Query 004209
Match_columns 768
No_of_seqs 476 out of 3774
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 17:44:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004209.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004209hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3j2k_7 ERF3, eukaryotic polype 100.0 1.3E-74 4.3E-79 652.9 48.6 423 337-765 14-439 (439)
2 1f60_A Elongation factor EEF1A 100.0 2.3E-70 7.8E-75 621.3 43.3 424 338-766 5-442 (458)
3 3p26_A Elongation factor 1 alp 100.0 4.9E-70 1.7E-74 622.5 40.4 425 338-765 31-477 (483)
4 1jny_A EF-1-alpha, elongation 100.0 2.2E-69 7.6E-74 609.4 44.7 424 338-766 4-430 (435)
5 3izq_1 HBS1P, elongation facto 100.0 1.5E-69 5.2E-74 633.3 37.9 425 337-764 164-610 (611)
6 1r5b_A Eukaryotic peptide chai 100.0 2.1E-70 7.1E-75 623.0 29.6 422 338-765 41-467 (467)
7 3mca_A HBS1, elongation factor 100.0 8.5E-69 2.9E-73 625.2 32.2 417 336-764 173-592 (592)
8 1zun_B Sulfate adenylate trans 100.0 3.7E-64 1.3E-68 566.7 44.0 408 338-762 22-434 (434)
9 1d2e_A Elongation factor TU (E 100.0 3.1E-58 1E-62 512.8 39.3 377 339-767 2-389 (397)
10 2c78_A Elongation factor TU-A; 100.0 1.3E-56 4.3E-61 500.9 38.9 383 338-765 9-405 (405)
11 3avx_A Elongation factor TS, e 100.0 2.1E-53 7E-58 513.4 38.4 379 336-767 292-680 (1289)
12 1wb1_A Translation elongation 100.0 2.1E-54 7.3E-59 493.1 25.4 366 336-764 15-394 (482)
13 2elf_A Protein translation elo 100.0 1.6E-51 5.4E-56 454.6 30.5 333 342-761 23-370 (370)
14 1kk1_A EIF2gamma; initiation o 100.0 1.6E-50 5.6E-55 452.2 38.8 342 337-761 7-409 (410)
15 1s0u_A EIF-2-gamma, translatio 100.0 1.4E-50 4.8E-55 452.5 35.6 341 338-761 6-407 (408)
16 3sjy_A Translation initiation 100.0 4.5E-47 1.5E-51 423.5 35.1 354 337-761 5-402 (403)
17 3e1y_E Eukaryotic peptide chai 100.0 1E-38 3.4E-43 324.6 21.4 200 565-766 3-202 (204)
18 2ywe_A GTP-binding protein LEP 100.0 7.2E-33 2.5E-37 321.7 23.4 267 339-655 5-282 (600)
19 3vqt_A RF-3, peptide chain rel 100.0 6.5E-33 2.2E-37 320.3 22.2 276 339-655 30-402 (548)
20 3cb4_D GTP-binding protein LEP 100.0 5.4E-32 1.8E-36 314.8 25.9 267 339-655 3-280 (599)
21 3tr5_A RF-3, peptide chain rel 100.0 5.6E-30 1.9E-34 294.5 22.7 277 339-653 12-382 (528)
22 3j25_A Tetracycline resistance 100.0 2.7E-32 9.1E-37 320.8 2.6 272 340-655 2-332 (638)
23 4fn5_A EF-G 1, elongation fact 100.0 3.9E-30 1.3E-34 305.9 19.0 272 339-655 12-406 (709)
24 3izy_P Translation initiation 100.0 8.9E-32 3E-36 308.9 4.1 253 339-655 3-261 (537)
25 2h5e_A Peptide chain release f 100.0 1.5E-29 5.3E-34 291.0 21.5 286 339-653 12-383 (529)
26 1zo1_I IF2, translation initia 100.0 8E-31 2.8E-35 298.7 8.3 247 339-652 3-257 (501)
27 2rdo_7 EF-G, elongation factor 100.0 1.6E-28 5.4E-33 291.5 27.1 271 339-654 9-402 (704)
28 1dar_A EF-G, elongation factor 100.0 1E-28 3.6E-33 292.6 25.1 273 338-655 10-395 (691)
29 2dy1_A Elongation factor G; tr 100.0 1E-27 3.5E-32 283.1 21.2 269 339-655 8-368 (665)
30 2xex_A Elongation factor G; GT 100.0 2E-27 7E-32 281.7 22.7 271 339-654 9-394 (693)
31 1g7s_A Translation initiation 100.0 1.8E-28 6.2E-33 285.3 12.6 256 339-654 4-329 (594)
32 1n0u_A EF-2, elongation factor 99.9 3.4E-25 1.2E-29 267.7 20.1 289 339-654 18-474 (842)
33 2lkc_A Translation initiation 99.8 1.6E-19 5.4E-24 175.2 5.1 155 338-535 6-160 (178)
34 4dhe_A Probable GTP-binding pr 99.8 3E-18 1E-22 173.1 13.0 156 339-535 28-200 (223)
35 2hjg_A GTP-binding protein ENG 99.7 4.1E-18 1.4E-22 191.7 13.3 155 339-536 174-339 (436)
36 3iev_A GTP-binding protein ERA 99.7 9.3E-18 3.2E-22 180.4 15.4 152 338-535 8-171 (308)
37 1wf3_A GTP-binding protein; GT 99.7 1.5E-17 5.1E-22 178.4 14.6 147 339-535 6-162 (301)
38 2y8e_A RAB-protein 6, GH09086P 99.7 3E-17 1E-21 158.6 15.0 150 338-535 12-166 (179)
39 2dyk_A GTP-binding protein; GT 99.7 3.4E-17 1.2E-21 155.7 14.9 143 341-535 2-151 (161)
40 4dcu_A GTP-binding protein ENG 99.7 1.3E-17 4.6E-22 188.5 13.6 154 339-535 194-358 (456)
41 2ew1_A RAS-related protein RAB 99.7 6E-17 2E-21 162.8 16.6 164 324-535 10-178 (201)
42 3i8s_A Ferrous iron transport 99.7 1.1E-17 3.9E-22 176.8 11.8 145 339-535 2-158 (274)
43 2hxs_A RAB-26, RAS-related pro 99.7 4E-17 1.4E-21 158.2 14.4 151 338-535 4-162 (178)
44 1kao_A RAP2A; GTP-binding prot 99.7 3.6E-17 1.2E-21 155.7 13.4 152 339-535 2-155 (167)
45 1zd9_A ADP-ribosylation factor 99.7 1.9E-17 6.5E-22 163.4 11.7 151 338-535 20-174 (188)
46 3pqc_A Probable GTP-binding pr 99.7 9.4E-17 3.2E-21 157.6 16.5 150 338-535 21-183 (195)
47 1upt_A ARL1, ADP-ribosylation 99.7 2.2E-17 7.7E-22 158.6 11.7 150 339-535 6-158 (171)
48 1u8z_A RAS-related protein RAL 99.7 6.8E-17 2.3E-21 154.0 14.7 155 338-535 2-156 (168)
49 3tkl_A RAS-related protein RAB 99.7 5.5E-17 1.9E-21 159.9 14.4 150 338-535 14-168 (196)
50 3iby_A Ferrous iron transport 99.7 2E-17 6.7E-22 173.4 11.6 151 341-558 2-164 (256)
51 1r2q_A RAS-related protein RAB 99.7 6.9E-17 2.4E-21 154.5 14.4 151 339-535 5-158 (170)
52 2oil_A CATX-8, RAS-related pro 99.7 5.1E-17 1.7E-21 160.4 13.8 162 328-535 13-177 (193)
53 2bme_A RAB4A, RAS-related prot 99.7 1.1E-16 3.6E-21 156.5 15.8 150 338-535 8-162 (186)
54 1c1y_A RAS-related protein RAP 99.7 4.5E-17 1.5E-21 155.6 12.7 154 339-535 2-156 (167)
55 2hup_A RAS-related protein RAB 99.7 1E-16 3.5E-21 160.4 15.8 158 331-535 20-182 (201)
56 2efe_B Small GTP-binding prote 99.7 7.1E-17 2.4E-21 156.8 14.3 150 338-535 10-164 (181)
57 3clv_A RAB5 protein, putative; 99.7 9.8E-17 3.3E-21 157.7 15.3 100 418-535 93-193 (208)
58 2o52_A RAS-related protein RAB 99.7 4.1E-17 1.4E-21 163.0 12.6 163 325-535 10-177 (200)
59 3tw8_B RAS-related protein RAB 99.7 4.2E-17 1.4E-21 157.9 12.2 149 339-535 8-160 (181)
60 2fg5_A RAB-22B, RAS-related pr 99.7 9E-17 3.1E-21 159.1 14.7 152 338-535 21-175 (192)
61 2il1_A RAB12; G-protein, GDP, 99.7 8.6E-17 3E-21 159.4 14.5 152 337-535 23-179 (192)
62 4bas_A ADP-ribosylation factor 99.7 6.1E-17 2.1E-21 159.9 13.4 155 336-535 13-178 (199)
63 2g6b_A RAS-related protein RAB 99.7 1.1E-16 3.9E-21 155.2 15.0 151 338-535 8-163 (180)
64 1ek0_A Protein (GTP-binding pr 99.7 1.5E-16 5.1E-21 152.2 15.3 154 339-535 2-158 (170)
65 2a9k_A RAS-related protein RAL 99.7 1.1E-16 3.8E-21 155.7 14.4 154 337-535 15-170 (187)
66 3bc1_A RAS-related protein RAB 99.7 2.4E-16 8.1E-21 154.2 16.6 150 338-535 9-174 (195)
67 1r8s_A ADP-ribosylation factor 99.7 6.9E-17 2.4E-21 154.3 12.4 147 341-535 1-151 (164)
68 1wms_A RAB-9, RAB9, RAS-relate 99.7 7.1E-17 2.4E-21 156.2 12.4 152 339-535 6-163 (177)
69 2a5j_A RAS-related protein RAB 99.7 8.6E-17 2.9E-21 158.9 13.1 156 332-535 13-173 (191)
70 1ky3_A GTP-binding protein YPT 99.7 2.6E-17 8.9E-22 159.5 9.2 152 338-535 6-167 (182)
71 1svi_A GTP-binding protein YSX 99.7 1.9E-16 6.3E-21 156.2 15.4 150 339-535 22-184 (195)
72 2wji_A Ferrous iron transport 99.7 7.5E-17 2.6E-21 156.0 12.3 145 339-535 2-154 (165)
73 2bov_A RAla, RAS-related prote 99.7 1.6E-16 5.3E-21 157.9 14.9 154 337-535 11-166 (206)
74 1z06_A RAS-related protein RAB 99.7 8.5E-17 2.9E-21 158.5 12.6 156 336-535 16-177 (189)
75 1zj6_A ADP-ribosylation factor 99.7 3.6E-17 1.2E-21 160.9 9.7 149 339-535 15-167 (187)
76 2h57_A ADP-ribosylation factor 99.7 7.3E-17 2.5E-21 159.1 11.9 153 337-535 18-176 (190)
77 3k53_A Ferrous iron transport 99.7 6.4E-17 2.2E-21 170.2 11.8 145 339-535 2-155 (271)
78 2fu5_C RAS-related protein RAB 99.7 5.9E-17 2E-21 158.1 10.8 149 339-535 7-160 (183)
79 1z0f_A RAB14, member RAS oncog 99.7 2.5E-16 8.6E-21 152.1 15.0 151 339-535 14-167 (179)
80 1ksh_A ARF-like protein 2; sma 99.7 5.5E-17 1.9E-21 159.0 10.3 150 338-535 16-169 (186)
81 1z0j_A RAB-22, RAS-related pro 99.7 2.2E-16 7.5E-21 151.3 14.1 151 339-535 5-158 (170)
82 2fn4_A P23, RAS-related protei 99.7 1.8E-16 6.3E-21 153.4 13.7 153 338-535 7-161 (181)
83 1z2a_A RAS-related protein RAB 99.7 1.8E-16 6E-21 151.6 13.4 149 339-535 4-156 (168)
84 1z08_A RAS-related protein RAB 99.7 1.9E-16 6.5E-21 151.9 13.6 149 339-535 5-158 (170)
85 1fzq_A ADP-ribosylation factor 99.7 1.4E-16 4.8E-21 156.6 12.9 149 339-535 15-167 (181)
86 2h17_A ADP-ribosylation factor 99.7 3E-17 1E-21 160.8 8.0 152 336-535 17-172 (181)
87 3a1s_A Iron(II) transport prot 99.7 9.3E-17 3.2E-21 168.4 12.0 145 339-535 4-156 (258)
88 2nzj_A GTP-binding protein REM 99.7 2E-16 6.8E-21 152.5 13.1 150 339-535 3-158 (175)
89 4dsu_A GTPase KRAS, isoform 2B 99.7 1.1E-16 3.9E-21 156.2 11.5 151 339-535 3-155 (189)
90 3kkq_A RAS-related protein M-R 99.7 2.8E-16 9.6E-21 153.3 14.2 154 337-535 15-171 (183)
91 2gf9_A RAS-related protein RAB 99.7 2E-16 6.8E-21 155.8 13.2 151 339-535 21-174 (189)
92 2erx_A GTP-binding protein DI- 99.7 6.3E-16 2.2E-20 148.1 16.3 149 340-535 3-156 (172)
93 3q72_A GTP-binding protein RAD 99.7 1.1E-16 3.8E-21 153.2 10.9 148 340-535 2-153 (166)
94 1m2o_B GTP-binding protein SAR 99.7 7.5E-17 2.6E-21 160.0 10.0 150 338-535 21-181 (190)
95 2fh5_B SR-beta, signal recogni 99.7 3.2E-16 1.1E-20 157.4 14.6 151 339-535 6-205 (214)
96 1zbd_A Rabphilin-3A; G protein 99.7 5.1E-16 1.8E-20 154.4 16.0 151 339-535 7-160 (203)
97 1g16_A RAS-related protein SEC 99.7 1.4E-16 4.8E-21 152.6 11.3 147 340-535 3-154 (170)
98 2p5s_A RAS and EF-hand domain 99.7 1.8E-16 6.3E-21 157.7 12.6 156 338-535 26-186 (199)
99 1ega_A Protein (GTP-binding pr 99.7 6.9E-17 2.4E-21 173.1 9.9 149 339-535 7-164 (301)
100 3cph_A RAS-related protein SEC 99.7 1.9E-16 6.6E-21 158.3 12.5 149 338-535 18-171 (213)
101 3t5g_A GTP-binding protein RHE 99.7 1E-16 3.4E-21 156.2 9.9 152 339-535 5-158 (181)
102 2b6h_A ADP-ribosylation factor 99.7 1.1E-16 3.7E-21 159.0 10.3 150 338-535 27-180 (192)
103 2wjg_A FEOB, ferrous iron tran 99.7 3.8E-16 1.3E-20 153.0 13.5 146 338-535 5-158 (188)
104 1vg8_A RAS-related protein RAB 99.7 6.7E-17 2.3E-21 160.9 8.2 150 338-535 6-164 (207)
105 3dz8_A RAS-related protein RAB 99.7 3.3E-16 1.1E-20 154.7 12.7 151 339-535 22-175 (191)
106 2ce2_X GTPase HRAS; signaling 99.7 5.1E-16 1.7E-20 147.3 13.5 147 339-535 2-154 (166)
107 2bcg_Y Protein YP2, GTP-bindin 99.7 3.3E-16 1.1E-20 156.3 12.5 149 339-535 7-160 (206)
108 2f7s_A C25KG, RAS-related prot 99.7 7.7E-16 2.6E-20 154.9 15.0 147 338-535 23-188 (217)
109 1mky_A Probable GTP-binding pr 99.7 4.5E-16 1.5E-20 175.1 14.8 144 341-535 2-155 (439)
110 1x3s_A RAS-related protein RAB 99.7 1.2E-16 4.1E-21 157.1 8.8 151 338-535 13-167 (195)
111 1mh1_A RAC1; GTP-binding, GTPa 99.7 5.6E-16 1.9E-20 150.9 13.3 155 338-535 3-169 (186)
112 1moz_A ARL1, ADP-ribosylation 99.7 4.3E-17 1.5E-21 158.9 5.4 150 338-535 16-169 (183)
113 2gj8_A MNME, tRNA modification 99.7 2.4E-16 8.2E-21 154.0 10.5 141 340-535 4-155 (172)
114 2qu8_A Putative nucleolar GTP- 99.7 1.2E-15 4.1E-20 155.6 15.9 156 339-535 28-194 (228)
115 3llu_A RAS-related GTP-binding 99.7 4.9E-16 1.7E-20 154.5 12.5 161 336-535 16-186 (196)
116 4gzl_A RAS-related C3 botulinu 99.6 7.5E-16 2.6E-20 154.4 13.9 154 338-535 28-194 (204)
117 1mky_A Probable GTP-binding pr 99.6 5.5E-16 1.9E-20 174.4 14.3 154 339-535 179-344 (439)
118 3t1o_A Gliding protein MGLA; G 99.6 5.1E-16 1.7E-20 152.5 12.3 159 339-535 13-181 (198)
119 2hjg_A GTP-binding protein ENG 99.6 1.3E-16 4.6E-21 179.3 9.1 144 340-535 3-154 (436)
120 3q85_A GTP-binding protein REM 99.6 7.1E-16 2.4E-20 148.0 12.7 148 340-535 2-156 (169)
121 1f6b_A SAR1; gtpases, N-termin 99.6 1.1E-16 3.7E-21 160.0 7.2 149 339-535 24-188 (198)
122 3con_A GTPase NRAS; structural 99.6 9.8E-16 3.4E-20 150.5 13.7 150 336-535 17-172 (190)
123 3cpj_B GTP-binding protein YPT 99.6 4.1E-16 1.4E-20 158.3 11.2 149 339-535 12-165 (223)
124 3oes_A GTPase rhebl1; small GT 99.6 2.8E-16 9.4E-21 156.7 9.5 154 338-535 22-176 (201)
125 3qq5_A Small GTP-binding prote 99.6 1.4E-16 4.8E-21 178.4 8.1 145 339-535 33-185 (423)
126 2x77_A ADP-ribosylation factor 99.6 6.6E-17 2.3E-21 159.1 4.7 149 339-535 21-173 (189)
127 2j1l_A RHO-related GTP-binding 99.6 1.7E-15 5.7E-20 153.0 15.1 155 337-535 31-198 (214)
128 3reg_A RHO-like small GTPase; 99.6 6.5E-16 2.2E-20 152.8 11.3 153 338-535 21-177 (194)
129 2xtp_A GTPase IMAP family memb 99.6 4.5E-16 1.6E-20 162.1 10.5 157 338-535 20-197 (260)
130 3b1v_A Ferrous iron uptake tra 99.6 6E-16 2E-20 163.6 11.2 143 340-535 3-153 (272)
131 3gj0_A GTP-binding nuclear pro 99.6 8.8E-16 3E-20 155.4 11.9 153 335-535 10-164 (221)
132 2gf0_A GTP-binding protein DI- 99.6 3E-15 1E-19 147.8 15.2 149 339-535 7-160 (199)
133 2atv_A RERG, RAS-like estrogen 99.6 2.1E-15 7E-20 149.6 13.8 152 339-535 27-180 (196)
134 2yc2_C IFT27, small RAB-relate 99.6 5.6E-16 1.9E-20 153.9 9.6 151 339-535 19-181 (208)
135 3o47_A ADP-ribosylation factor 99.6 3.6E-16 1.2E-20 169.6 8.8 151 338-535 163-316 (329)
136 2gco_A H9, RHO-related GTP-bin 99.6 1.8E-15 6.1E-20 151.0 13.1 154 338-535 23-189 (201)
137 4dkx_A RAS-related protein RAB 99.6 2.6E-15 8.8E-20 153.4 14.0 154 337-535 10-165 (216)
138 2atx_A Small GTP binding prote 99.6 2.2E-15 7.5E-20 148.7 12.8 152 339-535 17-182 (194)
139 3gee_A MNME, tRNA modification 99.6 1.4E-15 4.9E-20 172.7 12.8 148 339-535 232-387 (476)
140 2fv8_A H6, RHO-related GTP-bin 99.6 3.5E-15 1.2E-19 149.6 14.1 153 339-535 24-189 (207)
141 4djt_A GTP-binding nuclear pro 99.6 9.5E-16 3.2E-20 154.4 9.9 155 338-535 9-164 (218)
142 3r7w_A Gtpase1, GTP-binding pr 99.6 4.6E-15 1.6E-19 159.2 15.3 158 340-535 3-170 (307)
143 3ihw_A Centg3; RAS, centaurin, 99.6 1.5E-15 5.1E-20 149.9 10.1 148 336-535 16-169 (184)
144 3bwd_D RAC-like GTP-binding pr 99.6 1E-15 3.4E-20 148.8 8.6 152 339-535 7-170 (182)
145 4dcu_A GTP-binding protein ENG 99.6 7.6E-16 2.6E-20 174.1 8.8 147 337-535 20-174 (456)
146 3lxw_A GTPase IMAP family memb 99.6 3.5E-15 1.2E-19 155.2 12.2 154 338-535 19-197 (247)
147 2j0v_A RAC-like GTP-binding pr 99.6 3.9E-15 1.3E-19 149.3 11.8 155 339-535 8-169 (212)
148 2q3h_A RAS homolog gene family 99.6 5.2E-15 1.8E-19 146.9 12.7 154 337-535 17-184 (201)
149 3l0i_B RAS-related protein RAB 99.6 5.1E-17 1.7E-21 161.8 -2.0 150 338-535 31-185 (199)
150 3lvq_E ARF-GAP with SH3 domain 99.6 3E-15 1E-19 170.7 11.2 151 338-535 320-473 (497)
151 3cbq_A GTP-binding protein REM 99.6 6.2E-15 2.1E-19 147.0 12.0 150 338-535 21-177 (195)
152 3t5d_A Septin-7; GTP-binding p 99.6 1E-14 3.4E-19 153.8 14.2 157 340-535 8-193 (274)
153 1xzp_A Probable tRNA modificat 99.6 1.9E-15 6.6E-20 171.8 8.7 143 340-535 243-394 (482)
154 3c5c_A RAS-like protein 12; GD 99.6 9.2E-15 3.1E-19 144.3 12.0 154 338-535 19-175 (187)
155 3q3j_B RHO-related GTP-binding 99.6 1E-14 3.6E-19 147.5 12.3 158 336-535 23-192 (214)
156 2cxx_A Probable GTP-binding pr 99.6 7.6E-15 2.6E-19 143.5 10.8 150 341-535 2-173 (190)
157 2iwr_A Centaurin gamma 1; ANK 99.6 2.2E-14 7.4E-19 139.2 13.1 146 338-535 5-158 (178)
158 1m7b_A RND3/RHOE small GTP-bin 99.6 1.7E-14 5.7E-19 141.6 12.3 155 338-535 5-172 (184)
159 3geh_A MNME, tRNA modification 99.5 3.6E-15 1.2E-19 168.8 7.8 143 339-535 223-373 (462)
160 1gwn_A RHO-related GTP-binding 99.5 3.2E-14 1.1E-18 143.2 12.1 154 338-535 26-193 (205)
161 3th5_A RAS-related C3 botulinu 99.3 7.3E-16 2.5E-20 153.8 0.0 154 338-535 28-194 (204)
162 2g3y_A GTP-binding protein GEM 99.5 4.5E-14 1.5E-18 143.6 11.4 150 339-535 36-192 (211)
163 1lnz_A SPO0B-associated GTP-bi 99.5 6.2E-15 2.1E-19 160.8 5.3 149 340-535 158-319 (342)
164 2qtf_A Protein HFLX, GTP-bindi 99.5 6.6E-14 2.3E-18 153.9 13.4 154 340-535 179-343 (364)
165 2wkq_A NPH1-1, RAS-related C3 99.5 1.1E-13 3.8E-18 147.9 14.4 153 339-535 154-319 (332)
166 3lxx_A GTPase IMAP family memb 99.5 9.8E-14 3.4E-18 142.7 13.0 147 338-530 27-193 (239)
167 2cjw_A GTP-binding protein GEM 99.5 7.7E-14 2.6E-18 138.7 11.0 150 339-535 5-161 (192)
168 1nrj_B SR-beta, signal recogni 99.5 3.3E-14 1.1E-18 143.1 8.1 152 338-533 10-171 (218)
169 2zej_A Dardarin, leucine-rich 99.5 8.1E-14 2.8E-18 137.0 10.0 157 340-535 2-167 (184)
170 2aka_B Dynamin-1; fusion prote 99.5 1E-13 3.6E-18 146.5 11.5 104 417-535 124-242 (299)
171 2e87_A Hypothetical protein PH 99.5 3E-13 1E-17 148.0 15.4 149 339-535 166-325 (357)
172 1h65_A Chloroplast outer envel 99.5 2.9E-13 9.9E-18 142.2 14.6 184 338-560 37-244 (270)
173 3def_A T7I23.11 protein; chlor 99.5 5.9E-14 2E-18 146.9 9.1 126 338-500 34-172 (262)
174 3dpu_A RAB family protein; roc 99.4 1.2E-13 4E-18 159.2 9.7 149 338-535 39-197 (535)
175 1pui_A ENGB, probable GTP-bind 99.4 6.6E-13 2.2E-17 132.6 13.2 151 339-535 25-188 (210)
176 2f9l_A RAB11B, member RAS onco 99.4 1.1E-12 3.6E-17 130.6 13.2 148 340-535 5-157 (199)
177 1jwy_B Dynamin A GTPase domain 99.4 2.1E-13 7.2E-18 145.6 7.9 71 416-494 129-213 (315)
178 2j69_A Bacterial dynamin-like 99.4 1.6E-12 5.4E-17 154.3 14.4 109 418-535 174-314 (695)
179 2ged_A SR-beta, signal recogni 99.4 2.6E-13 9E-18 133.5 5.3 130 338-508 46-183 (193)
180 1wxq_A GTP-binding protein; st 99.4 9E-13 3.1E-17 146.5 9.5 83 341-454 1-114 (397)
181 1oix_A RAS-related protein RAB 99.3 5.8E-12 2E-16 124.8 13.4 149 339-535 28-181 (191)
182 3c5h_A Glucocorticoid receptor 99.3 3.3E-13 1.1E-17 140.8 4.1 83 441-535 162-244 (255)
183 3p32_A Probable GTPase RV1496/ 99.3 2.6E-12 8.7E-17 140.7 10.2 103 415-535 169-273 (355)
184 3r7w_B Gtpase2, GTP-binding pr 99.3 2.8E-12 9.7E-17 138.4 7.6 155 342-535 1-163 (331)
185 2p67_A LAO/AO transport system 99.3 5E-12 1.7E-16 137.7 9.6 103 415-535 146-250 (341)
186 2www_A Methylmalonic aciduria 99.3 1.7E-11 5.7E-16 134.0 12.1 103 415-535 164-268 (349)
187 1udx_A The GTP-binding protein 99.3 6.5E-12 2.2E-16 140.2 8.9 148 341-535 158-314 (416)
188 2qpt_A EH domain-containing pr 99.2 1.6E-11 5.6E-16 141.8 11.9 80 418-507 154-244 (550)
189 2qag_A Septin-2, protein NEDD5 99.2 1.7E-11 5.9E-16 134.5 10.5 156 339-532 36-220 (361)
190 2x2e_A Dynamin-1; nitration, h 99.2 1.6E-11 5.4E-16 134.1 9.6 105 416-535 128-247 (353)
191 2wsm_A Hydrogenase expression/ 99.2 8.1E-12 2.8E-16 125.9 5.8 97 416-535 107-203 (221)
192 3t34_A Dynamin-related protein 99.2 3.3E-11 1.1E-15 131.9 10.8 105 416-536 134-251 (360)
193 3zvr_A Dynamin-1; hydrolase, D 99.2 2.8E-11 9.7E-16 143.5 10.1 106 416-536 148-268 (772)
194 4a9a_A Ribosome-interacting GT 99.1 8E-11 2.7E-15 129.6 10.1 114 339-492 71-195 (376)
195 1yrb_A ATP(GTP)binding protein 99.1 5.5E-10 1.9E-14 115.6 13.1 109 417-535 108-246 (262)
196 1jal_A YCHF protein; nucleotid 98.9 1.4E-09 4.7E-14 119.2 9.2 82 341-453 3-108 (363)
197 1cip_A Protein (guanine nucleo 98.9 4.8E-09 1.6E-13 114.8 11.1 131 403-535 178-333 (353)
198 2qm8_A GTPase/ATPase; G protei 98.9 3.5E-09 1.2E-13 115.1 10.0 104 415-535 145-250 (337)
199 2qnr_A Septin-2, protein NEDD5 98.9 5.3E-09 1.8E-13 111.9 10.7 158 339-535 17-203 (301)
200 2qag_C Septin-7; cell cycle, c 98.9 7.8E-09 2.7E-13 115.5 12.4 157 339-535 30-216 (418)
201 1zcb_A G alpha I/13; GTP-bindi 98.8 7.2E-09 2.5E-13 113.7 10.7 130 404-535 187-342 (362)
202 1xe1_A Hypothetical protein PF 98.8 6.5E-09 2.2E-13 94.7 8.5 80 566-650 32-112 (116)
203 2hf9_A Probable hydrogenase ni 98.8 1.3E-08 4.4E-13 102.7 11.4 96 417-535 118-213 (226)
204 2j37_W Signal recognition part 98.8 2.3E-09 7.7E-14 122.4 5.7 67 416-493 182-254 (504)
205 2dby_A GTP-binding protein; GD 98.8 4.1E-09 1.4E-13 115.8 7.6 37 417-453 68-111 (368)
206 3ohm_A Guanine nucleotide-bind 98.8 1.5E-08 5.3E-13 109.5 10.1 129 402-535 151-307 (327)
207 4fid_A G protein alpha subunit 98.7 2.6E-08 9E-13 108.2 9.8 90 402-493 145-242 (340)
208 2qag_B Septin-6, protein NEDD5 98.6 9.6E-08 3.3E-12 106.6 11.8 144 340-527 42-217 (427)
209 3ec1_A YQEH GTPase; atnos1, at 98.6 5.7E-09 1.9E-13 114.8 1.0 146 341-533 163-318 (369)
210 3h2y_A GTPase family protein; 98.6 1.1E-08 3.7E-13 112.5 2.1 147 341-533 161-317 (368)
211 3dm5_A SRP54, signal recogniti 98.5 3.7E-07 1.3E-11 102.4 12.6 164 339-535 99-280 (443)
212 3sop_A Neuronal-specific septi 98.5 6.8E-07 2.3E-11 94.1 12.9 142 340-515 2-174 (270)
213 2ohf_A Protein OLA1, GTP-bindi 98.5 1.1E-07 3.6E-12 105.4 5.8 84 339-453 21-128 (396)
214 2v3c_C SRP54, signal recogniti 98.4 1E-07 3.5E-12 107.0 4.9 67 416-493 179-252 (432)
215 1nj3_A NPL4; NZF domain, rubre 98.4 9.6E-08 3.3E-12 67.2 2.4 26 49-74 5-30 (31)
216 1tq4_A IIGP1, interferon-induc 98.4 1.8E-06 6E-11 96.3 13.9 155 340-535 69-242 (413)
217 2d9g_A YY1-associated factor 2 98.4 1.2E-07 4.1E-12 74.9 3.0 33 44-76 5-37 (53)
218 3kl4_A SRP54, signal recogniti 98.4 1.3E-06 4.5E-11 97.8 11.3 163 339-535 96-279 (433)
219 3a9j_C Mitogen-activated prote 98.3 2.1E-07 7E-12 66.9 2.4 28 48-75 6-33 (34)
220 1ni3_A YCHF GTPase, YCHF GTP-b 98.2 1.5E-06 5E-11 96.3 7.7 84 340-453 20-127 (392)
221 1u0l_A Probable GTPase ENGC; p 98.2 1.5E-06 5.1E-11 92.8 7.4 99 419-535 64-162 (301)
222 2crc_A Ubiquitin conjugating e 98.1 1.1E-06 3.7E-11 69.0 3.0 30 47-76 7-36 (52)
223 1j8m_F SRP54, signal recogniti 98.1 4.8E-06 1.6E-10 88.8 9.0 66 416-492 179-252 (297)
224 1azs_C GS-alpha; complex (lyas 98.1 2.2E-06 7.4E-11 95.1 6.0 88 404-493 203-298 (402)
225 2xtz_A Guanine nucleotide-bind 98.0 3.1E-06 1E-10 92.6 4.4 73 416-493 181-264 (354)
226 3b08_B Ranbp-type and C3HC4-ty 98.0 1.9E-06 6.4E-11 70.2 1.8 28 49-76 7-34 (64)
227 1puj_A YLQF, conserved hypothe 98.0 1.3E-05 4.6E-10 84.7 8.8 92 422-535 3-95 (282)
228 2xxa_A Signal recognition part 97.9 3.7E-05 1.3E-09 86.1 10.4 65 416-492 182-253 (433)
229 3e70_C DPA, signal recognition 97.8 0.00012 4E-09 79.2 13.7 92 417-535 211-309 (328)
230 1puj_A YLQF, conserved hypothe 97.8 1.4E-05 4.7E-10 84.6 5.2 58 339-429 119-176 (282)
231 2yv5_A YJEQ protein; hydrolase 97.8 4.7E-05 1.6E-09 81.2 9.2 84 437-535 75-158 (302)
232 1f5n_A Interferon-induced guan 97.7 8.9E-06 3.1E-10 94.3 2.3 26 338-363 36-61 (592)
233 2yhs_A FTSY, cell division pro 97.7 3.1E-05 1.1E-09 87.8 6.3 25 339-363 292-316 (503)
234 3ec1_A YQEH GTPase; atnos1, at 97.7 4.4E-05 1.5E-09 83.7 7.3 101 420-535 51-151 (369)
235 3h2y_A GTPase family protein; 97.7 4.7E-05 1.6E-09 83.5 6.9 95 427-535 55-149 (368)
236 1vma_A Cell division protein F 97.6 0.0003 1E-08 75.2 11.8 24 340-363 104-127 (306)
237 1d1n_A Initiation factor 2; be 97.5 0.00014 4.9E-09 64.5 6.5 77 571-650 9-89 (99)
238 2ffh_A Protein (FFH); SRP54, s 97.5 0.00053 1.8E-08 76.5 12.4 135 339-492 97-250 (425)
239 1t9h_A YLOQ, probable GTPase E 97.5 0.00022 7.5E-09 76.3 8.8 84 438-535 83-166 (307)
240 3gj3_B Nuclear pore complex pr 97.5 4E-05 1.4E-09 54.4 1.9 29 47-75 4-32 (33)
241 1rj9_A FTSY, signal recognitio 97.4 8.9E-05 3E-09 79.2 5.2 24 340-363 102-125 (304)
242 3cnl_A YLQF, putative uncharac 97.4 7.3E-05 2.5E-09 78.2 4.3 86 425-535 4-90 (262)
243 1zu4_A FTSY; GTPase, signal re 97.4 0.00076 2.6E-08 72.5 11.8 25 339-363 104-128 (320)
244 3l82_B F-box only protein 4; T 97.3 0.00013 4.4E-09 73.8 4.3 172 338-535 14-212 (227)
245 3szr_A Interferon-induced GTP- 97.3 0.00053 1.8E-08 80.1 10.2 68 416-494 145-229 (608)
246 3cnl_A YLQF, putative uncharac 97.3 7.9E-05 2.7E-09 77.9 2.7 22 341-362 100-121 (262)
247 2px0_A Flagellar biosynthesis 97.3 0.00083 2.8E-08 71.4 10.3 24 340-363 105-128 (296)
248 2crv_A IF-2MT, translation ini 97.2 0.00072 2.5E-08 61.9 7.4 79 570-650 12-97 (120)
249 2ebq_A Nuclear pore complex pr 97.1 0.00028 9.5E-09 54.0 2.7 33 44-76 5-37 (47)
250 3b9q_A Chloroplast SRP recepto 96.9 0.00068 2.3E-08 72.3 5.5 24 340-363 100-123 (302)
251 2og2_A Putative signal recogni 96.9 0.00068 2.3E-08 74.1 5.4 25 339-363 156-180 (359)
252 4dzz_A Plasmid partitioning pr 96.9 0.0047 1.6E-07 60.5 11.0 65 416-492 74-143 (206)
253 3l2o_B F-box only protein 4; s 96.9 0.00083 2.8E-08 71.1 5.6 98 426-535 195-297 (312)
254 1ls1_A Signal recognition part 96.9 0.00083 2.8E-08 71.3 5.5 25 339-363 97-121 (295)
255 3gj5_B Nuclear pore complex pr 96.8 0.00049 1.7E-08 49.1 1.8 29 47-75 4-32 (34)
256 1zo1_I IF2, translation initia 96.7 0.0023 7.7E-08 73.0 7.6 90 558-650 398-491 (501)
257 2ebr_A Nuclear pore complex pr 96.7 0.0011 3.8E-08 50.8 3.2 31 46-76 7-37 (47)
258 2rcn_A Probable GTPase ENGC; Y 96.5 0.0054 1.8E-07 66.9 9.0 82 438-535 127-208 (358)
259 1w7p_D VPS36P, YLR417W; ESCRT- 96.5 0.00042 1.4E-08 79.2 0.0 27 50-76 180-206 (566)
260 3q5d_A Atlastin-1; G protein, 96.4 0.0056 1.9E-07 68.7 8.1 26 338-363 65-90 (447)
261 3izy_P Translation initiation 96.2 0.011 3.9E-07 67.7 9.3 182 420-650 343-534 (537)
262 3cwq_A Para family chromosome 96.0 0.031 1.1E-06 55.7 10.9 66 416-492 66-133 (209)
263 1g7s_A Translation initiation 95.7 0.022 7.4E-07 66.2 9.1 82 568-651 463-548 (594)
264 3gj7_B Nuclear pore complex pr 95.5 0.0044 1.5E-07 55.0 1.9 29 47-75 69-97 (98)
265 2ebv_A Nuclear pore complex pr 94.9 0.013 4.3E-07 46.7 2.5 29 47-75 28-56 (57)
266 3t61_A Gluconokinase; PSI-biol 94.5 0.049 1.7E-06 53.4 6.5 27 340-366 18-44 (202)
267 2lk0_A RNA-binding protein 5; 94.4 0.014 5E-07 40.9 1.6 28 48-75 3-30 (32)
268 3end_A Light-independent proto 94.4 0.077 2.6E-06 55.7 8.0 67 416-491 155-225 (307)
269 1t9h_A YLOQ, probable GTPase E 94.4 0.0069 2.3E-07 64.7 -0.2 23 341-363 174-196 (307)
270 3gj7_B Nuclear pore complex pr 94.1 0.009 3.1E-07 53.0 0.0 30 47-76 6-35 (98)
271 2k1p_A Zinc finger RAN-binding 93.6 0.045 1.5E-06 38.7 2.9 29 47-75 3-31 (33)
272 1ye8_A Protein THEP1, hypothet 93.5 0.04 1.4E-06 53.8 3.4 23 342-364 2-24 (178)
273 1lvg_A Guanylate kinase, GMP k 93.2 0.039 1.3E-06 54.5 2.8 24 341-364 5-28 (198)
274 1kgd_A CASK, peripheral plasma 93.2 0.053 1.8E-06 52.5 3.7 24 341-364 6-29 (180)
275 1bif_A 6-phosphofructo-2-kinas 93.1 0.054 1.8E-06 60.9 4.2 25 339-363 38-62 (469)
276 3c8u_A Fructokinase; YP_612366 92.6 0.066 2.2E-06 53.0 3.6 26 339-364 21-46 (208)
277 3gj8_B Nuclear pore complex pr 92.6 0.042 1.4E-06 48.2 1.8 29 47-75 62-90 (92)
278 3tr0_A Guanylate kinase, GMP k 92.6 0.072 2.5E-06 52.0 3.8 24 341-364 8-31 (205)
279 3ney_A 55 kDa erythrocyte memb 92.6 0.07 2.4E-06 53.2 3.7 27 338-364 17-43 (197)
280 1znw_A Guanylate kinase, GMP k 92.4 0.069 2.4E-06 52.8 3.4 24 341-364 21-44 (207)
281 3a00_A Guanylate kinase, GMP k 92.4 0.063 2.2E-06 52.2 3.0 23 342-364 3-25 (186)
282 3asz_A Uridine kinase; cytidin 92.4 0.087 3E-06 51.8 4.1 26 340-365 6-31 (211)
283 1knq_A Gluconate kinase; ALFA/ 92.3 0.11 3.6E-06 49.6 4.5 27 340-366 8-34 (175)
284 1zp6_A Hypothetical protein AT 92.3 0.088 3E-06 50.8 4.0 23 341-363 10-32 (191)
285 1g3q_A MIND ATPase, cell divis 92.2 0.21 7.3E-06 49.8 6.9 67 416-492 110-176 (237)
286 3kjh_A CO dehydrogenase/acetyl 92.2 0.14 4.8E-06 51.2 5.5 66 416-491 130-195 (254)
287 1kag_A SKI, shikimate kinase I 92.1 0.078 2.7E-06 50.3 3.3 26 341-366 5-30 (173)
288 4eun_A Thermoresistant glucoki 92.1 0.093 3.2E-06 51.5 3.9 27 340-366 29-55 (200)
289 1z6g_A Guanylate kinase; struc 92.1 0.074 2.5E-06 53.3 3.2 24 341-364 24-47 (218)
290 2ph1_A Nucleotide-binding prot 92.0 0.31 1.1E-05 49.9 7.9 68 416-491 127-194 (262)
291 2j41_A Guanylate kinase; GMP, 91.8 0.1 3.5E-06 50.9 3.8 25 340-364 6-30 (207)
292 1tev_A UMP-CMP kinase; ploop, 91.7 0.11 3.6E-06 50.0 3.8 27 339-365 2-28 (196)
293 3gj8_B Nuclear pore complex pr 91.6 0.033 1.1E-06 48.8 0.0 29 48-76 6-34 (92)
294 1hyq_A MIND, cell division inh 91.6 0.27 9.2E-06 50.0 6.8 67 416-492 109-175 (263)
295 4gp7_A Metallophosphoesterase; 91.6 0.076 2.6E-06 51.0 2.5 22 341-362 10-31 (171)
296 3tau_A Guanylate kinase, GMP k 91.5 0.11 3.9E-06 51.4 3.7 25 340-364 8-32 (208)
297 3kb2_A SPBC2 prophage-derived 91.4 0.11 3.9E-06 48.8 3.6 24 342-365 3-26 (173)
298 2bbw_A Adenylate kinase 4, AK4 91.4 0.12 4.2E-06 52.4 4.0 27 340-366 27-53 (246)
299 1cke_A CK, MSSA, protein (cyti 91.3 0.13 4.3E-06 51.1 3.9 25 341-365 6-30 (227)
300 1qhx_A CPT, protein (chloramph 91.3 0.13 4.6E-06 48.9 3.9 25 341-365 4-28 (178)
301 2rhm_A Putative kinase; P-loop 91.3 0.15 5.3E-06 48.9 4.4 27 340-366 5-31 (193)
302 1htw_A HI0065; nucleotide-bind 91.3 0.11 3.9E-06 49.6 3.4 24 341-364 34-57 (158)
303 1kht_A Adenylate kinase; phosp 91.2 0.11 3.8E-06 49.8 3.3 26 340-365 3-28 (192)
304 1s96_A Guanylate kinase, GMP k 91.1 0.12 4.2E-06 52.1 3.7 25 340-364 16-40 (219)
305 2plr_A DTMP kinase, probable t 91.1 0.14 4.8E-06 49.9 4.0 28 339-366 3-30 (213)
306 3lw7_A Adenylate kinase relate 91.1 0.11 3.8E-06 48.6 3.1 25 341-366 2-26 (179)
307 2jeo_A Uridine-cytidine kinase 91.1 0.14 4.9E-06 51.9 4.2 27 340-366 25-51 (245)
308 3cm0_A Adenylate kinase; ATP-b 91.0 0.14 4.9E-06 49.0 3.8 26 340-365 4-29 (186)
309 2jaq_A Deoxyguanosine kinase; 90.9 0.14 4.8E-06 49.6 3.7 25 342-366 2-26 (205)
310 2pcj_A ABC transporter, lipopr 90.8 0.11 3.6E-06 52.6 2.8 22 342-363 32-53 (224)
311 2bdt_A BH3686; alpha-beta prot 90.8 0.13 4.4E-06 49.8 3.2 22 342-363 4-25 (189)
312 2rcn_A Probable GTPase ENGC; Y 90.7 0.12 4E-06 56.3 3.2 23 341-363 216-238 (358)
313 1ly1_A Polynucleotide kinase; 90.7 0.14 4.9E-06 48.5 3.4 22 341-362 3-24 (181)
314 3tif_A Uncharacterized ABC tra 90.7 0.1 3.5E-06 53.2 2.6 22 342-363 33-54 (235)
315 2j9u_B VPS36, vacuolar protein 90.5 0.067 2.3E-06 44.6 0.8 27 50-76 17-52 (76)
316 1n0z_A ZNF265; zinc finger, RN 90.5 0.2 6.9E-06 37.9 3.4 29 47-75 11-41 (45)
317 2c95_A Adenylate kinase 1; tra 90.4 0.19 6.6E-06 48.4 4.2 28 339-366 8-35 (196)
318 2qor_A Guanylate kinase; phosp 90.4 0.13 4.4E-06 50.7 2.9 25 340-364 12-36 (204)
319 2if2_A Dephospho-COA kinase; a 90.3 0.16 5.6E-06 49.5 3.7 24 341-365 2-25 (204)
320 3trf_A Shikimate kinase, SK; a 90.3 0.17 5.8E-06 48.5 3.7 27 340-366 5-31 (185)
321 2onk_A Molybdate/tungstate ABC 90.3 0.13 4.6E-06 52.6 3.1 22 342-363 26-47 (240)
322 2v9p_A Replication protein E1; 90.3 0.14 4.9E-06 54.4 3.3 24 341-364 127-150 (305)
323 3fb4_A Adenylate kinase; psych 90.2 0.18 6E-06 49.8 3.8 25 342-366 2-26 (216)
324 2yv5_A YJEQ protein; hydrolase 90.2 0.14 4.9E-06 54.1 3.2 21 341-361 166-186 (302)
325 3vaa_A Shikimate kinase, SK; s 90.2 0.18 6.3E-06 49.3 3.8 26 341-366 26-51 (199)
326 3b85_A Phosphate starvation-in 90.1 0.13 4.5E-06 51.5 2.7 21 342-362 24-44 (208)
327 2eyu_A Twitching motility prot 90.1 0.16 5.4E-06 52.7 3.5 23 341-363 26-48 (261)
328 1uf9_A TT1252 protein; P-loop, 90.1 0.2 6.8E-06 48.6 4.0 25 339-363 7-31 (203)
329 2cbz_A Multidrug resistance-as 90.1 0.12 4.2E-06 52.7 2.6 22 341-362 32-53 (237)
330 2i3b_A HCR-ntpase, human cance 90.0 0.14 4.7E-06 50.5 2.8 22 342-363 3-24 (189)
331 3aez_A Pantothenate kinase; tr 90.0 0.18 6.1E-06 53.7 3.9 26 339-364 89-114 (312)
332 2pze_A Cystic fibrosis transme 90.0 0.13 4.3E-06 52.2 2.5 21 342-362 36-56 (229)
333 1nks_A Adenylate kinase; therm 90.0 0.18 6.2E-06 48.2 3.5 25 341-365 2-26 (194)
334 3uie_A Adenylyl-sulfate kinase 89.9 0.21 7E-06 49.0 4.0 25 340-364 25-49 (200)
335 1mv5_A LMRA, multidrug resista 89.8 0.13 4.5E-06 52.6 2.5 23 341-363 29-51 (243)
336 3dl0_A Adenylate kinase; phosp 89.8 0.2 6.7E-06 49.5 3.8 25 342-366 2-26 (216)
337 1g6h_A High-affinity branched- 89.8 0.13 4.6E-06 53.0 2.6 22 342-363 35-56 (257)
338 2d2e_A SUFC protein; ABC-ATPas 89.8 0.16 5.3E-06 52.3 3.1 21 342-362 31-51 (250)
339 1uj2_A Uridine-cytidine kinase 89.8 0.2 7E-06 51.0 4.0 27 339-365 21-47 (252)
340 1aky_A Adenylate kinase; ATP:A 89.8 0.2 6.9E-06 49.7 3.8 28 339-366 3-30 (220)
341 2yvu_A Probable adenylyl-sulfa 89.7 0.25 8.5E-06 47.6 4.3 26 338-363 11-36 (186)
342 2wwf_A Thymidilate kinase, put 89.7 0.21 7E-06 48.9 3.8 26 339-364 9-34 (212)
343 1np6_A Molybdopterin-guanine d 89.7 0.19 6.6E-06 48.9 3.5 23 340-362 6-28 (174)
344 2ff7_A Alpha-hemolysin translo 89.6 0.14 4.8E-06 52.6 2.6 22 342-363 37-58 (247)
345 2f1r_A Molybdopterin-guanine d 89.6 0.11 3.7E-06 50.5 1.6 22 341-362 3-24 (171)
346 3tlx_A Adenylate kinase 2; str 89.6 0.24 8E-06 50.5 4.2 28 339-366 28-55 (243)
347 2v54_A DTMP kinase, thymidylat 89.6 0.21 7.1E-06 48.6 3.7 25 340-364 4-28 (204)
348 4g1u_C Hemin import ATP-bindin 89.6 0.14 4.7E-06 53.4 2.4 22 342-363 39-60 (266)
349 2qt1_A Nicotinamide riboside k 89.6 0.23 7.7E-06 48.8 3.9 25 340-364 21-45 (207)
350 1b0u_A Histidine permease; ABC 89.5 0.14 4.9E-06 53.0 2.5 22 342-363 34-55 (262)
351 2cdn_A Adenylate kinase; phosp 89.5 0.25 8.5E-06 48.2 4.2 28 338-365 18-45 (201)
352 4a74_A DNA repair and recombin 89.5 0.19 6.6E-06 49.6 3.4 22 341-362 26-47 (231)
353 3gfo_A Cobalt import ATP-bindi 89.4 0.14 4.9E-06 53.5 2.5 22 342-363 36-57 (275)
354 1ji0_A ABC transporter; ATP bi 89.4 0.15 5.1E-06 52.1 2.6 22 342-363 34-55 (240)
355 4e22_A Cytidylate kinase; P-lo 89.4 0.23 7.7E-06 50.9 4.0 28 339-366 26-53 (252)
356 2ghi_A Transport protein; mult 89.4 0.15 5E-06 52.9 2.6 23 341-363 47-69 (260)
357 3la6_A Tyrosine-protein kinase 89.4 0.55 1.9E-05 49.2 7.0 67 417-492 201-267 (286)
358 1jjv_A Dephospho-COA kinase; P 89.4 0.2 6.9E-06 49.0 3.4 25 341-366 3-27 (206)
359 2zu0_C Probable ATP-dependent 89.3 0.18 6E-06 52.5 3.1 22 342-363 48-69 (267)
360 3hr8_A Protein RECA; alpha and 89.3 0.82 2.8E-05 49.6 8.5 22 341-362 62-83 (356)
361 1nn5_A Similar to deoxythymidy 89.3 0.23 8E-06 48.5 3.8 26 339-364 8-33 (215)
362 1sgw_A Putative ABC transporte 89.3 0.14 4.9E-06 51.5 2.3 22 342-363 37-58 (214)
363 3iij_A Coilin-interacting nucl 89.3 0.23 8E-06 47.5 3.7 28 339-366 10-37 (180)
364 2ehv_A Hypothetical protein PH 89.2 0.18 6.1E-06 50.5 3.0 21 341-361 31-51 (251)
365 2vli_A Antibiotic resistance p 89.2 0.17 5.9E-06 48.2 2.7 26 340-365 5-30 (183)
366 1y63_A LMAJ004144AAA protein; 89.2 0.28 9.7E-06 47.4 4.3 24 340-363 10-33 (184)
367 1ex7_A Guanylate kinase; subst 89.2 0.19 6.4E-06 49.6 3.0 21 343-363 4-24 (186)
368 2olj_A Amino acid ABC transpor 89.2 0.16 5.4E-06 52.8 2.5 23 341-363 51-73 (263)
369 1zd8_A GTP:AMP phosphotransfer 89.1 0.25 8.5E-06 49.4 3.9 27 340-366 7-33 (227)
370 3io5_A Recombination and repai 89.1 1.6 5.4E-05 46.8 10.3 21 342-362 30-50 (333)
371 1qf9_A UMP/CMP kinase, protein 89.0 0.32 1.1E-05 46.4 4.6 25 341-365 7-31 (194)
372 3zvl_A Bifunctional polynucleo 89.0 0.41 1.4E-05 52.9 5.9 25 339-363 257-281 (416)
373 3lnc_A Guanylate kinase, GMP k 89.0 0.14 4.8E-06 51.4 2.0 24 341-364 28-52 (231)
374 1ukz_A Uridylate kinase; trans 89.0 0.29 1E-05 47.6 4.3 28 339-366 14-41 (203)
375 1vpl_A ABC transporter, ATP-bi 89.0 0.16 5.6E-06 52.5 2.5 22 342-363 43-64 (256)
376 2qi9_C Vitamin B12 import ATP- 89.0 0.16 5.6E-06 52.2 2.5 22 342-363 28-49 (249)
377 2ixe_A Antigen peptide transpo 88.9 0.17 5.8E-06 52.8 2.6 23 341-363 46-68 (271)
378 1odf_A YGR205W, hypothetical 3 88.9 0.26 9.1E-06 51.8 4.1 26 339-364 30-55 (290)
379 2bwj_A Adenylate kinase 5; pho 88.8 0.28 9.4E-06 47.4 3.9 27 340-366 12-38 (199)
380 2vp4_A Deoxynucleoside kinase; 88.8 0.2 6.9E-06 50.4 3.0 26 338-363 18-43 (230)
381 2ihy_A ABC transporter, ATP-bi 88.7 0.17 5.9E-06 52.9 2.5 22 342-363 49-70 (279)
382 2yz2_A Putative ABC transporte 88.7 0.18 6.1E-06 52.4 2.6 22 342-363 35-56 (266)
383 1xjc_A MOBB protein homolog; s 88.7 0.26 8.9E-06 47.9 3.6 22 341-362 5-26 (169)
384 3tqc_A Pantothenate kinase; bi 88.7 0.28 9.4E-06 52.6 4.1 27 338-364 90-116 (321)
385 1rz3_A Hypothetical protein rb 88.6 0.32 1.1E-05 47.8 4.2 25 339-363 21-45 (201)
386 4ido_A Atlastin-1; GTPase, GTP 88.5 1.8 6E-05 48.5 10.6 25 338-362 65-89 (457)
387 2nq2_C Hypothetical ABC transp 88.5 0.18 6.3E-06 51.9 2.5 21 342-362 33-53 (253)
388 1e4v_A Adenylate kinase; trans 88.4 0.29 1E-05 48.3 3.9 24 342-365 2-25 (214)
389 1u0l_A Probable GTPase ENGC; p 88.4 0.22 7.4E-06 52.6 3.1 23 341-363 170-192 (301)
390 1via_A Shikimate kinase; struc 88.4 0.23 8E-06 47.3 3.0 25 342-366 6-30 (175)
391 1sq5_A Pantothenate kinase; P- 88.4 0.3 1E-05 51.7 4.1 27 339-365 79-105 (308)
392 2pt5_A Shikimate kinase, SK; a 88.3 0.29 1E-05 46.0 3.6 24 342-365 2-25 (168)
393 1zak_A Adenylate kinase; ATP:A 88.2 0.29 9.8E-06 48.7 3.6 26 341-366 6-31 (222)
394 3ec2_A DNA replication protein 88.1 0.24 8.1E-06 47.5 2.9 24 340-363 38-61 (180)
395 1nij_A Hypothetical protein YJ 88.0 0.26 8.9E-06 52.4 3.4 24 340-363 4-27 (318)
396 1lw7_A Transcriptional regulat 87.8 0.22 7.5E-06 53.8 2.7 25 341-365 171-195 (365)
397 2bbs_A Cystic fibrosis transme 87.8 0.23 8E-06 52.3 2.8 22 341-362 65-86 (290)
398 2gza_A Type IV secretion syste 87.7 0.24 8.2E-06 53.7 2.9 23 341-363 176-198 (361)
399 3jvv_A Twitching mobility prot 87.7 0.29 9.8E-06 53.2 3.5 23 341-363 124-146 (356)
400 2cr8_A MDM4 protein; ZF-ranbp 87.6 0.39 1.3E-05 36.9 3.1 31 50-80 11-41 (53)
401 3nh6_A ATP-binding cassette SU 87.6 0.15 5.1E-06 54.3 1.1 23 341-363 81-103 (306)
402 2pjz_A Hypothetical protein ST 87.5 0.23 7.9E-06 51.6 2.5 22 342-363 32-53 (263)
403 3ea0_A ATPase, para family; al 87.5 0.68 2.3E-05 46.2 6.0 66 417-492 118-185 (245)
404 1vht_A Dephospho-COA kinase; s 87.4 0.33 1.1E-05 48.0 3.5 25 340-365 4-28 (218)
405 2pt7_A CAG-ALFA; ATPase, prote 87.4 0.21 7.1E-06 53.6 2.1 23 341-363 172-194 (330)
406 2iyv_A Shikimate kinase, SK; t 87.3 0.29 9.8E-06 46.9 2.9 26 341-366 3-28 (184)
407 3kta_A Chromosome segregation 87.2 0.37 1.3E-05 46.1 3.6 24 342-365 28-51 (182)
408 2ewv_A Twitching motility prot 87.2 0.3 1E-05 53.2 3.3 22 341-362 137-158 (372)
409 3r20_A Cytidylate kinase; stru 87.1 0.36 1.2E-05 49.3 3.7 28 339-366 8-35 (233)
410 3be4_A Adenylate kinase; malar 87.0 0.39 1.3E-05 47.7 3.8 26 341-366 6-31 (217)
411 3bfv_A CAPA1, CAPB2, membrane 86.9 0.69 2.4E-05 48.0 5.8 67 417-492 191-257 (271)
412 1wcv_1 SOJ, segregation protei 86.9 1.8 6.2E-05 43.9 8.9 67 416-492 110-182 (257)
413 1gtv_A TMK, thymidylate kinase 86.8 0.19 6.5E-06 49.3 1.3 22 342-363 2-23 (214)
414 1gvn_B Zeta; postsegregational 86.8 0.38 1.3E-05 50.4 3.7 26 339-364 32-57 (287)
415 2pbr_A DTMP kinase, thymidylat 86.8 0.37 1.3E-05 46.2 3.3 23 342-364 2-24 (195)
416 1zuh_A Shikimate kinase; alpha 86.7 0.39 1.3E-05 45.3 3.5 26 341-366 8-33 (168)
417 2p5t_B PEZT; postsegregational 86.7 0.3 1E-05 49.9 2.8 27 339-365 31-57 (253)
418 3lda_A DNA repair protein RAD5 86.6 2 6.9E-05 47.3 9.6 21 341-361 179-199 (400)
419 1e6c_A Shikimate kinase; phosp 86.6 0.34 1.2E-05 45.7 2.9 25 342-366 4-28 (173)
420 3tui_C Methionine import ATP-b 86.5 0.32 1.1E-05 53.0 3.1 22 342-363 56-77 (366)
421 3fvq_A Fe(3+) IONS import ATP- 86.4 0.33 1.1E-05 52.8 3.1 22 342-363 32-53 (359)
422 2pez_A Bifunctional 3'-phospho 86.4 0.42 1.5E-05 45.6 3.5 24 340-363 5-28 (179)
423 2kjq_A DNAA-related protein; s 86.4 0.31 1.1E-05 45.9 2.5 22 341-362 37-58 (149)
424 4a1f_A DNAB helicase, replicat 86.3 2.6 8.7E-05 45.4 10.0 22 342-363 48-69 (338)
425 2ze6_A Isopentenyl transferase 86.3 0.43 1.5E-05 48.9 3.7 24 342-365 3-26 (253)
426 3umf_A Adenylate kinase; rossm 86.3 0.57 1.9E-05 47.2 4.5 28 339-366 28-55 (217)
427 1v5w_A DMC1, meiotic recombina 86.3 2.2 7.4E-05 45.7 9.4 23 341-363 123-145 (343)
428 3cio_A ETK, tyrosine-protein k 86.3 1 3.5E-05 47.3 6.8 67 417-492 213-279 (299)
429 2xb4_A Adenylate kinase; ATP-b 86.2 0.43 1.5E-05 47.7 3.6 24 342-365 2-25 (223)
430 2vhj_A Ntpase P4, P4; non- hyd 86.2 1 3.5E-05 48.3 6.7 21 342-362 125-145 (331)
431 3sr0_A Adenylate kinase; phosp 86.1 0.44 1.5E-05 47.5 3.6 25 342-366 2-26 (206)
432 2c6a_A Ubiquitin-protein ligas 86.1 0.41 1.4E-05 36.1 2.5 29 49-77 12-40 (46)
433 3bh0_A DNAB-like replicative h 86.0 1.8 6.3E-05 45.7 8.6 23 341-363 69-91 (315)
434 2oap_1 GSPE-2, type II secreti 86.0 0.3 1E-05 55.7 2.5 22 341-362 261-282 (511)
435 1ak2_A Adenylate kinase isoenz 85.9 0.5 1.7E-05 47.4 3.9 27 340-366 16-42 (233)
436 3k9g_A PF-32 protein; ssgcid, 85.8 1.3 4.5E-05 45.0 7.1 67 416-492 143-210 (267)
437 1p9r_A General secretion pathw 85.8 0.4 1.4E-05 53.2 3.5 23 341-363 168-190 (418)
438 3a4m_A L-seryl-tRNA(SEC) kinas 85.8 0.45 1.5E-05 48.9 3.5 24 340-363 4-27 (260)
439 1z47_A CYSA, putative ABC-tran 85.6 0.38 1.3E-05 52.2 3.1 22 342-363 43-64 (355)
440 2z0h_A DTMP kinase, thymidylat 85.6 0.45 1.5E-05 45.8 3.3 23 342-364 2-24 (197)
441 1q3t_A Cytidylate kinase; nucl 85.6 0.53 1.8E-05 47.3 3.9 36 337-372 13-50 (236)
442 2yyz_A Sugar ABC transporter, 85.5 0.39 1.3E-05 52.2 3.1 22 342-363 31-52 (359)
443 2z43_A DNA repair and recombin 85.3 2 6.7E-05 45.5 8.5 22 341-362 108-129 (324)
444 3ake_A Cytidylate kinase; CMP 85.3 0.57 1.9E-05 45.4 3.9 24 342-365 4-27 (208)
445 2it1_A 362AA long hypothetical 85.2 0.41 1.4E-05 52.1 3.1 22 342-363 31-52 (362)
446 3rlf_A Maltose/maltodextrin im 85.1 0.39 1.3E-05 52.7 2.8 22 342-363 31-52 (381)
447 1g29_1 MALK, maltose transport 85.1 0.42 1.4E-05 52.2 3.1 22 342-363 31-52 (372)
448 3nwj_A ATSK2; P loop, shikimat 85.1 0.44 1.5E-05 49.1 3.1 26 341-366 49-74 (250)
449 2w0m_A SSO2452; RECA, SSPF, un 84.9 0.48 1.6E-05 46.6 3.2 23 341-363 24-46 (235)
450 1v43_A Sugar-binding transport 84.8 0.43 1.5E-05 52.1 3.1 22 342-363 39-60 (372)
451 2f6r_A COA synthase, bifunctio 84.8 0.63 2.2E-05 48.5 4.2 26 339-365 74-99 (281)
452 1ihu_A Arsenical pump-driving 84.7 1.8 6.3E-05 49.7 8.5 42 443-492 199-240 (589)
453 1m7g_A Adenylylsulfate kinase; 84.6 0.64 2.2E-05 45.8 4.0 24 340-363 25-48 (211)
454 2grj_A Dephospho-COA kinase; T 84.6 0.6 2E-05 46.0 3.7 28 339-366 11-38 (192)
455 2x8a_A Nuclear valosin-contain 84.5 0.52 1.8E-05 48.9 3.4 23 342-364 46-68 (274)
456 2npi_A Protein CLP1; CLP1-PCF1 84.4 0.46 1.6E-05 53.4 3.1 23 341-363 139-161 (460)
457 2oze_A ORF delta'; para, walke 84.4 1.8 6.1E-05 44.8 7.4 67 416-492 153-225 (298)
458 3q9l_A Septum site-determining 84.1 0.86 3E-05 45.9 4.8 66 417-492 113-186 (260)
459 3gd7_A Fusion complex of cysti 84.0 0.53 1.8E-05 51.7 3.3 22 342-363 49-70 (390)
460 1u94_A RECA protein, recombina 84.0 1.7 5.7E-05 47.1 7.2 22 341-362 64-85 (356)
461 1cr0_A DNA primase/helicase; R 83.9 0.58 2E-05 48.7 3.4 22 342-363 37-58 (296)
462 4eaq_A DTMP kinase, thymidylat 83.7 0.78 2.7E-05 46.3 4.2 27 339-365 25-51 (229)
463 2zr9_A Protein RECA, recombina 83.6 1.4 4.9E-05 47.4 6.5 22 341-362 62-83 (349)
464 2obl_A ESCN; ATPase, hydrolase 83.4 0.64 2.2E-05 50.2 3.6 23 341-363 72-94 (347)
465 2h92_A Cytidylate kinase; ross 83.4 0.6 2.1E-05 46.0 3.1 26 340-365 3-28 (219)
466 1ixz_A ATP-dependent metallopr 83.3 0.63 2.2E-05 47.1 3.4 23 342-364 51-73 (254)
467 3d31_A Sulfate/molybdate ABC t 83.3 0.38 1.3E-05 52.1 1.7 22 342-363 28-49 (348)
468 1xp8_A RECA protein, recombina 83.1 1.9 6.5E-05 46.8 7.2 21 342-362 76-96 (366)
469 1f2t_A RAD50 ABC-ATPase; DNA d 82.4 0.73 2.5E-05 43.3 3.1 23 342-364 25-47 (149)
470 1oxx_K GLCV, glucose, ABC tran 82.1 0.37 1.3E-05 52.3 1.0 22 342-363 33-54 (353)
471 1yqt_A RNAse L inhibitor; ATP- 82.1 0.63 2.2E-05 53.3 3.1 23 341-363 48-70 (538)
472 2cvh_A DNA repair and recombin 82.0 0.73 2.5E-05 45.0 3.2 22 341-362 21-42 (220)
473 1jbk_A CLPB protein; beta barr 82.0 0.92 3.1E-05 42.5 3.7 24 340-363 43-66 (195)
474 3euj_A Chromosome partition pr 81.9 0.72 2.5E-05 52.1 3.4 24 341-364 30-53 (483)
475 3b60_A Lipid A export ATP-bind 81.6 0.62 2.1E-05 53.7 2.8 23 341-363 370-392 (582)
476 1iy2_A ATP-dependent metallopr 81.4 0.81 2.8E-05 47.1 3.4 23 342-364 75-97 (278)
477 1n0w_A DNA repair protein RAD5 81.4 0.84 2.9E-05 45.3 3.4 22 341-362 25-46 (243)
478 3b5x_A Lipid A export ATP-bind 81.4 0.66 2.3E-05 53.5 3.0 23 341-363 370-392 (582)
479 1ltq_A Polynucleotide kinase; 81.3 0.83 2.8E-05 47.4 3.4 23 341-363 3-25 (301)
480 3qf7_A RAD50; ABC-ATPase, ATPa 81.2 0.77 2.6E-05 49.8 3.2 22 342-363 25-46 (365)
481 3gmt_A Adenylate kinase; ssgci 81.2 0.94 3.2E-05 46.1 3.6 27 339-365 7-33 (230)
482 1in4_A RUVB, holliday junction 80.9 0.84 2.9E-05 48.6 3.4 24 341-364 52-75 (334)
483 2i1q_A DNA repair and recombin 80.7 3.2 0.00011 43.6 7.8 22 341-362 99-120 (322)
484 2dpy_A FLII, flagellum-specifi 80.6 0.92 3.2E-05 50.6 3.6 23 341-363 158-180 (438)
485 1lv7_A FTSH; alpha/beta domain 80.2 1.1 3.9E-05 45.2 4.0 23 341-363 46-68 (257)
486 2xj4_A MIPZ; replication, cell 80.2 3.7 0.00013 42.4 7.9 35 417-453 103-137 (286)
487 1svm_A Large T antigen; AAA+ f 80.0 1.1 3.9E-05 48.9 4.0 24 341-364 170-193 (377)
488 3ozx_A RNAse L inhibitor; ATP 79.9 0.72 2.5E-05 52.8 2.5 23 341-363 26-48 (538)
489 3j16_B RLI1P; ribosome recycli 79.9 0.83 2.8E-05 53.1 3.1 23 341-363 104-126 (608)
490 1xwi_A SKD1 protein; VPS4B, AA 79.8 11 0.00037 39.7 11.6 25 339-363 44-68 (322)
491 1a7j_A Phosphoribulokinase; tr 79.6 0.61 2.1E-05 49.0 1.6 26 340-365 5-30 (290)
492 4b4t_L 26S protease subunit RP 79.5 4.9 0.00017 44.7 9.1 26 339-364 214-239 (437)
493 3exa_A TRNA delta(2)-isopenten 79.4 1.2 4.2E-05 47.5 4.0 26 340-365 3-28 (322)
494 3qf4_B Uncharacterized ABC tra 79.2 0.65 2.2E-05 53.8 1.9 23 341-363 382-404 (598)
495 1yqt_A RNAse L inhibitor; ATP- 79.1 0.91 3.1E-05 51.9 3.1 23 341-363 313-335 (538)
496 2yl4_A ATP-binding cassette SU 79.1 0.63 2.2E-05 53.8 1.8 23 341-363 371-393 (595)
497 2w58_A DNAI, primosome compone 78.9 1.2 4.3E-05 43.0 3.6 23 341-363 55-77 (202)
498 3ez9_A Para; DNA binding, wing 78.9 1.8 6.1E-05 47.3 5.2 73 416-491 246-322 (403)
499 3bk7_A ABC transporter ATP-bin 78.6 0.83 2.8E-05 53.1 2.5 21 342-362 119-139 (607)
500 2ocp_A DGK, deoxyguanosine kin 78.5 1.3 4.6E-05 44.4 3.8 25 340-364 2-26 (241)
No 1
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=100.00 E-value=1.3e-74 Score=652.89 Aligned_cols=423 Identities=35% Similarity=0.670 Sum_probs=401.1
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeC
Q 004209 337 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 416 (768)
Q Consensus 337 ~~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~ 416 (768)
.+..++|+++||+|+|||||+++|++..+.+..+.+.++++++...|+++|.++|.+|..++|+++|+|++.....|.++
T Consensus 14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~ 93 (439)
T 3j2k_7 14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE 93 (439)
T ss_pred CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccc--ccc
Q 004209 417 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDA--VQY 494 (768)
Q Consensus 417 ~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDl--v~~ 494 (768)
++.++|||||||++|.++|+.++..+|++||||||+.|.++++|+. .+|+++|+.++..+++|++|||+||||+ .+|
T Consensus 94 ~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~-~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~~ 172 (439)
T 3j2k_7 94 KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEK-GGQTREHAMLAKTAGVKHLIVLINKMDDPTVNW 172 (439)
T ss_pred CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCC-CchHHHHHHHHHHcCCCeEEEEeecCCCcccch
Confidence 9999999999999999999999999999999999999998888875 4799999999999999989999999999 456
Q ss_pred chhhHHHHHHHHhHHHhhcCCCCC-CCcEEEeecccCCCcccCCCCcccccccCCcchhhhhhccCCCCCCCCCCceeee
Q 004209 495 SKDRFDSIKVQLGTFLRSCGFKDA-SLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPPPREFSKPLLMPI 573 (768)
Q Consensus 495 s~e~~~~i~~el~~~lk~~g~~~~-~i~~IpVSA~tG~gI~e~~~~~~~~~wy~G~~LLe~L~~l~~~~~~~~~plr~~I 573 (768)
++++++++.+++..+++.+++.+. .++++|+||++|+|+.++.. .++||+|++|++.|+.++++.+..+.|++|+|
T Consensus 173 ~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~---~~~w~~g~~L~~~l~~i~~~~~~~~~p~r~~v 249 (439)
T 3j2k_7 173 SNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD---FCPWYIGLPFIPYLDNLPNFNRSVDGPIRLPI 249 (439)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc---cccccCchHHHHHHHhCCCCccCCCCCeEEEE
Confidence 788899999999999999998643 57899999999999988653 48999999999999999988888899999999
Q ss_pred EeEEeeCCCcEEEEEEEecCcccCCCEEEEccCCeeeEEEeeeecccccceeccCCceEEEecccccccccCCcccccCC
Q 004209 574 CDVLKSQHGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGGVLCHPD 653 (768)
Q Consensus 574 ~dv~~~~~G~V~v~G~V~sG~L~~Gd~v~i~P~~~~~~VksI~~~~~~v~~A~aGd~V~l~L~gi~~~~i~rG~VL~~~~ 653 (768)
+++|+ ..|+| ++|+|++|+|++||+|.++|++..++|++|++++.++++|.|||+|+|+|+|++..+|+|||||++++
T Consensus 250 ~~~~~-~~G~v-~~G~v~~G~l~~Gd~v~~~p~~~~~~V~~i~~~~~~~~~a~aG~~v~~~l~gi~~~~i~rG~vl~~~~ 327 (439)
T 3j2k_7 250 VDKYK-DMGTV-VLGKLESGSIFKGQQLVMMPNKHNVEVLGILSDDTETDFVAPGENLKIRLKGIEEEEILPGFILCDPS 327 (439)
T ss_pred EEEEc-CCCeE-EEEEEEeeEEecCCEEEEccCCceEEEEEEEECCeEcCEecCCCcceEEEeccchhhcCCcEEecCCC
Confidence 99987 37998 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceeeEEEEEEEeeCCCCCccCCCeeEEEEeeeeEEEEEEEEEeecccccCcccccCCcccCCCCeEEEEEEeCceEE
Q 004209 654 FPVAIATHLELKVLVLDFAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVALQEPVC 733 (768)
Q Consensus 654 ~p~~~~~~F~a~i~vl~~~~pI~~G~~~~lhig~~~~~a~I~~I~~~lD~~tg~~~k~~p~~L~~gd~a~v~l~l~~pI~ 733 (768)
.+++.++.|+|++.||+++.+|.+||++.+|+|+.+++|+|.+|.+++|.+||+..+.+|++|+.|+.+.|+|++.+|+|
T Consensus 328 ~~~~~~~~f~a~v~~l~~~~~i~~g~~~~~~~~t~~~~~~i~~i~~~~d~~t~~~~~~~~~~l~~~~~~~v~~~~~~p~~ 407 (439)
T 3j2k_7 328 NLCHSGRTFDVQIVIIEHKSIICPGYNAVLHIHTCIEEVEITALISLVDKKSGEKSKTRPRFVKQDQVCIARLRTAGTIC 407 (439)
T ss_pred CCCceeeEEEEEEEEeCCCCcCCCCCEEEEEEeceEEEEEEEEEEEeecCCchhhhccCcceecCCcEEEEEEEeCCeEE
Confidence 98888999999999999988999999999999999999999999999999999988889999999999999999999999
Q ss_pred eecccccCCcceEEEEeCCcEEEEEEEEeecc
Q 004209 734 VEEFSNCRALGRAFLRSSGRTIAVGIVTRIIE 765 (768)
Q Consensus 734 ~e~~~~~~~lGRfILR~~g~TvgvG~V~~v~~ 765 (768)
+++|++++.+|||+||++|+|||+|+|++|++
T Consensus 408 ~e~~~~~~~~g~f~l~d~~~tv~~G~i~~v~~ 439 (439)
T 3j2k_7 408 LETFKDFPQMGRFTLRDEGKTIAIGKVLKLVQ 439 (439)
T ss_pred EeeccccccCCCEEEEECCceEEEEEEEEecC
Confidence 99999999999999999999999999999874
No 2
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=100.00 E-value=2.3e-70 Score=621.26 Aligned_cols=424 Identities=37% Similarity=0.670 Sum_probs=396.6
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC
Q 004209 338 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 417 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~ 417 (768)
+..++|+++||+|+|||||+++|++..+.+..+.+.++++.+.+.|+++|.|++++|...+|+++|+|++..+..|.+.+
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~ 84 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC
Confidence 35689999999999999999999999889999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccchh
Q 004209 418 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 497 (768)
Q Consensus 418 ~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~e 497 (768)
+.++|||||||++|.++++.++..+|++||||||+++.++++|+. ..|+++|+.++..+++|++|||+||||+++|+++
T Consensus 85 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~-~~qt~~~~~~~~~~~v~~iivviNK~Dl~~~~~~ 163 (458)
T 1f60_A 85 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISK-DGQTREHALLAFTLGVRQLIVAVNKMDSVKWDES 163 (458)
T ss_dssp EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCT-TSHHHHHHHHHHHTTCCEEEEEEECGGGGTTCHH
T ss_pred ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCc-chhHHHHHHHHHHcCCCeEEEEEEccccccCCHH
Confidence 999999999999999999999999999999999998876666654 4599999999999999889999999999987788
Q ss_pred hHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCcccCCCCcccccccC------------CcchhhhhhccCCCCCCC
Q 004209 498 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYK------------GPCLLDAIDSLRPPPREF 565 (768)
Q Consensus 498 ~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e~~~~~~~~~wy~------------G~~LLe~L~~l~~~~~~~ 565 (768)
+++.+.+++..+++.+++....++++|+||++|+|+.+... .++||+ |.+|+++|+.+++|.+..
T Consensus 164 ~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~~~---~~~~~~~~~~~~~tg~~~~~~Ll~~l~~~~~p~~~~ 240 (458)
T 1f60_A 164 RFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEATT---NAPWYKGWEKETKAGVVKGKTLLEAIDAIEQPSRPT 240 (458)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBCCS---SCTTCCCEEEECSSSEEEESSHHHHHHTSCCCCCCT
T ss_pred HHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccccc---cCchhhcccccccccccchHHHHHHhhccCCCcccC
Confidence 89999999999999988865457899999999999987543 379997 568999999998888888
Q ss_pred CCCceeeeEeEEeeC-CCcEEEEEEEecCcccCCCEEEEccCCeeeEEEeeeecccccceeccCCceEEEeccccccccc
Q 004209 566 SKPLLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVM 644 (768)
Q Consensus 566 ~~plr~~I~dv~~~~-~G~V~v~G~V~sG~L~~Gd~v~i~P~~~~~~VksI~~~~~~v~~A~aGd~V~l~L~gi~~~~i~ 644 (768)
+.|++|+|+++|+++ .|+| ++|+|++|.|++||+|.++|.+..++|++|++++.+++.|.|||+|+|.|+|++..+++
T Consensus 241 ~~p~r~~i~~v~~~~g~G~v-~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~~a~aG~~v~i~l~gi~~~~i~ 319 (458)
T 1f60_A 241 DKPLRLPLQDVYKIGGIGTV-PVGRVETGVIKPGMVVTFAPAGVTTEVKSVEMHHEQLEQGVPGDNVGFNVKNVSVKEIR 319 (458)
T ss_dssp TSCCEEEEEEEEEETTTEEE-EEEECCBSCBCTTCEEEEETTTEEEEEEEEEETTEECSCBCTTCEEEEEESSCCTTTSC
T ss_pred CCCcEEEEEEEEEeCCCcEE-EEEEEeCCeEcCCCEEEECCCCceEEEeEEEECCeEEEEEcCCCEEEEEEcCCcccccC
Confidence 999999999999999 9998 89999999999999999999999999999999999999999999999999999889999
Q ss_pred CCcccccCCC-CcceeeEEEEEEEeeCCCCCccCCCeeEEEEeeeeEEEEEEEEEeecccccCcccccCCcccCCCCeEE
Q 004209 645 SGGVLCHPDF-PVAIATHLELKVLVLDFAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAI 723 (768)
Q Consensus 645 rG~VL~~~~~-p~~~~~~F~a~i~vl~~~~pI~~G~~~~lhig~~~~~a~I~~I~~~lD~~tg~~~k~~p~~L~~gd~a~ 723 (768)
+|+||++++. |+..++.|+|++.||+++.||..||+++||+|+.+++|+|..|.+.+|.+||+..+++|++|++|+.+.
T Consensus 320 rG~vl~~~~~~~~~~~~~f~a~v~~l~~~~~i~~g~~~~~~~~t~~~~~~i~~l~~~~d~~t~~~~~~~~~~l~~g~~~~ 399 (458)
T 1f60_A 320 RGNVCGDAKNDPPKGCASFNATVIVLNHPGQISAGYSPVLDCHTAHIACRFDELLEKNDRRSGKKLEDHPKFLKSGDAAL 399 (458)
T ss_dssp TTCEEEETTSSCCCCCSEEEEEEEECSCSCCBCTTCCCEEEETTEEEEEEEEEEEEEECTTTCCEEEESCSCBCTTCEEE
T ss_pred ceeEEecCCCCCCceeeEEEEEEEEeCCCCCCCCCCEEEEEeccceEEEEEEEEEeEecCccccccccCccccCCCCEEE
Confidence 9999999875 788899999999999989999999999999999999999999999999999998888999999999999
Q ss_pred EEEEeCceEEeecccccCCcceEEEEeCCcEEEEEEEEeeccc
Q 004209 724 VEVALQEPVCVEEFSNCRALGRAFLRSSGRTIAVGIVTRIIED 766 (768)
Q Consensus 724 v~l~l~~pI~~e~~~~~~~lGRfILR~~g~TvgvG~V~~v~~~ 766 (768)
|+|+|.+|+|+++|.+++.+|||+||+.|+|||+|+|+++.+.
T Consensus 400 v~~~~~~p~~~~~~~~~~~~grf~lr~~~~tv~~G~v~~~~~~ 442 (458)
T 1f60_A 400 VKFVPSKPMCVEAFSEYPPLGRFAVRDMRQTVAVGVIKSVDKT 442 (458)
T ss_dssp EEEEESSCCCCCCTTTCGGGSEEEEEETTEEEEEEEEEEEEC-
T ss_pred EEEEECCeEEEecCccCCCCCcEEEEECCeEEEEEEEEeeccc
Confidence 9999999999999999999999999999999999999998764
No 3
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=100.00 E-value=4.9e-70 Score=622.48 Aligned_cols=425 Identities=33% Similarity=0.611 Sum_probs=365.4
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC
Q 004209 338 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 417 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~ 417 (768)
+..++|+++|++|+|||||+++|++..+.+..+.+.++++.+...|+++|.++|++|....|+++|+|++.....+.+.+
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 110 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 110 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccchh
Q 004209 418 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 497 (768)
Q Consensus 418 ~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~e 497 (768)
+.++|||||||++|..++..++..+|++||||||+.+.++.+++. ..|+++|+.++..++++++|||+||||+++++++
T Consensus 111 ~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~-~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~~~~ 189 (483)
T 3p26_A 111 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDL-DGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQ 189 (483)
T ss_dssp CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCC-CHHHHHHHHHHHHTTCCCEEEEEECGGGGTTCHH
T ss_pred ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccch-hhhHHHHHHHHHHcCCCcEEEEEECcCcccchHH
Confidence 999999999999999999999999999999999999988877753 5799999999999998889999999999988889
Q ss_pred hHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCcccCCCCcccccccCCcchhhhhhcc----CC--CCCCCCCCcee
Q 004209 498 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSL----RP--PPREFSKPLLM 571 (768)
Q Consensus 498 ~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e~~~~~~~~~wy~G~~LLe~L~~l----~~--~~~~~~~plr~ 571 (768)
+++++.+++..+++.+++....++|+++||++|+|+.++......++||+|++|++.|+.+ +. +.+..+.|++|
T Consensus 190 ~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el~~~~~~~~wy~g~~L~~~L~~i~~~~~~~~p~~~~~~p~r~ 269 (483)
T 3p26_A 190 RFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDPFLF 269 (483)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSSCCCHHHHHHCCSCCHHHHHHHHHHHHHHHHTTCCSSSCCEE
T ss_pred HHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccccCcccccccccCCCCHHHHHHHHHhhcccccccccCCCceEE
Confidence 9999999999999999987667899999999999998865443347999999999999776 22 45567899999
Q ss_pred eeEeEEeeC----CCcEEEEEEEecCcccCCCEEEEccCCeeeEEEeeeecc--------cccceeccCCceEEEecccc
Q 004209 572 PICDVLKSQ----HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERDS--------QSCSVARAGDNIAVSLQGID 639 (768)
Q Consensus 572 ~I~dv~~~~----~G~V~v~G~V~sG~L~~Gd~v~i~P~~~~~~VksI~~~~--------~~v~~A~aGd~V~l~L~gi~ 639 (768)
+|+++|++. .|+| ++|+|++|+|++||+|.++|++..++|++|++++ .++++|.|||+|+|.|++++
T Consensus 270 ~v~~v~~~~~~~g~g~v-~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~~~~~~~~~~a~aG~~v~~~l~~~~ 348 (483)
T 3p26_A 270 SVLEIIPSKKTSNDLAL-VSGKLESGSIQPGESLTIYPSEQSCIVDKIQVGSQQGQSTNHEETDVAIKGDFVTLKLRKAY 348 (483)
T ss_dssp EEEEEEC---CCSCCEE-EEEEEEESEECTTCEEEEETTTEEEEEEEEEETTTC-----CCEESCEETTCEEEEEEESCC
T ss_pred EEEEEEccCCcCCCceE-EEEEEecceEccCCEEEEeCCCCeEEEEEEEEcCccccccccccccEECCCCEEEEEEEecc
Confidence 999999975 5777 8999999999999999999999999999999984 89999999999999999999
Q ss_pred cccccCCcccccCCC-CcceeeEEEEEEEeeCCCCCccCCCeeEEEEeeeeEEEEEEEEEeecccccCcccccCCcccCC
Q 004209 640 VSRVMSGGVLCHPDF-PVAIATHLELKVLVLDFAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTA 718 (768)
Q Consensus 640 ~~~i~rG~VL~~~~~-p~~~~~~F~a~i~vl~~~~pI~~G~~~~lhig~~~~~a~I~~I~~~lD~~tg~~~k~~p~~L~~ 718 (768)
..++++||||++++. |+..++.|+|++.||+++.||.+|+++.||+|+.+++|+|.+|.+++|.+|++. +++|++|++
T Consensus 349 ~~di~rG~vl~~~~~~~~~~~~~f~a~v~~l~~~~~l~~g~~~~l~~~t~~~~~~v~~i~~~~d~~~~~~-~~~~~~l~~ 427 (483)
T 3p26_A 349 PEDIQNGDLAASVDYSSIHSAQCFVLELTTFDMNRPLLPGTPFILFIGVKEQPARIKRLISFIDKGNTAS-KKKIRHLGS 427 (483)
T ss_dssp GGGCCTTCEEECTTCCCCEECSEEEEEEEECSCSSCBCTTCEEEEEETTEEEEEEEEEEEEEEEETTEEC-CSCCSCBCS
T ss_pred cccCCceEEEEcCCCCCCceeeEEEEEEEEECCCCCCCCCCEEEEEeCceEEEEEEEEEEEEEcCCCccc-ccCccCcCC
Confidence 999999999999988 888999999999999989999999999999999999999999999999999876 678999999
Q ss_pred CCeEEEEEEe---CceEEeecccccCCcceEEEEeCCcEEEEEEEEeecc
Q 004209 719 KQSAIVEVAL---QEPVCVEEFSNCRALGRAFLRSSGRTIAVGIVTRIIE 765 (768)
Q Consensus 719 gd~a~v~l~l---~~pI~~e~~~~~~~lGRfILR~~g~TvgvG~V~~v~~ 765 (768)
||.|.|+|++ .+|+|++.|.+++.+|||+||++|+|||+|+|+.+..
T Consensus 428 ~~~~~v~~~~~~~~~p~~~~~~~~~~~~G~f~l~~~~~tv~~G~i~~~~~ 477 (483)
T 3p26_A 428 KQRAFVEIELIEVKRWIPLLTAHENDRLGRVVLRKDGRTIAAGKISEITQ 477 (483)
T ss_dssp SCEEEEEEEECSCSSCCEECCTTTCTTTTEEEEEETTEEEEEEEEEEECC
T ss_pred CCEEEEEEEECCCCCcEEEEecccCccCCCEEEEeCCCEEEEEEEEEecc
Confidence 9999999999 8899999999999999999999999999999998753
No 4
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=100.00 E-value=2.2e-69 Score=609.43 Aligned_cols=424 Identities=39% Similarity=0.702 Sum_probs=386.4
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC
Q 004209 338 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 417 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~ 417 (768)
+..++|+++||+|+|||||+++|++..+.+....+.+++..+...|++++.|+|.+|...+|+++|+|++.....+.+.+
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~ 83 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 83 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence 45689999999999999999999999889999888899999999999999999999999999999999999999999999
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccc--cc
Q 004209 418 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ--YS 495 (768)
Q Consensus 418 ~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~--~s 495 (768)
+.++|||||||++|..++..++..+|++||||||+++.|+..+. ++.|+++|+.++..++++++|||+||||+.+ |+
T Consensus 84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~-~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~ 162 (435)
T 1jny_A 84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMS-VEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYD 162 (435)
T ss_dssp CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHS-TTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTC
T ss_pred eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCccccccc-cchHHHHHHHHHHHcCCCeEEEEEEcccCCCcccc
Confidence 99999999999999999999999999999999999987776554 4679999999999999987899999999987 66
Q ss_pred hhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCcccCCCCcccccccCCcchhhhhhccCCCCCCCCCCceeeeEe
Q 004209 496 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPPPREFSKPLLMPICD 575 (768)
Q Consensus 496 ~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e~~~~~~~~~wy~G~~LLe~L~~l~~~~~~~~~plr~~I~d 575 (768)
+++++.+.+++..+++.+++....++++|+||++|+|+.+.... ++||+|.+|+++|+.+++|.+..+.|++|+|++
T Consensus 163 ~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~~---~~~~~g~~Ll~~l~~~~~p~~~~~~~~~~~v~~ 239 (435)
T 1jny_A 163 EKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSEN---MKWYNGPTLEEYLDQLELPPKPVDKPLRIPIQD 239 (435)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCSS---CTTCCSCCHHHHHTTCCCCCCGGGSCCBEEEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccccccc---cccccchhHHHHHhccCCCCCCCCCCeEEEEEE
Confidence 78889999999999999988765689999999999999876543 699999999999998888877778999999999
Q ss_pred EEeeC-CCcEEEEEEEecCcccCCCEEEEccCCeeeEEEeeeecccccceeccCCceEEEecccccccccCCcccccCCC
Q 004209 576 VLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGGVLCHPDF 654 (768)
Q Consensus 576 v~~~~-~G~V~v~G~V~sG~L~~Gd~v~i~P~~~~~~VksI~~~~~~v~~A~aGd~V~l~L~gi~~~~i~rG~VL~~~~~ 654 (768)
+|+++ .|++ ++|+|.+|+|++||.|.++|.+...+|++|++++.++++|.|||+|+|.|+|++..++++||+|++++.
T Consensus 240 v~~~~~~G~v-~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~~a~aG~~v~~~l~g~~~~~i~~Gd~l~~~~~ 318 (435)
T 1jny_A 240 VYSISGVGTV-PVGRVESGVLKVGDKIVFMPAGKVGEVRSIETHHTKMDKAEPGDNIGFNVRGVEKKDIKRGDVVGHPNN 318 (435)
T ss_dssp EEEETTTEEE-EEEECCBSCEETTCEEEEETTTEEEEEEEEEETTEEESEECTTCEEEEEEESSCGGGCCTTCEEECTTS
T ss_pred EEEeCCCcEE-EEEEEecCeEEcCCEEEECCceeEEEEEEEEECCcEEeEEcCCCEEEEEEecCCHHHcCCccEecCCCC
Confidence 99998 9998 899999999999999999999999999999999999999999999999999999899999999999988
Q ss_pred CcceeeEEEEEEEeeCCCCCccCCCeeEEEEeeeeEEEEEEEEEeecccccCcccccCCcccCCCCeEEEEEEeCceEEe
Q 004209 655 PVAIATHLELKVLVLDFAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVALQEPVCV 734 (768)
Q Consensus 655 p~~~~~~F~a~i~vl~~~~pI~~G~~~~lhig~~~~~a~I~~I~~~lD~~tg~~~k~~p~~L~~gd~a~v~l~l~~pI~~ 734 (768)
++..+..|+|++.||+++.||.+|++++||+|+.+++|+|..|.+.+|.+|++..+++|.+|++|+.+.|+|+|.+|+|+
T Consensus 319 ~~~~~~~f~a~v~~l~~~~~l~~g~~~~~~~~t~~~~~~i~~~~~~~d~~~~~~~~~~~~~l~~g~~~~v~~~~~~p~~~ 398 (435)
T 1jny_A 319 PPTVADEFTARIIVVWHPTALANGYTPVLHVHTASVACRVSELVSKLDPRTGQEAEKNPQFLKQGDVAIVKFKPIKPLCV 398 (435)
T ss_dssp CCCEESEEEEEEEECCCSSCBCTTCCCEEEETTEEEEEEEEEEEEEECTTTCSEEEESCSCBCTTCEEEEEEEESSCEEC
T ss_pred CceEeEEEEEEEEEECCCCcCCCCCEEEEEeCCcEEEEEEEEEeeeeccCcccccccCccccCCCCEEEEEEEECceEEE
Confidence 88889999999999998899999999999999999999999999999999999888899999999999999999999999
Q ss_pred ecccccCCcceEEEEeCCcEEEEEEEEeeccc
Q 004209 735 EEFSNCRALGRAFLRSSGRTIAVGIVTRIIED 766 (768)
Q Consensus 735 e~~~~~~~lGRfILR~~g~TvgvG~V~~v~~~ 766 (768)
++|.+++.+|||+||+.|+|||+|+|+++.+.
T Consensus 399 ~~~~~~~~~grf~lr~~~~tv~~G~i~~~~~~ 430 (435)
T 1jny_A 399 EKYNEFPPLGRFAMRDMGKTVGVGIIVDVKPA 430 (435)
T ss_dssp CCTTTSGGGTEEEEEETTEEEEEEEEEEEEC-
T ss_pred ecCCcCCcCccEEEEECCeEEEEEEEeeecCc
Confidence 99999999999999999999999999998764
No 5
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-69 Score=633.29 Aligned_cols=425 Identities=33% Similarity=0.607 Sum_probs=396.4
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeC
Q 004209 337 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 416 (768)
Q Consensus 337 ~~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~ 416 (768)
.++.++|+++|++|+|||||+++|++..+.+..+.+.++++.+...|+++|.++|++|....|+.+|+|++.....+.+.
T Consensus 164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~ 243 (611)
T 3izq_1 164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 243 (611)
T ss_dssp CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccch
Q 004209 417 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 496 (768)
Q Consensus 417 ~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~ 496 (768)
++.++|||||||++|..+++.++..+|++||||||+.|.|+.+|.. ..|+++|+.++..++++++|||+||||++++++
T Consensus 244 ~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~-~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~ 322 (611)
T 3izq_1 244 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDL-DGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQ 322 (611)
T ss_dssp SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCT-TSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCH
T ss_pred CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchh-hhHHHHHHHHHHHcCCCeEEEEEecccccchhH
Confidence 9999999999999999999999999999999999999888887764 579999999999999998999999999998888
Q ss_pred hhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCcccCCCCcccccccCCcchhhhhhccC--C----CCCCCCCCce
Q 004209 497 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLR--P----PPREFSKPLL 570 (768)
Q Consensus 497 e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e~~~~~~~~~wy~G~~LLe~L~~l~--~----~~~~~~~plr 570 (768)
.+++++..++..+++.+++....+++||+||++|.|+.++......++||+|++|++.|+.+. . |.+..+.|++
T Consensus 323 ~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el~~~~~~~~Wy~g~~L~~~L~~l~~~~p~~~p~~~~~~p~r 402 (611)
T 3izq_1 323 QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDPFL 402 (611)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSCTTSCTTCCSCCSCCHHHHHTTSCCCCCCSSSCCSCCSCCE
T ss_pred HHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCccccCccccccccccCCcHHHHHHHHhhcccccCcccccccchh
Confidence 899999999999999999876678999999999999988654444589999999999998772 2 3355688999
Q ss_pred eeeEeEEeeC----CCcEEEEEEEecCcccCCCEEEEccCCeeeEEEeeeecc--------cccceeccCCceEEEeccc
Q 004209 571 MPICDVLKSQ----HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERDS--------QSCSVARAGDNIAVSLQGI 638 (768)
Q Consensus 571 ~~I~dv~~~~----~G~V~v~G~V~sG~L~~Gd~v~i~P~~~~~~VksI~~~~--------~~v~~A~aGd~V~l~L~gi 638 (768)
|+|+++|+++ .|+| ++|+|.+|+|++||.|.++|.+..++|++|++++ .++++|.|||+|+|+|+++
T Consensus 403 ~~V~~v~~~~~~~g~g~v-~~G~V~~G~lk~Gd~v~~~p~~~~~~VksI~~~~~~~~~~~~~~v~~A~aGd~v~l~l~~~ 481 (611)
T 3izq_1 403 FSVLEIIPSKKTSNDLAL-VSGKLESGSIQPGESLTIYPSEQSCIVDKIQVGSQQGQSTNHEETDVAIKGDFVTLKLRKA 481 (611)
T ss_dssp EECCEEECCSSSCSSSSE-EEEEEEESEECTTCEEEETTTTEEEEEEEEECSSCCSCSSSCCCCCCEETTCEEEEEESSC
T ss_pred hheeeeeccCccCCCeeE-EEEEEEeceeccCCEEEEecCCceEEEEEEEEcccccccccccccceecCCCcceEEeeec
Confidence 9999999975 5788 8999999999999999999999999999999984 8999999999999999999
Q ss_pred ccccccCCcccccCCC-CcceeeEEEEEEEeeCCCCCccCCCeeEEEEeeeeEEEEEEEEEeecccccCcccccCCcccC
Q 004209 639 DVSRVMSGGVLCHPDF-PVAIATHLELKVLVLDFAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLT 717 (768)
Q Consensus 639 ~~~~i~rG~VL~~~~~-p~~~~~~F~a~i~vl~~~~pI~~G~~~~lhig~~~~~a~I~~I~~~lD~~tg~~~k~~p~~L~ 717 (768)
+..++++|+||++++. |+..++.|+|++.||+++.||.+|++++||+|+.+++|+|..|.+++|.+||+. +++|++|+
T Consensus 482 ~~~di~rGdvl~~~~~~~~~~~~~f~a~v~~l~~~~~l~~g~~~~l~~~t~~~~~~v~~l~~~~d~~t~~~-~~~~~~l~ 560 (611)
T 3izq_1 482 YPEDIQNGDLAASVDYSSIHSAQCFVLELTTFDMNRPLLPGTPFILFIGVKEQPARIKRLISFIDKGNTAS-KKKIRHLG 560 (611)
T ss_dssp CTTSCCTTCEEBCSTTCSCCCBSCEEEEEEECSCSSCBCTTEEEEEESSSCEEEEEEEEEEESSSSCCCBC-TTCSCSSS
T ss_pred cHhhCcceEEccCCCCCCCceeeEEEEEEEEECCCCCCCCCCEEEEEECCeEeeEEeeeeeeeeccccccc-ccCccccC
Confidence 9999999999999988 888899999999999989999999999999999999999999999999999986 67899999
Q ss_pred CCCeEEEEEEe---CceEEeecccccCCcceEEEEeCCcEEEEEEEEeec
Q 004209 718 AKQSAIVEVAL---QEPVCVEEFSNCRALGRAFLRSSGRTIAVGIVTRII 764 (768)
Q Consensus 718 ~gd~a~v~l~l---~~pI~~e~~~~~~~lGRfILR~~g~TvgvG~V~~v~ 764 (768)
+|+.|.|+|+| .+|+|++.|.+++.+|||+||++|+|||+|+|++|.
T Consensus 561 ~~d~a~v~~~~~~~~~pi~~e~~~~~~~~grf~lr~~~~Tva~G~i~~v~ 610 (611)
T 3izq_1 561 SKQRAFVEIELIEVKRWIPLLTAHENDRLGRVVLRKDGRTIAAGKISEIT 610 (611)
T ss_dssp SCCSEEEEEEESSCSSCBCCCCTTTCHHHHEEEEESSSSEEEEEEEEEEC
T ss_pred CCCEEEEEEEECCCCCceEEeecccCCCCCcEEEEeCCCEEEEEEEEEec
Confidence 99999999999 789999999999999999999999999999999975
No 6
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=100.00 E-value=2.1e-70 Score=622.98 Aligned_cols=422 Identities=38% Similarity=0.667 Sum_probs=354.6
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC
Q 004209 338 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 417 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~ 417 (768)
+..++|+++||+|+|||||+++|++..+.+..+.+.++++++...|+.++.++|.+|..++|+++|+|++.++..|.+++
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~ 120 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 120 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence 45789999999999999999999999999999889999999999999999999999999999999999999999999999
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEeccccc--ccc
Q 004209 418 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV--QYS 495 (768)
Q Consensus 418 ~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv--~~s 495 (768)
+.++|||||||++|.++|+.++..+|++||||||+.|.++.+|+. ..|+++|+.++..+++|++|||+||||+. +|+
T Consensus 121 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~-~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~ 199 (467)
T 1r5b_A 121 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFER-GGQTREHAVLARTQGINHLVVVINKMDEPSVQWS 199 (467)
T ss_dssp EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTST-TCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSC
T ss_pred eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCC-CCcHHHHHHHHHHcCCCEEEEEEECccCCCcccc
Confidence 999999999999999999999999999999999999988888875 47999999999999998899999999994 467
Q ss_pred hhhHHHHHHHHhHHHhhc-CCC-CCCCcEEEeecccCCCcccCCCCcccccccCCcchhhhhhccCCCCCCCCCCceeee
Q 004209 496 KDRFDSIKVQLGTFLRSC-GFK-DASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPPPREFSKPLLMPI 573 (768)
Q Consensus 496 ~e~~~~i~~el~~~lk~~-g~~-~~~i~~IpVSA~tG~gI~e~~~~~~~~~wy~G~~LLe~L~~l~~~~~~~~~plr~~I 573 (768)
+++++.+..++..+++.+ ++. ...++++|+||++|.|+.+... ...++||+|++|++.|+.++++.+..+.||+|+|
T Consensus 200 ~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~~-~~~~~w~~g~~L~~~l~~i~~~~~~~~~p~~~~v 278 (467)
T 1r5b_A 200 EERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD-SSVCPWYQGPSLLEYLDSMTHLERKVNAPFIMPI 278 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC-TTTCSSCCSCCHHHHHHHCCCCHHHHTSCCEEEC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccCCceEEecccccccccccccc-cccCccccchhHHHHHHhCCCCcCCCCCCcEEEE
Confidence 788999999999999888 875 2257899999999999987653 2468999999999999999888777789999999
Q ss_pred EeEEeeCCCcEEEEEEEecCcccCCCEEEEccCCeeeEEEeeeec-ccccceeccCCceEEEecccccccccCCcccccC
Q 004209 574 CDVLKSQHGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERD-SQSCSVARAGDNIAVSLQGIDVSRVMSGGVLCHP 652 (768)
Q Consensus 574 ~dv~~~~~G~V~v~G~V~sG~L~~Gd~v~i~P~~~~~~VksI~~~-~~~v~~A~aGd~V~l~L~gi~~~~i~rG~VL~~~ 652 (768)
+++|+. .|+| ++|+|.+|+|++||.|.++|.+..++|++|+++ +.++++|.|||+|+|.|+| +..++++||||+++
T Consensus 279 ~~~~~~-~G~v-~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~~~a~aG~~v~i~l~g-~~~~i~rG~vl~~~ 355 (467)
T 1r5b_A 279 ASKYKD-LGTI-LEGKIEAGSIKKNSNVLVMPINQTLEVTAIYDEADEEISSSICGDQVRLRVRG-DDSDVQTGYVLTST 355 (467)
T ss_dssp CEEEES-SSEE-EEEECCBSEEETTEEEEEETTTEEEEEEEEECTTCCEESEEETTCEEEEEEES-CCTTCCTTCEEECS
T ss_pred EEEEeC-CCeE-EEEEEeeeEEeeCCEEEEccCCeeEEEEEEeccCCcEeeEEcCCCEEEEEEec-cHhhCCceEEEeCC
Confidence 999875 7988 899999999999999999999999999999998 8999999999999999999 88999999999999
Q ss_pred CCCcceeeEEEEEEEeeCCCCCccCCCeeEEEEeeeeEEEEEEEEEeecccccCcccccCCcccCCCCeEEEEEEeCceE
Q 004209 653 DFPVAIATHLELKVLVLDFAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVALQEPV 732 (768)
Q Consensus 653 ~~p~~~~~~F~a~i~vl~~~~pI~~G~~~~lhig~~~~~a~I~~I~~~lD~~tg~~~k~~p~~L~~gd~a~v~l~l~~pI 732 (768)
+.++..++.|+|++.||+++.+|..|+++.||+|+.+++|+|..|...+|. +|+..+++|++|++|+.+.|+|+|.+|+
T Consensus 356 ~~~~~~~~~f~a~v~~l~~~~~~~~g~~~~~~~~t~~~~~~~~~i~~~~d~-~~~~~~~~~~~l~~g~~~~v~l~~~~p~ 434 (467)
T 1r5b_A 356 KNPVHATTRFIAQIAILELPSILTTGYSCVMHIHTAVEEVSFAKLLHKLDK-TNRKSKKPPMFATKGMKIIAELETQTPV 434 (467)
T ss_dssp SSCCCEEEEEEEEEEECSSCCCBSSCCCBEEESSSCCCCBEESSCCCCCCS-SCCCCSSCCSBCCTTCBCCEEEEEEEEE
T ss_pred CCCCccceEEEEEEEEeCCCCccCCCCEEEEEEeCCEEEEEEEEEEEEecC-CccccccCccccCCCCEEEEEEEECcEE
Confidence 888899999999999999989999999999999999999999999999997 8888888899999999999999999999
Q ss_pred EeecccccCCcceEEEEeCCcEEEEEEEEeecc
Q 004209 733 CVEEFSNCRALGRAFLRSSGRTIAVGIVTRIIE 765 (768)
Q Consensus 733 ~~e~~~~~~~lGRfILR~~g~TvgvG~V~~v~~ 765 (768)
|+++|.+++.||||+||+.|+|||+|+|++|.+
T Consensus 435 ~~~~~~~~~~~grf~lrd~~~Tv~~G~i~~~~~ 467 (467)
T 1r5b_A 435 CMERFEDYQYMGRFTLRDQGTTVAVGKVVKILD 467 (467)
T ss_dssp ECCCTTTCHHHHEEEEECSSSCEEEEEEEEEEC
T ss_pred EEEEcCcCCCCccEEEEECCeEEEEEEEEEecC
Confidence 999999999999999999999999999999863
No 7
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.5e-69 Score=625.22 Aligned_cols=417 Identities=38% Similarity=0.669 Sum_probs=329.1
Q ss_pred CCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEee
Q 004209 336 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 415 (768)
Q Consensus 336 ~~~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~ 415 (768)
..+..++|+|+||+|+|||||+++|++..+.+..+.+.++++.+...|+++|.++|++|...+|+++|+|++.....|.+
T Consensus 173 ~~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~ 252 (592)
T 3mca_A 173 NPKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES 252 (592)
T ss_dssp CCCCEEEEEEECCSSSTHHHHHHHHHHHHHCC------------------------------------------------
T ss_pred cCCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEe
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccc
Q 004209 416 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 495 (768)
Q Consensus 416 ~~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s 495 (768)
+++.++|||||||.+|..+|+.++..+|++||||||+.|.|+.++.. +.|+++|+.++..+++|++|||+||||+++|+
T Consensus 253 ~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~-~~qt~e~l~~~~~lgip~iIvviNKiDl~~~~ 331 (592)
T 3mca_A 253 DKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLE-NGQTREHAYLLRALGISEIVVSVNKLDLMSWS 331 (592)
T ss_dssp ------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCS-CSSHHHHHHHHHHSSCCCEEEEEECGGGGTTC
T ss_pred CCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCcccccccc-chHHHHHHHHHHHcCCCeEEEEEecccccccc
Confidence 99999999999999999999999999999999999999988877743 47999999999999998899999999999888
Q ss_pred hhhHHHHHHHHhHHH-hhcCCCCCCCcEEEeecccCCCcccCCCCcccccccCCcchhhhhhccCCCCCCCCCCceeeeE
Q 004209 496 KDRFDSIKVQLGTFL-RSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPPPREFSKPLLMPIC 574 (768)
Q Consensus 496 ~e~~~~i~~el~~~l-k~~g~~~~~i~~IpVSA~tG~gI~e~~~~~~~~~wy~G~~LLe~L~~l~~~~~~~~~plr~~I~ 574 (768)
+++++.+..++..++ +.+++....++|||+||++|.|+.++... ..++||+|++|+++|..+.++.+..+.|++|+|+
T Consensus 332 ~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~-~~~~w~~g~~Lle~l~~~~pp~~~~~~p~r~~v~ 410 (592)
T 3mca_A 332 EDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSS-DLYKWYKGPTLLSALDQLVPPEKPYRKPLRLSID 410 (592)
T ss_dssp HHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCC-GGGGTCCSCCHHHHHHTSCCCSCTTTSCCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCccccccccc-ccccccchHHHHHHHHhhccccccccccchheee
Confidence 899999999999999 88898766789999999999999875432 4689999999999998887787888999999999
Q ss_pred eEEeeCCCcEEEEEEEecCcccCCCEEEEccCCeeeEEEeeeecccccc-eeccCCceEEEecccccccccCCcccccCC
Q 004209 575 DVLKSQHGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERDSQSCS-VARAGDNIAVSLQGIDVSRVMSGGVLCHPD 653 (768)
Q Consensus 575 dv~~~~~G~V~v~G~V~sG~L~~Gd~v~i~P~~~~~~VksI~~~~~~v~-~A~aGd~V~l~L~gi~~~~i~rG~VL~~~~ 653 (768)
++|++..|++ ++|+|.+|+|++||+|.++|.+..++|++|++++.+++ .|.|||+|+|.|+|++..++++||||++++
T Consensus 411 ~v~~~~~g~v-~~G~v~~G~l~~Gd~v~i~p~~~~~~V~~i~~~~~~~~~~a~aG~~v~~~l~~i~~~~i~rG~vl~~~~ 489 (592)
T 3mca_A 411 DVYRSPRSVT-VTGRVEAGNVQVNQVLYDVSSQEDAYVKNVIRNSDPSSTWAVAGDTVTLQLADIEVNQLRPGDILSNYE 489 (592)
T ss_dssp EEEEETTEEE-EEEEEEESEEETTCEEEETTTTEEEEEEEEECSSSCSCCEEETTCEEEEEESSSCGGGCCTTCEEECSS
T ss_pred EEEecCCeEE-EEEEEeeeeEccCCEEEEccCCceEEEEEEEEcCccCcceecCCCEEEEEEccccccccceEEEeccCC
Confidence 9999866666 89999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred CCcceeeEEEEEEEeeCCCCCccCCCeeEEEEeeeeEEEEEEEEEeecccccCcccccCCcccCCCCeEEEEEE-eCceE
Q 004209 654 FPVAIATHLELKVLVLDFAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVA-LQEPV 732 (768)
Q Consensus 654 ~p~~~~~~F~a~i~vl~~~~pI~~G~~~~lhig~~~~~a~I~~I~~~lD~~tg~~~k~~p~~L~~gd~a~v~l~-l~~pI 732 (768)
.|+..+..|+|+++||.++.||..|++++||+|+.+++|+| .|... .++.|++|++|+.+.|+|+ |.+|+
T Consensus 490 ~~~~~~~~f~a~v~~~~~~~pi~~g~~~~l~~~t~~~~~~i-~l~~~--------~~~~~~~l~~gd~~~v~l~fl~~p~ 560 (592)
T 3mca_A 490 NPVRRVRSFVAEIQTFDIHGPILSGSTLVLHLGRTVTSVSL-KIVTV--------NNKRSRHIASRKRALVRISFLDGLF 560 (592)
T ss_dssp SCCEEESEEEEEEEECSCSSCEETTEEEEEECSSCEEEEEE-EEEES--------SSSCCSEECSSCEEEEEEEESSSCE
T ss_pred CCccccCeEEEEEEEECCCccCCCCCEEEEEEcCcEEEEEE-EEEec--------cccchhccCCCCEEEEEEEECCCcE
Confidence 88888999999999999989999999999999999999999 88651 2456889999999999999 99999
Q ss_pred EeecccccCCcceEEEEeCCcEEEEEEEEeec
Q 004209 733 CVEEFSNCRALGRAFLRSSGRTIAVGIVTRII 764 (768)
Q Consensus 733 ~~e~~~~~~~lGRfILR~~g~TvgvG~V~~v~ 764 (768)
|++.|.+++.+|||+||+.|+|||+|+|++|+
T Consensus 561 ~~e~~~~~~~~~rfilr~~~~Tv~~G~i~~v~ 592 (592)
T 3mca_A 561 PLCLAEECPALGRFILRRSGDTVAAGIVKELC 592 (592)
T ss_dssp EECCTTTCHHHHEEEEESSSSEEEEEEEEEEC
T ss_pred EEEeccCCCCCCeEEEEECCcEEEEEEEEEcC
Confidence 99999999999999999999999999999874
No 8
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=100.00 E-value=3.7e-64 Score=566.65 Aligned_cols=408 Identities=27% Similarity=0.470 Sum_probs=353.2
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCC--CccchhhccccchhhhccCeEEEEEEEEEee
Q 004209 338 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGK--GSFAYAWALDESAEERERGITMTVAVAYFDS 415 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk--~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~ 415 (768)
+..++|+++||+|+|||||+++|++..+.+..+.+.+++..+...+. ..|.+++.+|...+|+++|+|++.++..+.+
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 35689999999999999999999998888877776666666555554 5678889999999999999999999999999
Q ss_pred CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccc
Q 004209 416 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 495 (768)
Q Consensus 416 ~~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s 495 (768)
.+..++|||||||++|..++..++..+|++||||||+++. ..|+++|+.++..++++++|||+||+|+.+++
T Consensus 102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~--------~~qt~~~l~~~~~~~~~~iIvviNK~Dl~~~~ 173 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGV--------QTQTRRHSYIASLLGIKHIVVAINKMDLNGFD 173 (434)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCS--------CHHHHHHHHHHHHTTCCEEEEEEECTTTTTSC
T ss_pred CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCC--------cHHHHHHHHHHHHcCCCeEEEEEEcCcCCccc
Confidence 9999999999999999999999999999999999999874 57999999999999998899999999999877
Q ss_pred hhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCcccCCCCcccccccCCcchhhhhhccCCCCCCCCCCceeeeEe
Q 004209 496 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPPPREFSKPLLMPICD 575 (768)
Q Consensus 496 ~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e~~~~~~~~~wy~G~~LLe~L~~l~~~~~~~~~plr~~I~d 575 (768)
+++++.+.+++..+++.+++....++++++||++|+|+.+... .++||.|++|++.|+.++++.+..+.|++|+|++
T Consensus 174 ~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~---~~~w~~g~~L~~~l~~i~~~~~~~~~~~~~~v~~ 250 (434)
T 1zun_B 174 ERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSE---RSPWYAGQSLMEILETVEIASDRNYTDLRFPVQY 250 (434)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCT---TCTTCCSCCTTHHHHHSCCTTCCCSSSCEEECCE
T ss_pred HHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccccc---cCccccCchHHHHHhcCCCcccCCCCCcEEEEEE
Confidence 7888888899999998888433457899999999999988654 3799999999999999988887788999999999
Q ss_pred EEeeC-CCcEEEEEEEecCcccCCCEEEEccCCeeeEEEeeeecccccceeccCCceEEEecccccccccCCcccccCCC
Q 004209 576 VLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGGVLCHPDF 654 (768)
Q Consensus 576 v~~~~-~G~V~v~G~V~sG~L~~Gd~v~i~P~~~~~~VksI~~~~~~v~~A~aGd~V~l~L~gi~~~~i~rG~VL~~~~~ 654 (768)
+++.. .|+. +.|+|.+|+|++||+|.++|.+..++|++|++++.++++|.|||+|++.|++ ..++++||+|++++.
T Consensus 251 v~~~~~~~~g-~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~~a~aG~~v~~~l~~--~~~i~~G~~l~~~~~ 327 (434)
T 1zun_B 251 VNRPNLNFRG-FAGTLASGIVHKGDEIVVLPSGKSSRVKSIVTFEGELEQAGPGQAVTLTMED--EIDISRGDLLVHADN 327 (434)
T ss_dssp EECSSSSCCE-EEEECCBSCEETTCEEEETTTCCEEEEEEEEETTEEESEECTTCEEEEEESS--CCCCCTTCEEEETTS
T ss_pred EeccCCCceE-EEEEEecceEeCCCEEEEecCCeEEEEEEEEEcCcceeEecCCCEEEEEeCC--ccccCCccEEECCCC
Confidence 99887 6777 7899999999999999999999999999999999999999999999999874 346899999999998
Q ss_pred CcceeeEEEEEEEeeCCCCCccCCCeeEEEEeeeeEEEEEEEEEeecccccCcccccCCcccCCCCeEEEEEEeCceEEe
Q 004209 655 PVAIATHLELKVLVLDFAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVALQEPVCV 734 (768)
Q Consensus 655 p~~~~~~F~a~i~vl~~~~pI~~G~~~~lhig~~~~~a~I~~I~~~lD~~tg~~~k~~p~~L~~gd~a~v~l~l~~pI~~ 734 (768)
++..++.|+|++.|++ +.||..|++++||+|+.+++|+|..|.+.+|.+|++ ++++++|++||.+.|+|+|.+|+|+
T Consensus 328 ~~~~~~~f~a~~~~l~-~~~l~~g~~~~~~~~t~~~~~~v~~~~~~~d~~~~~--~~~~~~l~~~d~~~v~~~~~~p~~~ 404 (434)
T 1zun_B 328 VPQVSDAFDAMLVWMA-EEPMLPGKKYDIKRATSYVPGSIASITHRVDVNTLE--EGPASSLQLNEIGRVKVSLDAPIAL 404 (434)
T ss_dssp CCCEEEEEEEEEEECC-SSCBCTTCCEEEECSSCEEEEEEEEEEEEECTTTCC--CCCCSCBCTTCEEEEEEEEEEEEEC
T ss_pred CCCcccEEEEEEEEec-cccCCCCCEEEEEEcCCEEEEEEEEEeeeecccccc--ccCccEeCCCCEEEEEEEECCeEEE
Confidence 8888999999999996 689999999999999999999999999999999987 4678999999999999999999999
Q ss_pred ecccccCCcceEEEEe--CCcEEEEEEEEe
Q 004209 735 EEFSNCRALGRAFLRS--SGRTIAVGIVTR 762 (768)
Q Consensus 735 e~~~~~~~lGRfILR~--~g~TvgvG~V~~ 762 (768)
++|.+++.+|||+||+ .|+|||+|+|+.
T Consensus 405 ~~~~~~~~~grf~l~d~~~~~tv~~G~i~~ 434 (434)
T 1zun_B 405 DGYSSNRTTGAFIVIDRLTNGTVAAGMIIA 434 (434)
T ss_dssp CCTTTCTTTTEEEEECTTTCCEEEEEEEEC
T ss_pred cccccCCccceEEEEECCCCcEEEEEEEeC
Confidence 9999999999999986 489999999973
No 9
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=100.00 E-value=3.1e-58 Score=512.81 Aligned_cols=377 Identities=30% Similarity=0.426 Sum_probs=331.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCe
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 418 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~ 418 (768)
+.++|+++||+|+|||||+++|++.. ...|+..|...+.+|...+|+++|+|++.....+...++
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~---------------~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~ 66 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKIL---------------AEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAAR 66 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHH---------------HHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSC
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChh---------------hhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCe
Confidence 46899999999999999999998531 112333333334578888999999999999988988899
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccchhh
Q 004209 419 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 498 (768)
Q Consensus 419 ~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~e~ 498 (768)
.++|||||||++|..+|..++..+|++||||||+++. ..|+++|+.++..+++|++|||+||||+.+ +++.
T Consensus 67 ~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~--------~~qt~e~l~~~~~~~vp~iivviNK~Dl~~-~~~~ 137 (397)
T 1d2e_A 67 HYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGP--------MPQTREHLLLARQIGVEHVVVYVNKADAVQ-DSEM 137 (397)
T ss_dssp EEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCS--------CHHHHHHHHHHHHTTCCCEEEEEECGGGCS-CHHH
T ss_pred EEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCC--------CHHHHHHHHHHHHcCCCeEEEEEECcccCC-CHHH
Confidence 9999999999999999999999999999999999874 579999999999999997789999999985 3567
Q ss_pred HHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCcccCCCCcccccccCC--cchhhhhhc-cCCCCCCCCCCceeeeEe
Q 004209 499 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKG--PCLLDAIDS-LRPPPREFSKPLLMPICD 575 (768)
Q Consensus 499 ~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e~~~~~~~~~wy~G--~~LLe~L~~-l~~~~~~~~~plr~~I~d 575 (768)
++.+.+++..+++.+++....++++++||++|.|.. .++||.| ..|+++|.. ++.|.+..+.|++|+|++
T Consensus 138 ~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~n~~-------~~~~~~g~i~~Ll~~l~~~~p~p~~~~~~p~~~~v~~ 210 (397)
T 1d2e_A 138 VELVELEIRELLTEFGYKGEETPIIVGSALCALEQR-------DPELGLKSVQKLLDAVDTYIPVPTRDLEKPFLLPVES 210 (397)
T ss_dssp HHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTTC-------CTTTTHHHHHHHHHHHHHHSCCCCCCTTSCCEEECCE
T ss_pred HHHHHHHHHHHHHHcCCCcccCcEEEeehhhccccc-------CCCccCCcHHHHHHHHHHhCCCCCCCCCCcEEEEEEE
Confidence 777888999999998886667899999999998842 2689987 578999865 677777788999999999
Q ss_pred EEeeC-CCcEEEEEEEecCcccCCCEEEEccCC--eeeEEEeeeecccccceeccCCceEEEecccccccccCCcccccC
Q 004209 576 VLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSG--EVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGGVLCHP 652 (768)
Q Consensus 576 v~~~~-~G~V~v~G~V~sG~L~~Gd~v~i~P~~--~~~~VksI~~~~~~v~~A~aGd~V~l~L~gi~~~~i~rG~VL~~~ 652 (768)
+|.++ .|+| ++|+|.+|+|++||+|.+.|.+ ..++|++|++++.++++|.|||+|++.|+|++..++++||+|+++
T Consensus 211 v~~~~~~G~v-~~g~v~~G~l~~gd~v~~~~~~~~~~~~V~~i~~~~~~~~~a~aG~~v~~~l~~i~~~~i~~G~~l~~~ 289 (397)
T 1d2e_A 211 VYSIPGRGTV-VTGTLERGILKKGDECEFLGHSKNIRTVVTGIEMFHKSLDRAEAGDNLGALVRGLKREDLRRGLVMAKP 289 (397)
T ss_dssp EEEETTTEEE-EEEECCBSEEETTCEEEEEETTEEEEEEEEEEEETTEEESEEETTCEEEEEESSCCGGGCCTTCEEEST
T ss_pred EEEeCCceEE-EEEEEeeceEeCCCEEEEeCCCCCeEEEEEEEEECCcccCEecCCCceEEEecccchhccCceeEEeCC
Confidence 99999 9999 8999999999999999999975 789999999999999999999999999999999999999999998
Q ss_pred CCCcceeeEEEEEEEeeCCC-----CCccCCCeeEEEEeeeeEEEEEEEEEeecccccCcccccCCcccCCCCeEEEEEE
Q 004209 653 DFPVAIATHLELKVLVLDFA-----PPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVA 727 (768)
Q Consensus 653 ~~p~~~~~~F~a~i~vl~~~-----~pI~~G~~~~lhig~~~~~a~I~~I~~~lD~~tg~~~k~~p~~L~~gd~a~v~l~ 727 (768)
+. +..++.|+|++.||++. +||..|+++.+|+++.+++|+|. +. + .+.+|++|+.+.|+|+
T Consensus 290 ~~-~~~~~~f~a~v~~l~~~~~~~~~~~~~g~~~~~~~~t~~~~~~i~-l~------~------~~~~l~~~~~~~v~~~ 355 (397)
T 1d2e_A 290 GS-IQPHQKVEAQVYILTKEEGGRHKPFVSHFMPVMFSLTWDMACRII-LP------P------GKELAMPGEDLKLTLI 355 (397)
T ss_dssp TS-CCCEEEEEEEEEECCGGGTSCSSCBCTTCCCEEEETTEEEEEEEE-CC------S------SCCCBCTTCEEEEEEE
T ss_pred CC-CCcccEEEEEEEEeccccccCccccCCCCEEEEEEecCEEEEEEE-Ec------C------CcccccCCCEEEEEEE
Confidence 74 56689999999999863 69999999999999999999997 31 1 2578999999999999
Q ss_pred eCceEEeecccccCCcceEEEEeCCcEEEEEEEEeecccC
Q 004209 728 LQEPVCVEEFSNCRALGRAFLRSSGRTIAVGIVTRIIEDQ 767 (768)
Q Consensus 728 l~~pI~~e~~~~~~~lGRfILR~~g~TvgvG~V~~v~~~~ 767 (768)
|.+|+|++++ +||+||+.|+|+|+|+|+++.+..
T Consensus 356 ~~~p~~~~~~------~r~~lr~~~~ti~~G~i~~~~~~~ 389 (397)
T 1d2e_A 356 LRQPMILEKG------QRFTLRDGNRTIGTGLVTDTPAMT 389 (397)
T ss_dssp EEEEECCCTT------CEEEEEETTEEEEEEEEEECCCCC
T ss_pred ECCeEEEccC------CeEEEEeCCeEEEEEEEeecccCc
Confidence 9999999986 499999999999999999988653
No 10
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=100.00 E-value=1.3e-56 Score=500.89 Aligned_cols=383 Identities=31% Similarity=0.469 Sum_probs=330.9
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCC-CccchhhccccchhhhccCeEEEEEEEEEeeC
Q 004209 338 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGK-GSFAYAWALDESAEERERGITMTVAVAYFDSK 416 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk-~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~ 416 (768)
+..++|+++||+|+|||||+++|++.. ...|+ ..|...+.+|...+|+++|+|++.....+.+.
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~---------------~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 73 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYVA---------------AAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETA 73 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHH---------------HHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECS
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhhh---------------hhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccC
Confidence 457899999999999999999999531 11222 22222235788899999999999998889988
Q ss_pred CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccch
Q 004209 417 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 496 (768)
Q Consensus 417 ~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~ 496 (768)
+..++|||||||++|..++..++..+|++||||||+++. ..|+++|+.++..+++|++|+|+||+|+.+ ++
T Consensus 74 ~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~--------~~qt~~~l~~~~~~~ip~iivviNK~Dl~~-~~ 144 (405)
T 2c78_A 74 KRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGP--------MPQTREHILLARQVGVPYIVVFMNKVDMVD-DP 144 (405)
T ss_dssp SCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCC--------CHHHHHHHHHHHHTTCCCEEEEEECGGGCC-CH
T ss_pred CeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEECCCCC--------cHHHHHHHHHHHHcCCCEEEEEEECccccC-cH
Confidence 999999999999999999999999999999999999874 469999999999999998889999999985 35
Q ss_pred hhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCcccCCCC--cccccccCC-cchhhhhhc-cCCCCCCCCCCceee
Q 004209 497 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD--GRLLSWYKG-PCLLDAIDS-LRPPPREFSKPLLMP 572 (768)
Q Consensus 497 e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e~~~~--~~~~~wy~G-~~LLe~L~~-l~~~~~~~~~plr~~ 572 (768)
+.++.+..++..+++.+++....++++++||++|.|+.+.... ...++||.+ ..|+++|.. +++|.+..+.|++|+
T Consensus 145 ~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~p~~~~~~p~~~~ 224 (405)
T 2c78_A 145 ELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMP 224 (405)
T ss_dssp HHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCCCCCCCSSCCEEE
T ss_pred HHHHHHHHHHHHHHHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCCCCCCCCCCcEEE
Confidence 6677788889999998888655689999999999986542110 013679876 568888865 677777788999999
Q ss_pred eEeEEeeC-CCcEEEEEEEecCcccCCCEEEEccCC---eeeEEEeeeecccccceeccCCceEEEecccccccccCCcc
Q 004209 573 ICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSG---EVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGGV 648 (768)
Q Consensus 573 I~dv~~~~-~G~V~v~G~V~sG~L~~Gd~v~i~P~~---~~~~VksI~~~~~~v~~A~aGd~V~l~L~gi~~~~i~rG~V 648 (768)
|+++|+++ .|+| ++|+|.+|+|++||+|.++|.+ ..++|++|++++.++++|.|||+|++.|+|++..++++||+
T Consensus 225 v~~v~~~~~~G~v-~~g~v~~G~l~~gd~v~~~~~~~~~~~~~V~~i~~~~~~~~~a~aG~~v~~~l~g~~~~~i~~G~~ 303 (405)
T 2c78_A 225 VEDVFTITGRGTV-ATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVERGQV 303 (405)
T ss_dssp CCEEEEETTTEEE-EEEECCBSEEETTCEEEEESSSSSCEEEEEEEEEETTEEESEEETTCEEEEEESSCCTTTCCTTCE
T ss_pred EEEEEEcCCCceE-EEEEEecccccCCCEEEEeCCCCCeeeEEEEEEEECCcccCEEcCCCEEEEEECCCcHhhcCceEE
Confidence 99999999 9998 8999999999999999999988 68999999999999999999999999999999999999999
Q ss_pred cccCCCCcceeeEEEEEEEeeCC-----CCCccCCCeeEEEEeeeeEEEEEEEEEeecccccCcccccCCcccCCCCeEE
Q 004209 649 LCHPDFPVAIATHLELKVLVLDF-----APPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAI 723 (768)
Q Consensus 649 L~~~~~p~~~~~~F~a~i~vl~~-----~~pI~~G~~~~lhig~~~~~a~I~~I~~~lD~~tg~~~k~~p~~L~~gd~a~ 723 (768)
|++++. +..++.|+|++.||++ ++||..|+++.+|+++.+++|+|. +. + .+.+|++|+.+.
T Consensus 304 l~~~~~-~~~~~~f~a~v~~l~~~~~~~~~~~~~g~~~~~~~~t~~~~~~i~-~~------~------~~~~l~~~~~~~ 369 (405)
T 2c78_A 304 LAKPGS-ITPHTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQ-LP------P------GVEMVMPGDNVT 369 (405)
T ss_dssp EESTTS-SEEEEEEEEEEEECCGGGTSCSSCBCTTCCCEEEETTEEEEEEEE-CC------T------TCCCBCTTCEEE
T ss_pred EEcCCC-CceeEEEEEEEEEecccCCCccccccCCceEEEEEcccEEEEEEE-Ec------c------CccccCCCCEEE
Confidence 999884 6678999999999984 369999999999999999999997 31 1 256899999999
Q ss_pred EEEEeCceEEeecccccCCcceEEEEeCCcEEEEEEEEeecc
Q 004209 724 VEVALQEPVCVEEFSNCRALGRAFLRSSGRTIAVGIVTRIIE 765 (768)
Q Consensus 724 v~l~l~~pI~~e~~~~~~~lGRfILR~~g~TvgvG~V~~v~~ 765 (768)
|+|+|.+|+|+++| +||+||+.|+|+|+|+|+++.+
T Consensus 370 v~~~~~~p~~~~~~------~rf~lr~~~~ti~~G~i~~~~~ 405 (405)
T 2c78_A 370 FTVELIKPVALEEG------LRFAIREGGRTVGAGVVTKILE 405 (405)
T ss_dssp EEEEEEEEEEECTT------CEEEEEETTEEEEEEEEEEECC
T ss_pred EEEEECceEEEccC------CEEEEEcCCeEEEEEEEEeccC
Confidence 99999999999987 4999999999999999999864
No 11
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=100.00 E-value=2.1e-53 Score=513.37 Aligned_cols=379 Identities=29% Similarity=0.449 Sum_probs=315.1
Q ss_pred CCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEee
Q 004209 336 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 415 (768)
Q Consensus 336 ~~~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~ 415 (768)
..+..++|+++||+|+|||||+++|++.. ...|+..+...+.+|...+|+++|+|++.....+..
T Consensus 292 ~~k~~lnIvIIGhvDvGKSTLInrLt~~~---------------~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~ 356 (1289)
T 3avx_A 292 RTKPHVNVGTIGHVDHGKTTLTAAITTVL---------------AKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDT 356 (1289)
T ss_dssp CCCCEEEEEEEESTTSSHHHHHHHHHHHH---------------HHHSCC---------------------CCSCEEEEC
T ss_pred ccCCeeEEEEEcCCCCCHHHHHHHHHhhh---------------ccccccccccccccccccccccCceeEEEEEEEEcC
Confidence 34567999999999999999999998531 112222222122578889999999999998888888
Q ss_pred CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccc
Q 004209 416 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 495 (768)
Q Consensus 416 ~~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s 495 (768)
.+..++|||||||++|..+|+.++..+|++||||||+++. ..|+++|+.++..+++|++|||+||||+++ +
T Consensus 357 ~~~kI~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdGv--------~~QTrEhL~ll~~lgIP~IIVVINKiDLv~-d 427 (1289)
T 3avx_A 357 PTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGP--------MPQTREHILLGRQVGVPYIIVFLNKCDMVD-D 427 (1289)
T ss_dssp SSCEEEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTCS--------CTTHHHHHHHHHHHTCSCEEEEEECCTTCC-C
T ss_pred CCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEcCCccC--------cHHHHHHHHHHHHcCCCeEEEEEeeccccc-c
Confidence 8999999999999999999999999999999999999884 469999999999999998899999999986 3
Q ss_pred hhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCcccCCCCcccccccCC-cchhhhhhc-cCCCCCCCCCCceeee
Q 004209 496 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKG-PCLLDAIDS-LRPPPREFSKPLLMPI 573 (768)
Q Consensus 496 ~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e~~~~~~~~~wy~G-~~LLe~L~~-l~~~~~~~~~plr~~I 573 (768)
+++++.+.+++..+++.+++....++++++||++|.+- ..+||.| ..|+++|.. ++.|.+..+.|++|+|
T Consensus 428 ~e~le~i~eEi~elLk~~G~~~~~vp~IpvSAktG~ng--------~~~w~eGI~eLleaL~~~Ip~P~r~~d~Pfr~pI 499 (1289)
T 3avx_A 428 EELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEG--------DAEWEAKILELAGFLDSYIPEPERAIDKPFLLPI 499 (1289)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCTTTCCEEECCSTTTTTC--------CHHHHHHHHHHHHHHHHTSCCCCCGGGSCCEEEC
T ss_pred hhhHHHHHHHHHHHHHhccccccceeEEEEEeccCCCC--------CccccccchhhHhHHhhhcCCCccccccceeeec
Confidence 56777788899999999888666789999999999542 1468876 568888865 6667777789999999
Q ss_pred EeEEeeC-CCcEEEEEEEecCcccCCCEEEEccCC--eeeEEEeeeecccccceeccCCceEEEecccccccccCCcccc
Q 004209 574 CDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSG--EVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGGVLC 650 (768)
Q Consensus 574 ~dv~~~~-~G~V~v~G~V~sG~L~~Gd~v~i~P~~--~~~~VksI~~~~~~v~~A~aGd~V~l~L~gi~~~~i~rG~VL~ 650 (768)
+++|.++ .|+| ++|+|.+|+|++||+|.++|.+ ..++|++|++++.++++|.|||+|+|.|+|++..++++||||+
T Consensus 500 d~Vf~i~G~GtV-vtGrV~sGtLkvGD~V~I~ps~~~~~~kVksI~~~~~~v~eA~AGd~Vgl~L~GI~~~dI~RGdVL~ 578 (1289)
T 3avx_A 500 EDVFSISGRGTV-VTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLA 578 (1289)
T ss_dssp CEEEEETTTEEE-EEEECCBSEEETTCEEEEESSSSCEEEEEEEEECSSCEESEEETTCEEEEEESSCCGGGCCTTCEEE
T ss_pred cccccccCCcEE-EEEEEeccEEecCCEEEEecCCCceeEEEEEEeecCceeeEEecCCcceeEeeecchhcCCcccEEe
Confidence 9999999 9999 8999999999999999999988 6899999999999999999999999999999999999999999
Q ss_pred cCCCCcceeeEEEEEEEeeCC-----CCCccCCCeeEEEEeeeeEEEEEEEEEeecccccCcccccCCcccCCCCeEEEE
Q 004209 651 HPDFPVAIATHLELKVLVLDF-----APPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVE 725 (768)
Q Consensus 651 ~~~~p~~~~~~F~a~i~vl~~-----~~pI~~G~~~~lhig~~~~~a~I~~I~~~lD~~tg~~~k~~p~~L~~gd~a~v~ 725 (768)
+++. +...+.|+|++.||.+ ++||..|+++.+|+++.+++|+|. | . ..+.+|++|+.+.|+
T Consensus 579 ~~~~-~~~~~~F~A~V~~L~~~egg~~~pi~~G~~p~l~igT~~vtg~I~-L---~---------~~~~~L~~Gd~a~V~ 644 (1289)
T 3avx_A 579 KPGT-IKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIE-L---P---------EGVEMVMPGDNIKMV 644 (1289)
T ss_dssp STTS-CCEEEEEEEEEEECCGGGTSCSSCBCTTCCCEEECSSCEEEEEEE-C---C---------TTCCCBCTTCCCEEE
T ss_pred cCCC-CccceeEEEEEEEEccccccccccccCCCceEEEEeeeeEEEEEE-E---C---------CCcccccCCCEEEEE
Confidence 9875 4668999999999974 468999999999999999999996 2 1 125689999999999
Q ss_pred EEeCceEEeecccccCCcceEEEEeCCcEEEEEEEEeecccC
Q 004209 726 VALQEPVCVEEFSNCRALGRAFLRSSGRTIAVGIVTRIIEDQ 767 (768)
Q Consensus 726 l~l~~pI~~e~~~~~~~lGRfILR~~g~TvgvG~V~~v~~~~ 767 (768)
|+|.+|+|++++ +||+||+.|+|||+|+|+++.++.
T Consensus 645 L~l~~Pi~ve~g------~RFiLRd~grTIG~G~V~~v~~~~ 680 (1289)
T 3avx_A 645 VTLIHPIAMDDG------LRFAIREGGRTVGAGVVAKVLSGA 680 (1289)
T ss_dssp EEEEEEEECCTT------CEEEEEETTEEEEEEEEEEECCCC
T ss_pred EEECceEEEccC------CEEEEEeCCeEEEEEEEeeechhh
Confidence 999999999986 599999999999999999998654
No 12
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=100.00 E-value=2.1e-54 Score=493.11 Aligned_cols=366 Identities=24% Similarity=0.374 Sum_probs=308.3
Q ss_pred CCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEee
Q 004209 336 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 415 (768)
Q Consensus 336 ~~~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~ 415 (768)
..++.++|+++||+|+|||||+++|++.. ..+.+|...+|+++|+|++..+..+.+
T Consensus 15 ~~m~~~~I~iiG~~d~GKSTLi~~L~~~~------------------------~~~~~d~~~~e~~~GiTi~~~~~~~~~ 70 (482)
T 1wb1_A 15 MDFKNINLGIFGHIDHGKTTLSKVLTEIA------------------------STSAHDKLPESQKRGITIDIGFSAFKL 70 (482)
T ss_dssp CCCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------------------------------CCCEEEE
T ss_pred hcCCCCEEEEECCCCChHHHHHHHHHCCC------------------------cccccccccccccCccEEecceEEEEE
Confidence 34678999999999999999999998421 013467788899999999999999999
Q ss_pred CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccc
Q 004209 416 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 495 (768)
Q Consensus 416 ~~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s 495 (768)
+++.++|||||||++|..++..++..+|++||||||++|. ++|+++|+.++..+++|. |||+||+|+++
T Consensus 71 ~~~~i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g~--------~~qt~e~l~~~~~~~ip~-IvviNK~Dl~~-- 139 (482)
T 1wb1_A 71 ENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGP--------KTQTGEHMLILDHFNIPI-IVVITKSDNAG-- 139 (482)
T ss_dssp TTEEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCS--------CHHHHHHHHHHHHTTCCB-CEEEECTTSSC--
T ss_pred CCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEecCCCc--------cHHHHHHHHHHHHcCCCE-EEEEECCCccc--
Confidence 9999999999999999999999999999999999999874 579999999999999995 99999999985
Q ss_pred hhhHHHHHHHHhHHHhhc-CCCCCCCcEEEeecccCCCcccCCCCcccccccCCcchhhhhhc-cCCC--CCCCCCCcee
Q 004209 496 KDRFDSIKVQLGTFLRSC-GFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDS-LRPP--PREFSKPLLM 571 (768)
Q Consensus 496 ~e~~~~i~~el~~~lk~~-g~~~~~i~~IpVSA~tG~gI~e~~~~~~~~~wy~G~~LLe~L~~-l~~~--~~~~~~plr~ 571 (768)
+++++.+.+++..+++.. ++. .++++++||++|+|+.+ |+++|.. ++.+ .+..+.|++|
T Consensus 140 ~~~~~~~~~~l~~~l~~~~~~~--~~~ii~vSA~~g~gI~~---------------L~~~L~~~i~~~~~~~~~~~~~~~ 202 (482)
T 1wb1_A 140 TEEIKRTEMIMKSILQSTHNLK--NSSIIPISAKTGFGVDE---------------LKNLIITTLNNAEIIRNTESYFKM 202 (482)
T ss_dssp HHHHHHHHHHHHHHHHHSSSGG--GCCEEECCTTTCTTHHH---------------HHHHHHHHHHHSCCCCCSSSCCBC
T ss_pred chhHHHHHHHHHHHHhhhcccc--cceEEEEECcCCCCHHH---------------HHHHHHHhhcCccccccccccccc
Confidence 567788888898888877 654 46899999999999965 7777754 2223 5566789999
Q ss_pred eeEeEEeeC-CCcEEEEEEEecCcccCCCEEEEccCCeeeEEEeeeecccccceeccCCceEEEecccccccccCCccc-
Q 004209 572 PICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGGVL- 649 (768)
Q Consensus 572 ~I~dv~~~~-~G~V~v~G~V~sG~L~~Gd~v~i~P~~~~~~VksI~~~~~~v~~A~aGd~V~l~L~gi~~~~i~rG~VL- 649 (768)
+|+++|.++ .|+| ++|+|.+|.|++||.|.++|.+..++|++|++++.+++.|.|||+|++.|+|++..++++||+|
T Consensus 203 ~v~~v~~~~g~G~v-~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~v~~a~~G~~v~~~l~~~~~~~i~~Gdvl~ 281 (482)
T 1wb1_A 203 PLDHAFPIKGAGTV-VTGTINKGIVKVGDELKVLPINMSTKVRSIQYFKESVMEAKAGDRVGMAIQGVDAKQIYRGXILT 281 (482)
T ss_dssp BCSCEECCSSCCCE-ECCCCCBSCCCSSEEECCTTTCCCEEECCBCGGGSCBCCCCSSCCCCEECSSCCSSCCCSSCBCC
T ss_pred cceeEEEecCCceE-EEEEEEEeEEeeCCEEEECCCCcEEEEeEEEECCeEeeEecCCCEEEEEecCCCHhhccccceEe
Confidence 999999998 9999 8999999999999999999999999999999999999999999999999999998899999999
Q ss_pred ccCCCCcceeeEEEEEEEeeCC-CCCccCCCeeEEEEeeeeEEEEEEEEE-eecccccCcccccCCcccCCCCeEEEEEE
Q 004209 650 CHPDFPVAIATHLELKVLVLDF-APPILIGSQLECHIHHAKEAARIVKIT-SLLDTKTGKVTKKSPRCLTAKQSAIVEVA 727 (768)
Q Consensus 650 ~~~~~p~~~~~~F~a~i~vl~~-~~pI~~G~~~~lhig~~~~~a~I~~I~-~~lD~~tg~~~k~~p~~L~~gd~a~v~l~ 727 (768)
+.++ ++..++.|+|++.|+++ +.||..|+++.+|+|+.+++|+|..+. ..+|.+++... +++|++|+.+.|+|+
T Consensus 282 ~~~~-~~~~~~~~~a~v~~l~~~~~~l~~g~~~~l~~~t~~~~~~v~~~~~~~~d~~~~~~~---~~~l~~g~~~~v~l~ 357 (482)
T 1wb1_A 282 SKDT-KLQTVDKIVAKIKISDIFKYNLTPKMKVHLNVGMLIVPAVAVPFKKVTFGKTEENII---LNEVISGNEXYXAFE 357 (482)
T ss_dssp CTTC-CCCCEEEEEECCCCCSSCCSCCCSSCEEEEEETTEEEEEEEEEEEECCSSSCCCEEE---CCSSCCSSCCCEEEE
T ss_pred cCCC-CCceeeEEEEEEEEeccCCcccCCCCEEEEEEcccEEEEEEEEEecccccccccccc---chhhcCCCEEEEEEE
Confidence 6555 56678999999999985 589999999999999999999999998 88998876432 578999999999999
Q ss_pred eCceEEeecccccCCcceEEEEe---C---CcEEEEEEEEeec
Q 004209 728 LQEPVCVEEFSNCRALGRAFLRS---S---GRTIAVGIVTRII 764 (768)
Q Consensus 728 l~~pI~~e~~~~~~~lGRfILR~---~---g~TvgvG~V~~v~ 764 (768)
|.+|+|++++ +||+||+ . ++|+|+|+|+++.
T Consensus 358 ~~~pv~~~~~------~rfilr~~~~~~~~~~tvg~G~v~~~~ 394 (482)
T 1wb1_A 358 LEEKVLAEVG------DRVLITRLDLPPTTLRIXGHGLIEEFK 394 (482)
T ss_dssp EEEEECCCSS------CCCBEECTTSCTTSCCCCCBCCEEECC
T ss_pred cCccEEecCC------CeEEEEECCCCccCceEeeEEEEEecc
Confidence 9999999875 5999998 3 7999999999874
No 13
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=100.00 E-value=1.6e-51 Score=454.64 Aligned_cols=333 Identities=20% Similarity=0.255 Sum_probs=289.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCeEEE
Q 004209 342 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 421 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~~i~ 421 (768)
+|+++||+|+|||||+++|+ ++|+|++.++..++++++.++
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~---------------------------------------~~giTi~~~~~~~~~~~~~i~ 63 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG---------------------------------------KKGTSSDITMYNNDKEGRNMV 63 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS---------------------------------------EEEEESSSEEEEECSSSSEEE
T ss_pred EEEEECCCCCCHHHHHHHHH---------------------------------------hCCEEEEeeEEEEecCCeEEE
Confidence 99999999999999999997 278999999999999999999
Q ss_pred EEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEe-cccccccchhhHH
Q 004209 422 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVN-KMDAVQYSKDRFD 500 (768)
Q Consensus 422 lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvN-KmDlv~~s~e~~~ 500 (768)
|||||||++|..+++.+++.+|++||||| +.+. ..|+++|+.++..+++|.+|||+| |||+ + .+.++
T Consensus 64 iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~g~--------~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~--~~~~~ 131 (370)
T 2elf_A 64 FVDAHSYPKTLKSLITALNISDIAVLCIP-PQGL--------DAHTGECIIALDLLGFKHGIIALTRSDST-H--MHAID 131 (370)
T ss_dssp EEECTTTTTCHHHHHHHHHTCSEEEEEEC-TTCC--------CHHHHHHHHHHHHTTCCEEEEEECCGGGS-C--HHHHH
T ss_pred EEECCChHHHHHHHHHHHHHCCEEEEEEc-CCCC--------cHHHHHHHHHHHHcCCCeEEEEEEeccCC-C--HHHHH
Confidence 99999999999999999999999999999 7763 579999999999999996689999 9999 4 55667
Q ss_pred HHHHHHhHHHhhcCCCCCCCcEEE--eeccc---CCCcccCCCCcccccccCCcchhhhhhccCCC----CCC-CCCCce
Q 004209 501 SIKVQLGTFLRSCGFKDASLTWIP--LSALE---NQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPP----PRE-FSKPLL 570 (768)
Q Consensus 501 ~i~~el~~~lk~~g~~~~~i~~Ip--VSA~t---G~gI~e~~~~~~~~~wy~G~~LLe~L~~l~~~----~~~-~~~plr 570 (768)
.+.+++..+++..++ ..+++++ +||++ |+|+.+ |++.|....++ ... ...|++
T Consensus 132 ~~~~~i~~~l~~~~~--~~~~ii~~~~SA~~~~~g~gi~~---------------L~~~l~~~~~~~~~~~~~~~~~p~r 194 (370)
T 2elf_A 132 ELKAKLKVITSGTVL--QDWECISLNTNKSAKNPFEGVDE---------------LKARINEVAEKIEAENAELNSLPAR 194 (370)
T ss_dssp HHHHHHHHHTTTSTT--TTCEEEECCCCTTSSSTTTTHHH---------------HHHHHHHHHHHHHHHHHHGGGSCCE
T ss_pred HHHHHHHHHHHhcCC--CceEEEecccccccCcCCCCHHH---------------HHHHHHhhccccccCCccccccccc
Confidence 777888888877665 3578999 99999 999865 66665332211 112 345678
Q ss_pred eeeEeEEeeC-CCcEEEEEEEecCcccCCCEEEEccCCeeeEEEeeeecccccceeccCCceEEEecccccccccCCccc
Q 004209 571 MPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGGVL 649 (768)
Q Consensus 571 ~~I~dv~~~~-~G~V~v~G~V~sG~L~~Gd~v~i~P~~~~~~VksI~~~~~~v~~A~aGd~V~l~L~gi~~~~i~rG~VL 649 (768)
++|+++|+++ .|++ ++|+|++|+|++||+|.++|.+..++|++|++++.++++|.|||+|++.|+|++..++++|++|
T Consensus 195 ~~v~~vf~~~~~G~v-~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~v~~a~aGd~v~i~l~gv~~~~i~~Gdvl 273 (370)
T 2elf_A 195 IFIDHAFNVTGKGCV-VLGVVKQGISKDKDKTKIFPLDRDIEIRSIQSHDVDIDSAPAGTRVGMRLKNVQAKDIERGFII 273 (370)
T ss_dssp EEEEEEECCC---CE-EEEEEEESEEETTCEEEEETTTEEEEEEEEEETTEEESEEETTCEEEEEEESCCGGGCCTTCEE
T ss_pred ccceeEEEcCCCceE-EEEEEECCEEeeCCEEEECCCCcEEEEeEEEECCCCccEEcCCCcceEEEeccCHHHcCCceEE
Confidence 8899999999 9999 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcceeeEEEEEEEeeCCCCCccCCCeeEEEEeeeeEEEEEEEEEeecccccCcccccCCcccCCCCeEEEEEEeC
Q 004209 650 CHPDFPVAIATHLELKVLVLDFAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVALQ 729 (768)
Q Consensus 650 ~~~~~p~~~~~~F~a~i~vl~~~~pI~~G~~~~lhig~~~~~a~I~~I~~~lD~~tg~~~k~~p~~L~~gd~a~v~l~l~ 729 (768)
++ .+ ..++.|+|++.|++++.||..|+++.+|+|+.+++|+|..|.. |.+ ++ ..+.+|+.+.|+|+|.
T Consensus 274 ~~--~~-~~~~~f~a~v~~l~~~~~i~~g~~~~~~~~t~~~~~~v~~l~~--d~~-~~------~~~~~g~~~~v~l~~~ 341 (370)
T 2elf_A 274 SD--KE-IVTTDYTLECTVSKFTKKIEPASVLHLFVGLQSEPVRVEKILV--DGN-EV------EEAKPGSTCVLELSGN 341 (370)
T ss_dssp ES--CC-EEEEEEEEEEEECTTSCCBCTTCEEEEEETTEEEEEEEEEEEE--TTE-EE------SCBCTTCEEEEEEEEE
T ss_pred EC--CC-ceeEEEEEEEEEECCCCCCCCCCEEEEEEcCCEEEEEEEEEEe--CCC-cc------eeecCCCEEEEEEEEC
Confidence 98 45 8889999999999988999999999999999999999998853 322 22 2456899999999999
Q ss_pred ceEEeecccccCCcceEEEEeCC---cEEEEEEEE
Q 004209 730 EPVCVEEFSNCRALGRAFLRSSG---RTIAVGIVT 761 (768)
Q Consensus 730 ~pI~~e~~~~~~~lGRfILR~~g---~TvgvG~V~ 761 (768)
+|+|+++|+ ||+||+.+ +|+|+|+|.
T Consensus 342 ~pi~~~~~~------rfilr~~~~~~~tig~G~~~ 370 (370)
T 2elf_A 342 KKLAYSKQD------RFLLANLDLTQRFAAYGFSK 370 (370)
T ss_dssp EEEEECTTS------CEEEECTTSSSCEEEEEEEC
T ss_pred cEEEEeCCC------EEEEEECCCCCEEEEEEEeC
Confidence 999999986 99999855 799999873
No 14
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=100.00 E-value=1.6e-50 Score=452.16 Aligned_cols=342 Identities=29% Similarity=0.411 Sum_probs=290.7
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeC
Q 004209 337 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 416 (768)
Q Consensus 337 ~~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~ 416 (768)
.+..++|+++||+|||||||+++|++. ..+...+|+++|+|++.++..+.+.
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~----------------------------~~~~~~~e~~~giTi~~~~~~~~~~ 58 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGV----------------------------WTDTHSEELRRGITIKIGFADAEIR 58 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTC----------------------------CCC--CGGGGSCSSSCCEEEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCC----------------------------ccccChhhhcCCcEEEEeeeeeecc
Confidence 346789999999999999999999831 2356678889999998877654431
Q ss_pred -----------------------CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHH
Q 004209 417 -----------------------NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQL 473 (768)
Q Consensus 417 -----------------------~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~l 473 (768)
...++|||||||++|.++|++++..+|++||||||+++. .+.|+++|+.+
T Consensus 59 ~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~-------~~~qt~e~l~~ 131 (410)
T 1kk1_A 59 RCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPC-------PRPQTREHLMA 131 (410)
T ss_dssp ECTTTCCEESSSBCTTTCCBCEEEEEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCS-------SCHHHHHHHHH
T ss_pred cccccccccccccccccCcccccccEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCC-------CChhHHHHHHH
Confidence 168999999999999999999999999999999999873 15799999999
Q ss_pred HHHcCCCeEEEEEecccccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCcccCCCCcccccccCCcchhh
Q 004209 474 IRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLD 553 (768)
Q Consensus 474 l~~lgip~iIVVvNKmDlv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e~~~~~~~~~wy~G~~LLe 553 (768)
+..++++++|||+||||+.+. ++.....+++..+++.... ..++++++||++|+|+.+ |++
T Consensus 132 ~~~~~~~~iivviNK~Dl~~~--~~~~~~~~~i~~~l~~~~~--~~~~~i~vSA~~g~gi~~---------------L~~ 192 (410)
T 1kk1_A 132 LQIIGQKNIIIAQNKIELVDK--EKALENYRQIKEFIEGTVA--ENAPIIPISALHGANIDV---------------LVK 192 (410)
T ss_dssp HHHHTCCCEEEEEECGGGSCH--HHHHHHHHHHHHHHTTSTT--TTCCEEECBTTTTBSHHH---------------HHH
T ss_pred HHHcCCCcEEEEEECccCCCH--HHHHHHHHHHHHHHHhcCc--CCCeEEEeeCCCCCCHHH---------------HHH
Confidence 999999779999999999863 3334445566666654332 357899999999999965 899
Q ss_pred hhhc-cCCCCCCCCCCceeeeEeEEeeC---------CCcEEEEEEEecCcccCCCEEEEccCCe------------eeE
Q 004209 554 AIDS-LRPPPREFSKPLLMPICDVLKSQ---------HGQVSACGKLEAGALRSGLKVLVLPSGE------------VGT 611 (768)
Q Consensus 554 ~L~~-l~~~~~~~~~plr~~I~dv~~~~---------~G~V~v~G~V~sG~L~~Gd~v~i~P~~~------------~~~ 611 (768)
+|.. ++.+.++.+.|++++|+++|.+. .|+| ++|+|.+|+|++||+|.++|.+. .++
T Consensus 193 ~l~~~~~~p~~~~~~~~~~~v~~~f~v~~~g~~~~~~~G~v-~~g~v~~G~l~~gd~v~~~p~~~~~~~g~~~~~~~~~~ 271 (410)
T 1kk1_A 193 AIEDFIPTPKRDPNKPPKMLVLRSFDVNKPGTPPEKLVGGV-LDGSIVQGKLKVGDEIEIRPGVPYEEHGRIKYEPITTE 271 (410)
T ss_dssp HHHHHSCCCCCCTTSCCEEEEEEEECCSCCC----CCCCCE-EEEEEEESCEETTCEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred HHHHhCCCCccccCCCcEEEEEEEEeccCCCccccCCceEE-EEEEEEeCeEeeCCEEEECCCCccccccccccccceeE
Confidence 9865 77777777899999999999763 5778 89999999999999999999753 689
Q ss_pred EEeeeecccccceeccCCceEEEec---ccccccccCCcccccCCCCcceeeEEEEEEEeeCCC---------CCccCCC
Q 004209 612 VHSIERDSQSCSVARAGDNIAVSLQ---GIDVSRVMSGGVLCHPDFPVAIATHLELKVLVLDFA---------PPILIGS 679 (768)
Q Consensus 612 VksI~~~~~~v~~A~aGd~V~l~L~---gi~~~~i~rG~VL~~~~~p~~~~~~F~a~i~vl~~~---------~pI~~G~ 679 (768)
|++|++++.++++|.|||+|++.++ ++...++++|+||++++.+++.++.|+|++.||++. .||..|+
T Consensus 272 v~~i~~~~~~v~~a~aG~~v~~~~~~~~~~~~~d~~~G~vl~~~~~~~~~~~~~~a~~~~l~~~~g~~~~~~~~~l~~g~ 351 (410)
T 1kk1_A 272 IVSLQAGGQFVEEAYPGGLVGVGTKLDPYLTKGDLMAGNVVGKPGKLPPVWDSLRLEVHLLERVVGTEQELKVEPIKRKE 351 (410)
T ss_dssp EEEEEETTEEESEECSSSCEEEEESSCGGGTGGGTTTTCEEECTTCSCCEEEEEEEEEEECCCCC--CCCCSCCCCCTTC
T ss_pred EEEEEECCeEecEEcCCCEEEEEEecCcccchhhccceeEEecCCCCCceeEEEEEEEEEEecccccccccccccCCCCC
Confidence 9999999999999999999999987 566788999999999999888899999999999874 8999999
Q ss_pred eeEEEEeeeeEEEEEEEEEeecccccCcccccCCcccCCCCeEEEEEEeCceEEeecccccCCcceEEEEe----CCcEE
Q 004209 680 QLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVALQEPVCVEEFSNCRALGRAFLRS----SGRTI 755 (768)
Q Consensus 680 ~~~lhig~~~~~a~I~~I~~~lD~~tg~~~k~~p~~L~~gd~a~v~l~l~~pI~~e~~~~~~~lGRfILR~----~g~Tv 755 (768)
++.||+|+.+++|+|..|.. + .|+|+|.+|+|+++++ ||+||+ .+||+
T Consensus 352 ~~~~~~~t~~~~~~v~~~~~--------------------~--~~~l~~~~p~~~~~~~------~~~~~~~~~~~~r~i 403 (410)
T 1kk1_A 352 VLLLNVGTARTMGLVTGLGK--------------------D--EIEVKLQIPVCAEPGD------RVAISRQIGSRWRLI 403 (410)
T ss_dssp EEEEEETTEEEEEEEEEEET--------------------T--EEEEEEEEEEECCTTC------EEEEEEEETTEEEEE
T ss_pred EEEEEEcCCEEeEEEEEecC--------------------C--EEEEEeCCcEEecCCC------EEEEEEecCCCcEEE
Confidence 99999999999999987631 2 6788889999999987 999998 68999
Q ss_pred EEEEEE
Q 004209 756 AVGIVT 761 (768)
Q Consensus 756 gvG~V~ 761 (768)
|+|+|+
T Consensus 404 g~G~i~ 409 (410)
T 1kk1_A 404 GYGIIK 409 (410)
T ss_dssp EEEEEE
T ss_pred EEEEEc
Confidence 999997
No 15
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=100.00 E-value=1.4e-50 Score=452.54 Aligned_cols=341 Identities=27% Similarity=0.397 Sum_probs=278.1
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEee--
Q 004209 338 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS-- 415 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~-- 415 (768)
+..++|+++||+|+|||||+++|++. ..+...+|+++|+|++.++..+..
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g~----------------------------~~~~~~~e~~~giTi~~~~~~~~~~~ 57 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTGV----------------------------WTDRHSEELRRGISIRLGYADCEIRK 57 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHSC----------------------------CCCC-------CCCCCCEEEEEEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhCC----------------------------ccccCcccccCCcEEEeccccccccc
Confidence 35689999999999999999999831 235667788899999887665432
Q ss_pred -------------C--------CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHH
Q 004209 416 -------------K--------NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLI 474 (768)
Q Consensus 416 -------------~--------~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll 474 (768)
. .+.++|||||||++|.++|++++..+|++||||||+++. .++|+++|+.++
T Consensus 58 ~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~-------~~~qt~e~l~~~ 130 (408)
T 1s0u_A 58 CPQCGTYTTKPRCPNCLAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPC-------PQPQTKEHLMAL 130 (408)
T ss_dssp CTTTCCEESSSBCTTSCCBCEEEEEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCS-------SCHHHHHHHHHH
T ss_pred ccccccccccccccccCcccccccEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCC-------CCchhHHHHHHH
Confidence 1 168999999999999999999999999999999999873 257999999999
Q ss_pred HHcCCCeEEEEEecccccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCcccCCCCcccccccCCcchhhh
Q 004209 475 RSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDA 554 (768)
Q Consensus 475 ~~lgip~iIVVvNKmDlv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e~~~~~~~~~wy~G~~LLe~ 554 (768)
..++++++|||+||+|+.+.. +.....+++..+++.... ..++++++||++|+|+.+ |+++
T Consensus 131 ~~l~~~~iivv~NK~Dl~~~~--~~~~~~~~i~~~l~~~~~--~~~~~i~vSA~~g~gi~~---------------L~~~ 191 (408)
T 1s0u_A 131 EILGIDKIIIVQNKIDLVDEK--QAEENYEQIKEFVKGTIA--ENAPIIPISAHHEANIDV---------------LLKA 191 (408)
T ss_dssp HHTTCCCEEEEEECTTSSCTT--TTTTHHHHHHHHHTTSTT--TTCCEEEC------CHHH---------------HHHH
T ss_pred HHcCCCeEEEEEEccCCCCHH--HHHHHHHHHHHHHhhcCC--CCCeEEEeeCCCCCCHHH---------------HHHH
Confidence 999987799999999998642 222233455556554322 357899999999999965 8999
Q ss_pred hhc-cCCCCCCCCCCceeeeEeEEeeC---------CCcEEEEEEEecCcccCCCEEEEccCCe------------eeEE
Q 004209 555 IDS-LRPPPREFSKPLLMPICDVLKSQ---------HGQVSACGKLEAGALRSGLKVLVLPSGE------------VGTV 612 (768)
Q Consensus 555 L~~-l~~~~~~~~~plr~~I~dv~~~~---------~G~V~v~G~V~sG~L~~Gd~v~i~P~~~------------~~~V 612 (768)
|.. ++.+.++.+.|++|+|+++|.+. .|+| ++|+|.+|+|++||.|.++|++. .++|
T Consensus 192 l~~~i~~~~~~~~~~~~~~v~~~f~v~~~g~~~~~~~G~v-~~g~v~~G~l~~gd~v~~~p~~~~~~~~~~~~~~~~~~v 270 (408)
T 1s0u_A 192 IQDFIPTPKRDPDATPRMYVARSFDINKPGTEIKDLKGGV-LGGAIIQGVFKVGDEIEIRPGIKVTEGNKTFWKPLTTKI 270 (408)
T ss_dssp HHHHSCCCCCCTTSCCEEEEEEEECCCCSSCCGGGCCCCE-EEEEEEESCEETTCEEEEEEEEEECCTTCCEEEEEEEEC
T ss_pred HHHhCCCCcccCCCCeEEEEEEEEeecCCCcccccCceeE-EEEEEEECeEecCCEEEEcCCcccccccccccccceeEE
Confidence 865 77777788899999999999764 4778 89999999999999999999742 6899
Q ss_pred EeeeecccccceeccCCceEEEec---ccccccccCCcccccCCCCcceeeEEEEEEEeeCCC---------CCccCCCe
Q 004209 613 HSIERDSQSCSVARAGDNIAVSLQ---GIDVSRVMSGGVLCHPDFPVAIATHLELKVLVLDFA---------PPILIGSQ 680 (768)
Q Consensus 613 ksI~~~~~~v~~A~aGd~V~l~L~---gi~~~~i~rG~VL~~~~~p~~~~~~F~a~i~vl~~~---------~pI~~G~~ 680 (768)
++|++++.++++|.|||+|+|.++ +++..++++|+||++++.+++..+.|+|++.||++. .||..|++
T Consensus 271 ~~i~~~~~~~~~a~~G~~v~~~~~~~~~~~~~~~~~G~vl~~~~~~~~~~~~~~a~~~~l~~~~g~~~~~~~~~l~~g~~ 350 (408)
T 1s0u_A 271 VSLAAGNTILRKAHPGGLIGVGTTLDPYLTKSDALTGSVVGLPGTLPPIREKITIRANLLDRVVGTKEELKIEPLRTGEV 350 (408)
T ss_dssp CEEEETTEEESEECSSSCEEEECSSCGGGTGGGTTTTCEEESTTCSCCEEEEEEEEEEECCCCSSCSSTTCCCCCCTTCE
T ss_pred EEEEECCEEcCEEeCCCeEEEEeccCcccchhhccceeEEECCCCCCceeEEEEEEEEEEeccccccccccccCCCCCCE
Confidence 999999999999999999999987 678889999999999998888899999999999874 89999999
Q ss_pred eEEEEeeeeEEEEEEEEEeecccccCcccccCCcccCCCCeEEEEEEeCceEEeecccccCCcceEEEEe----CCcEEE
Q 004209 681 LECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVALQEPVCVEEFSNCRALGRAFLRS----SGRTIA 756 (768)
Q Consensus 681 ~~lhig~~~~~a~I~~I~~~lD~~tg~~~k~~p~~L~~gd~a~v~l~l~~pI~~e~~~~~~~lGRfILR~----~g~Tvg 756 (768)
+.||+|+.+++|+|..|.. + .++|+|.+|+|+++++ ||+||+ .+||+|
T Consensus 351 ~~~~~~t~~~~~~v~~~~~--------------------~--~~~~~~~~p~~~~~~~------~~~~~~~~~~~~r~ig 402 (408)
T 1s0u_A 351 LMLNIGTATTAGVITSARG--------------------D--IADIKLKLPICAEIGD------RVAISRRVGSRWRLIG 402 (408)
T ss_dssp EEEEETTEEEEEEEEEEET--------------------T--EEEEEEEEEEECCTTC------EEEEEEECSSSEEEEE
T ss_pred EEEEEcCCEEEEEEEEecC--------------------C--EEEEEECCcEEecCCC------EEEEEEecCCCeEEEE
Confidence 9999999999999987631 2 6778889999999987 999998 589999
Q ss_pred EEEEE
Q 004209 757 VGIVT 761 (768)
Q Consensus 757 vG~V~ 761 (768)
+|+|+
T Consensus 403 ~G~i~ 407 (408)
T 1s0u_A 403 YGTIE 407 (408)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 99986
No 16
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=100.00 E-value=4.5e-47 Score=423.52 Aligned_cols=354 Identities=24% Similarity=0.341 Sum_probs=281.0
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEE---
Q 004209 337 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYF--- 413 (768)
Q Consensus 337 ~~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~--- 413 (768)
.++.++|+++|++|+|||||+++|++...... ..+...........+..++.+.+.....+
T Consensus 5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (403)
T 3sjy_A 5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKK----------------LGYAETNIGVCESCKKPEAYVTEPSCKSCGSD 68 (403)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHSCCCCSS----------------SEEEEEEEEECTTSCTTTTEESSSCCGGGTCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCcccccc----------------cCccccceeeccccccccceeccccccccccc
Confidence 34678999999999999999999995311100 00000000000111122233322111110
Q ss_pred --eeCCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccc
Q 004209 414 --DSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDA 491 (768)
Q Consensus 414 --~~~~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDl 491 (768)
......++|||||||++|..+|..++..+|++||||||+.+. ...|+++|+.++..++++++|||+||+|+
T Consensus 69 ~~~~~~~~~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~-------~~~qt~~~~~~~~~~~~~~iivviNK~Dl 141 (403)
T 3sjy_A 69 DEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPF-------PQPQTREHFVALGIIGVKNLIIVQNKVDV 141 (403)
T ss_dssp SCCEEEEEEEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCS-------SCHHHHHHHHHHHHHTCCCEEEEEECGGG
T ss_pred ccccccceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCC-------CcHHHHHHHHHHHHcCCCCEEEEEECccc
Confidence 112368999999999999999999999999999999999874 14799999999999998779999999999
Q ss_pred cccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCcccCCCCcccccccCCcchhhhhhc-cCCCCCCCCCCce
Q 004209 492 VQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDS-LRPPPREFSKPLL 570 (768)
Q Consensus 492 v~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e~~~~~~~~~wy~G~~LLe~L~~-l~~~~~~~~~plr 570 (768)
++ .+...+..+++..+++..+. ..++++++||++|+|+.+ |+++|.. ++.+.+..+.|++
T Consensus 142 ~~--~~~~~~~~~~i~~~l~~~~~--~~~~ii~vSA~~g~gi~~---------------L~~~l~~~l~~~~~~~~~~~~ 202 (403)
T 3sjy_A 142 VS--KEEALSQYRQIKQFTKGTWA--ENVPIIPVSALHKINIDS---------------LIEGIEEYIKTPYRDLSQKPV 202 (403)
T ss_dssp SC--HHHHHHHHHHHHHHHTTSTT--TTCCEEECBTTTTBSHHH---------------HHHHHHHHSCCCCCCTTSCCE
T ss_pred cc--hHHHHHHHHHHHHHHHhhCC--CCCEEEEEECCCCcChHH---------------HHHHHHHhCCCCCCCCCCCcE
Confidence 86 34455566677777765554 357899999999999965 8999865 7777777889999
Q ss_pred eeeEeEEeeC---------CCcEEEEEEEecCcccCCCEEEEccCCe------------eeEEEeeeecccccceeccCC
Q 004209 571 MPICDVLKSQ---------HGQVSACGKLEAGALRSGLKVLVLPSGE------------VGTVHSIERDSQSCSVARAGD 629 (768)
Q Consensus 571 ~~I~dv~~~~---------~G~V~v~G~V~sG~L~~Gd~v~i~P~~~------------~~~VksI~~~~~~v~~A~aGd 629 (768)
++|+++|.+. .|+| ++|+|.+|+|++||+|.++|++. .++|++|++++.++++|.|||
T Consensus 203 ~~v~~~~~v~~~~~~~~~~~G~v-~~g~v~~G~~~~gd~v~~~p~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~a~~G~ 281 (403)
T 3sjy_A 203 MLVIRSFDVNKPGTQFNELKGGV-IGGSIIQGLFKVDQEIKVLPGLRVEKQGKVSYEPIFTKISSIRFGDEEFKEAKPGG 281 (403)
T ss_dssp EEEEEEECCCCTTCCSSSCCCCE-EEEEEEESCEETTCEEEEEEEEEEEETTEEEEEEEEEEEEEEEETTEEESEECSSS
T ss_pred EEEEEEEeecCCCcccccCcCcE-EEEEEEeCEEecCCEEEEeCCcccccccccccccccEEEEEEEECCEEcCEEeCCC
Confidence 9999999753 4788 89999999999999999999875 589999999999999999999
Q ss_pred ceEEEec---ccccccccCCcccccCCCCcceeeEEEEEEEeeCC---------CCCccCCCeeEEEEeeeeEEEEEEEE
Q 004209 630 NIAVSLQ---GIDVSRVMSGGVLCHPDFPVAIATHLELKVLVLDF---------APPILIGSQLECHIHHAKEAARIVKI 697 (768)
Q Consensus 630 ~V~l~L~---gi~~~~i~rG~VL~~~~~p~~~~~~F~a~i~vl~~---------~~pI~~G~~~~lhig~~~~~a~I~~I 697 (768)
+|+|.|+ ++...++++||||++++.+++.++.|+|++.||++ +.||.+|+++.||+|+.+++|+|..+
T Consensus 282 ~v~~~l~~~~~~~~~d~~~G~vl~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~gt~~~~~~v~~~ 361 (403)
T 3sjy_A 282 LVAIGTYLDPSLTKADNLLGSIITLADAEVPVLWNIRIKYNLLERVVGAKEMLKVDPIRAKETLMLSVGSSTTLGIVTSV 361 (403)
T ss_dssp CEEEEESSCHHHHGGGTTTTCEEEETTCCCCEEEEEEEEEEECSBCTTCSSCCBCCCCCTTCEEEEEETTEEEEEEEEEE
T ss_pred EEEEEeccccccchhhhccccEEeCCCCCCcceeEEEEEEEEEeccccccccccCCCCCCCCEEEEEECccEEEEEEEEe
Confidence 9999987 67778999999999999988889999999999986 68999999999999999999999866
Q ss_pred EeecccccCcccccCCcccCCCCeEEEEEEeCceEEeecccccCCcc-eEEE-EeCC---cEEEEEEEE
Q 004209 698 TSLLDTKTGKVTKKSPRCLTAKQSAIVEVALQEPVCVEEFSNCRALG-RAFL-RSSG---RTIAVGIVT 761 (768)
Q Consensus 698 ~~~lD~~tg~~~k~~p~~L~~gd~a~v~l~l~~pI~~e~~~~~~~lG-RfIL-R~~g---~TvgvG~V~ 761 (768)
.. + .++|+|.+|+|+... . ||+| |+.+ |++|+|.|+
T Consensus 362 ~~--------------------~--~~~~~l~~p~~~~~g------~~r~~i~r~~~~~~r~~g~g~i~ 402 (403)
T 3sjy_A 362 KK--------------------D--EIEVELRRPVAVWSN------NIRTVISRQIAGRWRMIGWGLVE 402 (403)
T ss_dssp CS--------------------S--EEEEEEEEEEECCSS------SCEEEEEEEETTEEEEEEEEEEE
T ss_pred cC--------------------c--eEEEEeCCcEeeccC------CEEEEEEEEeCCcEEEEEEEEEE
Confidence 21 1 588889999999874 4 7987 6544 899999985
No 17
>3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A; translation termination, peptide release, PTC, P biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo sapiens}
Probab=100.00 E-value=1e-38 Score=324.58 Aligned_cols=200 Identities=28% Similarity=0.543 Sum_probs=189.3
Q ss_pred CCCCceeeeEeEEeeCCCcEEEEEEEecCcccCCCEEEEccCCeeeEEEeeeecccccceeccCCceEEEeccccccccc
Q 004209 565 FSKPLLMPICDVLKSQHGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVM 644 (768)
Q Consensus 565 ~~~plr~~I~dv~~~~~G~V~v~G~V~sG~L~~Gd~v~i~P~~~~~~VksI~~~~~~v~~A~aGd~V~l~L~gi~~~~i~ 644 (768)
.++||+|||+++|+ ..|++ ++|+|++|+|++||+|.++|++..++|++|++++.++++|.|||+|+|+|+|++..+++
T Consensus 3 ~~~p~rl~v~~v~~-g~G~v-~~G~v~~G~i~~Gd~v~i~P~~~~~~V~~I~~~~~~~~~A~aGd~V~l~L~gi~~~di~ 80 (204)
T 3e1y_E 3 LGSPIRLPIVDKYK-DMGTV-VLGKLESGSICKGQQLVMMPNKHNVEVLGILSDDVETDTVAPGENLKIRLKGIEEEEIL 80 (204)
T ss_dssp ----CBEEEEEEEE-SSSEE-EEEECCBSCEESSCCEEETTTTEEEEEEEECSSSSCBSEECTTSEEEEEEEESSSSCCC
T ss_pred CCCCEEEEEEEEEc-CCCEE-EEEEEecCEEECCCEEEECCCCCEEEEEEEEECCEEeEEECCCCEEEEEEcCCCHHHCc
Confidence 46899999999998 68998 89999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCCCcceeeEEEEEEEeeCCCCCccCCCeeEEEEeeeeEEEEEEEEEeecccccCcccccCCcccCCCCeEEE
Q 004209 645 SGGVLCHPDFPVAIATHLELKVLVLDFAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIV 724 (768)
Q Consensus 645 rG~VL~~~~~p~~~~~~F~a~i~vl~~~~pI~~G~~~~lhig~~~~~a~I~~I~~~lD~~tg~~~k~~p~~L~~gd~a~v 724 (768)
+|+||++++.+++.++.|+|++.||+++.||.+|+++.+|+|+.+++|+|.+|.+++|.+||+..+.+|++|++||.|.|
T Consensus 81 rG~vl~~~~~~~~~~~~f~a~v~~l~~~~~i~~g~~~~l~~~t~~~~~~i~~i~~~id~~tg~~~~~~~~~l~~gd~a~v 160 (204)
T 3e1y_E 81 PGFILCDPNNLCHSGRTFDAQIVIIEHKSIICPGYNAVLHIHTCIEEVEITALICLVDKKSGEKSKTRPRFVKQDQVCIA 160 (204)
T ss_dssp TTCEEBCSSSCCCCCSEEEEEEECCSCCSCCCTTEEEEEESSSCEEEEEEEEECCCCCSSTTCCCSSCCSCCCTTCEEEE
T ss_pred cceEEECCCCCCchhEEEEEEEEEeCCCCccCCCceEEEEEeCCEEEEEEEEEEEEEcCCCCCEeccCCcCcCCCCEEEE
Confidence 99999999988888999999999999988999999999999999999999999999999999988888999999999999
Q ss_pred EEEeCceEEeecccccCCcceEEEEeCCcEEEEEEEEeeccc
Q 004209 725 EVALQEPVCVEEFSNCRALGRAFLRSSGRTIAVGIVTRIIED 766 (768)
Q Consensus 725 ~l~l~~pI~~e~~~~~~~lGRfILR~~g~TvgvG~V~~v~~~ 766 (768)
+|++.+|+|+++|++++.+|||+||+.|+|+|+|+|+++.+.
T Consensus 161 ~l~~~~pi~~e~~~~~~~~Grfilrd~~~Tva~G~V~~v~~~ 202 (204)
T 3e1y_E 161 RLRTAGTICLETFKDFPQMGRFTLRDEGKTIAIGKVLKLVPE 202 (204)
T ss_dssp EEEESSCCCCCCTTSSGGGTEEEEECSSSCCEEEEEEEECC-
T ss_pred EEEECCeEEEEEcccCcCCCCEEEEECCcEEEEEEEEEEecC
Confidence 999999999999999999999999999999999999999865
No 18
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=100.00 E-value=7.2e-33 Score=321.67 Aligned_cols=267 Identities=30% Similarity=0.422 Sum_probs=201.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeC--
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK-- 416 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~-- 416 (768)
..+||+|+||+|||||||+++|++..+.+....+ -.+.+|....|+++|+|+......+.+.
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~----------------~~~~~D~~~~ErerGITI~~~~~~~~~~~~ 68 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREK----------------REQLLDTLDVERERGITVKMQAVRMFYKAK 68 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHHTC---------------------------------------CCCCSEEEEEECT
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccCCcccccc----------------cccccccchhhhcccceeeeeEEEEEEEcC
Confidence 4679999999999999999999987776654321 1356788899999999998665555443
Q ss_pred ---CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccc
Q 004209 417 ---NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ 493 (768)
Q Consensus 417 ---~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~ 493 (768)
.+.++|||||||.+|..++.+++..+|++||||||++|. ..|+.+++..+...++| +|+|+||||+.+
T Consensus 69 dg~~~~inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv--------~~qt~~~~~~a~~~~ip-iIvviNKiDl~~ 139 (600)
T 2ywe_A 69 DGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGI--------EAQTVANFWKAVEQDLV-IIPVINKIDLPS 139 (600)
T ss_dssp TSCEEEEEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTTBC--------CHHHHHHHHHHHHTTCE-EEEEEECTTSTT
T ss_pred CCCeEEEEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCCCc--------cHHHHHHHHHHHHCCCC-EEEEEeccCccc
Confidence 378999999999999999999999999999999999884 57999999999999999 899999999986
Q ss_pred cchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCcccCCCCcccccccCCcchhhhh-hccCCCCCCCCCCceee
Q 004209 494 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAI-DSLRPPPREFSKPLLMP 572 (768)
Q Consensus 494 ~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e~~~~~~~~~wy~G~~LLe~L-~~l~~~~~~~~~plr~~ 572 (768)
.+ .+.+.+++...+ ++. ..+++++||++|.|+.+ |+++| ..++.|..+.+.|+++.
T Consensus 140 a~---~~~v~~el~~~l---g~~--~~~vi~vSAktg~GI~~---------------Lle~I~~~lp~p~~~~~~pl~~l 196 (600)
T 2ywe_A 140 AD---VDRVKKQIEEVL---GLD--PEEAILASAKEGIGIEE---------------ILEAIVNRIPPPKGDPQKPLKAL 196 (600)
T ss_dssp CC---HHHHHHHHHHTS---CCC--GGGCEECBTTTTBSHHH---------------HHHHHHHHSCCCCCCTTSCCEEE
T ss_pred cC---HHHHHHHHHHhh---CCC--cccEEEEEeecCCCchH---------------HHHHHHHhcccccccccCCccee
Confidence 43 334445554443 442 23579999999999965 88887 66777777778999999
Q ss_pred eEeEEeeC-CCcEEEEEEEecCcccCCCEEEEccCCeeeEEEeeeec---ccccceeccCCceEEEeccc-ccccccCCc
Q 004209 573 ICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERD---SQSCSVARAGDNIAVSLQGI-DVSRVMSGG 647 (768)
Q Consensus 573 I~dv~~~~-~G~V~v~G~V~sG~L~~Gd~v~i~P~~~~~~VksI~~~---~~~v~~A~aGd~V~l~L~gi-~~~~i~rG~ 647 (768)
|.+++..+ .|++ ++|+|.+|+|++||.|+++|.+...+|+.|... ..++++|.|||++.+. .|+ +..++++||
T Consensus 197 V~~~~~d~~~G~v-~~~rV~sG~l~~Gd~I~~~~~~~~~~v~~i~~~~~~~~~v~~~~aGdi~~v~-~gi~~~~~~~~GD 274 (600)
T 2ywe_A 197 IFDSYYDPYRGAV-AFVRIFDGEVKPGDKIMLMSTGKEYEVTEVGAQTPKMTKFDKLSAGDVGYIA-ASIKDVRDIRIGD 274 (600)
T ss_dssp EEEEEEETTTEEE-EEEEEEESEECTTCEEEETTTTEEEECCEEEEESSSEEEESCEETTCEEEEE-SSCCCTTSSCTTC
T ss_pred EEEEeecccceEE-EEEEEEeCEEecCCEEEeccccceEeeecccccCCCceECCEEecCceeeee-ccccchhhccCCC
Confidence 99999988 8988 899999999999999999999988888888764 4678999999976664 566 467899999
Q ss_pred ccccCCCC
Q 004209 648 VLCHPDFP 655 (768)
Q Consensus 648 VL~~~~~p 655 (768)
+|+.++.|
T Consensus 275 tl~~~~~~ 282 (600)
T 2ywe_A 275 TITHAKNP 282 (600)
T ss_dssp EEEESSSC
T ss_pred EEEeCCCc
Confidence 99987654
No 19
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=100.00 E-value=6.5e-33 Score=320.34 Aligned_cols=276 Identities=25% Similarity=0.306 Sum_probs=202.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCe
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 418 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~ 418 (768)
+..||+|+||+|||||||+.+|++..+.+..... ...+.. .-...+|..+.|++|||||..+...|.++++
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~-------V~~~~~--~~~~~~D~~~~EreRGITI~s~~~~~~~~~~ 100 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGS-------VKARKA--ARHATSDWMAMERERGISVTTSVMQFPYRDR 100 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHH-------HHHC----------------------CTTTEEEEEETTE
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccce-------eecCcc--ccccccCChHHHHHCCCcEeeceEEEEECCE
Confidence 4689999999999999999999999888754321 111110 1123689999999999999999999999999
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccchhh
Q 004209 419 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 498 (768)
Q Consensus 419 ~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~e~ 498 (768)
.|+|||||||.+|..++.++++.+|.||+||||..|+ +.||+..+.++...++| .|++|||||+...+.
T Consensus 101 ~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV--------~~qT~~v~~~a~~~~lp-~i~fINK~Dr~~ad~-- 169 (548)
T 3vqt_A 101 VVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGV--------EAQTRKLMDVCRMRATP-VMTFVNKMDREALHP-- 169 (548)
T ss_dssp EEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBS--------CHHHHHHHHHHHHTTCC-EEEEEECTTSCCCCH--
T ss_pred EEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCCc--------ccccHHHHHHHHHhCCc-eEEEEecccchhcch--
Confidence 9999999999999999999999999999999999984 78999999999999999 689999999976433
Q ss_pred HHHHHHHHhHHHhh------------------------------------------------------------------
Q 004209 499 FDSIKVQLGTFLRS------------------------------------------------------------------ 512 (768)
Q Consensus 499 ~~~i~~el~~~lk~------------------------------------------------------------------ 512 (768)
..+.+++...|..
T Consensus 170 -~~~~~~i~~~l~~~~~p~~~Pig~~~~f~g~vdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (548)
T 3vqt_A 170 -LDVMADIEQHLQIECAPMTWPIGMGSSFKGTYDLLHKQLHLFSATHGGRIQSGIVIHGADDPQLDEYLGDQAEQLRMDL 248 (548)
T ss_dssp -HHHHHHHHHHHTSEEEESEEEESCGGGCCEEEETTTTEEEECC-------CCCEECCSTTCTHHHHHHGGGHHHHHHHH
T ss_pred -hHhhhhhhhhcCCceEeEEeeeecCCcccceEeeeeeeeeecccccCCcccccccccccchHHHHHHHHHHHHHhhhHH
Confidence 2333333333210
Q ss_pred -----cC--------CCCCCCcEEEeecccCCCcccCCCCcccccccCCcchhhhh-hccCCCCC---------CCCCCc
Q 004209 513 -----CG--------FKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAI-DSLRPPPR---------EFSKPL 569 (768)
Q Consensus 513 -----~g--------~~~~~i~~IpVSA~tG~gI~e~~~~~~~~~wy~G~~LLe~L-~~l~~~~~---------~~~~pl 569 (768)
.+ .....+|++..||++|.|+.. ||++| ..+|.|.. +.+.||
T Consensus 249 ~l~~~~~~~~~~e~~~~g~~~PV~~gSA~~~~Gv~~---------------LLd~iv~~~PsP~~~~~~~~~~~~~~~p~ 313 (548)
T 3vqt_A 249 ALLEEAGTPFDEERYLKGELTPVFFGSAINNFGVRE---------------MLDMFVEFAPGPQPRPAATRVVEPGEEAF 313 (548)
T ss_dssp HHHHHHCCCCCHHHHHTTSEEEEEECBGGGTBSHHH---------------HHHHHHHHSCCSCCEEBSSSEECTTCSSC
T ss_pred HHHhhccCchhHHHHHhCCcceeeecccccCcCHHH---------------HHHHHHHhCCCCCCccccccccCCCCcCc
Confidence 00 001225678889999999864 99998 45565532 235788
Q ss_pred eeeeEeEEee---C-CCcEEEEEEEecCcccCCCEEEEccCCeeeEEEeeeec----ccccceeccCCceEEEecccccc
Q 004209 570 LMPICDVLKS---Q-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERD----SQSCSVARAGDNIAVSLQGIDVS 641 (768)
Q Consensus 570 r~~I~dv~~~---~-~G~V~v~G~V~sG~L~~Gd~v~i~P~~~~~~VksI~~~----~~~v~~A~aGd~V~l~L~gi~~~ 641 (768)
...|++++.. + .|.+ +++||.+|+|+.|++|+....+...+|..|... ..++++|.|||+|+|. |+ .
T Consensus 314 ~a~vfKi~~~~~~~~~Grl-a~~RV~sG~l~~g~~v~~~~~~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai~--gl--~ 388 (548)
T 3vqt_A 314 TGVVFKIQANMDKAHRDRM-AFLRICSGTFTRGMRLKHHRTGKDVTVANATIFMAQDRTGVEEAFPGDIIGIP--NH--G 388 (548)
T ss_dssp EEEEEEEECC-------CE-EEEEEEESCEETTCEEEETTTTEEEECTTCEECCCSSCCSSCEECTTCEEEEE--CS--S
T ss_pred eEEEEEEEccCCcCCCCeE-EEEEEecceecCCCEEEeeccccccccchhhhhccccccccCEEecCCEEEec--CC--c
Confidence 8888888765 4 8888 899999999999999999988888888887753 4689999999999886 54 4
Q ss_pred cccCCcccccCCCC
Q 004209 642 RVMSGGVLCHPDFP 655 (768)
Q Consensus 642 ~i~rG~VL~~~~~p 655 (768)
+++.||+|++.+.+
T Consensus 389 ~~~~GDTl~~~~~~ 402 (548)
T 3vqt_A 389 TIKIGDTFTESKEV 402 (548)
T ss_dssp CCCTTCEEESSSSC
T ss_pred cCccCCEecCCCCc
Confidence 67889999987653
No 20
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=100.00 E-value=5.4e-32 Score=314.79 Aligned_cols=267 Identities=25% Similarity=0.391 Sum_probs=198.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeC--
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK-- 416 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~-- 416 (768)
...||+|+||+|||||||+++|++..+.+....+ -...+|..+.|+++|+|+......+.+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~----------------~~~~~D~~~~ErerGiTi~~~~~~~~~~~~ 66 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREM----------------EAQVLDSMDLERERGITIKAQSVTLDYKAS 66 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC------------------------------------------CEEEEEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccc----------------cccccccchhhhcccceeeeeEEEEEEecC
Confidence 4579999999999999999999987777654321 1356788899999999998777766554
Q ss_pred ---CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccc
Q 004209 417 ---NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ 493 (768)
Q Consensus 417 ---~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~ 493 (768)
.+.++|||||||.+|..++.+++..+|++||||||++|. ..|+.+++..+...++| +|+|+||+|+.+
T Consensus 67 ~g~~~~l~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv--------~~qt~~~~~~~~~~~ip-iIvViNKiDl~~ 137 (599)
T 3cb4_D 67 DGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGV--------EAQTLANCYTAMEMDLE-VVPVLNKIDLPA 137 (599)
T ss_dssp TSCEEEEEEEECCCCGGGHHHHHHHHHHCSEEEEEEETTTCC--------CTHHHHHHHHHHHTTCE-EEEEEECTTSTT
T ss_pred CCCeEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCC--------CHHHHHHHHHHHHCCCC-EEEeeeccCccc
Confidence 478999999999999999999999999999999999884 57999999999999998 899999999986
Q ss_pred cchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCcccCCCCcccccccCCcchhhhh-hccCCCCCCCCCCceee
Q 004209 494 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAI-DSLRPPPREFSKPLLMP 572 (768)
Q Consensus 494 ~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e~~~~~~~~~wy~G~~LLe~L-~~l~~~~~~~~~plr~~ 572 (768)
.+ .+++.+++...+ ++. ..+++++||++|.|+.+ |++.| ..++.|..+.+.|+++.
T Consensus 138 a~---~~~v~~ei~~~l---g~~--~~~vi~vSAktg~GI~~---------------Ll~~I~~~lp~p~~~~~~p~~al 194 (599)
T 3cb4_D 138 AD---PERVAEEIEDIV---GID--ATDAVRCSAKTGVGVQD---------------VLERLVRDIPPPEGDPEGPLQAL 194 (599)
T ss_dssp CC---HHHHHHHHHHHT---CCC--CTTCEEECTTTCTTHHH---------------HHHHHHHHSCCCCCCTTSCCEEE
T ss_pred cc---HHHHHHHHHHHh---CCC--cceEEEeecccCCCchh---------------HHHHHhhcCCCccccccCCceee
Confidence 43 334445555443 443 23579999999999965 88887 56777777778999999
Q ss_pred eEeEEeeC-CCcEEEEEEEecCcccCCCEEEEccCCeeeEEEeeeec---ccccceeccCCceEEEeccc-ccccccCCc
Q 004209 573 ICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERD---SQSCSVARAGDNIAVSLQGI-DVSRVMSGG 647 (768)
Q Consensus 573 I~dv~~~~-~G~V~v~G~V~sG~L~~Gd~v~i~P~~~~~~VksI~~~---~~~v~~A~aGd~V~l~L~gi-~~~~i~rG~ 647 (768)
|.+++..+ .|.+ ++|+|.+|+|++||++.++|.+...+|..|... ..+++.+.|||++.+ +.|+ +..++++||
T Consensus 195 I~d~~~d~~~G~v-~~~rV~sG~l~~Gd~v~~~~~~~~~~v~~i~~~~~~~~~~~~~~aGdi~~~-~~gi~~~~~~~~GD 272 (599)
T 3cb4_D 195 IIDSWFDNYLGVV-SLIRIKNGTLRKGDKVKVMSTGQTYNADRLGIFTPKQVDRTELKCGEVGWL-VCAIKDIHGAPVGD 272 (599)
T ss_dssp EEEEEEETTTEEE-EEEEEEESCEESSCEEEETTTCCEEECCEEEEESSSEEECSEECTTCEEEE-ECCCSSGGGSCTTC
T ss_pred eeeccccccccEE-EEEEEEeCEEecCCEEEeccccceeEEeeeeeccCCceECCEEcCCCeeEe-eccccccccCccCC
Confidence 99999988 8988 899999999999999999999988888888763 467899999996555 4565 467899999
Q ss_pred ccccCCCC
Q 004209 648 VLCHPDFP 655 (768)
Q Consensus 648 VL~~~~~p 655 (768)
+|++++.|
T Consensus 273 tl~~~~~~ 280 (599)
T 3cb4_D 273 TLTLARNP 280 (599)
T ss_dssp EEEESSSC
T ss_pred EeeecCCc
Confidence 99987654
No 21
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.97 E-value=5.6e-30 Score=294.48 Aligned_cols=277 Identities=25% Similarity=0.328 Sum_probs=209.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCe
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 418 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~ 418 (768)
..++|+|+||+|||||||+++|++..+.+..... ...++. ......|....|+++|+|+......+.+.++
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~-------v~~~~~--~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 82 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGT-------IKSRKA--ARHATSDWMELEKQRGISVTTSVMQFPYKDY 82 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHH-------HHTC------CCHHHHHHHHHHHCCSSSSSEEEEEETTE
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCccccee-------eecccc--ccceecccchhhhcCCeeEEEeEEEEEeCCE
Confidence 4579999999999999999999987776632211 011100 0112456778889999999999999999999
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccch-h
Q 004209 419 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK-D 497 (768)
Q Consensus 419 ~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~-e 497 (768)
.++|||||||.+|...+..++..+|++|+|||++.+. ..++..++..+...++| +|+|+||+|+...+. +
T Consensus 83 ~i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g~--------~~~t~~~~~~~~~~~iP-iivviNK~Dl~~~~~~~ 153 (528)
T 3tr5_A 83 LINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGV--------EPRTIKLMEVCRLRHTP-IMTFINKMDRDTRPSIE 153 (528)
T ss_dssp EEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCS--------CHHHHHHHHHHHTTTCC-EEEEEECTTSCCSCHHH
T ss_pred EEEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCCC--------CHHHHHHHHHHHHcCCC-EEEEEeCCCCccccHHH
Confidence 9999999999999999999999999999999999874 57899999999999998 899999999975322 1
Q ss_pred hHHHHHHHHhHHHhhc----C------------------C----------------------------------------
Q 004209 498 RFDSIKVQLGTFLRSC----G------------------F---------------------------------------- 515 (768)
Q Consensus 498 ~~~~i~~el~~~lk~~----g------------------~---------------------------------------- 515 (768)
.++++.+.+....... + |
T Consensus 154 ~l~ei~~~l~~~~~~~~~pig~~~~f~gv~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~e~~~l~ 233 (528)
T 3tr5_A 154 LLDEIESILRIHCAPVTWPIGMGKYFKGIYHLIEDAIYLYQPGKHERVGESERIEGINNPELDKKLGDLASELRNEIELV 233 (528)
T ss_dssp HHHHHHHHHCCEEEESEEEESCGGGCCEEEETTTTEEEECCTTSSSSTTCSCEEECTTCHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCCCceeeecccccCCceeEEEEeecCEEEEecCCCCCcccccccccccchHHHHHHHHHHHHHHhhhcchh
Confidence 2222322221100000 0 0
Q ss_pred -------------CCCCCcEEEeecccCCCcccCCCCcccccccCCcchhhhhhc-cCCCCCC---------CCCCceee
Q 004209 516 -------------KDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDS-LRPPPRE---------FSKPLLMP 572 (768)
Q Consensus 516 -------------~~~~i~~IpVSA~tG~gI~e~~~~~~~~~wy~G~~LLe~L~~-l~~~~~~---------~~~plr~~ 572 (768)
....+|++++||++|.|+.+ ||++|.. +|+|... .+.||...
T Consensus 234 ~~~~~~~~~~~~~~~~~~PV~~gSA~~~~GV~~---------------Lld~i~~~~p~p~~~~~~~~~~~~~~~~~~~~ 298 (528)
T 3tr5_A 234 KGASHPFEREGYLKGELTPIFFGSAINNFGVGE---------------LLDAFVKEAPPPQGRETNSRLVKPEEEKFSGF 298 (528)
T ss_dssp HHHSCCCCHHHHHTTSEEEEEECBGGGTBSHHH---------------HHHHHHHHSCCCCCBCBSSSCBCTTSSSCEEE
T ss_pred hhhhhHHHHHHHhcCceeEEEeccccCCccHHH---------------HHHHHHHhCCCCCcccccceeeCCCcccceeE
Confidence 01123788999999999965 8998844 5544321 24788888
Q ss_pred eEeEEe--eC--CCcEEEEEEEecCcccCCCEEEEccCCeeeEEEeeee----cccccceeccCCceEEEeccccccccc
Q 004209 573 ICDVLK--SQ--HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIER----DSQSCSVARAGDNIAVSLQGIDVSRVM 644 (768)
Q Consensus 573 I~dv~~--~~--~G~V~v~G~V~sG~L~~Gd~v~i~P~~~~~~VksI~~----~~~~v~~A~aGd~V~l~L~gi~~~~i~ 644 (768)
|+++.. .+ +|++ +++||.+|+|+.||.|++.+.++..+|.+|.. .+.++++|.|||+|+|. ++ .+++
T Consensus 299 VFKi~~~~dp~~~g~l-~~~RV~sG~l~~g~~v~~~~~~~~~rv~~~~~~~~~~~~~v~~a~aGdI~~~~--~l--~~~~ 373 (528)
T 3tr5_A 299 VFKIQANMDPGHRDRI-AFLRIASGQYQKGMKAYHVRLKKEIQINNALTFMAGKRENAEEAWPGDIIGLH--NH--GTIQ 373 (528)
T ss_dssp EEEEEECCC-CCCCEE-EEEEEEESCEETTEEEEETTTTEEEEESSCBCCBTTCSSCCSEECTTCEEEEE--ES--SSCC
T ss_pred EEEEecccCccCCceE-EEEEEecCeEcCCCEEEecCCCceEEEeeeEEEeCCCeeECCEECCCCEEEEc--CC--CCCc
Confidence 888874 33 6888 89999999999999999999999999999886 46789999999998875 43 4578
Q ss_pred CCcccccCC
Q 004209 645 SGGVLCHPD 653 (768)
Q Consensus 645 rG~VL~~~~ 653 (768)
.||+|++..
T Consensus 374 ~GDtl~~~~ 382 (528)
T 3tr5_A 374 IGDTFTQGE 382 (528)
T ss_dssp TTCEEESSC
T ss_pred cCCEEcCCC
Confidence 899999743
No 22
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.97 E-value=2.7e-32 Score=320.79 Aligned_cols=272 Identities=24% Similarity=0.321 Sum_probs=211.8
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCeE
Q 004209 340 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 419 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~~ 419 (768)
..||+|+||+|||||||+.+|++..+.+....- ... -...+|..+.|++||+|+..+...|.++++.
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~---------v~~----g~~~~D~~~~EreRGITI~s~~~~~~~~~~~ 68 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGS---------VDK----GTTRTDNTLLERQRGITIQTGITSFQWENTK 68 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSS---------CCC----SCCSTTCSTTHHHHSSCSSCCCCCCBCSSCB
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccc---------ccc----CCcccCCcHHHHhCCCcEEeeeEEEEECCEE
Confidence 478999999999999999999999888754310 001 1236899999999999999999999999999
Q ss_pred EEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccchhh-
Q 004209 420 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR- 498 (768)
Q Consensus 420 i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~e~- 498 (768)
|+|||||||.+|..++.++++.+|+||+||||..|+ +.||+.++.++...++| .|++|||||+...+...
T Consensus 69 iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~GV--------~~qT~~v~~~a~~~~lp-~i~~INKmDr~~a~~~~~ 139 (638)
T 3j25_A 69 VNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGV--------QAQTRILFHALRKMGIP-TIFFINKIDQNGIDLSTV 139 (638)
T ss_dssp CCCEECCCSSSTHHHHHHHHTTCSEEECCEESSCTT--------CSHHHHHHHHHHHHTCS-CEECCEECCSSSCCSHHH
T ss_pred EEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCCCC--------cHHHHHHHHHHHHcCCC-eEEEEeccccccCCHHHH
Confidence 999999999999999999999999999999999984 78999999999999999 58899999987644322
Q ss_pred HHHHHHHHh--------------------------------------HHHhhcCC--------------CCCCCcEEEee
Q 004209 499 FDSIKVQLG--------------------------------------TFLRSCGF--------------KDASLTWIPLS 526 (768)
Q Consensus 499 ~~~i~~el~--------------------------------------~~lk~~g~--------------~~~~i~~IpVS 526 (768)
++++.+.+. .++....+ ...-+|++..|
T Consensus 140 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gS 219 (638)
T 3j25_A 140 YQDIKEKLSAEIVIKQKVELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGS 219 (638)
T ss_dssp HHHHHHTTCCCCCCCCCCCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCC
T ss_pred HHHHHHHhCCCccccceeEeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccc
Confidence 222222110 00100000 01235678889
Q ss_pred cccCCCcccCCCCcccccccCCcchhhhh-hccCCCCCCCCCCceeeeEeEEeeC-CCcEEEEEEEecCcccCCCEEEEc
Q 004209 527 ALENQNLVTAPDDGRLLSWYKGPCLLDAI-DSLRPPPREFSKPLLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVL 604 (768)
Q Consensus 527 A~tG~gI~e~~~~~~~~~wy~G~~LLe~L-~~l~~~~~~~~~plr~~I~dv~~~~-~G~V~v~G~V~sG~L~~Gd~v~i~ 604 (768)
|+++.|+.. ||++| ..++.|......||.+.|.++...+ .|.+ +++||.+|+|+.||.|++.
T Consensus 220 a~~~~Gv~~---------------LLd~i~~~~p~p~~~~~~~~~~~Vfk~~~d~~~G~l-a~~RV~sG~l~~g~~v~~~ 283 (638)
T 3j25_A 220 AKSNIGIDN---------------LIEVITNKFYSSTHRGPSELCGNVFKIEYTKKRQRL-AYIRLYSGVLHLRDSVRVS 283 (638)
T ss_dssp STTCCSHHH---------------HHHHHHHSCCCSGGGSCCCCCBEEBCCCCCSTTCCC-CBCCBSSBCCCSCCCSSSC
T ss_pred cccCCCchh---------------HhhhhhccccCcccchhhhhcceeeeeeeeccCceE-EEEEEEcCcccCCCccccc
Confidence 999999854 99998 5677777777889999999988888 8988 8999999999999999876
Q ss_pred cCCeeeEEEeeee----cccccceeccCCceEEEecccccccccCCcccccCCCC
Q 004209 605 PSGEVGTVHSIER----DSQSCSVARAGDNIAVSLQGIDVSRVMSGGVLCHPDFP 655 (768)
Q Consensus 605 P~~~~~~VksI~~----~~~~v~~A~aGd~V~l~L~gi~~~~i~rG~VL~~~~~p 655 (768)
..+ ..+|..+.. ...++++|.||++|+|. | ..++.|+++++...+
T Consensus 284 ~~~-~~~v~~l~~~~g~~~~~v~~a~aGdIv~i~--g---~~~~~~~tl~d~~~~ 332 (638)
T 3j25_A 284 EKE-KIKVTEMYTSINGELCKIDRAYSGEIVILQ--N---EFLKLNSVLGDTKLL 332 (638)
T ss_dssp CCC-CSSBCCCCSSCCCCBSCCCTTBCCCCSCCC--S---SSCSSEECSSSSSSG
T ss_pred cCc-ceeEEeeecccccccccccccccceEEEEe--c---cccccCceecCCCCc
Confidence 544 345555543 35689999999999774 3 346678888876543
No 23
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.97 E-value=3.9e-30 Score=305.93 Aligned_cols=272 Identities=28% Similarity=0.362 Sum_probs=194.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeC--
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK-- 416 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~-- 416 (768)
+..||+|+||+|||||||+.+|++..+.+.... . ..++ ...+|..+.|++|||||..+...+.+.
T Consensus 12 ~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g--~------v~~~-----~~~~D~~~~E~eRGITI~s~~~s~~~~~~ 78 (709)
T 4fn5_A 12 RYRNIGICAHVDAGKTTTTERVLFYTGVNHKLG--E------VHDG-----AATTDWMVQEQERGITITSAAVTTFWKGS 78 (709)
T ss_dssp GEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC-------------------------------------CCEEEEEECCT
T ss_pred HCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCc--e------ecCC-----CccCCChHHHHHcCCeEEeeeEEEEeccC
Confidence 468999999999999999999998776653211 0 0011 235899999999999999888877664
Q ss_pred -----CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccc
Q 004209 417 -----NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDA 491 (768)
Q Consensus 417 -----~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDl 491 (768)
++.|+|||||||.+|..++.++++.+|+||+||||.+|+ +.||+..++++...++| .|++|||||+
T Consensus 79 ~~~~~~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV--------~~qT~~v~~~a~~~~lp-~i~~iNKiDr 149 (709)
T 4fn5_A 79 RGQYDNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGV--------EPQSETVWRQANKYGVP-RIVYVNKMDR 149 (709)
T ss_dssp TSCSCCEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCS--------CHHHHHHHHHHHHHTCC-EEEEEECSSS
T ss_pred cCCCCCEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCC--------chhHHHHHHHHHHcCCC-eEEEEccccc
Confidence 689999999999999999999999999999999999985 78999999999999999 7899999998
Q ss_pred cccchhhHHHHHHHHhHHHhh-----------------------------------------------------------
Q 004209 492 VQYSKDRFDSIKVQLGTFLRS----------------------------------------------------------- 512 (768)
Q Consensus 492 v~~s~e~~~~i~~el~~~lk~----------------------------------------------------------- 512 (768)
...+. ..+.+++...+..
T Consensus 150 ~~a~~---~~~~~ei~~~l~~~~~~~~~pi~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 226 (709)
T 4fn5_A 150 QGANF---LRVVEQIKKRLGHTPVPVQLAIGAEENFVGQVDLIKMKAIYWNDDDKGMTYREEEIPAELKDLAEEWRSSMV 226 (709)
T ss_dssp TTCCH---HHHHHHHHHHHCSCEEESEEEESSSTTCCEEEETTTTEEEEEEC--CCCEEEECCCCHHHHHHHHHHHHHHH
T ss_pred cCccH---HHHHHHhhhhcccceeeeecccCchhccceEEEEeeeeEEEeecccCCceeccccccHHHHHHHHHHHHHHH
Confidence 75322 2222222222110
Q ss_pred -----------------c--------------CCCCCCCcEEEeecccCCCcccCCCCcccccccCCcchhhhh-hccCC
Q 004209 513 -----------------C--------------GFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAI-DSLRP 560 (768)
Q Consensus 513 -----------------~--------------g~~~~~i~~IpVSA~tG~gI~e~~~~~~~~~wy~G~~LLe~L-~~l~~ 560 (768)
. -.....+|++..||+++.|+.. ||++| ..+|.
T Consensus 227 e~~~~~d~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pv~~gsa~~~~gv~~---------------lLd~i~~~lPs 291 (709)
T 4fn5_A 227 EAAAEANEELMNKYLEEGELSEAEIKEGLRLRTLACEIVPAVCGSSFKNKGVPL---------------VLDAVIDYLPA 291 (709)
T ss_dssp HHHHTSSHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSCEEEEECBTTTTBTHHH---------------HHHHHHHHSCC
T ss_pred HHHHhccHHHHHHHHhcCCccHHHHHHHHHHhhhhceeeeeeeeecccCCchHH---------------HHHHHHhhCCC
Confidence 0 0001234566778888888743 88887 55666
Q ss_pred CC--------------------CCCCCCceeeeEeEEeeC-CCcEEEEEEEecCcccCCCEEEEccCCeeeEEEeeee--
Q 004209 561 PP--------------------REFSKPLLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIER-- 617 (768)
Q Consensus 561 ~~--------------------~~~~~plr~~I~dv~~~~-~G~V~v~G~V~sG~L~~Gd~v~i~P~~~~~~VksI~~-- 617 (768)
|. .+.+.||.+.|.++...+ .|.+ ++|||.+|+|+.||+|+....++..+|..|..
T Consensus 292 P~~~~~~~~~~~~~~~~~~~~~~d~~~pl~~~VfK~~~d~~~G~l-a~~RV~sGtl~~G~~v~~~~~~~~~~v~~l~~~~ 370 (709)
T 4fn5_A 292 PTEIPAIKGVSPDDETVEDERHADDNEPFSSLAFKIATDPFVGTL-TFARVYSGVLSSGDSVLNSVKGKKERVGRMVQMH 370 (709)
T ss_dssp TTSSCCEECBCCC-CCSCCEECSCTTSCCEEEEEECCCBTTTBCC-CEEEEEESCEETTCBCBCTTTCCCCBCCCEECCC
T ss_pred CcccccccccCCccccccccccCCccCcceEEEEEeecccCCCce-EEEeccCCCCCCCCEEEEecCCcEEeecceeEee
Confidence 52 345679999999988888 8988 89999999999999999877777777776654
Q ss_pred --cccccceeccCCceEEEecccccccccCCcccccCCCC
Q 004209 618 --DSQSCSVARAGDNIAVSLQGIDVSRVMSGGVLCHPDFP 655 (768)
Q Consensus 618 --~~~~v~~A~aGd~V~l~L~gi~~~~i~rG~VL~~~~~p 655 (768)
...++++|.||++|+|. |++ ++..|++|++.+.+
T Consensus 371 g~~~~~v~~~~aGdIv~i~--Gl~--~~~~gdTl~~~~~~ 406 (709)
T 4fn5_A 371 ANQREEIKEVRAGDIAALI--GMK--DVTTGDTLCSIEKP 406 (709)
T ss_dssp SSCCCEESEECTTCEEEEC--SCS--SCCTTCEEECSSSC
T ss_pred cceeeEeeeecCCCeeeec--CCC--cCccCCEecCCCcc
Confidence 35789999999999875 764 58899999987654
No 24
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.97 E-value=8.9e-32 Score=308.88 Aligned_cols=253 Identities=21% Similarity=0.287 Sum_probs=198.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEee-CC
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS-KN 417 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~-~~ 417 (768)
+.++|+++||+|+|||||+++|++.. ......+|+|.+.....+.+ .+
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~-------------------------------~~~~~~~giT~~i~~~~v~~~~g 51 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQ-------------------------------VAAMEAGGITQHIGAFLVSLPSG 51 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHH-------------------------------HHHSSSCCBCCCTTSCCBCSSCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC-------------------------------cccccCCceeEEEeEEEEEeCCC
Confidence 45789999999999999999998521 11123467888777666665 56
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccchh
Q 004209 418 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 497 (768)
Q Consensus 418 ~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~e 497 (768)
..++|||||||++|...+.+++..+|++|||||++++. +.|+.+++.++...++| +|||+||+|+.+.+.+
T Consensus 52 ~~i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~dg~--------~~qt~e~l~~~~~~~vP-iIVViNKiDl~~~~~~ 122 (537)
T 3izy_P 52 EKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGV--------MKQTVESIQHAKDAHVP-IVLAINKCDKAEADPE 122 (537)
T ss_dssp SCCBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSSCC--------CHHHHHHHHHHHTTTCC-EEECCBSGGGTTTSCC
T ss_pred CEEEEEECCChHHHHHHHHHHHccCCEEEEEEECCCCc--------cHHHHHHHHHHHHcCCc-EEEEEecccccccchH
Confidence 78999999999999999999999999999999999874 67999999999999999 8999999999864443
Q ss_pred hHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCcccCCCCcccccccCCcchhhhhhc---cCCCCCCCCCCceeeeE
Q 004209 498 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDS---LRPPPREFSKPLLMPIC 574 (768)
Q Consensus 498 ~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e~~~~~~~~~wy~G~~LLe~L~~---l~~~~~~~~~plr~~I~ 574 (768)
.+.....++...+..++ ..++++++||++|.|+.+ |++.|.. .+.+....+.|++++|.
T Consensus 123 ~v~~~l~~~~~~~e~~~---~~~~iv~vSAktG~GI~e---------------Lle~I~~l~~~~~~~~~~~~~~~~~V~ 184 (537)
T 3izy_P 123 KVKKELLAYDVVCEDYG---GDVQAVHVSALTGENMMA---------------LAEATIALAEMLELKADPTGAVEGTVI 184 (537)
T ss_dssp SSSSHHHHTTSCCCCSS---SSEEECCCCSSSSCSSHH---------------HHHHHHHHHTTCCCCCCSSSSEEEEEE
T ss_pred HHHHHHHhhhhhHHhcC---CCceEEEEECCCCCCchh---------------HHHHHHHhhhcccccCCCCCCcceeEE
Confidence 32211111111111121 246899999999999976 6666632 33445556789999999
Q ss_pred eEEeeC-CCcEEEEEEEecCcccCCCEEEEccCCeeeEEEeeeecc-cccceeccCCceEEEecccccccccCCcccccC
Q 004209 575 DVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERDS-QSCSVARAGDNIAVSLQGIDVSRVMSGGVLCHP 652 (768)
Q Consensus 575 dv~~~~-~G~V~v~G~V~sG~L~~Gd~v~i~P~~~~~~VksI~~~~-~~v~~A~aGd~V~l~L~gi~~~~i~rG~VL~~~ 652 (768)
+++..+ .|++ ++|+|.+|+|++||.|.. .....+|++|+.++ .++++|.||++|+|. |++ ....+|++|+.+
T Consensus 185 e~~~~~g~G~V-~~g~V~~G~l~~Gd~v~~--g~~~~kVr~i~~~~g~~v~~A~~G~~V~i~--g~~-~~~~~Gd~l~~~ 258 (537)
T 3izy_P 185 ESFTDKGRGPV-TTAIIQRGTLRKGSILVA--GKSWAKVRLMFDENGRAVNEAYPSMPVGII--GWR-DLPSAGDEILEV 258 (537)
T ss_dssp EECCCTTCCCC-EEEEEEEECCSSEEEECC--SSCCEEEEEEEECCCCCSCCSCCSTTCCCC--SSE-EEEEEESSCCSC
T ss_pred EEEEeCCCceE-EEEEEecCEEEcCCEEEe--CCceEEEEEEEcCCCCCCcEEcCCCEEEEE--CCC-CCCCCCCEEEec
Confidence 999998 9998 899999999999998753 34568999999985 799999999999885 665 335899999987
Q ss_pred CCC
Q 004209 653 DFP 655 (768)
Q Consensus 653 ~~p 655 (768)
+++
T Consensus 259 ~~~ 261 (537)
T 3izy_P 259 ESE 261 (537)
T ss_dssp CSS
T ss_pred CCh
Confidence 543
No 25
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.96 E-value=1.5e-29 Score=291.00 Aligned_cols=286 Identities=21% Similarity=0.285 Sum_probs=186.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCe
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 418 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~ 418 (768)
..++|+|+||+|||||||+++|++..+.+...... .+.... ....+|....|+++|+|+......+.+.++
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v--------~~~~~~-~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~ 82 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTV--------KGRGSN-QHAKSDWMEMEKQRGISITTSVMQFPYHDC 82 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC----------------------------------------CCTTEEEEEETTE
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCcccccee--------ecCccc-cceeeccchhcccCCcceeeeEEEEEECCe
Confidence 45899999999999999999999765554321100 000000 012467778899999999988888899999
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccchhh
Q 004209 419 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 498 (768)
Q Consensus 419 ~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~e~ 498 (768)
.++|||||||.+|...+.+++..+|++|+|||+..+. ..|+.+++..+...++| +|+|+||+|+...+.
T Consensus 83 ~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~--------~~~t~~~~~~~~~~~ip-iivviNK~Dl~~~~~-- 151 (529)
T 2h5e_A 83 LVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGV--------EDRTRKLMEVTRLRDTP-ILTFMNKLDRDIRDP-- 151 (529)
T ss_dssp EEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCS--------CHHHHHHHHHHTTTTCC-EEEEEECTTSCCSCH--
T ss_pred EEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCccc--------hHHHHHHHHHHHHcCCC-EEEEEcCcCCccccH--
Confidence 9999999999999999999999999999999999874 57999999999889999 899999999986432
Q ss_pred HHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCcccCCC----------------------------------------
Q 004209 499 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD---------------------------------------- 538 (768)
Q Consensus 499 ~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e~~~---------------------------------------- 538 (768)
.++.+++...+.. ....+.|...|+.++.|+.+...
T Consensus 152 -~~~~~~i~~~l~~---~~~~~~~pi~sa~~~~Gv~dl~~~~~~~~~~~~g~~~~~~~~i~~~~~~~l~e~~~~~~~~~~ 227 (529)
T 2h5e_A 152 -MELLDEVENELKI---GCAPITWPIGCGKLFKGVYHLYKDETYLYQSGKGHTIQEVRIVKGLNNPDLDAAVGEDLAQQL 227 (529)
T ss_dssp -HHHHHHHHHHHCC---EEEESEEEESCGGGCCEEEETTTTEEEECCTTCCSSCCCCCEECCSSCHHHHHHHCHHHHHHH
T ss_pred -HHHHHHHHHHhCC---CccceecceecccCcceeeehhhhhHhhhcccCCCcccccccCCCCCHHHHHHhhCHHHHHHh
Confidence 2233344333311 00001111123333333322100
Q ss_pred --------------------CcccccccCC--------cchhhhhhc-cCCCCCC---------CCCCceeeeEeEEe--
Q 004209 539 --------------------DGRLLSWYKG--------PCLLDAIDS-LRPPPRE---------FSKPLLMPICDVLK-- 578 (768)
Q Consensus 539 --------------------~~~~~~wy~G--------~~LLe~L~~-l~~~~~~---------~~~plr~~I~dv~~-- 578 (768)
...+.|||.| ..||++|.. +|+|... .+.||...|+++..
T Consensus 228 ~e~~~l~~~~~~~~~~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~~P~P~~~~~~~~~~~~~~~~~~~~vfKi~~~~ 307 (529)
T 2h5e_A 228 RDELELVKGASNEFDKELFLAGEITPVFFGTALGNFGVDHMLDGLVEWAPAPMPRQTDTRTVEASEDKFTGFVFKIQANM 307 (529)
T ss_dssp HHHHHHHHHHSCCCCHHHHHTTSEEEEEECBTTTTBSHHHHHHHHHHHSCSSCCEEBSSCEECTTCCSCEEEEEEECSSC
T ss_pred hcccchhhhhhhhhhHHHHHhCceeEEEeeecccCCCHHHHHHHHHHhCCCCCcccccccccCCCCCCeEEEEEEEeecc
Confidence 0001233322 248998855 4544321 13577777766643
Q ss_pred -eC-CCcEEEEEEEecCcccCCCEEEEccCCeeeEEEeeeec----ccccceeccCCceEEEecccccccccCCcccccC
Q 004209 579 -SQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERD----SQSCSVARAGDNIAVSLQGIDVSRVMSGGVLCHP 652 (768)
Q Consensus 579 -~~-~G~V~v~G~V~sG~L~~Gd~v~i~P~~~~~~VksI~~~----~~~v~~A~aGd~V~l~L~gi~~~~i~rG~VL~~~ 652 (768)
.+ .|++ ++|||.+|+|+.||+|++.|.++..+|.+|+.. +.++++|.|||+|+|. ++ .+++.||+|+++
T Consensus 308 d~~~~G~i-~~~RV~sG~l~~g~~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdiv~i~--~l--~~~~~Gdtl~~~ 382 (529)
T 2h5e_A 308 DPKHRDRV-AFMRVVSGKYEKGMKLRQVRTAKDVVISDALTFMAGDRSHVEEAYPGDILGLH--NH--GTIQIGDTFTQG 382 (529)
T ss_dssp CSSSSCCC-EEEEEEESCEETTCEEEETTTTEEEECSCEECCCC-----CCEECTTCEEEEC--CS--SCCCTTCEEESS
T ss_pred CcCCCceE-EEEEEecCeEcCCCEEEEeeCCCEEEeceeeEEeCCCceEcceECCCCEEEEe--cc--CCCccCCEeecC
Confidence 23 7998 899999999999999999999999999999964 6789999999999886 44 567889999986
Q ss_pred C
Q 004209 653 D 653 (768)
Q Consensus 653 ~ 653 (768)
+
T Consensus 383 ~ 383 (529)
T 2h5e_A 383 E 383 (529)
T ss_dssp C
T ss_pred C
Confidence 5
No 26
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.96 E-value=8e-31 Score=298.67 Aligned_cols=247 Identities=26% Similarity=0.292 Sum_probs=195.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCe
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 418 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~ 418 (768)
+.++|+++||+|+|||||+++|++.. ......+|+|++.+...+.+++.
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~-------------------------------v~~~e~~GIT~~i~~~~v~~~~~ 51 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTK-------------------------------VASGEAGGITQHIGAYHVETENG 51 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHH-------------------------------HSBTTBCCCCCCSSCCCCCTTSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCC-------------------------------CccccCCCeeEeEEEEEEEECCE
Confidence 56899999999999999999998421 01112378888888777888888
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccchhh
Q 004209 419 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 498 (768)
Q Consensus 419 ~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~e~ 498 (768)
.++|||||||++|..++.+++..+|++|||||+++|. ++|+.+++.++..+++| +|||+||+|+.+++.++
T Consensus 52 ~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g~--------~~qT~e~l~~~~~~~vP-iIVviNKiDl~~~~~~~ 122 (501)
T 1zo1_I 52 MITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGV--------MPQTIEAIQHAKAAQVP-VVVAVNKIDKPEADPDR 122 (501)
T ss_dssp CCCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTTBS--------CTTTHHHHHHHHHTTCC-EEEEEECSSSSTTCCCC
T ss_pred EEEEEECCCcHHHHHHHHHHHhhCCEEEEEeecccCc--------cHHHHHHHHHHHhcCce-EEEEEEeccccccCHHH
Confidence 9999999999999999999999999999999999874 57999999999999999 89999999998654333
Q ss_pred HHHHHHHHhH---HHhhcCCCCCCCcEEEeecccCCCcccCCCCcccccccCCcchhhhhhc---cCCCCCCCCCCceee
Q 004209 499 FDSIKVQLGT---FLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDS---LRPPPREFSKPLLMP 572 (768)
Q Consensus 499 ~~~i~~el~~---~lk~~g~~~~~i~~IpVSA~tG~gI~e~~~~~~~~~wy~G~~LLe~L~~---l~~~~~~~~~plr~~ 572 (768)
+ ..++.. +...++ ..++++++||++|.|+.+ |++.|.. +..+....+.|+.++
T Consensus 123 v---~~~l~~~~~~~~~~~---~~~~~v~vSAktG~gI~e---------------Lle~I~~~~~~~~~~~~~~~~~~~~ 181 (501)
T 1zo1_I 123 V---KNELSQYGILPEEWG---GESQFVHVSAKAGTGIDE---------------LLDAILLQAEVLELKAVRKGMASGA 181 (501)
T ss_dssp T---TCCCCCCCCCTTCCS---SSCEEEECCTTTCTTCTT---------------HHHHTTTTCCCSTTTSCCCSBCEEE
T ss_pred H---HHHHHHhhhhHHHhC---CCccEEEEeeeeccCcch---------------hhhhhhhhhhhhccccccccccccc
Confidence 1 111111 011111 246899999999999965 7777733 233344557789999
Q ss_pred eEeEEeeC-CCcEEEEEEEecCcccCCCEEEEccCCeeeEEEeeee-cccccceeccCCceEEEecccccccccCCcccc
Q 004209 573 ICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIER-DSQSCSVARAGDNIAVSLQGIDVSRVMSGGVLC 650 (768)
Q Consensus 573 I~dv~~~~-~G~V~v~G~V~sG~L~~Gd~v~i~P~~~~~~VksI~~-~~~~v~~A~aGd~V~l~L~gi~~~~i~rG~VL~ 650 (768)
|.+++..+ .|++ ++|+|.+|+|++||.|++++ ...+|++|+. ++.++++|.||++|.+. |++ .....|++++
T Consensus 182 V~e~~~d~g~G~v-~~~~V~~Gtlk~Gd~v~~g~--~~~kVr~i~~~~g~~v~~a~~g~~V~i~--gl~-~~~~~Gd~~~ 255 (501)
T 1zo1_I 182 VIESFLDKGRGPV-ATVLVREGTLHKGDIVLCGF--EYGRVRAMRNELGQEVLEAGPSIPVEIL--GLS-GVPAAGDEVT 255 (501)
T ss_dssp EEEEEECSSSSEE-EEEEEEESBCCTTCEEEEEB--SSCEEEEECCTTTTSEEEECCSSCSSSE--EEC-SCCCTTEEEE
T ss_pred eEEEEEeCCcEEE-EEEEEEeeEEecCCEEEEcc--ceeEEEEEEecCCCcCcEeccCCcEEEe--CCC-CCCCCCCEEE
Confidence 99999988 8998 89999999999999999875 4679999986 56899999999999876 554 2246799887
Q ss_pred cC
Q 004209 651 HP 652 (768)
Q Consensus 651 ~~ 652 (768)
..
T Consensus 256 ~~ 257 (501)
T 1zo1_I 256 VV 257 (501)
T ss_dssp EE
T ss_pred ec
Confidence 53
No 27
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.96 E-value=1.6e-28 Score=291.48 Aligned_cols=271 Identities=27% Similarity=0.345 Sum_probs=213.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC-
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN- 417 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~- 417 (768)
..++|+|+||+|||||||+++|++..+.+.... ....+ ..++|....|+++|+|+......+.+.+
T Consensus 9 ~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g---------~v~~g----~~~~D~~~~E~~rgiTi~~~~~~~~~~~~ 75 (704)
T 2rdo_7 9 RYRNIGISAHIDAGKTTTTERILFYTGVNHKIG---------EVHDG----AATMDWMEQEQERGITITSAATTAFWSGM 75 (704)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCccccc---------ccCCC----ceeecChhhHHhcCceeeeceEEEEECCc
Confidence 468999999999999999999997666543221 00011 2467888899999999998888888777
Q ss_pred ------eEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccc
Q 004209 418 ------YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDA 491 (768)
Q Consensus 418 ------~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDl 491 (768)
+.++|||||||.+|...+.++++.+|++|+|||++.+. ..|+.+++..+...++| +++|+||+|+
T Consensus 76 ~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv--------~~qt~~~~~~~~~~~ip-~ilviNKiD~ 146 (704)
T 2rdo_7 76 AKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGV--------QPQSETVWRQANKYKVP-RIAFVNKMDR 146 (704)
T ss_pred cccCCceeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCC--------cHHHHHHHHHHHHcCCC-EEEEEeCCCc
Confidence 89999999999999999999999999999999999874 56899999999889999 7899999999
Q ss_pred cccchhhHHHHHHHHhHHHhhc--------------------------CC------------------------------
Q 004209 492 VQYSKDRFDSIKVQLGTFLRSC--------------------------GF------------------------------ 515 (768)
Q Consensus 492 v~~s~e~~~~i~~el~~~lk~~--------------------------g~------------------------------ 515 (768)
...+ ++++.+++...+... -|
T Consensus 147 ~~~~---~~~~~~~l~~~l~~~~~~~~~Pi~~~~~f~g~~dl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~ 223 (704)
T 2rdo_7 147 MGAN---FLKVVNQIKTRLGANPVPLQLAIGAEEHFTGVVDLVKMKAINWNDADQGVTFEYEDIPADMVELANEWHQNLI 223 (704)
T ss_pred cccc---HHHHHHHHHHHhCCCceeEEccccccccccceeehhhhhhhcccCccCCcceEEecCCHHHHHHHHHHHHHHH
Confidence 7532 333444444333210 00
Q ss_pred ----------------------------------CCCCCcEEEeecccCCCcccCCCCcccccccCCcchhhhh-hccCC
Q 004209 516 ----------------------------------KDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAI-DSLRP 560 (768)
Q Consensus 516 ----------------------------------~~~~i~~IpVSA~tG~gI~e~~~~~~~~~wy~G~~LLe~L-~~l~~ 560 (768)
....+|++..||++|.|+.. ||++| ..+|+
T Consensus 224 e~~ae~dd~l~e~~l~~~~l~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~---------------LLd~i~~~lPs 288 (704)
T 2rdo_7 224 ESAAEASEELMEKYLGGEELTEAEIKGALRQRVLNNEIILVTCGSAFKNKGVQA---------------MLDAVIDYLPS 288 (704)
T ss_pred HHHHhcCHHHHHHHhcCCCCCHHHHHHHHHHHHHhCCeeEEEEeecccCccHHH---------------HHHHHHHHCCC
Confidence 00124677788988888854 89988 45555
Q ss_pred CCC--------------------CCCCCceeeeEeEEeeC-CCcEEEEEEEecCcccCCCEEEEccCCeeeEEEeeee--
Q 004209 561 PPR--------------------EFSKPLLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIER-- 617 (768)
Q Consensus 561 ~~~--------------------~~~~plr~~I~dv~~~~-~G~V~v~G~V~sG~L~~Gd~v~i~P~~~~~~VksI~~-- 617 (768)
|.. +.+.||.+.|++++..+ .|.+ ++|||.+|+|+.||+|+..+.+...+|..|..
T Consensus 289 P~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~VfK~~~d~~~G~~-~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~ 367 (704)
T 2rdo_7 289 PVDVPAINGILDDGKDTPAERHASDDEPFSALAFKIATDPFVGNL-TFFRVYSGVVNSGDTVLNSVKAARERFGRIVQMH 367 (704)
T ss_pred hhhcccccccCCcccccccccccCCCCceEEEEEEEEEcCCCceE-EEEEEEeeeecCCCEEEeCCCCcEEEeceEEEEe
Confidence 532 14679999999999998 8998 89999999999999999999888889988875
Q ss_pred --cccccceeccCCceEEEecccccccccCCcccccCCC
Q 004209 618 --DSQSCSVARAGDNIAVSLQGIDVSRVMSGGVLCHPDF 654 (768)
Q Consensus 618 --~~~~v~~A~aGd~V~l~L~gi~~~~i~rG~VL~~~~~ 654 (768)
...+++.|.||++|+|. |++ +++.||+|++++.
T Consensus 368 g~~~~~v~~~~aGdIv~i~--gl~--~~~~GdTl~~~~~ 402 (704)
T 2rdo_7 368 ANKREEIKEVRAGDIAAAI--GLK--DVTTGDTLCDPDA 402 (704)
T ss_pred CCCceEcceeCCCCEEEEe--Ccc--cCccCCEEeCCCc
Confidence 35789999999999997 654 5789999998654
No 28
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.96 E-value=1e-28 Score=292.63 Aligned_cols=273 Identities=29% Similarity=0.363 Sum_probs=197.8
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC
Q 004209 338 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 417 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~ 417 (768)
...++|+|+||+|||||||+++|++..+.+.... .. .. -...+|....|+++|+|+......+.+.+
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g--~v-------~~----~~~~~d~~~~E~~~giTi~~~~~~~~~~~ 76 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIG--EV-------HE----GAATMDFMEQERERGITITAAVTTCFWKD 76 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC-----------------------------------------CCEEEEEETT
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccc--ee-------cC----CceeccCchhhhhcccccccceEEEEECC
Confidence 3568999999999999999999997665543221 00 00 12356788889999999998888888899
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccchh
Q 004209 418 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 497 (768)
Q Consensus 418 ~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~e 497 (768)
+.++|||||||.+|...+.+++..+|++|+|||+..+. ..|+.+++..+...++| +++|+||+|+...+
T Consensus 77 ~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~--------~~~t~~~~~~~~~~~~p-~ivviNKiD~~~~~-- 145 (691)
T 1dar_A 77 HRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGV--------EPQSETVWRQAEKYKVP-RIAFANKMDKTGAD-- 145 (691)
T ss_dssp EEEEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCS--------CHHHHHHHHHHHHTTCC-EEEEEECTTSTTCC--
T ss_pred eEEEEEECcCccchHHHHHHHHHHCCEEEEEEECCCCc--------chhhHHHHHHHHHcCCC-EEEEEECCCcccCC--
Confidence 99999999999999999999999999999999999874 56888899889899999 78999999997532
Q ss_pred hHHHHHHHHhHHHhhc--------------------------------C-------------------------------
Q 004209 498 RFDSIKVQLGTFLRSC--------------------------------G------------------------------- 514 (768)
Q Consensus 498 ~~~~i~~el~~~lk~~--------------------------------g------------------------------- 514 (768)
+..+.+++...+... +
T Consensus 146 -~~~~~~~l~~~l~~~~~~~~~Pi~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~e~d 224 (691)
T 1dar_A 146 -LWLVIRTMQERLGARPVVMQLPIGREDTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFD 224 (691)
T ss_dssp -HHHHHHHHHHTTCCCEEECEEEESCGGGCCEEEETTTTEEEEECSTTSCCEEEECCCGGGHHHHHHHHHHHHHHHTTTC
T ss_pred -HHHHHHHHHHHhCCCccceeccccCCCcccchhhhhcceeeEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhhCC
Confidence 233333333332100 0
Q ss_pred --------------------------CCCCCCcEEEeecccCCCcccCCCCcccccccCCcchhhhh-hccCCCCC----
Q 004209 515 --------------------------FKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAI-DSLRPPPR---- 563 (768)
Q Consensus 515 --------------------------~~~~~i~~IpVSA~tG~gI~e~~~~~~~~~wy~G~~LLe~L-~~l~~~~~---- 563 (768)
.....+|+++.||++|.|+.. ||++| ..+|.|..
T Consensus 225 d~l~e~~l~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSA~~~~Gv~~---------------LLd~i~~~lPsP~~~~~~ 289 (691)
T 1dar_A 225 ENIMLKYLEGEEPTEEELVAAIRKGTIDLKITPVFLGSALKNKGVQL---------------LLDAVVDYLPSPLDIPPI 289 (691)
T ss_dssp HHHHHHHHHTCCCCHHHHHHHHHHHHHTTSCEEEEECBGGGTBSHHH---------------HHHHHHHHSCCTTTSCCE
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHhCcEeEEEEeecccCcCHHH---------------HHHHHHHhCCChhhcccc
Confidence 000125678889999999854 99998 45665543
Q ss_pred --------------CCCCCceeeeEeEEeeC-CCcEEEEEEEecCcccCCCEEEEccCCeeeEEEeeee----cccccce
Q 004209 564 --------------EFSKPLLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIER----DSQSCSV 624 (768)
Q Consensus 564 --------------~~~~plr~~I~dv~~~~-~G~V~v~G~V~sG~L~~Gd~v~i~P~~~~~~VksI~~----~~~~v~~ 624 (768)
+.+.||.+.|++++..+ .|.+ ++|||.+|+|+.||+|+..+.+...+|..|.. ...++++
T Consensus 290 ~~~~~~~~~~~~~~~~~~p~~~~Vfk~~~d~~~G~~-~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~ 368 (691)
T 1dar_A 290 KGTTPEGEVVEIHPDPNGPLAALAFKIMADPYVGRL-TFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHANHREEVEE 368 (691)
T ss_dssp EEECSSSCEEEECCCTTSCCEEEEEEEEEETTTEEE-EEEEEEESEEESSCEEEETTTTEEEECCEEEEECSSCEEEESE
T ss_pred cccCCCccccccccCCCCCcEEEEEEEEEcCCCCcE-EEEEEeeeeEecCCEEEecCCCcEEEEceEEEEeCCCceEcce
Confidence 24679999999999998 8998 89999999999999999988887778777765 3568999
Q ss_pred eccCCceEEEecccccccccCCcccccCCCC
Q 004209 625 ARAGDNIAVSLQGIDVSRVMSGGVLCHPDFP 655 (768)
Q Consensus 625 A~aGd~V~l~L~gi~~~~i~rG~VL~~~~~p 655 (768)
|.||++|+|. |++ +++.||+|++++.+
T Consensus 369 ~~aGdI~~i~--gl~--~~~~Gdtl~~~~~~ 395 (691)
T 1dar_A 369 LKAGDLGAVV--GLK--ETITGDTLVGEDAP 395 (691)
T ss_dssp EETTCEEEEE--CCS--SCCTTCEEEETTCC
T ss_pred ecCCCEEEEe--Ccc--cCccCCEEecCCCc
Confidence 9999999987 664 46789999987654
No 29
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.95 E-value=1e-27 Score=283.07 Aligned_cols=269 Identities=24% Similarity=0.265 Sum_probs=209.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCe
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 418 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~ 418 (768)
...+|+|+||+|+|||||+++|++..+.+.... .+ ..-...+|....|+.+|+|+......+.+.+.
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G--~V-----------~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~ 74 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRG--RV-----------EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGH 74 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCC--CG-----------GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTE
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCccc--ee-----------cCCcccccCCHHHHhcCCeEEecceEEeeCCE
Confidence 457999999999999999999997655432110 00 01123567778888999999888888888999
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccchhh
Q 004209 419 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 498 (768)
Q Consensus 419 ~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~e~ 498 (768)
.++|||||||.+|...+..++..+|++|+|+|+..+. ..|+.+++..+...++| +|+|+||+|+. ..
T Consensus 75 ~~nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~--------~~qt~~~~~~~~~~~ip-~ilv~NKiD~~-~~--- 141 (665)
T 2dy1_A 75 RVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGV--------QVGTERAWTVAERLGLP-RMVVVTKLDKG-GD--- 141 (665)
T ss_dssp EEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCS--------CHHHHHHHHHHHHTTCC-EEEEEECGGGC-CC---
T ss_pred EEEEEeCCCccchHHHHHHHHhhcCcEEEEEcCCccc--------chhHHHHHHHHHHccCC-EEEEecCCchh-hh---
Confidence 9999999999999999999999999999999999873 57999999999999999 78899999987 32
Q ss_pred HHHHHHHHhHHHh-------------------------------------------------------------------
Q 004209 499 FDSIKVQLGTFLR------------------------------------------------------------------- 511 (768)
Q Consensus 499 ~~~i~~el~~~lk------------------------------------------------------------------- 511 (768)
+.++.+++...+.
T Consensus 142 ~~~~~~~l~~~l~~~~~~~~Pi~~~~~~~g~~d~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~r~~l~e~~~~~d~~l~e 221 (665)
T 2dy1_A 142 YYALLEDLRSTLGPILPIDLPLYEGGKWVGLIDVFHGKAYRYENGEEREAEVPPEERERVQRFRQEVLEAIVETDEGLLE 221 (665)
T ss_dssp HHHHHHHHHHHHCSEEECEEEEEETTEEEEEEETTTTEEEEEETTEEEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCcceEEeeecCCCcccchhhhhhhheeecCCCceeEecCCHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 2233333333221
Q ss_pred ----hcCC--------------CCCCCcEEEeecccCCCcccCCCCcccccccCCcchhhhhh-ccCCCCCC-CCCCcee
Q 004209 512 ----SCGF--------------KDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAID-SLRPPPRE-FSKPLLM 571 (768)
Q Consensus 512 ----~~g~--------------~~~~i~~IpVSA~tG~gI~e~~~~~~~~~wy~G~~LLe~L~-~l~~~~~~-~~~plr~ 571 (768)
...+ ....+|++++||++|.|+.. ||++|. .+|.|... .+.||.+
T Consensus 222 ~~l~~~~l~~~~~~~~~~~~~~~~~~~pv~~~SA~~~~Gv~~---------------Ll~~i~~~lp~p~~~~~~~p~~~ 286 (665)
T 2dy1_A 222 KYLEGEEVTGEALEKAFHEAVRRGLLYPVALASGEREIGVLP---------------LLELILEALPSPTERFGDGPPLA 286 (665)
T ss_dssp HHHHTCCCCHHHHHHHHHHHHHTTSCEEEEECBTTTTBSHHH---------------HHHHHHHHSCCHHHHHCSCSCEE
T ss_pred HHHCCCCCCHHHHHHHHHHHHHhCCeeEEEEeecccCcCHHH---------------HHHHHHHhCCCccccCCCCCeEE
Confidence 0000 00125788889999999854 899984 45555432 5789999
Q ss_pred eeEeEEeeC-CCcEEEEEEEecCcccCCCEEEEccCCeeeEEEeeee----cccccceeccCCceEEEecccccccccCC
Q 004209 572 PICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIER----DSQSCSVARAGDNIAVSLQGIDVSRVMSG 646 (768)
Q Consensus 572 ~I~dv~~~~-~G~V~v~G~V~sG~L~~Gd~v~i~P~~~~~~VksI~~----~~~~v~~A~aGd~V~l~L~gi~~~~i~rG 646 (768)
.|.+++..+ .|++ ++|||.+|+|++||+|++.+ ...+|.+|.. ...++++|.||++|+|. |++ ++++|
T Consensus 287 ~V~k~~~d~~~G~~-~~~rV~sG~l~~g~~v~~~~--~~~~v~~l~~~~g~~~~~v~~a~aG~iv~i~--gl~--~~~~G 359 (665)
T 2dy1_A 287 KVFKVQVDPFMGQV-AYLRLYRGRLKPGDSLQSEA--GQVRLPHLYVPMGKDLLEVEEAEAGFVLGVP--KAE--GLHRG 359 (665)
T ss_dssp EEEEEEEETTTEEE-EEEEEEESEECTTEEEBCTT--SCEEESSEEEEETTEEEEESCEETTCEEEES--SCT--TCCTT
T ss_pred EEEEEEEcCCCCeE-EEEEEcccEEecCCEEEcCC--CeEEEeEEEEEeCCCeeECCEECCCCEEEEe--CCc--cCccC
Confidence 999999998 8988 89999999999999999887 6678888875 35689999999999986 654 57899
Q ss_pred cccccCCCC
Q 004209 647 GVLCHPDFP 655 (768)
Q Consensus 647 ~VL~~~~~p 655 (768)
|+|++++.+
T Consensus 360 dtl~~~~~~ 368 (665)
T 2dy1_A 360 MVLWQGEKP 368 (665)
T ss_dssp CEEESSSCC
T ss_pred CEEecCCCc
Confidence 999986654
No 30
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.95 E-value=2e-27 Score=281.66 Aligned_cols=271 Identities=27% Similarity=0.351 Sum_probs=196.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCe
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 418 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~ 418 (768)
...+|+|+||+|+|||||+++|++..+.+....- ... -...+|....|+++|+|+......+.++++
T Consensus 9 ~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~---------v~~----~~~~~D~~~~e~~~giTi~~~~~~~~~~~~ 75 (693)
T 2xex_A 9 KTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGE---------THE----GASQMDWMEQEQDRGITITSAATTAAWEGH 75 (693)
T ss_dssp TEEEEEEECCGGGTHHHHHHHHHHHHSSCC--------------------------------------CCSEEEEEETTE
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcCCcccccc---------ccC----CceecccchhhhhcCceEeeeeEEEEECCe
Confidence 4689999999999999999999976665432110 000 023567778899999999988888888999
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccchhh
Q 004209 419 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 498 (768)
Q Consensus 419 ~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~e~ 498 (768)
.++|||||||.+|...+...+..+|++|+|||+..+. ..++..++..+...++| +|+|+||+|+...+
T Consensus 76 ~i~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g~--------~~~~~~~~~~~~~~~~p-~ilviNK~Dl~~~~--- 143 (693)
T 2xex_A 76 RVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGV--------EPQTETVWRQATTYGVP-RIVFVNKMDKLGAN--- 143 (693)
T ss_dssp EEEEECCCCCSSCCHHHHHHHHHCSEEEEEEETTTBS--------CHHHHHHHHHHHHTTCC-EEEEEECTTSTTCC---
T ss_pred eEEEEECcCCcchHHHHHHHHHHCCEEEEEECCCCCC--------cHHHHHHHHHHHHcCCC-EEEEEECCCccccc---
Confidence 9999999999999999999999999999999999874 56888888888889998 88999999998632
Q ss_pred HHHHHHHHhHHHhhc--------------------------CCC------------------------------------
Q 004209 499 FDSIKVQLGTFLRSC--------------------------GFK------------------------------------ 516 (768)
Q Consensus 499 ~~~i~~el~~~lk~~--------------------------g~~------------------------------------ 516 (768)
+..+.+++...+... -|.
T Consensus 144 ~~~~~~~l~~~l~~~~~~~~ipisa~~~~~~l~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~r~~l~e~l~e~dd 223 (693)
T 2xex_A 144 FEYSVSTLHDRLQANAAPIQLPIGAEDEFEAIIDLVEMKCFKYTNDLGTEIEEIEIPEDHLDRAEEARASLIEAVAETSD 223 (693)
T ss_dssp HHHHHHHHHHHHCCCEEESEEEECCGGGCCEEEETTTTEEEECCSSSSCSCEEECCCGGGHHHHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHhCCCceeEEeecccCCCcceeeeeecceeEEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhhCCH
Confidence 333444444433210 000
Q ss_pred ---------------------------CCCCcEEEeecccCCCcccCCCCcccccccCCcchhhhh-hccCCCCC-----
Q 004209 517 ---------------------------DASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAI-DSLRPPPR----- 563 (768)
Q Consensus 517 ---------------------------~~~i~~IpVSA~tG~gI~e~~~~~~~~~wy~G~~LLe~L-~~l~~~~~----- 563 (768)
..-+|++..||++|.|+.. ||++| ..+|.|..
T Consensus 224 ~l~e~~l~~~~~~~~~~~~~l~~~~~~~~~~Pv~~gSA~~~~Gv~~---------------LLd~i~~~lPsP~~~~~~~ 288 (693)
T 2xex_A 224 ELMEKYLGDEEISVSELKEAIRQATTNVEFYPVLCGTAFKNKGVQL---------------MLDAVIDYLPSPLDVKPII 288 (693)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHHHHTTSCEEEEECBTTTTBSHHH---------------HHHHHHHHSCCGGGSCCEE
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhCCeeeEEEeecccCcCHHH---------------HHHHHHHHCCCchhccccc
Confidence 0113566777777777743 89988 45665532
Q ss_pred ---------------CCCCCceeeeEeEEeeC-CCcEEEEEEEecCcccCCCEEEEccCCeeeEEEeeeec----ccccc
Q 004209 564 ---------------EFSKPLLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERD----SQSCS 623 (768)
Q Consensus 564 ---------------~~~~plr~~I~dv~~~~-~G~V~v~G~V~sG~L~~Gd~v~i~P~~~~~~VksI~~~----~~~v~ 623 (768)
+.+.||.+.|++++..+ .|.+ ++|||.+|+|+.||+|+....+...+|..|... ..+++
T Consensus 289 ~~~~~~~~~~~~~~~~~~~p~~a~VfK~~~d~~~g~~-~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~ 367 (693)
T 2xex_A 289 GHRASNPEEEVIAKADDSAEFAALAFKVMTDPYVGKL-TFFRVYSGTMTSGSYVKNSTKGKRERVGRLLQMHANSRQEID 367 (693)
T ss_dssp EEETTEEEEEEEECSCTTSCCEEEEEEEEEETTTEEE-EEEEEEESEEETTEEEEETTTTEEEEECCEEEECSSCEEECS
T ss_pred ccCCCccccceeecCCCCCceEEEEEEeeecCCCceE-EEEEEEeeeEecCCEEEecCCCceEEeceEEEEeCCCceEcc
Confidence 24679999999999998 8988 899999999999999999888888888888653 46899
Q ss_pred eeccCCceEEEecccccccccCCcccccCCC
Q 004209 624 VARAGDNIAVSLQGIDVSRVMSGGVLCHPDF 654 (768)
Q Consensus 624 ~A~aGd~V~l~L~gi~~~~i~rG~VL~~~~~ 654 (768)
.|.||++|+|. |++ +++.||+|++++.
T Consensus 368 ~~~aGdI~~i~--gl~--~~~~GdTl~~~~~ 394 (693)
T 2xex_A 368 TVYSGDIAAAV--GLK--DTGTGDTLCGEKN 394 (693)
T ss_dssp EEETTCEEEEE--SCS--SCCTTCEEEETTC
T ss_pred ccCcCCEEEEe--Ccc--cCccCCEEecCCC
Confidence 99999999987 664 5678999998654
No 31
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.95 E-value=1.8e-28 Score=285.28 Aligned_cols=256 Identities=25% Similarity=0.340 Sum_probs=186.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEee---
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS--- 415 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~--- 415 (768)
+.++|+|+||+|||||||+++|++.... + ...+|+|.+.+...+.+
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~---------------------------~----~e~ggiT~~ig~~~~~~~~~ 52 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVA---------------------------S----REAGGITQHIGATEIPMDVI 52 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHS---------------------------C----C----CCCBTTEEEEEHHHH
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCc---------------------------c----ccCCceecccCeEEEeechh
Confidence 5689999999999999999999853110 0 00124444433333321
Q ss_pred ---------------CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCC
Q 004209 416 ---------------KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVD 480 (768)
Q Consensus 416 ---------------~~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip 480 (768)
....++|||||||++|...+.+++..+|++|||+|+++|+ +.|+.+++.++...++|
T Consensus 53 ~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv--------~~qT~e~l~~l~~~~vP 124 (594)
T 1g7s_A 53 EGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGF--------KPQTQEALNILRMYRTP 124 (594)
T ss_dssp HHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCC--------CHHHHHHHHHHHHTTCC
T ss_pred hhhccccccccccccccCCEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCc--------cHhHHHHHHHHHHcCCe
Confidence 1236999999999999988888899999999999999984 67999999999999999
Q ss_pred eEEEEEecccccc-cch------------------hhHHHHHHHHhHHHhhcCCC----------CCCCcEEEeecccCC
Q 004209 481 QLIVAVNKMDAVQ-YSK------------------DRFDSIKVQLGTFLRSCGFK----------DASLTWIPLSALENQ 531 (768)
Q Consensus 481 ~iIVVvNKmDlv~-~s~------------------e~~~~i~~el~~~lk~~g~~----------~~~i~~IpVSA~tG~ 531 (768)
+|||+||||+.. |.. +.+.+...++...|...++. ...++++++||++|.
T Consensus 125 -iIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~ 203 (594)
T 1g7s_A 125 -FVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGE 203 (594)
T ss_dssp -EEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCT
T ss_pred -EEEEecccccccccccccCCchHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCC
Confidence 899999999974 321 22333334444445444442 134689999999999
Q ss_pred CcccCCCCcccccccCCcchhhhhhcc----CC--CCCCCCCCceeeeEeEEeeC-CCcEEEEEEEecCcccCCCEEEEc
Q 004209 532 NLVTAPDDGRLLSWYKGPCLLDAIDSL----RP--PPREFSKPLLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVL 604 (768)
Q Consensus 532 gI~e~~~~~~~~~wy~G~~LLe~L~~l----~~--~~~~~~~plr~~I~dv~~~~-~G~V~v~G~V~sG~L~~Gd~v~i~ 604 (768)
|+.+ |++.|..+ .. ...+.+.|+++.|.+++..+ .|++ ++|+|.+|+|++||.|+++
T Consensus 204 GI~e---------------Ll~~I~~~~~~~~~~~l~~~~~~p~~~~V~~~~~d~g~G~v-~~~rV~~G~Lk~Gd~v~~~ 267 (594)
T 1g7s_A 204 GIPE---------------LLTMLMGLAQQYLREQLKIEEDSPARGTILEVKEETGLGMT-IDAVIYDGILRKDDTIAMM 267 (594)
T ss_dssp THHH---------------HHHHHHHHHHHHCSGGGEECTTSBCEEEEEEEEEETTEEEE-EEEEEEESEEETTCEEEEE
T ss_pred Cchh---------------HHHHHHhhccccchhhhccccCCCceeEEEEEEEeCCcEEE-EEEEEeeCEEeeCCEEEEC
Confidence 9976 66666322 11 12234789999999999998 8988 8999999999999999999
Q ss_pred cCCe--eeEEEeeeec------------ccccceec--cCCceEEEecccccccccCCcccccCCC
Q 004209 605 PSGE--VGTVHSIERD------------SQSCSVAR--AGDNIAVSLQGIDVSRVMSGGVLCHPDF 654 (768)
Q Consensus 605 P~~~--~~~VksI~~~------------~~~v~~A~--aGd~V~l~L~gi~~~~i~rG~VL~~~~~ 654 (768)
|.+. .++|++|... ..++++|. +|+.|++ .++ .++..|+.|+..+.
T Consensus 268 ~~~~~~~~rV~~i~~~~~~~elr~~~~~~~~v~ea~~~aG~~v~~--~~l--~~~~~Gd~l~~~~~ 329 (594)
T 1g7s_A 268 TSKDVISTRIRSLLKPRPLEEMRESRKKFQKVDEVVAAAGIKIVA--PGI--DDVMAGSPLRVVTD 329 (594)
T ss_dssp BSSSEEEEECCEEEEECCCC----CCCSEEECSEEESSEEEEEEC--SSC--TTBCTTCEEEECSS
T ss_pred CCCCceeEEEeEEEeccccchhhhccCCceEccEEcCCCCcEEEE--ccc--CCCCCCCEEEecCC
Confidence 9876 4589999753 35677888 6665544 343 44678999987654
No 32
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.93 E-value=3.4e-25 Score=267.68 Aligned_cols=289 Identities=25% Similarity=0.337 Sum_probs=193.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeC--
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK-- 416 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~-- 416 (768)
..+||+|+||+|||||||+++|++..+.+..... +. ...+|....|+++|+|+......+.+.
T Consensus 18 ~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~----------~~-----~~~~D~~~~E~~rgiTI~~~~~~~~~~~~ 82 (842)
T 1n0u_A 18 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKA----------GE-----ARFTDTRKDEQERGITIKSTAISLYSEMS 82 (842)
T ss_dssp GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC---------------------------------CCCBCCCEEEEEEECC
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccC----------CC-----ceeecCchhhhhcceeEeeceeEEEeccc
Confidence 4579999999999999999999987776654320 11 235678888999999997666555443
Q ss_pred --------------CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeE
Q 004209 417 --------------NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQL 482 (768)
Q Consensus 417 --------------~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~i 482 (768)
++.++|||||||.+|...+..+++.+|++|+|||+..+. ..|+..++..+...++| +
T Consensus 83 ~~~~~~i~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~--------~~qt~~~~~~~~~~~~p-~ 153 (842)
T 1n0u_A 83 DEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGV--------CVQTETVLRQALGERIK-P 153 (842)
T ss_dssp HHHHHHCSSCCCSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBS--------CHHHHHHHHHHHHTTCE-E
T ss_pred ccccccccccccCCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCC--------CHHHHHHHHHHHHcCCC-e
Confidence 688999999999999999999999999999999999884 56888888888888998 7
Q ss_pred EEEEeccccccc----c----hhhHHHHHHHHhHHHhhc-----C---CCCCCCcEEEeecccCCCccc----------C
Q 004209 483 IVAVNKMDAVQY----S----KDRFDSIKVQLGTFLRSC-----G---FKDASLTWIPLSALENQNLVT----------A 536 (768)
Q Consensus 483 IVVvNKmDlv~~----s----~e~~~~i~~el~~~lk~~-----g---~~~~~i~~IpVSA~tG~gI~e----------~ 536 (768)
|+|+||+|+... + ...+..+.+++...+..+ + +.+...++...|+++|.++.- .
T Consensus 154 ilviNK~D~~~~e~~~~~~e~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~p~~~~v~~~sa~~g~~~~~~~f~~~y~~~~ 233 (842)
T 1n0u_A 154 VVVINKVDRALLELQVSKEDLYQTFARTVESVNVIVSTYADEVLGDVQVYPARGTVAFGSGLHGWAFTIRQFATRYAKKF 233 (842)
T ss_dssp EEEEECHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHSCGGGCCCCCCGGGTCEEEEETTTTEEEEHHHHHHHHHTTT
T ss_pred EEEEECCCcchhhhccCHHHHHHHHHHHHHHHHHHHhhccccccCceeeceEEeeeEEeecccccccchhhhhhhcchhc
Confidence 899999999731 1 223455566666655421 1 332234567789988755310 0
Q ss_pred CCC---cccccc--------------------------------------------------------------------
Q 004209 537 PDD---GRLLSW-------------------------------------------------------------------- 545 (768)
Q Consensus 537 ~~~---~~~~~w-------------------------------------------------------------------- 545 (768)
..+ ....-|
T Consensus 234 ~~~~~~l~~~~~~d~~~~~~~~~~~~~~i~~~~~~~~~~f~~~~~~~~~~l~e~~~~~d~~~~e~~l~~~g~~l~~~e~~ 313 (842)
T 1n0u_A 234 GVDKAKMMDRLWGDSFFNPKTKKWTNKDTDAEGKPLERAFNMFILDPIFRLFTAIMNFKKDEIPVLLEKLEIVLKGDEKD 313 (842)
T ss_dssp TSCHHHHHHHTSSSCEEETTTTEEESCSBCTTCCBCCBHHHHHTHHHHHHHHHHHHTTCTTHHHHHHHHTTCCCCGGGGG
T ss_pred CCCHHHHHHHHhccccccCCCCeEEEecCCchhhhhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCCCCHHHHh
Confidence 000 000001
Q ss_pred --------------cC-Ccchhhhh-hccCCCC-------------------------CCCCCCceeeeEeEEeeC-CCc
Q 004209 546 --------------YK-GPCLLDAI-DSLRPPP-------------------------REFSKPLLMPICDVLKSQ-HGQ 583 (768)
Q Consensus 546 --------------y~-G~~LLe~L-~~l~~~~-------------------------~~~~~plr~~I~dv~~~~-~G~ 583 (768)
+- ...||++| ..+|+|. .+.+.||.+.|++++..+ .|.
T Consensus 314 ~~~~~l~~~~~~~~~pv~~~LLd~i~~~lPsP~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~~a~VfK~~~~~~~G~ 393 (842)
T 1n0u_A 314 LEGKALLKVVMRKFLPAADALLEMIVLHLPSPVTAQAYRAEQLYEGPADDANCIAIKNCDPKADLMLYVSKMVPTSDKGR 393 (842)
T ss_dssp CCHHHHHHHHHHHHSBHHHHHHHHHHHHSCCHHHHHHHHHHHHBSSCTTSHHHHHHHTTCTTSSCEEEEEEEEEBSSTTC
T ss_pred hhhHHHHHHHHhhccchHHHHHHHHHHhCCChhHhcccccccccCCcccccccceeeccCCCCCeEEEEEeeeecCCCCc
Confidence 00 03456665 4455552 234679999999999888 897
Q ss_pred EEEEEEEecCcccCCCEEEEccCC------e---eeEEEeeeec----ccccceeccCCceEEEecccccccccCCcccc
Q 004209 584 VSACGKLEAGALRSGLKVLVLPSG------E---VGTVHSIERD----SQSCSVARAGDNIAVSLQGIDVSRVMSGGVLC 650 (768)
Q Consensus 584 V~v~G~V~sG~L~~Gd~v~i~P~~------~---~~~VksI~~~----~~~v~~A~aGd~V~l~L~gi~~~~i~rG~VL~ 650 (768)
+.+++||.+|+|+.|++|++...+ . ..+|..|... ..++++|.||++|+|. |++...+..| +|+
T Consensus 394 ~l~~~RV~sG~l~~g~~v~v~~~~~n~~~~~~~~~~rv~~l~~~~g~~~~~v~~~~aGdI~ai~--gl~~~~~~t~-Tl~ 470 (842)
T 1n0u_A 394 FYAFGRVFAGTVKSGQKVRIQGPNYVPGKKDDLFIKAIQRVVLMMGRFVEPIDDCPAGNIIGLV--GIDQFLLKTG-TLT 470 (842)
T ss_dssp EEEEEEEEESEEETTCEEEEECTTCCSSSCTTEEEEECCEEEEEETTEEEEESEEETTCEEEEE--SCTTTCCSSE-EEE
T ss_pred eEEEEEEEeeeecCCCEEEeccccccCCCCcccceEEeeeeEeeccCcccccceeCCCCEEEEE--ccccceecce-eec
Confidence 338999999999999999865322 2 4677777653 5689999999999886 7654333334 888
Q ss_pred cCCC
Q 004209 651 HPDF 654 (768)
Q Consensus 651 ~~~~ 654 (768)
+.+.
T Consensus 471 ~~~~ 474 (842)
T 1n0u_A 471 TSET 474 (842)
T ss_dssp SCTT
T ss_pred CCCC
Confidence 7443
No 33
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.76 E-value=1.6e-19 Score=175.15 Aligned_cols=155 Identities=28% Similarity=0.357 Sum_probs=107.4
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC
Q 004209 338 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 417 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~ 417 (768)
...++|+++|.+|+|||||+++|++..-. ....+++|.+.....+..++
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~ 54 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVT-------------------------------EQEAGGITQHIGAYQVTVND 54 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSS-------------------------------CSSCCSSSTTCCCCEEEETT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccc-------------------------------cCCCCceeEeeeEEEEEeCC
Confidence 35689999999999999999999842110 11123444444444556678
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccchh
Q 004209 418 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 497 (768)
Q Consensus 418 ~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~e 497 (768)
..+.||||||+++|...+...+..+|++|+|+|++.+. ..+..+.+..+...++| +++|+||+|+...+.+
T Consensus 55 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~--------~~~~~~~l~~~~~~~~p-~ilv~nK~Dl~~~~~~ 125 (178)
T 2lkc_A 55 KKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGV--------MPQTVEAINHAKAANVP-IIVAINKMDKPEANPD 125 (178)
T ss_dssp EEEEESCCCSSSSSSCSCCSSCCCCCEEEEEEETTCCC--------CHHHHHHHHHHGGGSCC-EEEEEETTTSSCSCHH
T ss_pred ceEEEEECCCCHHHHHHHHHHHhhCCEEEEEEECCCCC--------cHHHHHHHHHHHhCCCC-EEEEEECccCCcCCHH
Confidence 89999999999998877777888899999999998763 24566666666667888 8999999999863222
Q ss_pred hHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 498 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 498 ~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
.......+...+...++ ..++++++||++|.|+.+
T Consensus 126 ~~~~~~~~~~~~~~~~~---~~~~~~~~Sa~~~~gv~~ 160 (178)
T 2lkc_A 126 RVMQELMEYNLVPEEWG---GDTIFCKLSAKTKEGLDH 160 (178)
T ss_dssp HHHHHHTTTTCCBTTTT---SSEEEEECCSSSSHHHHH
T ss_pred HHHHHHHhcCcChhHcC---CcccEEEEecCCCCCHHH
Confidence 22111111111111111 125899999999999976
No 34
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.76 E-value=3e-18 Score=173.13 Aligned_cols=156 Identities=20% Similarity=0.194 Sum_probs=108.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEe-eCC
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD-SKN 417 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~-~~~ 417 (768)
..++|+++|++|+|||||+++|++.... ......+|+|.+.....+. .++
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~~~-----------------------------~~~~~~~~~t~~~~~~~~~~~~~ 78 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQKRL-----------------------------AFASKTPGRTQHINYFSVGPAAE 78 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCSSS-----------------------------SCTTCCCCSCCCEEEEEESCTTS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcc-----------------------------eeecCCCCcccceEEEEecCCCC
Confidence 4689999999999999999999853100 0112235667776666555 567
Q ss_pred eEEEEEeCCCcc-------------chHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEE
Q 004209 418 YHVVVLDSPGHK-------------DFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIV 484 (768)
Q Consensus 418 ~~i~lIDTPGh~-------------~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIV 484 (768)
..+.||||||+. .++...+.....+|++|+|+|++.+. .....+.+..+...++| +|+
T Consensus 79 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~--------~~~~~~~~~~l~~~~~p-~i~ 149 (223)
T 4dhe_A 79 PVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPL--------TELDRRMIEWFAPTGKP-IHS 149 (223)
T ss_dssp CSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCC--------CHHHHHHHHHHGGGCCC-EEE
T ss_pred CcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCC--------CHHHHHHHHHHHhcCCC-EEE
Confidence 899999999962 23444555566689999999998763 34556666777778888 899
Q ss_pred EEecccccccchhhHHHHHHHHhHHHhhc---CCCCCCCcEEEeecccCCCccc
Q 004209 485 AVNKMDAVQYSKDRFDSIKVQLGTFLRSC---GFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 485 VvNKmDlv~~s~e~~~~i~~el~~~lk~~---g~~~~~i~~IpVSA~tG~gI~e 535 (768)
|+||+|+.. .........++...+... +. ....+++++||++|.|+.+
T Consensus 150 v~nK~Dl~~--~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~SA~~g~gv~~ 200 (223)
T 4dhe_A 150 LLTKCDKLT--RQESINALRATQKSLDAYRDAGY-AGKLTVQLFSALKRTGLDD 200 (223)
T ss_dssp EEECGGGSC--HHHHHHHHHHHHHHHHHHHHHTC-CSCEEEEEEBTTTTBSHHH
T ss_pred EEeccccCC--hhhHHHHHHHHHHHHHhhhhccc-CCCCeEEEeecCCCcCHHH
Confidence 999999985 333333344444444332 11 1346899999999999976
No 35
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.75 E-value=4.1e-18 Score=191.69 Aligned_cols=155 Identities=18% Similarity=0.256 Sum_probs=112.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCe
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 418 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~ 418 (768)
..++|+++|++|+|||||+|+|++.... .....+|+|.+.....+..++.
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~------------------------------~~~~~~gtT~d~~~~~~~~~~~ 223 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERV------------------------------IVSNVAGTTRDAVDTSFTYNQQ 223 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTE------------------------------EEC---------CCEEEEETTE
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCce------------------------------eecCCCCceeeeeEEEEEECCe
Confidence 4589999999999999999999953211 1223478888887778888899
Q ss_pred EEEEEeCCCc----------cchHHH-HHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEe
Q 004209 419 HVVVLDSPGH----------KDFVPN-MISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVN 487 (768)
Q Consensus 419 ~i~lIDTPGh----------~~f~~~-~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvN 487 (768)
.+.||||||+ +.|... ++.++..+|++|+|+|++++. ..|..+++..+...+.+ +|+|+|
T Consensus 224 ~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~--------s~~~~~~~~~~~~~~~~-iiiv~N 294 (436)
T 2hjg_A 224 EFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGI--------IEQDKRIAGYAHEAGKA-VVIVVN 294 (436)
T ss_dssp EEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCC--------CHHHHHHHHHHHHTTCE-EEEEEE
T ss_pred EEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCC--------cHHHHHHHHHHHHcCCc-EEEEEE
Confidence 9999999998 444332 356788899999999999874 34666777777778887 899999
Q ss_pred cccccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCcccC
Q 004209 488 KMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTA 536 (768)
Q Consensus 488 KmDlv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e~ 536 (768)
|+|+.+.....++++.+++...+.... ..+++++||++|.|+.+.
T Consensus 295 K~Dl~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~SA~tg~~v~~l 339 (436)
T 2hjg_A 295 KWDAVDKDESTMKEFEENIRDHFQFLD----YAPILFMSALTKKRIHTL 339 (436)
T ss_dssp CGGGSCCCTTHHHHHHHHHHHHCGGGT----TSCEEECCTTTCTTGGGH
T ss_pred CccCCCcchHHHHHHHHHHHHhcccCC----CCCEEEEecccCCCHHHH
Confidence 999987544445566666666554433 358999999999999773
No 36
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.74 E-value=9.3e-18 Score=180.39 Aligned_cols=152 Identities=25% Similarity=0.300 Sum_probs=111.6
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeC-
Q 004209 338 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK- 416 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~- 416 (768)
.+.-.|+++|++|+|||||+|+|++....+ ....+++|.+.....+..+
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~~~~i------------------------------~s~~~~tT~~~~~~~~~~~~ 57 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGTKVSI------------------------------ISPKAGTTRMRVLGVKNIPN 57 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSC------------------------------CCSSSCCCCSCEEEEEEETT
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccc------------------------------cCCCCCceeeEEEEEEecCC
Confidence 356789999999999999999999542221 1223667777666677777
Q ss_pred CeEEEEEeCCCccc----------hHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHH-HHHHHHcCCCeEEEE
Q 004209 417 NYHVVVLDSPGHKD----------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREH-AQLIRSFGVDQLIVA 485 (768)
Q Consensus 417 ~~~i~lIDTPGh~~----------f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~-l~ll~~lgip~iIVV 485 (768)
+.+++||||||+.+ +...+...+..+|++|+|+|++.+. ..+.... +..+...++| +|+|
T Consensus 58 ~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~--------~~~~~~~~~~~l~~~~~p-vilV 128 (308)
T 3iev_A 58 EAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGW--------RPRDEEIYQNFIKPLNKP-VIVV 128 (308)
T ss_dssp TEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBS--------CHHHHHHHHHHTGGGCCC-EEEE
T ss_pred CCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCC--------CchhHHHHHHHHHhcCCC-EEEE
Confidence 99999999999844 4466677888999999999999763 3355555 6666677888 8999
Q ss_pred EecccccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 486 VNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 486 vNKmDlv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
+||+|+... .+.+.....++... ++ ...+++++||++|.|+.+
T Consensus 129 ~NK~Dl~~~-~~~~~~~~~~l~~~---~~---~~~~i~~vSA~~g~gv~~ 171 (308)
T 3iev_A 129 INKIDKIGP-AKNVLPLIDEIHKK---HP---ELTEIVPISALKGANLDE 171 (308)
T ss_dssp EECGGGSSS-GGGGHHHHHHHHHH---CT---TCCCEEECBTTTTBSHHH
T ss_pred EECccCCCC-HHHHHHHHHHHHHh---cc---CCCeEEEEeCCCCCCHHH
Confidence 999999831 33434444444443 22 235789999999999976
No 37
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.73 E-value=1.5e-17 Score=178.39 Aligned_cols=147 Identities=20% Similarity=0.219 Sum_probs=104.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCe
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 418 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~ 418 (768)
+..+|+|+|++|+|||||+|+|++....+. ...+++|.+.....+..++.
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~iv------------------------------s~~~~tTr~~i~~i~~~~~~ 55 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPI------------------------------SPRPQTTRKRLRGILTEGRR 55 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCC------------------------------CSSSCCCCSCEEEEEEETTE
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceeee------------------------------cCCCCceeEEEEEEEEeCCc
Confidence 457899999999999999999995432221 11234455444444556789
Q ss_pred EEEEEeCCCccc--------hHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHc--CCCeEEEEEec
Q 004209 419 HVVVLDSPGHKD--------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNK 488 (768)
Q Consensus 419 ~i~lIDTPGh~~--------f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~l--gip~iIVVvNK 488 (768)
+++||||||+.+ |......++..+|++|+|+|++.+. .......+..+... ++| +|+|+||
T Consensus 56 ~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~--------~~~~~~i~~~l~~~~~~~p-~ilV~NK 126 (301)
T 1wf3_A 56 QIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPP--------TPEDELVARALKPLVGKVP-ILLVGNK 126 (301)
T ss_dssp EEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCC--------CHHHHHHHHHHGGGTTTSC-EEEEEEC
T ss_pred EEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCC--------ChHHHHHHHHHHhhcCCCC-EEEEEEC
Confidence 999999999876 5667778889999999999998763 23445555566666 787 8999999
Q ss_pred ccccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 489 MDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 489 mDlv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
+|+... .. . +.+.+..+ .+ ..+++|+||++|.|+.+
T Consensus 127 ~Dl~~~--~~-~-~~~~~~~~---~~----~~~~~~iSA~~g~gv~~ 162 (301)
T 1wf3_A 127 LDAAKY--PE-E-AMKAYHEL---LP----EAEPRMLSALDERQVAE 162 (301)
T ss_dssp GGGCSS--HH-H-HHHHHHHT---ST----TSEEEECCTTCHHHHHH
T ss_pred cccCCc--hH-H-HHHHHHHh---cC----cCcEEEEeCCCCCCHHH
Confidence 999752 11 0 22222222 12 24689999999999965
No 38
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.73 E-value=3e-17 Score=158.62 Aligned_cols=150 Identities=17% Similarity=0.202 Sum_probs=101.0
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC
Q 004209 338 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 417 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~ 417 (768)
++.++|+++|+.|+|||||+++|++... .....+.++.+.....+..++
T Consensus 12 ~~~~~i~v~G~~~~GKssli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~ 60 (179)
T 2y8e_A 12 LRKFKLVFLGEQSVGKTSLITRFMYDSF-------------------------------DNTYQATIGIDFLSKTMYLED 60 (179)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCC-------------------------------CSSCCCCCSEEEEEEEEEETT
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCC-------------------------------CCCCCCceeeEEEEEEEEECC
Confidence 4568999999999999999999984211 111224445555445555554
Q ss_pred --eEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH---cCCCeEEEEEeccccc
Q 004209 418 --YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAV 492 (768)
Q Consensus 418 --~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~---lgip~iIVVvNKmDlv 492 (768)
..+.||||||+++|...+...+..+|++|+|+|++... .+. .....+..+.. .++| +++|+||+|+.
T Consensus 61 ~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~----~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~ 132 (179)
T 2y8e_A 61 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTN---SFH----QTSKWIDDVRTERGSDVI-IMLVGNKTDLS 132 (179)
T ss_dssp EEEEEEEEEECCSGGGGGGSHHHHHTCSEEEEEEETTCHH---HHH----THHHHHHHHHHHHTTSSE-EEEEEECGGGG
T ss_pred eEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHH---HHH----HHHHHHHHHHHhcCCCCc-EEEEEECCccc
Confidence 57999999999999888888889999999999998742 121 12222222222 3566 89999999997
Q ss_pred ccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 493 QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 493 ~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
+......+ +...+++..+ ++++++||++|.|+.+
T Consensus 133 ~~~~~~~~----~~~~~~~~~~-----~~~~~~Sa~~~~~i~~ 166 (179)
T 2y8e_A 133 DKRQVSTE----EGERKAKELN-----VMFIETSAKAGYNVKQ 166 (179)
T ss_dssp GGCCSCHH----HHHHHHHHHT-----CEEEEEBTTTTBSHHH
T ss_pred ccCcCCHH----HHHHHHHHcC-----CeEEEEeCCCCCCHHH
Confidence 53221112 2223333333 4789999999999976
No 39
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.73 E-value=3.4e-17 Score=155.73 Aligned_cols=143 Identities=21% Similarity=0.292 Sum_probs=100.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCeEE
Q 004209 341 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 420 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~~i 420 (768)
++|+++|..|+|||||+++|++..... ....+++|.+.....+...+..+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 51 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAV------------------------------VADVPGVTRDLKEGVVETDRGRF 51 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------------------------------------CCEEEEEEETTEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeee------------------------------ccCCCCceecceEEEEEeCCceE
Confidence 689999999999999999999532110 11224566666666677788899
Q ss_pred EEEeCCCccc-------hHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccc
Q 004209 421 VVLDSPGHKD-------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ 493 (768)
Q Consensus 421 ~lIDTPGh~~-------f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~ 493 (768)
.||||||+.+ +...+...+..+|++|+|+|++.+. .........++...++| +++|+||+|+.+
T Consensus 52 ~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~--------~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~ 122 (161)
T 2dyk_A 52 LLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAEL--------TQADYEVAEYLRRKGKP-VILVATKVDDPK 122 (161)
T ss_dssp EEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCC--------CHHHHHHHHHHHHHTCC-EEEEEECCCSGG
T ss_pred EEEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCcc--------cHhHHHHHHHHHhcCCC-EEEEEECccccc
Confidence 9999999887 4555667788999999999998752 22344555666667888 899999999975
Q ss_pred cchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 494 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 494 ~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
. . .++..+. ..++ .+++++||++|.|+.+
T Consensus 123 ~-~-------~~~~~~~-~~~~----~~~~~~Sa~~~~gv~~ 151 (161)
T 2dyk_A 123 H-E-------LYLGPLY-GLGF----GDPIPTSSEHARGLEE 151 (161)
T ss_dssp G-G-------GGCGGGG-GGSS----CSCEECBTTTTBSHHH
T ss_pred c-h-------HhHHHHH-hCCC----CCeEEEecccCCChHH
Confidence 3 1 2222333 3343 2679999999999976
No 40
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.72 E-value=1.3e-17 Score=188.51 Aligned_cols=154 Identities=18% Similarity=0.262 Sum_probs=117.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCe
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 418 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~ 418 (768)
..++|+++|++|+|||||+++|++.... .....+|+|.+.....+..++.
T Consensus 194 ~~~ki~ivG~~~vGKSslin~l~~~~~~------------------------------~~~~~~gtt~~~~~~~~~~~~~ 243 (456)
T 4dcu_A 194 EVIQFCLIGRPNVGKSSLVNAMLGEERV------------------------------IVSNVAGTTRDAVDTSFTYNQQ 243 (456)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTE------------------------------EECC------CTTSEEEEETTE
T ss_pred ccceeEEecCCCCCHHHHHHHHhCCCcc------------------------------ccCCCCCeEEEEEEEEEEECCc
Confidence 4689999999999999999999953211 1223367788776667778889
Q ss_pred EEEEEeCCC----------ccchHHH-HHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEe
Q 004209 419 HVVVLDSPG----------HKDFVPN-MISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVN 487 (768)
Q Consensus 419 ~i~lIDTPG----------h~~f~~~-~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvN 487 (768)
.+.|||||| +++|... ++.++..+|++|+|+|++.+. ..|..+++.++...++| +|+|+|
T Consensus 244 ~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~--------~~~~~~~~~~~~~~~~~-~ilv~N 314 (456)
T 4dcu_A 244 EFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGI--------IEQDKRIAGYAHEAGKA-VVIVVN 314 (456)
T ss_dssp EEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCC--------CHHHHHHHHHHHHTTCE-EEEEEE
T ss_pred eEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCc--------CHHHHHHHHHHHHcCCC-EEEEEE
Confidence 999999999 5666544 456788999999999999874 45788888888888988 899999
Q ss_pred cccccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 488 KMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 488 KmDlv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
|+|+.+.....++++.+.+...+...+ ..+++++||++|.|+.+
T Consensus 315 K~Dl~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~SA~~g~gv~~ 358 (456)
T 4dcu_A 315 KWDAVDKDESTMKEFEENIRDHFQFLD----YAPILFMSALTKKRIHT 358 (456)
T ss_dssp CGGGSCCCSSHHHHHHHHHHHHCGGGT----TSCEEECCTTTCTTGGG
T ss_pred ChhcCCCchHHHHHHHHHHHHhcccCC----CCCEEEEcCCCCcCHHH
Confidence 999987655566777777777665443 35899999999999976
No 41
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.72 E-value=6e-17 Score=162.85 Aligned_cols=164 Identities=16% Similarity=0.172 Sum_probs=102.3
Q ss_pred CcccccCCCCcCCCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccC
Q 004209 324 KPEKWMLPDKKGDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERG 403 (768)
Q Consensus 324 ~~e~~~~~~~~~~~~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~G 403 (768)
.++.|+...........++|+++|.+|+|||||+++|++..- .....+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~-------------------------------~~~~~~t 58 (201)
T 2ew1_A 10 HSSGLVPRGSMEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLF-------------------------------PPGQGAT 58 (201)
T ss_dssp ------------CCSEEEEEEEEESTTSSHHHHHHHHHHSSC-------------------------------CTTCCCC
T ss_pred ccccccCCCCccccccceEEEEECcCCCCHHHHHHHHHhCCC-------------------------------CCCCCCc
Confidence 455566555554555679999999999999999999984210 1111233
Q ss_pred eEEEEEEEEEeeCC--eEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH---cC
Q 004209 404 ITMTVAVAYFDSKN--YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FG 478 (768)
Q Consensus 404 iTid~~~~~~~~~~--~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~---lg 478 (768)
++.+.....+..++ ..+.||||||+++|...+...+..+|++|+|+|++... .+.. ....+..+.. .+
T Consensus 59 ~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~---s~~~----~~~~~~~i~~~~~~~ 131 (201)
T 2ew1_A 59 IGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEE---SFRC----LPEWLREIEQYASNK 131 (201)
T ss_dssp CSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCHH---HHHT----HHHHHHHHHHHSCTT
T ss_pred cceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHH---HHHH----HHHHHHHHHHhcCCC
Confidence 44444444555554 57899999999999988888899999999999998742 1211 1222233332 24
Q ss_pred CCeEEEEEecccccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 479 VDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 479 ip~iIVVvNKmDlv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
+| +++|+||+|+.+...... ++...+.+..+ ++++++||++|.|+.+
T Consensus 132 ~p-iilv~NK~Dl~~~~~v~~----~~~~~~~~~~~-----~~~~~~Sa~~g~gv~~ 178 (201)
T 2ew1_A 132 VI-TVLVGNKIDLAERREVSQ----QRAEEFSEAQD-----MYYLETSAKESDNVEK 178 (201)
T ss_dssp CE-EEEEEECGGGGGGCSSCH----HHHHHHHHHHT-----CCEEECCTTTCTTHHH
T ss_pred CC-EEEEEECCCCccccccCH----HHHHHHHHHcC-----CEEEEEeCCCCCCHHH
Confidence 55 899999999975211111 12223333333 4789999999999976
No 42
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.72 E-value=1.1e-17 Score=176.75 Aligned_cols=145 Identities=22% Similarity=0.249 Sum_probs=104.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCe
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 418 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~ 418 (768)
+.++|+++|++|+|||||+|+|++... .....+|+|++.....+...+.
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~-------------------------------~v~~~~g~t~~~~~~~~~~~~~ 50 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQ-------------------------------RVGNWAGVTVERKEGQFSTTDH 50 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCE-------------------------------EEEECTTSSSEEEEEEEECSSC
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCc-------------------------------ccCCCCCeeEEEEEEEEEeCCC
Confidence 468999999999999999999995311 1123378899988888888889
Q ss_pred EEEEEeCCCccchHH---------H---HHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEE
Q 004209 419 HVVVLDSPGHKDFVP---------N---MISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAV 486 (768)
Q Consensus 419 ~i~lIDTPGh~~f~~---------~---~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVv 486 (768)
.+.||||||+.+|.. . .......+|++|+|+|++.. ......+..+..+++| +|+|+
T Consensus 51 ~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~----------~~~~~~~~~l~~~~~p-~ivv~ 119 (274)
T 3i8s_A 51 QVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNL----------ERNLYLTLQLLELGIP-CIVAL 119 (274)
T ss_dssp EEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGGH----------HHHHHHHHHHHHHTCC-EEEEE
T ss_pred ceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCCh----------HHHHHHHHHHHhcCCC-EEEEE
Confidence 999999999877541 1 11223689999999999862 2344555666677998 89999
Q ss_pred ecccccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 487 NKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 487 NKmDlv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
||+|+.... ......+.+ .+.++ ++++++||++|.|+.+
T Consensus 120 NK~Dl~~~~--~~~~~~~~l---~~~lg-----~~~i~~SA~~g~gi~e 158 (274)
T 3i8s_A 120 NMLDIAEKQ--NIRIEIDAL---SARLG-----CPVIPLVSTRGRGIEA 158 (274)
T ss_dssp ECHHHHHHT--TEEECHHHH---HHHHT-----SCEEECCCGGGHHHHH
T ss_pred ECccchhhh--hHHHHHHHH---HHhcC-----CCEEEEEcCCCCCHHH
Confidence 999987521 111111222 23334 4789999999999976
No 43
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.72 E-value=4e-17 Score=158.16 Aligned_cols=151 Identities=14% Similarity=0.093 Sum_probs=99.6
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC
Q 004209 338 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 417 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~ 417 (768)
+..++|+++|++|+|||||+++|++..-. .+..+.++.+.....+...+
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~-------------------------------~~~~~t~~~~~~~~~~~~~~ 52 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFG-------------------------------KQYKQTIGLDFFLRRITLPG 52 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTT-------------------------------HHHHHTTTSSEEEEEEEETT
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCC-------------------------------CCCCCceeEEEEEEEEEeCC
Confidence 35689999999999999999999953110 01112222233333444444
Q ss_pred ---eEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH-----cCCCeEEEEEecc
Q 004209 418 ---YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-----FGVDQLIVAVNKM 489 (768)
Q Consensus 418 ---~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~-----lgip~iIVVvNKm 489 (768)
..+.||||||+++|...+...+..+|++|+|+|++.+. .++ .....+..+.. .+.|++++|+||+
T Consensus 53 ~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~----~~~~~~~~i~~~~~~~~~~~~iilv~nK~ 125 (178)
T 2hxs_A 53 NLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQ---SFE----NLEDWYTVVKKVSEESETQPLVALVGNKI 125 (178)
T ss_dssp TEEEEEEEEECTTCCTTCTTHHHHHTTCSEEEEEEETTCHH---HHH----THHHHHHHHHHHHHHHTCCCEEEEEEECG
T ss_pred CCEEEEEEEECCCCccccchhhHHHhhCCEEEEEEECCCHH---HHH----HHHHHHHHHHHHhcccCCCCeEEEEEEcc
Confidence 78999999999998888888889999999999998752 121 11222222222 2566678999999
Q ss_pred cccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 490 DAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 490 Dlv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
|+.+...... ++...+.+..+ ++++++||++|.|+.+
T Consensus 126 Dl~~~~~~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~ 162 (178)
T 2hxs_A 126 DLEHMRTIKP----EKHLRFCQENG-----FSSHFVSAKTGDSVFL 162 (178)
T ss_dssp GGGGGCSSCH----HHHHHHHHHHT-----CEEEEECTTTCTTHHH
T ss_pred ccccccccCH----HHHHHHHHHcC-----CcEEEEeCCCCCCHHH
Confidence 9975211111 22233333444 4789999999999976
No 44
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.72 E-value=3.6e-17 Score=155.72 Aligned_cols=152 Identities=16% Similarity=0.127 Sum_probs=97.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC-
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN- 417 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~- 417 (768)
+.++|+++|++|+|||||+++|++..-. ....+.++ +.....+...+
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-------------------------------~~~~~~~~-~~~~~~~~~~~~ 49 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFI-------------------------------EKYDPTIE-DFYRKEIEVDSS 49 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCC-------------------------------SCCCTTCC-EEEEEEEEETTE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCc-------------------------------ccCCCCcc-eeEEEEEEECCE
Confidence 4689999999999999999999953110 00001111 11122233333
Q ss_pred -eEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccch
Q 004209 418 -YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 496 (768)
Q Consensus 418 -~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~ 496 (768)
..+.||||||+++|...+...+..+|++++|+|++... .++.+.....+.+..+...++| +++|+||+|+.+..+
T Consensus 50 ~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~ 125 (167)
T 1kao_A 50 PSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQ---SFQDIKPMRDQIIRVKRYEKVP-VILVGNKVDLESERE 125 (167)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHH---HHHHHHHHHHHHHHHTTTSCCC-EEEEEECGGGGGGCC
T ss_pred EEEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCCCHH---HHHHHHHHHHHHHHhcCCCCCC-EEEEEECCccccccc
Confidence 55899999999999988888889999999999998742 1211111222222222223677 899999999975322
Q ss_pred hhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 497 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 497 e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
... .+...+.+..+ ++++++||++|.|+.+
T Consensus 126 ~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~ 155 (167)
T 1kao_A 126 VSS----SEGRALAEEWG-----CPFMETSAKSKTMVDE 155 (167)
T ss_dssp SCH----HHHHHHHHHHT-----SCEEEECTTCHHHHHH
T ss_pred CCH----HHHHHHHHHhC-----CCEEEecCCCCcCHHH
Confidence 111 22233333344 4789999999999976
No 45
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.72 E-value=1.9e-17 Score=163.41 Aligned_cols=151 Identities=17% Similarity=0.167 Sum_probs=101.5
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC
Q 004209 338 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 417 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~ 417 (768)
++.++|+++|++|+|||||+++|++..-. .. ...|+......+...+
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~-------------------------------~~--~~~t~~~~~~~~~~~~ 66 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFN-------------------------------ED--MIPTVGFNMRKITKGN 66 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCC-------------------------------CS--CCCCCSEEEEEEEETT
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCC-------------------------------Cc--cCCCCceeEEEEEeCC
Confidence 45689999999999999999999852110 00 1112223334456788
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHH-HHHH---HcCCCeEEEEEecccccc
Q 004209 418 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHA-QLIR---SFGVDQLIVAVNKMDAVQ 493 (768)
Q Consensus 418 ~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l-~ll~---~lgip~iIVVvNKmDlv~ 493 (768)
..+.||||||+++|...+...+..+|++|+|+|++... ++. ...+.+ .++. ..++| +++|+||+|+.+
T Consensus 67 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~---s~~----~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~ 138 (188)
T 1zd9_A 67 VTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQE---KIE----ASKNELHNLLDKPQLQGIP-VLVLGNKRDLPG 138 (188)
T ss_dssp EEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGG---GHH----HHHHHHHHHHTCGGGTTCC-EEEEEECTTSTT
T ss_pred EEEEEEECCCCHhHHHHHHHHHccCCEEEEEEECCCHH---HHH----HHHHHHHHHHhCcccCCCC-EEEEEECCCCcc
Confidence 99999999999999888888889999999999998742 111 222222 2222 14667 899999999975
Q ss_pred cchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 494 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 494 ~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
. ...+++.+.+... .+....++++++||++|.|+.+
T Consensus 139 ~--~~~~~~~~~~~~~----~~~~~~~~~~~~SA~~g~gv~~ 174 (188)
T 1zd9_A 139 A--LDEKELIEKMNLS----AIQDREICCYSISCKEKDNIDI 174 (188)
T ss_dssp C--CCHHHHHHHTTGG----GCCSSCEEEEECCTTTCTTHHH
T ss_pred C--CCHHHHHHHhChh----hhccCCeeEEEEECCCCCCHHH
Confidence 3 1222233332211 1122346789999999999976
No 46
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.72 E-value=9.4e-17 Score=157.58 Aligned_cols=150 Identities=17% Similarity=0.230 Sum_probs=104.8
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC
Q 004209 338 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 417 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~ 417 (768)
...++|+++|..|+|||||+++|++.... ......|+|........ +
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~------------------------------~~~~~~~~t~~~~~~~~---~ 67 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIA------------------------------FVSKTPGKTRSINFYLV---N 67 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCS------------------------------CCCSSCCCCCCEEEEEE---T
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCccc------------------------------cccCCCCCccCeEEEEE---C
Confidence 34689999999999999999999953210 01122444554443332 4
Q ss_pred eEEEEEeCCC----------ccchH---HHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEE
Q 004209 418 YHVVVLDSPG----------HKDFV---PNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIV 484 (768)
Q Consensus 418 ~~i~lIDTPG----------h~~f~---~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIV 484 (768)
..+.|||||| +..|. ...+..+..+|++++|+|++.+. .....+.+..+...++| +++
T Consensus 68 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~--------~~~~~~~~~~~~~~~~p-~i~ 138 (195)
T 3pqc_A 68 SKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPP--------QDSDLMMVEWMKSLNIP-FTI 138 (195)
T ss_dssp TTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCC--------CHHHHHHHHHHHHTTCC-EEE
T ss_pred CcEEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCC--------CHHHHHHHHHHHHcCCC-EEE
Confidence 5688999999 33343 34455556679999999998752 23455666777778888 899
Q ss_pred EEecccccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 485 AVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 485 VvNKmDlv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
|+||+|+.+ .+..+...+++..++...+ .++++++||++|.|+.+
T Consensus 139 v~nK~Dl~~--~~~~~~~~~~~~~~~~~~~----~~~~~~~Sa~~~~gv~~ 183 (195)
T 3pqc_A 139 VLTKMDKVK--MSERAKKLEEHRKVFSKYG----EYTIIPTSSVTGEGISE 183 (195)
T ss_dssp EEECGGGSC--GGGHHHHHHHHHHHHHSSC----CSCEEECCTTTCTTHHH
T ss_pred EEEChhcCC--hHHHHHHHHHHHHHHhhcC----CCceEEEecCCCCCHHH
Confidence 999999985 3444555666666665433 36889999999999976
No 47
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.71 E-value=2.2e-17 Score=158.62 Aligned_cols=150 Identities=23% Similarity=0.175 Sum_probs=100.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCe
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 418 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~ 418 (768)
+.++|+++|++|+|||||+++|++..- . + ...|+......+..++.
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~--~------------------------------~--~~~t~~~~~~~~~~~~~ 51 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEV--V------------------------------T--TIPTIGFNVETVTYKNL 51 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSC--C------------------------------C--CCCCSSEEEEEEEETTE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCC--C------------------------------C--cCCcCccceEEEEECCE
Confidence 468999999999999999999984210 0 0 11122233345556789
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH---cCCCeEEEEEecccccccc
Q 004209 419 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQYS 495 (768)
Q Consensus 419 ~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~---lgip~iIVVvNKmDlv~~s 495 (768)
.+.||||||+.+|...+...+..+|++|+|+|++.+. .+. ........++.. .++| +++|+||+|+.+.
T Consensus 52 ~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~- 123 (171)
T 1upt_A 52 KFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRD---RIG---ISKSELVAMLEEEELRKAI-LVVFANKQDMEQA- 123 (171)
T ss_dssp EEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCT---THH---HHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTC-
T ss_pred EEEEEECCCChhhhHHHHHHhccCCEEEEEEECCCHH---HHH---HHHHHHHHHHhchhhCCCE-EEEEEECCCCcCC-
Confidence 9999999999998887888889999999999998752 121 111122222222 3566 8999999999753
Q ss_pred hhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 496 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 496 ~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
...+++...+... .+....++++++||++|.|+.+
T Consensus 124 -~~~~~~~~~~~~~----~~~~~~~~~~~~Sa~~~~gi~~ 158 (171)
T 1upt_A 124 -MTSSEMANSLGLP----ALKDRKWQIFKTSATKGTGLDE 158 (171)
T ss_dssp -CCHHHHHHHHTGG----GCTTSCEEEEECCTTTCTTHHH
T ss_pred -CCHHHHHHHhCch----hccCCceEEEECcCCCCcCHHH
Confidence 2223333333211 1122346899999999999976
No 48
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.71 E-value=6.8e-17 Score=154.00 Aligned_cols=155 Identities=13% Similarity=0.157 Sum_probs=94.4
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC
Q 004209 338 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 417 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~ 417 (768)
++.++|+++|++|+|||||+++|++..- ... .....+.+.. ....+....
T Consensus 2 ~~~~~i~v~G~~~~GKssl~~~l~~~~~--~~~---------------------------~~~t~~~~~~-~~~~~~~~~ 51 (168)
T 1u8z_A 2 LALHKVIMVGSGGVGKSALTLQFMYDEF--VED---------------------------YEPTKADSYR-KKVVLDGEE 51 (168)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCC--CSC---------------------------CCTTCCEEEE-EEEEETTEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCcc--CCC---------------------------CCCCcceEEE-EEEEECCEE
Confidence 3568999999999999999999995310 000 0000111111 111222233
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccchh
Q 004209 418 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 497 (768)
Q Consensus 418 ~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~e 497 (768)
..+.||||||+.+|...+...+..+|++|+|+|++... .+........+........++| +++|+||+|+.+....
T Consensus 52 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~ 127 (168)
T 1u8z_A 52 VQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEME---SFAATADFREQILRVKEDENVP-FLLVGNKSDLEDKRQV 127 (168)
T ss_dssp EEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCHH---HHHHHHHHHHHHHHHHCCTTSC-EEEEEECGGGGGGCCS
T ss_pred EEEEEEECCCcchhHHHHHHHhhcCCEEEEEEECCCHH---HHHHHHHHHHHHHHhcCCCCCc-EEEEEECccccccCcc
Confidence 57899999999999988888899999999999998742 1221111111111111112667 8999999999753221
Q ss_pred hHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 498 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 498 ~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
.. ++...+++..+ ++++++||++|.|+.+
T Consensus 128 ~~----~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~ 156 (168)
T 1u8z_A 128 SV----EEAKNRADQWN-----VNYVETSAKTRANVDK 156 (168)
T ss_dssp CH----HHHHHHHHHHT-----CEEEECCTTTCTTHHH
T ss_pred CH----HHHHHHHHHcC-----CeEEEeCCCCCCCHHH
Confidence 12 23333444444 4789999999999976
No 49
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.71 E-value=5.5e-17 Score=159.91 Aligned_cols=150 Identities=19% Similarity=0.213 Sum_probs=104.1
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC
Q 004209 338 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 417 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~ 417 (768)
...++|+++|++|+|||||+++|++.. ...+..++++.+.....+..++
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~ 62 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDT-------------------------------YTESYISTIGVDFKIRTIELDG 62 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSC-------------------------------CCSCCCCCSSEEEEEEEEEETT
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCC-------------------------------CCCCCCCcccceEEEEEEEECC
Confidence 356899999999999999999998421 1112234555565555565555
Q ss_pred --eEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHc---CCCeEEEEEeccccc
Q 004209 418 --YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAV 492 (768)
Q Consensus 418 --~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~l---gip~iIVVvNKmDlv 492 (768)
..+.||||||+++|...+...+..+|++|+|+|++... .++ .....+..+... ++| +++|+||+|+.
T Consensus 63 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~----~~~~~~~~i~~~~~~~~p-~ilv~nK~Dl~ 134 (196)
T 3tkl_A 63 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQE---SFN----NVKQWLQEIDRYASENVN-KLLVGNKCDLT 134 (196)
T ss_dssp EEEEEEEEEECCSGGGCTTHHHHHTTCSEEEEEEETTCHH---HHH----THHHHHHHHHHHSCTTCE-EEEEEECTTCT
T ss_pred EEEEEEEEECCCcHhhhhhHHHHHhhCCEEEEEEECcCHH---HHH----HHHHHHHHHHHhcCCCCC-EEEEEECcccc
Confidence 67899999999999888888899999999999998742 121 222233333333 566 89999999997
Q ss_pred ccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 493 QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 493 ~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
+......+ +...+...++ ++++++||++|.|+.+
T Consensus 135 ~~~~~~~~----~~~~~~~~~~-----~~~~~~Sa~~g~gv~~ 168 (196)
T 3tkl_A 135 TKKVVDYT----TAKEFADSLG-----IPFLETSAKNATNVEQ 168 (196)
T ss_dssp TTCCSCHH----HHHHHHHHTT-----CCEEEECTTTCTTHHH
T ss_pred cccccCHH----HHHHHHHHcC-----CcEEEEeCCCCCCHHH
Confidence 53222211 2233333334 4789999999999976
No 50
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.71 E-value=2e-17 Score=173.40 Aligned_cols=151 Identities=22% Similarity=0.213 Sum_probs=108.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCeEE
Q 004209 341 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 420 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~~i 420 (768)
++|+++|++|+|||||+|+|++.. ......+|+|++.....+..++..+
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~-------------------------------~~v~~~pg~Tv~~~~~~~~~~~~~~ 50 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNAN-------------------------------QRVGNWPGVTVEKKTGEFLLGEHLI 50 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTS-------------------------------EEEEECTTSSSEEEEEEEEETTEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-------------------------------CCccCCCCceEEEEEEEEEECCeEE
Confidence 589999999999999999998531 1112237889888888888899999
Q ss_pred EEEeCCCccchHHH----------HHHhc--ccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEec
Q 004209 421 VVLDSPGHKDFVPN----------MISGA--TQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNK 488 (768)
Q Consensus 421 ~lIDTPGh~~f~~~----------~i~g~--~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNK 488 (768)
.||||||+..+... ....+ ..+|++|+|+|++.. .........+..+++| +|+|+||
T Consensus 51 ~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~~----------~~~~~l~~~l~~~~~p-vilv~NK 119 (256)
T 3iby_A 51 EITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACHL----------ERHLYLTSQLFELGKP-VVVALNM 119 (256)
T ss_dssp EEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGGH----------HHHHHHHHHHTTSCSC-EEEEEEC
T ss_pred EEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCCc----------hhHHHHHHHHHHcCCC-EEEEEEC
Confidence 99999998776431 12233 679999999999862 2344455566677888 8999999
Q ss_pred ccccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCcccCCCCcccccccCCcchhhhhhcc
Q 004209 489 MDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSL 558 (768)
Q Consensus 489 mDlv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e~~~~~~~~~wy~G~~LLe~L~~l 558 (768)
+|+..... .......+.. .++ ++++++||++|.|+.+ |++.|..+
T Consensus 120 ~Dl~~~~~--~~~~~~~l~~---~lg-----~~vi~~SA~~g~gi~e---------------l~~~i~~~ 164 (256)
T 3iby_A 120 MDIAEHRG--ISIDTEKLES---LLG-----CSVIPIQAHKNIGIPA---------------LQQSLLHC 164 (256)
T ss_dssp HHHHHHTT--CEECHHHHHH---HHC-----SCEEECBGGGTBSHHH---------------HHHHHHTC
T ss_pred hhcCCcCC--cHHHHHHHHH---HcC-----CCEEEEECCCCCCHHH---------------HHHHHHhh
Confidence 99875211 1111222333 334 4789999999999976 77777555
No 51
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.71 E-value=6.9e-17 Score=154.51 Aligned_cols=151 Identities=17% Similarity=0.209 Sum_probs=100.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCe
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 418 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~ 418 (768)
..++|+++|++|+|||||+++|++..-. .......|.+.......+.....
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~ 55 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKGQFH-----------------------------EFQESTIGAAFLTQTVCLDDTTV 55 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCC-----------------------------TTCCCCSSEEEEEEEEEETTEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCC-----------------------------CCCCCccceEEEEEEEEECCEEE
Confidence 4689999999999999999999952100 00112234444444444444467
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHc---CCCeEEEEEecccccccc
Q 004209 419 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAVQYS 495 (768)
Q Consensus 419 ~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~l---gip~iIVVvNKmDlv~~s 495 (768)
.+.||||||+.+|...+...+..+|++|+|+|++.+. .+ ......+..+... ++| +++|.||+|+.+..
T Consensus 56 ~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~----~~~~~~~~~~~~~~~~~~~-iilv~nK~Dl~~~~ 127 (170)
T 1r2q_A 56 KFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEE---SF----ARAKNWVKELQRQASPNIV-IALSGNKADLANKR 127 (170)
T ss_dssp EEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHH---HH----HHHHHHHHHHHHHSCTTCE-EEEEEECGGGGGGC
T ss_pred EEEEEeCCCcHHhhhhhHHhccCCCEEEEEEECCCHH---HH----HHHHHHHHHHHHhcCCCCc-EEEEEECccCcccc
Confidence 8999999999999888888889999999999998742 11 1222333333332 455 78889999997522
Q ss_pred hhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 496 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 496 ~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
.... ++...+.+..+ ++++++||++|.|+.+
T Consensus 128 ~~~~----~~~~~~~~~~~-----~~~~~~Sa~~g~gi~~ 158 (170)
T 1r2q_A 128 AVDF----QEAQSYADDNS-----LLFMETSAKTSMNVNE 158 (170)
T ss_dssp CSCH----HHHHHHHHHTT-----CEEEECCTTTCTTHHH
T ss_pred ccCH----HHHHHHHHHcC-----CeEEEEeCCCCCCHHH
Confidence 2111 22233333333 5789999999999976
No 52
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.71 E-value=5.1e-17 Score=160.40 Aligned_cols=162 Identities=15% Similarity=0.186 Sum_probs=102.3
Q ss_pred ccCCCCcCCCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEE
Q 004209 328 WMLPDKKGDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMT 407 (768)
Q Consensus 328 ~~~~~~~~~~~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid 407 (768)
++.....+.....++|+|+|++|+|||||+++|++..... ......|.+..
T Consensus 13 ~~~~~~~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~-----------------------------~~~~t~~~~~~ 63 (193)
T 2oil_A 13 GLVPRGSEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSH-----------------------------DSRTTIGVEFS 63 (193)
T ss_dssp -------CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCS-----------------------------SCCCCSSEEEE
T ss_pred ccccccccccCcceEEEEECcCCCCHHHHHHHHhcCCCCC-----------------------------CCCCccceeEE
Confidence 3344334444567999999999999999999999531110 00111233333
Q ss_pred EEEEEEeeCCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHc---CCCeEEE
Q 004209 408 VAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIV 484 (768)
Q Consensus 408 ~~~~~~~~~~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~l---gip~iIV 484 (768)
.....+......+.||||||+.+|...+...+..+|++|+|+|++... .+ ......+..+... ++| ++|
T Consensus 64 ~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~~~---s~----~~~~~~l~~i~~~~~~~~p-iil 135 (193)
T 2oil_A 64 TRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQ---TY----AVVERWLKELYDHAEATIV-VML 135 (193)
T ss_dssp EEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEEEEEETTCHH---HH----HTHHHHHHHHHTTSCTTCE-EEE
T ss_pred EEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECCCHH---HH----HHHHHHHHHHHHhcCCCCe-EEE
Confidence 333333344578899999999998888888889999999999998742 11 1222333333332 455 899
Q ss_pred EEecccccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 485 AVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 485 VvNKmDlv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
|+||+|+........ .+...+++..+ ++++++||++|.|+.+
T Consensus 136 v~nK~Dl~~~~~~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~ 177 (193)
T 2oil_A 136 VGNKSDLSQAREVPT----EEARMFAENNG-----LLFLETSALDSTNVEL 177 (193)
T ss_dssp EEECGGGGGGCCSCH----HHHHHHHHHTT-----CEEEEECTTTCTTHHH
T ss_pred EEECCCcccccccCH----HHHHHHHHHcC-----CEEEEEeCCCCCCHHH
Confidence 999999975322111 22333343433 5789999999999976
No 53
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.71 E-value=1.1e-16 Score=156.50 Aligned_cols=150 Identities=19% Similarity=0.225 Sum_probs=102.7
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC
Q 004209 338 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 417 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~ 417 (768)
...++|+++|++|+|||||+++|++... .....+.++.+.....+..++
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~ 56 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKF-------------------------------KDDSNHTIGVEFGSKIINVGG 56 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSC-------------------------------CTTCCCCSEEEEEEEEEEETT
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCC-------------------------------CCCCCCccceEEEEEEEEECC
Confidence 3468999999999999999999984311 111224445555555555555
Q ss_pred --eEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHH---HcCCCeEEEEEeccccc
Q 004209 418 --YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR---SFGVDQLIVAVNKMDAV 492 (768)
Q Consensus 418 --~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~---~lgip~iIVVvNKmDlv 492 (768)
..+.||||||+++|...+...+..+|++|+|+|++.+. .+.. ....+..+. ..++| ++||+||+|+.
T Consensus 57 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~----~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 128 (186)
T 2bme_A 57 KYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRE---TYNA----LTNWLTDARMLASQNIV-IILCGNKKDLD 128 (186)
T ss_dssp EEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCHH---HHHT----HHHHHHHHHHHSCTTCE-EEEEEECGGGG
T ss_pred EEEEEEEEeCCCcHHHHHHHHHHHhcCCEEEEEEECcCHH---HHHH----HHHHHHHHHHhcCCCCc-EEEEEECcccc
Confidence 68899999999999998999999999999999998742 1211 122222222 23565 89999999997
Q ss_pred ccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 493 QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 493 ~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
....... .+...+.+..+ ++++++||++|.|+.+
T Consensus 129 ~~~~~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~ 162 (186)
T 2bme_A 129 ADREVTF----LEASRFAQENE-----LMFLETSALTGENVEE 162 (186)
T ss_dssp GGCCSCH----HHHHHHHHHTT-----CEEEECCTTTCTTHHH
T ss_pred cccccCH----HHHHHHHHHcC-----CEEEEecCCCCCCHHH
Confidence 5222111 22233333333 5789999999999976
No 54
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.71 E-value=4.5e-17 Score=155.62 Aligned_cols=154 Identities=18% Similarity=0.170 Sum_probs=97.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEE-EEEEEeeCC
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTV-AVAYFDSKN 417 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~-~~~~~~~~~ 417 (768)
+.++|+++|++|+|||||+++|++.. .. .+..+.+.... ....+....
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~--~~-----------------------------~~~~~t~~~~~~~~~~~~~~~ 50 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGI--FV-----------------------------EKYDPTIEDSYRKQVEVDCQQ 50 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCC--CC-----------------------------CSCCCCSEEEEEEEEESSSCE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCC--CC-----------------------------CCCCCCccceEEEEEEECCEE
Confidence 46899999999999999999999421 00 00011111111 112223345
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccchh
Q 004209 418 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 497 (768)
Q Consensus 418 ~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~e 497 (768)
..+.||||||+.+|...+...+..+|++|+|+|++... .++.+..+..+........++| +++|+||+|+.+....
T Consensus 51 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~ 126 (167)
T 1c1y_A 51 CMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQS---TFNDLQDLREQILRVKDTEDVP-MILVGNKCDLEDERVV 126 (167)
T ss_dssp EEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHH---HHHTHHHHHHHHHHHHCCSCCC-EEEEEECTTCGGGCCS
T ss_pred EEEEEEECCChHHHHHHHHHHhccCCEEEEEEECCCHH---HHHHHHHHHHHHHHhhCcCCCc-EEEEEECccccccccC
Confidence 67899999999999888888888999999999998742 2222111112222211123677 8999999999753211
Q ss_pred hHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 498 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 498 ~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
.. +++..+.+.++ ..+++++||++|.|+.+
T Consensus 127 ~~----~~~~~~~~~~~----~~~~~~~Sa~~~~gi~~ 156 (167)
T 1c1y_A 127 GK----EQGQNLARQWC----NCAFLESSAKSKINVNE 156 (167)
T ss_dssp CH----HHHHHHHHHTT----SCEEEECBTTTTBSHHH
T ss_pred CH----HHHHHHHHHcc----CCcEEEecCCCCCCHHH
Confidence 11 22233333331 35789999999999976
No 55
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.71 E-value=1e-16 Score=160.36 Aligned_cols=158 Identities=17% Similarity=0.182 Sum_probs=100.0
Q ss_pred CCCcCCCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEE
Q 004209 331 PDKKGDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAV 410 (768)
Q Consensus 331 ~~~~~~~~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~ 410 (768)
+.........++|+++|.+|+|||||+++|++.. . ..+..+.++.+...
T Consensus 20 ~~~~~~~~~~~ki~vvG~~~vGKSsli~~l~~~~--~-----------------------------~~~~~~t~~~~~~~ 68 (201)
T 2hup_A 20 GDPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGA--F-----------------------------SERQGSTIGVDFTM 68 (201)
T ss_dssp ------CCEEEEEEEEECTTSSHHHHHHHHHHSC--C---------------------------------------CEEE
T ss_pred CCcccccccceEEEEECcCCCCHHHHHHHHhhCC--C-----------------------------CCCCCCCcceEEEE
Confidence 3333444557899999999999999999998421 0 01111223334444
Q ss_pred EEEeeCC--eEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH---cCCCeEEEE
Q 004209 411 AYFDSKN--YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVA 485 (768)
Q Consensus 411 ~~~~~~~--~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~---lgip~iIVV 485 (768)
..+..++ ..+.||||||+++|...+...+..+|++|+|+|++... .++ .....+..+.. .++| +|||
T Consensus 69 ~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~---s~~----~~~~~~~~i~~~~~~~~p-iilv 140 (201)
T 2hup_A 69 KTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRS---SFL----SVPHWIEDVRKYAGSNIV-QLLI 140 (201)
T ss_dssp EEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEEEEEETTBHH---HHH----THHHHHHHHHHHSCTTCE-EEEE
T ss_pred EEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCCHH---HHH----HHHHHHHHHHHhcCCCCC-EEEE
Confidence 4455555 58999999999999988888899999999999998642 121 22223333332 3455 8999
Q ss_pred EecccccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 486 VNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 486 vNKmDlv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
+||+|+.+..... .+++..+++..++ .+++++||++|.|+.+
T Consensus 141 ~NK~Dl~~~~~v~----~~~~~~~~~~~~~----~~~~~~SA~~g~gi~~ 182 (201)
T 2hup_A 141 GNKSDLSELREVS----LAEAQSLAEHYDI----LCAIETSAKDSSNVEE 182 (201)
T ss_dssp EECTTCGGGCCSC----HHHHHHHHHHTTC----SEEEECBTTTTBSHHH
T ss_pred EECCccccccccC----HHHHHHHHHHcCC----CEEEEEeCCCCCCHHH
Confidence 9999997521111 1233344444443 2789999999999976
No 56
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.71 E-value=7.1e-17 Score=156.79 Aligned_cols=150 Identities=20% Similarity=0.203 Sum_probs=99.8
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeE--EEEEEEEEee
Q 004209 338 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGIT--MTVAVAYFDS 415 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiT--id~~~~~~~~ 415 (768)
...++|+++|+.|+|||||+++|++..- ..+..+.++ .......+..
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~ 58 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKDQF-------------------------------VEFQESTIGAAFFSQTLAVND 58 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCC-------------------------------TTTSCCCSCCSEEEEEEEETT
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCC-------------------------------CCcCCCCceeEEEEEEEEECC
Confidence 4568999999999999999999984210 111112222 2222222323
Q ss_pred CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHc---CCCeEEEEEeccccc
Q 004209 416 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAV 492 (768)
Q Consensus 416 ~~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~l---gip~iIVVvNKmDlv 492 (768)
....+.||||||+.+|...+...+..+|++|+|+|++.+. .+ ....+.+..+... ++| ++||+||+|+.
T Consensus 59 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~----~~~~~~~~~~~~~~~~~~p-~i~v~nK~Dl~ 130 (181)
T 2efe_B 59 ATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQA---SF----ERAKKWVQELQAQGNPNMV-MALAGNKSDLL 130 (181)
T ss_dssp EEEEEEEEECCCSGGGGGGTHHHHTTCSEEEEEEETTCHH---HH----HHHHHHHHHHHHHSCTTCE-EEEEEECTTCT
T ss_pred EEEEEEEEeCCCChhhhhhhHHHhccCCEEEEEEECCCHH---HH----HHHHHHHHHHHHhcCCCCc-EEEEEECCccc
Confidence 3468999999999999888888889999999999998742 11 1223333334433 455 89999999997
Q ss_pred ccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 493 QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 493 ~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
+...... +++..+++..+ ++++++||++|.|+.+
T Consensus 131 ~~~~~~~----~~~~~~~~~~~-----~~~~~~Sa~~g~gi~~ 164 (181)
T 2efe_B 131 DARKVTA----EDAQTYAQENG-----LFFMETSAKTATNVKE 164 (181)
T ss_dssp TTCCSCH----HHHHHHHHHTT-----CEEEECCSSSCTTHHH
T ss_pred ccccCCH----HHHHHHHHHcC-----CEEEEEECCCCCCHHH
Confidence 5322111 23334444433 4789999999999976
No 57
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.71 E-value=9.8e-17 Score=157.75 Aligned_cols=100 Identities=17% Similarity=0.215 Sum_probs=69.7
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHH-HHcCCCeEEEEEecccccccch
Q 004209 418 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLI-RSFGVDQLIVAVNKMDAVQYSK 496 (768)
Q Consensus 418 ~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll-~~lgip~iIVVvNKmDlv~~s~ 496 (768)
..+.||||||+++|...+...+..+|++|+|+|++.+.. + ......+..+ ...++| +++|+||+| .....
T Consensus 93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s---~----~~~~~~~~~i~~~~~~p-iilv~NK~D-~~~~~ 163 (208)
T 3clv_A 93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNT---L----DRAKTWVNQLKISSNYI-IILVANKID-KNKFQ 163 (208)
T ss_dssp EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHH---H----HHHHHHHHHHHHHSCCE-EEEEEECTT-CC-CC
T ss_pred eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHH---H----HHHHHHHHHHHhhCCCc-EEEEEECCC-ccccc
Confidence 789999999999998888888999999999999987521 1 1122223223 334555 999999999 32112
Q ss_pred hhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 497 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 497 e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
... +++..+++..+ ++++++||++|.|+.+
T Consensus 164 ~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~ 193 (208)
T 3clv_A 164 VDI----LEVQKYAQDNN-----LLFIQTSAKTGTNIKN 193 (208)
T ss_dssp SCH----HHHHHHHHHTT-----CEEEEECTTTCTTHHH
T ss_pred CCH----HHHHHHHHHcC-----CcEEEEecCCCCCHHH
Confidence 222 33344444443 5889999999999976
No 58
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.71 E-value=4.1e-17 Score=163.02 Aligned_cols=163 Identities=17% Similarity=0.176 Sum_probs=97.4
Q ss_pred cccccCCCCcCCCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCe
Q 004209 325 PEKWMLPDKKGDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGI 404 (768)
Q Consensus 325 ~e~~~~~~~~~~~~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~Gi 404 (768)
++.++...........++|+|+|..|+|||||+++|++... .....+.+
T Consensus 10 ~~~~~~~~~~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~-------------------------------~~~~~~t~ 58 (200)
T 2o52_A 10 HSSGLVPRGSIWSDFLFKFLVIGSAGTGKSCLLHQFIENKF-------------------------------KQDSNHTI 58 (200)
T ss_dssp ------------CCEEEEEEEEESTTSSHHHHHHHHHC------------------------------------------
T ss_pred cccccccccccccCcceEEEEECcCCCCHHHHHHHHHhCCC-------------------------------CccCCCcc
Confidence 34444444444445679999999999999999999984211 01111333
Q ss_pred EEEEEEEEEeeCC--eEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH---cCC
Q 004209 405 TMTVAVAYFDSKN--YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGV 479 (768)
Q Consensus 405 Tid~~~~~~~~~~--~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~---lgi 479 (768)
+.+.....+..++ ..+.||||||+.+|...+...+..+|++|+|+|++.+. .+. .....+..+.. .++
T Consensus 59 ~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~----~~~~~~~~~~~~~~~~~ 131 (200)
T 2o52_A 59 GVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRE---TYN----SLAAWLTDARTLASPNI 131 (200)
T ss_dssp -CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEEEEEETTCHH---HHH----THHHHHHHHHHHTCTTC
T ss_pred cceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEEEEEECcCHH---HHH----HHHHHHHHHHHhcCCCC
Confidence 3333344444444 68999999999888777777888999999999998742 111 12222222222 256
Q ss_pred CeEEEEEecccccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 480 DQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 480 p~iIVVvNKmDlv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
| ++||+||+|+........ .+...+.+..+ ++++++||++|.|+.+
T Consensus 132 p-iilv~nK~Dl~~~~~v~~----~~~~~~~~~~~-----~~~~~~SA~~g~gi~~ 177 (200)
T 2o52_A 132 V-VILCGNKKDLDPEREVTF----LEASRFAQENE-----LMFLETSALTGENVEE 177 (200)
T ss_dssp E-EEEEEECGGGGGGCCSCH----HHHHHHHHHTT-----CEEEEECTTTCTTHHH
T ss_pred c-EEEEEECCCcccccccCH----HHHHHHHHHcC-----CEEEEEeCCCCCCHHH
Confidence 6 899999999975222111 22233333333 5789999999999976
No 59
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.71 E-value=4.2e-17 Score=157.94 Aligned_cols=149 Identities=19% Similarity=0.160 Sum_probs=101.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC-
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN- 417 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~- 417 (768)
..++|+++|++|+|||||+++|++.. ...+..++++.+.....+...+
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 56 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADNT-------------------------------FSGSYITTIGVDFKIRTVEINGE 56 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSCC----------------------------------CCTTTBSEEEEEEEEEETTE
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCC-------------------------------CCCccCCCceeEEEEEEEEECCE
Confidence 56899999999999999999998321 1112234556666666666666
Q ss_pred -eEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH-c-CCCeEEEEEeccccccc
Q 004209 418 -YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-F-GVDQLIVAVNKMDAVQY 494 (768)
Q Consensus 418 -~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~-l-gip~iIVVvNKmDlv~~ 494 (768)
..+.||||||+++|...+...+..+|++|+|+|++.+. .+. .....+..+.. . ++| +|+|+||+|+.+.
T Consensus 57 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~----~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~ 128 (181)
T 3tw8_B 57 KVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAE---SFV----NVKRWLHEINQNCDDVC-RILVGNKNDDPER 128 (181)
T ss_dssp EEEEEEEEETTGGGCSSCCGGGGTTCSEEEEEEETTCHH---HHH----HHHHHHHHHHHHCTTSE-EEEEEECTTCGGG
T ss_pred EEEEEEEcCCCchhhhhhHHHHhccCCEEEEEEECCCHH---HHH----HHHHHHHHHHHhCCCCC-EEEEEECCCCchh
Confidence 67999999999998877788889999999999998752 111 11222222222 2 355 8999999998753
Q ss_pred chhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 495 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 495 s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
..... .+...+....+ ++++++||++|.|+.+
T Consensus 129 ~~~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~ 160 (181)
T 3tw8_B 129 KVVET----EDAYKFAGQMG-----IQLFETSAKENVNVEE 160 (181)
T ss_dssp CCSCH----HHHHHHHHHHT-----CCEEECBTTTTBSHHH
T ss_pred cccCH----HHHHHHHHHcC-----CeEEEEECCCCCCHHH
Confidence 22111 22233333334 4789999999999976
No 60
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.70 E-value=9e-17 Score=159.11 Aligned_cols=152 Identities=16% Similarity=0.178 Sum_probs=104.6
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC
Q 004209 338 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 417 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~ 417 (768)
...++|+++|..|+|||||+++|++..-. .......|.+.......+....
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~ 71 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFD-----------------------------HNISPTIGASFMTKTVPCGNEL 71 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCC-----------------------------TTCCCCSSEEEEEEEEECSSSE
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCC-----------------------------CCcCCCcceeEEEEEEEeCCEE
Confidence 35689999999999999999999953100 0111224555555555555566
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHc---CCCeEEEEEeccccccc
Q 004209 418 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAVQY 494 (768)
Q Consensus 418 ~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~l---gip~iIVVvNKmDlv~~ 494 (768)
..+.||||||+++|...+...+..+|++|+|+|++... .+ ......+..+... ++| +++|+||+|+.+.
T Consensus 72 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~~~---s~----~~~~~~~~~i~~~~~~~~p-iiiv~NK~Dl~~~ 143 (192)
T 2fg5_A 72 HKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQD---SF----YTLKKWVKELKEHGPENIV-MAIAGNKCDLSDI 143 (192)
T ss_dssp EEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCTH---HH----HHHHHHHHHHHHHSCTTCE-EEEEEECGGGGGG
T ss_pred EEEEEEcCCCchhhHhhhHHhhccCCEEEEEEeCCCHH---HH----HHHHHHHHHHHHhCCCCCc-EEEEEECcccccc
Confidence 78999999999999888888889999999999998752 11 1223333333333 555 8999999999752
Q ss_pred chhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 495 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 495 s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
..... +++..+++..+ ++++++||++|.|+.+
T Consensus 144 ~~v~~----~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~ 175 (192)
T 2fg5_A 144 REVPL----KDAKEYAESIG-----AIVVETSAKNAINIEE 175 (192)
T ss_dssp CCSCH----HHHHHHHHTTT-----CEEEECBTTTTBSHHH
T ss_pred cccCH----HHHHHHHHHcC-----CEEEEEeCCCCcCHHH
Confidence 22111 23344444443 5789999999999976
No 61
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.70 E-value=8.6e-17 Score=159.41 Aligned_cols=152 Identities=17% Similarity=0.203 Sum_probs=100.1
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeC
Q 004209 337 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 416 (768)
Q Consensus 337 ~~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~ 416 (768)
....++|+++|..|+|||||+++|++... .....+.++.+.....+..+
T Consensus 23 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~-------------------------------~~~~~~t~~~~~~~~~~~~~ 71 (192)
T 2il1_A 23 ADFKLQVIIIGSRGVGKTSLMERFTDDTF-------------------------------CEACKSTVGVDFKIKTVELR 71 (192)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHCC---------------------------------------CCTTEEEEEEEEEET
T ss_pred cCCceEEEEECCCCCCHHHHHHHHhcCCC-------------------------------CcCCCCccceeEEEEEEEEC
Confidence 34568999999999999999999984210 01112333344444444444
Q ss_pred C--eEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHc---CCCeEEEEEecccc
Q 004209 417 N--YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDA 491 (768)
Q Consensus 417 ~--~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~l---gip~iIVVvNKmDl 491 (768)
+ ..+.||||||+++|...+...+..+|++|+|+|++.+. .+. .....+..+... ++| ++||+||+|+
T Consensus 72 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~---s~~----~~~~~~~~i~~~~~~~~p-iilV~NK~Dl 143 (192)
T 2il1_A 72 GKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKE---TFD----DLPKWMKMIDKYASEDAE-LLLVGNKLDC 143 (192)
T ss_dssp TEEEEEEEEEECCSGGGHHHHHHHHHHCSEEEEEEETTCHH---HHH----THHHHHHHHHHHSCTTCE-EEEEEECGGG
T ss_pred CeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHH---HHH----HHHHHHHHHHHhcCCCCc-EEEEEECccc
Confidence 4 57899999999999988888999999999999998752 111 122223333332 555 8999999999
Q ss_pred cccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 492 VQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 492 v~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
.+...... ++...+.+.+ ..++++++||++|.|+.+
T Consensus 144 ~~~~~v~~----~~~~~~~~~~----~~~~~~~~SA~~g~gi~~ 179 (192)
T 2il1_A 144 ETDREITR----QQGEKFAQQI----TGMRFCEASAKDNFNVDE 179 (192)
T ss_dssp GGGCCSCH----HHHHHHHHTS----TTCEEEECBTTTTBSHHH
T ss_pred ccccccCH----HHHHHHHHhc----CCCeEEEEeCCCCCCHHH
Confidence 75321111 1223333322 135789999999999976
No 62
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.70 E-value=6.1e-17 Score=159.93 Aligned_cols=155 Identities=20% Similarity=0.201 Sum_probs=101.6
Q ss_pred CCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEee
Q 004209 336 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 415 (768)
Q Consensus 336 ~~~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~ 415 (768)
.....++|+|+|..|+|||||+++|++..-.. .+ ...|+......+..
T Consensus 13 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~------------------------------~~--~~~t~~~~~~~~~~ 60 (199)
T 4bas_A 13 QSKTKLQVVMCGLDNSGKTTIINQVKPAQSSS------------------------------KH--ITATVGYNVETFEK 60 (199)
T ss_dssp ---CEEEEEEECCTTSCHHHHHHHHSCCC----------------------------------C--CCCCSSEEEEEEEE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhcCCCcc------------------------------cc--cccccceeEEEEEe
Confidence 34567899999999999999999998421000 00 01122233344567
Q ss_pred CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHc-----------CCCeEEE
Q 004209 416 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF-----------GVDQLIV 484 (768)
Q Consensus 416 ~~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~l-----------gip~iIV 484 (768)
.+..+.||||||+++|...+...+..+|++|+|+|++.+. .|. ...+.+..+... ++| +||
T Consensus 61 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~---s~~----~~~~~~~~~~~~~~~~~~~~~~~~~p-iil 132 (199)
T 4bas_A 61 GRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHL---RLC----VVKSEIQAMLKHEDIRRELPGGGRVP-FLF 132 (199)
T ss_dssp TTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEETTCGG---GHH----HHHHHHHHHHTSHHHHSBCTTSCBCC-EEE
T ss_pred CCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCcHH---HHH----HHHHHHHHHHhChhhhhcccccCCCC-EEE
Confidence 8899999999999999888888899999999999999752 121 222222222221 677 899
Q ss_pred EEecccccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 485 AVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 485 VvNKmDlv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
|+||+|+... ...+++...+..... .....++++++||++|.|+.+
T Consensus 133 v~NK~Dl~~~--~~~~~~~~~~~~~~~---~~~~~~~~~~~Sa~~g~gv~~ 178 (199)
T 4bas_A 133 FANKMDAAGA--KTAAELVEILDLTTL---MGDHPFVIFASNGLKGTGVHE 178 (199)
T ss_dssp EEECTTSTTC--CCHHHHHHHHTHHHH---HTTSCEEEEECBTTTTBTHHH
T ss_pred EEECcCCCCC--CCHHHHHHHhcchhh---ccCCeeEEEEeeCCCccCHHH
Confidence 9999999863 223334333331110 011346899999999999976
No 63
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.70 E-value=1.1e-16 Score=155.22 Aligned_cols=151 Identities=17% Similarity=0.151 Sum_probs=93.9
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC
Q 004209 338 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 417 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~ 417 (768)
...++|+++|++|+|||||+++|++.... .....++++.+.....+..++
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~------------------------------~~~~~~t~~~~~~~~~~~~~~ 57 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFL------------------------------AGTFISTVGIDFRNKVLDVDG 57 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCC------------------------------CCCCCCCCSCEEEEEEEEETT
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCC------------------------------CCCcCCceeeEEEEEEEEECC
Confidence 45689999999999999999999853110 011123344444444444444
Q ss_pred --eEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH---cCCCeEEEEEeccccc
Q 004209 418 --YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAV 492 (768)
Q Consensus 418 --~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~---lgip~iIVVvNKmDlv 492 (768)
..+.||||||+++|...+...+..+|++|+|+|++.+. .++ ...+.+..+.. .++| +++|+||+|+.
T Consensus 58 ~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~~----~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~ 129 (180)
T 2g6b_A 58 VKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKA---SFD----NIQAWLTEIHEYAQHDVA-LMLLGNKVDSA 129 (180)
T ss_dssp EEEEEEEEECCCC--------CCGGGCSEEEEEEETTCHH---HHH----THHHHHHHHHHHSCTTCE-EEEEEECCSTT
T ss_pred EEEEEEEEeCCCcHHHHHHHHHHccCCCEEEEEEECCCHH---HHH----HHHHHHHHHHHhCCCCCc-EEEEEECcccC
Confidence 47899999999999888888899999999999998752 111 12223333333 3566 89999999998
Q ss_pred ccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 493 QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 493 ~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
....... .+...+.+..+ ++++++||++|.|+.+
T Consensus 130 ~~~~~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~ 163 (180)
T 2g6b_A 130 HERVVKR----EDGEKLAKEYG-----LPFMETSAKTGLNVDL 163 (180)
T ss_dssp SCCCSCH----HHHHHHHHHHT-----CCEEECCTTTCTTHHH
T ss_pred cccccCH----HHHHHHHHHcC-----CeEEEEeCCCCCCHHH
Confidence 5321111 12233333334 4789999999999976
No 64
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.70 E-value=1.5e-16 Score=152.19 Aligned_cols=154 Identities=18% Similarity=0.208 Sum_probs=98.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCe
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 418 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~ 418 (768)
+.++|+++|+.|+|||||+++|++..-.. ......|.+.......+.....
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~ 52 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAE-----------------------------NKEPTIGAAFLTQRVTINEHTV 52 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCT-----------------------------TCCCCSSEEEEEEEEEETTEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCC-----------------------------CCCCccceeEEEEEEEECCEEE
Confidence 45899999999999999999998531100 0011123333333333333445
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH---cCCCeEEEEEecccccccc
Q 004209 419 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQYS 495 (768)
Q Consensus 419 ~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~---lgip~iIVVvNKmDlv~~s 495 (768)
.+.||||||+.+|...+...+..+|++|+|+|++.+. .+ ......+..+.. .++| +++|+||+|+....
T Consensus 53 ~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~----~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~ 124 (170)
T 1ek0_A 53 KFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQ---SF----IKARHWVKELHEQASKDII-IALVGNKIDXLQEG 124 (170)
T ss_dssp EEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHH---HH----HHHHHHHHHHHHHSCTTCE-EEEEEECGGGGGSS
T ss_pred EEEEEECCCChhhhhhhhhhhccCcEEEEEEecCChH---HH----HHHHHHHHHHHHhcCCCCc-EEEEEECCCccccc
Confidence 8999999999999888888889999999999998742 11 122222222222 2555 89999999997531
Q ss_pred hhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 496 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 496 ~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
..+ +...++...+.+..+ ++++++||++|.|+.+
T Consensus 125 ~~~-~v~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~ 158 (170)
T 1ek0_A 125 GER-KVAREEGEKLAEEKG-----LLFFETSAKTGENVND 158 (170)
T ss_dssp CCC-CSCHHHHHHHHHHHT-----CEEEECCTTTCTTHHH
T ss_pred ccc-CCCHHHHHHHHHHcC-----CEEEEEeCCCCCCHHH
Confidence 101 001122233333334 4789999999999976
No 65
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.70 E-value=1.1e-16 Score=155.75 Aligned_cols=154 Identities=12% Similarity=0.133 Sum_probs=98.3
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeC
Q 004209 337 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 416 (768)
Q Consensus 337 ~~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~ 416 (768)
.++.++|+++|+.|+|||||+++|++.. +. ... ..++.......+...
T Consensus 15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~--~~-----------------------------~~~-~~t~~~~~~~~~~~~ 62 (187)
T 2a9k_A 15 SLALHKVIMVGSGGVGKSALTLQFMYDE--FV-----------------------------EDY-EPTKADSYRKKVVLD 62 (187)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHSC--CC-----------------------------CSC-CTTCCEEEEEEEEET
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCC--CC-----------------------------CcC-CCccceEEEEEEEEC
Confidence 3567999999999999999999999531 00 000 111111112223333
Q ss_pred C--eEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEeccccccc
Q 004209 417 N--YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 494 (768)
Q Consensus 417 ~--~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~ 494 (768)
+ ..+.||||||+.+|...+...+..+|++|+|+|++... .+..+.....+........++| ++||+||+|+.+.
T Consensus 63 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~ 138 (187)
T 2a9k_A 63 GEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEME---SFAATADFREQILRVKEDENVP-FLLVGNKSDLEDK 138 (187)
T ss_dssp TEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHH---HHHHHHHHHHHHHHHHCCTTCC-EEEEEECGGGGGG
T ss_pred CEEEEEEEEECCCCcccHHHHHHHhccCCEEEEEEECcCHH---HHHHHHHHHHHHHHhcCCCCCC-EEEEEECcccccc
Confidence 3 57899999999999988888899999999999998742 1211111112222222223677 8999999999753
Q ss_pred chhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 495 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 495 s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
..... .++..+++.++ ++++++||++|.|+.+
T Consensus 139 ~~~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~ 170 (187)
T 2a9k_A 139 RQVSV----EEAKNRAEQWN-----VNYVETSAKTRANVDK 170 (187)
T ss_dssp CCSCH----HHHHHHHHHTT-----CEEEECCTTTCTTHHH
T ss_pred CccCH----HHHHHHHHHcC-----CeEEEeCCCCCCCHHH
Confidence 22222 23334444444 4789999999999976
No 66
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.70 E-value=2.4e-16 Score=154.20 Aligned_cols=150 Identities=12% Similarity=0.097 Sum_probs=99.4
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEE-EEEEeeC
Q 004209 338 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVA-VAYFDSK 416 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~-~~~~~~~ 416 (768)
...++|+++|++|+|||||+++|++..- .....+.++.+.. ...+...
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~~~~-------------------------------~~~~~~t~~~~~~~~~~~~~~ 57 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTDGKF-------------------------------NSKFITTVGIDFREKRVVYRA 57 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCC-------------------------------CCSCCCCCSEEEEEEEEEECT
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcCCC-------------------------------CcCcccccceeeeeEEEEEec
Confidence 3468999999999999999999995210 0011122222222 2233333
Q ss_pred -----------CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH----cCCCe
Q 004209 417 -----------NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS----FGVDQ 481 (768)
Q Consensus 417 -----------~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~----lgip~ 481 (768)
...+.||||||+++|...+...+..+|++|+|+|++.+. .+ ......+..+.. .++|
T Consensus 58 ~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~----~~~~~~~~~i~~~~~~~~~p- 129 (195)
T 3bc1_A 58 NGPDGAVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQ---SF----LNVRNWISQLQMHAYSENPD- 129 (195)
T ss_dssp TSCCCSSCCCEEEEEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHH---HH----HTHHHHHHHHHHHSSSSSCC-
T ss_pred CCcccccccCcEEEEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHH---HH----HHHHHHHHHHHHhcCCCCCC-
Confidence 458999999999999999999999999999999998752 11 122233333332 3666
Q ss_pred EEEEEecccccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 482 LIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 482 iIVVvNKmDlv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
+++|+||+|+.+..... .+++..+.+..+ ++++++||++|.|+.+
T Consensus 130 iilv~nK~Dl~~~~~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~ 174 (195)
T 3bc1_A 130 IVLCGNKSDLEDQRAVK----EEEARELAEKYG-----IPYFETSAANGTNISH 174 (195)
T ss_dssp EEEEEECTTCGGGCCSC----HHHHHHHHHHHT-----CCEEECCTTTCTTHHH
T ss_pred EEEEEECcccccccccC----HHHHHHHHHHcC-----CCEEEEECCCCCCHHH
Confidence 89999999997521111 122333443444 4789999999999976
No 67
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.70 E-value=6.9e-17 Score=154.33 Aligned_cols=147 Identities=20% Similarity=0.178 Sum_probs=97.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCeEE
Q 004209 341 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 420 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~~i 420 (768)
++|+++|++|+|||||+++|++..-. . ..+ |+......+...+..+
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~---------------------------~-----~~~--t~~~~~~~~~~~~~~~ 46 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIV---------------------------T-----TIP--TIGFNVETVEYKNISF 46 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSS---------------------------C-----CCC--CSSCCEEEEECSSCEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcC---------------------------c-----ccC--cCceeEEEEEECCEEE
Confidence 48999999999999999999852100 0 001 2222233455578899
Q ss_pred EEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH----cCCCeEEEEEecccccccch
Q 004209 421 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS----FGVDQLIVAVNKMDAVQYSK 496 (768)
Q Consensus 421 ~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~----lgip~iIVVvNKmDlv~~s~ 496 (768)
.||||||+++|...+...+..+|++|+|+|++... .|. ...+.+..+.. .++| +++|+||+|+.+.
T Consensus 47 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~----~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~-- 116 (164)
T 1r8s_A 47 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRE---RVN----EAREELMRMLAEDELRDAV-LLVFANKQDLPNA-- 116 (164)
T ss_dssp EEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGG---GHH----HHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTC--
T ss_pred EEEEcCCChhhHHHHHHHhccCCEEEEEEECCCHH---HHH----HHHHHHHHHHhchhhcCCe-EEEEEECcCCcCC--
Confidence 99999999999888888899999999999998752 121 11222222211 2565 8999999999752
Q ss_pred hhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 497 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 497 e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
...+++...+... .+....++++++||++|.|+.+
T Consensus 117 ~~~~~~~~~~~~~----~~~~~~~~~~~~Sa~~~~gi~~ 151 (164)
T 1r8s_A 117 MNAAEITDKLGLH----SLRHRNWYIQATCATSGDGLYE 151 (164)
T ss_dssp CCHHHHHHHTTGG----GCSSCCEEEEECBTTTTBTHHH
T ss_pred CCHHHHHHHhCcc----cccCccEEEEEcccCCCcCHHH
Confidence 2223333333211 1122346789999999999976
No 68
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.70 E-value=7.1e-17 Score=156.21 Aligned_cols=152 Identities=13% Similarity=0.166 Sum_probs=98.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC-
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN- 417 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~- 417 (768)
..++|+++|.+|+|||||+++|++..- .....+.++.+.....+..++
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~ 54 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNKF-------------------------------DTQLFHTIGVEFLNKDLEVDGH 54 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCC-------------------------------CC----CCSEEEEEEEEEETTE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCC-------------------------------CCCCCCceeeeEEEEEEEECCE
Confidence 468999999999999999999984211 011123333444444444454
Q ss_pred -eEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH----cCCCeEEEEEeccccc
Q 004209 418 -YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS----FGVDQLIVAVNKMDAV 492 (768)
Q Consensus 418 -~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~----lgip~iIVVvNKmDlv 492 (768)
..+.||||||+.+|...+...+..+|++|+|+|++.+. .+..+... .+.+..... .++| +++|+||+|+.
T Consensus 55 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~~~~-~~~~~~~~~~~~~~~~p-~i~v~nK~Dl~ 129 (177)
T 1wms_A 55 FVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQ---SFQNLSNW-KKEFIYYADVKEPESFP-FVILGNKIDIS 129 (177)
T ss_dssp EEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCHH---HHHTHHHH-HHHHHHHHTCSCTTTSC-EEEEEECTTCS
T ss_pred EEEEEEEeCCCchhhhhhHHHHHhcCCEEEEEEECcCHH---HHHHHHHH-HHHHHHHccccccCCCc-EEEEEECCccc
Confidence 58999999999999988888899999999999998752 12211111 111111111 4566 89999999987
Q ss_pred ccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 493 QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 493 ~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
.. ....+ ++..+++.. ..++++++||++|.|+.+
T Consensus 130 ~~-~~~~~----~~~~~~~~~----~~~~~~~~Sa~~~~gi~~ 163 (177)
T 1wms_A 130 ER-QVSTE----EAQAWCRDN----GDYPYFETSAKDATNVAA 163 (177)
T ss_dssp SC-SSCHH----HHHHHHHHT----TCCCEEECCTTTCTTHHH
T ss_pred cc-ccCHH----HHHHHHHhc----CCceEEEEeCCCCCCHHH
Confidence 31 11122 223333211 235789999999999976
No 69
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.69 E-value=8.6e-17 Score=158.92 Aligned_cols=156 Identities=17% Similarity=0.135 Sum_probs=100.8
Q ss_pred CCcCCCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEE
Q 004209 332 DKKGDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVA 411 (768)
Q Consensus 332 ~~~~~~~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~ 411 (768)
.........++|+++|+.|+|||||+++|++..-. ....+.++.+....
T Consensus 13 ~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~-------------------------------~~~~~t~~~~~~~~ 61 (191)
T 2a5j_A 13 GLVPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQ-------------------------------PVHDLTIGVEFGAR 61 (191)
T ss_dssp CCCCTTCEEEEEEEESSTTSSHHHHHHHHHHSCCC-------------------------------C-----CCSSEEEE
T ss_pred ccccccCcceEEEEECcCCCCHHHHHHHHhcCCCC-------------------------------CCCCCcccceeEEE
Confidence 33444456799999999999999999999953111 01112222222333
Q ss_pred EEeeCC--eEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHc---CCCeEEEEE
Q 004209 412 YFDSKN--YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAV 486 (768)
Q Consensus 412 ~~~~~~--~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~l---gip~iIVVv 486 (768)
.+..++ ..+.||||||+++|...+...+..+|++|+|+|++... .+. .....+..+... ++| ++||+
T Consensus 62 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~~----~~~~~l~~i~~~~~~~~p-iilv~ 133 (191)
T 2a5j_A 62 MVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE---TFN----HLTSWLEDARQHSSSNMV-IMLIG 133 (191)
T ss_dssp EEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHH---HHH----THHHHHHHHHHHSCTTCE-EEEEE
T ss_pred EEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEEEEEECCCHH---HHH----HHHHHHHHHHHhcCCCCC-EEEEE
Confidence 333343 58899999999998877778888999999999998742 111 222333333332 565 89999
Q ss_pred ecccccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 487 NKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 487 NKmDlv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
||+|+.+...... ++...+.+..+ ++++++||++|.|+.+
T Consensus 134 nK~Dl~~~~~v~~----~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~ 173 (191)
T 2a5j_A 134 NKSDLESRRDVKR----EEGEAFAREHG-----LIFMETSAKTACNVEE 173 (191)
T ss_dssp ECTTCGGGCCSCH----HHHHHHHHHHT-----CEEEEECTTTCTTHHH
T ss_pred ECcccCCccccCH----HHHHHHHHHcC-----CEEEEEeCCCCCCHHH
Confidence 9999975211111 22333444444 4789999999999976
No 70
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.69 E-value=2.6e-17 Score=159.53 Aligned_cols=152 Identities=18% Similarity=0.153 Sum_probs=88.2
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeC-
Q 004209 338 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK- 416 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~- 416 (768)
...++|+++|+.|+|||||+++|++..- .....+.++.+.....+..+
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~ 54 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVNDKY-------------------------------SQQYKATIGADFLTKEVTVDG 54 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCC-------------------------------CTTC---CCCSCEEEEECCSS
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCcC-------------------------------CcccCCccceEEEEEEEEEcC
Confidence 3568999999999999999999995311 01111223333333344433
Q ss_pred --CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH-------cCCCeEEEEEe
Q 004209 417 --NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-------FGVDQLIVAVN 487 (768)
Q Consensus 417 --~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~-------lgip~iIVVvN 487 (768)
...+.||||||+++|...+...+..+|++|+|+|++.+. .++. ....+..+.. .++| +++|+|
T Consensus 55 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~----~~~~~~~~~~~~~~~~~~~~p-~ilv~n 126 (182)
T 1ky3_A 55 DKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNAS---SFEN----IKSWRDEFLVHANVNSPETFP-FVILGN 126 (182)
T ss_dssp SCCEEEEEECCC----------CCSTTCCEEEEEEETTCHH---HHHT----HHHHHHHHHHHHCCSCTTTCC-EEEEEE
T ss_pred CcEEEEEEEECCCChHhhhhhHHHhhcCCEEEEEEECCChH---HHHH----HHHHHHHHHHHhcccCcCCCc-EEEEEE
Confidence 468999999999999888888899999999999998752 1211 1222221111 4566 899999
Q ss_pred cccccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 488 KMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 488 KmDlv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
|+|+........ ..++..+.+.. ..++++++||++|.|+.+
T Consensus 127 K~Dl~~~~~~v~---~~~~~~~~~~~----~~~~~~~~Sa~~~~gi~~ 167 (182)
T 1ky3_A 127 KIDAEESKKIVS---EKSAQELAKSL----GDIPLFLTSAKNAINVDT 167 (182)
T ss_dssp CTTSCGGGCCSC---HHHHHHHHHHT----TSCCEEEEBTTTTBSHHH
T ss_pred CCccccccccCC---HHHHHHHHHhc----CCCeEEEEecCCCCCHHH
Confidence 999964211111 11222232211 235789999999999976
No 71
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.69 E-value=1.9e-16 Score=156.18 Aligned_cols=150 Identities=18% Similarity=0.247 Sum_probs=97.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCe
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 418 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~ 418 (768)
..++|+++|.+|+|||||+++|++.... .......|+|.......+ +.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-----------------------------~~~~~~~~~t~~~~~~~~---~~ 69 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRKNL-----------------------------ARTSSKPGKTQTLNFYII---ND 69 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC------------------------------------------CCEEEEEE---TT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCc-----------------------------cccCCCCCceeeEEEEEE---CC
Confidence 4689999999999999999999842100 001122445555444333 33
Q ss_pred EEEEEeCCC----------ccchHHHHHHhcc---cCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEE
Q 004209 419 HVVVLDSPG----------HKDFVPNMISGAT---QSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVA 485 (768)
Q Consensus 419 ~i~lIDTPG----------h~~f~~~~i~g~~---~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVV 485 (768)
.+.|||||| ++.|...+...+. .+|++|+|+|++.+. .....+.+.++...++| +++|
T Consensus 70 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~--------~~~~~~~~~~~~~~~~p-~i~v 140 (195)
T 1svi_A 70 ELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAP--------SNDDVQMYEFLKYYGIP-VIVI 140 (195)
T ss_dssp TEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCC--------CHHHHHHHHHHHHTTCC-EEEE
T ss_pred cEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCC--------CHHHHHHHHHHHHcCCC-EEEE
Confidence 799999999 5555544444444 449999999998763 23344455666677888 8999
Q ss_pred EecccccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 486 VNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 486 vNKmDlv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
+||+|+.+ ........+++.+.+. . ....+++++||++|.|+.+
T Consensus 141 ~nK~Dl~~--~~~~~~~~~~~~~~~~---~-~~~~~~~~~Sa~~~~gv~~ 184 (195)
T 1svi_A 141 ATKADKIP--KGKWDKHAKVVRQTLN---I-DPEDELILFSSETKKGKDE 184 (195)
T ss_dssp EECGGGSC--GGGHHHHHHHHHHHHT---C-CTTSEEEECCTTTCTTHHH
T ss_pred EECcccCC--hHHHHHHHHHHHHHHc---c-cCCCceEEEEccCCCCHHH
Confidence 99999986 3334444445554332 1 1346899999999999976
No 72
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.69 E-value=7.5e-17 Score=155.97 Aligned_cols=145 Identities=20% Similarity=0.247 Sum_probs=93.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCe
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 418 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~ 418 (768)
+.++|+++|++|+|||||+++|++.... ....+|+|++.....+..++.
T Consensus 2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~-------------------------------~~~~~~~t~~~~~~~~~~~~~ 50 (165)
T 2wji_A 2 KSYEIALIGNPNVGKSTIFNALTGENVY-------------------------------IGNWPGVTVEKKEGEFEYNGE 50 (165)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHCCSSS-------------------------------CC-----CCCCCEEEEEETTE
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCee-------------------------------ccCCCCcceeeeEEEEEECCc
Confidence 4579999999999999999999842110 011245565555555666788
Q ss_pred EEEEEeCCCccchH------HHHHHhc--ccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEeccc
Q 004209 419 HVVVLDSPGHKDFV------PNMISGA--TQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 490 (768)
Q Consensus 419 ~i~lIDTPGh~~f~------~~~i~g~--~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmD 490 (768)
.+.+|||||+.+|. ......+ ..+|++++|+|++.. ......+..+...++| +|+|.||+|
T Consensus 51 ~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~----------~~~~~~~~~~~~~~~p-~ilv~nK~D 119 (165)
T 2wji_A 51 KFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATAL----------ERNLYLTLQLMEMGAN-LLLALNKMD 119 (165)
T ss_dssp EEEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCH----------HHHHHHHHHHHHTTCC-EEEEEECHH
T ss_pred EEEEEECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCch----------hHhHHHHHHHHhcCCC-EEEEEEchH
Confidence 99999999988763 1112222 379999999999852 1222333344456888 899999999
Q ss_pred ccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 491 AVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 491 lv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
+..... .. .+...+.+.++ .+++++||++|.|+.+
T Consensus 120 l~~~~~--~~---~~~~~~~~~~~-----~~~~~~SA~~~~~v~~ 154 (165)
T 2wji_A 120 LAKSLG--IE---IDVDKLEKILG-----VKVVPLSAAKKMGIEE 154 (165)
T ss_dssp HHHHTT--CC---CCHHHHHHHHT-----SCEEECBGGGTBSHHH
T ss_pred hccccC--hh---hHHHHHHHHhC-----CCEEEEEcCCCCCHHH
Confidence 864211 10 11222223333 4789999999999976
No 73
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.69 E-value=1.6e-16 Score=157.87 Aligned_cols=154 Identities=12% Similarity=0.127 Sum_probs=98.8
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeC
Q 004209 337 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 416 (768)
Q Consensus 337 ~~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~ 416 (768)
.+..++|+|+|++|+|||||+++|++.. +.. . ...++.......+..+
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~--~~~-----------------------------~-~~~t~~~~~~~~~~~~ 58 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDE--FVE-----------------------------D-YEPTKADSYRKKVVLD 58 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSC--CCT-----------------------------T-CCTTCCEEEEEEEEET
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCC--CCC-----------------------------C-CCCccceEEEEEEEEC
Confidence 3567899999999999999999999532 000 0 0111111112223334
Q ss_pred C--eEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEeccccccc
Q 004209 417 N--YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 494 (768)
Q Consensus 417 ~--~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~ 494 (768)
+ ..+.||||||+.+|...+...+..+|++|+|+|++... .+..+..+..+........++| ++||+||+|+.+.
T Consensus 59 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~ 134 (206)
T 2bov_A 59 GEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEME---SFAATADFREQILRVKEDENVP-FLLVGNKSDLEDK 134 (206)
T ss_dssp TEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHH---HHHHHHHHHHHHHHHTTCSCCC-EEEEEECTTCGGG
T ss_pred CEEEEEEEEcCCChhhhHHHHHHHHhhCCEEEEEEECCCHH---HHHHHHHHHHHHHHhcCCCCCC-EEEEEeccCcccc
Confidence 4 57899999999999988888899999999999998742 1221111111111111112677 8999999999753
Q ss_pred chhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 495 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 495 s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
..... .++..+++..+ ++++++||++|.|+.+
T Consensus 135 ~~~~~----~~~~~~~~~~~-----~~~~~~Sa~~g~gi~~ 166 (206)
T 2bov_A 135 RQVSV----EEAKNRAEQWN-----VNYVETSAKTRANVDK 166 (206)
T ss_dssp CCSCH----HHHHHHHHHHT-----CEEEEECTTTCTTHHH
T ss_pred ccccH----HHHHHHHHHhC-----CeEEEEeCCCCCCHHH
Confidence 22222 23333444444 4789999999999976
No 74
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.69 E-value=8.5e-17 Score=158.47 Aligned_cols=156 Identities=15% Similarity=0.149 Sum_probs=97.4
Q ss_pred CCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEee
Q 004209 336 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 415 (768)
Q Consensus 336 ~~~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~ 415 (768)
..++.++|+++|.+|+|||||+++|++..- .....+.++.+.....+..
T Consensus 16 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~-------------------------------~~~~~~t~~~~~~~~~~~~ 64 (189)
T 1z06_A 16 SRSRIFKIIVIGDSNVGKTCLTYRFCAGRF-------------------------------PDRTEATIGVDFRERAVDI 64 (189)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSC-------------------------------CSSCCCCCSCCEEEEEEEE
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHcCCC-------------------------------CCCCCCCcceEEEEEEEEE
Confidence 345679999999999999999999985211 0111123333333334444
Q ss_pred CC--eEEEEEeCCCccchH-HHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEeccccc
Q 004209 416 KN--YHVVVLDSPGHKDFV-PNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV 492 (768)
Q Consensus 416 ~~--~~i~lIDTPGh~~f~-~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv 492 (768)
++ ..+.||||||+++|. ..+...+..+|++|+|+|++... .+..+..+..+....+...++| ++||+||+|+.
T Consensus 65 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~---s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~ 140 (189)
T 1z06_A 65 DGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMA---SFHSLPAWIEECKQHLLANDIP-RILVGNKCDLR 140 (189)
T ss_dssp TTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHH---HHHTHHHHHHHHHHHCCCSCCC-EEEEEECTTCG
T ss_pred CCEEEEEEEEECCCchhhhhhhhHHHhcCCCEEEEEEECcCHH---HHHHHHHHHHHHHHhcCCCCCC-EEEEEECcccc
Confidence 44 689999999999987 56667788999999999998742 2221111112221211123566 89999999997
Q ss_pred ccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccC---CCccc
Q 004209 493 QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALEN---QNLVT 535 (768)
Q Consensus 493 ~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG---~gI~e 535 (768)
+...... ++...+.+..+ ++++++||++| .|+.+
T Consensus 141 ~~~~v~~----~~~~~~~~~~~-----~~~~~~Sa~~~~~~~~i~~ 177 (189)
T 1z06_A 141 SAIQVPT----DLAQKFADTHS-----MPLFETSAKNPNDNDHVEA 177 (189)
T ss_dssp GGCCSCH----HHHHHHHHHTT-----CCEEECCSSSGGGGSCHHH
T ss_pred ccceeCH----HHHHHHHHHcC-----CEEEEEeCCcCCcccCHHH
Confidence 5321111 22233333333 47899999999 77754
No 75
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.69 E-value=3.6e-17 Score=160.91 Aligned_cols=149 Identities=19% Similarity=0.194 Sum_probs=94.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCe
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 418 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~ 418 (768)
+.++|+++|++|+|||||+++|++..-. . .. + |+......+..++.
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~---------------------------~---~~--~--t~~~~~~~~~~~~~ 60 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVV---------------------------H---TS--P--TIGSNVEEIVINNT 60 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCE---------------------------E---EE--C--CSCSSCEEEEETTE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC---------------------------c---Cc--C--CCccceEEEEECCE
Confidence 4689999999999999999999942110 0 00 0 11111223345788
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH----cCCCeEEEEEeccccccc
Q 004209 419 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS----FGVDQLIVAVNKMDAVQY 494 (768)
Q Consensus 419 ~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~----lgip~iIVVvNKmDlv~~ 494 (768)
.+.||||||+++|...+...+..+|++|+|+|++.+. .++ ...+.+..+.. .++| +++|+||+|+.+.
T Consensus 61 ~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~~----~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~ 132 (187)
T 1zj6_A 61 RFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRE---RIS----VTREELYKMLAHEDLRKAG-LLIFANKQDVKEC 132 (187)
T ss_dssp EEEEEECCC----CGGGHHHHTTCCEEEEEEETTCTT---THH----HHHHHHHHHHTSGGGTTCE-EEEEEECTTSTTC
T ss_pred EEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHH---HHH----HHHHHHHHHHhchhhCCCe-EEEEEECCCCcCC
Confidence 9999999999988877778888999999999998752 121 22222222222 3566 8999999999752
Q ss_pred chhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 495 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 495 s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
...+++.+.+.. ..+....++++++||++|.|+.+
T Consensus 133 --~~~~~i~~~~~~----~~~~~~~~~~~~~Sa~~g~gi~~ 167 (187)
T 1zj6_A 133 --MTVAEISQFLKL----TSIKDHQWHIQACCALTGEGLCQ 167 (187)
T ss_dssp --CCHHHHHHHHTG----GGCCSSCEEEEECBTTTTBTHHH
T ss_pred --CCHHHHHHHhCh----hhhcCCCcEEEEccCCCCcCHHH
Confidence 222333333221 11222346899999999999976
No 76
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.69 E-value=7.3e-17 Score=159.09 Aligned_cols=153 Identities=20% Similarity=0.194 Sum_probs=101.1
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeC
Q 004209 337 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 416 (768)
Q Consensus 337 ~~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~ 416 (768)
..+.++|+++|..|+|||||+++|++..... . ....|+......+..+
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~------------------------------~--~~~~t~~~~~~~~~~~ 65 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQS------------------------------Q--NILPTIGFSIEKFKSS 65 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHHHTSCGGGCC------------------------------S--SCCCCSSEEEEEEECS
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCC------------------------------C--CcCCccceeEEEEEEC
Confidence 3457999999999999999999998431100 0 0112333444556667
Q ss_pred CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHH-HHHH-----cCCCeEEEEEeccc
Q 004209 417 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQ-LIRS-----FGVDQLIVAVNKMD 490 (768)
Q Consensus 417 ~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~-ll~~-----lgip~iIVVvNKmD 490 (768)
+..+.||||||+++|...+...+..+|++|+|+|++... .+ ....+.+. ++.. .++| +++|+||+|
T Consensus 66 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~----~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D 137 (190)
T 2h57_A 66 SLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRL---RM----VVAKEELDTLLNHPDIKHRRIP-ILFFANKMD 137 (190)
T ss_dssp SCEEEEEEECCSTTTGGGGGGGGGGCSEEEEEEETTCHH---HH----HHHHHHHHHHHHSTTTTTSCCC-EEEEEECTT
T ss_pred CEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCCHH---HH----HHHHHHHHHHHhChhhccCCCe-EEEEEeCcC
Confidence 899999999999999888888889999999999998742 11 12222222 2222 3566 899999999
Q ss_pred ccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 491 AVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 491 lv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
+.+. ...+++.+.+. ...+....++++++||++|.|+.+
T Consensus 138 l~~~--~~~~~~~~~~~----~~~~~~~~~~~~~~Sa~~~~gi~~ 176 (190)
T 2h57_A 138 LRDA--VTSVKVSQLLC----LENIKDKPWHICASDAIKGEGLQE 176 (190)
T ss_dssp STTC--CCHHHHHHHHT----GGGCCSSCEEEEECBTTTTBTHHH
T ss_pred cccC--CCHHHHHHHhC----hhhccCCceEEEEccCCCCcCHHH
Confidence 9752 22233333221 111222346899999999999976
No 77
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.69 E-value=6.4e-17 Score=170.24 Aligned_cols=145 Identities=17% Similarity=0.214 Sum_probs=103.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCe
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 418 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~ 418 (768)
+.++|+++|++|+|||||+++|++... .....+|+|++.....+...+.
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~-------------------------------~~~~~~~~t~~~~~~~~~~~~~ 50 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQ-------------------------------HVGNWPGVTVEKKEGIMEYREK 50 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCE-------------------------------EEEECTTSSCEEEEEEEEETTE
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCc-------------------------------ccCCCCCeEEEeeEEEEEECCc
Confidence 468999999999999999999984311 1123478888888888888999
Q ss_pred EEEEEeCCCccchHH------HH--HHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcC-CCeEEEEEecc
Q 004209 419 HVVVLDSPGHKDFVP------NM--ISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFG-VDQLIVAVNKM 489 (768)
Q Consensus 419 ~i~lIDTPGh~~f~~------~~--i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lg-ip~iIVVvNKm 489 (768)
.+.||||||+.+|.. .. ......+|++|+|+|++.+ ......+..+..++ +| +++|+||+
T Consensus 51 ~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~----------~~~~~~~~~~~~~~~~p-~ilv~NK~ 119 (271)
T 3k53_A 51 EFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCL----------MRNLFLTLELFEMEVKN-IILVLNKF 119 (271)
T ss_dssp EEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGH----------HHHHHHHHHHHHTTCCS-EEEEEECH
T ss_pred eEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcc----------hhhHHHHHHHHhcCCCC-EEEEEECh
Confidence 999999999887643 11 2223579999999999863 23344445556677 77 89999999
Q ss_pred cccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 490 DAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 490 Dlv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
|+........+ ...+.+ .++ ++++|+||++|.|+.+
T Consensus 120 Dl~~~~~~~~~--~~~l~~---~lg-----~~~~~~Sa~~g~gi~~ 155 (271)
T 3k53_A 120 DLLKKKGAKID--IKKMRK---ELG-----VPVIPTNAKKGEGVEE 155 (271)
T ss_dssp HHHHHHTCCCC--HHHHHH---HHS-----SCEEECBGGGTBTHHH
T ss_pred hcCcccccHHH--HHHHHH---HcC-----CcEEEEEeCCCCCHHH
Confidence 98752111111 223333 334 5789999999999976
No 78
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.69 E-value=5.9e-17 Score=158.12 Aligned_cols=149 Identities=15% Similarity=0.137 Sum_probs=77.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC-
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN- 417 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~- 417 (768)
..++|+++|++|+|||||+++|++... ..+..++++.+.....+..++
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~~~-------------------------------~~~~~~t~~~~~~~~~~~~~~~ 55 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSEDAF-------------------------------NSTFISTIGIDFKIRTIELDGK 55 (183)
T ss_dssp EEEEEEEECCCCC-----------------------------------------------CHHHHHCEEEEEEEEEETTE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCC-------------------------------CCCCCCcccceeEEEEEEECCE
Confidence 468999999999999999999984210 011123344454444555555
Q ss_pred -eEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHc---CCCeEEEEEecccccc
Q 004209 418 -YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAVQ 493 (768)
Q Consensus 418 -~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~l---gip~iIVVvNKmDlv~ 493 (768)
..+.||||||+++|...+...+..+|++|+|+|++... .+ ....+.+..+... ++| ++||+||+|+.+
T Consensus 56 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~----~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~ 127 (183)
T 2fu5_C 56 RIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEK---SF----DNIRNWIRNIEEHASADVE-KMILGNKCDVND 127 (183)
T ss_dssp EEEEEEEEC---------CCTTTTTCSEEEEEEETTCHH---HH----HHHHHHHHHHHHHSCTTCE-EEEEEEC--CCS
T ss_pred EEEEEEEcCCCChhhhhhHHHHHhcCCEEEEEEECcCHH---HH----HHHHHHHHHHHHhcCCCCC-EEEEEECccCCc
Confidence 78999999999998877777888999999999998742 11 1222333333332 556 899999999975
Q ss_pred cchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 494 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 494 ~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
...... +++..+.+..+ ++++++||++|.|+.+
T Consensus 128 ~~~v~~----~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~ 160 (183)
T 2fu5_C 128 KRQVSK----ERGEKLALDYG-----IKFMETSAKANINVEN 160 (183)
T ss_dssp CCCSCH----HHHHHHHHHHT-----CEEEECCC---CCHHH
T ss_pred cCcCCH----HHHHHHHHHcC-----CeEEEEeCCCCCCHHH
Confidence 211111 22333444444 4789999999999976
No 79
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.69 E-value=2.5e-16 Score=152.12 Aligned_cols=151 Identities=18% Similarity=0.170 Sum_probs=99.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCe
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 418 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~ 418 (768)
..++|+++|+.|+|||||+++|++..... ......|.+.......+.....
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~~~ 64 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKKFMA-----------------------------DCPHTIGVEFGTRIIEVSGQKI 64 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCS-----------------------------SCTTSCCCCEEEEEEEETTEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCC-----------------------------CCCCccceEEEEEEEEECCeEE
Confidence 46899999999999999999999531100 0011123333333333333346
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH---cCCCeEEEEEecccccccc
Q 004209 419 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQYS 495 (768)
Q Consensus 419 ~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~---lgip~iIVVvNKmDlv~~s 495 (768)
.+.||||||+++|...+...+..+|++|+|+|++.+. .++ .....+..+.. .++| +++|+||+|+.+..
T Consensus 65 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~----~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~ 136 (179)
T 1z0f_A 65 KLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRS---TYN----HLSSWLTDARNLTNPNTV-IILIGNKADLEAQR 136 (179)
T ss_dssp EEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCHH---HHH----THHHHHHHHHHHSCTTCE-EEEEEECTTCGGGC
T ss_pred EEEEEECCCChHhhhhHHHHhccCCEEEEEEeCcCHH---HHH----HHHHHHHHHHHhcCCCCc-EEEEEECccccccc
Confidence 7899999999999888888899999999999998752 111 12222222222 3555 89999999997532
Q ss_pred hhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 496 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 496 ~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
.... +++..+++..+ ++++++||++|.|+.+
T Consensus 137 ~~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~ 167 (179)
T 1z0f_A 137 DVTY----EEAKQFAEENG-----LLFLEASAKTGENVED 167 (179)
T ss_dssp CSCH----HHHHHHHHHTT-----CEEEECCTTTCTTHHH
T ss_pred ccCH----HHHHHHHHHcC-----CEEEEEeCCCCCCHHH
Confidence 2111 23334444444 4789999999999976
No 80
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.69 E-value=5.5e-17 Score=159.00 Aligned_cols=150 Identities=17% Similarity=0.205 Sum_probs=99.8
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC
Q 004209 338 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 417 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~ 417 (768)
.+.++|+++|++|+|||||+++|++.. .. . ...|+......+..++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~--~~------------------------------~--~~~t~~~~~~~~~~~~ 61 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED--VD------------------------------T--ISPTLGFNIKTLEHRG 61 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC--CS------------------------------S--CCCCSSEEEEEEEETT
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC--CC------------------------------c--ccccCccceEEEEECC
Confidence 356899999999999999999998432 00 0 0112222333455578
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHH-HH---cCCCeEEEEEecccccc
Q 004209 418 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLI-RS---FGVDQLIVAVNKMDAVQ 493 (768)
Q Consensus 418 ~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll-~~---lgip~iIVVvNKmDlv~ 493 (768)
..+.||||||+++|...+...+..+|++|+|+|++.+. .++ ...+.+..+ .. .++| +++|+||+|+.+
T Consensus 62 ~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~~----~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~ 133 (186)
T 1ksh_A 62 FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQ---RMQ----DCQRELQSLLVEERLAGAT-LLIFANKQDLPG 133 (186)
T ss_dssp EEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGG---GHH----HHHHHHHHHHTCGGGTTCE-EEEEEECTTSTT
T ss_pred EEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEECcCHH---HHH----HHHHHHHHHHhChhcCCCc-EEEEEeCccCCC
Confidence 99999999999998888888889999999999998752 111 222222222 21 3566 899999999975
Q ss_pred cchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 494 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 494 ~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
. ...+++.+.+.. ..+....++++++||++|.|+.+
T Consensus 134 ~--~~~~~~~~~~~~----~~~~~~~~~~~~~Sa~~~~gi~~ 169 (186)
T 1ksh_A 134 A--LSCNAIQEALEL----DSIRSHHWRIQGCSAVTGEDLLP 169 (186)
T ss_dssp C--CCHHHHHHHTTG----GGCCSSCEEEEECCTTTCTTHHH
T ss_pred C--CCHHHHHHHhCh----hhccCCceEEEEeeCCCCCCHHH
Confidence 2 222333332221 11122346899999999999976
No 81
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.68 E-value=2.2e-16 Score=151.28 Aligned_cols=151 Identities=17% Similarity=0.177 Sum_probs=101.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCe
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 418 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~ 418 (768)
+.++|+++|++|+|||||+++|++..-. .......|.+.......+.....
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~ 55 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDSFD-----------------------------PNINPTIGASFMTKTVQYQNELH 55 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCC-----------------------------TTCCCCCSEEEEEEEEEETTEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCC-----------------------------CCCCCceeEEEEEEEEEECCeEE
Confidence 4589999999999999999999853100 00112244555444444444457
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHc---CCCeEEEEEecccccccc
Q 004209 419 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAVQYS 495 (768)
Q Consensus 419 ~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~l---gip~iIVVvNKmDlv~~s 495 (768)
.+.||||||+++|...+...+..+|++|+|+|++.+.. + ......+..+... .+| +++|+||+|+.+..
T Consensus 56 ~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~----~~~~~~~~~l~~~~~~~~~-iilv~nK~Dl~~~~ 127 (170)
T 1z0j_A 56 KFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEET---F----STLKNWVRELRQHGPPSIV-VAIAGNKCDLTDVR 127 (170)
T ss_dssp EEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCHHH---H----HHHHHHHHHHHHHSCTTSE-EEEEEECTTCGGGC
T ss_pred EEEEEcCCCchhhhcccHhhCcCCCEEEEEEECcCHHH---H----HHHHHHHHHHHHhCCCCCc-EEEEEECCcccccc
Confidence 89999999999998888888899999999999987521 1 1223333444433 344 88899999997532
Q ss_pred hhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 496 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 496 ~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
+.. .++...+.+..+ ++++++||++|.|+.+
T Consensus 128 ~v~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~ 158 (170)
T 1z0j_A 128 EVM----ERDAKDYADSIH-----AIFVETSAKNAININE 158 (170)
T ss_dssp CSC----HHHHHHHHHHTT-----CEEEECBTTTTBSHHH
T ss_pred ccC----HHHHHHHHHHcC-----CEEEEEeCCCCcCHHH
Confidence 111 122233333333 5789999999999976
No 82
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.68 E-value=1.8e-16 Score=153.39 Aligned_cols=153 Identities=16% Similarity=0.134 Sum_probs=96.6
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC
Q 004209 338 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 417 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~ 417 (768)
...++|+++|+.|+|||||+++|++.. .. ....+.+.... ...+..++
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~~--~~-----------------------------~~~~~t~~~~~-~~~~~~~~ 54 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQSY--FV-----------------------------SDYDPTIEDSY-TKICSVDG 54 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHSS--CC-----------------------------SSCCTTCCEEE-EEEEEETT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCc--Cc-----------------------------cccCCCcCceE-EEEEEECC
Confidence 456899999999999999999999531 00 00011111111 12333444
Q ss_pred --eEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccc
Q 004209 418 --YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 495 (768)
Q Consensus 418 --~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s 495 (768)
..+.||||||+.+|...+...+..+|++|+|+|++... .+..+..+..+.+......++| +++|+||+|+.+..
T Consensus 55 ~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~ 130 (181)
T 2fn4_A 55 IPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQ---SFNEVGKLFTQILRVKDRDDFP-VVLVGNKADLESQR 130 (181)
T ss_dssp EEEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHH---HHHHHHHHHHHHHHHHTSSCCC-EEEEEECGGGGGGC
T ss_pred EEEEEEEEECCCchhhHHHHHHHHhhCCEEEEEEeCCCHH---HHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccccc
Confidence 57889999999998777777788899999999998742 1221111122222222234677 89999999997532
Q ss_pred hhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 496 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 496 ~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
.-.. .+...+....+ ++++++||++|.|+.+
T Consensus 131 ~v~~----~~~~~~~~~~~-----~~~~~~Sa~~~~gv~~ 161 (181)
T 2fn4_A 131 QVPR----SEASAFGASHH-----VAYFEASAKLRLNVDE 161 (181)
T ss_dssp CSCH----HHHHHHHHHTT-----CEEEECBTTTTBSHHH
T ss_pred ccCH----HHHHHHHHHcC-----CeEEEecCCCCCCHHH
Confidence 1111 12222333333 5789999999999976
No 83
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.68 E-value=1.8e-16 Score=151.65 Aligned_cols=149 Identities=14% Similarity=0.175 Sum_probs=97.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeC--
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK-- 416 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~-- 416 (768)
..++|+++|++|+|||||+++|++..- .....+.++.+.....+..+
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~-------------------------------~~~~~~t~~~~~~~~~~~~~~~ 52 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIF-------------------------------TKDYKKTIGVDFLERQIQVNDE 52 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCC-------------------------------CCCSSCCCSSSEEEEEEEETTE
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCC-------------------------------CCCCCCceEEEEEEEEEEECCE
Confidence 458999999999999999999995210 00111222223333333333
Q ss_pred CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH--cCCCeEEEEEeccccccc
Q 004209 417 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQY 494 (768)
Q Consensus 417 ~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~--lgip~iIVVvNKmDlv~~ 494 (768)
...+.||||||+.+|...+...+..+|++|+|+|++... .++ .....+..+.. .++| +++|+||+|+.+.
T Consensus 53 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~----~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~ 124 (168)
T 1z2a_A 53 DVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRE---SFE----AISSWREKVVAEVGDIP-TALVQNKIDLLDD 124 (168)
T ss_dssp EEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHH---HHH----THHHHHHHHHHHHCSCC-EEEEEECGGGGGG
T ss_pred EEEEEEEcCCCcHhHHHHHHHHhcCCCEEEEEEECcCHH---HHH----HHHHHHHHHHHhCCCCC-EEEEEECcccCcc
Confidence 457999999999998777777888999999999998742 111 11222222222 3667 8999999999753
Q ss_pred chhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 495 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 495 s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
..... +++..+.+..+ ++++++||++|.|+.+
T Consensus 125 ~~~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~ 156 (168)
T 1z2a_A 125 SCIKN----EEAEGLAKRLK-----LRFYRTSVKEDLNVSE 156 (168)
T ss_dssp CSSCH----HHHHHHHHHHT-----CEEEECBTTTTBSSHH
T ss_pred cccCH----HHHHHHHHHcC-----CeEEEEecCCCCCHHH
Confidence 22111 22333444444 4789999999999976
No 84
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.68 E-value=1.9e-16 Score=151.93 Aligned_cols=149 Identities=16% Similarity=0.164 Sum_probs=92.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeC--
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK-- 416 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~-- 416 (768)
..++|+++|++|+|||||+++|++..- .....+.++.+.....+..+
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~-------------------------------~~~~~~t~~~~~~~~~~~~~~~ 53 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENKF-------------------------------NDKHITTLGASFLTKKLNIGGK 53 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCC-------------------------------CSSCCCCCSCEEEEEEEESSSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCC-------------------------------CcCCCCccceEEEEEEEEECCE
Confidence 458999999999999999999995310 01111223333333334333
Q ss_pred CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH---cCCCeEEEEEecccccc
Q 004209 417 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQ 493 (768)
Q Consensus 417 ~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~---lgip~iIVVvNKmDlv~ 493 (768)
...+.||||||+++|...+...+..+|++|+|+|++.+. .+. .....+..+.. .++| +++|+||+|+.+
T Consensus 54 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~----~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~ 125 (170)
T 1z08_A 54 RVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDED---SFQ----KVKNWVKELRKMLGNEIC-LCIVGNKIDLEK 125 (170)
T ss_dssp EEEEEEEECCCC-------CCSSTTCSEEEEEEETTCHH---HHH----HHHHHHHHHHHHHGGGSE-EEEEEECGGGGG
T ss_pred EEEEEEEECCCcHhhhhhHHHHhccCCEEEEEEECcCHH---HHH----HHHHHHHHHHHhcCCCCe-EEEEEECccccc
Confidence 357889999999999888877888999999999998742 111 12222222222 3566 899999999975
Q ss_pred cchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 494 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 494 ~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
...... ++...+.+..+ ++++++||++|.|+.+
T Consensus 126 ~~~~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~ 158 (170)
T 1z08_A 126 ERHVSI----QEAESYAESVG-----AKHYHTSAKQNKGIEE 158 (170)
T ss_dssp GCCSCH----HHHHHHHHHTT-----CEEEEEBTTTTBSHHH
T ss_pred ccccCH----HHHHHHHHHcC-----CeEEEecCCCCCCHHH
Confidence 322111 22333444443 4789999999999976
No 85
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.68 E-value=1.4e-16 Score=156.56 Aligned_cols=149 Identities=21% Similarity=0.243 Sum_probs=98.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCe
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 418 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~ 418 (768)
..++|+++|++|+|||||+++|++.. + .......|. ....+..++.
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~~--~----------------------------~~~~~t~g~----~~~~~~~~~~ 60 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASED--I----------------------------SHITPTQGF----NIKSVQSQGF 60 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCSC--C----------------------------EEEEEETTE----EEEEEEETTE
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCC--C----------------------------CcccCcCCe----EEEEEEECCE
Confidence 46899999999999999999998420 0 000111232 2234455688
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHH-HHH---HcCCCeEEEEEeccccccc
Q 004209 419 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQ-LIR---SFGVDQLIVAVNKMDAVQY 494 (768)
Q Consensus 419 ~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~-ll~---~lgip~iIVVvNKmDlv~~ 494 (768)
.+.||||||+++|...+...+..+|++|+|+|++... .|. ...+.+. ++. ..++| +++|+||+|+.+.
T Consensus 61 ~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~----~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~ 132 (181)
T 1fzq_A 61 KLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRK---RFE----ETGQELTELLEEEKLSCVP-VLIFANKQDLLTA 132 (181)
T ss_dssp EEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGG---GHH----HHHHHHHHHTTCGGGTTCC-EEEEEECTTSTTC
T ss_pred EEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECcCHH---HHH----HHHHHHHHHHhChhhcCCC-EEEEEECcCcccC
Confidence 9999999999999988888899999999999998742 111 1222222 222 23566 8999999999753
Q ss_pred chhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 495 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 495 s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
...+++.+.+.. .......++++++||++|+|+.+
T Consensus 133 --~~~~~~~~~~~~----~~~~~~~~~~~~~Sa~~g~gi~~ 167 (181)
T 1fzq_A 133 --APASEIAEGLNL----HTIRDRVWQIQSCSALTGEGVQD 167 (181)
T ss_dssp --CCHHHHHHHTTG----GGCCSSCEEEEECCTTTCTTHHH
T ss_pred --CCHHHHHHHhCc----hhccCCceEEEEccCCCCCCHHH
Confidence 122233332221 11122346789999999999976
No 86
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.68 E-value=3e-17 Score=160.80 Aligned_cols=152 Identities=19% Similarity=0.177 Sum_probs=97.9
Q ss_pred CCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEee
Q 004209 336 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 415 (768)
Q Consensus 336 ~~~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~ 415 (768)
...+.++|+++|..|+|||||+++|++..-. ......|.+ ...+..
T Consensus 17 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~------------------------------~~~~t~~~~----~~~~~~ 62 (181)
T 2h17_A 17 RGSQEHKVIIVGLDNAGKTTILYQFSMNEVV------------------------------HTSPTIGSN----VEEIVI 62 (181)
T ss_dssp ----CEEEEEEEETTSSHHHHHHHHHTTSCE------------------------------EEECCSSSS----CEEEEE
T ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcCCCC------------------------------ccCCcCcee----eEEEEE
Confidence 3456799999999999999999999942110 000111221 123444
Q ss_pred CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHH-H---HcCCCeEEEEEecccc
Q 004209 416 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLI-R---SFGVDQLIVAVNKMDA 491 (768)
Q Consensus 416 ~~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll-~---~lgip~iIVVvNKmDl 491 (768)
++..+.||||||+++|...+...+..+|++|+|+|++... .+. ...+.+..+ . ..++| +++|+||+|+
T Consensus 63 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~---s~~----~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl 134 (181)
T 2h17_A 63 NNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRE---RIS----VTREELYKMLAHEDLRKAG-LLIFANKQDV 134 (181)
T ss_dssp TTEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEETTCTT---THH----HHHHHHHHHHTCGGGTTCE-EEEEEECTTS
T ss_pred CCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHH---HHH----HHHHHHHHHHhChhhCCCe-EEEEEECCCc
Confidence 7789999999999998887788889999999999998752 111 222222222 2 24565 8999999999
Q ss_pred cccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 492 VQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 492 v~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
.+. ...+++.+.+. ...+....++++++||++|.|+.+
T Consensus 135 ~~~--~~~~~i~~~~~----~~~~~~~~~~~~~~Sa~~g~gi~~ 172 (181)
T 2h17_A 135 KEC--MTVAEISQFLK----LTSIKDHQWHIQACCALTGEGLCQ 172 (181)
T ss_dssp TTC--CCHHHHHHHTT----GGGCCSSCEEEEECBTTTTBTHHH
T ss_pred ccC--CCHHHHHHHhC----cccccCCceEEEEccCCCCcCHHH
Confidence 752 12222333222 111222345889999999999976
No 87
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.68 E-value=9.3e-17 Score=168.40 Aligned_cols=145 Identities=19% Similarity=0.211 Sum_probs=103.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCe
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 418 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~ 418 (768)
..++|+++|++|+|||||+++|++..- .....+|+|++.....+...+.
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~-------------------------------~~~~~pg~tv~~~~~~~~~~~~ 52 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGTKQ-------------------------------YVANWPGVTVEKKEGVFTYKGY 52 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTTCE-------------------------------EEEECTTSCCEEEEEEEEETTE
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCC-------------------------------cccCCCCceEEEEEEEEEECCe
Confidence 458999999999999999999984211 1122368899888888888889
Q ss_pred EEEEEeCCCccchHH-----HH-HHhc--ccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEeccc
Q 004209 419 HVVVLDSPGHKDFVP-----NM-ISGA--TQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 490 (768)
Q Consensus 419 ~i~lIDTPGh~~f~~-----~~-i~g~--~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmD 490 (768)
.+.||||||+..|.. .+ ...+ ..+|++|+|+|++... .....+..+..+++| +|+|+||+|
T Consensus 53 ~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~~----------~~~~~~~~l~~~~~p-vilv~NK~D 121 (258)
T 3a1s_A 53 TINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNPE----------QSLYLLLEILEMEKK-VILAMTAID 121 (258)
T ss_dssp EEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSCH----------HHHHHHHHHHTTTCC-EEEEEECHH
T ss_pred EEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCchh----------hHHHHHHHHHhcCCC-EEEEEECcC
Confidence 999999999876532 11 1222 5799999999998741 223344455667888 899999999
Q ss_pred ccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 491 AVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 491 lv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
+..... . ..+...+.+.++ ++++++||++|.|+.+
T Consensus 122 l~~~~~--i---~~~~~~l~~~lg-----~~vi~~SA~~g~gi~e 156 (258)
T 3a1s_A 122 EAKKTG--M---KIDRYELQKHLG-----IPVVFTSSVTGEGLEE 156 (258)
T ss_dssp HHHHTT--C---CBCHHHHHHHHC-----SCEEECCTTTCTTHHH
T ss_pred CCCccc--h---HHHHHHHHHHcC-----CCEEEEEeeCCcCHHH
Confidence 874211 1 112233333344 4789999999999976
No 88
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.68 E-value=2e-16 Score=152.53 Aligned_cols=150 Identities=16% Similarity=0.134 Sum_probs=89.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCe
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 418 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~ 418 (768)
..++|+++|++|+|||||+++|++.... ......|.+.......+.....
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~ 52 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQER------------------------------DLHEQLGEDVYERTLTVDGEDT 52 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----------------------------------CCCSSSSEEEEEEEETTEEE
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCc------------------------------cccCccccceeEEEEEECCEEE
Confidence 4689999999999999999999842110 0011234444333333333345
Q ss_pred EEEEEeCCCccch--HHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHc----CCCeEEEEEeccccc
Q 004209 419 HVVVLDSPGHKDF--VPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF----GVDQLIVAVNKMDAV 492 (768)
Q Consensus 419 ~i~lIDTPGh~~f--~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~l----gip~iIVVvNKmDlv 492 (768)
.+.||||||+..+ .......+..+|++|+|+|++... +|+ ...+.+..+... ++| +++|+||+|+.
T Consensus 53 ~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~----~~~~~~~~l~~~~~~~~~p-iilv~NK~Dl~ 124 (175)
T 2nzj_A 53 TLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRG---SFE----SASELRIQLRRTHQADHVP-IILVGNKADLA 124 (175)
T ss_dssp EEEEECCC-------CHHHHHTTTSCSEEEEEEETTCHH---HHH----HHHHHHHHHHHCC----CC-EEEEEECTTCT
T ss_pred EEEEEecCCCCccchhhhHHhhcccCCEEEEEEECCCHH---HHH----HHHHHHHHHHHhhccCCCC-EEEEEEChhhc
Confidence 7899999999884 333345567899999999998642 121 222233333332 677 89999999997
Q ss_pred ccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 493 QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 493 ~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
+...-..+ +...+....+ ++++++||++|.|+.+
T Consensus 125 ~~~~v~~~----~~~~~~~~~~-----~~~~~~Sa~~g~gi~~ 158 (175)
T 2nzj_A 125 RCREVSVE----EGRACAVVFD-----CKFIETSATLQHNVAE 158 (175)
T ss_dssp TTCCSCHH----HHHHHHHHHT-----SEEEECBTTTTBSHHH
T ss_pred cccccCHH----HHHHHHHHcC-----CeEEEEecCCCCCHHH
Confidence 53111111 2223333333 4789999999999976
No 89
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.68 E-value=1.1e-16 Score=156.23 Aligned_cols=151 Identities=17% Similarity=0.133 Sum_probs=93.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC-
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN- 417 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~- 417 (768)
+.++|+++|++|+|||||+++|++.... ....+++.+.....+..++
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~--------------------------------~~~~~t~~~~~~~~~~~~~~ 50 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFV--------------------------------DEYDPTIEDSYRKQVVIDGE 50 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCC--------------------------------CCCCTTCCEEEEEEEEETTE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCC--------------------------------CCCCCCchheEEEEEEECCc
Confidence 4589999999999999999999953110 0001122222223333344
Q ss_pred -eEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccch
Q 004209 418 -YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 496 (768)
Q Consensus 418 -~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~ 496 (768)
..+.||||||+++|...+...+..+|++|+|+|++... .+..+..+..+........++| +++|+||+|+...
T Consensus 51 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~p-~i~v~nK~Dl~~~-- 124 (189)
T 4dsu_A 51 TCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTK---SFEDIHHYREQIKRVKDSEDVP-MVLVGNKCDLPSR-- 124 (189)
T ss_dssp EEEEEEEECCCC---CTTHHHHHHHCSEEEEEEETTCHH---HHHHHHHHHHHHHHHTTCSCCC-EEEEEECTTSSSC--
T ss_pred EEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHH---HHHHHHHHHHHHHHhcCCCCCc-EEEEEECccCccc--
Confidence 45778999999998888888888999999999998742 1211111111121212223667 8999999999742
Q ss_pred hhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 497 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 497 e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
.... +.+..+.+..+ ++++++||++|.|+.+
T Consensus 125 ~~~~---~~~~~~~~~~~-----~~~~~~Sa~~g~gi~~ 155 (189)
T 4dsu_A 125 TVDT---KQAQDLARSYG-----IPFIETSAKTRQGVDD 155 (189)
T ss_dssp SSCH---HHHHHHHHHHT-----CCEEECCTTTCTTHHH
T ss_pred ccCH---HHHHHHHHHcC-----CeEEEEeCCCCCCHHH
Confidence 1111 22233333334 4789999999999976
No 90
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.68 E-value=2.8e-16 Score=153.32 Aligned_cols=154 Identities=17% Similarity=0.182 Sum_probs=99.5
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeC
Q 004209 337 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 416 (768)
Q Consensus 337 ~~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~ 416 (768)
..+.++|+++|++|+|||||+++|++..-. ....+.++... ...+..+
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~-------------------------------~~~~~t~~~~~-~~~~~~~ 62 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFV-------------------------------DDYDPTIEDSY-LKHTEID 62 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCC-------------------------------SCCCTTCCEEE-EEEEEET
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCC-------------------------------CCCCCCcccee-EEEEEeC
Confidence 456799999999999999999999942100 00111122222 2333334
Q ss_pred C--eEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEeccccccc
Q 004209 417 N--YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 494 (768)
Q Consensus 417 ~--~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~ 494 (768)
+ ..+.||||||+++|...+...+..+|++|+|+|++.+. .+..+..+..+.+......++| +|+|+||+|+.+.
T Consensus 63 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~ 138 (183)
T 3kkq_A 63 NQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKA---SFEHVDRFHQLILRVKDRESFP-MILVANKVDLMHL 138 (183)
T ss_dssp TEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHH---HHHTHHHHHHHHHHHHTSSCCC-EEEEEECTTCSTT
T ss_pred CcEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHH---HHHHHHHHHHHHHHhcCCCCCc-EEEEEECCCchhc
Confidence 4 45667999999998877788888999999999998752 2322222223333333335677 8999999998752
Q ss_pred chhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecc-cCCCccc
Q 004209 495 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSAL-ENQNLVT 535 (768)
Q Consensus 495 s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~-tG~gI~e 535 (768)
..... ++...+.+.++ ++++++||+ +|.|+.+
T Consensus 139 ~~v~~----~~~~~~~~~~~-----~~~~~~Sa~~~~~~v~~ 171 (183)
T 3kkq_A 139 RKVTR----DQGKEMATKYN-----IPYIETSAKDPPLNVDK 171 (183)
T ss_dssp CCSCH----HHHHHHHHHHT-----CCEEEEBCSSSCBSHHH
T ss_pred cCcCH----HHHHHHHHHhC-----CeEEEeccCCCCCCHHH
Confidence 22111 22333444444 468999999 9999976
No 91
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.68 E-value=2e-16 Score=155.83 Aligned_cols=151 Identities=18% Similarity=0.186 Sum_probs=101.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCe
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 418 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~ 418 (768)
..++|+++|.+|+|||||+++|++..-.. ......|++.......+.....
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~~~ 71 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYADDSFTP-----------------------------AFVSTVGIDFKVKTVYRHDKRI 71 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCC-----------------------------SCCCCCCCEEEEEEEEETTEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCC-----------------------------CcCCceeEEEEEEEEEECCeEE
Confidence 46899999999999999999998531100 0011234444444334434456
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHc---CCCeEEEEEecccccccc
Q 004209 419 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAVQYS 495 (768)
Q Consensus 419 ~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~l---gip~iIVVvNKmDlv~~s 495 (768)
.+.||||||+.+|...+...+..+|++|+|+|++... .+ ....+.+..+... ++| ++||+||+|+.+..
T Consensus 72 ~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~----~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~ 143 (189)
T 2gf9_A 72 KLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQE---SF----AAVQDWATQIKTYSWDNAQ-VILVGNKCDLEDER 143 (189)
T ss_dssp EEEEEECCSCCSSCCSGGGGGTTCSEEEEEEETTCHH---HH----HTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGGC
T ss_pred EEEEEeCCCcHHHhhhHHHhccCCCEEEEEEECCCHH---HH----HHHHHHHHHHHHhcCCCCC-EEEEEECccccccc
Confidence 8999999999998877888889999999999998742 11 1223333344443 555 89999999997532
Q ss_pred hhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 496 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 496 ~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
... .+++..+.+.++ ++++++||++|.|+.+
T Consensus 144 ~~~----~~~~~~~~~~~~-----~~~~~~Sa~~g~gi~~ 174 (189)
T 2gf9_A 144 VVP----AEDGRRLADDLG-----FEFFEASAKENINVKQ 174 (189)
T ss_dssp CSC----HHHHHHHHHHHT-----CEEEECBTTTTBSHHH
T ss_pred CCC----HHHHHHHHHHcC-----CeEEEEECCCCCCHHH
Confidence 111 123334444444 4789999999999976
No 92
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.68 E-value=6.3e-16 Score=148.08 Aligned_cols=149 Identities=18% Similarity=0.144 Sum_probs=95.2
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCeE
Q 004209 340 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 419 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~~ 419 (768)
.++|+++|++|+|||||+++|++..-. . ......+.+.. ....+......
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~--~---------------------------~~~~t~~~~~~-~~~~~~~~~~~ 52 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFR--E---------------------------SYIPTVEDTYR-QVISCDKSICT 52 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCC--S---------------------------SCCCCSCEEEE-EEEEETTEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCC--C---------------------------CCCCCccccEE-EEEEECCEEEE
Confidence 479999999999999999999942100 0 00000111111 11122223457
Q ss_pred EEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH-----cCCCeEEEEEeccccccc
Q 004209 420 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-----FGVDQLIVAVNKMDAVQY 494 (768)
Q Consensus 420 i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~-----lgip~iIVVvNKmDlv~~ 494 (768)
+.||||||+.+|...+...+..+|++|+|+|++... .+ ......+..+.. .++| +++|+||+|+.+.
T Consensus 53 ~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~----~~~~~~~~~i~~~~~~~~~~p-ii~v~nK~Dl~~~ 124 (172)
T 2erx_A 53 LQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQ---SL----EELKPIYEQICEIKGDVESIP-IMLVGNKCDESPS 124 (172)
T ss_dssp EEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCHH---HH----HTTHHHHHHHHHHHC---CCC-EEEEEECGGGGGG
T ss_pred EEEEECCCchhhHHHHHHhcccCCEEEEEEECcCHH---HH----HHHHHHHHHHHHHhCCCCCCC-EEEEEEccccccc
Confidence 899999999999988888889999999999998742 11 122333333332 2567 8999999999753
Q ss_pred chhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 495 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 495 s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
..... .+...+.+..+ ++++++||++|.|+.+
T Consensus 125 ~~v~~----~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~ 156 (172)
T 2erx_A 125 REVQS----SEAEALARTWK-----CAFMETSAKLNHNVKE 156 (172)
T ss_dssp CCSCH----HHHHHHHHHHT-----CEEEECBTTTTBSHHH
T ss_pred cccCH----HHHHHHHHHhC-----CeEEEecCCCCcCHHH
Confidence 21111 12223333333 4789999999999976
No 93
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.68 E-value=1.1e-16 Score=153.23 Aligned_cols=148 Identities=18% Similarity=0.101 Sum_probs=81.4
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCeE
Q 004209 340 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 419 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~~ 419 (768)
.++|+++|.+|+|||||+++|++.... ......|.|... ...+......
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~------------------------------~~~~~~~~~~~~-~~~~~~~~~~ 50 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDG------------------------------PEAEAAGHTYDR-SIVVDGEEAS 50 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------------------------------------CEEEE-EEEETTEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCcccc------------------------------CCCCccccceEE-EEEECCEEEE
Confidence 479999999999999999999732110 001123344431 2233334567
Q ss_pred EEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH----cCCCeEEEEEecccccccc
Q 004209 420 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS----FGVDQLIVAVNKMDAVQYS 495 (768)
Q Consensus 420 i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~----lgip~iIVVvNKmDlv~~s 495 (768)
+.+|||||+.+|.......+..+|++|+|+|++... .++ .....+..+.. .++| +++|+||+|+.+..
T Consensus 51 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~----~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~ 122 (166)
T 3q72_A 51 LMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKG---SFE----KASELRVQLRRARQTDDVP-IILVGNKSDLVRSR 122 (166)
T ss_dssp EEEEECC---------------CCEEEEEEETTCHH---HHH----HHHHHHHHHHHCC---CCC-EEEEEECTTCCSSC
T ss_pred EEEEECCCCccchhhhhhhhhhCCEEEEEEECCCHH---HHH----HHHHHHHHHHHhcCCCCCC-EEEEEecccccccc
Confidence 889999999999888888889999999999998742 222 12222222222 3667 89999999997532
Q ss_pred hhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 496 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 496 ~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
....+ +...+....+ ++++++||++|.|+.+
T Consensus 123 ~~~~~----~~~~~~~~~~-----~~~~~~Sa~~~~gi~~ 153 (166)
T 3q72_A 123 EVSVD----EGRACAVVFD-----CKFIETSAALHHNVQA 153 (166)
T ss_dssp CSCHH----HHHHHHHHTT-----CEEEECBGGGTBSHHH
T ss_pred ccCHH----HHHHHHHHhC-----CcEEEeccCCCCCHHH
Confidence 21111 1222333333 5789999999999976
No 94
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.68 E-value=7.5e-17 Score=159.95 Aligned_cols=150 Identities=15% Similarity=0.048 Sum_probs=97.9
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC
Q 004209 338 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 417 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~ 417 (768)
.+..+|+++|++|+|||||+++|++..-. ....|+......+..++
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~----------------------------------~~~~t~~~~~~~~~~~~ 66 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA----------------------------------TLQPTWHPTSEELAIGN 66 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCC----------------------------------CCCCCCSCEEEEEEETT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC----------------------------------ccccCCCCCeEEEEECC
Confidence 34579999999999999999999952100 01112222334556678
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHH----HcCCCeEEEEEecccccc
Q 004209 418 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR----SFGVDQLIVAVNKMDAVQ 493 (768)
Q Consensus 418 ~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~----~lgip~iIVVvNKmDlv~ 493 (768)
..+.+|||||+++|...+...+..+|++|+|+|++.+. .|. .....+..+. ..++| +++|+||+|+..
T Consensus 67 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~----~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~ 138 (190)
T 1m2o_B 67 IKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPE---RFD----EARVELDALFNIAELKDVP-FVILGNKIDAPN 138 (190)
T ss_dssp EEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEETTCGG---GHH----HHHHHHHHHHTCGGGTTCC-EEEEEECTTSTT
T ss_pred EEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCChH---HHH----HHHHHHHHHHcchhhcCCC-EEEEEECCCCcC
Confidence 99999999999998877777888999999999999752 121 1222222221 24666 899999999975
Q ss_pred cchhhHHHHHHHHhHHHhhcC-------CCCCCCcEEEeecccCCCccc
Q 004209 494 YSKDRFDSIKVQLGTFLRSCG-------FKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 494 ~s~e~~~~i~~el~~~lk~~g-------~~~~~i~~IpVSA~tG~gI~e 535 (768)
. ...+++ .+.+.... .....++++++||++|.|+.+
T Consensus 139 ~--~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~ 181 (190)
T 1m2o_B 139 A--VSEAEL----RSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLE 181 (190)
T ss_dssp C--CCHHHH----HHHTTCSSCCC---CCSSCCEEEEECBTTTTBSHHH
T ss_pred C--CCHHHH----HHHhCCccccccccccccceEEEEEeECCcCCCHHH
Confidence 1 122222 22222111 011346899999999999976
No 95
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.67 E-value=3.2e-16 Score=157.42 Aligned_cols=151 Identities=23% Similarity=0.306 Sum_probs=93.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeC--
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK-- 416 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~-- 416 (768)
..++|+++|++|+|||||+++|++.. .. +....++.+... +..+
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~--~~------------------------------~~~~~~~~~~~~--~~~~~~ 51 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQ--YR------------------------------DTQTSITDSSAI--YKVNNN 51 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSC--CC------------------------------CBCCCCSCEEEE--EECSST
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC--cc------------------------------cccCCcceeeEE--EEecCC
Confidence 46899999999999999999999531 00 001122222222 4444
Q ss_pred -CeEEEEEeCCCccchHH-HHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHH----HH-----HcCCCeEEEE
Q 004209 417 -NYHVVVLDSPGHKDFVP-NMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQL----IR-----SFGVDQLIVA 485 (768)
Q Consensus 417 -~~~i~lIDTPGh~~f~~-~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~l----l~-----~lgip~iIVV 485 (768)
+..+.||||||+.+|.. .+...+..+|++|+|+|++.. + .+..+.... +. ..++| +++|
T Consensus 52 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~~~--~-------~~~~~~~~~~~~~~~~~~~~~~~~p-iilv 121 (214)
T 2fh5_B 52 RGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAF--Q-------REVKDVAEFLYQVLIDSMALKNSPS-LLIA 121 (214)
T ss_dssp TCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTTH--H-------HHHHHHHHHHHHHHHHHHTSTTCCE-EEEE
T ss_pred CccEEEEEECCCChhHHHHHHHHHHhhCCEEEEEEECCCc--C-------HHHHHHHHHHHHHHhhhhhcccCCC-EEEE
Confidence 67899999999999987 455568899999999999862 1 112222211 11 12455 8999
Q ss_pred EecccccccchhhHHHHHHHHhHHHhh---------------------cC-----CC----CCCCcEEEeecccC-----
Q 004209 486 VNKMDAVQYSKDRFDSIKVQLGTFLRS---------------------CG-----FK----DASLTWIPLSALEN----- 530 (768)
Q Consensus 486 vNKmDlv~~s~e~~~~i~~el~~~lk~---------------------~g-----~~----~~~i~~IpVSA~tG----- 530 (768)
+||+|+... ...+.+.+.+...+.. .+ |. +..++|+++||++|
T Consensus 122 ~nK~Dl~~~--~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~ 199 (214)
T 2fh5_B 122 CNKQDIAMA--KSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTG 199 (214)
T ss_dssp EECTTSTTC--CCHHHHHHHHHHHHHHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------
T ss_pred EECCCCCCc--ccHHHHHHHHHHHHHHHhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCcccc
Confidence 999999753 2233344444443331 00 00 01578999999999
Q ss_pred -CCccc
Q 004209 531 -QNLVT 535 (768)
Q Consensus 531 -~gI~e 535 (768)
.||.+
T Consensus 200 ~~gv~~ 205 (214)
T 2fh5_B 200 SADIQD 205 (214)
T ss_dssp CCBCHH
T ss_pred ccChHH
Confidence 89865
No 96
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.67 E-value=5.1e-16 Score=154.41 Aligned_cols=151 Identities=17% Similarity=0.168 Sum_probs=100.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCe
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 418 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~ 418 (768)
..++|+++|++|+|||||+++|++..-. .......|++.......+.....
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-----------------------------~~~~~t~~~~~~~~~~~~~~~~~ 57 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSFT-----------------------------PAFVSTVGIDFKVKTIYRNDKRI 57 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCC-----------------------------SCCCCCCSEEEEEEEEEETTEEE
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCC-----------------------------CCcCCccceeEEEEEEEECCeEE
Confidence 3589999999999999999999842100 00011123444433333333456
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH---cCCCeEEEEEecccccccc
Q 004209 419 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQYS 495 (768)
Q Consensus 419 ~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~---lgip~iIVVvNKmDlv~~s 495 (768)
.+.||||||+++|...+...+..+|++|+|+|++.+. .+. .....+..+.. .++| +++|+||+|+.+..
T Consensus 58 ~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~~----~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~ 129 (203)
T 1zbd_A 58 KLQIWDTAGLERYRTITTAYYRGAMGFILMYDITNEE---SFN----AVQDWSTQIKTYSWDNAQ-VLLVGNKCDMEDER 129 (203)
T ss_dssp EEEEEEECCSGGGHHHHHTTGGGCSEEEEEEETTCHH---HHH----HHHHHHHHHHHHSCSSCE-EEEEEECTTCTTSC
T ss_pred EEEEEECCCchhhcchHHHhhcCCCEEEEEEECcCHH---HHH----HHHHHHHHHHHhcCCCCC-EEEEEECcccCccc
Confidence 8999999999999998899999999999999998742 111 22223333333 2555 89999999997532
Q ss_pred hhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 496 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 496 ~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
.... .++..+.+.++ ++++++||++|.|+.+
T Consensus 130 ~~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~ 160 (203)
T 1zbd_A 130 VVSS----ERGRQLADHLG-----FEFFEASAKDNINVKQ 160 (203)
T ss_dssp CSCH----HHHHHHHHHHT-----CEEEECBTTTTBSSHH
T ss_pred ccCH----HHHHHHHHHCC-----CeEEEEECCCCCCHHH
Confidence 1111 22333344444 4789999999999976
No 97
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.67 E-value=1.4e-16 Score=152.60 Aligned_cols=147 Identities=17% Similarity=0.162 Sum_probs=96.1
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC--
Q 004209 340 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN-- 417 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~-- 417 (768)
.++|+++|++|+|||||+++|++..- .....++++.+.....+..++
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 51 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKF-------------------------------NPSFITTIGIDFKIKTVDINGKK 51 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCC-------------------------------CC-------CCEEEEEEESSSCE
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCC-------------------------------CCCCCCccceeEEEEEEEECCEE
Confidence 47999999999999999999995311 011123334444444444443
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHc---CCCeEEEEEeccccccc
Q 004209 418 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAVQY 494 (768)
Q Consensus 418 ~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~l---gip~iIVVvNKmDlv~~ 494 (768)
..+.||||||+++|...+...+..+|++|+|+|++.+. .+. .....+..+... ++| +++|+||+|+...
T Consensus 52 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~----~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~ 123 (170)
T 1g16_A 52 VKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDER---TFT----NIKQWFKTVNEHANDEAQ-LLLVGNKSDMETR 123 (170)
T ss_dssp EEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCHH---HHH----THHHHHHHHHHHSCTTCE-EEEEEECTTCTTC
T ss_pred EEEEEEeCCCChhhhhhHHHHhccCCEEEEEEECCCHH---HHH----HHHHHHHHHHHhcCCCCc-EEEEEECccCCcC
Confidence 57899999999998877778888999999999998742 111 222333333332 565 8999999999431
Q ss_pred chhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 495 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 495 s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
.... ++...+.+..+ ++++++||++|.|+.+
T Consensus 124 -~~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~gv~~ 154 (170)
T 1g16_A 124 -VVTA----DQGEALAKELG-----IPFIESSAKNDDNVNE 154 (170)
T ss_dssp -CSCH----HHHHHHHHHHT-----CCEEECBTTTTBSHHH
T ss_pred -ccCH----HHHHHHHHHcC-----CeEEEEECCCCCCHHH
Confidence 1111 22233334444 4789999999999976
No 98
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.67 E-value=1.8e-16 Score=157.75 Aligned_cols=156 Identities=18% Similarity=0.188 Sum_probs=96.5
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC
Q 004209 338 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 417 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~ 417 (768)
...++|+++|.+|+|||||+++|++..-. . ......|.+.......+....
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~--~---------------------------~~~~t~~~~~~~~~~~~~~~~ 76 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFR--E---------------------------NISATLGVDFQMKTLIVDGER 76 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHCCCC---------------------------------------CEEEEEEETTEE
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhCCCC--c---------------------------cCCCCccceeEEEEEEECCEE
Confidence 45699999999999999999999853110 0 000112233333333333334
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH---cCCCeEEEEEeccccccc
Q 004209 418 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQY 494 (768)
Q Consensus 418 ~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~---lgip~iIVVvNKmDlv~~ 494 (768)
..+.||||||+++|...+...+..+|++|+|+|++.+. .+. .....+..+.. .++| ++||+||+|+.+.
T Consensus 77 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~~~---s~~----~~~~~~~~i~~~~~~~~p-iilv~NK~Dl~~~ 148 (199)
T 2p5s_A 77 TVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEK---SFL----NIREWVDMIEDAAHETVP-IMLVGNKADIRDT 148 (199)
T ss_dssp EEEEEEECTTCTTCHHHHHHHHHHCSEEEEEEETTCHH---HHH----THHHHHHHHHHHC---CC-EEEEEECGGGHHH
T ss_pred EEEEEEECCCCcchhhhHHHHHhhCCEEEEEEECCChH---HHH----HHHHHHHHHHHhcCCCCC-EEEEEECcccccc
Confidence 67999999999999998888899999999999998752 111 12222333333 3677 8999999999742
Q ss_pred chh-hHHH-HHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 495 SKD-RFDS-IKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 495 s~e-~~~~-i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
... .... ..++...+.+..+ ++++++||++|.|+.+
T Consensus 149 ~~~~~~~~v~~~~~~~~~~~~~-----~~~~~~SA~~g~gv~e 186 (199)
T 2p5s_A 149 AATEGQKCVPGHFGEKLAMTYG-----ALFCETSAKDGSNIVE 186 (199)
T ss_dssp HHHTTCCCCCHHHHHHHHHHHT-----CEEEECCTTTCTTHHH
T ss_pred cccccccccCHHHHHHHHHHcC-----CeEEEeeCCCCCCHHH
Confidence 100 0000 1122233333444 4789999999999976
No 99
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.67 E-value=6.9e-17 Score=173.11 Aligned_cols=149 Identities=28% Similarity=0.273 Sum_probs=102.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCe
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 418 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~ 418 (768)
+..+|+|+|++|+|||||+++|++....+. ...+++|.+.....+..++.
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~------------------------------s~~~~tTr~~~~gi~~~~~~ 56 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISIT------------------------------SRKAQTTRHRIVGIHTEGAY 56 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEEC------------------------------CCCSSCCSSCEEEEEEETTE
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCcccc------------------------------CCCCCcceeeEEEEEEECCe
Confidence 456899999999999999999995422111 11234454444445667888
Q ss_pred EEEEEeCCCcc-chHH--------HHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecc
Q 004209 419 HVVVLDSPGHK-DFVP--------NMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKM 489 (768)
Q Consensus 419 ~i~lIDTPGh~-~f~~--------~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKm 489 (768)
+++|+||||+. .... ....++..+|++++|+|++. . ..+++..+..+...+.| +|+|+||+
T Consensus 57 ~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~-~--------~~~~~~i~~~l~~~~~P-~ilvlNK~ 126 (301)
T 1ega_A 57 QAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR-W--------TPDDEMVLNKLREGKAP-VILAVNKV 126 (301)
T ss_dssp EEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC-C--------CHHHHHHHHHHHSSSSC-EEEEEEST
T ss_pred eEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCC-C--------CHHHHHHHHHHHhcCCC-EEEEEECc
Confidence 99999999987 3322 22455677999999999975 2 34566666666666888 78999999
Q ss_pred cccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 490 DAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 490 Dlv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
|+... .+.+ ...+..+.+.+++ ..++|+||++|.|+.+
T Consensus 127 D~~~~-~~~~---~~~l~~l~~~~~~----~~~i~iSA~~g~~v~~ 164 (301)
T 1ega_A 127 DNVQE-KADL---LPHLQFLASQMNF----LDIVPISAETGLNVDT 164 (301)
T ss_dssp TTCCC-HHHH---HHHHHHHHTTSCC----SEEEECCTTTTTTHHH
T ss_pred ccCcc-HHHH---HHHHHHHHHhcCc----CceEEEECCCCCCHHH
Confidence 99751 2322 2333333333443 2689999999999965
No 100
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.67 E-value=1.9e-16 Score=158.27 Aligned_cols=149 Identities=17% Similarity=0.156 Sum_probs=99.8
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC
Q 004209 338 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 417 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~ 417 (768)
...++|+|+|++|+|||||+++|++..- ..+..++++.+.....+..++
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~ 66 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKF-------------------------------NPSFITTIGIDFKIKTVDING 66 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCC-------------------------------CCSSSCCCSCCEEEEEEEETT
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCC-------------------------------CcccCCcccceEEEEEEEECC
Confidence 3468999999999999999999994211 111223444445455555555
Q ss_pred --eEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHc---CCCeEEEEEeccccc
Q 004209 418 --YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAV 492 (768)
Q Consensus 418 --~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~l---gip~iIVVvNKmDlv 492 (768)
..+.||||||+.+|...+...+..+|++|+|+|++.+. .+. .....+..+... ++| +++|+||+|+.
T Consensus 67 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~~----~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~ 138 (213)
T 3cph_A 67 KKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDER---TFT----NIKQWFKTVNEHANDEAQ-LLLVGNKSDME 138 (213)
T ss_dssp EEEEEEEECCTTGGGGTCCCHHHHTTCSEEEEEEETTCHH---HHH----THHHHHHHHHHHTTTCSE-EEEEEECTTCS
T ss_pred EEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCCHH---HHH----HHHHHHHHHHHhcCCCCC-EEEEEECCCCc
Confidence 67999999999998877788889999999999998742 111 222333333332 555 89999999994
Q ss_pred ccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 493 QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 493 ~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
.. .... .+...+.+.++ ++++++||++|.|+.+
T Consensus 139 ~~-~~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~ 171 (213)
T 3cph_A 139 TR-VVTA----DQGEALAKELG-----IPFIESSAKNDDNVNE 171 (213)
T ss_dssp SC-CSCH----HHHHHHHHHHT-----CCEEECBTTTTBSSHH
T ss_pred cc-ccCH----HHHHHHHHHcC-----CEEEEEeCCCCCCHHH
Confidence 31 1111 22233333444 3689999999999976
No 101
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.67 E-value=1e-16 Score=156.22 Aligned_cols=152 Identities=17% Similarity=0.180 Sum_probs=96.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC-
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN- 417 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~- 417 (768)
..++|+++|++|+|||||+++|++.. ... ......+.+. ...+..++
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~--~~~---------------------------~~~~t~~~~~---~~~~~~~~~ 52 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQ--FVD---------------------------SYDPTIENTF---TKLITVNGQ 52 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSS--CCS---------------------------CCCTTCCEEE---EEEEEETTE
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCC--CCC---------------------------CCCCCccccE---EEEEEECCE
Confidence 46899999999999999999999421 000 0001122222 22333344
Q ss_pred -eEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccch
Q 004209 418 -YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 496 (768)
Q Consensus 418 -~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~ 496 (768)
..+.||||||+++|...+...+..+|++|+|+|++... .++.+..+..+.+..+...++| +++|+||+|+.+...
T Consensus 53 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~ 128 (181)
T 3t5g_A 53 EYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIK---SFEVIKVIHGKLLDMVGKVQIP-IMLVGNKKDLHMERV 128 (181)
T ss_dssp EEEEEEEECCCCCTTCCCCGGGTTTCSEEEEEEETTCHH---HHHHHHHHHHHHHHHC----CC-EEEEEECTTCTTTCC
T ss_pred EEEEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECCCHH---HHHHHHHHHHHHHHhcCCCCCC-EEEEEECccchhcce
Confidence 67799999999998666667788899999999998742 2222222222232333334677 899999999864222
Q ss_pred hhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 497 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 497 e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
.. .++...+.+.++ ++++++||++|.|+.+
T Consensus 129 ~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~ 158 (181)
T 3t5g_A 129 IS----YEEGKALAESWN-----AAFLESSAKENQTAVD 158 (181)
T ss_dssp SC----HHHHHHHHHHTT-----CEEEECCTTSHHHHHH
T ss_pred ec----HHHHHHHHHHhC-----CcEEEEecCCCCCHHH
Confidence 11 123334444444 4789999999999976
No 102
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.67 E-value=1.1e-16 Score=159.04 Aligned_cols=150 Identities=19% Similarity=0.171 Sum_probs=95.5
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC
Q 004209 338 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 417 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~ 417 (768)
++.++|+++|++|+|||||+++|+... + .. ...|+......+...+
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~----------------------~-----~~-------~~~t~~~~~~~~~~~~ 72 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGE----------------------I-----VT-------TIPTIGFNVETVEYKN 72 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSC----------------------C-----EE-------EEEETTEEEEEEEETT
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCC----------------------c-----cc-------cCCcCceeEEEEEECC
Confidence 356899999999999999999997310 0 00 0113333344556688
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH----cCCCeEEEEEecccccc
Q 004209 418 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS----FGVDQLIVAVNKMDAVQ 493 (768)
Q Consensus 418 ~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~----lgip~iIVVvNKmDlv~ 493 (768)
..+.||||||+++|...+...+..+|++|+|+|++.+. .+. ...+.+..+.. .++| +++|+||+|+.+
T Consensus 73 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~---s~~----~~~~~l~~~~~~~~~~~~p-iilv~NK~Dl~~ 144 (192)
T 2b6h_A 73 ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRE---RVQ----ESADELQKMLQEDELRDAV-LLVFANKQDMPN 144 (192)
T ss_dssp EEEEEEECC-----CTTHHHHHHTCCEEEEEEETTCGG---GHH----HHHHHHHHHHTCGGGTTCE-EEEEEECTTSTT
T ss_pred EEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHH---HHH----HHHHHHHHHhcccccCCCe-EEEEEECCCCCC
Confidence 99999999999998777777888999999999998752 121 12222222221 2566 899999999975
Q ss_pred cchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 494 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 494 ~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
. ...+++...+... ......++++++||++|.|+.+
T Consensus 145 ~--~~~~~i~~~~~~~----~~~~~~~~~~~~SA~~g~gi~~ 180 (192)
T 2b6h_A 145 A--MPVSELTDKLGLQ----HLRSRTWYVQATCATQGTGLYD 180 (192)
T ss_dssp C--CCHHHHHHHTTGG----GCSSCCEEEEECBTTTTBTHHH
T ss_pred C--CCHHHHHHHhCcc----cccCCceEEEECcCCCcCCHHH
Confidence 2 2223333333221 1222346789999999999976
No 103
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.66 E-value=3.8e-16 Score=153.03 Aligned_cols=146 Identities=21% Similarity=0.260 Sum_probs=101.0
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC
Q 004209 338 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 417 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~ 417 (768)
++.++|+++|+.|+|||||+++|++.. ......+++|++.....+..++
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~~~-------------------------------~~~~~~~~~t~~~~~~~~~~~~ 53 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTGEN-------------------------------VYIGNWPGVTVEKKEGEFEYNG 53 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHTTC-------------------------------EEEEECTTSCCEEEEEEEEETT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC-------------------------------ccccCCCCeeccceEEEEEeCC
Confidence 456899999999999999999998421 0112235777777777777788
Q ss_pred eEEEEEeCCCccchH------HHHHHhc--ccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecc
Q 004209 418 YHVVVLDSPGHKDFV------PNMISGA--TQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKM 489 (768)
Q Consensus 418 ~~i~lIDTPGh~~f~------~~~i~g~--~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKm 489 (768)
..+.||||||+.+|. ......+ ..+|++++|+|++.. ......+..+...++| +++|+||+
T Consensus 54 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~~~~~~~~~~~~~~~p-iilv~nK~ 122 (188)
T 2wjg_A 54 EKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATAL----------ERNLYLTLQLMEMGAN-LLLALNKM 122 (188)
T ss_dssp EEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGGH----------HHHHHHHHHHHTTTCC-EEEEEECH
T ss_pred cEEEEEECCCcCccccccHHHHHHHHHHhccCCCEEEEEecchhH----------HHHHHHHHHHHhcCCC-EEEEEEhh
Confidence 999999999988763 1122222 359999999998741 2334444555556787 89999999
Q ss_pred cccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 490 DAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 490 Dlv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
|+.... ... ..+..+.+.++ ++++++||++|.|+.+
T Consensus 123 Dl~~~~--~~~---~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~ 158 (188)
T 2wjg_A 123 DLAKSL--GIE---IDVDKLEKILG-----VKVVPLSAAKKMGIEE 158 (188)
T ss_dssp HHHHHT--TCC---CCHHHHHHHHT-----SCEEECBGGGTBSHHH
T ss_pred hccccc--cch---HHHHHHHHHhC-----CCeEEEEecCCCCHHH
Confidence 987421 111 12223333334 4789999999999976
No 104
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.66 E-value=6.7e-17 Score=160.89 Aligned_cols=150 Identities=16% Similarity=0.157 Sum_probs=98.0
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeC-
Q 004209 338 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK- 416 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~- 416 (768)
...++|+++|++|+|||||+++|++.... ....+.++.+.....+..+
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~-------------------------------~~~~~t~~~~~~~~~~~~~~ 54 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFS-------------------------------NQYKATIGADFLTKEVMVDD 54 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCC-------------------------------SSCCCCCSEEEEEEEEESSS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCC-------------------------------CCCCCcccceEEEEEEEECC
Confidence 35689999999999999999999953110 1112333444444444444
Q ss_pred -CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHH-HHHH------cCCCeEEEEEec
Q 004209 417 -NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQ-LIRS------FGVDQLIVAVNK 488 (768)
Q Consensus 417 -~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~-ll~~------lgip~iIVVvNK 488 (768)
...+.||||||+.+|...+...+..+|++|+|+|++.+. .+.. ....+. +... .++| +++|+||
T Consensus 55 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~----~~~~~~~~~~~~~~~~~~~~p-iilv~nK 126 (207)
T 1vg8_A 55 RLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPN---TFKT----LDSWRDEFLIQASPRDPENFP-FVVLGNK 126 (207)
T ss_dssp CEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCHH---HHHT----HHHHHHHHHHHHCCSSGGGSC-EEEEEEC
T ss_pred EEEEEEEEeCCCcHHHHHhHHHHHhCCcEEEEEEECCCHH---HHHH----HHHHHHHHHHhcccccCCCCc-EEEEEEC
Confidence 368999999999998877777888999999999998752 1111 111111 1111 3566 8999999
Q ss_pred ccccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 489 MDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 489 mDlv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
+|+... .... .++..+.... ..++++++||++|.|+.+
T Consensus 127 ~Dl~~~-~~~~----~~~~~~~~~~----~~~~~~~~Sa~~g~gi~~ 164 (207)
T 1vg8_A 127 IDLENR-QVAT----KRAQAWCYSK----NNIPYFETSAKEAINVEQ 164 (207)
T ss_dssp TTSSCC-CSCH----HHHHHHHHHT----TSCCEEECBTTTTBSHHH
T ss_pred CCCccc-ccCH----HHHHHHHHhc----CCceEEEEeCCCCCCHHH
Confidence 999742 1111 1222222211 235789999999999976
No 105
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.66 E-value=3.3e-16 Score=154.74 Aligned_cols=151 Identities=19% Similarity=0.171 Sum_probs=103.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCe
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 418 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~ 418 (768)
..++|+|+|..|+|||||+++|++..-.. ......|++.......+.....
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~~~ 72 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDTFTP-----------------------------AFVSTVGIDFKVKTVYRHEKRV 72 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHTTCC-----------------------------CEEEEETTTEEEEEEEETTTTE
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCCCCc-----------------------------ccCCCeeeEEEEEEEEECCEEE
Confidence 46899999999999999999999531100 0011123444444455555778
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH---cCCCeEEEEEecccccccc
Q 004209 419 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQYS 495 (768)
Q Consensus 419 ~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~---lgip~iIVVvNKmDlv~~s 495 (768)
.+.||||||+++|...+...+..+|++|+|+|++... .++ .....+..+.. .++| +++|+||+|+.+..
T Consensus 73 ~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~----~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~ 144 (191)
T 3dz8_A 73 KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEE---SFN----AVQDWATQIKTYSWDNAQ-VILVGNKCDMEEER 144 (191)
T ss_dssp EEEEECHHHHHHCHHHHHHHHTTCCEEEEEEETTCHH---HHH----THHHHHHHHHHHSCTTCE-EEEEEECTTCGGGC
T ss_pred EEEEEeCCChHHHHHHHHHHHccCCEEEEEEECcCHH---HHH----HHHHHHHHHHHhcCCCCC-EEEEEECCCCcccc
Confidence 8999999999999999999999999999999998742 121 22333333333 3555 89999999997532
Q ss_pred hhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 496 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 496 ~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
.... .+...+.+..+ ++++++||++|.|+.+
T Consensus 145 ~~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~ 175 (191)
T 3dz8_A 145 VVPT----EKGQLLAEQLG-----FDFFEASAKENISVRQ 175 (191)
T ss_dssp CSCH----HHHHHHHHHHT-----CEEEECBTTTTBSHHH
T ss_pred ccCH----HHHHHHHHHcC-----CeEEEEECCCCCCHHH
Confidence 2111 22333333444 4789999999999976
No 106
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.66 E-value=5.1e-16 Score=147.32 Aligned_cols=147 Identities=18% Similarity=0.155 Sum_probs=94.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeC--
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK-- 416 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~-- 416 (768)
+.++|+++|+.|+|||||+++|++.... . .. ..++.......+...
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~--~-----------------------------~~-~~~~~~~~~~~~~~~~~ 49 (166)
T 2ce2_X 2 TEYKLVVVGAGGVGKSALTIQLIQNHFV--D-----------------------------EC-DPTIEDSYRKQVVIDGE 49 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSSCC--S-----------------------------CC-CTTCCEEEEEEEEETTE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCcCc--c-----------------------------cc-CCccceEEEEEEEECCE
Confidence 4579999999999999999999853110 0 00 011111111222223
Q ss_pred CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH----cCCCeEEEEEeccccc
Q 004209 417 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS----FGVDQLIVAVNKMDAV 492 (768)
Q Consensus 417 ~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~----lgip~iIVVvNKmDlv 492 (768)
...+.||||||+.+|...+...+..+|++|+|+|++... .+. ...+.+..+.. .++| +++|+||+|+.
T Consensus 50 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~~----~~~~~~~~i~~~~~~~~~p-~iiv~nK~Dl~ 121 (166)
T 2ce2_X 50 TCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTK---SFE----DIHQYREQIKRVKDSDDVP-MVLVGNKSDLA 121 (166)
T ss_dssp EEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEEETTCHH---HHH----HHHHHHHHHHHHHTCSCCC-EEEEEECTTCS
T ss_pred EEEEEEEECCCchhhhHHHHHhhccCCEEEEEEECCCHH---HHH----HHHHHHHHHHHhcCCCCCc-EEEEEEchhhh
Confidence 456889999999998888888888999999999998642 111 12222222222 2677 89999999987
Q ss_pred ccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 493 QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 493 ~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
.. ... ..++..+.+..+ ++++++||++|.|+.+
T Consensus 122 ~~-~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~ 154 (166)
T 2ce2_X 122 AR-TVE----SRQAQDLARSYG-----IPYIETSAKTRQGVED 154 (166)
T ss_dssp CC-CSC----HHHHHHHHHHHT-----CCEEEECTTTCTTHHH
T ss_pred hc-ccC----HHHHHHHHHHcC-----CeEEEecCCCCCCHHH
Confidence 52 111 122333334444 4789999999999976
No 107
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.66 E-value=3.3e-16 Score=156.33 Aligned_cols=149 Identities=19% Similarity=0.161 Sum_probs=99.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC-
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN- 417 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~- 417 (768)
..++|+|+|++|+|||||+++|++..- .....+.++.+.....+..++
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~-------------------------------~~~~~~t~~~~~~~~~~~~~~~ 55 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDDTY-------------------------------TNDYISTIGVDFKIKTVELDGK 55 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCC-------------------------------CTTCCCSSCCCEEEEEEEETTE
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCC-------------------------------CCCCCCcccceeEEEEEEECCE
Confidence 468999999999999999999985311 111123344444444444444
Q ss_pred -eEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH---cCCCeEEEEEecccccc
Q 004209 418 -YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQ 493 (768)
Q Consensus 418 -~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~---lgip~iIVVvNKmDlv~ 493 (768)
..+.||||||+++|...+...+..+|++|+|+|++.+. .+. .....+..+.. .++| ++||+||+|+.+
T Consensus 56 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~~~---s~~----~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~ 127 (206)
T 2bcg_Y 56 TVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQE---SFN----GVKMWLQEIDRYATSTVL-KLLVGNKCDLKD 127 (206)
T ss_dssp EEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCHH---HHH----HHHHHHHHHHHHSCTTCE-EEEEEECTTCTT
T ss_pred EEEEEEEeCCChHHHHHHHHHhccCCCEEEEEEECcCHH---HHH----HHHHHHHHHHHhcCCCCC-EEEEEECCCCcc
Confidence 57999999999998877788889999999999998752 111 12222333333 2455 899999999975
Q ss_pred cchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 494 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 494 ~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
...... .+...+.+..+ ++++++||++|.|+.+
T Consensus 128 ~~~~~~----~~~~~~~~~~~-----~~~~~~Sa~~g~gi~~ 160 (206)
T 2bcg_Y 128 KRVVEY----DVAKEFADANK-----MPFLETSALDSTNVED 160 (206)
T ss_dssp TCCSCH----HHHHHHHHHTT-----CCEEECCTTTCTTHHH
T ss_pred ccccCH----HHHHHHHHHcC-----CeEEEEeCCCCCCHHH
Confidence 321111 12233333333 4789999999999976
No 108
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.66 E-value=7.7e-16 Score=154.95 Aligned_cols=147 Identities=15% Similarity=0.106 Sum_probs=97.7
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeC-
Q 004209 338 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK- 416 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~- 416 (768)
...++|+|+|++|+|||||+++|++..- .....+.++.+.....+...
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~-------------------------------~~~~~~t~~~~~~~~~~~~~~ 71 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKF-------------------------------NPKFITTVGIDFREKRVVYNA 71 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCC-------------------------------CCEEEEEEEEEEEEEEEEEEC
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCC-------------------------------CcCCCCceeEEEEEEEEEECC
Confidence 3468999999999999999999984210 01111222333333233322
Q ss_pred -----------CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH-------cC
Q 004209 417 -----------NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-------FG 478 (768)
Q Consensus 417 -----------~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~-------lg 478 (768)
...+.||||||+++|...+...+..+|++|+|+|++... .......++.. .+
T Consensus 72 ~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~----------s~~~~~~~l~~i~~~~~~~~ 141 (217)
T 2f7s_A 72 QGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQ----------SFLNVRNWMSQLQANAYCEN 141 (217)
T ss_dssp -------CCEEEEEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHH----------HHHHHHHHHHTCCCCCTTTC
T ss_pred ccccccccCceeEEEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHH----------HHHHHHHHHHHHHHhcCcCC
Confidence 568999999999999988888999999999999998742 11111222222 24
Q ss_pred CCeEEEEEecccccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 479 VDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 479 ip~iIVVvNKmDlv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
+| +|||+||+|+.+..... ..++..+.+..+ ++++++||++|.|+.+
T Consensus 142 ~p-iilV~NK~Dl~~~~~v~----~~~~~~~~~~~~-----~~~~~~Sa~~g~gi~~ 188 (217)
T 2f7s_A 142 PD-IVLIGNKADLPDQREVN----ERQARELADKYG-----IPYFETSAATGQNVEK 188 (217)
T ss_dssp CE-EEEEEECTTCGGGCCSC----HHHHHHHHHHTT-----CCEEEEBTTTTBTHHH
T ss_pred CC-EEEEEECCccccccccC----HHHHHHHHHHCC-----CcEEEEECCCCCCHHH
Confidence 45 89999999997521111 123333444444 4789999999999976
No 109
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.66 E-value=4.5e-16 Score=175.15 Aligned_cols=144 Identities=27% Similarity=0.300 Sum_probs=99.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCeEE
Q 004209 341 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 420 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~~i 420 (768)
++|+|+|.+|+|||||+|+|++....+ .+..+|+|.+.....+.+.+..+
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~------------------------------v~~~~g~T~d~~~~~~~~~~~~~ 51 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAI------------------------------VEDEEGVTRDPVQDTVEWYGKTF 51 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------------------------------------CCSEEEEEETTEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCce------------------------------ecCCCCCccceeeEEEEECCeEE
Confidence 579999999999999999999532211 12247889888888888899999
Q ss_pred EEEeCCCccc---------hHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccc
Q 004209 421 VVLDSPGHKD---------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDA 491 (768)
Q Consensus 421 ~lIDTPGh~~---------f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDl 491 (768)
.||||||... +...+..++..||++|+|+|+..+. .....+...+++..++| +|+|+||+|+
T Consensus 52 ~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~--------~~~d~~i~~~l~~~~~p-~ilv~NK~D~ 122 (439)
T 1mky_A 52 KLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGI--------TKEDESLADFLRKSTVD-TILVANKAEN 122 (439)
T ss_dssp EEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCC--------CHHHHHHHHHHHHHTCC-EEEEEESCCS
T ss_pred EEEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCCC--------CHHHHHHHHHHHHcCCC-EEEEEeCCCC
Confidence 9999999654 3445567788999999999998763 23444555666667888 8999999998
Q ss_pred cccchhhHHHHHHHH-hHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 492 VQYSKDRFDSIKVQL-GTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 492 v~~s~e~~~~i~~el-~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
... . ..++ ..+ ..+++. +++++||++|.|+.+
T Consensus 123 ~~~---~----~~~~~~~~-~~lg~~----~~~~iSA~~g~gv~~ 155 (439)
T 1mky_A 123 LRE---F----EREVKPEL-YSLGFG----EPIPVSAEHNINLDT 155 (439)
T ss_dssp HHH---H----HHHTHHHH-GGGSSC----SCEECBTTTTBSHHH
T ss_pred ccc---c----HHHHHHHH-HhcCCC----CEEEEeccCCCCHHH
Confidence 631 1 1122 222 234542 469999999999976
No 110
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.66 E-value=1.2e-16 Score=157.10 Aligned_cols=151 Identities=19% Similarity=0.175 Sum_probs=99.2
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC
Q 004209 338 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 417 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~ 417 (768)
.+.++|+++|++|+|||||+++|++..-. .......|++.......+....
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-----------------------------~~~~~t~~~~~~~~~~~~~~~~ 63 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDDTFD-----------------------------PELAATIGVDFKVKTISVDGNK 63 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCC-----------------------------TTCCCCCSEEEEEEEEEETTEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCC-----------------------------ccCCCccceEEEEEEEEECCeE
Confidence 35689999999999999999999853100 0011122344444444444445
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH----cCCCeEEEEEecccccc
Q 004209 418 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS----FGVDQLIVAVNKMDAVQ 493 (768)
Q Consensus 418 ~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~----lgip~iIVVvNKmDlv~ 493 (768)
..+.||||||+++|...+...+..+|++|+|+|++.+. .+. .....+..+.. .++| +++|+||+|+..
T Consensus 64 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~~----~~~~~~~~i~~~~~~~~~p-~ilv~nK~Dl~~ 135 (195)
T 1x3s_A 64 AKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRD---TFV----KLDNWLNELETYCTRNDIV-NMLVGNKIDKEN 135 (195)
T ss_dssp EEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCHH---HHH----THHHHHHHHTTCCSCSCCE-EEEEEECTTSSS
T ss_pred EEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECcCHH---HHH----HHHHHHHHHHHhcCcCCCc-EEEEEECCcCcc
Confidence 78999999999998888888889999999999998742 111 12222223322 2445 899999999954
Q ss_pred cchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 494 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 494 ~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
.. .. .++...+++..+ ++++++||++|.|+.+
T Consensus 136 ~~-~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~ 167 (195)
T 1x3s_A 136 RE-VD----RNEGLKFARKHS-----MLFIEASAKTCDGVQC 167 (195)
T ss_dssp CC-SC----HHHHHHHHHHTT-----CEEEECCTTTCTTHHH
T ss_pred cc-cC----HHHHHHHHHHcC-----CEEEEecCCCCCCHHH
Confidence 21 11 122333444433 4789999999999976
No 111
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.66 E-value=5.6e-16 Score=150.90 Aligned_cols=155 Identities=17% Similarity=0.172 Sum_probs=96.3
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC
Q 004209 338 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 417 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~ 417 (768)
+..++|+++|++|+|||||+++|++.. +... . ....+.+.. ....+....
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~--~~~~-------------------------~--~~t~~~~~~-~~~~~~~~~ 52 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNA--FPGE-------------------------Y--IPTVFDNYS-ANVMVDGKP 52 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSS--CCSS-------------------------C--CCCSCCEEE-EEEEETTEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCC--CCCC-------------------------c--CCcccceeE-EEEEECCEE
Confidence 456899999999999999999998521 1000 0 000111111 111222233
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhH-HHHHHHHHc--CCCeEEEEEeccccccc
Q 004209 418 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTR-EHAQLIRSF--GVDQLIVAVNKMDAVQY 494 (768)
Q Consensus 418 ~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~-e~l~ll~~l--gip~iIVVvNKmDlv~~ 494 (768)
..+.||||||+++|...+...+..+|++|+|+|++.+. .+. ... ..+..+... ++| +++|+||+|+.+.
T Consensus 53 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~----~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~ 124 (186)
T 1mh1_A 53 VNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPA---SFE----NVRAKWYPEVRHHCPNTP-IILVGTKLDLRDD 124 (186)
T ss_dssp EEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHH---HHH----HHHHTHHHHHHHHSTTSC-EEEEEECHHHHTC
T ss_pred EEEEEEECCCCHhHHHHHHHhccCCcEEEEEEECCChh---hHH----HHHHHHHHHHHHhCCCCC-EEEEeEccccccc
Confidence 56779999999998877777888999999999998742 111 111 223333333 677 8999999999753
Q ss_pred chhhHHHH---------HHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 495 SKDRFDSI---------KVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 495 s~e~~~~i---------~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
....+.+ ..+...+.+..++ .+++++||++|.|+.+
T Consensus 125 -~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~Sa~~g~gi~~ 169 (186)
T 1mh1_A 125 -KDTIEKLKEKKLTPITYPQGLAMAKEIGA----VKYLECSALTQRGLKT 169 (186)
T ss_dssp -HHHHHHHHHTTCCCCCHHHHHHHHHHTTC----SEEEECCTTTCTTHHH
T ss_pred -chhhhhhcccccccCCHHHHHHHHHhcCC----cEEEEecCCCccCHHH
Confidence 1111111 1222333444432 4789999999999976
No 112
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.66 E-value=4.3e-17 Score=158.88 Aligned_cols=150 Identities=22% Similarity=0.228 Sum_probs=94.3
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC
Q 004209 338 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 417 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~ 417 (768)
++.++|+++|++|+|||||+++|++..- . ......| .....+..++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~--~----------------------------~~~~t~~----~~~~~~~~~~ 61 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV--V----------------------------TTKPTIG----FNVETLSYKN 61 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE--E----------------------------EECSSTT----CCEEEEEETT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc--C----------------------------ccCCcCc----cceEEEEECC
Confidence 3568999999999999999999983210 0 0001112 1223344567
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHH----HcCCCeEEEEEecccccc
Q 004209 418 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR----SFGVDQLIVAVNKMDAVQ 493 (768)
Q Consensus 418 ~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~----~lgip~iIVVvNKmDlv~ 493 (768)
..+.||||||+.+|...+...+..+|++|+|+|++... .+ ....+.+..+. ..++| +++|+||+|+.+
T Consensus 62 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~----~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~ 133 (183)
T 1moz_A 62 LKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKD---RM----STASKELHLMLQEEELQDAA-LLVFANKQDQPG 133 (183)
T ss_dssp EEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTT---TH----HHHHHHHHHHTTSSTTSSCE-EEEEEECTTSTT
T ss_pred EEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHH---HH----HHHHHHHHHHHcChhhCCCe-EEEEEECCCCCC
Confidence 89999999999988777778888999999999998752 11 12222222222 23555 899999999975
Q ss_pred cchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 494 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 494 ~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
. ...+++.+ .+....+....++++++||++|.|+.+
T Consensus 134 ~--~~~~~i~~----~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 169 (183)
T 1moz_A 134 A--LSASEVSK----ELNLVELKDRSWSIVASSAIKGEGITE 169 (183)
T ss_dssp C--CCHHHHHH----HTTTTTCCSSCEEEEEEBGGGTBTHHH
T ss_pred C--CCHHHHHH----HhCcccccCCceEEEEccCCCCcCHHH
Confidence 2 22222322 222222223346899999999999976
No 113
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.65 E-value=2.4e-16 Score=153.98 Aligned_cols=141 Identities=18% Similarity=0.192 Sum_probs=94.5
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCeE
Q 004209 340 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 419 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~~ 419 (768)
..+|+++|.+|+|||||+++|++....+ ....+++|.+.....+..++..
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~------------------------------~~~~~~~t~~~~~~~~~~~~~~ 53 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREAAI------------------------------VTDIAGTTRDVLREHIHIDGMP 53 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSC------------------------------CCSSTTCCCSCEEEEEEETTEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcce------------------------------eeCCCCceeceeeEEEEECCeE
Confidence 4789999999999999999998432110 0112556666655666677888
Q ss_pred EEEEeCCCccch--------HHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH---cCCCeEEEEEec
Q 004209 420 VVVLDSPGHKDF--------VPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNK 488 (768)
Q Consensus 420 i~lIDTPGh~~f--------~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~---lgip~iIVVvNK 488 (768)
+.||||||+.++ +..+...+..+|++|+|+|++.... +. ..+.+..+.. .++| +|+|+||
T Consensus 54 ~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s---~~-----~~~~~~~~~~~~~~~~p-~ilv~NK 124 (172)
T 2gj8_A 54 LHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDA---VD-----PAEIWPEFIARLPAKLP-ITVVRNK 124 (172)
T ss_dssp EEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCC---CS-----HHHHCHHHHHHSCTTCC-EEEEEEC
T ss_pred EEEEECCCcccchhHHHHHHHHHHHHHHHhCCEEEEEEECCCCCC---HH-----HHHHHHHHHHhcccCCC-EEEEEEC
Confidence 999999998653 1223356788999999999987531 11 1122222222 2577 8999999
Q ss_pred ccccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 489 MDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 489 mDlv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
+|+.+...+ +.+. ...+++++||++|.|+.+
T Consensus 125 ~Dl~~~~~~-----------~~~~-----~~~~~~~~SA~~g~gv~~ 155 (172)
T 2gj8_A 125 ADITGETLG-----------MSEV-----NGHALIRLSARTGEGVDV 155 (172)
T ss_dssp HHHHCCCCE-----------EEEE-----TTEEEEECCTTTCTTHHH
T ss_pred ccCCcchhh-----------hhhc-----cCCceEEEeCCCCCCHHH
Confidence 999642111 0001 135789999999999976
No 114
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.65 E-value=1.2e-15 Score=155.61 Aligned_cols=156 Identities=17% Similarity=0.192 Sum_probs=99.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCe
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 418 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~ 418 (768)
..++|+++|.+|+|||||+++|++..- ......++|.+.....+...+.
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~~~-------------------------------~~~~~~~~t~~~~~~~~~~~~~ 76 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRANV-------------------------------DVQSYSFTTKNLYVGHFDHKLN 76 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTTCE-------------------------------EEECC-----CEEEEEEEETTE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-------------------------------ccCCCCCcceeeeeeeeecCCC
Confidence 468999999999999999999984210 0111245566666666777889
Q ss_pred EEEEEeCCCc------cch---HHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHc--CCCeEEEEEe
Q 004209 419 HVVVLDSPGH------KDF---VPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVN 487 (768)
Q Consensus 419 ~i~lIDTPGh------~~f---~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~l--gip~iIVVvN 487 (768)
.+.||||||+ +.. ...+......+|++|+|+|++... .+. .....+.+..+... ++| +|+|+|
T Consensus 77 ~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~--~~~~~~~~~~l~~~~~~~p-iilv~n 150 (228)
T 2qu8_A 77 KYQIIDTPGLLDRAFENRNTIEMTTITALAHINGVILFIIDISEQC---GLT--IKEQINLFYSIKSVFSNKS-IVIGFN 150 (228)
T ss_dssp EEEEEECTTTTTSCGGGCCHHHHHHHHHHHTSSEEEEEEEETTCTT---SSC--HHHHHHHHHHHHTCC-CCC-EEEEEE
T ss_pred eEEEEECCCCcCcccchhhhHHHHHHHHhhccccEEEEEEeccccc---Ccc--hHHHHHHHHHHHHhhcCCc-EEEEEe
Confidence 9999999998 442 222333467789999999998752 111 01223344444444 677 899999
Q ss_pred cccccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 488 KMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 488 KmDlv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
|+|+.+. .+........+..+.+..+ ..++++++||++|.|+.+
T Consensus 151 K~Dl~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~SA~~g~gi~~ 194 (228)
T 2qu8_A 151 KIDKCNM-DSLSIDNKLLIKQILDNVK---NPIKFSSFSTLTGVGVEQ 194 (228)
T ss_dssp CGGGCC---CCCHHHHHHHHHHHHHCC---SCEEEEECCTTTCTTHHH
T ss_pred CcccCCc-hhhHHHHHHHHHHHHHhcC---CCceEEEEecccCCCHHH
Confidence 9999752 1111222334444444433 125789999999999976
No 115
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.65 E-value=4.9e-16 Score=154.50 Aligned_cols=161 Identities=16% Similarity=0.159 Sum_probs=97.3
Q ss_pred CCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCe--EEEEEEEEE
Q 004209 336 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGI--TMTVAVAYF 413 (768)
Q Consensus 336 ~~~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~Gi--Tid~~~~~~ 413 (768)
.....++|+++|..|+|||||+++|++..... ...+. +.......+
T Consensus 16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~--------------------------------~~~~~~~~~~~~~~~~ 63 (196)
T 3llu_A 16 FQGSKPRILLMGLRRSGKSSIQKVVFHKMSPN--------------------------------ETLFLESTNKIYKDDI 63 (196)
T ss_dssp ----CCEEEEEESTTSSHHHHHHHHHSCCCGG--------------------------------GGGGCCCCCSCEEEEE
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHHhcCCCc--------------------------------ceeeeccccceeeeec
Confidence 34567899999999999999999887421100 00111 111111112
Q ss_pred e-eCCeEEEEEeCCCccchHHHH---HHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHH--HHcCCCeEEEEEe
Q 004209 414 D-SKNYHVVVLDSPGHKDFVPNM---ISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLI--RSFGVDQLIVAVN 487 (768)
Q Consensus 414 ~-~~~~~i~lIDTPGh~~f~~~~---i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll--~~lgip~iIVVvN 487 (768)
. .....+.||||||+++|...+ ...+..+|++|+|+|++... ...+. ...+.+..+ ...++| ++||.|
T Consensus 64 ~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~----~~~~~l~~~~~~~~~~p-iilv~n 137 (196)
T 3llu_A 64 SNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDY-MEALT----RLHITVSKAYKVNPDMN-FEVFIH 137 (196)
T ss_dssp CCTTSCCEEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCC-HHHHH----HHHHHHHHHHHHCTTCE-EEEEEE
T ss_pred cCCCeeEEEEEECCCCHHHHhhhhhcccccccCCEEEEEEECCCch-HHHHH----HHHHHHHHHHhcCCCCc-EEEEEe
Confidence 2 355789999999999987766 67788899999999999852 11111 112222222 112566 899999
Q ss_pred cccccccch--hhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 488 KMDAVQYSK--DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 488 KmDlv~~s~--e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
|+|+++... +....+..+....+.........++++++||++ .|+.+
T Consensus 138 K~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~e~Sa~~-~~v~~ 186 (196)
T 3llu_A 138 KVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYD-HSIFE 186 (196)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCEEEEEECTTS-THHHH
T ss_pred ccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCcceEEEEech-hhHHH
Confidence 999975211 112233333333333333223356899999999 99976
No 116
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.65 E-value=7.5e-16 Score=154.44 Aligned_cols=154 Identities=15% Similarity=0.119 Sum_probs=98.2
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeC-
Q 004209 338 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK- 416 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~- 416 (768)
+..++|+++|.+|+|||||+++|+...- . .....++.+.....+..+
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~--~------------------------------~~~~~t~~~~~~~~~~~~~ 75 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAF--P------------------------------GEYIPTVFDNYSANVMVDG 75 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCC--C------------------------------C-CCCCSEEEEEEEEECC-
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCC--C------------------------------CCcCCeecceeEEEEEECC
Confidence 4579999999999999999999994211 0 001122222222233333
Q ss_pred -CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHc--CCCeEEEEEecccccc
Q 004209 417 -NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQ 493 (768)
Q Consensus 417 -~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~l--gip~iIVVvNKmDlv~ 493 (768)
...+.||||||+++|...+...+..+|++|+|+|++.+. .+.. .....+..+... ++| +|+|+||+|+.+
T Consensus 76 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~---~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~ 148 (204)
T 4gzl_A 76 KPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPA---SFEN---VRAKWYPEVRHHCPNTP-IILVGTKLDLRD 148 (204)
T ss_dssp CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHH---HHHH---HHHTHHHHHHHHCSSCC-EEEEEECHHHHT
T ss_pred EEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEECCCHH---HHHH---HHHHHHHHHHHhCCCCC-EEEEEechhhcc
Confidence 355669999999999888888889999999999998752 1111 111233334433 677 899999999986
Q ss_pred cchhhHHHH---------HHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 494 YSKDRFDSI---------KVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 494 ~s~e~~~~i---------~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
.. ...+.+ ..+...+.+..++ .+++++||++|.|+.+
T Consensus 149 ~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~SA~~g~gi~~ 194 (204)
T 4gzl_A 149 DK-DTIEKLKEKKLTPITYPQGLAMAKEIGA----VKYLECSALTQRGLKT 194 (204)
T ss_dssp CH-HHHHHHHHTTCCCCCHHHHHHHHHHTTC----SEEEECCTTTCTTHHH
T ss_pred ch-hhhhhhhccccccccHHHHHHHHHhcCC----cEEEEeeCCCCCCHHH
Confidence 32 111111 1233344444443 4689999999999976
No 117
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.65 E-value=5.5e-16 Score=174.44 Aligned_cols=154 Identities=23% Similarity=0.215 Sum_probs=104.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCe
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 418 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~ 418 (768)
..++|+|+|++|+|||||+++|++....+ ....+|+|.+.....+..++.
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~------------------------------v~~~~gtT~d~~~~~i~~~g~ 228 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERAL------------------------------VSPIPGTTRDPVDDEVFIDGR 228 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEE------------------------------ECCCC------CCEEEEETTE
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccc------------------------------cCCCCCCcCCceEEEEEECCE
Confidence 45899999999999999999999532211 122367888777677778899
Q ss_pred EEEEEeCCCccchHHH------------HHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEE
Q 004209 419 HVVVLDSPGHKDFVPN------------MISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAV 486 (768)
Q Consensus 419 ~i~lIDTPGh~~f~~~------------~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVv 486 (768)
.+.+|||||..++... ....+..+|++++|+|+..+. ..+..+...++...+.+ +|+|+
T Consensus 229 ~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~--------~~~~~~i~~~l~~~~~~-~ilv~ 299 (439)
T 1mky_A 229 KYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGI--------TRQDQRMAGLMERRGRA-SVVVF 299 (439)
T ss_dssp EEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCC--------CHHHHHHHHHHHHTTCE-EEEEE
T ss_pred EEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCC--------CHHHHHHHHHHHHcCCC-EEEEE
Confidence 9999999997543321 245667899999999998763 23444555666677887 89999
Q ss_pred ecccccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 487 NKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 487 NKmDlv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
||+|+.+......+++.+++...+.... ..+++++||++|.|+.+
T Consensus 300 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~SA~~g~gv~~ 344 (439)
T 1mky_A 300 NKWDLVVHREKRYDEFTKLFREKLYFID----YSPLIFTSADKGWNIDR 344 (439)
T ss_dssp ECGGGSTTGGGCHHHHHHHHHHHCGGGT----TSCEEECBTTTTBSHHH
T ss_pred ECccCCCchhhHHHHHHHHHHHHhccCC----CCcEEEEECCCCCCHHH
Confidence 9999986333224445555544443333 35789999999999976
No 118
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.65 E-value=5.1e-16 Score=152.48 Aligned_cols=159 Identities=13% Similarity=0.079 Sum_probs=98.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEE-----E
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAY-----F 413 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~-----~ 413 (768)
..++|+++|++|+|||||++.|.+........ .+. ........|+...+.. +
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~---------------------~~~--~~~~~~~~t~~~~~~~~~~~~~ 69 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYSKVPEGRKG---------------------EMV--SLATEDERTLFFDFLPLDIGEV 69 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHTSCGGGBC---------------------CCE--EEECSSCEEEEEEECCSSCCCS
T ss_pred cccEEEEECCCCCCHHHHHHHHHhhccccccc---------------------ccc--ccccccccceeeeecccccccc
Confidence 46899999999999999997776421110000 000 0000111233222221 1
Q ss_pred eeCCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH-----cCCCeEEEEEec
Q 004209 414 DSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-----FGVDQLIVAVNK 488 (768)
Q Consensus 414 ~~~~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~-----lgip~iIVVvNK 488 (768)
......+.||||||+++|...+...+..+|++|+|+|++.+...... ........++.. .++| +++|+||
T Consensus 70 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~----~s~~~l~~~l~~~~~~~~~~p-iilv~NK 144 (198)
T 3t1o_A 70 KGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANA----ESMRNMRENLAEYGLTLDDVP-IVIQVNK 144 (198)
T ss_dssp SSCEEEEEEEECCSCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHH----HHHHHHHHHHHHTTCCTTSSC-EEEEEEC
T ss_pred cCCceEEEEEeCCChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhH----HHHHHHHHHHHhhccccCCCC-EEEEEEc
Confidence 22346799999999999998888899999999999999854211100 111222223333 3566 8999999
Q ss_pred ccccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 489 MDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 489 mDlv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
+|+.+. .. .+++..+++..++ .+++++||++|.|+.+
T Consensus 145 ~Dl~~~--~~----~~~~~~~~~~~~~----~~~~~~Sa~~~~gv~~ 181 (198)
T 3t1o_A 145 RDLPDA--LP----VEMVRAVVDPEGK----FPVLEAVATEGKGVFE 181 (198)
T ss_dssp TTSTTC--CC----HHHHHHHHCTTCC----SCEEECBGGGTBTHHH
T ss_pred hhcccc--cC----HHHHHHHHHhcCC----ceEEEEecCCCcCHHH
Confidence 999752 12 2334445544442 2789999999999976
No 119
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.65 E-value=1.3e-16 Score=179.29 Aligned_cols=144 Identities=24% Similarity=0.294 Sum_probs=95.5
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCeE
Q 004209 340 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 419 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~~ 419 (768)
.++|+|+|++|+|||||+|+|++....+ ....+|+|.+.....+.+.+..
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~------------------------------v~~~~g~T~d~~~~~~~~~~~~ 52 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISI------------------------------VEDTPGVTRDRIYSSAEWLNYD 52 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC-----------------------------------------CEEEECTTCSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcee------------------------------ecCCCCCccceEEEEEEECCce
Confidence 3689999999999999999998532111 1234788999888888888999
Q ss_pred EEEEeCCCcc--------chHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccc
Q 004209 420 VVVLDSPGHK--------DFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDA 491 (768)
Q Consensus 420 i~lIDTPGh~--------~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDl 491 (768)
+.||||||+. .+...+..++..||++|+|+|+..+. .....+...+++..++| +|+|+||+|+
T Consensus 53 ~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~--------~~~d~~~~~~l~~~~~p-vilv~NK~D~ 123 (436)
T 2hjg_A 53 FNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGV--------TAADEEVAKILYRTKKP-VVLAVNKLDN 123 (436)
T ss_dssp CEEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTTCS--------CHHHHHHHHHHTTCCSC-EEEEEECCCC
T ss_pred EEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCC--------CHHHHHHHHHHHHcCCC-EEEEEECccC
Confidence 9999999985 56666677888999999999999873 33455566666667887 8999999998
Q ss_pred cccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 492 VQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 492 v~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
..... ++.++. .+++. +++++||++|.|+.+
T Consensus 124 ~~~~~--------~~~~~~-~lg~~----~~~~iSA~~g~gv~~ 154 (436)
T 2hjg_A 124 TEMRA--------NIYDFY-SLGFG----EPYPISGTHGLGLGD 154 (436)
T ss_dssp -------------CCCSSG-GGSSC----CCEECBTTTTBTHHH
T ss_pred ccchh--------hHHHHH-HcCCC----CeEEEeCcCCCChHH
Confidence 74211 111222 33432 569999999999976
No 120
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.65 E-value=7.1e-16 Score=148.01 Aligned_cols=148 Identities=18% Similarity=0.118 Sum_probs=86.8
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeC--C
Q 004209 340 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK--N 417 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~--~ 417 (768)
.++|+++|.+|+|||||+++|++...... .....+.+.....+..+ .
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~ 50 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHA-------------------------------HEMENSEDTYERRIMVDKEE 50 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC-------------------------------------------CEEEEEEEETTEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCccc-------------------------------ccCCCcCCeeeEEEEECCeE
Confidence 47899999999999999999984211100 00112233333333333 4
Q ss_pred eEEEEEeCCCccchHHHH-HHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHH-HH---cCCCeEEEEEeccccc
Q 004209 418 YHVVVLDSPGHKDFVPNM-ISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLI-RS---FGVDQLIVAVNKMDAV 492 (768)
Q Consensus 418 ~~i~lIDTPGh~~f~~~~-i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll-~~---lgip~iIVVvNKmDlv 492 (768)
..+.||||||+.++...+ ...+..+|++|+|+|++... +++. ..+.+..+ .. .++| +++|+||+|+.
T Consensus 51 ~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~----~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~ 122 (169)
T 3q85_A 51 VTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRR---SFSK----VPETLLRLRAGRPHHDLP-VILVGNKSDLA 122 (169)
T ss_dssp EEEEEECCCCC--------CHHHHHCSEEEEEEETTCHH---HHHT----HHHHHHHHHHHSTTSCCC-EEEEEECTTCG
T ss_pred EEEEEEECCCccccchhhhhhhhccCCEEEEEEECCChH---HHHH----HHHHHHHHHhcccCCCCC-EEEEeeCcchh
Confidence 678899999999886633 33467799999999998742 2222 12222222 22 2677 89999999997
Q ss_pred ccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 493 QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 493 ~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
+...... .+...+.+..+ ++++++||++|.|+.+
T Consensus 123 ~~~~~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~ 156 (169)
T 3q85_A 123 RSREVSL----EEGRHLAGTLS-----CKHIETSAALHHNTRE 156 (169)
T ss_dssp GGCCSCH----HHHHHHHHHTT-----CEEEECBTTTTBSHHH
T ss_pred hcccCCH----HHHHHHHHHcC-----CcEEEecCccCCCHHH
Confidence 5322211 22333344443 4789999999999976
No 121
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.65 E-value=1.1e-16 Score=159.96 Aligned_cols=149 Identities=15% Similarity=0.129 Sum_probs=92.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCe
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 418 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~ 418 (768)
+..+|+++|++|+|||||+++|++.. +. + ...|+......+..++.
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~--~~------------------------------~--~~~t~~~~~~~~~~~~~ 69 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDR--LG------------------------------Q--HVPTLHPTSEELTIAGM 69 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC----------------------------------------CCCCCSCEEEEETTE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC--CC------------------------------c--cCCCCCceeEEEEECCE
Confidence 45799999999999999999998321 00 0 00011111234455778
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHH----HcCCCeEEEEEeccccccc
Q 004209 419 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR----SFGVDQLIVAVNKMDAVQY 494 (768)
Q Consensus 419 ~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~----~lgip~iIVVvNKmDlv~~ 494 (768)
.+.||||||+++|...+...+..+|++|+|+|++... .|. .....+..+. ..++| +++|+||+|+...
T Consensus 70 ~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~---s~~----~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~ 141 (198)
T 1f6b_A 70 TFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHE---RLL----ESKEELDSLMTDETIANVP-ILILGNKIDRPEA 141 (198)
T ss_dssp EEEEEEECC----CCGGGGGGGGCSEEEEEEETTCGG---GHH----HHHHHHHHHHTCGGGTTSC-EEEEEECTTSTTC
T ss_pred EEEEEECCCcHhhHHHHHHHHhcCCEEEEEEECCCHH---HHH----HHHHHHHHHHhCcccCCCc-EEEEEECCCcccc
Confidence 9999999999988776777788999999999998752 121 1122222221 24677 8999999999751
Q ss_pred chhhHHHHHHHHhHHHhhcC---------CC---CCCCcEEEeecccCCCccc
Q 004209 495 SKDRFDSIKVQLGTFLRSCG---------FK---DASLTWIPLSALENQNLVT 535 (768)
Q Consensus 495 s~e~~~~i~~el~~~lk~~g---------~~---~~~i~~IpVSA~tG~gI~e 535 (768)
...+++. ..+.... +. ...++++++||++|+|+.+
T Consensus 142 --~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~ 188 (198)
T 1f6b_A 142 --ISEERLR----EMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGE 188 (198)
T ss_dssp --CCHHHHH----HHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHH
T ss_pred --CCHHHHH----HHhCcccccccccccccccccCceEEEEEEECCCCCCHHH
Confidence 1222222 2222111 11 1346799999999999976
No 122
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.64 E-value=9.8e-16 Score=150.55 Aligned_cols=150 Identities=18% Similarity=0.142 Sum_probs=87.4
Q ss_pred CCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEee
Q 004209 336 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 415 (768)
Q Consensus 336 ~~~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~ 415 (768)
..++.++|+++|..|+|||||+++|++.... . .. .+++.......+..
T Consensus 17 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~--~-----------------------------~~-~~t~~~~~~~~~~~ 64 (190)
T 3con_A 17 QGMTEYKLVVVGAGGVGKSALTIQLIQNHFV--D-----------------------------EY-DPTIEDSYRKQVVI 64 (190)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSSCC--S-----------------------------CC-CTTCCEEEEEEEEE
T ss_pred cccceeEEEEECcCCCCHHHHHHHHHcCCCc--c-----------------------------cc-CCccceEEEEEEEE
Confidence 3456799999999999999999999953110 0 00 11111111222333
Q ss_pred CC--eEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH----cCCCeEEEEEecc
Q 004209 416 KN--YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS----FGVDQLIVAVNKM 489 (768)
Q Consensus 416 ~~--~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~----lgip~iIVVvNKm 489 (768)
.+ ..+.||||||+.+|...+...+..+|++|+|+|++... .+. .....+..+.. .++| ++||+||+
T Consensus 65 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~----~~~~~~~~i~~~~~~~~~p-~ilv~nK~ 136 (190)
T 3con_A 65 DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSK---SFA----DINLYREQIKRVKDSDDVP-MVLVGNKC 136 (190)
T ss_dssp TTEEEEEEEEECCC-----------CTTCSEEEEEEETTCHH---HHH----HHHHHHHHHHHHHTCSCCC-EEEEEECT
T ss_pred CCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEEEEECcCHH---HHH----HHHHHHHHHHHHhCCCCCe-EEEEEECC
Confidence 33 56899999999999888888899999999999998742 111 11222222222 3677 89999999
Q ss_pred cccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 490 DAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 490 Dlv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
|+... ... .+++..+.+..+ ++++++||++|.|+.+
T Consensus 137 Dl~~~-~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~ 172 (190)
T 3con_A 137 DLPTR-TVD----TKQAHELAKSYG-----IPFIETSAKTRQGVED 172 (190)
T ss_dssp TCSCC-CSC----HHHHHHHHHHHT-----CCEEECCTTTCTTHHH
T ss_pred cCCcc-cCC----HHHHHHHHHHcC-----CeEEEEeCCCCCCHHH
Confidence 98752 111 123333444444 4689999999999976
No 123
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.64 E-value=4.1e-16 Score=158.34 Aligned_cols=149 Identities=18% Similarity=0.174 Sum_probs=95.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC-
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN- 417 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~- 417 (768)
..++|+|+|++|+|||||+++|++..-. .+..+.++.+.....+..++
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~~~~~-------------------------------~~~~~t~~~~~~~~~~~~~~~ 60 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTKNEFN-------------------------------MDSKSTIGVEFATRTLEIEGK 60 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHHCCCC-------------------------------C------CCSEEEEEEEETTE
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCC-------------------------------CCCCCcccceeEEEEEEECCE
Confidence 4689999999999999999999953111 11112233333333444454
Q ss_pred -eEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHc---CCCeEEEEEecccccc
Q 004209 418 -YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAVQ 493 (768)
Q Consensus 418 -~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~l---gip~iIVVvNKmDlv~ 493 (768)
..+.||||||+++|...+...+..+|++|+|+|++.+. .+. ...+.+..+... ++| ++||+||+|+..
T Consensus 61 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~~~---s~~----~~~~~l~~i~~~~~~~~p-iilv~nK~Dl~~ 132 (223)
T 3cpj_B 61 RIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSS---SYE----NCNHWLSELRENADDNVA-VGLIGNKSDLAH 132 (223)
T ss_dssp EEEEEEECCTTTTTTTCCCGGGTTTCCEEEEEEC-CCHH---HHH----HHHHHHHHHHHHCC--CE-EEEEECCGGGGG
T ss_pred EEEEEEEECCCccchhhhHHHHhccCCEEEEEEeCCCHH---HHH----HHHHHHHHHHHhCCCCCe-EEEEEECccccc
Confidence 68899999999998877778888999999999998752 111 122223333332 565 899999999975
Q ss_pred cchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 494 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 494 ~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
...-.. .+...+.+..+ ++++++||++|.|+.+
T Consensus 133 ~~~v~~----~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~ 165 (223)
T 3cpj_B 133 LRAVPT----EESKTFAQENQ-----LLFTETSALNSENVDK 165 (223)
T ss_dssp GCCSCH----HHHHHHHHHTT-----CEEEECCCC-CCCHHH
T ss_pred ccccCH----HHHHHHHHHcC-----CEEEEEeCCCCCCHHH
Confidence 211111 22233333333 5789999999999976
No 124
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.64 E-value=2.8e-16 Score=156.72 Aligned_cols=154 Identities=18% Similarity=0.152 Sum_probs=95.3
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEE-EEEEEEeeC
Q 004209 338 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMT-VAVAYFDSK 416 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid-~~~~~~~~~ 416 (768)
.+.++|+++|.+|+|||||+++|++..-. ....+.+... .....+...
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~-------------------------------~~~~~t~~~~~~~~~~~~~~ 70 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFS-------------------------------EGYDPTVENTYSKIVTLGKD 70 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCC-------------------------------SCCCCCSEEEEEEEEC----
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCCC-------------------------------CCCCCccceEEEEEEEECCE
Confidence 45799999999999999999999952110 0001111111 222233345
Q ss_pred CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccch
Q 004209 417 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 496 (768)
Q Consensus 417 ~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~ 496 (768)
...+.||||||+++|...+...+..+|++|+|+|++... .++.+..+..+........++| +|||+||+|+.....
T Consensus 71 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~ 146 (201)
T 3oes_A 71 EFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLH---SFQVIESLYQKLHEGHGKTRVP-VVLVGNKADLSPERE 146 (201)
T ss_dssp CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEEEETTCHH---HHHHHHHHHHHHHC-----CCC-EEEEEECTTCGGGCC
T ss_pred EEEEEEEECCCccchHHHHHHHHhcCCEEEEEEeCCCHH---HHHHHHHHHHHHHHhcCCCCCC-EEEEEECccCccccc
Confidence 678999999999998877778888999999999998742 2222111122221222223667 899999999975322
Q ss_pred hhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 497 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 497 e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
... .+...+.+..+ ++++++||++|.|+.+
T Consensus 147 v~~----~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~ 176 (201)
T 3oes_A 147 VQA----VEGKKLAESWG-----ATFMESSARENQLTQG 176 (201)
T ss_dssp SCH----HHHHHHHHHHT-----CEEEECCTTCHHHHHH
T ss_pred cCH----HHHHHHHHHhC-----CeEEEEeCCCCCCHHH
Confidence 111 12233333344 4789999999999976
No 125
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.64 E-value=1.4e-16 Score=178.35 Aligned_cols=145 Identities=19% Similarity=0.242 Sum_probs=104.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCe
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 418 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~ 418 (768)
..++|+|+|++|+|||||+++|++.... ..+..+|+|++.....+...+.
T Consensus 33 ~~~kI~IvG~~~vGKSTLin~L~~~~~~------------------------------~~~~~~gtT~d~~~~~~~~~~~ 82 (423)
T 3qq5_A 33 FRRYIVVAGRRNVGKSSFMNALVGQNVS------------------------------IVSDYAGTTTDPVYKSMELHPI 82 (423)
T ss_dssp CCEEEEEECSCSTTTTTTTTSSCC-------------------------------------------CCCCEEEEEETTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHcCCCC------------------------------ccCCCCCeeeeeEEEEEEECCC
Confidence 4689999999999999999999842111 1234477888887777777665
Q ss_pred -EEEEEeCCCccch-------HHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEeccc
Q 004209 419 -HVVVLDSPGHKDF-------VPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 490 (768)
Q Consensus 419 -~i~lIDTPGh~~f-------~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmD 490 (768)
.+.||||||+.+| +..+...+..+|++|+|+|+.. ..++.+.+..+...++| +|+|+||+|
T Consensus 83 ~~l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~~~----------~~~~~~~l~~l~~~~~p-iIvV~NK~D 151 (423)
T 3qq5_A 83 GPVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSAP----------TPYEDDVVNLFKEMEIP-FVVVVNKID 151 (423)
T ss_dssp EEEEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSSSC----------CHHHHHHHHHHHHTTCC-EEEECCCCT
T ss_pred CeEEEEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeCCC----------hHHHHHHHHHHHhcCCC-EEEEEeCcC
Confidence 8999999999875 4456777889999999999932 45788888889999998 899999999
Q ss_pred ccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 491 AVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 491 lv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
+...... +..+++ .+.++ ++++++||++|.|+.+
T Consensus 152 l~~~~~~---~~~~~l---~~~~g-----~~v~~vSAktg~gI~e 185 (423)
T 3qq5_A 152 VLGEKAE---ELKGLY---ESRYE-----AKVLLVSALQKKGFDD 185 (423)
T ss_dssp TTTCCCT---HHHHHS---SCCTT-----CCCCCCSSCCTTSTTT
T ss_pred CCCccHH---HHHHHH---HHHcC-----CCEEEEECCCCCCHHH
Confidence 9864322 122222 22222 4789999999999976
No 126
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.64 E-value=6.6e-17 Score=159.06 Aligned_cols=149 Identities=21% Similarity=0.242 Sum_probs=96.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCe
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 418 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~ 418 (768)
+.++|+++|++|+|||||+++|+... .. . .. + |+......+..++.
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~--~~-------------------------~---~~--~--t~~~~~~~~~~~~~ 66 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGD--VV-------------------------T---TV--P--TVGVNLETLQYKNI 66 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSC--CE-------------------------E---EC--S--STTCCEEEEEETTE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCC--CC-------------------------C---cC--C--CCceEEEEEEECCE
Confidence 56899999999999999999997311 00 0 00 1 11122233445788
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHH-HHHH---cCCCeEEEEEeccccccc
Q 004209 419 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQ-LIRS---FGVDQLIVAVNKMDAVQY 494 (768)
Q Consensus 419 ~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~-ll~~---lgip~iIVVvNKmDlv~~ 494 (768)
.+.||||||+++|...+...+..+|++|+|+|++++. .+. ...+.+. ++.. .++| +++|+||+|+.+.
T Consensus 67 ~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~~----~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~ 138 (189)
T 2x77_A 67 SFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRD---RMG----VAKHELYALLDEDELRKSL-LLIFANKQDLPDA 138 (189)
T ss_dssp EEEEEEECCSSSSCCCCSSSSTTCCEEEEEEETTCCT---THH----HHHHHHHHHHTCSTTTTCE-EEEEEECTTSTTC
T ss_pred EEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeCCCHH---HHH----HHHHHHHHHHhhhhcCCCe-EEEEEECCCCcCC
Confidence 9999999999988776667788999999999998752 111 1222222 2221 2566 8999999999753
Q ss_pred chhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 495 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 495 s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
...+++...+... .+....++++++||++|.|+.+
T Consensus 139 --~~~~~~~~~~~~~----~~~~~~~~~~~~Sa~~~~gi~~ 173 (189)
T 2x77_A 139 --ASEAEIAEQLGVS----SIMNRTWTIVKSSSKTGDGLVE 173 (189)
T ss_dssp --CCHHHHHHHTTGG----GCCSSCEEEEECCTTTCTTHHH
T ss_pred --CCHHHHHHHhChh----hccCCceEEEEccCCCccCHHH
Confidence 2223333333211 1122346899999999999976
No 127
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.64 E-value=1.7e-15 Score=153.02 Aligned_cols=155 Identities=16% Similarity=0.158 Sum_probs=83.2
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeC
Q 004209 337 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 416 (768)
Q Consensus 337 ~~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~ 416 (768)
..+.++|+++|.+|+|||||+++|++.. .. ....+ ++.+.....+..+
T Consensus 31 ~~~~~ki~vvG~~~vGKSsli~~l~~~~--~~-----------------------------~~~~~-t~~~~~~~~~~~~ 78 (214)
T 2j1l_A 31 GVRSVKVVLVGDGGCGKTSLLMVFADGA--FP-----------------------------ESYTP-TVFERYMVNLQVK 78 (214)
T ss_dssp -CCEEEEEEEECTTSSHHHHHHHHHC--------------------------------------CC-CCCEEEEEEEEET
T ss_pred CcceEEEEEECcCCCCHHHHHHHHHcCC--CC-----------------------------CCCCC-ccceeEEEEEEEC
Confidence 3457899999999999999999998421 00 00001 1111111222333
Q ss_pred --CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH--cCCCeEEEEEeccccc
Q 004209 417 --NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAV 492 (768)
Q Consensus 417 --~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~--lgip~iIVVvNKmDlv 492 (768)
...+.||||||+++|...+...+..+|++|+|+|++... .|..+ ....+..+.. -++| +|||+||+|+.
T Consensus 79 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~---~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 151 (214)
T 2j1l_A 79 GKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPN---SFDNI---FNRWYPEVNHFCKKVP-IIVVGCKTDLR 151 (214)
T ss_dssp TEEEEEEEEEC---------------CEEEEEEEEETTCHH---HHHHH---HHTHHHHHHHHCSSCC-EEEEEECGGGG
T ss_pred CEEEEEEEEECCCchhhhHHHHHHhccCCEEEEEEECcCHH---HHHHH---HHHHHHHHHHhCCCCC-EEEEEEChhhh
Confidence 347899999999999888888889999999999998742 11111 0112222222 2666 89999999998
Q ss_pred ccchhhHHHH---------HHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 493 QYSKDRFDSI---------KVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 493 ~~s~e~~~~i---------~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
.. ....+.+ ..+...+.+.+++ .+++++||++|.|+.+
T Consensus 152 ~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~SA~~g~gi~e 198 (214)
T 2j1l_A 152 KD-KSLVNKLRRNGLEPVTYHRGQEMARSVGA----VAYLECSARLHDNVHA 198 (214)
T ss_dssp SC-HHHHHHHHHTTCCCCCHHHHHHHHHHTTC----SEEEECBTTTTBSHHH
T ss_pred cc-chhhhhhcccccCcccHHHHHHHHHhcCC----CEEEEecCCCCCCHHH
Confidence 53 1111111 1233444444442 3789999999999976
No 128
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.63 E-value=6.5e-16 Score=152.77 Aligned_cols=153 Identities=14% Similarity=0.171 Sum_probs=97.7
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeC-
Q 004209 338 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK- 416 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~- 416 (768)
+..++|+++|.+|+|||||+++|++..- . ....+.+..... ..+...
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~--~-----------------------------~~~~~t~~~~~~-~~~~~~~ 68 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKGEI--P-----------------------------TAYVPTVFENFS-HVMKYKN 68 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCC--C-----------------------------SSCCCCSEEEEE-EEEEETT
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcCCC--C-----------------------------CccCCeeeeeeE-EEEEECC
Confidence 4568999999999999999999995310 0 000111111111 122333
Q ss_pred -CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHc--CCCeEEEEEecccccc
Q 004209 417 -NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQ 493 (768)
Q Consensus 417 -~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~l--gip~iIVVvNKmDlv~ 493 (768)
...+.||||||+++|...+...+..+|++|+|+|++... .+.. .....+..+... ++| +|+|+||+|+.+
T Consensus 69 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~---~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~ 141 (194)
T 3reg_A 69 EEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRT---SFDN---ISTKWEPEIKHYIDTAK-TVLVGLKVDLRK 141 (194)
T ss_dssp EEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHH---HHHH---HHHTHHHHHHHHCTTSE-EEEEEECGGGCC
T ss_pred EEEEEEEEECCCcHHHHHHhHhhccCCcEEEEEEECCCHH---HHHH---HHHHHHHHHHHhCCCCC-EEEEEEChhhcc
Confidence 355799999999999888888899999999999998742 1111 012222233332 455 899999999975
Q ss_pred cchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 494 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 494 ~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
.... ....++...+.+.+++. .++++||++|.|+.+
T Consensus 142 ~~~~--~~~~~~~~~~~~~~~~~----~~~~~Sa~~~~gi~~ 177 (194)
T 3reg_A 142 DGSD--DVTKQEGDDLCQKLGCV----AYIEASSVAKIGLNE 177 (194)
T ss_dssp TTTT--CCCHHHHHHHHHHHTCS----CEEECBTTTTBSHHH
T ss_pred CCCC--cccHHHHHHHHHhcCCC----EEEEeecCCCCCHHH
Confidence 2111 11123344455555542 389999999999976
No 129
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.63 E-value=4.5e-16 Score=162.07 Aligned_cols=157 Identities=17% Similarity=0.209 Sum_probs=99.9
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC
Q 004209 338 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 417 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~ 417 (768)
...++|+|+|++|+|||||+++|++....+.. ....++|.+.....+.+.+
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~-----------------------------~~~~~~t~~~~~~~~~~~~ 70 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESK-----------------------------LGSQTLTKTCSKSQGSWGN 70 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCC-----------------------------TTSCCCCCSCEEEEEEETT
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccC-----------------------------CCCCceeeeeEEEEEEeCC
Confidence 45689999999999999999999953221110 0112256666666677789
Q ss_pred eEEEEEeCCCccch-----------HHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHc-----CCCe
Q 004209 418 YHVVVLDSPGHKDF-----------VPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF-----GVDQ 481 (768)
Q Consensus 418 ~~i~lIDTPGh~~f-----------~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~l-----gip~ 481 (768)
..+.||||||+.++ ...+...+..+|++|+|+|++. + ..+....+..+... +.|
T Consensus 71 ~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~--~-------~~~~~~~~~~l~~~~~~~~~~~- 140 (260)
T 2xtp_A 71 REIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGR--Y-------TSQDQQAAQRVKEIFGEDAMGH- 140 (260)
T ss_dssp EEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTC--C-------CHHHHHHHHHHHHHHCGGGGGG-
T ss_pred CEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCC--C-------CHHHHHHHHHHHHHhCchhhcc-
Confidence 99999999998764 3333446788999999999985 1 23455555555554 556
Q ss_pred EEEEEe-cccccccchhhHHHHH----HHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 482 LIVAVN-KMDAVQYSKDRFDSIK----VQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 482 iIVVvN-KmDlv~~s~e~~~~i~----~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
.|+|+| |+|+.+.. ....+. .++..+++.++.....+..+++||++|.|+.+
T Consensus 141 ~i~vv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~ 197 (260)
T 2xtp_A 141 TIVLFTHKEDLNGGS--LMDYMHDSDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKE 197 (260)
T ss_dssp EEEEEECGGGGTTCC--HHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHH
T ss_pred EEEEEEcccccCCcc--HHHHHHhcchHHHHHHHHHhCCeEEEecCcccccccHHHHHH
Confidence 566666 99998521 111111 22333444444210001117899999999976
No 130
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.63 E-value=6e-16 Score=163.65 Aligned_cols=143 Identities=17% Similarity=0.186 Sum_probs=97.6
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCeE
Q 004209 340 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 419 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~~ 419 (768)
.++|+++|++|+|||||+++|++... .....+|+|++.....+.. +..
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~-------------------------------~v~~~pg~tv~~~~~~~~~-~~~ 50 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQ-------------------------------RVGNWPGVTVERKSGLVKK-NKD 50 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCC-------------------------------CCCSSSCCCCSCEEEECTT-CTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCC-------------------------------cccCCCCCcEEEEEEEEec-CCe
Confidence 47899999999999999999994210 0111257888766666666 778
Q ss_pred EEEEeCCCccchH------HHHHHhc--ccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccc
Q 004209 420 VVVLDSPGHKDFV------PNMISGA--TQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDA 491 (768)
Q Consensus 420 i~lIDTPGh~~f~------~~~i~g~--~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDl 491 (768)
+.||||||+..|. ......+ ..+|++|+|+|++.. .........+..+++| +|+|+||+|+
T Consensus 51 l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~----------e~~~~~~~~l~~~~~p-~ilv~NK~Dl 119 (272)
T 3b1v_A 51 LEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNL----------ERNLYLTTQLIETGIP-VTIALNMIDV 119 (272)
T ss_dssp EEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGH----------HHHHHHHHHHHHTCSC-EEEEEECHHH
T ss_pred EEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCch----------HhHHHHHHHHHhcCCC-EEEEEEChhh
Confidence 9999999988763 1122223 369999999999862 1223333445567898 8999999998
Q ss_pred cccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 492 VQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 492 v~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
.... ... .....+.+.++ ++++++||++|.|+.+
T Consensus 120 ~~~~--~~~---~~~~~l~~~lg-----~~vi~~SA~~g~gi~e 153 (272)
T 3b1v_A 120 LDGQ--GKK---INVDKLSYHLG-----VPVVATSALKQTGVDQ 153 (272)
T ss_dssp HHHT--TCC---CCHHHHHHHHT-----SCEEECBTTTTBSHHH
T ss_pred CCcC--CcH---HHHHHHHHHcC-----CCEEEEEccCCCCHHH
Confidence 7421 111 11222223334 4789999999999976
No 131
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.63 E-value=8.8e-16 Score=155.36 Aligned_cols=153 Identities=21% Similarity=0.208 Sum_probs=104.0
Q ss_pred CCCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEe
Q 004209 335 GDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD 414 (768)
Q Consensus 335 ~~~~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~ 414 (768)
......++|+++|.+|+|||||+++|+...- ........|+|.......+.
T Consensus 10 ~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~-----------------------------~~~~~~t~~~~~~~~~~~~~ 60 (221)
T 3gj0_A 10 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEF-----------------------------EKKYVATLGVEVHPLVFHTN 60 (221)
T ss_dssp TCCCCEEEEEEEECTTSSHHHHHTTBHHHHH-----------------------------TCEEETTTTEEEEEEEEEET
T ss_pred CCcccceEEEEECCCCCCHHHHHHHHHcCCC-----------------------------CCCCCCccceeEEEEEEEEC
Confidence 3445679999999999999999999663210 00112235667766666665
Q ss_pred eCCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH-c-CCCeEEEEEeccccc
Q 004209 415 SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-F-GVDQLIVAVNKMDAV 492 (768)
Q Consensus 415 ~~~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~-l-gip~iIVVvNKmDlv 492 (768)
.....+.||||||+++|...+...+..+|++|+|+|++... .+.. ....+..+.. . ++| +|+|+||+|+.
T Consensus 61 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~----~~~~~~~~~~~~~~~p-~ilv~nK~Dl~ 132 (221)
T 3gj0_A 61 RGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRV---TYKN----VPNWHRDLVRVCENIP-IVLCGNKVDIK 132 (221)
T ss_dssp TEEEEEEEEEECSGGGTSCCCHHHHTTCCEEEEEEETTCHH---HHHT----HHHHHHHHHHHSTTCC-EEEEEECTTSS
T ss_pred CEEEEEEEEeCCChHHHhHHHHHHHhcCCEEEEEEECCCHH---HHHH----HHHHHHHHHHhCCCCC-EEEEEECCccc
Confidence 56678999999999998777777888999999999999752 1211 1122222222 2 667 89999999997
Q ss_pred ccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 493 QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 493 ~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
+... ..+...+.+..+ ++++++||++|.|+.+
T Consensus 133 ~~~~------~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~ 164 (221)
T 3gj0_A 133 DRKV------KAKSIVFHRKKN-----LQYYDISAKSNYNFEK 164 (221)
T ss_dssp SCSS------CGGGCCHHHHHT-----CEEEECBGGGTBTTTH
T ss_pred cccc------cHHHHHHHHHcC-----CEEEEEeCCCCCCHHH
Confidence 5211 112223333333 4789999999999976
No 132
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.63 E-value=3e-15 Score=147.78 Aligned_cols=149 Identities=18% Similarity=0.132 Sum_probs=95.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCe
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 418 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~ 418 (768)
..++|+++|.+|+|||||+++|++..-. .. .....+.+.. ....+.....
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~--~~---------------------------~~~t~~~~~~-~~~~~~~~~~ 56 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFR--DT---------------------------YIPTIEDTYR-QVISCDKSVC 56 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCCC--CT---------------------------TSCCCCEEEE-EEEEETTEEE
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCCC--Cc---------------------------ccCcccccee-EEEEECCEEE
Confidence 4689999999999999999999952110 00 0000111111 1112222345
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH-----cCCCeEEEEEecccccc
Q 004209 419 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-----FGVDQLIVAVNKMDAVQ 493 (768)
Q Consensus 419 ~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~-----lgip~iIVVvNKmDlv~ 493 (768)
.+.||||||+.+|...+...+..+|++|+|+|++... .+. .....+..+.. .++| +|+|+||+|+..
T Consensus 57 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~----~~~~~~~~i~~~~~~~~~~p-iilv~nK~Dl~~ 128 (199)
T 2gf0_A 57 TLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQ---SLE----ELGPIYKLIVQIKGSVEDIP-VMLVGNKCDETQ 128 (199)
T ss_dssp EEEEEECCGGGSCHHHHHHHHHHCSEEEEEEETTCHH---HHH----TTHHHHHHHHHHHSCGGGSC-EEEEEECTTCSS
T ss_pred EEEEEeCCChHHhHHHHHHhhccCCEEEEEEECcCHH---HHH----HHHHHHHHHHHHhcCCCCCC-EEEEEECccCCc
Confidence 7899999999999888888889999999999998742 121 12222222222 2567 899999999975
Q ss_pred cchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 494 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 494 ~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
. .... .+...+...++ ++++++||++|.|+.+
T Consensus 129 ~-~~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~ 160 (199)
T 2gf0_A 129 R-EVDT----REAQAVAQEWK-----CAFMETSAKMNYNVKE 160 (199)
T ss_dssp C-SSCH----HHHHHHHHHHT-----CEEEECBTTTTBSHHH
T ss_pred c-ccCH----HHHHHHHHHhC-----CeEEEEecCCCCCHHH
Confidence 2 1111 12223333334 4789999999999976
No 133
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.62 E-value=2.1e-15 Score=149.58 Aligned_cols=152 Identities=20% Similarity=0.183 Sum_probs=93.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEE-EEEEEeeCC
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTV-AVAYFDSKN 417 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~-~~~~~~~~~ 417 (768)
..++|+++|.+|+|||||+++|++..-. .+..+.+.... ....+....
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~-------------------------------~~~~~t~~~~~~~~~~~~~~~ 75 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRFI-------------------------------WEYDPTLESTYRHQATIDDEV 75 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCCC-------------------------------SCCCTTCCEEEEEEEEETTEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCC-------------------------------cccCCCCCceEEEEEEECCEE
Confidence 4689999999999999999999953110 00011111111 112222234
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccchh
Q 004209 418 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 497 (768)
Q Consensus 418 ~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~e 497 (768)
..+.||||||+.+ ...+...+..+|++|+|+|++... .++.+.....+........++| +++|+||+|+.+....
T Consensus 76 ~~~~l~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~~~---s~~~~~~~~~~i~~~~~~~~~p-iilv~NK~Dl~~~~~v 150 (196)
T 2atv_A 76 VSMEILDTAGQED-TIQREGHMRWGEGFVLVYDITDRG---SFEEVLPLKNILDEIKKPKNVT-LILVGNKADLDHSRQV 150 (196)
T ss_dssp EEEEEEECCCCCC-CHHHHHHHHHCSEEEEEEETTCHH---HHHTHHHHHHHHHHHHTTSCCC-EEEEEECGGGGGGCCS
T ss_pred EEEEEEECCCCCc-ccchhhhhccCCEEEEEEECcCHH---HHHHHHHHHHHHHHhhCCCCCc-EEEEEECccccccccc
Confidence 6789999999988 555566778899999999998742 2222111112222222224677 8999999999753111
Q ss_pred hHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCC-Cccc
Q 004209 498 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQ-NLVT 535 (768)
Q Consensus 498 ~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~-gI~e 535 (768)
.. .+...+.+..+ ++++++||++|. |+.+
T Consensus 151 ~~----~~~~~~~~~~~-----~~~~~~Sa~~g~~gi~~ 180 (196)
T 2atv_A 151 ST----EEGEKLATELA-----CAFYECSACTGEGNITE 180 (196)
T ss_dssp CH----HHHHHHHHHHT-----SEEEECCTTTCTTCHHH
T ss_pred CH----HHHHHHHHHhC-----CeEEEECCCcCCcCHHH
Confidence 11 22223333333 578999999999 9976
No 134
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.62 E-value=5.6e-16 Score=153.86 Aligned_cols=151 Identities=19% Similarity=0.171 Sum_probs=72.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeC--
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK-- 416 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~-- 416 (768)
..++|+++|+.|+|||||+++|++....+. .+..+.+.++.....+..+
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~-----------------------------~~~~~t~~~~~~~~~~~~~~~ 69 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFL-----------------------------KDYAMTSGVEVVVAPVTIPDT 69 (208)
T ss_dssp EEEEEEEC---------------------------------------------------------------CEEEECTTS
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCccc-----------------------------CCCCCccceEEEEEEEEECCc
Confidence 458999999999999999999984311110 0011112223333444444
Q ss_pred --CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH------cCCCeEEEEEec
Q 004209 417 --NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS------FGVDQLIVAVNK 488 (768)
Q Consensus 417 --~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~------lgip~iIVVvNK 488 (768)
...+.||||||+.+|...+...+..+|++|+|+|++.+. .+ ......+..+.. .++| ++||+||
T Consensus 70 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~----~~~~~~~~~i~~~~~~~~~~~p-iilv~nK 141 (208)
T 2yc2_C 70 TVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSME---SF----ESCKAWFELLKSARPDRERPLR-AVLVANK 141 (208)
T ss_dssp SEEEEEEEEETTTTHHHHHHHSTTCCCCCEEEEEEETTCHH---HH----HHHHHHHHHHHHHCSCTTSCCE-EEEEEEC
T ss_pred ccEEEEEEEECCCcHHHHHHHHHHHhhCcEEEEEEECCCHH---HH----HHHHHHHHHHHHhhcccccCCc-EEEEEEC
Confidence 468999999999999988888899999999999998752 11 122233333333 3566 8999999
Q ss_pred ccccc-cchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeeccc-CCCccc
Q 004209 489 MDAVQ-YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALE-NQNLVT 535 (768)
Q Consensus 489 mDlv~-~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~t-G~gI~e 535 (768)
+|+.+ ...-. .+++..+++.++ ++++++||++ |.|+.+
T Consensus 142 ~Dl~~~~~~v~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~gi~~ 181 (208)
T 2yc2_C 142 TDLPPQRHQVR----LDMAQDWATTNT-----LDFFDVSANPPGKDADA 181 (208)
T ss_dssp C-------CCC----HHHHHHHHHHTT-----CEEEECCC-------CH
T ss_pred cccchhhccCC----HHHHHHHHHHcC-----CEEEEeccCCCCcCHHH
Confidence 99975 21111 123344444444 5789999999 999976
No 135
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.62 E-value=3.6e-16 Score=169.62 Aligned_cols=151 Identities=19% Similarity=0.188 Sum_probs=98.7
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC
Q 004209 338 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 417 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~ 417 (768)
+..++|+|+|++|+|||||+++|++.. + .. ...|+......+...+
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~----------------------~-----~~-------~~pT~~~~~~~~~~~~ 208 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGE----------------------I-----VT-------TIPTIGFNVETVEYKN 208 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSC----------------------C-----EE-------EEEETTEEEEEEEETT
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCC----------------------C-----CC-------cccccceEEEEEecCc
Confidence 356899999999999999999997321 0 00 0124445556677788
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHc---CCCeEEEEEeccccccc
Q 004209 418 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAVQY 494 (768)
Q Consensus 418 ~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~l---gip~iIVVvNKmDlv~~ 494 (768)
..+.||||||+++|...+...+..+|++|+|+|++... +|.. .......++... ++| +|||+||+|+.+.
T Consensus 209 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~~---s~~~---~~~~~~~~~~~~~~~~~p-iilV~NK~Dl~~~ 281 (329)
T 3o47_A 209 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRE---RVNE---AREELMRMLAEDELRDAV-LLVFANKQDLPNA 281 (329)
T ss_dssp EEEEEEECC-----CCSHHHHHTTEEEEEEEEETTCSS---SHHH---HHHHHHHHHTCGGGTTCE-EEEEEECTTSTTC
T ss_pred EEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCchH---HHHH---HHHHHHHHHhhhccCCCe-EEEEEECccCCcc
Confidence 99999999999999888888889999999999998642 2221 222222233222 666 8999999999853
Q ss_pred chhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 495 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 495 s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
...+++...+.. .......++++++||++|.||.+
T Consensus 282 --~~~~~i~~~~~~----~~~~~~~~~~~~vSAk~g~gi~e 316 (329)
T 3o47_A 282 --MNAAEITDKLGL----HSLRHRNWYIQATCATSGDGLYE 316 (329)
T ss_dssp --CCHHHHHHHHTC----TTCCSSCEEEEECBTTTTBTHHH
T ss_pred --cCHHHHHHHhch----hhhhcCCCEEEEEECCCCcCHHH
Confidence 222333333321 12223456899999999999976
No 136
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.62 E-value=1.8e-15 Score=151.01 Aligned_cols=154 Identities=14% Similarity=0.139 Sum_probs=97.9
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeC-
Q 004209 338 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK- 416 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~- 416 (768)
...++|+++|.+|+|||||+++|++.... ....+.++.+.. ..+..+
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~-------------------------------~~~~~t~~~~~~-~~~~~~~ 70 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFP-------------------------------EVYVPTVFENYI-ADIEVDG 70 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCC-------------------------------SSCCCSSCCCCE-EEEEETT
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCC-------------------------------cccCCcccceEE-EEEEECC
Confidence 34689999999999999999999953110 000111111111 112233
Q ss_pred -CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHc--CCCeEEEEEecccccc
Q 004209 417 -NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQ 493 (768)
Q Consensus 417 -~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~l--gip~iIVVvNKmDlv~ 493 (768)
...+.||||||+++|...+...+..+|++|+|+|++... ++. ......+..+... ++| +++|+||+|+..
T Consensus 71 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~ 143 (201)
T 2gco_A 71 KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPD---SLE---NIPEKWTPEVKHFCPNVP-IILVGNKKDLRQ 143 (201)
T ss_dssp EEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHH---HHH---HHHHTHHHHHHHHSTTCC-EEEEEECGGGTT
T ss_pred EEEEEEEEECCCchhHHHHHHHhcCCCCEEEEEEECCCHH---HHH---HHHHHHHHHHHHhCCCCC-EEEEEecHHhhc
Confidence 357899999999998877777888999999999998742 111 1112233334433 677 899999999985
Q ss_pred cchhhHHHH---------HHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 494 YSKDRFDSI---------KVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 494 ~s~e~~~~i---------~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
. ....+.+ .++...+.+..++ .+++++||++|.|+.+
T Consensus 144 ~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~SA~~g~gi~~ 189 (201)
T 2gco_A 144 D-EHTRRELAKMKQEPVRSEEGRDMANRISA----FGYLECSAKTKEGVRE 189 (201)
T ss_dssp C-HHHHHHHHTTTCCCCCHHHHHHHHHHTTC----SEEEECCTTTCTTHHH
T ss_pred C-ccchhhhcccccCcCCHHHHHHHHHhCCC----cEEEEeeCCCCCCHHH
Confidence 3 1111111 1223334444442 3789999999999976
No 137
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.62 E-value=2.6e-15 Score=153.42 Aligned_cols=154 Identities=16% Similarity=0.171 Sum_probs=97.6
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEee-
Q 004209 337 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS- 415 (768)
Q Consensus 337 ~~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~- 415 (768)
+++.+||+|+|..++|||||+++|+.. . ...+..+.+..+.....+..
T Consensus 10 P~k~~KivlvGd~~VGKTsLi~r~~~~--~-----------------------------f~~~~~~Tig~d~~~k~~~~~ 58 (216)
T 4dkx_A 10 PLRKFKLVFLGEQSVGKTSLITRFMYD--S-----------------------------FDNTYQATIGIDFLSKTMYLE 58 (216)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHS--C-----------------------------CC----------CEEEEEECS
T ss_pred CCCcEEEEEECcCCcCHHHHHHHHHhC--C-----------------------------CCCCcCCccceEEEEEEEEec
Confidence 345689999999999999999999842 1 11111233333333333333
Q ss_pred -CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEeccccccc
Q 004209 416 -KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 494 (768)
Q Consensus 416 -~~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~ 494 (768)
....+.||||+|+++|.......++.+|++|+|+|.+.. .+|+.+..+.. .+.....-++| +|||.||+|+.+.
T Consensus 59 ~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~~~---~Sf~~i~~~~~-~i~~~~~~~~p-iilVgNK~Dl~~~ 133 (216)
T 4dkx_A 59 DRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNV---NSFQQTTKWID-DVRTERGSDVI-IMLVGNKTDLADK 133 (216)
T ss_dssp SCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEEEEETTCH---HHHHTHHHHHH-HHHHHHTTSSE-EEEEEECTTCGGG
T ss_pred ceEEEEEEEECCCchhhhhHHHHHhccccEEEEEeecchh---HHHHHHHHHHH-HHHHhcCCCCe-EEEEeeccchHhc
Confidence 345788999999999988888889999999999999874 33443322222 22222223566 8999999998752
Q ss_pred chhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 495 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 495 s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
..-. .++...+.+.++ ++|+.+||++|.||.+
T Consensus 134 r~V~----~~e~~~~a~~~~-----~~~~e~SAktg~nV~e 165 (216)
T 4dkx_A 134 RQVS----IEEGERKAKELN-----VMFIETSAKAGYNVKQ 165 (216)
T ss_dssp CCSC----HHHHHHHHHHHT-----CEEEEEBTTTTBSHHH
T ss_pred Cccc----HHHHhhHHHHhC-----CeeEEEeCCCCcCHHH
Confidence 1111 123334444544 4789999999999976
No 138
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.61 E-value=2.2e-15 Score=148.74 Aligned_cols=152 Identities=14% Similarity=0.159 Sum_probs=97.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC-
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN- 417 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~- 417 (768)
..++|+++|+.|+|||||+++|++.. +.. ...+ ++.+.....+..++
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~--~~~-----------------------------~~~~-t~~~~~~~~~~~~~~ 64 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDA--FPE-----------------------------EYVP-TVFDHYAVSVTVGGK 64 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSS--CCC-----------------------------SCCC-SSCCCEEEEEESSSC
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCC--CCC-----------------------------CCCC-cccceeEEEEEECCE
Confidence 45899999999999999999999531 100 0001 01111112233333
Q ss_pred -eEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhH-HHHHHHHHc--CCCeEEEEEecccccc
Q 004209 418 -YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTR-EHAQLIRSF--GVDQLIVAVNKMDAVQ 493 (768)
Q Consensus 418 -~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~-e~l~ll~~l--gip~iIVVvNKmDlv~ 493 (768)
..+.||||||+++|...+...+..+|++|+|+|++... .|. ... ..+..+... ++| +++|+||+|+.+
T Consensus 65 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~----~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~ 136 (194)
T 2atx_A 65 QYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPA---SFQ----NVKEEWVPELKEYAPNVP-FLLIGTQIDLRD 136 (194)
T ss_dssp EEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHH---HHH----HHHHTHHHHHHHHSTTCC-EEEEEECTTSTT
T ss_pred EEEEEEEECCCCcchhHHHHHhcCCCCEEEEEEECCCHH---HHH----HHHHHHHHHHHHhCCCCC-EEEEEEChhhcc
Confidence 67899999999999887788889999999999998742 111 111 223333333 677 899999999975
Q ss_pred cchhhHHH---------HHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 494 YSKDRFDS---------IKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 494 ~s~e~~~~---------i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
.. ...+. ..++...+.+..++ .+++++||++|.|+.+
T Consensus 137 ~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~Sa~~g~gi~~ 182 (194)
T 2atx_A 137 DP-KTLARLNDMKEKPICVEQGQKLAKEIGA----CCYVECSALTQKGLKT 182 (194)
T ss_dssp CH-HHHHHHTTTTCCCCCHHHHHHHHHHHTC----SCEEECCTTTCTTHHH
T ss_pred cc-cchhhcccccCcccCHHHHHHHHHHcCC----cEEEEeeCCCCCCHHH
Confidence 21 11000 01233344444443 3789999999999976
No 139
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.61 E-value=1.4e-15 Score=172.73 Aligned_cols=148 Identities=18% Similarity=0.162 Sum_probs=86.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCe
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 418 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~ 418 (768)
..++|+|+|++|+|||||+|+|++....+ ....+|+|.+.....+..++.
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~------------------------------vs~~~gtT~d~~~~~i~~~g~ 281 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAI------------------------------VSHMPGTTRDYIEECFIHDKT 281 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------------------------------------CEEEEETTE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcc------------------------------cCCCCCceEEEEEEEEEECCe
Confidence 35789999999999999999998532111 122367888888888888999
Q ss_pred EEEEEeCCCccchHH--------HHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEeccc
Q 004209 419 HVVVLDSPGHKDFVP--------NMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 490 (768)
Q Consensus 419 ~i~lIDTPGh~~f~~--------~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmD 490 (768)
.+.||||||+.++.. .+...+..+|++|+|+|++.+... .+..+...++..+.-.++|+|+||+|
T Consensus 282 ~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~-------~~~~~~~~~l~~l~~~piIvV~NK~D 354 (476)
T 3gee_A 282 MFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLD-------DELTEIRELKAAHPAAKFLTVANKLD 354 (476)
T ss_dssp EEEEEC--------------------CCCSSCSEEEEEEETTTCSSG-------GGHHHHHHHHHHCTTSEEEEEEECTT
T ss_pred EEEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcch-------hhhHHHHHHHHhcCCCCEEEEEECcC
Confidence 999999999877542 234467889999999999986421 12223334444443334899999999
Q ss_pred ccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 491 AVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 491 lv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
+...... . .+++... ++ .+++++||++|+|+.+
T Consensus 355 l~~~~~~--~--~~~l~~~----~~----~~~i~vSAktg~GI~e 387 (476)
T 3gee_A 355 RAANADA--L--IRAIADG----TG----TEVIGISALNGDGIDT 387 (476)
T ss_dssp SCTTTHH--H--HHHHHHH----HT----SCEEECBTTTTBSHHH
T ss_pred CCCccch--h--HHHHHhc----CC----CceEEEEECCCCCHHH
Confidence 9863221 1 1222221 21 4689999999999976
No 140
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.61 E-value=3.5e-15 Score=149.60 Aligned_cols=153 Identities=14% Similarity=0.132 Sum_probs=95.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC-
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN- 417 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~- 417 (768)
..++|+++|.+|+|||||+++|++..-. ....+.++... ...+..++
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~-------------------------------~~~~~t~~~~~-~~~~~~~~~ 71 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSKDEFP-------------------------------EVYVPTVFENY-VADIEVDGK 71 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCC--------------------------------------CCEE-EEEEEETTE
T ss_pred cCcEEEEECcCCCCHHHHHHHHhcCCCC-------------------------------CcCCCcccceE-EEEEEECCE
Confidence 4589999999999999999999953110 00001111111 11123333
Q ss_pred -eEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHc--CCCeEEEEEeccccccc
Q 004209 418 -YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQY 494 (768)
Q Consensus 418 -~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~l--gip~iIVVvNKmDlv~~ 494 (768)
..+.||||||+++|...+...+..+|++|+|+|++... .+. ......+..+... ++| +++|+||+|+...
T Consensus 72 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~ 144 (207)
T 2fv8_A 72 QVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPD---SLE---NIPEKWVPEVKHFCPNVP-IILVANKKDLRSD 144 (207)
T ss_dssp EEEEEEEECTTCTTCTTTGGGGCTTCCEEEEEEETTCHH---HHH---HHHHTHHHHHHHHSTTCC-EEEEEECGGGGGC
T ss_pred EEEEEEEECCCcHHHHHHHHhhcCCCCEEEEEEECCCHH---HHH---HHHHHHHHHHHHhCCCCC-EEEEEEchhhhcc
Confidence 57899999999998877777888999999999998742 111 1112233333333 677 8999999999753
Q ss_pred chhhHHHHH---------HHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 495 SKDRFDSIK---------VQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 495 s~e~~~~i~---------~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
....+.+. .+...+....++ .+++++||++|.|+.+
T Consensus 145 -~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~SA~~g~gi~e 189 (207)
T 2fv8_A 145 -EHVRTELARMKQEPVRTDDGRAMAVRIQA----YDYLECSAKTKEGVRE 189 (207)
T ss_dssp -HHHHHHHHHTTCCCCCHHHHHHHHHHTTC----SEEEECCTTTCTTHHH
T ss_pred -ccchhhhhhcccCCCCHHHHHHHHHhcCC----CEEEEeeCCCCCCHHH
Confidence 11111111 122223333332 3789999999999976
No 141
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.61 E-value=9.5e-16 Score=154.40 Aligned_cols=155 Identities=17% Similarity=0.102 Sum_probs=94.0
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC
Q 004209 338 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 417 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~ 417 (768)
...++|+++|.+|+|||||+++|++..-. .......+.+............
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~-----------------------------~~~~~t~~~~~~~~~~~~~~~~ 59 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDGRFE-----------------------------KNYNATVGAVNHPVTFLDDQGN 59 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTCSTT-----------------------------CEEETTTTEEEEEEEEEBTTSC
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcCCCC-----------------------------CCCCCccceeeEEEEEEeCCCc
Confidence 35689999999999999999999842100 0001112222222221111112
Q ss_pred -eEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccch
Q 004209 418 -YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 496 (768)
Q Consensus 418 -~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~ 496 (768)
..+.||||||+++|.......+..+|++|+|+|++.+.. +..+. .....+......++| +++|+||+|+.+...
T Consensus 60 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~~~~-~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~ 134 (218)
T 4djt_A 60 VIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRIT---CQNLA-RWVKEFQAVVGNEAP-IVVCANKIDIKNRQK 134 (218)
T ss_dssp EEEEEEEEECSGGGTSCCCHHHHTTCSEEEEEEETTCHHH---HHTHH-HHHHHHHHHHCSSSC-EEEEEECTTCC----
T ss_pred EEEEEEEecCCchhhchHHHHHhhcCCEEEEEEeCCCHHH---HHHHH-HHHHHHHHhcCCCCC-EEEEEECCCCccccc
Confidence 679999999999887777777888999999999997531 11111 111222222223566 899999999975211
Q ss_pred hhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 497 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 497 e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
.. ......+.+.. .++++++||++|.|+.+
T Consensus 135 ~~----~~~~~~~~~~~-----~~~~~~~Sa~~g~gv~~ 164 (218)
T 4djt_A 135 IS----KKLVMEVLKGK-----NYEYFEISAKTAHNFGL 164 (218)
T ss_dssp CC----HHHHHHHTTTC-----CCEEEEEBTTTTBTTTH
T ss_pred cC----HHHHHHHHHHc-----CCcEEEEecCCCCCHHH
Confidence 11 12223333332 35799999999999976
No 142
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.61 E-value=4.6e-15 Score=159.21 Aligned_cols=158 Identities=21% Similarity=0.275 Sum_probs=105.6
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEee-CCe
Q 004209 340 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS-KNY 418 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~-~~~ 418 (768)
.++|+++|.+|+|||||+++|++..... .....+.|++.....+.. ++.
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~------------------------------~~~~~~~Ti~~~~~~~~~~~~~ 52 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAF------------------------------DTRRLGATIDVEHSHLRFLGNM 52 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTG------------------------------GGGGCCCCCSEEEEEEEETTTE
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCc------------------------------cccCcCCccceEEEEEEeCCce
Confidence 4799999999999999999998431111 112366777776666664 678
Q ss_pred EEEEEeCCCccchHHH-----HHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH--cCCCeEEEEEecccc
Q 004209 419 HVVVLDSPGHKDFVPN-----MISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDA 491 (768)
Q Consensus 419 ~i~lIDTPGh~~f~~~-----~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~--lgip~iIVVvNKmDl 491 (768)
.+.||||||+++|... ....+..+|++|+|+|++.... +..+ ....+.+..+.. .++| ++||+||+|+
T Consensus 53 ~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s---~~~l-~~~~~~l~~l~~~~~~~p-iilv~NK~Dl 127 (307)
T 3r7w_A 53 TLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEV---LKDI-EIFAKALKQLRKYSPDAK-IFVLLHKMDL 127 (307)
T ss_dssp EEEEEEECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTCSCH---HHHH-HHHHHHHHHHHHHCTTCE-EEEEEECGGG
T ss_pred EEEEEECCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCChhh---HHHH-HHHHHHHHHHHHhCCCCe-EEEEEecccc
Confidence 9999999999998443 3444578999999999997521 1111 011112222222 2666 8999999999
Q ss_pred ccc--chhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 492 VQY--SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 492 v~~--s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
... ..+.++....++..+.+.+|+. .++++++||++ .|+.+
T Consensus 128 ~~~~~r~~~~~v~~~~~~~~~~~~g~~--~~~~~~tSa~~-~~i~e 170 (307)
T 3r7w_A 128 VQLDKREELFQIMMKNLSETSSEFGFP--NLIGFPTSIWD-ESLYK 170 (307)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHTTTCC--SCEEEECCTTS-SHHHH
T ss_pred cchhhhhHHHHHHHHHHHHHHHHcCCC--CeEEEEeeecC-ChHHH
Confidence 852 1112224456677777777652 46899999999 67654
No 143
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.60 E-value=1.5e-15 Score=149.91 Aligned_cols=148 Identities=16% Similarity=0.081 Sum_probs=92.4
Q ss_pred CCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEee
Q 004209 336 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 415 (768)
Q Consensus 336 ~~~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~ 415 (768)
..++.++|+|+|..|+|||||+++|++..-. ....+ |.......+..
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~-------------------------------~~~~~--t~~~~~~~~~~ 62 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYV-------------------------------QEESP--EGGRFKKEIVV 62 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHHSSCC-------------------------------CCCCT--TCEEEEEEEEE
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcCCCC-------------------------------CCcCC--CcceEEEEEEE
Confidence 4467799999999999999999999842100 00001 11111123334
Q ss_pred CC--eEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH----cCCCeEEEEEecc
Q 004209 416 KN--YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS----FGVDQLIVAVNKM 489 (768)
Q Consensus 416 ~~--~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~----lgip~iIVVvNKm 489 (768)
++ ..+.||||||+++|. .+..+|++|+|+|++... .|+ .....+..+.. .++| +++|.||+
T Consensus 63 ~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i~v~d~~~~~---s~~----~~~~~~~~i~~~~~~~~~p-iilv~nK~ 129 (184)
T 3ihw_A 63 DGQSYLLLIRDEGGPPELQ-----FAAWVDAVVFVFSLEDEI---SFQ----TVYNYFLRLCSFRNASEVP-MVLVGTQD 129 (184)
T ss_dssp TTEEEEEEEEECSSSCCHH-----HHHHCSEEEEEEETTCHH---HHH----HHHHHHHHHHTTSCGGGSC-EEEEEECT
T ss_pred CCEEEEEEEEECCCChhhh-----eecCCCEEEEEEECcCHH---HHH----HHHHHHHHHHHhcCCCCCC-EEEEEECc
Confidence 44 567789999999876 566799999999998742 121 11222223332 3566 89999999
Q ss_pred cccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 490 DAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 490 Dlv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
|+........ ..++...+.+..+ .++++++||++|.|+.+
T Consensus 130 Dl~~~~~~~v--~~~~~~~~~~~~~----~~~~~e~Sa~~~~gv~~ 169 (184)
T 3ihw_A 130 AISAANPRVI--DDSRARKLSTDLK----RCTYYETCATYGLNVER 169 (184)
T ss_dssp TCBTTBCCCS--CHHHHHHHHHHTT----TCEEEEEBTTTTBTHHH
T ss_pred cccccccccc--CHHHHHHHHHHcC----CCeEEEecCCCCCCHHH
Confidence 9853211111 1123333444433 25789999999999976
No 144
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.60 E-value=1e-15 Score=148.77 Aligned_cols=152 Identities=14% Similarity=0.122 Sum_probs=90.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEE--EEEeeC
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAV--AYFDSK 416 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~--~~~~~~ 416 (768)
..++|+++|++|+|||||+++|+... ..... ..++.+... ..+...
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~--~~~~~------------------------------~~t~~~~~~~~~~~~~~ 54 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNT--FPTDY------------------------------VPTVFDNFSANVVVNGA 54 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSC--CC----------------------------------------CBCCCC----
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCC--CCCCC------------------------------CCeeeeeEEEEEEECCE
Confidence 46899999999999999999999532 11000 000000000 011123
Q ss_pred CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhH-HHHHHHHHc--CCCeEEEEEecccccc
Q 004209 417 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTR-EHAQLIRSF--GVDQLIVAVNKMDAVQ 493 (768)
Q Consensus 417 ~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~-e~l~ll~~l--gip~iIVVvNKmDlv~ 493 (768)
...+.||||||+++|...+...+..+|++|+|+|++... .+. ... ..+..+... ++| +++|+||+|+.+
T Consensus 55 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~----~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~ 126 (182)
T 3bwd_D 55 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA---SYE----NVSKKWIPELKHYAPGVP-IVLVGTKLDLRD 126 (182)
T ss_dssp ---CEEECCCC-CTTTTTGGGGGTTCSEEEEEEETTCHH---HHH----HHHHTHHHHHHHHCTTCC-EEEEEECHHHHT
T ss_pred EEEEEEEECCCChhhhhhHHhhccCCCEEEEEEECCCHH---HHH----HHHHHHHHHHHHhCCCCC-EEEEEechhhhc
Confidence 456779999999999887788888999999999998742 111 111 122333332 666 899999999975
Q ss_pred cchhhHH-------HHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 494 YSKDRFD-------SIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 494 ~s~e~~~-------~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
.... .. ....+...+.+..++ .+++++||++|.|+.+
T Consensus 127 ~~~~-~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~Sa~~~~gi~~ 170 (182)
T 3bwd_D 127 DKQF-FIDHPGAVPITTVQGEELKKLIGA----PAYIECSSKSQENVKG 170 (182)
T ss_dssp CHHH-HHHC--CCCCCHHHHHHHHHHHTC----SEEEECCTTTCTTHHH
T ss_pred Cccc-ccccccCCCCCHHHHHHHHHHcCC----CEEEEEECCCCCCHHH
Confidence 3211 00 012233344444442 4789999999999976
No 145
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.60 E-value=7.6e-16 Score=174.12 Aligned_cols=147 Identities=24% Similarity=0.292 Sum_probs=100.3
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeC
Q 004209 337 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 416 (768)
Q Consensus 337 ~~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~ 416 (768)
.|..++|+|+|++|+|||||+|+|++....+ ....+|+|.+.....+.+.
T Consensus 20 ~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~------------------------------v~~~~g~t~~~~~~~~~~~ 69 (456)
T 4dcu_A 20 HMGKPVVAIVGRPNVGKSTIFNRIAGERISI------------------------------VEDTPGVTRDRIYSSAEWL 69 (456)
T ss_dssp ---CCEEEEECSSSSSHHHHHHHHEEEEEC-----------------------------------------CEEEECTTC
T ss_pred hcCCCEEEEECCCCCcHHHHHHHHhCCCCcc------------------------------cCCCCCcceeEEEEEEEEC
Confidence 3556899999999999999999998532111 1224788998888888888
Q ss_pred CeEEEEEeCCC--------ccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEec
Q 004209 417 NYHVVVLDSPG--------HKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNK 488 (768)
Q Consensus 417 ~~~i~lIDTPG--------h~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNK 488 (768)
+..+.|||||| ++++...+...+..||++|+|+|+..+. .....+.+.++...++| +|+|+||
T Consensus 70 ~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~--------~~~d~~l~~~l~~~~~p-vilV~NK 140 (456)
T 4dcu_A 70 NYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGV--------TAADEEVAKILYRTKKP-VVLAVNK 140 (456)
T ss_dssp SSCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSCS--------CHHHHHHHHHHTTCCSC-EEEEEEC
T ss_pred CceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCC--------ChHHHHHHHHHHHcCCC-EEEEEEC
Confidence 99999999999 7777777888889999999999998763 34666777777778888 8999999
Q ss_pred ccccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 489 MDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 489 mDlv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
+|+.+.. .....+ ..+++. .++++||++|.|+.+
T Consensus 141 ~D~~~~~--------~~~~e~-~~lg~~----~~~~iSA~~g~gv~~ 174 (456)
T 4dcu_A 141 LDNTEMR--------ANIYDF-YSLGFG----EPYPISGTHGLGLGD 174 (456)
T ss_dssp C-----------------CCS-GGGSSS----SEEECCTTTCTTHHH
T ss_pred ccchhhh--------hhHHHH-HHcCCC----ceEEeecccccchHH
Confidence 9987421 111111 123432 457999999999966
No 146
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.59 E-value=3.5e-15 Score=155.22 Aligned_cols=154 Identities=18% Similarity=0.160 Sum_probs=99.0
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC
Q 004209 338 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 417 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~ 417 (768)
...++|+++|++|+|||||+|+|++....+... ...|+|.......+..++
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~-----------------------------~~~~~T~~~~~~~~~~~~ 69 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRL-----------------------------GATSVTRACTTGSRRWDK 69 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC--------------------------------------CCSCEEEEEEETT
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccC-----------------------------CCCCccccEEEEEEEECC
Confidence 457999999999999999999999543221110 113456666666677789
Q ss_pred eEEEEEeCCCc--------cchHHHHHHhc----ccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHc------CC
Q 004209 418 YHVVVLDSPGH--------KDFVPNMISGA----TQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF------GV 479 (768)
Q Consensus 418 ~~i~lIDTPGh--------~~f~~~~i~g~----~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~l------gi 479 (768)
..++||||||. .++...+...+ ..+|++|+|+|++. + .......+..+..+ +.
T Consensus 70 ~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~--~-------~~~~~~~~~~l~~~~~~~~~~~ 140 (247)
T 3lxw_A 70 CHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGR--F-------TAQDQQAVRQVRDMFGEDVLKW 140 (247)
T ss_dssp EEEEEEECCSCSSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTB--C-------CHHHHHHHHHHHHHHCGGGGGG
T ss_pred cEEEEEECCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCC--C-------CHHHHHHHHHHHHHhChhhhcc
Confidence 99999999996 55666665554 88999999999974 1 23444445445443 55
Q ss_pred CeEEEEEecccccccchhhHHHH--HHHHhHHHhhcCCCCCCCcEEEeeccc-----CCCccc
Q 004209 480 DQLIVAVNKMDAVQYSKDRFDSI--KVQLGTFLRSCGFKDASLTWIPLSALE-----NQNLVT 535 (768)
Q Consensus 480 p~iIVVvNKmDlv~~s~e~~~~i--~~el~~~lk~~g~~~~~i~~IpVSA~t-----G~gI~e 535 (768)
| +|||+||+|+.+.+.+.+-.- ...+..+++.++. .++++++.. +.|+.+
T Consensus 141 ~-iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~g~-----~~~~~~~~~~~~~~~~~v~~ 197 (247)
T 3lxw_A 141 M-VIVFTRKEDLAGGSLHDYVSNTENRALRELVAECGG-----RVCAFDNRATGREQEAQVEQ 197 (247)
T ss_dssp E-EEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTTT-----CEEECCTTCCHHHHHHHHHH
T ss_pred E-EEEEEchHhcCCCCHHHHHhhcccHHHHHHHHHcCC-----eEEEEeCCCCccccHHHHHH
Confidence 5 899999999975322221110 0346777777763 345555443 567755
No 147
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.59 E-value=3.9e-15 Score=149.26 Aligned_cols=155 Identities=14% Similarity=0.115 Sum_probs=95.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCe
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 418 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~ 418 (768)
..++|+++|++|+|||||+++|++.. .... . ....+.... ....+.....
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~--~~~~------------------------~---~~t~~~~~~-~~~~~~~~~~ 57 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNK--FPTD------------------------Y---IPTVFDNFS-ANVAVDGQIV 57 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC--CCSS------------------------C---CCSSCCCEE-EEEECSSCEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCC--CCcc------------------------C---CCccceeEE-EEEEECCEEE
Confidence 56899999999999999999999431 1000 0 000111111 1111222346
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHc--CCCeEEEEEecccccccch
Q 004209 419 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYSK 496 (768)
Q Consensus 419 ~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~l--gip~iIVVvNKmDlv~~s~ 496 (768)
.+.||||||+++|...+...+..+|++|+|+|++... .+.. .....+..+... ++| +|||+||+|+.+...
T Consensus 58 ~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~---s~~~---~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~ 130 (212)
T 2j0v_A 58 NLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKA---SYEN---VLKKWMPELRRFAPNVP-IVLVGTKLDLRDDKG 130 (212)
T ss_dssp EEEEECCCCCCCCCC--CGGGTTCSEEEEEEETTCHH---HHHH---HHHTHHHHHHHHCTTCC-EEEEEECHHHHTCHH
T ss_pred EEEEEECCCcHHHHHHHHhhccCCCEEEEEEECCCHH---HHHH---HHHHHHHHHHHhCCCCC-EEEEEeCHHhhhCcc
Confidence 8999999999998877777889999999999998742 1111 011222333333 677 899999999975211
Q ss_pred hhHH-----HHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 497 DRFD-----SIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 497 e~~~-----~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
... ....+...+.+.+++ .+++++||++|.|+.+
T Consensus 131 -~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~Sa~~g~gi~~ 169 (212)
T 2j0v_A 131 -YLADHTNVITSTQGEELRKQIGA----AAYIECSSKTQQNVKA 169 (212)
T ss_dssp -HHHTCSSCCCHHHHHHHHHHHTC----SEEEECCTTTCTTHHH
T ss_pred -ccccccCCCCHHHHHHHHHHcCC----ceEEEccCCCCCCHHH
Confidence 000 012233344444442 4789999999999976
No 148
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.59 E-value=5.2e-15 Score=146.89 Aligned_cols=154 Identities=16% Similarity=0.093 Sum_probs=94.1
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeC
Q 004209 337 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 416 (768)
Q Consensus 337 ~~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~ 416 (768)
....++|+++|+.|+|||||+++|++.. ... +. ..++.+.....+..+
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~--~~~-----------------------------~~-~~t~~~~~~~~~~~~ 64 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTTNG--YPT-----------------------------EY-IPTAFDNFSAVVSVD 64 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC----------------------------------------CCSSEEEEEEEEET
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCC--CCC-----------------------------CC-CCcccceeEEEEEEC
Confidence 3467899999999999999999998421 000 00 111111112233344
Q ss_pred C--eEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhH-HHHHHHHHc--CCCeEEEEEecccc
Q 004209 417 N--YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTR-EHAQLIRSF--GVDQLIVAVNKMDA 491 (768)
Q Consensus 417 ~--~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~-e~l~ll~~l--gip~iIVVvNKmDl 491 (768)
+ ..+.||||||+++|...+...+..+|++|+|+|++... .+. ... ..+..+... ++| ++||+||+|+
T Consensus 65 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~----~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl 136 (201)
T 2q3h_A 65 GRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPS---SFQ----NVSEKWVPEIRCHCPKAP-IILVGTQSDL 136 (201)
T ss_dssp TEEEEEEEEECCCSTTCSSSGGGGGTTCSEEEEEEETTCHH---HHH----HHHHTHHHHHHHHCSSSC-EEEEEECGGG
T ss_pred CEEEEEEEEECCCCHHHHHHhHhhcCCCcEEEEEEECCCHH---HHH----HHHHHHHHHHHHhCCCCC-EEEEEECHhh
Confidence 4 46779999999998776667788999999999998742 111 111 122223222 677 8999999999
Q ss_pred cccchhhHHH---------HHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 492 VQYSKDRFDS---------IKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 492 v~~s~e~~~~---------i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
.... ..... ..++...+.+..++ .+++++||++|.|+.+
T Consensus 137 ~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~Sa~~g~gi~~ 184 (201)
T 2q3h_A 137 REDV-KVLIELDKCKEKPVPEEAAKLLAEEIKA----ASYIECSALTQKNLKE 184 (201)
T ss_dssp GGCH-HHHHHHHTTTCCCCCHHHHHHHHHHHTC----SEEEECCTTTCTTHHH
T ss_pred hhch-hhhhhhcccccccCCHHHHHHHHHhcCC----cEEEEEecCCCCCHHH
Confidence 7521 11000 11223333434442 4789999999999976
No 149
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.59 E-value=5.1e-17 Score=161.80 Aligned_cols=150 Identities=19% Similarity=0.201 Sum_probs=91.7
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC
Q 004209 338 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 417 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~ 417 (768)
...++|+++|.+|+|||||+++|++..- ..+..++++.+.....+..++
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~ 79 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTY-------------------------------TESYISTIGVDFKIRTIELDG 79 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCC-------------------------------CCHHHHHHCCSEEEEEEEETT
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCC-------------------------------CCCcCCcccceEEEEEEEECC
Confidence 3568999999999999999999973211 111123344444444455555
Q ss_pred --eEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHc---CCCeEEEEEeccccc
Q 004209 418 --YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAV 492 (768)
Q Consensus 418 --~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~l---gip~iIVVvNKmDlv 492 (768)
..+.||||||+++|...+...+..+|++|+|+|++... .+ ......+..+... ++| +|||+||+|+.
T Consensus 80 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~----~~~~~~~~~i~~~~~~~~p-~ilv~nK~Dl~ 151 (199)
T 3l0i_B 80 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQE---SF----NNVKQWLQEIDRYASENVN-KLLVGNKCDLT 151 (199)
T ss_dssp EEEEEEEECCTTCTTCCCCSCC--CCCSEEEECC-CCCSH---HH----HHHHHHHHHHHSCC-CCSE-EEEC-CCSSCC
T ss_pred EEEEEEEEECCCcHhHHHHHHHHhhcCCEEEEEEECCCHH---HH----HHHHHHHHHHHHhccCCCC-EEEEEECccCC
Confidence 67999999999998777777888999999999999752 11 1222233333333 555 89999999997
Q ss_pred ccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 493 QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 493 ~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
+...... .+...+.+.++ ++++++||++|.|+.+
T Consensus 152 ~~~~v~~----~~~~~~~~~~~-----~~~~~vSA~~g~gv~~ 185 (199)
T 3l0i_B 152 TKKVVDY----TTAKEFADSLG-----IPFLETSAKNATNVEQ 185 (199)
T ss_dssp --CCCCS----CC-CHHHHTTT-----CCBCCCCC---HHHHH
T ss_pred ccccCCH----HHHHHHHHHcC-----CeEEEEECCCCCCHHH
Confidence 5321111 12223333333 4689999999999976
No 150
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.58 E-value=3e-15 Score=170.68 Aligned_cols=151 Identities=19% Similarity=0.197 Sum_probs=103.0
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC
Q 004209 338 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 417 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~ 417 (768)
+..++|+|+|.+|+|||||+++|++.. +. ....|+......+..++
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~--~~--------------------------------~~~~T~~~~~~~~~~~~ 365 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQ--SV--------------------------------TTIPTVGFNVETVTYKN 365 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSS--CC--------------------------------CCCCCSSEEEEEEESSS
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCC--CC--------------------------------CcCCccceeEEEEEeCC
Confidence 456899999999999999999999531 00 01124445555677788
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH---cCCCeEEEEEeccccccc
Q 004209 418 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQY 494 (768)
Q Consensus 418 ~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~---lgip~iIVVvNKmDlv~~ 494 (768)
..+.||||||+++|...+...+..+|++|+|+|++... .|.. .......++.. .++| +|||+||+|+.+.
T Consensus 366 ~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D~~~~~---s~~~---~~~~~~~~~~~~~~~~~p-~ilv~NK~Dl~~~ 438 (497)
T 3lvq_E 366 VKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRD---RIDE---ARQELHRIINDREMRDAI-ILIFANKQDLPDA 438 (497)
T ss_dssp CEEEEEEECCCGGGSGGGGGGGTTCCEEEEEEETTCGG---GHHH---HHHHHHHHHTSGGGTTCE-EEEEEECCSSSSC
T ss_pred EEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcchh---HHHH---HHHHHHHHhhhhhcCCCc-EEEEEECCCCCcC
Confidence 99999999999999888888899999999999998752 1211 11122222221 3666 8999999999752
Q ss_pred chhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 495 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 495 s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
...+++...+.. .......++++++||++|+||.+
T Consensus 439 --~~~~~~~~~~~~----~~~~~~~~~~~~~SA~~g~gi~~ 473 (497)
T 3lvq_E 439 --MKPHEIQEKLGL----TRIRDRNWYVQPSCATSGDGLYE 473 (497)
T ss_dssp --CCHHHHHHHTTC----TTCCSSCEEEEECBTTTTBTHHH
T ss_pred --CCHHHHHHHhch----hhhhcCCeEEEEEECCCCCCHHH
Confidence 122223222221 11122346799999999999976
No 151
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.58 E-value=6.2e-15 Score=147.00 Aligned_cols=150 Identities=19% Similarity=0.121 Sum_probs=93.2
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC
Q 004209 338 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 417 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~ 417 (768)
...++|+++|.+|+|||||+++|++...... ..++++.+.....+..++
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~ 69 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDSA-------------------------------HEPENPEDTYERRIMVDK 69 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCCEECCGG-------------------------------GTTTSCTTEEEEEEEETT
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhccCCcc-------------------------------CCCCcccceEEEEEEECC
Confidence 3568999999999999999999973211110 012223222223333343
Q ss_pred --eEEEEEeCCCccchHH-HHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH----cCCCeEEEEEeccc
Q 004209 418 --YHVVVLDSPGHKDFVP-NMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS----FGVDQLIVAVNKMD 490 (768)
Q Consensus 418 --~~i~lIDTPGh~~f~~-~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~----lgip~iIVVvNKmD 490 (768)
..+.||||||+.++.. .....+..+|++|+|+|++... .|.. ..+.+..+.. .++| +|+|.||+|
T Consensus 70 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~---s~~~----~~~~~~~i~~~~~~~~~p-iilv~nK~D 141 (195)
T 3cbq_A 70 EEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRR---SFSK----VPETLLRLRAGRPHHDLP-VILVGNKSD 141 (195)
T ss_dssp EEEEEEEECCCCCSGGGHHHHHHHHHHCSEEEEEEETTCHH---HHHT----HHHHHHHHHHHSTTSCCC-EEEEEECTT
T ss_pred EEEEEEEEecCCCccchhhhHHHhhccCCEEEEEEECCCHH---HHHH----HHHHHHHHHHhcCCCCCC-EEEEeechh
Confidence 5678999999988754 3344567899999999998642 2222 1222222222 3677 899999999
Q ss_pred ccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 491 AVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 491 lv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
+.+...-..+ +...+.+..+ ++++++||++|.|+.+
T Consensus 142 l~~~~~v~~~----~~~~~a~~~~-----~~~~e~Sa~~~~~v~~ 177 (195)
T 3cbq_A 142 LARSREVSLE----EGRHLAGTLS-----CKHIETSAALHHNTRE 177 (195)
T ss_dssp CTTTCCSCHH----HHHHHHHHTT-----CEEEEEBTTTTBSHHH
T ss_pred ccccCCcCHH----HHHHHHHHhC-----CEEEEEcCCCCCCHHH
Confidence 9752111112 2223333333 4789999999999976
No 152
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.58 E-value=1e-14 Score=153.79 Aligned_cols=157 Identities=16% Similarity=0.237 Sum_probs=87.1
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC--
Q 004209 340 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN-- 417 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~-- 417 (768)
.++|+++|++|+|||||+|+|++........ ........++++++.....+..++
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~-----------------------~~~~~~~~~t~~~~~~~~~~~~~~~~ 64 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLFLTDLYSPEY-----------------------PGPSHRIKKTVQVEQSKVLIKEGGVQ 64 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHSSSCC--------------------------------------CCCEEEEEEECC--CC
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCccccCC-----------------------CCcccccCCceEEEEEEEEEecCCeE
Confidence 5899999999999999999998432111000 000001124445555555555444
Q ss_pred eEEEEEeCCCccc-------hHHHH-------HHhc-------------ccCCEEEEEEecCCCccccccccchhhhHHH
Q 004209 418 YHVVVLDSPGHKD-------FVPNM-------ISGA-------------TQSDAAILVIDASVGSFEVGMNTAKGLTREH 470 (768)
Q Consensus 418 ~~i~lIDTPGh~~-------f~~~~-------i~g~-------------~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~ 470 (768)
..++||||||+.+ +.... ...+ ..+|++|++|++.... +.....+.
T Consensus 65 ~~l~liDTpG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~-------~~~~d~~~ 137 (274)
T 3t5d_A 65 LLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHG-------LKPLDIEF 137 (274)
T ss_dssp EEEEEEECCCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSS-------CCHHHHHH
T ss_pred EEEEEEECCCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCC-------CCHHHHHH
Confidence 4899999999732 11111 1111 1278999999765421 23455556
Q ss_pred HHHHHHcCCCeEEEEEecccccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 471 AQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 471 l~ll~~lgip~iIVVvNKmDlv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
+..+.. ++| +|+|+||+|+.. .+.....++.+...+...+ ++++++||.+++|+.+
T Consensus 138 l~~l~~-~~p-vi~V~nK~D~~~--~~e~~~~~~~i~~~l~~~~-----i~v~~~sa~~~~~~~~ 193 (274)
T 3t5d_A 138 MKRLHE-KVN-IIPLIAKADTLT--PEECQQFKKQIMKEIQEHK-----IKIYEFPETDDEEENK 193 (274)
T ss_dssp HHHHTT-TSC-EEEEESSGGGSC--HHHHHHHHHHHHHHHHHTT-----CCCCCC----------
T ss_pred HHHHhc-cCC-EEEEEeccCCCC--HHHHHHHHHHHHHHHHHcC-----CeEEcCCCCCChhHHH
Confidence 655555 777 899999999975 4555566666777666554 4568899999999965
No 153
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.57 E-value=1.9e-15 Score=171.83 Aligned_cols=143 Identities=25% Similarity=0.308 Sum_probs=102.3
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCeE
Q 004209 340 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 419 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~~ 419 (768)
.++|+|+|.+|+|||||+|+|++....+. ...+|+|.+.....+..++..
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~v------------------------------s~~~gTT~d~~~~~i~~~g~~ 292 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIV------------------------------TDIPGTTRDVISEEIVIRGIL 292 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCC------------------------------CCSSCCSSCSCCEEEEETTEE
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCcc------------------------------CCCCCeeeeeEEEEEecCCeE
Confidence 47999999999999999999996422111 123677888777777788999
Q ss_pred EEEEeCCCcc-ch--------HHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEeccc
Q 004209 420 VVVLDSPGHK-DF--------VPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 490 (768)
Q Consensus 420 i~lIDTPGh~-~f--------~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmD 490 (768)
+.||||||+. ++ +..+...+..+|++|+|+|++.+. ..+..+.+..+ .+.| +|+|+||+|
T Consensus 293 ~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~--------s~~~~~il~~l--~~~p-iivV~NK~D 361 (482)
T 1xzp_A 293 FRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPL--------DEEDRKILERI--KNKR-YLVVINKVD 361 (482)
T ss_dssp EEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCC--------CHHHHHHHHHH--TTSS-EEEEEEECS
T ss_pred EEEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCC--------CHHHHHHHHHh--cCCC-EEEEEECcc
Confidence 9999999988 54 245667888999999999998763 11223333333 3566 899999999
Q ss_pred ccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 491 AVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 491 lv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
+.+. ...+ ++..++ + ...+++++||++|+|+.+
T Consensus 362 L~~~--~~~~----~~~~~~---~---~~~~~i~iSAktg~Gi~e 394 (482)
T 1xzp_A 362 VVEK--INEE----EIKNKL---G---TDRHMVKISALKGEGLEK 394 (482)
T ss_dssp SCCC--CCHH----HHHHHH---T---CSTTEEEEEGGGTCCHHH
T ss_pred cccc--cCHH----HHHHHh---c---CCCcEEEEECCCCCCHHH
Confidence 9752 1112 222222 2 125789999999999976
No 154
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.57 E-value=9.2e-15 Score=144.31 Aligned_cols=154 Identities=18% Similarity=0.193 Sum_probs=90.3
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC
Q 004209 338 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 417 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~ 417 (768)
...++|+++|..|+|||||+++|++.. .... .....+.+.. ....+....
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~--~~~~---------------------------~~~t~~~~~~-~~~~~~~~~ 68 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTKR--FISE---------------------------YDPNLEDTYS-SEETVDHQP 68 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSS--CCSC---------------------------CCTTCCEEEE-EEEEETTEE
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhCC--CCcc---------------------------cCCCccceee-EEEEECCEE
Confidence 456899999999999999999999531 0000 0001111111 111222234
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH--cCCCeEEEEEecccccccc
Q 004209 418 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQYS 495 (768)
Q Consensus 418 ~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~--lgip~iIVVvNKmDlv~~s 495 (768)
..+.||||||+++|.. +...+..+|++|+|+|++... .|+.+..+..+....+.. .++| +|||+||+|+.+..
T Consensus 69 ~~l~i~Dt~G~~~~~~-~~~~~~~~~~~ilv~d~~~~~---s~~~~~~~~~~i~~~~~~~~~~~p-iilv~nK~Dl~~~~ 143 (187)
T 3c5c_A 69 VHLRVMDTADLDTPRN-CERYLNWAHAFLVVYSVDSRQ---SFDSSSSYLELLALHAKETQRSIP-ALLLGNKLDMAQYR 143 (187)
T ss_dssp EEEEEEECCC---CCC-THHHHTTCSEEEEEEETTCHH---HHHHHHHHHHHHHHHHHHHCCCCC-EEEEEECGGGGGGC
T ss_pred EEEEEEECCCCCcchh-HHHHHhhCCEEEEEEECCCHH---HHHHHHHHHHHHHHHhhccCCCCC-EEEEEECcchhhcC
Confidence 6788999999988754 345778899999999998642 222211111111111111 3677 89999999997521
Q ss_pred hhhHHHHHHHHhHHHhhcCCCCCCCcEEEeec-ccCCCccc
Q 004209 496 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSA-LENQNLVT 535 (768)
Q Consensus 496 ~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA-~tG~gI~e 535 (768)
.-. .++...+.+..+ ++++++|| ++|.|+.+
T Consensus 144 ~v~----~~~~~~~~~~~~-----~~~~e~Sa~~~g~gv~~ 175 (187)
T 3c5c_A 144 QVT----KAEGVALAGRFG-----CLFFEVSACLDFEHVQH 175 (187)
T ss_dssp SSC----HHHHHHHHHHHT-----CEEEECCSSSCSHHHHH
T ss_pred ccC----HHHHHHHHHHcC-----CcEEEEeecCccccHHH
Confidence 111 122333444444 47899999 89999976
No 155
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.56 E-value=1e-14 Score=147.47 Aligned_cols=158 Identities=15% Similarity=0.107 Sum_probs=97.0
Q ss_pred CCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEE-EEEEEe
Q 004209 336 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTV-AVAYFD 414 (768)
Q Consensus 336 ~~~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~-~~~~~~ 414 (768)
..+..++|+++|..|+|||||+++|++..- .....+.+.... ....+.
T Consensus 23 ~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~-------------------------------~~~~~~t~~~~~~~~~~~~ 71 (214)
T 3q3j_B 23 PVVARCKLVLVGDVQCGKTAMLQVLAKDCY-------------------------------PETYVPTVFENYTACLETE 71 (214)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHSCC-------------------------------CSSCCCCSEEEEEEEEEC-
T ss_pred CccceEEEEEECcCCCCHHHHHHHHhcCCC-------------------------------CCCcCCeeeeeEEEEEEEC
Confidence 345679999999999999999999985210 000111122221 112233
Q ss_pred eCCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHc--CCCeEEEEEeccccc
Q 004209 415 SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAV 492 (768)
Q Consensus 415 ~~~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~l--gip~iIVVvNKmDlv 492 (768)
.....+.||||||+++|...+...+..+|++|+|+|++... .|.. .....+..+... ++| +++|.||+|+.
T Consensus 72 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~---~~~~~~~~i~~~~~~~p-iilv~nK~Dl~ 144 (214)
T 3q3j_B 72 EQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPE---TVDS---ALKKWRTEILDYCPSTR-VLLIGCKTDLR 144 (214)
T ss_dssp -CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCTH---HHHH---HHTHHHHHHHHHCTTSE-EEEEEECGGGG
T ss_pred CEEEEEEEEECCCCHhHHHHHHHHcCCCeEEEEEEECcCHH---HHHH---HHHHHHHHHHHhCCCCC-EEEEEEChhhc
Confidence 34568999999999999887778889999999999998752 1111 012223333333 566 89999999997
Q ss_pred ccchhh--------HHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCC-ccc
Q 004209 493 QYSKDR--------FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQN-LVT 535 (768)
Q Consensus 493 ~~s~e~--------~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~g-I~e 535 (768)
+..... .....++...+.+.+++ .+++++||++|.| +.+
T Consensus 145 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~e~SA~~g~g~v~~ 192 (214)
T 3q3j_B 145 TDLSTLMELSHQKQAPISYEQGCAIAKQLGA----EIYLEGSAFTSEKSIHS 192 (214)
T ss_dssp GCHHHHHHHHHTTCCCCCHHHHHHHHHHHTC----SEEEECCTTTCHHHHHH
T ss_pred cchhhhhhhcccccCccCHHHHHHHHHHcCC----CEEEEeccCCCcccHHH
Confidence 521000 00012233444444443 2789999999998 976
No 156
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.56 E-value=7.6e-15 Score=143.53 Aligned_cols=150 Identities=24% Similarity=0.331 Sum_probs=91.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCeEE
Q 004209 341 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 420 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~~i 420 (768)
++|+++|.+|+|||||+++|++.. ......+|+|.......+ . .+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~-------------------------------~~~~~~~~~t~~~~~~~~--~--~~ 46 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKK-------------------------------VRRGKRPGVTRKIIEIEW--K--NH 46 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCC-------------------------------CSSSSSTTCTTSCEEEEE--T--TE
T ss_pred cEEEEECCCCCCHHHHHHHHhCcC-------------------------------CccCCCCCccceeEEEec--C--CE
Confidence 689999999999999999999421 011122455544433333 2 68
Q ss_pred EEEeCCC-----------ccchHHHH---HHh-cccCCEEEEEEecCCCcccccccc-----chhhhHHHHHHHHHcCCC
Q 004209 421 VVLDSPG-----------HKDFVPNM---ISG-ATQSDAAILVIDASVGSFEVGMNT-----AKGLTREHAQLIRSFGVD 480 (768)
Q Consensus 421 ~lIDTPG-----------h~~f~~~~---i~g-~~~aD~aILVVDA~~g~~e~~~~~-----~~~qt~e~l~ll~~lgip 480 (768)
.|||||| ++.|...+ ... +..+++++.|+|+... +.-... ...+..+.+..+...++|
T Consensus 47 ~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 124 (190)
T 2cxx_A 47 KIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAA--PEIIKRWEKRGEIPIDVEFYQFLRELDIP 124 (190)
T ss_dssp EEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHH--HHHHHHHHHTTCCCHHHHHHHHHHHTTCC
T ss_pred EEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhh--hhHHHhhhccCccHHHHHHHHHHHhcCCc
Confidence 9999999 45554443 333 5567888888887642 100000 011223344555667888
Q ss_pred eEEEEEecccccccchhhHHHHHHHHhHHHhhcCCCCC--CCcEEEeecccCCCccc
Q 004209 481 QLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDA--SLTWIPLSALENQNLVT 535 (768)
Q Consensus 481 ~iIVVvNKmDlv~~s~e~~~~i~~el~~~lk~~g~~~~--~i~~IpVSA~tG~gI~e 535 (768)
+++|+||+|+.... ...+..+.+.+++... ..+++++||++|.|+.+
T Consensus 125 -iilv~nK~Dl~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 173 (190)
T 2cxx_A 125 -TIVAVNKLDKIKNV-------QEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIER 173 (190)
T ss_dssp -EEEEEECGGGCSCH-------HHHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHH
T ss_pred -eEEEeehHhccCcH-------HHHHHHHHHHhhhhhhccCCcEEEEecCCCCCHHH
Confidence 89999999998632 1222333333343100 13579999999999976
No 157
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.55 E-value=2.2e-14 Score=139.22 Aligned_cols=146 Identities=16% Similarity=0.115 Sum_probs=87.7
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC
Q 004209 338 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 417 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~ 417 (768)
++.++|+++|..|+|||||+++|++..-. . .....+... ...+..++
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~---------------------------~---~~~t~~~~~---~~~~~~~~ 51 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQ---------------------------V---LEKTESEQY---KKEMLVDG 51 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCC---------------------------C---CSSCSSSEE---EEEEEETT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCC---------------------------C---cCCCcceeE---EEEEEECC
Confidence 35689999999999999999999952110 0 000111111 12222333
Q ss_pred --eEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH------cCCCeEEEEEecc
Q 004209 418 --YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS------FGVDQLIVAVNKM 489 (768)
Q Consensus 418 --~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~------lgip~iIVVvNKm 489 (768)
..+.||||||++++ ..+..+|++|+|+|++... ++. .....+..+.. .++| +++|.||+
T Consensus 52 ~~~~l~i~Dt~G~~~~-----~~~~~~d~~ilv~D~~~~~---s~~----~~~~~~~~i~~~~~~~~~~~p-iilv~nK~ 118 (178)
T 2iwr_A 52 QTHLVLIREEAGAPDA-----KFSGWADAVIFVFSLEDEN---SFQ----AVSRLHGQLSSLRGEGRGGLA-LALVGTQD 118 (178)
T ss_dssp EEEEEEEEECSSSCCH-----HHHHHCSEEEEEEETTCHH---HHH----HHHHHHHHHHHHHCSSSCCCE-EEEEEECT
T ss_pred EEEEEEEEECCCCchh-----HHHHhCCEEEEEEECcCHH---HHH----HHHHHHHHHHHHHhcCCCCCC-EEEEEECc
Confidence 56889999999873 3456799999999998742 121 11221112222 2556 89999999
Q ss_pred cccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 490 DAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 490 Dlv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
|+.+...... ..++...+.+..+ .++++++||++|.|+.+
T Consensus 119 Dl~~~~~~~v--~~~~~~~~~~~~~----~~~~~~~Sa~~~~~i~~ 158 (178)
T 2iwr_A 119 RISASSPRVV--GDARARALXADMK----RCSYYETXATYGLNVDR 158 (178)
T ss_dssp TCBTTBCCCS--CHHHHHHHHHHHS----SEEEEEEBTTTTBTHHH
T ss_pred cccccccCcC--CHHHHHHHHHhhc----CCeEEEEeccccCCHHH
Confidence 9853111110 0122223333321 35789999999999976
No 158
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.55 E-value=1.7e-14 Score=141.55 Aligned_cols=155 Identities=15% Similarity=0.144 Sum_probs=95.0
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEE-EEEEeeC
Q 004209 338 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVA-VAYFDSK 416 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~-~~~~~~~ 416 (768)
...++|+++|.+|+|||||+++|++..-. ....+.+..... ...+...
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~-------------------------------~~~~~t~~~~~~~~~~~~~~ 53 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFP-------------------------------ENYVPTVFENYTASFEIDTQ 53 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCC-------------------------------SSCCCCSEEEEEEEEECSSC
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCC-------------------------------CCCCCccceeEEEEEEECCE
Confidence 35689999999999999999999952100 000111111111 1122234
Q ss_pred CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH--cCCCeEEEEEeccccccc
Q 004209 417 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQY 494 (768)
Q Consensus 417 ~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~--lgip~iIVVvNKmDlv~~ 494 (768)
...+.||||||+++|...+...+..+|++|+|+|++... .|..+ ....+..+.. -++| +|+|+||+|+.+.
T Consensus 54 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~---~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~ 126 (184)
T 1m7b_A 54 RIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPE---TLDSV---LKKWKGEIQEFCPNTK-MLLVGCKSDLRTD 126 (184)
T ss_dssp EEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHH---HHHHH---HHTHHHHHHHHCTTCE-EEEEEECGGGGGC
T ss_pred EEEEEEEECCCChhhhhhHHhhcCCCcEEEEEEECCCHH---HHHHH---HHHHHHHHHHHCCCCC-EEEEEEcchhhcc
Confidence 467899999999998777777788999999999998742 11111 0111222222 2555 8999999999752
Q ss_pred chhhHHHH---------HHHHhHHHhhcCCCCCCCcEEEeecc-cCCCccc
Q 004209 495 SKDRFDSI---------KVQLGTFLRSCGFKDASLTWIPLSAL-ENQNLVT 535 (768)
Q Consensus 495 s~e~~~~i---------~~el~~~lk~~g~~~~~i~~IpVSA~-tG~gI~e 535 (768)
.....++ .++...+.+.++ .++++++||+ +|.|+.+
T Consensus 127 -~~~~~~~~~~~~~~v~~~~~~~~~~~~~----~~~~~e~Sa~~~~~gi~~ 172 (184)
T 1m7b_A 127 -VSTLVELSNHRQTPVSYDQGANMAKQIG----AATYIECSALQSENSVRD 172 (184)
T ss_dssp -HHHHHHHHTTTCCCCCHHHHHHHHHHHT----CSEEEECBTTTBHHHHHH
T ss_pred -hhhHhhhhhcccCCCCHHHHHHHHHHcC----CcEEEEeeecCCCcCHHH
Confidence 1111111 123334444444 2578999999 6899976
No 159
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.55 E-value=3.6e-15 Score=168.80 Aligned_cols=143 Identities=25% Similarity=0.249 Sum_probs=90.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCe
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 418 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~ 418 (768)
..++|+++|++|+|||||+|+|++....+. ...+|+|.+.....+..++.
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v------------------------------~~~~gtT~d~~~~~i~~~g~ 272 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIV------------------------------TDLPGTTRDVVESQLVVGGI 272 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCC------------------------------SCCTTCCHHHHHHEEEETTE
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccc------------------------------cCCCCeeEEEEEEEEEECCE
Confidence 357899999999999999999996432211 11255666655555666889
Q ss_pred EEEEEeCCCccchHH--------HHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEeccc
Q 004209 419 HVVVLDSPGHKDFVP--------NMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 490 (768)
Q Consensus 419 ~i~lIDTPGh~~f~~--------~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmD 490 (768)
.+.||||||+.++.. .+...+..+|++|+|+|++.+. ..+..+.+..+. ..| +|+|+||+|
T Consensus 273 ~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~--------~~~~~~i~~~l~--~~p-iivV~NK~D 341 (462)
T 3geh_A 273 PVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGW--------TTGDQEIYEQVK--HRP-LILVMNKID 341 (462)
T ss_dssp EEEECC--------------------CCCCSCSEEEEEEETTTCS--------CHHHHHHHHHHT--TSC-EEEEEECTT
T ss_pred EEEEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCC--------CHHHHHHHHhcc--CCc-EEEEEECCC
Confidence 999999999876532 2344677899999999999763 223333333332 245 899999999
Q ss_pred ccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 491 AVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 491 lv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
+..... .. . ++.+. ...+++++||++|.|+.+
T Consensus 342 l~~~~~--~~----~----~~~~~---~~~~~i~iSAktg~Gi~e 373 (462)
T 3geh_A 342 LVEKQL--IT----S----LEYPE---NITQIVHTAAAQKQGIDS 373 (462)
T ss_dssp SSCGGG--ST----T----CCCCT---TCCCEEEEBTTTTBSHHH
T ss_pred CCcchh--hH----H----HHHhc---cCCcEEEEECCCCCCHHH
Confidence 975321 11 1 11111 235789999999999976
No 160
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.53 E-value=3.2e-14 Score=143.22 Aligned_cols=154 Identities=16% Similarity=0.169 Sum_probs=95.2
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEe--e
Q 004209 338 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD--S 415 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~--~ 415 (768)
...++|+++|..|+|||||+++|++..- .....+.+.... ...+. .
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~-------------------------------~~~~~~t~~~~~-~~~~~~~~ 73 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCF-------------------------------PENYVPTVFENY-TASFEIDT 73 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCC-------------------------------CSSCCCCSEEEE-EEEEESSS
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCC-------------------------------CCCcCCccceeE-EEEEEECC
Confidence 3568999999999999999999995210 000011111111 11222 3
Q ss_pred CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH--cCCCeEEEEEecccccc
Q 004209 416 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQ 493 (768)
Q Consensus 416 ~~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~--lgip~iIVVvNKmDlv~ 493 (768)
....+.||||||+++|.......+..+|++|+|+|++... .|..+ ....+..+.. .++| +|+|+||+|+.+
T Consensus 74 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~---s~~~~---~~~~~~~i~~~~~~~p-iilv~nK~Dl~~ 146 (205)
T 1gwn_A 74 QRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPE---TLDSV---LKKWKGEIQEFCPNTK-MLLVGCKSDLRT 146 (205)
T ss_dssp SEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHH---HHHHH---HHTHHHHHHHHCTTCE-EEEEEECGGGGG
T ss_pred EEEEEEEEeCCCcHhhhHHHHhhccCCCEEEEEEECCCHH---HHHHH---HHHHHHHHHHHCCCCC-EEEEEechhhcc
Confidence 3467999999999998777777788999999999998742 12111 0112222222 2555 899999999975
Q ss_pred cchhhHHHH---------HHHHhHHHhhcCCCCCCCcEEEeecc-cCCCccc
Q 004209 494 YSKDRFDSI---------KVQLGTFLRSCGFKDASLTWIPLSAL-ENQNLVT 535 (768)
Q Consensus 494 ~s~e~~~~i---------~~el~~~lk~~g~~~~~i~~IpVSA~-tG~gI~e 535 (768)
. .....++ .++...+.+.++ .++++++||+ +|.|+.+
T Consensus 147 ~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~----~~~~~e~SAk~~~~gv~~ 193 (205)
T 1gwn_A 147 D-VSTLVELSNHRQTPVSYDQGANMAKQIG----AATYIECSALQSENSVRD 193 (205)
T ss_dssp C-HHHHHHHHTTTCCCCCHHHHHHHHHHHT----CSEEEECCTTTCHHHHHH
T ss_pred c-hhhhhhhcccccCCCCHHHHHHHHHHcC----CCEEEEeeeccCCcCHHH
Confidence 2 1111111 122334444444 2578999999 6899976
No 161
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.29 E-value=7.3e-16 Score=153.80 Aligned_cols=154 Identities=16% Similarity=0.158 Sum_probs=94.6
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEE--EEee
Q 004209 338 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVA--YFDS 415 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~--~~~~ 415 (768)
...++|+++|.+|+|||||+++|++.. .... ...++.+.... .+..
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~--~~~~------------------------------~~~t~~~~~~~~~~~~~ 75 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNA--FPGE------------------------------YIPTVFDNYSANVMVDG 75 (204)
Confidence 456899999999999999999998421 1000 00111111111 1222
Q ss_pred CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHc--CCCeEEEEEecccccc
Q 004209 416 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQ 493 (768)
Q Consensus 416 ~~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~l--gip~iIVVvNKmDlv~ 493 (768)
....+.||||||+++|...+...+..+|++|+|+|++.+. .+... ....+..+... ++| +++|+||+|+.+
T Consensus 76 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~---s~~~~---~~~~~~~l~~~~~~~p-iilv~NK~Dl~~ 148 (204)
T 3th5_A 76 KPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPA---SFENV---RAKWYPEVRHHCPNTP-IILVGTKLDLRD 148 (204)
Confidence 3456779999999999888888889999999999998752 12111 11222222222 666 899999999975
Q ss_pred cchhhHHH---------HHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 494 YSKDRFDS---------IKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 494 ~s~e~~~~---------i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
.. ...+. ...+...+.+..++ .+++++||++|.|+.+
T Consensus 149 ~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~vSA~~g~gi~~ 194 (204)
T 3th5_A 149 DK-DTIEKLKEKKLTPITYPQGLAMAKEIGA----VKYLECSALTQRGLKT 194 (204)
Confidence 21 11110 11222223322221 3789999999999976
No 162
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.51 E-value=4.5e-14 Score=143.61 Aligned_cols=150 Identities=16% Similarity=0.106 Sum_probs=88.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC-
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN- 417 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~- 417 (768)
..++|+|+|.+|+|||||+++|++....+.... ..++.+.....+..++
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~------------------------------~~~g~d~~~~~i~~~~~ 85 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDC------------------------------EVLGEDTYERTLMVDGE 85 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---------------------------------CCTTEEEEEEEETTE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCcC------------------------------CccceeeEEEEEEECCe
Confidence 458999999999999999999984322211100 1111121122233344
Q ss_pred -eEEEEEeCCCccchHH-HHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH----cCCCeEEEEEecccc
Q 004209 418 -YHVVVLDSPGHKDFVP-NMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS----FGVDQLIVAVNKMDA 491 (768)
Q Consensus 418 -~~i~lIDTPGh~~f~~-~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~----lgip~iIVVvNKmDl 491 (768)
..+.+|||+|...... ......+.+|++|+|+|.+.. ..|+. ..+.+..+.. .++| +|+|.||+|+
T Consensus 86 ~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~~ilVydvt~~---~sf~~----~~~~~~~l~~~~~~~~~p-iilVgNK~DL 157 (211)
T 2g3y_A 86 SATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDR---ASFEK----ASELRIQLRRARQTEDIP-IILVGNKSDL 157 (211)
T ss_dssp EEEEEEECCTTTTHHHHHHHHCCCCCCSEEEEEEETTCH---HHHHH----HHHHHHHHHTSGGGTTSC-EEEEEECTTC
T ss_pred eeEEEEeecCCCcchhhhHHHHHHhhCCEEEEEEECCCH---HHHHH----HHHHHHHHHHHhCCCCCc-EEEEEEChHH
Confidence 4578999999877322 223345679999999999863 12221 1112222222 2677 8999999999
Q ss_pred cccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 492 VQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 492 v~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
.....-..+ +...+....+ ++++++||++|.||.+
T Consensus 158 ~~~r~v~~~----e~~~~a~~~~-----~~~~e~SAk~g~~v~e 192 (211)
T 2g3y_A 158 VRCREVSVS----EGRACAVVFD-----CKFIETSAAVQHNVKE 192 (211)
T ss_dssp GGGCCSCHH----HHHHHHHHHT-----CEEEECBTTTTBSHHH
T ss_pred hcCceEeHH----HHHHHHHHcC-----CEEEEEeCCCCCCHHH
Confidence 742111111 1122222333 4789999999999976
No 163
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.51 E-value=6.2e-15 Score=160.78 Aligned_cols=149 Identities=18% Similarity=0.155 Sum_probs=96.6
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC-e
Q 004209 340 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN-Y 418 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~-~ 418 (768)
..+|+|+|.+|||||||+++|+.....+ ...+.+|+......+...+ .
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~~~~i-------------------------------~~~~ftTl~p~~g~v~~~~~~ 206 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSAKPKI-------------------------------ADYHFTTLVPNLGMVETDDGR 206 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEECCEE-------------------------------SSTTSSCCCCCEEEEECSSSC
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcCCCcc-------------------------------ccCCccccCceEEEEEeCCCc
Confidence 3579999999999999999998432111 1113445555555566654 7
Q ss_pred EEEEEeCCCccc-------hHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH-----cCCCeEEEEE
Q 004209 419 HVVVLDSPGHKD-------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-----FGVDQLIVAV 486 (768)
Q Consensus 419 ~i~lIDTPGh~~-------f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~-----lgip~iIVVv 486 (768)
.+.||||||+.+ +....++.+..+|++|+|||++.......+ ......+..+.. ..+| +|||+
T Consensus 207 ~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~----~~~~~~~~eL~~~~~~l~~~p-~ilV~ 281 (342)
T 1lnz_A 207 SFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPY----DDYLTINQELSEYNLRLTERP-QIIVA 281 (342)
T ss_dssp EEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHH----HHHHHHHHHHHHSCSSTTTSC-BCBEE
T ss_pred eEEEecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCcccccChH----HHHHHHHHHHHHhhhhhcCCC-EEEEE
Confidence 899999999644 456667778889999999999752101111 122333334444 2566 79999
Q ss_pred ecccccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 487 NKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 487 NKmDlv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
||+|+... .+.+ +++.. .+.. ..+++++||++++|+.+
T Consensus 282 NK~Dl~~~-~e~~----~~l~~---~l~~---~~~v~~iSA~tg~gi~e 319 (342)
T 1lnz_A 282 NKMDMPEA-AENL----EAFKE---KLTD---DYPVFPISAVTREGLRE 319 (342)
T ss_dssp ECTTSTTH-HHHH----HHHHH---HCCS---CCCBCCCSSCCSSTTHH
T ss_pred ECccCCCC-HHHH----HHHHH---Hhhc---CCCEEEEECCCCcCHHH
Confidence 99999752 1222 22222 2221 15689999999999976
No 164
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.51 E-value=6.6e-14 Score=153.93 Aligned_cols=154 Identities=24% Similarity=0.235 Sum_probs=96.5
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCeE
Q 004209 340 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 419 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~~ 419 (768)
...|+|+|++|+|||||+++|++... ..+...++|.+.....+..++..
T Consensus 179 ~~~V~lvG~~naGKSTLln~L~~~~~-------------------------------~~~~~~~~T~d~~~~~i~~~g~~ 227 (364)
T 2qtf_A 179 IPSIGIVGYTNSGKTSLFNSLTGLTQ-------------------------------KVDTKLFTTMSPKRYAIPINNRK 227 (364)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHCC------------------------------------------CCSCEEEEEETTEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCCc-------------------------------cccCCcccccCCEEEEEEECCEE
Confidence 34699999999999999999994311 01122456777666677778889
Q ss_pred EEEEeCCCccc--------hHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHc---CCCeEEEEEec
Q 004209 420 VVVLDSPGHKD--------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNK 488 (768)
Q Consensus 420 i~lIDTPGh~~--------f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~l---gip~iIVVvNK 488 (768)
+.++||||+.+ .+..++..+..+|++++|+|++.+... ...+......++..+ ++| +|+|.||
T Consensus 228 v~l~DT~G~i~~lp~~lve~f~~tl~~~~~aD~il~VvD~s~~~~~-----~~~~~~~~~~~L~~l~~~~~p-~ilV~NK 301 (364)
T 2qtf_A 228 IMLVDTVGFIRGIPPQIVDAFFVTLSEAKYSDALILVIDSTFSENL-----LIETLQSSFEILREIGVSGKP-ILVTLNK 301 (364)
T ss_dssp EEEEECCCBCSSCCGGGHHHHHHHHHGGGGSSEEEEEEETTSCHHH-----HHHHHHHHHHHHHHHTCCSCC-EEEEEEC
T ss_pred EEEEeCCCchhcCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCcch-----HHHHHHHHHHHHHHhCcCCCC-EEEEEEC
Confidence 99999999622 135566778999999999999875200 012222233444443 456 8999999
Q ss_pred ccccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 489 MDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 489 mDlv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
+|+.+... ......+..+...+.. ...+++++||++|.|+.+
T Consensus 302 ~Dl~~~~~---~~~~~~~~~l~~~l~~--~~~~~~~~SA~~g~gi~~ 343 (364)
T 2qtf_A 302 IDKINGDL---YKKLDLVEKLSKELYS--PIFDVIPISALKRTNLEL 343 (364)
T ss_dssp GGGCCSCH---HHHHHHHHHHHHHHCS--CEEEEEECBTTTTBSHHH
T ss_pred CCCCCchH---HHHHHHHHHHHHHhcC--CCCcEEEEECCCCcCHHH
Confidence 99975321 1112222222233211 124679999999999976
No 165
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.50 E-value=1.1e-13 Score=147.86 Aligned_cols=153 Identities=16% Similarity=0.144 Sum_probs=97.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCe
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 418 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~ 418 (768)
..++|+++|.+|+|||||+++|++.. +. ....+++.+.....+..++.
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~--~~------------------------------~~~~~t~~~~~~~~~~~~~~ 201 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNA--FP------------------------------GEYIPTVFDNYSANVMVDGK 201 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSC--CC------------------------------CSCCCCSEEEEEEEEEETTE
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCC--CC------------------------------cccCCcccceeEEEEEECCE
Confidence 45899999999999999999998421 00 00122222322333444444
Q ss_pred --EEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHc--CCCeEEEEEeccccccc
Q 004209 419 --HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQY 494 (768)
Q Consensus 419 --~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~l--gip~iIVVvNKmDlv~~ 494 (768)
.+.||||||+++|...+...+..+|++|+|+|++.+. .+.. .....+..+... ++| +|+|+||+|+.+.
T Consensus 202 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~---~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~ 274 (332)
T 2wkq_A 202 PVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPA---SFHH---VRAKWYPEVRHHCPNTP-IILVGTKLDLRDD 274 (332)
T ss_dssp EEEEEEEEECCCGGGTTTGGGGCTTCSEEEEEEETTCHH---HHHH---HHHTHHHHHHHHCTTSC-EEEEEECHHHHTC
T ss_pred EEEEEEEeCCCchhhhHHHHHhccCCCEEEEEEeCCCHH---HHHH---HHHHHHHHHHhhCCCCc-EEEEEEchhcccc
Confidence 4559999999999877778888999999999998742 1111 001122333333 677 8999999999752
Q ss_pred chhhHHHH---------HHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 495 SKDRFDSI---------KVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 495 s~e~~~~i---------~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
....+.+ ..+...+.+..++ .+++++||++|.|+.+
T Consensus 275 -~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~Sa~~~~gi~~ 319 (332)
T 2wkq_A 275 -KDTIEKLKEKKLTPITYPQGLAMAKEIGA----VKYLECSALTQRGLKT 319 (332)
T ss_dssp -HHHHHHHHHTTCCCCCHHHHHHHHHHTTC----SEEEECCTTTCTTHHH
T ss_pred -cchhhhccccccccccHHHHHHHHHHcCC----cEEEEecCCCCcCHHH
Confidence 1111111 1223334444442 3789999999999976
No 166
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.50 E-value=9.8e-14 Score=142.69 Aligned_cols=147 Identities=16% Similarity=0.185 Sum_probs=90.4
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC
Q 004209 338 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 417 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~ 417 (768)
...++|+|+|++|+|||||+++|++..... ......++|.+.....+.+.+
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~-----------------------------~~~~~~~~t~~~~~~~~~~~~ 77 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKVFH-----------------------------SGTAAKSITKKCEKRSSSWKE 77 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCCSC-----------------------------C-------CCSCEEEEEEETT
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCcCc-----------------------------cCCCCCceeeeEEEEEEEeCC
Confidence 456899999999999999999999532110 001112566666667777889
Q ss_pred eEEEEEeCCCcc-----------chHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHH-----HcCCCe
Q 004209 418 YHVVVLDSPGHK-----------DFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR-----SFGVDQ 481 (768)
Q Consensus 418 ~~i~lIDTPGh~-----------~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~-----~lgip~ 481 (768)
..+.||||||+. .+...+......+|++|+|+|++... ....+.+..+. ....|
T Consensus 78 ~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~---------~~~~~~l~~~~~~~~~~~~~~- 147 (239)
T 3lxx_A 78 TELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYT---------EEEHKATEKILKMFGERARSF- 147 (239)
T ss_dssp EEEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCS---------SHHHHHHHHHHHHHHHHHGGG-
T ss_pred ceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCC---------HHHHHHHHHHHHHhhhhccce-
Confidence 999999999943 34555555667789999999987531 12222222221 23345
Q ss_pred EEEEEecccccccchhhHH----HHHHHHhHHHhhcCCCCCCCcEEEeecccC
Q 004209 482 LIVAVNKMDAVQYSKDRFD----SIKVQLGTFLRSCGFKDASLTWIPLSALEN 530 (768)
Q Consensus 482 iIVVvNKmDlv~~s~e~~~----~i~~el~~~lk~~g~~~~~i~~IpVSA~tG 530 (768)
+|||+||+|+... ..++ ...+.+..+++.++. .++++++..+
T Consensus 148 ~iiv~nK~D~~~~--~~~~~~i~~~~~~l~~l~~~~~~-----~~~~~~~~~~ 193 (239)
T 3lxx_A 148 MILIFTRKDDLGD--TNLHDYLREAPEDIQDLMDIFGD-----RYCALNNKAT 193 (239)
T ss_dssp EEEEEECGGGC--------------CHHHHHHHHHHSS-----SEEECCTTCC
T ss_pred EEEEEeCCccCCc--ccHHHHHHhchHHHHHHHHHcCC-----EEEEEECCCC
Confidence 8999999999752 2222 112356666777663 4566666543
No 167
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.49 E-value=7.7e-14 Score=138.69 Aligned_cols=150 Identities=16% Similarity=0.115 Sum_probs=85.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC-
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN- 417 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~- 417 (768)
..++|+++|.+|+|||||+++|++....+.... ..++.+.....+..++
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~ 54 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDX------------------------------EVLGEDTYERTLMVDGE 54 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSCCC----------------------------------GGGCTTEEEEEEEETTE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCcCCcCccc------------------------------cccceeEEEEEEEECCe
Confidence 458999999999999999999995433221110 0111111112233344
Q ss_pred -eEEEEEeCCCccchHH-HHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH----cCCCeEEEEEecccc
Q 004209 418 -YHVVVLDSPGHKDFVP-NMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS----FGVDQLIVAVNKMDA 491 (768)
Q Consensus 418 -~~i~lIDTPGh~~f~~-~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~----lgip~iIVVvNKmDl 491 (768)
..+.+|||+|...... ......+.+|++|+|+|.+.. .+|+. ..+.+..+.. .++| +|+|.||+|+
T Consensus 55 ~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~i~v~dv~~~---~s~~~----~~~~~~~l~~~~~~~~~p-iilV~NK~Dl 126 (192)
T 2cjw_A 55 SATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDR---ASFEK----ASELRIQLRRARQTEDIP-IILVGNKSDL 126 (192)
T ss_dssp EEEEEEECCCCC----CTTGGGHHHHCSEEEEEEETTCH---HHHHH----HHHHHHHHHHHTTTSCCC-EEEEEECTTC
T ss_pred EEEEEEEEeccCcchhhhHHHhhcccCCEEEEEEECCCH---HHHHH----HHHHHHHHHHhhCCCCCe-EEEEEechhh
Confidence 4567899999765211 122334669999999999863 12221 1122222222 3677 8999999998
Q ss_pred cccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 492 VQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 492 v~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
.....-.. .+...+....+ .+++++||++|.||.+
T Consensus 127 ~~~r~v~~----~~~~~~a~~~~-----~~~~e~SA~~g~~v~~ 161 (192)
T 2cjw_A 127 VRXREVSV----SEGRAXAVVFD-----XKFIETSAAVQHNVKE 161 (192)
T ss_dssp GGGCCSCH----HHHHHHHHHTT-----CEEEECBTTTTBSHHH
T ss_pred hccccccH----HHHHHHHHHhC-----CceEEeccccCCCHHH
Confidence 74211111 11112222222 4789999999999976
No 168
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.48 E-value=3.3e-14 Score=143.08 Aligned_cols=152 Identities=17% Similarity=0.174 Sum_probs=85.0
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC
Q 004209 338 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 417 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~ 417 (768)
...++|+++|++|+|||||+++|++..-.. ......++++.+ ...
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~----------------------------~~~~~~~~~~~~-------~~~ 54 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRP----------------------------TVVSQEPLSAAD-------YDG 54 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCC----------------------------BCCCSSCEEETT-------GGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCC----------------------------eeeecCceEEEE-------eeC
Confidence 356899999999999999999999532100 000011111111 155
Q ss_pred eEEEEEeCCCccchHHHHHHhccc----CCEEEEEEecC-CCccccccccchhhhHHHHHHHHH---cCCCeEEEEEecc
Q 004209 418 YHVVVLDSPGHKDFVPNMISGATQ----SDAAILVIDAS-VGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKM 489 (768)
Q Consensus 418 ~~i~lIDTPGh~~f~~~~i~g~~~----aD~aILVVDA~-~g~~e~~~~~~~~qt~e~l~ll~~---lgip~iIVVvNKm 489 (768)
..+.||||||+.+|...+...+.. +|++|+|+|++ .. ..|.....+..+.+..... .++| +++|+||+
T Consensus 55 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~ 130 (218)
T 1nrj_B 55 SGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDP---KKLTTTAEFLVDILSITESSCENGID-ILIACNKS 130 (218)
T ss_dssp SSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCT---TCCHHHHHHHHHHHHHHHHHSTTCCC-EEEEEECT
T ss_pred ceEEEEECCCcHHHHHHHHHHHHhccccCCEEEEEEECCCCh---HHHHHHHHHHHHHHhcccccccCCCC-EEEEEEch
Confidence 679999999999987777666665 89999999998 32 1222111122222221111 3677 89999999
Q ss_pred cccccch--hhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCc
Q 004209 490 DAVQYSK--DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNL 533 (768)
Q Consensus 490 Dlv~~s~--e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI 533 (768)
|+..... +..+.+.+++..+....+ .+++++||++|.+-
T Consensus 131 Dl~~~~~~~~~~~~l~~~~~~~~~~~~-----~~~~~~Sa~~~~~~ 171 (218)
T 1nrj_B 131 ELFTARPPSKIKDALESEIQKVIERRK-----KSLNEVERKINEED 171 (218)
T ss_dssp TSTTCCCHHHHHHHHHHHHHHHHHHHH-----HHHHC---------
T ss_pred HhcccCCHHHHHHHHHHHHHHHHHHHh-----cccccccccccccc
Confidence 9986321 112223333444433322 46789999999864
No 169
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.47 E-value=8.1e-14 Score=136.98 Aligned_cols=157 Identities=20% Similarity=0.205 Sum_probs=89.1
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEe-----
Q 004209 340 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD----- 414 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~----- 414 (768)
.++|+++|.+|+|||||+++|++...... .+..+.+.++.....+.
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~-----------------------------~~~~~t~g~~~~~~~~~~~~~~ 52 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDL-----------------------------GMQSATVGIDVKDWPIQIRDKR 52 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC----------------------------------------CSEEEEEEEC------
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccC-----------------------------CCcceeccEEeEEeeeccccCC
Confidence 36899999999999999999984211100 00011122222222221
Q ss_pred eCCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH--cCCCeEEEEEeccccc
Q 004209 415 SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAV 492 (768)
Q Consensus 415 ~~~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~--lgip~iIVVvNKmDlv 492 (768)
.....+.||||||+++|.......+..+|++++|+|.+.+. ..++. ....+..+.. .++| +|+|.||+|+.
T Consensus 53 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~--~s~~~----~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 125 (184)
T 2zej_A 53 KRDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQ--AEVDA----MKPWLFNIKARASSSP-VILVGTHLDVS 125 (184)
T ss_dssp ---CEEEEEEECSHHHHHTTSHHHHHHSEEEEEEEEGGGCH--HHHHT----HHHHHHHHHHHCTTCE-EEEEEECGGGC
T ss_pred CCceEEEEEecCCCHHHHHhhHHHccCCcEEEEEEeCCcch--hHHHH----HHHHHHHHHhhCCCCc-EEEEEECCCcc
Confidence 14568999999999888766566677899999999998751 11211 1222222222 2565 88899999997
Q ss_pred ccchhhHHHH-HHHHhHHHhhcCCCCCCCcEEEeecccCC-Cccc
Q 004209 493 QYSKDRFDSI-KVQLGTFLRSCGFKDASLTWIPLSALENQ-NLVT 535 (768)
Q Consensus 493 ~~s~e~~~~i-~~el~~~lk~~g~~~~~i~~IpVSA~tG~-gI~e 535 (768)
+. ...... ......+.+..++. ...+++++||++|. |+.+
T Consensus 126 ~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~~~~~ 167 (184)
T 2zej_A 126 DE--KQRKACMSKITKELLNKRGFP-AIRDYHFVNATEESDALAK 167 (184)
T ss_dssp CH--HHHHHHHHHHHHHTTTCTTSC-EEEEEEECCTTSCCHHHHH
T ss_pred cc--hhhHHHHHHHHHHHHHhcCCc-chhheEEEecccCchhHHH
Confidence 42 222111 12222333333331 01138999999996 8865
No 170
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.47 E-value=1e-13 Score=146.52 Aligned_cols=104 Identities=16% Similarity=0.147 Sum_probs=65.1
Q ss_pred CeEEEEEeCCCcc-------------chHHHHHHhcccCCEEE-EEEecCCCccccccccchhhh-HHHHHHHHHcCCCe
Q 004209 417 NYHVVVLDSPGHK-------------DFVPNMISGATQSDAAI-LVIDASVGSFEVGMNTAKGLT-REHAQLIRSFGVDQ 481 (768)
Q Consensus 417 ~~~i~lIDTPGh~-------------~f~~~~i~g~~~aD~aI-LVVDA~~g~~e~~~~~~~~qt-~e~l~ll~~lgip~ 481 (768)
...++||||||+. .+...+..++..++.+| +|+|++.+. ..+. ...+..+...+.|
T Consensus 124 ~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~--------~~~~~~~~~~~~~~~~~~- 194 (299)
T 2aka_B 124 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDL--------ANSDALKIAKEVDPQGQR- 194 (299)
T ss_dssp CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCG--------GGCHHHHHHHHHCTTCSS-
T ss_pred CCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcch--------hhhHHHHHHHHhCCCCCe-
Confidence 5789999999964 34444566777888776 689998753 2232 2344445556777
Q ss_pred EEEEEecccccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 482 LIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 482 iIVVvNKmDlv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
+|+|+||+|+.+......+ .+...+. .+.....+++++||++|.|+.+
T Consensus 195 ~i~V~NK~Dl~~~~~~~~~----~~~~~~~--~~~~~~~~v~~~SA~~~~gi~~ 242 (299)
T 2aka_B 195 TIGVITKLDLMDEGTDARD----VLENKLL--PLRRGYIGVVNRSQKDIDGKKD 242 (299)
T ss_dssp EEEEEECGGGSCTTCCCHH----HHTTCSS--CCTTCEEECCCCCCBCTTSCBC
T ss_pred EEEEEEccccCCCCchHHH----HHhCCcC--cCCCCcEEEECCChhhcccccc
Confidence 8999999999863221111 1111111 1111123678999999999966
No 171
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.47 E-value=3e-13 Score=148.02 Aligned_cols=149 Identities=23% Similarity=0.297 Sum_probs=95.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCe
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 418 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~ 418 (768)
..++|+++|++|+|||||+++|++.... ....+++|.+.....+...+.
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~~~-------------------------------~~~~~~~t~~~~~~~~~~~~~ 214 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAKPE-------------------------------IASYPFTTRGINVGQFEDGYF 214 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSCCE-------------------------------EECCTTCSSCEEEEEEEETTE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCc-------------------------------cCCCCCeeeceeEEEEEecCc
Confidence 5679999999999999999999843210 011234555555566666788
Q ss_pred EEEEEeCCCccchH--------HHHH-HhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHH-Hc-CCCeEEEEEe
Q 004209 419 HVVVLDSPGHKDFV--------PNMI-SGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR-SF-GVDQLIVAVN 487 (768)
Q Consensus 419 ~i~lIDTPGh~~f~--------~~~i-~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~-~l-gip~iIVVvN 487 (768)
.+.+|||||+.++. ...+ .....+|++|+|+|++.+. +++ ...+ .+.+..+. .. +.| +|+|+|
T Consensus 215 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~---~~~-~~~~-~~~~~~i~~~~~~~p-iilV~N 288 (357)
T 2e87_A 215 RYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHC---GFP-LEEQ-IHLFEEVHGEFKDLP-FLVVIN 288 (357)
T ss_dssp EEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTT---SSC-HHHH-HHHHHHHHHHTTTSC-EEEEEC
T ss_pred eEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccc---cCC-HHHH-HHHHHHHHHhcCCCC-EEEEEE
Confidence 99999999975431 1222 2334699999999987641 111 1112 22222222 23 677 899999
Q ss_pred cccccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 488 KMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 488 KmDlv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
|+|+... ..++ ++..+++..+ ++++++||++|+|+.+
T Consensus 289 K~Dl~~~--~~~~----~~~~~~~~~~-----~~~~~iSA~~g~gi~~ 325 (357)
T 2e87_A 289 KIDVADE--ENIK----RLEKFVKEKG-----LNPIKISALKGTGIDL 325 (357)
T ss_dssp CTTTCCH--HHHH----HHHHHHHHTT-----CCCEECBTTTTBTHHH
T ss_pred CcccCCh--HHHH----HHHHHHHhcC-----CCeEEEeCCCCcCHHH
Confidence 9999752 2222 2233333332 4689999999999976
No 172
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.47 E-value=2.9e-13 Score=142.19 Aligned_cols=184 Identities=18% Similarity=0.185 Sum_probs=103.4
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC
Q 004209 338 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 417 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~ 417 (768)
...++|+++|++|+|||||+|+|++..... .....++|.......+...+
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~------------------------------~~~~~~~t~~~~~~~~~~~~ 86 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVS------------------------------ISPFQSEGPRPVMVSRSRAG 86 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSC------------------------------CCSSSCCCSSCEEEEEEETT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccc------------------------------ccCCCCcceeeEEEEEeeCC
Confidence 346899999999999999999999532110 01124455555555667788
Q ss_pred eEEEEEeCCCccchH-------HHHHHh--cccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH-cCC---CeEEE
Q 004209 418 YHVVVLDSPGHKDFV-------PNMISG--ATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-FGV---DQLIV 484 (768)
Q Consensus 418 ~~i~lIDTPGh~~f~-------~~~i~g--~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~-lgi---p~iIV 484 (768)
..++||||||+.++. ..+... ...+|++|+|+|++... + .....+.+..+.. ++. .++|+
T Consensus 87 ~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~----~---~~~~~~~~~~l~~~~~~~~~~~iiv 159 (270)
T 1h65_A 87 FTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYR----V---DNLDKLVAKAITDSFGKGIWNKAIV 159 (270)
T ss_dssp EEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCC----C---CHHHHHHHHHHHHHHCGGGGGGEEE
T ss_pred eEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCCc----C---CHHHHHHHHHHHHHhCcccccCEEE
Confidence 999999999987653 222222 23699999998886532 1 1233344444432 342 23899
Q ss_pred EEecccccccchhhHHHH----HHHHhHHHhh-cCCCC-CCCcEEEeecccCCCcccCC--C---CcccccccCCcchhh
Q 004209 485 AVNKMDAVQYSKDRFDSI----KVQLGTFLRS-CGFKD-ASLTWIPLSALENQNLVTAP--D---DGRLLSWYKGPCLLD 553 (768)
Q Consensus 485 VvNKmDlv~~s~e~~~~i----~~el~~~lk~-~g~~~-~~i~~IpVSA~tG~gI~e~~--~---~~~~~~wy~G~~LLe 553 (768)
|+||+|+.......+++. ...+...++. .++.. .....+|++...+.+..... . ..+..+|+. .|++
T Consensus 160 V~nK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~v~~~~~~~~~~~~~~v~~~~~~w~~--~Ll~ 237 (270)
T 1h65_A 160 ALTHAQFSPPDGLPYDEFFSKRSEALLQVVRSGASLKKDAQASDIPVVLIENSGRCNKNDSDEKVLPNGIAWIP--HLVQ 237 (270)
T ss_dssp EEECCSCCCGGGCCHHHHHHHHHHHHHHHHHHHTTCCTTSGGGCCCEEECCCCTTCCBCTTSCBBCTTSCBHHH--HHHH
T ss_pred EEECcccCCcCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCEEEEeCCCcccccCCCceECCCCCCcHH--HHHH
Confidence 999999975432233333 3444444332 22210 01122455555444321100 0 113457754 7888
Q ss_pred hhhccCC
Q 004209 554 AIDSLRP 560 (768)
Q Consensus 554 ~L~~l~~ 560 (768)
.|..+..
T Consensus 238 ~l~~~~~ 244 (270)
T 1h65_A 238 TITEVAL 244 (270)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 8866543
No 173
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.47 E-value=5.9e-14 Score=146.94 Aligned_cols=126 Identities=13% Similarity=0.125 Sum_probs=81.5
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC
Q 004209 338 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 417 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~ 417 (768)
+..++|+++|++|+|||||+++|++..... ....+++|.......+..++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~------------------------------~~~~~~~t~~~~~~~~~~~~ 83 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVR------------------------------VSPFQAEGLRPVMVSRTMGG 83 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSC------------------------------CCSSCC-CCCCEEEEEEETT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcc------------------------------cCCCCCcceeeEEEEEEECC
Confidence 457999999999999999999999532111 11225566666666777889
Q ss_pred eEEEEEeCCCccchH-------HHHHHhc--ccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH-cC---CCeEEE
Q 004209 418 YHVVVLDSPGHKDFV-------PNMISGA--TQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-FG---VDQLIV 484 (768)
Q Consensus 418 ~~i~lIDTPGh~~f~-------~~~i~g~--~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~-lg---ip~iIV 484 (768)
..++||||||+.+|. ..+...+ ..+|++|+|+|++...+ .....+.+..+.. .+ ..++++
T Consensus 84 ~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~-------~~~~~~~~~~l~~~~~~~~~~~~iv 156 (262)
T 3def_A 84 FTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAV-------DELDKQVVIAITQTFGKEIWCKTLL 156 (262)
T ss_dssp EEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSCC-------CHHHHHHHHHHHHHHCGGGGGGEEE
T ss_pred eeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCCC-------CHHHHHHHHHHHHHhchhhhcCEEE
Confidence 999999999987752 2222222 26899999988875321 1222333433333 23 124899
Q ss_pred EEecccccccchhhHH
Q 004209 485 AVNKMDAVQYSKDRFD 500 (768)
Q Consensus 485 VvNKmDlv~~s~e~~~ 500 (768)
|+||+|+.......++
T Consensus 157 v~nK~Dl~~~~~~~~e 172 (262)
T 3def_A 157 VLTHAQFSPPDELSYE 172 (262)
T ss_dssp EEECTTCCCSTTCCHH
T ss_pred EEeCcccCCCCCccHH
Confidence 9999999643333333
No 174
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.44 E-value=1.2e-13 Score=159.20 Aligned_cols=149 Identities=16% Similarity=0.191 Sum_probs=91.3
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEE----EE
Q 004209 338 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVA----YF 413 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~----~~ 413 (768)
...++|+++|.+|+|||||+++|++..- ... .....|.++..... .+
T Consensus 39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~--~~~---------------------------~~~t~g~~~~~~~~~~~~~v 89 (535)
T 3dpu_A 39 LQEIKVHLIGDGMAGKTSLLKQLIGETF--DPK---------------------------ESQTHGLNVVTKQAPNIKGL 89 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC----------------------------------------CCCEEEEEGGGSGGG
T ss_pred ccceEEEEECCCCCCHHHHHHHHhcCCC--CCC---------------------------CCCccceEEEEeccccccce
Confidence 4568999999999999999999994210 000 00001111111000 01
Q ss_pred ----eeCCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcC--CCeEEEEEe
Q 004209 414 ----DSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFG--VDQLIVAVN 487 (768)
Q Consensus 414 ----~~~~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lg--ip~iIVVvN 487 (768)
...+..+.||||||++.|.......+..+|++|+|+|++.. ......+..+...+ +| +|||+|
T Consensus 90 ~~~~~~~~~~~~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~----------~~~~~~~~~l~~~~~~~p-vilV~N 158 (535)
T 3dpu_A 90 ENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTD----------SNKHYWLRHIEKYGGKSP-VIVVMN 158 (535)
T ss_dssp TTCSTTTTCEEEEECCCSCCTTTTTCHHHHHSSEEEEEEECGGGG----------GGHHHHHHHHHHHSSSCC-EEEEEC
T ss_pred eecCCCceEEEEEEECCcHHHHHHHHHHHccCCcEEEEEEeCCCc----------hhHHHHHHHHHHhCCCCC-EEEEEE
Confidence 12357899999999988877666677889999999999753 23344445555544 77 899999
Q ss_pred cccccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 488 KMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 488 KmDlv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
|+|+........ +++...+...+ .+++++||++|.|+.+
T Consensus 159 K~Dl~~~~~v~~----~~~~~~~~~~~-----~~~~~vSA~~g~gi~e 197 (535)
T 3dpu_A 159 KIDENPSYNIEQ----KKINERFPAIE-----NRFHRISCKNGDGVES 197 (535)
T ss_dssp CTTTCTTCCCCH----HHHHHHCGGGT-----TCEEECCC-----CTT
T ss_pred CCCcccccccCH----HHHHHHHHhcC-----CceEEEecCcccCHHH
Confidence 999975322111 23344444434 4689999999999976
No 175
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.43 E-value=6.6e-13 Score=132.57 Aligned_cols=151 Identities=14% Similarity=0.166 Sum_probs=91.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCe
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 418 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~ 418 (768)
...+|+++|++|+|||||+++|++.... .......|+|.......+ .+
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~~-----------------------------~~~~~~~G~~~~~~~~~~--~~- 72 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQKSL-----------------------------ARTSKTPGRTQLINLFEV--AD- 72 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC------------------------------------------CCEEEEEE--ET-
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcc-----------------------------ccccCCCccceeeEEEEe--cC-
Confidence 3578999999999999999999842100 000112455554333222 23
Q ss_pred EEEEEeCCCccc----------hHH---HHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEE
Q 004209 419 HVVVLDSPGHKD----------FVP---NMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVA 485 (768)
Q Consensus 419 ~i~lIDTPGh~~----------f~~---~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVV 485 (768)
.+.|+||||+.. |.. ........+|.+++|+|+..+. .....+...++...++| +++|
T Consensus 73 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~--------~~~~~~~~~~~~~~~~~-~~~v 143 (210)
T 1pui_A 73 GKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPL--------KDLDQQMIEWAVDSNIA-VLVL 143 (210)
T ss_dssp TEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCC--------CHHHHHHHHHHHHTTCC-EEEE
T ss_pred CEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCC--------chhHHHHHHHHHHcCCC-eEEE
Confidence 688999999742 222 2222335689999999998753 12233455566678888 7888
Q ss_pred EecccccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 486 VNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 486 vNKmDlv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
.||+|+... ...+.....+..++...+ ..+.++|+||+++.|+.+
T Consensus 144 ~nK~D~~s~--~~~~~~~~~~~~~~~~~~---~~~~~~~~Sal~~~~~~~ 188 (210)
T 1pui_A 144 LTKADKLAS--GARKAQLNMVREAVLAFN---GDVQVETFSSLKKQGVDK 188 (210)
T ss_dssp EECGGGSCH--HHHHHHHHHHHHHHGGGC---SCEEEEECBTTTTBSHHH
T ss_pred EecccCCCc--hhHHHHHHHHHHHHHhcC---CCCceEEEeecCCCCHHH
Confidence 999998752 211122334444444433 135789999999999976
No 176
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.41 E-value=1.1e-12 Score=130.62 Aligned_cols=148 Identities=18% Similarity=0.193 Sum_probs=92.5
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC--
Q 004209 340 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN-- 417 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~-- 417 (768)
.++|+++|+.|+|||||+++|++..-. .+..+.++.+.....+..++
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~-------------------------------~~~~~t~~~~~~~~~i~~~g~~ 53 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFN-------------------------------LESKSTIGVEFATRSIQVDGKT 53 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCC-------------------------------C---CCCSCEEEEEEEEETTEE
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCC-------------------------------CCCCCccceeEEEEEEEECCEE
Confidence 479999999999999999999953111 01112222333333344444
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH---cCCCeEEEEEeccccccc
Q 004209 418 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQY 494 (768)
Q Consensus 418 ~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~---lgip~iIVVvNKmDlv~~ 494 (768)
..+.||||||+++|..........+|++|+|+|+.... .+ ......+..+.. .+.| +++|+||+|+...
T Consensus 54 ~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~----~~~~~~~~~~~~~~~~~~~-i~~v~nK~Dl~~~ 125 (199)
T 2f9l_A 54 IKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHL---TY----ENVERWLKELRDHADSNIV-IMLVGNKSDLRHL 125 (199)
T ss_dssp EEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTCHH---HH----HTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGG
T ss_pred EEEEEEECCCchhhhhhhHHHHhcCCEEEEEEECcCHH---HH----HHHHHHHHHHHHhcCCCCe-EEEEEECcccccc
Confidence 46778999999887655555667899999999998642 11 111222222222 2444 8999999999753
Q ss_pred chhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 495 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 495 s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
.....+ +...++...+ +.++.+||+++.|+.+
T Consensus 126 ~~~~~~----~a~~l~~~~~-----~~~~d~Sal~~~~i~~ 157 (199)
T 2f9l_A 126 RAVPTD----EARAFAEKNN-----LSFIETSALDSTNVEE 157 (199)
T ss_dssp CCSCHH----HHHHHHHHTT-----CEEEECCTTTCTTHHH
T ss_pred cCcCHH----HHHHHHHHcC-----CeEEEEeCCCCCCHHH
Confidence 221111 2233333333 5789999999999976
No 177
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.40 E-value=2.1e-13 Score=145.58 Aligned_cols=71 Identities=14% Similarity=0.192 Sum_probs=51.1
Q ss_pred CCeEEEEEeCCCccc-------------hHHHHHHhcccCCEEEEEEecC-CCccccccccchhhhHHHHHHHHHcCCCe
Q 004209 416 KNYHVVVLDSPGHKD-------------FVPNMISGATQSDAAILVIDAS-VGSFEVGMNTAKGLTREHAQLIRSFGVDQ 481 (768)
Q Consensus 416 ~~~~i~lIDTPGh~~-------------f~~~~i~g~~~aD~aILVVDA~-~g~~e~~~~~~~~qt~e~l~ll~~lgip~ 481 (768)
.+..++||||||+.+ +...+..++..+|++|+|+|+. .+.. ..+....+..+...+.|
T Consensus 129 ~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~-------~~~~~~i~~~~~~~~~~- 200 (315)
T 1jwy_B 129 HVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLA-------NSDALQLAKEVDPEGKR- 200 (315)
T ss_dssp TSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCST-------TCSHHHHHHHHCSSCSS-
T ss_pred CCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchh-------hhHHHHHHHHhCCCCCc-
Confidence 557899999999754 5556677788999999999974 3321 11223555556666787
Q ss_pred EEEEEeccccccc
Q 004209 482 LIVAVNKMDAVQY 494 (768)
Q Consensus 482 iIVVvNKmDlv~~ 494 (768)
+|+|+||+|+...
T Consensus 201 ~i~v~NK~Dl~~~ 213 (315)
T 1jwy_B 201 TIGVITKLDLMDK 213 (315)
T ss_dssp EEEEEECTTSSCS
T ss_pred EEEEEcCcccCCc
Confidence 8999999999863
No 178
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.38 E-value=1.6e-12 Score=154.30 Aligned_cols=109 Identities=21% Similarity=0.227 Sum_probs=68.7
Q ss_pred eEEEEEeCCCccc---hHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHH-HHHHcCCCeEEEEEecccccc
Q 004209 418 YHVVVLDSPGHKD---FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQ-LIRSFGVDQLIVAVNKMDAVQ 493 (768)
Q Consensus 418 ~~i~lIDTPGh~~---f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~-ll~~lgip~iIVVvNKmDlv~ 493 (768)
..++||||||+.+ ....+...+..+|++|+|+|++.+. .....+.+. .+...+.| +++|+||+|+..
T Consensus 174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~--------s~~e~~~l~~~l~~~~~~-iiiVlNK~Dl~~ 244 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPC--------TLGERRYLENYIKGRGLT-VFFLVNAWDQVR 244 (695)
T ss_dssp TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTT--------CHHHHHHHHHHTTTSCCC-EEEEEECGGGGG
T ss_pred CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCcc--------chhHHHHHHHHHHhhCCC-EEEEEECccccc
Confidence 4699999999665 4455667778899999999998763 123333332 33445777 899999999975
Q ss_pred cc---hh---hHHHHHHHHh----HHHhhc----CCCCCCCcEEEeecc--------------cCCCccc
Q 004209 494 YS---KD---RFDSIKVQLG----TFLRSC----GFKDASLTWIPLSAL--------------ENQNLVT 535 (768)
Q Consensus 494 ~s---~e---~~~~i~~el~----~~lk~~----g~~~~~i~~IpVSA~--------------tG~gI~e 535 (768)
.. .+ .++.+...+. ..+... |+.....+++++||+ +|.|+.+
T Consensus 245 ~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~ 314 (695)
T 2j69_A 245 ESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPK 314 (695)
T ss_dssp GGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHH
T ss_pred ccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHH
Confidence 32 11 2222222222 222211 222223578999999 8988866
No 179
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.37 E-value=2.6e-13 Score=133.47 Aligned_cols=130 Identities=21% Similarity=0.202 Sum_probs=74.8
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC
Q 004209 338 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 417 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~ 417 (768)
...++|+++|..|+|||||+++|++..... . .....++++.+ ...
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~---~-------------------------~~~~~~~~~~~-------~~~ 90 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRP---T-------------------------VVSQEPLSAAD-------YDG 90 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC----------------------------------------C-------CCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCc---c-------------------------cccCCCceeee-------ecC
Confidence 456899999999999999999999532100 0 00011122211 156
Q ss_pred eEEEEEeCCCccchHHHHHHhcc----cCCEEEEEEecC-CCccccccccchhhhHHHHHHHHH---cCCCeEEEEEecc
Q 004209 418 YHVVVLDSPGHKDFVPNMISGAT----QSDAAILVIDAS-VGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKM 489 (768)
Q Consensus 418 ~~i~lIDTPGh~~f~~~~i~g~~----~aD~aILVVDA~-~g~~e~~~~~~~~qt~e~l~ll~~---lgip~iIVVvNKm 489 (768)
..+.||||||+.+|...+...+. .+|++|+|+|++ .. ..+........+.+..... .++| +++|+||+
T Consensus 91 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~ 166 (193)
T 2ged_A 91 SGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDP---KKLTTTAEFLVDILSITESSCENGID-ILIACNKS 166 (193)
T ss_dssp TTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCH---HHHHHHHHHHHHHHHHHHHHSTTCCC-EEEEEECT
T ss_pred CeEEEEECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCCc---hhHHHHHHHHHHHHhhhhhccccCCC-EEEEEEch
Confidence 78999999999887544444443 489999999998 32 1111111111111111111 2677 89999999
Q ss_pred cccccchhhHHHHHHHHhH
Q 004209 490 DAVQYSKDRFDSIKVQLGT 508 (768)
Q Consensus 490 Dlv~~s~e~~~~i~~el~~ 508 (768)
|+.+. ...+++.+.+..
T Consensus 167 Dl~~~--~~~~~~~~~l~~ 183 (193)
T 2ged_A 167 ELFTA--RPPSKIKDALES 183 (193)
T ss_dssp TSTTC--CCHHHHHHHHHH
T ss_pred HhcCC--CCHHHHHHHHHH
Confidence 99853 223344444443
No 180
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.36 E-value=9e-13 Score=146.53 Aligned_cols=83 Identities=19% Similarity=0.155 Sum_probs=46.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEE--Ee----
Q 004209 341 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAY--FD---- 414 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~--~~---- 414 (768)
++|+|+|++|+|||||+|+|++.. ... ...+++|++..... +.
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~-~~~------------------------------~~~p~tT~~~~~g~~~~~~~~~ 49 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVD-VEI------------------------------ANYPFTTIEANVGVTYAITDHP 49 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC---------------------------------------------CCEEEEEEEEECS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-Ccc------------------------------cCCCCcccCCceEEEeeccCCc
Confidence 479999999999999999999532 110 01133444322221 11
Q ss_pred ---------------eC---CeEEEEEeCCCccchH-------HHHHHhcccCCEEEEEEecCCC
Q 004209 415 ---------------SK---NYHVVVLDSPGHKDFV-------PNMISGATQSDAAILVIDASVG 454 (768)
Q Consensus 415 ---------------~~---~~~i~lIDTPGh~~f~-------~~~i~g~~~aD~aILVVDA~~g 454 (768)
.. ...+.||||||+.+.. ...+..++.+|++|+|+|++.+
T Consensus 50 ~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 50 CKELGCSPNPQNYEYRNGLALIPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp CSSSCCSCCCSSSCEETTEEEEEEEEEECC---------------CCCSSTTCSEEEEEEETTCC
T ss_pred hHHhhhhcccccccccCCcceEEEEEEECCCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 11 2579999999976421 2223456889999999999875
No 181
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.34 E-value=5.8e-12 Score=124.82 Aligned_cols=149 Identities=18% Similarity=0.186 Sum_probs=93.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCe
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 418 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~ 418 (768)
..++|+++|..|+|||||+++|++.... ....+.++.+.....+..++.
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~-------------------------------~~~~~t~~~~~~~~~i~~~g~ 76 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNEFN-------------------------------LESKSTIGVEFATRSIQVDGK 76 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCCC-------------------------------CSCCCCCSEEEEEEEEEETTE
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCC-------------------------------CCCCCccceEEEEEEEEECCE
Confidence 4589999999999999999999953111 111133333333344444554
Q ss_pred --EEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH---cCCCeEEEEEecccccc
Q 004209 419 --HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQ 493 (768)
Q Consensus 419 --~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~---lgip~iIVVvNKmDlv~ 493 (768)
.+.+|||||+++|...+......++.+|+|+|..... .++ .....+..+.. ...+ +++|+||+|+.+
T Consensus 77 ~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~----~~~~~~~~~~~~~~~~~~-i~~v~nK~Dl~~ 148 (191)
T 1oix_A 77 TIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHL---TYE----NVERWLKELRDHADSNIV-IMLVGNKSDLRH 148 (191)
T ss_dssp EEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEETTCHH---HHH----THHHHHHHHHHHSCTTCE-EEEEEECGGGGG
T ss_pred EEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEECcCHH---HHH----HHHHHHHHHHHhcCCCCc-EEEEEECccccc
Confidence 4567999999887665556667899999999987631 111 11112222222 2344 899999999975
Q ss_pred cchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 494 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 494 ~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
......+ ....+.... .+.++.+||+++.|+.+
T Consensus 149 ~~~~~~~----~a~~l~~~~-----~~~~ld~Sald~~~v~~ 181 (191)
T 1oix_A 149 LRAVPTD----EARAFAEKN-----GLSFIETSALDSTNVEA 181 (191)
T ss_dssp GCCSCHH----HHHHHHHHT-----TCEEEECCTTTCTTHHH
T ss_pred ccccCHH----HHHHHHHHc-----CCEEEEEeCCCCCCHHH
Confidence 3221111 223333333 35789999999999966
No 182
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.34 E-value=3.3e-13 Score=140.79 Aligned_cols=83 Identities=20% Similarity=0.152 Sum_probs=49.0
Q ss_pred cCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccchhhHHHHHHHHhHHHhhcCCCCCCC
Q 004209 441 QSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASL 520 (768)
Q Consensus 441 ~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~e~~~~i~~el~~~lk~~g~~~~~i 520 (768)
.||++|+|+|++... ...|+.+..+..+........++| +|||+||+|+.. .... ++...+.+.. ..+
T Consensus 162 ~ad~vilV~D~t~~~-~~s~~~~~~~l~~i~~~~~~~~~p-iilV~NK~Dl~~--~~~v----~~~~~~~~~~----~~~ 229 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGM-NRNFDDQLKFVSNLYNQLAKTKKP-IVVVLTKCDEGV--ERYI----RDAHTFALSK----KNL 229 (255)
T ss_dssp ECCEEEEEEECBC-----CHHHHHHHHHHHHHHHHHTTCC-EEEEEECGGGBC--HHHH----HHHHHHHHTS----SSC
T ss_pred cCCEEEEEEECCCCc-hhhHHHHHHHHHHHHHHhccCCCC-EEEEEEcccccc--cHHH----HHHHHHHHhc----CCC
Confidence 699999999998740 012222211222222222234677 899999999964 2222 2334443321 135
Q ss_pred cEEEeecccCCCccc
Q 004209 521 TWIPLSALENQNLVT 535 (768)
Q Consensus 521 ~~IpVSA~tG~gI~e 535 (768)
+++++||++|.|+.+
T Consensus 230 ~~~e~SAk~g~gv~e 244 (255)
T 3c5h_A 230 QVVETSARSNVNVDL 244 (255)
T ss_dssp CEEECBTTTTBSHHH
T ss_pred eEEEEECCCCCCHHH
Confidence 789999999999976
No 183
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.32 E-value=2.6e-12 Score=140.67 Aligned_cols=103 Identities=19% Similarity=0.213 Sum_probs=67.6
Q ss_pred eCCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEeccccccc
Q 004209 415 SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 494 (768)
Q Consensus 415 ~~~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~ 494 (768)
..++.++||||||...-. ...+..+|++|+|+|+..+... ..+.. ..+.+| ++||+||+|+.+
T Consensus 169 ~~~~~~iiiDTpGi~~~~---~~~~~~aD~vl~V~d~~~~~~~---~~l~~---------~~~~~p-~ivVlNK~Dl~~- 231 (355)
T 3p32_A 169 AAGFDVILIETVGVGQSE---VAVANMVDTFVLLTLARTGDQL---QGIKK---------GVLELA-DIVVVNKADGEH- 231 (355)
T ss_dssp HTTCCEEEEEECSCSSHH---HHHHTTCSEEEEEEESSTTCTT---TTCCT---------TSGGGC-SEEEEECCCGGG-
T ss_pred hCCCCEEEEeCCCCCcHH---HHHHHhCCEEEEEECCCCCccH---HHHHH---------hHhhcC-CEEEEECCCCcC-
Confidence 367899999999965432 2234789999999998765311 11110 112346 689999999975
Q ss_pred chhhHHHHHHHHhHHHhhcCCCC--CCCcEEEeecccCCCccc
Q 004209 495 SKDRFDSIKVQLGTFLRSCGFKD--ASLTWIPLSALENQNLVT 535 (768)
Q Consensus 495 s~e~~~~i~~el~~~lk~~g~~~--~~i~~IpVSA~tG~gI~e 535 (768)
.........++...+..+.... ...+++++||++|+|+.+
T Consensus 232 -~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~ 273 (355)
T 3p32_A 232 -HKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAE 273 (355)
T ss_dssp -HHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHH
T ss_pred -hhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHH
Confidence 3344555566666654443211 135799999999999976
No 184
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.28 E-value=2.8e-12 Score=138.45 Aligned_cols=155 Identities=14% Similarity=0.178 Sum_probs=95.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCeEEE
Q 004209 342 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 421 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~~i~ 421 (768)
||+++|..|+|||||+.++.+... .. .....+.|+.+....+. ....+.
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~---~~---------------------------~~~~~~~Tig~~~~~v~-~~v~Lq 49 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQ---PL---------------------------DTLYLESTSNPSLEHFS-TLIDLA 49 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCC---SG---------------------------GGTTCCCCCSCCCEEEC-SSSCEE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCC---CC---------------------------ccceecCeeeeeeEEEc-cEEEEE
Confidence 589999999999999998763210 00 00011223322222232 347899
Q ss_pred EEeCCCccchHH---HHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH--cCCCeEEEEEecccccccch
Q 004209 422 VLDSPGHKDFVP---NMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQYSK 496 (768)
Q Consensus 422 lIDTPGh~~f~~---~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~--lgip~iIVVvNKmDlv~~s~ 496 (768)
||||||+++|.. .+...++.++++|+|+|++.. +...+ ....+.+..+.. -++| +++|.||+|+... .
T Consensus 50 IWDTAGQErf~~~~l~~~~yyr~a~~~IlV~Ditd~-~~~~~----~~l~~~l~~~~~~~~~ip-illvgNK~DL~~~-~ 122 (331)
T 3r7w_B 50 VMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQDE-YINAI----TNLAMIIEYAYKVNPSIN-IEVLIHKVDGLSE-D 122 (331)
T ss_dssp EEECCSCSSSCCCSHHHHHHHTTCSEEEEECCCSSC-TTHHH----HHHHHHHHHHHHHCTTCE-EEEECCCCCSSCS-H
T ss_pred EEECCCchhccchhhhhhhhccCCCEEEEEEECCch-HHHHH----HHHHHHHHHHhhcCCCCc-EEEEEECcccCch-h
Confidence 999999999953 345677899999999999975 32211 222333333322 3566 8999999999853 1
Q ss_pred hh---HHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 497 DR---FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 497 e~---~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
++ .+.+..+..+.+...++...+++|+.+||++ .||.+
T Consensus 123 ~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAkd-~nV~e 163 (331)
T 3r7w_B 123 FKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFD-HSIYE 163 (331)
T ss_dssp HHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSSS-SHHHH
T ss_pred hhhhHHHHhhHHHHHHHHhhcccccCceEEEeccCC-CcHHH
Confidence 22 2344444444443333322457899999997 57765
No 185
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.28 E-value=5e-12 Score=137.67 Aligned_cols=103 Identities=18% Similarity=0.149 Sum_probs=64.7
Q ss_pred eCCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEeccccccc
Q 004209 415 SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 494 (768)
Q Consensus 415 ~~~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~ 494 (768)
+.++.++||||||+.++.... ...+|++|+|+|+..+.. +. ..+. ...++| .++|+||+|+.+
T Consensus 146 ~~~~~i~liDTpG~~~~~~~~---~~~aD~vl~Vvd~~~~~~---~~----~l~~-----~~~~~p-~ivv~NK~Dl~~- 208 (341)
T 2p67_A 146 AAGYDVVIVETVGVGQSETEV---ARMVDCFISLQIAGGGDD---LQ----GIKK-----GLMEVA-DLIVINKDDGDN- 208 (341)
T ss_dssp HTTCSEEEEEEECCTTHHHHH---HTTCSEEEEEECC---------C----CCCH-----HHHHHC-SEEEECCCCTTC-
T ss_pred ccCCCEEEEeCCCccchHHHH---HHhCCEEEEEEeCCccHH---HH----HHHH-----hhhccc-CEEEEECCCCCC-
Confidence 467899999999987765443 478999999999976521 11 1111 112456 689999999975
Q ss_pred chhhHHHHHHHHhHHHhhcCCCC--CCCcEEEeecccCCCccc
Q 004209 495 SKDRFDSIKVQLGTFLRSCGFKD--ASLTWIPLSALENQNLVT 535 (768)
Q Consensus 495 s~e~~~~i~~el~~~lk~~g~~~--~~i~~IpVSA~tG~gI~e 535 (768)
...+.....++...+..++... ...+++++||++|+|+.+
T Consensus 209 -~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~ 250 (341)
T 2p67_A 209 -HTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDE 250 (341)
T ss_dssp -HHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHH
T ss_pred -hHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHH
Confidence 2334444455555444333110 124789999999999976
No 186
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.26 E-value=1.7e-11 Score=134.01 Aligned_cols=103 Identities=16% Similarity=0.109 Sum_probs=58.8
Q ss_pred eCCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEeccccccc
Q 004209 415 SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 494 (768)
Q Consensus 415 ~~~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~ 494 (768)
..++.++|+||||..... ......+|++++|+|+..+.. .+ .+.. ..+..+ .++|+||+|+.+
T Consensus 164 ~~~~~~iliDT~Gi~~~~---~~l~~~~d~vl~V~d~~~~~~--------~~---~i~~-~il~~~-~ivVlNK~Dl~~- 226 (349)
T 2www_A 164 GAGYDIILIETVGVGQSE---FAVADMVDMFVLLLPPAGGDE--------LQ---GIKR-GIIEMA-DLVAVTKSDGDL- 226 (349)
T ss_dssp HTTCSEEEEECCCC--CH---HHHHTTCSEEEEEECCC------------------------CCSC-SEEEECCCSGGG-
T ss_pred cCCCCEEEEECCCcchhh---hhHHhhCCEEEEEEcCCcchh--------HH---HhHH-HHHhcC-CEEEEeeecCCC-
Confidence 367889999999964221 223467999999999986520 11 1110 124566 588999999974
Q ss_pred chhhHHHHHHHHhHHHhhcCCC--CCCCcEEEeecccCCCccc
Q 004209 495 SKDRFDSIKVQLGTFLRSCGFK--DASLTWIPLSALENQNLVT 535 (768)
Q Consensus 495 s~e~~~~i~~el~~~lk~~g~~--~~~i~~IpVSA~tG~gI~e 535 (768)
.........++...++..... ....+++++||++|+|+.+
T Consensus 227 -~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~ 268 (349)
T 2www_A 227 -IVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISE 268 (349)
T ss_dssp -HHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHH
T ss_pred -chhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHH
Confidence 222222333444333221100 0135789999999999976
No 187
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.26 E-value=6.5e-12 Score=140.24 Aligned_cols=148 Identities=21% Similarity=0.282 Sum_probs=91.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC-eE
Q 004209 341 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN-YH 419 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~-~~ 419 (768)
..|+|+|++|||||||+++|++....+. ..+.+|+......+...+ ..
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~-------------------------------~~~ftTl~p~~G~V~~~~~~~ 206 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIA-------------------------------PYPFTTLSPNLGVVEVSEEER 206 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEEC-------------------------------CCTTCSSCCEEEEEECSSSCE
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCcccc-------------------------------CcccceecceeeEEEecCcce
Confidence 4699999999999999999985322110 012233333334444454 78
Q ss_pred EEEEeCCCccc-------hHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH-cCCCeEEEEEecccc
Q 004209 420 VVVLDSPGHKD-------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-FGVDQLIVAVNKMDA 491 (768)
Q Consensus 420 i~lIDTPGh~~-------f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~-lgip~iIVVvNKmDl 491 (768)
++++|+||+.+ +....+..+..+|.+|+|+|++ .. .+..+....++...++.. ...| .|+|+||+|+
T Consensus 207 ~~l~DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls-~~---~~~~ls~g~~el~~la~aL~~~P-~ILVlNKlDl 281 (416)
T 1udx_A 207 FTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAA-DE---PLKTLETLRKEVGAYDPALLRRP-SLVALNKVDL 281 (416)
T ss_dssp EEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT-SC---HHHHHHHHHHHHHHHCHHHHHSC-EEEEEECCTT
T ss_pred EEEEeccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCc-cC---CHHHHHHHHHHHHHHhHHhhcCC-EEEEEECCCh
Confidence 99999999743 2233455567899999999996 11 111111222333333332 3566 6788899998
Q ss_pred cccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 492 VQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 492 v~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
... +. ...+...++..+ ++++++||++++|+.+
T Consensus 282 ~~~--~~----~~~l~~~l~~~g-----~~vi~iSA~~g~gi~e 314 (416)
T 1udx_A 282 LEE--EA----VKALADALAREG-----LAVLPVSALTGAGLPA 314 (416)
T ss_dssp SCH--HH----HHHHHHHHHTTT-----SCEEECCTTTCTTHHH
T ss_pred hhH--HH----HHHHHHHHHhcC-----CeEEEEECCCccCHHH
Confidence 752 22 233444443322 5789999999999976
No 188
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.25 E-value=1.6e-11 Score=141.81 Aligned_cols=80 Identities=23% Similarity=0.223 Sum_probs=58.9
Q ss_pred eEEEEEeCCCccc-----------hHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEE
Q 004209 418 YHVVVLDSPGHKD-----------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAV 486 (768)
Q Consensus 418 ~~i~lIDTPGh~~-----------f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVv 486 (768)
..++||||||+.+ |...+...+..+|++|+|+|++... ...+..+++..+...+.| +++|+
T Consensus 154 ~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~-------~~~~~~~~l~~l~~~~~p-vilVl 225 (550)
T 2qpt_A 154 ESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLE-------ISDEFSEAIGALRGHEDK-IRVVL 225 (550)
T ss_dssp HHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCC-------CCHHHHHHHHHTTTCGGG-EEEEE
T ss_pred CCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCC-------CCHHHHHHHHHHHhcCCC-EEEEE
Confidence 4689999999875 6667777888999999999998631 124556666666666777 89999
Q ss_pred ecccccccchhhHHHHHHHHh
Q 004209 487 NKMDAVQYSKDRFDSIKVQLG 507 (768)
Q Consensus 487 NKmDlv~~s~e~~~~i~~el~ 507 (768)
||+|+++ .+.+..+...+.
T Consensus 226 NK~Dl~~--~~el~~~~~~l~ 244 (550)
T 2qpt_A 226 NKADMVE--TQQLMRVYGALM 244 (550)
T ss_dssp ECGGGSC--HHHHHHHHHHHH
T ss_pred ECCCccC--HHHHHHHHHHhh
Confidence 9999985 444555544443
No 189
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.23 E-value=1.7e-11 Score=134.49 Aligned_cols=156 Identities=18% Similarity=0.277 Sum_probs=74.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCe
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 418 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~ 418 (768)
..++|+|+|++|+|||||+++|++. ....... ......+..+++++......+...+.
T Consensus 36 ~~~~I~vvG~~g~GKSTLln~L~~~-~~~~~~~---------------------~~~~~~~~~~ti~~~~~~~~~~~~~~ 93 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLINSLFLT-DLYPERV---------------------IPGAAEKIERTVQIEASTVEIEERGV 93 (361)
T ss_dssp CEECEEECCCTTSCHHHHHHHHTTC-CC------------------------------------CEEEEEEEEC----CE
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhCC-CCCCCCc---------------------ccCCCcccCCceeEEEEEEEeecCCc
Confidence 3478999999999999999999742 1111000 00001112234444433333333443
Q ss_pred --EEEEEeCCCccchHH-----------------HHHHhccc----------CCEEEEEEecCCCccccccccchhhhHH
Q 004209 419 --HVVVLDSPGHKDFVP-----------------NMISGATQ----------SDAAILVIDASVGSFEVGMNTAKGLTRE 469 (768)
Q Consensus 419 --~i~lIDTPGh~~f~~-----------------~~i~g~~~----------aD~aILVVDA~~g~~e~~~~~~~~qt~e 469 (768)
.++||||||+.++.. ..+..... +|+++++|+..... +.....+
T Consensus 94 ~~~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~-------l~~~d~~ 166 (361)
T 2qag_A 94 KLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHG-------LKPLDVA 166 (361)
T ss_dssp EEEEEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSS-------CCHHHHH
T ss_pred ccceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCC-------cchhHHH
Confidence 789999999833211 22222222 35788888763321 1122223
Q ss_pred HHHHHHHcCCCeEEEEEecccccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCC
Q 004209 470 HAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQN 532 (768)
Q Consensus 470 ~l~ll~~lgip~iIVVvNKmDlv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~g 532 (768)
.+..+ ..++| +|+|+||+|+.. ......++.++..+++..+ ++++++||++|.|
T Consensus 167 ~~~~l-~~~~p-iIlV~NK~Dl~~--~~ev~~~k~~i~~~~~~~~-----i~~~~~Sa~~~~~ 220 (361)
T 2qag_A 167 FMKAI-HNKVN-IVPVIAKADTLT--LKERERLKKRILDEIEEHN-----IKIYHLPDAESDE 220 (361)
T ss_dssp HHHHT-CS-SC-EEEEEECCSSSC--HHHHHHHHHHHHHHTTCC------CCSCCCC------
T ss_pred HHHHh-ccCCC-EEEEEECCCCCC--HHHHHHHHHHHHHHHHHCC-----CCEEeCCCcCCCc
Confidence 33322 24566 899999999985 3344444556666665544 5779999999998
No 190
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.22 E-value=1.6e-11 Score=134.15 Aligned_cols=105 Identities=14% Similarity=0.148 Sum_probs=60.2
Q ss_pred CCeEEEEEeCCCccc-------------hHHHHHHhcccCC-EEEEEEecCCCccccccccchhhhH-HHHHHHHHcCCC
Q 004209 416 KNYHVVVLDSPGHKD-------------FVPNMISGATQSD-AAILVIDASVGSFEVGMNTAKGLTR-EHAQLIRSFGVD 480 (768)
Q Consensus 416 ~~~~i~lIDTPGh~~-------------f~~~~i~g~~~aD-~aILVVDA~~g~~e~~~~~~~~qt~-e~l~ll~~lgip 480 (768)
....++||||||..+ +...+..++..++ ++++|+|++.+. ..+.. +.+..+...+.|
T Consensus 128 ~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~--------~~~~~~~i~~~~~~~~~~ 199 (353)
T 2x2e_A 128 HVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDL--------ANSDALKVAKEVDPQGQR 199 (353)
T ss_dssp TCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCG--------GGCHHHHHHHHHCTTCTT
T ss_pred CCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCcc--------chhHHHHHHHHhCcCCCc
Confidence 357899999999532 3333344555554 555677877642 12222 244444455777
Q ss_pred eEEEEEecccccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 481 QLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 481 ~iIVVvNKmDlv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
+|+|+||+|+.+...+.. .+ +...+ ..+...-.+++++||++|.|+.+
T Consensus 200 -~i~V~NK~Dl~~~~~~~~-~~---~~~~~--~~l~~~~~~v~~~SA~~~~~i~~ 247 (353)
T 2x2e_A 200 -TIGVITKLDLMDEGTDAR-DV---LENKL--LPLRRGYIGVVNRSQKDIDGKKD 247 (353)
T ss_dssp -EEEEEECGGGSCTTCCCH-HH---HTTCS--SCCTTCEEECCCCCHHHHHTTCC
T ss_pred -eEEEeccccccCcchhHH-HH---HhCCc--ccccCCceEEEeCCccccccccc
Confidence 899999999985322111 11 11110 11111113578899999999865
No 191
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.21 E-value=8.1e-12 Score=125.92 Aligned_cols=97 Identities=9% Similarity=0.181 Sum_probs=60.1
Q ss_pred CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccc
Q 004209 416 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 495 (768)
Q Consensus 416 ~~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s 495 (768)
.+..++||||+|.... +. .....++.+|+|+|+..+. .... ..+...++| +++|+||+|+.+..
T Consensus 107 ~~~d~iiidt~G~~~~-~~--~~~~~~~~~i~vvd~~~~~---------~~~~---~~~~~~~~~-~iiv~NK~Dl~~~~ 170 (221)
T 2wsm_A 107 SDCDLLLIENVGNLIC-PV--DFDLGENYRVVMVSVTEGD---------DVVE---KHPEIFRVA-DLIVINKVALAEAV 170 (221)
T ss_dssp TTCSEEEEEEEEBSSG-GG--GCCCSCSEEEEEEEGGGCT---------THHH---HCHHHHHTC-SEEEEECGGGHHHH
T ss_pred CCCCEEEEeCCCCCCC-Cc--hhccccCcEEEEEeCCCcc---------hhhh---hhhhhhhcC-CEEEEecccCCcch
Confidence 4678999999994110 00 0012578999999998752 1111 122334677 68899999997521
Q ss_pred hhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 496 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 496 ~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
...++++.+.+.. .+ ...+++++||++|.|+.+
T Consensus 171 ~~~~~~~~~~~~~----~~---~~~~i~~~Sa~~g~gi~~ 203 (221)
T 2wsm_A 171 GADVEKMKADAKL----IN---PRAKIIEMDLKTGKGFEE 203 (221)
T ss_dssp TCCHHHHHHHHHH----HC---TTSEEEECBTTTTBTHHH
T ss_pred hhHHHHHHHHHHH----hC---CCCeEEEeecCCCCCHHH
Confidence 1234444444433 22 246889999999999976
No 192
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.20 E-value=3.3e-11 Score=131.86 Aligned_cols=105 Identities=14% Similarity=0.232 Sum_probs=67.1
Q ss_pred CCeEEEEEeCCCccch-------------HHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeE
Q 004209 416 KNYHVVVLDSPGHKDF-------------VPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQL 482 (768)
Q Consensus 416 ~~~~i~lIDTPGh~~f-------------~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~i 482 (768)
....++||||||..++ ...+..++..+|++|||||+..... ......+.+..+...+.+ +
T Consensus 134 ~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~------~~~~~~~l~~~~~~~~~~-~ 206 (360)
T 3t34_A 134 NVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDL------ATSDAIKISREVDPSGDR-T 206 (360)
T ss_dssp TSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCG------GGCHHHHHHHHSCTTCTT-E
T ss_pred CCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCc------CCHHHHHHHHHhcccCCC-E
Confidence 4568999999998776 5556677889999999998754211 011223333333445667 8
Q ss_pred EEEEecccccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCcccC
Q 004209 483 IVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTA 536 (768)
Q Consensus 483 IVVvNKmDlv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e~ 536 (768)
|+|+||+|+++......+ .++...+ ....+|+++|+.++.++.+.
T Consensus 207 i~V~nK~Dl~~~~~~~~~--------~~~~~~~-~~~~~~~~v~~~s~~~i~~~ 251 (360)
T 3t34_A 207 FGVLTKIDLMDKGTDAVE--------ILEGRSF-KLKYPWVGVVNRSQADINKN 251 (360)
T ss_dssp EEEEECGGGCCTTCCSHH--------HHTTSSS-CCSSCCEEECCCCHHHHHTT
T ss_pred EEEEeCCccCCCcccHHH--------HHcCccc-cccCCeEEEEECChHHhccC
Confidence 999999999863222111 1111111 12367899999999888653
No 193
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.19 E-value=2.8e-11 Score=143.53 Aligned_cols=106 Identities=11% Similarity=0.111 Sum_probs=65.6
Q ss_pred CCeEEEEEeCCCccc------------hHH-HHHHhc-ccCCEEEEEEecCCCccccccccchhhhH-HHHHHHHHcCCC
Q 004209 416 KNYHVVVLDSPGHKD------------FVP-NMISGA-TQSDAAILVIDASVGSFEVGMNTAKGLTR-EHAQLIRSFGVD 480 (768)
Q Consensus 416 ~~~~i~lIDTPGh~~------------f~~-~~i~g~-~~aD~aILVVDA~~g~~e~~~~~~~~qt~-e~l~ll~~lgip 480 (768)
...+++|+||||... -+. .+...+ ..+|++|+|+||+.+. ..+.. ..+..+...+.|
T Consensus 148 ~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~--------~~~d~l~ll~~L~~~g~p 219 (772)
T 3zvr_A 148 HVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDL--------ANSDALKIAKEVDPQGQR 219 (772)
T ss_dssp TCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCS--------SSCHHHHHHHHHCTTCSS
T ss_pred CCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCc--------chhHHHHHHHHHHhcCCC
Confidence 456899999999433 122 233333 4689999999999763 22333 455666667787
Q ss_pred eEEEEEecccccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCcccC
Q 004209 481 QLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTA 536 (768)
Q Consensus 481 ~iIVVvNKmDlv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e~ 536 (768)
+|+|+||+|+++.... ...+.. ... ..+.....+++++||++|.|+.++
T Consensus 220 -vIlVlNKiDlv~~~~~-~~~il~--~~~---~~l~lg~~~VV~iSA~~G~GvdeL 268 (772)
T 3zvr_A 220 -TIGVITKLDLMDEGTD-ARDVLE--NKL---LPLRRGYIGVVNRSQKDIDGKKDI 268 (772)
T ss_dssp -EEEEEECTTSSCTTCC-SHHHHT--TCS---SCCSSCEEECCCCCCEESSSSEEH
T ss_pred -EEEEEeCcccCCcchh-hHHHHH--HHh---hhhhccCCceEEecccccccchhH
Confidence 8999999999863221 111111 000 111111246789999999998763
No 194
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.14 E-value=8e-11 Score=129.65 Aligned_cols=114 Identities=18% Similarity=0.153 Sum_probs=83.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCe
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 418 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~ 418 (768)
...+|+|||.||+|||||+|+|++....+ ..-+++|++.....+...+.
T Consensus 71 g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v-------------------------------~~~pftT~~~~~g~~~~~~~ 119 (376)
T 4a9a_A 71 GVASVGFVGFPSVGKSTLLSKLTGTESEA-------------------------------AEYEFTTLVTVPGVIRYKGA 119 (376)
T ss_dssp SSEEEEEECCCCHHHHHHHHHHHSBCCCG-------------------------------GGTCSSCCCEEEEEEEETTE
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCCcc-------------------------------cCCCCceeeeeeEEEEeCCc
Confidence 45789999999999999999999532222 12267899988888889999
Q ss_pred EEEEEeCCCccc-------hHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcC----CCeEEEEEe
Q 004209 419 HVVVLDSPGHKD-------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFG----VDQLIVAVN 487 (768)
Q Consensus 419 ~i~lIDTPGh~~-------f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lg----ip~iIVVvN 487 (768)
++.|+||||..+ .....+..++.||++++|||++++. .+.......+...+ -++.++++|
T Consensus 120 ~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~p~---------~~~~~i~~EL~~~~~~l~~k~~~i~~n 190 (376)
T 4a9a_A 120 KIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLFIILDVNKPL---------HHKQIIEKELEGVGIRLNKTPPDILIK 190 (376)
T ss_dssp EEEEEECGGGCCC-----CHHHHHHHHHHHCSEEEEEEETTSHH---------HHHHHHHHHHHHTTEEETCCCCCEEEE
T ss_pred EEEEEeCCCccCCchhhhHHHHHHHHHHHhcCccccccccCccH---------HHHHHHHHHHHHhhHhhccCChhhhhh
Confidence 999999999543 4456778889999999999998752 12222222233332 223578999
Q ss_pred ccccc
Q 004209 488 KMDAV 492 (768)
Q Consensus 488 KmDlv 492 (768)
|+|.-
T Consensus 191 K~d~~ 195 (376)
T 4a9a_A 191 KKEKG 195 (376)
T ss_dssp ECSSS
T ss_pred Hhhhh
Confidence 99963
No 195
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.09 E-value=5.5e-10 Score=115.57 Aligned_cols=109 Identities=13% Similarity=0.130 Sum_probs=62.6
Q ss_pred CeEEEEEeCCCccchHH------HHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEeccc
Q 004209 417 NYHVVVLDSPGHKDFVP------NMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 490 (768)
Q Consensus 417 ~~~i~lIDTPGh~~f~~------~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmD 490 (768)
.+.++||||||..++.. .+...+.. +++|+|+|+........+ .......+......++| +++|+||+|
T Consensus 108 ~~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~---~~~~~~~~~~~~~~~~p-~~iv~NK~D 182 (262)
T 1yrb_A 108 ENDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDY---CFVRFFALLIDLRLGAT-TIPALNKVD 182 (262)
T ss_dssp HCSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHH---HHHHHHHHHHHHHHTSC-EEEEECCGG
T ss_pred cCCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHH---HHHHHHHHHHhcccCCC-eEEEEeccc
Confidence 35899999999877532 23345566 899999998753211000 00011111223445777 789999999
Q ss_pred ccccchhhHHHHHHHH---hH---------------------HHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 491 AVQYSKDRFDSIKVQL---GT---------------------FLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 491 lv~~s~e~~~~i~~el---~~---------------------~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
+... ...+++.+.+ .. +++.++ ...+++++||++|+|+.+
T Consensus 183 ~~~~--~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~SA~~~~gi~~ 246 (262)
T 1yrb_A 183 LLSE--EEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVL---PPVRVLYLSAKTREGFED 246 (262)
T ss_dssp GCCH--HHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHS---CCCCCEECCTTTCTTHHH
T ss_pred cccc--ccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhc---CcccceEEEecCcccHHH
Confidence 8752 2122222211 11 122333 124679999999999976
No 196
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.93 E-value=1.4e-09 Score=119.24 Aligned_cols=82 Identities=18% Similarity=0.089 Sum_probs=55.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC---
Q 004209 341 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN--- 417 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~--- 417 (768)
++|+|+|.+|+|||||+++|++....+ ...+++|++.....+...+
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v-------------------------------~~~p~tTi~p~~g~v~~~~~r~ 51 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEA-------------------------------ANYPFCTIEPNTGVVPMPDPRL 51 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC-------------------------------------CCCCCCCCSSEEECCCHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcc-------------------------------cCCCCceECceEEEEecCCccc
Confidence 689999999999999999999632100 0012233332222222222
Q ss_pred --------------eEEEEEeCCCccchHH-------HHHHhcccCCEEEEEEecCC
Q 004209 418 --------------YHVVVLDSPGHKDFVP-------NMISGATQSDAAILVIDASV 453 (768)
Q Consensus 418 --------------~~i~lIDTPGh~~f~~-------~~i~g~~~aD~aILVVDA~~ 453 (768)
..+.||||||+.++.. ..+..++.+|++|+|+|++.
T Consensus 52 ~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 52 DALAEIVKPERILPTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHHHHHHCCSEEECCEEEEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred ceeeeeecccceeeeEEEEEECCCCcccccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 5799999999887643 23556788999999999986
No 197
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=98.88 E-value=4.8e-09 Score=114.77 Aligned_cols=131 Identities=15% Similarity=0.108 Sum_probs=81.3
Q ss_pred CeEEEEEEEEEeeCCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCcc---ccc-cccchhhhHHHHHHHHH--
Q 004209 403 GITMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSF---EVG-MNTAKGLTREHAQLIRS-- 476 (768)
Q Consensus 403 GiTid~~~~~~~~~~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~---e~~-~~~~~~qt~e~l~ll~~-- 476 (768)
..|+.+....|..++..+.||||+|++.|...+......++++|+|+|.+.-.. |.. ... .......+..+..
T Consensus 178 ~~T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr-~~e~~~~~~~i~~~~ 256 (353)
T 1cip_A 178 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNR-MHESMKLFDSICNNK 256 (353)
T ss_dssp CCCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEH-HHHHHHHHHHHHTCG
T ss_pred CceeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhh-HHHHHHHHHHHHcCc
Confidence 345555556677788999999999999999999999999999999999986210 000 011 1122222222221
Q ss_pred --cCCCeEEEEEecccccccc---------------hhhHHHHHHHHhHHHhhcCC--CCCCCcEEEeecccCCCccc
Q 004209 477 --FGVDQLIVAVNKMDAVQYS---------------KDRFDSIKVQLGTFLRSCGF--KDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 477 --lgip~iIVVvNKmDlv~~s---------------~e~~~~i~~el~~~lk~~g~--~~~~i~~IpVSA~tG~gI~e 535 (768)
.++| +|||.||+|+.... ....++...-+...+..+.. ....+.++++||++|.||.+
T Consensus 257 ~~~~~p-iiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~ 333 (353)
T 1cip_A 257 WFTDTS-IILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQF 333 (353)
T ss_dssp GGTTSE-EEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHH
T ss_pred cccCCc-EEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHH
Confidence 2455 89999999986310 01123333333322222221 12357889999999999976
No 198
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.88 E-value=3.5e-09 Score=115.08 Aligned_cols=104 Identities=16% Similarity=0.172 Sum_probs=58.4
Q ss_pred eCCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEeccccccc
Q 004209 415 SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 494 (768)
Q Consensus 415 ~~~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~ 494 (768)
..+..++|+||||..+--. .....+|++++|+|+..+.- ...+... . +.++ .++++||+|+...
T Consensus 145 ~~~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~---~~~i~~~---i------~~~~-~ivvlNK~Dl~~~ 208 (337)
T 2qm8_A 145 AAGFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDE---LQGIKKG---I------FELA-DMIAVNKADDGDG 208 (337)
T ss_dssp HTTCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC---------CCTT---H------HHHC-SEEEEECCSTTCC
T ss_pred cCCCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCccc---HHHHHHH---H------hccc-cEEEEEchhccCc
Confidence 3678999999999654221 22367999999999875420 0000000 0 1123 3667799997542
Q ss_pred chhhHHHHHHHHhHHHhhcCCC--CCCCcEEEeecccCCCccc
Q 004209 495 SKDRFDSIKVQLGTFLRSCGFK--DASLTWIPLSALENQNLVT 535 (768)
Q Consensus 495 s~e~~~~i~~el~~~lk~~g~~--~~~i~~IpVSA~tG~gI~e 535 (768)
.+......+++...+....-. ....+++++||++|.|+.+
T Consensus 209 -~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~ 250 (337)
T 2qm8_A 209 -ERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDS 250 (337)
T ss_dssp -HHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHH
T ss_pred -hhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHH
Confidence 222223334444433222200 0124789999999999976
No 199
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.87 E-value=5.3e-09 Score=111.86 Aligned_cols=158 Identities=16% Similarity=0.235 Sum_probs=72.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEee--C
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS--K 416 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~--~ 416 (768)
-.++|+++|+.|+|||||+++|.+..-..... +. .+... ..+++........+.. .
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~-------------------~~g~~--~~~t~~~~~~~~~~q~~~~ 74 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERV-IS-------------------GAAEK--IERTVQIEASTVEIEERGV 74 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC----------------------------------------------CEEEEC---C
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCCCccCCCC-cc-------------------cCCcc--cCCcceEeeEEEEecCCCc
Confidence 35889999999999999999998421111000 00 00000 0001111111111111 2
Q ss_pred CeEEEEEeCCCc-------cch---HH-------HHHHhcc----------cCCEEEEEEecCCCccccccccchhhhHH
Q 004209 417 NYHVVVLDSPGH-------KDF---VP-------NMISGAT----------QSDAAILVIDASVGSFEVGMNTAKGLTRE 469 (768)
Q Consensus 417 ~~~i~lIDTPGh-------~~f---~~-------~~i~g~~----------~aD~aILVVDA~~g~~e~~~~~~~~qt~e 469 (768)
...+++|||||. +.| .. ..+..+. .++++|++++.+.+ +++ ....+
T Consensus 75 ~~~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~----~Ld---~~~~~ 147 (301)
T 2qnr_A 75 KLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGH----GLK---PLDVA 147 (301)
T ss_dssp CEEEEEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSS----SCC---HHHHH
T ss_pred ccCcchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCccc----CCC---HHHHH
Confidence 357899999997 322 11 2222222 13445666654432 122 22233
Q ss_pred HHHHHHHcCCCeEEEEEecccccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 470 HAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 470 ~l~ll~~lgip~iIVVvNKmDlv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
.+..+. -.++ +++|+||.|+.. .......++++.++++..+ ++++++||++| |+.+
T Consensus 148 ~l~~l~-~~~~-iilV~~K~Dl~~--~~e~~~~~~~~~~~~~~~~-----~~~~e~Sa~~~-~v~e 203 (301)
T 2qnr_A 148 FMKAIH-NKVN-IVPVIAKADTLT--LKERERLKKRILDEIEEHN-----IKIYHLPDAES-DEDE 203 (301)
T ss_dssp HHHHHT-TTSC-EEEEECCGGGSC--HHHHHHHHHHHHHHHHHTT-----CCCCCCC---------
T ss_pred HHHHHH-hcCC-EEEEEEeCCCCC--HHHHHHHHHHHHHHHHHcC-----CeEEecCCccc-cccH
Confidence 333322 2345 899999999975 3333344556666666655 46799999999 9876
No 200
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.87 E-value=7.8e-09 Score=115.45 Aligned_cols=157 Identities=17% Similarity=0.236 Sum_probs=76.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeC--
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK-- 416 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~-- 416 (768)
-.++|+|+|..|+|||||+++|++....... .+... .+ ....+.+......+...
T Consensus 30 vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~--------------~~~~~----~~-----~~~t~~~~~i~~v~q~~~~ 86 (418)
T 2qag_C 30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPE--------------YPGPS----HR-----IKKTVQVEQSKVLIKEGGV 86 (418)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHTTCCCCCCC--------------CCSCC--------------CCEEEEEECC------
T ss_pred CCEEEEEECCCCCcHHHHHHHHhCCCCCCCC--------------CCCcc----cC-----CccceeeeeEEEEEecCCc
Confidence 4578999999999999999999853211000 00000 00 00111111111111112
Q ss_pred CeEEEEEeCCCccchHH------HHH--------H-----------hccc--CCEEEEEEecC-CCccccccccchhhhH
Q 004209 417 NYHVVVLDSPGHKDFVP------NMI--------S-----------GATQ--SDAAILVIDAS-VGSFEVGMNTAKGLTR 468 (768)
Q Consensus 417 ~~~i~lIDTPGh~~f~~------~~i--------~-----------g~~~--aD~aILVVDA~-~g~~e~~~~~~~~qt~ 468 (768)
...++++||||...+.. .+. . .+.. ++++|++++.+ .+. .....
T Consensus 87 ~~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L--------~~~d~ 158 (418)
T 2qag_C 87 QLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGL--------KPLDI 158 (418)
T ss_dssp CEEEEEEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSC--------CHHHH
T ss_pred ccceeeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCC--------CHHHH
Confidence 23689999999876532 110 0 1122 34566666654 342 23333
Q ss_pred HHHHHHHHcCCCeEEEEEecccccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 469 EHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 469 e~l~ll~~lgip~iIVVvNKmDlv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
+.+..+.. +++ +|+|+||+|+.. ...+...+.++...+...+ ++++.+|+.++.++.+
T Consensus 159 ~~lk~L~~-~v~-iIlVinK~Dll~--~~ev~~~k~~i~~~~~~~~-----i~~~~~sa~~~~~v~~ 216 (418)
T 2qag_C 159 EFMKRLHE-KVN-IIPLIAKADTLT--PEECQQFKKQIMKEIQEHK-----IKIYEFPETDDEEENK 216 (418)
T ss_dssp HHHHHHTT-TSE-EEEEEESTTSSC--HHHHHHHHHHHHHHHHHHT-----CCCCCCC---------
T ss_pred HHHHHHhc-cCc-EEEEEEcccCcc--HHHHHHHHHHHHHHHHHcC-----CeEEeCCCCCCcCHHH
Confidence 44444433 666 899999999985 4455666677777776665 4568899999988754
No 201
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=98.84 E-value=7.2e-09 Score=113.71 Aligned_cols=130 Identities=15% Similarity=0.111 Sum_probs=72.4
Q ss_pred eEEEEEEEEEeeCCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCc---cccc-cccchhhhHHHHHHHHH---
Q 004209 404 ITMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGS---FEVG-MNTAKGLTREHAQLIRS--- 476 (768)
Q Consensus 404 iTid~~~~~~~~~~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~---~e~~-~~~~~~qt~e~l~ll~~--- 476 (768)
.|+.+....|..++..+.||||+|++.|...+...+..++++|+|+|.+.-. +|.. .+. .......+..+..
T Consensus 187 ~T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~-~~es~~~~~~i~~~~~ 265 (362)
T 1zcb_A 187 PTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNR-LTESLNIFETIVNNRV 265 (362)
T ss_dssp CCSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEH-HHHHHHHHHHHHTCGG
T ss_pred CccceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccH-HHHHHHHHHHHhcchh
Confidence 3444555667778899999999999999999999999999999999998621 0000 000 1111222222211
Q ss_pred -cCCCeEEEEEecccccccc----------------hhhHHHHHHHHhHHHhhcCCC--CCCCcEEEeecccCCCccc
Q 004209 477 -FGVDQLIVAVNKMDAVQYS----------------KDRFDSIKVQLGTFLRSCGFK--DASLTWIPLSALENQNLVT 535 (768)
Q Consensus 477 -lgip~iIVVvNKmDlv~~s----------------~e~~~~i~~el~~~lk~~g~~--~~~i~~IpVSA~tG~gI~e 535 (768)
.++| +|+++||+|+.... ...+++...-+...+..+.-. ...+.++++||++|.||.+
T Consensus 266 ~~~~p-iILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~ 342 (362)
T 1zcb_A 266 FSNVS-IILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRL 342 (362)
T ss_dssp GTTSE-EEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHH
T ss_pred hCCCC-EEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHH
Confidence 2455 89999999986310 012233333222222222111 2356789999999999976
No 202
>1xe1_A Hypothetical protein PF0907; structural genomics, unknown function, protein structure INI secsg, conserved hypothetical protein; HET: MSE; 2.00A {Pyrococcus furiosus} SCOP: b.43.3.1
Probab=98.84 E-value=6.5e-09 Score=94.69 Aligned_cols=80 Identities=29% Similarity=0.414 Sum_probs=67.6
Q ss_pred CCCceeeeEeEEeeCCCcEEEEEEEecCcccCCCEEEEccCC-eeeEEEeeeecccccceeccCCceEEEeccccccccc
Q 004209 566 SKPLLMPICDVLKSQHGQVSACGKLEAGALRSGLKVLVLPSG-EVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVM 644 (768)
Q Consensus 566 ~~plr~~I~dv~~~~~G~V~v~G~V~sG~L~~Gd~v~i~P~~-~~~~VksI~~~~~~v~~A~aGd~V~l~L~gi~~~~i~ 644 (768)
..|..|.|..++..-.|.+ +.|+|++|+|++|+.| |.+ ...+|++|+++++++++|.+||+|+++|+|+.. +++
T Consensus 32 ~~P~k~~ilp~~~~vFgpv-ivGrVe~G~LK~G~~V---Pg~~~vg~VkSIE~~~e~v~eA~~GdnVai~Ikg~~~-~I~ 106 (116)
T 1xe1_A 32 KPAGKVVVEEVVNIMGKDV-IIGTVESGMIGVGFKV---KGPSGIGGIVRIERNREKVEFAIAGDRIGISIEGKIG-KVK 106 (116)
T ss_dssp SCSEEEEEEEEEEETTEEE-EEEEEEEEEEETTCEE---ECSSCEEEEEEEEETTEEESEEETTCEEEEEEESCCC-CCC
T ss_pred cCcEEEEEEecCCeEECCe-eEEEEeEEEEcCCCCc---CCCceEEEEEEEEECCcCcCCcCCCCEEEEEEECCcc-ccC
Confidence 3466666655333223666 7889999999999999 988 799999999999999999999999999999877 899
Q ss_pred CCcccc
Q 004209 645 SGGVLC 650 (768)
Q Consensus 645 rG~VL~ 650 (768)
+|++|-
T Consensus 107 ~GdVLy 112 (116)
T 1xe1_A 107 KGDVLE 112 (116)
T ss_dssp TTCEEE
T ss_pred CCcEEE
Confidence 999985
No 203
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.83 E-value=1.3e-08 Score=102.70 Aligned_cols=96 Identities=11% Similarity=0.139 Sum_probs=55.1
Q ss_pred CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccch
Q 004209 417 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 496 (768)
Q Consensus 417 ~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~ 496 (768)
+..+.++|++|..... ...-...+..+.|+|+..+.- ... .. ...++.| .++|+||+|+.+...
T Consensus 118 ~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~--------~~~-~~---~~~~~~~-~iiv~NK~Dl~~~~~ 181 (226)
T 2hf9_A 118 EIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDD--------TIE-KH---PGIMKTA-DLIVINKIDLADAVG 181 (226)
T ss_dssp GCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTT--------TTT-TC---HHHHTTC-SEEEEECGGGHHHHT
T ss_pred CCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchh--------hHh-hh---hhHhhcC-CEEEEeccccCchhH
Confidence 3478999999942110 011234677888899754310 011 01 1124666 689999999975211
Q ss_pred hhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 497 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 497 e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
..++++.+.+ +..+ ...+++++||++|.|+.+
T Consensus 182 ~~~~~~~~~~----~~~~---~~~~~~~~Sa~~g~gv~~ 213 (226)
T 2hf9_A 182 ADIKKMENDA----KRIN---PDAEVVLLSLKTMEGFDK 213 (226)
T ss_dssp CCHHHHHHHH----HHHC---TTSEEEECCTTTCTTHHH
T ss_pred HHHHHHHHHH----HHhC---CCCeEEEEEecCCCCHHH
Confidence 1233333333 3222 235889999999999976
No 204
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.81 E-value=2.3e-09 Score=122.37 Aligned_cols=67 Identities=28% Similarity=0.510 Sum_probs=42.2
Q ss_pred CCeEEEEEeCCCccc----hHHHHHHh--cccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecc
Q 004209 416 KNYHVVVLDSPGHKD----FVPNMISG--ATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKM 489 (768)
Q Consensus 416 ~~~~i~lIDTPGh~~----f~~~~i~g--~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKm 489 (768)
.++.++||||||... +...+... +..+|.+++||||..+. .....+..+... +|-.+||+||+
T Consensus 182 ~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~----------~~~~~a~~~~~~-~~i~gvVlNK~ 250 (504)
T 2j37_W 182 ENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQ----------ACEAQAKAFKDK-VDVASVIVTKL 250 (504)
T ss_dssp TTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCT----------THHHHHHHHHHH-HCCCCEEEECT
T ss_pred CCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccc----------cHHHHHHHHHhh-cCceEEEEeCC
Confidence 678999999999652 33333222 33799999999998762 112222222221 34127899999
Q ss_pred cccc
Q 004209 490 DAVQ 493 (768)
Q Consensus 490 Dlv~ 493 (768)
|...
T Consensus 251 D~~~ 254 (504)
T 2j37_W 251 DGHA 254 (504)
T ss_dssp TSCC
T ss_pred cccc
Confidence 9874
No 205
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.81 E-value=4.1e-09 Score=115.84 Aligned_cols=37 Identities=16% Similarity=0.082 Sum_probs=30.1
Q ss_pred CeEEEEEeCCCccch-------HHHHHHhcccCCEEEEEEecCC
Q 004209 417 NYHVVVLDSPGHKDF-------VPNMISGATQSDAAILVIDASV 453 (768)
Q Consensus 417 ~~~i~lIDTPGh~~f-------~~~~i~g~~~aD~aILVVDA~~ 453 (768)
...+.||||||..++ ....+..++.+|++++|+|+..
T Consensus 68 ~~~i~lvDtpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 68 PTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCEEEEEECCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred CceEEEEECCCccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 457999999997663 3456677889999999999986
No 206
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=98.77 E-value=1.5e-08 Score=109.49 Aligned_cols=129 Identities=14% Similarity=0.081 Sum_probs=80.7
Q ss_pred cCeEEEEEEEEEeeCCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecC-------CCccccccccchhhhHHHHHHH
Q 004209 402 RGITMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDAS-------VGSFEVGMNTAKGLTREHAQLI 474 (768)
Q Consensus 402 ~GiTid~~~~~~~~~~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~-------~g~~e~~~~~~~~qt~e~l~ll 474 (768)
+..|+.+....+..++..+.||||+|++.|...+......++++|+|+|.+ +..-...| ......+..+
T Consensus 151 r~~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~----~es~~~~~~i 226 (327)
T 3ohm_A 151 RVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRM----EESKALFRTI 226 (327)
T ss_dssp CCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHH----HHHHHHHHHH
T ss_pred cCceeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHH----HHHHHHHHHH
Confidence 344555566677788999999999999999999999999999999999875 21101111 1111222211
Q ss_pred HH----cCCCeEEEEEecccccccc----------------hhhHHHHHHHHhHHHhhcCC-CCCCCcEEEeecccCCCc
Q 004209 475 RS----FGVDQLIVAVNKMDAVQYS----------------KDRFDSIKVQLGTFLRSCGF-KDASLTWIPLSALENQNL 533 (768)
Q Consensus 475 ~~----lgip~iIVVvNKmDlv~~s----------------~e~~~~i~~el~~~lk~~g~-~~~~i~~IpVSA~tG~gI 533 (768)
.. .++| +|++.||+|+.... ...+++..+-+...+....- ....+.+..+||+++.||
T Consensus 227 ~~~~~~~~~~-iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV 305 (327)
T 3ohm_A 227 ITYPWFQNSS-VILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENI 305 (327)
T ss_dssp HTSGGGTTCE-EEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHH
T ss_pred hhhhccCCce-EEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHH
Confidence 11 2455 89999999987411 11223333333333322221 123467788999999999
Q ss_pred cc
Q 004209 534 VT 535 (768)
Q Consensus 534 ~e 535 (768)
..
T Consensus 306 ~~ 307 (327)
T 3ohm_A 306 RF 307 (327)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 207
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=98.71 E-value=2.6e-08 Score=108.17 Aligned_cols=90 Identities=19% Similarity=0.166 Sum_probs=60.7
Q ss_pred cCeEEEEEEEEEeeCCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCC---cccc-ccccchhhhHHHHH-HHHH
Q 004209 402 RGITMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVG---SFEV-GMNTAKGLTREHAQ-LIRS 476 (768)
Q Consensus 402 ~GiTid~~~~~~~~~~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g---~~e~-~~~~~~~qt~e~l~-ll~~ 476 (768)
+..|+.+....+..++..+.||||+|++.|...+......++++|+|+|.+.- ..+. ....+ ......+. ++..
T Consensus 145 ~~~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~-~es~~~~~~i~~~ 223 (340)
T 4fid_A 145 RTKTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRL-TESIAVFKDIMTN 223 (340)
T ss_dssp CCCCCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHH-HHHHHHHHHHHHC
T ss_pred ccceeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchH-HHHHHHHHHHhhh
Confidence 34455566677778899999999999999999999999999999999999720 0000 01111 11112222 2221
Q ss_pred ---cCCCeEEEEEecccccc
Q 004209 477 ---FGVDQLIVAVNKMDAVQ 493 (768)
Q Consensus 477 ---lgip~iIVVvNKmDlv~ 493 (768)
.++| +|++.||+|+..
T Consensus 224 ~~~~~~p-iiLv~NK~DL~~ 242 (340)
T 4fid_A 224 EFLKGAV-KLIFLNKMDLFE 242 (340)
T ss_dssp GGGTTSE-EEEEEECHHHHH
T ss_pred hccCCCe-EEEEEECchhhh
Confidence 2455 899999999864
No 208
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.64 E-value=9.6e-08 Score=106.62 Aligned_cols=144 Identities=19% Similarity=0.293 Sum_probs=77.9
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC--
Q 004209 340 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN-- 417 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~-- 417 (768)
.++|+|+|+.|+|||||++.|++.. +. |.. .....++.+.......+...+
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~--l~--------------g~~-----------~~~~~~~~~~~~i~~v~Q~~~l~ 94 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTK--FE--------------GEP-----------ATHTQPGVQLQSNTYDLQESNVR 94 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSC--C--------------------------------CCSSCEEEEEEEEEEC--CE
T ss_pred eeEEEEECCCCCCHHHHHHHHhCcc--cc--------------CCc-----------CCCCCccceEeeEEEEeecCccc
Confidence 4679999999999999999999531 10 000 000112334332222222222
Q ss_pred eEEEEEeCCCccch-------------HHH----HHHhc---c-------cC--C-EEEEEEecCCCccccccccchhhh
Q 004209 418 YHVVVLDSPGHKDF-------------VPN----MISGA---T-------QS--D-AAILVIDASVGSFEVGMNTAKGLT 467 (768)
Q Consensus 418 ~~i~lIDTPGh~~f-------------~~~----~i~g~---~-------~a--D-~aILVVDA~~g~~e~~~~~~~~qt 467 (768)
..++++|+||.... +.. .+... . .+ | ++++|+|+.++. ....
T Consensus 95 ~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l--------~~~D 166 (427)
T 2qag_B 95 LKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSL--------KSLD 166 (427)
T ss_dssp EEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC-----------CHHH
T ss_pred cccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCC--------CHHH
Confidence 26899999995432 111 11111 1 12 2 466778887763 2334
Q ss_pred HHHHHHHHHcCCCeEEEEEecccccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeec
Q 004209 468 REHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSA 527 (768)
Q Consensus 468 ~e~l~ll~~lgip~iIVVvNKmDlv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA 527 (768)
.+.+..+. .+++ +|+|+||+|.+. .+....+...+...++..| ++++.+|.
T Consensus 167 ieilk~L~-~~~~-vI~Vi~KtD~Lt--~~E~~~l~~~I~~~L~~~g-----i~I~~is~ 217 (427)
T 2qag_B 167 LVTMKKLD-SKVN-IIPIIAKADAIS--KSELTKFKIKITSELVSNG-----VQIYQFPT 217 (427)
T ss_dssp HHHHHHTC-SCSE-EEEEESCGGGSC--HHHHHHHHHHHHHHHBTTB-----CCCCCCC-
T ss_pred HHHHHHHh-hCCC-EEEEEcchhccc--hHHHHHHHHHHHHHHHHcC-----CcEEecCC
Confidence 44444443 3555 999999999885 4455666666666554433 45566664
No 209
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.62 E-value=5.7e-09 Score=114.81 Aligned_cols=146 Identities=14% Similarity=0.130 Sum_probs=85.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCeEE
Q 004209 341 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 420 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~~i 420 (768)
.+|+++|.+|+|||||+|+|++..... .........+|+|.+.....+. ..+
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~-------------------------~~~~~~~~~~gtT~~~~~~~~~---~~~ 214 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGK-------------------------GNVITTSYFPGTTLDMIEIPLE---SGA 214 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHT-------------------------TCCCEEEECTTSSCEEEEEECS---TTC
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCC-------------------------ccceeecCCCCeEEeeEEEEeC---CCe
Confidence 469999999999999999999641000 0011122346778776654432 238
Q ss_pred EEEeCCCccch-------HHHHHHhc---ccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEeccc
Q 004209 421 VVLDSPGHKDF-------VPNMISGA---TQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 490 (768)
Q Consensus 421 ~lIDTPGh~~f-------~~~~i~g~---~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmD 490 (768)
.|+||||..+. ....+..+ ...|.+++++++.+..+..++.. +.++...+++ +++++||+|
T Consensus 215 ~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~--------l~~l~~~~~~-~~~v~~k~d 285 (369)
T 3ec1_A 215 TLYDTPGIINHHQMAHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLAR--------LDYIKGGRRS-FVCYMANEL 285 (369)
T ss_dssp EEEECCSCCCCSSGGGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTEE--------EEEEESSSEE-EEEEECTTS
T ss_pred EEEeCCCcCcHHHHHHHHhHHHHHHHhcccccCceEEEEcCCceEEECCEEE--------EEEccCCCce-EEEEecCCc
Confidence 99999994321 11222333 66899999999965444333322 1122334566 899999999
Q ss_pred ccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCc
Q 004209 491 AVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNL 533 (768)
Q Consensus 491 lv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI 533 (768)
.+.. ...+...+.+.+.+ | ..+.|.++....++
T Consensus 286 ~~~~--~~~~~~~~~~~~~~---g-----~~l~p~~~~~~~~~ 318 (369)
T 3ec1_A 286 TVHR--TKLEKADSLYANQL---G-----ELLSPPSKRYAAEF 318 (369)
T ss_dssp CEEE--EEGGGHHHHHHHHB---T-----TTBCSSCGGGTTTC
T ss_pred cccc--ccHHHHHHHHHHhc---C-----CccCCCCchhhhhc
Confidence 8853 22333333333332 3 13456666665555
No 210
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.58 E-value=1.1e-08 Score=112.55 Aligned_cols=147 Identities=14% Similarity=0.172 Sum_probs=83.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCeEE
Q 004209 341 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 420 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~~i 420 (768)
.+|+++|.+|+|||||+|+|++...... .+.......+|+|.+.....+.. .+
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~------------------------~~~~~~~~~~gtT~~~~~~~~~~---~~ 213 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDET------------------------ENVITTSHFPGTTLDLIDIPLDE---ES 213 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSC------------------------SSCCEEECCC----CEEEEESSS---SC
T ss_pred ceEEEecCCCCChhHHHHHHHhhhcccc------------------------ccceecCCCCCeecceEEEEecC---Ce
Confidence 4699999999999999999996421100 00111233477887766544322 38
Q ss_pred EEEeCCCccc-------hHHHHHHh---cccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEeccc
Q 004209 421 VVLDSPGHKD-------FVPNMISG---ATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 490 (768)
Q Consensus 421 ~lIDTPGh~~-------f~~~~i~g---~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmD 490 (768)
.|+||||..+ +....+.. ....+.+++++++....+..++..+ ..+...++| +++++||+|
T Consensus 214 ~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~~--------d~l~~~~~~-~~~v~nk~d 284 (368)
T 3h2y_A 214 SLYDTPGIINHHQMAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLARF--------DYVSGGRRA-FTCHFSNRL 284 (368)
T ss_dssp EEEECCCBCCTTSGGGGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTTEEE--------EEEESSSEE-EEEEECTTS
T ss_pred EEEeCCCcCcHHHHHHHhhHHHHHHhccccccCceEEEEcCCCEEEEcceEEE--------EEecCCCce-EEEEecCcc
Confidence 9999999532 11222222 3568999999999655444333221 122234566 899999999
Q ss_pred ccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCc
Q 004209 491 AVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNL 533 (768)
Q Consensus 491 lv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI 533 (768)
.+.. ...+...+.+.+. +|. .+.|.++.+..++
T Consensus 285 ~~~~--~~~~~~~~~~~~~---~g~-----~l~p~~~~~~~~~ 317 (368)
T 3h2y_A 285 TIHR--TKLEKADELYKNH---AGD-----LLSPPTPEELENM 317 (368)
T ss_dssp CEEE--EEHHHHHHHHHHH---BTT-----TBCSSCHHHHHTS
T ss_pred cccc--ccHHHHHHHHHHH---hCC-----ccCCCchhhHhhc
Confidence 8863 3333333444433 331 3456666665555
No 211
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.53 E-value=3.7e-07 Score=102.39 Aligned_cols=164 Identities=20% Similarity=0.245 Sum_probs=84.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhC------------ccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEE
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFLLG------------RITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITM 406 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~------------~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTi 406 (768)
++..|+++|.+|+||||++..|...+. .......+++...+...+...+......+ +.+. .
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~d--p~~i-----~ 171 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKD--AIKL-----A 171 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCC--HHHH-----H
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCC--HHHH-----H
Confidence 467899999999999999999986421 11222233333333333322211000000 0000 0
Q ss_pred EEEEEEEeeCCeEEEEEeCCCccc----hHHHH--HHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCC
Q 004209 407 TVAVAYFDSKNYHVVVLDSPGHKD----FVPNM--ISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVD 480 (768)
Q Consensus 407 d~~~~~~~~~~~~i~lIDTPGh~~----f~~~~--i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip 480 (768)
..+...+...++.++||||||... +..++ +..+..+|.++||+||..|. .....+.... -.++
T Consensus 172 ~~al~~a~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq----------~a~~~a~~f~-~~~~ 240 (443)
T 3dm5_A 172 KEGVDYFKSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQ----------QAYNQALAFK-EATP 240 (443)
T ss_dssp HHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGG----------GHHHHHHHHH-HSCT
T ss_pred HHHHHHHHhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCch----------hHHHHHHHHH-hhCC
Confidence 000001112458899999999322 33322 23455699999999998651 1222222222 1233
Q ss_pred eEEEEEecccccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 481 QLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 481 ~iIVVvNKmDlv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
...||+||+|.... ... +..+....+ +|+.+++. |+++.+
T Consensus 241 i~gVIlTKlD~~~~----gG~----~ls~~~~~g-----~PI~fig~--Ge~vdd 280 (443)
T 3dm5_A 241 IGSIIVTKLDGSAK----GGG----ALSAVAATG-----APIKFIGT--GEKIDD 280 (443)
T ss_dssp TEEEEEECCSSCSS----HHH----HHHHHHTTC-----CCEEEEEC--SSSTTC
T ss_pred CeEEEEECCCCccc----ccH----HHHHHHHHC-----CCEEEEEc--CCChHH
Confidence 35789999998642 111 111222223 46666664 998865
No 212
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.49 E-value=6.8e-07 Score=94.06 Aligned_cols=142 Identities=18% Similarity=0.262 Sum_probs=79.7
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeC--C
Q 004209 340 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK--N 417 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~--~ 417 (768)
.++|+++|+.|+|||||++.|++...... ..+ ...|.. .......+++.. .+... .
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~-G~i-------~~~g~~---------i~~~~~~~~i~~-----v~q~~~~~ 59 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRK-ASS-------WNREEK---------IPKTVEIKAIGH-----VIEEGGVK 59 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC-----------------------------CCCCCSCCEEEE-----SCC----C
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCC-Ccc-------ccCCcc---------cCcceeeeeeEE-----EeecCCCc
Confidence 36899999999999999999996432110 000 000000 000000111111 11111 2
Q ss_pred eEEEEEeCCCccc-------------hHH-----HHHHh----------cccCCEEEEEEecC-CCccccccccchhhhH
Q 004209 418 YHVVVLDSPGHKD-------------FVP-----NMISG----------ATQSDAAILVIDAS-VGSFEVGMNTAKGLTR 468 (768)
Q Consensus 418 ~~i~lIDTPGh~~-------------f~~-----~~i~g----------~~~aD~aILVVDA~-~g~~e~~~~~~~~qt~ 468 (768)
..++++|+||... ++. ..... ++.+.++++++|.. +| +.+...
T Consensus 60 ~~ltv~d~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~g--------L~~lD~ 131 (270)
T 3sop_A 60 MKLTVIDTPGFGDQINNENCWEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHS--------LRPLDL 131 (270)
T ss_dssp CEEEEECCCC--CCSBCTTCSHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSS--------CCHHHH
T ss_pred CCceEEechhhhhhcccHHHHHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCc--------CCHHHH
Confidence 3689999999422 111 11111 22368899999955 44 345666
Q ss_pred HHHHHHHHcCCCeEEEEEecccccccchhhHHHHHHHHhHHHhhcCC
Q 004209 469 EHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGF 515 (768)
Q Consensus 469 e~l~ll~~lgip~iIVVvNKmDlv~~s~e~~~~i~~el~~~lk~~g~ 515 (768)
+.+..+... ++ +|+|+||+|.+. .+.....+..+...++..++
T Consensus 132 ~~l~~L~~~-~~-vI~Vi~K~D~lt--~~e~~~~k~~i~~~l~~~~i 174 (270)
T 3sop_A 132 EFMKHLSKV-VN-IIPVIAKADTMT--LEEKSEFKQRVRKELEVNGI 174 (270)
T ss_dssp HHHHHHHTT-SE-EEEEETTGGGSC--HHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhc-Cc-EEEEEeccccCC--HHHHHHHHHHHHHHHHHcCc
Confidence 777766665 55 999999999986 45566677777777766554
No 213
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.46 E-value=1.1e-07 Score=105.37 Aligned_cols=84 Identities=21% Similarity=0.126 Sum_probs=49.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeC--
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK-- 416 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~-- 416 (768)
...+|+|+|.+|+|||||+++|++.... ....+++|++.....+...
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~-------------------------------~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQAS-------------------------------AENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC--------------------------------------------CCSEEEEECCCH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcc-------------------------------ccCCCccccCceeEEEEECCc
Confidence 3478999999999999999999953110 0111344444333333222
Q ss_pred ---------------CeEEEEEeCCCccchHH-------HHHHhcccCCEEEEEEecCC
Q 004209 417 ---------------NYHVVVLDSPGHKDFVP-------NMISGATQSDAAILVIDASV 453 (768)
Q Consensus 417 ---------------~~~i~lIDTPGh~~f~~-------~~i~g~~~aD~aILVVDA~~ 453 (768)
...+.||||||+.++.. ..+..++.+|++|+|||+..
T Consensus 70 r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 70 RFDFLCQYHKPASKIPAFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp HHHHHHHHHCCSEEECCEEEEEECCC-----------CCHHHHHHHTSSSEEEEEEC--
T ss_pred cceeeccccCcccccccccEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCC
Confidence 23599999999877544 45677889999999999975
No 214
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.43 E-value=1e-07 Score=106.97 Aligned_cols=67 Identities=27% Similarity=0.417 Sum_probs=42.0
Q ss_pred CCeEEEEEeCCCccc----hHHHHH--HhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCC-CeEEEEEec
Q 004209 416 KNYHVVVLDSPGHKD----FVPNMI--SGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGV-DQLIVAVNK 488 (768)
Q Consensus 416 ~~~~i~lIDTPGh~~----f~~~~i--~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgi-p~iIVVvNK 488 (768)
.++.++||||||... +...+. ..+..+|.+++|+||..+. .....+... ..++ +...+|+||
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~----------~~~~~~~~~-~~~~~~i~gvVlnK 247 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ----------QAGIQAKAF-KEAVGEIGSIIVTK 247 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG----------GHHHHHHHH-HTTSCSCEEEEEEC
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH----------HHHHHHHHH-hhcccCCeEEEEeC
Confidence 567899999999554 333332 2233699999999998651 112222211 2234 546889999
Q ss_pred ccccc
Q 004209 489 MDAVQ 493 (768)
Q Consensus 489 mDlv~ 493 (768)
+|...
T Consensus 248 ~D~~~ 252 (432)
T 2v3c_C 248 LDGSA 252 (432)
T ss_dssp SSSCS
T ss_pred CCCcc
Confidence 99753
No 215
>1nj3_A NPL4; NZF domain, rubredoxin knuckle, beta-ribbon, zinc- finger, ubiquitin, protein binding; NMR {Rattus norvegicus} SCOP: g.41.11.1 PDB: 1q5w_A
Probab=98.41 E-value=9.6e-08 Score=67.17 Aligned_cols=26 Identities=35% Similarity=1.072 Sum_probs=24.8
Q ss_pred CceeecccccCCCCCcccccccCCCC
Q 004209 49 RVWSCAICTYDNEEGMSVCDICGVLR 74 (768)
Q Consensus 49 ~~w~c~~c~~~n~~~~~~c~~c~~~r 74 (768)
..|.|+.|||.|+..+..||||+.+|
T Consensus 5 ~~W~C~~CTf~N~~~~~~Ce~C~~~r 30 (31)
T 1nj3_A 5 AMWACQHCTFMNQPGTGHCEMCSLPR 30 (31)
T ss_dssp CCEECSSSCCEECSSCSSCSSSCCCC
T ss_pred ccccCCcccccCCCCCCccCCcCCCC
Confidence 46999999999999999999999998
No 216
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.40 E-value=1.8e-06 Score=96.27 Aligned_cols=155 Identities=19% Similarity=0.136 Sum_probs=85.6
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC-e
Q 004209 340 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN-Y 418 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~-~ 418 (768)
...|+|+|+.|||||||++.|++.... . +|+. ..+.....+ .+. .+.... .
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p-~---------------~GsI----~~~g~~~t~-~~~-------v~q~~~~~ 120 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNE-E---------------EGAA----KTGVVEVTM-ERH-------PYKHPNIP 120 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTT-S---------------TTSC----CCCC----C-CCE-------EEECSSCT
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCc-c---------------CceE----EECCeecce-eEE-------eccccccC
Confidence 458999999999999999999963110 0 0111 001000001 111 122222 3
Q ss_pred EEEEEeCCCccc---hHHHHHH--hcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccc
Q 004209 419 HVVVLDSPGHKD---FVPNMIS--GATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ 493 (768)
Q Consensus 419 ~i~lIDTPGh~~---f~~~~i~--g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~ 493 (768)
.++++|+||... -+...+. ++...+..++ ++...+ +.|....+..+...+.| +++|+||.|++-
T Consensus 121 ~ltv~D~~g~~~~~~~~~~~L~~~~L~~~~~~~~-lS~G~~---------~kqrv~la~aL~~~~~p-~~lV~tkpdlll 189 (413)
T 1tq4_A 121 NVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFII-ISATRF---------KKNDIDIAKAISMMKKE-FYFVRTKVDSDI 189 (413)
T ss_dssp TEEEEECCCGGGSSCCHHHHHHHTTGGGCSEEEE-EESSCC---------CHHHHHHHHHHHHTTCE-EEEEECCHHHHH
T ss_pred CeeehHhhcccchHHHHHHHHHHcCCCccCCeEE-eCCCCc---------cHHHHHHHHHHHhcCCC-eEEEEecCcccc
Confidence 689999999531 2333333 3344565554 777543 34555566666667877 899999999762
Q ss_pred c-------chhhHHHHHHHHhHHH----hhcCCCCCCCcEEEeec--ccCCCccc
Q 004209 494 Y-------SKDRFDSIKVQLGTFL----RSCGFKDASLTWIPLSA--LENQNLVT 535 (768)
Q Consensus 494 ~-------s~e~~~~i~~el~~~l----k~~g~~~~~i~~IpVSA--~tG~gI~e 535 (768)
. +....+.+.+.+..+. ...|.. ...+|++|+ +.+.|+.+
T Consensus 190 LDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~--~~~iiliSsh~l~~~~~e~ 242 (413)
T 1tq4_A 190 TNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIA--EPPIFLLSNKNVCHYDFPV 242 (413)
T ss_dssp HHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCS--SCCEEECCTTCTTSTTHHH
T ss_pred cCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCC--CCcEEEEecCcCCccCHHH
Confidence 1 1112233444444443 233322 236799999 66667755
No 217
>2d9g_A YY1-associated factor 2; ZF-ranbp domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.39 E-value=1.2e-07 Score=74.89 Aligned_cols=33 Identities=24% Similarity=0.734 Sum_probs=29.2
Q ss_pred cCCCCCceeecccccCCCCCcccccccCCCCCc
Q 004209 44 ETSKPRVWSCAICTYDNEEGMSVCDICGVLRTP 76 (768)
Q Consensus 44 ~~~~~~~w~c~~c~~~n~~~~~~c~~c~~~r~~ 76 (768)
....++.|.|+.|||.|+..+..||||+++|..
T Consensus 5 ~~~~~~~W~C~~CT~~N~~~~~~C~~C~~pr~~ 37 (53)
T 2d9g_A 5 SSGDEGYWDCSVCTFRNSAEAFKCMMCDVRKGT 37 (53)
T ss_dssp CSSCCCCEECSSSCCEECSSCSSCSSSCCCCCC
T ss_pred CCCCCCCcCCCCCccCCCCCCCccCCCCCcCCc
Confidence 344667899999999999999999999999974
No 218
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.35 E-value=1.3e-06 Score=97.80 Aligned_cols=163 Identities=19% Similarity=0.259 Sum_probs=85.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhC------------ccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEE
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFLLG------------RITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITM 406 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~------------~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTi 406 (768)
++..|+++|.+|+||||++..|..... .......+++...+...+...+......+ +... .
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~d--p~~i-----~ 168 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQN--PIEI-----A 168 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSC--HHHH-----H
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCC--HHHH-----H
Confidence 457889999999999999999985431 11222333333333333332221000000 0000 0
Q ss_pred EEEEEEEeeCCeEEEEEeCCCccc------hHHHHH--HhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHH-Hc
Q 004209 407 TVAVAYFDSKNYHVVVLDSPGHKD------FVPNMI--SGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR-SF 477 (768)
Q Consensus 407 d~~~~~~~~~~~~i~lIDTPGh~~------f~~~~i--~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~-~l 477 (768)
..+...+...++.++||||||... ++.++. ..+..+|.++||+||..|. .....+.... .+
T Consensus 169 ~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq----------~a~~~a~~f~~~~ 238 (433)
T 3kl4_A 169 KKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQ----------KAYDLASRFHQAS 238 (433)
T ss_dssp HHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGG----------GGHHHHHHHHHHC
T ss_pred HHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccch----------HHHHHHHHHhccc
Confidence 000011112468899999999533 344432 2344689999999998651 2222222222 33
Q ss_pred CCCeEEEEEecccccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 478 GVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 478 gip~iIVVvNKmDlv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
++ ..||+||+|... +...+... ....+ +|+.+++. |+++.+
T Consensus 239 ~~--~gVIlTKlD~~a----~~G~als~----~~~~g-----~Pi~fig~--Ge~v~d 279 (433)
T 3kl4_A 239 PI--GSVIITKMDGTA----KGGGALSA----VVATG-----ATIKFIGT--GEKIDE 279 (433)
T ss_dssp SS--EEEEEECGGGCS----CHHHHHHH----HHHHT-----CEEEEEEC--CSSSSC
T ss_pred CC--cEEEEecccccc----cchHHHHH----HHHHC-----CCEEEEEC--CCChHh
Confidence 43 578999999763 11111111 11223 46677774 888854
No 219
>3a9j_C Mitogen-activated protein kinase kinase kinase 7- interacting protein 2; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 2wwz_C 2wx0_C 2wx1_C 3a9k_C
Probab=98.32 E-value=2.1e-07 Score=66.89 Aligned_cols=28 Identities=29% Similarity=0.806 Sum_probs=25.9
Q ss_pred CCceeecccccCCCCCcccccccCCCCC
Q 004209 48 PRVWSCAICTYDNEEGMSVCDICGVLRT 75 (768)
Q Consensus 48 ~~~w~c~~c~~~n~~~~~~c~~c~~~r~ 75 (768)
...|.|+.|||.|+.....||||+++|.
T Consensus 6 ~~~W~C~~CT~~N~~~~~~Ce~C~~~r~ 33 (34)
T 3a9j_C 6 GAQWNCTACTFLNHPALIRCEQCEMPRH 33 (34)
T ss_dssp CCCEECTTTCCEECTTCSBCTTTCCBSC
T ss_pred CCcCCCCCCccccCCCCCeeCCCCCcCc
Confidence 3469999999999999999999999986
No 220
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.22 E-value=1.5e-06 Score=96.26 Aligned_cols=84 Identities=21% Similarity=0.138 Sum_probs=57.2
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC--
Q 004209 340 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN-- 417 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~-- 417 (768)
..+|+|+|++|+|||||+++|++...... ...+++|++.....+...+
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~------------------------------~~~p~tTi~p~~G~v~v~~~r 69 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITKSVLGNP------------------------------ANYPYATIDPEEAKVAVPDER 69 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHSTTTST------------------------------TCCSSCCCCTTEEEEEECCHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCcccc------------------------------cCCCceeecceeeeeeeCCcc
Confidence 47899999999999999999996321110 1114444443333333332
Q ss_pred ---------------eEEEEEeCCCccc-------hHHHHHHhcccCCEEEEEEecCC
Q 004209 418 ---------------YHVVVLDSPGHKD-------FVPNMISGATQSDAAILVIDASV 453 (768)
Q Consensus 418 ---------------~~i~lIDTPGh~~-------f~~~~i~g~~~aD~aILVVDA~~ 453 (768)
..+.++|+||... +....+..+..+|.+++|+|+..
T Consensus 70 ~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 70 FDWLCEAYKPKSRVPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp HHHHHHHHCCSEEECEEEEEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred hhhhhhhcccccccCcceEEEeccccccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4689999999433 34456677789999999999874
No 221
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.21 E-value=1.5e-06 Score=92.76 Aligned_cols=99 Identities=13% Similarity=0.077 Sum_probs=67.4
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccchhh
Q 004209 419 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 498 (768)
Q Consensus 419 ~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~e~ 498 (768)
.+.|||| +++|...+...++.+|++|+|+|++...+ .+ ......+..+...++| +|+|+||+|+.+. ..
T Consensus 64 ~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~--s~----~~l~~~l~~~~~~~~p-iilv~NK~DL~~~--~~ 132 (301)
T 1u0l_A 64 SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPET--ST----YIIDKFLVLAEKNELE-TVMVINKMDLYDE--DD 132 (301)
T ss_dssp SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCC--CH----HHHHHHHHHHHHTTCE-EEEEECCGGGCCH--HH
T ss_pred eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCC--CH----HHHHHHHHHHHHCCCC-EEEEEeHHHcCCc--hh
Confidence 7899999 88887666778899999999999997531 11 1223333344556777 8999999999752 22
Q ss_pred HHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 499 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 499 ~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
. +++..+++.+.- . .+++++||++|.|+.+
T Consensus 133 v----~~~~~~~~~~~~--~-~~~~~~SAktg~gv~~ 162 (301)
T 1u0l_A 133 L----RKVRELEEIYSG--L-YPIVKTSAKTGMGIEE 162 (301)
T ss_dssp H----HHHHHHHHHHTT--T-SCEEECCTTTCTTHHH
T ss_pred H----HHHHHHHHHHhh--h-CcEEEEECCCCcCHHH
Confidence 1 222333333221 1 5789999999999976
No 222
>2crc_A Ubiquitin conjugating enzyme 7 interacting protein 3; ZF-ranbp domain, hepatitis B virus X-associated protein 4, HBV associated factor 4; NMR {Homo sapiens}
Probab=98.13 E-value=1.1e-06 Score=68.95 Aligned_cols=30 Identities=30% Similarity=0.715 Sum_probs=27.0
Q ss_pred CCCceeecccccCCCCCcccccccCCCCCc
Q 004209 47 KPRVWSCAICTYDNEEGMSVCDICGVLRTP 76 (768)
Q Consensus 47 ~~~~w~c~~c~~~n~~~~~~c~~c~~~r~~ 76 (768)
....|.|..|||.|+.....||||+.+|..
T Consensus 7 ~~~~W~Cp~CTf~N~p~~~~CemC~~prp~ 36 (52)
T 2crc_A 7 GPVGWQCPGCTFINKPTRPGCEMCCRARPE 36 (52)
T ss_dssp CSSSBCCTTTCCCBCTTCSSCSSSCCCCCT
T ss_pred CCCCccCCCcccccCCCCCeeCCCCCcCCc
Confidence 344799999999999999999999999964
No 223
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.12 E-value=4.8e-06 Score=88.82 Aligned_cols=66 Identities=23% Similarity=0.371 Sum_probs=42.4
Q ss_pred CCeEEEEEeCCCccc--hHHHHH------HhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEe
Q 004209 416 KNYHVVVLDSPGHKD--FVPNMI------SGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVN 487 (768)
Q Consensus 416 ~~~~i~lIDTPGh~~--f~~~~i------~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvN 487 (768)
.++.++||||||... .-..+. ..+..+|.+++|+|+..+ ....+.+..... .++...+|+|
T Consensus 179 ~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g----------~~~~~~~~~~~~-~~~i~gvVln 247 (297)
T 1j8m_F 179 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG----------QKAYDLASKFNQ-ASKIGTIIIT 247 (297)
T ss_dssp TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG----------GGHHHHHHHHHH-TCTTEEEEEE
T ss_pred CCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch----------HHHHHHHHHHHh-hCCCCEEEEe
Confidence 577899999999665 322221 345679999999999753 122222322222 3453578999
Q ss_pred ccccc
Q 004209 488 KMDAV 492 (768)
Q Consensus 488 KmDlv 492 (768)
|+|..
T Consensus 248 k~D~~ 252 (297)
T 1j8m_F 248 KMDGT 252 (297)
T ss_dssp CGGGC
T ss_pred CCCCC
Confidence 99975
No 224
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=98.10 E-value=2.2e-06 Score=95.14 Aligned_cols=88 Identities=19% Similarity=0.162 Sum_probs=58.8
Q ss_pred eEEEEEEEEEeeCCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCC---ccccc-cccchhhhHHHHHHHHH---
Q 004209 404 ITMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVG---SFEVG-MNTAKGLTREHAQLIRS--- 476 (768)
Q Consensus 404 iTid~~~~~~~~~~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g---~~e~~-~~~~~~qt~e~l~ll~~--- 476 (768)
.|+.+....|..++..+.||||+|++.|...+......++++|+|+|.+.- .+|.. ...+ ......+..+..
T Consensus 203 ~TiGi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~-~e~~~~~~~i~~~~~ 281 (402)
T 1azs_C 203 LTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRL-QEALNLFKSIWNNRW 281 (402)
T ss_dssp CCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHH-HHHHHHHHHHHTCTT
T ss_pred ceeeeEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchH-HHHHHHHHHHHhccc
Confidence 344445566777889999999999999999999999999999999999861 00000 0110 112222222221
Q ss_pred -cCCCeEEEEEecccccc
Q 004209 477 -FGVDQLIVAVNKMDAVQ 493 (768)
Q Consensus 477 -lgip~iIVVvNKmDlv~ 493 (768)
.++| +|||.||+|+..
T Consensus 282 ~~~~p-iiLvgNK~DL~~ 298 (402)
T 1azs_C 282 LRTIS-VILFLNKQDLLA 298 (402)
T ss_dssp CSSCC-EEEEEECHHHHH
T ss_pred CCCCe-EEEEEEChhhhh
Confidence 2456 899999999853
No 225
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=97.99 E-value=3.1e-06 Score=92.56 Aligned_cols=73 Identities=16% Similarity=0.105 Sum_probs=48.5
Q ss_pred CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCC-------CccccccccchhhhHHHHHHHHH----cCCCeEEE
Q 004209 416 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASV-------GSFEVGMNTAKGLTREHAQLIRS----FGVDQLIV 484 (768)
Q Consensus 416 ~~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~-------g~~e~~~~~~~~qt~e~l~ll~~----lgip~iIV 484 (768)
....+.||||+|+++|...+......++++|+|+|.+. ..-...|. .....+..+.. .++| +|+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~----~~~~~~~~i~~~~~~~~~p-iiL 255 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMM----ETKELFDWVLKQPCFEKTS-FML 255 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHH----HHHHHHHHHHTCGGGSSCE-EEE
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHH----HHHHHHHHHHhccccCCCe-EEE
Confidence 35789999999999999999999999999999999871 10011111 12222222221 2455 899
Q ss_pred EEecccccc
Q 004209 485 AVNKMDAVQ 493 (768)
Q Consensus 485 VvNKmDlv~ 493 (768)
|.||+|+..
T Consensus 256 vgNK~DL~~ 264 (354)
T 2xtz_A 256 FLNKFDIFE 264 (354)
T ss_dssp EEECHHHHH
T ss_pred EEECcchhh
Confidence 999999853
No 226
>3b08_B Ranbp-type and C3HC4-type zinc finger-containing; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Mus musculus} PDB: 3b0a_B*
Probab=97.98 E-value=1.9e-06 Score=70.23 Aligned_cols=28 Identities=29% Similarity=0.688 Sum_probs=26.0
Q ss_pred CceeecccccCCCCCcccccccCCCCCc
Q 004209 49 RVWSCAICTYDNEEGMSVCDICGVLRTP 76 (768)
Q Consensus 49 ~~w~c~~c~~~n~~~~~~c~~c~~~r~~ 76 (768)
..|.|..|||.|+.....||||+.+|..
T Consensus 7 ~~W~CP~CTf~N~p~~p~CEmC~~prp~ 34 (64)
T 3b08_B 7 VGWQCPGCTFINKPTRPGCEMCCRARPE 34 (64)
T ss_dssp CSEECTTTCCEECTTCSBCTTTCCBCCS
T ss_pred CCCcCCCccccCCCCCCccCcCCCCCCc
Confidence 3699999999999999999999999964
No 227
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.97 E-value=1.3e-05 Score=84.69 Aligned_cols=92 Identities=15% Similarity=0.152 Sum_probs=58.1
Q ss_pred EEeCCCcc-chHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccchhhHH
Q 004209 422 VLDSPGHK-DFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFD 500 (768)
Q Consensus 422 lIDTPGh~-~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~e~~~ 500 (768)
|-..|||. +..+.+...+..+|++|+|+||..+... ...+ +...++-++.++|+||+|+++ .+.
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~--------~~~~---l~~~l~~kp~ilVlNK~DL~~--~~~-- 67 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSS--------RNPM---IEDILKNKPRIMLLNKADKAD--AAV-- 67 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTT--------SCHH---HHHHCSSSCEEEEEECGGGSC--HHH--
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCcc--------CCHH---HHHHHCCCCEEEEEECcccCC--HHH--
Confidence 45679988 5778889999999999999999986311 1111 122233334899999999985 222
Q ss_pred HHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 501 SIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 501 ~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
.+....+++..+ ++++++||.+|.|+.+
T Consensus 68 --~~~~~~~~~~~g-----~~~i~iSA~~~~gi~~ 95 (282)
T 1puj_A 68 --TQQWKEHFENQG-----IRSLSINSVNGQGLNQ 95 (282)
T ss_dssp --HHHHHHHHHTTT-----CCEEECCTTTCTTGGG
T ss_pred --HHHHHHHHHhcC-----CcEEEEECCCcccHHH
Confidence 223333443333 4679999999999965
No 228
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.86 E-value=3.7e-05 Score=86.15 Aligned_cols=65 Identities=22% Similarity=0.334 Sum_probs=40.1
Q ss_pred CCeEEEEEeCCCccchHHHH------HHhcccCCEEEEEEecCCCccccccccchhhhHHHHHH-HHHcCCCeEEEEEec
Q 004209 416 KNYHVVVLDSPGHKDFVPNM------ISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQL-IRSFGVDQLIVAVNK 488 (768)
Q Consensus 416 ~~~~i~lIDTPGh~~f~~~~------i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~l-l~~lgip~iIVVvNK 488 (768)
.++.++||||||...+...+ +..+..+|.+++|+|+..+. .....+.. -..+++. .||+||
T Consensus 182 ~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~----------~~~~~~~~f~~~l~i~--gvVlnK 249 (433)
T 2xxa_A 182 KFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQ----------DAANTAKAFNEALPLT--GVVLTK 249 (433)
T ss_dssp TTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCT----------THHHHHHHHHHHSCCC--CEEEEC
T ss_pred CCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhH----------HHHHHHHHHhccCCCe--EEEEec
Confidence 57889999999964432222 22345799999999998651 11112211 1234443 468999
Q ss_pred cccc
Q 004209 489 MDAV 492 (768)
Q Consensus 489 mDlv 492 (768)
+|..
T Consensus 250 ~D~~ 253 (433)
T 2xxa_A 250 VDGD 253 (433)
T ss_dssp TTSS
T ss_pred CCCC
Confidence 9975
No 229
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.85 E-value=0.00012 Score=79.18 Aligned_cols=92 Identities=21% Similarity=0.255 Sum_probs=53.5
Q ss_pred CeEEEEEeCCCcc----chHHHH--HHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHH-HHcCCCeEEEEEecc
Q 004209 417 NYHVVVLDSPGHK----DFVPNM--ISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLI-RSFGVDQLIVAVNKM 489 (768)
Q Consensus 417 ~~~i~lIDTPGh~----~f~~~~--i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll-~~lgip~iIVVvNKm 489 (768)
++.+.++||+|.. .+...+ +..+..+|-.++|+|+..+ .+..+.+... ..+++. +|++||+
T Consensus 211 ~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~----------~~~~~~~~~~~~~~~it--~iilTKl 278 (328)
T 3e70_C 211 GIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAG----------NAIVEQARQFNEAVKID--GIILTKL 278 (328)
T ss_dssp TCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT----------THHHHHHHHHHHHSCCC--EEEEECG
T ss_pred cchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHH----------HHHHHHHHHHHHhcCCC--EEEEeCc
Confidence 4567889999953 233333 2223458999999998765 1333333333 346665 6889999
Q ss_pred cccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 490 DAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 490 Dlv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
|.... .-.+. .++...+ .|+..++ +|+++.+
T Consensus 279 D~~a~----~G~~l----~~~~~~~-----~pi~~i~--~Ge~v~d 309 (328)
T 3e70_C 279 DADAR----GGAAL----SISYVID-----APILFVG--VGQGYDD 309 (328)
T ss_dssp GGCSC----CHHHH----HHHHHHT-----CCEEEEE--CSSSTTC
T ss_pred CCccc----hhHHH----HHHHHHC-----CCEEEEe--CCCCccc
Confidence 96431 11111 2222233 4666666 8888855
No 230
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.80 E-value=1.4e-05 Score=84.59 Aligned_cols=58 Identities=28% Similarity=0.271 Sum_probs=35.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCe
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 418 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~ 418 (768)
..++|+++|.+|+|||||+|+|++..... ....+|+|.+.....+ +.
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~~~~------------------------------~~~~~g~T~~~~~~~~---~~ 165 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKNIAK------------------------------TGDRPGITTSQQWVKV---GK 165 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCCC------------------------------------------CCEEE---TT
T ss_pred CCceEEEEecCCCchHHHHHHHhcCceee------------------------------cCCCCCeeeeeEEEEe---CC
Confidence 46899999999999999999999532111 1123566766543322 34
Q ss_pred EEEEEeCCCcc
Q 004209 419 HVVVLDSPGHK 429 (768)
Q Consensus 419 ~i~lIDTPGh~ 429 (768)
.+.|+||||..
T Consensus 166 ~~~l~DtpG~~ 176 (282)
T 1puj_A 166 ELELLDTPGIL 176 (282)
T ss_dssp TEEEEECCCCC
T ss_pred CEEEEECcCcC
Confidence 79999999953
No 231
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.79 E-value=4.7e-05 Score=81.22 Aligned_cols=84 Identities=17% Similarity=0.203 Sum_probs=57.0
Q ss_pred HhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccchhhHHHHHHHHhHHHhhcCCC
Q 004209 437 SGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFK 516 (768)
Q Consensus 437 ~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~e~~~~i~~el~~~lk~~g~~ 516 (768)
..++.+|.+|+|+|++++.+. + ....+.+..+...++| +|+|+||+|+.+. ...+ ...++..+.+.++
T Consensus 75 ~~~~naD~vliV~d~~~p~~s--~----~~l~~~l~~~~~~~~~-~ilV~NK~DL~~~--~~v~-~~~~~~~~~~~~g-- 142 (302)
T 2yv5_A 75 PKVANVDRVIIVETLKMPEFN--N----YLLDNMLVVYEYFKVE-PVIVFNKIDLLNE--EEKK-ELERWISIYRDAG-- 142 (302)
T ss_dssp TEEESCCEEEEEECSTTTTCC--H----HHHHHHHHHHHHTTCE-EEEEECCGGGCCH--HHHH-HHHHHHHHHHHTT--
T ss_pred HHHHhcCEEEEEEECCCCCCC--H----HHHHHHHHHHHhCCCC-EEEEEEcccCCCc--cccH-HHHHHHHHHHHCC--
Confidence 468899999999999976321 1 2334455556667888 7899999999852 2111 1233344444445
Q ss_pred CCCCcEEEeecccCCCccc
Q 004209 517 DASLTWIPLSALENQNLVT 535 (768)
Q Consensus 517 ~~~i~~IpVSA~tG~gI~e 535 (768)
++++++||++|.|+.+
T Consensus 143 ---~~~~~~SA~~g~gi~~ 158 (302)
T 2yv5_A 143 ---YDVLKVSAKTGEGIDE 158 (302)
T ss_dssp ---CEEEECCTTTCTTHHH
T ss_pred ---CeEEEEECCCCCCHHH
Confidence 3689999999999976
No 232
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=97.71 E-value=8.9e-06 Score=94.34 Aligned_cols=26 Identities=35% Similarity=0.327 Sum_probs=23.1
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHh
Q 004209 338 MTQLNLAIVGHVDSGKSTLSGRLLFL 363 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~ 363 (768)
.+.++|+|+|.+|+|||||+|+|++.
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~ 61 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGK 61 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTC
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCC
Confidence 35688999999999999999999953
No 233
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.70 E-value=3.1e-05 Score=87.80 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=22.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHh
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFL 363 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~ 363 (768)
..-.|+|+|..|+|||||++.|.+.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgl 316 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQ 316 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHH
Confidence 3457999999999999999999865
No 234
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.69 E-value=4.4e-05 Score=83.73 Aligned_cols=101 Identities=10% Similarity=0.044 Sum_probs=61.7
Q ss_pred EEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccchhhH
Q 004209 420 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRF 499 (768)
Q Consensus 420 i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~e~~ 499 (768)
+.-++++ +++|..........++++|+|||+++.. ..+ .....+. + .+.| +|+|+||+|+++. ....
T Consensus 51 ~~~v~~~-~e~f~~~L~~~~~~~~lil~VvD~~d~~--~s~---~~~l~~~---l--~~~p-iilV~NK~DLl~~-~~~~ 117 (369)
T 3ec1_A 51 VQDVPLD-DDDFLSMLHRIGESKALVVNIVDIFDFN--GSF---IPGLPRF---A--ADNP-ILLVGNKADLLPR-SVKY 117 (369)
T ss_dssp ---------CHHHHHHHHHHHHCCEEEEEEETTCSG--GGC---CSSHHHH---C--TTSC-EEEEEECGGGSCT-TCCH
T ss_pred ccCCcCC-HHHHHHHHHHhhccCcEEEEEEECCCCC--Cch---hhHHHHH---h--CCCC-EEEEEEChhcCCC-ccCH
Confidence 3344444 6777776666668899999999999753 111 1122222 1 1455 8999999999863 2223
Q ss_pred HHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 500 DSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 500 ~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
+.+.+.+..+++..|+.. ..++++||++|.|+.+
T Consensus 118 ~~~~~~l~~~~~~~g~~~--~~v~~iSA~~g~gi~~ 151 (369)
T 3ec1_A 118 PKLLRWMRRMAEELGLCP--VDVCLVSAAKGIGMAK 151 (369)
T ss_dssp HHHHHHHHHHHHTTTCCC--SEEEECBTTTTBTHHH
T ss_pred HHHHHHHHHHHHHcCCCc--ccEEEEECCCCCCHHH
Confidence 345555566666667632 3679999999999965
No 235
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.66 E-value=4.7e-05 Score=83.51 Aligned_cols=95 Identities=14% Similarity=0.098 Sum_probs=61.0
Q ss_pred CccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccchhhHHHHHHHH
Q 004209 427 GHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQL 506 (768)
Q Consensus 427 Gh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~e~~~~i~~el 506 (768)
..++|.+.+......+|++|+|+|+++. +..+ .....+. + .+.| +|+|+||+|+.+. ....+.+.+.+
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~--~~~~---~~~l~~~---~--~~~p-~ilV~NK~DL~~~-~~~~~~~~~~l 122 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDF--NGSW---LPGLHRF---V--GNNK-VLLVGNKADLIPK-SVKHDKVKHWM 122 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSH--HHHC---CTTHHHH---S--SSSC-EEEEEECGGGSCT-TSCHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCC--cccH---HHHHHHH---h--CCCc-EEEEEEChhcCCc-ccCHHHHHHHH
Confidence 3566777666666778899999999863 1111 1111211 1 2556 8999999999853 22233444555
Q ss_pred hHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 507 GTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 507 ~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
..+++..|+. ..+++++||++|.|+.+
T Consensus 123 ~~~~~~~g~~--~~~v~~iSA~~g~gi~~ 149 (368)
T 3h2y_A 123 RYSAKQLGLK--PEDVFLISAAKGQGIAE 149 (368)
T ss_dssp HHHHHHTTCC--CSEEEECCTTTCTTHHH
T ss_pred HHHHHHcCCC--cccEEEEeCCCCcCHHH
Confidence 5566666753 23689999999999976
No 236
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.59 E-value=0.0003 Score=75.22 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=21.3
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Q 004209 340 QLNLAIVGHVDSGKSTLSGRLLFL 363 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~ 363 (768)
.-.|+++|..|+||||++..|.+.
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~ 127 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKM 127 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHHH
Confidence 457899999999999999999865
No 237
>1d1n_A Initiation factor 2; beta-barrel, gene regulation; NMR {Geobacillus stearothermophilus} SCOP: b.43.3.1
Probab=97.51 E-value=0.00014 Score=64.46 Aligned_cols=77 Identities=17% Similarity=0.303 Sum_probs=67.9
Q ss_pred eeeEeEEeeC-CCcEEEEEEEecCcccCCCEEEEccCCe---eeEEEeeeecccccceeccCCceEEEecccccccccCC
Q 004209 571 MPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGE---VGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSG 646 (768)
Q Consensus 571 ~~I~dv~~~~-~G~V~v~G~V~sG~L~~Gd~v~i~P~~~---~~~VksI~~~~~~v~~A~aGd~V~l~L~gi~~~~i~rG 646 (768)
.-|.++|+++ .|++ +..+|..|.|+.+..+++...+. ..++.|+.++..++.++.+|.-++|.|.+. .+++.|
T Consensus 9 AeVr~vF~isk~g~I-AGc~V~~G~i~r~~~vRv~Rd~~vI~eG~i~SLkr~KddV~EV~~G~ECGi~l~~~--~dik~G 85 (99)
T 1d1n_A 9 AEVRQTFKVSKVGTI-AGCYVTDGKITRDSKVRLIRQGIVVYEGEIDSLKRYKDDVREVAQGYECGLTIKNF--NDIKEG 85 (99)
T ss_dssp EEECCCCCCSSSCCC-EEEEECSSBCCSSSEEEEECSSSEEEEEECSEEECSSSCCSCCBTTCEEEEECTTC--SSCSSC
T ss_pred EEEEEEEEcCCceEE-EEEEEEcCEEEcCCeEEEEECCEEEEEeEEhhhcccccccceECCCcEEEEEEcCc--CCCCCC
Confidence 3466788888 8998 78899999999999999999985 568999999999999999999999999866 478999
Q ss_pred cccc
Q 004209 647 GVLC 650 (768)
Q Consensus 647 ~VL~ 650 (768)
|+|-
T Consensus 86 D~Ie 89 (99)
T 1d1n_A 86 DVIE 89 (99)
T ss_dssp SEEE
T ss_pred CEEE
Confidence 9884
No 238
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.48 E-value=0.00053 Score=76.55 Aligned_cols=135 Identities=18% Similarity=0.189 Sum_probs=67.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCc------------cchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEE
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGR------------ITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITM 406 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~------------i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTi 406 (768)
+...|+++|..|+||||++..|.+.... .......++...+...+-..+.... ...+.+..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~--~~~p~~i~----- 169 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMD--GESPESIR----- 169 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCT--TCCHHHHH-----
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCC--CCCHHHHH-----
Confidence 4457899999999999999999865311 1111122222222222221110000 00000000
Q ss_pred EEEEEEEeeCCeEEEEEeCCCccc----hHHHH--HHhcccCCEEEEEEecCCCccccccccchhhhHHHHHH-HHHcCC
Q 004209 407 TVAVAYFDSKNYHVVVLDSPGHKD----FVPNM--ISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQL-IRSFGV 479 (768)
Q Consensus 407 d~~~~~~~~~~~~i~lIDTPGh~~----f~~~~--i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~l-l~~lgi 479 (768)
......+...++.++||||||... .+..+ +..+..+|.++||+|+..+. .....+.. ...+++
T Consensus 170 ~~~l~~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq----------~av~~a~~f~~~l~i 239 (425)
T 2ffh_A 170 RRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQ----------EALSVARAFDEKVGV 239 (425)
T ss_dssp HHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTT----------HHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHCCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchH----------HHHHHHHHHHhcCCc
Confidence 000000112567899999999533 23322 23344699999999997541 11122221 123444
Q ss_pred CeEEEEEeccccc
Q 004209 480 DQLIVAVNKMDAV 492 (768)
Q Consensus 480 p~iIVVvNKmDlv 492 (768)
..||+||+|..
T Consensus 240 --~GVIlTKlD~~ 250 (425)
T 2ffh_A 240 --TGLVLTKLDGD 250 (425)
T ss_dssp --CEEEEESGGGC
T ss_pred --eEEEEeCcCCc
Confidence 36789999964
No 239
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.47 E-value=0.00022 Score=76.35 Aligned_cols=84 Identities=20% Similarity=0.273 Sum_probs=58.0
Q ss_pred hcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccchhhHHHHHHHHhHHHhhcCCCC
Q 004209 438 GATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKD 517 (768)
Q Consensus 438 g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~e~~~~i~~el~~~lk~~g~~~ 517 (768)
.+..+|.+++|+|+..+.+. .....+.+..+...+++ .++|+||+|+++. +...+..+++....+..|+
T Consensus 83 ~~anvD~v~~V~~~~~p~~~------~~~i~r~L~~~~~~~~~-~vivlnK~DL~~~--~~~~~~~~~~~~~y~~~g~-- 151 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFS------TALLDRFLVLVEANDIQ-PIICITKMDLIED--QDTEDTIQAYAEDYRNIGY-- 151 (307)
T ss_dssp TEECCCEEEEEEESTTTTCC------HHHHHHHHHHHHTTTCE-EEEEEECGGGCCC--HHHHHHHHHHHHHHHHHTC--
T ss_pred HHHhCCEEEEEEeCCCCCCC------HHHHHHHHHHHHHCCCC-EEEEEECCccCch--hhhHHHHHHHHHHHHhCCC--
Confidence 57889999999999987543 12445555556667888 6899999999863 2111122334444445564
Q ss_pred CCCcEEEeecccCCCccc
Q 004209 518 ASLTWIPLSALENQNLVT 535 (768)
Q Consensus 518 ~~i~~IpVSA~tG~gI~e 535 (768)
+++++||.+|.|+.+
T Consensus 152 ---~v~~~sa~~~~g~~~ 166 (307)
T 1t9h_A 152 ---DVYLTSSKDQDSLAD 166 (307)
T ss_dssp ---CEEECCHHHHTTCTT
T ss_pred ---eEEEEecCCCCCHHH
Confidence 579999999999865
No 240
>3gj3_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1 PDB: 2gqe_A
Probab=97.46 E-value=4e-05 Score=54.37 Aligned_cols=29 Identities=21% Similarity=0.609 Sum_probs=25.7
Q ss_pred CCCceeecccccCCCCCcccccccCCCCC
Q 004209 47 KPRVWSCAICTYDNEEGMSVCDICGVLRT 75 (768)
Q Consensus 47 ~~~~w~c~~c~~~n~~~~~~c~~c~~~r~ 75 (768)
..|.|-|+.||+.|......|.+|.++|.
T Consensus 4 ~~g~W~C~~C~~~N~~~~~kC~aC~tpkP 32 (33)
T 3gj3_B 4 GSGTWDCDTCLVQNKPEAVKCVACETPKP 32 (33)
T ss_dssp --CCEECTTTCCEECTTCSBCTTTCCBCC
T ss_pred CCCceeCCcccCCCccccCEEcccCCCCC
Confidence 46789999999999999999999999984
No 241
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.44 E-value=8.9e-05 Score=79.25 Aligned_cols=24 Identities=25% Similarity=0.189 Sum_probs=21.6
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Q 004209 340 QLNLAIVGHVDSGKSTLSGRLLFL 363 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~ 363 (768)
.-.|+|+|+.|||||||++.|.+.
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagl 125 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRY 125 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 457999999999999999999865
No 242
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.43 E-value=7.3e-05 Score=78.19 Aligned_cols=86 Identities=15% Similarity=0.085 Sum_probs=54.3
Q ss_pred CCCccch-HHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccchhhHHHHH
Q 004209 425 SPGHKDF-VPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIK 503 (768)
Q Consensus 425 TPGh~~f-~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~e~~~~i~ 503 (768)
-|||... .+.+...+..+|++|+|+||..+..... .... ++ +.| .|+|+||+|+++ .+..
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~-----~~l~----ll---~k~-~iivlNK~DL~~--~~~~---- 64 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSA-----YGVD----FS---RKE-TIILLNKVDIAD--EKTT---- 64 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSC-----TTSC----CT---TSE-EEEEEECGGGSC--HHHH----
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcC-----hHHH----hc---CCC-cEEEEECccCCC--HHHH----
Confidence 3887754 5678888999999999999998742211 1111 11 666 789999999986 2222
Q ss_pred HHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 504 VQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 504 ~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
+....+++..|+ ++ ++||.+|.|+.+
T Consensus 65 ~~~~~~~~~~g~-----~v-~iSa~~~~gi~~ 90 (262)
T 3cnl_A 65 KKWVEFFKKQGK-----RV-ITTHKGEPRKVL 90 (262)
T ss_dssp HHHHHHHHHTTC-----CE-EECCTTSCHHHH
T ss_pred HHHHHHHHHcCC-----eE-EEECCCCcCHHH
Confidence 233334444443 56 999999999865
No 243
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.39 E-value=0.00076 Score=72.51 Aligned_cols=25 Identities=20% Similarity=0.205 Sum_probs=21.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHh
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFL 363 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~ 363 (768)
+...|+++|..|+||||++..|.+.
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~ 128 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANY 128 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3457899999999999999999865
No 244
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=97.32 E-value=0.00013 Score=73.85 Aligned_cols=172 Identities=13% Similarity=0.095 Sum_probs=80.5
Q ss_pred CCceEEEEEeCC-CCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCc-----------cchhhccccchhhhccCeE
Q 004209 338 MTQLNLAIVGHV-DSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGS-----------FAYAWALDESAEERERGIT 405 (768)
Q Consensus 338 ~~~l~VaIvG~v-daGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s-----------~~~a~~~d~~~~Ere~GiT 405 (768)
...+++|+.|+- ..=+.+|+.+|++......-..+.+ ....|-|+ |++-.+--+...||++..-
T Consensus 14 ~~~pr~amfgpgle~~~~~lv~~~m~~~~~~p~~g~~~----~~~~gigsgv~~~~~~~~~fni~tlys~~~~er~~~~~ 89 (227)
T 3l82_B 14 QNEPRFAMFGPGLEELNTSLVLSLMSSEELCPTAGLPQ----RQIDGIGSGVNFQLNNQHKFNILILYSTTRKERDRARE 89 (227)
T ss_dssp CCCCEEEEECGGGTSSSSCHHHHHHTCCSSCCEECCGG----GCCTTSCCCEEEESSSSCEEEEEECSCC----------
T ss_pred CCCceEEEecCCcccccHHHHHHHhcCCCcccccCCCC----CCcCccccceEEEECCeeEEEEEEeccCcHHHhhhhhh
Confidence 456899999983 3445589999997431110000000 00112221 2222222233444443221
Q ss_pred EEEEEEEEeeCCeEEEEEeCC------CccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHH----HHHH
Q 004209 406 MTVAVAYFDSKNYHVVVLDSP------GHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHA----QLIR 475 (768)
Q Consensus 406 id~~~~~~~~~~~~i~lIDTP------Gh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l----~ll~ 475 (768)
-..+. ..++....+| |+..+...+..++..+|++|+|||+++... ++ .++.+ .++.
T Consensus 90 ~~~~~------~~k~~~~~~~~~~~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R---~e-----ak~EL~eL~~mL~ 155 (227)
T 3l82_B 90 EHTSA------VNKMFSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKR---HE-----WQDEFSHIMAMTD 155 (227)
T ss_dssp ---------------------------------CCHHHHHHHCSEEEEEEECBTTCC---CC-----HHHHHHHHHHHSC
T ss_pred hhhhh------hhhcccccCCCccccCcHHHHHHHHHHHhcCCCEEEEEeccccHhH---HH-----HHHHHHHHHHHhc
Confidence 11111 1123444555 687888888889999999999999987521 11 23222 2222
Q ss_pred H----cCCCeEEEEEecc-cccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 476 S----FGVDQLIVAVNKM-DAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 476 ~----lgip~iIVVvNKm-Dlv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
. .++| ++|..||. |+.+. -...++.+.+. |..+ . ..+.+.++||++|+|+.+
T Consensus 156 ee~~L~gap-LLVlANKqqDlp~A--ms~~EI~e~L~--L~~l--~-R~W~Iq~csA~TGeGL~E 212 (227)
T 3l82_B 156 PAFGSSGRP-LLVLSCISQGDVKR--MPCFYLAHELH--LNLL--N-HPWLVQDTEAETLTGFLN 212 (227)
T ss_dssp TTSSCSCSC-EEEEEEESSTTSCB--CCHHHHHHHTT--GGGG--C-SCEEEEEEETTTCTTHHH
T ss_pred chhhhCCCe-EEEEeCCCcCccCC--CCHHHHHHHcC--CcCC--C-CCEEEEEeECCCCcCHHH
Confidence 1 3677 88888995 67542 12233444333 1222 2 467889999999999976
No 245
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.32 E-value=0.00053 Score=80.06 Aligned_cols=68 Identities=19% Similarity=0.250 Sum_probs=40.9
Q ss_pred CCeEEEEEeCCCccc------------hHHHHHHh-ccc-CCEEEEEEecCCCccccccccchhhhHHHHHHHHH---cC
Q 004209 416 KNYHVVVLDSPGHKD------------FVPNMISG-ATQ-SDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FG 478 (768)
Q Consensus 416 ~~~~i~lIDTPGh~~------------f~~~~i~g-~~~-aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~---lg 478 (768)
....++|+|.||... -+..++.. +.. ..++++|++++... .+.+.+.++.. .|
T Consensus 145 ~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~----------a~~~~l~la~~v~~~g 214 (608)
T 3szr_A 145 DVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDI----------ATTEALSMAQEVDPEG 214 (608)
T ss_dssp SSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCT----------TTCHHHHHHHHHCSSC
T ss_pred CCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchh----------ccHHHHHHHHHHhhcC
Confidence 345799999997322 23344444 344 35677777776532 12334444444 46
Q ss_pred CCeEEEEEeccccccc
Q 004209 479 VDQLIVAVNKMDAVQY 494 (768)
Q Consensus 479 ip~iIVVvNKmDlv~~ 494 (768)
.+ .|+|+||.|+++.
T Consensus 215 ~r-tI~VlTK~Dlv~~ 229 (608)
T 3szr_A 215 DR-TIGILTKPDLVDK 229 (608)
T ss_dssp CS-EEEEEECGGGSSS
T ss_pred Cc-eEEEecchhhcCc
Confidence 66 7999999999863
No 246
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.30 E-value=7.9e-05 Score=77.92 Aligned_cols=22 Identities=36% Similarity=0.439 Sum_probs=20.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHH
Q 004209 341 LNLAIVGHVDSGKSTLSGRLLF 362 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~ 362 (768)
.+|+++|.+|+|||||+|+|++
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~ 121 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKG 121 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHT
T ss_pred hheEEeCCCCCCHHHHHHHHhc
Confidence 6899999999999999999995
No 247
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.27 E-value=0.00083 Score=71.40 Aligned_cols=24 Identities=21% Similarity=0.376 Sum_probs=21.2
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Q 004209 340 QLNLAIVGHVDSGKSTLSGRLLFL 363 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~ 363 (768)
.-.|+++|..|+||||++..|.+.
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~ 128 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAI 128 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999854
No 248
>2crv_A IF-2MT, translation initiation factor IF-2; ribosome, beta barrel, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.19 E-value=0.00072 Score=61.95 Aligned_cols=79 Identities=20% Similarity=0.298 Sum_probs=68.2
Q ss_pred eeeeEeEEeeC-CCc---EEEEEEEecCcccCCCEEEEccCCe---eeEEEeeeecccccceeccCCceEEEeccccccc
Q 004209 570 LMPICDVLKSQ-HGQ---VSACGKLEAGALRSGLKVLVLPSGE---VGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSR 642 (768)
Q Consensus 570 r~~I~dv~~~~-~G~---V~v~G~V~sG~L~~Gd~v~i~P~~~---~~~VksI~~~~~~v~~A~aGd~V~l~L~gi~~~~ 642 (768)
..-|.++|+++ .|+ + +..+|..|.|+.+..+++...+. ..++.|+.++..++.++.+|.-++|.|.+.+. +
T Consensus 12 ~AeVr~vF~isk~g~~~~I-AGC~V~~G~i~r~~~vRviRdg~vI~eG~i~SLkrfKdDVkEV~~G~ECGi~l~~fni-D 89 (120)
T 2crv_A 12 EASILATFTVTEGKKKIPV-ADCRVQKGQLERHKKFKLIRNGQVIWKGSLTSLKHHKDDISVIKTGMDCGLSLDEEKV-E 89 (120)
T ss_dssp EEEEEEEEEEEETTEEEEE-EEEEEEESCEETTSCEEEEETTEEEEEECCSEEESSSSCCSEECTTCEEEEECSCTTS-C
T ss_pred EEEEeEEEEeCCCCceeEE-eEEEEEcCEEEcCCeEEEEECCEEEEEeEehhhcccccccceecCCCEEEEEEccCCC-C
Confidence 35578999988 887 6 77799999999999999999985 56899999999999999999999999986531 6
Q ss_pred ccCCcccc
Q 004209 643 VMSGGVLC 650 (768)
Q Consensus 643 i~rG~VL~ 650 (768)
++.||+|-
T Consensus 90 ik~GDiIE 97 (120)
T 2crv_A 90 FKPGDQVI 97 (120)
T ss_dssp CCTTEEEE
T ss_pred CCCCCEEE
Confidence 88999884
No 249
>2ebq_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.06 E-value=0.00028 Score=54.00 Aligned_cols=33 Identities=18% Similarity=0.496 Sum_probs=29.4
Q ss_pred cCCCCCceeecccccCCCCCcccccccCCCCCc
Q 004209 44 ETSKPRVWSCAICTYDNEEGMSVCDICGVLRTP 76 (768)
Q Consensus 44 ~~~~~~~w~c~~c~~~n~~~~~~c~~c~~~r~~ 76 (768)
-....|.|.|+.|++.|......|-+|++++..
T Consensus 5 ~~~~~g~W~C~~C~v~N~a~~~kC~aCetpKpg 37 (47)
T 2ebq_A 5 SSGVIGTWDCDTCLVQNKPEAIKCVACETPKPG 37 (47)
T ss_dssp CCCCSSSEECSSSCCEECSSCSBCSSSCCBCSC
T ss_pred cCCCCCceECCeeeccCccCCceecCcCCCCCC
Confidence 344789999999999999999999999999853
No 250
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.93 E-value=0.00068 Score=72.29 Aligned_cols=24 Identities=33% Similarity=0.393 Sum_probs=21.6
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Q 004209 340 QLNLAIVGHVDSGKSTLSGRLLFL 363 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~ 363 (768)
.-.|+++|+.|||||||++.|.+.
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 457899999999999999999875
No 251
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.91 E-value=0.00068 Score=74.07 Aligned_cols=25 Identities=32% Similarity=0.379 Sum_probs=22.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHh
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFL 363 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~ 363 (768)
+.-.|+++|..|||||||++.|.+.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhh
Confidence 3457999999999999999999875
No 252
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=96.89 E-value=0.0047 Score=60.52 Aligned_cols=65 Identities=12% Similarity=0.102 Sum_probs=45.8
Q ss_pred CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcC-----CCeEEEEEeccc
Q 004209 416 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFG-----VDQLIVAVNKMD 490 (768)
Q Consensus 416 ~~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lg-----ip~iIVVvNKmD 490 (768)
..+.++|||||+... ..+...+..+|.+|+|+..+... ..+...+..+..++ ++ +.+|+|++|
T Consensus 74 ~~yD~viiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~~---------~~~~~~~~~l~~~~~~~~~~~-~~vv~N~~~ 141 (206)
T 4dzz_A 74 ADYDFAIVDGAGSLS--VITSAAVMVSDLVIIPVTPSPLD---------FSAAGSVVTVLEAQAYSRKVE-ARFLITRKI 141 (206)
T ss_dssp TTSSEEEEECCSSSS--HHHHHHHHHCSEEEEEECSCTTT---------HHHHHHHHHHHTTSCGGGCCE-EEEEECSBC
T ss_pred CCCCEEEEECCCCCC--HHHHHHHHHCCEEEEEecCCHHH---------HHHHHHHHHHHHHHHhCCCCc-EEEEEeccC
Confidence 457899999998663 34455667799999999987541 24455555665553 44 689999999
Q ss_pred cc
Q 004209 491 AV 492 (768)
Q Consensus 491 lv 492 (768)
..
T Consensus 142 ~~ 143 (206)
T 4dzz_A 142 EM 143 (206)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 253
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=96.89 E-value=0.00083 Score=71.05 Aligned_cols=98 Identities=11% Similarity=-0.011 Sum_probs=61.3
Q ss_pred CCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHH---H-cCCCeEEEEEec-ccccccchhhHH
Q 004209 426 PGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR---S-FGVDQLIVAVNK-MDAVQYSKDRFD 500 (768)
Q Consensus 426 PGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~---~-lgip~iIVVvNK-mDlv~~s~e~~~ 500 (768)
.|+..+...+..+...+|++|+|||+++... ++ ......+...++. . .++| ++|..|| .|+.+. -...
T Consensus 195 GGQ~~lRplWr~Yy~~tdglIfVVDSsDreR---le-ak~EL~eL~~mL~e~~~l~~ap-LLVfANKkQDlp~A--ms~~ 267 (312)
T 3l2o_B 195 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKR---HE-WQDEFSHIMAMTDPAFGSSGRP-LLVLSCISQGDVKR--MPCF 267 (312)
T ss_dssp --CCCCCHHHHHHHHHCSEEEECCBCBTTCC---CC-HHHHHHHHHHHHCHHHHCTTCC-EEEEEEESSTTSCB--CCHH
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEecCCcHhH---HH-HHHHHHHHHHHhcchhhcCCCe-EEEEeCCcccccCC--CCHH
Confidence 4688888888899999999999999987531 21 1111112112331 1 4788 8888897 587653 1223
Q ss_pred HHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004209 501 SIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 501 ~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
++.+.+.- ..+ . ..+.+.++||++|+|+.+
T Consensus 268 EI~e~L~L--~~l--~-r~W~Iq~csA~tGeGL~E 297 (312)
T 3l2o_B 268 YLAHELHL--NLL--N-HPWLVQDTEAETLTGFLN 297 (312)
T ss_dssp HHHHHTTG--GGG--C-SCEEEEEEETTTCTTHHH
T ss_pred HHHHHcCC--ccC--C-CcEEEEecccCCCcCHHH
Confidence 34443331 122 2 467889999999999976
No 254
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.87 E-value=0.00083 Score=71.32 Aligned_cols=25 Identities=28% Similarity=0.345 Sum_probs=21.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHh
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFL 363 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~ 363 (768)
....|+++|..|+||||++..|.+.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~ 121 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALY 121 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3457889999999999999999865
No 255
>3gj5_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1
Probab=96.77 E-value=0.00049 Score=49.08 Aligned_cols=29 Identities=21% Similarity=0.670 Sum_probs=25.2
Q ss_pred CCCceeecccccCCCCCcccccccCCCCC
Q 004209 47 KPRVWSCAICTYDNEEGMSVCDICGVLRT 75 (768)
Q Consensus 47 ~~~~w~c~~c~~~n~~~~~~c~~c~~~r~ 75 (768)
.+|.|.|+.|++.|..+...|-+|.+++.
T Consensus 4 ~~G~W~C~~C~v~N~~~~~kC~aCet~Kp 32 (34)
T 3gj5_B 4 GSGSWDCEVCLVQNKADSTKCIACESAKP 32 (34)
T ss_dssp --CCEECTTTCCEECSSCSBCTTTCCBC-
T ss_pred CCCceECCeeEeECccccCEEcccCCcCC
Confidence 56889999999999999999999999874
No 256
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=96.68 E-value=0.0023 Score=72.96 Aligned_cols=90 Identities=21% Similarity=0.290 Sum_probs=73.1
Q ss_pred cCCCCCCCCCCceeeeEeEEeeC-CCcEEEEEEEecCcccCCCEEEEccCCe---eeEEEeeeecccccceeccCCceEE
Q 004209 558 LRPPPREFSKPLLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGE---VGTVHSIERDSQSCSVARAGDNIAV 633 (768)
Q Consensus 558 l~~~~~~~~~plr~~I~dv~~~~-~G~V~v~G~V~sG~L~~Gd~v~i~P~~~---~~~VksI~~~~~~v~~A~aGd~V~l 633 (768)
+..|.....---..-|.++|+.+ .|.+ +..+|..|.|+.|..+.+...+. ..+|.||+++..+++++..|+-|+|
T Consensus 398 ~~~~~~~~~~~g~a~v~~~f~~~~~~~i-aG~~v~~G~~~~~~~~~~~r~~~~i~~g~i~sl~~~k~~v~e~~~g~ecgi 476 (501)
T 1zo1_I 398 MLSPELKQQIIGLAEVRDVFKSPKFGAI-AGCMVTEGVVKRHNPIRVLRDNVVIYEGELESLRRFKDDVNEVRNGMECGI 476 (501)
T ss_dssp TSSTTCCCCCCCCEEEEECSSCCCSSCE-EEEEEEEEEEETTCEEECCSSSCCCEEEEBCCEEETTEEESEEETTCCEEE
T ss_pred hcCceeeeeeeeEEEEEEEEecCCCCEE-EEEEEEeCEEecCCeEEEEeCCeEEEEEEEehhcccCccccEECCCCEEEE
Confidence 34443333333445577889887 7988 78899999999999999988874 6799999999999999999999999
Q ss_pred EecccccccccCCcccc
Q 004209 634 SLQGIDVSRVMSGGVLC 650 (768)
Q Consensus 634 ~L~gi~~~~i~rG~VL~ 650 (768)
.+.+.+ +++.||+|-
T Consensus 477 ~~~~~~--~~~~gd~~~ 491 (501)
T 1zo1_I 477 GVKNYN--DVRTGDVIE 491 (501)
T ss_dssp EBCCCT--TCCTTCEEE
T ss_pred EEcCcC--CCCCCCEEE
Confidence 998763 788999884
No 257
>2ebr_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.65 E-value=0.0011 Score=50.77 Aligned_cols=31 Identities=19% Similarity=0.605 Sum_probs=28.4
Q ss_pred CCCCceeecccccCCCCCcccccccCCCCCc
Q 004209 46 SKPRVWSCAICTYDNEEGMSVCDICGVLRTP 76 (768)
Q Consensus 46 ~~~~~w~c~~c~~~n~~~~~~c~~c~~~r~~ 76 (768)
...|.|.|+.|.+.|......|-+|++++..
T Consensus 7 ~~~gsW~C~~C~v~N~a~~~kC~aC~~pkpg 37 (47)
T 2ebr_A 7 GPEGSWDCELCLVQNKADSTKCLACESAKPG 37 (47)
T ss_dssp SCCSSCCCSSSCCCCCSSCSBCSSSCCBCCC
T ss_pred CCCCeeECCeeecCCcCCcceecCcCCCCCC
Confidence 3678999999999999999999999999954
No 258
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.53 E-value=0.0054 Score=66.91 Aligned_cols=82 Identities=16% Similarity=0.213 Sum_probs=53.9
Q ss_pred hcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccchhhHHHHHHHHhHHHhhcCCCC
Q 004209 438 GATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKD 517 (768)
Q Consensus 438 g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~e~~~~i~~el~~~lk~~g~~~ 517 (768)
-+..+|.+++| +|..+.+. .....+.+..+...+++ .|+|+||+|+++. +..+. .+++...+..+|+
T Consensus 127 i~anvD~v~iv-~a~~P~~~------~~~i~r~L~~a~~~~~~-~iivlNK~DL~~~--~~~~~-~~~~~~~y~~~G~-- 193 (358)
T 2rcn_A 127 IAANIDQIVIV-SAILPELS------LNIIDRYLVGCETLQVE-PLIVLNKIDLLDD--EGMDF-VNEQMDIYRNIGY-- 193 (358)
T ss_dssp EEECCCEEEEE-EESTTTCC------HHHHHHHHHHHHHHTCE-EEEEEECGGGCCH--HHHHH-HHHHHHHHHTTTC--
T ss_pred HHhcCCEEEEE-EeCCCCCC------HHHHHHHHHHHHhcCCC-EEEEEECccCCCc--hhHHH-HHHHHHHHHhCCC--
Confidence 36789999976 55555422 12445566666778998 6899999999862 22111 2233344455565
Q ss_pred CCCcEEEeecccCCCccc
Q 004209 518 ASLTWIPLSALENQNLVT 535 (768)
Q Consensus 518 ~~i~~IpVSA~tG~gI~e 535 (768)
+++++||.+|.|+.+
T Consensus 194 ---~v~~~Sa~~~~gl~~ 208 (358)
T 2rcn_A 194 ---RVLMVSSHTQDGLKP 208 (358)
T ss_dssp ---CEEECBTTTTBTHHH
T ss_pred ---cEEEEecCCCcCHHH
Confidence 579999999999865
No 259
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=96.50 E-value=0.00042 Score=79.24 Aligned_cols=27 Identities=30% Similarity=0.679 Sum_probs=0.0
Q ss_pred ceeecccccCCCCCcccccccCCCCCc
Q 004209 50 VWSCAICTYDNEEGMSVCDICGVLRTP 76 (768)
Q Consensus 50 ~w~c~~c~~~n~~~~~~c~~c~~~r~~ 76 (768)
.-.|+.|||.||++|..|||||++-..
T Consensus 180 ~~~CP~CTF~NHPsl~~CEiCg~~L~~ 206 (566)
T 1w7p_D 180 ENICPACTFANHPQIGNCEICGHRLPN 206 (566)
T ss_dssp ---------------------------
T ss_pred CCCCCcccccCChhhhcccccCCcCCC
Confidence 467999999999999999999987643
No 260
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=96.37 E-value=0.0056 Score=68.71 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=23.2
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHh
Q 004209 338 MTQLNLAIVGHVDSGKSTLSGRLLFL 363 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~ 363 (768)
.+...|+|+|.+++|||||+|+|++.
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHhhh
Confidence 45678999999999999999999964
No 261
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=96.15 E-value=0.011 Score=67.70 Aligned_cols=182 Identities=16% Similarity=0.193 Sum_probs=120.5
Q ss_pred EEEEeCCCccchHHHHHHhccc-CCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEec-ccccccchh
Q 004209 420 VVVLDSPGHKDFVPNMISGATQ-SDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNK-MDAVQYSKD 497 (768)
Q Consensus 420 i~lIDTPGh~~f~~~~i~g~~~-aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNK-mDlv~~s~e 497 (768)
++=-|+-|..+.+...+..+.. -.+-+=|+.+.-| +.++.-+.++...+. +|+.+|= .+. .
T Consensus 343 iik~d~~Gs~ea~~~~l~~~~~~~~~~~~i~~~~vG----------~i~~~Dv~~a~~~~a--~i~~fnv~~~~-----~ 405 (537)
T 3izy_P 343 IVKGDVDGSVEAILNVMDTYDASHECELDLVHFGVG----------DISENDVNLAETFHG--VIYGFNVNAGN-----V 405 (537)
T ss_dssp EEEBCCHHHHHHHHHHHHHCCCCSSCCCCBSCCCBS----------CBCHHHHHHHHHHSC--CEEESSCCBCH-----H
T ss_pred EEEeCCcchHHHHHHHHHhcCCCCcEEEEEEEecCC----------CCCHHHHHHHHhcCC--eEEEecCCCCH-----H
Confidence 3445888988888888877765 4455666666554 466666777776654 5777773 221 1
Q ss_pred hHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCcccCCCCcccccccCCcchhhhhhccCCCCCCCCCCceeeeEeEE
Q 004209 498 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPPPREFSKPLLMPICDVL 577 (768)
Q Consensus 498 ~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e~~~~~~~~~wy~G~~LLe~L~~l~~~~~~~~~plr~~I~dv~ 577 (768)
...+.+..+.. +. ...=|.++. ..+-+++..+.+|.....-.-++-|.++|
T Consensus 406 --------~~~~a~~~~v~-----i~-----~~~iiy~l~-----------~~~~~~~~~~l~~~~~e~~~g~a~v~~~f 456 (537)
T 3izy_P 406 --------IQQLAAKKGVK-----IK-----LHKIIYRLI-----------EDLQEELSSRLPCIVEEHPIGEASILATF 456 (537)
T ss_dssp --------HHHHHHHHTCC-----CB-----CSCSSCCSH-----------HHHHHHHSSSSSCSSSCCCSSEEEEEEEE
T ss_pred --------HHHHHHHcCCe-----EE-----EeChHHHHH-----------HHHHHHHHhccCCceEEEEEEEEEEcCcE
Confidence 11122222321 10 111111100 01333444555555444445677788999
Q ss_pred eeC----CCcEEEEEEEecCcccCCCEEEEccCCe---eeEEEeeeecccccceeccCCceEEEecc-cccccccCCccc
Q 004209 578 KSQ----HGQVSACGKLEAGALRSGLKVLVLPSGE---VGTVHSIERDSQSCSVARAGDNIAVSLQG-IDVSRVMSGGVL 649 (768)
Q Consensus 578 ~~~----~G~V~v~G~V~sG~L~~Gd~v~i~P~~~---~~~VksI~~~~~~v~~A~aGd~V~l~L~g-i~~~~i~rG~VL 649 (768)
.++ .|.+ +..+|..|.|+.|..+.+...+. ..+|.||+++..++.++..|.-|+|.|.+ . .+++.||+|
T Consensus 457 ~~~~~~~~~~i-aG~~v~~G~i~~~~~~r~~r~~~~i~~g~i~slk~~k~~v~ev~~g~ecgi~~~~~~--~~~~~gd~i 533 (537)
T 3izy_P 457 SITEGKKKVPV-AGCRVQKGQIEKQKKFKLIRNGHVIWKGSLISLKHHKDDTSVVKTGMDCGLSLDEEK--IEFKVGDAI 533 (537)
T ss_dssp SSCSSSCCSCE-EEEEECSSEEESSSEEEEESSSSEEEEEECCCCCCSSCCCSEEETTCEEEEESSSSC--SSCSCCCEE
T ss_pred EECCCCccCcE-EEEEEEeCeEeeCCeEEEecCCEEEEEEEEehhcccCcccceEcCCCEEEEEEcCcc--cCCCCCCEE
Confidence 876 4577 78899999999999999999875 67899999999999999999999999987 5 378899987
Q ss_pred c
Q 004209 650 C 650 (768)
Q Consensus 650 ~ 650 (768)
-
T Consensus 534 e 534 (537)
T 3izy_P 534 I 534 (537)
T ss_dssp E
T ss_pred E
Confidence 3
No 262
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=96.05 E-value=0.031 Score=55.71 Aligned_cols=66 Identities=9% Similarity=0.130 Sum_probs=46.3
Q ss_pred CCeEEEEEeCCCc-cchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHc-CCCeEEEEEeccccc
Q 004209 416 KNYHVVVLDSPGH-KDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF-GVDQLIVAVNKMDAV 492 (768)
Q Consensus 416 ~~~~i~lIDTPGh-~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~l-gip~iIVVvNKmDlv 492 (768)
..+.++|||||+. ... .+...+..+|.+|+|+.++... ...+...+..+..+ +.+ +.+|+|++|..
T Consensus 66 ~~yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~~~~--------~~~~~~~~~~l~~~~~~~-~~vv~N~~~~~ 133 (209)
T 3cwq_A 66 PKYQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPDALA--------LDALMLTIETLQKLGNNR-FRILLTIIPPY 133 (209)
T ss_dssp GGCSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSSHHH--------HHHHHHHHHHHHHTCSSS-EEEEECSBCCT
T ss_pred hcCCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCCchh--------HHHHHHHHHHHHhccCCC-EEEEEEecCCc
Confidence 4678999999987 443 2334566899999999887531 23445556666664 566 78999999864
No 263
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=95.68 E-value=0.022 Score=66.24 Aligned_cols=82 Identities=20% Similarity=0.360 Sum_probs=67.9
Q ss_pred CceeeeE--eEEeeCCCcEEEEEEEecCcccCCCEEEEccCC-eeeEEEeeeecccccceeccCCceEEEecccc-cccc
Q 004209 568 PLLMPIC--DVLKSQHGQVSACGKLEAGALRSGLKVLVLPSG-EVGTVHSIERDSQSCSVARAGDNIAVSLQGID-VSRV 643 (768)
Q Consensus 568 plr~~I~--dv~~~~~G~V~v~G~V~sG~L~~Gd~v~i~P~~-~~~~VksI~~~~~~v~~A~aGd~V~l~L~gi~-~~~i 643 (768)
|..+-|. .+|+.+.|.+ +..+|..|.|+.|..|.+ +.+ ...+|.||+++.+++++|..|+-|+|.|.+.. ..++
T Consensus 463 ~~~~~i~~~~~f~~~~~~i-~g~~v~~G~~~~~~~~~~-~~~~~~g~i~sl~~~k~~v~~~~~g~e~gi~~~~~~~~~~~ 540 (594)
T 1g7s_A 463 PASIRLIPKLVFRQSKPAI-GGVEVLTGVIRQGYPLMN-DDGETVGTVESMQDKGENLKSASRGQKVAMAIKDAVYGKTI 540 (594)
T ss_dssp CEEEEEEEEEEEECSSSEE-EEEEEEEEEEETTCEEEC-TTSCEEEEEEEEEETTEEESEEETTCCEEEEEETCCBTTTB
T ss_pred eEEEEEecceEEcCCCCeE-EEEEEecCEEecCCeEEe-cCCcEEEEEehhcccCccccccCCCCEEEEEEeCcccCCCC
Confidence 4455444 6888877776 778999999999999998 666 47899999999999999999999999998742 2678
Q ss_pred cCCccccc
Q 004209 644 MSGGVLCH 651 (768)
Q Consensus 644 ~rG~VL~~ 651 (768)
+.||+|-.
T Consensus 541 ~~~d~~~~ 548 (594)
T 1g7s_A 541 HEGDTLYV 548 (594)
T ss_dssp CTTCEEEE
T ss_pred CCCCEEEE
Confidence 89998854
No 264
>3gj7_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.93A {Rattus norvegicus} PDB: 2k0c_A 3ch5_B* 3gj6_B*
Probab=95.52 E-value=0.0044 Score=55.03 Aligned_cols=29 Identities=21% Similarity=0.582 Sum_probs=25.8
Q ss_pred CCCceeecccccCCCCCcccccccCCCCC
Q 004209 47 KPRVWSCAICTYDNEEGMSVCDICGVLRT 75 (768)
Q Consensus 47 ~~~~w~c~~c~~~n~~~~~~c~~c~~~r~ 75 (768)
.+|.|.|+.|++.|......|.+|+++|.
T Consensus 69 ~~g~W~C~~C~~~N~~~~~~C~aC~tpkP 97 (98)
T 3gj7_B 69 AIGTWDCDTCLVQNKPEAVKCVACETPKP 97 (98)
T ss_dssp --CCEECTTTCCEECTTCSBCTTTCCBCC
T ss_pred CCCcccCCcCcCCChhhcceecccCCCCC
Confidence 46889999999999999999999999984
No 265
>2ebv_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.90 E-value=0.013 Score=46.71 Aligned_cols=29 Identities=21% Similarity=0.566 Sum_probs=27.1
Q ss_pred CCCceeecccccCCCCCcccccccCCCCC
Q 004209 47 KPRVWSCAICTYDNEEGMSVCDICGVLRT 75 (768)
Q Consensus 47 ~~~~w~c~~c~~~n~~~~~~c~~c~~~r~ 75 (768)
..|.|.|..|...|......|..|++++.
T Consensus 28 ~~GsWeC~~C~V~N~a~~~kC~ACetpKP 56 (57)
T 2ebv_A 28 PIGSWECSVCCVSNNAEDNKCVSCMSEKP 56 (57)
T ss_dssp CSSSCCCSSSCCCCCSSCSBCSSSCCBCC
T ss_pred CCCeeeCCeeEccCccCCceeeEcCCcCC
Confidence 67899999999999999999999999874
No 266
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.53 E-value=0.049 Score=53.41 Aligned_cols=27 Identities=22% Similarity=0.297 Sum_probs=23.0
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCc
Q 004209 340 QLNLAIVGHVDSGKSTLSGRLLFLLGR 366 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~~~~ 366 (768)
...|+|+|.+|||||||+..|....+.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~ 44 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGY 44 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 357999999999999999999876543
No 267
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=94.41 E-value=0.014 Score=40.94 Aligned_cols=28 Identities=25% Similarity=0.490 Sum_probs=26.3
Q ss_pred CCceeecccccCCCCCcccccccCCCCC
Q 004209 48 PRVWSCAICTYDNEEGMSVCDICGVLRT 75 (768)
Q Consensus 48 ~~~w~c~~c~~~n~~~~~~c~~c~~~r~ 75 (768)
+|-|.|..|.+.|...-..|-.||++|.
T Consensus 3 ~gDW~C~~C~~~Nfa~r~~C~~C~~pr~ 30 (32)
T 2lk0_A 3 FEDWLCNKCCLNNFRKRLKCFRCGADKF 30 (32)
T ss_dssp CSEEECTTTCCEEETTCCBCTTTCCBTT
T ss_pred CCCCCcCcCcCCcChhcceecCCCCcCC
Confidence 5779999999999999999999999985
No 268
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=94.39 E-value=0.077 Score=55.72 Aligned_cols=67 Identities=16% Similarity=0.124 Sum_probs=42.4
Q ss_pred CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHc----CCCeEEEEEecccc
Q 004209 416 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF----GVDQLIVAVNKMDA 491 (768)
Q Consensus 416 ~~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~l----gip~iIVVvNKmDl 491 (768)
..+.++|||||+..... .+...+..+|.+|+|+.+.... ...+...+..+..+ +++.+-||+|+.+.
T Consensus 155 ~~yD~ViiD~p~~~~~~-~~~~~l~~aD~viiv~~~~~~s--------~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~ 225 (307)
T 3end_A 155 DDTDVVIFDVLGDVVCG-GFAAPLQHADQAVVVTANDFDS--------IYAMNRIIAAVQAKSKNYKVRLAGCVANRSRA 225 (307)
T ss_dssp SSCSEEEEEECCSSCCG-GGGGGGGTCSEEEEEECSSHHH--------HHHHHHHHHHHHTTTTTCCCEEEEEEEESCSC
T ss_pred ccCCEEEEeCCCccchH-HHHHHHHHCCEEEEEecCcHHH--------HHHHHHHHHHHHHhhhcCCCceEEEEEecCCc
Confidence 45789999998854321 1234567899999999876421 12344445555543 44433489999984
No 269
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=94.37 E-value=0.0069 Score=64.72 Aligned_cols=23 Identities=22% Similarity=0.198 Sum_probs=20.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 004209 341 LNLAIVGHVDSGKSTLSGRLLFL 363 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~ 363 (768)
..++|+|++|+|||||+|.|++.
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC-
T ss_pred CEEEEECCCCCCHHHHHHHhccc
Confidence 47999999999999999999853
No 270
>3gj7_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.93A {Rattus norvegicus} PDB: 2k0c_A 3ch5_B* 3gj6_B*
Probab=94.09 E-value=0.009 Score=53.04 Aligned_cols=30 Identities=23% Similarity=0.627 Sum_probs=0.0
Q ss_pred CCCceeecccccCCCCCcccccccCCCCCc
Q 004209 47 KPRVWSCAICTYDNEEGMSVCDICGVLRTP 76 (768)
Q Consensus 47 ~~~~w~c~~c~~~n~~~~~~c~~c~~~r~~ 76 (768)
....|.|+.|+|.|..+...|.+|+.+|..
T Consensus 6 ~~~~W~C~~C~~~N~~~~~kC~aC~~pr~~ 35 (98)
T 3gj7_B 6 AGSSWQCDTCLLQNKVTDNKCIACQAAKLP 35 (98)
T ss_dssp ------------------------------
T ss_pred CCCcccCCccccCChhhcccccccCCCCCC
Confidence 345699999999999999999999999954
No 271
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=93.63 E-value=0.045 Score=38.70 Aligned_cols=29 Identities=24% Similarity=0.634 Sum_probs=26.7
Q ss_pred CCCceeecccccCCCCCcccccccCCCCC
Q 004209 47 KPRVWSCAICTYDNEEGMSVCDICGVLRT 75 (768)
Q Consensus 47 ~~~~w~c~~c~~~n~~~~~~c~~c~~~r~ 75 (768)
.+|-|.|..|-+-|...-..|-+|+.+|.
T Consensus 3 ~~gDW~C~~C~~~Nfa~R~~C~~C~~pk~ 31 (33)
T 2k1p_A 3 SANDWQCKTCSNVNWARRSECNMCNTPKY 31 (33)
T ss_dssp SSSSCBCSSSCCBCCTTCSBCSSSCCBTT
T ss_pred CCCCcccCCCCCccccccccccccCCcCC
Confidence 45779999999999999999999999985
No 272
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=93.49 E-value=0.04 Score=53.79 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=21.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhh
Q 004209 342 NLAIVGHVDSGKSTLSGRLLFLL 364 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~~~ 364 (768)
+++|+|+.|+|||||++.|++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999754
No 273
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.18 E-value=0.039 Score=54.47 Aligned_cols=24 Identities=29% Similarity=0.321 Sum_probs=21.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhh
Q 004209 341 LNLAIVGHVDSGKSTLSGRLLFLL 364 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~ 364 (768)
..++|+|+.|||||||++.|++..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 468999999999999999998653
No 274
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.16 E-value=0.053 Score=52.47 Aligned_cols=24 Identities=17% Similarity=0.314 Sum_probs=21.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhh
Q 004209 341 LNLAIVGHVDSGKSTLSGRLLFLL 364 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~ 364 (768)
..|+|+|++|||||||++.|+...
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 468999999999999999998653
No 275
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=93.11 E-value=0.054 Score=60.91 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=22.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHh
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFL 363 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~ 363 (768)
...+|+++|.+|+||||+..+|...
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~ 62 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRY 62 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999854
No 276
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=92.62 E-value=0.066 Score=53.02 Aligned_cols=26 Identities=42% Similarity=0.406 Sum_probs=22.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhh
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFLL 364 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~ 364 (768)
+...|+|+|+.|||||||++.|.+..
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999998754
No 277
>3gj8_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.82A {Rattus norvegicus} PDB: 3gj4_B*
Probab=92.61 E-value=0.042 Score=48.16 Aligned_cols=29 Identities=21% Similarity=0.666 Sum_probs=25.8
Q ss_pred CCCceeecccccCCCCCcccccccCCCCC
Q 004209 47 KPRVWSCAICTYDNEEGMSVCDICGVLRT 75 (768)
Q Consensus 47 ~~~~w~c~~c~~~n~~~~~~c~~c~~~r~ 75 (768)
.+|.|.|+.|++.|......|..|++++.
T Consensus 62 ~~g~W~C~~C~~~N~a~~~~C~~C~~pkp 90 (92)
T 3gj8_B 62 PEGSWDCEVCLVQNKADSTKCIACESAKP 90 (92)
T ss_dssp --CCEECTTTCCEECSSCSBCTTTCCBCC
T ss_pred CCCcccCCcCCcCChhhcccccccCCCCC
Confidence 56899999999999999999999999884
No 278
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=92.59 E-value=0.072 Score=51.96 Aligned_cols=24 Identities=25% Similarity=0.242 Sum_probs=21.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhh
Q 004209 341 LNLAIVGHVDSGKSTLSGRLLFLL 364 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~ 364 (768)
-.|+|+|+.|||||||++.|.+..
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 469999999999999999998753
No 279
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=92.59 E-value=0.07 Score=53.21 Aligned_cols=27 Identities=22% Similarity=0.325 Sum_probs=23.1
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhh
Q 004209 338 MTQLNLAIVGHVDSGKSTLSGRLLFLL 364 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~~ 364 (768)
+....|+|+|+.|+|||||+++|+...
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 345679999999999999999999654
No 280
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=92.39 E-value=0.069 Score=52.81 Aligned_cols=24 Identities=25% Similarity=0.184 Sum_probs=21.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhh
Q 004209 341 LNLAIVGHVDSGKSTLSGRLLFLL 364 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~ 364 (768)
-.++|+|+.|||||||++.|.+..
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 368999999999999999999754
No 281
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=92.38 E-value=0.063 Score=52.17 Aligned_cols=23 Identities=35% Similarity=0.436 Sum_probs=20.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhh
Q 004209 342 NLAIVGHVDSGKSTLSGRLLFLL 364 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~~~ 364 (768)
.|+|+|+.|||||||++.|++..
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 48999999999999999999653
No 282
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=92.36 E-value=0.087 Score=51.84 Aligned_cols=26 Identities=38% Similarity=0.517 Sum_probs=22.6
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhC
Q 004209 340 QLNLAIVGHVDSGKSTLSGRLLFLLG 365 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~~~ 365 (768)
...|+|+|+.|||||||++.|.+..+
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999987643
No 283
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=92.33 E-value=0.11 Score=49.58 Aligned_cols=27 Identities=22% Similarity=0.299 Sum_probs=22.9
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCc
Q 004209 340 QLNLAIVGHVDSGKSTLSGRLLFLLGR 366 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~~~~ 366 (768)
...|+|+|.+|||||||+..|....+.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g~ 34 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLHA 34 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhCc
Confidence 357999999999999999999875543
No 284
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=92.30 E-value=0.088 Score=50.77 Aligned_cols=23 Identities=43% Similarity=0.473 Sum_probs=20.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 004209 341 LNLAIVGHVDSGKSTLSGRLLFL 363 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~ 363 (768)
..|+|+|.+|||||||++.|.+.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 46999999999999999999864
No 285
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=92.25 E-value=0.21 Score=49.76 Aligned_cols=67 Identities=15% Similarity=0.290 Sum_probs=48.6
Q ss_pred CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEeccccc
Q 004209 416 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV 492 (768)
Q Consensus 416 ~~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv 492 (768)
..+.++|||+|+... ..+...+..+|.+|+|+.+.... ...+...+..+...+.+.+.+|+|+++..
T Consensus 110 ~~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~--------~~~~~~~~~~l~~~~~~~~~vv~N~~~~~ 176 (237)
T 1g3q_A 110 DKFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPEISC--------LTDTMKVGIVLKKAGLAILGFVLNRYGRS 176 (237)
T ss_dssp GGCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSCHHH--------HHHHHHHHHHHHHTTCEEEEEEEEEETSC
T ss_pred hcCCEEEEECCCCcC--HHHHHHHHHCCeEEEEecCCccc--------HHHHHHHHHHHHhCCCceEEEEEecCCcc
Confidence 347899999998654 34455677899999999876431 23455566667777877678899999864
No 286
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=92.22 E-value=0.14 Score=51.23 Aligned_cols=66 Identities=20% Similarity=0.231 Sum_probs=48.4
Q ss_pred CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccc
Q 004209 416 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDA 491 (768)
Q Consensus 416 ~~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDl 491 (768)
..+.++|||||+.... .+...+..+|.+|+|+.++... ...+...+.++..++++.+.+|+||.+.
T Consensus 130 ~~yD~viiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s--------~~~~~~~~~~~~~~~~~~~~~v~N~~~~ 195 (254)
T 3kjh_A 130 DKKEAVVMDMGAGIEH--LTRGTAKAVDMMIAVIEPNLNS--------IKTGLNIEKLAGDLGIKKVRYVINKVRN 195 (254)
T ss_dssp TCCSEEEEEECTTCTT--CCHHHHTTCSEEEEEECSSHHH--------HHHHHHHHHHHHHHTCSCEEEEEEEECC
T ss_pred CCCCEEEEeCCCcccH--HHHHHHHHCCEEEEecCCCHHH--------HHHHHHHHHHHHHcCCccEEEEEeCCCC
Confidence 5688999999985443 3344567899999999986431 1344555667778888878899999983
No 287
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=92.14 E-value=0.078 Score=50.27 Aligned_cols=26 Identities=35% Similarity=0.464 Sum_probs=22.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCc
Q 004209 341 LNLAIVGHVDSGKSTLSGRLLFLLGR 366 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~ 366 (768)
..|+|+|.+|||||||+..|....+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 46999999999999999999876553
No 288
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=92.12 E-value=0.093 Score=51.52 Aligned_cols=27 Identities=22% Similarity=0.288 Sum_probs=23.3
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCc
Q 004209 340 QLNLAIVGHVDSGKSTLSGRLLFLLGR 366 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~~~~ 366 (768)
...|+|+|..|||||||++.|.+..+.
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~g~ 55 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADETGL 55 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 357999999999999999999876554
No 289
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=92.06 E-value=0.074 Score=53.35 Aligned_cols=24 Identities=38% Similarity=0.437 Sum_probs=21.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhh
Q 004209 341 LNLAIVGHVDSGKSTLSGRLLFLL 364 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~ 364 (768)
-.++|+|+.|||||||++.|++..
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 358999999999999999999753
No 290
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=91.97 E-value=0.31 Score=49.90 Aligned_cols=68 Identities=9% Similarity=0.063 Sum_probs=46.4
Q ss_pred CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccc
Q 004209 416 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDA 491 (768)
Q Consensus 416 ~~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDl 491 (768)
..+.++|||||+...........+..+|.+|+|+...... ...+...+..+...+++.+-+|+|+.|.
T Consensus 127 ~~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~~~s--------~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 194 (262)
T 2ph1_A 127 GELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQELT--------AVIVEKAINMAEETNTSVLGLVENMSYF 194 (262)
T ss_dssp CSCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSSSCC--------HHHHHHHHHHHHTTTCCEEEEEETTCCE
T ss_pred cCCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCccch--------HHHHHHHHHHHHhCCCCEEEEEECCCcc
Confidence 5688999999986543222222233689999999877542 2345566667777888844489999984
No 291
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=91.84 E-value=0.1 Score=50.88 Aligned_cols=25 Identities=24% Similarity=0.279 Sum_probs=21.8
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhh
Q 004209 340 QLNLAIVGHVDSGKSTLSGRLLFLL 364 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~~ 364 (768)
...|+|+|++|||||||++.|....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3479999999999999999998654
No 292
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=91.75 E-value=0.11 Score=50.00 Aligned_cols=27 Identities=26% Similarity=0.400 Sum_probs=22.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhC
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFLLG 365 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~ 365 (768)
.+..|+|+|.+||||||+...|....+
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356899999999999999999987655
No 293
>3gj8_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.82A {Rattus norvegicus} PDB: 3gj4_B*
Probab=91.65 E-value=0.033 Score=48.81 Aligned_cols=29 Identities=24% Similarity=0.597 Sum_probs=0.0
Q ss_pred CCceeecccccCCCCCcccccccCCCCCc
Q 004209 48 PRVWSCAICTYDNEEGMSVCDICGVLRTP 76 (768)
Q Consensus 48 ~~~w~c~~c~~~n~~~~~~c~~c~~~r~~ 76 (768)
+|.|.|..|++.|..+...|.+|+++|..
T Consensus 6 ~g~W~C~~C~~~N~~~~~~C~~C~~pkp~ 34 (92)
T 3gj8_B 6 VGSWECPVCCVSNKAEDSRCVSCTSEKPG 34 (92)
T ss_dssp -----------------------------
T ss_pred CcCCCCCcCCCEeccccceecccCCCCCC
Confidence 57899999999999999999999999953
No 294
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=91.56 E-value=0.27 Score=50.03 Aligned_cols=67 Identities=16% Similarity=0.311 Sum_probs=48.0
Q ss_pred CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEeccccc
Q 004209 416 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV 492 (768)
Q Consensus 416 ~~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv 492 (768)
..+.++|||+|+... ..+...+..+|.+|+|+.+.... ...+...+..+...+.+.+.+|+|++|..
T Consensus 109 ~~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~--------~~~~~~~~~~l~~~~~~~~~vv~N~~~~~ 175 (263)
T 1hyq_A 109 ESTDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPEISS--------ITDGLKTKIVAERLGTKVLGVVVNRITTL 175 (263)
T ss_dssp HTCSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSSHHH--------HHHHHHHHHHHHHHTCEEEEEEEEEECTT
T ss_pred hhCCEEEEeCCCCCC--hHHHHHHHHCCEEEEEeCCChhH--------HHHHHHHHHHHHhcCCCeeEEEEccCCcc
Confidence 357899999998554 34455667899999999876431 23455566666666877677999999864
No 295
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=91.56 E-value=0.076 Score=51.05 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=19.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHH
Q 004209 341 LNLAIVGHVDSGKSTLSGRLLF 362 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~ 362 (768)
-.++++|+.|||||||++.+..
T Consensus 10 ei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHcc
Confidence 3689999999999999998653
No 296
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=91.48 E-value=0.11 Score=51.42 Aligned_cols=25 Identities=20% Similarity=0.207 Sum_probs=22.0
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhh
Q 004209 340 QLNLAIVGHVDSGKSTLSGRLLFLL 364 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~~ 364 (768)
...|+|+|++|||||||++.|+...
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4568999999999999999999654
No 297
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=91.43 E-value=0.11 Score=48.76 Aligned_cols=24 Identities=25% Similarity=0.098 Sum_probs=21.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhC
Q 004209 342 NLAIVGHVDSGKSTLSGRLLFLLG 365 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~~~~ 365 (768)
.|+|+|.+||||||+...|....+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999986644
No 298
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=91.39 E-value=0.12 Score=52.41 Aligned_cols=27 Identities=33% Similarity=0.422 Sum_probs=23.1
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCc
Q 004209 340 QLNLAIVGHVDSGKSTLSGRLLFLLGR 366 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~~~~ 366 (768)
...|+|+|..|||||||++.|....+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~ 53 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGL 53 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 458999999999999999999955544
No 299
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=91.32 E-value=0.13 Score=51.14 Aligned_cols=25 Identities=28% Similarity=0.272 Sum_probs=22.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhC
Q 004209 341 LNLAIVGHVDSGKSTLSGRLLFLLG 365 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~ 365 (768)
.+|+|+|.+||||||+++.|....+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999987654
No 300
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=91.29 E-value=0.13 Score=48.88 Aligned_cols=25 Identities=24% Similarity=0.232 Sum_probs=21.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhC
Q 004209 341 LNLAIVGHVDSGKSTLSGRLLFLLG 365 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~ 365 (768)
..|+++|.+||||||+..+|...++
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4689999999999999999986543
No 301
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=91.29 E-value=0.15 Score=48.94 Aligned_cols=27 Identities=33% Similarity=0.348 Sum_probs=23.0
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCc
Q 004209 340 QLNLAIVGHVDSGKSTLSGRLLFLLGR 366 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~~~~ 366 (768)
...|+|+|.+||||||+...|...++.
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~~ 31 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLRL 31 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 467999999999999999999865543
No 302
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=91.26 E-value=0.11 Score=49.62 Aligned_cols=24 Identities=25% Similarity=0.428 Sum_probs=21.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhh
Q 004209 341 LNLAIVGHVDSGKSTLSGRLLFLL 364 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~ 364 (768)
-.++++|+.|||||||++.|.+..
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 469999999999999999999653
No 303
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=91.21 E-value=0.11 Score=49.77 Aligned_cols=26 Identities=19% Similarity=0.105 Sum_probs=22.6
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhC
Q 004209 340 QLNLAIVGHVDSGKSTLSGRLLFLLG 365 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~~~ 365 (768)
...|+|.|.+||||||+...|...++
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35799999999999999999987554
No 304
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=91.15 E-value=0.12 Score=52.07 Aligned_cols=25 Identities=24% Similarity=0.155 Sum_probs=22.0
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhh
Q 004209 340 QLNLAIVGHVDSGKSTLSGRLLFLL 364 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~~ 364 (768)
.-.++|+|+.|||||||++.|++..
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHhccC
Confidence 3478999999999999999999754
No 305
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=91.12 E-value=0.14 Score=49.88 Aligned_cols=28 Identities=25% Similarity=0.147 Sum_probs=23.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCc
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGR 366 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~ 366 (768)
+...|+|.|.+||||||+...|....+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 4568999999999999999999876543
No 306
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=91.12 E-value=0.11 Score=48.57 Aligned_cols=25 Identities=32% Similarity=0.275 Sum_probs=21.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCc
Q 004209 341 LNLAIVGHVDSGKSTLSGRLLFLLGR 366 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~ 366 (768)
+.|+|+|.+||||||+...| ...+.
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~ 26 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGA 26 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTC
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCC
Confidence 46899999999999999999 55543
No 307
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=91.10 E-value=0.14 Score=51.94 Aligned_cols=27 Identities=33% Similarity=0.586 Sum_probs=23.3
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCc
Q 004209 340 QLNLAIVGHVDSGKSTLSGRLLFLLGR 366 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~~~~ 366 (768)
...|+|+|..|||||||++.|.+..+.
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~~lG~ 51 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIMELLGQ 51 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHTG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhch
Confidence 357999999999999999999876553
No 308
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=90.99 E-value=0.14 Score=49.05 Aligned_cols=26 Identities=31% Similarity=0.400 Sum_probs=22.6
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhC
Q 004209 340 QLNLAIVGHVDSGKSTLSGRLLFLLG 365 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~~~ 365 (768)
...|+++|.+||||||+...|....+
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46799999999999999999986544
No 309
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=90.86 E-value=0.14 Score=49.60 Aligned_cols=25 Identities=44% Similarity=0.607 Sum_probs=22.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCc
Q 004209 342 NLAIVGHVDSGKSTLSGRLLFLLGR 366 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~~~~~ 366 (768)
.|+|+|.+||||||++..|....+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~ 26 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGY 26 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCC
Confidence 6899999999999999999976553
No 310
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=90.83 E-value=0.11 Score=52.61 Aligned_cols=22 Identities=45% Similarity=0.449 Sum_probs=20.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 004209 342 NLAIVGHVDSGKSTLSGRLLFL 363 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~~ 363 (768)
.++|+|+.|||||||++.|.+.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999853
No 311
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=90.77 E-value=0.13 Score=49.76 Aligned_cols=22 Identities=36% Similarity=0.315 Sum_probs=20.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 004209 342 NLAIVGHVDSGKSTLSGRLLFL 363 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~~ 363 (768)
.|+++|+.|||||||++.|...
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhcc
Confidence 5899999999999999999864
No 312
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=90.73 E-value=0.12 Score=56.33 Aligned_cols=23 Identities=35% Similarity=0.307 Sum_probs=20.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 004209 341 LNLAIVGHVDSGKSTLSGRLLFL 363 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~ 363 (768)
-.++|+|+.|+|||||+|.|++.
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCC
T ss_pred CEEEEECCCCccHHHHHHHHhcc
Confidence 36999999999999999999954
No 313
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=90.67 E-value=0.14 Score=48.49 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=20.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHH
Q 004209 341 LNLAIVGHVDSGKSTLSGRLLF 362 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~ 362 (768)
..|+|+|.+||||||+...|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999986
No 314
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=90.66 E-value=0.1 Score=53.17 Aligned_cols=22 Identities=36% Similarity=0.410 Sum_probs=20.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 004209 342 NLAIVGHVDSGKSTLSGRLLFL 363 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~~ 363 (768)
.++|+|+.|||||||++.|.+.
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 6999999999999999999854
No 315
>2j9u_B VPS36, vacuolar protein sorting-associated protein 36; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1
Probab=90.54 E-value=0.067 Score=44.61 Aligned_cols=27 Identities=37% Similarity=0.812 Sum_probs=22.3
Q ss_pred ceeecccccCCCCCcc---------cccccCCCCCc
Q 004209 50 VWSCAICTYDNEEGMS---------VCDICGVLRTP 76 (768)
Q Consensus 50 ~w~c~~c~~~n~~~~~---------~c~~c~~~r~~ 76 (768)
-|.|.+|.|-|..... .|..||+.+..
T Consensus 17 tWVCpICsfsN~v~s~fdp~~~~lPpC~aCGIkP~~ 52 (76)
T 2j9u_B 17 TWVCPICMVSNETQGEFTKDTLPTPICINCGVPADY 52 (76)
T ss_dssp EEECTTTCCEEEESSCCCTTCSSCCBCTTTCCBCCH
T ss_pred ceECccccccCcCccccCCCCCCCCcccccCccCCH
Confidence 5999999998876655 59999998864
No 316
>1n0z_A ZNF265; zinc finger, RNA splicing, transcription; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=90.51 E-value=0.2 Score=37.89 Aligned_cols=29 Identities=31% Similarity=0.618 Sum_probs=27.1
Q ss_pred CCCceeec--ccccCCCCCcccccccCCCCC
Q 004209 47 KPRVWSCA--ICTYDNEEGMSVCDICGVLRT 75 (768)
Q Consensus 47 ~~~~w~c~--~c~~~n~~~~~~c~~c~~~r~ 75 (768)
.+|-|.|. .|.+-|...-..|-.|+++|.
T Consensus 11 ~~GDW~C~~~~C~~~Nfa~R~~C~~C~~pr~ 41 (45)
T 1n0z_A 11 SDGDWICPDKKCGNVNFARRTSCDRCGREKT 41 (45)
T ss_dssp CSSSCBCSSTTTCCBCCSSCSBCSSSCCBCC
T ss_pred CCCCcCCCCCCCCCEEccccccccccCCcCC
Confidence 67789999 899999999999999999995
No 317
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=90.41 E-value=0.19 Score=48.38 Aligned_cols=28 Identities=25% Similarity=0.297 Sum_probs=23.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCc
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGR 366 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~ 366 (768)
+...|+|+|.+||||||+...|....+.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~ 35 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGY 35 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3468999999999999999999866543
No 318
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=90.38 E-value=0.13 Score=50.65 Aligned_cols=25 Identities=28% Similarity=0.327 Sum_probs=21.8
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhh
Q 004209 340 QLNLAIVGHVDSGKSTLSGRLLFLL 364 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~~ 364 (768)
...|+|+|.+|||||||+++|....
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3568999999999999999998654
No 319
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=90.35 E-value=0.16 Score=49.52 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=21.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhC
Q 004209 341 LNLAIVGHVDSGKSTLSGRLLFLLG 365 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~ 365 (768)
.+|+|+|..||||||+.+.|.. .+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~-~g 25 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE-LG 25 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH-TT
T ss_pred eEEEEECCCCcCHHHHHHHHHH-CC
Confidence 3799999999999999999987 54
No 320
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=90.33 E-value=0.17 Score=48.51 Aligned_cols=27 Identities=26% Similarity=0.465 Sum_probs=23.1
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCc
Q 004209 340 QLNLAIVGHVDSGKSTLSGRLLFLLGR 366 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~~~~ 366 (768)
..+|+++|.+|+||||+...|...++.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~ 31 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKR 31 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 357999999999999999999876543
No 321
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=90.29 E-value=0.13 Score=52.57 Aligned_cols=22 Identities=18% Similarity=0.253 Sum_probs=20.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 004209 342 NLAIVGHVDSGKSTLSGRLLFL 363 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~~ 363 (768)
.++|+|+.|||||||++.|.+.
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999854
No 322
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=90.28 E-value=0.14 Score=54.42 Aligned_cols=24 Identities=38% Similarity=0.577 Sum_probs=21.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhh
Q 004209 341 LNLAIVGHVDSGKSTLSGRLLFLL 364 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~ 364 (768)
-.++|+|+.|+|||||++.|++..
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhhhc
Confidence 479999999999999999999653
No 323
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=90.21 E-value=0.18 Score=49.77 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=21.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCc
Q 004209 342 NLAIVGHVDSGKSTLSGRLLFLLGR 366 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~~~~~ 366 (768)
+|+|+|.+||||||+...|....+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~ 26 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEI 26 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 6999999999999999999766544
No 324
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=90.19 E-value=0.14 Score=54.10 Aligned_cols=21 Identities=29% Similarity=0.404 Sum_probs=19.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHH
Q 004209 341 LNLAIVGHVDSGKSTLSGRLL 361 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll 361 (768)
..++++|+.|+|||||+|.|+
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999999998
No 325
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=90.16 E-value=0.18 Score=49.30 Aligned_cols=26 Identities=23% Similarity=0.347 Sum_probs=22.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCc
Q 004209 341 LNLAIVGHVDSGKSTLSGRLLFLLGR 366 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~ 366 (768)
..|+|+|.+|||||||...|...++.
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~~l~~ 51 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFARKLNV 51 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 57999999999999999999876543
No 326
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=90.12 E-value=0.13 Score=51.48 Aligned_cols=21 Identities=24% Similarity=0.146 Sum_probs=19.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHH
Q 004209 342 NLAIVGHVDSGKSTLSGRLLF 362 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~ 362 (768)
.++|+|+.|||||||++.|++
T Consensus 24 ~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999985
No 327
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=90.11 E-value=0.16 Score=52.68 Aligned_cols=23 Identities=26% Similarity=0.261 Sum_probs=20.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 004209 341 LNLAIVGHVDSGKSTLSGRLLFL 363 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~ 363 (768)
-.|+|+|+.|||||||++.|++.
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHHh
Confidence 47999999999999999999853
No 328
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=90.09 E-value=0.2 Score=48.59 Aligned_cols=25 Identities=32% Similarity=0.454 Sum_probs=22.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHh
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFL 363 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~ 363 (768)
....|+|+|.+||||||+...|...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 4578999999999999999999875
No 329
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=90.08 E-value=0.12 Score=52.65 Aligned_cols=22 Identities=45% Similarity=0.588 Sum_probs=20.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHH
Q 004209 341 LNLAIVGHVDSGKSTLSGRLLF 362 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~ 362 (768)
-.++|+|+.|||||||++.|++
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~G 53 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLA 53 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3699999999999999999984
No 330
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=90.04 E-value=0.14 Score=50.54 Aligned_cols=22 Identities=23% Similarity=0.277 Sum_probs=20.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 004209 342 NLAIVGHVDSGKSTLSGRLLFL 363 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~~ 363 (768)
.|+|+|+.|+|||||++.|++.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 4899999999999999999864
No 331
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=90.03 E-value=0.18 Score=53.72 Aligned_cols=26 Identities=35% Similarity=0.429 Sum_probs=22.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhh
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFLL 364 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~ 364 (768)
....|+|+|+.|||||||++.|.+..
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhc
Confidence 45689999999999999999998753
No 332
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=89.98 E-value=0.13 Score=52.24 Aligned_cols=21 Identities=29% Similarity=0.384 Sum_probs=19.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHH
Q 004209 342 NLAIVGHVDSGKSTLSGRLLF 362 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~ 362 (768)
.++|+|+.|||||||++.|++
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~G 56 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMG 56 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999985
No 333
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=89.97 E-value=0.18 Score=48.23 Aligned_cols=25 Identities=24% Similarity=0.199 Sum_probs=21.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhC
Q 004209 341 LNLAIVGHVDSGKSTLSGRLLFLLG 365 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~ 365 (768)
..|+|+|.+|+||||++..|...++
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3689999999999999999987654
No 334
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=89.91 E-value=0.21 Score=48.99 Aligned_cols=25 Identities=36% Similarity=0.345 Sum_probs=21.8
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhh
Q 004209 340 QLNLAIVGHVDSGKSTLSGRLLFLL 364 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~~ 364 (768)
...|+|+|..|+|||||+..|...+
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4679999999999999999998643
No 335
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=89.85 E-value=0.13 Score=52.58 Aligned_cols=23 Identities=30% Similarity=0.278 Sum_probs=20.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 004209 341 LNLAIVGHVDSGKSTLSGRLLFL 363 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~ 363 (768)
-.++|+|+.|||||||++.|.+.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 36999999999999999999854
No 336
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=89.84 E-value=0.2 Score=49.50 Aligned_cols=25 Identities=32% Similarity=0.462 Sum_probs=21.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCc
Q 004209 342 NLAIVGHVDSGKSTLSGRLLFLLGR 366 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~~~~~ 366 (768)
+|+|+|.+||||||+...|....+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~ 26 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGI 26 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 6999999999999999999876543
No 337
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=89.79 E-value=0.13 Score=53.02 Aligned_cols=22 Identities=36% Similarity=0.326 Sum_probs=20.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 004209 342 NLAIVGHVDSGKSTLSGRLLFL 363 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~~ 363 (768)
.++|+|+.|||||||++.|++.
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999854
No 338
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=89.79 E-value=0.16 Score=52.27 Aligned_cols=21 Identities=38% Similarity=0.322 Sum_probs=19.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHH
Q 004209 342 NLAIVGHVDSGKSTLSGRLLF 362 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~ 362 (768)
.++|+|+.|||||||++.|++
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999996
No 339
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=89.78 E-value=0.2 Score=51.01 Aligned_cols=27 Identities=30% Similarity=0.573 Sum_probs=23.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhC
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFLLG 365 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~ 365 (768)
..+.|+|.|.+||||||+...|...++
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 457899999999999999999987655
No 340
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=89.76 E-value=0.2 Score=49.71 Aligned_cols=28 Identities=18% Similarity=0.288 Sum_probs=23.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCc
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGR 366 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~ 366 (768)
+...|+|+|.+||||||+...|....+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~ 30 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHA 30 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCc
Confidence 3468999999999999999999876553
No 341
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=89.71 E-value=0.25 Score=47.59 Aligned_cols=26 Identities=31% Similarity=0.354 Sum_probs=22.4
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHh
Q 004209 338 MTQLNLAIVGHVDSGKSTLSGRLLFL 363 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~ 363 (768)
++...|+++|.+|+||||++..|...
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 34578999999999999999999854
No 342
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=89.71 E-value=0.21 Score=48.91 Aligned_cols=26 Identities=35% Similarity=0.224 Sum_probs=22.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhh
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFLL 364 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~ 364 (768)
....|+|.|.+||||||+.+.|...+
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999998643
No 343
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=89.70 E-value=0.19 Score=48.87 Aligned_cols=23 Identities=30% Similarity=0.304 Sum_probs=20.6
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHH
Q 004209 340 QLNLAIVGHVDSGKSTLSGRLLF 362 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~ 362 (768)
...++|+|..|+|||||+++|+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHH
Confidence 35789999999999999999984
No 344
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=89.63 E-value=0.14 Score=52.61 Aligned_cols=22 Identities=41% Similarity=0.511 Sum_probs=20.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 004209 342 NLAIVGHVDSGKSTLSGRLLFL 363 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~~ 363 (768)
.++|+|+.|||||||++.|++.
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999999864
No 345
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=89.61 E-value=0.11 Score=50.50 Aligned_cols=22 Identities=55% Similarity=0.717 Sum_probs=20.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHH
Q 004209 341 LNLAIVGHVDSGKSTLSGRLLF 362 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~ 362 (768)
..|+|+|..|+|||||+..|++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999985
No 346
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=89.60 E-value=0.24 Score=50.48 Aligned_cols=28 Identities=25% Similarity=0.064 Sum_probs=24.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCc
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGR 366 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~ 366 (768)
++.+|+|+|.+||||||+..+|....+.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~ 55 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCY 55 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4578999999999999999999865543
No 347
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=89.59 E-value=0.21 Score=48.55 Aligned_cols=25 Identities=20% Similarity=0.173 Sum_probs=22.4
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhh
Q 004209 340 QLNLAIVGHVDSGKSTLSGRLLFLL 364 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~~ 364 (768)
...|+|+|.+||||||++..|....
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4679999999999999999998765
No 348
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=89.58 E-value=0.14 Score=53.36 Aligned_cols=22 Identities=41% Similarity=0.369 Sum_probs=20.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 004209 342 NLAIVGHVDSGKSTLSGRLLFL 363 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~~ 363 (768)
.++|+|+.|||||||++.|.+.
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 6899999999999999999853
No 349
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=89.56 E-value=0.23 Score=48.79 Aligned_cols=25 Identities=36% Similarity=0.452 Sum_probs=22.1
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhh
Q 004209 340 QLNLAIVGHVDSGKSTLSGRLLFLL 364 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~~ 364 (768)
...|+|+|.+|+|||||++.|....
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4679999999999999999998753
No 350
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=89.52 E-value=0.14 Score=53.02 Aligned_cols=22 Identities=41% Similarity=0.584 Sum_probs=20.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 004209 342 NLAIVGHVDSGKSTLSGRLLFL 363 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~~ 363 (768)
.++|+|+.|||||||++.|.+.
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999853
No 351
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=89.52 E-value=0.25 Score=48.23 Aligned_cols=28 Identities=25% Similarity=0.375 Sum_probs=23.7
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhC
Q 004209 338 MTQLNLAIVGHVDSGKSTLSGRLLFLLG 365 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~~~ 365 (768)
.....|+|+|.+|+||||+...|....+
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3456899999999999999999986554
No 352
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=89.50 E-value=0.19 Score=49.58 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=20.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHH
Q 004209 341 LNLAIVGHVDSGKSTLSGRLLF 362 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~ 362 (768)
-.++|+|+.|+|||||+..|++
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999985
No 353
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=89.45 E-value=0.14 Score=53.49 Aligned_cols=22 Identities=36% Similarity=0.280 Sum_probs=20.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 004209 342 NLAIVGHVDSGKSTLSGRLLFL 363 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~~ 363 (768)
.++|+|+.|||||||++.|.+.
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999853
No 354
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.45 E-value=0.15 Score=52.12 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=20.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 004209 342 NLAIVGHVDSGKSTLSGRLLFL 363 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~~ 363 (768)
.++|+|+.|||||||++.|.+.
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999854
No 355
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=89.44 E-value=0.23 Score=50.91 Aligned_cols=28 Identities=25% Similarity=0.224 Sum_probs=23.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCc
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGR 366 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~ 366 (768)
+...|+|+|+.|||||||+..|...++.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg~ 53 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLNW 53 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 3468999999999999999999965554
No 356
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=89.44 E-value=0.15 Score=52.86 Aligned_cols=23 Identities=43% Similarity=0.567 Sum_probs=20.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 004209 341 LNLAIVGHVDSGKSTLSGRLLFL 363 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~ 363 (768)
-.++|+|+.|||||||++.|++.
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 36999999999999999999864
No 357
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=89.41 E-value=0.55 Score=49.21 Aligned_cols=67 Identities=15% Similarity=0.152 Sum_probs=49.9
Q ss_pred CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEeccccc
Q 004209 417 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV 492 (768)
Q Consensus 417 ~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv 492 (768)
.+.++|||||....... ...-+..+|.+|+|+.+.... .....+.+..+...+++.+-+|+|++|.-
T Consensus 201 ~yD~VIIDtpp~~~~~d-a~~l~~~aD~vllVv~~~~~~--------~~~~~~~~~~l~~~g~~~~GvVlN~v~~~ 267 (286)
T 3la6_A 201 NYDLVLIDTPPILAVTD-AAIVGRHVGTTLMVARYAVNT--------LKEVETSLSRFEQNGIPVKGVILNSIFRR 267 (286)
T ss_dssp HCSEEEEECCCTTTCTH-HHHHTTTCSEEEEEEETTTSB--------HHHHHHHHHHHHHTTCCCCEEEEEEECCC
T ss_pred CCCEEEEcCCCCcchHH-HHHHHHHCCeEEEEEeCCCCc--------HHHHHHHHHHHHhCCCCEEEEEEcCcccc
Confidence 36799999999654322 233456799999999987642 35667777888888888778999999864
No 358
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=89.40 E-value=0.2 Score=49.04 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=21.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCc
Q 004209 341 LNLAIVGHVDSGKSTLSGRLLFLLGR 366 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~ 366 (768)
..|+|+|..||||||+.+.|.. .+.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-lg~ 27 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-LGV 27 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-TTC
T ss_pred cEEEEECCCCCCHHHHHHHHHH-CCC
Confidence 5799999999999999999986 443
No 359
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=89.33 E-value=0.18 Score=52.49 Aligned_cols=22 Identities=50% Similarity=0.394 Sum_probs=20.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 004209 342 NLAIVGHVDSGKSTLSGRLLFL 363 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~~ 363 (768)
.++|+|+.|||||||++.|++.
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999963
No 360
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=89.31 E-value=0.82 Score=49.60 Aligned_cols=22 Identities=32% Similarity=0.363 Sum_probs=19.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHH
Q 004209 341 LNLAIVGHVDSGKSTLSGRLLF 362 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~ 362 (768)
-.+.|+|++|+|||||+.+|+.
T Consensus 62 ~i~~I~GppGsGKSTLal~la~ 83 (356)
T 3hr8_A 62 RIVEIFGQESSGKTTLALHAIA 83 (356)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999984
No 361
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=89.31 E-value=0.23 Score=48.52 Aligned_cols=26 Identities=31% Similarity=0.289 Sum_probs=22.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhh
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFLL 364 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~ 364 (768)
+...|+|.|.+||||||+...|...+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999998653
No 362
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=89.30 E-value=0.14 Score=51.48 Aligned_cols=22 Identities=23% Similarity=0.196 Sum_probs=20.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 004209 342 NLAIVGHVDSGKSTLSGRLLFL 363 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~~ 363 (768)
.++|+|+.|||||||++.|++.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999854
No 363
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=89.26 E-value=0.23 Score=47.46 Aligned_cols=28 Identities=29% Similarity=0.291 Sum_probs=23.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCc
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGR 366 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~ 366 (768)
....|+|+|.+|+||||+...|....+.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~ 37 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSGL 37 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhCC
Confidence 3457999999999999999999865543
No 364
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=89.23 E-value=0.18 Score=50.50 Aligned_cols=21 Identities=19% Similarity=0.526 Sum_probs=19.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHH
Q 004209 341 LNLAIVGHVDSGKSTLSGRLL 361 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll 361 (768)
-.++|+|+.|||||||+..|+
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHH
Confidence 368999999999999999988
No 365
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=89.17 E-value=0.17 Score=48.24 Aligned_cols=26 Identities=23% Similarity=0.110 Sum_probs=18.5
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhC
Q 004209 340 QLNLAIVGHVDSGKSTLSGRLLFLLG 365 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~~~ 365 (768)
...|+|.|.+||||||+...|...++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45799999999999999999986544
No 366
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=89.16 E-value=0.28 Score=47.36 Aligned_cols=24 Identities=21% Similarity=0.390 Sum_probs=21.8
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Q 004209 340 QLNLAIVGHVDSGKSTLSGRLLFL 363 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~ 363 (768)
..+|+++|.+|+||||+...|...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999876
No 367
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=89.16 E-value=0.19 Score=49.57 Aligned_cols=21 Identities=38% Similarity=0.491 Sum_probs=19.5
Q ss_pred EEEEeCCCCCHHHHHHHHHHh
Q 004209 343 LAIVGHVDSGKSTLSGRLLFL 363 (768)
Q Consensus 343 VaIvG~vdaGKSTLi~~Ll~~ 363 (768)
|+|+|+.|+|||||+++|+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999865
No 368
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=89.16 E-value=0.16 Score=52.84 Aligned_cols=23 Identities=35% Similarity=0.408 Sum_probs=20.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 004209 341 LNLAIVGHVDSGKSTLSGRLLFL 363 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~ 363 (768)
-.++|+|+.|||||||++.|.+.
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEcCCCCcHHHHHHHHHcC
Confidence 36899999999999999999853
No 369
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=89.13 E-value=0.25 Score=49.36 Aligned_cols=27 Identities=33% Similarity=0.393 Sum_probs=23.3
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCc
Q 004209 340 QLNLAIVGHVDSGKSTLSGRLLFLLGR 366 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~~~~ 366 (768)
...|+|+|.+||||||+...|....+.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~~ 33 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFEL 33 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 367999999999999999999876553
No 370
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=89.13 E-value=1.6 Score=46.77 Aligned_cols=21 Identities=24% Similarity=0.170 Sum_probs=18.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHH
Q 004209 342 NLAIVGHVDSGKSTLSGRLLF 362 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~ 362 (768)
.+.|.|++++|||||+-+++.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~ 50 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVS 50 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999888773
No 371
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=89.04 E-value=0.32 Score=46.41 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=22.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhC
Q 004209 341 LNLAIVGHVDSGKSTLSGRLLFLLG 365 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~ 365 (768)
..|+|+|.+||||||+...|....+
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999987654
No 372
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=89.04 E-value=0.41 Score=52.92 Aligned_cols=25 Identities=28% Similarity=0.267 Sum_probs=21.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHh
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFL 363 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~ 363 (768)
....|+|+|.+|||||||..+|...
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3467899999999999999999853
No 373
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=89.03 E-value=0.14 Score=51.36 Aligned_cols=24 Identities=25% Similarity=0.338 Sum_probs=15.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHH-Hhh
Q 004209 341 LNLAIVGHVDSGKSTLSGRLL-FLL 364 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll-~~~ 364 (768)
..|+|+|+.|||||||++.|. +..
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC---
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 468999999999999999998 653
No 374
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=89.03 E-value=0.29 Score=47.64 Aligned_cols=28 Identities=18% Similarity=0.157 Sum_probs=23.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCc
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGR 366 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~ 366 (768)
....|+|+|.+||||||+...|....+.
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~g~ 41 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDYSF 41 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCc
Confidence 3467999999999999999999876553
No 375
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.03 E-value=0.16 Score=52.48 Aligned_cols=22 Identities=23% Similarity=0.298 Sum_probs=20.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 004209 342 NLAIVGHVDSGKSTLSGRLLFL 363 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~~ 363 (768)
.++|+|+.|||||||++.|++.
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999853
No 376
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=89.01 E-value=0.16 Score=52.23 Aligned_cols=22 Identities=41% Similarity=0.484 Sum_probs=20.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 004209 342 NLAIVGHVDSGKSTLSGRLLFL 363 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~~ 363 (768)
.++|+|+.|||||||++.|.+.
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 6899999999999999999853
No 377
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=88.90 E-value=0.17 Score=52.77 Aligned_cols=23 Identities=43% Similarity=0.401 Sum_probs=20.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 004209 341 LNLAIVGHVDSGKSTLSGRLLFL 363 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~ 363 (768)
-.++|+|+.|||||||++.|++.
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999854
No 378
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=88.88 E-value=0.26 Score=51.84 Aligned_cols=26 Identities=31% Similarity=0.213 Sum_probs=22.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhh
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFLL 364 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~ 364 (768)
....|+|+|.+|||||||++.|....
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999887653
No 379
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=88.84 E-value=0.28 Score=47.38 Aligned_cols=27 Identities=30% Similarity=0.277 Sum_probs=23.2
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCc
Q 004209 340 QLNLAIVGHVDSGKSTLSGRLLFLLGR 366 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~~~~ 366 (768)
...|+|+|.+||||||+...|....+.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~ 38 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGF 38 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 357999999999999999999876553
No 380
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=88.80 E-value=0.2 Score=50.36 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=22.8
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHh
Q 004209 338 MTQLNLAIVGHVDSGKSTLSGRLLFL 363 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~ 363 (768)
.+...|+|+|..|||||||++.|.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 44568999999999999999999865
No 381
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=88.74 E-value=0.17 Score=52.95 Aligned_cols=22 Identities=27% Similarity=0.261 Sum_probs=20.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 004209 342 NLAIVGHVDSGKSTLSGRLLFL 363 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~~ 363 (768)
.++|+|+.|||||||++.|++.
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 6899999999999999999864
No 382
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=88.70 E-value=0.18 Score=52.38 Aligned_cols=22 Identities=41% Similarity=0.406 Sum_probs=20.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 004209 342 NLAIVGHVDSGKSTLSGRLLFL 363 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~~ 363 (768)
.++|+|+.|||||||++.|.+.
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 6899999999999999999853
No 383
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=88.69 E-value=0.26 Score=47.86 Aligned_cols=22 Identities=32% Similarity=0.347 Sum_probs=20.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHH
Q 004209 341 LNLAIVGHVDSGKSTLSGRLLF 362 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~ 362 (768)
..|+|+|..|+|||||+.+|+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999984
No 384
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=88.68 E-value=0.28 Score=52.59 Aligned_cols=27 Identities=41% Similarity=0.390 Sum_probs=23.4
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhh
Q 004209 338 MTQLNLAIVGHVDSGKSTLSGRLLFLL 364 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~~ 364 (768)
..++.|+|+|.+|||||||++.|....
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999997654
No 385
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=88.63 E-value=0.32 Score=47.79 Aligned_cols=25 Identities=40% Similarity=0.430 Sum_probs=21.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHh
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFL 363 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~ 363 (768)
....|+|+|..|+|||||++.|...
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3467999999999999999999864
No 386
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=88.55 E-value=1.8 Score=48.53 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=21.8
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHH
Q 004209 338 MTQLNLAIVGHVDSGKSTLSGRLLF 362 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~ 362 (768)
.+...|+|+|..++|||+|+|.|+.
T Consensus 65 ~~v~vvsv~G~~~~gks~l~N~ll~ 89 (457)
T 4ido_A 65 KEVVAVSVAGAFRKGKSFLMDFMLR 89 (457)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCchhHHHHHHHH
Confidence 4567889999999999999998874
No 387
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=88.50 E-value=0.18 Score=51.94 Aligned_cols=21 Identities=48% Similarity=0.499 Sum_probs=19.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHH
Q 004209 342 NLAIVGHVDSGKSTLSGRLLF 362 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~ 362 (768)
.++|+|+.|||||||++.|.+
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999985
No 388
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=88.44 E-value=0.29 Score=48.35 Aligned_cols=24 Identities=21% Similarity=0.325 Sum_probs=21.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhC
Q 004209 342 NLAIVGHVDSGKSTLSGRLLFLLG 365 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~~~~ 365 (768)
+|+|+|.+||||||+...|....+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 699999999999999999987654
No 389
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=88.43 E-value=0.22 Score=52.56 Aligned_cols=23 Identities=22% Similarity=0.086 Sum_probs=20.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 004209 341 LNLAIVGHVDSGKSTLSGRLLFL 363 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~ 363 (768)
-.++++|+.|+|||||++.|++.
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTT
T ss_pred CeEEEECCCCCcHHHHHHHhccc
Confidence 36899999999999999999854
No 390
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=88.41 E-value=0.23 Score=47.28 Aligned_cols=25 Identities=40% Similarity=0.489 Sum_probs=21.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCc
Q 004209 342 NLAIVGHVDSGKSTLSGRLLFLLGR 366 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~~~~~ 366 (768)
+|+|+|.+||||||+...|...++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~ 30 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDL 30 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 6999999999999999999876553
No 391
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=88.37 E-value=0.3 Score=51.66 Aligned_cols=27 Identities=37% Similarity=0.405 Sum_probs=23.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhC
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFLLG 365 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~ 365 (768)
....|+|+|..|||||||++.|.+...
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 346799999999999999999987543
No 392
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=88.28 E-value=0.29 Score=45.98 Aligned_cols=24 Identities=33% Similarity=0.415 Sum_probs=21.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhC
Q 004209 342 NLAIVGHVDSGKSTLSGRLLFLLG 365 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~~~~ 365 (768)
+|+|.|.+||||||+...|...++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 699999999999999999987544
No 393
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=88.18 E-value=0.29 Score=48.66 Aligned_cols=26 Identities=27% Similarity=0.210 Sum_probs=22.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCc
Q 004209 341 LNLAIVGHVDSGKSTLSGRLLFLLGR 366 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~ 366 (768)
..|+|+|.+||||||+...|...++.
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~~ 31 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQL 31 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 57999999999999999999877654
No 394
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=88.10 E-value=0.24 Score=47.49 Aligned_cols=24 Identities=29% Similarity=0.285 Sum_probs=21.0
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Q 004209 340 QLNLAIVGHVDSGKSTLSGRLLFL 363 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~ 363 (768)
...++++|++|+|||||+.+|.+.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999854
No 395
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=88.03 E-value=0.26 Score=52.39 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=21.4
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Q 004209 340 QLNLAIVGHVDSGKSTLSGRLLFL 363 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~ 363 (768)
...++|+|..|||||||++.|++.
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHS
T ss_pred ccEEEEEecCCCCHHHHHHHHHhh
Confidence 457899999999999999999964
No 396
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=87.81 E-value=0.22 Score=53.85 Aligned_cols=25 Identities=36% Similarity=0.497 Sum_probs=22.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhC
Q 004209 341 LNLAIVGHVDSGKSTLSGRLLFLLG 365 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~ 365 (768)
-+++|+|..|+|||||++.|.+...
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999997643
No 397
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=87.80 E-value=0.23 Score=52.29 Aligned_cols=22 Identities=27% Similarity=0.342 Sum_probs=20.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHH
Q 004209 341 LNLAIVGHVDSGKSTLSGRLLF 362 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~ 362 (768)
-.++|+|+.|+|||||++.|++
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~G 86 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMG 86 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 3689999999999999999985
No 398
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=87.73 E-value=0.24 Score=53.75 Aligned_cols=23 Identities=30% Similarity=0.394 Sum_probs=20.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 004209 341 LNLAIVGHVDSGKSTLSGRLLFL 363 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~ 363 (768)
-.|+|+|+.|||||||++.|++.
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 36999999999999999999953
No 399
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=87.65 E-value=0.29 Score=53.19 Aligned_cols=23 Identities=30% Similarity=0.254 Sum_probs=20.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 004209 341 LNLAIVGHVDSGKSTLSGRLLFL 363 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~ 363 (768)
-.|+|+|++|||||||++.|++.
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 37999999999999999999853
No 400
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=87.65 E-value=0.39 Score=36.89 Aligned_cols=31 Identities=26% Similarity=0.535 Sum_probs=27.8
Q ss_pred ceeecccccCCCCCcccccccCCCCCccccC
Q 004209 50 VWSCAICTYDNEEGMSVCDICGVLRTPLVNN 80 (768)
Q Consensus 50 ~w~c~~c~~~n~~~~~~c~~c~~~r~~~~~~ 80 (768)
.|+|.-|.--|++....|..|=..|...+-.
T Consensus 11 ~WkC~~C~k~N~Pl~ryC~rCwaLRk~Wlpd 41 (53)
T 2cr8_A 11 EWQCTECKKFNSPSKRYCFRCWALRKDWYSD 41 (53)
T ss_dssp CEECSSSCCEECSSCCBCTTTCCBCCCCCCC
T ss_pred eeecccccccCCCccchhHHHHHhhcccCCC
Confidence 6999999999999999999999999875433
No 401
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=87.59 E-value=0.15 Score=54.29 Aligned_cols=23 Identities=39% Similarity=0.494 Sum_probs=20.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 004209 341 LNLAIVGHVDSGKSTLSGRLLFL 363 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~ 363 (768)
-.++|+|+.|||||||++.|++.
T Consensus 81 e~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTTS
T ss_pred CEEEEECCCCchHHHHHHHHHcC
Confidence 46999999999999999999854
No 402
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=87.52 E-value=0.23 Score=51.55 Aligned_cols=22 Identities=36% Similarity=0.407 Sum_probs=20.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 004209 342 NLAIVGHVDSGKSTLSGRLLFL 363 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~~ 363 (768)
.++|+|+.|||||||++.|.+.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999864
No 403
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=87.48 E-value=0.68 Score=46.21 Aligned_cols=66 Identities=17% Similarity=0.213 Sum_probs=47.1
Q ss_pred CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcC--CCeEEEEEeccccc
Q 004209 417 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFG--VDQLIVAVNKMDAV 492 (768)
Q Consensus 417 ~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lg--ip~iIVVvNKmDlv 492 (768)
.+.++|||||+.... .+...+..+|.+|+|+.+.... ...+...+..+..++ .+.+.+|+|+++..
T Consensus 118 ~yD~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~ 185 (245)
T 3ea0_A 118 FYDYIIVDFGASIDH--VGVWVLEHLDELCIVTTPSLQS--------LRRAGQLLKLCKEFEKPISRIEIILNRADTN 185 (245)
T ss_dssp HCSEEEEEEESSCCT--THHHHGGGCSEEEEEECSSHHH--------HHHHHHHHHHHHTCSSCCSCEEEEEESTTSC
T ss_pred hCCEEEEeCCCCCch--HHHHHHHHCCEEEEEecCcHHH--------HHHHHHHHHHHHHhCCCccceEEEEecCCCC
Confidence 478999999986543 3344577899999999886421 235566667777776 44578999999854
No 404
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=87.42 E-value=0.33 Score=47.96 Aligned_cols=25 Identities=36% Similarity=0.539 Sum_probs=21.9
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhC
Q 004209 340 QLNLAIVGHVDSGKSTLSGRLLFLLG 365 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~~~ 365 (768)
...|+|.|..||||||+.+.|.. .+
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~-lg 28 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD-LG 28 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH-TT
T ss_pred ceEEEEECCCCCCHHHHHHHHHH-cC
Confidence 46899999999999999999976 44
No 405
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=87.41 E-value=0.21 Score=53.61 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=20.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 004209 341 LNLAIVGHVDSGKSTLSGRLLFL 363 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~ 363 (768)
-.++|+|+.|||||||++.|++.
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGG
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36999999999999999999854
No 406
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=87.27 E-value=0.29 Score=46.92 Aligned_cols=26 Identities=42% Similarity=0.477 Sum_probs=21.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCc
Q 004209 341 LNLAIVGHVDSGKSTLSGRLLFLLGR 366 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~ 366 (768)
.+|+|+|.+||||||+...|...++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~ 28 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGV 28 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCC
Confidence 35999999999999999999875443
No 407
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=87.21 E-value=0.37 Score=46.05 Aligned_cols=24 Identities=50% Similarity=0.732 Sum_probs=20.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhC
Q 004209 342 NLAIVGHVDSGKSTLSGRLLFLLG 365 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~~~~ 365 (768)
..+|+|..|+|||||+.+|.+.++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 578999999999999999987543
No 408
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=87.21 E-value=0.3 Score=53.22 Aligned_cols=22 Identities=27% Similarity=0.273 Sum_probs=20.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHH
Q 004209 341 LNLAIVGHVDSGKSTLSGRLLF 362 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~ 362 (768)
-.|+|+|++|||||||++.|++
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4699999999999999999985
No 409
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=87.13 E-value=0.36 Score=49.27 Aligned_cols=28 Identities=36% Similarity=0.434 Sum_probs=23.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCc
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGR 366 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~ 366 (768)
.++.|+|.|++|+|||||...|...++.
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg~ 35 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALGA 35 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4578999999999999999999876553
No 410
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=86.97 E-value=0.39 Score=47.68 Aligned_cols=26 Identities=31% Similarity=0.303 Sum_probs=22.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCc
Q 004209 341 LNLAIVGHVDSGKSTLSGRLLFLLGR 366 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~ 366 (768)
.+|+|+|.+||||||+...|...++.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~ 31 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGL 31 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCc
Confidence 57999999999999999999876543
No 411
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=86.90 E-value=0.69 Score=47.96 Aligned_cols=67 Identities=21% Similarity=0.318 Sum_probs=46.8
Q ss_pred CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEeccccc
Q 004209 417 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV 492 (768)
Q Consensus 417 ~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv 492 (768)
.+.++|||||+...... ...-+..+|.+|+|+.+.... .....+.+..+...+++.+-+|+|++|.-
T Consensus 191 ~yD~VIIDtpp~~~~~d-~~~l~~~aD~vilVv~~~~~~--------~~~~~~~~~~l~~~~~~~~GvVlN~~~~~ 257 (271)
T 3bfv_A 191 NYNFVIIDTPPVNTVTD-AQLFSKFTGNVVYVVNSENNN--------KDEVKKGKELIEATGAKLLGVVLNRMPKD 257 (271)
T ss_dssp HCSEEEEECCCTTTCSH-HHHHHHHHCEEEEEEETTSCC--------HHHHHHHHHHHHTTTCEEEEEEEEEECC-
T ss_pred CCCEEEEeCCCCchHHH-HHHHHHHCCEEEEEEeCCCCc--------HHHHHHHHHHHHhCCCCEEEEEEeCCcCC
Confidence 36799999999644322 222345689999999987642 34566667777778887555899999964
No 412
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=86.90 E-value=1.8 Score=43.87 Aligned_cols=67 Identities=13% Similarity=0.194 Sum_probs=41.6
Q ss_pred CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH------cCCCeEEEEEecc
Q 004209 416 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS------FGVDQLIVAVNKM 489 (768)
Q Consensus 416 ~~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~------lgip~iIVVvNKm 489 (768)
..+.++|||||+..... +...+..+|.+|+|+.+.... + ..+...+..+.. .+++.+-+|+|+.
T Consensus 110 ~~yD~iiiD~pp~~~~~--~~~~l~~aD~viiv~~~~~~s----~----~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~ 179 (257)
T 1wcv_1 110 EGYDLVLLDAPPSLSPL--TLNALAAAEGVVVPVQAEYYA----L----EGVAGLLATLEEVRAGLNPRLRLLGILVTMY 179 (257)
T ss_dssp TTCSEEEEECCSSCCHH--HHHHHHHCSEEEEEEESSTHH----H----HHHHHHHHHHHHHHHHTCTTCEEEEEEEESB
T ss_pred cCCCEEEEeCCCCCCHH--HHHHHHHCCeEEEEecCchHH----H----HHHHHHHHHHHHHHHHhCCCceEEEEEEEeE
Confidence 56889999999865433 334456799999999987531 1 122233333322 1454224899999
Q ss_pred ccc
Q 004209 490 DAV 492 (768)
Q Consensus 490 Dlv 492 (768)
|..
T Consensus 180 ~~~ 182 (257)
T 1wcv_1 180 DGR 182 (257)
T ss_dssp CTT
T ss_pred CCC
Confidence 854
No 413
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=86.81 E-value=0.19 Score=49.25 Aligned_cols=22 Identities=36% Similarity=0.300 Sum_probs=19.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 004209 342 NLAIVGHVDSGKSTLSGRLLFL 363 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~~ 363 (768)
.|+|+|..|||||||+..|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999999854
No 414
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=86.78 E-value=0.38 Score=50.40 Aligned_cols=26 Identities=19% Similarity=0.277 Sum_probs=22.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhh
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFLL 364 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~ 364 (768)
....|+|+|.+|||||||..+|....
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35679999999999999999998654
No 415
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=86.75 E-value=0.37 Score=46.16 Aligned_cols=23 Identities=35% Similarity=0.351 Sum_probs=20.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhh
Q 004209 342 NLAIVGHVDSGKSTLSGRLLFLL 364 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~~~ 364 (768)
.|+|.|.+||||||+...|....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998643
No 416
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=86.75 E-value=0.39 Score=45.27 Aligned_cols=26 Identities=35% Similarity=0.502 Sum_probs=22.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCc
Q 004209 341 LNLAIVGHVDSGKSTLSGRLLFLLGR 366 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~ 366 (768)
.+|+|.|.+||||||+...|...++.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~ 33 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKL 33 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 47999999999999999999875543
No 417
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=86.74 E-value=0.3 Score=49.91 Aligned_cols=27 Identities=15% Similarity=0.195 Sum_probs=23.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhC
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFLLG 365 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~ 365 (768)
.+..|+++|.+||||||+...|....+
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 457899999999999999999986553
No 418
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=86.63 E-value=2 Score=47.25 Aligned_cols=21 Identities=29% Similarity=0.355 Sum_probs=18.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHH
Q 004209 341 LNLAIVGHVDSGKSTLSGRLL 361 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll 361 (768)
-.++|+|.+|+|||||+..|+
T Consensus 179 ei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 179 SITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp SEEEEEESTTSSHHHHHHHHH
T ss_pred cEEEEEcCCCCChHHHHHHHH
Confidence 368999999999999999876
No 419
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=86.58 E-value=0.34 Score=45.66 Aligned_cols=25 Identities=28% Similarity=0.368 Sum_probs=21.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCc
Q 004209 342 NLAIVGHVDSGKSTLSGRLLFLLGR 366 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~~~~~ 366 (768)
.|+|.|.+||||||+...|...++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~ 28 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGY 28 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5999999999999999999876543
No 420
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=86.50 E-value=0.32 Score=53.00 Aligned_cols=22 Identities=32% Similarity=0.428 Sum_probs=20.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 004209 342 NLAIVGHVDSGKSTLSGRLLFL 363 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~~ 363 (768)
.++|+|+.|||||||++.|.+.
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHhcC
Confidence 6899999999999999999853
No 421
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=86.41 E-value=0.33 Score=52.77 Aligned_cols=22 Identities=36% Similarity=0.351 Sum_probs=20.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 004209 342 NLAIVGHVDSGKSTLSGRLLFL 363 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~~ 363 (768)
.++|+|+.|||||||++.|.+.
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCchHHHHHHHHhcC
Confidence 5899999999999999999964
No 422
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=86.39 E-value=0.42 Score=45.62 Aligned_cols=24 Identities=25% Similarity=0.209 Sum_probs=21.1
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Q 004209 340 QLNLAIVGHVDSGKSTLSGRLLFL 363 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~ 363 (768)
...|+++|..||||||+++.|...
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999854
No 423
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=86.37 E-value=0.31 Score=45.89 Aligned_cols=22 Identities=23% Similarity=0.206 Sum_probs=20.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHH
Q 004209 341 LNLAIVGHVDSGKSTLSGRLLF 362 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~ 362 (768)
..++++|++|+|||||+..|.+
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~ 58 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVA 58 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999985
No 424
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=86.34 E-value=2.6 Score=45.37 Aligned_cols=22 Identities=18% Similarity=0.211 Sum_probs=19.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 004209 342 NLAIVGHVDSGKSTLSGRLLFL 363 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~~ 363 (768)
-++|.|.+|+|||||+-.|+..
T Consensus 48 LiiIaG~pG~GKTt~al~ia~~ 69 (338)
T 4a1f_A 48 LVIIGARPSMGKTSLMMNMVLS 69 (338)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 4789999999999999988754
No 425
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=86.28 E-value=0.43 Score=48.93 Aligned_cols=24 Identities=25% Similarity=0.210 Sum_probs=21.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhC
Q 004209 342 NLAIVGHVDSGKSTLSGRLLFLLG 365 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~~~~ 365 (768)
.|+|+|.+|||||||..+|....+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCC
Confidence 589999999999999999987654
No 426
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=86.27 E-value=0.57 Score=47.25 Aligned_cols=28 Identities=21% Similarity=0.220 Sum_probs=23.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCc
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGR 366 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~ 366 (768)
....|.|+|++||||+|+...|....+.
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~g~ 55 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKFHF 55 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHHCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHCC
Confidence 3455778999999999999999877654
No 427
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=86.26 E-value=2.2 Score=45.74 Aligned_cols=23 Identities=26% Similarity=0.284 Sum_probs=20.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 004209 341 LNLAIVGHVDSGKSTLSGRLLFL 363 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~ 363 (768)
-.+.|+|.+++|||||+-.|+..
T Consensus 123 ~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 123 AITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp EEEEEECCTTCTHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999853
No 428
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=86.26 E-value=1 Score=47.32 Aligned_cols=67 Identities=15% Similarity=0.149 Sum_probs=48.3
Q ss_pred CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEeccccc
Q 004209 417 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV 492 (768)
Q Consensus 417 ~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv 492 (768)
.+.++|||||+....... ..-+..+|.+|+|+.+.... ...+.+.+..+...+++.+-+|+|++|..
T Consensus 213 ~yD~VIIDtpp~~~~~d~-~~l~~~ad~vilV~~~~~~~--------~~~~~~~~~~l~~~~~~~~GvVlN~~~~~ 279 (299)
T 3cio_A 213 HYDLVIVDTPPMLAVSDA-AVVGRSVGTSLLVARFGLNT--------AKEVSLSMQRLEQAGVNIKGAILNGVIKR 279 (299)
T ss_dssp HCSEEEEECCCTTTCTHH-HHHGGGCSEEEEEEETTTSC--------TTHHHHHHHHHHHTTCCCCCEEEEECCCC
T ss_pred CCCEEEEcCCCCchhHHH-HHHHHHCCEEEEEEcCCCCh--------HHHHHHHHHHHHhCCCCeEEEEEeCCccC
Confidence 367999999996543222 22346799999999887642 34667777778888887556889999864
No 429
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=86.22 E-value=0.43 Score=47.66 Aligned_cols=24 Identities=29% Similarity=0.256 Sum_probs=21.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhC
Q 004209 342 NLAIVGHVDSGKSTLSGRLLFLLG 365 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~~~~ 365 (768)
.|+|+|.+||||||+...|....+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999986554
No 430
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=86.18 E-value=1 Score=48.30 Aligned_cols=21 Identities=29% Similarity=0.292 Sum_probs=18.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHH
Q 004209 342 NLAIVGHVDSGKSTLSGRLLF 362 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~ 362 (768)
.+.|.|++|+|||||+.++..
T Consensus 125 viLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 125 MVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp EEEEECSCSSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 468999999999999999984
No 431
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=86.14 E-value=0.44 Score=47.54 Aligned_cols=25 Identities=32% Similarity=0.306 Sum_probs=22.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCc
Q 004209 342 NLAIVGHVDSGKSTLSGRLLFLLGR 366 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~~~~~ 366 (768)
+|+|+|++||||+|+...|....+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~ 26 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGF 26 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
Confidence 6899999999999999999977654
No 432
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=86.07 E-value=0.41 Score=36.07 Aligned_cols=29 Identities=31% Similarity=0.594 Sum_probs=26.5
Q ss_pred CceeecccccCCCCCcccccccCCCCCcc
Q 004209 49 RVWSCAICTYDNEEGMSVCDICGVLRTPL 77 (768)
Q Consensus 49 ~~w~c~~c~~~n~~~~~~c~~c~~~r~~~ 77 (768)
..|+|.-|.--|++....|..|=..|...
T Consensus 12 D~WkC~~C~~~N~Pl~r~C~rCw~LRk~W 40 (46)
T 2c6a_A 12 DYWKCTSCNEMNPPLPSHCNRCWALRENW 40 (46)
T ss_dssp GCEECTTTCCEECSSCSSCTTTCCCCSSC
T ss_pred ceEecccccccCCCccchhhHHHhhcccc
Confidence 35999999999999999999999999763
No 433
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=86.00 E-value=1.8 Score=45.65 Aligned_cols=23 Identities=13% Similarity=0.020 Sum_probs=19.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 004209 341 LNLAIVGHVDSGKSTLSGRLLFL 363 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~ 363 (768)
--+.|.|.+|+|||||+-.|...
T Consensus 69 ~l~li~G~pG~GKTtl~l~ia~~ 91 (315)
T 3bh0_A 69 NFVLIAARPSMGKTAFALKQAKN 91 (315)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHH
Confidence 35889999999999999998753
No 434
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=85.95 E-value=0.3 Score=55.67 Aligned_cols=22 Identities=27% Similarity=0.511 Sum_probs=20.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHH
Q 004209 341 LNLAIVGHVDSGKSTLSGRLLF 362 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~ 362 (768)
.+|+|+|++|||||||+++|++
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~ 282 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMM 282 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGG
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3599999999999999999985
No 435
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=85.88 E-value=0.5 Score=47.44 Aligned_cols=27 Identities=19% Similarity=0.215 Sum_probs=23.4
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCc
Q 004209 340 QLNLAIVGHVDSGKSTLSGRLLFLLGR 366 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~~~~ 366 (768)
..+|+|+|.+|+||||+...|....+.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~~ 42 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFCV 42 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 468999999999999999999876553
No 436
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=85.83 E-value=1.3 Score=45.05 Aligned_cols=67 Identities=13% Similarity=0.187 Sum_probs=44.9
Q ss_pred CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCC-eEEEEEeccccc
Q 004209 416 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVD-QLIVAVNKMDAV 492 (768)
Q Consensus 416 ~~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip-~iIVVvNKmDlv 492 (768)
..+.++|||||+.... .+...+..+|.+|+|+.+.... ...+...+..+..++.. ++.+|+|+++..
T Consensus 143 ~~yD~viiD~pp~~~~--~~~~~l~~aD~vivv~~~~~~s--------~~~~~~~~~~l~~~~~~~~~~vv~N~~~~~ 210 (267)
T 3k9g_A 143 YKYDYIVIDTNPSLDV--TLKNALLCSDYVIIPMTAEKWA--------VESLDLFNFFVRKLNLFLPIFLIITRFKKN 210 (267)
T ss_dssp TTCSEEEEEECSSCSH--HHHHHHTTCSEEEEEEESCTTH--------HHHHHHHHHHHHTTTCCCCEEEEEEEECTT
T ss_pred cCCCEEEEECcCCccH--HHHHHHHHCCeEEEEeCCChHH--------HHHHHHHHHHHHHHhccCCEEEEEecccCc
Confidence 4578999999986543 2444556699999999987531 12344555666666432 367999999543
No 437
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=85.81 E-value=0.4 Score=53.16 Aligned_cols=23 Identities=30% Similarity=0.089 Sum_probs=20.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 004209 341 LNLAIVGHVDSGKSTLSGRLLFL 363 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~ 363 (768)
-.|+|+|++|||||||++.|++.
T Consensus 168 gii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHhh
Confidence 46899999999999999999964
No 438
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=85.77 E-value=0.45 Score=48.86 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=21.1
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Q 004209 340 QLNLAIVGHVDSGKSTLSGRLLFL 363 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~ 363 (768)
...|+|+|.+||||||+...|...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 357999999999999999999854
No 439
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=85.64 E-value=0.38 Score=52.21 Aligned_cols=22 Identities=27% Similarity=0.353 Sum_probs=20.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 004209 342 NLAIVGHVDSGKSTLSGRLLFL 363 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~~ 363 (768)
.++|+|+.|+|||||++.|.+.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5899999999999999999864
No 440
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=85.58 E-value=0.45 Score=45.78 Aligned_cols=23 Identities=35% Similarity=0.224 Sum_probs=20.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhh
Q 004209 342 NLAIVGHVDSGKSTLSGRLLFLL 364 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~~~ 364 (768)
.|+|.|..||||||++..|....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999998654
No 441
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=85.56 E-value=0.53 Score=47.33 Aligned_cols=36 Identities=31% Similarity=0.414 Sum_probs=27.1
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhhCc--cchhhh
Q 004209 337 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGR--ITQKQM 372 (768)
Q Consensus 337 ~~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~--i~~~~~ 372 (768)
......|+|+|..|+||||+...|...++. ++.+.+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~ 50 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAM 50 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCe
Confidence 345568999999999999999999976553 444433
No 442
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=85.47 E-value=0.39 Score=52.19 Aligned_cols=22 Identities=27% Similarity=0.231 Sum_probs=20.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 004209 342 NLAIVGHVDSGKSTLSGRLLFL 363 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~~ 363 (768)
.++|+|+.|+|||||++.|.+.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHHCC
Confidence 5899999999999999999964
No 443
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=85.32 E-value=2 Score=45.54 Aligned_cols=22 Identities=27% Similarity=0.353 Sum_probs=19.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHH
Q 004209 341 LNLAIVGHVDSGKSTLSGRLLF 362 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~ 362 (768)
-.+.|.|.+++|||||+-.|+.
T Consensus 108 ~i~~i~G~~GsGKT~la~~la~ 129 (324)
T 2z43_A 108 TMTEFFGEFGSGKTQLCHQLSV 129 (324)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHhHHHHHHHH
Confidence 3688999999999999999984
No 444
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=85.28 E-value=0.57 Score=45.45 Aligned_cols=24 Identities=38% Similarity=0.486 Sum_probs=21.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhC
Q 004209 342 NLAIVGHVDSGKSTLSGRLLFLLG 365 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~~~~ 365 (768)
.|+|.|.+||||||+...|....+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 799999999999999999987654
No 445
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=85.16 E-value=0.41 Score=52.09 Aligned_cols=22 Identities=36% Similarity=0.379 Sum_probs=20.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 004209 342 NLAIVGHVDSGKSTLSGRLLFL 363 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~~ 363 (768)
.++|+|+.|+|||||++.|.+.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCchHHHHHHHHhcC
Confidence 6899999999999999999864
No 446
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=85.12 E-value=0.39 Score=52.68 Aligned_cols=22 Identities=36% Similarity=0.335 Sum_probs=20.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 004209 342 NLAIVGHVDSGKSTLSGRLLFL 363 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~~ 363 (768)
.++|+|+.|||||||++.|.+.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHHcC
Confidence 5899999999999999999964
No 447
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=85.08 E-value=0.42 Score=52.21 Aligned_cols=22 Identities=23% Similarity=0.249 Sum_probs=20.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 004209 342 NLAIVGHVDSGKSTLSGRLLFL 363 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~~ 363 (768)
.++|+|+.|+|||||++.|.+.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCcHHHHHHHHHHcC
Confidence 5899999999999999999864
No 448
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=85.07 E-value=0.44 Score=49.10 Aligned_cols=26 Identities=31% Similarity=0.415 Sum_probs=22.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCc
Q 004209 341 LNLAIVGHVDSGKSTLSGRLLFLLGR 366 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~ 366 (768)
.+|+|+|..|+|||||...|...++.
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg~ 74 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLGY 74 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 46999999999999999999876554
No 449
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=84.89 E-value=0.48 Score=46.56 Aligned_cols=23 Identities=22% Similarity=0.366 Sum_probs=20.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 004209 341 LNLAIVGHVDSGKSTLSGRLLFL 363 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~ 363 (768)
-.++|+|++|+|||||+..|++.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 36899999999999999999853
No 450
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=84.85 E-value=0.43 Score=52.11 Aligned_cols=22 Identities=27% Similarity=0.280 Sum_probs=20.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 004209 342 NLAIVGHVDSGKSTLSGRLLFL 363 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~~ 363 (768)
.++|+|+.|+|||||++.|.+.
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHHcC
Confidence 6899999999999999999864
No 451
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=84.78 E-value=0.63 Score=48.45 Aligned_cols=26 Identities=38% Similarity=0.484 Sum_probs=22.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhC
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFLLG 365 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~ 365 (768)
....|+|.|.+||||||+...|. ..+
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La-~lg 99 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK-NLG 99 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH-HHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHH-HCC
Confidence 45789999999999999999998 444
No 452
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=84.70 E-value=1.8 Score=49.67 Aligned_cols=42 Identities=10% Similarity=0.087 Sum_probs=30.5
Q ss_pred CEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEeccccc
Q 004209 443 DAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV 492 (768)
Q Consensus 443 D~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv 492 (768)
+.+++|+.+.... ...+...+..+...|++..-||+|++.-.
T Consensus 199 t~vvlV~~~~~~~--------~~~~~~~~~~L~~~g~~~~gvVlN~v~~~ 240 (589)
T 1ihu_A 199 TRLVLVARLQKST--------LQEVARTHLELAAIGLKNQYLVINGVLPK 240 (589)
T ss_dssp EEEEEEEESCHHH--------HHHHHHHHHHHHHHTCCCEEEEEEEECCG
T ss_pred cEEEEEeCCCccH--------HHHHHHHHHHHHhCCCCCCEEEEcCCcCc
Confidence 3688888876431 24566777788888988677889999854
No 453
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=84.62 E-value=0.64 Score=45.79 Aligned_cols=24 Identities=38% Similarity=0.380 Sum_probs=21.2
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Q 004209 340 QLNLAIVGHVDSGKSTLSGRLLFL 363 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~ 363 (768)
...|+|+|.+|+||||++..|...
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999854
No 454
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=84.57 E-value=0.6 Score=46.01 Aligned_cols=28 Identities=25% Similarity=0.426 Sum_probs=23.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCc
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGR 366 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~ 366 (768)
.+..|+++|..||||||+.+.|....+.
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~lg~ 38 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKYGA 38 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 4678999999999999999999875343
No 455
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=84.48 E-value=0.52 Score=48.94 Aligned_cols=23 Identities=17% Similarity=0.202 Sum_probs=20.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhh
Q 004209 342 NLAIVGHVDSGKSTLSGRLLFLL 364 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~~~ 364 (768)
-|+++|++|+|||||+++|.+..
T Consensus 46 GvlL~Gp~GtGKTtLakala~~~ 68 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVANES 68 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCcHHHHHHHHHHHc
Confidence 39999999999999999999654
No 456
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=84.42 E-value=0.46 Score=53.40 Aligned_cols=23 Identities=35% Similarity=0.456 Sum_probs=21.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 004209 341 LNLAIVGHVDSGKSTLSGRLLFL 363 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~ 363 (768)
..|+|+|+.|||||||++.|++.
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCc
Confidence 46999999999999999999865
No 457
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=84.36 E-value=1.8 Score=44.81 Aligned_cols=67 Identities=13% Similarity=0.184 Sum_probs=42.1
Q ss_pred CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH------cCCCeEEEEEecc
Q 004209 416 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS------FGVDQLIVAVNKM 489 (768)
Q Consensus 416 ~~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~------lgip~iIVVvNKm 489 (768)
..+.++|||||+..... +...+..+|.+|+|+.+.... ...+...+..+.. .+++.+-+|+|+.
T Consensus 153 ~~yD~IiiD~pp~~~~~--~~~~l~~aD~viiv~~~~~~s--------~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~ 222 (298)
T 2oze_A 153 SDYDLIIIDTVPTPSVY--TNNAIVASDYVMIPLQAEEES--------TNNIQNYISYLIDLQEQFNPGLDMIGFVPYLV 222 (298)
T ss_dssp GGCSEEEEEECSSCSHH--HHHHHHHCSEEEEEECGGGCC--------HHHHHHHHHHHHHHHHHHCTTCEEEEEEEEES
T ss_pred cCCCEEEEECCCCccHH--HHHHHHHCCeEEEEecCcHHH--------HHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEE
Confidence 35789999999865543 233344699999999987542 1223333333333 2555456899999
Q ss_pred ccc
Q 004209 490 DAV 492 (768)
Q Consensus 490 Dlv 492 (768)
|..
T Consensus 223 ~~~ 225 (298)
T 2oze_A 223 DTD 225 (298)
T ss_dssp CTT
T ss_pred CCC
Confidence 964
No 458
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=84.11 E-value=0.86 Score=45.88 Aligned_cols=66 Identities=15% Similarity=0.173 Sum_probs=44.4
Q ss_pred CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCC--------CeEEEEEec
Q 004209 417 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGV--------DQLIVAVNK 488 (768)
Q Consensus 417 ~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgi--------p~iIVVvNK 488 (768)
.+.++|||||+.... .+...+..+|.+|+|+.+.... ...+...+..+...+. ..+.+|+|+
T Consensus 113 ~yD~viiD~p~~~~~--~~~~~l~~ad~vi~v~~~~~~s--------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~ 182 (260)
T 3q9l_A 113 DFEFIVCDSPAGIET--GALMALYFADEAIITTNPEVSS--------VRDSDRILGILASKSRRAENGEEPIKEHLLLTR 182 (260)
T ss_dssp TCSEEEEECCSSSSH--HHHHHHHTCSEEEEEECSSHHH--------HHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEE
T ss_pred CCCEEEEcCCCCCCH--HHHHHHHhCCEEEEEecCChhH--------HHHHHHHHHHHHHhccccccccCCcceEEEEec
Confidence 688999999985542 4555667899999999986431 1234444455544431 347899999
Q ss_pred cccc
Q 004209 489 MDAV 492 (768)
Q Consensus 489 mDlv 492 (768)
+|..
T Consensus 183 ~~~~ 186 (260)
T 3q9l_A 183 YNPG 186 (260)
T ss_dssp ECHH
T ss_pred CCcc
Confidence 9853
No 459
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=84.00 E-value=0.53 Score=51.71 Aligned_cols=22 Identities=41% Similarity=0.602 Sum_probs=20.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 004209 342 NLAIVGHVDSGKSTLSGRLLFL 363 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~~ 363 (768)
.++|+|+.|+|||||++.|.+.
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 6899999999999999999864
No 460
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=83.99 E-value=1.7 Score=47.08 Aligned_cols=22 Identities=32% Similarity=0.375 Sum_probs=19.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHH
Q 004209 341 LNLAIVGHVDSGKSTLSGRLLF 362 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~ 362 (768)
-.+.|.|.+++|||||+-+|+.
T Consensus 64 ~ii~I~G~pGsGKTtLal~la~ 85 (356)
T 1u94_A 64 RIVEIYGPESSGKTTLTLQVIA 85 (356)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999884
No 461
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=83.89 E-value=0.58 Score=48.66 Aligned_cols=22 Identities=18% Similarity=0.203 Sum_probs=19.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 004209 342 NLAIVGHVDSGKSTLSGRLLFL 363 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~~ 363 (768)
.++|+|++|+|||||+..|++.
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 5899999999999999999854
No 462
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=83.70 E-value=0.78 Score=46.30 Aligned_cols=27 Identities=22% Similarity=0.230 Sum_probs=23.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhC
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFLLG 365 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~ 365 (768)
....|+|.|.+||||||++..|.....
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 346799999999999999999987654
No 463
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=83.56 E-value=1.4 Score=47.43 Aligned_cols=22 Identities=27% Similarity=0.286 Sum_probs=19.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHH
Q 004209 341 LNLAIVGHVDSGKSTLSGRLLF 362 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~ 362 (768)
-.+.|.|++|+|||||+-+|+.
T Consensus 62 ~iv~I~G~pGsGKTtLal~la~ 83 (349)
T 2zr9_A 62 RVIEIYGPESSGKTTVALHAVA 83 (349)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999884
No 464
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=83.43 E-value=0.64 Score=50.19 Aligned_cols=23 Identities=30% Similarity=0.268 Sum_probs=20.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 004209 341 LNLAIVGHVDSGKSTLSGRLLFL 363 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~ 363 (768)
-+++|+|..|+|||||++.|++.
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999999964
No 465
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=83.36 E-value=0.6 Score=45.96 Aligned_cols=26 Identities=35% Similarity=0.505 Sum_probs=22.6
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhC
Q 004209 340 QLNLAIVGHVDSGKSTLSGRLLFLLG 365 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~~~ 365 (768)
+..|+|+|.+|+||||+...|....+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g 28 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELS 28 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45799999999999999999987654
No 466
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=83.35 E-value=0.63 Score=47.08 Aligned_cols=23 Identities=22% Similarity=0.232 Sum_probs=20.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhh
Q 004209 342 NLAIVGHVDSGKSTLSGRLLFLL 364 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~~~ 364 (768)
.|+++|++|+|||||+.+|.+..
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 49999999999999999998653
No 467
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=83.26 E-value=0.38 Score=52.08 Aligned_cols=22 Identities=18% Similarity=0.282 Sum_probs=20.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 004209 342 NLAIVGHVDSGKSTLSGRLLFL 363 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~~ 363 (768)
.++|+|+.|+|||||++.|.+.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTS
T ss_pred EEEEECCCCccHHHHHHHHHcC
Confidence 6899999999999999999864
No 468
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=83.12 E-value=1.9 Score=46.85 Aligned_cols=21 Identities=29% Similarity=0.311 Sum_probs=18.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHH
Q 004209 342 NLAIVGHVDSGKSTLSGRLLF 362 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~ 362 (768)
.+.|.|.+++|||||+-.|+.
T Consensus 76 li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 76 ITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHHH
Confidence 577899999999999999884
No 469
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=82.37 E-value=0.73 Score=43.29 Aligned_cols=23 Identities=39% Similarity=0.427 Sum_probs=19.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhh
Q 004209 342 NLAIVGHVDSGKSTLSGRLLFLL 364 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~~~ 364 (768)
-.+|+|+.|+|||||+.+|...+
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 45899999999999999998643
No 470
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=82.10 E-value=0.37 Score=52.28 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=20.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 004209 342 NLAIVGHVDSGKSTLSGRLLFL 363 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~~ 363 (768)
.++|+|+.|+|||||++.|.+.
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 6899999999999999999864
No 471
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=82.09 E-value=0.63 Score=53.27 Aligned_cols=23 Identities=35% Similarity=0.291 Sum_probs=21.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 004209 341 LNLAIVGHVDSGKSTLSGRLLFL 363 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~ 363 (768)
-.++|+|+.|||||||++.|.+.
T Consensus 48 e~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 48 MVVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36999999999999999999974
No 472
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=82.04 E-value=0.73 Score=45.00 Aligned_cols=22 Identities=27% Similarity=0.273 Sum_probs=19.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHH
Q 004209 341 LNLAIVGHVDSGKSTLSGRLLF 362 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~ 362 (768)
-.++|+|++|+|||||+..|+.
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999984
No 473
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=82.01 E-value=0.92 Score=42.49 Aligned_cols=24 Identities=21% Similarity=0.282 Sum_probs=20.8
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Q 004209 340 QLNLAIVGHVDSGKSTLSGRLLFL 363 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~ 363 (768)
...|.|.|.+|+|||||+.+|...
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999999853
No 474
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=81.85 E-value=0.72 Score=52.08 Aligned_cols=24 Identities=29% Similarity=0.318 Sum_probs=21.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhh
Q 004209 341 LNLAIVGHVDSGKSTLSGRLLFLL 364 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~ 364 (768)
-.++|+|+.|||||||++.|.+..
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcCC
Confidence 368999999999999999998753
No 475
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=81.58 E-value=0.62 Score=53.71 Aligned_cols=23 Identities=35% Similarity=0.497 Sum_probs=20.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 004209 341 LNLAIVGHVDSGKSTLSGRLLFL 363 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~ 363 (768)
-.++++|+.|+|||||++.|.+.
T Consensus 370 ~~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 370 KTVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp CEEEEEECTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhhc
Confidence 37999999999999999999864
No 476
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=81.45 E-value=0.81 Score=47.11 Aligned_cols=23 Identities=22% Similarity=0.232 Sum_probs=20.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhh
Q 004209 342 NLAIVGHVDSGKSTLSGRLLFLL 364 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~~~ 364 (768)
.|+|+|++|+|||||+.+|.+..
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCcChHHHHHHHHHHHc
Confidence 49999999999999999998653
No 477
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=81.44 E-value=0.84 Score=45.33 Aligned_cols=22 Identities=18% Similarity=0.308 Sum_probs=20.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHH
Q 004209 341 LNLAIVGHVDSGKSTLSGRLLF 362 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~ 362 (768)
-.++|+|++|+|||||+..|+.
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHH
Confidence 3689999999999999999985
No 478
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=81.44 E-value=0.66 Score=53.48 Aligned_cols=23 Identities=35% Similarity=0.485 Sum_probs=20.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 004209 341 LNLAIVGHVDSGKSTLSGRLLFL 363 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~ 363 (768)
-.++++|+.|+|||||++.|++.
T Consensus 370 ~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 370 KTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999999864
No 479
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=81.33 E-value=0.83 Score=47.37 Aligned_cols=23 Identities=26% Similarity=0.287 Sum_probs=20.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 004209 341 LNLAIVGHVDSGKSTLSGRLLFL 363 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~ 363 (768)
..|+|+|.+||||||+..+|...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999863
No 480
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=81.21 E-value=0.77 Score=49.78 Aligned_cols=22 Identities=27% Similarity=0.327 Sum_probs=19.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 004209 342 NLAIVGHVDSGKSTLSGRLLFL 363 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~~ 363 (768)
-++|+|+.|||||||+++|++.
T Consensus 25 ~~~i~G~NGaGKTTll~ai~~a 46 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAISFA 46 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3569999999999999999864
No 481
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=81.20 E-value=0.94 Score=46.14 Aligned_cols=27 Identities=22% Similarity=0.368 Sum_probs=22.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhC
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFLLG 365 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~ 365 (768)
.+.+++|+|.+||||||+...|....+
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~~~g 33 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKEKFG 33 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred cccceeeECCCCCCHHHHHHHHHHHhC
Confidence 357899999999999999999987654
No 482
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=80.95 E-value=0.84 Score=48.58 Aligned_cols=24 Identities=25% Similarity=0.245 Sum_probs=21.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhh
Q 004209 341 LNLAIVGHVDSGKSTLSGRLLFLL 364 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~ 364 (768)
-.++++|++|+|||||+..|.+..
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 358999999999999999999765
No 483
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=80.68 E-value=3.2 Score=43.60 Aligned_cols=22 Identities=18% Similarity=0.181 Sum_probs=19.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHH
Q 004209 341 LNLAIVGHVDSGKSTLSGRLLF 362 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~ 362 (768)
-.+.|.|.+++|||||+-.|..
T Consensus 99 ~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 99 SVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999984
No 484
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=80.55 E-value=0.92 Score=50.56 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=20.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 004209 341 LNLAIVGHVDSGKSTLSGRLLFL 363 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~ 363 (768)
-+++|+|+.|+|||||++.|.+.
T Consensus 158 q~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 158 QRMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 47999999999999999999953
No 485
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=80.23 E-value=1.1 Score=45.20 Aligned_cols=23 Identities=22% Similarity=0.250 Sum_probs=20.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 004209 341 LNLAIVGHVDSGKSTLSGRLLFL 363 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~ 363 (768)
..|.++|++|+|||||+.+|.+.
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 46999999999999999999854
No 486
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=80.16 E-value=3.7 Score=42.43 Aligned_cols=35 Identities=14% Similarity=0.303 Sum_probs=27.5
Q ss_pred CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCC
Q 004209 417 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASV 453 (768)
Q Consensus 417 ~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~ 453 (768)
.+.++|||||+.. ...+...+..+|.+|+|+.+..
T Consensus 103 ~yD~viiD~p~~~--~~~~~~~l~~aD~viiv~~~~~ 137 (286)
T 2xj4_A 103 ECDFILIDTPGGD--SAITRMAHGRADLVVTPMNDSF 137 (286)
T ss_dssp HCSEEEEECCSSC--CHHHHHHHHTCSEEEEEEESSH
T ss_pred cCCEEEEcCCCCc--cHHHHHHHHHCCEEEEEEcCCc
Confidence 4689999999975 3345566788999999998764
No 487
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=79.99 E-value=1.1 Score=48.86 Aligned_cols=24 Identities=42% Similarity=0.483 Sum_probs=21.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhh
Q 004209 341 LNLAIVGHVDSGKSTLSGRLLFLL 364 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~ 364 (768)
-.|+|+|++|+|||||+..|.+..
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 478999999999999999998653
No 488
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=79.93 E-value=0.72 Score=52.83 Aligned_cols=23 Identities=26% Similarity=0.208 Sum_probs=21.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 004209 341 LNLAIVGHVDSGKSTLSGRLLFL 363 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~ 363 (768)
-.++|+|+.|||||||++.|++.
T Consensus 26 ei~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 26 TILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 46899999999999999999975
No 489
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=79.87 E-value=0.83 Score=53.12 Aligned_cols=23 Identities=35% Similarity=0.183 Sum_probs=21.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 004209 341 LNLAIVGHVDSGKSTLSGRLLFL 363 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~ 363 (768)
-.++|+|+.|+|||||++.|.+.
T Consensus 104 ei~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 104 QVLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCChHHHHHHHHhcC
Confidence 46999999999999999999975
No 490
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=79.80 E-value=11 Score=39.72 Aligned_cols=25 Identities=20% Similarity=0.195 Sum_probs=21.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHh
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFL 363 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~ 363 (768)
+...|.+.|++|+|||+|+.+|...
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCceEEEECCCCccHHHHHHHHHHH
Confidence 3467999999999999999999853
No 491
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=79.58 E-value=0.61 Score=48.98 Aligned_cols=26 Identities=15% Similarity=0.266 Sum_probs=19.4
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhC
Q 004209 340 QLNLAIVGHVDSGKSTLSGRLLFLLG 365 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~~~ 365 (768)
.+.|+|.|..||||||+.+.|....+
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 46799999999999999999986543
No 492
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.53 E-value=4.9 Score=44.68 Aligned_cols=26 Identities=15% Similarity=0.245 Sum_probs=22.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhh
Q 004209 339 TQLNLAIVGHVDSGKSTLSGRLLFLL 364 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~ 364 (768)
++.-|.+.|++|.|||+|+.+|.+.+
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~e~ 239 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAATI 239 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 45689999999999999999999643
No 493
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=79.42 E-value=1.2 Score=47.50 Aligned_cols=26 Identities=35% Similarity=0.276 Sum_probs=22.4
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhC
Q 004209 340 QLNLAIVGHVDSGKSTLSGRLLFLLG 365 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~~~ 365 (768)
...|+|+|++++|||||...|....+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCc
Confidence 45689999999999999999987654
No 494
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=79.15 E-value=0.65 Score=53.76 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=20.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 004209 341 LNLAIVGHVDSGKSTLSGRLLFL 363 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~ 363 (768)
-.++++|+.|+|||||++.|++.
T Consensus 382 ~~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 382 QKVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp CEEEEECCTTSSTTHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 47999999999999999999864
No 495
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=79.13 E-value=0.91 Score=51.94 Aligned_cols=23 Identities=30% Similarity=0.273 Sum_probs=20.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 004209 341 LNLAIVGHVDSGKSTLSGRLLFL 363 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~ 363 (768)
-.++|+|+.|+|||||++.|.+.
T Consensus 313 e~~~i~G~NGsGKSTLlk~l~Gl 335 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKMLAGV 335 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999963
No 496
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=79.13 E-value=0.63 Score=53.81 Aligned_cols=23 Identities=48% Similarity=0.450 Sum_probs=20.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 004209 341 LNLAIVGHVDSGKSTLSGRLLFL 363 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~ 363 (768)
-.++++|+.|+|||||++.|.+.
T Consensus 371 ~~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 371 SVTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp CEEEEECCTTSSSTHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 37999999999999999999854
No 497
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=78.93 E-value=1.2 Score=43.03 Aligned_cols=23 Identities=22% Similarity=0.196 Sum_probs=20.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 004209 341 LNLAIVGHVDSGKSTLSGRLLFL 363 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~ 363 (768)
..|.|.|.+|+|||||+.+|...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 67999999999999999999853
No 498
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=78.89 E-value=1.8 Score=47.26 Aligned_cols=73 Identities=19% Similarity=0.246 Sum_probs=43.1
Q ss_pred CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCC----eEEEEEecccc
Q 004209 416 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVD----QLIVAVNKMDA 491 (768)
Q Consensus 416 ~~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip----~iIVVvNKmDl 491 (768)
..+.++|||||..... .++..+..+|.+|+|+....-.+.+...+ .....+.+..+...+.+ .++.++|+.+.
T Consensus 246 ~~yD~VIID~pP~~~~--~~~~al~~aD~vliv~~p~~~~~~~~~~~-l~~l~~~~~~l~~~~~~~~l~giv~vl~~~~~ 322 (403)
T 3ez9_A 246 DDYDFIFIDTGPHLDP--FLLNGLAASDLLLTPTPPAQVDFHSTLKY-LTRLPEMLEQLEEEGVEPRLSASIGFMSKMTG 322 (403)
T ss_dssp GGCSEEEEEECSSCSH--HHHHHHHHCSEEEEEECSSHHHHHHHHHH-HHTHHHHHHHHHHTTCCCCCCEEEEEECC---
T ss_pred hcCCEEEEECCCCccH--HHHHHHHHCCEEEEEecCchhhHHHHHHH-HHHHHHHHHHHHhcCCCCceeEEEEEEeccCC
Confidence 3578999999986653 34556678999999998753221111111 13444555566665544 24668999883
No 499
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=78.59 E-value=0.83 Score=53.09 Aligned_cols=21 Identities=33% Similarity=0.289 Sum_probs=0.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHH
Q 004209 342 NLAIVGHVDSGKSTLSGRLLF 362 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~ 362 (768)
.++|+|+.|+|||||++.|.+
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~G 139 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAG 139 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCChHHHHHHHHhC
No 500
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=78.52 E-value=1.3 Score=44.41 Aligned_cols=25 Identities=32% Similarity=0.335 Sum_probs=22.1
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhh
Q 004209 340 QLNLAIVGHVDSGKSTLSGRLLFLL 364 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~~ 364 (768)
...|+|.|..|+||||+++.|...+
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999998765
Done!