Consensus 2052 ~f~-----kd~~G~~~i~l~~vv~~~~~~~~~~L~~~----~~k~G~~~~~~~e~~w~ 2100 (2102)
T PLN03200 2052 TFG-----KSSLGKVTIQIDRVVMEGTYSGEYSLNPE----SNKDGSSRTLEIEFQWS 2100 (2102)
T ss_pred ccC-----CCCCceEEEEHHHHhcCceeeeeeecCcc----cccCCCcceEEEEEEec
Confidence 875 45999999999999999999999999742 235577 88888774
No 196
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.46 E-value=9.6e-13 Score=115.11 Aligned_cols=83 Identities=25% Similarity=0.528 Sum_probs=66.6
Q ss_pred EEEEEEEecCCCCCCCCCCCCCcCcEEEEEecC-----eeeeeccccCCCCCccccEEEEEEeCCCcEEEEEEEeCCC-C
Q 004208 363 LELGILSAKELLPMKSRDGRGTTDAYCVAKYAN-----KWVRTRTVVDSFDPKWNEQYTWEVYDPYTVITLVVFDNCH-L 436 (768)
Q Consensus 363 l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~-----~~~~T~~~~~t~nP~wne~~~~~v~~~~~~l~v~v~d~~~-~ 436 (768)
|.|+|++|+||+. .+||||++++++ ..+||+++++|+||+|||.|+|.+.. ...|.+.|||++. .
T Consensus 1 L~V~V~~A~~L~~--------~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~-s~~L~~~v~d~~~~~ 71 (118)
T cd08686 1 LNVIVHSAQGFKQ--------SANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG-SQTLRILCYEKCYSK 71 (118)
T ss_pred CEEEEEeCCCCCC--------CCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC-CCEEEEEEEEccccc
Confidence 5799999999953 489999998853 35999999999999999999999964 6699999999831 0
Q ss_pred --CCCCCCCCceEEEEEecc
Q 004208 437 --HPGGAKDSRIGKVRIRLS 454 (768)
Q Consensus 437 --~~~~~~d~~lG~~~i~l~ 454 (768)
....++|+++|++.|.|.
T Consensus 72 ~~~d~~~~d~~~G~g~i~Ld 91 (118)
T cd08686 72 VKLDGEGTDAIMGKGQIQLD 91 (118)
T ss_pred ccccccCcccEEEEEEEEEC
Confidence 000248999988777664
No 197
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.44 E-value=5.3e-13 Score=118.74 Aligned_cols=87 Identities=21% Similarity=0.348 Sum_probs=75.5
Q ss_pred EEEEEeecCCCCCCCCCCCcEEEEEECCe------eeEeeeecCCCCCeeeeEEEEEeccCC----CceEEEEEEEcCCC
Q 004208 43 VRIVRARDLQVNQVTGTCDPYVEVKIGNY------KGTTIPFEKKLNPEWNQVFAFTKERLQ----AISVELLVKDKMIV 112 (768)
Q Consensus 43 V~i~~a~~L~~~d~~g~~dPyv~v~~~~~------~~~T~~~~~t~nP~Wne~f~f~~~~~~----~~~L~i~V~d~~~~ 112 (768)
+-.++|++|+..|..|.+||||+|++.+. .++|++++++.||+|| +|.|...++. ...|.|+|||++..
T Consensus 4 ~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~ 82 (110)
T cd04047 4 ELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSS 82 (110)
T ss_pred EEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCC
Confidence 44569999999999999999999998653 5899999999999999 7888865432 57999999999998
Q ss_pred -CCceeEEEEEcCCCCCCC
Q 004208 113 -NGDFIGKIKIDMPDIPKR 130 (768)
Q Consensus 113 -~d~~lG~~~i~l~~l~~~ 130 (768)
+|++||++.+++.++...
T Consensus 83 ~~d~~iG~~~~~l~~l~~~ 101 (110)
T cd04047 83 GKHDLIGEFETTLDELLKS 101 (110)
T ss_pred CCCcEEEEEEEEHHHHhcC
Confidence 999999999999999744
No 198
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.43 E-value=1.1e-13 Score=137.46 Aligned_cols=219 Identities=18% Similarity=0.236 Sum_probs=160.9
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEeeecccCCCCCCcccceEEEE--ecCC-CCCcEEEEEEec
Q 004208 200 WYLRVNVIEAQDLVPKQRNRNPEVFIKAIFGN-----VVLKTTVSAKKTVNPTWNEDLMFV--AAEP-FDDPLILTVEDK 271 (768)
Q Consensus 200 ~~L~V~v~~a~~L~~~d~~~~~dpyV~v~lg~-----~~~~T~~i~~~t~nP~wne~f~f~--~~~~-~~~~L~i~V~d~ 271 (768)
..+.+++..|++|.+++.++..|||++..++. .+.+|++..+ ++||.|+|+..+. ..+. ....+++.|.|.
T Consensus 93 ~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n-~lN~~w~etev~~~i~~~~~~~K~~Rk~vcdn 171 (362)
T KOG1013|consen 93 RMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRN-TLNPEWNETEVYEGITDDDTHLKVLRKVVCDN 171 (362)
T ss_pred hhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhcc-CcCcceeccceecccccchhhhhhhheeeccC
Confidence 35899999999999999999999999999842 3578888887 9999999986554 2232 345688899999
Q ss_pred cCCCCCceeEEEEEeccccccccCCCCCCceeEEcccCccCccccccccccceEEEEEecCCCcccccCcccccCccccc
Q 004208 272 LGDNKEECLGRLVLPLSKAGKRFLPLPAAAIWYNLERNIANGEEKKDVRFASRICLRFSLDGGYHVFDEATNYSSDLRST 351 (768)
Q Consensus 272 d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~g~~~~~~~~~g~i~l~v~~~~~~~~~~~~~~~~~~~~~~ 351 (768)
+.+...+++|+..+++..+.... ......|+.-..+.+ .+........|+|.+++..+
T Consensus 172 ~~~~~~~sqGq~r~~lkKl~p~q--~k~f~~cl~~~lp~~-rad~~~~E~rg~i~isl~~~------------------- 229 (362)
T KOG1013|consen 172 DKKTHNESQGQSRVSLKKLKPLQ--RKSFNICLEKSLPSE-RADRDEDEERGAILISLAYS------------------- 229 (362)
T ss_pred cccccccCcccchhhhhccChhh--cchhhhhhhccCCcc-cccccchhhccceeeeeccC-------------------
Confidence 99888999999998888776332 122334443333211 11111224456666655431
Q ss_pred cccCCCCeeeEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEecC-----eeeeeccccCCCCCccccEEEEEEeCC---C
Q 004208 352 MKQLWPPVIGVLELGILSAKELLPMKSRDGRGTTDAYCVAKYAN-----KWVRTRTVVDSFDPKWNEQYTWEVYDP---Y 423 (768)
Q Consensus 352 ~~~l~~~~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~-----~~~~T~~~~~t~nP~wne~~~~~v~~~---~ 423 (768)
.....+.|++++|..|..+ |.+|.+|||+..++.. .+.+|.+.+++.+|.||++|.|.+... .
T Consensus 230 ------s~~~~l~vt~iRc~~l~ss---Dsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~ 300 (362)
T KOG1013|consen 230 ------STTPGLIVTIIRCSHLASS---DSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAY 300 (362)
T ss_pred ------cCCCceEEEEEEeeeeecc---ccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhc
Confidence 2223488999999999996 7889999999998843 248999999999999999999998753 3
Q ss_pred cEEEEEEEeCCCCCCCCCCCCceEEEEEecc
Q 004208 424 TVITLVVFDNCHLHPGGAKDSRIGKVRIRLS 454 (768)
Q Consensus 424 ~~l~v~v~d~~~~~~~~~~d~~lG~~~i~l~ 454 (768)
..+.|.|||.+. +...+.+|-+...+.
T Consensus 301 ~kv~lsvgd~~~----G~s~d~~GG~~~g~~ 327 (362)
T KOG1013|consen 301 KKVALSVGDYDI----GKSNDSIGGSMLGGY 327 (362)
T ss_pred ceEEEeecccCC----CcCccCCCccccccc
Confidence 489999999987 446778888766554
No 199
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.43 E-value=8.5e-13 Score=111.27 Aligned_cols=81 Identities=33% Similarity=0.468 Sum_probs=74.3
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcCCC-CCce
Q 004208 41 LYVRIVRARDLQVNQVTGTCDPYVEVKIGN---YKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIV-NGDF 116 (768)
Q Consensus 41 L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~---~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~~-~d~~ 116 (768)
|.|+|++|+||...+..+.+||||++.+++ ...+|++++++.||.|||+|.|.+.......|.|+|||.+.. +|++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~ 80 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL 80 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence 789999999999988888999999999998 679999999999999999999997766567799999999999 7999
Q ss_pred eEEEE
Q 004208 117 IGKIK 121 (768)
Q Consensus 117 lG~~~ 121 (768)
||+++
T Consensus 81 iG~~~ 85 (85)
T PF00168_consen 81 IGEVK 85 (85)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99985
No 200
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.42 E-value=3.2e-13 Score=166.10 Aligned_cols=121 Identities=19% Similarity=0.278 Sum_probs=100.8
Q ss_pred ccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-eeEeeeecCCCCCeeeeEEEEEeccCC-CceEEEEEEEcCC
Q 004208 34 LVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGNY-KGTTIPFEKKLNPEWNQVFAFTKERLQ-AISVELLVKDKMI 111 (768)
Q Consensus 34 ~~~~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~~-~~~T~~~~~t~nP~Wne~f~f~~~~~~-~~~L~i~V~d~~~ 111 (768)
|..-.|.|.|+|++|+||. +..|++||||++++|++ +.||++++++.||+|||+|.|.++++. ...|.|+|||+|.
T Consensus 1975 ~~~~~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~ 2052 (2102)
T PLN03200 1975 LQCLPGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNT 2052 (2102)
T ss_pred HhhCCcceEEEEeeccccc--cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCc
Confidence 3345799999999999997 34689999999999965 789999999999999999999988764 3679999999999
Q ss_pred CCCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCCCccceE---EEEEEEEc
Q 004208 112 VNGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGSRARGE---LMFAIWFG 163 (768)
Q Consensus 112 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~---i~l~i~~~ 163 (768)
++++.+|.++|++.++..+. ....||+|.+..+ ..|+ |.+.+.|.
T Consensus 2053 f~kd~~G~~~i~l~~vv~~~-----~~~~~~~L~~~~~--k~G~~~~~~~e~~w~ 2100 (2102)
T PLN03200 2053 FGKSSLGKVTIQIDRVVMEG-----TYSGEYSLNPESN--KDGSSRTLEIEFQWS 2100 (2102)
T ss_pred cCCCCCceEEEEHHHHhcCc-----eeeeeeecCcccc--cCCCcceEEEEEEec
Confidence 97779999999999997653 2578999996422 2366 88876554
No 201
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.39 E-value=1.6e-12 Score=115.60 Aligned_cols=87 Identities=22% Similarity=0.280 Sum_probs=73.5
Q ss_pred EEEEecCCCCCCCCCCCCCcCcEEEEEecCe------eeeeccccCCCCCccccEEEEEEeC-----CCcEEEEEEEeCC
Q 004208 366 GILSAKELLPMKSRDGRGTTDAYCVAKYANK------WVRTRTVVDSFDPKWNEQYTWEVYD-----PYTVITLVVFDNC 434 (768)
Q Consensus 366 ~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~~------~~~T~~~~~t~nP~wne~~~~~v~~-----~~~~l~v~v~d~~ 434 (768)
..++|++|+.+ +..|.+||||++++++. .++|++++++.||.|| .|.|++.+ +...|.|+|||++
T Consensus 5 ~~i~a~~L~~~---d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d 80 (110)
T cd04047 5 LQFSGKKLDKK---DFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYD 80 (110)
T ss_pred EEEEeCCCCCC---CCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeC
Confidence 34799999985 67789999999998543 4999999999999999 68877643 2569999999999
Q ss_pred CCCCCCCCCCceEEEEEeccccccCc
Q 004208 435 HLHPGGAKDSRIGKVRIRLSTLETDR 460 (768)
Q Consensus 435 ~~~~~~~~d~~lG~~~i~l~~l~~~~ 460 (768)
.++ +|++||++.++++++..++
T Consensus 81 ~~~----~d~~iG~~~~~l~~l~~~~ 102 (110)
T cd04047 81 SSG----KHDLIGEFETTLDELLKSS 102 (110)
T ss_pred CCC----CCcEEEEEEEEHHHHhcCC
Confidence 865 8999999999999998654
No 202
>PF06398 Pex24p: Integral peroxisomal membrane peroxin; InterPro: IPR010482 Peroxisomes play diverse roles in the cell, compartmentalising many activities related to lipid metabolism and functioning in the decomposition of toxic hydrogen peroxide. Sequence similarity was identified between two hypothetical proteins and the peroxin integral membrane protein Pex24p [].
Probab=99.39 E-value=4.2e-12 Score=137.54 Aligned_cols=178 Identities=17% Similarity=0.267 Sum_probs=122.6
Q ss_pred ceeeccchhhhHHHHHHHHhhHHHHH---HhhccccccccchhHHHHHHHHHHHHHcchhH---HHHHHHHHHHHHhhhc
Q 004208 555 QMWSMRRGKANLARLMRFLNGFGVAW---IWFDQVRRWKNPMTTTFVHVFYVIMVLFPQMI---LATFFFILFGVVIMKF 628 (768)
Q Consensus 555 ~~fs~~~~~~n~~rl~~~~~~~~~~~---~~~~~i~~W~~p~~t~~~~~~~~~~v~~p~l~---lp~~~l~l~~~~~~~~ 628 (768)
|.+|++.+..|+.++.+.+.+++.++ +.+.++++|++|..|+.+.++|+++|++|.+. +|+.++.++ +++..|
T Consensus 1 p~lS~~ll~~n~~~l~~~l~~~f~~~~~~d~vl~il~W~~p~~t~~~L~l~t~~~l~p~l~l~~lp~~~ll~~-il~~~y 79 (359)
T PF06398_consen 1 PPLSSPLLSSNFPRLSSRLGPIFPFQLILDRVLRILTWTNPDYTLSFLLLYTFLCLNPYLLLLSLPLGLLLFG-ILLPSY 79 (359)
T ss_pred CCcChHHHHhChHHHHHHHHHhhHHHHHHHHHHHeEEeCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 45789999999999999999999999 99999999999999999999999999999873 555444433 333344
Q ss_pred ccCC-CCCCCCCcccccccCCCCCCCccccCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hccc
Q 004208 629 KRRP-RHPPHMDIKLSFADKAHPDELDEEFDTFPSSKQGHILTTRYDRLRSIAARMVTLNGDLDSQLERLQS----LIDW 703 (768)
Q Consensus 629 ~~~~-~~~~~~~~~~s~~~~~~~~~~~~e~d~~~~~~~~~~~~~~~~~l~~~~~~vQ~~l~~~a~~~e~~~~----l~~w 703 (768)
..+. ...+.... ...+.+.+.+..|+-.+. -..+...+.++||.|+.+.+.++.+.. .++|
T Consensus 80 l~~~p~~~~~~~~--------~~~~~~~~~~~~ptl~~~------s~e~~~nL~dlQn~m~~~~~~~d~~~~~~~~~~~f 145 (359)
T PF06398_consen 80 LYRHPSPTSSLPK--------SYEDHNPEPSEGPTLDKP------SREIVMNLRDLQNKMEDLSDPYDFLSSFLYPYLNF 145 (359)
T ss_pred HeecCCCcccccc--------cccccCCCcCCCCCcchh------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccC
Confidence 3332 21111100 000001111111111100 122345556888888888888888874 4579
Q ss_pred cCchhHHHHHHHHHHHHHHHH----HHhHHhhhhhhhee-cccCCCccC
Q 004208 704 RDPRATAMFSIFCLMAAVVFY----IVPLWILLLFAGPF-VMRHPRFRI 747 (768)
Q Consensus 704 ~~p~~t~~~~~~l~~~~~v~~----~vP~r~i~l~~g~~-~~r~P~~r~ 747 (768)
+++..|.+++++|+++.+.++ +||+|++++++|.. .+.||..++
T Consensus 146 ~~e~~s~~~f~~l~~~~~~~~l~~~~ip~r~~ll~~g~~~l~~Hp~~~~ 194 (359)
T PF06398_consen 146 SDENLSSLIFLLLLLSPILLLLLSPFIPWRFVLLVSGAFVLLYHPPWRQ 194 (359)
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHhhcCCcHHH
Confidence 999999998888877766543 68999999999944 688998875
No 203
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.37 E-value=8.5e-13 Score=140.11 Aligned_cols=120 Identities=24% Similarity=0.440 Sum_probs=104.6
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcCCC-------
Q 004208 40 FLYVRIVRARDLQVNQVTGTCDPYVEVKIGNYKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIV------- 112 (768)
Q Consensus 40 ~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~~------- 112 (768)
.+.++|+.|.+|.++|..|++||||.+.+|..+.+|+++.+.+||+|||.|.|...+. ++.|.+.|||.|..
T Consensus 296 kitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechns-tdrikvrvwded~dlksklrq 374 (1283)
T KOG1011|consen 296 KITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNS-TDRIKVRVWDEDNDLKSKLRQ 374 (1283)
T ss_pred eeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCC-CceeEEEEecCcccHHHHHHH
Confidence 6899999999999999999999999999999999999999999999999999999876 78999999998751
Q ss_pred -----CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCCC-ccceEEEEEEEEcccCC
Q 004208 113 -----NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGS-RARGELMFAIWFGTQAD 167 (768)
Q Consensus 113 -----~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~-~~~G~i~l~i~~~~~~d 167 (768)
+|||+|+..|.+..+... ...||.|+..... .+.|-|.+.|.+.-.++
T Consensus 375 kl~resddflgqtvievrtlsge-------mdvwynlekrtdksavsgairlhisveikge 428 (1283)
T KOG1011|consen 375 KLTRESDDFLGQTVIEVRTLSGE-------MDVWYNLEKRTDKSAVSGAIRLHISVEIKGE 428 (1283)
T ss_pred HhhhcccccccceeEEEEecccc-------hhhhcchhhccchhhccceEEEEEEEEEcCc
Confidence 789999999999988654 4789999987653 37788888777654333
No 204
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.32 E-value=3.2e-12 Score=135.81 Aligned_cols=125 Identities=24% Similarity=0.392 Sum_probs=104.2
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEecCeeeeeccccCCCCCccccEEEEEEeCCCcEEEEEEEeCCCCCC--
Q 004208 361 GVLELGILSAKELLPMKSRDGRGTTDAYCVAKYANKWVRTRTVVDSFDPKWNEQYTWEVYDPYTVITLVVFDNCHLHP-- 438 (768)
Q Consensus 361 g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~~~~~T~~~~~t~nP~wne~~~~~v~~~~~~l~v~v~d~~~~~~-- 438 (768)
..+.++|+.|+||.+ +|..|++||||.+.+|..+.||+++...+||+|||.|.|+..+..+.|.|.|||+|.--.
T Consensus 295 akitltvlcaqgl~a---kdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechnstdrikvrvwded~dlksk 371 (1283)
T KOG1011|consen 295 AKITLTVLCAQGLIA---KDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNSTDRIKVRVWDEDNDLKSK 371 (1283)
T ss_pred eeeEEeeeeccccee---cccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCCCceeEEEEecCcccHHHH
Confidence 458899999999998 478899999999999999999999999999999999999999999999999999985210
Q ss_pred -----CCCCCCceEEEEEeccccccCceeeeeEeeeecCCCCcccccEEEEEEEEEec
Q 004208 439 -----GGAKDSRIGKVRIRLSTLETDRIYTHSYPLVALLPNGVKKMGEVQLAVRFTCS 491 (768)
Q Consensus 439 -----~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~~~ 491 (768)
.++.|++||+..|-+..|... ..-||.|..... +...+|.|+|.|.++.+
T Consensus 372 lrqkl~resddflgqtvievrtlsge--mdvwynlekrtd-ksavsgairlhisveik 426 (1283)
T KOG1011|consen 372 LRQKLTRESDDFLGQTVIEVRTLSGE--MDVWYNLEKRTD-KSAVSGAIRLHISVEIK 426 (1283)
T ss_pred HHHHhhhcccccccceeEEEEecccc--hhhhcchhhccc-hhhccceEEEEEEEEEc
Confidence 026899999999999988653 367999865432 33456988888887643
No 205
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.28 E-value=1.6e-11 Score=103.45 Aligned_cols=82 Identities=32% Similarity=0.492 Sum_probs=74.3
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC---eEEeeecccCCCCCCcccceEEEEecCCCCCcEEEEEEeccCCCCCc
Q 004208 202 LRVNVIEAQDLVPKQRNRNPEVFIKAIFGN---VVLKTTVSAKKTVNPTWNEDLMFVAAEPFDDPLILTVEDKLGDNKEE 278 (768)
Q Consensus 202 L~V~v~~a~~L~~~d~~~~~dpyV~v~lg~---~~~~T~~i~~~t~nP~wne~f~f~~~~~~~~~L~i~V~d~d~~~~d~ 278 (768)
|+|+|++|+||+..+..+.+||||++.+++ ..++|+++++ +.+|.|+|+|.|.+..+..+.|.|+|||++..++++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~-~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~ 79 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKN-TSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDE 79 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSS-BSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeec-cccceeeeeeeeeeecccccceEEEEEECCCCCCCC
Confidence 689999999999988888999999999966 6799999987 899999999999987776667999999999988899
Q ss_pred eeEEEE
Q 004208 279 CLGRLV 284 (768)
Q Consensus 279 ~lG~~~ 284 (768)
+||++.
T Consensus 80 ~iG~~~ 85 (85)
T PF00168_consen 80 LIGEVK 85 (85)
T ss_dssp EEEEEE
T ss_pred EEEEEC
Confidence 999974
No 206
>PLN02270 phospholipase D alpha
Probab=99.19 E-value=1.7e-10 Score=130.57 Aligned_cols=127 Identities=16% Similarity=0.234 Sum_probs=105.9
Q ss_pred eeEEEEEEEEecCCCCCCC---------------CCCCCCcCcEEEEEecCee-eeeccccCC-CCCccccEEEEEEeCC
Q 004208 360 IGVLELGILSAKELLPMKS---------------RDGRGTTDAYCVAKYANKW-VRTRTVVDS-FDPKWNEQYTWEVYDP 422 (768)
Q Consensus 360 ~g~l~v~v~~a~~L~~~~~---------------~~~~g~~dpyv~v~~g~~~-~~T~~~~~t-~nP~wne~~~~~v~~~ 422 (768)
-|.|.++|++|++|+.++- ..+.+.+|||+.|.+++.+ .||+++.+. .||.|||.|.+++..+
T Consensus 7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~ 86 (808)
T PLN02270 7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHM 86 (808)
T ss_pred ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccC
Confidence 3779999999999986310 1234678999999998755 799999874 6999999999999999
Q ss_pred CcEEEEEEEeCCCCCCCCCCCCceEEEEEeccccccCceeeeeEeeeecCCCCcccccEEEEEEEEEec
Q 004208 423 YTVITLVVFDNCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPLVALLPNGVKKMGEVQLAVRFTCS 491 (768)
Q Consensus 423 ~~~l~v~v~d~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~~~ 491 (768)
...+++.|.|.+.++ ..+||.+.||+.++..|..+++|+|+.+...+-.+...+|+++++|...
T Consensus 87 ~~~v~f~vkd~~~~g-----~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~ 150 (808)
T PLN02270 87 ASNIIFTVKDDNPIG-----ATLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEV 150 (808)
T ss_pred cceEEEEEecCCccC-----ceEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEEEEc
Confidence 999999999999875 5699999999999999999999999988754333333489999999864
No 207
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.18 E-value=1.4e-10 Score=100.52 Aligned_cols=99 Identities=30% Similarity=0.541 Sum_probs=85.5
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC-eeeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcCCC-CCceeE
Q 004208 41 LYVRIVRARDLQVNQVTGTCDPYVEVKIGN-YKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIV-NGDFIG 118 (768)
Q Consensus 41 L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~-~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~~-~d~~lG 118 (768)
|.|+|++|++|......+.+||||.+.+.+ ...+|.++.++.||.|||.|.|.+.......|.|+||+.+.. .++++|
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ig 80 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFLG 80 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCceeE
Confidence 578999999998766677899999999998 889999999999999999999998875578899999999988 699999
Q ss_pred EEEEcCCCCC-CCCCCCCCCCCeEEEc
Q 004208 119 KIKIDMPDIP-KRVPPDSPLAPEWKRL 144 (768)
Q Consensus 119 ~~~i~l~~l~-~~~~~~~~~~~~w~~L 144 (768)
++.+++.++. .. .....|++|
T Consensus 81 ~~~~~l~~l~~~~-----~~~~~~~~l 102 (102)
T cd00030 81 EVEIPLSELLDSG-----KEGELWLPL 102 (102)
T ss_pred EEEEeHHHhhhcC-----CcCcceecC
Confidence 9999999987 22 224667764
No 208
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.17 E-value=1.6e-10 Score=104.28 Aligned_cols=93 Identities=20% Similarity=0.282 Sum_probs=77.5
Q ss_pred EEEEEEEecCCCCCCCCCCCC--CcCcEEEEEecC---eeeeeccccCCCC--CccccEEEEEEeCC-------------
Q 004208 363 LELGILSAKELLPMKSRDGRG--TTDAYCVAKYAN---KWVRTRTVVDSFD--PKWNEQYTWEVYDP------------- 422 (768)
Q Consensus 363 l~v~v~~a~~L~~~~~~~~~g--~~dpyv~v~~g~---~~~~T~~~~~t~n--P~wne~~~~~v~~~------------- 422 (768)
|+|.|++|+|++..+. +..| .+||||++.+.+ +..+|.++++++| |.||+.|.|++..+
T Consensus 2 LRViIw~~~~v~~~~~-~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~ 80 (133)
T cd08374 2 LRVIVWNTRDVLNDDT-NITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEH 80 (133)
T ss_pred EEEEEEECcCCccccc-ccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeecc
Confidence 8999999999765432 3345 599999999843 5699999999998 99999999987641
Q ss_pred -----------CcEEEEEEEeCCCCCCCCCCCCceEEEEEeccccccCc
Q 004208 423 -----------YTVITLVVFDNCHLHPGGAKDSRIGKVRIRLSTLETDR 460 (768)
Q Consensus 423 -----------~~~l~v~v~d~~~~~~~~~~d~~lG~~~i~l~~l~~~~ 460 (768)
...|.++|||+|.++ +|++||.++++|..+..+.
T Consensus 81 ~~~~~~~e~~~~~~L~lqvwD~D~~s----~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 81 FWSLDETEYKIPPKLTLQVWDNDKFS----PDDFLGSLELDLSILPRPA 125 (133)
T ss_pred ccccCcceEecCcEEEEEEEECcccC----CCCcceEEEEEhhhccccc
Confidence 247999999999976 8999999999999988764
No 209
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.17 E-value=1.7e-10 Score=104.12 Aligned_cols=91 Identities=25% Similarity=0.353 Sum_probs=77.9
Q ss_pred EEEEEEEeecCCCCC--CCC--CCCcEEEEEECC---eeeEeeeecCCCC--CeeeeEEEEEecc---------------
Q 004208 41 LYVRIVRARDLQVNQ--VTG--TCDPYVEVKIGN---YKGTTIPFEKKLN--PEWNQVFAFTKER--------------- 96 (768)
Q Consensus 41 L~V~i~~a~~L~~~d--~~g--~~dPyv~v~~~~---~~~~T~~~~~t~n--P~Wne~f~f~~~~--------------- 96 (768)
|+|.|.+|++++..+ ..| .+||||++.+.+ .+++|.+..+++| |+||+.|.|++.-
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 899999999966543 356 499999999986 4689999999999 9999999988533
Q ss_pred --------CCCceEEEEEEEcCCC-CCceeEEEEEcCCCCCCCC
Q 004208 97 --------LQAISVELLVKDKMIV-NGDFIGKIKIDMPDIPKRV 131 (768)
Q Consensus 97 --------~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~ 131 (768)
.....|.++|||.|.+ +|++||++.++|..+..+.
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred cccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccccc
Confidence 3457899999999999 9999999999999987653
No 210
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.16 E-value=2e-10 Score=99.88 Aligned_cols=90 Identities=34% Similarity=0.564 Sum_probs=80.7
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCe---eeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcCCC-CCce
Q 004208 41 LYVRIVRARDLQVNQVTGTCDPYVEVKIGNY---KGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIV-NGDF 116 (768)
Q Consensus 41 L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~~---~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~~-~d~~ 116 (768)
|.|+|++|++|...+..+..+|||++++.+. ..+|+++.++.||.|||+|.|.+.......|.|+|||.+.. .+.+
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ 81 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDF 81 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCce
Confidence 7899999999988765578899999999975 78999999999999999999998876578999999999987 7999
Q ss_pred eEEEEEcCCCCCCC
Q 004208 117 IGKIKIDMPDIPKR 130 (768)
Q Consensus 117 lG~~~i~l~~l~~~ 130 (768)
+|.+.+++.++..+
T Consensus 82 ~G~~~~~l~~~~~~ 95 (101)
T smart00239 82 IGQVTIPLSDLLLG 95 (101)
T ss_pred eEEEEEEHHHcccC
Confidence 99999999988665
No 211
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.15 E-value=2.5e-10 Score=99.03 Aligned_cols=99 Identities=28% Similarity=0.494 Sum_probs=84.4
Q ss_pred EEEEEEEecCCCCCCCCCCCCCcCcEEEEEecC-eeeeeccccCCCCCccccEEEEEEeC-CCcEEEEEEEeCCCCCCCC
Q 004208 363 LELGILSAKELLPMKSRDGRGTTDAYCVAKYAN-KWVRTRTVVDSFDPKWNEQYTWEVYD-PYTVITLVVFDNCHLHPGG 440 (768)
Q Consensus 363 l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~-~~~~T~~~~~t~nP~wne~~~~~v~~-~~~~l~v~v~d~~~~~~~~ 440 (768)
|.|.|++|++|... ...+.++|||.+.+.+ ..++|+++.++.||.||+.|.|.+.. ....+.|+|||.+..+
T Consensus 1 l~v~i~~~~~l~~~---~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~--- 74 (102)
T cd00030 1 LRVTVIEARNLPAK---DLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFS--- 74 (102)
T ss_pred CEEEEEeeeCCCCc---CCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCC---
Confidence 46899999999873 3456899999999988 88999999999999999999999988 6779999999998743
Q ss_pred CCCCceEEEEEeccccc-cCceeeeeEee
Q 004208 441 AKDSRIGKVRIRLSTLE-TDRIYTHSYPL 468 (768)
Q Consensus 441 ~~d~~lG~~~i~l~~l~-~~~~~~~~~~L 468 (768)
.+.+||.+.+++.++. .......|++|
T Consensus 75 -~~~~ig~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 75 -KDDFLGEVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred -CCceeEEEEEeHHHhhhcCCcCcceecC
Confidence 6889999999999998 55555667654
No 212
>PLN02223 phosphoinositide phospholipase C
Probab=99.13 E-value=5.4e-10 Score=121.62 Aligned_cols=115 Identities=17% Similarity=0.210 Sum_probs=92.6
Q ss_pred cEEEEEEEEeecCCCC-----CCCCCCCcEEEEEECC-----eeeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEE
Q 004208 39 EFLYVRIVRARDLQVN-----QVTGTCDPYVEVKIGN-----YKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKD 108 (768)
Q Consensus 39 ~~L~V~i~~a~~L~~~-----d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d 108 (768)
..|.|+|+.|.+++.. +.....||||+|.+.| .+.+|.+..++.||+|||+|.|.+..++-..|+|+|+|
T Consensus 409 ~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~D 488 (537)
T PLN02223 409 KILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVYD 488 (537)
T ss_pred eEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEEe
Confidence 5799999999987521 2234579999999976 35678888889999999999999987766789999999
Q ss_pred cCCC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCCCc-cceEEEEEEE
Q 004208 109 KMIV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGSR-ARGELMFAIW 161 (768)
Q Consensus 109 ~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~-~~G~i~l~i~ 161 (768)
+|.. +|+|+|++.+++..|..+ -++++|.+..|.. ....|.+.+.
T Consensus 489 ~D~~~~ddfiGQ~~LPv~~Lr~G--------yR~VpL~~~~g~~l~~~~Ll~~f~ 535 (537)
T PLN02223 489 YEVSTADAFCGQTCLPVSELIEG--------IRAVPLYDERGKACSSTMLLTRFK 535 (537)
T ss_pred cCCCCCCcEEEEEecchHHhcCC--------ceeEeccCCCcCCCCCceEEEEEE
Confidence 9987 899999999999999876 4778998887764 3345555544
No 213
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.11 E-value=5.3e-10 Score=97.13 Aligned_cols=91 Identities=31% Similarity=0.541 Sum_probs=79.3
Q ss_pred EEEEEEEecCCCCCCCCCCCCCcCcEEEEEecCe---eeeeccccCCCCCccccEEEEEEeCC-CcEEEEEEEeCCCCCC
Q 004208 363 LELGILSAKELLPMKSRDGRGTTDAYCVAKYANK---WVRTRTVVDSFDPKWNEQYTWEVYDP-YTVITLVVFDNCHLHP 438 (768)
Q Consensus 363 l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~~---~~~T~~~~~t~nP~wne~~~~~v~~~-~~~l~v~v~d~~~~~~ 438 (768)
+.+.|++|+||... ...+..+|||++++++. ..+|+++.++.||.|||.|.|.+..+ ...|.|+|||++..+
T Consensus 2 l~i~i~~~~~l~~~---~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~- 77 (101)
T smart00239 2 LTVKIISARNLPKK---DKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFG- 77 (101)
T ss_pred eEEEEEEeeCCCCC---CCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCcc-
Confidence 68999999999874 33357899999999875 79999999999999999999999987 789999999998743
Q ss_pred CCCCCCceEEEEEeccccccCc
Q 004208 439 GGAKDSRIGKVRIRLSTLETDR 460 (768)
Q Consensus 439 ~~~~d~~lG~~~i~l~~l~~~~ 460 (768)
.+.++|.+.+++.++..+.
T Consensus 78 ---~~~~~G~~~~~l~~~~~~~ 96 (101)
T smart00239 78 ---RDDFIGQVTIPLSDLLLGG 96 (101)
T ss_pred ---CCceeEEEEEEHHHcccCc
Confidence 6899999999999987664
No 214
>PLN02270 phospholipase D alpha
Probab=99.03 E-value=2.1e-09 Score=121.84 Aligned_cols=122 Identities=18% Similarity=0.296 Sum_probs=102.5
Q ss_pred cEEEEEEEEeecCCCCC------------------CCCCCCcEEEEEECCe-eeEeeeecCC-CCCeeeeEEEEEeccCC
Q 004208 39 EFLYVRIVRARDLQVNQ------------------VTGTCDPYVEVKIGNY-KGTTIPFEKK-LNPEWNQVFAFTKERLQ 98 (768)
Q Consensus 39 ~~L~V~i~~a~~L~~~d------------------~~g~~dPyv~v~~~~~-~~~T~~~~~t-~nP~Wne~f~f~~~~~~ 98 (768)
|.|.|+|.+|++|++.+ ..+++||||.|.+++. ..||+++.+. .||+|||.|.+.+...
T Consensus 8 g~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~- 86 (808)
T PLN02270 8 GTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHM- 86 (808)
T ss_pred cceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccC-
Confidence 68999999999998631 1357899999999985 5799999885 6999999999999877
Q ss_pred CceEEEEEEEcCCCCCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCCCccc--eEEEEEEEEcccC
Q 004208 99 AISVELLVKDKMIVNGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGSRAR--GELMFAIWFGTQA 166 (768)
Q Consensus 99 ~~~L~i~V~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~--G~i~l~i~~~~~~ 166 (768)
...|+|.|.|.|.+...+||.+.|++.++..+. ....||++.+..++..+ ..|+++++|.+..
T Consensus 87 ~~~v~f~vkd~~~~g~~~ig~~~~p~~~~~~g~-----~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~ 151 (808)
T PLN02270 87 ASNIIFTVKDDNPIGATLIGRAYIPVEEILDGE-----EVDRWVEILDNDKNPIHGGSKIHVKLQYFEVT 151 (808)
T ss_pred cceEEEEEecCCccCceEEEEEEEEHHHhcCCC-----ccccEEeccCCCCCcCCCCCEEEEEEEEEEcc
Confidence 578999999999998889999999999998774 26899999988765433 4788899887644
No 215
>PLN02952 phosphoinositide phospholipase C
Probab=99.02 E-value=3.1e-09 Score=118.48 Aligned_cols=115 Identities=18% Similarity=0.268 Sum_probs=91.4
Q ss_pred cEEEEEEEEeecCCCC--C----CCCCCCcEEEEEECC-----eeeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEE
Q 004208 39 EFLYVRIVRARDLQVN--Q----VTGTCDPYVEVKIGN-----YKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVK 107 (768)
Q Consensus 39 ~~L~V~i~~a~~L~~~--d----~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~ 107 (768)
..|.|+|+.|.+++.. + .....||||+|.+-| .+.+|+++.++.||+|||+|.|.+..++-..|.|+||
T Consensus 470 ~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V~ 549 (599)
T PLN02952 470 KTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEVR 549 (599)
T ss_pred ceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEEE
Confidence 5799999999887431 1 122359999999865 5679999999999999999999987765678999999
Q ss_pred EcCCC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCCCc-cceEEEEEEE
Q 004208 108 DKMIV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGSR-ARGELMFAIW 161 (768)
Q Consensus 108 d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~-~~G~i~l~i~ 161 (768)
|+|.. .++|+|++.+++..|..+ -+|++|.+..|.. ..-.|.+.++
T Consensus 550 D~D~~~~ddfiGq~~lPv~~Lr~G--------yR~VpL~~~~G~~l~~a~Llv~f~ 597 (599)
T PLN02952 550 EYDMSEKDDFGGQTCLPVSELRPG--------IRSVPLHDKKGEKLKNVRLLMRFI 597 (599)
T ss_pred ecCCCCCCCeEEEEEcchhHhcCC--------ceeEeCcCCCCCCCCCEEEEEEEE
Confidence 99987 899999999999999876 4699998877653 2334444444
No 216
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=99.01 E-value=6.2e-09 Score=112.29 Aligned_cols=241 Identities=21% Similarity=0.210 Sum_probs=151.2
Q ss_pred eEEeeecccCCCCCCcccceEEEEecCCCCCcEEEEEEeccC----CCCCceeEEEEEeccccccccCCCCCCceeEEcc
Q 004208 232 VVLKTTVSAKKTVNPTWNEDLMFVAAEPFDDPLILTVEDKLG----DNKEECLGRLVLPLSKAGKRFLPLPAAAIWYNLE 307 (768)
Q Consensus 232 ~~~~T~~i~~~t~nP~wne~f~f~~~~~~~~~L~i~V~d~d~----~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~ 307 (768)
+..+|.++.. .+||.|.+.|.........+.+++.++|.+. ....+++|+....++++..... ...-+.+.
T Consensus 41 e~~rte~i~~-~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~----~~~~l~~~ 115 (529)
T KOG1327|consen 41 EVGRTEVIRN-VLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSG----LTGPLLLK 115 (529)
T ss_pred cccceeeeec-cCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhh----hhhhhhcc
Confidence 4458888987 9999999999888887778899999998764 3457899999999988773211 11111112
Q ss_pred cCccCccccccccccceEEEEEecCCCcccccCcccccCccccccccCCCCeeeEEEEEEEEecCCCCCCCCCCCCCcCc
Q 004208 308 RNIANGEEKKDVRFASRICLRFSLDGGYHVFDEATNYSSDLRSTMKQLWPPVIGVLELGILSAKELLPMKSRDGRGTTDA 387 (768)
Q Consensus 308 ~~~~~g~~~~~~~~~g~i~l~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~l~v~v~~a~~L~~~~~~~~~g~~dp 387 (768)
.. .....|.|.+.+.-... .....+ -.++|.+|.. +|..+++||
T Consensus 116 ~~--------~~~~~g~iti~aee~~~------------------------~~~~~~-~~~~~~~ld~---kd~f~ksd~ 159 (529)
T KOG1327|consen 116 PG--------KNAGSGTITISAEEDES------------------------DNDVVQ-FSFRAKNLDP---KDFFSKSDP 159 (529)
T ss_pred cC--------ccCCcccEEEEeecccc------------------------cCceee-eeeeeeecCc---ccccccCCc
Confidence 11 11223555554431110 001122 2256888877 588999999
Q ss_pred EEEEEe--cC----eeeeeccccCCCCCccccEEEEEEe-----CCCcEEEEEEEeCCCCCCCCCCCCceEEEEEecccc
Q 004208 388 YCVAKY--AN----KWVRTRTVVDSFDPKWNEQYTWEVY-----DPYTVITLVVFDNCHLHPGGAKDSRIGKVRIRLSTL 456 (768)
Q Consensus 388 yv~v~~--g~----~~~~T~~~~~t~nP~wne~~~~~v~-----~~~~~l~v~v~d~~~~~~~~~~d~~lG~~~i~l~~l 456 (768)
|..++- +. ..++|.+++++++|.|.. |..... ++...+.+.+||.+.. +++++||++..+++++
T Consensus 160 ~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~----~~~~~ig~~~tt~~~~ 234 (529)
T KOG1327|consen 160 YLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSN----GKHDLIGKFQTTLSEL 234 (529)
T ss_pred ceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCCC----CCcCceeEecccHHHh
Confidence 999765 22 238999999999999986 444433 3456899999999984 4889999999999998
Q ss_pred ccCceeeeeEeeeecCCCC----cccccEEEEEEEEEec--cchhhhhhhcC---------------CCCC-CcCCCCCC
Q 004208 457 ETDRIYTHSYPLVALLPNG----VKKMGEVQLAVRFTCS--SFVNLLQTYSQ---------------PLLP-KMHYINPL 514 (768)
Q Consensus 457 ~~~~~~~~~~~L~~~~~~g----~~~~G~i~l~~~~~~~--~~~~~~~~~~~---------------~~~p-~~~~~~p~ 514 (768)
..... ...+++.....+. .+..|.+.+.-.-.-. ++++.+..+++ |..| ..||.+|-
T Consensus 235 ~~~~~-~~~~~~~~~~~~~~~k~~k~~g~~~l~~~~~~~~~sfld~i~gg~~lnf~vgIDfTaSNg~p~~~sSLHyi~p~ 313 (529)
T KOG1327|consen 235 QEPGS-PNQIMLINPKKKAKKKSYKNSGQLILDRFTSLDQYSFLDYIAGGEQLNFTVGIDFTASNGDPRNPSSLHYIDPH 313 (529)
T ss_pred cccCC-cccccccChhhhhhhhcccccceEEehheeehhhhhHHHHHccCceeeeEEEEEEeccCCCCCCCCcceecCCC
Confidence 73110 1223333222111 1123555443332221 34555555544 3344 38899887
Q ss_pred ChhHH
Q 004208 515 SVFQI 519 (768)
Q Consensus 515 ~~~~~ 519 (768)
..++-
T Consensus 314 ~~N~Y 318 (529)
T KOG1327|consen 314 QPNPY 318 (529)
T ss_pred CCCHH
Confidence 76664
No 217
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.99 E-value=1.2e-09 Score=91.94 Aligned_cols=83 Identities=27% Similarity=0.391 Sum_probs=71.5
Q ss_pred EEEEEEEeecCCCCC---CCCCCCcEEEEEECCe-eeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcCCCCCce
Q 004208 41 LYVRIVRARDLQVNQ---VTGTCDPYVEVKIGNY-KGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIVNGDF 116 (768)
Q Consensus 41 L~V~i~~a~~L~~~d---~~g~~dPyv~v~~~~~-~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~~~d~~ 116 (768)
|.|+|..|+++...+ ..+.+||||.+++++. +.||++ +.||.|||+|.|+++. ...+++.|||......-.
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~Vdk--~nEiel~VyDk~~~~~~P 75 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPVEK--NNEEEVIVYDKGGDQPVP 75 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEecC--CcEEEEEEEeCCCCeecc
Confidence 679999999998777 5788999999999995 889987 6999999999999963 789999999997656667
Q ss_pred eEEEEEcCCCCC
Q 004208 117 IGKIKIDMPDIP 128 (768)
Q Consensus 117 lG~~~i~l~~l~ 128 (768)
+|...+.+++|.
T Consensus 76 i~llW~~~sdi~ 87 (109)
T cd08689 76 VGLLWLRLSDIA 87 (109)
T ss_pred eeeehhhHHHHH
Confidence 888888888774
No 218
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.97 E-value=1.3e-10 Score=125.56 Aligned_cols=124 Identities=28% Similarity=0.518 Sum_probs=105.1
Q ss_pred ccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------------e------------------eeEeeeecCCCCC
Q 004208 36 EQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGN-------------Y------------------KGTTIPFEKKLNP 84 (768)
Q Consensus 36 ~~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~-------------~------------------~~~T~~~~~t~nP 84 (768)
.|...|.|.+.+|+||.++|.+|.||||+...+-. + .+-|+++++|+||
T Consensus 111 ~P~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TLnP 190 (1103)
T KOG1328|consen 111 PPSVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTLNP 190 (1103)
T ss_pred CCcHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccCCc
Confidence 35667889999999999999999999999876531 0 1347889999999
Q ss_pred eeeeEEEEEeccCCCceEEEEEEEcCC---------------------------------C----CCceeEEEEEcCCCC
Q 004208 85 EWNQVFAFTKERLQAISVELLVKDKMI---------------------------------V----NGDFIGKIKIDMPDI 127 (768)
Q Consensus 85 ~Wne~f~f~~~~~~~~~L~i~V~d~~~---------------------------------~----~d~~lG~~~i~l~~l 127 (768)
.|+|.|.|.+++.+.+.+.+.+||+|. . .|||+|.+.|+|.++
T Consensus 191 kW~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~Ei 270 (1103)
T KOG1328|consen 191 KWSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAEI 270 (1103)
T ss_pred chhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhcC
Confidence 999999999999999999999999862 1 389999999999999
Q ss_pred CCCCCCCCCCCCeEEEcccCCC-CccceEEEEEEEEccc
Q 004208 128 PKRVPPDSPLAPEWKRLEAKDG-SRARGELMFAIWFGTQ 165 (768)
Q Consensus 128 ~~~~~~~~~~~~~w~~L~~~~~-~~~~G~i~l~i~~~~~ 165 (768)
+.. ...+||.|++.+. +++.|.+.+.+|..+.
T Consensus 271 P~~------Gld~WFkLepRS~~S~VqG~~~LklwLsT~ 303 (1103)
T KOG1328|consen 271 PPD------GLDQWFKLEPRSDKSKVQGQVKLKLWLSTK 303 (1103)
T ss_pred Ccc------hHHHHhccCcccccccccceEEEEEEEeee
Confidence 765 2689999999875 4589999999998764
No 219
>PF11696 DUF3292: Protein of unknown function (DUF3292); InterPro: IPR021709 This eukaryotic family of proteins has no known function.
Probab=98.95 E-value=1.1e-08 Score=112.67 Aligned_cols=73 Identities=21% Similarity=0.453 Sum_probs=64.1
Q ss_pred CCCceeeccchhhhHHHHHH-HHhhHHHHHHhhccccccccchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHh
Q 004208 552 VGSQMWSMRRGKANLARLMR-FLNGFGVAWIWFDQVRRWKNPMTTTFVHVFYVIMVLFPQMILATFFFILFGVVI 625 (768)
Q Consensus 552 ~~~~~fs~~~~~~n~~rl~~-~~~~~~~~~~~~~~i~~W~~p~~t~~~~~~~~~~v~~p~l~lp~~~l~l~~~~~ 625 (768)
++...||...+++|+.||.. ++..+..+.+.+.+|.+|++|.+|..++++|+ ++|+.++++|+++..++.+.+
T Consensus 83 a~~e~FspdkLRa~lERlY~tv~v~~~~~~khi~RLrSW~eprRT~~fc~vYf-~aW~~dll~p~~~~~L~~li~ 156 (642)
T PF11696_consen 83 AEDEEFSPDKLRANLERLYMTVVVGLAAFIKHIARLRSWREPRRTAAFCAVYF-IAWLLDLLVPAFFAFLIALIL 156 (642)
T ss_pred cccccCChHHHHHHhHhheeehHHHHHHHHHHHHHhhhhcccchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 46778999999999999987 66688999999999999999999999888888 888889999998887766655
No 220
>PLN02223 phosphoinositide phospholipase C
Probab=98.94 E-value=1e-08 Score=111.74 Aligned_cols=106 Identities=21% Similarity=0.312 Sum_probs=84.3
Q ss_pred eeEEEEEEEEecCCCCC--CCCCCCCCcCcEEEEEecC-----eeeeeccccCCCCCccccEEEEEEeCCCc-EEEEEEE
Q 004208 360 IGVLELGILSAKELLPM--KSRDGRGTTDAYCVAKYAN-----KWVRTRTVVDSFDPKWNEQYTWEVYDPYT-VITLVVF 431 (768)
Q Consensus 360 ~g~l~v~v~~a~~L~~~--~~~~~~g~~dpyv~v~~g~-----~~~~T~~~~~t~nP~wne~~~~~v~~~~~-~l~v~v~ 431 (768)
...|.|+|+.|+++... +..+....+||||+|.+.| ...+|.+..++.||.|||+|.|.+..|.- .|.|+|+
T Consensus 408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~ 487 (537)
T PLN02223 408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVY 487 (537)
T ss_pred ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEE
Confidence 35699999999998521 1112234689999999944 34678776778999999999999998764 8999999
Q ss_pred eCCCCCCCCCCCCceEEEEEeccccccCceeeeeEeeeecC
Q 004208 432 DNCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPLVALL 472 (768)
Q Consensus 432 d~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~ 472 (768)
|+|..+ +|+++|+..+|++.|..|- +..||.+.+
T Consensus 488 D~D~~~----~ddfiGQ~~LPv~~Lr~Gy---R~VpL~~~~ 521 (537)
T PLN02223 488 DYEVST----ADAFCGQTCLPVSELIEGI---RAVPLYDER 521 (537)
T ss_pred ecCCCC----CCcEEEEEecchHHhcCCc---eeEeccCCC
Confidence 999744 7999999999999999986 677887654
No 221
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.92 E-value=7.9e-09 Score=115.01 Aligned_cols=117 Identities=19% Similarity=0.235 Sum_probs=93.3
Q ss_pred ccEEEEEEEEeecCCCC------CCCCCCCcEEEEEECC-----eeeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEE
Q 004208 38 MEFLYVRIVRARDLQVN------QVTGTCDPYVEVKIGN-----YKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLV 106 (768)
Q Consensus 38 ~~~L~V~i~~a~~L~~~------d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V 106 (768)
...|.|+|+.+.+++.. +.....||||+|.+-| .+.+|++..++.||+|||+|.|.+.-++-..|+|+|
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V 547 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEV 547 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEE
Confidence 35799999999987421 2223579999999865 356899889999999999999998766667899999
Q ss_pred EEcCCC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCCCc-cceEEEEEEEE
Q 004208 107 KDKMIV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGSR-ARGELMFAIWF 162 (768)
Q Consensus 107 ~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~-~~G~i~l~i~~ 162 (768)
+|+|.. +|+|+|+..+++..|..+ -+..+|.+..|.. ....|.+.+++
T Consensus 548 ~d~d~~~~ddfiGQ~~lPv~~Lr~G--------yR~V~L~~~~G~~l~~~~Ll~~f~~ 597 (598)
T PLN02230 548 HEHDINEKDDFGGQTCLPVSEIRQG--------IHAVPLFNRKGVKYSSTRLLMRFEF 597 (598)
T ss_pred EECCCCCCCCEEEEEEcchHHhhCc--------cceEeccCCCcCCCCCCeeEEEEEe
Confidence 999987 999999999999999876 4567998887764 33456665544
No 222
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.91 E-value=4.9e-09 Score=88.29 Aligned_cols=87 Identities=23% Similarity=0.379 Sum_probs=72.9
Q ss_pred EEEEEEEecCCCCCCCCCCCCCcCcEEEEEecCe-eeeeccccCCCCCccccEEEEEEeCCCcEEEEEEEeCCCCCCCCC
Q 004208 363 LELGILSAKELLPMKSRDGRGTTDAYCVAKYANK-WVRTRTVVDSFDPKWNEQYTWEVYDPYTVITLVVFDNCHLHPGGA 441 (768)
Q Consensus 363 l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~~-~~~T~~~~~t~nP~wne~~~~~v~~~~~~l~v~v~d~~~~~~~~~ 441 (768)
|.|+|..|+|+...++....+.+||||.+++++. ++||++ +.||.|||.|.|+| +....+.+.|||... +
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~V-dk~nEiel~VyDk~~-----~ 71 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPV-EKNNEEEVIVYDKGG-----D 71 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEe-cCCcEEEEEEEeCCC-----C
Confidence 5789999999988643225678999999999886 899998 48999999999999 667799999999863 4
Q ss_pred CCCceEEEEEecccccc
Q 004208 442 KDSRIGKVRIRLSTLET 458 (768)
Q Consensus 442 ~d~~lG~~~i~l~~l~~ 458 (768)
..-.||-.-+.++++..
T Consensus 72 ~~~Pi~llW~~~sdi~E 88 (109)
T cd08689 72 QPVPVGLLWLRLSDIAE 88 (109)
T ss_pred eecceeeehhhHHHHHH
Confidence 66789999999998764
No 223
>PLN02952 phosphoinositide phospholipase C
Probab=98.90 E-value=1.6e-08 Score=112.83 Aligned_cols=120 Identities=22% Similarity=0.287 Sum_probs=92.5
Q ss_pred eeEEEEEEEEecCCCCCC---CCCCCCCcCcEEEEEecC-----eeeeeccccCCCCCccccEEEEEEeCCC-cEEEEEE
Q 004208 360 IGVLELGILSAKELLPMK---SRDGRGTTDAYCVAKYAN-----KWVRTRTVVDSFDPKWNEQYTWEVYDPY-TVITLVV 430 (768)
Q Consensus 360 ~g~l~v~v~~a~~L~~~~---~~~~~g~~dpyv~v~~g~-----~~~~T~~~~~t~nP~wne~~~~~v~~~~-~~l~v~v 430 (768)
...|.|.|+.|++++... ..+.....||||+|.+-+ ...+|+++.++.||.|||+|.|.+..|. ..+.|.|
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V 548 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV 548 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence 457999999999985311 012223469999998833 4589999999999999999999998865 4799999
Q ss_pred EeCCCCCCCCCCCCceEEEEEeccccccCceeeeeEeeeecCCCCcccccEEEEEEEEE
Q 004208 431 FDNCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPLVALLPNGVKKMGEVQLAVRFT 489 (768)
Q Consensus 431 ~d~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~ 489 (768)
+|+|..+ .|+++|+..||++.|..|. +|.||.+.. |. ..+..+|-++|.
T Consensus 549 ~D~D~~~----~ddfiGq~~lPv~~Lr~Gy---R~VpL~~~~--G~-~l~~a~Llv~f~ 597 (599)
T PLN02952 549 REYDMSE----KDDFGGQTCLPVSELRPGI---RSVPLHDKK--GE-KLKNVRLLMRFI 597 (599)
T ss_pred EecCCCC----CCCeEEEEEcchhHhcCCc---eeEeCcCCC--CC-CCCCEEEEEEEE
Confidence 9998754 7999999999999999986 688997554 22 335566666663
No 224
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.89 E-value=1.6e-08 Score=112.50 Aligned_cols=115 Identities=19% Similarity=0.241 Sum_probs=91.4
Q ss_pred cEEEEEEEEeecCC----CC--CCCCCCCcEEEEEECC-----eeeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEE
Q 004208 39 EFLYVRIVRARDLQ----VN--QVTGTCDPYVEVKIGN-----YKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVK 107 (768)
Q Consensus 39 ~~L~V~i~~a~~L~----~~--d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~ 107 (768)
..|.|+|+.+.++. .. +.....||||+|.+-| .+.+|+++.++.||+|||+|.|.+..++-..|+|.|+
T Consensus 452 ~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V~ 531 (581)
T PLN02222 452 TTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEVH 531 (581)
T ss_pred ceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEEE
Confidence 57999999998752 11 1234579999999964 4679999999999999999999987665678999999
Q ss_pred EcCCC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCCCc-cceEEEEEEE
Q 004208 108 DKMIV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGSR-ARGELMFAIW 161 (768)
Q Consensus 108 d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~-~~G~i~l~i~ 161 (768)
|+|.. +|+|+|++.+++..|..+ -+.++|.+..|.. ....|.+.+.
T Consensus 532 d~D~~~~ddfigq~~lPv~~Lr~G--------yR~V~L~~~~g~~l~~a~Lfv~~~ 579 (581)
T PLN02222 532 EYDMSEKDDFGGQTCLPVWELSQG--------IRAFPLHSRKGEKYKSVKLLVKVE 579 (581)
T ss_pred ECCCCCCCcEEEEEEcchhhhhCc--------cceEEccCCCcCCCCCeeEEEEEE
Confidence 99987 899999999999999876 4677998887764 3345555554
No 225
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.87 E-value=1e-08 Score=108.37 Aligned_cols=120 Identities=27% Similarity=0.485 Sum_probs=100.4
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEecCeeeeeccccCCCCCccccE-EEEEEeCC---CcEEEEEEEeCCCC
Q 004208 361 GVLELGILSAKELLPMKSRDGRGTTDAYCVAKYANKWVRTRTVVDSFDPKWNEQ-YTWEVYDP---YTVITLVVFDNCHL 436 (768)
Q Consensus 361 g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~~~~~T~~~~~t~nP~wne~-~~~~v~~~---~~~l~v~v~d~~~~ 436 (768)
|.|.|.|..|++|+-|| ......|.||.+++++..+||.+..+++||.||.. |.|+|.|. .+.|.|.+.|+|..
T Consensus 3 gkl~vki~a~r~lpvmd--kasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dty 80 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMD--KASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTY 80 (1169)
T ss_pred CcceeEEEeccCCcccc--cccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEeccccc
Confidence 67899999999999996 34457899999999999999999999999999964 89999863 45899999999997
Q ss_pred CCCCCCCCceEEEEEecccccc----------CceeeeeEeeeecCCCCcccccEEEEEEEEE
Q 004208 437 HPGGAKDSRIGKVRIRLSTLET----------DRIYTHSYPLVALLPNGVKKMGEVQLAVRFT 489 (768)
Q Consensus 437 ~~~~~~d~~lG~~~i~l~~l~~----------~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~ 489 (768)
+ .++.||+|.|++..|.- |..+..|+|+.+.-. | -.|+|.+-+.+.
T Consensus 81 s----andaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtih-g--irgeinvivkvd 136 (1169)
T KOG1031|consen 81 S----ANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIH-G--IRGEINVIVKVD 136 (1169)
T ss_pred c----cccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecc-c--ccceeEEEEEEe
Confidence 6 78999999999998652 457889999976521 3 348888888775
No 226
>PLN02228 Phosphoinositide phospholipase C
Probab=98.86 E-value=2.4e-08 Score=110.79 Aligned_cols=118 Identities=19% Similarity=0.235 Sum_probs=95.1
Q ss_pred cEEEEEEEEeecCCC---C---CCCCCCCcEEEEEECC-----eeeEeeeecCCCCCee-eeEEEEEeccCCCceEEEEE
Q 004208 39 EFLYVRIVRARDLQV---N---QVTGTCDPYVEVKIGN-----YKGTTIPFEKKLNPEW-NQVFAFTKERLQAISVELLV 106 (768)
Q Consensus 39 ~~L~V~i~~a~~L~~---~---d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~W-ne~f~f~~~~~~~~~L~i~V 106 (768)
..|.|+|+.|.+|+. . +.....||||+|.+-| .+.+|+++.++.||+| ||+|.|.+..++-..|+|.|
T Consensus 431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V 510 (567)
T PLN02228 431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKV 510 (567)
T ss_pred ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEEE
Confidence 469999999998731 1 1223479999999865 3578999988899999 99999998766567899999
Q ss_pred EEcCCC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCCCc-cceEEEEEEEEcc
Q 004208 107 KDKMIV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGSR-ARGELMFAIWFGT 164 (768)
Q Consensus 107 ~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~-~~G~i~l~i~~~~ 164 (768)
+|+|.. .|+|+|++.+++..|..+ -+.++|.+..|.. ....|.+.+.+.+
T Consensus 511 ~D~d~~~~d~figq~~lPv~~Lr~G--------YR~VpL~~~~G~~l~~atLfv~~~~~~ 562 (567)
T PLN02228 511 QDYDNDTQNDFAGQTCLPLPELKSG--------VRAVRLHDRAGKAYKNTRLLVSFALDP 562 (567)
T ss_pred EeCCCCCCCCEEEEEEcchhHhhCC--------eeEEEccCCCCCCCCCeEEEEEEEEcC
Confidence 999977 899999999999999765 5678998888765 4466888877653
No 227
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=98.83 E-value=4.9e-08 Score=105.52 Aligned_cols=180 Identities=17% Similarity=0.210 Sum_probs=127.3
Q ss_pred eeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcCCC-----CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEccc
Q 004208 72 KGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIV-----NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEA 146 (768)
Q Consensus 72 ~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~~-----~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 146 (768)
..+|.++.+.+||.|-+.|.+...-...+.|++.++|.+.. ..+|+|++...+..+....... .-+-++.
T Consensus 42 ~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~-----~~l~~~~ 116 (529)
T KOG1327|consen 42 VGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLT-----GPLLLKP 116 (529)
T ss_pred ccceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhh-----hhhhccc
Confidence 45899999999999999998886555578999999998753 7799999999999886543211 1112221
Q ss_pred CCCCccceEEEEEEEEcccCCccccccccccccccccccccccccceeecCCeeEEEEEEEEeecCCCCCCCCCCCcEEE
Q 004208 147 KDGSRARGELMFAIWFGTQADEAFSSAWHSDTAVVSGENIMNCRSKVYVSPKLWYLRVNVIEAQDLVPKQRNRNPEVFIK 226 (768)
Q Consensus 147 ~~~~~~~G~i~l~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~L~V~v~~a~~L~~~d~~~~~dpyV~ 226 (768)
.. ....|+|.+.+.-....+ ....-..+|++|..+|..+++|||..
T Consensus 117 ~~-~~~~g~iti~aee~~~~~---------------------------------~~~~~~~~~~~ld~kd~f~ksd~~l~ 162 (529)
T KOG1327|consen 117 GK-NAGSGTITISAEEDESDN---------------------------------DVVQFSFRAKNLDPKDFFSKSDPYLE 162 (529)
T ss_pred Cc-cCCcccEEEEeecccccC---------------------------------ceeeeeeeeeecCcccccccCCcceE
Confidence 11 113466665542111000 12223345899999999999999998
Q ss_pred EEE--C----CeEEeeecccCCCCCCcccceEEEEe----cCCCCCcEEEEEEeccCCCCCceeEEEEEecccccc
Q 004208 227 AIF--G----NVVLKTTVSAKKTVNPTWNEDLMFVA----AEPFDDPLILTVEDKLGDNKEECLGRLVLPLSKAGK 292 (768)
Q Consensus 227 v~l--g----~~~~~T~~i~~~t~nP~wne~f~f~~----~~~~~~~L~i~V~d~d~~~~d~~lG~~~i~l~~l~~ 292 (768)
+.- + ...++|+++++ +++|.|... .... ....+..+.+.+||++..++++++|++..+++++..
T Consensus 163 ~~~~~~d~s~~~~~~tEv~~n-~l~p~w~~~-~i~~~~l~~~~~~~~~~i~~~d~~~~~~~~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 163 FYKRVDDGSTQMLYRTEVVKN-TLNPQWAPF-SISLQSLCSKDGNRPIQIECYDYDSNGKHDLIGKFQTTLSELQE 236 (529)
T ss_pred EEEecCCCceeeccccceecc-CCCCccccc-ccchhhhcccCCCCceEEEEeccCCCCCcCceeEecccHHHhcc
Confidence 765 1 24679999997 999999874 3222 222356789999999999999999999999998863
No 228
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.81 E-value=1.9e-08 Score=111.65 Aligned_cols=117 Identities=20% Similarity=0.313 Sum_probs=94.4
Q ss_pred cEEEEEEEEeecCCCC-CC---CCCCCcEEEEEECC-----eeeEee-eecCCCCCeeeeEEEEEeccCCCceEEEEEEE
Q 004208 39 EFLYVRIVRARDLQVN-QV---TGTCDPYVEVKIGN-----YKGTTI-PFEKKLNPEWNQVFAFTKERLQAISVELLVKD 108 (768)
Q Consensus 39 ~~L~V~i~~a~~L~~~-d~---~g~~dPyv~v~~~~-----~~~~T~-~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d 108 (768)
-+|.|+|+.+.+++.. +. +..+||||.|++-| .+.+|+ +..++-||.|+|+|.|.+..+.-.-|+|+|+|
T Consensus 616 ~tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d 695 (746)
T KOG0169|consen 616 KTLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHD 695 (746)
T ss_pred ceeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEe
Confidence 3799999999976543 22 35689999999876 357888 55778899999999999887766889999999
Q ss_pred cCCC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCCCc-cceEEEEEEEEc
Q 004208 109 KMIV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGSR-ARGELMFAIWFG 163 (768)
Q Consensus 109 ~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~-~~G~i~l~i~~~ 163 (768)
+|.. +|+|+|+.++++..|..+ -+.++|.+..|.. ...+|.+.+.+.
T Consensus 696 ~d~~~~ddF~GQ~tlP~~~L~~G--------yRhVpL~~~~G~~~~~asLfv~i~~~ 744 (746)
T KOG0169|consen 696 YDYIGKDDFIGQTTLPVSELRQG--------YRHVPLLSREGEALSSASLFVRIAIV 744 (746)
T ss_pred cCCCCcccccceeeccHHHhhCc--------eeeeeecCCCCccccceeEEEEEEEe
Confidence 9999 899999999999999775 4557888877654 456777777654
No 229
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.79 E-value=2.5e-08 Score=109.48 Aligned_cols=118 Identities=21% Similarity=0.249 Sum_probs=94.7
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEECC------eeeEeeeecCCCCCeee-eEEEEEeccCCCceEEEEEEEcCC
Q 004208 39 EFLYVRIVRARDLQVNQVTGTCDPYVEVKIGN------YKGTTIPFEKKLNPEWN-QVFAFTKERLQAISVELLVKDKMI 111 (768)
Q Consensus 39 ~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~------~~~~T~~~~~t~nP~Wn-e~f~f~~~~~~~~~L~i~V~d~~~ 111 (768)
-.|.|+|+.|+.|+. ...|.+.|+|+|.+-| ..++|.++.+++||+|| |+|.|.+.+++-..|+|.|+|.|.
T Consensus 1065 ~~lsv~vigaRHL~k-~gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDm 1143 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPK-LGRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDM 1143 (1267)
T ss_pred eEEEEEEeecccccc-CCCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEecccc
Confidence 469999999999984 3456778999999876 24566677999999999 999999999988999999999999
Q ss_pred C-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCCCc-cceEEEEEEEEccc
Q 004208 112 V-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGSR-ARGELMFAIWFGTQ 165 (768)
Q Consensus 112 ~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~-~~G~i~l~i~~~~~ 165 (768)
+ ...|||++++++..+..+ -+-.+|.+.-++. ...+|++.+...+.
T Consensus 1144 fs~~~FiaqA~yPv~~ik~G--------fRsVpLkN~ySEdlELaSLLv~i~m~~~ 1191 (1267)
T KOG1264|consen 1144 FSDPNFLAQATYPVKAIKSG--------FRSVPLKNGYSEDLELASLLVFIEMRPV 1191 (1267)
T ss_pred cCCcceeeeeecchhhhhcc--------ceeeecccCchhhhhhhhheeeeEeccc
Confidence 9 667999999999998765 3456777665443 45667777666543
No 230
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.79 E-value=1.1e-08 Score=108.10 Aligned_cols=124 Identities=28% Similarity=0.387 Sum_probs=103.0
Q ss_pred cEEEEEEEEeecCCCCCC-CCCCCcEEEEEECCeeeEeeeecCCCCCeee-eEEEEEec--cCCCceEEEEEEEcCCC-C
Q 004208 39 EFLYVRIVRARDLQVNQV-TGTCDPYVEVKIGNYKGTTIPFEKKLNPEWN-QVFAFTKE--RLQAISVELLVKDKMIV-N 113 (768)
Q Consensus 39 ~~L~V~i~~a~~L~~~d~-~g~~dPyv~v~~~~~~~~T~~~~~t~nP~Wn-e~f~f~~~--~~~~~~L~i~V~d~~~~-~ 113 (768)
|.|.|+|+.|++|+.+|. +...|.||++++++..++|.+..+++||.|| +.|.|.+. +++...|.|.+.|+|.. .
T Consensus 3 gkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dtysa 82 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTYSA 82 (1169)
T ss_pred CcceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEeccccccc
Confidence 678999999999999986 4568999999999999999999999999999 45788874 67889999999999999 9
Q ss_pred CceeEEEEEcCCCCCCCCCC-----CCCCCCeEEEcccCCCCccceEEEEEEEEc
Q 004208 114 GDFIGKIKIDMPDIPKRVPP-----DSPLAPEWKRLEAKDGSRARGELMFAIWFG 163 (768)
Q Consensus 114 d~~lG~~~i~l~~l~~~~~~-----~~~~~~~w~~L~~~~~~~~~G~i~l~i~~~ 163 (768)
+|-||++.|++..|...... ..+....|+++.+.-.+ .+|+|.+-+.+.
T Consensus 83 ndaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtihg-irgeinvivkvd 136 (1169)
T KOG1031|consen 83 NDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIHG-IRGEINVIVKVD 136 (1169)
T ss_pred ccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceeccc-ccceeEEEEEEe
Confidence 99999999999988544221 12445689999886533 679998876653
No 231
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.75 E-value=9.5e-08 Score=106.52 Aligned_cols=106 Identities=18% Similarity=0.256 Sum_probs=84.2
Q ss_pred eeEEEEEEEEecCCCCCCC---CCCCCCcCcEEEEEecC-----eeeeeccccCCCCCccccEEEEEEeCCC-cEEEEEE
Q 004208 360 IGVLELGILSAKELLPMKS---RDGRGTTDAYCVAKYAN-----KWVRTRTVVDSFDPKWNEQYTWEVYDPY-TVITLVV 430 (768)
Q Consensus 360 ~g~l~v~v~~a~~L~~~~~---~~~~g~~dpyv~v~~g~-----~~~~T~~~~~t~nP~wne~~~~~v~~~~-~~l~v~v 430 (768)
...|.|.|+.++++..... .+.....||||+|.+-+ ...+|++..++.||.|||+|+|.+..|. ..|.|+|
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V 547 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEV 547 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEE
Confidence 3569999999998753211 12234579999999932 3478998888999999999999999875 5899999
Q ss_pred EeCCCCCCCCCCCCceEEEEEeccccccCceeeeeEeeeecC
Q 004208 431 FDNCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPLVALL 472 (768)
Q Consensus 431 ~d~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~ 472 (768)
+|+|..+ +|+++|+..||++.|..|- +..||.+..
T Consensus 548 ~d~d~~~----~ddfiGQ~~lPv~~Lr~Gy---R~V~L~~~~ 582 (598)
T PLN02230 548 HEHDINE----KDDFGGQTCLPVSEIRQGI---HAVPLFNRK 582 (598)
T ss_pred EECCCCC----CCCEEEEEEcchHHhhCcc---ceEeccCCC
Confidence 9998743 8999999999999999985 567886654
No 232
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.74 E-value=1.3e-07 Score=105.40 Aligned_cols=106 Identities=20% Similarity=0.260 Sum_probs=84.0
Q ss_pred eeEEEEEEEEecCCCC--CC-CCCCCCCcCcEEEEEecC-----eeeeeccccCCCCCccccEEEEEEeCCC-cEEEEEE
Q 004208 360 IGVLELGILSAKELLP--MK-SRDGRGTTDAYCVAKYAN-----KWVRTRTVVDSFDPKWNEQYTWEVYDPY-TVITLVV 430 (768)
Q Consensus 360 ~g~l~v~v~~a~~L~~--~~-~~~~~g~~dpyv~v~~g~-----~~~~T~~~~~t~nP~wne~~~~~v~~~~-~~l~v~v 430 (768)
...|+|.|+.+++++. .+ ..+.....||||+|.+-+ ...||+++.++.||.|||.|+|.+..|. ..|.+.|
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V 530 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEV 530 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEE
Confidence 3579999999998531 11 112334679999999832 4589999999999999999999998875 5899999
Q ss_pred EeCCCCCCCCCCCCceEEEEEeccccccCceeeeeEeeeecC
Q 004208 431 FDNCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPLVALL 472 (768)
Q Consensus 431 ~d~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~ 472 (768)
+|+|..+ .|+++|+..||++.|..|- +..||.+..
T Consensus 531 ~d~D~~~----~ddfigq~~lPv~~Lr~Gy---R~V~L~~~~ 565 (581)
T PLN02222 531 HEYDMSE----KDDFGGQTCLPVWELSQGI---RAFPLHSRK 565 (581)
T ss_pred EECCCCC----CCcEEEEEEcchhhhhCcc---ceEEccCCC
Confidence 9998743 7999999999999999985 567886654
No 233
>PLN02228 Phosphoinositide phospholipase C
Probab=98.73 E-value=1.3e-07 Score=105.09 Aligned_cols=122 Identities=17% Similarity=0.218 Sum_probs=91.7
Q ss_pred eeEEEEEEEEecCCCC---CCCCCCCCCcCcEEEEEecC-----eeeeeccccCCCCCcc-ccEEEEEEeCCC-cEEEEE
Q 004208 360 IGVLELGILSAKELLP---MKSRDGRGTTDAYCVAKYAN-----KWVRTRTVVDSFDPKW-NEQYTWEVYDPY-TVITLV 429 (768)
Q Consensus 360 ~g~l~v~v~~a~~L~~---~~~~~~~g~~dpyv~v~~g~-----~~~~T~~~~~t~nP~w-ne~~~~~v~~~~-~~l~v~ 429 (768)
...|+|+|++|++|+. .+..+.....||||+|.+-+ ..+||+++.++.||.| ||.|.|.+..|. ..|.+.
T Consensus 430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~ 509 (567)
T PLN02228 430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFK 509 (567)
T ss_pred CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEE
Confidence 3469999999999732 11112234589999999832 3479999988899999 999999998875 589999
Q ss_pred EEeCCCCCCCCCCCCceEEEEEeccccccCceeeeeEeeeecCCCCcccccEEEEEEEEE
Q 004208 430 VFDNCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPLVALLPNGVKKMGEVQLAVRFT 489 (768)
Q Consensus 430 v~d~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~ 489 (768)
|+|+|..+ .|+++|+..||++.|..|- +..||.+...... ...+|-+++.+.
T Consensus 510 V~D~d~~~----~d~figq~~lPv~~Lr~GY---R~VpL~~~~G~~l-~~atLfv~~~~~ 561 (567)
T PLN02228 510 VQDYDNDT----QNDFAGQTCLPLPELKSGV---RAVRLHDRAGKAY-KNTRLLVSFALD 561 (567)
T ss_pred EEeCCCCC----CCCEEEEEEcchhHhhCCe---eEEEccCCCCCCC-CCeEEEEEEEEc
Confidence 99998744 7899999999999999885 5678866543222 235577777664
No 234
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.69 E-value=5.9e-09 Score=113.14 Aligned_cols=100 Identities=21% Similarity=0.398 Sum_probs=85.8
Q ss_pred ccccccccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-------eeEeeeecCCCCCeeeeEEEEEecc----
Q 004208 28 LTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGNY-------KGTTIPFEKKLNPEWNQVFAFTKER---- 96 (768)
Q Consensus 28 ~~~~~~~~~~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~~-------~~~T~~~~~t~nP~Wne~f~f~~~~---- 96 (768)
+..+|..- ...|.|.|+.|+++.+-|.+|.|||||+|.+++. ..+|+++++|+||+|+|+|+|.+..
T Consensus 938 vr~~y~~n--~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~ 1015 (1103)
T KOG1328|consen 938 VRAYYNGN--AQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCS 1015 (1103)
T ss_pred EEEEeecc--ccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccc
Confidence 33445543 3579999999999999999999999999999972 4699999999999999999999753
Q ss_pred CCCceEEEEEEEcCCC-CCceeEEEEEcCCCCCC
Q 004208 97 LQAISVELLVKDKMIV-NGDFIGKIKIDMPDIPK 129 (768)
Q Consensus 97 ~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~ 129 (768)
.....|-|+|+|+|.. .+||-|++-+.|.++..
T Consensus 1016 te~Am~~FTVMDHD~L~sNDFaGEA~L~Lg~vpG 1049 (1103)
T KOG1328|consen 1016 TETAMLHFTVMDHDYLRSNDFAGEAFLELGDVPG 1049 (1103)
T ss_pred cccceEEEEeeccceecccccchHHHHhhCCCCC
Confidence 2257899999999999 99999999999999864
No 235
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=98.59 E-value=4.2e-08 Score=111.92 Aligned_cols=123 Identities=24% Similarity=0.368 Sum_probs=103.6
Q ss_pred CCCCCCcccCCCcccccccccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeEeeeecCCCCCeeeeE
Q 004208 15 PKIGGGRVSGRERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGN-----YKGTTIPFEKKLNPEWNQV 89 (768)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~Wne~ 89 (768)
|+-++|.++|..+++..|. .+.|+|-|.-|++|.--..+...||||+.++.+ -|.||+++++|.||.|||.
T Consensus 1504 ps~~p~~iggqV~LsIsY~----~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~ 1579 (1639)
T KOG0905|consen 1504 PSRNPGEIGGQVKLSISYN----NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEM 1579 (1639)
T ss_pred CCCCccccCceEEEEEEEc----CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhh
Confidence 4445677778899999998 579999999999996555466789999999976 3679999999999999999
Q ss_pred EEEE---eccCCCceEEEEEEEcCCC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEccc
Q 004208 90 FAFT---KERLQAISVELLVKDKMIV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEA 146 (768)
Q Consensus 90 f~f~---~~~~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 146 (768)
..+. .+.++...|.+.||..+.. .+.++|.+.++|.++...++ ...||.|..
T Consensus 1580 LvY~g~p~~~l~qReLQ~sVls~~~~~en~~lg~v~i~L~~~~l~kE-----~~~Wy~lg~ 1635 (1639)
T KOG0905|consen 1580 LVYDGFPKEILQQRELQVSVLSNGGLLENVFLGGVNIPLLKVDLLKE-----SVGWYNLGA 1635 (1639)
T ss_pred eeecCCchhhhhhheeeeeeecccceeeeeeeeeeecchhhcchhhh-----hcceeeccc
Confidence 9887 4566678999999999988 99999999999999877643 358999865
No 236
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.57 E-value=4.4e-07 Score=101.05 Aligned_cols=119 Identities=21% Similarity=0.353 Sum_probs=90.0
Q ss_pred EEEEEEEEecCCCCCCCCC-CCCCcCcEEEEEecC-----eeeeeccc-cCCCCCccccEEEEEEeCCC-cEEEEEEEeC
Q 004208 362 VLELGILSAKELLPMKSRD-GRGTTDAYCVAKYAN-----KWVRTRTV-VDSFDPKWNEQYTWEVYDPY-TVITLVVFDN 433 (768)
Q Consensus 362 ~l~v~v~~a~~L~~~~~~~-~~g~~dpyv~v~~g~-----~~~~T~~~-~~t~nP~wne~~~~~v~~~~-~~l~v~v~d~ 433 (768)
.|.|.|++++|+....... .+..+||||.|+.-| ...+|+++ .++-||.|+|+|+|.+..|. +-|.+.|+|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~ 696 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY 696 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence 6999999999876642111 234689999999844 34899966 45789999999999999886 5899999999
Q ss_pred CCCCCCCCCCCceEEEEEeccccccCceeeeeEeeeecCCCCcccccEEEEEEEE
Q 004208 434 CHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPLVALLPNGVKKMGEVQLAVRF 488 (768)
Q Consensus 434 ~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 488 (768)
|..+ +|+|+|+..||++.|..|- +-.||.+.++... ..-+|-+++.+
T Consensus 697 d~~~----~ddF~GQ~tlP~~~L~~Gy---RhVpL~~~~G~~~-~~asLfv~i~~ 743 (746)
T KOG0169|consen 697 DYIG----KDDFIGQTTLPVSELRQGY---RHVPLLSREGEAL-SSASLFVRIAI 743 (746)
T ss_pred CCCC----cccccceeeccHHHhhCce---eeeeecCCCCccc-cceeEEEEEEE
Confidence 9854 8999999999999999985 4577766542111 22455555554
No 237
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=98.48 E-value=2e-07 Score=80.99 Aligned_cols=106 Identities=27% Similarity=0.361 Sum_probs=80.2
Q ss_pred EEEEEEEecCCCCCCCC------C----CCCCcCcEEEEEe----cCeeeeeccccCCCCCccccEEEEEEe--------
Q 004208 363 LELGILSAKELLPMKSR------D----GRGTTDAYCVAKY----ANKWVRTRTVVDSFDPKWNEQYTWEVY-------- 420 (768)
Q Consensus 363 l~v~v~~a~~L~~~~~~------~----~~g~~dpyv~v~~----g~~~~~T~~~~~t~nP~wne~~~~~v~-------- 420 (768)
|.|.|++|.||+++-.+ + ..-.-++||++.+ +++..+|+++.++..|.|+..++|++.
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 46889999999854210 1 1123688999986 457899999999999999999999876
Q ss_pred CC--------CcEEEEEEEeCCCCCCC------CCCCCceEEEEEeccccccCc-eeeeeEee
Q 004208 421 DP--------YTVITLVVFDNCHLHPG------GAKDSRIGKVRIRLSTLETDR-IYTHSYPL 468 (768)
Q Consensus 421 ~~--------~~~l~v~v~d~~~~~~~------~~~d~~lG~~~i~l~~l~~~~-~~~~~~~L 468 (768)
+. ...+.++||..+.-+.+ ..+|-.||.+.||+.+|...+ .+++|||+
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 11 24899999998764322 246779999999999988764 57899985
No 238
>PLN02352 phospholipase D epsilon
Probab=98.45 E-value=1.3e-06 Score=99.35 Aligned_cols=119 Identities=20% Similarity=0.280 Sum_probs=90.4
Q ss_pred eeEEEEEEEEecCCCCCCC-CCC-CCCcCcEEEEEecCee-eeeccccCCCCCccccEEEEEEeCCC-cEEEEEEEeCCC
Q 004208 360 IGVLELGILSAKELLPMKS-RDG-RGTTDAYCVAKYANKW-VRTRTVVDSFDPKWNEQYTWEVYDPY-TVITLVVFDNCH 435 (768)
Q Consensus 360 ~g~l~v~v~~a~~L~~~~~-~~~-~g~~dpyv~v~~g~~~-~~T~~~~~t~nP~wne~~~~~v~~~~-~~l~v~v~d~~~ 435 (768)
-|.|.++|++|+-+...-. ... ....|||+.|.+++.+ .|| .+..||.|+|.|.+++..+. ..+++.|.|.
T Consensus 9 hg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~~-- 83 (758)
T PLN02352 9 HGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKTK-- 83 (758)
T ss_pred ccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEecC--
Confidence 4779999999973322100 001 1123999999998755 688 55669999999999999987 6899999983
Q ss_pred CCCCCCCCCceEEEEEeccccccCce-eeeeEeeeecCCCCcccccEEEEEEEEEec
Q 004208 436 LHPGGAKDSRIGKVRIRLSTLETDRI-YTHSYPLVALLPNGVKKMGEVQLAVRFTCS 491 (768)
Q Consensus 436 ~~~~~~~d~~lG~~~i~l~~l~~~~~-~~~~~~L~~~~~~g~~~~G~i~l~~~~~~~ 491 (768)
..+||.+.||+.++..|.. +++|+|+.+...+-.+. .+|+++++|...
T Consensus 84 -------~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~ 132 (758)
T PLN02352 84 -------CSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPE-LKLRFMLWFRPA 132 (758)
T ss_pred -------CeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCC-CEEEEEEEEEEh
Confidence 4599999999999999865 89999998875332222 589999999865
No 239
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.37 E-value=1.7e-06 Score=95.53 Aligned_cols=99 Identities=20% Similarity=0.419 Sum_probs=81.0
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEec-----Ceeeeec-cccCCCCCccc-cEEEEEEeCCC-cEEEEEEEe
Q 004208 361 GVLELGILSAKELLPMKSRDGRGTTDAYCVAKYA-----NKWVRTR-TVVDSFDPKWN-EQYTWEVYDPY-TVITLVVFD 432 (768)
Q Consensus 361 g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g-----~~~~~T~-~~~~t~nP~wn-e~~~~~v~~~~-~~l~v~v~d 432 (768)
-.|.|.|+.|+.|+. .+.|-+.|||.|++- ..+++|. ++.+.+||.|| |.|+|.|.+|. .-|.+.|+|
T Consensus 1065 ~~lsv~vigaRHL~k----~gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~e 1140 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPK----LGRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYE 1140 (1267)
T ss_pred eEEEEEEeecccccc----CCCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEec
Confidence 358899999999986 577788899999883 2345555 44678999999 99999999985 589999999
Q ss_pred CCCCCCCCCCCCceEEEEEeccccccCceeeeeEeeee
Q 004208 433 NCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPLVA 470 (768)
Q Consensus 433 ~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 470 (768)
+|.++ ...+||++..|+..+..|- +..||++
T Consensus 1141 eDmfs----~~~FiaqA~yPv~~ik~Gf---RsVpLkN 1171 (1267)
T KOG1264|consen 1141 EDMFS----DPNFLAQATYPVKAIKSGF---RSVPLKN 1171 (1267)
T ss_pred ccccC----Ccceeeeeecchhhhhccc---eeeeccc
Confidence 99987 4559999999999998874 5567654
No 240
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=98.33 E-value=0.00012 Score=76.84 Aligned_cols=243 Identities=15% Similarity=0.164 Sum_probs=157.5
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeeecCCCCCeeeeEEEEEec-------cCCCceEEEEEEEcCCC-
Q 004208 41 LYVRIVRARDLQVNQVTGTCDPYVEVKIGNYKGTTIPFEKKLNPEWNQVFAFTKE-------RLQAISVELLVKDKMIV- 112 (768)
Q Consensus 41 L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~Wne~f~f~~~-------~~~~~~L~i~V~d~~~~- 112 (768)
+.|+|++|+|.+... .-.-.+..+++++...|..+..+..|.||....+..+ ..+...|++++|..|..
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~ 78 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGST 78 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCC
Confidence 679999999998663 2355788999999999999999999999999999854 34568999999999843
Q ss_pred -CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCC--CCccceEEEEEEEEcccCCcccccc--------ccccccc-
Q 004208 113 -NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKD--GSRARGELMFAIWFGTQADEAFSSA--------WHSDTAV- 180 (768)
Q Consensus 113 -~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~--~~~~~G~i~l~i~~~~~~d~~~~~~--------~~~~~~~- 180 (768)
..+.+|.+.++|.........+....+.||+|-..+ ..+.+-+|.+.+.+.+......... ...+...
T Consensus 79 ~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~~~~~~~~~~~~~~~~p~~~~~~~ 158 (340)
T PF12416_consen 79 GKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDSKPQTPDFESFKAKPAPPRQGHVP 158 (340)
T ss_pred CcceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEEeccccccCCccccccccCCCcccCCCc
Confidence 889999999999988222222334678999998773 3345678888888765443210000 0000000
Q ss_pred -----ccccccc--ccc-ccee------ecCCeeEEEEEEEEeecCCCCCC------CCCCCcEEEEEECCeEEeeeccc
Q 004208 181 -----VSGENIM--NCR-SKVY------VSPKLWYLRVNVIEAQDLVPKQR------NRNPEVFIKAIFGNVVLKTTVSA 240 (768)
Q Consensus 181 -----~~~~~~~--~~~-~~~~------~~p~~~~L~V~v~~a~~L~~~d~------~~~~dpyV~v~lg~~~~~T~~i~ 240 (768)
.+++.+. ... ...+ .......|.|++..|.+|...-. .+...-|....+-+....|..-.
T Consensus 159 ~~~~~~~~~~l~~~l~~~eg~lQIGp~~~~~d~FvLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~YsllGn~Vt~~~F~ 238 (340)
T PF12416_consen 159 PPNSLLSPATLIPVLLEDEGLLQIGPPDLCCDLFVLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYYSLLGNDVTTEPFK 238 (340)
T ss_pred ccccccCccceeEEEccCCceEeeCCchhcCceEEEEEehhhhhhHHhhccccccccCCCccEEEEEEecCcEeEeeecc
Confidence 0000000 000 0000 01235689999999999876521 12345566777755566666666
Q ss_pred CCCCCCccc--ceEEEEecCC---------CCCcEEEEEEeccCCCCCceeEEEEEecccccc
Q 004208 241 KKTVNPTWN--EDLMFVAAEP---------FDDPLILTVEDKLGDNKEECLGRLVLPLSKAGK 292 (768)
Q Consensus 241 ~~t~nP~wn--e~f~f~~~~~---------~~~~L~i~V~d~d~~~~d~~lG~~~i~l~~l~~ 292 (768)
. ..+|.|. +.-.+.+... ....|.|.++. .+..||.+.|++..+..
T Consensus 239 ~-l~~~~f~~er~s~vRirSS~~~L~~yf~~~~~L~I~Lc~-----g~~~Lg~~~v~l~~Ll~ 295 (340)
T PF12416_consen 239 S-LSSPSFPPERASGVRIRSSLRVLRRYFQQIPKLQIHLCC-----GNQSLGSTSVPLQPLLP 295 (340)
T ss_pred c-cCCCCcCeeeeeEEeecccHHHHHHHHhhCCCeEEEEee-----CCcEEEEEEEEhhhccC
Confidence 5 6777663 2222433221 23467777776 46689999999999863
No 241
>PLN02352 phospholipase D epsilon
Probab=98.32 E-value=3.4e-06 Score=96.07 Aligned_cols=118 Identities=20% Similarity=0.328 Sum_probs=91.5
Q ss_pred cEEEEEEEEeecCCCC----CC-CCCCCcEEEEEECCe-eeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcCCC
Q 004208 39 EFLYVRIVRARDLQVN----QV-TGTCDPYVEVKIGNY-KGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIV 112 (768)
Q Consensus 39 ~~L~V~i~~a~~L~~~----d~-~g~~dPyv~v~~~~~-~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~~ 112 (768)
|.|.++|.+|+-+... +. ....||||.|.+++. ..|| .+..||+|||.|.+.+.......++|.|.|
T Consensus 10 g~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~---- 82 (758)
T PLN02352 10 GTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT---- 82 (758)
T ss_pred cceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec----
Confidence 7899999999843221 11 122399999999985 4688 566799999999999988754689999998
Q ss_pred CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCCCccce-EEEEEEEEcccCC
Q 004208 113 NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGSRARG-ELMFAIWFGTQAD 167 (768)
Q Consensus 113 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G-~i~l~i~~~~~~d 167 (768)
+..+||.+.+++.++..+.. ....|+++.+..++...| .|.++++|.+...
T Consensus 83 ~~~~ig~~~~p~~~~~~g~~----~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 134 (758)
T PLN02352 83 KCSILGRFHIQAHQIVTEAS----FINGFFPLIMENGKPNPELKLRFMLWFRPAEL 134 (758)
T ss_pred CCeEEEEEEEEHHHhhCCCc----ccceEEEcccCCCCCCCCCEEEEEEEEEEhhh
Confidence 36899999999999987632 258999999887654445 8889999876543
No 242
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=98.19 E-value=1.9e-06 Score=98.82 Aligned_cols=105 Identities=29% Similarity=0.340 Sum_probs=86.0
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEEeeecccCCCCCCcccceEEEE---ecCCCCCcEEEEEEec
Q 004208 200 WYLRVNVIEAQDLVPKQRNRNPEVFIKAIFG-----NVVLKTTVSAKKTVNPTWNEDLMFV---AAEPFDDPLILTVEDK 271 (768)
Q Consensus 200 ~~L~V~v~~a~~L~~~d~~~~~dpyV~v~lg-----~~~~~T~~i~~~t~nP~wne~f~f~---~~~~~~~~L~i~V~d~ 271 (768)
+.|.|.|.-+++|+....+..+||||+.++- ..+.||+++++ |.||.|||...+. ........|+++||..
T Consensus 1524 ~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrk-t~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~ 1602 (1639)
T KOG0905|consen 1524 GTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRK-TRNPTFNEMLVYDGFPKEILQQRELQVSVLSN 1602 (1639)
T ss_pred ceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccc-cCCCchhhheeecCCchhhhhhheeeeeeecc
Confidence 5699999999999877777789999999993 24779999997 9999999998876 2223456899999999
Q ss_pred cCCCCCceeEEEEEeccccccccCCCCCCceeEEcccC
Q 004208 272 LGDNKEECLGRLVLPLSKAGKRFLPLPAAAIWYNLERN 309 (768)
Q Consensus 272 d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~~ 309 (768)
+....+.++|.+.|+|.++... .....||+|...
T Consensus 1603 ~~~~en~~lg~v~i~L~~~~l~----kE~~~Wy~lg~~ 1636 (1639)
T KOG0905|consen 1603 GGLLENVFLGGVNIPLLKVDLL----KESVGWYNLGAC 1636 (1639)
T ss_pred cceeeeeeeeeeecchhhcchh----hhhcceeecccc
Confidence 8888899999999999987643 224489998754
No 243
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=98.07 E-value=0.00068 Score=71.34 Aligned_cols=237 Identities=15% Similarity=0.200 Sum_probs=156.7
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEeeecccCCCCCCcccceEEEEecC-------CCCCcEEEEEEecc-C
Q 004208 202 LRVNVIEAQDLVPKQRNRNPEVFIKAIFGNVVLKTTVSAKKTVNPTWNEDLMFVAAE-------PFDDPLILTVEDKL-G 273 (768)
Q Consensus 202 L~V~v~~a~~L~~~d~~~~~dpyV~v~lg~~~~~T~~i~~~t~nP~wne~f~f~~~~-------~~~~~L~i~V~d~d-~ 273 (768)
+.|.|++|++.+... .-...|..++.++...|..+.. +..|.||..+...+.. .+...|++++|..| .
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~ng~~l~TDpv~~-~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~ 77 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKFNGESLETDPVPH-TESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGS 77 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEeCCceeeecCCCC-CCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCC
Confidence 678999999998652 3466788999999999999988 9999999999887642 24568999999877 5
Q ss_pred CCCCceeEEEEEecccc---ccccCCCCCCceeEEcccCccCccccccccccceEEEEEecCCCcccccCc---------
Q 004208 274 DNKEECLGRLVLPLSKA---GKRFLPLPAAAIWYNLERNIANGEEKKDVRFASRICLRFSLDGGYHVFDEA--------- 341 (768)
Q Consensus 274 ~~~d~~lG~~~i~l~~l---~~~~~~~~~~~~w~~L~~~~~~g~~~~~~~~~g~i~l~v~~~~~~~~~~~~--------- 341 (768)
.+..+.+|.+.++|... .. .+.....+||+|.+...+ -.+..-++.+.++++.........
T Consensus 78 ~~~re~iGyv~LdLRsa~~~~~--~~~~~~~~W~~LL~~~~~-----y~~~KPEl~l~l~ie~~~~~~~~~~~~~~~~~~ 150 (340)
T PF12416_consen 78 TGKRESIGYVVLDLRSAVVPQE--KNQKQKPKWYKLLSSSSK-----YKKHKPELLLSLSIEDDSKPQTPDFESFKAKPA 150 (340)
T ss_pred CCcceeccEEEEEccccccccc--cccccCCCeeEccccccc-----cccCCccEEEEEEEeccccccCCccccccccCC
Confidence 56778999999999987 32 223578899999887321 112334677777765433210000
Q ss_pred ccccC-------ccccc--------cccCC-------CCeeeEEEEEEEEecCCCCCCCC---CCCCCcCcEEEEEecCe
Q 004208 342 TNYSS-------DLRST--------MKQLW-------PPVIGVLELGILSAKELLPMKSR---DGRGTTDAYCVAKYANK 396 (768)
Q Consensus 342 ~~~~~-------~~~~~--------~~~l~-------~~~~g~l~v~v~~a~~L~~~~~~---~~~g~~dpyv~v~~g~~ 396 (768)
....+ ...+. ...+. ..+...|.|+|-.|+||..+.-. +..+.+..|....+-+.
T Consensus 151 p~~~~~~~~~~~~~~~~~l~~~l~~~eg~lQIGp~~~~~d~FvLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~YsllGn 230 (340)
T PF12416_consen 151 PPRQGHVPPPNSLLSPATLIPVLLEDEGLLQIGPPDLCCDLFVLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYYSLLGN 230 (340)
T ss_pred CcccCCCcccccccCccceeEEEccCCceEeeCCchhcCceEEEEEehhhhhhHHhhccccccccCCCccEEEEEEecCc
Confidence 00000 00000 00000 13456788999999998765111 11133566777777666
Q ss_pred eeeeccccCCCCCccc--cEEEEEEeCC----------CcEEEEEEEeCCCCCCCCCCCCceEEEEEecccccc
Q 004208 397 WVRTRTVVDSFDPKWN--EQYTWEVYDP----------YTVITLVVFDNCHLHPGGAKDSRIGKVRIRLSTLET 458 (768)
Q Consensus 397 ~~~T~~~~~t~nP~wn--e~~~~~v~~~----------~~~l~v~v~d~~~~~~~~~~d~~lG~~~i~l~~l~~ 458 (768)
.+.|...+...+|.|. +...+.++.. ...|.|.++.+ +..||.+.|++..+.+
T Consensus 231 ~Vt~~~F~~l~~~~f~~er~s~vRirSS~~~L~~yf~~~~~L~I~Lc~g---------~~~Lg~~~v~l~~Ll~ 295 (340)
T PF12416_consen 231 DVTTEPFKSLSSPSFPPERASGVRIRSSLRVLRRYFQQIPKLQIHLCCG---------NQSLGSTSVPLQPLLP 295 (340)
T ss_pred EeEeeeccccCCCCcCeeeeeEEeecccHHHHHHHHhhCCCeEEEEeeC---------CcEEEEEEEEhhhccC
Confidence 7777777777788764 3333766631 24788888874 4489999999999864
No 244
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=97.90 E-value=9.7e-06 Score=70.65 Aligned_cols=100 Identities=23% Similarity=0.330 Sum_probs=76.8
Q ss_pred EEEEEEEeecCCCCC-------------CCCCCCcEEEEEEC----CeeeEeeeecCCCCCeeeeEEEEEec--------
Q 004208 41 LYVRIVRARDLQVNQ-------------VTGTCDPYVEVKIG----NYKGTTIPFEKKLNPEWNQVFAFTKE-------- 95 (768)
Q Consensus 41 L~V~i~~a~~L~~~d-------------~~g~~dPyv~v~~~----~~~~~T~~~~~t~nP~Wne~f~f~~~-------- 95 (768)
|.|.|++|.||.+.. ..-..|+||++.+. ++..+|+++.++-.|+||..++|...
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 467888888885421 12246899999964 36789999999999999999999843
Q ss_pred -------cCCCceEEEEEEEcCCC-----------CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEc
Q 004208 96 -------RLQAISVELLVKDKMIV-----------NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRL 144 (768)
Q Consensus 96 -------~~~~~~L~i~V~d~~~~-----------~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 144 (768)
-++...+.++||+.+.. +|-.||.+.|++.+|.... +....||++
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~r----sGitGW~pi 143 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKR----SGITGWYPI 143 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcc----cCccccccC
Confidence 23457899999997642 6678999999999997764 346789875
No 245
>PLN02964 phosphatidylserine decarboxylase
Probab=97.64 E-value=7e-05 Score=85.05 Aligned_cols=86 Identities=16% Similarity=0.197 Sum_probs=74.7
Q ss_pred ccEEEEEEEEeecCCCCCCCCCCCcE-EEEEECCeeeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcCCC-CCc
Q 004208 38 MEFLYVRIVRARDLQVNQVTGTCDPY-VEVKIGNYKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIV-NGD 115 (768)
Q Consensus 38 ~~~L~V~i~~a~~L~~~d~~g~~dPy-v~v~~~~~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~~-~d~ 115 (768)
.|...+++++|+ ++. .||| +.+.+|.+.++|.+.++|.||+||+...|.+.........|.|||.+.+ .++
T Consensus 53 ~~~~~~~~~~~~----~~~---~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~n~ 125 (644)
T PLN02964 53 SGIALLTLVGAE----MKF---KDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRLSKNT 125 (644)
T ss_pred cCeEEEEeehhh----hcc---CCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCCCHHH
Confidence 489999999997 232 4776 6678888999999999999999999999999876667789999999999 999
Q ss_pred eeEEEEEcCCCCCCC
Q 004208 116 FIGKIKIDMPDIPKR 130 (768)
Q Consensus 116 ~lG~~~i~l~~l~~~ 130 (768)
.+|.|++++.++...
T Consensus 126 lv~~~e~~~t~f~~k 140 (644)
T PLN02964 126 LVGYCELDLFDFVTQ 140 (644)
T ss_pred hhhheeecHhhccHH
Confidence 999999999888655
No 246
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=97.59 E-value=6.4e-05 Score=60.73 Aligned_cols=87 Identities=14% Similarity=0.321 Sum_probs=65.0
Q ss_pred EEEEEEeecCCCCCCCCCCCc--EEE--EEEC-CeeeEeeeecCCCCCeeeeEEEEEec--cCCCceEEEEEEEcCCCCC
Q 004208 42 YVRIVRARDLQVNQVTGTCDP--YVE--VKIG-NYKGTTIPFEKKLNPEWNQVFAFTKE--RLQAISVELLVKDKMIVNG 114 (768)
Q Consensus 42 ~V~i~~a~~L~~~d~~g~~dP--yv~--v~~~-~~~~~T~~~~~t~nP~Wne~f~f~~~--~~~~~~L~i~V~d~~~~~d 114 (768)
.|++++|++|.-.... .-+| |++ +.+. +..+||++..+..||+|+|+|.|.+. .++.-.|.|.|+..-+ +.
T Consensus 2 witv~~c~d~s~~~~~-~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~~~~-RK 79 (103)
T cd08684 2 WITVLKCKDLSWPSSC-GENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQTQTP-RK 79 (103)
T ss_pred EEEEEEeccccccccc-CcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeeccCC-cc
Confidence 5899999999543222 2244 443 2233 25689999999999999999999964 6667889999998322 88
Q ss_pred ceeEEEEEcCCCCCCC
Q 004208 115 DFIGKIKIDMPDIPKR 130 (768)
Q Consensus 115 ~~lG~~~i~l~~l~~~ 130 (768)
+.||.|.+++.++-.+
T Consensus 80 e~iG~~sL~l~s~gee 95 (103)
T cd08684 80 RTIGECSLSLRTLSTQ 95 (103)
T ss_pred ceeeEEEeecccCCHH
Confidence 9999999999988554
No 247
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=97.50 E-value=0.00014 Score=58.74 Aligned_cols=95 Identities=18% Similarity=0.361 Sum_probs=67.4
Q ss_pred EEEEEEeecCCCCCCC-CCCCcEEEEEE--CC-eEEeeecccCCCCCCcccceEEEEecCC--CCCcEEEEEEeccCCCC
Q 004208 203 RVNVIEAQDLVPKQRN-RNPEVFIKAIF--GN-VVLKTTVSAKKTVNPTWNEDLMFVAAEP--FDDPLILTVEDKLGDNK 276 (768)
Q Consensus 203 ~V~v~~a~~L~~~d~~-~~~dpyV~v~l--g~-~~~~T~~i~~~t~nP~wne~f~f~~~~~--~~~~L~i~V~d~d~~~~ 276 (768)
-|+++.|+||.-...- ..+..|++-.+ .+ ...||+.... +.||.|+|+|.|.+... .+-.|.|.|+. ...+
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrg-s~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~R 78 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEG-SNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPR 78 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcC-CCChhHHHHHHHHHHHhhccceEEEEEeec--cCCc
Confidence 4788999998744332 34556777544 33 4567776665 99999999999987543 45578888887 4567
Q ss_pred CceeEEEEEeccccccccCCCCCCceeEE
Q 004208 277 EECLGRLVLPLSKAGKRFLPLPAAAIWYN 305 (768)
Q Consensus 277 d~~lG~~~i~l~~l~~~~~~~~~~~~w~~ 305 (768)
.+.||.|.++++++..+ ...+|.+
T Consensus 79 Ke~iG~~sL~l~s~gee-----E~~HW~e 102 (103)
T cd08684 79 KRTIGECSLSLRTLSTQ-----ETDHWLE 102 (103)
T ss_pred cceeeEEEeecccCCHH-----Hhhhhhc
Confidence 88999999999987632 3455654
No 248
>PLN02964 phosphatidylserine decarboxylase
Probab=97.38 E-value=0.00026 Score=80.46 Aligned_cols=87 Identities=16% Similarity=0.141 Sum_probs=74.3
Q ss_pred CeeEEEEEEEEeecCCCCCCCCCCCcE-EEEEECCeEEeeecccCCCCCCcccceEEEEecCCCCCcEEEEEEeccCCCC
Q 004208 198 KLWYLRVNVIEAQDLVPKQRNRNPEVF-IKAIFGNVVLKTTVSAKKTVNPTWNEDLMFVAAEPFDDPLILTVEDKLGDNK 276 (768)
Q Consensus 198 ~~~~L~V~v~~a~~L~~~d~~~~~dpy-V~v~lg~~~~~T~~i~~~t~nP~wne~f~f~~~~~~~~~L~i~V~d~d~~~~ 276 (768)
-.|.+.+++++|+ ++. .|+| +.+.+|.+.+||.+.++ |.||+||+...|.+.........+.|||++..+.
T Consensus 52 ~~~~~~~~~~~~~----~~~---~~~~~~~~~~g~~~f~t~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 123 (644)
T PLN02964 52 FSGIALLTLVGAE----MKF---KDKWLACVSFGEQTFRTETSDS-TDKPVWNSEKKLLLEKNGPHLARISVFETNRLSK 123 (644)
T ss_pred ccCeEEEEeehhh----hcc---CCcEEEEEEecceeeeeccccc-cCCcccchhhceEeccCCcceEEEEEEecCCCCH
Confidence 4578999999998 222 4776 56778999999999998 9999999999999877666667999999999999
Q ss_pred CceeEEEEEecccccc
Q 004208 277 EECLGRLVLPLSKAGK 292 (768)
Q Consensus 277 d~~lG~~~i~l~~l~~ 292 (768)
++++|.|+++|.++..
T Consensus 124 n~lv~~~e~~~t~f~~ 139 (644)
T PLN02964 124 NTLVGYCELDLFDFVT 139 (644)
T ss_pred HHhhhheeecHhhccH
Confidence 9999999999988764
No 249
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=97.34 E-value=0.00014 Score=75.18 Aligned_cols=120 Identities=17% Similarity=0.179 Sum_probs=92.2
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeeeEeeeecCCCCCeeeeEEEEEecc---C--------CCceE
Q 004208 39 EFLYVRIVRARDLQVNQVTGTCDPYVEVKIG-----NYKGTTIPFEKKLNPEWNQVFAFTKER---L--------QAISV 102 (768)
Q Consensus 39 ~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~-----~~~~~T~~~~~t~nP~Wne~f~f~~~~---~--------~~~~L 102 (768)
..|.+.|+++.+++.....-..|-||++.+. .++.+|.++++|..|.|+|.|.+.+.. . ....+
T Consensus 367 ~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~ 446 (523)
T KOG3837|consen 367 QELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGK 446 (523)
T ss_pred hHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCe
Confidence 3577888888887654433446789988874 267899999999999999999999765 2 23679
Q ss_pred EEEEEEcCCC--CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCCCccceEEEEEEEEcc
Q 004208 103 ELLVKDKMIV--NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGSRARGELMFAIWFGT 164 (768)
Q Consensus 103 ~i~V~d~~~~--~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~i~~~~ 164 (768)
.|++|++..+ +|.++|.+.+.|..|...- .....++|.+... .+-|.|.+.+.+..
T Consensus 447 kfeifhkggf~rSdkl~gt~nikle~Len~c-----ei~e~~~l~DGRK-~vGGkLevKvRiR~ 504 (523)
T KOG3837|consen 447 KFEIFHKGGFNRSDKLTGTGNIKLEILENMC-----EICEYLPLKDGRK-AVGGKLEVKVRIRQ 504 (523)
T ss_pred eEEEeeccccccccceeceeeeeehhhhccc-----chhhceecccccc-ccCCeeEEEEEEec
Confidence 9999999988 9999999999999887652 2456678876432 25688888887753
No 250
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.11 E-value=0.00044 Score=71.20 Aligned_cols=110 Identities=19% Similarity=0.248 Sum_probs=87.6
Q ss_pred CeeeEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEe-cC----eeeeeccccCCCCCccccEEEEEEeCCCcEEEEEEEe
Q 004208 358 PVIGVLELGILSAKELLPMKSRDGRGTTDAYCVAKY-AN----KWVRTRTVVDSFDPKWNEQYTWEVYDPYTVITLVVFD 432 (768)
Q Consensus 358 ~~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~-g~----~~~~T~~~~~t~nP~wne~~~~~v~~~~~~l~v~v~d 432 (768)
...|.+.|.|++|++|.... .....++|||+|++ ++ ...+|+...+|++|-+.++..|.-..+...|.+.||-
T Consensus 266 d~~g~l~vEii~ar~l~~k~--~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~~k~Lq~tv~g 343 (405)
T KOG2060|consen 266 DSKGDLEVEIIRARGLVVKP--GSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPPGKYLQGTVWG 343 (405)
T ss_pred cccCceeEEEEecccccccC--CcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCCccEEEEEEec
Confidence 45688999999999998742 22337999999999 22 2478999999999988888888877778899999996
Q ss_pred CCCCCCCCCCCCceEEEEEeccccccCc-eeeeeEeeeecC
Q 004208 433 NCHLHPGGAKDSRIGKVRIRLSTLETDR-IYTHSYPLVALL 472 (768)
Q Consensus 433 ~~~~~~~~~~d~~lG~~~i~l~~l~~~~-~~~~~~~L~~~~ 472 (768)
.-.- -+.+.++|.++|-+.+|.-.. ....||+|....
T Consensus 344 dygR---md~k~fmg~aqi~l~eL~ls~~~~igwyKlfgss 381 (405)
T KOG2060|consen 344 DYGR---MDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGSS 381 (405)
T ss_pred cccc---cchHHHhhHHHHHhhhhccccccceeeeeccCCc
Confidence 4321 247889999999999998765 788999997654
No 251
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.09 E-value=0.00039 Score=71.60 Aligned_cols=113 Identities=23% Similarity=0.281 Sum_probs=89.4
Q ss_pred ccccccccEEEEEEEEeecCCCCCCC-CCCCcEEEEEECC-----eeeEeeeecCCCCCeeeeEEEEEeccCCCceEEEE
Q 004208 32 FDLVEQMEFLYVRIVRARDLQVNQVT-GTCDPYVEVKIGN-----YKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELL 105 (768)
Q Consensus 32 ~~~~~~~~~L~V~i~~a~~L~~~d~~-g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~ 105 (768)
-++.+..|.|+|.|++|++|..+... ..++|||+|++-+ .+.+|+...+|.+|-+-+...|.-... ...|.+.
T Consensus 262 ~~~~d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~-~k~Lq~t 340 (405)
T KOG2060|consen 262 IALMDSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPP-GKYLQGT 340 (405)
T ss_pred hhhhcccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCC-ccEEEEE
Confidence 45667789999999999999876543 3689999999864 367899888998888888777765443 7899999
Q ss_pred EEE-cCCC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCC
Q 004208 106 VKD-KMIV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDG 149 (768)
Q Consensus 106 V~d-~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 149 (768)
||. +.+. .+.|+|.+.+-+.+|.... ...-.||+|.....
T Consensus 341 v~gdygRmd~k~fmg~aqi~l~eL~ls~----~~~igwyKlfgsss 382 (405)
T KOG2060|consen 341 VWGDYGRMDHKSFMGVAQIMLDELNLSS----SPVIGWYKLFGSSS 382 (405)
T ss_pred EeccccccchHHHhhHHHHHhhhhcccc----ccceeeeeccCCcc
Confidence 996 4455 8899999999999997763 23578999987643
No 252
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=96.84 E-value=0.0015 Score=67.94 Aligned_cols=119 Identities=18% Similarity=0.258 Sum_probs=92.1
Q ss_pred EEEEEEEEecCCCCCCCCCCCCCcCcEEEEEe---c--CeeeeeccccCCCCCccccEEEEEEeC-C--C---------c
Q 004208 362 VLELGILSAKELLPMKSRDGRGTTDAYCVAKY---A--NKWVRTRTVVDSFDPKWNEQYTWEVYD-P--Y---------T 424 (768)
Q Consensus 362 ~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~---g--~~~~~T~~~~~t~nP~wne~~~~~v~~-~--~---------~ 424 (768)
.|++.|.++.+++.. .+.-.-|.|+++++ + .+..+|.++++|.+|.|.|.|.+.+.. + + .
T Consensus 368 elel~ivrg~~~pvp---~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~ 444 (523)
T KOG3837|consen 368 ELELAIVRGQKNPVP---GGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRL 444 (523)
T ss_pred HhHHHHhhcccCCCC---CCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhc
Confidence 477888899888762 23335678998776 2 356889999999999999999999875 2 1 2
Q ss_pred EEEEEEEeCCCCCCCCCCCCceEEEEEeccccccCceeeeeEeeeecCCCCcccccEEEEEEEEE
Q 004208 425 VITLVVFDNCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPLVALLPNGVKKMGEVQLAVRFT 489 (768)
Q Consensus 425 ~l~v~v~d~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~ 489 (768)
-+.+++|.+..|. .+|.++|.+.|.|..|.+.-.+...|+|++- .....|.+.+.+++.
T Consensus 445 g~kfeifhkggf~---rSdkl~gt~nikle~Len~cei~e~~~l~DG---RK~vGGkLevKvRiR 503 (523)
T KOG3837|consen 445 GKKFEIFHKGGFN---RSDKLTGTGNIKLEILENMCEICEYLPLKDG---RKAVGGKLEVKVRIR 503 (523)
T ss_pred CeeEEEeeccccc---cccceeceeeeeehhhhcccchhhceecccc---ccccCCeeEEEEEEe
Confidence 6899999988764 5899999999999999987777788888642 122458899888883
No 253
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=96.42 E-value=0.055 Score=50.05 Aligned_cols=127 Identities=14% Similarity=0.149 Sum_probs=82.6
Q ss_pred CCeeEEEEEEEEeecCCCCCCC--CCCCcEEE--EEECCeEEeeecccCCCCCCcccceEEEEecCCC------------
Q 004208 197 PKLWYLRVNVIEAQDLVPKQRN--RNPEVFIK--AIFGNVVLKTTVSAKKTVNPTWNEDLMFVAAEPF------------ 260 (768)
Q Consensus 197 p~~~~L~V~v~~a~~L~~~d~~--~~~dpyV~--v~lg~~~~~T~~i~~~t~nP~wne~f~f~~~~~~------------ 260 (768)
|...+|.+.|..++-....... +..+.-++ +.+++|.++|+.+.. +.+|.|+|.|.|.+....
T Consensus 6 ~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~-~~eP~f~e~Flf~l~~~~~~~~~~~~~lls 84 (156)
T PF15627_consen 6 PGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPC-ACEPDFNEEFLFELPRDSFGAGSTATTLLS 84 (156)
T ss_pred CCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCccc-ccCCCCCCcEEEEecccccccccchhHhhc
Confidence 4446799999998754422111 34444444 445899999999998 999999999999986542
Q ss_pred -CCcEEEEEEeccCCCCCceeEEEEEeccccccccCCCCCCceeEEcccCccCccccccccccceEEEEEec
Q 004208 261 -DDPLILTVEDKLGDNKEECLGRLVLPLSKAGKRFLPLPAAAIWYNLERNIANGEEKKDVRFASRICLRFSL 331 (768)
Q Consensus 261 -~~~L~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~g~~~~~~~~~g~i~l~v~~ 331 (768)
.+.+.+.|.-.|..+...++|+..+++..+...- ......-+.|.+.+.+ ..-..|-+.+++.+
T Consensus 85 ~~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~--~~~~~~~vEL~G~~~e-----~kv~~GiL~l~lEL 149 (156)
T PF15627_consen 85 ISDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSG--NGSTSFTVELCGVGPE-----SKVPVGILDLRLEL 149 (156)
T ss_pred CCCceEEEEEEecCCCceEeeeeceehHHHHhccC--CCccceeEEEeccCCC-----CccceeEEEEEEEe
Confidence 3467788877776666789999999988876321 1111223334443221 12345777777665
No 254
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=96.29 E-value=0.054 Score=50.15 Aligned_cols=128 Identities=16% Similarity=0.227 Sum_probs=86.4
Q ss_pred CeeeEEEEEEEEecCCCCCCC-CCCCCCcCcEEEEEecCeeeeeccccCCCCCccccEEEEEEeCC--------------
Q 004208 358 PVIGVLELGILSAKELLPMKS-RDGRGTTDAYCVAKYANKWVRTRTVVDSFDPKWNEQYTWEVYDP-------------- 422 (768)
Q Consensus 358 ~~~g~l~v~v~~a~~L~~~~~-~~~~g~~dpyv~v~~g~~~~~T~~~~~t~nP~wne~~~~~v~~~-------------- 422 (768)
+..-.|++.|..++-...--. .++...+--++-+.+++++++|+.+.-+.+|.|+|.|-|++...
T Consensus 6 ~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~ 85 (156)
T PF15627_consen 6 PGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSI 85 (156)
T ss_pred CCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcC
Confidence 344468888888875432100 01122233344466699999999999999999999999998632
Q ss_pred CcEEEEEEEeCCCCCCCCCCCCceEEEEEeccccccCcee--eeeEeeeecCCCCcccccEEEEEEEEE
Q 004208 423 YTVITLVVFDNCHLHPGGAKDSRIGKVRIRLSTLETDRIY--THSYPLVALLPNGVKKMGEVQLAVRFT 489 (768)
Q Consensus 423 ~~~l~v~v~d~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~--~~~~~L~~~~~~g~~~~G~i~l~~~~~ 489 (768)
++.+.+.|.-.|..+ ...++|.-.++...+...... .....|.+.........|.+++++.+-
T Consensus 86 ~~pihivli~~d~~~----~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~~~e~kv~~GiL~l~lELl 150 (156)
T PF15627_consen 86 SDPIHIVLIRTDPSG----ETTLVGSHFLDWRKVLCSGNGSTSFTVELCGVGPESKVPVGILDLRLELL 150 (156)
T ss_pred CCceEEEEEEecCCC----ceEeeeeceehHHHHhccCCCccceeEEEeccCCCCccceeEEEEEEEee
Confidence 357888888877633 458999999999887654322 445556655443333569999998873
No 255
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=95.53 E-value=0.13 Score=48.21 Aligned_cols=87 Identities=20% Similarity=0.263 Sum_probs=60.3
Q ss_pred EEEEEEEEecCCCCCCCCCCCCCcCcEEEEEe--cCeee----eeccccCCCCCccccEEEEEEe--C-C-CcEEEEEEE
Q 004208 362 VLELGILSAKELLPMKSRDGRGTTDAYCVAKY--ANKWV----RTRTVVDSFDPKWNEQYTWEVY--D-P-YTVITLVVF 431 (768)
Q Consensus 362 ~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~--g~~~~----~T~~~~~t~nP~wne~~~~~v~--~-~-~~~l~v~v~ 431 (768)
.++|.|+++.++... ..+|-||.+.+ |++.. .|+.+.- .++.|||-++|++. + | ...|.|++|
T Consensus 9 ~~~v~i~~~~~~~~~------~~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~ 81 (158)
T cd08398 9 NLRIKILCATYVNVN------DIDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSIC 81 (158)
T ss_pred CeEEEEEeeccCCCC------CcCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEE
Confidence 489999999998652 24688888755 77653 4544443 68999999999876 3 3 459999999
Q ss_pred eCCCCCCCCCCCCceEEEEEeccc
Q 004208 432 DNCHLHPGGAKDSRIGKVRIRLST 455 (768)
Q Consensus 432 d~~~~~~~~~~d~~lG~~~i~l~~ 455 (768)
+...-....+....||.+.++|-+
T Consensus 82 ~~~~~~~~k~~~~~iG~~ni~LFd 105 (158)
T cd08398 82 SVKGRKGAKEEHCPLAWGNINLFD 105 (158)
T ss_pred EEecccCCCCceEEEEEEEEEEEC
Confidence 976411000123569999999886
No 256
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=95.36 E-value=0.072 Score=60.90 Aligned_cols=109 Identities=20% Similarity=0.248 Sum_probs=77.4
Q ss_pred ccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------eeeEeeee-cCCCCCeeeeE-EEEEe-ccCCCceEEEEEE
Q 004208 38 MEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGN-------YKGTTIPF-EKKLNPEWNQV-FAFTK-ERLQAISVELLVK 107 (768)
Q Consensus 38 ~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~-------~~~~T~~~-~~t~nP~Wne~-f~f~~-~~~~~~~L~i~V~ 107 (768)
.+.+.|+|+++.-|-.++ ...||.|.+=| ..++|+++ .++.||+|||. |.|.. --+.-..|+|.||
T Consensus 702 A~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavy 777 (1189)
T KOG1265|consen 702 AATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVY 777 (1189)
T ss_pred EeeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeee
Confidence 468999999999886554 45899999754 35678876 45689999976 88873 2222467999999
Q ss_pred EcCCCCCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCCCc-cceEEEEEEE
Q 004208 108 DKMIVNGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGSR-ARGELMFAIW 161 (768)
Q Consensus 108 d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~-~~G~i~l~i~ 161 (768)
+.+ .++||+--+++..|..+ -....|....+.- ....|.+.+.
T Consensus 778 eEg---gK~ig~RIlpvd~l~~G--------Yrhv~LRse~Nqpl~lp~Lfv~i~ 821 (1189)
T KOG1265|consen 778 EEG---GKFIGQRILPVDGLNAG--------YRHVCLRSESNQPLTLPALFVYIV 821 (1189)
T ss_pred ccC---CceeeeeccchhcccCc--------ceeEEecCCCCCccccceeEEEEE
Confidence 985 68999999999988765 3455666654431 2234444443
No 257
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=95.20 E-value=0.054 Score=61.89 Aligned_cols=95 Identities=19% Similarity=0.267 Sum_probs=73.7
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-------CeEEeeecccCCCCCCcccce-EEEE-ecCCCCCcEEEEEEe
Q 004208 200 WYLRVNVIEAQDLVPKQRNRNPEVFIKAIFG-------NVVLKTTVSAKKTVNPTWNED-LMFV-AAEPFDDPLILTVED 270 (768)
Q Consensus 200 ~~L~V~v~~a~~L~~~d~~~~~dpyV~v~lg-------~~~~~T~~i~~~t~nP~wne~-f~f~-~~~~~~~~L~i~V~d 270 (768)
+.+.|+|+++.-|..++ ...||.|.+- ...++|+++..++.||+|+|. |.|. +.-+.-..|+|.||+
T Consensus 703 ~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavye 778 (1189)
T KOG1265|consen 703 ATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVYE 778 (1189)
T ss_pred eeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeeec
Confidence 46899999999988654 4589999993 256789999887999999876 7775 444556789999998
Q ss_pred ccCCCCCceeEEEEEeccccccccCCCCCCceeEEcccC
Q 004208 271 KLGDNKEECLGRLVLPLSKAGKRFLPLPAAAIWYNLERN 309 (768)
Q Consensus 271 ~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~~ 309 (768)
. ...+||+-.+|+..+.. .-+.+.|...
T Consensus 779 E----ggK~ig~RIlpvd~l~~-------GYrhv~LRse 806 (1189)
T KOG1265|consen 779 E----GGKFIGQRILPVDGLNA-------GYRHVCLRSE 806 (1189)
T ss_pred c----CCceeeeeccchhcccC-------cceeEEecCC
Confidence 5 45799999999988762 4455666654
No 258
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=95.17 E-value=0.14 Score=49.04 Aligned_cols=86 Identities=19% Similarity=0.239 Sum_probs=59.6
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCeEE----eeecccCCCCCCcccceEEEEec---CCCCCcEEEEEEec
Q 004208 201 YLRVNVIEAQDLVPKQRNRNPEVFIKAIF--GNVVL----KTTVSAKKTVNPTWNEDLMFVAA---EPFDDPLILTVEDK 271 (768)
Q Consensus 201 ~L~V~v~~a~~L~~~d~~~~~dpyV~v~l--g~~~~----~T~~i~~~t~nP~wne~f~f~~~---~~~~~~L~i~V~d~ 271 (768)
.++|+|+.+.++... ....+.||++.+ |++.. .|+...- ..++.|||.+.|++. -+.+..|.|+||+.
T Consensus 9 ~f~i~i~~~~~~~~~--~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~-~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~ 85 (173)
T cd08693 9 KFSITLHKISNLNAA--ERTMKVGVQAGLFHGGESLCKTVKTSEVSG-KNDPVWNETLEFDINVCDLPRMARLCFAIYEV 85 (173)
T ss_pred CEEEEEEEeccCccC--CCCceEEEEEEEEECCEEccCceEccccCC-CCccccceeEEcccchhcCChhHeEEEEEEEe
Confidence 489999999999862 234677888755 66533 5554443 567999999999763 23567899999986
Q ss_pred cCCC----------------CCceeEEEEEeccc
Q 004208 272 LGDN----------------KEECLGRLVLPLSK 289 (768)
Q Consensus 272 d~~~----------------~d~~lG~~~i~l~~ 289 (768)
.... ....||.+.++|-+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd 119 (173)
T cd08693 86 SKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFD 119 (173)
T ss_pred cccccccccccccccccccCcceEEEEEeEEEEc
Confidence 5321 23578888877765
No 259
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=95.12 E-value=0.49 Score=43.81 Aligned_cols=115 Identities=19% Similarity=0.254 Sum_probs=79.7
Q ss_pred eeEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEecCee---eeeccc-cCCCCCccccEEEEEEe---CC--C----cEE
Q 004208 360 IGVLELGILSAKELLPMKSRDGRGTTDAYCVAKYANKW---VRTRTV-VDSFDPKWNEQYTWEVY---DP--Y----TVI 426 (768)
Q Consensus 360 ~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~~~---~~T~~~-~~t~nP~wne~~~~~v~---~~--~----~~l 426 (768)
.-.+.+.|++..+++. .....||+++.|+.. ..|... ..+..-.|||.|.+.+. +. . -.+
T Consensus 6 kf~~~l~i~~l~~~p~-------~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~ 78 (143)
T PF10358_consen 6 KFQFDLTIHELENLPS-------SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKEL 78 (143)
T ss_pred eEEEEEEEEEeECcCC-------CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEE
Confidence 3458899999998875 234567778777764 455544 34668899999988875 11 1 268
Q ss_pred EEEEEeCCCCCCCCCCCCceEEEEEeccccccC--ceeeeeEeeeecCCCCcccccEEEEEEEEE
Q 004208 427 TLVVFDNCHLHPGGAKDSRIGKVRIRLSTLETD--RIYTHSYPLVALLPNGVKKMGEVQLAVRFT 489 (768)
Q Consensus 427 ~v~v~d~~~~~~~~~~d~~lG~~~i~l~~l~~~--~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~ 489 (768)
.+.|+.... +++...+|.+.|+|+++.+. ......++|... .+....+++.+.+.
T Consensus 79 ~~~v~~~~~----~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~----~~~~a~L~isi~~~ 135 (143)
T PF10358_consen 79 KFSVFEVDG----SGKKKVLGKVSINLAEYANEDEEPITVRLLLKKC----KKSNATLSISISLS 135 (143)
T ss_pred EEEEEEecC----CCccceEEEEEEEHHHhhCcCCCcEEEEEeCccC----CCCCcEEEEEEEEE
Confidence 888988743 11336999999999999874 556677888644 13346777777764
No 260
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=95.04 E-value=0.091 Score=48.70 Aligned_cols=58 Identities=14% Similarity=0.280 Sum_probs=42.8
Q ss_pred cchhhhHHHHHHHHhhHHHHHHhhccccccccchhHHHHHHHHHHHHHcchhHHHHHHH
Q 004208 560 RRGKANLARLMRFLNGFGVAWIWFDQVRRWKNPMTTTFVHVFYVIMVLFPQMILATFFF 618 (768)
Q Consensus 560 ~~~~~n~~rl~~~~~~~~~~~~~~~~i~~W~~p~~t~~~~~~~~~~v~~p~l~lp~~~l 618 (768)
+++..-..|++.+++-+-..+..++.+++|++|..|.++.++++++++- -+++|+-.+
T Consensus 62 drlr~va~rvQ~vlgd~At~gERl~allsWrdP~aT~lf~~~clv~avv-ly~vP~r~l 119 (156)
T PF08372_consen 62 DRLRSVAGRVQNVLGDVATQGERLQALLSWRDPRATALFVVFCLVAAVV-LYFVPFRVL 119 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHH-HHHhhHHHH
Confidence 4566667788888888888889999999999999997777765554433 234666544
No 261
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=94.76 E-value=0.13 Score=49.16 Aligned_cols=103 Identities=16% Similarity=0.199 Sum_probs=68.8
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEE--EECCe----eeEeeeecCCCCCeeeeEEEEEe--ccC-CCceEEEEEEEcC
Q 004208 40 FLYVRIVRARDLQVNQVTGTCDPYVEV--KIGNY----KGTTIPFEKKLNPEWNQVFAFTK--ERL-QAISVELLVKDKM 110 (768)
Q Consensus 40 ~L~V~i~~a~~L~~~d~~g~~dPyv~v--~~~~~----~~~T~~~~~t~nP~Wne~f~f~~--~~~-~~~~L~i~V~d~~ 110 (768)
.++|+|+.+.+|... ....+-||.+ ..|++ ..+|+....+.++.|||.+.|++ .++ .+..|.|.||+..
T Consensus 9 ~f~i~i~~~~~~~~~--~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~ 86 (173)
T cd08693 9 KFSITLHKISNLNAA--ERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEVS 86 (173)
T ss_pred CEEEEEEEeccCccC--CCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEec
Confidence 689999999999762 2335566665 44653 23566555567799999999985 343 3678999999975
Q ss_pred CC-----------------CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCCCccceEEEEEEEEcc
Q 004208 111 IV-----------------NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGSRARGELMFAIWFGT 164 (768)
Q Consensus 111 ~~-----------------~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~i~~~~ 164 (768)
.. .+..||.+.+.|-+.. +.-..|...+.+|...
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~~--------------------~~Lr~G~~~L~lW~~~ 137 (173)
T cd08693 87 KKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDYK--------------------GQLKTGDHTLYMWTYA 137 (173)
T ss_pred ccccccccccccccccccCcceEEEEEeEEEEccc--------------------chhhcCCeEEEecCCC
Confidence 42 1356777766666532 1113488888888653
No 262
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=94.66 E-value=0.34 Score=40.06 Aligned_cols=63 Identities=22% Similarity=0.236 Sum_probs=49.0
Q ss_pred CCcEEEEEECC-eeeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcCCCCCceeEEEEEcCCCC
Q 004208 60 CDPYVEVKIGN-YKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIVNGDFIGKIKIDMPDI 127 (768)
Q Consensus 60 ~dPyv~v~~~~-~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~~~d~~lG~~~i~l~~l 127 (768)
++-.+++++++ ...+|.-. ...+..||+.|.+.++. +..|+|.||=+|. ..+-|-.-+.|++.
T Consensus 9 ~eV~avLklDn~~VgqT~Wk-~~s~q~WDQ~Fti~LdR--sRELEI~VywrD~--RslCav~~lrLEd~ 72 (98)
T cd08687 9 SEVSAVLKLDNTVVGQTQWK-PKSNQAWDQSFTLELER--SRELEIAVYWRDW--RSLCAVKFLKLEDE 72 (98)
T ss_pred cceEEEEEEcCeEEeecccc-ccccccccceeEEEeec--ccEEEEEEEEecc--hhhhhheeeEhhhh
Confidence 56789999998 56777654 34689999999999987 6789999987764 45666677777774
No 263
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=94.61 E-value=0.21 Score=46.94 Aligned_cols=107 Identities=19% Similarity=0.239 Sum_probs=72.0
Q ss_pred ccccccccEEEEEEEEeecCCCCCCCCCCCcEEEEE--ECCee----eEeeeecCCCCCeeeeEEEEEe--ccC-CCceE
Q 004208 32 FDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVK--IGNYK----GTTIPFEKKLNPEWNQVFAFTK--ERL-QAISV 102 (768)
Q Consensus 32 ~~~~~~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~--~~~~~----~~T~~~~~t~nP~Wne~f~f~~--~~~-~~~~L 102 (768)
+|+.+ .++|+|+++.++...+ .+|-||.+. .|++. .+|+.+. ..++.|||...|++ .++ .+..|
T Consensus 4 wd~~~---~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~-~~~~~WnEwL~fpI~i~dLPr~ArL 76 (158)
T cd08398 4 WKINS---NLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVP-CSNPRWNEWLDYDIYIPDLPRSARL 76 (158)
T ss_pred eeCCC---CeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccC-CCCCccceeEEcccchhcCChhheE
Confidence 45543 5899999999987543 357787774 45532 2454444 37899999999985 343 36789
Q ss_pred EEEEEEcCCC-----CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCCCccceEEEEEEEEccc
Q 004208 103 ELLVKDKMIV-----NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGSRARGELMFAIWFGTQ 165 (768)
Q Consensus 103 ~i~V~d~~~~-----~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~i~~~~~ 165 (768)
.|.||+.... ....+|.+.++|-+-... | .+|...+.+|..+.
T Consensus 77 ~iti~~~~~~~~~k~~~~~iG~~ni~LFd~~~~-------------L-------r~G~~~L~lW~~~~ 124 (158)
T cd08398 77 CLSICSVKGRKGAKEEHCPLAWGNINLFDYTDT-------------L-------VSGKMALNLWPVPH 124 (158)
T ss_pred EEEEEEEecccCCCCceEEEEEEEEEEECCCCh-------------h-------hCCCEEEEEEcCCc
Confidence 9999997642 224689988888763221 1 24888888887543
No 264
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=94.02 E-value=0.37 Score=45.39 Aligned_cols=87 Identities=22% Similarity=0.289 Sum_probs=59.5
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEE--CCeE----EeeecccCCCCCCcccceEEEEec---CCCCCcEEEEEEecc
Q 004208 202 LRVNVIEAQDLVPKQRNRNPEVFIKAIF--GNVV----LKTTVSAKKTVNPTWNEDLMFVAA---EPFDDPLILTVEDKL 272 (768)
Q Consensus 202 L~V~v~~a~~L~~~d~~~~~dpyV~v~l--g~~~----~~T~~i~~~t~nP~wne~f~f~~~---~~~~~~L~i~V~d~d 272 (768)
++|.+....++... .....+-||++.+ |++. ..|+.... ..++.|||...|++. -+.+..|.|++|+.+
T Consensus 10 ~~i~i~~~~~~~~~-~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~-~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~ 87 (156)
T cd08380 10 LRIKIHGITNINLL-DSEDLKLYVRVQLYHGGEPLCPPQSTKKVPF-STSVTWNEWLTFDILISDLPREARLCLSIYAVS 87 (156)
T ss_pred eEEEEEeecccccc-CCCceeEEEEEEEEECCEEccCceeccCCcC-CCCCcccceeEccchhhcCChhheEEEEEEEEe
Confidence 77888888877651 1234577777766 5542 23333332 368999999999853 235678999999976
Q ss_pred CCC--CCceeEEEEEecccc
Q 004208 273 GDN--KEECLGRLVLPLSKA 290 (768)
Q Consensus 273 ~~~--~d~~lG~~~i~l~~l 290 (768)
..+ .+..||.+.++|=+.
T Consensus 88 ~~~~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 88 EPGSKKEVPLGWVNVPLFDY 107 (156)
T ss_pred cCCCCcceEEEEEeEEeEcc
Confidence 543 467999999988663
No 265
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=93.98 E-value=0.43 Score=44.99 Aligned_cols=89 Identities=19% Similarity=0.271 Sum_probs=60.3
Q ss_pred EEEEEEEEecCCCCCCCCCCCCCcCcEEEEEe--cCee----eeeccccCCCCCccccEEEEEEe--C-C-CcEEEEEEE
Q 004208 362 VLELGILSAKELLPMKSRDGRGTTDAYCVAKY--ANKW----VRTRTVVDSFDPKWNEQYTWEVY--D-P-YTVITLVVF 431 (768)
Q Consensus 362 ~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~--g~~~----~~T~~~~~t~nP~wne~~~~~v~--~-~-~~~l~v~v~ 431 (768)
.++|.|....++... .....+-|+.+.+ |++. ..|.....+.++.|||-++|++. + | .+.|.+++|
T Consensus 9 ~~~i~i~~~~~~~~~----~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~ 84 (156)
T cd08380 9 NLRIKIHGITNINLL----DSEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIY 84 (156)
T ss_pred CeEEEEEeecccccc----CCCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEE
Confidence 377888888887541 1234677777644 7653 24444443468999999999875 3 3 458999999
Q ss_pred eCCCCCCCCCCCCceEEEEEecccc
Q 004208 432 DNCHLHPGGAKDSRIGKVRIRLSTL 456 (768)
Q Consensus 432 d~~~~~~~~~~d~~lG~~~i~l~~l 456 (768)
+.+.-+ ...+..||.+.++|-+-
T Consensus 85 ~~~~~~--~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 85 AVSEPG--SKKEVPLGWVNVPLFDY 107 (156)
T ss_pred EEecCC--CCcceEEEEEeEEeEcc
Confidence 976521 12467999999998864
No 266
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=93.97 E-value=1.5 Score=40.47 Aligned_cols=120 Identities=18% Similarity=0.211 Sum_probs=78.4
Q ss_pred ccEEEEEEEEeecCCCCCCCCCCCcEEEEEECCee---eEeeeec-CCCCCeeeeEEEEEec--------cCCCceEEEE
Q 004208 38 MEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGNYK---GTTIPFE-KKLNPEWNQVFAFTKE--------RLQAISVELL 105 (768)
Q Consensus 38 ~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~~~---~~T~~~~-~t~nP~Wne~f~f~~~--------~~~~~~L~i~ 105 (768)
...+.|+|.+..+++. ....-||+.+.++.. .+|.... .+-.-.|||.|.+.+. ..+...+.|.
T Consensus 6 kf~~~l~i~~l~~~p~----~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~ 81 (143)
T PF10358_consen 6 KFQFDLTIHELENLPS----SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFS 81 (143)
T ss_pred eEEEEEEEEEeECcCC----CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEE
Confidence 4568999999999976 223456666666543 4554432 2334789999999842 2456789999
Q ss_pred EEEcCCC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCCCccceEEEEEEEEcccC
Q 004208 106 VKDKMIV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGSRARGELMFAIWFGTQA 166 (768)
Q Consensus 106 V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~i~~~~~~ 166 (768)
|+..... +...+|.+.|+|+++..... .....-++|.... .....|.+++.+....
T Consensus 82 v~~~~~~~~k~~lG~~~inLaey~~~~~---~~~~~~~~l~~~~--~~~a~L~isi~~~~~~ 138 (143)
T PF10358_consen 82 VFEVDGSGKKKVLGKVSINLAEYANEDE---EPITVRLLLKKCK--KSNATLSISISLSELR 138 (143)
T ss_pred EEEecCCCccceEEEEEEEHHHhhCcCC---CcEEEEEeCccCC--CCCcEEEEEEEEEECc
Confidence 9988544 33699999999999876421 1123456666542 2447788877765433
No 267
>PF02453 Reticulon: Reticulon; InterPro: IPR003388 Eukaryotic proteins of the reticulon (RTN) family all share an association with the endoplasmic reticulum (ER). Whereas amino-terminal regions are not related to one another, all reticulon proteins share a 200 amino acid residue region of sequence similarity at the C-terminal. This region contains two large hydrophobic regions separated by a 66 residue hydrophilic segment. The conserved hydrophobic C-terminal portion has been shown to play an essential role in the association of reticulons with the ER membrane. The hydrophobic portions are supposed to be membrane-embedded and the hydrophilic 66 residue localized to the lumenal/extracellular face of the membrane. Most reticulons have a di-lysine ER retention motif at the C-terminal. Because of their likely association with the rough as well as the smooth ER, the reticulons might play some role in transport processes or in regulation of intracellular calcium levels. It has been suggested that the reticulons may be serving as ER-associated channel-like complexes [, , , ].; GO: 0005783 endoplasmic reticulum; PDB: 2KO2_A 2JV5_A 2G31_A.
Probab=93.60 E-value=0.0075 Score=57.86 Aligned_cols=61 Identities=15% Similarity=0.124 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHhhhccccCchhHHHHHHHHHHHHHHHHHHhHHhhhhhhheecccCCCccC
Q 004208 687 NGDLDSQLERLQSLIDWRDPRATAMFSIFCLMAAVVFYIVPLWILLLFAGPFVMRHPRFRI 747 (768)
Q Consensus 687 l~~~a~~~e~~~~l~~w~~p~~t~~~~~~l~~~~~v~~~vP~r~i~l~~g~~~~r~P~~r~ 747 (768)
...++..+..++.++.|+||..|..++++|++++.+..+++...++.++.+..+.=|.+..
T Consensus 90 ~~~~n~~~~~~~~l~~~~~~~~~l~~~~~l~~l~~lg~~~s~~~L~~l~~~~~f~~P~ly~ 150 (169)
T PF02453_consen 90 AEWINSVLSWLRRLVFGEDPKKSLKVFVVLYILSFLGSWFSFLTLLYLGVLGAFTVPKLYE 150 (169)
T ss_dssp CCCCCHHHHHHHCCCHCT-TTGGG-------------------------------------
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhhHHHHH
Confidence 3345566888999999999999999999999999999888988777765555444455444
No 268
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=93.59 E-value=0.42 Score=45.04 Aligned_cols=69 Identities=20% Similarity=0.286 Sum_probs=51.3
Q ss_pred CcCcEEEEEe--cCee----eeeccccCCCCCccccEEEEEEe--C-C-CcEEEEEEEeCCCCCCCCCCCCceEEEEEec
Q 004208 384 TTDAYCVAKY--ANKW----VRTRTVVDSFDPKWNEQYTWEVY--D-P-YTVITLVVFDNCHLHPGGAKDSRIGKVRIRL 453 (768)
Q Consensus 384 ~~dpyv~v~~--g~~~----~~T~~~~~t~nP~wne~~~~~v~--~-~-~~~l~v~v~d~~~~~~~~~~d~~lG~~~i~l 453 (768)
.+|-||.+.+ |++. ..|..+.-+..+.|||-+.|+|. + | ...|.|+|||.+. .++...||.+.++|
T Consensus 29 ~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~----~~~~~~vg~~~~~l 104 (159)
T cd08397 29 NSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSG----TGKAVPFGGTTLSL 104 (159)
T ss_pred CCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecC----CCCceEEEEEEEee
Confidence 4788888755 6654 35655555667899999999886 3 3 4699999999875 22567999999998
Q ss_pred ccc
Q 004208 454 STL 456 (768)
Q Consensus 454 ~~l 456 (768)
-+-
T Consensus 105 Fd~ 107 (159)
T cd08397 105 FNK 107 (159)
T ss_pred ECC
Confidence 764
No 269
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=93.06 E-value=0.21 Score=50.56 Aligned_cols=97 Identities=13% Similarity=0.066 Sum_probs=70.0
Q ss_pred ccccccccEEEEEEEEeecCCCCC--CCCCCCcEEEEEECCe-eeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEE
Q 004208 32 FDLVEQMEFLYVRIVRARDLQVNQ--VTGTCDPYVEVKIGNY-KGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKD 108 (768)
Q Consensus 32 ~~~~~~~~~L~V~i~~a~~L~~~d--~~g~~dPyv~v~~~~~-~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d 108 (768)
.+++...|.|.++++.+++|+-.. .+-+.+-||++..+.+ +.+|.+.....--.|.|+|..++.+ ...+.+-||.
T Consensus 44 l~~~s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~--~~vl~~lvyS 121 (442)
T KOG1452|consen 44 LRLVSSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVN--IEVLHYLVYS 121 (442)
T ss_pred eeeecccceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeeccc--ceeeeEEEee
Confidence 455666899999999999997543 2446789999999874 6788777666777899999998765 3578888999
Q ss_pred cCCC-CCceeEEEEEcCCCCCCC
Q 004208 109 KMIV-NGDFIGKIKIDMPDIPKR 130 (768)
Q Consensus 109 ~~~~-~d~~lG~~~i~l~~l~~~ 130 (768)
++.- +.++.-..-+.+..+...
T Consensus 122 W~pq~RHKLC~~g~l~~~~v~rq 144 (442)
T KOG1452|consen 122 WPPQRRHKLCHLGLLEAFVVDRQ 144 (442)
T ss_pred cCchhhccccccchhhhhhhhhc
Confidence 8876 555433334444444433
No 270
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=92.91 E-value=0.91 Score=43.47 Aligned_cols=89 Identities=15% Similarity=0.163 Sum_probs=56.2
Q ss_pred EEEEEEEecCCCCCCCCCCCCCcCcEEEEEe--cCee---eeeccccCCCCCccccEEEEEEe--C-C-CcEEEEEEEeC
Q 004208 363 LELGILSAKELLPMKSRDGRGTTDAYCVAKY--ANKW---VRTRTVVDSFDPKWNEQYTWEVY--D-P-YTVITLVVFDN 433 (768)
Q Consensus 363 l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~--g~~~---~~T~~~~~t~nP~wne~~~~~v~--~-~-~~~l~v~v~d~ 433 (768)
++|.|+++..+.. +......-||.+.+ |++. .+|....-+.++.|||-+.|++. | | ...|.|.||+.
T Consensus 12 friki~~~~~~~~----~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~ 87 (178)
T cd08399 12 FRVKILGIDIPVL----PRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCG 87 (178)
T ss_pred EEEEEEeecccCc----CCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEE
Confidence 7888888874432 22223445666533 6654 35665555678999999888876 4 3 45999999996
Q ss_pred CCCC------------CCCCCCCceEEEEEeccc
Q 004208 434 CHLH------------PGGAKDSRIGKVRIRLST 455 (768)
Q Consensus 434 ~~~~------------~~~~~d~~lG~~~i~l~~ 455 (768)
.... ..++.+..||.+.+.|-+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD 121 (178)
T cd08399 88 KAPALSSKKSAESPSSESKGKHQLLYYVNLLLID 121 (178)
T ss_pred ecCcccccccccccccccccccceEEEEEEEEEc
Confidence 3210 001236678888888776
No 271
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=92.88 E-value=0.46 Score=44.79 Aligned_cols=70 Identities=24% Similarity=0.316 Sum_probs=51.0
Q ss_pred CCCCcEEEEEE--CCeEE----eeecccCCCCCCcccceEEEEec---CCCCCcEEEEEEeccCCCCCceeEEEEEeccc
Q 004208 219 RNPEVFIKAIF--GNVVL----KTTVSAKKTVNPTWNEDLMFVAA---EPFDDPLILTVEDKLGDNKEECLGRLVLPLSK 289 (768)
Q Consensus 219 ~~~dpyV~v~l--g~~~~----~T~~i~~~t~nP~wne~f~f~~~---~~~~~~L~i~V~d~d~~~~d~~lG~~~i~l~~ 289 (768)
..+|-||++.+ |++.. +|+...- +..+.|||-..|++. -+.+..|.|+||+.+..++...+|.++++|-+
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f-~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd 106 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPF-KNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFN 106 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCC-CCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeEC
Confidence 34678888766 55432 5554444 567899999999864 23567899999998765567799999998865
No 272
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=92.60 E-value=0.59 Score=44.79 Aligned_cols=90 Identities=22% Similarity=0.293 Sum_probs=62.8
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCeEE----eeeccc---CCCCCCcccceEEEEec---CCCCCcEEEEE
Q 004208 201 YLRVNVIEAQDLVPKQRNRNPEVFIKAIF--GNVVL----KTTVSA---KKTVNPTWNEDLMFVAA---EPFDDPLILTV 268 (768)
Q Consensus 201 ~L~V~v~~a~~L~~~d~~~~~dpyV~v~l--g~~~~----~T~~i~---~~t~nP~wne~f~f~~~---~~~~~~L~i~V 268 (768)
.++|+|.++.+++........|-||++.+ |++.. .|+... .-...+.|||-..|.+. -+.+..|.|++
T Consensus 9 ~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~itl 88 (171)
T cd04012 9 LLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLTL 88 (171)
T ss_pred cEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEEE
Confidence 48899999999997765556788888866 65533 343221 11235779999998763 23567899999
Q ss_pred EeccCCC---------CCceeEEEEEecccc
Q 004208 269 EDKLGDN---------KEECLGRLVLPLSKA 290 (768)
Q Consensus 269 ~d~d~~~---------~d~~lG~~~i~l~~l 290 (768)
|+....+ .+..||.+.++|=+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 89 YGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred EEEecCCccccccccccceEEEEEeEeeEcc
Confidence 9876543 356899998887663
No 273
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=92.04 E-value=1.1 Score=43.04 Aligned_cols=69 Identities=28% Similarity=0.288 Sum_probs=45.5
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEE--CCeEE---eeecccCCCCCCcccceEEEEec---CCCCCcEEEEEEecc
Q 004208 202 LRVNVIEAQDLVPKQRNRNPEVFIKAIF--GNVVL---KTTVSAKKTVNPTWNEDLMFVAA---EPFDDPLILTVEDKL 272 (768)
Q Consensus 202 L~V~v~~a~~L~~~d~~~~~dpyV~v~l--g~~~~---~T~~i~~~t~nP~wne~f~f~~~---~~~~~~L~i~V~d~d 272 (768)
++|.|.++.. +..+.......||++.+ |++.. +|+...- +.++.|||-+.|++. -+.+..|.|+||+..
T Consensus 12 friki~~~~~-~~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~-~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~ 88 (178)
T cd08399 12 FRVKILGIDI-PVLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPF-TEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK 88 (178)
T ss_pred EEEEEEeecc-cCcCCCCceEEEEEEEEEECCeecccceeeccCC-CCCccccccEECccccccCChhhEEEEEEEEEe
Confidence 7888888863 33333333456777655 55432 5555554 667999999888863 235668999999863
No 274
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=91.42 E-value=0.58 Score=47.46 Aligned_cols=76 Identities=20% Similarity=0.260 Sum_probs=56.0
Q ss_pred CeeeEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEecCe-eeeeccccCCCCCccccEEEEEEeCCCcEEEEEEEeCCC
Q 004208 358 PVIGVLELGILSAKELLPMKSRDGRGTTDAYCVAKYANK-WVRTRTVVDSFDPKWNEQYTWEVYDPYTVITLVVFDNCH 435 (768)
Q Consensus 358 ~~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~~-~~~T~~~~~t~nP~wne~~~~~v~~~~~~l~v~v~d~~~ 435 (768)
...|.|.+++++++||.-... ..+-.-+-||++++..+ ..||++......-.|.|.|..++.+ .+++.+-||.|+.
T Consensus 48 s~tGiL~~H~~~GRGLr~~p~-~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~-~~vl~~lvySW~p 124 (442)
T KOG1452|consen 48 SSTGILYFHAYNGRGLRMTPQ-QKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVN-IEVLHYLVYSWPP 124 (442)
T ss_pred cccceEEEEEecccccccChh-ccCceeeeeeeeeecccCccccccccCCCCccchhhceeeccc-ceeeeEEEeecCc
Confidence 456889999999999976531 12336789999999764 5777777666777889999888765 3466777777664
No 275
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=90.84 E-value=1.9 Score=41.25 Aligned_cols=92 Identities=16% Similarity=0.258 Sum_probs=61.5
Q ss_pred EEEEEEEEecCCCCCCCCCCCCCcCcEEEEEe--cCeee----eecccc--C--CCCCccccEEEEEEe--C-C-CcEEE
Q 004208 362 VLELGILSAKELLPMKSRDGRGTTDAYCVAKY--ANKWV----RTRTVV--D--SFDPKWNEQYTWEVY--D-P-YTVIT 427 (768)
Q Consensus 362 ~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~--g~~~~----~T~~~~--~--t~nP~wne~~~~~v~--~-~-~~~l~ 427 (768)
.++|+|.++.+++.. ......|-|+.+.+ |++.. .|+... + ...+.|||-++|++. + | .+.|.
T Consensus 9 ~~~i~v~~~h~~~~~---~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~ 85 (171)
T cd04012 9 LLSVTVSSLHRIPPT---WVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLV 85 (171)
T ss_pred cEEEEEEEeecCChH---HhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEE
Confidence 488999999999873 22235788888644 77653 444322 1 236779999888876 3 3 45899
Q ss_pred EEEEeCCCCCCC-----CCCCCceEEEEEecccc
Q 004208 428 LVVFDNCHLHPG-----GAKDSRIGKVRIRLSTL 456 (768)
Q Consensus 428 v~v~d~~~~~~~-----~~~d~~lG~~~i~l~~l 456 (768)
|++|+...-..+ ...+..||.+.++|-+-
T Consensus 86 itl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 86 LTLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred EEEEEEecCCccccccccccceEEEEEeEeeEcc
Confidence 999997642100 01357999999998763
No 276
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=90.68 E-value=2.8 Score=38.72 Aligned_cols=75 Identities=15% Similarity=0.271 Sum_probs=51.6
Q ss_pred EeeeecCC-CCCeeeeEEEEEe--ccC-CCceEEEEEEEcCCC-CC----ceeEEEEEcCCCCCCCCCCCCCCCCeEEEc
Q 004208 74 TTIPFEKK-LNPEWNQVFAFTK--ERL-QAISVELLVKDKMIV-NG----DFIGKIKIDMPDIPKRVPPDSPLAPEWKRL 144 (768)
Q Consensus 74 ~T~~~~~t-~nP~Wne~f~f~~--~~~-~~~~L~i~V~d~~~~-~d----~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 144 (768)
.|+....+ .++.|||.+.|++ .++ ....|.|.||+.+.. .+ ..||.+.++|-+.... |
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~~~~-------------L 89 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDYRGQ-------------L 89 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-TTSB-------------B
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECCCCc-------------c
Confidence 56655555 7999999999985 343 367899999998876 44 6999999998876321 1
Q ss_pred ccCCCCccceEEEEEEEEcccCCc
Q 004208 145 EAKDGSRARGELMFAIWFGTQADE 168 (768)
Q Consensus 145 ~~~~~~~~~G~i~l~i~~~~~~d~ 168 (768)
..|...+.+|-....+.
T Consensus 90 -------~~G~~~L~lW~~~~~~~ 106 (142)
T PF00792_consen 90 -------RQGPQKLSLWPDEEPDP 106 (142)
T ss_dssp -------EEEEEEEE-EET-TTSS
T ss_pred -------cCCCEEEEEEcCCCCcc
Confidence 34888899887665543
No 277
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=88.72 E-value=2.7 Score=38.78 Aligned_cols=66 Identities=23% Similarity=0.272 Sum_probs=44.3
Q ss_pred cEEEE--EecCee-----eeeccccCC-CCCccccEEEEEEe--C-C-CcEEEEEEEeCCCCCCCCCCC----CceEEEE
Q 004208 387 AYCVA--KYANKW-----VRTRTVVDS-FDPKWNEQYTWEVY--D-P-YTVITLVVFDNCHLHPGGAKD----SRIGKVR 450 (768)
Q Consensus 387 pyv~v--~~g~~~-----~~T~~~~~t-~nP~wne~~~~~v~--~-~-~~~l~v~v~d~~~~~~~~~~d----~~lG~~~ 450 (768)
.||.+ +.|++. ..|....-+ .++.|||.++|++. + | .+.|.|+||+.+.-. .+ ..||.+.
T Consensus 4 ~~V~~~ly~g~~~L~~p~~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~----~~~~~~~~lgw~n 79 (142)
T PF00792_consen 4 LYVECQLYHGGEPLCNPVQSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKK----KSKKKKVPLGWVN 79 (142)
T ss_dssp EEEEEEEEETTEESS-EEEE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECST----TT--EEEEEEEEE
T ss_pred EEEEEEEEECCEEeecCeeeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCC----ccccceeEEEEEE
Confidence 34443 446654 255555555 79999999999876 3 3 458999999876522 33 6899999
Q ss_pred Eecccc
Q 004208 451 IRLSTL 456 (768)
Q Consensus 451 i~l~~l 456 (768)
++|-+.
T Consensus 80 ~~lFd~ 85 (142)
T PF00792_consen 80 LPLFDY 85 (142)
T ss_dssp EESB-T
T ss_pred EEeECC
Confidence 998865
No 278
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=87.49 E-value=5.4 Score=38.63 Aligned_cols=40 Identities=13% Similarity=0.311 Sum_probs=33.1
Q ss_pred eeEeeeecCCCCCeeeeEEEEEe--ccCCCceEEEEEEEcCC
Q 004208 72 KGTTIPFEKKLNPEWNQVFAFTK--ERLQAISVELLVKDKMI 111 (768)
Q Consensus 72 ~~~T~~~~~t~nP~Wne~f~f~~--~~~~~~~L~i~V~d~~~ 111 (768)
..+|.+.....+|.|+|++.+.+ +......|.|++++...
T Consensus 54 e~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~ 95 (196)
T cd08694 54 EYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSS 95 (196)
T ss_pred eEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeecc
Confidence 56888888999999999999886 45567899999988754
No 279
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=86.68 E-value=4.1 Score=35.02 Aligned_cols=70 Identities=17% Similarity=0.265 Sum_probs=46.4
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEE--CCeEE----eeecccCCCCCCcccceEEEEec---CCCCCcEEEEEEecc
Q 004208 202 LRVNVIEAQDLVPKQRNRNPEVFIKAIF--GNVVL----KTTVSAKKTVNPTWNEDLMFVAA---EPFDDPLILTVEDKL 272 (768)
Q Consensus 202 L~V~v~~a~~L~~~d~~~~~dpyV~v~l--g~~~~----~T~~i~~~t~nP~wne~f~f~~~---~~~~~~L~i~V~d~d 272 (768)
+.+.+...++.........++-||++.+ |++.. .|+...- ...+.|||-..|++. -+.+..|.|++|+..
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~-~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPF-FPSVKWNEWLTFPIQISDLPREARLCITIYEVK 91 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCC-CCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence 5566777777665443333588888866 65433 4544433 556899999999753 235678999999864
No 280
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=86.61 E-value=5.9 Score=38.26 Aligned_cols=40 Identities=8% Similarity=0.267 Sum_probs=32.8
Q ss_pred eeEeeeecCCCCCeeeeEEEEEe--ccCCCceEEEEEEEcCC
Q 004208 72 KGTTIPFEKKLNPEWNQVFAFTK--ERLQAISVELLVKDKMI 111 (768)
Q Consensus 72 ~~~T~~~~~t~nP~Wne~f~f~~--~~~~~~~L~i~V~d~~~ 111 (768)
.++|.+...+.+|.|||++.+.+ +......|.|+.++...
T Consensus 54 e~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~ 95 (189)
T cd08695 54 EYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCST 95 (189)
T ss_pred eEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeee
Confidence 46888899999999999999886 44557889999988654
No 281
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=82.55 E-value=12 Score=31.33 Aligned_cols=65 Identities=17% Similarity=0.194 Sum_probs=48.2
Q ss_pred CCcCcEEEEEecCe-eeeeccccCCCCCccccEEEEEEeCCCcEEEEEEEeCCCCCCCCCCCCceEEEEEecccc
Q 004208 383 GTTDAYCVAKYANK-WVRTRTVVDSFDPKWNEQYTWEVYDPYTVITLVVFDNCHLHPGGAKDSRIGKVRIRLSTL 456 (768)
Q Consensus 383 g~~dpyv~v~~g~~-~~~T~~~~~t~nP~wne~~~~~v~~~~~~l~v~v~d~~~~~~~~~~d~~lG~~~i~l~~l 456 (768)
|.++..|+++++|+ ..+|.-..- .+..|++.|.+.+. .+..|+|+||=.|- -.+-|-..+.|.+.
T Consensus 7 ~~~eV~avLklDn~~VgqT~Wk~~-s~q~WDQ~Fti~Ld-RsRELEI~VywrD~-------RslCav~~lrLEd~ 72 (98)
T cd08687 7 GCSEVSAVLKLDNTVVGQTQWKPK-SNQAWDQSFTLELE-RSRELEIAVYWRDW-------RSLCAVKFLKLEDE 72 (98)
T ss_pred cccceEEEEEEcCeEEeecccccc-ccccccceeEEEee-cccEEEEEEEEecc-------hhhhhheeeEhhhh
Confidence 44678899999885 467766443 47889999999884 46789999987664 23667777888773
No 282
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=81.73 E-value=2.2 Score=50.00 Aligned_cols=102 Identities=15% Similarity=0.173 Sum_probs=79.0
Q ss_pred CcCcEEEEEecCe-eeeeccccCC-CCCccccEEEEEEeCCCcEEEEEEEeCCCCCCCCCCCCceEEEEEeccccccCce
Q 004208 384 TTDAYCVAKYANK-WVRTRTVVDS-FDPKWNEQYTWEVYDPYTVITLVVFDNCHLHPGGAKDSRIGKVRIRLSTLETDRI 461 (768)
Q Consensus 384 ~~dpyv~v~~g~~-~~~T~~~~~t-~nP~wne~~~~~v~~~~~~l~v~v~d~~~~~~~~~~d~~lG~~~i~l~~l~~~~~ 461 (768)
..++|+.+.+... ..+|....+. .+|.|.+.|......+...+.+.+-+.+..+ ....+|.+.++...+..+..
T Consensus 137 ~~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~g~v~~~~~~~~~~G----~s~~w~~v~~s~~~~~~~~~ 212 (887)
T KOG1329|consen 137 TLENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAHKAGYVIFRVKGARVPG----WSKRWGRVKISFLQYCSGHR 212 (887)
T ss_pred hccchheeeechhhhhchhhhhcccccchhhhhccccccccccEEEEeecCCcccc----ceeEEEEeccchhhhhcccc
Confidence 4789999999765 4788888877 6999999998888888889999999888754 57899999999999999888
Q ss_pred eeeeEeeeecCCCCcccccEEEEEEEEE
Q 004208 462 YTHSYPLVALLPNGVKKMGEVQLAVRFT 489 (768)
Q Consensus 462 ~~~~~~L~~~~~~g~~~~G~i~l~~~~~ 489 (768)
...|+++........++.-.+.+++.+.
T Consensus 213 ~~~~~~Il~~d~~~~~~~~~~~~~~~~~ 240 (887)
T KOG1329|consen 213 IGGWFPILDNDGKPHQKGSNESLRLGFT 240 (887)
T ss_pred ccceeeeeccCCccccCCcccceEEeeE
Confidence 8899999876543222222344444444
No 283
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=80.78 E-value=9.2 Score=32.87 Aligned_cols=71 Identities=18% Similarity=0.219 Sum_probs=47.4
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEE--ECCe----eeEeeeecCCCCCeeeeEEEEEec--cC-CCceEEEEEEEcCC
Q 004208 41 LYVRIVRARDLQVNQVTGTCDPYVEVK--IGNY----KGTTIPFEKKLNPEWNQVFAFTKE--RL-QAISVELLVKDKMI 111 (768)
Q Consensus 41 L~V~i~~a~~L~~~d~~g~~dPyv~v~--~~~~----~~~T~~~~~t~nP~Wne~f~f~~~--~~-~~~~L~i~V~d~~~ 111 (768)
+.+++....+.........++-||.+. .|++ ...|+.+.....+.|||...|++. ++ .+..|.|.||+...
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~~ 92 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVKN 92 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEeeC
Confidence 667777777776554333357787774 4553 235655555566999999999853 33 36789999998653
No 284
>PF11696 DUF3292: Protein of unknown function (DUF3292); InterPro: IPR021709 This eukaryotic family of proteins has no known function.
Probab=80.54 E-value=4.4 Score=46.16 Aligned_cols=56 Identities=29% Similarity=0.480 Sum_probs=43.8
Q ss_pred HHHHHHHHHhhhccccCchhHHHHHHHHHHHHHHHHHHhHHhhhhhhheecccCCCccC
Q 004208 689 DLDSQLERLQSLIDWRDPRATAMFSIFCLMAAVVFYIVPLWILLLFAGPFVMRHPRFRI 747 (768)
Q Consensus 689 ~~a~~~e~~~~l~~w~~p~~t~~~~~~l~~~~~v~~~vP~r~i~l~~g~~~~r~P~~r~ 747 (768)
.++.+..++.-|.+|++|+.|..|+++.+++.+.=+++|.-+.+|+..+ .+|+.|.
T Consensus 107 ~~~~~~khi~RLrSW~eprRT~~fc~vYf~aW~~dll~p~~~~~L~~li---~~P~~r~ 162 (642)
T PF11696_consen 107 GLAAFIKHIARLRSWREPRRTAAFCAVYFIAWLLDLLVPAFFAFLIALI---LSPPARS 162 (642)
T ss_pred HHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCccccc
Confidence 4556667778889999999999999999999888888998777766544 4466664
No 285
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=79.53 E-value=11 Score=35.86 Aligned_cols=70 Identities=13% Similarity=0.226 Sum_probs=54.5
Q ss_pred CCCcEEEEEECCe-eeEeeeecC--CCCCeeeeEEEEEeccCCCceEEEEEEEcCCCCCceeEEEEEcCCCCCC
Q 004208 59 TCDPYVEVKIGNY-KGTTIPFEK--KLNPEWNQVFAFTKERLQAISVELLVKDKMIVNGDFIGKIKIDMPDIPK 129 (768)
Q Consensus 59 ~~dPyv~v~~~~~-~~~T~~~~~--t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~~~d~~lG~~~i~l~~l~~ 129 (768)
...-|+++.++++ ..+|+...- +..-.|||.|.+.+... -..|.++||......+..|+++.+++-....
T Consensus 36 ~~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~-Pesi~l~i~E~~~~~~~~la~v~vpvP~~~~ 108 (168)
T PF15625_consen 36 KTRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRW-PESIKLEIYEKSGLSDRLLAEVFVPVPGSTV 108 (168)
T ss_pred heeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecC-CCEEEEEEEEccCccceEEEEEEeeCCCCcc
Confidence 3467899999985 456655433 33356899999998775 6789999999988899999999999876643
No 286
>PF06398 Pex24p: Integral peroxisomal membrane peroxin; InterPro: IPR010482 Peroxisomes play diverse roles in the cell, compartmentalising many activities related to lipid metabolism and functioning in the decomposition of toxic hydrogen peroxide. Sequence similarity was identified between two hypothetical proteins and the peroxin integral membrane protein Pex24p [].
Probab=78.83 E-value=4 Score=44.29 Aligned_cols=46 Identities=17% Similarity=0.368 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHH---HHHhhhccccCchhHHHHHHHHHHHHHHHHH
Q 004208 680 AARMVTLNGDLDSQL---ERLQSLIDWRDPRATAMFSIFCLMAAVVFYI 725 (768)
Q Consensus 680 ~~~vQ~~l~~~a~~~---e~~~~l~~w~~p~~t~~~~~~l~~~~~v~~~ 725 (768)
..++-..++.+-.++ +++.++++|++|..|..+++++..+++..++
T Consensus 12 ~~~l~~~l~~~f~~~~~~d~vl~il~W~~p~~t~~~L~l~t~~~l~p~l 60 (359)
T PF06398_consen 12 FPRLSSRLGPIFPFQLILDRVLRILTWTNPDYTLSFLLLYTFLCLNPYL 60 (359)
T ss_pred hHHHHHHHHHhhHHHHHHHHHHHeEEeCCCCcchHHHHHHHHHHHHHHH
Confidence 335555566666666 8899999999999887766666666555444
No 287
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=77.86 E-value=7.4 Score=37.73 Aligned_cols=58 Identities=10% Similarity=0.161 Sum_probs=34.3
Q ss_pred eeeeccccCCCCCccccEEEEEEeC---CCcEEEEEEEeCCCCCCCCCCCCceEEEEEeccc
Q 004208 397 WVRTRTVVDSFDPKWNEQYTWEVYD---PYTVITLVVFDNCHLHPGGAKDSRIGKVRIRLST 455 (768)
Q Consensus 397 ~~~T~~~~~t~nP~wne~~~~~v~~---~~~~l~v~v~d~~~~~~~~~~d~~lG~~~i~l~~ 455 (768)
.+.|.+.+++.+|.|+|++-+.+.. +...|.+++++-..-. +..++..+|.+.+||-+
T Consensus 60 ~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~-~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 60 SYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKE-SKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp -EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SS-SS-SS-EEEEEEEESB-
T ss_pred EEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeecccc-ccCccceeEEEEEEeee
Confidence 4778888889999999999998874 3458999999866521 01122799999999987
No 288
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=77.81 E-value=30 Score=32.92 Aligned_cols=88 Identities=15% Similarity=0.229 Sum_probs=56.8
Q ss_pred CCCcEEEEEECCe-EEeeecccC-CCCCCcccceEEEEecCCCCCcEEEEEEeccCCCCCceeEEEEEeccccccccCCC
Q 004208 220 NPEVFIKAIFGNV-VLKTTVSAK-KTVNPTWNEDLMFVAAEPFDDPLILTVEDKLGDNKEECLGRLVLPLSKAGKRFLPL 297 (768)
Q Consensus 220 ~~dpyV~v~lg~~-~~~T~~i~~-~t~nP~wne~f~f~~~~~~~~~L~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~ 297 (768)
+..-|+++.++++ ..+|+...- ..-.-.|||.|.+.+.. .-+.|.++||.... ..+..|+++.+++-.........
T Consensus 36 ~~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~-~Pesi~l~i~E~~~-~~~~~la~v~vpvP~~~~~~~~~ 113 (168)
T PF15625_consen 36 KTRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITR-WPESIKLEIYEKSG-LSDRLLAEVFVPVPGSTVHTSTD 113 (168)
T ss_pred heeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEec-CCCEEEEEEEEccC-ccceEEEEEEeeCCCCccccccc
Confidence 4567899999765 445554332 12334578989988866 56789999999766 67889999999986544221111
Q ss_pred CCCceeEEcccC
Q 004208 298 PAAAIWYNLERN 309 (768)
Q Consensus 298 ~~~~~w~~L~~~ 309 (768)
.....|+.+...
T Consensus 114 ~~~~~~~eFsS~ 125 (168)
T PF15625_consen 114 NVPLEEYEFSSD 125 (168)
T ss_pred CCceEeEEEcCC
Confidence 114456655443
No 289
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=76.67 E-value=6.7 Score=34.17 Aligned_cols=95 Identities=16% Similarity=0.117 Sum_probs=50.3
Q ss_pred EEEEEECC-eeeEeeeecCCCCCeeeeEEEEEecc-------CCCceEEEEEEEcCCCCCceeEEEEEcCCCCCCCCCCC
Q 004208 63 YVEVKIGN-YKGTTIPFEKKLNPEWNQVFAFTKER-------LQAISVELLVKDKMIVNGDFIGKIKIDMPDIPKRVPPD 134 (768)
Q Consensus 63 yv~v~~~~-~~~~T~~~~~t~nP~Wne~f~f~~~~-------~~~~~L~i~V~d~~~~~d~~lG~~~i~l~~l~~~~~~~ 134 (768)
||.+.+-+ +...|.++. +.||.+|.+-.|.+.. +++..+.++++..-......+|.+.+++.++.....
T Consensus 2 Fct~dFydfEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g~d~~tla~~~i~l~~ll~~~~-- 78 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALGSDFETLAAGQISLRPLLESNG-- 78 (107)
T ss_dssp EEEE-STT---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-SS-EEEEEEEEE--SHHHH--S--
T ss_pred EEEEEeeceeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeeccCCeEEEEEEEeechhhhcCCC--
Confidence 45555555 445666665 7899999999888642 346889999998774477899999999999874421
Q ss_pred CCCCCeEEEcccCCCCccceEEEEEEEE
Q 004208 135 SPLAPEWKRLEAKDGSRARGELMFAIWF 162 (768)
Q Consensus 135 ~~~~~~w~~L~~~~~~~~~G~i~l~i~~ 162 (768)
.....-..|.+..++ ..|.|.+.+..
T Consensus 79 -~~i~~~~~l~g~~~~-~~g~l~y~~rl 104 (107)
T PF11618_consen 79 -ERIHGSATLVGVSGE-DFGTLEYWIRL 104 (107)
T ss_dssp ---EEEEEEE-BSSS--TSEEEEEEEEE
T ss_pred -ceEEEEEEEeccCCC-eEEEEEEEEEe
Confidence 112344556555554 67888776654
No 290
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=75.23 E-value=31 Score=33.44 Aligned_cols=55 Identities=18% Similarity=0.262 Sum_probs=36.7
Q ss_pred eEEeeecccCCCCCCcccceEEEEecCC--CCCcEEEEEEeccCCCC--CceeEEEEEec
Q 004208 232 VVLKTTVSAKKTVNPTWNEDLMFVAAEP--FDDPLILTVEDKLGDNK--EECLGRLVLPL 287 (768)
Q Consensus 232 ~~~~T~~i~~~t~nP~wne~f~f~~~~~--~~~~L~i~V~d~d~~~~--d~~lG~~~i~l 287 (768)
..++|-+..+ +.+|.|+|++.+.+... ....|.|+.++.....+ ...+|-.-++|
T Consensus 53 se~~S~V~yH-~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL 111 (189)
T cd08695 53 SEYRSFVLYH-NNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPL 111 (189)
T ss_pred ceEEEEEEEc-CCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEee
Confidence 3568888887 89999999999887654 34578888876432111 13455555554
No 291
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=75.08 E-value=0.88 Score=50.54 Aligned_cols=156 Identities=14% Similarity=0.137 Sum_probs=89.9
Q ss_pred CCCcEEEEEECCeEEeeecccCCCCCCcccceEEEEecCCCCCcEEEEEEeccCCCCCceeEEEEEeccccccccCCCCC
Q 004208 220 NPEVFIKAIFGNVVLKTTVSAKKTVNPTWNEDLMFVAAEPFDDPLILTVEDKLGDNKEECLGRLVLPLSKAGKRFLPLPA 299 (768)
Q Consensus 220 ~~dpyV~v~lg~~~~~T~~i~~~t~nP~wne~f~f~~~~~~~~~L~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~ 299 (768)
..++++...++.+..+|+...+ +.+|.|||. .|...+-+.. ..-...++|.+..++++-.....-...
T Consensus 304 ~~~~~~itsf~~~~frt~~~~~-~e~piyNe~-~~E~~~Fqsn----------~~l~~kiv~~~~~~lndS~A~f~vq~~ 371 (975)
T KOG2419|consen 304 KDKWLAITSFGEQTFRTEISDD-TEKPIYNED-EREDSDFQSN----------RYLGNKIVGYCELDLNDSYANFVVQRA 371 (975)
T ss_pred CCCchheeecchhhhhhhhhcc-ccccccccc-ccccccchhh----------HHHhhhccccccccccchhhhhhhhhh
Confidence 4578899999999999999887 999999997 5544332111 111234666777766652211000000
Q ss_pred CceeEEcccCccCccccccccccceEEEEEecCCCcccccCcccccCccccccccCCCCeeeEEEEEEEEecCCCCCCCC
Q 004208 300 AAIWYNLERNIANGEEKKDVRFASRICLRFSLDGGYHVFDEATNYSSDLRSTMKQLWPPVIGVLELGILSAKELLPMKSR 379 (768)
Q Consensus 300 ~~~w~~L~~~~~~g~~~~~~~~~g~i~l~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~l~v~v~~a~~L~~~~~~ 379 (768)
....+...+ ....+.+.+..-..+++++.++.
T Consensus 372 ~sn~~~~~p------------------------------------------------E~~~~sfnl~~~a~sn~~a~r~~ 403 (975)
T KOG2419|consen 372 KSNFFISEP------------------------------------------------ESTCKSFNLLDPASSNLPALRNR 403 (975)
T ss_pred hccccccCc------------------------------------------------cccceEEEeecCCcccchhhhhc
Confidence 000000000 01122233333333455444322
Q ss_pred C--CCCCcCcEEEEEecCeeeeeccccCCCCCccccEEEEEEeCCCc--EEEEEEEeCCC
Q 004208 380 D--GRGTTDAYCVAKYANKWVRTRTVVDSFDPKWNEQYTWEVYDPYT--VITLVVFDNCH 435 (768)
Q Consensus 380 ~--~~g~~dpyv~v~~g~~~~~T~~~~~t~nP~wne~~~~~v~~~~~--~l~v~v~d~~~ 435 (768)
+ .....||+.++.+|...+.+.+-....+|.+++.-.+.+.+-.. .+.+.+++...
T Consensus 404 ~S~T~~em~~~~~~~vG~~~~s~sie~~v~~~~c~~~~~~s~~d~~~~fk~sf~~~~~l~ 463 (975)
T KOG2419|consen 404 LSKTNYEMDPFIVIVVGSRFFSCSIEDPVETEECFAKRILSIVDYEEDFKLSFSEFSDLS 463 (975)
T ss_pred cCccccccCchhHhhhhhHHhhhhhhccccchhhhhhhcccccccccCceEeeehHHHHH
Confidence 2 23578999999999988888877778889888876666666433 55566665544
No 292
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=74.68 E-value=8.8 Score=37.17 Aligned_cols=55 Identities=9% Similarity=0.050 Sum_probs=32.8
Q ss_pred eeEeeeecCCCCCeeeeEEEEEec--cCCCceEEEEEEEcCCC--C--CceeEEEEEcCCC
Q 004208 72 KGTTIPFEKKLNPEWNQVFAFTKE--RLQAISVELLVKDKMIV--N--GDFIGKIKIDMPD 126 (768)
Q Consensus 72 ~~~T~~~~~t~nP~Wne~f~f~~~--~~~~~~L~i~V~d~~~~--~--d~~lG~~~i~l~~ 126 (768)
...|.+...+.+|.|+|+|.+.+. ......|.|++++...- + +..+|.+.++|.+
T Consensus 60 ~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 60 SYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp -EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred EEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 356777788899999999999864 33467899999997654 2 2677887777766
No 293
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=73.77 E-value=22 Score=31.02 Aligned_cols=93 Identities=17% Similarity=0.245 Sum_probs=49.9
Q ss_pred EEEEEecC-eeeeeccccCCCCCccccEEEEEEeCC--------CcEEEEEEEeCCCCCCCCCCCCceEEEEEecccccc
Q 004208 388 YCVAKYAN-KWVRTRTVVDSFDPKWNEQYTWEVYDP--------YTVITLVVFDNCHLHPGGAKDSRIGKVRIRLSTLET 458 (768)
Q Consensus 388 yv~v~~g~-~~~~T~~~~~t~nP~wne~~~~~v~~~--------~~~l~v~v~d~~~~~~~~~~d~~lG~~~i~l~~l~~ 458 (768)
||.+..-. +...|.++. ..+|.+|-+..|.|... ...+.|+++.... ...+.+|.++|++..+..
T Consensus 2 Fct~dFydfEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g-----~d~~tla~~~i~l~~ll~ 75 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALG-----SDFETLAAGQISLRPLLE 75 (107)
T ss_dssp EEEE-STT---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-S-----S-EEEEEEEEE--SHHHH
T ss_pred EEEEEeeceeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeecc-----CCeEEEEEEEeechhhhc
Confidence 56665543 556677666 67999998888888732 2489999987653 246799999999999885
Q ss_pred Cc--eeeeeEeeeecCCCCcccccEEEEEEEEE
Q 004208 459 DR--IYTHSYPLVALLPNGVKKMGEVQLAVRFT 489 (768)
Q Consensus 459 ~~--~~~~~~~L~~~~~~g~~~~G~i~l~~~~~ 489 (768)
.. .+...-.|.+.. |. ..|.|+..+++.
T Consensus 76 ~~~~~i~~~~~l~g~~--~~-~~g~l~y~~rl~ 105 (107)
T PF11618_consen 76 SNGERIHGSATLVGVS--GE-DFGTLEYWIRLR 105 (107)
T ss_dssp --S--EEEEEEE-BSS--S--TSEEEEEEEEEE
T ss_pred CCCceEEEEEEEeccC--CC-eEEEEEEEEEec
Confidence 33 344555555443 23 569999888874
No 294
>PF08151 FerI: FerI (NUC094) domain; InterPro: IPR012968 The ferlin gene family are characterised by multiple tandem C2 domains and a C-terminal transmembrane domain. They are found in a wide range of species and their function remains unknown, however, mutations in its two most well-characterised members, dysferlin and otoferlin, have been implicated in human disease []. This domain is present in proteins of the Ferlin family, which includes Otoferlin, Myoferlin and Dysferlin. It is often located between two C2 domains [].
Probab=71.73 E-value=7.4 Score=31.11 Aligned_cols=48 Identities=23% Similarity=0.340 Sum_probs=35.3
Q ss_pred cCCCCCCCCCCCCCCCCeEEEcccCCCC--ccceEEEEEEEEcccCCccccc
Q 004208 123 DMPDIPKRVPPDSPLAPEWKRLEAKDGS--RARGELMFAIWFGTQADEAFSS 172 (768)
Q Consensus 123 ~l~~l~~~~~~~~~~~~~w~~L~~~~~~--~~~G~i~l~i~~~~~~d~~~~~ 172 (768)
++..+..+ +++....+|..|.++... ..+|.|.+++.+...+|.....
T Consensus 2 DlgtVY~q--P~H~~~~KW~~L~dP~D~~~G~kGYlKv~i~Vlg~GD~~~~~ 51 (72)
T PF08151_consen 2 DLGTVYNQ--PDHQFYRKWALLTDPDDTSAGVKGYLKVDISVLGPGDEPPVE 51 (72)
T ss_pred ceeeeecC--CCCeeEeceEEecCCCCCccCCceEEEEEEEEEcCCCcCCCC
Confidence 34444443 467778999999988743 3789999999998888775443
No 295
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=70.85 E-value=48 Score=32.20 Aligned_cols=55 Identities=16% Similarity=0.205 Sum_probs=37.1
Q ss_pred eEEeeecccCCCCCCcccceEEEEecCC--CCCcEEEEEEeccCC-CC---CceeEEEEEec
Q 004208 232 VVLKTTVSAKKTVNPTWNEDLMFVAAEP--FDDPLILTVEDKLGD-NK---EECLGRLVLPL 287 (768)
Q Consensus 232 ~~~~T~~i~~~t~nP~wne~f~f~~~~~--~~~~L~i~V~d~d~~-~~---d~~lG~~~i~l 287 (768)
..++|-+..+ +.+|.|+|++.+.+... ....|.|++++.... .+ +..+|-.-++|
T Consensus 53 se~~S~V~Yh-~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL 113 (196)
T cd08694 53 DEYKSVIYYQ-VDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKL 113 (196)
T ss_pred eeEEEEEEee-cCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEee
Confidence 4678888777 88999999999887644 455788998775321 11 23455555555
No 296
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=68.88 E-value=30 Score=38.79 Aligned_cols=118 Identities=16% Similarity=0.256 Sum_probs=76.6
Q ss_pred EEEEEEEEecCCCCCCCCCCCCCcCcEEEEEecCeeeeeccccCCCCCccccEEEEEEeCCCcEEEEEEEeCCCCCCCCC
Q 004208 362 VLELGILSAKELLPMKSRDGRGTTDAYCVAKYANKWVRTRTVVDSFDPKWNEQYTWEVYDPYTVITLVVFDNCHLHPGGA 441 (768)
Q Consensus 362 ~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~~~~~T~~~~~t~nP~wne~~~~~v~~~~~~l~v~v~d~~~~~~~~~ 441 (768)
.++|.|.+.+||+... ..-=.||..++.+.+.+|.-.- ...|.|..+=.|.-.+|-..++|.+|-+..-. -.-
T Consensus 342 smevvvmevqglksva-----pnrivyctmevegeklqtdqae-askp~wgtqgdfstthplpvvkvklftestgv-lal 414 (1218)
T KOG3543|consen 342 SMEVVVMEVQGLKSVA-----PNRIVYCTMEVEGEKLQTDQAE-ASKPKWGTQGDFSTTHPLPVVKVKLFTESTGV-LAL 414 (1218)
T ss_pred eeeEEEeeeccccccC-----CCeeEEEEEEecccccccchhh-hcCCCCCcCCCcccCCCCceeEEEEEeeccee-EEe
Confidence 4788999999997641 1234699999999988888653 45899998888888888889999999876410 013
Q ss_pred CCCceEEEEEeccccccCceeeeeEeeeecCCCCcccccEEEEEEEEE
Q 004208 442 KDSRIGKVRIRLSTLETDRIYTHSYPLVALLPNGVKKMGEVQLAVRFT 489 (768)
Q Consensus 442 ~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~ 489 (768)
.|.-||+|.+.-..=.. .-..|+.+.-++.... ..=+|+|.++..
T Consensus 415 edkelgrvil~ptpns~--ks~ewh~mtvpknsqd-qdlkiklavrmd 459 (1218)
T KOG3543|consen 415 EDKELGRVILQPTPNSA--KSPEWHTMTVPKNSQD-QDLKIKLAVRMD 459 (1218)
T ss_pred echhhCeEEEecCCCCc--CCccceeeecCCCCcC-ccceEEEEEecc
Confidence 67889999885432111 1135665543321111 112455555554
No 297
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=64.38 E-value=81 Score=34.11 Aligned_cols=107 Identities=17% Similarity=0.207 Sum_probs=64.7
Q ss_pred CcCcEEEEEecCeeeeeccccC----CCC-Cccc-cEEEEEEe--------CC------CcEEEEEEEeCCCCC-CC-CC
Q 004208 384 TTDAYCVAKYANKWVRTRTVVD----SFD-PKWN-EQYTWEVY--------DP------YTVITLVVFDNCHLH-PG-GA 441 (768)
Q Consensus 384 ~~dpyv~v~~g~~~~~T~~~~~----t~n-P~wn-e~~~~~v~--------~~------~~~l~v~v~d~~~~~-~~-~~ 441 (768)
.+-.||+|++.+--.+|..+.= +.+ |.-+ -.-.|.+. .+ ...|+|.||-.+.-. -| +.
T Consensus 35 sspCfC~IrL~~fP~Qta~vPLi~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~i~VY~Gr~G~tCGv~~ 114 (460)
T PF06219_consen 35 SSPCFCEIRLKGFPSQTAPVPLISSSEPEPPDSHSLAASFHLDKSDLRRLLAKPCFYSPRPCLEISVYTGRRGSTCGVGN 114 (460)
T ss_pred CCCeEEEEecCCCCccceeeeeccCCCCCCCCcCCcceEEecCHHHHHHHhCCCccccCCceEEEEEEECCCCCcccccc
Confidence 4677999999998777776631 112 1211 12344432 11 147999999966410 00 13
Q ss_pred CCCceEEEEEecccccc--Cc---eeeeeEeeeecCCC-CcccccEEEEEEEEEec
Q 004208 442 KDSRIGKVRIRLSTLET--DR---IYTHSYPLVALLPN-GVKKMGEVQLAVRFTCS 491 (768)
Q Consensus 442 ~d~~lG~~~i~l~~l~~--~~---~~~~~~~L~~~~~~-g~~~~G~i~l~~~~~~~ 491 (768)
+..+||++.|+|. +.. ++ .++.|..+-..+.+ +.+...++||.++.+++
T Consensus 115 ~~klLG~v~vpld-l~~ae~kp~v~hnGWi~iGk~~~~~~~~~~aeLHl~Vr~EpD 169 (460)
T PF06219_consen 115 SGKLLGKVRVPLD-LKWAEGKPVVFHNGWISIGKNKQGSGKSPSAELHLVVRAEPD 169 (460)
T ss_pred cceEEEEEEEEec-cccccCCeeEEEccceecCCCCCCCCCCCcceEEEEEeccCC
Confidence 6689999999987 332 22 35778887544322 22235789999998866
No 298
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=62.75 E-value=46 Score=37.41 Aligned_cols=113 Identities=16% Similarity=0.242 Sum_probs=78.1
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcCCC----CC
Q 004208 39 EFLYVRIVRARDLQVNQVTGTCDPYVEVKIGNYKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIV----NG 114 (768)
Q Consensus 39 ~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~~----~d 114 (768)
--+.|-|.+..+|+.-..+ -=.||.+.+.|++-+|.... .+-|.|+-.-.|.-..+ -..+.+.+|..... .|
T Consensus 341 ~smevvvmevqglksvapn--rivyctmevegeklqtdqae-askp~wgtqgdfstthp-lpvvkvklftestgvlaled 416 (1218)
T KOG3543|consen 341 LSMEVVVMEVQGLKSVAPN--RIVYCTMEVEGEKLQTDQAE-ASKPKWGTQGDFSTTHP-LPVVKVKLFTESTGVLALED 416 (1218)
T ss_pred eeeeEEEeeeccccccCCC--eeEEEEEEecccccccchhh-hcCCCCCcCCCcccCCC-CceeEEEEEeecceeEEeec
Confidence 3467788888888754322 23699999999998887653 46799999888886665 56788899887764 78
Q ss_pred ceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCCCc-cceEEEEEEEE
Q 004208 115 DFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGSR-ARGELMFAIWF 162 (768)
Q Consensus 115 ~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~-~~G~i~l~i~~ 162 (768)
+.||++-+.- .+++...+.|+.+.-+.+.. ..=.|.+.+..
T Consensus 417 kelgrvil~p-------tpns~ks~ewh~mtvpknsqdqdlkiklavrm 458 (1218)
T KOG3543|consen 417 KELGRVILQP-------TPNSAKSPEWHTMTVPKNSQDQDLKIKLAVRM 458 (1218)
T ss_pred hhhCeEEEec-------CCCCcCCccceeeecCCCCcCccceEEEEEec
Confidence 8889876542 23344468899998776542 22344444444
No 299
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=62.51 E-value=94 Score=32.57 Aligned_cols=121 Identities=13% Similarity=0.156 Sum_probs=80.5
Q ss_pred cccccccccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeeecCCCCC--eeeeEEEEEeccCCCceEEE
Q 004208 27 RLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGNYKGTTIPFEKKLNP--EWNQVFAFTKERLQAISVEL 104 (768)
Q Consensus 27 ~~~~~~~~~~~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP--~Wne~f~f~~~~~~~~~L~i 104 (768)
.++.-++. +...|.|.|.+-.++.. ...-|+.+..|....+|..+.-+..- .-.|.....+..- ...|++
T Consensus 48 YYtGIHnH--RkF~LLVeI~EI~~i~k-----~khiyIef~~Gr~d~TT~~IpTsKK~RI~IqqRV~IkIRQc-DnTLkI 119 (508)
T PTZ00447 48 YFSGLHNY--RTFYLLVKINEIFNINK-----YKHIYIIFSTDKYDFTTDEIPTNKKNRIHIDQRVDIKIRQC-DETLRV 119 (508)
T ss_pred hhhccccc--ceeeEEEEehhhhcccc-----ceeEEEEEEcCceEEEccccccCcCceEEEeeeeeeeeeec-CceEEE
Confidence 44555554 35678899988877643 34789999999988888555333222 2333333334333 678999
Q ss_pred EEEEcCCCCCceeEEEEEcCCC-CCCCCCCCCCCCCeEEEcccCCCCccceEEEEEEE
Q 004208 105 LVKDKMIVNGDFIGKIKIDMPD-IPKRVPPDSPLAPEWKRLEAKDGSRARGELMFAIW 161 (768)
Q Consensus 105 ~V~d~~~~~d~~lG~~~i~l~~-l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~i~ 161 (768)
.||-....+..-||.+.+.+.. +.... -...+||.+... +...+.|.+|+.
T Consensus 120 ~lfKKkLvkk~hIgdI~InIn~dIIdk~----FPKnkWy~c~kD--Gq~~cRIqLSFh 171 (508)
T PTZ00447 120 DLFTTKLTKKVHIGQIKIDINASVISKS----FPKNEWFVCFKD--GQEICKVQMSFY 171 (508)
T ss_pred EEEeccccceeEEEEEEecccHHHHhcc----CCccceEEEecC--CceeeeEEEEeh
Confidence 9998887789999999999874 32221 225799999542 335688887764
No 300
>cd05137 RasGAP_CLA2_BUD2 CLA2/BUD2 functions as a GTPase-activating protein (GAP) for BUD1/RSR1 and is necessary for proper bud-site selection in yeast. BUD2 has sequence similarity to the catalytic domain of RasGAPs, and stimulates the hydrolysis of BUD1-GTP to BUD1-GDP. Elimination of Bud2p activity by mutation causes a random budding pattern with no growth defect. Overproduction of Bud2p also alters the budding pattern.
Probab=56.12 E-value=14 Score=40.40 Aligned_cols=45 Identities=18% Similarity=0.234 Sum_probs=34.0
Q ss_pred ceEEEEEeccc-cccCceeeeeEeeeecCCCCcccccEEEEEEEEEec
Q 004208 445 RIGKVRIRLST-LETDRIYTHSYPLVALLPNGVKKMGEVQLAVRFTCS 491 (768)
Q Consensus 445 ~lG~~~i~l~~-l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~~~ 491 (768)
.+|.+.|++.. +.++.....|||+.+....+. ..|.+ +++++...
T Consensus 1 ~~G~v~i~~~~~~~~~~~~e~w~~i~~~~~~~~-~~~~l-lk~~~~~~ 46 (395)
T cd05137 1 LVGRIDITLEMILDRGLDKETWLPIFDVDNKSV-GEGLI-IKVSSEEN 46 (395)
T ss_pred CeeEEEeehhhhccCCCCceeeeccccCCCCCc-CcceE-EEEEeeec
Confidence 48999999999 677777789999988654333 34777 77777654
No 301
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=55.13 E-value=62 Score=34.99 Aligned_cols=104 Identities=14% Similarity=0.283 Sum_probs=61.4
Q ss_pred CCCcEEEEEECCeeeEeeeecC----CCCC-e---eeeEEEEEecc---CC--------CceEEEEEEEcCCC-------
Q 004208 59 TCDPYVEVKIGNYKGTTIPFEK----KLNP-E---WNQVFAFTKER---LQ--------AISVELLVKDKMIV------- 112 (768)
Q Consensus 59 ~~dPyv~v~~~~~~~~T~~~~~----t~nP-~---Wne~f~f~~~~---~~--------~~~L~i~V~d~~~~------- 112 (768)
++..||+|++.+.-.+|..+.= +.+| . ---.|+++..+ +. ...|+|.||.-...
T Consensus 35 sspCfC~IrL~~fP~Qta~vPLi~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~i~VY~Gr~G~tCGv~~ 114 (460)
T PF06219_consen 35 SSPCFCEIRLKGFPSQTAPVPLISSSEPEPPDSHSLAASFHLDKSDLRRLLAKPCFYSPRPCLEISVYTGRRGSTCGVGN 114 (460)
T ss_pred CCCeEEEEecCCCCccceeeeeccCCCCCCCCcCCcceEEecCHHHHHHHhCCCccccCCceEEEEEEECCCCCcccccc
Confidence 3566999999996666655421 1111 1 22456665322 11 14699999995532
Q ss_pred CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCCC---ccceEEEEEEEEc
Q 004208 113 NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGS---RARGELMFAIWFG 163 (768)
Q Consensus 113 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~---~~~G~i~l~i~~~ 163 (768)
+..+||.++++|. +.............|..+-..... ....+|++.+...
T Consensus 115 ~~klLG~v~vpld-l~~ae~kp~v~hnGWi~iGk~~~~~~~~~~aeLHl~Vr~E 167 (460)
T PF06219_consen 115 SGKLLGKVRVPLD-LKWAEGKPVVFHNGWISIGKNKQGSGKSPSAELHLVVRAE 167 (460)
T ss_pred cceEEEEEEEEec-cccccCCeeEEEccceecCCCCCCCCCCCcceEEEEEecc
Confidence 6689999999987 332222122345779998765431 2356777766554
No 302
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=54.88 E-value=1.5e+02 Score=31.22 Aligned_cols=113 Identities=10% Similarity=0.046 Sum_probs=76.1
Q ss_pred CeeeEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEecCeeeeeccccCCCCC--ccccEEEEEEeCCCcEEEEEEEeCCC
Q 004208 358 PVIGVLELGILSAKELLPMKSRDGRGTTDAYCVAKYANKWVRTRTVVDSFDP--KWNEQYTWEVYDPYTVITLVVFDNCH 435 (768)
Q Consensus 358 ~~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~~~~~T~~~~~t~nP--~wne~~~~~v~~~~~~l~v~v~d~~~ 435 (768)
...-.|-|.|.+..++.. ....|+.+..|....+|..+.-+..= .-.+.....++.-...|+|.+|-...
T Consensus 55 HRkF~LLVeI~EI~~i~k--------~khiyIef~~Gr~d~TT~~IpTsKK~RI~IqqRV~IkIRQcDnTLkI~lfKKkL 126 (508)
T PTZ00447 55 YRTFYLLVKINEIFNINK--------YKHIYIIFSTDKYDFTTDEIPTNKKNRIHIDQRVDIKIRQCDETLRVDLFTTKL 126 (508)
T ss_pred cceeeEEEEehhhhcccc--------ceeEEEEEEcCceEEEccccccCcCceEEEeeeeeeeeeecCceEEEEEEeccc
Confidence 344557788877776644 46789999999999999766432221 22355666677777899999998765
Q ss_pred CCCCCCCCCceEEEEEeccc-cccC-ceeeeeEeeeecCCCCcccccEEEEEEE
Q 004208 436 LHPGGAKDSRIGKVRIRLST-LETD-RIYTHSYPLVALLPNGVKKMGEVQLAVR 487 (768)
Q Consensus 436 ~~~~~~~d~~lG~~~i~l~~-l~~~-~~~~~~~~L~~~~~~g~~~~G~i~l~~~ 487 (768)
. +...||.+.|.+.. +..+ -+.+.||-+... ++..++|.|++.
T Consensus 127 v-----kk~hIgdI~InIn~dIIdk~FPKnkWy~c~kD----Gq~~cRIqLSFh 171 (508)
T PTZ00447 127 T-----KKVHIGQIKIDINASVISKSFPKNEWFVCFKD----GQEICKVQMSFY 171 (508)
T ss_pred c-----ceeEEEEEEecccHHHHhccCCccceEEEecC----CceeeeEEEEeh
Confidence 4 57789999998874 3333 245689988422 223466666654
No 303
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=54.87 E-value=1.3e+02 Score=28.55 Aligned_cols=80 Identities=13% Similarity=0.051 Sum_probs=54.1
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEE----------CCe-EEeeecccCC----CCCCcccceEEEEecCC--C-CCc
Q 004208 202 LRVNVIEAQDLVPKQRNRNPEVFIKAIF----------GNV-VLKTTVSAKK----TVNPTWNEDLMFVAAEP--F-DDP 263 (768)
Q Consensus 202 L~V~v~~a~~L~~~d~~~~~dpyV~v~l----------g~~-~~~T~~i~~~----t~nP~wne~f~f~~~~~--~-~~~ 263 (768)
+.=.|.+|.+.. ..+.||+-.+ +.. ...|.+.... ...-.||.-|++.+... . -..
T Consensus 4 v~G~I~~a~~f~------~~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~ 77 (168)
T PF07162_consen 4 VIGEIESAEGFE------EDNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQ 77 (168)
T ss_pred EEEEEEEEECCC------CCCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCce
Confidence 445677787654 3477888776 223 5677765431 23467898887775433 2 358
Q ss_pred EEEEEEeccCCCCCceeEEEEEec
Q 004208 264 LILTVEDKLGDNKEECLGRLVLPL 287 (768)
Q Consensus 264 L~i~V~d~d~~~~d~~lG~~~i~l 287 (768)
|.|+||..|..+++.+.|...+.|
T Consensus 78 L~l~V~~~D~~gr~~~~GYG~~~l 101 (168)
T PF07162_consen 78 LVLQVYSLDSWGRDRVEGYGFCHL 101 (168)
T ss_pred EEEEEEEEcccCCeEEeEEeEEEe
Confidence 999999999999999988765554
No 304
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=54.38 E-value=41 Score=32.29 Aligned_cols=51 Identities=10% Similarity=-0.043 Sum_probs=33.6
Q ss_pred eeeecCCCCCeeeeEEEEEec--cCCCceEEEEEEEcCCC------CCceeEEEEEcCC
Q 004208 75 TIPFEKKLNPEWNQVFAFTKE--RLQAISVELLVKDKMIV------NGDFIGKIKIDMP 125 (768)
Q Consensus 75 T~~~~~t~nP~Wne~f~f~~~--~~~~~~L~i~V~d~~~~------~d~~lG~~~i~l~ 125 (768)
|.++....+|.|+|+|-+.+. ......|.|++++...- ....+|-+.++|-
T Consensus 56 ~sv~~~~k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~ 114 (178)
T cd08679 56 TSVVYYHKNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLM 114 (178)
T ss_pred EEEEEcCCCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEecc
Confidence 334444489999999999864 22468899999997643 2344555544444
No 305
>KOG1792 consensus Reticulon [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.27 E-value=29 Score=34.73 Aligned_cols=39 Identities=13% Similarity=0.117 Sum_probs=30.2
Q ss_pred HHHHHHHHHhhhccccCchhHHHHHHHHHHHHHHHHHHh
Q 004208 689 DLDSQLERLQSLIDWRDPRATAMFSIFCLMAAVVFYIVP 727 (768)
Q Consensus 689 ~~a~~~e~~~~l~~w~~p~~t~~~~~~l~~~~~v~~~vP 727 (768)
++...+-.++.++.=+|+..+..+.+.+++++.+.-+.-
T Consensus 132 ~in~~l~~l~~ia~~~d~~~~lk~~v~lw~lS~vGs~fn 170 (230)
T KOG1792|consen 132 EINQALSELRDIALGRDLKDFLKVAVGLWILSYVGSLFN 170 (230)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhh
Confidence 556666677788888899999999999998888774433
No 306
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=54.26 E-value=1.1e+02 Score=29.09 Aligned_cols=78 Identities=18% Similarity=0.197 Sum_probs=52.3
Q ss_pred EEEEEEecCCCCCCCCCCCCCcCcEEEEEe--cCee---------eeeccccC-----CCCCccccEEEEEEeC--CC--
Q 004208 364 ELGILSAKELLPMKSRDGRGTTDAYCVAKY--ANKW---------VRTRTVVD-----SFDPKWNEQYTWEVYD--PY-- 423 (768)
Q Consensus 364 ~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~--g~~~---------~~T~~~~~-----t~nP~wne~~~~~v~~--~~-- 423 (768)
.=.|.+|.+... ++-||+-.+ |+.| ..|.+.+. ...-.||.-|++.... +.
T Consensus 5 ~G~I~~a~~f~~---------~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gw 75 (168)
T PF07162_consen 5 IGEIESAEGFEE---------DNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGW 75 (168)
T ss_pred EEEEEEEECCCC---------CCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCC
Confidence 345677887643 467998544 5433 45555532 2356788877776653 32
Q ss_pred cEEEEEEEeCCCCCCCCCCCCceEEEEEecc
Q 004208 424 TVITLVVFDNCHLHPGGAKDSRIGKVRIRLS 454 (768)
Q Consensus 424 ~~l~v~v~d~~~~~~~~~~d~~lG~~~i~l~ 454 (768)
..|.++||..|.++ ++.+.|...+.|-
T Consensus 76 P~L~l~V~~~D~~g----r~~~~GYG~~~lP 102 (168)
T PF07162_consen 76 PQLVLQVYSLDSWG----RDRVEGYGFCHLP 102 (168)
T ss_pred ceEEEEEEEEcccC----CeEEeEEeEEEeC
Confidence 48999999999876 8889988766654
No 307
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=54.25 E-value=45 Score=32.01 Aligned_cols=60 Identities=12% Similarity=0.173 Sum_probs=40.4
Q ss_pred eeeeeccccCCCCCccccEEEEEEeC---CCcEEEEEEEeCCCCCC--CCCCCCceEEEEEeccc
Q 004208 396 KWVRTRTVVDSFDPKWNEQYTWEVYD---PYTVITLVVFDNCHLHP--GGAKDSRIGKVRIRLST 455 (768)
Q Consensus 396 ~~~~T~~~~~t~nP~wne~~~~~v~~---~~~~l~v~v~d~~~~~~--~~~~d~~lG~~~i~l~~ 455 (768)
..+.|.+...+.+|.|+|++-+.+.- +...|.++.++-+.-.. ++.....+|.+-+||-+
T Consensus 54 ~~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~ 118 (179)
T cd08696 54 TEAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR 118 (179)
T ss_pred eeEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeec
Confidence 44778888889999999998888773 33478888888544110 01123567777777753
No 308
>KOG4027 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.05 E-value=60 Score=29.98 Aligned_cols=67 Identities=19% Similarity=0.205 Sum_probs=41.5
Q ss_pred CcCcEEEEEe--cCeeeeeccc-----------cCCCCC-ccccEEEEEEeC--CC--cEEEEEEEeCCCCCCCCCCCCc
Q 004208 384 TTDAYCVAKY--ANKWVRTRTV-----------VDSFDP-KWNEQYTWEVYD--PY--TVITLVVFDNCHLHPGGAKDSR 445 (768)
Q Consensus 384 ~~dpyv~v~~--g~~~~~T~~~-----------~~t~nP-~wne~~~~~v~~--~~--~~l~v~v~d~~~~~~~~~~d~~ 445 (768)
.+|.||+.+. |+.|.-+.-- .+-.|| +||--++...+. |. ..|.+.||-.|.++ +|..
T Consensus 25 ~~dv~~ky~~Vag~DW~~~~Gpqegvsq~s~~~r~~~~~iv~n~Pievt~KstsPygWPqivl~vfg~d~~G----~d~v 100 (187)
T KOG4027|consen 25 ESDVCVKYSTVAGGDWKIINGPQEGVSQSSFSFRGADNQIVINLPIEVTLKSTSPYGWPQIVLNVFGKDHSG----KDCV 100 (187)
T ss_pred CCceEEEEEEEecCCceeccCcccchhhheeccccCCCceEEecceEEEeccCCCCCCceEEEEEecCCcCC----ccee
Confidence 4788888655 6666433321 122233 444333333333 43 38999999999866 9999
Q ss_pred eEEEEEecc
Q 004208 446 IGKVRIRLS 454 (768)
Q Consensus 446 lG~~~i~l~ 454 (768)
.|...|++-
T Consensus 101 ~GYg~~hiP 109 (187)
T KOG4027|consen 101 TGYGMLHIP 109 (187)
T ss_pred eeeeeEecC
Confidence 999888765
No 309
>PF14909 SPATA6: Spermatogenesis-assoc protein 6
Probab=52.09 E-value=1e+02 Score=28.14 Aligned_cols=87 Identities=16% Similarity=0.140 Sum_probs=62.4
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeeecCCCCCeeeeEEEEEe------------ccCCCceEEEEEEE
Q 004208 41 LYVRIVRARDLQVNQVTGTCDPYVEVKIGNYKGTTIPFEKKLNPEWNQVFAFTK------------ERLQAISVELLVKD 108 (768)
Q Consensus 41 L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~Wne~f~f~~------------~~~~~~~L~i~V~d 108 (768)
|.|+-+.|=|.--. ..-|-|..|++-|+..+|+-....--=.++|.|.|.. +.++...+.|+++.
T Consensus 4 L~i~aVTCPGv~L~---~~~~vyL~v~~lg~~~~T~~~ppvFPllfhek~~FeK~F~~~~dp~~l~~~Le~e~~~iELiQ 80 (140)
T PF14909_consen 4 LEIHAVTCPGVWLC---DKGDVYLSVCILGQYKRTRCLPPVFPLLFHEKFRFEKVFPNAVDPAQLADLLEDETVYIELIQ 80 (140)
T ss_pred EEEEEEecCCeEeC---CCCCEEEEEEEcccEeecccCCCcCCeeEeeEEEeEEEecCCCCHHHHHHHhhcCcEEEEEEE
Confidence 56666666554222 2348899999999999998665544446899999972 23456889999988
Q ss_pred cCCCCCceeEEEEEcCCCCCCC
Q 004208 109 KMIVNGDFIGKIKIDMPDIPKR 130 (768)
Q Consensus 109 ~~~~~d~~lG~~~i~l~~l~~~ 130 (768)
...-..+.|+...-++.|+..-
T Consensus 81 l~~~~g~iLA~ye~n~rDfLfP 102 (140)
T PF14909_consen 81 LVPPAGEILAYYEENTRDFLFP 102 (140)
T ss_pred EeCCCCcEEEEEeccccceEcC
Confidence 6655578888888888887543
No 310
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=49.23 E-value=53 Score=31.59 Aligned_cols=40 Identities=5% Similarity=-0.049 Sum_probs=32.1
Q ss_pred eeEeeeecCCCCCeeeeEEEEEec--cCCCceEEEEEEEcCC
Q 004208 72 KGTTIPFEKKLNPEWNQVFAFTKE--RLQAISVELLVKDKMI 111 (768)
Q Consensus 72 ~~~T~~~~~t~nP~Wne~f~f~~~--~~~~~~L~i~V~d~~~ 111 (768)
...|.+...+.+|.|+|++-+.+. ......|.|+.++.+.
T Consensus 55 ~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~ 96 (179)
T cd08696 55 EAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISC 96 (179)
T ss_pred eEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeec
Confidence 467888889999999999998864 3346789999998654
No 311
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=48.68 E-value=4.5 Score=46.16 Aligned_cols=94 Identities=13% Similarity=0.089 Sum_probs=60.9
Q ss_pred CCCcEEEEEECCe-eeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcCCC-CCceeEEEEEcCCCCCCCCCCCCC
Q 004208 59 TCDPYVEVKIGNY-KGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIV-NGDFIGKIKIDMPDIPKRVPPDSP 136 (768)
Q Consensus 59 ~~dPyv~v~~~~~-~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~ 136 (768)
..+||+.|.+.-. ...+.+.+.+.+|.|+++|...+.. ...+.|.|+..... .+.+...+++-.+.+... ..
T Consensus 27 al~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~v~~--~~~~~i~v~~~~~~~~~~~~a~~~~~~e~~k~~----~~ 100 (694)
T KOG0694|consen 27 ALQPYLAVELKVKQGAENMTKVELRIPELRETFHVEVVA--GGAKNIIVLLKSPDPKALSEAQLSLQEESQKLL----AL 100 (694)
T ss_pred hhhhhheeccceeecccccCCCCCCCchhhhheeeeeec--CCceEEEEEecCCcchhhHHHhHHHHHHHHHHH----hh
Confidence 4689988887753 3456667889999999999999766 56788899887644 444444444444443321 11
Q ss_pred CCCeEEEcccCCCCccceEEEEEEEEcc
Q 004208 137 LAPEWKRLEAKDGSRARGELMFAIWFGT 164 (768)
Q Consensus 137 ~~~~w~~L~~~~~~~~~G~i~l~i~~~~ 164 (768)
....|..++. .|++...+.+..
T Consensus 101 ~~~~w~~~~~------~g~~~~~~~~~~ 122 (694)
T KOG0694|consen 101 EQRLWVLIEE------LGTLLKPAALTG 122 (694)
T ss_pred hhhhcccccc------ccceeeeecccC
Confidence 2356776543 377777665543
No 312
>PF04842 DUF639: Plant protein of unknown function (DUF639); InterPro: IPR006927 The sequences in this family are plant proteins of unknown function.
Probab=48.03 E-value=22 Score=40.89 Aligned_cols=60 Identities=27% Similarity=0.308 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHhhhccccCchhHHHHHHHHHHHH---HHHHHHhHHhhhhhhheecccC
Q 004208 683 MVTLNGDLDSQLERLQSLIDWRDPRATAMFSIFCLMAA---VVFYIVPLWILLLFAGPFVMRH 742 (768)
Q Consensus 683 vQ~~l~~~a~~~e~~~~l~~w~~p~~t~~~~~~l~~~~---~v~~~vP~r~i~l~~g~~~~r~ 742 (768)
++.+|--+..++.+++.+..|.+|..|..|+++.+.+- -+.|++|.-+++++.+.-.+||
T Consensus 492 ~kELL~Pl~~i~~~~~~l~~We~P~kt~~Fl~~~~~iI~r~wl~Y~~p~~Ll~~a~~Ml~~r~ 554 (683)
T PF04842_consen 492 MKELLFPLIEIAKWLQKLASWEEPLKTLVFLALFLYIIYRGWLGYIFPAFLLFSAVFMLWLRY 554 (683)
T ss_pred HHhccccHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555566778889999999999999987665554332 2457788776666655545555
No 313
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=47.00 E-value=42 Score=39.83 Aligned_cols=84 Identities=19% Similarity=0.187 Sum_probs=65.3
Q ss_pred CCcEEEEEECCe-eeEeeeecCC-CCCeeeeEEEEEeccCCCceEEEEEEEcCCCC-CceeEEEEEcCCCCCCCCCCCCC
Q 004208 60 CDPYVEVKIGNY-KGTTIPFEKK-LNPEWNQVFAFTKERLQAISVELLVKDKMIVN-GDFIGKIKIDMPDIPKRVPPDSP 136 (768)
Q Consensus 60 ~dPyv~v~~~~~-~~~T~~~~~t-~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~~~-d~~lG~~~i~l~~l~~~~~~~~~ 136 (768)
+++|+.+.+... -.+|..+.+. .+|.|.+.|....... ...+.+.|-+.+... ...+|.++++...+..+.
T Consensus 138 ~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~-~g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~~----- 211 (887)
T KOG1329|consen 138 LENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAHK-AGYVIFRVKGARVPGWSKRWGRVKISFLQYCSGH----- 211 (887)
T ss_pred ccchheeeechhhhhchhhhhcccccchhhhhcccccccc-ccEEEEeecCCccccceeEEEEeccchhhhhccc-----
Confidence 488998888763 3466666565 7899999998887766 568889998888775 899999999999988762
Q ss_pred CCCeEEEcccCCC
Q 004208 137 LAPEWKRLEAKDG 149 (768)
Q Consensus 137 ~~~~w~~L~~~~~ 149 (768)
....|+++-+..+
T Consensus 212 ~~~~~~~Il~~d~ 224 (887)
T KOG1329|consen 212 RIGGWFPILDNDG 224 (887)
T ss_pred cccceeeeeccCC
Confidence 3578888776554
No 314
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=46.99 E-value=72 Score=26.55 Aligned_cols=40 Identities=10% Similarity=0.282 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCchhHHH
Q 004208 672 RYDRLRSIAARMVTLNGDLDSQLERLQSLIDWRDPRATAM 711 (768)
Q Consensus 672 ~~~~l~~~~~~vQ~~l~~~a~~~e~~~~l~~w~~p~~t~~ 711 (768)
+++.|.+.+..++..-+.+..-..+++.-.-|+.-+....
T Consensus 32 ~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~~~~~~k~~~i 71 (89)
T PF00957_consen 32 KLEELEDKTEELSDNAKQFKKNAKKLKRKMWWRNYKLYII 71 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555666666666666667777778887544433
No 315
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.31 E-value=70 Score=28.08 Aligned_cols=39 Identities=13% Similarity=0.287 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCchhHHH
Q 004208 673 YDRLRSIAARMVTLNGDLDSQLERLQSLIDWRDPRATAM 711 (768)
Q Consensus 673 ~~~l~~~~~~vQ~~l~~~a~~~e~~~~l~~w~~p~~t~~ 711 (768)
++.|++-+..+|..-..+-.-.-+++--+-|++-+...+
T Consensus 59 L~~L~drad~L~~~as~F~~~A~klkrk~wWkn~Km~~i 97 (116)
T KOG0860|consen 59 LDELDDRADQLQAGASQFEKTAVKLKRKMWWKNCKMRII 97 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555666777788998766544
No 316
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=46.26 E-value=69 Score=30.94 Aligned_cols=39 Identities=8% Similarity=0.035 Sum_probs=31.8
Q ss_pred eeEeeeecCCCCCeeeeEEEEEec--cCCCceEEEEEEEcC
Q 004208 72 KGTTIPFEKKLNPEWNQVFAFTKE--RLQAISVELLVKDKM 110 (768)
Q Consensus 72 ~~~T~~~~~t~nP~Wne~f~f~~~--~~~~~~L~i~V~d~~ 110 (768)
...|.+...+.+|.|+|++-+.+. ......|.|+.|+..
T Consensus 57 ~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvs 97 (185)
T cd08697 57 SAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVS 97 (185)
T ss_pred EEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeec
Confidence 467888889999999999988853 344678999999976
No 317
>PF14924 DUF4497: Protein of unknown function (DUF4497)
Probab=45.68 E-value=53 Score=28.83 Aligned_cols=62 Identities=23% Similarity=0.339 Sum_probs=42.0
Q ss_pred cEEEEEEEeCCC-CCCCCCCCCceEEEEEecccccc--------------CceeeeeEeeeecCCCCcccccEEEEEEEE
Q 004208 424 TVITLVVFDNCH-LHPGGAKDSRIGKVRIRLSTLET--------------DRIYTHSYPLVALLPNGVKKMGEVQLAVRF 488 (768)
Q Consensus 424 ~~l~v~v~d~~~-~~~~~~~d~~lG~~~i~l~~l~~--------------~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 488 (768)
..|.+.+++-.. +. .....+||.+.|++.+... .+.....|+|.+.. |. ..|.|.+.+++
T Consensus 29 ~pl~i~~~~~~~~~~--~~~~~liG~~~i~l~~~~~~i~~~~~~~~~~p~s~~~k~~f~L~~~~--~~-~~G~I~l~iRL 103 (112)
T PF14924_consen 29 FPLYIVVKKVPPGFP--TPPPMLIGSCPISLAEAFNRILKDSAECNGQPSSKTIKGTFPLFDEN--GN-PVGEISLYIRL 103 (112)
T ss_pred CceEEEEEecCCCCC--CCccceeeEEEecHHHHHHHHHHHHHhhccCCCchhhcceeEeecCC--Cc-eeeeEEEEEEE
Confidence 467776665432 00 1256789999999998652 12456789998653 33 66999999998
Q ss_pred Ee
Q 004208 489 TC 490 (768)
Q Consensus 489 ~~ 490 (768)
++
T Consensus 104 sc 105 (112)
T PF14924_consen 104 SC 105 (112)
T ss_pred ec
Confidence 74
No 318
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=45.11 E-value=59 Score=31.23 Aligned_cols=55 Identities=22% Similarity=0.304 Sum_probs=37.4
Q ss_pred EeeecccCCCCCCcccceEEEEecCCC--CCcEEEEEEeccCC-----CCCceeEEEEEeccc
Q 004208 234 LKTTVSAKKTVNPTWNEDLMFVAAEPF--DDPLILTVEDKLGD-----NKEECLGRLVLPLSK 289 (768)
Q Consensus 234 ~~T~~i~~~t~nP~wne~f~f~~~~~~--~~~L~i~V~d~d~~-----~~d~~lG~~~i~l~~ 289 (768)
.-|.++.. ..+|.|+|+|...+.... ...|.|++++.... .....+|.+.+||-+
T Consensus 54 ~~~sv~~~-~k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 54 EYTSVVYY-HKNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred eEEEEEEc-CCCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 33445555 589999999999885543 55789999886422 235567777777654
No 319
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=44.09 E-value=65 Score=38.13 Aligned_cols=30 Identities=13% Similarity=0.538 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHH-HHHHhHHhhhhhhhee
Q 004208 709 TAMFSIFCLMAAVV-FYIVPLWILLLFAGPF 738 (768)
Q Consensus 709 t~~~~~~l~~~~~v-~~~vP~r~i~l~~g~~ 738 (768)
|.+|+++.+..-+| ++|||.+|+++++..|
T Consensus 76 ~~~~~~~~~~~d~~~~~~~p~~~~~~~~~~~ 106 (697)
T PF09726_consen 76 SVFFVCIAFTSDLICLFFIPVHWLFFAASTY 106 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 33333333333334 4569999999987555
No 320
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=43.64 E-value=92 Score=30.12 Aligned_cols=60 Identities=7% Similarity=0.091 Sum_probs=41.4
Q ss_pred eeeeeccccCCCCCccccEEEEEEeC---CCcEEEEEEEeCCCCCC-----CCCCCCceEEEEEeccc
Q 004208 396 KWVRTRTVVDSFDPKWNEQYTWEVYD---PYTVITLVVFDNCHLHP-----GGAKDSRIGKVRIRLST 455 (768)
Q Consensus 396 ~~~~T~~~~~t~nP~wne~~~~~v~~---~~~~l~v~v~d~~~~~~-----~~~~d~~lG~~~i~l~~ 455 (768)
..+.|.+...+.+|.|+|++-+.+.- +...|.++.++-..-.. .......+|.+-+||-+
T Consensus 56 ~~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 56 TSAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred eEEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 45788888899999999998887763 34588999888653110 01123567887777765
No 321
>PF10409 PTEN_C2: C2 domain of PTEN tumour-suppressor protein; InterPro: IPR014020 Tensins constitute an eukaryotic family of lipid phosphatases that are defined by the presence of two adjacent domains: a lipid phosphatase domain and a C2-like domain. The tensin-type C2 domain has a structure similar to the classical C2 domain (see IPR000008 from INTERPRO) that mediates the Ca2+-dependent membrane recruitment of several signalling proteins. However the tensin-type C2 domain lacks two of the three conserved loops that bind Ca2+, and in this respect it is similar to the C2 domains of PKC-type [, ]. The tensin-type C2 domain can bind phopholipid membranes in a Ca2+ independent manner []. In the tumour suppressor protein PTEN, the best characterised member of the family, the lipid phosphatase domain was shown to specifically dephosphorylate the D3 position of the inositol ring of the lipid second messenger, phosphatydilinositol-3-4-5-triphosphate (PIP3). The lipid phosphatase domain contains the signature motif HCXXGXXR present in the active sites of protein tyrosine phosphatases (PTPs) and dual specificity phosphatases (DSPs). Furthermore, two invariant lysines are found only in the tensin-type phosphatase motif (HCKXGKXR) and are suspected to interact with the phosphate group at position D1 and D5 of the inositol ring [, ]. The C2 domain is found at the C terminus of the tumour suppressor protein PTEN (phosphatidyl-inositol triphosphate phosphatase). This domain may include a CBR3 loop, indicating a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc suggesting that the C2 domain productively positions the catalytic part of the protein on the membrane. The crystal structure of the PTEN tumour suppressor has been solved []. The lipid phosphatase domain has a structure similar to the dual specificity phosphatase (see IPR000387 from INTERPRO). However, PTEN has a larger active site pocket that could be important to accommodate PI(3,4,5)P3. Proteins known to contain a phosphatase and a C2 tensin-type domain are listed below: Tensin, a focal-adhesion molecule that binds to actin filaments. It may be involved in cell migration, cartilage development and in linking signal transduction pathways to the cytoskeleton. Phosphatase and tensin homologue deleted on chromosome 10 protein (PTEN). It antagonizes PI 3-kinase signalling by dephosphorylating the 3-position of the inositol ring of PI(3,4,5)P3 and thus inactivates downstream signalling. It plays major roles both during development and in the adult to control cell size, growth, and survival. Auxilin. It binds clathrin heavy chain and promotes its assembly into regular cages. Cyclin G-associated kinase or auxilin-2. It is a potential regulator of clathrin-mediated membrane trafficking. ; GO: 0005515 protein binding; PDB: 3N0A_A 1D5R_A 3V0D_B 3V0H_B 3V0G_A 3V0F_B 3V0J_A 3V0I_A 3AWE_B 3AWG_C ....
Probab=38.05 E-value=3e+02 Score=24.70 Aligned_cols=87 Identities=11% Similarity=0.126 Sum_probs=50.9
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeEE-eeecccCCCCCCcc-cceEEEEec--CCCCCcEEEEEEeccC-CCC
Q 004208 202 LRVNVIEAQDLVPKQRNRNPEVFIKAIFGNVVL-KTTVSAKKTVNPTW-NEDLMFVAA--EPFDDPLILTVEDKLG-DNK 276 (768)
Q Consensus 202 L~V~v~~a~~L~~~d~~~~~dpyV~v~lg~~~~-~T~~i~~~t~nP~w-ne~f~f~~~--~~~~~~L~i~V~d~d~-~~~ 276 (768)
|.+.=+.-.++|..+..+.+.||+++.-+++.. .+..... . .... ...+.+.+. -+....+.|.+++... ...
T Consensus 6 l~L~~I~l~~iP~f~~~~gc~p~i~I~~~~~~v~~~~~~~~-~-~~~~~~~~~~~~~~~~~~l~GDV~i~~~~~~~~~~~ 83 (134)
T PF10409_consen 6 LFLKSIILHGIPNFNSGGGCRPYIEIYNGGKKVFSTSKSYE-D-PKSYEQDSVIIELPKNLPLRGDVLIKFYHKRSSSMS 83 (134)
T ss_dssp EEEEEEEEES-TTSTTSSCCTEEEEEEETTEEEEETCCTCC-C-CCEEETTCEEEEEEEEEEEESEEEEEEEECETTECC
T ss_pred EEEEEEEEECCCccCCCCCEEEEEEEECCCccEEEecccee-c-cccccceeEEEEeCCCCeEeCCEEEEEEeCCCcccc
Confidence 555556667888776677899999999987766 3333221 1 1111 122333332 2235678899998763 345
Q ss_pred CceeEEEEEecccc
Q 004208 277 EECLGRLVLPLSKA 290 (768)
Q Consensus 277 d~~lG~~~i~l~~l 290 (768)
.+.+.++.+.-.=+
T Consensus 84 ~~~~f~~~FnT~Fi 97 (134)
T PF10409_consen 84 KEKMFRFWFNTGFI 97 (134)
T ss_dssp CEEEEEEEEEGGGS
T ss_pred cCeEEEEEEeeeee
Confidence 56777777664433
No 322
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=37.30 E-value=9.9 Score=42.68 Aligned_cols=82 Identities=12% Similarity=0.037 Sum_probs=56.9
Q ss_pred ccccccEEEEEEEEeecCCCC--CC--CCCCCcEEEEEECCeeeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEc
Q 004208 34 LVEQMEFLYVRIVRARDLQVN--QV--TGTCDPYVEVKIGNYKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDK 109 (768)
Q Consensus 34 ~~~~~~~L~V~i~~a~~L~~~--d~--~g~~dPyv~v~~~~~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~ 109 (768)
..+-.|....+++.|.+++.- +. .-..+|++...++.+.++|+....+.+|+|||. .+...+.++.
T Consensus 275 ~dd~~gi~ll~lI~a~~~~~i~~~~~~~f~~~~~~itsf~~~~frt~~~~~~e~piyNe~-~~E~~~Fqsn--------- 344 (975)
T KOG2419|consen 275 ADDFTGIALLTLIGAEMKYDIVEDVAKLFKDKWLAITSFGEQTFRTEISDDTEKPIYNED-EREDSDFQSN--------- 344 (975)
T ss_pred cchhhhhHHHHHhhhhcccchhhhhhhccCCCchheeecchhhhhhhhhccccccccccc-ccccccchhh---------
Confidence 333456666677777776421 11 224689999999999999999999999999998 6666554331
Q ss_pred CCC-CCceeEEEEEcCCC
Q 004208 110 MIV-NGDFIGKIKIDMPD 126 (768)
Q Consensus 110 ~~~-~d~~lG~~~i~l~~ 126 (768)
.. ....+|.+++++.+
T Consensus 345 -~~l~~kiv~~~~~~lnd 361 (975)
T KOG2419|consen 345 -RYLGNKIVGYCELDLND 361 (975)
T ss_pred -HHHhhhccccccccccc
Confidence 11 55667777777666
No 323
>PF14851 FAM176: FAM176 family
Probab=36.55 E-value=65 Score=29.99 Aligned_cols=26 Identities=15% Similarity=0.350 Sum_probs=14.3
Q ss_pred cccchhHHHHHHHHHHHHHcchhHHHHHHH
Q 004208 589 WKNPMTTTFVHVFYVIMVLFPQMILATFFF 618 (768)
Q Consensus 589 W~~p~~t~~~~~~~~~~v~~p~l~lp~~~l 618 (768)
|.+|-+.+ +|+++..+..|++.++++
T Consensus 16 ~~~PE~~a----LYFv~gVC~GLlLtLcll 41 (153)
T PF14851_consen 16 RDNPERFA----LYFVSGVCAGLLLTLCLL 41 (153)
T ss_pred HhChHHHH----HHHHHHHHHHHHHHHHHH
Confidence 56666553 344455555666655554
No 324
>PF10409 PTEN_C2: C2 domain of PTEN tumour-suppressor protein; InterPro: IPR014020 Tensins constitute an eukaryotic family of lipid phosphatases that are defined by the presence of two adjacent domains: a lipid phosphatase domain and a C2-like domain. The tensin-type C2 domain has a structure similar to the classical C2 domain (see IPR000008 from INTERPRO) that mediates the Ca2+-dependent membrane recruitment of several signalling proteins. However the tensin-type C2 domain lacks two of the three conserved loops that bind Ca2+, and in this respect it is similar to the C2 domains of PKC-type [, ]. The tensin-type C2 domain can bind phopholipid membranes in a Ca2+ independent manner []. In the tumour suppressor protein PTEN, the best characterised member of the family, the lipid phosphatase domain was shown to specifically dephosphorylate the D3 position of the inositol ring of the lipid second messenger, phosphatydilinositol-3-4-5-triphosphate (PIP3). The lipid phosphatase domain contains the signature motif HCXXGXXR present in the active sites of protein tyrosine phosphatases (PTPs) and dual specificity phosphatases (DSPs). Furthermore, two invariant lysines are found only in the tensin-type phosphatase motif (HCKXGKXR) and are suspected to interact with the phosphate group at position D1 and D5 of the inositol ring [, ]. The C2 domain is found at the C terminus of the tumour suppressor protein PTEN (phosphatidyl-inositol triphosphate phosphatase). This domain may include a CBR3 loop, indicating a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc suggesting that the C2 domain productively positions the catalytic part of the protein on the membrane. The crystal structure of the PTEN tumour suppressor has been solved []. The lipid phosphatase domain has a structure similar to the dual specificity phosphatase (see IPR000387 from INTERPRO). However, PTEN has a larger active site pocket that could be important to accommodate PI(3,4,5)P3. Proteins known to contain a phosphatase and a C2 tensin-type domain are listed below: Tensin, a focal-adhesion molecule that binds to actin filaments. It may be involved in cell migration, cartilage development and in linking signal transduction pathways to the cytoskeleton. Phosphatase and tensin homologue deleted on chromosome 10 protein (PTEN). It antagonizes PI 3-kinase signalling by dephosphorylating the 3-position of the inositol ring of PI(3,4,5)P3 and thus inactivates downstream signalling. It plays major roles both during development and in the adult to control cell size, growth, and survival. Auxilin. It binds clathrin heavy chain and promotes its assembly into regular cages. Cyclin G-associated kinase or auxilin-2. It is a potential regulator of clathrin-mediated membrane trafficking. ; GO: 0005515 protein binding; PDB: 3N0A_A 1D5R_A 3V0D_B 3V0H_B 3V0G_A 3V0F_B 3V0J_A 3V0I_A 3AWE_B 3AWG_C ....
Probab=36.47 E-value=3.2e+02 Score=24.53 Aligned_cols=89 Identities=13% Similarity=0.071 Sum_probs=49.7
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeee-EeeeecCCCCCeeeeEEEEEec--cCCCceEEEEEEEcCCC--CC
Q 004208 40 FLYVRIVRARDLQVNQVTGTCDPYVEVKIGNYKG-TTIPFEKKLNPEWNQVFAFTKE--RLQAISVELLVKDKMIV--NG 114 (768)
Q Consensus 40 ~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~~~~-~T~~~~~t~nP~Wne~f~f~~~--~~~~~~L~i~V~d~~~~--~d 114 (768)
.|.++=+.-.+++.-+.++.|.||++|.-++... .|........-.=...+.+.+. -.-..-+.|++|+.+.. .+
T Consensus 5 ~l~L~~I~l~~iP~f~~~~gc~p~i~I~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~GDV~i~~~~~~~~~~~~ 84 (134)
T PF10409_consen 5 PLFLKSIILHGIPNFNSGGGCRPYIEIYNGGKKVFSTSKSYEDPKSYEQDSVIIELPKNLPLRGDVLIKFYHKRSSSMSK 84 (134)
T ss_dssp EEEEEEEEEES-TTSTTSSCCTEEEEEEETTEEEEETCCTCCCCCEEETTCEEEEEEEEEEEESEEEEEEEECETTECCC
T ss_pred eEEEEEEEEECCCccCCCCCEEEEEEEECCCccEEEeccceeccccccceeEEEEeCCCCeEeCCEEEEEEeCCCccccc
Confidence 4666666667777766778899999999888654 3322211111111122233222 11145688888887742 56
Q ss_pred ceeEEEEEcCCCCC
Q 004208 115 DFIGKIKIDMPDIP 128 (768)
Q Consensus 115 ~~lG~~~i~l~~l~ 128 (768)
+.+.++.+...-+.
T Consensus 85 ~~~f~~~FnT~Fi~ 98 (134)
T PF10409_consen 85 EKMFRFWFNTGFIE 98 (134)
T ss_dssp EEEEEEEEEGGGSB
T ss_pred CeEEEEEEeeeeee
Confidence 66666666654443
No 325
>PF02453 Reticulon: Reticulon; InterPro: IPR003388 Eukaryotic proteins of the reticulon (RTN) family all share an association with the endoplasmic reticulum (ER). Whereas amino-terminal regions are not related to one another, all reticulon proteins share a 200 amino acid residue region of sequence similarity at the C-terminal. This region contains two large hydrophobic regions separated by a 66 residue hydrophilic segment. The conserved hydrophobic C-terminal portion has been shown to play an essential role in the association of reticulons with the ER membrane. The hydrophobic portions are supposed to be membrane-embedded and the hydrophilic 66 residue localized to the lumenal/extracellular face of the membrane. Most reticulons have a di-lysine ER retention motif at the C-terminal. Because of their likely association with the rough as well as the smooth ER, the reticulons might play some role in transport processes or in regulation of intracellular calcium levels. It has been suggested that the reticulons may be serving as ER-associated channel-like complexes [, , , ].; GO: 0005783 endoplasmic reticulum; PDB: 2KO2_A 2JV5_A 2G31_A.
Probab=35.95 E-value=12 Score=35.45 Aligned_cols=22 Identities=27% Similarity=0.593 Sum_probs=0.0
Q ss_pred HhhhccccCchhHHHHHHHHHH
Q 004208 697 LQSLIDWRDPRATAMFSIFCLM 718 (768)
Q Consensus 697 ~~~l~~w~~p~~t~~~~~~l~~ 718 (768)
+++++.|+||..|..++.+..+
T Consensus 1 V~dll~W~~~~~S~~v~~~~~~ 22 (169)
T PF02453_consen 1 VADLLLWRDPKKSGIVFGAILL 22 (169)
T ss_dssp ----------------------
T ss_pred CceeeEecCCCchHHHHHHHHH
Confidence 3678999999999887766665
No 326
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=32.69 E-value=1.8e+02 Score=34.77 Aligned_cols=101 Identities=18% Similarity=0.274 Sum_probs=64.0
Q ss_pred EEEEEEEEecCCCCCCCCCCCCCcCcEEEEEe----cCee----eeeccccCCCCCccccEEEEEEe--C-C-CcEEEEE
Q 004208 362 VLELGILSAKELLPMKSRDGRGTTDAYCVAKY----ANKW----VRTRTVVDSFDPKWNEQYTWEVY--D-P-YTVITLV 429 (768)
Q Consensus 362 ~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~----g~~~----~~T~~~~~t~nP~wne~~~~~v~--~-~-~~~l~v~ 429 (768)
.++|.++++.++.. ...-|-+|.|.. |++. ..|.-+..+.+|.||+.++|.+. | | .+.|-+.
T Consensus 344 ~frI~l~~is~~n~------~~t~~~kV~V~~~lyhG~e~Lc~~~sTs~v~~~~~~~Wn~~leFDI~i~DLPr~ArLc~~ 417 (1076)
T KOG0904|consen 344 PFRIKLVGISKVNL------PETVDLKVFVEAGLYHGTEVLCKTRSTSEVPGCSFPLWNEWLEFDIYIKDLPRMARLCLA 417 (1076)
T ss_pred ceEEEEeeccccCC------CcccceEEEEEEEEEECCeehhcccccCCCCCccchhccceeEeeeecCCCChhhhheee
Confidence 48888888887643 123455665544 6654 45555666789999999888876 4 3 4577777
Q ss_pred EEeCCCC------------CCCCCCCCceEEEEEeccc----cccCceeeeeEee
Q 004208 430 VFDNCHL------------HPGGAKDSRIGKVRIRLST----LETDRIYTHSYPL 468 (768)
Q Consensus 430 v~d~~~~------------~~~~~~d~~lG~~~i~l~~----l~~~~~~~~~~~L 468 (768)
||..... ....+.+..+|.+.+.|-+ |..|+..-+-|+.
T Consensus 418 i~~v~~~~~s~~~s~~~~~kk~k~~~~plaWvN~~lfD~kd~LrtG~~~Lh~W~~ 472 (1076)
T KOG0904|consen 418 IYAVKAKAKSKKNSAESTKKKSKKEHCPLAWVNLMLFDHKDQLRTGEYVLHMWPS 472 (1076)
T ss_pred eeEeechhccccccchhhhhccccccCceEEEeeeeeechhhhhcCceEEEecCC
Confidence 7765210 0012466789999988876 4456654454553
No 327
>PF14963 CAML: Calcium signal-modulating cyclophilin ligand
Probab=30.15 E-value=4.7e+02 Score=26.35 Aligned_cols=34 Identities=6% Similarity=0.057 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHcchhHHHHHHHHHHHHHhhhccc
Q 004208 597 FVHVFYVIMVLFPQMILATFFFILFGVVIMKFKR 630 (768)
Q Consensus 597 ~~~~~~~~~v~~p~l~lp~~~l~l~~~~~~~~~~ 630 (768)
+++++=+++|-|-.++.|++-+-++++++..|+.
T Consensus 170 lAv~VR~fvCkyLsi~~pfl~l~l~~~gl~~~~~ 203 (263)
T PF14963_consen 170 LAVFVRLFVCKYLSIFAPFLTLQLAYMGLSKYFP 203 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhcc
Confidence 3444445556555556677776667777777764
No 328
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=29.75 E-value=21 Score=40.95 Aligned_cols=95 Identities=13% Similarity=0.058 Sum_probs=53.3
Q ss_pred CCCcEEEEEECCeEE-eeecccCCCCCCcccceEEEEecCCCCCcEEEEEEeccCCCCCceeEEEEEeccccccccCCCC
Q 004208 220 NPEVFIKAIFGNVVL-KTTVSAKKTVNPTWNEDLMFVAAEPFDDPLILTVEDKLGDNKEECLGRLVLPLSKAGKRFLPLP 298 (768)
Q Consensus 220 ~~dpyV~v~lg~~~~-~T~~i~~~t~nP~wne~f~f~~~~~~~~~L~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~ 298 (768)
..+||+.+.+.-... .+.+.+. +..|.|+++|...+.. ...+.|.|+.......+.+...+++-.+++.. ...
T Consensus 27 al~~y~~v~vk~~~~~~~~~~~~-~~~~~~~~~F~~~v~~--~~~~~i~v~~~~~~~~~~~~a~~~~~~e~~k~---~~~ 100 (694)
T KOG0694|consen 27 ALQPYLAVELKVKQGAENMTKVE-LRIPELRETFHVEVVA--GGAKNIIVLLKSPDPKALSEAQLSLQEESQKL---LAL 100 (694)
T ss_pred hhhhhheeccceeecccccCCCC-CCCchhhhheeeeeec--CCceEEEEEecCCcchhhHHHhHHHHHHHHHH---Hhh
Confidence 458888887743322 3333444 9999999999998765 45678888875433333333333222222221 112
Q ss_pred CCceeEEcccCccCccccccccccceEEEEEecCC
Q 004208 299 AAAIWYNLERNIANGEEKKDVRFASRICLRFSLDG 333 (768)
Q Consensus 299 ~~~~w~~L~~~~~~g~~~~~~~~~g~i~l~v~~~~ 333 (768)
....|..+... |++...+.+.+
T Consensus 101 ~~~~w~~~~~~-------------g~~~~~~~~~~ 122 (694)
T KOG0694|consen 101 EQRLWVLIEEL-------------GTLLKPAALTG 122 (694)
T ss_pred hhhhccccccc-------------cceeeeecccC
Confidence 23456664442 66776666654
No 329
>PF04281 Tom22: Mitochondrial import receptor subunit Tom22 ; InterPro: IPR005683 The mitochondrial protein translocase family, which is responsible for movement of nuclear encoded pre-proteins into mitochondria, is very complex with at least 19 components. These proteins include several chaperone proteins, four proteins of the outer membrane translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family represents the Tom22 proteins []. The N-terminal region of Tom22 has been shown to have chaperone-like activity, and the C-terminal region faces the intermembrane face []. ; GO: 0006886 intracellular protein transport, 0005741 mitochondrial outer membrane
Probab=28.26 E-value=3.8e+02 Score=24.55 Aligned_cols=40 Identities=15% Similarity=0.159 Sum_probs=24.5
Q ss_pred cchhhHHHHHHHHHHHH-HHHHHHHHHH-HHHHHHhhhcccc
Q 004208 665 QGHILTTRYDRLRSIAA-RMVTLNGDLD-SQLERLQSLIDWR 704 (768)
Q Consensus 665 ~~~~~~~~~~~l~~~~~-~vQ~~l~~~a-~~~e~~~~l~~w~ 704 (768)
..+.+.+|+-+|+++.- .+.+.+..++ .....+++++++.
T Consensus 49 ~dETl~ERl~aLkdi~P~~~R~~i~~~~~~~~~~~k~~~~~~ 90 (137)
T PF04281_consen 49 EDETLLERLWALKDIFPPSVRNWISSTVSTTSSAVKSLFSFS 90 (137)
T ss_pred ccccHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44678999999999887 4444443333 3334455555544
No 330
>PF14909 SPATA6: Spermatogenesis-assoc protein 6
Probab=27.45 E-value=4.9e+02 Score=23.90 Aligned_cols=85 Identities=9% Similarity=0.076 Sum_probs=58.3
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEeeecccCCCCCCcccceEEEEec-----C-------CCCCcEEEEEE
Q 004208 202 LRVNVIEAQDLVPKQRNRNPEVFIKAIFGNVVLKTTVSAKKTVNPTWNEDLMFVAA-----E-------PFDDPLILTVE 269 (768)
Q Consensus 202 L~V~v~~a~~L~~~d~~~~~dpyV~v~lg~~~~~T~~i~~~t~nP~wne~f~f~~~-----~-------~~~~~L~i~V~ 269 (768)
|.|+-+.|-|.-.. .+.|.|+.+++-|+..+|+-... .-=-.++|.|.|.-. + ...+.+.++++
T Consensus 4 L~i~aVTCPGv~L~---~~~~vyL~v~~lg~~~~T~~~pp-vFPllfhek~~FeK~F~~~~dp~~l~~~Le~e~~~iELi 79 (140)
T PF14909_consen 4 LEIHAVTCPGVWLC---DKGDVYLSVCILGQYKRTRCLPP-VFPLLFHEKFRFEKVFPNAVDPAQLADLLEDETVYIELI 79 (140)
T ss_pred EEEEEEecCCeEeC---CCCCEEEEEEEcccEeecccCCC-cCCeeEeeEEEeEEEecCCCCHHHHHHHhhcCcEEEEEE
Confidence 55555666554432 34599999999999999986653 322246888888521 1 13568999998
Q ss_pred eccCCCCCceeEEEEEeccccc
Q 004208 270 DKLGDNKEECLGRLVLPLSKAG 291 (768)
Q Consensus 270 d~d~~~~d~~lG~~~i~l~~l~ 291 (768)
...... ++.++..+-++.++.
T Consensus 80 Ql~~~~-g~iLA~ye~n~rDfL 100 (140)
T PF14909_consen 80 QLVPPA-GEILAYYEENTRDFL 100 (140)
T ss_pred EEeCCC-CcEEEEEeccccceE
Confidence 876543 678888888888865
No 331
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=26.98 E-value=28 Score=40.94 Aligned_cols=66 Identities=21% Similarity=0.237 Sum_probs=50.5
Q ss_pred ccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcC
Q 004208 38 MEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGN-----YKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKM 110 (768)
Q Consensus 38 ~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~ 110 (768)
+|.+.+.+.+|..|... .+-||...+.. -+.+|.++.+|..|.||++|...+... +...+..++++
T Consensus 758 ygflh~~vhsat~lkqs-----~~lY~Td~v~e~~~~~s~~st~~iadT~~~~~npe~hv~~~~s--qS~r~~~~ek~ 828 (1112)
T KOG4269|consen 758 YGFLHVIVHSATGLKQS-----RNLYCTDEVDEFGYFVSKASTRVIADTAEPQWNPEKHVPVIES--QSSRLEKTEKS 828 (1112)
T ss_pred ccceeeeeccccccccc-----cceeeehhhhhhccccccccceeeecccCCCCChhcccchhhc--cccchhhhccc
Confidence 67899999999998643 36688877653 467899999999999999999887664 34446666554
No 332
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=24.61 E-value=1.2e+02 Score=36.10 Aligned_cols=68 Identities=19% Similarity=0.204 Sum_probs=45.1
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEEC----Ce----eeEeeeecCCCCCeeeeEEEEEec--cCC-CceEEEEEE
Q 004208 39 EFLYVRIVRARDLQVNQVTGTCDPYVEVKIG----NY----KGTTIPFEKKLNPEWNQVFAFTKE--RLQ-AISVELLVK 107 (768)
Q Consensus 39 ~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~----~~----~~~T~~~~~t~nP~Wne~f~f~~~--~~~-~~~L~i~V~ 107 (768)
..++|+++++.++.. ....|-+|.|..+ ++ ...|.-+.++.+|.||+...|++. ++. ...|-|.||
T Consensus 343 ~~frI~l~~is~~n~---~~t~~~kV~V~~~lyhG~e~Lc~~~sTs~v~~~~~~~Wn~~leFDI~i~DLPr~ArLc~~i~ 419 (1076)
T KOG0904|consen 343 RPFRIKLVGISKVNL---PETVDLKVFVEAGLYHGTEVLCKTRSTSEVPGCSFPLWNEWLEFDIYIKDLPRMARLCLAIY 419 (1076)
T ss_pred CceEEEEeeccccCC---CcccceEEEEEEEEEECCeehhcccccCCCCCccchhccceeEeeeecCCCChhhhheeeee
Confidence 368889999887642 2234667776654 32 234555666899999999999863 443 456777776
Q ss_pred Ec
Q 004208 108 DK 109 (768)
Q Consensus 108 d~ 109 (768)
..
T Consensus 420 ~v 421 (1076)
T KOG0904|consen 420 AV 421 (1076)
T ss_pred Ee
Confidence 54
No 333
>PF08060 NOSIC: NOSIC (NUC001) domain; InterPro: IPR012976 This is the central domain in Nop56/SIK1-like proteins [].; PDB: 3PLA_K 3ICX_B 3ID6_A 3ID5_E 3NVM_A 3NMU_B 2NNW_C 3NVI_A 3NVK_A 2OZB_E ....
Probab=23.61 E-value=1.7e+02 Score=21.80 Aligned_cols=32 Identities=13% Similarity=0.337 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccCchhHHHH
Q 004208 681 ARMVTLNGDLDSQLERLQSLIDWRDPRATAMF 712 (768)
Q Consensus 681 ~~vQ~~l~~~a~~~e~~~~l~~w~~p~~t~~~ 712 (768)
.-+...=.+++.+.++++...+|+-|.+..++
T Consensus 7 ~l~~~id~ei~~~~~~lre~Y~~~FPEL~~lv 38 (53)
T PF08060_consen 7 ELLDDIDKEINLLHMRLREWYSWHFPELESLV 38 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTSTTHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccchhHHHHc
Confidence 34555667889999999999999999998763
No 334
>PHA03164 hypothetical protein; Provisional
Probab=22.50 E-value=83 Score=24.99 Aligned_cols=32 Identities=25% Similarity=0.624 Sum_probs=15.6
Q ss_pred cccchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHhhh
Q 004208 589 WKNPMTTTFVHVFYVIMVLFPQMILATFFFILFGVVIMK 627 (768)
Q Consensus 589 W~~p~~t~~~~~~~~~~v~~p~l~lp~~~l~l~~~~~~~ 627 (768)
|++..+| .+|++.. .|+++++++.++++-+.|
T Consensus 51 wnnrRkt-ftFlvLt------gLaIamILfiifvlyvFn 82 (88)
T PHA03164 51 WNNRRKT-FTFLVLT------GLAIAMILFIIFVLYVFN 82 (88)
T ss_pred HHhhhhe-eehHHHH------HHHHHHHHHHHHHHHhee
Confidence 7777777 2222222 345666655444433333
No 335
>KOG4111 consensus Translocase of outer mitochondrial membrane complex, subunit TOM22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.36 E-value=2.5e+02 Score=25.36 Aligned_cols=50 Identities=12% Similarity=0.118 Sum_probs=27.8
Q ss_pred cchhhHHHHHHHHHHHH-HHHHHHHHHHH-HHHHHhhhccccCchhHHHHHHH
Q 004208 665 QGHILTTRYDRLRSIAA-RMVTLNGDLDS-QLERLQSLIDWRDPRATAMFSIF 715 (768)
Q Consensus 665 ~~~~~~~~~~~l~~~~~-~vQ~~l~~~a~-~~e~~~~l~~w~~p~~t~~~~~~ 715 (768)
+.+.+.+|+-.++++.. ...+.++..++ .+.-+++++.++- .+.+.+...
T Consensus 40 ~dETi~eRi~gLkEivp~g~R~~i~~~~~~av~~~kk~~~fsg-~a~Wi~tTt 91 (136)
T KOG4111|consen 40 EDETILERIWGLKEIVPQGRRSAIGATAGDAVFVVKKLYSFSG-KAAWIATTT 91 (136)
T ss_pred cchhHHHHHHhhHhhcchhhhhhhhhcchhHHHHHHHHHHhcc-chhHHHHHH
Confidence 45678999999988887 33333333332 3334555555543 344443333
No 336
>PHA01159 hypothetical protein
Probab=21.22 E-value=4.3e+02 Score=23.20 Aligned_cols=33 Identities=18% Similarity=0.198 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccccC
Q 004208 673 YDRLRSIAARMVTLNGDLDSQLERLQSLIDWRD 705 (768)
Q Consensus 673 ~~~l~~~~~~vQ~~l~~~a~~~e~~~~l~~w~~ 705 (768)
|..++.++..-|..++.+++..+.+++.|-|-.
T Consensus 5 ~~~L~~I~~~~qt~~dFf~~~~d~i~~~fv~~~ 37 (114)
T PHA01159 5 YSALEFIANIGQTFLDFFDVAIDWIKNAFVYGA 37 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 567788888999999999999999888776644
No 337
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=20.76 E-value=4e+02 Score=27.36 Aligned_cols=68 Identities=19% Similarity=0.194 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCchhHHHHHHHHHHHHHHHHHHhHHhhhhhhheecccCC
Q 004208 670 TTRYDRLRSIAARMVTLNGDLDSQLERLQSLIDWRDPRATAMFSIFCLMAAVVFYIVPLWILLLFAGPFVMRHP 743 (768)
Q Consensus 670 ~~~~~~l~~~~~~vQ~~l~~~a~~~e~~~~l~~w~~p~~t~~~~~~l~~~~~v~~~vP~r~i~l~~g~~~~r~P 743 (768)
.+-++.+.++..+++...+.+.+..+-..+..+-+ ....+-.+.++++ .|+|+-+|.-++|.|+-.-|
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~n~~m~~LT~~t~--iflPlt~i~g~fGMN~~~~p 262 (292)
T PF01544_consen 195 RDLLDRIERLLERAESLRERLESLQDLYQSKLSNR----QNRVMKVLTIVTA--IFLPLTFITGIFGMNFKGMP 262 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH----HHHHHHHHHHHHH--HHHHHHHHTTSTTS-SS---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH--HHHHHHHHHHHhhCCccCCC
Confidence 33344444444444444444444444444544444 2334444444444 34899999989998865444
No 338
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=20.19 E-value=60 Score=38.44 Aligned_cols=87 Identities=20% Similarity=0.327 Sum_probs=58.0
Q ss_pred eeeEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEe---c--CeeeeeccccCCCCCccccEEEEEEeCCCcEEEEEEEeC
Q 004208 359 VIGVLELGILSAKELLPMKSRDGRGTTDAYCVAKY---A--NKWVRTRTVVDSFDPKWNEQYTWEVYDPYTVITLVVFDN 433 (768)
Q Consensus 359 ~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~---g--~~~~~T~~~~~t~nP~wne~~~~~v~~~~~~l~v~v~d~ 433 (768)
..|.+.+.+++|.+|.. ....||...+ | ....+|+++.+|..|.||+.++.++-.. +...+..++.
T Consensus 757 ~ygflh~~vhsat~lkq--------s~~lY~Td~v~e~~~~~s~~st~~iadT~~~~~npe~hv~~~~s-qS~r~~~~ek 827 (1112)
T KOG4269|consen 757 LYGFLHVIVHSATGLKQ--------SRNLYCTDEVDEFGYFVSKASTRVIADTAEPQWNPEKHVPVIES-QSSRLEKTEK 827 (1112)
T ss_pred cccceeeeecccccccc--------ccceeeehhhhhhccccccccceeeecccCCCCChhcccchhhc-cccchhhhcc
Confidence 45789999999999975 3457887655 3 3568999999999999999988887642 3344555554
Q ss_pred CCCC------CCCCCCCceEEEEEecc
Q 004208 434 CHLH------PGGAKDSRIGKVRIRLS 454 (768)
Q Consensus 434 ~~~~------~~~~~d~~lG~~~i~l~ 454 (768)
+.-. .+-..+...|+.++.+.
T Consensus 828 ~~~~~k~~~~~~~~~~~~~~~~~~~l~ 854 (1112)
T KOG4269|consen 828 STPVEKLIDSHSQNSQNEEKRSRMKLD 854 (1112)
T ss_pred cchHHHhhhccchhhcccccccccccC
Confidence 4210 00124556666655544
Done!