Query 004210
Match_columns 768
No_of_seqs 385 out of 2734
Neff 8.8
Searched_HMMs 46136
Date Thu Mar 28 19:27:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004210.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004210hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0103 Molecular chaperones H 100.0 1E-124 2E-129 1007.5 64.9 723 1-744 1-727 (727)
2 KOG0100 Molecular chaperones G 100.0 4E-123 8E-128 930.4 58.6 601 2-657 37-643 (663)
3 KOG0104 Molecular chaperones G 100.0 2E-108 5E-113 881.2 65.5 730 2-741 23-832 (902)
4 PTZ00009 heat shock 70 kDa pro 100.0 5E-103 1E-107 906.0 73.9 602 1-657 4-614 (653)
5 PRK13410 molecular chaperone D 100.0 3E-102 6E-107 895.3 72.3 610 1-673 1-621 (668)
6 PRK13411 molecular chaperone D 100.0 1.6E-99 4E-104 875.5 74.2 591 1-656 1-600 (653)
7 PTZ00400 DnaK-type molecular c 100.0 1E-99 2E-104 877.5 72.0 586 2-655 42-636 (663)
8 PRK00290 dnaK molecular chaper 100.0 4.1E-98 9E-103 865.9 75.1 587 1-657 1-597 (627)
9 PLN03184 chloroplast Hsp70; Pr 100.0 2.8E-98 6E-103 865.5 72.2 588 2-655 40-634 (673)
10 PTZ00186 heat shock 70 kDa pre 100.0 4.5E-97 1E-101 847.7 73.3 587 2-654 28-622 (657)
11 CHL00094 dnaK heat shock prote 100.0 5.6E-97 1E-101 853.3 73.0 588 2-657 3-599 (621)
12 TIGR02350 prok_dnaK chaperone 100.0 1.9E-96 4E-101 850.0 73.9 584 2-655 1-593 (595)
13 TIGR01991 HscA Fe-S protein as 100.0 9.4E-94 2E-98 821.0 74.0 579 3-654 1-582 (599)
14 KOG0101 Molecular chaperones H 100.0 5.6E-96 1E-100 797.4 50.6 601 1-657 7-614 (620)
15 PF00012 HSP70: Hsp70 protein; 100.0 4.4E-93 9.6E-98 831.1 66.8 594 3-656 1-601 (602)
16 PRK05183 hscA chaperone protei 100.0 3.4E-92 7.4E-97 809.5 71.8 578 2-655 20-599 (616)
17 PRK01433 hscA chaperone protei 100.0 1.7E-86 3.6E-91 755.0 69.9 551 2-656 20-579 (595)
18 KOG0102 Molecular chaperones m 100.0 5.2E-89 1.1E-93 710.3 44.1 587 2-653 28-623 (640)
19 COG0443 DnaK Molecular chapero 100.0 2.2E-85 4.8E-90 741.1 59.8 569 2-656 6-577 (579)
20 PRK11678 putative chaperone; P 100.0 6.3E-55 1.4E-59 479.6 37.8 337 3-381 2-448 (450)
21 PRK13928 rod shape-determining 100.0 2.6E-38 5.7E-43 340.9 33.3 307 4-381 6-324 (336)
22 PRK13929 rod-share determining 100.0 9.8E-38 2.1E-42 335.2 32.2 305 3-378 6-324 (335)
23 PRK13927 rod shape-determining 100.0 5.5E-35 1.2E-39 315.6 30.7 305 3-380 7-324 (334)
24 TIGR00904 mreB cell shape dete 100.0 9.6E-35 2.1E-39 313.0 31.5 305 4-380 5-327 (333)
25 PRK13930 rod shape-determining 100.0 1E-33 2.2E-38 306.2 31.0 308 3-381 10-329 (335)
26 PF06723 MreB_Mbl: MreB/Mbl pr 100.0 1.6E-31 3.4E-36 279.7 23.1 306 3-379 3-320 (326)
27 TIGR02529 EutJ ethanolamine ut 100.0 7.3E-30 1.6E-34 259.6 22.8 200 116-376 39-238 (239)
28 COG1077 MreB Actin-like ATPase 100.0 1.1E-28 2.3E-33 246.9 27.1 310 2-382 7-333 (342)
29 PRK15080 ethanolamine utilizat 100.0 1.5E-26 3.3E-31 239.6 28.0 202 116-378 66-267 (267)
30 TIGR01174 ftsA cell division p 99.9 6.7E-22 1.5E-26 216.3 28.1 194 152-377 158-371 (371)
31 PRK09472 ftsA cell division pr 99.9 1.6E-20 3.4E-25 207.8 30.6 195 155-380 169-388 (420)
32 COG0849 ftsA Cell division ATP 99.8 2.3E-16 5E-21 169.6 27.6 197 154-381 167-381 (418)
33 COG4820 EutJ Ethanolamine util 99.7 3.3E-16 7.1E-21 145.4 10.9 197 121-378 76-272 (277)
34 cd00012 ACTIN Actin; An ubiqui 99.7 2.1E-15 4.6E-20 165.5 18.9 301 3-380 1-347 (371)
35 smart00268 ACTIN Actin. ACTIN 99.6 3.5E-14 7.5E-19 156.1 16.3 301 2-380 2-347 (373)
36 PRK13917 plasmid segregation p 99.6 4.4E-13 9.5E-18 144.2 24.2 209 141-383 115-339 (344)
37 PTZ00280 Actin-related protein 99.4 1.2E-10 2.6E-15 129.3 25.6 206 139-357 103-337 (414)
38 PF00022 Actin: Actin; InterP 99.3 2.3E-11 5E-16 134.8 15.4 309 2-381 5-368 (393)
39 PF11104 PilM_2: Type IV pilus 99.3 1.8E-10 4E-15 124.5 22.0 182 152-378 136-339 (340)
40 TIGR03739 PRTRC_D PRTRC system 99.3 2E-10 4.3E-15 123.0 19.7 208 137-378 101-318 (320)
41 TIGR01175 pilM type IV pilus a 99.3 5.7E-10 1.2E-14 121.5 23.4 183 151-378 142-347 (348)
42 PTZ00452 actin; Provisional 99.2 5.9E-10 1.3E-14 121.7 18.4 218 137-379 99-348 (375)
43 PTZ00281 actin; Provisional 99.2 6.6E-10 1.4E-14 121.7 16.5 218 138-380 101-350 (376)
44 PTZ00004 actin-2; Provisional 99.1 1.5E-09 3.2E-14 119.1 18.0 217 138-379 101-351 (378)
45 PTZ00466 actin-like protein; P 99.1 4.3E-09 9.4E-14 115.1 18.4 217 138-379 106-353 (380)
46 TIGR00241 CoA_E_activ CoA-subs 99.0 1.1E-08 2.3E-13 105.6 17.9 170 170-377 73-248 (248)
47 COG4972 PilM Tfp pilus assembl 99.0 1.8E-07 3.9E-12 95.2 25.7 159 154-359 151-314 (354)
48 PF06406 StbA: StbA protein; 99.0 6.1E-09 1.3E-13 111.2 15.6 173 167-375 141-316 (318)
49 TIGR03192 benz_CoA_bzdQ benzoy 99.0 1E-07 2.2E-12 97.8 22.5 180 170-380 106-288 (293)
50 KOG0679 Actin-related protein 98.9 1.2E-07 2.7E-12 97.6 19.3 116 117-246 86-202 (426)
51 COG1924 Activator of 2-hydroxy 98.8 9.2E-07 2E-11 91.8 20.9 177 167-380 208-390 (396)
52 TIGR03286 methan_mark_15 putat 98.7 1.9E-06 4E-11 92.1 21.4 175 170-379 220-402 (404)
53 TIGR02261 benz_CoA_red_D benzo 98.6 7.5E-06 1.6E-10 83.1 23.0 177 171-378 80-262 (262)
54 COG5277 Actin and related prot 98.6 1.5E-06 3.1E-11 95.8 17.6 192 4-246 9-204 (444)
55 PRK10719 eutA reactivating fac 98.5 3.2E-07 7E-12 99.1 10.5 164 138-345 88-268 (475)
56 PF07520 SrfB: Virulence facto 98.4 8.3E-05 1.8E-09 87.1 24.6 330 48-382 331-836 (1002)
57 PRK13317 pantothenate kinase; 98.2 0.00013 2.8E-09 75.8 20.4 48 332-379 222-273 (277)
58 PRK15027 xylulokinase; Provisi 98.2 0.00021 4.5E-09 81.5 23.1 85 298-385 355-439 (484)
59 PRK10331 L-fuculokinase; Provi 98.2 0.00014 2.9E-09 82.6 20.8 53 332-385 389-441 (470)
60 TIGR02628 fuculo_kin_coli L-fu 98.1 0.00022 4.9E-09 80.7 22.1 84 298-384 361-444 (465)
61 TIGR02259 benz_CoA_red_A benzo 98.0 0.00015 3.2E-09 76.8 15.4 177 170-378 249-432 (432)
62 TIGR01314 gntK_FGGY gluconate 98.0 0.0011 2.3E-08 76.1 23.5 52 332-384 401-452 (505)
63 COG1070 XylB Sugar (pentulose 98.0 0.00038 8.2E-09 79.5 19.6 81 298-382 369-450 (502)
64 PF08841 DDR: Diol dehydratase 97.8 0.00038 8.2E-09 69.6 13.6 189 162-378 106-329 (332)
65 KOG0676 Actin and related prot 97.7 0.00032 6.9E-09 74.8 12.6 91 139-245 100-192 (372)
66 COG4457 SrfB Uncharacterized p 97.6 0.009 2E-07 66.3 21.6 50 332-381 778-847 (1014)
67 PF06277 EutA: Ethanolamine ut 97.5 0.00088 1.9E-08 72.9 11.5 116 113-235 60-178 (473)
68 KOG0797 Actin-related protein 97.0 0.0057 1.2E-07 66.0 11.6 122 111-245 195-322 (618)
69 COG1069 AraB Ribulose kinase [ 96.8 0.098 2.1E-06 57.9 19.2 216 155-384 232-482 (544)
70 COG4819 EutA Ethanolamine util 96.7 0.016 3.5E-07 59.4 11.5 88 141-235 90-180 (473)
71 PF02782 FGGY_C: FGGY family o 96.7 0.0019 4.1E-08 64.1 5.0 72 305-380 121-196 (198)
72 PF01869 BcrAD_BadFG: BadF/Bad 96.6 0.39 8.6E-06 50.1 22.0 70 306-378 197-271 (271)
73 PLN02669 xylulokinase 96.1 0.016 3.5E-07 66.9 8.2 77 299-380 416-492 (556)
74 TIGR01315 5C_CHO_kinase FGGY-f 96.0 0.018 4E-07 66.4 8.6 83 298-384 409-494 (541)
75 PF14450 FtsA: Cell division p 95.8 0.021 4.6E-07 51.5 6.1 48 197-244 1-53 (120)
76 TIGR01234 L-ribulokinase L-rib 95.6 0.045 9.7E-07 63.3 9.2 83 298-384 404-487 (536)
77 PF14574 DUF4445: Domain of un 95.5 0.4 8.6E-06 52.7 15.6 59 294-353 290-348 (412)
78 KOG0680 Actin-related protein 95.5 0.49 1.1E-05 48.8 14.9 102 138-244 93-198 (400)
79 TIGR00744 ROK_glcA_fam ROK fam 95.5 0.37 8.1E-06 51.6 15.4 45 163-212 96-140 (318)
80 PRK00047 glpK glycerol kinase; 95.4 0.035 7.6E-07 63.6 7.8 52 332-384 403-454 (498)
81 TIGR00555 panK_eukar pantothen 95.4 0.17 3.6E-06 52.5 11.9 153 194-376 100-278 (279)
82 KOG0677 Actin-related protein 95.4 0.18 4E-06 50.0 11.2 194 137-356 100-318 (389)
83 TIGR01312 XylB D-xylulose kina 95.4 0.042 9.1E-07 62.7 8.1 52 332-384 390-441 (481)
84 KOG0100 Molecular chaperones G 95.4 0.16 3.5E-06 53.5 11.3 105 604-745 538-643 (663)
85 PLN02295 glycerol kinase 95.3 0.059 1.3E-06 61.9 9.2 52 332-384 412-463 (512)
86 TIGR01311 glycerol_kin glycero 95.3 0.035 7.6E-07 63.5 7.2 52 332-384 399-450 (493)
87 PRK09604 UGMP family protein; 95.2 4.1 8.8E-05 43.9 22.1 61 315-380 242-308 (332)
88 TIGR02627 rhamnulo_kin rhamnul 95.2 0.078 1.7E-06 60.0 9.3 83 298-385 355-438 (454)
89 PRK04123 ribulokinase; Provisi 95.1 0.044 9.5E-07 63.6 7.4 78 300-384 409-490 (548)
90 PTZ00294 glycerol kinase-like 95.1 0.052 1.1E-06 62.2 7.8 51 333-384 407-457 (504)
91 KOG2517 Ribulose kinase and re 95.1 0.24 5.3E-06 55.2 12.5 70 311-384 396-465 (516)
92 PRK10854 exopolyphosphatase; P 95.1 0.56 1.2E-05 53.7 16.1 76 155-239 100-176 (513)
93 PRK10640 rhaB rhamnulokinase; 95.0 0.095 2.1E-06 59.5 9.5 81 300-385 345-426 (471)
94 KOG2531 Sugar (pentulose and h 94.9 0.07 1.5E-06 57.3 7.4 55 325-380 435-489 (545)
95 PRK10939 autoinducer-2 (AI-2) 94.8 0.099 2.2E-06 60.2 9.0 52 332-384 409-460 (520)
96 PRK11031 guanosine pentaphosph 94.7 0.7 1.5E-05 52.7 15.5 77 154-239 94-171 (496)
97 COG1548 Predicted transcriptio 94.6 0.16 3.5E-06 50.6 8.5 73 123-213 76-148 (330)
98 PRK05082 N-acetylmannosamine k 94.4 1.7 3.8E-05 45.8 16.7 48 332-379 233-287 (291)
99 PRK09698 D-allose kinase; Prov 94.2 7.6 0.00017 41.1 21.4 43 164-212 104-146 (302)
100 PRK09557 fructokinase; Reviewe 94.1 2.8 6E-05 44.5 17.7 44 164-212 96-139 (301)
101 PF01968 Hydantoinase_A: Hydan 94.1 0.16 3.5E-06 53.5 8.0 64 310-376 219-283 (290)
102 KOG0681 Actin-related protein 93.7 0.52 1.1E-05 51.9 10.7 99 139-246 117-216 (645)
103 COG0248 GppA Exopolyphosphatas 93.6 0.5 1.1E-05 53.2 11.1 57 154-213 91-147 (492)
104 PF13941 MutL: MutL protein 92.7 1.6 3.6E-05 48.5 13.2 42 3-51 2-45 (457)
105 PF02541 Ppx-GppA: Ppx/GppA ph 92.7 0.32 7E-06 51.2 7.6 74 157-239 77-151 (285)
106 PTZ00297 pantothenate kinase; 92.5 14 0.00031 47.5 22.7 72 305-378 1365-1444(1452)
107 PTZ00288 glucokinase 1; Provis 92.5 2.2 4.7E-05 47.1 13.7 20 2-21 27-46 (405)
108 COG1940 NagC Transcriptional r 92.2 8.2 0.00018 41.2 17.8 38 164-205 106-143 (314)
109 smart00842 FtsA Cell division 92.1 1.9 4.2E-05 42.1 11.7 30 152-181 157-186 (187)
110 PF07318 DUF1464: Protein of u 91.8 2.8 6E-05 44.5 12.8 53 331-384 259-319 (343)
111 PLN02666 5-oxoprolinase 89.9 3.5 7.5E-05 52.0 13.4 76 299-377 454-531 (1275)
112 PTZ00009 heat shock 70 kDa pro 89.5 2.5 5.4E-05 50.1 11.4 47 683-741 563-609 (653)
113 TIGR03706 exo_poly_only exopol 89.3 1.9 4.2E-05 45.7 9.5 109 120-238 55-163 (300)
114 COG2192 Predicted carbamoyl tr 88.9 46 0.001 37.6 22.2 81 298-382 255-337 (555)
115 PRK09585 anmK anhydro-N-acetyl 88.8 4.5 9.8E-05 43.8 11.7 71 307-380 264-338 (365)
116 PRK14878 UGMP family protein; 87.9 29 0.00062 37.2 17.3 53 315-372 229-287 (323)
117 TIGR03723 bact_gcp putative gl 87.6 21 0.00045 38.1 15.9 56 315-375 247-308 (314)
118 KOG0681 Actin-related protein 87.2 0.66 1.4E-05 51.1 4.2 66 315-380 539-614 (645)
119 PRK13310 N-acetyl-D-glucosamin 87.1 44 0.00095 35.3 23.3 45 163-212 95-139 (303)
120 PRK13411 molecular chaperone D 86.9 5.1 0.00011 47.5 11.9 47 682-741 550-596 (653)
121 smart00732 YqgFc Likely ribonu 86.7 0.59 1.3E-05 40.2 3.0 22 1-22 1-22 (99)
122 PRK00290 dnaK molecular chaper 86.6 4.5 9.7E-05 47.8 11.2 47 682-743 548-595 (627)
123 COG0554 GlpK Glycerol kinase [ 84.8 2.8 6.1E-05 46.1 7.5 83 299-385 371-454 (499)
124 PF03652 UPF0081: Uncharacteri 84.8 0.97 2.1E-05 41.6 3.5 22 1-22 1-22 (135)
125 COG5026 Hexokinase [Carbohydra 84.5 5.7 0.00012 43.2 9.4 18 2-19 76-93 (466)
126 PRK09605 bifunctional UGMP fam 83.9 90 0.002 36.1 24.8 63 315-382 233-301 (535)
127 TIGR02350 prok_dnaK chaperone 83.9 7.4 0.00016 45.7 11.2 45 682-741 546-590 (595)
128 COG2377 Predicted molecular ch 81.1 17 0.00037 38.9 11.3 166 193-381 161-344 (371)
129 PLN02920 pantothenate kinase 1 80.9 36 0.00077 37.1 13.8 48 332-379 297-351 (398)
130 TIGR03281 methan_mark_12 putat 80.5 6.9 0.00015 40.7 7.9 174 172-384 129-315 (326)
131 KOG0101 Molecular chaperones H 78.7 6.1 0.00013 45.4 7.6 49 683-743 563-612 (620)
132 KOG0104 Molecular chaperones G 78.4 17 0.00036 42.3 10.7 81 650-741 648-732 (902)
133 PTZ00340 O-sialoglycoprotein e 77.7 1.1E+02 0.0023 33.1 20.3 40 312-356 248-287 (345)
134 PTZ00400 DnaK-type molecular c 77.5 20 0.00043 42.6 12.0 45 682-741 589-633 (663)
135 CHL00094 dnaK heat shock prote 77.2 13 0.00029 43.7 10.4 44 683-741 551-594 (621)
136 PLN02939 transferase, transfer 76.6 1.3E+02 0.0029 36.9 18.1 179 555-733 237-426 (977)
137 COG0145 HyuA N-methylhydantoin 75.8 3.2 7E-05 48.7 4.6 42 168-213 255-296 (674)
138 PF00370 FGGY_N: FGGY family o 75.4 2.6 5.6E-05 43.2 3.4 20 3-22 2-21 (245)
139 PF03702 UPF0075: Uncharacteri 75.4 8.1 0.00018 41.9 7.2 71 305-380 260-337 (364)
140 COG2441 Predicted butyrate kin 74.8 27 0.00059 35.7 10.0 48 195-245 163-214 (374)
141 COG0533 QRI7 Metal-dependent p 74.4 15 0.00033 39.0 8.6 53 299-356 229-285 (342)
142 PRK00109 Holliday junction res 74.2 3 6.6E-05 38.5 3.1 22 1-22 4-25 (138)
143 PLN02362 hexokinase 73.6 15 0.00032 41.8 8.9 35 151-185 205-241 (509)
144 COG0816 Predicted endonuclease 72.8 3.5 7.7E-05 38.0 3.2 22 1-22 2-23 (141)
145 PLN03184 chloroplast Hsp70; Pr 71.8 53 0.0012 39.1 13.6 44 683-741 588-631 (673)
146 PRK02224 chromosome segregatio 71.6 2.6E+02 0.0056 34.6 20.7 116 554-672 145-260 (880)
147 PRK00976 hypothetical protein; 70.5 26 0.00057 37.2 9.3 51 332-384 263-315 (326)
148 COG4012 Uncharacterized protei 70.2 1.3E+02 0.0029 30.7 17.7 89 145-247 186-277 (342)
149 cd00529 RuvC_resolvase Hollida 68.8 60 0.0013 30.5 10.7 142 197-375 2-149 (154)
150 PF10168 Nup88: Nuclear pore c 68.6 2.1E+02 0.0045 34.4 17.3 12 140-151 107-118 (717)
151 PRK07058 acetate kinase; Provi 68.4 32 0.00069 37.6 9.7 47 307-357 297-344 (396)
152 PLN02405 hexokinase 68.3 33 0.0007 39.0 10.1 58 150-214 204-263 (497)
153 PF02543 CmcH_NodU: Carbamoylt 67.8 14 0.0003 40.2 7.0 81 298-383 132-216 (360)
154 PTZ00107 hexokinase; Provision 67.8 20 0.00043 40.4 8.3 38 149-186 192-231 (464)
155 PF08735 DUF1786: Putative pyr 67.0 66 0.0014 32.9 11.0 93 135-235 111-205 (254)
156 TIGR00634 recN DNA repair prot 66.4 2.6E+02 0.0056 32.6 18.6 16 612-627 225-240 (563)
157 TIGR00143 hypF [NiFe] hydrogen 66.2 13 0.00027 44.4 6.7 48 332-379 658-711 (711)
158 PLN02914 hexokinase 66.1 39 0.00084 38.3 10.2 58 150-214 204-263 (490)
159 cd06007 R3H_DEXH_helicase R3H 65.6 17 0.00037 28.0 5.1 29 140-168 16-44 (59)
160 PRK03011 butyrate kinase; Prov 65.4 23 0.0005 38.5 8.1 45 332-376 295-343 (358)
161 PTZ00294 glycerol kinase-like 64.8 5.1 0.00011 45.9 3.1 20 3-22 4-23 (504)
162 PF00349 Hexokinase_1: Hexokin 63.9 20 0.00044 35.5 6.8 53 193-247 61-117 (206)
163 KOG1385 Nucleoside phosphatase 63.8 20 0.00044 38.8 6.9 77 111-213 152-231 (453)
164 PF00012 HSP70: Hsp70 protein; 62.6 54 0.0012 38.5 11.3 67 661-741 529-597 (602)
165 KOG1656 Protein involved in gl 62.2 1.6E+02 0.0035 28.7 20.8 130 634-766 70-212 (221)
166 TIGR00329 gcp_kae1 metallohydr 61.8 2.2E+02 0.0047 30.2 14.9 39 313-356 244-282 (305)
167 KOG0964 Structural maintenance 61.8 3.7E+02 0.0081 32.8 17.7 49 687-741 328-376 (1200)
168 TIGR03722 arch_KAE1 universal 61.7 2.3E+02 0.0049 30.3 19.3 52 317-373 232-289 (322)
169 cd02640 R3H_NRF R3H domain of 60.1 26 0.00057 27.1 5.3 30 139-168 16-45 (60)
170 PF06008 Laminin_I: Laminin Do 59.4 2.2E+02 0.0048 29.4 15.5 93 607-705 151-252 (264)
171 PRK10939 autoinducer-2 (AI-2) 59.3 7.2 0.00016 44.9 3.0 20 3-22 5-24 (520)
172 TIGR03123 one_C_unchar_1 proba 59.3 6.4 0.00014 41.8 2.3 19 195-213 128-146 (318)
173 PRK05183 hscA chaperone protei 58.6 95 0.0021 36.6 12.2 44 683-741 553-596 (616)
174 PF14450 FtsA: Cell division p 58.1 11 0.00023 33.9 3.3 20 3-22 1-20 (120)
175 PF11593 Med3: Mediator comple 57.0 54 0.0012 35.0 8.5 50 617-668 9-58 (379)
176 TIGR01991 HscA Fe-S protein as 57.0 1.1E+02 0.0024 36.0 12.3 44 683-741 537-580 (599)
177 KOG1369 Hexokinase [Carbohydra 56.5 29 0.00062 38.8 6.8 63 146-215 186-251 (474)
178 PLN02295 glycerol kinase 56.5 8.5 0.00018 44.3 3.0 20 3-22 2-21 (512)
179 TIGR01315 5C_CHO_kinase FGGY-f 56.3 8.7 0.00019 44.5 3.0 20 3-22 2-21 (541)
180 TIGR01234 L-ribulokinase L-rib 55.6 9.9 0.00021 44.0 3.4 21 2-22 2-23 (536)
181 PRK00039 ruvC Holliday junctio 54.6 11 0.00025 35.8 3.0 37 1-38 2-38 (164)
182 KOG2708 Predicted metalloprote 54.5 1.4E+02 0.003 29.8 10.3 42 310-356 237-278 (336)
183 TIGR02259 benz_CoA_red_A benzo 53.7 11 0.00024 40.9 3.0 21 2-22 3-23 (432)
184 PRK00047 glpK glycerol kinase; 53.2 10 0.00022 43.4 3.0 21 2-22 6-26 (498)
185 TIGR01311 glycerol_kin glycero 53.1 10 0.00022 43.3 3.0 21 2-22 2-22 (493)
186 COG1340 Uncharacterized archae 52.1 3E+02 0.0065 28.8 16.0 88 609-705 62-149 (294)
187 PLN02377 3-ketoacyl-CoA syntha 52.1 34 0.00074 38.9 6.7 67 304-370 165-235 (502)
188 PRK04863 mukB cell division pr 51.6 7E+02 0.015 32.9 21.4 97 610-708 363-463 (1486)
189 COG4296 Uncharacterized protei 51.5 41 0.0009 30.2 5.6 23 620-642 90-112 (156)
190 PRK13410 molecular chaperone D 51.4 1.6E+02 0.0034 35.1 12.5 22 684-705 556-577 (668)
191 PF03630 Fumble: Fumble ; Int 50.9 2.4E+02 0.0052 30.4 12.6 46 332-377 287-339 (341)
192 PRK13321 pantothenate kinase; 50.9 14 0.00031 38.0 3.3 20 3-22 2-21 (256)
193 COG2971 Predicted N-acetylgluc 50.6 3.2E+02 0.007 28.7 17.5 64 310-380 227-291 (301)
194 PRK13318 pantothenate kinase; 50.5 14 0.00031 38.1 3.2 20 3-22 2-21 (258)
195 PLN02596 hexokinase-like 50.0 63 0.0014 36.6 8.4 55 154-215 208-264 (490)
196 smart00787 Spc7 Spc7 kinetocho 49.8 3.5E+02 0.0075 28.8 16.1 16 684-699 268-283 (312)
197 KOG0994 Extracellular matrix g 49.2 3.2E+02 0.007 33.9 13.9 39 576-617 1462-1500(1758)
198 PRK04123 ribulokinase; Provisi 47.9 15 0.00033 42.5 3.3 20 3-22 5-25 (548)
199 PLN02902 pantothenate kinase 47.7 3.2E+02 0.0069 33.2 13.8 47 332-379 346-400 (876)
200 PF08317 Spc7: Spc7 kinetochor 46.7 3.9E+02 0.0085 28.6 18.7 16 684-699 273-288 (325)
201 KOG0994 Extracellular matrix g 46.3 5E+02 0.011 32.4 14.8 36 554-599 1507-1542(1758)
202 PHA02566 alt ADP-ribosyltransf 46.1 5.5E+02 0.012 30.1 16.2 140 579-739 330-476 (684)
203 PRK10869 recombination and rep 44.5 5.6E+02 0.012 29.7 18.3 81 560-645 246-330 (553)
204 PTZ00186 heat shock 70 kDa pre 44.3 2E+02 0.0043 34.2 11.8 46 683-741 575-620 (657)
205 COG1196 Smc Chromosome segrega 43.2 4.6E+02 0.0099 33.7 15.6 75 554-628 151-232 (1163)
206 KOG0517 Beta-spectrin [Cytoske 42.4 8E+02 0.017 32.6 16.2 136 610-745 852-1022(2473)
207 PLN03170 chalcone synthase; Pr 42.3 70 0.0015 35.4 7.3 51 309-359 104-155 (401)
208 cd02641 R3H_Smubp-2_like R3H d 42.2 67 0.0015 24.9 5.0 29 140-168 17-45 (60)
209 PLN02669 xylulokinase 42.0 20 0.00043 41.6 3.0 21 2-22 9-29 (556)
210 KOG0678 Actin-related protein 41.8 3.2E+02 0.007 29.0 11.1 98 140-244 108-208 (415)
211 PLN03173 chalcone synthase; Pr 41.7 74 0.0016 35.1 7.3 50 310-359 101-151 (391)
212 cd00529 RuvC_resolvase Hollida 41.7 22 0.00049 33.4 2.8 17 3-19 2-18 (154)
213 TIGR00250 RNAse_H_YqgF RNAse H 41.5 17 0.00038 33.1 2.0 19 4-22 1-19 (130)
214 PF11172 DUF2959: Protein of u 41.4 3.6E+02 0.0077 26.5 10.7 23 689-711 142-164 (201)
215 cd02639 R3H_RRM R3H domain of 41.2 64 0.0014 25.0 4.7 30 139-168 16-45 (60)
216 COG3426 Butyrate kinase [Energ 40.6 79 0.0017 32.6 6.5 47 329-375 293-343 (358)
217 PRK01433 hscA chaperone protei 40.5 2.3E+02 0.005 33.2 11.5 24 682-705 530-553 (595)
218 TIGR02168 SMC_prok_B chromosom 40.3 8.8E+02 0.019 30.8 18.0 46 554-599 151-196 (1179)
219 PF00480 ROK: ROK family; Int 40.3 1E+02 0.0022 29.4 7.3 88 114-212 31-134 (179)
220 TIGR00634 recN DNA repair prot 40.1 6.6E+02 0.014 29.2 18.3 113 581-705 276-390 (563)
221 COG1521 Pantothenate kinase ty 39.8 1.6E+02 0.0036 30.1 8.8 118 174-345 108-225 (251)
222 PF14574 DUF4445: Domain of un 39.5 1.4E+02 0.0029 33.2 8.7 54 304-357 55-108 (412)
223 KOG0996 Structural maintenance 39.2 8.9E+02 0.019 30.5 19.5 21 554-574 774-794 (1293)
224 PRK03918 chromosome segregatio 38.6 8E+02 0.017 30.2 16.6 42 557-598 144-185 (880)
225 cd02646 R3H_G-patch R3H domain 38.5 68 0.0015 24.5 4.5 40 126-168 4-43 (58)
226 PF09763 Sec3_C: Exocyst compl 38.4 7.7E+02 0.017 29.6 16.3 113 612-737 40-164 (701)
227 PRK03918 chromosome segregatio 38.3 8.5E+02 0.018 30.0 20.6 13 336-348 26-40 (880)
228 PLN03172 chalcone synthase fam 38.1 82 0.0018 34.8 6.9 52 308-359 99-151 (393)
229 PLN02854 3-ketoacyl-CoA syntha 37.5 76 0.0016 36.3 6.6 54 306-359 183-237 (521)
230 PF02801 Ketoacyl-synt_C: Beta 37.1 36 0.00078 30.3 3.3 45 313-357 25-71 (119)
231 PF07106 TBPIP: Tat binding pr 37.0 3.5E+02 0.0075 25.7 10.3 91 604-699 67-157 (169)
232 COG0497 RecN ATPase involved i 37.0 7.1E+02 0.015 28.8 22.0 76 554-629 150-238 (557)
233 PF15043 CNRIP1: CB1 cannabino 36.7 3.7E+02 0.008 25.4 9.7 71 421-491 29-117 (161)
234 TIGR03185 DNA_S_dndD DNA sulfu 36.4 8E+02 0.017 29.1 17.8 68 554-625 369-437 (650)
235 PRK00409 recombination and DNA 35.6 5.1E+02 0.011 31.6 13.5 37 554-590 498-535 (782)
236 PRK00292 glk glucokinase; Prov 35.3 34 0.00074 36.5 3.3 50 162-212 88-144 (316)
237 PRK04863 mukB cell division pr 34.9 1.2E+03 0.026 30.8 21.5 18 610-627 322-339 (1486)
238 TIGR02169 SMC_prok_A chromosom 34.5 9.1E+02 0.02 30.7 16.7 46 554-599 149-194 (1164)
239 PF04848 Pox_A22: Poxvirus A22 34.4 44 0.00096 31.0 3.4 21 1-21 1-21 (143)
240 KOG0103 Molecular chaperones H 34.0 1.3E+02 0.0028 35.1 7.6 66 580-654 650-725 (727)
241 PLN03168 chalcone synthase; Pr 33.7 97 0.0021 34.2 6.6 55 305-359 95-150 (389)
242 TIGR03545 conserved hypothetic 33.1 7.2E+02 0.016 28.9 13.6 12 395-406 52-63 (555)
243 KOG4360 Uncharacterized coiled 33.0 7.6E+02 0.017 27.9 13.2 43 686-728 274-316 (596)
244 PRK13331 pantothenate kinase; 32.9 40 0.00088 34.5 3.2 22 1-22 7-28 (251)
245 PF00349 Hexokinase_1: Hexokin 32.9 22 0.00048 35.3 1.3 35 150-184 167-204 (206)
246 PF06840 DUF1241: Protein of u 32.9 3.4E+02 0.0075 25.5 8.9 35 643-679 12-46 (154)
247 PRK12440 acetate kinase; Revie 32.8 3.5E+02 0.0076 29.8 10.4 46 308-357 300-346 (397)
248 PF05378 Hydant_A_N: Hydantoin 32.5 51 0.0011 31.8 3.7 18 4-21 2-19 (176)
249 KOG1369 Hexokinase [Carbohydra 32.1 1.7E+02 0.0038 32.9 8.1 27 192-218 83-109 (474)
250 PF00435 Spectrin: Spectrin re 31.5 3E+02 0.0065 22.7 11.6 44 612-655 11-54 (105)
251 PRK13326 pantothenate kinase; 31.3 44 0.00095 34.6 3.2 21 2-22 7-27 (262)
252 PRK04778 septation ring format 31.0 9E+02 0.02 28.1 19.4 164 557-740 118-294 (569)
253 COG5026 Hexokinase [Carbohydra 30.9 54 0.0012 36.0 3.8 31 192-222 72-103 (466)
254 TIGR01069 mutS2 MutS2 family p 30.8 6.4E+02 0.014 30.7 13.3 37 554-590 493-530 (771)
255 PF08006 DUF1700: Protein of u 30.6 1.5E+02 0.0032 28.7 6.7 57 589-653 5-62 (181)
256 PF11802 CENP-K: Centromere-as 30.5 6.2E+02 0.014 26.1 13.4 39 608-648 109-147 (268)
257 KOG0797 Actin-related protein 29.8 16 0.00035 40.4 -0.2 50 333-382 527-591 (618)
258 PF06160 EzrA: Septation ring 29.5 9.5E+02 0.021 27.9 19.8 119 556-677 113-240 (560)
259 PF00871 Acetate_kinase: Aceto 29.4 2.5E+02 0.0055 30.9 8.8 47 308-357 299-346 (388)
260 COG4012 Uncharacterized protei 28.6 1.7E+02 0.0036 30.0 6.5 72 196-274 2-96 (342)
261 PF15066 CAGE1: Cancer-associa 28.6 8.6E+02 0.019 27.1 15.8 115 577-699 403-522 (527)
262 PLN02192 3-ketoacyl-CoA syntha 28.4 1.5E+02 0.0034 33.7 7.1 56 304-359 169-225 (511)
263 PF05537 DUF759: Borrelia burg 28.1 8.3E+02 0.018 26.8 11.9 57 684-741 351-409 (431)
264 TIGR02707 butyr_kinase butyrat 28.1 1.6E+02 0.0035 31.9 7.0 44 332-375 293-340 (351)
265 COG3894 Uncharacterized metal- 28.0 1.7E+02 0.0037 32.8 6.9 47 194-240 163-210 (614)
266 PF06637 PV-1: PV-1 protein (P 27.6 8.1E+02 0.018 26.5 12.7 12 610-621 264-275 (442)
267 PF02075 RuvC: Crossover junct 27.3 37 0.00081 31.8 1.7 35 3-38 1-35 (149)
268 PF09286 Pro-kuma_activ: Pro-k 27.2 81 0.0017 29.1 4.0 47 584-630 26-76 (143)
269 PF15290 Syntaphilin: Golgi-lo 27.1 7.2E+02 0.016 25.7 11.6 20 609-628 89-109 (305)
270 PRK13324 pantothenate kinase; 27.0 58 0.0013 33.6 3.2 20 3-22 2-21 (258)
271 TIGR01312 XylB D-xylulose kina 26.9 35 0.00077 38.7 1.8 19 4-22 1-19 (481)
272 PRK13320 pantothenate kinase; 26.7 61 0.0013 33.2 3.3 21 2-22 3-23 (244)
273 TIGR01319 glmL_fam conserved h 26.7 35 0.00077 37.9 1.6 17 196-212 250-266 (463)
274 KOG2517 Ribulose kinase and re 26.6 52 0.0011 37.2 2.9 17 3-19 8-24 (516)
275 PF08580 KAR9: Yeast cortical 26.4 8.1E+02 0.018 29.3 12.8 43 688-730 131-174 (683)
276 PTZ00432 falcilysin; Provision 26.3 6.8E+02 0.015 32.0 13.0 46 682-730 596-641 (1119)
277 KOG0517 Beta-spectrin [Cytoske 26.3 1.7E+03 0.037 29.9 16.5 102 608-709 949-1079(2473)
278 PF12128 DUF3584: Protein of u 26.2 1.5E+03 0.033 29.2 19.0 53 608-660 742-799 (1201)
279 TIGR02627 rhamnulo_kin rhamnul 26.2 33 0.00072 38.7 1.4 18 4-21 1-18 (454)
280 PF01548 DEDD_Tnp_IS110: Trans 26.0 89 0.0019 28.6 4.1 20 3-22 1-20 (144)
281 KOG0804 Cytoplasmic Zn-finger 25.8 9.5E+02 0.021 26.7 12.9 32 632-663 375-406 (493)
282 PRK07515 3-oxoacyl-(acyl carri 25.4 68 0.0015 35.1 3.6 47 309-357 267-313 (372)
283 PF01150 GDA1_CD39: GDA1/CD39 25.0 76 0.0016 35.6 4.0 21 194-214 163-183 (434)
284 TIGR03545 conserved hypothetic 25.0 6.4E+02 0.014 29.3 11.4 68 582-654 164-231 (555)
285 KOG0250 DNA repair protein RAD 24.8 1.4E+03 0.031 28.5 17.9 159 557-740 234-413 (1074)
286 PRK00180 acetate kinase A/prop 24.6 1.5E+02 0.0034 32.6 6.1 47 308-357 302-349 (402)
287 PRK11166 chemotaxis regulator 24.1 6.8E+02 0.015 25.0 9.8 63 644-716 83-145 (214)
288 KOG3133 40 kDa farnesylated pr 23.9 5.8E+02 0.013 26.2 9.3 62 585-653 142-203 (267)
289 PF07851 TMPIT: TMPIT-like pro 23.6 8.7E+02 0.019 26.0 11.1 75 634-716 20-94 (330)
290 PLN02914 hexokinase 23.4 2E+02 0.0043 32.7 6.8 24 193-216 93-116 (490)
291 smart00657 RPOL4c DNA-directed 23.3 5E+02 0.011 23.1 8.1 36 659-699 79-114 (118)
292 KOG1794 N-Acetylglucosamine ki 23.1 2.2E+02 0.0047 29.7 6.3 50 334-383 265-319 (336)
293 cd00176 SPEC Spectrin repeats, 23.0 6.6E+02 0.014 23.9 14.4 35 699-737 118-152 (213)
294 COG1940 NagC Transcriptional r 22.8 3.3E+02 0.0073 28.7 8.3 52 193-244 4-55 (314)
295 COG0443 DnaK Molecular chapero 22.7 8E+02 0.017 28.7 11.8 43 683-741 531-573 (579)
296 PLN00415 3-ketoacyl-CoA syntha 22.6 1.9E+02 0.0042 32.5 6.4 45 315-359 138-183 (466)
297 COG4942 Membrane-bound metallo 22.2 1.1E+03 0.024 26.2 19.1 44 612-655 111-154 (420)
298 PRK12879 3-oxoacyl-(acyl carri 22.1 1.8E+02 0.0039 30.9 6.1 46 310-358 222-267 (325)
299 TIGR01319 glmL_fam conserved h 22.1 66 0.0014 35.9 2.6 16 6-21 1-16 (463)
300 COG0533 QRI7 Metal-dependent p 22.0 2E+02 0.0042 30.9 6.0 45 305-349 44-88 (342)
301 PF11458 Mistic: Membrane-inte 21.9 2.2E+02 0.0047 23.0 4.6 67 606-672 3-69 (84)
302 PF13941 MutL: MutL protein 21.9 2.2E+02 0.0047 32.1 6.6 47 197-243 2-49 (457)
303 KOG1029 Endocytic adaptor prot 21.2 1.5E+03 0.032 27.3 19.1 16 611-626 418-433 (1118)
304 PF08429 PLU-1: PLU-1-like pro 21.2 1E+03 0.022 25.3 16.6 47 554-600 82-128 (335)
305 PLN02362 hexokinase 21.1 2.6E+02 0.0056 32.0 7.2 25 193-217 93-117 (509)
306 PF09731 Mitofilin: Mitochondr 21.1 1.3E+03 0.029 26.7 17.6 27 719-745 464-491 (582)
307 PRK12408 glucokinase; Provisio 21.0 63 0.0014 34.8 2.2 19 3-21 18-36 (336)
308 KOG4001 Axonemal dynein light 20.6 6.2E+02 0.013 24.7 8.3 46 579-626 196-241 (259)
309 KOG0979 Structural maintenance 20.5 1.7E+03 0.037 27.7 20.3 35 696-730 341-375 (1072)
No 1
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.7e-125 Score=1007.52 Aligned_cols=723 Identities=49% Similarity=0.780 Sum_probs=680.9
Q ss_pred CeEEEEEcCccceEEEEEEcCCceEEEeCCCCCccceEEEEeeCCceeecHHHHhhhhhCCcchHhHHHHhcCCCCCChH
Q 004210 1 MSVVGFDIGNENCVIAAVKQGGMLDVLLNDESKRETPTVVSFSEKQRFLGSAGAASAMMNPKSTISQVKRLLGRKFREDD 80 (768)
Q Consensus 1 m~viGID~Gtt~s~va~~~~~~~~~i~~n~~~~r~~Ps~v~~~~~~~~~G~~A~~~~~~~p~~~~~~~k~llg~~~~~~~ 80 (768)
|+|+|||||..+|.+|+.+.++ ++++.|+.|+|.||++|+|.+++|++|.+|.++..+|+.+++..+||++|+.++||.
T Consensus 1 msvvG~D~Gn~nc~iavAr~~g-Ie~i~nd~Snr~TPa~vsfg~K~R~~G~aak~~~~~n~kntv~~~KRl~Gr~f~dP~ 79 (727)
T KOG0103|consen 1 MSVVGFDLGNENCYIAVARQGG-IEVVANDYSNRETPAIVSFGPKNRFIGVAAKNQQTTNVKNTVSNFKRLIGRKFSDPE 79 (727)
T ss_pred CCceeeeccccceeeeeeccCC-ceeeeeccccccCcceeeeccccceeeeccccceeecccccchhhhhhhccccCChH
Confidence 8999999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhccCCceeeecCCCCEEEEEEecCceeEecHHHHHHHHHHHHHHHHHhhccCCCCeEEEEeCCCCCHHHHHHHHHH
Q 004210 81 VQKDLKLFPFETCESHDGGILIMLEYLGETHKFTPVQILGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDVQRRAYLDA 160 (768)
Q Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~el~a~~L~~l~~~a~~~~~~~~~~~VitVP~~~~~~qr~~l~~A 160 (768)
++.+.+.+|+.++..+||.+++.+.|.|+.+.|+++++++|+|.+++..++..+..++.+|||+||+||++.||+++.+|
T Consensus 80 ~q~~~~~~~~~vv~~~dg~vgi~v~ylge~~~ft~~Qv~Am~l~klk~~ae~~l~~~v~DcvIavP~~FTd~qRravldA 159 (727)
T KOG0103|consen 80 VQREIKSLPRSVVQLKDGDVGIKVEYLGEKHPFTPEQVLAMLLTKLKATAEKNLKSPVSDCVIAVPSYFTDSQRRAVLDA 159 (727)
T ss_pred hhhcccccchheeecCCCCcceeehcccCCCCCChHHHHHHHHHHHHHHHHHhcCCCCCCeeEeccccccHHHHHHHHhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCcceEeccchHHHHHHhhhcccCCC--CCCCcEEEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCCchhhHHHH
Q 004210 161 ATIAGLKPLRLMHDCTATALGYGIYKTDFS--NVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEV 238 (768)
Q Consensus 161 a~~AGl~~~~li~Ep~Aaal~y~~~~~~~~--~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~d~~ 238 (768)
|++|||++++|++|.+|+|++||++++++| ..++.+++++|||++++.+|++.|..|.++++++.+|.++||++||..
T Consensus 160 A~iagLn~lrLmnd~TA~Al~ygiyKtDLP~~~ekpr~v~fvD~GHS~~q~si~aF~kG~lkvl~ta~D~~lGgr~fDe~ 239 (727)
T KOG0103|consen 160 ARIAGLNPLRLMNDTTATALAYGIYKTDLPENEEKPRNVVFVDIGHSSYQVSIAAFTKGKLKVLATAFDRKLGGRDFDEA 239 (727)
T ss_pred HhhcCccceeeeecchHhHhhcccccccCCCcccCcceEEEEecccccceeeeeeeccCcceeeeeecccccccchHHHH
Confidence 999999999999999999999999999997 566899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcccCccCChHHHHHHHHHHHHHhhhccCCCcccEEEeccccCcceEEEecHHHHHHHHHHHHHHHHHH
Q 004210 239 LSSYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANAEAPLNIECLMNEKDVKGFIRREEFEKLSSSLLERMRIP 318 (768)
Q Consensus 239 l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~i~i~~l~~~~d~~~~itr~~fe~~~~~~~~~i~~~ 318 (768)
|.+||+.+|+.+|++++..|+++..||+.+||++|+.||+|...+++|+|++++.|.+..|+|++||++|.|+++|+..+
T Consensus 240 L~~hfa~efk~kykidv~sn~kA~lRL~~~~EKlKK~lSAN~~~plNIEcfM~d~dvs~~i~ReEfEel~~plL~rv~~p 319 (727)
T KOG0103|consen 240 LIDHFAKEFKTKYKIDVRSNAKAKLRLLAECEKLKKVLSANTELPLNIECFMNDKDVSSKIKREEFEELSAPLLERVEVP 319 (727)
T ss_pred HHHHHHHHhccccccchhhchhHHHHHHHHHHHHHHHhhcCcCCCcchhheeecchhhhhccHHHHHHHHHHHHHhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCcCEEEEecCCCChHHHHHHHHhhcCCCCCCcCChhhHHHhHHHHHhhHhcCCccccceEEeeccce
Q 004210 319 CQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQCAMLSPQYCVREFEVQDSFPF 398 (768)
Q Consensus 319 i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~Gaa~~a~~ls~~~~~~~~~~~d~~~~ 398 (768)
+.++|+++++..+||+.|++|||+||+|.|+++|+++||+++.+++|.|||||+|||++||++||.||++.|.++|+.||
T Consensus 320 ~~~~l~d~~l~~edi~~VEiVGg~sripaike~Is~~Fgke~s~TlN~dEavarG~ALqcAIlSP~frVRef~v~Di~py 399 (727)
T KOG0103|consen 320 LLKALADAKLKVEDIHAVEIVGGLSRIPAIKEMISDFFGKELSRTLNQDEAVARGAALQCAILSPTFRVREFSVEDIVPY 399 (727)
T ss_pred HHHHHHHhcCccccceeEEEecCcccchHHHHHHHHHhCCcccccccHHHHHHHhHHHHHHhcCccccceecceecccce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEecCCCcccceeEEEecCCCCCCceeEEEEeecCceEEEEEEeccccCCCCCCCcceeEEecCCCCCCC-CcceEE
Q 004210 399 SIGFSSEKGPICTFSNGVLLPKGQPFPSVKILTLHRSNGFQLQAFYADQNELPSVVSPQISSFMIGPFQTSHA-ETARVK 477 (768)
Q Consensus 399 ~i~i~~~~~~~~~~~~~~l~~~g~~~p~~k~~~f~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~-~~~~i~ 477 (768)
+|.+.|.....+......+||+|.++|.+|.+||++.++|++.+.|.+.+.+| .....|++|+++++.+... +..+++
T Consensus 400 sIs~~w~~~~ed~~~~~evF~~~~~~p~~K~lT~~Rk~~F~lea~yt~~~~lp-~~~~kI~~~~i~~v~~~~~ge~skVK 478 (727)
T KOG0103|consen 400 SISLRWVKQGEDGGSVTEVFPKGHPSPSVKLLTFNRKGPFTLEAKYTKVNKLP-YPKPKIEKWTITGVTPSEDGEFSKVK 478 (727)
T ss_pred eEEEEeccccccCCCceeeecCCCCCCCceEEEEEecCceEEEEEeccccccC-CCCCceeeEEecccccCcccccccee
Confidence 99999987655555668999999999999999999999999999999988887 7888999999999998755 678999
Q ss_pred EEEEEcCCccEEEEeeeeeeeeeecccccccccccccccccccCCCCCCCCCCcccccccccceeeeeeeecccCCCCCH
Q 004210 478 VRVHLDLDGVVRVQSASLIEEFVDDSVRRESRDAHLTLEEDAKSDHTPATAIDPEINRKGKVLKRLEIPVNENVNGGMTK 557 (768)
Q Consensus 478 v~~~~d~~Gil~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~i~~~~~~~ls~ 557 (768)
|++++|.+|++.|.++.++++.++++ +++... +.+.. +...+.. .+.+.|++.++..+++.....++|+.
T Consensus 479 vkvr~n~~Gi~~i~sA~~~e~~~vee-v~~~~~-----e~~~~--~~~~~~~--~~~~~k~kvk~~~L~~~~~~~~~l~~ 548 (727)
T KOG0103|consen 479 VKVRLNEHGIDTIESATLIEDIEVEE-VPEEPM-----EYDDA--AKMLERI--APAENKKKVKKVDLPIEAYTKGALIT 548 (727)
T ss_pred EEEEEcCccceeeecceeecccchhc-cccchh-----hhhcc--hhhhhhh--ccccccceeeeccccceeeeccccCH
Confidence 99999999999999999999877765 332110 00000 0000000 01112567888999998887678999
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHHHHHHHhhHhhccCCHHHHHHHHHHHHHHHHHHhhcCCCccHHHH
Q 004210 558 TELSEAVEKEHQLVQQDLKMERTKDRKNALESYVYEMRDKISNIYRSFATESEREGISRNLRDTEEWLYEDGDDESENVY 637 (768)
Q Consensus 558 ~e~~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~t~~e~~~l~~~l~~~~~WL~~~g~~a~~~~~ 637 (768)
.+++..++++.+|..+|+...++.+++|+||+|||+||++|.+.|.+|.++++|++|...|+++++|||++|++.++..|
T Consensus 549 ~~l~~~~e~E~~M~~qD~~~~Et~D~KNaleeyVY~~R~kl~~~y~~f~~~a~~e~~~~~l~~~E~wlyedGed~~k~~Y 628 (727)
T KOG0103|consen 549 DELELYIEKENKMILQDKLEKETVDAKNALEEYVYDMRDKLSDKYEDFITDAEREKLKKMLTDTEEWLYEDGEDQTKAVY 628 (727)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhccHHHHHHHHHHHHHHHhhhhhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 004210 638 AERLEDLKKLVDPIEGRYKDEEARAQATGALLKCAMDYRKVVEAHSLPSKVRDAVIDECSKAEEWLREKVTQQDSLPKDA 717 (768)
Q Consensus 638 ~~kl~~L~~~~~pi~~R~~e~~~rp~a~~~l~~~l~~~~~~~~~~~~~~ee~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~ 717 (768)
..||.+|+.+++ ..|+++.+.||++++.+.+.++.++..+ +.+..++...|++.+.|++.++.+|.+++++.
T Consensus 629 ~~kl~elk~~g~--~~r~~e~~~r~k~~d~~~~~i~~~r~~~------~~~~~k~~~~~~~a~kw~~~~~~~q~~~~~t~ 700 (727)
T KOG0103|consen 629 VAKLEELKKLGD--KKRFDENEERPKAFDELGKKIQEIRKAI------ESEMEKVLLEIEEAEKWLERKSNKQNKLSKTA 700 (727)
T ss_pred HHHHHHHHhhhh--hhhhhhhhhhhHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHhhhhhhhhcccCCC
Confidence 999999999999 9999999999999999999999999988 44899999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHHHhhhhc-CCC
Q 004210 718 DPILWSTEIKRKSEALDLTCKCIM-RSN 744 (768)
Q Consensus 718 dP~~~~~di~~k~~~l~~~~~~i~-kpk 744 (768)
+| +.+++++.+.+.|++.|.++. +||
T Consensus 701 ~p-v~~~e~~~~~~~l~~~~~~i~~~~k 727 (727)
T KOG0103|consen 701 DP-VPSSEIESEAKELNNTCSDIISKPK 727 (727)
T ss_pred CC-CchHHHHHhhhhhccccccccccCC
Confidence 99 999999999999999999999 876
No 2
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-123 Score=930.40 Aligned_cols=601 Identities=29% Similarity=0.524 Sum_probs=571.9
Q ss_pred eEEEEEcCccceEEEEEEcCCceEEEeCCCCCccceEEEEeeCCceeecHHHHhhhhhCCcchHhHHHHhcCCCCCChHH
Q 004210 2 SVVGFDIGNENCVIAAVKQGGMLDVLLNDESKRETPTVVSFSEKQRFLGSAGAASAMMNPKSTISQVKRLLGRKFREDDV 81 (768)
Q Consensus 2 ~viGID~Gtt~s~va~~~~~~~~~i~~n~~~~r~~Ps~v~~~~~~~~~G~~A~~~~~~~p~~~~~~~k~llg~~~~~~~~ 81 (768)
+|||||+|||||||+++++|. ++|+.|++|+|.+||+|+|.+++|++|++|+++...||.+++++.|||||+.++++.+
T Consensus 37 tvigIdLGTTYsCVgV~kNgr-vEIiANdQGNRItPSyVaFt~derLiGdAAKNQ~~~NPenTiFD~KRLIGr~~~d~~v 115 (663)
T KOG0100|consen 37 TVIGIDLGTTYSCVGVYKNGR-VEIIANDQGNRITPSYVAFTDDERLIGDAAKNQLTSNPENTIFDAKRLIGRKFNDKSV 115 (663)
T ss_pred eEEEEecCCceeeEEEEeCCe-EEEEecCCCCccccceeeeccchhhhhhHhhcccccCcccceechHHHhCcccCChhh
Confidence 589999999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhccCCceeeecCCCCEEEEEEec-CceeEecHHHHHHHHHHHHHHHHHhhccCCCCeEEEEeCCCCCHHHHHHHHHH
Q 004210 82 QKDLKLFPFETCESHDGGILIMLEYL-GETHKFTPVQILGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDVQRRAYLDA 160 (768)
Q Consensus 82 ~~~~~~~~~~~~~~~~g~~~~~v~~~-~~~~~~~~~el~a~~L~~l~~~a~~~~~~~~~~~VitVP~~~~~~qr~~l~~A 160 (768)
|.+++++||+++.. +|.+.++|... |+.+.|+|+++++|+|.++++.|+.++|..+.++|+|||+||++.||+++++|
T Consensus 116 q~Dik~~Pfkvv~k-~~kp~i~v~v~~g~~K~FtPeEiSaMiL~KMKe~AEayLGkkv~~AVvTvPAYFNDAQrQATKDA 194 (663)
T KOG0100|consen 116 QKDIKFLPFKVVNK-DGKPYIQVKVGGGETKVFTPEEISAMILTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKDA 194 (663)
T ss_pred hhhhhcCceEEEcC-CCCccEEEEccCCcccccCHHHHHHHHHHHHHHHHHHHhCCcccceEEecchhcchHHHhhhccc
Confidence 99999999999877 68889999877 66889999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCcceEeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCCchhhHHHHHH
Q 004210 161 ATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEVLS 240 (768)
Q Consensus 161 a~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~d~~l~ 240 (768)
..+|||+++++||||+|||++||+++. ....++||||+||||||+|++.+++|.|+|+++.||.+|||.|||++++
T Consensus 195 GtIAgLnV~RIiNePTaAAIAYGLDKk----~gEknilVfDLGGGTFDVSlLtIdnGVFeVlaTnGDThLGGEDFD~rvm 270 (663)
T KOG0100|consen 195 GTIAGLNVVRIINEPTAAAIAYGLDKK----DGEKNILVFDLGGGTFDVSLLTIDNGVFEVLATNGDTHLGGEDFDQRVM 270 (663)
T ss_pred ceeccceEEEeecCccHHHHHhccccc----CCcceEEEEEcCCceEEEEEEEEcCceEEEEecCCCcccCccchHHHHH
Confidence 999999999999999999999999886 4578999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcccCccCChHHHHHHHHHHHHHhhhccCCCcccEEEeccccCcceEEEecHHHHHHHHHHHHHHHHHHHH
Q 004210 241 SYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANAEAPLNIECLMNEKDVKGFIRREEFEKLSSSLLERMRIPCQ 320 (768)
Q Consensus 241 ~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~i~i~~l~~~~d~~~~itr~~fe~~~~~~~~~i~~~i~ 320 (768)
+||.+-++++++.|++.+.+++.+|+++||++|+.||+..++.+.|+++++|.||+-++||+.||++.-+++.....+++
T Consensus 271 ~~fiklykkK~gkDv~kdnkA~~KLrRe~EkAKRaLSsqhq~riEIeS~fdG~DfSEtLtRAkFEElNmDLFr~TlkPv~ 350 (663)
T KOG0100|consen 271 EYFIKLYKKKHGKDVRKDNKAVQKLRREVEKAKRALSSQHQVRIEIESLFDGVDFSETLTRAKFEELNMDLFRKTLKPVQ 350 (663)
T ss_pred HHHHHHHhhhcCCccchhhHHHHHHHHHHHHHHhhhccccceEEeeeeccccccccchhhhhHHHHhhhHHHHHhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCcCEEEEecCCCChHHHHHHHHhhc-CCCCCCcCChhhHHHhHHHHHhhHhcCCccccceEEeecccee
Q 004210 321 KALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLF-NREPGRTINASECVARGCALQCAMLSPQYCVREFEVQDSFPFS 399 (768)
Q Consensus 321 ~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~f-g~~v~~~~n~~eava~Gaa~~a~~ls~~~~~~~~~~~d~~~~~ 399 (768)
.+|+++++..++|+.|+||||++|||.||++|+++| |++.++.+|||||||+|||++|..||+.....++++.|++|.+
T Consensus 351 kvl~Ds~lkKsdideiVLVGGsTrIPKvQqllk~fF~GKepskGinPdEAVAYGAAVQaGvlsGee~t~divLLDv~pLt 430 (663)
T KOG0100|consen 351 KVLEDSDLKKSDIDEIVLVGGSTRIPKVQQLLKDFFNGKEPSKGINPDEAVAYGAAVQAGVLSGEEDTGDIVLLDVNPLT 430 (663)
T ss_pred HHHhhcCcccccCceEEEecCcccChhHHHHHHHHhCCCCccCCCChHHHHHhhhhhhhcccccccCcCcEEEEeecccc
Confidence 999999999999999999999999999999999999 7999999999999999999999999999889999999999999
Q ss_pred eEEEecCCCcccceeEEEecCCCCCCceeEEEEeec--CceEEEEEEeccccCCCCCCCcceeEEecCCCCCCCCcceEE
Q 004210 400 IGFSSEKGPICTFSNGVLLPKGQPFPSVKILTLHRS--NGFQLQAFYADQNELPSVVSPQISSFMIGPFQTSHAETARVK 477 (768)
Q Consensus 400 i~i~~~~~~~~~~~~~~l~~~g~~~p~~k~~~f~~~--~~~~i~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~i~ 477 (768)
+||++-+| .+..|||||+.+|++|+..|++. ++-++.+...++++....+|+.+|.|.++|+||+|.|.|+|+
T Consensus 431 lGIETvGG-----VMTklI~RNTviPTkKSQvFsTa~DnQ~tV~I~vyEGER~mtkdn~lLGkFdltGipPAPRGvpqIE 505 (663)
T KOG0100|consen 431 LGIETVGG-----VMTKLIPRNTVIPTKKSQVFSTAQDNQPTVTIQVYEGERPMTKDNHLLGKFDLTGIPPAPRGVPQIE 505 (663)
T ss_pred ceeeeecc-----eeeccccCCcccCccccceeeecccCCceEEEEEeeccccccccccccccccccCCCCCCCCCccEE
Confidence 99999998 89999999999999999888874 443444432344565679999999999999999999999999
Q ss_pred EEEEEcCCccEEEEeeeeeeeeeecccccccccccccccccccCCCCCCCCCCcccccccccceeeeeeeecccCCCCCH
Q 004210 478 VRVHLDLDGVVRVQSASLIEEFVDDSVRRESRDAHLTLEEDAKSDHTPATAIDPEINRKGKVLKRLEIPVNENVNGGMTK 557 (768)
Q Consensus 478 v~~~~d~~Gil~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~i~~~~~~~ls~ 557 (768)
|+|.+|.||+|+|++.+ |.++++..|+|++.. ++||+
T Consensus 506 VtFevDangiL~VsAeD------------------------------------------Kgtg~~~kitItNd~-~rLt~ 542 (663)
T KOG0100|consen 506 VTFEVDANGILQVSAED------------------------------------------KGTGKKEKITITNDK-GRLTP 542 (663)
T ss_pred EEEEEccCceEEEEeec------------------------------------------cCCCCcceEEEecCC-CCCCH
Confidence 99999999999999863 667788889999887 78999
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHHHHHHHhh--HhhccCCHHHHHHHHHHHHHHHHHHhhcCCCccHH
Q 004210 558 TELSEAVEKEHQLVQQDLKMERTKDRKNALESYVYEMRDKISN--IYRSFATESEREGISRNLRDTEEWLYEDGDDESEN 635 (768)
Q Consensus 558 ~e~~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~--~~~~~~t~~e~~~l~~~l~~~~~WL~~~g~~a~~~ 635 (768)
++|++|+...+++...|+..+++.++||+||+|.|+|++.+.+ .+...+++++++.+...+++..+||.++ .+|.++
T Consensus 543 EdIerMv~eAekFAeeDk~~KekieaRN~LE~YayslKnqi~dkekLg~Kl~~edKe~~e~av~e~~eWL~~n-~~a~~E 621 (663)
T KOG0100|consen 543 EDIERMVNEAEKFAEEDKKLKEKIEARNELESYAYSLKNQIGDKEKLGGKLSDEDKETIEDAVEEALEWLESN-QDASKE 621 (663)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHhhhccCchhHhcccCChhHHHHHHHHHHHHHHHHhhc-ccccHH
Confidence 9999999999999999999999999999999999999999975 4788999999999999999999999998 799999
Q ss_pred HHHHHHHHHHHhHhHHHHhhHh
Q 004210 636 VYAERLEDLKKLVDPIEGRYKD 657 (768)
Q Consensus 636 ~~~~kl~~L~~~~~pi~~R~~e 657 (768)
+|.+|+++|..+++||...+..
T Consensus 622 e~~ek~kele~vv~PiisklY~ 643 (663)
T KOG0100|consen 622 EFKEKKKELEAVVQPIISKLYG 643 (663)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999987765
No 3
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-108 Score=881.15 Aligned_cols=730 Identities=29% Similarity=0.453 Sum_probs=633.9
Q ss_pred eEEEEEcCccceEEEEEEcCCceEEEeCCCCCccceEEEEeeCCceeecHHHHhhhhhCCcchHhHHHHhcCCCCCChHH
Q 004210 2 SVVGFDIGNENCVIAAVKQGGMLDVLLNDESKRETPTVVSFSEKQRFLGSAGAASAMMNPKSTISQVKRLLGRKFREDDV 81 (768)
Q Consensus 2 ~viGID~Gtt~s~va~~~~~~~~~i~~n~~~~r~~Ps~v~~~~~~~~~G~~A~~~~~~~p~~~~~~~k~llg~~~~~~~~ 81 (768)
+|++||+||.|++||+++||.|++|++|..++|++|++|+|.+++|+||.+|.+.+.++|.+++.+++.|+|+...+|.+
T Consensus 23 AvmsVDlGse~~Kv~vVkPGvPmeIvLn~esrRKtp~~vafk~~eR~fg~~A~~ma~r~P~~~~~~l~~llgk~~~~~~v 102 (902)
T KOG0104|consen 23 AVMSVDLGSEWIKVAVVKPGVPMEIVLNKESRRKTPSIVAFKGGERIFGEAAASMATRFPQSTYRQLKDLLGKSLDDPTV 102 (902)
T ss_pred hheeeecccceeEEEEecCCCCeEEeechhhcccCcceEEecCCceehhhhhhhhhhcCcHHHHHHHHHHhCcccCCcHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhccCCce-eeecC-CCCEEEEEEecCceeEecHHHHHHHHHHHHHHHHHhhccCCCCeEEEEeCCCCCHHHHHHHHH
Q 004210 82 QKDLKLFPFE-TCESH-DGGILIMLEYLGETHKFTPVQILGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDVQRRAYLD 159 (768)
Q Consensus 82 ~~~~~~~~~~-~~~~~-~g~~~~~v~~~~~~~~~~~~el~a~~L~~l~~~a~~~~~~~~~~~VitVP~~~~~~qr~~l~~ 159 (768)
+.+.+.+|+. ++.++ ++.+.|.+. + ...|++|+++||+|.+.++.|+.+...++.++|||||.||++.||+++.+
T Consensus 103 ~ly~~~~p~~e~v~d~~rstV~F~i~--d-~~~ysvEellAMil~~a~~~ae~~a~~~Ikd~ViTVP~~F~qaeR~all~ 179 (902)
T KOG0104|consen 103 DLYQKRFPFFELVEDPQRSTVVFKIS--D-QEEYSVEELLAMILQYAKSLAEEYAKQPIKDMVITVPPFFNQAERRALLQ 179 (902)
T ss_pred HHHHhcCCceeecccCccceEEEEeC--C-ccccCHHHHHHHHHHHHHHHHHHHHhcchhheEEeCCcccCHHHHHHHHH
Confidence 9888866654 55554 566666654 3 46799999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCcceEeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEee-------C---CeEEEEEEeCCCC
Q 004210 160 AATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYE-------N---GHMKILSHAFDES 229 (768)
Q Consensus 160 Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~-------~---~~~~vl~~~~~~~ 229 (768)
||++||++++.||||.+|||+.||++++..+...+.+++|||||+|+|.++++.|. + ..++++++++|..
T Consensus 180 Aa~iagl~vLqLind~~a~Al~ygv~rRk~i~~~~q~~i~YDMGs~sT~Ativsy~~v~~k~~g~~~p~i~~~gvGfd~t 259 (902)
T KOG0104|consen 180 AAQIAGLNVLQLINDGTAVALNYGVFRRKEINETPQHYIFYDMGSGSTSATIVSYQLVKTKEQGGKQPQIQVLGVGFDRT 259 (902)
T ss_pred HHHhcCchhhhhhccchHHHhhhhhhccccCCCCceEEEEEecCCCceeEEEEEEEeeccccccCccceEEEEeeccCCc
Confidence 99999999999999999999999999887777889999999999999999999996 1 4799999999999
Q ss_pred CchhhHHHHHHHHHHHHHhhhccc--CccCChHHHHHHHHHHHHHhhhccCCCcccEEEeccccCcceEEEecHHHHHHH
Q 004210 230 LGGRDFDEVLSSYFAAQFKQQYDI--DVYTNVKASIRLRASCEKLKKVLSANAEAPLNIECLMNEKDVKGFIRREEFEKL 307 (768)
Q Consensus 230 lGG~~~d~~l~~~l~~~~~~~~~~--~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~i~i~~l~~~~d~~~~itr~~fe~~ 307 (768)
|||..|.++|.+||...|.++++. +++.|||+|+||.++|+++|..||+|.++.++|++|++|+||+.+|||++||++
T Consensus 260 LGG~e~~~rLr~~l~~~F~~~~k~~~dv~~nprAmaKl~keA~R~K~vLSANsea~aqIEsL~ddiDFr~kvTRe~fEel 339 (902)
T KOG0104|consen 260 LGGLEMTMRLRDHLANEFNEQHKTKKDVHTNPRAMAKLNKEAERLKQVLSANSEAFAQIESLIDDIDFRLKVTREEFEEL 339 (902)
T ss_pred cchHHHHHHHHHHHHHHHHHhcCCccccccCHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHhhccccccceeHHHHHHH
Confidence 999999999999999999998864 688999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCcCEEEEecCCCChHHHHHHHHhhcC-CCCCCcCChhhHHHhHHHHHhhHhcCCcc
Q 004210 308 SSSLLERMRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFN-REPGRTINASECVARGCALQCAMLSPQYC 386 (768)
Q Consensus 308 ~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~fg-~~v~~~~n~~eava~Gaa~~a~~ls~~~~ 386 (768)
|+++..++..||+++|..++++.++|+.|+|+||+||+|.||+.|.++.| .++..++|+|||+++||+++||.||..|+
T Consensus 340 c~Dl~~r~~~Pi~dAl~~a~l~ldeIn~ViL~Gg~TRVP~VQe~l~k~v~~~ei~knlNaDEA~vmGav~~aA~LSksFK 419 (902)
T KOG0104|consen 340 CADLEERIVEPINDALKKAQLSLDEINQVILFGGATRVPKVQETLIKAVGKEELGKNLNADEAAVMGAVYQAAHLSKSFK 419 (902)
T ss_pred HHHHHHhhhhhHHHHHHhcCCChhhhheeEEecCcccCchHHHHHHHHHhHHHHhcccChhHHHHHHHHHHHHhhccccc
Confidence 99999999999999999999999999999999999999999999999998 68999999999999999999999999999
Q ss_pred ccceEEeeccceeeEEEecCCCc---ccceeEEEecCCCCCCceeEEEEee-cCceEEEEEEeccccCCCCCCCcceeEE
Q 004210 387 VREFEVQDSFPFSIGFSSEKGPI---CTFSNGVLLPKGQPFPSVKILTLHR-SNGFQLQAFYADQNELPSVVSPQISSFM 462 (768)
Q Consensus 387 ~~~~~~~d~~~~~i~i~~~~~~~---~~~~~~~l~~~g~~~p~~k~~~f~~-~~~~~i~~~~~~~~~~~~~~~~~i~~~~ 462 (768)
+++|++.|.++|+|.+++.+.+. .++....+|++|.+||..++++|+. +.+|.+.+.|+.-+ ..+..|.
T Consensus 420 vKpf~V~D~~~yp~~v~f~~~~~i~~~k~~~~~lf~~~~~yPnk~vi~~~~ysddf~~~~n~~~~~-------~nl~~ve 492 (902)
T KOG0104|consen 420 VKPFNVVDASVYPYLVEFETEPGIHALKSVKRDLFARMSPYPNKKVITFTSYSDDFPFNINYGDLG-------QNLTTVE 492 (902)
T ss_pred ccceeeeecccccEEEEeccCCcccccchhHHHHHhcCCcCCCcceeeccccCCccccccchhhhc-------cCccEEE
Confidence 99999999999999999876522 2235567999999999999999987 55688888776421 2355899
Q ss_pred ecCCCCC----C---CCcceEEEEEEEcCCccEEEEeeeeeeeeeeccccc------------cccc----------ccc
Q 004210 463 IGPFQTS----H---AETARVKVRVHLDLDGVVRVQSASLIEEFVDDSVRR------------ESRD----------AHL 513 (768)
Q Consensus 463 i~~~~~~----~---~~~~~i~v~~~~d~~Gil~v~~~~~~~~~~~~~~~~------------~~~~----------~~~ 513 (768)
++|+... . .....|+++|.+|.+|++.|+.++++++...++... .+++ +.+
T Consensus 493 lsgV~d~~kk~~~~~~~~KGIk~~F~~D~Sgi~~v~~~evv~e~~~~~d~~~~~st~~K~~~~~e~e~~~~~~~~~e~ae 572 (902)
T KOG0104|consen 493 LSGVKDALKKNSYSDSESKGIKASFSLDLSGIVLVSRVEVVFEKQKEEDSGDKKSTLSKLGSTSEGEETSDDSVQEEDAE 572 (902)
T ss_pred EecchHHHHhcccchhhccCceEEEEEcCcCceEEeeeeEEEeccCCcccchhhhhhhccccccccccccccccchhhhh
Confidence 9988754 1 235689999999999999999999887642211100 0000 000
Q ss_pred ccc------cccc----CCCC------CCCCCCccccccccc----ceeeeeeeecccCCCCCHHHHHHHHHHHHHHhhh
Q 004210 514 TLE------EDAK----SDHT------PATAIDPEINRKGKV----LKRLEIPVNENVNGGMTKTELSEAVEKEHQLVQQ 573 (768)
Q Consensus 514 ~~~------~~~~----~~~~------~~~~~~~~~~~~k~~----~~~~~i~i~~~~~~~ls~~e~~~~~~~~~~~~~~ 573 (768)
.+. +... ++++ +.+++..++..++.+ +....+..+...++.|+...+.....++..+.++
T Consensus 573 ~k~~ep~e~se~~ee~~~d~s~e~k~e~~t~e~~~~~~~~~~~~p~~~~~~i~~~~~~~~~l~~~~~~~~~~kl~d~~~~ 652 (902)
T KOG0104|consen 573 EKGLEPSERSELEEEAEEDASQEDKTEKETSEAQKPTEKKETPAPMVVRLQIQETYPDLPVLNENALDAAVAKLEDFVQK 652 (902)
T ss_pred hhccCccccccccccccccccccccccccchhccCcchhhcccCcceeEeeeeeecccccCCchhHHHHHHHHHHHHHHh
Confidence 000 0000 0000 000011111111111 1122233333334569999999999999999999
Q ss_pred hhhHHHHHHHHhhHHHHHHHHHHHHhh-HhhccCCHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHhHhHHH
Q 004210 574 DLKMERTKDRKNALESYVYEMRDKISN-IYRSFATESEREGISRNLRDTEEWLYEDGDDESENVYAERLEDLKKLVDPIE 652 (768)
Q Consensus 574 D~~~~~~~~akN~LEs~iy~~r~~l~~-~~~~~~t~~e~~~l~~~l~~~~~WL~~~g~~a~~~~~~~kl~~L~~~~~pi~ 652 (768)
|+.+.++++|.|.||+|+|++.++|++ +|..|++++|+..|.+.+..+.+||++++.+.++++|.+++.+|+++...+.
T Consensus 653 e~~k~~re~a~N~LE~~l~e~q~~l~d~ey~e~at~EEk~~L~~~~~~~~~Wleed~~~~~t~~~~ek~a~L~~l~~~~~ 732 (902)
T KOG0104|consen 653 EKEKSEREEASNELEAFLFELQDKLDDDEYAEVATEEEKKILKKKVSLLMDWLEEDGSQTPTEMLTEKLAELKKLETSKN 732 (902)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhcCchHhhhcCHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHhhhh
Confidence 999999999999999999999999985 7999999999999999999999999999999999999999999999999999
Q ss_pred HhhHhHHHHHHHHHHHHHHHHHHHHHHHhCC-----------CChhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcc
Q 004210 653 GRYKDEEARAQATGALLKCAMDYRKVVEAHS-----------LPSKVRDAVIDECSKAEEWLREKVTQQDSLPKDADPIL 721 (768)
Q Consensus 653 ~R~~e~~~rp~a~~~l~~~l~~~~~~~~~~~-----------~~~ee~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~ 721 (768)
+|..++.++|..++.+...|++..+++.... .+..++..|...++++..|+++....|.++++++||++
T Consensus 733 ~R~ee~kq~pe~l~~l~~~l~~s~~~l~~~~~~~~~~E~d~~ft~~e~~~L~k~i~~t~~W~~~~~~~~~k~~k~edp~~ 812 (902)
T KOG0104|consen 733 FREEERKQFPEELEALKNLLNRSFSFLKQARNLSTWEEKDTIFTKTEIDTLEKVIAKTTAWLNDRLDLFEKKAKTEDPVL 812 (902)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHhccccccccchhccchhhhhHHHHHHHHHHhHHHhhhhHHHHHhhhcccCccc
Confidence 9999999999999999999999999885321 56677899999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHhhhhc
Q 004210 722 WSTEIKRKSEALDLTCKCIM 741 (768)
Q Consensus 722 ~~~di~~k~~~l~~~~~~i~ 741 (768)
+++||..|++.|++.+.+++
T Consensus 813 k~kei~~K~k~Ldrev~~~l 832 (902)
T KOG0104|consen 813 KVKEIEEKAKSLDREVLYLL 832 (902)
T ss_pred cHHHHHHHHHhhHHHHHHHH
Confidence 99999999999999887776
No 4
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=100.00 E-value=5.2e-103 Score=905.99 Aligned_cols=602 Identities=28% Similarity=0.521 Sum_probs=555.0
Q ss_pred CeEEEEEcCccceEEEEEEcCCceEEEeCCCCCccceEEEEeeCCceeecHHHHhhhhhCCcchHhHHHHhcCCCCCChH
Q 004210 1 MSVVGFDIGNENCVIAAVKQGGMLDVLLNDESKRETPTVVSFSEKQRFLGSAGAASAMMNPKSTISQVKRLLGRKFREDD 80 (768)
Q Consensus 1 m~viGID~Gtt~s~va~~~~~~~~~i~~n~~~~r~~Ps~v~~~~~~~~~G~~A~~~~~~~p~~~~~~~k~llg~~~~~~~ 80 (768)
+.+||||||||||+||++++|. ++++.|..|+|.+||+|+|.+++++||..|..+..++|.++++++||+||+.++++.
T Consensus 4 ~~~iGIDlGTt~s~va~~~~g~-~~ii~n~~g~r~tPS~V~f~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~ 82 (653)
T PTZ00009 4 GPAIGIDLGTTYSCVGVWKNEN-VEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVARNPENTVFDAKRLIGRKFDDSV 82 (653)
T ss_pred ccEEEEEeCcccEEEEEEeCCc-eEEEECCCCCccCCcEEEECCCCEEEcHHHHHhhhhCcccEEhhhHHHhCCCCCchh
Confidence 4699999999999999999987 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhccCCceeeecCCCCEEEEEEecCceeEecHHHHHHHHHHHHHHHHHhhccCCCCeEEEEeCCCCCHHHHHHHHHH
Q 004210 81 VQKDLKLFPFETCESHDGGILIMLEYLGETHKFTPVQILGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDVQRRAYLDA 160 (768)
Q Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~el~a~~L~~l~~~a~~~~~~~~~~~VitVP~~~~~~qr~~l~~A 160 (768)
++...+.+||.++..++|...+.+.+.++...++|+++++++|++|++.|+.+++.++.++|||||+||++.||+++++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~~A 162 (653)
T PTZ00009 83 VQSDMKHWPFKVTTGGDDKPMIEVTYQGEKKTFHPEEISSMVLQKMKEIAEAYLGKQVKDAVVTVPAYFNDSQRQATKDA 162 (653)
T ss_pred HhhhhhcCceEEEEcCCCceEEEEEeCCceEEECHHHHHHHHHHHHHHHHHHHhCCCcceeEEEeCCCCCHHHHHHHHHH
Confidence 99999999999998889999999998887789999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCcceEeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCCchhhHHHHHH
Q 004210 161 ATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEVLS 240 (768)
Q Consensus 161 a~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~d~~l~ 240 (768)
|++|||++++||+||+|||++|++.+.. ..+.++|||||||||||+||+++.++.++|+++.|+.++||++||..|+
T Consensus 163 a~~AGl~v~~li~EptAAAl~y~~~~~~---~~~~~vlv~D~GggT~dvsv~~~~~~~~~v~a~~gd~~lGG~d~D~~l~ 239 (653)
T PTZ00009 163 GTIAGLNVLRIINEPTAAAIAYGLDKKG---DGEKNVLIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDNRLV 239 (653)
T ss_pred HHHcCCceeEEecchHHHHHHHhhhccC---CCCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCCChHHHHHHHH
Confidence 9999999999999999999999986532 3467899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhc-ccCccCChHHHHHHHHHHHHHhhhccCCCcccEEEeccccCcceEEEecHHHHHHHHHHHHHHHHHHH
Q 004210 241 SYFAAQFKQQY-DIDVYTNVKASIRLRASCEKLKKVLSANAEAPLNIECLMNEKDVKGFIRREEFEKLSSSLLERMRIPC 319 (768)
Q Consensus 241 ~~l~~~~~~~~-~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~i~i~~l~~~~d~~~~itr~~fe~~~~~~~~~i~~~i 319 (768)
+|+.++|..++ +.++..+++++.||+.+||++|+.||.+.++.+.+++++++.++.++|||++|+++|+++++++..+|
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~aEkaK~~LS~~~~~~i~i~~~~~~~d~~~~itR~~fe~l~~~l~~~~~~~i 319 (653)
T PTZ00009 240 EFCVQDFKRKNRGKDLSSNQRALRRLRTQCERAKRTLSSSTQATIEIDSLFEGIDYNVTISRARFEELCGDYFRNTLQPV 319 (653)
T ss_pred HHHHHHHHHhccCCCCccCHHHHHHHHHHHHHHHHhCCCCceEEEEEEeccCCceEEEEECHHHHHHHHHHHHHHHHHHH
Confidence 99999998877 46788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCcCEEEEecCCCChHHHHHHHHhhcC-CCCCCcCChhhHHHhHHHHHhhHhcCC--ccccceEEeecc
Q 004210 320 QKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFN-REPGRTINASECVARGCALQCAMLSPQ--YCVREFEVQDSF 396 (768)
Q Consensus 320 ~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~fg-~~v~~~~n~~eava~Gaa~~a~~ls~~--~~~~~~~~~d~~ 396 (768)
+++|+++++...+|+.|+||||+||+|+|+++|+++|| ..+..++|||+|||+|||++|+++++. ++++++.+.|++
T Consensus 320 ~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~i~~~f~~~~~~~~~npdeaVA~GAa~~aa~ls~~~~~~~~~~~~~dv~ 399 (653)
T PTZ00009 320 EKVLKDAGMDKRSVHEVVLVGGSTRIPKVQSLIKDFFNGKEPCKSINPDEAVAYGAAVQAAILTGEQSSQVQDLLLLDVT 399 (653)
T ss_pred HHHHHHcCCCHHHCcEEEEECCCCCChhHHHHHHHHhCCCCCCCCCCcchHHhhhhhhhHHHhcCCccccccceEEEeec
Confidence 99999999999999999999999999999999999996 678899999999999999999999985 788999999999
Q ss_pred ceeeEEEecCCCcccceeEEEecCCCCCCceeEEEEeecC----ceEEEEEEeccccCCCCCCCcceeEEecCCCCCCCC
Q 004210 397 PFSIGFSSEKGPICTFSNGVLLPKGQPFPSVKILTLHRSN----GFQLQAFYADQNELPSVVSPQISSFMIGPFQTSHAE 472 (768)
Q Consensus 397 ~~~i~i~~~~~~~~~~~~~~l~~~g~~~p~~k~~~f~~~~----~~~i~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~ 472 (768)
|++||++..++ .+.+||++|+++|++++.+|++.. .+.|.+++++. ....+|..||+|.|.++++.+.+
T Consensus 400 p~slgi~~~~~-----~~~~ii~~~t~iP~~~~~~f~t~~d~q~~~~i~i~ege~--~~~~~n~~lg~~~i~~i~~~~~g 472 (653)
T PTZ00009 400 PLSLGLETAGG-----VMTKLIERNTTIPTKKSQIFTTYADNQPGVLIQVFEGER--AMTKDNNLLGKFHLDGIPPAPRG 472 (653)
T ss_pred ccccCccccCC-----ceEEEEeCCCcCCccceeEeEeecCCCceEEEEEEeccc--ccCCCCceEEEEEEcCCCCCCCC
Confidence 99999988766 788999999999999999997533 27788876543 23468899999999999998888
Q ss_pred cceEEEEEEEcCCccEEEEeeeeeeeeeecccccccccccccccccccCCCCCCCCCCcccccccccceeeeeeeecccC
Q 004210 473 TARVKVRVHLDLDGVVRVQSASLIEEFVDDSVRRESRDAHLTLEEDAKSDHTPATAIDPEINRKGKVLKRLEIPVNENVN 552 (768)
Q Consensus 473 ~~~i~v~~~~d~~Gil~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~i~~~~~ 552 (768)
.+.|+|+|++|.+|+|+|++.+ +.+++...++|....
T Consensus 473 ~~~i~v~f~id~~Gil~v~~~~------------------------------------------~~t~~~~~~~i~~~~- 509 (653)
T PTZ00009 473 VPQIEVTFDIDANGILNVSAED------------------------------------------KSTGKSNKITITNDK- 509 (653)
T ss_pred CceEEEEEEECCCCeEEEEEec------------------------------------------ccCCceeeEEEeecc-
Confidence 8899999999999999998752 112333445555433
Q ss_pred CCCCHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHHHHHHHhh-HhhccCCHHHHHHHHHHHHHHHHHHhhcCCC
Q 004210 553 GGMTKTELSEAVEKEHQLVQQDLKMERTKDRKNALESYVYEMRDKISN-IYRSFATESEREGISRNLRDTEEWLYEDGDD 631 (768)
Q Consensus 553 ~~ls~~e~~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~-~~~~~~t~~e~~~l~~~l~~~~~WL~~~g~~ 631 (768)
.+|+.++++++++++.+|..+|+.++++.+++|+||+|||++|++|++ .|..++++++|++|.+.|+++++|||+ +++
T Consensus 510 ~~ls~~~i~~~~~~~~~~~~~d~~~~~~~eakN~lEs~Iy~~r~~L~~~~~~~~~t~ee~~~l~~~l~~~~~wL~~-~~~ 588 (653)
T PTZ00009 510 GRLSKADIDRMVNEAEKYKAEDEANRERVEAKNGLENYCYSMKNTLQDEKVKGKLSDSDKATIEKAIDEALEWLEK-NQL 588 (653)
T ss_pred ccccHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhccCCHHHHHHHHHHHHHHHHHHhc-CCc
Confidence 579999999999999999999999999999999999999999999974 589999999999999999999999995 578
Q ss_pred ccHHHHHHHHHHHHHhHhHHHHhhHh
Q 004210 632 ESENVYAERLEDLKKLVDPIEGRYKD 657 (768)
Q Consensus 632 a~~~~~~~kl~~L~~~~~pi~~R~~e 657 (768)
++.++|++|+++|+++++||..|+..
T Consensus 589 ~~~~~~~~kl~eL~~~~~pi~~r~~~ 614 (653)
T PTZ00009 589 AEKEEFEHKQKEVESVCNPIMTKMYQ 614 (653)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999753
No 5
>PRK13410 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=2.7e-102 Score=895.32 Aligned_cols=610 Identities=25% Similarity=0.450 Sum_probs=549.8
Q ss_pred Ce-EEEEEcCccceEEEEEEcCCceEEEeCCCCCccceEEEEeeC-CceeecHHHHhhhhhCCcchHhHHHHhcCCCCCC
Q 004210 1 MS-VVGFDIGNENCVIAAVKQGGMLDVLLNDESKRETPTVVSFSE-KQRFLGSAGAASAMMNPKSTISQVKRLLGRKFRE 78 (768)
Q Consensus 1 m~-viGID~Gtt~s~va~~~~~~~~~i~~n~~~~r~~Ps~v~~~~-~~~~~G~~A~~~~~~~p~~~~~~~k~llg~~~~~ 78 (768)
|. |||||||||||+||++.+|. +.++.|..|+|.+||+|+|.. +++++|..|..++..+|.++++++||+||+.+.+
T Consensus 1 m~~viGIDlGTt~s~va~~~~g~-~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KRliG~~~~~ 79 (668)
T PRK13410 1 MGRIVGIDLGTTNSVVAVMEGGK-PVVIANAEGMRTTPSVVGFTKDGELLVGQLARRQLVLNPQNTFYNLKRFIGRRYDE 79 (668)
T ss_pred CCcEEEEEeCCCcEEEEEEECCe-EEEEECCCCCccCceEEEEeCCCCEEECHHHHHhhHhCccceehHHhhhhCCCchh
Confidence 53 89999999999999999998 888899999999999999974 6799999999999999999999999999999865
Q ss_pred hHHHhhhccCCceeeecCCCCEEEEEEecCceeEecHHHHHHHHHHHHHHHHHhhccCCCCeEEEEeCCCCCHHHHHHHH
Q 004210 79 DDVQKDLKLFPFETCESHDGGILIMLEYLGETHKFTPVQILGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDVQRRAYL 158 (768)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~el~a~~L~~l~~~a~~~~~~~~~~~VitVP~~~~~~qr~~l~ 158 (768)
++.+.+++||.+...++|.+.+.+...+ +.++|+++++++|++|++.|+.++|.++.++|||||+||++.||++++
T Consensus 80 --~~~~~~~~~~~v~~~~~g~~~i~~~~~~--~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~ 155 (668)
T PRK13410 80 --LDPESKRVPYTIRRNEQGNVRIKCPRLE--REFAPEELSAMILRKLADDASRYLGEPVTGAVITVPAYFNDSQRQATR 155 (668)
T ss_pred --hHHhhccCCeEEEECCCCcEEEEEecCC--eEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHH
Confidence 5556778999999998899888765443 689999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCcceEeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCCchhhHHHH
Q 004210 159 DAATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEV 238 (768)
Q Consensus 159 ~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~d~~ 238 (768)
+||++|||++++||+||+|||++|++.+ ..+.++|||||||||||+|++++.++.++|+++.|+.++||++||..
T Consensus 156 ~Aa~~AGl~v~~li~EPtAAAlayg~~~-----~~~~~vlV~DlGgGT~Dvsv~~~~~g~~~V~at~gd~~lGG~dfD~~ 230 (668)
T PRK13410 156 DAGRIAGLEVERILNEPTAAALAYGLDR-----SSSQTVLVFDLGGGTFDVSLLEVGNGVFEVKATSGDTQLGGNDFDKR 230 (668)
T ss_pred HHHHHcCCCeEEEecchHHHHHHhcccc-----CCCCEEEEEECCCCeEEEEEEEEcCCeEEEEEeecCCCCChhHHHHH
Confidence 9999999999999999999999999865 34679999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcccCccCChHHHHHHHHHHHHHhhhccCCCcccEEEeccccC----cceEEEecHHHHHHHHHHHHHH
Q 004210 239 LSSYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANAEAPLNIECLMNE----KDVKGFIRREEFEKLSSSLLER 314 (768)
Q Consensus 239 l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~i~i~~l~~~----~d~~~~itr~~fe~~~~~~~~~ 314 (768)
|++|+..+|..+++.++..+++++.+|+.+||++|+.||.+..+.+.++.++.+ .++...|||++|+++|.+++++
T Consensus 231 l~~~l~~~f~~~~~~d~~~~~~a~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~FE~l~~~l~~r 310 (668)
T PRK13410 231 IVDWLAEQFLEKEGIDLRRDRQALQRLTEAAEKAKIELSGVSVTDISLPFITATEDGPKHIETRLDRKQFESLCGDLLDR 310 (668)
T ss_pred HHHHHHHHHHhhhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeecCCCCCeeEEEEECHHHHHHHHHHHHHH
Confidence 999999999999999998899999999999999999999999999999887643 4688999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCcCEEEEecCCCChHHHHHHHHhhcCCCCCCcCChhhHHHhHHHHHhhHhcCCccccceEEee
Q 004210 315 MRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQCAMLSPQYCVREFEVQD 394 (768)
Q Consensus 315 i~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~Gaa~~a~~ls~~~~~~~~~~~d 394 (768)
+..+|+++|+++++.+.+|+.|+||||+||||+|+++|+++||.++..++||++|||+|||++|+++++. ++++.+.|
T Consensus 311 ~~~~i~~~L~~ag~~~~dId~VvLVGGssRiP~V~~~l~~~fg~~~~~~~npdeaVA~GAAi~aa~ls~~--~~~~~l~D 388 (668)
T PRK13410 311 LLRPVKRALKDAGLSPEDIDEVVLVGGSTRMPMVQQLVRTLIPREPNQNVNPDEVVAVGAAIQAGILAGE--LKDLLLLD 388 (668)
T ss_pred HHHHHHHHHHHcCCChhhCcEEEEECCccccHHHHHHHHHHcCCCcccCCCCchHHHHhHHHHHHhhccc--ccceeEEe
Confidence 9999999999999999999999999999999999999999999888999999999999999999999985 67899999
Q ss_pred ccceeeEEEecCCCcccceeEEEecCCCCCCceeEEEEeec--CceEEEEEEeccccCCCCCCCcceeEEecCCCCCCCC
Q 004210 395 SFPFSIGFSSEKGPICTFSNGVLLPKGQPFPSVKILTLHRS--NGFQLQAFYADQNELPSVVSPQISSFMIGPFQTSHAE 472 (768)
Q Consensus 395 ~~~~~i~i~~~~~~~~~~~~~~l~~~g~~~p~~k~~~f~~~--~~~~i~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~ 472 (768)
++|++||+++.++ .+.+|||+|+++|++++.+|++. ++..+.+.+.++++....+|..||+|.|+++++++.|
T Consensus 389 v~p~slgie~~~g-----~~~~li~rnt~iP~~~~~~f~t~~dnq~~v~i~v~qGe~~~~~~n~~lg~~~l~~i~~~~~g 463 (668)
T PRK13410 389 VTPLSLGLETIGG-----VMKKLIPRNTTIPVRRSDVFSTSENNQSSVEIHVWQGEREMASDNKSLGRFKLSGIPPAPRG 463 (668)
T ss_pred eccccccceecCC-----eeEEEEeCCCcccccccccceeccCCCcEEEEEEEeeccccccCCceEEEEEEeCCCCCCCC
Confidence 9999999999876 78999999999999999999864 3444444333334445678999999999999999888
Q ss_pred cceEEEEEEEcCCccEEEEeeeeeeeeeecccccccccccccccccccCCCCCCCCCCcccccccccceeeeeeeecccC
Q 004210 473 TARVKVRVHLDLDGVVRVQSASLIEEFVDDSVRRESRDAHLTLEEDAKSDHTPATAIDPEINRKGKVLKRLEIPVNENVN 552 (768)
Q Consensus 473 ~~~i~v~~~~d~~Gil~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~i~~~~~ 552 (768)
.++|+|+|++|.||+|+|++.+ +.++++..++|...
T Consensus 464 ~~~I~v~f~id~nGiL~V~a~d------------------------------------------~~tg~~~~~~i~~~-- 499 (668)
T PRK13410 464 VPQVQVAFDIDANGILQVSATD------------------------------------------RTTGREQSVTIQGA-- 499 (668)
T ss_pred CCeEEEEEEECCCcEEEEEEEE------------------------------------------cCCCceeeeeeccc--
Confidence 8999999999999999999863 22233445556543
Q ss_pred CCCCHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHHHHHHHhh---HhhccCCHHHHHHHHHHHHHHHHHHhhcC
Q 004210 553 GGMTKTELSEAVEKEHQLVQQDLKMERTKDRKNALESYVYEMRDKISN---IYRSFATESEREGISRNLRDTEEWLYEDG 629 (768)
Q Consensus 553 ~~ls~~e~~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~---~~~~~~t~~e~~~l~~~l~~~~~WL~~~g 629 (768)
.+|+.++++++++++.+|..+|+.++++.++||+||+|||.+|++|.+ .|..++++++|+++...|+++++|||+++
T Consensus 500 ~~ls~~ei~~~~~~~~~~~~~d~~~~~~~e~kn~~e~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~wL~~~~ 579 (668)
T PRK13410 500 STLSEQEVNRMIQEAEAKADEDRRRRERIEKRNRALTLIAQAERRLRDAALEFGPYFAERQRRAVESAMRDVQDSLEQDD 579 (668)
T ss_pred ccCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCHHHHHHHHHHHHHHHHHHhcCC
Confidence 479999999999999999999999999999999999999999999975 58899999999999999999999999998
Q ss_pred CCccHHHHHHHHHHHHHhHhHHHHhhHhHHHHHHHHHHHHHHHH
Q 004210 630 DDESENVYAERLEDLKKLVDPIEGRYKDEEARAQATGALLKCAM 673 (768)
Q Consensus 630 ~~a~~~~~~~kl~~L~~~~~pi~~R~~e~~~rp~a~~~l~~~l~ 673 (768)
.+...+.|.++++.|+.++.||..|+.| .-..-+..+++.+.
T Consensus 580 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 621 (668)
T PRK13410 580 DRELDLAVADLQEALYGLNREVRAEYKE--EDEGPLQGIKNTFG 621 (668)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh--cccchhhhHHhhcc
Confidence 8899999999999999999999999999 22223344444444
No 6
>PRK13411 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=1.6e-99 Score=875.54 Aligned_cols=591 Identities=26% Similarity=0.463 Sum_probs=535.1
Q ss_pred Ce-EEEEEcCccceEEEEEEcCCceEEEeCCCCCccceEEEEeeC-CceeecHHHHhhhhhCCcchHhHHHHhcCCCCCC
Q 004210 1 MS-VVGFDIGNENCVIAAVKQGGMLDVLLNDESKRETPTVVSFSE-KQRFLGSAGAASAMMNPKSTISQVKRLLGRKFRE 78 (768)
Q Consensus 1 m~-viGID~Gtt~s~va~~~~~~~~~i~~n~~~~r~~Ps~v~~~~-~~~~~G~~A~~~~~~~p~~~~~~~k~llg~~~~~ 78 (768)
|+ +||||||||||+||++.+|. +.++.|..|+|.+||+|+|.+ ++++||..|..+..++|.++++++|||||+.+++
T Consensus 1 m~~viGIDlGTt~s~va~~~~g~-~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d 79 (653)
T PRK13411 1 MGKVIGIDLGTTNSCVAVLEGGK-PIVIPNSEGGRTTPSIVGFGKSGDRLVGQLAKRQAVTNAENTVYSIKRFIGRRWDD 79 (653)
T ss_pred CCcEEEEEeCcccEEEEEEECCE-EEEEECCCCCccCceEEEEeCCCCEEEcHHHHHhhhhCcccchHHHHHHhCCCccc
Confidence 53 89999999999999999998 789999999999999999975 5799999999999999999999999999999988
Q ss_pred hHHHhhhccCCceeeecCCCCEEEEEEecCceeEecHHHHHHHHHHHHHHHHHhhccCCCCeEEEEeCCCCCHHHHHHHH
Q 004210 79 DDVQKDLKLFPFETCESHDGGILIMLEYLGETHKFTPVQILGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDVQRRAYL 158 (768)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~el~a~~L~~l~~~a~~~~~~~~~~~VitVP~~~~~~qr~~l~ 158 (768)
+. .+.+++||.++...+|.+.+.+. + ..++|+++++++|++|++.|+.++|.++.++|||||+||++.||++++
T Consensus 80 ~~--~~~~~~~~~~v~~~~~~~~~~i~--~--~~~~peei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~ 153 (653)
T PRK13411 80 TE--EERSRVPYTCVKGRDDTVNVQIR--G--RNYTPQEISAMILQKLKQDAEAYLGEPVTQAVITVPAYFTDAQRQATK 153 (653)
T ss_pred hh--HHhhcCCceEEecCCCceEEEEC--C--EEECHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCcHHHHHHH
Confidence 64 45678999999888888777653 3 579999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCcceEeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCCchhhHHHH
Q 004210 159 DAATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEV 238 (768)
Q Consensus 159 ~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~d~~ 238 (768)
+||++|||++++||+||+|||++|++.+. ..+.++|||||||||||+|++++.++.++|+++.|+.++||++||..
T Consensus 154 ~Aa~~AGl~v~~li~EPtAAAl~y~~~~~----~~~~~vlV~DlGgGT~dvsi~~~~~~~~~V~at~gd~~LGG~dfD~~ 229 (653)
T PRK13411 154 DAGTIAGLEVLRIINEPTAAALAYGLDKQ----DQEQLILVFDLGGGTFDVSILQLGDGVFEVKATAGNNHLGGDDFDNC 229 (653)
T ss_pred HHHHHcCCCeEEEecchHHHHHHhccccc----CCCCEEEEEEcCCCeEEEEEEEEeCCEEEEEEEecCCCcCHHHHHHH
Confidence 99999999999999999999999998653 34678999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcccCccCChHHHHHHHHHHHHHhhhccCCCcccEEEeccccC----cceEEEecHHHHHHHHHHHHHH
Q 004210 239 LSSYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANAEAPLNIECLMNE----KDVKGFIRREEFEKLSSSLLER 314 (768)
Q Consensus 239 l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~i~i~~l~~~----~d~~~~itr~~fe~~~~~~~~~ 314 (768)
|++|+.++|..+++.++..+++++.||+.+||++|+.||.+.++.+++++++.+ .++.+.|||++|+++|+|++++
T Consensus 230 l~~~l~~~f~~~~~~d~~~~~~~~~rL~~~aE~aK~~LS~~~~~~i~i~~~~~d~~~~~~~~~~itR~~fe~l~~~l~~~ 309 (653)
T PRK13411 230 IVDWLVENFQQQEGIDLSQDKMALQRLREAAEKAKIELSSMLTTSINLPFITADETGPKHLEMELTRAKFEELTKDLVEA 309 (653)
T ss_pred HHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeccCCCCCeeEEEEEcHHHHHHHHHHHHHH
Confidence 999999999998998999999999999999999999999999999999877543 4788999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCcCEEEEecCCCChHHHHHHHHhhcC-CCCCCcCChhhHHHhHHHHHhhHhcCCccccceEEe
Q 004210 315 MRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFN-REPGRTINASECVARGCALQCAMLSPQYCVREFEVQ 393 (768)
Q Consensus 315 i~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~fg-~~v~~~~n~~eava~Gaa~~a~~ls~~~~~~~~~~~ 393 (768)
+..+|+++|+++++...+|+.|+||||+||+|+|++.|+++|| ..+..++||++|||+|||++|+++++. ++++.+.
T Consensus 310 ~~~~i~~~L~~a~~~~~~id~ViLvGGssriP~v~~~l~~~f~~~~~~~~~npdeaVA~GAAi~aa~l~~~--~~~~~~~ 387 (653)
T PRK13411 310 TIEPMQQALKDAGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGGKQPDRSVNPDEAVALGAAIQAGVLGGE--VKDLLLL 387 (653)
T ss_pred HHHHHHHHHHHcCCCHHHCcEEEEECCCCCcchHHHHHHHHcCCcCcCCCCCchHHHHHHHHHHHHhhcCC--ccceeee
Confidence 9999999999999999999999999999999999999999996 678899999999999999999999986 6789999
Q ss_pred eccceeeEEEecCCCcccceeEEEecCCCCCCceeEEEEee--cCceEEEEEEeccccCCCCCCCcceeEEecCCCCCCC
Q 004210 394 DSFPFSIGFSSEKGPICTFSNGVLLPKGQPFPSVKILTLHR--SNGFQLQAFYADQNELPSVVSPQISSFMIGPFQTSHA 471 (768)
Q Consensus 394 d~~~~~i~i~~~~~~~~~~~~~~l~~~g~~~p~~k~~~f~~--~~~~~i~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~ 471 (768)
|++|++||+++.++ .+.+||++|+++|++++.+|.+ +++..+.+.+.++++....+|..||+|.+.++++++.
T Consensus 388 dv~p~slgi~~~~~-----~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~v~~ge~~~~~~n~~lg~~~l~~i~~~~~ 462 (653)
T PRK13411 388 DVTPLSLGIETLGE-----VFTKIIERNTTIPTSKSQVFSTATDGQTSVEIHVLQGERAMAKDNKSLGKFLLTGIPPAPR 462 (653)
T ss_pred ecccceeeEEecCC-----ceEEEEECCCcccceeeEEEEeccCCCeEEEEEEEEecCcccccCceeeEEEEcCCCCCCC
Confidence 99999999999876 7899999999999999999986 4444444433333444457899999999999999888
Q ss_pred CcceEEEEEEEcCCccEEEEeeeeeeeeeecccccccccccccccccccCCCCCCCCCCcccccccccceeeeeeeeccc
Q 004210 472 ETARVKVRVHLDLDGVVRVQSASLIEEFVDDSVRRESRDAHLTLEEDAKSDHTPATAIDPEINRKGKVLKRLEIPVNENV 551 (768)
Q Consensus 472 ~~~~i~v~~~~d~~Gil~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~i~~~~ 551 (768)
|.++|+|+|.+|.+|+|+|++.+ ..++++..+.++..
T Consensus 463 g~~~i~v~f~id~~Gil~v~a~d------------------------------------------~~t~~~~~~~i~~~- 499 (653)
T PRK13411 463 GVPQIEVSFEIDVNGILKVSAQD------------------------------------------QGTGREQSIRITNT- 499 (653)
T ss_pred CCccEEEEEEECCCCeEEEEEee------------------------------------------ccCCceEeeEEecc-
Confidence 88899999999999999999852 11233334555543
Q ss_pred CCCCCHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHHHHHHHhhHhhccCCHHHHHHHHHHHHHHHHHHhhcCCC
Q 004210 552 NGGMTKTELSEAVEKEHQLVQQDLKMERTKDRKNALESYVYEMRDKISNIYRSFATESEREGISRNLRDTEEWLYEDGDD 631 (768)
Q Consensus 552 ~~~ls~~e~~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~t~~e~~~l~~~l~~~~~WL~~~g~~ 631 (768)
.+||.++++++++++.+|..+|+.++++.++||+||+|||.+|++|++ +..++++++|+++.+.|+++++|||++ +
T Consensus 500 -~~ls~~ei~~~~~~~~~~~~~D~~~~~~~eakN~lEs~iy~~r~~l~~-~~~~~~~~er~~i~~~l~~~~~wL~~~--~ 575 (653)
T PRK13411 500 -GGLSSNEIERMRQEAEKYAEEDRRRKQLIELKNQADSLLYSYESTLKE-NGELISEELKQRAEQKVEQLEAALTDP--N 575 (653)
T ss_pred -ccchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH-hhccCCHHHHHHHHHHHHHHHHHHhcC--C
Confidence 469999999999999999999999999999999999999999999975 688999999999999999999999983 5
Q ss_pred ccHHHHHHHHHHHHHhHhHHHHhhH
Q 004210 632 ESENVYAERLEDLKKLVDPIEGRYK 656 (768)
Q Consensus 632 a~~~~~~~kl~~L~~~~~pi~~R~~ 656 (768)
++.++|++++++|++.+.|+..+..
T Consensus 576 ~~~~~~~~~~~el~~~~~~i~~~~y 600 (653)
T PRK13411 576 ISLEELKQQLEEFQQALLAIGAEVY 600 (653)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999999999998764
No 7
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=100.00 E-value=9.8e-100 Score=877.54 Aligned_cols=586 Identities=26% Similarity=0.479 Sum_probs=538.6
Q ss_pred eEEEEEcCccceEEEEEEcCCceEEEeCCCCCccceEEEEeeC-CceeecHHHHhhhhhCCcchHhHHHHhcCCCCCChH
Q 004210 2 SVVGFDIGNENCVIAAVKQGGMLDVLLNDESKRETPTVVSFSE-KQRFLGSAGAASAMMNPKSTISQVKRLLGRKFREDD 80 (768)
Q Consensus 2 ~viGID~Gtt~s~va~~~~~~~~~i~~n~~~~r~~Ps~v~~~~-~~~~~G~~A~~~~~~~p~~~~~~~k~llg~~~~~~~ 80 (768)
++||||||||||+||++.+|. ++++.|..|+|.+||+|+|.+ +++++|..|..+..++|.++++++|||||+.++++.
T Consensus 42 ~viGIDlGTt~s~va~~~~~~-~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~ 120 (663)
T PTZ00400 42 DIVGIDLGTTNSCVAIMEGSQ-PKVIENSEGMRTTPSVVAFTEDGQRLVGIVAKRQAVTNPENTVFATKRLIGRRYDEDA 120 (663)
T ss_pred cEEEEEECcccEEEEEEeCCe-eEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhHHhCCcceehhhhhhcCCCcCcHH
Confidence 589999999999999998777 999999999999999999975 579999999999999999999999999999999999
Q ss_pred HHhhhccCCceeeecCCCCEEEEEEecCceeEecHHHHHHHHHHHHHHHHHhhccCCCCeEEEEeCCCCCHHHHHHHHHH
Q 004210 81 VQKDLKLFPFETCESHDGGILIMLEYLGETHKFTPVQILGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDVQRRAYLDA 160 (768)
Q Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~el~a~~L~~l~~~a~~~~~~~~~~~VitVP~~~~~~qr~~l~~A 160 (768)
++...+.+||.++..++|.+.+.+. ...++|+++++++|++|++.|+.++|.++.++|||||+||++.||+++++|
T Consensus 121 ~~~~~~~~p~~~~~~~~~~~~~~~~----~~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~A 196 (663)
T PTZ00400 121 TKKEQKILPYKIVRASNGDAWIEAQ----GKKYSPSQIGAFVLEKMKETAESYLGRKVKQAVITVPAYFNDSQRQATKDA 196 (663)
T ss_pred HHhhhccCCeEEEecCCCceEEEEC----CEEECHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHHHH
Confidence 9999999999999988888877653 357999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCcceEeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCCchhhHHHHHH
Q 004210 161 ATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEVLS 240 (768)
Q Consensus 161 a~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~d~~l~ 240 (768)
|++|||++++||+||+|||++|+... ..+.++|||||||||||+|++++.++.++|+++.|+.++||++||..|+
T Consensus 197 a~~AGl~v~~li~EptAAAlay~~~~-----~~~~~vlV~DlGgGT~DvSv~~~~~g~~~v~a~~gd~~LGG~d~D~~l~ 271 (663)
T PTZ00400 197 GKIAGLDVLRIINEPTAAALAFGMDK-----NDGKTIAVYDLGGGTFDISILEILGGVFEVKATNGNTSLGGEDFDQRIL 271 (663)
T ss_pred HHHcCCceEEEeCchHHHHHHhcccc-----CCCcEEEEEeCCCCeEEEEEEEecCCeeEEEecccCCCcCHHHHHHHHH
Confidence 99999999999999999999999764 3468999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcccCccCChHHHHHHHHHHHHHhhhccCCCcccEEEeccccC----cceEEEecHHHHHHHHHHHHHHHH
Q 004210 241 SYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANAEAPLNIECLMNE----KDVKGFIRREEFEKLSSSLLERMR 316 (768)
Q Consensus 241 ~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~i~i~~l~~~----~d~~~~itr~~fe~~~~~~~~~i~ 316 (768)
+|+..+|..+++.++..+++++.+|+.+||++|+.||.+.++.+.++.++.+ .++.++|||++|+++|+++++++.
T Consensus 272 ~~l~~~f~~~~~~~~~~~~~a~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~efe~l~~~l~~~~~ 351 (663)
T PTZ00400 272 NYLIAEFKKQQGIDLKKDKLALQRLREAAETAKIELSSKTQTEINLPFITADQSGPKHLQIKLSRAKLEELTHDLLKKTI 351 (663)
T ss_pred HHHHHHhhhhcCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEEEeeccCCCCceEEEEEECHHHHHHHHHHHHHHHH
Confidence 9999999999998888999999999999999999999999888998877654 478999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCcCEEEEecCCCChHHHHHHHHhhcCCCCCCcCChhhHHHhHHHHHhhHhcCCccccceEEeecc
Q 004210 317 IPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQCAMLSPQYCVREFEVQDSF 396 (768)
Q Consensus 317 ~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~Gaa~~a~~ls~~~~~~~~~~~d~~ 396 (768)
.+++++|+++++.+.+|+.|+||||+||+|+|+++|+++||.++..++||+++||+|||++|+++++. ++++.+.|++
T Consensus 352 ~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~f~~~~~~~~npdeaVA~GAAi~aa~l~~~--~~~~~~~dv~ 429 (663)
T PTZ00400 352 EPCEKCIKDAGVKKDELNDVILVGGMTRMPKVSETVKKIFGKEPSKGVNPDEAVAMGAAIQAGVLKGE--IKDLLLLDVT 429 (663)
T ss_pred HHHHHHHHHcCCCHHHCcEEEEECCccCChHHHHHHHHHhCCCcccCCCCccceeeccHHHHHhhcCC--ccceEEEecc
Confidence 99999999999999999999999999999999999999999888999999999999999999999985 5789999999
Q ss_pred ceeeEEEecCCCcccceeEEEecCCCCCCceeEEEEeecCc----eEEEEEEeccccCCCCCCCcceeEEecCCCCCCCC
Q 004210 397 PFSIGFSSEKGPICTFSNGVLLPKGQPFPSVKILTLHRSNG----FQLQAFYADQNELPSVVSPQISSFMIGPFQTSHAE 472 (768)
Q Consensus 397 ~~~i~i~~~~~~~~~~~~~~l~~~g~~~p~~k~~~f~~~~~----~~i~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~ 472 (768)
|++||+++.++ .+.+||++|+++|++++.+|.+..+ +.|.+++++. ....+|..||+|.|.++++.+.|
T Consensus 430 p~slgi~~~~g-----~~~~ii~~~t~iP~~~~~~f~~~~d~q~~~~i~i~ege~--~~~~~n~~lg~~~i~~i~~~~~g 502 (663)
T PTZ00400 430 PLSLGIETLGG-----VFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVFQGER--EMAADNKLLGQFDLVGIPPAPRG 502 (663)
T ss_pred ccceEEEecCC-----eeEEEEecCccCCccceeeeeeccCCCceEEEEEEEecC--ccCCcCceeEEEEEcCCCCCCCC
Confidence 99999999877 7899999999999999999987533 6677766543 23478899999999999998888
Q ss_pred cceEEEEEEEcCCccEEEEeeeeeeeeeecccccccccccccccccccCCCCCCCCCCcccccccccceeeeeeeecccC
Q 004210 473 TARVKVRVHLDLDGVVRVQSASLIEEFVDDSVRRESRDAHLTLEEDAKSDHTPATAIDPEINRKGKVLKRLEIPVNENVN 552 (768)
Q Consensus 473 ~~~i~v~~~~d~~Gil~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~i~~~~~ 552 (768)
.+.|+|+|.+|.+|+|+|++.+ +.++++..++|+..
T Consensus 503 ~~~i~v~f~id~~Gil~v~a~~------------------------------------------~~~~~~~~~~i~~~-- 538 (663)
T PTZ00400 503 VPQIEVTFDVDANGIMNISAVD------------------------------------------KSTGKKQEITIQSS-- 538 (663)
T ss_pred CceEEEEEEECCCCCEEEEEEe------------------------------------------ccCCcEEEEEeecc--
Confidence 8899999999999999998862 22344455666544
Q ss_pred CCCCHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHHHHHHHhhHhhccCCHHHHHHHHHHHHHHHHHHhhcCCCc
Q 004210 553 GGMTKTELSEAVEKEHQLVQQDLKMERTKDRKNALESYVYEMRDKISNIYRSFATESEREGISRNLRDTEEWLYEDGDDE 632 (768)
Q Consensus 553 ~~ls~~e~~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~t~~e~~~l~~~l~~~~~WL~~~g~~a 632 (768)
.+|+.++++++.+++.+|..+|+.++++.++||+||+|||++|++|.+ +..++++++|+++.+.++++++|||++
T Consensus 539 ~~ls~~ei~~~~~~~~~~~~~D~~~~~~~eakN~lEs~iy~~r~~l~e-~~~~~s~~ere~i~~~l~~~~~WL~~~---- 613 (663)
T PTZ00400 539 GGLSDEEIEKMVKEAEEYKEQDEKKKELVDAKNEAETLIYSVEKQLSD-LKDKISDADKDELKQKITKLRSTLSSE---- 613 (663)
T ss_pred ccccHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhCCHHHHHHHHHHHHHHHHHHhcC----
Confidence 469999999999999999999999999999999999999999999976 889999999999999999999999976
Q ss_pred cHHHHHHHHHHHHHhHhHHHHhh
Q 004210 633 SENVYAERLEDLKKLVDPIEGRY 655 (768)
Q Consensus 633 ~~~~~~~kl~~L~~~~~pi~~R~ 655 (768)
+.++|++++++|+++..++..++
T Consensus 614 d~~~i~~k~~eL~~~l~~l~~k~ 636 (663)
T PTZ00400 614 DVDSIKDKTKQLQEASWKISQQA 636 (663)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999754
No 8
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=100.00 E-value=4.1e-98 Score=865.86 Aligned_cols=587 Identities=28% Similarity=0.508 Sum_probs=537.1
Q ss_pred Ce-EEEEEcCccceEEEEEEcCCceEEEeCCCCCccceEEEEee-CCceeecHHHHhhhhhCCcchHhHHHHhcCCCCCC
Q 004210 1 MS-VVGFDIGNENCVIAAVKQGGMLDVLLNDESKRETPTVVSFS-EKQRFLGSAGAASAMMNPKSTISQVKRLLGRKFRE 78 (768)
Q Consensus 1 m~-viGID~Gtt~s~va~~~~~~~~~i~~n~~~~r~~Ps~v~~~-~~~~~~G~~A~~~~~~~p~~~~~~~k~llg~~~~~ 78 (768)
|+ +||||||||||+||++++|. ++++.|..|+|.+||+|+|. +++++||..|..+..++|.++++++|||||+. +
T Consensus 1 m~~viGIDlGTt~s~va~~~~g~-~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~--~ 77 (627)
T PRK00290 1 MGKIIGIDLGTTNSCVAVMEGGE-PKVIENAEGARTTPSVVAFTKDGERLVGQPAKRQAVTNPENTIFSIKRLMGRR--D 77 (627)
T ss_pred CCcEEEEEeCcccEEEEEEECCE-EEEEECCCCCcccceEEEEeCCCCEEEcHHHHHhhhhCchhhHHHHHHHhCCC--c
Confidence 64 99999999999999999988 88999999999999999997 66899999999999999999999999999998 6
Q ss_pred hHHHhhhccCCceeeecCCCCEEEEEEecCceeEecHHHHHHHHHHHHHHHHHhhccCCCCeEEEEeCCCCCHHHHHHHH
Q 004210 79 DDVQKDLKLFPFETCESHDGGILIMLEYLGETHKFTPVQILGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDVQRRAYL 158 (768)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~el~a~~L~~l~~~a~~~~~~~~~~~VitVP~~~~~~qr~~l~ 158 (768)
+.++.+.+++||.++..++|...+.+ +| ..++|+++++++|++|++.|+.+++.++.++|||||+||++.||++++
T Consensus 78 ~~~~~~~~~~p~~~~~~~~~~~~~~~--~~--~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~ 153 (627)
T PRK00290 78 EEVQKDIKLVPYKIVKADNGDAWVEI--DG--KKYTPQEISAMILQKLKKDAEDYLGEKVTEAVITVPAYFNDAQRQATK 153 (627)
T ss_pred hHHHHHhhcCCeEEEEcCCCceEEEE--CC--EEEcHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHH
Confidence 77888889999999998888877655 33 579999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCcceEeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCCchhhHHHH
Q 004210 159 DAATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEV 238 (768)
Q Consensus 159 ~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~d~~ 238 (768)
+||++|||++++||+||+|||++|++.. ..+.++|||||||||||+|++++.++.++++++.|+.++||++||..
T Consensus 154 ~Aa~~AGl~v~~li~EptAAAl~y~~~~-----~~~~~vlV~D~GggT~dvsv~~~~~~~~~vla~~gd~~lGG~d~D~~ 228 (627)
T PRK00290 154 DAGKIAGLEVLRIINEPTAAALAYGLDK-----KGDEKILVYDLGGGTFDVSILEIGDGVFEVLSTNGDTHLGGDDFDQR 228 (627)
T ss_pred HHHHHcCCceEEEecchHHHHHHhhhcc-----CCCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCcChHHHHHH
Confidence 9999999999999999999999999765 24688999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcccCccCChHHHHHHHHHHHHHhhhccCCCcccEEEeccccC----cceEEEecHHHHHHHHHHHHHH
Q 004210 239 LSSYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANAEAPLNIECLMNE----KDVKGFIRREEFEKLSSSLLER 314 (768)
Q Consensus 239 l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~i~i~~l~~~----~d~~~~itr~~fe~~~~~~~~~ 314 (768)
|++|+.++|..+++.++..+++++.||+.+||++|+.||.+..+.+.++.++.+ .++.+.|||++|+++|++++++
T Consensus 229 l~~~~~~~~~~~~~~~~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~~fe~l~~~l~~~ 308 (627)
T PRK00290 229 IIDYLADEFKKENGIDLRKDKMALQRLKEAAEKAKIELSSAQQTEINLPFITADASGPKHLEIKLTRAKFEELTEDLVER 308 (627)
T ss_pred HHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeecccCCCCCeEEEEEECHHHHHHHHHHHHHH
Confidence 999999999999999998999999999999999999999999999999887653 5788999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCcCEEEEecCCCChHHHHHHHHhhcCCCCCCcCChhhHHHhHHHHHhhHhcCCccccceEEee
Q 004210 315 MRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQCAMLSPQYCVREFEVQD 394 (768)
Q Consensus 315 i~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~Gaa~~a~~ls~~~~~~~~~~~d 394 (768)
+..+|+++|+++++...+|+.|+||||+||+|+|++.|+++||.++..++||++|||+|||++|+++++. ++++.+.|
T Consensus 309 ~~~~i~~~l~~a~~~~~~id~ViLvGGssriP~v~~~l~~~fg~~~~~~~npdeava~GAa~~aa~l~~~--~~~~~~~d 386 (627)
T PRK00290 309 TIEPCKQALKDAGLSVSDIDEVILVGGSTRMPAVQELVKEFFGKEPNKGVNPDEVVAIGAAIQGGVLAGD--VKDVLLLD 386 (627)
T ss_pred HHHHHHHHHHHcCCChhhCcEEEEECCcCCChHHHHHHHHHhCCCCCcCcCChHHHHHhHHHHHHHhcCC--ccceeeee
Confidence 9999999999999999999999999999999999999999999889999999999999999999999984 67899999
Q ss_pred ccceeeEEEecCCCcccceeEEEecCCCCCCceeEEEEeecCc----eEEEEEEeccccCCCCCCCcceeEEecCCCCCC
Q 004210 395 SFPFSIGFSSEKGPICTFSNGVLLPKGQPFPSVKILTLHRSNG----FQLQAFYADQNELPSVVSPQISSFMIGPFQTSH 470 (768)
Q Consensus 395 ~~~~~i~i~~~~~~~~~~~~~~l~~~g~~~p~~k~~~f~~~~~----~~i~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~ 470 (768)
++|++||+++.++ .+.+|||+|+++|++++.+|.+..+ +.|.+++++. ....+|..||+|.|.++++.+
T Consensus 387 ~~~~slgi~~~~~-----~~~~ii~~~t~~P~~~~~~f~~~~d~q~~~~i~v~~ge~--~~~~~~~~lg~~~i~~~~~~~ 459 (627)
T PRK00290 387 VTPLSLGIETLGG-----VMTKLIERNTTIPTKKSQVFSTAADNQPAVTIHVLQGER--EMAADNKSLGRFNLTGIPPAP 459 (627)
T ss_pred ccceEEEEEecCC-----eEEEEecCCCcCCccceEEEEecCCCcceEEEEEEEecc--cccCcCceEEEEEECCCCCCC
Confidence 9999999999876 7889999999999999999987543 5677766543 345788999999999999988
Q ss_pred CCcceEEEEEEEcCCccEEEEeeeeeeeeeecccccccccccccccccccCCCCCCCCCCcccccccccceeeeeeeecc
Q 004210 471 AETARVKVRVHLDLDGVVRVQSASLIEEFVDDSVRRESRDAHLTLEEDAKSDHTPATAIDPEINRKGKVLKRLEIPVNEN 550 (768)
Q Consensus 471 ~~~~~i~v~~~~d~~Gil~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~i~~~ 550 (768)
.|.+.|+|+|.+|.+|+|+|++.+ ..+++...+.|...
T Consensus 460 ~g~~~i~v~f~~d~~gil~v~a~~------------------------------------------~~~~~~~~~~i~~~ 497 (627)
T PRK00290 460 RGVPQIEVTFDIDANGIVHVSAKD------------------------------------------KGTGKEQSITITAS 497 (627)
T ss_pred CCCceEEEEEEECCCceEEEEEEE------------------------------------------ccCCceeEEEeccc
Confidence 888899999999999999998853 12233344555443
Q ss_pred cCCCCCHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHHHHHHHhhHhhccCCHHHHHHHHHHHHHHHHHHhhcCC
Q 004210 551 VNGGMTKTELSEAVEKEHQLVQQDLKMERTKDRKNALESYVYEMRDKISNIYRSFATESEREGISRNLRDTEEWLYEDGD 630 (768)
Q Consensus 551 ~~~~ls~~e~~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~t~~e~~~l~~~l~~~~~WL~~~g~ 630 (768)
.+|+.++++++++++.+|..+|+..+++.++||+||+|||.+|++|+ ++..++++++|+++.+.|+++++|||++
T Consensus 498 --~~ls~e~i~~~~~~~~~~~~~d~~~~~~~eakN~le~~i~~~~~~l~-~~~~~~~~~e~~~i~~~l~~~~~wL~~~-- 572 (627)
T PRK00290 498 --SGLSDEEIERMVKDAEANAEEDKKRKELVEARNQADSLIYQTEKTLK-ELGDKVPADEKEKIEAAIKELKEALKGE-- 572 (627)
T ss_pred --cccCHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHH-HHhccCCHHHHHHHHHHHHHHHHHHhcC--
Confidence 46999999999999999999999999999999999999999999997 4788999999999999999999999975
Q ss_pred CccHHHHHHHHHHHHHhHhHHHHhhHh
Q 004210 631 DESENVYAERLEDLKKLVDPIEGRYKD 657 (768)
Q Consensus 631 ~a~~~~~~~kl~~L~~~~~pi~~R~~e 657 (768)
+.++|++++++|+++.+|+..|+..
T Consensus 573 --~~~~i~~k~~~L~~~~~~~~~~~~~ 597 (627)
T PRK00290 573 --DKEAIKAKTEELTQASQKLGEAMYQ 597 (627)
T ss_pred --CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5689999999999999999988654
No 9
>PLN03184 chloroplast Hsp70; Provisional
Probab=100.00 E-value=2.8e-98 Score=865.48 Aligned_cols=588 Identities=26% Similarity=0.451 Sum_probs=530.3
Q ss_pred eEEEEEcCccceEEEEEEcCCceEEEeCCCCCccceEEEEeeC-CceeecHHHHhhhhhCCcchHhHHHHhcCCCCCChH
Q 004210 2 SVVGFDIGNENCVIAAVKQGGMLDVLLNDESKRETPTVVSFSE-KQRFLGSAGAASAMMNPKSTISQVKRLLGRKFREDD 80 (768)
Q Consensus 2 ~viGID~Gtt~s~va~~~~~~~~~i~~n~~~~r~~Ps~v~~~~-~~~~~G~~A~~~~~~~p~~~~~~~k~llg~~~~~~~ 80 (768)
.|||||||||||+||++.+|. ++++.|..|+|.+||+|+|.+ +++++|..|..+..++|.++++++|||||+.+.+
T Consensus 40 ~viGIDlGTt~s~va~~~~g~-~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d-- 116 (673)
T PLN03184 40 KVVGIDLGTTNSAVAAMEGGK-PTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSE-- 116 (673)
T ss_pred CEEEEEeCcCcEEEEEEECCe-EEEEECCCCCeecceEEEEcCCCCEEECHHHHHhhhhCchhhhHHHHHhhCCCcch--
Confidence 489999999999999999998 889999999999999999975 5799999999999999999999999999999865
Q ss_pred HHhhhccCCceeeecCCCCEEEEEEecCceeEecHHHHHHHHHHHHHHHHHhhccCCCCeEEEEeCCCCCHHHHHHHHHH
Q 004210 81 VQKDLKLFPFETCESHDGGILIMLEYLGETHKFTPVQILGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDVQRRAYLDA 160 (768)
Q Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~el~a~~L~~l~~~a~~~~~~~~~~~VitVP~~~~~~qr~~l~~A 160 (768)
++.+.+.+||.++..++|.+.+.+.+.+ ..++|+++++++|++|++.++.+++.++.++|||||+||++.||+++++|
T Consensus 117 ~~~~~~~~~~~v~~~~~~~v~~~~~~~~--~~~speei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~A 194 (673)
T PLN03184 117 VDEESKQVSYRVVRDENGNVKLDCPAIG--KQFAAEEISAQVLRKLVDDASKFLNDKVTKAVITVPAYFNDSQRTATKDA 194 (673)
T ss_pred hhhhhhcCCeEEEecCCCcEEEEEecCC--eEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHH
Confidence 4566778999999988899888776554 47999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCcceEeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCCchhhHHHHHH
Q 004210 161 ATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEVLS 240 (768)
Q Consensus 161 a~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~d~~l~ 240 (768)
|++|||++++||+||+|||++|++.. ..+.++|||||||||||+|++++.++.++|+++.|+.++||++||..|+
T Consensus 195 a~~AGl~v~~li~EPtAAAlayg~~~-----~~~~~vlV~DlGgGT~DvSi~~~~~~~~eVla~~gd~~LGG~dfD~~L~ 269 (673)
T PLN03184 195 GRIAGLEVLRIINEPTAASLAYGFEK-----KSNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIV 269 (673)
T ss_pred HHHCCCCeEEEeCcHHHHHHHhhccc-----CCCCEEEEEECCCCeEEEEEEEecCCEEEEEEecCCCccCHHHHHHHHH
Confidence 99999999999999999999999765 2467899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcccCccCChHHHHHHHHHHHHHhhhccCCCcccEEEecccc----CcceEEEecHHHHHHHHHHHHHHHH
Q 004210 241 SYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANAEAPLNIECLMN----EKDVKGFIRREEFEKLSSSLLERMR 316 (768)
Q Consensus 241 ~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~i~i~~l~~----~~d~~~~itr~~fe~~~~~~~~~i~ 316 (768)
+|+..+|..+++.++..+++++.||+.+||++|+.||.+.++.+.++++.. +.++.+.|||++|+++|.++++++.
T Consensus 270 ~~~~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~r~~ 349 (673)
T PLN03184 270 DWLASNFKKDEGIDLLKDKQALQRLTEAAEKAKIELSSLTQTSISLPFITATADGPKHIDTTLTRAKFEELCSDLLDRCK 349 (673)
T ss_pred HHHHHHHHhhcCCCcccCHHHHHHHHHHHHHHHHhcCCCCcceEEEEeeeccCCCCceEEEEECHHHHHHHHHHHHHHHH
Confidence 999999999999888899999999999999999999999999998887643 2578899999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCcCEEEEecCCCChHHHHHHHHhhcCCCCCCcCChhhHHHhHHHHHhhHhcCCccccceEEeecc
Q 004210 317 IPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQCAMLSPQYCVREFEVQDSF 396 (768)
Q Consensus 317 ~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~Gaa~~a~~ls~~~~~~~~~~~d~~ 396 (768)
.+|+++|+++++.+.+|+.|+||||+||||.|+++|+++||..+..++|||+|||+|||++|+++++. ++++.+.|++
T Consensus 350 ~~i~~~L~~a~~~~~dId~ViLvGGssriP~V~~~i~~~fg~~~~~~~npdeaVA~GAAi~aa~ls~~--~~~~~~~dv~ 427 (673)
T PLN03184 350 TPVENALRDAKLSFKDIDEVILVGGSTRIPAVQELVKKLTGKDPNVTVNPDEVVALGAAVQAGVLAGE--VSDIVLLDVT 427 (673)
T ss_pred HHHHHHHHHcCCChhHccEEEEECCccccHHHHHHHHHHhCCCcccccCcchHHHHHHHHHHHHhccC--ccceEEEecc
Confidence 99999999999999999999999999999999999999999888899999999999999999999984 6789999999
Q ss_pred ceeeEEEecCCCcccceeEEEecCCCCCCceeEEEEeec--CceEEEEEEeccccCCCCCCCcceeEEecCCCCCCCCcc
Q 004210 397 PFSIGFSSEKGPICTFSNGVLLPKGQPFPSVKILTLHRS--NGFQLQAFYADQNELPSVVSPQISSFMIGPFQTSHAETA 474 (768)
Q Consensus 397 ~~~i~i~~~~~~~~~~~~~~l~~~g~~~p~~k~~~f~~~--~~~~i~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~ 474 (768)
|++||+++.++ .+.+|||+|+++|++++.+|.+. +++.+.+.+..++.....+|..||+|.|.++++.+.+.+
T Consensus 428 p~slgi~~~~~-----~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~i~~ge~~~~~~n~~lg~~~i~~i~~~~~g~~ 502 (673)
T PLN03184 428 PLSLGLETLGG-----VMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVP 502 (673)
T ss_pred cccceEEecCC-----eeEEEEeCCCccceecceEeeeecCCCcEEEEEEEeecccccccCceEEEEEEeCCCCCCCCCc
Confidence 99999999876 78999999999999999999874 456666654344444457889999999999999888888
Q ss_pred eEEEEEEEcCCccEEEEeeeeeeeeeecccccccccccccccccccCCCCCCCCCCcccccccccceeeeeeeecccCCC
Q 004210 475 RVKVRVHLDLDGVVRVQSASLIEEFVDDSVRRESRDAHLTLEEDAKSDHTPATAIDPEINRKGKVLKRLEIPVNENVNGG 554 (768)
Q Consensus 475 ~i~v~~~~d~~Gil~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~i~~~~~~~ 554 (768)
+|+|+|.+|.+|+|+|++.+ +.++++..++|+.. .+
T Consensus 503 ~i~v~f~id~~GiL~V~a~~------------------------------------------~~t~~~~~~~i~~~--~~ 538 (673)
T PLN03184 503 QIEVKFDIDANGILSVSATD------------------------------------------KGTGKKQDITITGA--ST 538 (673)
T ss_pred eEEEEEEeCCCCeEEEEEEe------------------------------------------cCCCeEEEEEeccc--cc
Confidence 99999999999999999863 22334445566543 46
Q ss_pred CCHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHHHHHHHhhHhhccCCHHHHHHHHHHHHHHHHHHhhcCCCccH
Q 004210 555 MTKTELSEAVEKEHQLVQQDLKMERTKDRKNALESYVYEMRDKISNIYRSFATESEREGISRNLRDTEEWLYEDGDDESE 634 (768)
Q Consensus 555 ls~~e~~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~t~~e~~~l~~~l~~~~~WL~~~g~~a~~ 634 (768)
||.++++++++++.+|..+|+.++++.++||+||+|||++|++|.+ +.+++++++|+++.+.|+++++|||+++ .
T Consensus 539 ls~eei~~~~~~~~~~~~~D~~~~~~~eakN~lE~~iy~~r~~l~e-~~~~~~~eer~~l~~~l~~~e~wL~~~d----~ 613 (673)
T PLN03184 539 LPKDEVERMVQEAEKFAKEDKEKRDAVDTKNQADSVVYQTEKQLKE-LGDKVPADVKEKVEAKLKELKDAIASGS----T 613 (673)
T ss_pred ccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHH-HhhhCCHHHHHHHHHHHHHHHHHHhcCC----H
Confidence 9999999999999999999999999999999999999999999974 8889999999999999999999999774 4
Q ss_pred HHHHHHHHHHHHhHhHHHHhh
Q 004210 635 NVYAERLEDLKKLVDPIEGRY 655 (768)
Q Consensus 635 ~~~~~kl~~L~~~~~pi~~R~ 655 (768)
+.+++++++|.+...++..++
T Consensus 614 ~~ik~~~~~l~~~l~~l~~~~ 634 (673)
T PLN03184 614 QKMKDAMAALNQEVMQIGQSL 634 (673)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 566677777777766666644
No 10
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=100.00 E-value=4.5e-97 Score=847.71 Aligned_cols=587 Identities=26% Similarity=0.460 Sum_probs=538.6
Q ss_pred eEEEEEcCccceEEEEEEcCCceEEEeCCCCCccceEEEEeeCCceeecHHHHhhhhhCCcchHhHHHHhcCCCCCChHH
Q 004210 2 SVVGFDIGNENCVIAAVKQGGMLDVLLNDESKRETPTVVSFSEKQRFLGSAGAASAMMNPKSTISQVKRLLGRKFREDDV 81 (768)
Q Consensus 2 ~viGID~Gtt~s~va~~~~~~~~~i~~n~~~~r~~Ps~v~~~~~~~~~G~~A~~~~~~~p~~~~~~~k~llg~~~~~~~~ 81 (768)
.+||||||||||+||++++|. ++++.|..|.|.+||+|+|.+++++||..|..+...+|.++++++||+||+.+.++.+
T Consensus 28 ~viGIDLGTTnS~vA~~~~~~-~~ii~n~~g~r~tPS~V~f~~~~~lvG~~Ak~~~~~~p~~ti~~~KRliG~~~~d~~v 106 (657)
T PTZ00186 28 DVIGVDLGTTYSCVATMDGDK-ARVLENSEGFRTTPSVVAFKGSEKLVGLAAKRQAITNPQSTFYAVKRLIGRRFEDEHI 106 (657)
T ss_pred eEEEEEeCcCeEEEEEEeCCc-eEEeecCCCCcccceEEEECCCCEEEcHHHHHhhhhCchhHHHHHHHHhccccccHHH
Confidence 489999999999999999887 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhccCCceeeecCCCCEEEEEEecCceeEecHHHHHHHHHHHHHHHHHhhccCCCCeEEEEeCCCCCHHHHHHHHHHH
Q 004210 82 QKDLKLFPFETCESHDGGILIMLEYLGETHKFTPVQILGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDVQRRAYLDAA 161 (768)
Q Consensus 82 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~el~a~~L~~l~~~a~~~~~~~~~~~VitVP~~~~~~qr~~l~~Aa 161 (768)
+...+.+||.++..++|...+.. +....++|+++++++|++|+..|+.++|.++.++|||||+||++.||+++++||
T Consensus 107 ~~~~~~~p~~vv~~~~~~~~i~~---~~~~~~speeisa~iL~~Lk~~Ae~~lg~~v~~aVITVPayF~~~qR~at~~Aa 183 (657)
T PTZ00186 107 QKDIKNVPYKIVRAGNGDAWVQD---GNGKQYSPSQIGAFVLEKMKETAENFLGHKVSNAVVTCPAYFNDAQRQATKDAG 183 (657)
T ss_pred HHhhccCcEEEEEcCCCceEEEe---CCCeEEcHHHHHHHHHHHHHHHHHHHhCCccceEEEEECCCCChHHHHHHHHHH
Confidence 99999999999988888766553 223679999999999999999999999999999999999999999999999999
Q ss_pred HHcCCcceEeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCCchhhHHHHHHH
Q 004210 162 TIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEVLSS 241 (768)
Q Consensus 162 ~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~d~~l~~ 241 (768)
++|||++++||+||+|||++|++.. ..+.++||||+||||||+||+++.++.++|+++.|+.+|||+|||..|++
T Consensus 184 ~~AGl~v~rlInEPtAAAlayg~~~-----~~~~~vlV~DlGGGT~DvSil~~~~g~~~V~at~Gd~~LGG~DfD~~l~~ 258 (657)
T PTZ00186 184 TIAGLNVIRVVNEPTAAALAYGMDK-----TKDSLIAVYDLGGGTFDISVLEIAGGVFEVKATNGDTHLGGEDFDLALSD 258 (657)
T ss_pred HHcCCCeEEEEcChHHHHHHHhccC-----CCCCEEEEEECCCCeEEEEEEEEeCCEEEEEEecCCCCCCchhHHHHHHH
Confidence 9999999999999999999999764 34679999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcccCccCChHHHHHHHHHHHHHhhhccCCCcccEEEeccccC----cceEEEecHHHHHHHHHHHHHHHHH
Q 004210 242 YFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANAEAPLNIECLMNE----KDVKGFIRREEFEKLSSSLLERMRI 317 (768)
Q Consensus 242 ~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~i~i~~l~~~----~d~~~~itr~~fe~~~~~~~~~i~~ 317 (768)
|+.++|..+++.++..+++++.+|+.+||++|+.||.+.++.+.++.+..+ .++.+.|||++|+++|+++++++..
T Consensus 259 ~~~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~i~~~~~g~~~~~~~ItR~efe~l~~~l~~r~~~ 338 (657)
T PTZ00186 259 YILEEFRKTSGIDLSKERMALQRVREAAEKAKCELSSAMETEVNLPFITANADGAQHIQMHISRSKFEGITQRLIERSIA 338 (657)
T ss_pred HHHHHHhhhcCCCcccCHHHHHHHHHHHHHHHHHhCCCCceEEEEeeeccCCCCCcceEEEecHHHHHHHHHHHHHHHHH
Confidence 999999999999998899999999999999999999999999988876542 3588999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCcCEEEEecCCCChHHHHHHHHhhcCCCCCCcCChhhHHHhHHHHHhhHhcCCccccceEEeeccc
Q 004210 318 PCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQCAMLSPQYCVREFEVQDSFP 397 (768)
Q Consensus 318 ~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~Gaa~~a~~ls~~~~~~~~~~~d~~~ 397 (768)
+++++|+++++.+.+|+.|+||||+||||.|+++|+++||.++..++|||+|||+|||++|+++++. ++++.+.|++|
T Consensus 339 ~v~~~L~~a~~~~~dId~VvLVGGssriP~V~~~l~~~fg~~~~~~~nPdeaVA~GAAi~a~~l~~~--~~~~~l~Dv~p 416 (657)
T PTZ00186 339 PCKQCMKDAGVELKEINDVVLVGGMTRMPKVVEEVKKFFQKDPFRGVNPDEAVALGAATLGGVLRGD--VKGLVLLDVTP 416 (657)
T ss_pred HHHHHHHHcCCChhhCCEEEEECCcccChHHHHHHHHHhCCCccccCCCchHHHHhHHHHHHHhccc--cCceEEEeecc
Confidence 9999999999999999999999999999999999999999888899999999999999999999985 57899999999
Q ss_pred eeeEEEecCCCcccceeEEEecCCCCCCceeEEEEeecCc----eEEEEEEeccccCCCCCCCcceeEEecCCCCCCCCc
Q 004210 398 FSIGFSSEKGPICTFSNGVLLPKGQPFPSVKILTLHRSNG----FQLQAFYADQNELPSVVSPQISSFMIGPFQTSHAET 473 (768)
Q Consensus 398 ~~i~i~~~~~~~~~~~~~~l~~~g~~~p~~k~~~f~~~~~----~~i~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~ 473 (768)
++||+++.++ .+.+|||||+++|++++.+|++..+ +.|.+++++. ....+|..||+|.|.++|+.+.|.
T Consensus 417 ~slgie~~~g-----~~~~iI~rnt~iP~~~~~~f~t~~dnQ~~v~i~i~qGe~--~~~~~n~~lg~~~l~~ip~~~~G~ 489 (657)
T PTZ00186 417 LSLGIETLGG-----VFTRMIPKNTTIPTKKSQTFSTAADNQTQVGIKVFQGER--EMAADNQMMGQFDLVGIPPAPRGV 489 (657)
T ss_pred ccccceecCC-----EEEEEEeCCCEeeEEEeeccccccCCCceEEEEEEEecc--cccccccccceEEEcCCCCCCCCC
Confidence 9999999877 7899999999999999999987533 6777776654 335789999999999999999999
Q ss_pred ceEEEEEEEcCCccEEEEeeeeeeeeeecccccccccccccccccccCCCCCCCCCCcccccccccceeeeeeeecccCC
Q 004210 474 ARVKVRVHLDLDGVVRVQSASLIEEFVDDSVRRESRDAHLTLEEDAKSDHTPATAIDPEINRKGKVLKRLEIPVNENVNG 553 (768)
Q Consensus 474 ~~i~v~~~~d~~Gil~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~i~~~~~~ 553 (768)
++|+|+|.+|.||+|+|++.+ +.+++...+.|... .
T Consensus 490 ~~I~Vtf~iD~nGiL~V~a~d------------------------------------------~~tg~~~~~~i~~~--~ 525 (657)
T PTZ00186 490 PQIEVTFDIDANGICHVTAKD------------------------------------------KATGKTQNITITAN--G 525 (657)
T ss_pred CcEEEEEEEcCCCEEEEEEEE------------------------------------------ccCCcEEEEEeccC--c
Confidence 999999999999999999963 44566667777754 3
Q ss_pred CCCHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHHHHHHHhhHhhccCCHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 004210 554 GMTKTELSEAVEKEHQLVQQDLKMERTKDRKNALESYVYEMRDKISNIYRSFATESEREGISRNLRDTEEWLYEDGDDES 633 (768)
Q Consensus 554 ~ls~~e~~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~t~~e~~~l~~~l~~~~~WL~~~g~~a~ 633 (768)
+|++++++++.+...++..+|...+++.+++|.+|+++|.++..+.+. ..+++++++.+.+.++..++||..+ +.+
T Consensus 526 ~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~--~~~ 601 (657)
T PTZ00186 526 GLSKEQIEQMIRDSEQHAEADRVKRELVEVRNNAETQLTTAERQLGEW--KYVSDAEKENVKTLVAELRKAMENP--NVA 601 (657)
T ss_pred cCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh--ccCCHHHHHHHHHHHHHHHHHHhcC--CcC
Confidence 699999999999999999999999999999999999999999999652 4679999999999999999999743 446
Q ss_pred HHHHHHHHHHHHHhHhHHHHh
Q 004210 634 ENVYAERLEDLKKLVDPIEGR 654 (768)
Q Consensus 634 ~~~~~~kl~~L~~~~~pi~~R 654 (768)
.+.+++++++|++...++..+
T Consensus 602 ~~~~~~~~~~l~~~~~~~~~~ 622 (657)
T PTZ00186 602 KDDLAAATDKLQKAVMECGRT 622 (657)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999988874
No 11
>CHL00094 dnaK heat shock protein 70
Probab=100.00 E-value=5.6e-97 Score=853.33 Aligned_cols=588 Identities=27% Similarity=0.462 Sum_probs=532.5
Q ss_pred eEEEEEcCccceEEEEEEcCCceEEEeCCCCCccceEEEEeeC-CceeecHHHHhhhhhCCcchHhHHHHhcCCCCCChH
Q 004210 2 SVVGFDIGNENCVIAAVKQGGMLDVLLNDESKRETPTVVSFSE-KQRFLGSAGAASAMMNPKSTISQVKRLLGRKFREDD 80 (768)
Q Consensus 2 ~viGID~Gtt~s~va~~~~~~~~~i~~n~~~~r~~Ps~v~~~~-~~~~~G~~A~~~~~~~p~~~~~~~k~llg~~~~~~~ 80 (768)
.+||||||||||+||++++|. +.++.|..|+|.+||+|+|.+ +++++|..|..+...+|.++++++||+||+.+.+
T Consensus 3 ~viGIDlGTt~s~va~~~~g~-~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~~-- 79 (621)
T CHL00094 3 KVVGIDLGTTNSVVAVMEGGK-PTVIPNAEGFRTTPSIVAYTKKGDLLVGQIAKRQAVINPENTFYSVKRFIGRKFSE-- 79 (621)
T ss_pred ceEEEEeCcccEEEEEEECCE-EEEEECCCCCcccceEEEEcCCCCEEECHHHHHhHHhCccceehhhHHhcCCChHH--
Confidence 599999999999999999998 889999999999999999975 4699999999999999999999999999998864
Q ss_pred HHhhhccCCceeeecCCCCEEEEEEecCceeEecHHHHHHHHHHHHHHHHHhhccCCCCeEEEEeCCCCCHHHHHHHHHH
Q 004210 81 VQKDLKLFPFETCESHDGGILIMLEYLGETHKFTPVQILGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDVQRRAYLDA 160 (768)
Q Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~el~a~~L~~l~~~a~~~~~~~~~~~VitVP~~~~~~qr~~l~~A 160 (768)
+....+.+||.++..++|.+.+.+...+ ..++|+++++++|++|++.|+.+++.++.++|||||+||++.||+++++|
T Consensus 80 ~~~~~~~~~~~v~~~~~g~i~~~~~~~~--~~~s~eei~a~iL~~l~~~ae~~lg~~v~~~VItVPa~f~~~qR~a~~~A 157 (621)
T CHL00094 80 ISEEAKQVSYKVKTDSNGNIKIECPALN--KDFSPEEISAQVLRKLVEDASKYLGETVTQAVITVPAYFNDSQRQATKDA 157 (621)
T ss_pred HHhhhhcCCeEEEECCCCCEEEEEecCC--eEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHH
Confidence 5556678999999888898888765544 57999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCcceEeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCCchhhHHHHHH
Q 004210 161 ATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEVLS 240 (768)
Q Consensus 161 a~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~d~~l~ 240 (768)
|++|||++++||+||+|||++|+... ..+.++|||||||||||+|++++.++.++|+++.|+.++||++||..|+
T Consensus 158 a~~AGl~v~~li~EptAAAlay~~~~-----~~~~~vlV~DlGgGT~DvSv~~~~~~~~~vla~~gd~~lGG~d~D~~l~ 232 (621)
T CHL00094 158 GKIAGLEVLRIINEPTAASLAYGLDK-----KNNETILVFDLGGGTFDVSILEVGDGVFEVLSTSGDTHLGGDDFDKKIV 232 (621)
T ss_pred HHHcCCceEEEeccHHHHHHHhcccc-----CCCCEEEEEEcCCCeEEEEEEEEcCCEEEEEEEecCCCcChHHHHHHHH
Confidence 99999999999999999999998764 3457899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcccCccCChHHHHHHHHHHHHHhhhccCCCcccEEEeccccC----cceEEEecHHHHHHHHHHHHHHHH
Q 004210 241 SYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANAEAPLNIECLMNE----KDVKGFIRREEFEKLSSSLLERMR 316 (768)
Q Consensus 241 ~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~i~i~~l~~~----~d~~~~itr~~fe~~~~~~~~~i~ 316 (768)
+|+.++|.++++.++..+++++.+|+.+||++|+.||.+.++.+.+++++.+ .++...|+|++|+++|+++++++.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~~~~ 312 (621)
T CHL00094 233 NWLIKEFKKKEGIDLSKDRQALQRLTEAAEKAKIELSNLTQTEINLPFITATQTGPKHIEKTLTRAKFEELCSDLINRCR 312 (621)
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeecccCCCCCeeEEEEEcHHHHHHHHHHHHHHHH
Confidence 9999999999999998999999999999999999999998888999877542 468889999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCcCEEEEecCCCChHHHHHHHHhhcCCCCCCcCChhhHHHhHHHHHhhHhcCCccccceEEeecc
Q 004210 317 IPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQCAMLSPQYCVREFEVQDSF 396 (768)
Q Consensus 317 ~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~Gaa~~a~~ls~~~~~~~~~~~d~~ 396 (768)
.+|+++|+++++.+.+|+.|+||||+||+|.|++.|+++||.++..++||++|||+|||++|+++++. ++++.+.|++
T Consensus 313 ~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg~~~~~~~~pdeava~GAA~~aa~ls~~--~~~~~~~d~~ 390 (621)
T CHL00094 313 IPVENALKDAKLDKSDIDEVVLVGGSTRIPAIQELVKKLLGKKPNQSVNPDEVVAIGAAVQAGVLAGE--VKDILLLDVT 390 (621)
T ss_pred HHHHHHHHHcCCChhhCcEEEEECCccCChHHHHHHHHHhCCCcCcCCCchhHHHhhhHHHHHHhcCC--ccceeeeeee
Confidence 99999999999999999999999999999999999999999888899999999999999999999884 6789999999
Q ss_pred ceeeEEEecCCCcccceeEEEecCCCCCCceeEEEEeec--Cc--eEEEEEEeccccCCCCCCCcceeEEecCCCCCCCC
Q 004210 397 PFSIGFSSEKGPICTFSNGVLLPKGQPFPSVKILTLHRS--NG--FQLQAFYADQNELPSVVSPQISSFMIGPFQTSHAE 472 (768)
Q Consensus 397 ~~~i~i~~~~~~~~~~~~~~l~~~g~~~p~~k~~~f~~~--~~--~~i~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~ 472 (768)
|++||+++.++ .+.+|||+|+++|++++.+|.+. ++ +.+.++++ ++....+|..||+|.|.++++.+.|
T Consensus 391 ~~~lgi~~~~~-----~~~~ii~~~t~iP~~~~~~~~~~~~~q~~v~i~i~~g--e~~~~~~n~~lg~~~i~~~~~~~~g 463 (621)
T CHL00094 391 PLSLGVETLGG-----VMTKIIPRNTTIPTKKSEVFSTAVDNQTNVEIHVLQG--ERELAKDNKSLGTFRLDGIPPAPRG 463 (621)
T ss_pred ceeeeeeccCC-----EEEEEEeCCCccceeeeEEEEeccCCCcEEEEEEEee--ccccCCCCCEEEEEEEeCCCCCCCC
Confidence 99999999876 79999999999999999999874 34 44455444 3334578999999999999998888
Q ss_pred cceEEEEEEEcCCccEEEEeeeeeeeeeecccccccccccccccccccCCCCCCCCCCcccccccccceeeeeeeecccC
Q 004210 473 TARVKVRVHLDLDGVVRVQSASLIEEFVDDSVRRESRDAHLTLEEDAKSDHTPATAIDPEINRKGKVLKRLEIPVNENVN 552 (768)
Q Consensus 473 ~~~i~v~~~~d~~Gil~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~i~~~~~ 552 (768)
.++|+|+|++|.+|+|+|++.+ +.+++...++|...
T Consensus 464 ~~~i~v~f~id~~Gil~v~~~~------------------------------------------~~t~~~~~~~i~~~-- 499 (621)
T CHL00094 464 VPQIEVTFDIDANGILSVTAKD------------------------------------------KGTGKEQSITIQGA-- 499 (621)
T ss_pred CCcEEEEEEECCCCeEEEEEee------------------------------------------ccCCceeeeeeccc--
Confidence 8899999999999999999863 12233344555533
Q ss_pred CCCCHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHHHHHHHhhHhhccCCHHHHHHHHHHHHHHHHHHhhcCCCc
Q 004210 553 GGMTKTELSEAVEKEHQLVQQDLKMERTKDRKNALESYVYEMRDKISNIYRSFATESEREGISRNLRDTEEWLYEDGDDE 632 (768)
Q Consensus 553 ~~ls~~e~~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~t~~e~~~l~~~l~~~~~WL~~~g~~a 632 (768)
.+|+.++++++++++.+|..+|+..+++.++||+||+|||.+|++|++ +..++++++|+++.+.|+++++|||+++
T Consensus 500 ~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~le~~i~~~~~~l~~-~~~~~~~~~~~~~~~~l~~~~~wl~~~~--- 575 (621)
T CHL00094 500 STLPKDEVERMVKEAEKNAAEDKEKREKIDLKNQAESLCYQAEKQLKE-LKDKISEEKKEKIENLIKKLRQALQNDN--- 575 (621)
T ss_pred hhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHhHHHHHHHHHHHHH-HhccCCHHHHHHHHHHHHHHHHHHhcCC---
Confidence 469999999999999999999999999999999999999999999975 8899999999999999999999999874
Q ss_pred cHHHHHHHHHHHHHhHhHHHHhhHh
Q 004210 633 SENVYAERLEDLKKLVDPIEGRYKD 657 (768)
Q Consensus 633 ~~~~~~~kl~~L~~~~~pi~~R~~e 657 (768)
.++|++++++|+++.+|+..++..
T Consensus 576 -~~~~~~~~~~l~~~~~~~~~kl~~ 599 (621)
T CHL00094 576 -YESIKSLLEELQKALMEIGKEVYS 599 (621)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 379999999999999999986533
No 12
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=100.00 E-value=1.9e-96 Score=849.96 Aligned_cols=584 Identities=27% Similarity=0.490 Sum_probs=529.2
Q ss_pred eEEEEEcCccceEEEEEEcCCceEEEeCCCCCccceEEEEeeCC-ceeecHHHHhhhhhCCcchHhHHHHhcCCCCCChH
Q 004210 2 SVVGFDIGNENCVIAAVKQGGMLDVLLNDESKRETPTVVSFSEK-QRFLGSAGAASAMMNPKSTISQVKRLLGRKFREDD 80 (768)
Q Consensus 2 ~viGID~Gtt~s~va~~~~~~~~~i~~n~~~~r~~Ps~v~~~~~-~~~~G~~A~~~~~~~p~~~~~~~k~llg~~~~~~~ 80 (768)
.|||||||||||+||++++|. +.++.|..|+|.+||+|+|.++ ++++|..|..+..++|.++++++||+||+.+ +.
T Consensus 1 ~viGIDlGtt~s~va~~~~g~-~~ii~n~~~~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~~--~~ 77 (595)
T TIGR02350 1 KIIGIDLGTTNSCVAVMEGGE-PVVIPNAEGARTTPSVVAFTKNGERLVGQPAKRQAVTNPENTIYSIKRFMGRRF--DE 77 (595)
T ss_pred CEEEEEeCcccEEEEEEECCE-EEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhhhhCchhhhHHHHHHhCCCc--hH
Confidence 379999999999999999998 8899999999999999999865 7999999999999999999999999999988 34
Q ss_pred HHhhhccCCceeeecCCCCEEEEEEecCceeEecHHHHHHHHHHHHHHHHHhhccCCCCeEEEEeCCCCCHHHHHHHHHH
Q 004210 81 VQKDLKLFPFETCESHDGGILIMLEYLGETHKFTPVQILGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDVQRRAYLDA 160 (768)
Q Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~el~a~~L~~l~~~a~~~~~~~~~~~VitVP~~~~~~qr~~l~~A 160 (768)
++...+++||. +..++|.+.+.+. + ..++|+++++++|++|+..++.+++.++.++|||||+||++.||+++++|
T Consensus 78 ~~~~~~~~~~~-v~~~~~~~~~~v~--~--~~~~peel~a~~L~~l~~~a~~~~~~~v~~~VItVPa~f~~~qR~a~~~A 152 (595)
T TIGR02350 78 VTEEAKRVPYK-VVGDGGDVRVKVD--G--KEYTPQEISAMILQKLKKDAEAYLGEKVTEAVITVPAYFNDAQRQATKDA 152 (595)
T ss_pred HHHHhhcCCee-EEcCCCceEEEEC--C--EEecHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHH
Confidence 67777899999 5566788777764 3 57999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCcceEeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCCchhhHHHHHH
Q 004210 161 ATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEVLS 240 (768)
Q Consensus 161 a~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~d~~l~ 240 (768)
|++|||++++||+||+|||++|++.+. ..+.++|||||||||||+|++++.++.++|+++.|+..+||++||..|+
T Consensus 153 a~~AGl~v~~li~EptAAAl~y~~~~~----~~~~~vlV~D~Gggt~dvsv~~~~~~~~~v~~~~gd~~lGG~d~D~~l~ 228 (595)
T TIGR02350 153 GKIAGLEVLRIINEPTAAALAYGLDKS----KKDEKILVFDLGGGTFDVSILEIGDGVFEVLSTAGDTHLGGDDFDQRII 228 (595)
T ss_pred HHHcCCceEEEecchHHHHHHHhhccc----CCCcEEEEEECCCCeEEEEEEEecCCeEEEEEecCCcccCchhHHHHHH
Confidence 999999999999999999999987652 3468999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcccCccCChHHHHHHHHHHHHHhhhccCCCcccEEEeccccC----cceEEEecHHHHHHHHHHHHHHHH
Q 004210 241 SYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANAEAPLNIECLMNE----KDVKGFIRREEFEKLSSSLLERMR 316 (768)
Q Consensus 241 ~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~i~i~~l~~~----~d~~~~itr~~fe~~~~~~~~~i~ 316 (768)
+|+.++|..+++.++..+++++.||+.+||++|+.||.+.++.+.+++++.+ .++.+.|||++|+++|+|+++++.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~l~~~~~ 308 (595)
T TIGR02350 229 DWLADEFKKEEGIDLSKDKMALQRLKEAAEKAKIELSSVLSTEINLPFITADASGPKHLEMTLTRAKFEELTADLVERTK 308 (595)
T ss_pred HHHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEeeecccCCCCCeeEEEEEeHHHHHHHHHHHHHHHH
Confidence 9999999999999998999999999999999999999999999999877543 578899999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCcCEEEEecCCCChHHHHHHHHhhcCCCCCCcCChhhHHHhHHHHHhhHhcCCccccceEEeecc
Q 004210 317 IPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQCAMLSPQYCVREFEVQDSF 396 (768)
Q Consensus 317 ~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~Gaa~~a~~ls~~~~~~~~~~~d~~ 396 (768)
.+|+++|+++++.+.+|+.|+||||+||+|+|++.|+++||.++..++||++|||+|||++|+++++. ++++.+.|++
T Consensus 309 ~~i~~~l~~a~~~~~~i~~V~LvGGssriP~v~~~i~~~f~~~~~~~~~pdeava~GAa~~aa~l~~~--~~~~~~~d~~ 386 (595)
T TIGR02350 309 EPVRQALKDAGLSASDIDEVILVGGSTRIPAVQELVKDFFGKEPNKSVNPDEVVAIGAAIQGGVLKGD--VKDVLLLDVT 386 (595)
T ss_pred HHHHHHHHHcCCCHhHCcEEEEECCcccChHHHHHHHHHhCCcccCCcCcHHHHHHHHHHHHHHhcCC--cccceeeecc
Confidence 99999999999999999999999999999999999999999888999999999999999999999986 6789999999
Q ss_pred ceeeEEEecCCCcccceeEEEecCCCCCCceeEEEEeecCc----eEEEEEEeccccCCCCCCCcceeEEecCCCCCCCC
Q 004210 397 PFSIGFSSEKGPICTFSNGVLLPKGQPFPSVKILTLHRSNG----FQLQAFYADQNELPSVVSPQISSFMIGPFQTSHAE 472 (768)
Q Consensus 397 ~~~i~i~~~~~~~~~~~~~~l~~~g~~~p~~k~~~f~~~~~----~~i~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~ 472 (768)
|++||+++.++ .+.+||++|+++|++++.+|.+..+ +.+.++++ ++....+|..||+|.|+++++.+.+
T Consensus 387 ~~~igi~~~~~-----~~~~ii~~~~~iP~~~~~~~~~~~d~q~~v~i~i~~g--e~~~~~~~~~lg~~~i~~~~~~~~g 459 (595)
T TIGR02350 387 PLSLGIETLGG-----VMTKLIERNTTIPTKKSQVFSTAADNQPAVDIHVLQG--ERPMAADNKSLGRFELTGIPPAPRG 459 (595)
T ss_pred cceeEEEecCC-----ceEEEEeCCCcCCccceEeeeccCCCCcEEEEEEEee--cccccccCcEeEEEEECCCCCCCCC
Confidence 99999999876 7889999999999999999987543 34555444 3344578899999999999988888
Q ss_pred cceEEEEEEEcCCccEEEEeeeeeeeeeecccccccccccccccccccCCCCCCCCCCcccccccccceeeeeeeecccC
Q 004210 473 TARVKVRVHLDLDGVVRVQSASLIEEFVDDSVRRESRDAHLTLEEDAKSDHTPATAIDPEINRKGKVLKRLEIPVNENVN 552 (768)
Q Consensus 473 ~~~i~v~~~~d~~Gil~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~i~~~~~ 552 (768)
.++|+|+|.+|.+|+|+|++.+ ..+++...+.++..
T Consensus 460 ~~~i~v~f~~d~~G~l~v~~~~------------------------------------------~~~~~~~~~~i~~~-- 495 (595)
T TIGR02350 460 VPQIEVTFDIDANGILHVSAKD------------------------------------------KGTGKEQSITITAS-- 495 (595)
T ss_pred CceEEEEEEEcCCCeEEEEEEE------------------------------------------ccCCceEEEEeccc--
Confidence 8899999999999999999863 11233344555544
Q ss_pred CCCCHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHHHHHHHhhHhhccCCHHHHHHHHHHHHHHHHHHhhcCCCc
Q 004210 553 GGMTKTELSEAVEKEHQLVQQDLKMERTKDRKNALESYVYEMRDKISNIYRSFATESEREGISRNLRDTEEWLYEDGDDE 632 (768)
Q Consensus 553 ~~ls~~e~~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~t~~e~~~l~~~l~~~~~WL~~~g~~a 632 (768)
.+||.++++++.+++.+|..+|+.++++.++||+||+|||++|++|++ +..++++++|+++.+.++++++|||++
T Consensus 496 ~~ls~~~~~~~~~~~~~~~~~D~~~~~~~e~kn~lEs~iy~~r~~l~~-~~~~~~~~e~~~l~~~l~~~~~wL~~~---- 570 (595)
T TIGR02350 496 SGLSEEEIERMVKEAEANAEEDKKRKEEIEARNNADSLAYQAEKTLKE-AGDKLPAEEKEKIEKAVAELKEALKGE---- 570 (595)
T ss_pred cccCHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHH-hhccCCHHHHHHHHHHHHHHHHHHhcC----
Confidence 369999999999999999999999999999999999999999999975 688999999999999999999999975
Q ss_pred cHHHHHHHHHHHHHhHhHHHHhh
Q 004210 633 SENVYAERLEDLKKLVDPIEGRY 655 (768)
Q Consensus 633 ~~~~~~~kl~~L~~~~~pi~~R~ 655 (768)
+..+|++++++|+++.+++..++
T Consensus 571 d~~~i~~~~~~l~~~~~~~~~~~ 593 (595)
T TIGR02350 571 DVEEIKAKTEELQQALQKLAEAM 593 (595)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999988653
No 13
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=100.00 E-value=9.4e-94 Score=820.98 Aligned_cols=579 Identities=26% Similarity=0.424 Sum_probs=520.6
Q ss_pred EEEEEcCccceEEEEEEcCCceEEEeCCCCCccceEEEEeeCC-ceeecHHHHhhhhhCCcchHhHHHHhcCCCCCChHH
Q 004210 3 VVGFDIGNENCVIAAVKQGGMLDVLLNDESKRETPTVVSFSEK-QRFLGSAGAASAMMNPKSTISQVKRLLGRKFREDDV 81 (768)
Q Consensus 3 viGID~Gtt~s~va~~~~~~~~~i~~n~~~~r~~Ps~v~~~~~-~~~~G~~A~~~~~~~p~~~~~~~k~llg~~~~~~~~ 81 (768)
+||||||||||+||++++|. ++++.|..|+|.+||+|+|.++ +++||..|..+..++|.++++++|||||+.+.++..
T Consensus 1 ~iGIDlGTtns~va~~~~g~-~~ii~n~~g~~~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~Kr~iG~~~~d~~~ 79 (599)
T TIGR01991 1 AVGIDLGTTNSLVASVRSGV-PEVLPDAEGRVLLPSVVRYLKDGGVEVGKEALAAAAEDPKNTISSVKRLMGRSIEDIKT 79 (599)
T ss_pred CEEEEEccccEEEEEEECCE-EEEEECCCCCcccCeEEEEeCCCCEEecHHHHHhhhhChhhhHHHHHHHhCCCccchhh
Confidence 58999999999999999988 9999999999999999999865 789999999999999999999999999999876432
Q ss_pred HhhhccCCceeeecCCCCEEEEEEecCceeEecHHHHHHHHHHHHHHHHHhhccCCCCeEEEEeCCCCCHHHHHHHHHHH
Q 004210 82 QKDLKLFPFETCESHDGGILIMLEYLGETHKFTPVQILGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDVQRRAYLDAA 161 (768)
Q Consensus 82 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~el~a~~L~~l~~~a~~~~~~~~~~~VitVP~~~~~~qr~~l~~Aa 161 (768)
.+.+||.++..++|.+.+.+.. ..++|+++++++|++|++.|+.+++.++.++|||||+||++.||+++++||
T Consensus 80 ---~~~~~~~~~~~~~~~~~~~~~~----~~~~p~ei~a~iL~~lk~~a~~~lg~~v~~~VItVPa~f~~~qR~a~~~Aa 152 (599)
T TIGR01991 80 ---FSILPYRFVDGPGEMVRLRTVQ----GTVTPVEVSAEILKKLKQRAEESLGGDLVGAVITVPAYFDDAQRQATKDAA 152 (599)
T ss_pred ---cccCCEEEEEcCCCceEEEeCC----CEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHH
Confidence 5678999988888888887653 268999999999999999999999999999999999999999999999999
Q ss_pred HHcCCcceEeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCCchhhHHHHHHH
Q 004210 162 TIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEVLSS 241 (768)
Q Consensus 162 ~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~d~~l~~ 241 (768)
++|||++++||+||+|||++|++.. ..+.++|||||||||||+|++++.++.++|+++.|+.++||++||..|++
T Consensus 153 ~~AGl~v~~li~EPtAAAlay~~~~-----~~~~~vlV~DlGgGT~DvSi~~~~~~~~~vla~~gd~~lGG~d~D~~l~~ 227 (599)
T TIGR01991 153 RLAGLNVLRLLNEPTAAAVAYGLDK-----ASEGIYAVYDLGGGTFDVSILKLTKGVFEVLATGGDSALGGDDFDHALAK 227 (599)
T ss_pred HHcCCCceEEecCHHHHHHHHhhcc-----CCCCEEEEEEcCCCeEEEEEEEEcCCeEEEEEEcCCCCCCHHHHHHHHHH
Confidence 9999999999999999999999765 24678999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcccCccCChHHHHHHHHHHHHHhhhccCCCcccEEEeccccCcceEEEecHHHHHHHHHHHHHHHHHHHHH
Q 004210 242 YFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANAEAPLNIECLMNEKDVKGFIRREEFEKLSSSLLERMRIPCQK 321 (768)
Q Consensus 242 ~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~i~i~~l~~~~d~~~~itr~~fe~~~~~~~~~i~~~i~~ 321 (768)
|+.+++ +.+...+++.+.+|+.+||++|+.||.+..+.+.++. ++.++.++|||++|+++|+++++++..++++
T Consensus 228 ~l~~~~----~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~--~g~~~~~~itr~efe~l~~~ll~~i~~~i~~ 301 (599)
T TIGR01991 228 WILKQL----GISADLNPEDQRLLLQAARAAKEALTDAESVEVDFTL--DGKDFKGKLTRDEFEALIQPLVQKTLSICRR 301 (599)
T ss_pred HHHHhh----CCCCCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEEE--CCcEEEEEEeHHHHHHHHHHHHHHHHHHHHH
Confidence 999654 5555678999999999999999999999888888874 7889999999999999999999999999999
Q ss_pred HHHhcCCCCCCcCEEEEecCCCChHHHHHHHHhhcCCCCCCcCChhhHHHhHHHHHhhHhcCCccccceEEeeccceeeE
Q 004210 322 ALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQCAMLSPQYCVREFEVQDSFPFSIG 401 (768)
Q Consensus 322 ~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~Gaa~~a~~ls~~~~~~~~~~~d~~~~~i~ 401 (768)
+|+++++.+.+|+.|+||||+||+|+|+++|+++||..+..++||++|||+|||++|+++++.++.+++.+.|++|++||
T Consensus 302 ~L~~a~~~~~~id~ViLvGGssriP~V~~~l~~~f~~~~~~~~npdeaVA~GAai~a~~l~~~~~~~~~~l~dv~p~slg 381 (599)
T TIGR01991 302 ALRDAGLSVEEIKGVVLVGGSTRMPLVRRAVAELFGQEPLTDIDPDQVVALGAAIQADLLAGNRIGNDLLLLDVTPLSLG 381 (599)
T ss_pred HHHHcCCChhhCCEEEEECCcCCChHHHHHHHHHhCCCCCCCCCCcHHHHHHHHHHHHHhccccccCceEEEEeeeeeeE
Confidence 99999999999999999999999999999999999988888999999999999999999999888889999999999999
Q ss_pred EEecCCCcccceeEEEecCCCCCCceeEEEEee--cCceEEEEEEeccccCCCCCCCcceeEEecCCCCCCCCcceEEEE
Q 004210 402 FSSEKGPICTFSNGVLLPKGQPFPSVKILTLHR--SNGFQLQAFYADQNELPSVVSPQISSFMIGPFQTSHAETARVKVR 479 (768)
Q Consensus 402 i~~~~~~~~~~~~~~l~~~g~~~p~~k~~~f~~--~~~~~i~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~i~v~ 479 (768)
+++.++ .+.+|||+|+++|++++..|++ +++..+.+.+.++++....+|..||+|.|.++++.+.|.++|+|+
T Consensus 382 i~~~~g-----~~~~ii~rnt~iP~~~~~~~~t~~d~q~~v~i~i~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~ 456 (599)
T TIGR01991 382 IETMGG-----LVEKIIPRNTPIPVARAQEFTTYKDGQTAMVIHVVQGERELVEDCRSLARFELRGIPPMVAGAARIRVT 456 (599)
T ss_pred EEecCC-----EEEEEEeCCCcCCccceEEEEEccCCCeEEEEEEEeecccccccCceEEEEEEcCCCCCCCCCCcEEEE
Confidence 999877 7899999999999999888875 445444443333344334789999999999999998888999999
Q ss_pred EEEcCCccEEEEeeeeeeeeeecccccccccccccccccccCCCCCCCCCCcccccccccceeeeeeeecccCCCCCHHH
Q 004210 480 VHLDLDGVVRVQSASLIEEFVDDSVRRESRDAHLTLEEDAKSDHTPATAIDPEINRKGKVLKRLEIPVNENVNGGMTKTE 559 (768)
Q Consensus 480 ~~~d~~Gil~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~i~~~~~~~ls~~e 559 (768)
|++|.||+|+|++.+ +.++++..+.|... .+|+.++
T Consensus 457 f~id~~gil~V~a~~------------------------------------------~~t~~~~~~~i~~~--~~l~~~~ 492 (599)
T TIGR01991 457 FQVDADGLLTVSAQE------------------------------------------QSTGVEQSIQVKPS--YGLSDEE 492 (599)
T ss_pred EEECCCCeEEEEEEE------------------------------------------CCCCcEEEEecccc--cCCCHHH
Confidence 999999999999863 22333444555543 3699999
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHHHHHHHhhHhhccCCHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHH
Q 004210 560 LSEAVEKEHQLVQQDLKMERTKDRKNALESYVYEMRDKISNIYRSFATESEREGISRNLRDTEEWLYEDGDDESENVYAE 639 (768)
Q Consensus 560 ~~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~t~~e~~~l~~~l~~~~~WL~~~g~~a~~~~~~~ 639 (768)
++++.+++.++..+|...+++.+++|++|+|+|.++..+.+ +..++++++|+++...+++.++||+++ +...+++
T Consensus 493 i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~l~~~----~~~~~~~ 567 (599)
T TIGR01991 493 IERMLKDSFKHAEEDMYARALAEQKVEAERILEALQAALAA-DGDLLSEDERAAIDAAMEALQKALQGD----DADAIKA 567 (599)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-hhccCCHHHHHHHHHHHHHHHHHHhcC----CHHHHHH
Confidence 99999999999999999999999999999999999998864 556899999999999999999999975 3578899
Q ss_pred HHHHHHHhHhHHHHh
Q 004210 640 RLEDLKKLVDPIEGR 654 (768)
Q Consensus 640 kl~~L~~~~~pi~~R 654 (768)
++++|+++..++..+
T Consensus 568 ~~~~l~~~~~~~~~~ 582 (599)
T TIGR01991 568 AIEALEEATDNFAAR 582 (599)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999888863
No 14
>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.6e-96 Score=797.44 Aligned_cols=601 Identities=30% Similarity=0.520 Sum_probs=563.5
Q ss_pred CeEEEEEcCccceEEEEEEcCCceEEEeCCCCCccceEEEEeeCCceeecHHHHhhhhhCCcchHhHHHHhcCCCCCChH
Q 004210 1 MSVVGFDIGNENCVIAAVKQGGMLDVLLNDESKRETPTVVSFSEKQRFLGSAGAASAMMNPKSTISQVKRLLGRKFREDD 80 (768)
Q Consensus 1 m~viGID~Gtt~s~va~~~~~~~~~i~~n~~~~r~~Ps~v~~~~~~~~~G~~A~~~~~~~p~~~~~~~k~llg~~~~~~~ 80 (768)
|.++|||||||+++|+++..+. ++++.|+.|+|.+||+|+|.++++++|..|..+..++|.++++++||++|+.++++.
T Consensus 7 ~~aiGIdlGtT~s~v~v~~~~~-v~iian~~g~rttPs~vaf~~~e~~vg~~a~~qv~~np~ntv~~~krliGr~f~d~~ 85 (620)
T KOG0101|consen 7 SVAIGIDLGTTYSCVGVYQSGK-VEIIANDQGNRTTPSVVAFTDTERLIGDAAKNQVARNPDNTVFDAKRLIGRFFDDPE 85 (620)
T ss_pred cceeeEeccCccceeeeEcCCc-ceeeeccccCccccceeeecccccchhhhhhhhhhcCCcceeeehhhhcCccccchh
Confidence 4689999999999999999777 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhccCCceeeecCCCCEEEEEEecCceeEecHHHHHHHHHHHHHHHHHhhccCCCCeEEEEeCCCCCHHHHHHHHHH
Q 004210 81 VQKDLKLFPFETCESHDGGILIMLEYLGETHKFTPVQILGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDVQRRAYLDA 160 (768)
Q Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~el~a~~L~~l~~~a~~~~~~~~~~~VitVP~~~~~~qr~~l~~A 160 (768)
++..+++|||.+....++.+.+.+.+.++.+.|+|+++.+++|.+++..++.++|..+.++|+|||+||++.||+++.+|
T Consensus 86 v~~~~k~~pf~V~~~~~~~~~i~~~~~~~~~~f~peeiss~~L~klke~Ae~~Lg~~v~~aviTVPa~F~~~Qr~at~~A 165 (620)
T KOG0101|consen 86 VQSDMKLWPFKVISDQGGKPKIQVTYKGETKSFNPEEISSMVLTKLKETAEAYLGKTVKKAVVTVPAYFNDSQRAATKDA 165 (620)
T ss_pred hHhHhhcCCcccccccCCcceEEecccccceeeeeeeeeehhccccHHHHHHHhcCceeeEEEEecCCcCHHHHHHHHHH
Confidence 99999999999997777789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCcceEeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCCchhhHHHHHH
Q 004210 161 ATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEVLS 240 (768)
Q Consensus 161 a~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~d~~l~ 240 (768)
+.+|||+++++|+||+|||++|++.+. .....+|||+|+||||||+|++.+.+|.+.|+++.++.++||.+||+.|+
T Consensus 166 ~~iaGl~vlrii~EPtAaalAygl~k~---~~~~~~VlI~DlGggtfdvs~l~i~gG~~~vkat~gd~~lGGedf~~~l~ 242 (620)
T KOG0101|consen 166 ALIAGLNVLRIINEPTAAALAYGLDKK---VLGERNVLIFDLGGGTFDVSVLSLEGGIFEVKATAGDTHLGGEDFDNKLV 242 (620)
T ss_pred HHhcCCceeeeecchHHHHHHhhcccc---ccceeeEEEEEcCCCceeeeeEEeccchhhhhhhcccccccchhhhHHHH
Confidence 999999999999999999999997764 25678899999999999999999999988999999999999999999999
Q ss_pred HHHHHHHhhhcccCccCChHHHHHHHHHHHHHhhhccCCCcccEEEeccccCcceEEEecHHHHHHHHHHHHHHHHHHHH
Q 004210 241 SYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANAEAPLNIECLMNEKDVKGFIRREEFEKLSSSLLERMRIPCQ 320 (768)
Q Consensus 241 ~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~i~i~~l~~~~d~~~~itr~~fe~~~~~~~~~i~~~i~ 320 (768)
+|+..+|.++++.++..|++++.||+.+||++|+.||....+.+.|++|+++.|+...|+|.+|+.+|.+++.++..++.
T Consensus 243 ~h~~~ef~~k~~~d~~~n~r~l~rLR~a~E~aKr~LS~~~~~~i~vdsL~~g~d~~~~itrarfe~l~~dlf~~~~~~v~ 322 (620)
T KOG0101|consen 243 NHFAAEFKRKAGKDIGGNARALRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRSTLEPVE 322 (620)
T ss_pred HHHHHHHHHhhccccccchHHHHHHHHHHHHHHhhhcccccceeccchhhccccccceeehhhhhhhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCcCEEEEecCCCChHHHHHHHHhhc-CCCCCCcCChhhHHHhHHHHHhhHhcCC--ccccceEEeeccc
Q 004210 321 KALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLF-NREPGRTINASECVARGCALQCAMLSPQ--YCVREFEVQDSFP 397 (768)
Q Consensus 321 ~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~f-g~~v~~~~n~~eava~Gaa~~a~~ls~~--~~~~~~~~~d~~~ 397 (768)
.+|+++++...+|+.|+||||++|+|.+|..++++| |+.+..++||||+||+|||++||.+++. ..+.++.+.|+.|
T Consensus 323 ~~L~da~~dk~~i~~vvlVGGstriPk~~~ll~d~f~~k~~~~sinpDeavA~GAavqaa~~~g~~~~~~~~l~lid~~p 402 (620)
T KOG0101|consen 323 KALKDAKLDKSDIDEVVLVGGSTRIPKVQKLLEDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSLNIQDLLLIDVAP 402 (620)
T ss_pred HHHHhhccCccCCceeEEecCcccchHHHHHHHHHhcccccccCCCHHHHHHhhHHHHhhhccCCccccccceeeeeccc
Confidence 999999999999999999999999999999999999 5888999999999999999999999875 2347899999999
Q ss_pred eeeEEEecCCCcccceeEEEecCCCCCCceeEEEEeecCc----eEEEEEEeccccCCCCCCCcceeEEecCCCCCCCCc
Q 004210 398 FSIGFSSEKGPICTFSNGVLLPKGQPFPSVKILTLHRSNG----FQLQAFYADQNELPSVVSPQISSFMIGPFQTSHAET 473 (768)
Q Consensus 398 ~~i~i~~~~~~~~~~~~~~l~~~g~~~p~~k~~~f~~~~~----~~i~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~ 473 (768)
.++||+..++ .+.++|++||.+|++++.+|++..| +.|.+|.+ ++....+|..+|.|.++|+|+++.|.
T Consensus 403 l~~gve~a~~-----~~~~~i~~~t~~P~~k~~~ftt~~dnQp~V~I~VyEg--er~~~kdn~~lg~feL~gippaprgv 475 (620)
T KOG0101|consen 403 LSLGVETAGG-----VFTVLIPRNTSIPTKKTQTFTTYSDNQPGVLIQVYEG--ERAMTKDNNLLGKFELTGIPPAPRGV 475 (620)
T ss_pred ccccccccCC-----cceeeeecccccceeeeeeeeeecCCCCceeEEEEec--cccccccccccceeeecCCCccccCC
Confidence 9999999987 8999999999999999988887544 55666443 46667999999999999999999999
Q ss_pred ceEEEEEEEcCCccEEEEeeeeeeeeeecccccccccccccccccccCCCCCCCCCCcccccccccceeeeeeeecccCC
Q 004210 474 ARVKVRVHLDLDGVVRVQSASLIEEFVDDSVRRESRDAHLTLEEDAKSDHTPATAIDPEINRKGKVLKRLEIPVNENVNG 553 (768)
Q Consensus 474 ~~i~v~~~~d~~Gil~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~i~~~~~~ 553 (768)
+.|+++|.+|.+|+|.|++.+ +.+++...+.|++.. +
T Consensus 476 p~IevtfdiD~ngiL~Vta~d------------------------------------------~stgK~~~i~i~n~~-g 512 (620)
T KOG0101|consen 476 PQIEVTFDIDANGILNVTAVD------------------------------------------KSTGKENKITITNDK-G 512 (620)
T ss_pred cceeEEEecCCCcEEEEeecc------------------------------------------ccCCccceEEEeccc-c
Confidence 999999999999999999973 556666777787776 7
Q ss_pred CCCHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHHHHHHHhhHhhccCCHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 004210 554 GMTKTELSEAVEKEHQLVQQDLKMERTKDRKNALESYVYEMRDKISNIYRSFATESEREGISRNLRDTEEWLYEDGDDES 633 (768)
Q Consensus 554 ~ls~~e~~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~t~~e~~~l~~~l~~~~~WL~~~g~~a~ 633 (768)
.||.++++++....+.+..+|...+.+..++|.||+|+|.++..+++.- ..++++.+.++..+++++..||..+. .+.
T Consensus 513 rls~~~Ierm~~ea~~~~~~d~~~~~~v~~~~~le~~~f~~~~~~~~~~-~~i~~~~~~~~~~~~~~~i~wl~~~~-~~~ 590 (620)
T KOG0101|consen 513 RLSKEEIERMVQEAEKYKAEDEKQKDKVAAKNSLESYAFNMKATVEDEK-GKINEEDKQKILDKCNEVINWLDKNQ-LAE 590 (620)
T ss_pred eeehhhhhhhhhhhhhccccCHHHHHHHHHHhhHHHHHHhhhhhhhhhc-cccChhhhhhHHHHHHHHHHHhhhcc-ccc
Confidence 8999999999999999999999999999999999999999999998643 78999999999999999999999885 455
Q ss_pred HHHHHHHHHHHHHhHhHHHHhhHh
Q 004210 634 ENVYAERLEDLKKLVDPIEGRYKD 657 (768)
Q Consensus 634 ~~~~~~kl~~L~~~~~pi~~R~~e 657 (768)
+++|+.|+.+|+..+.||..++..
T Consensus 591 ~~e~e~k~~el~~~~~p~~~~~~~ 614 (620)
T KOG0101|consen 591 KEEFEHKQKELELVCNPIISKLYQ 614 (620)
T ss_pred ccHHHHHHHHHHhhccHHHHhhhc
Confidence 999999999999999999998654
No 15
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=100.00 E-value=4.4e-93 Score=831.06 Aligned_cols=594 Identities=38% Similarity=0.657 Sum_probs=535.7
Q ss_pred EEEEEcCccceEEEEEEcCCceEEEeCCCCCccceEEEEeeCCceeecHHHHhhhhhCCcchHhHHHHhcCCCCCChHHH
Q 004210 3 VVGFDIGNENCVIAAVKQGGMLDVLLNDESKRETPTVVSFSEKQRFLGSAGAASAMMNPKSTISQVKRLLGRKFREDDVQ 82 (768)
Q Consensus 3 viGID~Gtt~s~va~~~~~~~~~i~~n~~~~r~~Ps~v~~~~~~~~~G~~A~~~~~~~p~~~~~~~k~llg~~~~~~~~~ 82 (768)
||||||||+||+||++.+|. ++++.|..|+|++||+|+|.+++++||..|.....++|.++++++|||||+.++++.++
T Consensus 1 viGID~Gt~~~~va~~~~~~-~~ii~~~~~~~~~ps~v~~~~~~~~~G~~a~~~~~~~~~~~~~~~k~liG~~~~~~~~~ 79 (602)
T PF00012_consen 1 VIGIDLGTTNSKVAVFKNGK-PEIILNEEGKRKTPSVVSFSDNERLVGEDAKSQMIRNPKNTIYNLKRLIGRKFDDPDVQ 79 (602)
T ss_dssp EEEEEE-SSEEEEEEEETTE-EEEE--TTS-SSEESEEEEESSCEEETHHHHHTTTTSGGGEEESGGGTTTSBTTSHHHH
T ss_pred CEEEEeccCCEEEEEEEecc-ccccccccccccccceeeEeeecccCCcchhhhcccccccccccccccccccccccccc
Confidence 79999999999999999988 99999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCceeeecCCCCEEEEEEecCceeEecHHHHHHHHHHHHHHHHHhhccCCCCeEEEEeCCCCCHHHHHHHHHHHH
Q 004210 83 KDLKLFPFETCESHDGGILIMLEYLGETHKFTPVQILGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDVQRRAYLDAAT 162 (768)
Q Consensus 83 ~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~el~a~~L~~l~~~a~~~~~~~~~~~VitVP~~~~~~qr~~l~~Aa~ 162 (768)
.+.+.+||.++..++|.+.+.+.+.|....++|+++++++|+++++.++.+++..+.++|||||++|++.||+++++||+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~~~~Aa~ 159 (602)
T PF00012_consen 80 KEKKKFPYKVVEDPDGKVYFEVDYDGKSKTYSPEELSAMILKYLKEMAEKYLGEKVTDVVITVPAYFTDEQRQALRDAAE 159 (602)
T ss_dssp HHHTTSSSEEEEETTTEEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHTSBEEEEEEEE-TT--HHHHHHHHHHHH
T ss_pred hhhhcccccccccccccccccccccccceeeeeecccccchhhhcccchhhcccccccceeeechhhhhhhhhccccccc
Confidence 99999999999998999999999998888999999999999999999999999999999999999999999999999999
Q ss_pred HcCCcceEeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCCchhhHHHHHHHH
Q 004210 163 IAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEVLSSY 242 (768)
Q Consensus 163 ~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~d~~l~~~ 242 (768)
.|||++++||+||+|||++|++.+.. .+.++|||||||||+|+|++++.++.++++++.++..+||++||..|++|
T Consensus 160 ~agl~~~~li~Ep~Aaa~~y~~~~~~----~~~~vlv~D~Gggt~dvs~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~ 235 (602)
T PF00012_consen 160 LAGLNVLRLINEPTAAALAYGLERSD----KGKTVLVVDFGGGTFDVSVVEFSNGQFEVLATAGDNNLGGRDFDEALAEY 235 (602)
T ss_dssp HTT-EEEEEEEHHHHHHHHTTTTSSS----SEEEEEEEEEESSEEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHH
T ss_pred ccccccceeecccccccccccccccc----cccceeccccccceEeeeehhcccccccccccccccccccceecceeecc
Confidence 99999999999999999999887642 57899999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcccCccCChHHHHHHHHHHHHHhhhccC--CCcccEEEecccc-CcceEEEecHHHHHHHHHHHHHHHHHHH
Q 004210 243 FAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSA--NAEAPLNIECLMN-EKDVKGFIRREEFEKLSSSLLERMRIPC 319 (768)
Q Consensus 243 l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~--~~~~~i~i~~l~~-~~d~~~~itr~~fe~~~~~~~~~i~~~i 319 (768)
+.++|..+++.++..+++++.+|+.+||++|+.||. +.+..+.++++++ |.++.+.|||++|+++|.|+++++..+|
T Consensus 236 ~~~~~~~~~~~d~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~~~~~~~~~~~~~~~~~itr~~fe~l~~~~~~~~~~~i 315 (602)
T PF00012_consen 236 LLEKFKKKYKIDLRENPRAMARLLEAAEKAKEQLSSNDNTEITISIESLYDDGEDFSITITREEFEELCEPLLERIIEPI 315 (602)
T ss_dssp HHHHHHHHHSS-GTCSHHHHHHHHHHHHHHHHHTTTSSSSEEEEEEEEEETTTEEEEEEEEHHHHHHHTHHHHHHTHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeccccccccccccccc
Confidence 999999999999999999999999999999999999 6667788888887 8899999999999999999999999999
Q ss_pred HHHHHhcCCCCCCcCEEEEecCCCChHHHHHHHHhhcCCCCCCcCChhhHHHhHHHHHhhHhcCCccccceEEeecccee
Q 004210 320 QKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQCAMLSPQYCVREFEVQDSFPFS 399 (768)
Q Consensus 320 ~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~Gaa~~a~~ls~~~~~~~~~~~d~~~~~ 399 (768)
+++|+++++...+|+.|+||||+||+|+|++.|++.||..+..++||++|||+|||++|+.+++.++++++.+.|++|++
T Consensus 316 ~~~l~~~~~~~~~i~~V~lvGG~sr~p~v~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~~~~~~~~~~~~~~d~~~~~ 395 (602)
T PF00012_consen 316 EKALKDAGLKKEDIDSVLLVGGSSRIPYVQEALKELFGKKISKSVNPDEAVARGAALYAAILSGSFRVKDIKIIDVTPFS 395 (602)
T ss_dssp HHHHHHTT--GGGESEEEEESGGGGSHHHHHHHHHHTTSEEB-SS-TTTHHHHHHHHHHHHHHTSCSSTSSCESEBESSE
T ss_pred ccccccccccccccceeEEecCcccchhhhhhhhhccccccccccccccccccccccchhhhcccccccccccccccccc
Confidence 99999999999999999999999999999999999999888899999999999999999999999999999999999999
Q ss_pred eEEEecCCCcccceeEEEecCCCCCCceeEEEEeecC----ceEEEEEEeccccCCCCCCCcceeEEecCCCCCCCCcce
Q 004210 400 IGFSSEKGPICTFSNGVLLPKGQPFPSVKILTLHRSN----GFQLQAFYADQNELPSVVSPQISSFMIGPFQTSHAETAR 475 (768)
Q Consensus 400 i~i~~~~~~~~~~~~~~l~~~g~~~p~~k~~~f~~~~----~~~i~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~ 475 (768)
||+++.++ .+.+++++|+++|..++..|.+.. .|.+.++|++... ..++..||+|.|.++++.+.+.++
T Consensus 396 ~~i~~~~~-----~~~~ii~~~t~iP~~~~~~~~t~~~~~~~i~i~i~~g~~~~--~~~~~~ig~~~i~~i~~~~~g~~~ 468 (602)
T PF00012_consen 396 IGIEVSNG-----KFSKIIPKNTPIPSKKSKSFKTVTDNQTSISIDIYEGESSS--FEDNKKIGSYTISGIPPAPKGKPK 468 (602)
T ss_dssp EEEEETTT-----EEEEEESTTEBSSEEEEEEEEESSTTCSEEEEEEEESSSSB--GGGSEEEEEEEEES-SSSSTTSSE
T ss_pred cccccccc-----ccccccccccccccccccccchhccccccccceeeeccccc--cccccccccccccccccccccccc
Confidence 99999887 789999999999999887776532 4788888776543 367799999999999988888899
Q ss_pred EEEEEEEcCCccEEEEeeeeeeeeeecccccccccccccccccccCCCCCCCCCCcccccccccceeeeeeeecccCCCC
Q 004210 476 VKVRVHLDLDGVVRVQSASLIEEFVDDSVRRESRDAHLTLEEDAKSDHTPATAIDPEINRKGKVLKRLEIPVNENVNGGM 555 (768)
Q Consensus 476 i~v~~~~d~~Gil~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~i~~~~~~~l 555 (768)
|+|+|++|.+|+|+|+++++. ......+.+.... .+
T Consensus 469 i~v~f~ld~~Gil~V~~~~~~------------------------------------------~~~~~~~~v~~~~--~~ 504 (602)
T PF00012_consen 469 IKVTFELDENGILSVEAAEVE------------------------------------------TGKEEEVTVKKKE--TL 504 (602)
T ss_dssp EEEEEEEETTSEEEEEEEETT------------------------------------------TTEEEEEEEESSS--SS
T ss_pred eeeEEeeeeeeehhhhhcccc------------------------------------------ccccccccccccc--cc
Confidence 999999999999999998521 1222233444443 48
Q ss_pred CHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHHHHHHHhhHhhccCCHHHHHHHHHHHHHHHHHHhhcCCCccHH
Q 004210 556 TKTELSEAVEKEHQLVQQDLKMERTKDRKNALESYVYEMRDKISNIYRSFATESEREGISRNLRDTEEWLYEDGDDESEN 635 (768)
Q Consensus 556 s~~e~~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~t~~e~~~l~~~l~~~~~WL~~~g~~a~~~ 635 (768)
+.++++.+.+++.++...|+.++++.+++|+||+|+|++|+.|++. ..+++++++ .++++++.+||++++++++.+
T Consensus 505 ~~~~~~~~~~~~~~~~~~d~~~~~~~e~kn~lE~~i~~~r~~l~~~-~~~~~~~~~---~~~l~~~~~wl~~~~~~~~~~ 580 (602)
T PF00012_consen 505 SKEEIEELKKKLEEMDEEDEERRERAEAKNELESYIYELRDKLEED-KDFVSEEEK---KKKLKETSDWLEDNGEDADKE 580 (602)
T ss_dssp CHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC-GGGSTHHHH---HHHHHHHHHHHHHHTTTSHHH
T ss_pred ccccccccccccchhhhhhhhhhhccccHHHHHHHHHHHHHHHHhh-hccCCHHHH---HHHHHHHHHHHHhhccCCCHH
Confidence 9999999999999999999999999999999999999999999875 667777766 899999999999998899999
Q ss_pred HHHHHHHHHHHhHhHHHHhhH
Q 004210 636 VYAERLEDLKKLVDPIEGRYK 656 (768)
Q Consensus 636 ~~~~kl~~L~~~~~pi~~R~~ 656 (768)
+|++|+++|+++.+||..|++
T Consensus 581 e~~~kl~~L~~~~~~i~~r~~ 601 (602)
T PF00012_consen 581 EYKEKLEELKKVIEPIKKRYM 601 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999985
No 16
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=3.4e-92 Score=809.48 Aligned_cols=578 Identities=24% Similarity=0.409 Sum_probs=517.2
Q ss_pred eEEEEEcCccceEEEEEEcCCceEEEeCCCCCccceEEEEeeCCceeecHHHHhhhhhCCcchHhHHHHhcCCCCCChHH
Q 004210 2 SVVGFDIGNENCVIAAVKQGGMLDVLLNDESKRETPTVVSFSEKQRFLGSAGAASAMMNPKSTISQVKRLLGRKFREDDV 81 (768)
Q Consensus 2 ~viGID~Gtt~s~va~~~~~~~~~i~~n~~~~r~~Ps~v~~~~~~~~~G~~A~~~~~~~p~~~~~~~k~llg~~~~~~~~ 81 (768)
.+||||||||||+||++.+|. ++++.|..|+|.+||+|+|.+++++||..|..+...+|.++++++|||||+.+.+ +
T Consensus 20 ~~iGIDlGTt~s~va~~~~g~-~~ii~n~~g~~~~PS~V~f~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d--~ 96 (616)
T PRK05183 20 LAVGIDLGTTNSLVATVRSGQ-AEVLPDEQGRVLLPSVVRYLEDGIEVGYEARANAAQDPKNTISSVKRFMGRSLAD--I 96 (616)
T ss_pred eEEEEEeccccEEEEEEECCE-EEEEEcCCCCeecCeEEEEcCCCEEEcHHHHHhhHhCchhhHHHHHHHhCCCchh--h
Confidence 479999999999999999988 8999999999999999999988899999999999999999999999999998876 3
Q ss_pred HhhhccCCceeeecCCCCEEEEEEecCceeEecHHHHHHHHHHHHHHHHHhhccCCCCeEEEEeCCCCCHHHHHHHHHHH
Q 004210 82 QKDLKLFPFETCESHDGGILIMLEYLGETHKFTPVQILGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDVQRRAYLDAA 161 (768)
Q Consensus 82 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~el~a~~L~~l~~~a~~~~~~~~~~~VitVP~~~~~~qr~~l~~Aa 161 (768)
+.....+||.+...++|.+.+.+.. ..++|+++++++|++|++.++.+++.++.++|||||+||++.||+++++||
T Consensus 97 ~~~~~~~~~~~~~~~~g~~~~~~~~----~~~~p~ei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa 172 (616)
T PRK05183 97 QQRYPHLPYQFVASENGMPLIRTAQ----GLKSPVEVSAEILKALRQRAEETLGGELDGAVITVPAYFDDAQRQATKDAA 172 (616)
T ss_pred hhhhhcCCeEEEecCCCceEEEecC----CeEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHH
Confidence 4455678999888878888877642 268999999999999999999999999999999999999999999999999
Q ss_pred HHcCCcceEeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCCchhhHHHHHHH
Q 004210 162 TIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEVLSS 241 (768)
Q Consensus 162 ~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~d~~l~~ 241 (768)
++|||++++||+||+|||++|++.. ..+.++||||+||||||+|++++.++.++|+++.|+.++||++||..|++
T Consensus 173 ~~AGl~v~~li~EPtAAAlay~~~~-----~~~~~vlV~DlGGGT~DvSv~~~~~~~~evlat~gd~~lGG~d~D~~l~~ 247 (616)
T PRK05183 173 RLAGLNVLRLLNEPTAAAIAYGLDS-----GQEGVIAVYDLGGGTFDISILRLSKGVFEVLATGGDSALGGDDFDHLLAD 247 (616)
T ss_pred HHcCCCeEEEecchHHHHHHhhccc-----CCCCEEEEEECCCCeEEEEEEEeeCCEEEEEEecCCCCcCHHHHHHHHHH
Confidence 9999999999999999999999764 24678999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcccCccCChHHHHHHHHHHHHHhhhccCCCcccEEEeccccCcceEEEecHHHHHHHHHHHHHHHHHHHHH
Q 004210 242 YFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANAEAPLNIECLMNEKDVKGFIRREEFEKLSSSLLERMRIPCQK 321 (768)
Q Consensus 242 ~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~i~i~~l~~~~d~~~~itr~~fe~~~~~~~~~i~~~i~~ 321 (768)
|+.++|. .+...+++++.+|+.+||++|+.||.+.++.+.+..+ ...|||++|+++|+++++++..++++
T Consensus 248 ~~~~~~~----~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~------~~~itr~efe~l~~~l~~~~~~~i~~ 317 (616)
T PRK05183 248 WILEQAG----LSPRLDPEDQRLLLDAARAAKEALSDADSVEVSVALW------QGEITREQFNALIAPLVKRTLLACRR 317 (616)
T ss_pred HHHHHcC----CCcCCCHHHHHHHHHHHHHHHHhcCCCceEEEEEecC------CCeEcHHHHHHHHHHHHHHHHHHHHH
Confidence 9998764 4445688999999999999999999998888877532 23599999999999999999999999
Q ss_pred HHHhcCCCCCCcCEEEEecCCCChHHHHHHHHhhcCCCCCCcCChhhHHHhHHHHHhhHhcCCccccceEEeeccceeeE
Q 004210 322 ALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQCAMLSPQYCVREFEVQDSFPFSIG 401 (768)
Q Consensus 322 ~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~Gaa~~a~~ls~~~~~~~~~~~d~~~~~i~ 401 (768)
+|+++++...+|+.|+||||+||+|+|++.|+++||..+..++|||+|||+|||++|+++++.+..+++.+.|++|++||
T Consensus 318 ~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg~~~~~~~npdeaVA~GAAi~a~~l~~~~~~~~~~l~dv~p~slg 397 (616)
T PRK05183 318 ALRDAGVEADEVKEVVMVGGSTRVPLVREAVGEFFGRTPLTSIDPDKVVAIGAAIQADILAGNKPDSDMLLLDVIPLSLG 397 (616)
T ss_pred HHHHcCCCcccCCEEEEECCcccChHHHHHHHHHhccCcCcCCCchHHHHHHHHHHHHHhccccccCceEEEeecccccc
Confidence 99999999999999999999999999999999999987888999999999999999999999887889999999999999
Q ss_pred EEecCCCcccceeEEEecCCCCCCceeEEEEee--cCceEEEEEEeccccCCCCCCCcceeEEecCCCCCCCCcceEEEE
Q 004210 402 FSSEKGPICTFSNGVLLPKGQPFPSVKILTLHR--SNGFQLQAFYADQNELPSVVSPQISSFMIGPFQTSHAETARVKVR 479 (768)
Q Consensus 402 i~~~~~~~~~~~~~~l~~~g~~~p~~k~~~f~~--~~~~~i~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~i~v~ 479 (768)
+++.++ .+.+|||+|+++|++++.+|++ +++..+.+.+..+++..+.+|..||+|.|.++|+.+.|.++|+|+
T Consensus 398 i~~~~g-----~~~~ii~r~t~iP~~~~~~~~t~~d~q~~v~i~v~qGe~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~ 472 (616)
T PRK05183 398 LETMGG-----LVEKIIPRNTTIPVARAQEFTTFKDGQTAMAIHVVQGERELVADCRSLARFELRGIPPMAAGAARIRVT 472 (616)
T ss_pred ceecCC-----eEEEEEeCCCcccccccEEEEeccCCCeEEEEEEecccccccccccEEEEEEeCCCCCCCCCCccEEEE
Confidence 998876 7899999999999999888875 444445443333344445788999999999999998888999999
Q ss_pred EEEcCCccEEEEeeeeeeeeeecccccccccccccccccccCCCCCCCCCCcccccccccceeeeeeeecccCCCCCHHH
Q 004210 480 VHLDLDGVVRVQSASLIEEFVDDSVRRESRDAHLTLEEDAKSDHTPATAIDPEINRKGKVLKRLEIPVNENVNGGMTKTE 559 (768)
Q Consensus 480 ~~~d~~Gil~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~i~~~~~~~ls~~e 559 (768)
|++|.||+|+|++.+ +.+++...+.|... .+|++++
T Consensus 473 f~~d~~Gil~V~a~~------------------------------------------~~~~~~~~~~i~~~--~~ls~~~ 508 (616)
T PRK05183 473 FQVDADGLLSVTAME------------------------------------------KSTGVEASIQVKPS--YGLTDDE 508 (616)
T ss_pred EEECCCCeEEEEEEE------------------------------------------cCCCcEEEeccccc--ccCCHHH
Confidence 999999999999863 33444556666544 3699999
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHHHHHHHhhHhhccCCHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHH
Q 004210 560 LSEAVEKEHQLVQQDLKMERTKDRKNALESYVYEMRDKISNIYRSFATESEREGISRNLRDTEEWLYEDGDDESENVYAE 639 (768)
Q Consensus 560 ~~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~t~~e~~~l~~~l~~~~~WL~~~g~~a~~~~~~~ 639 (768)
++++.+++.++..+|...+++.+++|++|+|+|.++..+.+ ....+++++|+.+...+++.++||..+ +.+.|++
T Consensus 509 i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~l~~~----d~~~~~~ 583 (616)
T PRK05183 509 IARMLKDSMSHAEEDMQARALAEQKVEAERVLEALQAALAA-DGDLLSAAERAAIDAAMAALREVAQGD----DADAIEA 583 (616)
T ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH-hhccCCHHHHHHHHHHHHHHHHHHhcC----CHHHHHH
Confidence 99999999999999999999999999999999999999965 346789999999999999999999754 5679999
Q ss_pred HHHHHHHhHhHHHHhh
Q 004210 640 RLEDLKKLVDPIEGRY 655 (768)
Q Consensus 640 kl~~L~~~~~pi~~R~ 655 (768)
++++|+++..++..+.
T Consensus 584 ~~~~l~~~~~~~~~~~ 599 (616)
T PRK05183 584 AIKALDKATQEFAARR 599 (616)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998743
No 17
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=1.7e-86 Score=754.96 Aligned_cols=551 Identities=23% Similarity=0.334 Sum_probs=471.7
Q ss_pred eEEEEEcCccceEEEEEEcCCceEEEeCCCCCccceEEEEeeCCceeecHHHHhhhhhCCcchHhHHHHhcCCCCCC---
Q 004210 2 SVVGFDIGNENCVIAAVKQGGMLDVLLNDESKRETPTVVSFSEKQRFLGSAGAASAMMNPKSTISQVKRLLGRKFRE--- 78 (768)
Q Consensus 2 ~viGID~Gtt~s~va~~~~~~~~~i~~n~~~~r~~Ps~v~~~~~~~~~G~~A~~~~~~~p~~~~~~~k~llg~~~~~--- 78 (768)
.+||||||||||+||++.+|. ++++.|..|+|.+||+|+|.++++++|..| +++++||+||+.+++
T Consensus 20 ~viGIDlGTT~S~va~~~~~~-~~ii~n~~g~~~tPS~V~f~~~~~~vG~~A----------ti~~~KrliG~~~~~~~~ 88 (595)
T PRK01433 20 IAVGIDFGTTNSLIAIATNRK-VKVIKSIDDKELIPTTIDFTSNNFTIGNNK----------GLRSIKRLFGKTLKEILN 88 (595)
T ss_pred eEEEEEcCcccEEEEEEeCCe-eEEEECCCCCeecCeEEEEcCCCEEECchh----------hHHHHHHHhCCCchhhcc
Confidence 389999999999999998777 999999999999999999998889999987 789999999999865
Q ss_pred -hHHHhhhccCCceeeecCCCCEEEEEEecCceeEecHHHHHHHHHHHHHHHHHhhccCCCCeEEEEeCCCCCHHHHHHH
Q 004210 79 -DDVQKDLKLFPFETCESHDGGILIMLEYLGETHKFTPVQILGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDVQRRAY 157 (768)
Q Consensus 79 -~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~el~a~~L~~l~~~a~~~~~~~~~~~VitVP~~~~~~qr~~l 157 (768)
+.+....+. .....++... +.+.+ ..++|+++++++|++|++.|+.++|.++.++|||||+||++.||+++
T Consensus 89 ~~~~~~~~k~----~~~~~~~~~~--~~~~~--~~~speei~a~iL~~lk~~ae~~lg~~v~~aVITVPa~f~~~qR~a~ 160 (595)
T PRK01433 89 TPALFSLVKD----YLDVNSSELK--LNFAN--KQLRIPEIAAEIFIYLKNQAEEQLKTNITKAVITVPAHFNDAARGEV 160 (595)
T ss_pred chhhHhhhhh----eeecCCCeeE--EEECC--EEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHH
Confidence 222221111 1111223323 33333 57999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCcceEeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCCchhhHHH
Q 004210 158 LDAATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDE 237 (768)
Q Consensus 158 ~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~d~ 237 (768)
++||++|||++++||+||+|||++|++.. ....++||||+||||||+|++++.++.++|++++|+.++||++||.
T Consensus 161 ~~Aa~~AGl~v~~li~EPtAAAlay~~~~-----~~~~~vlV~DlGGGT~DvSi~~~~~~~~~V~at~gd~~lGG~d~D~ 235 (595)
T PRK01433 161 MLAAKIAGFEVLRLIAEPTAAAYAYGLNK-----NQKGCYLVYDLGGGTFDVSILNIQEGIFQVIATNGDNMLGGNDIDV 235 (595)
T ss_pred HHHHHHcCCCEEEEecCcHHHHHHHhccc-----CCCCEEEEEECCCCcEEEEEEEEeCCeEEEEEEcCCcccChHHHHH
Confidence 99999999999999999999999999765 2356899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcccCccCChHHHHHHHHHHHHHhhhccCCCcccEEEeccccCcceEEEecHHHHHHHHHHHHHHHHH
Q 004210 238 VLSSYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANAEAPLNIECLMNEKDVKGFIRREEFEKLSSSLLERMRI 317 (768)
Q Consensus 238 ~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~i~i~~l~~~~d~~~~itr~~fe~~~~~~~~~i~~ 317 (768)
.|++|+..+|.. ..+.+ .++.||++|+.||.+..... ..++|||++|+++|+|+++++..
T Consensus 236 ~l~~~~~~~~~~------~~~~~----~~~~~ekaK~~LS~~~~~~~----------~~~~itr~efe~l~~~l~~~~~~ 295 (595)
T PRK01433 236 VITQYLCNKFDL------PNSID----TLQLAKKAKETLTYKDSFNN----------DNISINKQTLEQLILPLVERTIN 295 (595)
T ss_pred HHHHHHHHhcCC------CCCHH----HHHHHHHHHHhcCCCccccc----------ceEEEcHHHHHHHHHHHHHHHHH
Confidence 999999988742 22222 23469999999998764321 16799999999999999999999
Q ss_pred HHHHHHHhcCCCCCCcCEEEEecCCCChHHHHHHHHhhcCCCCCCcCChhhHHHhHHHHHhhHhcCCccccceEEeeccc
Q 004210 318 PCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQCAMLSPQYCVREFEVQDSFP 397 (768)
Q Consensus 318 ~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~Gaa~~a~~ls~~~~~~~~~~~d~~~ 397 (768)
+++++|++++ ..+|+.|+||||+||+|+|++.|+++||.++..++||++|||+|||++|+++++.+ .++.+.|++|
T Consensus 296 ~i~~~L~~a~--~~~Id~ViLvGGssriP~v~~~l~~~f~~~~~~~~npdeaVA~GAAi~a~~l~~~~--~~~~l~Dv~p 371 (595)
T PRK01433 296 IAQECLEQAG--NPNIDGVILVGGATRIPLIKDELYKAFKVDILSDIDPDKAVVWGAALQAENLIAPH--TNSLLIDVVP 371 (595)
T ss_pred HHHHHHhhcC--cccCcEEEEECCcccChhHHHHHHHHhCCCceecCCchHHHHHHHHHHHHHhhCCc--cceEEEEecc
Confidence 9999999998 56899999999999999999999999998888899999999999999999998753 5789999999
Q ss_pred eeeEEEecCCCcccceeEEEecCCCCCCceeEEEEee--cCc--eEEEEEEeccccCCCCCCCcceeEEecCCCCCCCCc
Q 004210 398 FSIGFSSEKGPICTFSNGVLLPKGQPFPSVKILTLHR--SNG--FQLQAFYADQNELPSVVSPQISSFMIGPFQTSHAET 473 (768)
Q Consensus 398 ~~i~i~~~~~~~~~~~~~~l~~~g~~~p~~k~~~f~~--~~~--~~i~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~ 473 (768)
++||+++.++ .+.+||+||+++|++++..|++ +++ +.|.++++ ++....+|..||+|.|.++|+.+.|.
T Consensus 372 ~slgi~~~~g-----~~~~ii~rnt~iP~~~~~~f~t~~d~q~~v~i~v~qG--e~~~~~~n~~lg~~~l~~i~~~~~g~ 444 (595)
T PRK01433 372 LSLGMELYGG-----IVEKIIMRNTPIPISVVKEFTTYADNQTGIQFHILQG--EREMAADCRSLARFELKGLPPMKAGS 444 (595)
T ss_pred cceEEEecCC-----EEEEEEECCCcccceeeEEeEeecCCCeEEEEEEEec--cccccCCCcEEEEEEEcCCCCCCCCC
Confidence 9999999877 7999999999999998877776 344 44555444 33445789999999999999998888
Q ss_pred ceEEEEEEEcCCccEEEEeeeeeeeeeecccccccccccccccccccCCCCCCCCCCcccccccccceeeeeeeecccCC
Q 004210 474 ARVKVRVHLDLDGVVRVQSASLIEEFVDDSVRRESRDAHLTLEEDAKSDHTPATAIDPEINRKGKVLKRLEIPVNENVNG 553 (768)
Q Consensus 474 ~~i~v~~~~d~~Gil~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~i~~~~~~ 553 (768)
++|+|+|++|.||+|+|++.+ +.++++..+.|... .
T Consensus 445 ~~i~vtf~id~~Gil~V~a~~------------------------------------------~~t~~~~~~~i~~~--~ 480 (595)
T PRK01433 445 IRAEVTFAIDADGILSVSAYE------------------------------------------KISNTSHAIEVKPN--H 480 (595)
T ss_pred ccEEEEEEECCCCcEEEEEEE------------------------------------------cCCCcEEEEEecCC--C
Confidence 999999999999999999873 44555666777654 3
Q ss_pred CCCHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHHHHHHHhhHhhccCCHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 004210 554 GMTKTELSEAVEKEHQLVQQDLKMERTKDRKNALESYVYEMRDKISNIYRSFATESEREGISRNLRDTEEWLYEDGDDES 633 (768)
Q Consensus 554 ~ls~~e~~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~t~~e~~~l~~~l~~~~~WL~~~g~~a~ 633 (768)
+|++++++++.++..++..+|...+++.+++|.+|+++|.++..+.+ +...+++++|+.+.+.+++.++||..+ .
T Consensus 481 ~ls~~ei~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~i~~~~~~~~~~l~~~----~ 555 (595)
T PRK01433 481 GIDKTEIDIMLENAYKNAKIDYTTRLLQEAVIEAEALIFNIERAIAE-LTTLLSESEISIINSLLDNIKEAVHAR----D 555 (595)
T ss_pred CCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-hhccCCHHHHHHHHHHHHHHHHHHhcC----C
Confidence 59999999999999999999999999999999999999999999975 566789999999999999999999743 4
Q ss_pred HHHHHHHHHHHHHhHhH-HHHhhH
Q 004210 634 ENVYAERLEDLKKLVDP-IEGRYK 656 (768)
Q Consensus 634 ~~~~~~kl~~L~~~~~p-i~~R~~ 656 (768)
...+++++++|+....+ +..|..
T Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~ 579 (595)
T PRK01433 556 IILINNSIKEFKSKIKKSMDTKLN 579 (595)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56788888888888887 444443
No 18
>KOG0102 consensus Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.2e-89 Score=710.25 Aligned_cols=587 Identities=27% Similarity=0.468 Sum_probs=537.6
Q ss_pred eEEEEEcCccceEEEEEEcCCceEEEeCCCCCccceEEEEee-CCceeecHHHHhhhhhCCcchHhHHHHhcCCCCCChH
Q 004210 2 SVVGFDIGNENCVIAAVKQGGMLDVLLNDESKRETPTVVSFS-EKQRFLGSAGAASAMMNPKSTISQVKRLLGRKFREDD 80 (768)
Q Consensus 2 ~viGID~Gtt~s~va~~~~~~~~~i~~n~~~~r~~Ps~v~~~-~~~~~~G~~A~~~~~~~p~~~~~~~k~llg~~~~~~~ 80 (768)
+|+|||+||||||++++.++. +.++.|..|.|.+||+|+|. +.++++|-.|+.++..||.|+++.-||+||+++.+|.
T Consensus 28 ~vigidlgttnS~va~meg~~-~kiienaegqrtTpsvva~~kdge~Lvg~~akrqav~n~~ntffatKrligRrf~d~e 106 (640)
T KOG0102|consen 28 KVIGIDLGTTNSCVAVMEGKK-PKIIENAEGQRTTPSVVAFTKDGERLVGMPAKRQAVTNPENTFFATKRLIGRRFDDPE 106 (640)
T ss_pred ceeeEeeeccceeEEEEeCCC-ceEeecccccccCCceEEEeccccEEecchhhhhhccCCCceEEEehhhhhhhccCHH
Confidence 489999999999999999998 88999999999999999996 5589999999999999999999999999999999999
Q ss_pred HHhhhccCCceeeecCCCCEEEEEEecCceeEecHHHHHHHHHHHHHHHHHhhccCCCCeEEEEeCCCCCHHHHHHHHHH
Q 004210 81 VQKDLKLFPFETCESHDGGILIMLEYLGETHKFTPVQILGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDVQRRAYLDA 160 (768)
Q Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~el~a~~L~~l~~~a~~~~~~~~~~~VitVP~~~~~~qr~~l~~A 160 (768)
++.+++..||+++...||...++. . ...++|.++.+++|.+++..|+.+++..+...|+|||+||++.||+++++|
T Consensus 107 vq~~~k~vpyKiVk~~ngdaw~e~--~--G~~~spsqig~~vl~kmk~tae~yl~~~v~~avvtvpAyfndsqRqaTkda 182 (640)
T KOG0102|consen 107 VQKDIKQVPYKIVKASNGDAWVEA--R--GKQYSPSQIGAFVLMKMKETAEAYLGKKVKNAVITVPAYFNDSQRQATKDA 182 (640)
T ss_pred HHHHHHhCCcceEEccCCcEEEEe--C--CeEecHHHHHHHHHHHHHHHHHHHcCchhhheeeccHHHHhHHHHHHhHhh
Confidence 999999999999999999988776 3 478999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCcceEeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCCchhhHHHHHH
Q 004210 161 ATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEVLS 240 (768)
Q Consensus 161 a~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~d~~l~ 240 (768)
.++||+++++++|||+|||++|++.+. ....++|||+||||||++|+.+.+|.|+|.++.+|.++||.+||..++
T Consensus 183 g~iagl~vlrvineptaaalaygld~k-----~~g~iaV~dLgggtfdisilei~~gvfevksTngdtflggedfd~~~~ 257 (640)
T KOG0102|consen 183 GQIAGLNVLRVINEPTAAALAYGLDKK-----EDGVIAVFDLGGGTFDISILEIEDGVFEVKSTNGDTHLGGEDFDNALV 257 (640)
T ss_pred hhhccceeeccCCccchhHHhhccccc-----CCCceEEEEcCCceeeeeeehhccceeEEEeccCccccChhHHHHHHH
Confidence 999999999999999999999999863 268899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcccCccCChHHHHHHHHHHHHHhhhccCCCcccEEEeccccC----cceEEEecHHHHHHHHHHHHHHHH
Q 004210 241 SYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANAEAPLNIECLMNE----KDVKGFIRREEFEKLSSSLLERMR 316 (768)
Q Consensus 241 ~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~i~i~~l~~~----~d~~~~itr~~fe~~~~~~~~~i~ 316 (768)
+|+...|+...++++..+.+++.||++++|++|+.||....+.++++.+..+ ..+++++||.+||+++.++++|.+
T Consensus 258 ~~~v~~fk~~~gidl~kd~~a~qrl~eaaEkaKielSs~~~tei~lp~iTada~gpkh~~i~~tr~efe~~v~~lI~Rti 337 (640)
T KOG0102|consen 258 RFIVSEFKKEEGIDLTKDRMALQRLREAAEKAKIELSSRQQTEINLPFITADASGPKHLNIELTRGEFEELVPSLIARTI 337 (640)
T ss_pred HHHHHhhhcccCcchhhhHHHHHHHHHHHHhhhhhhhhcccceeccceeeccCCCCeeEEEeecHHHHHHhhHHHHHhhh
Confidence 9999999999999999999999999999999999999999999999988766 568999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCcCEEEEecCCCChHHHHHHHHhhcCCCCCCcCChhhHHHhHHHHHhhHhcCCccccceEEeecc
Q 004210 317 IPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQCAMLSPQYCVREFEVQDSF 396 (768)
Q Consensus 317 ~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~Gaa~~a~~ls~~~~~~~~~~~d~~ 396 (768)
.+++++|++|++..+||+.|+|+||++|+|.+++.+++.||......+||||+||.|||+++..+++. +++..+.|++
T Consensus 338 ~p~~~aL~dA~~~~~di~EV~lvggmtrmpkv~s~V~e~fgk~p~~~vnPdeava~GAaiqggvl~ge--VkdvlLLdVt 415 (640)
T KOG0102|consen 338 EPCKKALRDASLSSSDINEVILVGGMTRMPKVQSTVKELFGKGPSKGVNPDEAVAGGAAIQGGVLSGE--VKDVLLLDVT 415 (640)
T ss_pred hHHHHHHHhccCChhhhhhhhhhcchhhcHHHHHHHHHHhCCCCCCCcCCcchhccchhhccchhhcc--ccceeeeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999986 8899999999
Q ss_pred ceeeEEEecCCCcccceeEEEecCCCCCCceeEEEEeec--Cc--eEEEEEEeccccCCCCCCCcceeEEecCCCCCCCC
Q 004210 397 PFSIGFSSEKGPICTFSNGVLLPKGQPFPSVKILTLHRS--NG--FQLQAFYADQNELPSVVSPQISSFMIGPFQTSHAE 472 (768)
Q Consensus 397 ~~~i~i~~~~~~~~~~~~~~l~~~g~~~p~~k~~~f~~~--~~--~~i~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~ 472 (768)
|.++|+++-++ .+..|+++|+.||++++-.|.+. ++ ++|.++++ ++....+|..+|+|.+.|+||.++|
T Consensus 416 pLsLgietlgg-----vft~Li~rnttIptkksqvfstaadgqt~V~ikv~qg--ere~~~dnk~lG~f~l~gipp~pRg 488 (640)
T KOG0102|consen 416 PLSLGIETLGG-----VFTKLIPRNTTIPTKKSQVFSTAADGQTQVEIKVFQG--EREMVNDNKLLGSFILQGIPPAPRG 488 (640)
T ss_pred hHHHHHHhhhh-----hheecccCCcccCchhhhheeecccCCceEEEEeeec--hhhhhccCcccceeeecccCCCCCC
Confidence 99999999988 89999999999999999888874 33 56666655 4445689999999999999999999
Q ss_pred cceEEEEEEEcCCccEEEEeeeeeeeeeecccccccccccccccccccCCCCCCCCCCcccccccccceeeeeeeecccC
Q 004210 473 TARVKVRVHLDLDGVVRVQSASLIEEFVDDSVRRESRDAHLTLEEDAKSDHTPATAIDPEINRKGKVLKRLEIPVNENVN 552 (768)
Q Consensus 473 ~~~i~v~~~~d~~Gil~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~i~~~~~ 552 (768)
.++|.|+|.+|.+||++|++.. +.+.+..++++....
T Consensus 489 vpqieVtfDIdanGI~~vsA~d------------------------------------------k~t~K~qsi~i~~sg- 525 (640)
T KOG0102|consen 489 VPQIEVTFDIDANGIGTVSAKD------------------------------------------KGTGKSQSITIASSG- 525 (640)
T ss_pred CCceeEEEeecCCceeeeehhh------------------------------------------cccCCccceEEeecC-
Confidence 9999999999999999999963 456677788887774
Q ss_pred CCCCHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHHHHHHHhhHhhccCCHHHHHHHHHHHHHHHHHHhhcCCCc
Q 004210 553 GGMTKTELSEAVEKEHQLVQQDLKMERTKDRKNALESYVYEMRDKISNIYRSFATESEREGISRNLRDTEEWLYEDGDDE 632 (768)
Q Consensus 553 ~~ls~~e~~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~t~~e~~~l~~~l~~~~~WL~~~g~~a 632 (768)
+||.++++.+.+..+.+...|+.++++.+..|..|+++|.....+.+ |.+..+.++..+|...+....+.+-.- ...
T Consensus 526 -gLs~~ei~~mV~eaer~~~~d~~~~~~ie~~nka~s~~~~te~~~~~-~~~~~~~~~~~~i~~~i~~l~~~~~~~-~~~ 602 (640)
T KOG0102|consen 526 -GLSKDEIELMVGEAERLASTDKEKREAIETKNKADSIIYDTEKSLKE-FEEKIPAEECEKLEEKISDLRELVANK-DSG 602 (640)
T ss_pred -CCCHHHHHHHHHHHHHHHhhhHHHHHHhhhhcchhheecCchhhhhh-hhhhCcHHHHHHHHHHHHHHHHHHhhh-ccC
Confidence 69999999999999999999999999999999999999999988865 666777777788999888888887532 122
Q ss_pred cHHHHHHHHHHHHHhHhHHHH
Q 004210 633 SENVYAERLEDLKKLVDPIEG 653 (768)
Q Consensus 633 ~~~~~~~kl~~L~~~~~pi~~ 653 (768)
+.+....+...|+...-|+..
T Consensus 603 ~~~~~k~~~~~l~q~~lkl~e 623 (640)
T KOG0102|consen 603 DMEEIKKAMSALQQASLKLFE 623 (640)
T ss_pred ChhhHHHHHHHHHHhhhHHHH
Confidence 236666677777666666554
No 19
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-85 Score=741.10 Aligned_cols=569 Identities=30% Similarity=0.473 Sum_probs=520.0
Q ss_pred eEEEEEcCccceEEEEEEcCCceEEEeCCCCCccceEEEEeeCCc-eeecHHHHhhhhhCCcchHhHHHHhcCCCCCChH
Q 004210 2 SVVGFDIGNENCVIAAVKQGGMLDVLLNDESKRETPTVVSFSEKQ-RFLGSAGAASAMMNPKSTISQVKRLLGRKFREDD 80 (768)
Q Consensus 2 ~viGID~Gtt~s~va~~~~~~~~~i~~n~~~~r~~Ps~v~~~~~~-~~~G~~A~~~~~~~p~~~~~~~k~llg~~~~~~~ 80 (768)
.+||||||||||+||++++++.+.++.|..|.|.+||+|+|..++ +++|..|+.++..+|.++++.+||++|+...
T Consensus 6 ~~iGIDlGTTNS~vA~~~~~~~~~vi~n~~g~r~~PSvv~f~~~~~~~vG~~A~~q~~~~p~~t~~~~kr~~G~~~~--- 82 (579)
T COG0443 6 KAIGIDLGTTNSVVAVMRGGGLPKVIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAVDNPENTIFSIKRKIGRGSN--- 82 (579)
T ss_pred eEEEEEcCCCcEEEEEEeCCCCceEecCCCCCcccceEEEECCCCCEEecHHHHHHhhhCCcceEEEEehhcCCCCC---
Confidence 489999999999999999883399999999999999999999765 9999999999999999999999999998611
Q ss_pred HHhhhccCCceeeecCCCCEEEEEEecCceeEecHHHHHHHHHHHHHHHHHhhccCCCCeEEEEeCCCCCHHHHHHHHHH
Q 004210 81 VQKDLKLFPFETCESHDGGILIMLEYLGETHKFTPVQILGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDVQRRAYLDA 160 (768)
Q Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~el~a~~L~~l~~~a~~~~~~~~~~~VitVP~~~~~~qr~~l~~A 160 (768)
+. .+.+...| +.++|+++++++|.++++.++.+++..+.++|||||+||++.||+++++|
T Consensus 83 -----------------~~-~~~~~~~~--~~~~~eeisa~~L~~lk~~ae~~lg~~v~~~VItVPayF~d~qR~at~~A 142 (579)
T COG0443 83 -----------------GL-KISVEVDG--KKYTPEEISAMILTKLKEDAEAYLGEKVTDAVITVPAYFNDAQRQATKDA 142 (579)
T ss_pred -----------------CC-cceeeeCC--eeeCHHHHHHHHHHHHHHHHHHhhCCCcceEEEEeCCCCCHHHHHHHHHH
Confidence 11 11122223 57999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCcceEeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCCchhhHHHHHH
Q 004210 161 ATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEVLS 240 (768)
Q Consensus 161 a~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~d~~l~ 240 (768)
+++|||++++|++||+|||++|+.... .+.+|||||+||||||+|++++.+|.++|+++.|+.++||++||.+|+
T Consensus 143 ~~iaGl~vlrlinEPtAAAlayg~~~~-----~~~~vlV~DlGGGTfDvSll~~~~g~~ev~at~gd~~LGGddfD~~l~ 217 (579)
T COG0443 143 ARIAGLNVLRLINEPTAAALAYGLDKG-----KEKTVLVYDLGGGTFDVSLLEIGDGVFEVLATGGDNHLGGDDFDNALI 217 (579)
T ss_pred HHHcCCCeEEEecchHHHHHHhHhccC-----CCcEEEEEEcCCCCEEEEEEEEcCCEEEEeecCCCcccCchhHHHHHH
Confidence 999999999999999999999998773 578999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcccCccCChHHHHHHHHHHHHHhhhccCCCcccEEEeccccCcceEEEecHHHHHHHHHHHHHHHHHHHH
Q 004210 241 SYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANAEAPLNIECLMNEKDVKGFIRREEFEKLSSSLLERMRIPCQ 320 (768)
Q Consensus 241 ~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~i~i~~l~~~~d~~~~itr~~fe~~~~~~~~~i~~~i~ 320 (768)
+|+..+|..++++++..+++++.||+.+||++|+.||+..++.++++++..+.++..+|||++||+++.+++.++..++.
T Consensus 218 ~~~~~~f~~~~~~d~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~~~~~~~~~~~~~~ltR~~~E~l~~dll~r~~~~~~ 297 (579)
T COG0443 218 DYLVMEFKGKGGIDLRSDKAALQRLREAAEKAKIELSSATQTSINLPSIGGDIDLLKELTRAKFEELILDLLERTIEPVE 297 (579)
T ss_pred HHHHHHhhccCCccccccHHHHHHHHHHHHHHHHHcccccccccchhhccccchhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998887777889999999999999999999999999
Q ss_pred HHHHhcCCCCCCcCEEEEecCCCChHHHHHHHHhhcCCCCCCcCChhhHHHhHHHHHhhHhcCCccccceEEeeccceee
Q 004210 321 KALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQCAMLSPQYCVREFEVQDSFPFSI 400 (768)
Q Consensus 321 ~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~Gaa~~a~~ls~~~~~~~~~~~d~~~~~i 400 (768)
++|.+++++..+|+.|+||||++|||.|++.++++||.++..++|||++||.|||++|+.+++... ++.+.|++|+++
T Consensus 298 ~al~~a~l~~~~I~~VilvGGstriP~V~~~v~~~f~~~~~~~inpdeava~GAa~qa~~l~~~~~--d~ll~Dv~plsl 375 (579)
T COG0443 298 QALKDAGLEKSDIDLVILVGGSTRIPAVQELVKEFFGKEPEKSINPDEAVALGAAIQAAVLSGEVP--DVLLLDVIPLSL 375 (579)
T ss_pred HHHHHcCCChhhCceEEEccceeccHHHHHHHHHHhCccccccCCccHHHHHHHHHHHHhhcCccc--CceEEeeeeecc
Confidence 999999999999999999999999999999999999999999999999999999999999998754 899999999999
Q ss_pred EEEecCCCcccceeEEEecCCCCCCceeEEEEeecC--ceEEEEEEeccccCCCCCCCcceeEEecCCCCCCCCcceEEE
Q 004210 401 GFSSEKGPICTFSNGVLLPKGQPFPSVKILTLHRSN--GFQLQAFYADQNELPSVVSPQISSFMIGPFQTSHAETARVKV 478 (768)
Q Consensus 401 ~i~~~~~~~~~~~~~~l~~~g~~~p~~k~~~f~~~~--~~~i~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~i~v 478 (768)
|+++.++ .+..++++|+.+|.++.-.|.+.. +-.+.+....+++....+|..+|.|.+.++++.+.|.+.|+|
T Consensus 376 gie~~~~-----~~~~ii~rn~~iP~~~~~~f~t~~d~q~~~~i~v~qge~~~~~~~~~lg~f~l~~i~~~~~g~~~i~v 450 (579)
T COG0443 376 GIETLGG-----VRTPIIERNTTIPVKKSQEFSTAADGQTAVAIHVFQGEREMAADNKSLGRFELDGIPPAPRGVPQIEV 450 (579)
T ss_pred ccccCcc-----hhhhHHhcCCCCCcccceEEEeecCCCceeEEEEEecchhhcccCceeEEEECCCCCCCCCCCCceEE
Confidence 9999987 799999999999999988887644 444444444455555688999999999999999999999999
Q ss_pred EEEEcCCccEEEEeeeeeeeeeecccccccccccccccccccCCCCCCCCCCcccccccccceeeeeeeecccCCCCCHH
Q 004210 479 RVHLDLDGVVRVQSASLIEEFVDDSVRRESRDAHLTLEEDAKSDHTPATAIDPEINRKGKVLKRLEIPVNENVNGGMTKT 558 (768)
Q Consensus 479 ~~~~d~~Gil~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~i~~~~~~~ls~~ 558 (768)
+|.+|.+|+++|++.+ +.+++...+.|..+. + |+++
T Consensus 451 ~f~iD~~gi~~v~a~~------------------------------------------~~~~k~~~i~i~~~~-~-ls~~ 486 (579)
T COG0443 451 TFDIDANGILNVTAKD------------------------------------------LGTGKEQSITIKASS-G-LSDE 486 (579)
T ss_pred EeccCCCcceEeeeec------------------------------------------ccCCceEEEEEecCC-C-CCHH
Confidence 9999999999998853 345677788888876 4 9999
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHHHHHHHhhHhhccCCHHHHHHHHHHHHHHHHHHhhcCCCccHHHHH
Q 004210 559 ELSEAVEKEHQLVQQDLKMERTKDRKNALESYVYEMRDKISNIYRSFATESEREGISRNLRDTEEWLYEDGDDESENVYA 638 (768)
Q Consensus 559 e~~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~t~~e~~~l~~~l~~~~~WL~~~g~~a~~~~~~ 638 (768)
+++.+.+....+.+.|+..++..+.+|..++++|.++..|.+.. .+++++++.+.+.+.++++||+.+ ..+++
T Consensus 487 ~i~~~~~~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~ 559 (579)
T COG0443 487 EIERMVEDAEANAALDKKFRELVEARNEAESLIYSLEKALKEIV--KVSEEEKEKIEEAITDLEEALEGE-----KEEIK 559 (579)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHhhhc--cCCHHHHHHHHHHHHHHHHHHhcc-----HHHHH
Confidence 99999999999999999999999999999999999999998744 889999999999999999999982 88999
Q ss_pred HHHHHHHHhHhHHHHhhH
Q 004210 639 ERLEDLKKLVDPIEGRYK 656 (768)
Q Consensus 639 ~kl~~L~~~~~pi~~R~~ 656 (768)
.+.++|+....++..++.
T Consensus 560 ~~~~~l~~~~~~~~~~~~ 577 (579)
T COG0443 560 AKIEELQEVTQKLAEKKY 577 (579)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999998887654
No 20
>PRK11678 putative chaperone; Provisional
Probab=100.00 E-value=6.3e-55 Score=479.63 Aligned_cols=337 Identities=23% Similarity=0.307 Sum_probs=288.8
Q ss_pred EEEEEcCccceEEEEEEcCCceEEEeCCCCCccceEEEEee---------------------------------------
Q 004210 3 VVGFDIGNENCVIAAVKQGGMLDVLLNDESKRETPTVVSFS--------------------------------------- 43 (768)
Q Consensus 3 viGID~Gtt~s~va~~~~~~~~~i~~n~~~~r~~Ps~v~~~--------------------------------------- 43 (768)
++|||||||||+||++.+|. ++++.++.|.+.+||+|+|.
T Consensus 2 ~iGID~GTtNs~va~~~~~~-~~li~~~~~~~~~pS~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (450)
T PRK11678 2 FIGFDYGTANCSVAVMRDGK-PRLLPLENDSTYLPSTLCAPTREAVSEWLYRHLDVPAYDDERQALLRRAIRYNREEDID 80 (450)
T ss_pred eEEEecCccceeeEEeeCCc-eEEEEcCCCCCcCCeeeeccCchhhhhhhhhhcccCcccchhhhhhhhhhhhccccccc
Confidence 58999999999999999887 89999999999999999994
Q ss_pred --CCceeecHHHHhhhhhCCcch--HhHHHHhcCCCCCChHHHhhhccCCceeeecCCCCEEEEEEecCceeEecHHHHH
Q 004210 44 --EKQRFLGSAGAASAMMNPKST--ISQVKRLLGRKFREDDVQKDLKLFPFETCESHDGGILIMLEYLGETHKFTPVQIL 119 (768)
Q Consensus 44 --~~~~~~G~~A~~~~~~~p~~~--~~~~k~llg~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~el~ 119 (768)
++..++|..|+.....+|..+ +.++|++||...-.+ + ....+++++
T Consensus 81 ~~~~~~~~G~~A~~~~~~~p~~~r~i~s~Kr~lg~~~~~~------------------~------------~~~~~e~l~ 130 (450)
T PRK11678 81 VTAQSVFFGLAALAQYLEDPEEVYFVKSPKSFLGASGLKP------------------Q------------QVALFEDLV 130 (450)
T ss_pred ccccccchhHHHHHhhccCCCCceEEecchhhhccCCCCc------------------c------------ceeCHHHHH
Confidence 345689999999999999988 779999999652110 1 123489999
Q ss_pred HHHHHHHHHHHHhhccCCCCeEEEEeCCCCC-----HHHHHH---HHHHHHHcCCcceEeccchHHHHHHhhhcccCCCC
Q 004210 120 GMLLSNLKQITEKNIKIPISNCVIGVPCYLT-----DVQRRA---YLDAATIAGLKPLRLMHDCTATALGYGIYKTDFSN 191 (768)
Q Consensus 120 a~~L~~l~~~a~~~~~~~~~~~VitVP~~~~-----~~qr~~---l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~ 191 (768)
+++|++|++.++.+++.++.++|||||++|+ +.||++ +++||+.|||++++|++||+|||++|+...
T Consensus 131 a~iL~~lk~~ae~~~g~~v~~~VItvPa~F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y~~~~----- 205 (450)
T PRK11678 131 CAMMLHIKQQAEAQLQAAITQAVIGRPVNFQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDFEATL----- 205 (450)
T ss_pred HHHHHHHHHHHHHHhCCCCCcEEEEECCccccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHHhcccc-----
Confidence 9999999999999999999999999999998 778766 799999999999999999999999998643
Q ss_pred CCCcEEEEEEeCCceEEEEEEEeeCC-------eEEEEEEeCCCCCchhhHHHHHH-HHHHHHHhh----hcccCc----
Q 004210 192 VGPTYVVFVDIGHCDTQVCVASYENG-------HMKILSHAFDESLGGRDFDEVLS-SYFAAQFKQ----QYDIDV---- 255 (768)
Q Consensus 192 ~~~~~vlv~D~GggT~dvsv~~~~~~-------~~~vl~~~~~~~lGG~~~d~~l~-~~l~~~~~~----~~~~~~---- 255 (768)
..+..+|||||||||+|+|++++.++ ..+|+++.| ..+||+|||..|+ +++...|.. +++.++
T Consensus 206 ~~~~~vlV~D~GGGT~D~Svv~~~~~~~~~~~r~~~vla~~G-~~lGG~DfD~~L~~~~~~~~fg~~~~~~~g~~~p~~~ 284 (450)
T PRK11678 206 TEEKRVLVVDIGGGTTDCSMLLMGPSWRGRADRSASLLGHSG-QRIGGNDLDIALAFKQLMPLLGMGSETEKGIALPSLP 284 (450)
T ss_pred CCCCeEEEEEeCCCeEEEEEEEecCcccccCCcceeEEecCC-CCCChHHHHHHHHHHHHHHHhhhchhhccCCcCcchh
Confidence 35788999999999999999999754 368999997 6899999999998 678877752 111110
Q ss_pred -------------------------------cCChHHH------------HHHHHHHHHHhhhccCCCcccEEEeccccC
Q 004210 256 -------------------------------YTNVKAS------------IRLRASCEKLKKVLSANAEAPLNIECLMNE 292 (768)
Q Consensus 256 -------------------------------~~~~~~~------------~rL~~~ae~~K~~Ls~~~~~~i~i~~l~~~ 292 (768)
..+|+.+ .+|+.+||++|+.||.+.++.+.++.+.
T Consensus 285 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~p~~~~rl~~l~~~~~~~~L~~~aE~aK~~LS~~~~a~i~~~~~~-- 362 (450)
T PRK11678 285 FWNAVAINDVPAQSDFYSLANGRLLNDLIRDAREPEKVARLLKVWRQRLSYRLVRSAEEAKIALSDQAETRASLDFIS-- 362 (450)
T ss_pred hhhhhhhhccchhhhhhhhhhHHHHHHHhhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHcCCCCceEEEecccC--
Confidence 0133333 3788999999999999999999988664
Q ss_pred cceEEEecHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCEEEEecCCCChHHHHHHHHhhcCCCCCCcCChhhHHHh
Q 004210 293 KDVKGFIRREEFEKLSSSLLERMRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVAR 372 (768)
Q Consensus 293 ~d~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~ 372 (768)
.++..+|||++|+++|+++++++..+++++|+++++. ++.|+||||+|++|.|++.|++.||.......+|.++||.
T Consensus 363 ~~~~~~ItR~efe~ii~~~l~ri~~~i~~~L~~a~~~---~d~VvLvGGsSriP~V~~~l~~~fg~~~v~~g~~~~sVa~ 439 (450)
T PRK11678 363 DGLATEISQQGLEEAISQPLARILELVQLALDQAQVK---PDVIYLTGGSARSPLIRAALAQQLPGIPIVGGDDFGSVTA 439 (450)
T ss_pred CCcceeeCHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---CCEEEEcCcccchHHHHHHHHHHCCCCcEEeCCCcchHHH
Confidence 4577899999999999999999999999999999976 5789999999999999999999998655667899999999
Q ss_pred HHHHHhhHh
Q 004210 373 GCALQCAML 381 (768)
Q Consensus 373 Gaa~~a~~l 381 (768)
|+|++|..+
T Consensus 440 Gla~~a~~~ 448 (450)
T PRK11678 440 GLARWAQVV 448 (450)
T ss_pred HHHHHHHhh
Confidence 999999753
No 21
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=100.00 E-value=2.6e-38 Score=340.85 Aligned_cols=307 Identities=21% Similarity=0.300 Sum_probs=234.7
Q ss_pred EEEEcCccceEEEEEEcCCceEEEeCCCCCccceEEEEeeCC-c--eeecHHHHhhhhhCCcchHhHHHHhcCCCCCChH
Q 004210 4 VGFDIGNENCVIAAVKQGGMLDVLLNDESKRETPTVVSFSEK-Q--RFLGSAGAASAMMNPKSTISQVKRLLGRKFREDD 80 (768)
Q Consensus 4 iGID~Gtt~s~va~~~~~~~~~i~~n~~~~r~~Ps~v~~~~~-~--~~~G~~A~~~~~~~p~~~~~~~k~llg~~~~~~~ 80 (768)
+||||||++|+|+....+ .++. .||+|+|..+ + ..+|..|.....+.|.+....
T Consensus 6 ~gIDlGt~~~~i~~~~~~---~v~~-------~psvv~~~~~~~~i~~vG~~A~~~~~~~p~~~~~~------------- 62 (336)
T PRK13928 6 IGIDLGTANVLVYVKGKG---IVLN-------EPSVVAIDKNTNKVLAVGEEARRMVGRTPGNIVAI------------- 62 (336)
T ss_pred eEEEcccccEEEEECCCC---EEEc-------cCCEEEEECCCCeEEEecHHHHHhhhcCCCCEEEE-------------
Confidence 799999999999886333 2432 5999999954 2 368999976655544433210
Q ss_pred HHhhhccCCceeeecCCCCEEEEEEecCceeEecHHHHHHHHHHHHHHHHHhhccCCCCeEEEEeCCCCCHHHHHHHHHH
Q 004210 81 VQKDLKLFPFETCESHDGGILIMLEYLGETHKFTPVQILGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDVQRRAYLDA 160 (768)
Q Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~el~a~~L~~l~~~a~~~~~~~~~~~VitVP~~~~~~qr~~l~~A 160 (768)
.| ..+|. +...++...+++++.+.+..........+|||||++|+..||+++.+|
T Consensus 63 -------~p-----i~~G~-------------i~d~~~~~~~l~~~~~~~~~~~~~~~p~~vitvP~~~~~~~r~~~~~a 117 (336)
T PRK13928 63 -------RP-----LRDGV-------------IADYDVTEKMLKYFINKACGKRFFSKPRIMICIPTGITSVEKRAVREA 117 (336)
T ss_pred -------cc-----CCCCe-------------EecHHHHHHHHHHHHHHHhccCCCCCCeEEEEeCCCCCHHHHHHHHHH
Confidence 01 11232 222245566666666544322222344799999999999999999999
Q ss_pred HHHcCCcceEeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCCchhhHHHHHH
Q 004210 161 ATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEVLS 240 (768)
Q Consensus 161 a~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~d~~l~ 240 (768)
++.||++++.+++||+|||++|+... ..+..++|||+||||||+++++... +. ..++.++||++||..|+
T Consensus 118 ~~~ag~~~~~li~ep~Aaa~~~g~~~-----~~~~~~lVvDiGggttdvsvv~~g~----~~-~~~~~~lGG~did~~i~ 187 (336)
T PRK13928 118 AEQAGAKKVYLIEEPLAAAIGAGLDI-----SQPSGNMVVDIGGGTTDIAVLSLGG----IV-TSSSIKVAGDKFDEAII 187 (336)
T ss_pred HHHcCCCceEecccHHHHHHHcCCcc-----cCCCeEEEEEeCCCeEEEEEEEeCC----EE-EeCCcCCHHHHHHHHHH
Confidence 99999999999999999999998743 3466799999999999999998752 22 34578999999999999
Q ss_pred HHHHHHHhhhcccCccCChHHHHHHHHHHHHHhhhccCCC----cccEEEe--ccccCcceEEEecHHHHHHHHHHHHHH
Q 004210 241 SYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANA----EAPLNIE--CLMNEKDVKGFIRREEFEKLSSSLLER 314 (768)
Q Consensus 241 ~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~----~~~i~i~--~l~~~~d~~~~itr~~fe~~~~~~~~~ 314 (768)
+++..+|. .... ...||++|+.++... ...+.+. .+..+.+..+.|+|++|++++.+++++
T Consensus 188 ~~l~~~~~----~~~~---------~~~ae~lK~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~i~~~~~~eii~~~~~~ 254 (336)
T PRK13928 188 RYIRKKYK----LLIG---------ERTAEEIKIKIGTAFPGAREEEMEIRGRDLVTGLPKTITVTSEEIREALKEPVSA 254 (336)
T ss_pred HHHHHHhc----hhcC---------HHHHHHHHHHhcccccccCCcEEEEecccccCCCceEEEECHHHHHHHHHHHHHH
Confidence 99987663 2221 267999999986431 1223332 234456778999999999999999999
Q ss_pred HHHHHHHHHHhcC--CCCCCcC-EEEEecCCCChHHHHHHHHhhcCCCCCCcCChhhHHHhHHHHHhhHh
Q 004210 315 MRIPCQKALAGSG--LNVEKIH-SVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQCAML 381 (768)
Q Consensus 315 i~~~i~~~l~~~~--~~~~~i~-~V~LvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~Gaa~~a~~l 381 (768)
+...|+++|+.++ +....++ .|+|+||+|++|.|++.|++.|+.++....||++|||+|||+++..+
T Consensus 255 i~~~i~~~l~~~~~~~~~~~i~~~IvL~GG~s~ipgi~e~l~~~~~~~v~~~~~P~~ava~Gaa~~~~~~ 324 (336)
T PRK13928 255 IVQAVKSVLERTPPELSADIIDRGIIMTGGGALLHGLDKLLAEETKVPVYIAEDPISCVALGTGKMLENI 324 (336)
T ss_pred HHHHHHHHHHhCCccccHhhcCCCEEEECcccchhhHHHHHHHHHCCCceecCCHHHHHHHHHHHHHhch
Confidence 9999999999986 4455677 79999999999999999999999988889999999999999998764
No 22
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=100.00 E-value=9.8e-38 Score=335.19 Aligned_cols=305 Identities=22% Similarity=0.310 Sum_probs=241.5
Q ss_pred EEEEEcCccceEEEEEEcCCceEEEeCCCCCccceEEEEeeCCc---eeecHHHHhhhhhCCcchHhHHHHhcCCCCCCh
Q 004210 3 VVGFDIGNENCVIAAVKQGGMLDVLLNDESKRETPTVVSFSEKQ---RFLGSAGAASAMMNPKSTISQVKRLLGRKFRED 79 (768)
Q Consensus 3 viGID~Gtt~s~va~~~~~~~~~i~~n~~~~r~~Ps~v~~~~~~---~~~G~~A~~~~~~~p~~~~~~~k~llg~~~~~~ 79 (768)
.+||||||++++| +.++. . ++.|+ ||+|+|+.++ ..+|.+|+.+..+.|.++... + .+
T Consensus 6 ~~giDlGt~~~~i--~~~~~-~-~~~~~------ps~va~~~~~~~~~~vG~~A~~~~~~~p~~~~~~--~----pi--- 66 (335)
T PRK13929 6 EIGIDLGTANILV--YSKNK-G-IILNE------PSVVAVDTETKAVLAIGTEAKNMIGKTPGKIVAV--R----PM--- 66 (335)
T ss_pred eEEEEcccccEEE--EECCC-c-EEecC------CcEEEEECCCCeEEEeCHHHHHhhhcCCCcEEEE--e----cC---
Confidence 5899999999986 44554 2 35564 9999998543 478999988887777665321 1 11
Q ss_pred HHHhhhccCCceeeecCCCCEEEEEEecCceeEecHHHHHHHHHHHHHHHHHhhccCCCC--eEEEEeCCCCCHHHHHHH
Q 004210 80 DVQKDLKLFPFETCESHDGGILIMLEYLGETHKFTPVQILGMLLSNLKQITEKNIKIPIS--NCVIGVPCYLTDVQRRAY 157 (768)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~el~a~~L~~l~~~a~~~~~~~~~--~~VitVP~~~~~~qr~~l 157 (768)
.+|. +.--++++.+|++++..++..++..+. .+|||||++|+..||+++
T Consensus 67 ----------------~~G~-------------I~d~d~~~~~l~~~~~~~~~~l~~~~~~~~vvitvP~~~~~~~R~~l 117 (335)
T PRK13929 67 ----------------KDGV-------------IADYDMTTDLLKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAI 117 (335)
T ss_pred ----------------CCCc-------------cCCHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCHHHHHHH
Confidence 1232 112268899999999988777765553 799999999999999999
Q ss_pred HHHHHHcCCcceEeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCCchhhHHH
Q 004210 158 LDAATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDE 237 (768)
Q Consensus 158 ~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~d~ 237 (768)
.+|++.||++++.+++||+|||++|+... ..+..++|||+||||||++++++.+ ++ ..++..+||++||.
T Consensus 118 ~~a~~~ag~~~~~li~ep~Aaa~~~g~~~-----~~~~~~lvvDiG~gtt~v~vi~~~~----~~-~~~~~~~GG~~id~ 187 (335)
T PRK13929 118 SDAVKNCGAKNVHLIEEPVAAAIGADLPV-----DEPVANVVVDIGGGTTEVAIISFGG----VV-SCHSIRIGGDQLDE 187 (335)
T ss_pred HHHHHHcCCCeeEeecCHHHHHHhcCCCc-----CCCceEEEEEeCCCeEEEEEEEeCC----EE-EecCcCCHHHHHHH
Confidence 99999999999999999999999997643 3467899999999999999998753 22 33467899999999
Q ss_pred HHHHHHHHHHhhhcccCccCChHHHHHHHHHHHHHhhhccCCC----cccEEEe--ccccCcceEEEecHHHHHHHHHHH
Q 004210 238 VLSSYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANA----EAPLNIE--CLMNEKDVKGFIRREEFEKLSSSL 311 (768)
Q Consensus 238 ~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~----~~~i~i~--~l~~~~d~~~~itr~~fe~~~~~~ 311 (768)
.|++++...+ +.... ...||++|+.++... ...+.+. .+..+.+..+.+++++|+++|.++
T Consensus 188 ~l~~~l~~~~----~~~~~---------~~~AE~iK~~l~~~~~~~~~~~~~v~g~~~~~~~p~~i~i~~~~~~~~i~~~ 254 (335)
T PRK13929 188 DIVSFVRKKY----NLLIG---------ERTAEQVKMEIGYALIEHEPETMEVRGRDLVTGLPKTITLESKEIQGAMRES 254 (335)
T ss_pred HHHHHHHHHh----CcCcC---------HHHHHHHHHHHcCCCCCCCCceEEEeCCccCCCCCeEEEEcHHHHHHHHHHH
Confidence 9999998654 33221 168999999997531 1223332 233455678999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCC--CCCcC-EEEEecCCCChHHHHHHHHhhcCCCCCCcCChhhHHHhHHHHHh
Q 004210 312 LERMRIPCQKALAGSGLN--VEKIH-SVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQC 378 (768)
Q Consensus 312 ~~~i~~~i~~~l~~~~~~--~~~i~-~V~LvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~Gaa~~a 378 (768)
+.++...|.++|++++.. .+.++ .|+|+||+|++|.++++|++.||.++....||+++|++||+..-
T Consensus 255 l~~i~~~i~~~L~~~~~~l~~~~~~~gIvLtGG~s~lpgl~e~l~~~~~~~v~~~~~P~~~Va~Ga~~~~ 324 (335)
T PRK13929 255 LLHILEAIRATLEDCPPELSGDIVDRGVILTGGGALLNGIKEWLSEEIVVPVHVAANPLESVAIGTGRSL 324 (335)
T ss_pred HHHHHHHHHHHHHhCCcccchhhcCCCEEEEchhhhhhhHHHHHHHHHCCCceeCCCHHHHHHHHHHHHH
Confidence 999999999999998643 35677 69999999999999999999999998888999999999999763
No 23
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=5.5e-35 Score=315.59 Aligned_cols=305 Identities=23% Similarity=0.351 Sum_probs=228.0
Q ss_pred EEEEEcCccceEEEEEEcCCceEEEeCCCCCccceEEEEeeCC-ce--eecHHHHhhhhhCCcchHhHHHHhcCCCCCCh
Q 004210 3 VVGFDIGNENCVIAAVKQGGMLDVLLNDESKRETPTVVSFSEK-QR--FLGSAGAASAMMNPKSTISQVKRLLGRKFRED 79 (768)
Q Consensus 3 viGID~Gtt~s~va~~~~~~~~~i~~n~~~~r~~Ps~v~~~~~-~~--~~G~~A~~~~~~~p~~~~~~~k~llg~~~~~~ 79 (768)
.+||||||++++++. .|... ++ .+||+|+|... +. ++|.+|..+..+.|.++...
T Consensus 7 ~igIDlGt~~~~i~~--~~~~~-~~-------~~ps~v~~~~~~~~~~~vG~~a~~~~~~~~~~~~~~------------ 64 (334)
T PRK13927 7 DLGIDLGTANTLVYV--KGKGI-VL-------NEPSVVAIRTDTKKVLAVGEEAKQMLGRTPGNIVAI------------ 64 (334)
T ss_pred eeEEEcCcceEEEEE--CCCcE-EE-------ecCCEEEEECCCCeEEEecHHHHHHhhcCCCCEEEE------------
Confidence 589999999999855 33313 33 26999999754 33 89999987765555442110
Q ss_pred HHHhhhccCCceeeecCCCCEEEEEEecCceeEec-HHHHHHHHHHHHHHHHHhhccCCCCeEEEEeCCCCCHHHHHHHH
Q 004210 80 DVQKDLKLFPFETCESHDGGILIMLEYLGETHKFT-PVQILGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDVQRRAYL 158 (768)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~-~~el~a~~L~~l~~~a~~~~~~~~~~~VitVP~~~~~~qr~~l~ 158 (768)
.|. .+|.+ ..+. .++++..++.++... .. ....+|+|||++|+..+|++++
T Consensus 65 --------~pi-----~~G~i----------~d~~~~~~ll~~~~~~~~~~----~~-~~~~~vi~vP~~~~~~~r~~~~ 116 (334)
T PRK13927 65 --------RPM-----KDGVI----------ADFDVTEKMLKYFIKKVHKN----FR-PSPRVVICVPSGITEVERRAVR 116 (334)
T ss_pred --------ecC-----CCCee----------cCHHHHHHHHHHHHHHHhhc----cC-CCCcEEEEeCCCCCHHHHHHHH
Confidence 111 12321 1221 244555554443322 11 1238999999999999999999
Q ss_pred HHHHHcCCcceEeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCCchhhHHHH
Q 004210 159 DAATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEV 238 (768)
Q Consensus 159 ~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~d~~ 238 (768)
.|++.||++.+.+++||+|||++|+... ..+..++|||+||||||++++++.+. ...++..+||++||+.
T Consensus 117 ~a~~~ag~~~~~li~ep~aaa~~~g~~~-----~~~~~~lvvDiGggttdvs~v~~~~~-----~~~~~~~lGG~~id~~ 186 (334)
T PRK13927 117 ESALGAGAREVYLIEEPMAAAIGAGLPV-----TEPTGSMVVDIGGGTTEVAVISLGGI-----VYSKSVRVGGDKFDEA 186 (334)
T ss_pred HHHHHcCCCeeccCCChHHHHHHcCCcc-----cCCCeEEEEEeCCCeEEEEEEecCCe-----EeeCCcCChHHHHHHH
Confidence 9999999999999999999999998643 34567899999999999999987632 1334678999999999
Q ss_pred HHHHHHHHHhhhcccCccCChHHHHHHHHHHHHHhhhccCCCc----ccEEE--eccccCcceEEEecHHHHHHHHHHHH
Q 004210 239 LSSYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANAE----APLNI--ECLMNEKDVKGFIRREEFEKLSSSLL 312 (768)
Q Consensus 239 l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~----~~i~i--~~l~~~~d~~~~itr~~fe~~~~~~~ 312 (768)
|.+++.+++. .... ...||++|+.++.... ..+.+ +.+..+.+..+.|+|++|++++.+.+
T Consensus 187 l~~~l~~~~~----~~~~---------~~~ae~iK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~~~ 253 (334)
T PRK13927 187 IINYVRRNYN----LLIG---------ERTAERIKIEIGSAYPGDEVLEMEVRGRDLVTGLPKTITISSNEIREALQEPL 253 (334)
T ss_pred HHHHHHHHhC----cCcC---------HHHHHHHHHHhhccCCCCCCceEEEeCcccCCCCCeEEEECHHHHHHHHHHHH
Confidence 9999986653 2221 1578999999874322 22333 23345566788999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCC-CC-cC-EEEEecCCCChHHHHHHHHhhcCCCCCCcCChhhHHHhHHHHHhhH
Q 004210 313 ERMRIPCQKALAGSGLNV-EK-IH-SVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQCAM 380 (768)
Q Consensus 313 ~~i~~~i~~~l~~~~~~~-~~-i~-~V~LvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~Gaa~~a~~ 380 (768)
.++...|.++|++++... .+ ++ .|+|+||+|++|.++++|++.|+.++....||+++||+|||+++..
T Consensus 254 ~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipgl~~~l~~~~~~~v~~~~~P~~ava~Ga~~~~~~ 324 (334)
T PRK13927 254 SAIVEAVKVALEQTPPELAADIVDRGIVLTGGGALLRGLDKLLSEETGLPVHVAEDPLTCVARGTGKALEN 324 (334)
T ss_pred HHHHHHHHHHHHHCCchhhhhhhcCCEEEECchhhhhHHHHHHHHHHCCCcEecCCHHHHHHHHHHHHHhh
Confidence 999999999999986432 23 34 5999999999999999999999988989999999999999999865
No 24
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=100.00 E-value=9.6e-35 Score=312.99 Aligned_cols=305 Identities=22% Similarity=0.326 Sum_probs=224.8
Q ss_pred EEEEcCccceEEEEEEcCCceEEEeCCCCCccceEEEEeeCC-----c--eeecHHHHhhhhhCCcchHhHHHHhcCCCC
Q 004210 4 VGFDIGNENCVIAAVKQGGMLDVLLNDESKRETPTVVSFSEK-----Q--RFLGSAGAASAMMNPKSTISQVKRLLGRKF 76 (768)
Q Consensus 4 iGID~Gtt~s~va~~~~~~~~~i~~n~~~~r~~Ps~v~~~~~-----~--~~~G~~A~~~~~~~p~~~~~~~k~llg~~~ 76 (768)
+||||||+||+|+....| . ++ ..||+|+|..+ + ..+|.+|.....+.|.+.- +++
T Consensus 5 ~giDlGt~~s~i~~~~~~--~-~~-------~~psvv~~~~~~~~~~~~~~~vG~~A~~~~~~~~~~~~--~~~------ 66 (333)
T TIGR00904 5 IGIDLGTANTLVYVKGRG--I-VL-------NEPSVVAIRTDRDAKTKSILAVGHEAKEMLGKTPGNIV--AIR------ 66 (333)
T ss_pred eEEecCcceEEEEECCCC--E-EE-------ecCCEEEEecCCCCCCCeEEEEhHHHHHhhhcCCCCEE--EEe------
Confidence 899999999999885332 2 33 36999999843 3 5789999765444443321 011
Q ss_pred CChHHHhhhccCCceeeecCCCCEEEEEEecCceeEec-HHHHHHHHHHHHHHHHHhhccCCCCeEEEEeCCCCCHHHHH
Q 004210 77 REDDVQKDLKLFPFETCESHDGGILIMLEYLGETHKFT-PVQILGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDVQRR 155 (768)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~-~~el~a~~L~~l~~~a~~~~~~~~~~~VitVP~~~~~~qr~ 155 (768)
| ..+|.+ ..+. .++++..+|..+.... +.....+|+|||++|+..+|+
T Consensus 67 ------------p-----i~~G~i----------~d~~~~~~~~~~~l~~~~~~~----~~~~~~~vitvP~~~~~~~r~ 115 (333)
T TIGR00904 67 ------------P-----MKDGVI----------ADFEVTEKMIKYFIKQVHSRK----SFFKPRIVICVPSGITPVERR 115 (333)
T ss_pred ------------c-----CCCCEE----------EcHHHHHHHHHHHHHHHhccc----ccCCCcEEEEeCCCCCHHHHH
Confidence 1 112321 1121 2445555554443321 112238999999999999999
Q ss_pred HHHHHHHHcCCcceEeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCCchhhH
Q 004210 156 AYLDAATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDF 235 (768)
Q Consensus 156 ~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~ 235 (768)
++.+|++.||++++.+++||+|||++|+... ..+..++|||+||||||++++++.+- ...++..+||++|
T Consensus 116 ~~~~~~~~ag~~~~~li~ep~aaa~~~g~~~-----~~~~~~lVvDiG~gttdvs~v~~~~~-----~~~~~~~lGG~di 185 (333)
T TIGR00904 116 AVKESALSAGAREVYLIEEPMAAAIGAGLPV-----EEPTGSMVVDIGGGTTEVAVISLGGI-----VVSRSIRVGGDEF 185 (333)
T ss_pred HHHHHHHHcCCCeEEEecCHHHHHHhcCCcc-----cCCceEEEEEcCCCeEEEEEEEeCCE-----EecCCccchHHHH
Confidence 9999999999999999999999999998643 34677999999999999999987631 1234678999999
Q ss_pred HHHHHHHHHHHHhhhcccCccCChHHHHHHHHHHHHHhhhccCCCc-----ccEEEec--cccCcceEEEecHHHHHHHH
Q 004210 236 DEVLSSYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANAE-----APLNIEC--LMNEKDVKGFIRREEFEKLS 308 (768)
Q Consensus 236 d~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~-----~~i~i~~--l~~~~d~~~~itr~~fe~~~ 308 (768)
|+.|++++..++. .... +..||++|+.++.... ..+.+.. ...+......|++++|.+++
T Consensus 186 d~~l~~~l~~~~~----~~~~---------~~~ae~lK~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i 252 (333)
T TIGR00904 186 DEAIINYIRRTYN----LLIG---------EQTAERIKIEIGSAYPLNDEPRKMEVRGRDLVTGLPRTIEITSVEVREAL 252 (333)
T ss_pred HHHHHHHHHHHhc----ccCC---------HHHHHHHHHHHhccccccccccceeecCccccCCCCeEEEECHHHHHHHH
Confidence 9999999986652 2221 2689999999975321 1222211 11234456789999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCC-CCc-C-EEEEecCCCChHHHHHHHHhhcCCCCCCcCChhhHHHhHHHHHhhH
Q 004210 309 SSLLERMRIPCQKALAGSGLNV-EKI-H-SVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQCAM 380 (768)
Q Consensus 309 ~~~~~~i~~~i~~~l~~~~~~~-~~i-~-~V~LvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~Gaa~~a~~ 380 (768)
.+.+.++...+.+.|+.++... .++ + .|+|+||+|++|.+++.|++.||.++....||+++||.||++++..
T Consensus 253 ~~~~~~i~~~i~~~l~~~~~~~~~~l~~~~IvL~GGss~ipgl~e~l~~~~~~~v~~~~~P~~~va~Ga~~~~~~ 327 (333)
T TIGR00904 253 QEPVNQIVEAVKRTLEKTPPELAADIVERGIVLTGGGALLRNLDKLLSKETGLPVIVADDPLLCVAKGTGKALED 327 (333)
T ss_pred HHHHHHHHHHHHHHHHhCCchhhhhhccCCEEEECcccchhhHHHHHHHHHCCCceecCChHHHHHHHHHHHHhC
Confidence 9999999999999999976432 244 3 7999999999999999999999999999999999999999998654
No 25
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=1e-33 Score=306.15 Aligned_cols=308 Identities=23% Similarity=0.324 Sum_probs=228.8
Q ss_pred EEEEEcCccceEEEEEEcCCceEEEeCCCCCccceEEEEeeCC-c--eeecHHHHhhhhhCCcchHhHHHHhcCCCCCCh
Q 004210 3 VVGFDIGNENCVIAAVKQGGMLDVLLNDESKRETPTVVSFSEK-Q--RFLGSAGAASAMMNPKSTISQVKRLLGRKFRED 79 (768)
Q Consensus 3 viGID~Gtt~s~va~~~~~~~~~i~~n~~~~r~~Ps~v~~~~~-~--~~~G~~A~~~~~~~p~~~~~~~k~llg~~~~~~ 79 (768)
.+||||||++|+++.+ |.++ ++ .+||+|++... + .++|.+|.....+.|.+.-.
T Consensus 10 ~vgiDlGt~~t~i~~~--~~~~-~~-------~~ps~v~~~~~~~~~~~vG~~A~~~~~~~~~~~~~------------- 66 (335)
T PRK13930 10 DIGIDLGTANTLVYVK--GKGI-VL-------NEPSVVAIDTKTGKVLAVGEEAKEMLGRTPGNIEA------------- 66 (335)
T ss_pred ceEEEcCCCcEEEEEC--CCCE-EE-------ecCCEEEEECCCCeEEEEcHHHHHhhhcCCCCeEE-------------
Confidence 3899999999999986 3312 22 25999999752 2 48999997665444433210
Q ss_pred HHHhhhccCCceeeecCCCCEEEEEEecCceeEecHHHHHHHHHHHHHHHHHhhccCCCCeEEEEeCCCCCHHHHHHHHH
Q 004210 80 DVQKDLKLFPFETCESHDGGILIMLEYLGETHKFTPVQILGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDVQRRAYLD 159 (768)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~el~a~~L~~l~~~a~~~~~~~~~~~VitVP~~~~~~qr~~l~~ 159 (768)
..|+ .+|.+ ..+ +....+++++.+.+..........+|+|+|++|+..+|+++.+
T Consensus 67 -------~~pi-----~~G~i----------~d~---~~~e~ll~~~~~~~~~~~~~~~~~vvit~P~~~~~~~r~~~~~ 121 (335)
T PRK13930 67 -------IRPL-----KDGVI----------ADF---EATEAMLRYFIKKARGRRFFRKPRIVICVPSGITEVERRAVRE 121 (335)
T ss_pred -------eecC-----CCCeE----------cCH---HHHHHHHHHHHHHHhhcccCCCCcEEEEECCCCCHHHHHHHHH
Confidence 0111 13321 111 3355556665544433333346789999999999999999999
Q ss_pred HHHHcCCcceEeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCCchhhHHHHH
Q 004210 160 AATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEVL 239 (768)
Q Consensus 160 Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~d~~l 239 (768)
|++.+|++++.+++||+|||++|+... ..+..++|||+||||||++++.... ++ ..+...+||++||+.|
T Consensus 122 ~~e~~g~~~~~lv~ep~AAa~a~g~~~-----~~~~~~lVvDiG~gttdvs~v~~g~----~~-~~~~~~lGG~~id~~l 191 (335)
T PRK13930 122 AAEHAGAREVYLIEEPMAAAIGAGLPV-----TEPVGNMVVDIGGGTTEVAVISLGG----IV-YSESIRVAGDEMDEAI 191 (335)
T ss_pred HHHHcCCCeEEecccHHHHHHhcCCCc-----CCCCceEEEEeCCCeEEEEEEEeCC----EE-eecCcCchhHHHHHHH
Confidence 999999999999999999999987643 2345679999999999999998652 22 2457899999999999
Q ss_pred HHHHHHHHhhhcccCccCChHHHHHHHHHHHHHhhhccCCCc----ccEEEe--ccccCcceEEEecHHHHHHHHHHHHH
Q 004210 240 SSYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANAE----APLNIE--CLMNEKDVKGFIRREEFEKLSSSLLE 313 (768)
Q Consensus 240 ~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~----~~i~i~--~l~~~~d~~~~itr~~fe~~~~~~~~ 313 (768)
++++..++ +.... ...||++|+.++.... ..+.+. .+..+.+..+.|++++|++++.+.++
T Consensus 192 ~~~l~~~~----~~~~~---------~~~ae~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~~~~ 258 (335)
T PRK13930 192 VQYVRRKY----NLLIG---------ERTAEEIKIEIGSAYPLDEEESMEVRGRDLVTGLPKTIEISSEEVREALAEPLQ 258 (335)
T ss_pred HHHHHHHh----CCCCC---------HHHHHHHHHHhhcCcCCCCCceEEEECccCCCCCCeeEEECHHHHHHHHHHHHH
Confidence 99998764 22221 1679999999975432 123332 22234456789999999999999999
Q ss_pred HHHHHHHHHHHhcCCC--CCCcC-EEEEecCCCChHHHHHHHHhhcCCCCCCcCChhhHHHhHHHHHhhHh
Q 004210 314 RMRIPCQKALAGSGLN--VEKIH-SVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQCAML 381 (768)
Q Consensus 314 ~i~~~i~~~l~~~~~~--~~~i~-~V~LvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~Gaa~~a~~l 381 (768)
++...+.++|+.++.. ...++ .|+|+||+|++|.++++|++.|+.++....+|++++|+||++.+...
T Consensus 259 ~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipg~~~~l~~~~~~~v~~~~~p~~ava~Ga~~~~~~~ 329 (335)
T PRK13930 259 QIVEAVKSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSEETGLPVHIAEDPLTCVARGTGKALENL 329 (335)
T ss_pred HHHHHHHHHHHhCCHHHhhHHHhCCEEEECchhcchhHHHHHHHHHCCCceecCCHHHHHHHHHHHHHhCh
Confidence 9999999999987532 22345 49999999999999999999999888888899999999999987643
No 26
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=100.00 E-value=1.6e-31 Score=279.69 Aligned_cols=306 Identities=23% Similarity=0.334 Sum_probs=217.3
Q ss_pred EEEEEcCccceEEEEEEcCCceEEEeCCCCCccceEEEEeeCCc---eeecHHHHhhhhhCCcchHhHHHHhcCCCCCCh
Q 004210 3 VVGFDIGNENCVIAAVKQGGMLDVLLNDESKRETPTVVSFSEKQ---RFLGSAGAASAMMNPKSTISQVKRLLGRKFRED 79 (768)
Q Consensus 3 viGID~Gtt~s~va~~~~~~~~~i~~n~~~~r~~Ps~v~~~~~~---~~~G~~A~~~~~~~p~~~~~~~k~llg~~~~~~ 79 (768)
-+||||||+++.|+. ...+ ++.++ ||+|+++... ..+|.+|.....+.|.+.
T Consensus 3 ~igIDLGT~~t~i~~-~~~G---iv~~e------pSvVA~~~~~~~i~avG~~A~~m~gktp~~i--------------- 57 (326)
T PF06723_consen 3 DIGIDLGTSNTRIYV-KGKG---IVLNE------PSVVAYDKDTGKILAVGDEAKAMLGKTPDNI--------------- 57 (326)
T ss_dssp EEEEEE-SSEEEEEE-TTTE---EEEEE------ES-EEEETTT--EEEESHHHHTTTTS-GTTE---------------
T ss_pred ceEEecCcccEEEEE-CCCC---EEEec------CcEEEEECCCCeEEEEhHHHHHHhhcCCCcc---------------
Confidence 589999999999965 3333 56665 9999998653 368999954443333221
Q ss_pred HHHhhhccCCceeeecCCCCEEEEEEecCceeEecHHHHHHHHHHHHHHHHHhhccCCCCeEEEEeCCCCCHHHHHHHHH
Q 004210 80 DVQKDLKLFPFETCESHDGGILIMLEYLGETHKFTPVQILGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDVQRRAYLD 159 (768)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~el~a~~L~~l~~~a~~~~~~~~~~~VitVP~~~~~~qr~~l~~ 159 (768)
.+ +.+..+|.+ .=-++...+|+++.+.+.......-..++|+||+.-++.+|+++.+
T Consensus 58 ~~----------~~Pl~~GvI-------------~D~~~~~~~l~~~l~k~~~~~~~~~p~vvi~vP~~~T~verrA~~~ 114 (326)
T PF06723_consen 58 EV----------VRPLKDGVI-------------ADYEAAEEMLRYFLKKALGRRSFFRPRVVICVPSGITEVERRALID 114 (326)
T ss_dssp EE----------E-SEETTEE-------------SSHHHHHHHHHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHH
T ss_pred EE----------EccccCCcc-------------cCHHHHHHHHHHHHHHhccCCCCCCCeEEEEeCCCCCHHHHHHHHH
Confidence 10 111224432 1124566666666665544322345679999999999999999999
Q ss_pred HHHHcCCcceEeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCCchhhHHHHH
Q 004210 160 AATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEVL 239 (768)
Q Consensus 160 Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~d~~l 239 (768)
|+..||.+.+.|+.||.|||++.++.- ..+...||+|+||||||++++... .+ ..+. ...+||++||+.|
T Consensus 115 a~~~aGa~~V~li~ep~AaAiGaGl~i-----~~~~g~miVDIG~GtTdiavislg--gi--v~s~-si~~gG~~~DeaI 184 (326)
T PF06723_consen 115 AARQAGARKVYLIEEPIAAAIGAGLDI-----FEPRGSMIVDIGGGTTDIAVISLG--GI--VASR-SIRIGGDDIDEAI 184 (326)
T ss_dssp HHHHTT-SEEEEEEHHHHHHHHTT--T-----TSSS-EEEEEE-SS-EEEEEEETT--EE--EEEE-EES-SHHHHHHHH
T ss_pred HHHHcCCCEEEEecchHHHHhcCCCCC-----CCCCceEEEEECCCeEEEEEEECC--CE--EEEE-EEEecCcchhHHH
Confidence 999999999999999999999988653 457889999999999999999754 33 3333 4689999999999
Q ss_pred HHHHHHHHhhhcccCccCChHHHHHHHHHHHHHhhhccCCC----cccEEEe--ccccCcceEEEecHHHHHHHHHHHHH
Q 004210 240 SSYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANA----EAPLNIE--CLMNEKDVKGFIRREEFEKLSSSLLE 313 (768)
Q Consensus 240 ~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~----~~~i~i~--~l~~~~d~~~~itr~~fe~~~~~~~~ 313 (768)
.+|+.++| ++.+.. ..||++|+.++.-. ...+.+. .+..+....+.|+.+++.+.|.+.+.
T Consensus 185 ~~~ir~~y----~l~Ig~---------~tAE~iK~~~g~~~~~~~~~~~~v~Grd~~tGlP~~~~i~~~ev~~ai~~~~~ 251 (326)
T PF06723_consen 185 IRYIREKY----NLLIGE---------RTAEKIKIEIGSASPPEEEESMEVRGRDLITGLPKSIEITSSEVREAIEPPVD 251 (326)
T ss_dssp HHHHHHHH----SEE--H---------HHHHHHHHHH-BSS--HHHHEEEEEEEETTTTCEEEEEEEHHHHHHHHHHHHH
T ss_pred HHHHHHhh----CcccCH---------HHHHHHHHhcceeeccCCCceEEEECccccCCCcEEEEEcHHHHHHHHHHHHH
Confidence 99999876 344444 88999999986432 2234443 34677888999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCC-CCc--CEEEEecCCCChHHHHHHHHhhcCCCCCCcCChhhHHHhHHHHHhh
Q 004210 314 RMRIPCQKALAGSGLNV-EKI--HSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQCA 379 (768)
Q Consensus 314 ~i~~~i~~~l~~~~~~~-~~i--~~V~LvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~Gaa~~a~ 379 (768)
+|...|+++|++..-.. .|| ++|+|+||+++++++.+.|++.+|.++....||..|||.||.....
T Consensus 252 ~I~~~i~~~Le~~pPel~~DI~~~GI~LtGGga~l~Gl~~~i~~~~~~pV~va~~P~~~va~G~~~~l~ 320 (326)
T PF06723_consen 252 QIVEAIKEVLEKTPPELAADILENGIVLTGGGALLRGLDEYISEETGVPVRVADDPLTAVARGAGKLLE 320 (326)
T ss_dssp HHHHHHHHHHHTS-HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHHSS-EEE-SSTTTHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHCCEEEEChhhhhccHHHHHHHHHCCCEEEcCCHHHHHHHHHHHHHh
Confidence 99999999999852111 133 5799999999999999999999999999999999999999986553
No 27
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=99.97 E-value=7.3e-30 Score=259.62 Aligned_cols=200 Identities=18% Similarity=0.275 Sum_probs=172.8
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCcceEeccchHHHHHHhhhcccCCCCCCCc
Q 004210 116 VQILGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDVQRRAYLDAATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPT 195 (768)
Q Consensus 116 ~el~a~~L~~l~~~a~~~~~~~~~~~VitVP~~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~ 195 (768)
-+..+++|+++++.++..++.++.++|+|||++|++.||+++.+|++.||++++.+++||.|+|++|+..
T Consensus 39 ~~~~~~~l~~l~~~a~~~~g~~~~~vvisVP~~~~~~~r~a~~~a~~~aGl~~~~li~ep~Aaa~~~~~~---------- 108 (239)
T TIGR02529 39 FLGAVEIVRRLKDTLEQKLGIELTHAATAIPPGTIEGDPKVIVNVIESAGIEVLHVLDEPTAAAAVLQIK---------- 108 (239)
T ss_pred hHHHHHHHHHHHHHHHHHhCCCcCcEEEEECCCCCcccHHHHHHHHHHcCCceEEEeehHHHHHHHhcCC----------
Confidence 3678899999999998888888999999999999999999999999999999999999999999988632
Q ss_pred EEEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCCchhhHHHHHHHHHHHHHhhhcccCccCChHHHHHHHHHHHHHhhh
Q 004210 196 YVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEVLSSYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKV 275 (768)
Q Consensus 196 ~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~ 275 (768)
..+|+|+||||||+++++. |. ++.+. +..+||++||+.|++.+ +++. .+||++|+.
T Consensus 109 ~~~vvDiGggtt~i~i~~~--G~--i~~~~-~~~~GG~~it~~Ia~~~--------~i~~-----------~~AE~~K~~ 164 (239)
T TIGR02529 109 NGAVVDVGGGTTGISILKK--GK--VIYSA-DEPTGGTHMSLVLAGAY--------GISF-----------EEAEEYKRG 164 (239)
T ss_pred CcEEEEeCCCcEEEEEEEC--Ce--EEEEE-eeecchHHHHHHHHHHh--------CCCH-----------HHHHHHHHh
Confidence 2599999999999999764 43 33333 67899999999887544 2322 789999987
Q ss_pred ccCCCcccEEEeccccCcceEEEecHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCEEEEecCCCChHHHHHHHHhh
Q 004210 276 LSANAEAPLNIECLMNEKDVKGFIRREEFEKLSSSLLERMRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSL 355 (768)
Q Consensus 276 Ls~~~~~~i~i~~l~~~~d~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~ 355 (768)
++. .+++.+++.++++++...+++.|++. .++.|+|+||+|++|++++.+++.
T Consensus 165 ~~~----------------------~~~~~~~i~~~~~~i~~~i~~~l~~~-----~~~~v~LtGG~a~ipgl~e~l~~~ 217 (239)
T TIGR02529 165 HKD----------------------EEEIFPVVKPVYQKMASIVKRHIEGQ-----GVKDLYLVGGACSFSGFADVFEKQ 217 (239)
T ss_pred cCC----------------------HHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCEEEEECchhcchhHHHHHHHH
Confidence 541 45677899999999999999999865 457899999999999999999999
Q ss_pred cCCCCCCcCChhhHHHhHHHH
Q 004210 356 FNREPGRTINASECVARGCAL 376 (768)
Q Consensus 356 fg~~v~~~~n~~eava~Gaa~ 376 (768)
||.++..+.||++++|.|||+
T Consensus 218 lg~~v~~~~~P~~~va~Gaa~ 238 (239)
T TIGR02529 218 LGLNVIKPQHPLYVTPLGIAM 238 (239)
T ss_pred hCCCcccCCCCCeehhheeec
Confidence 999999999999999999986
No 28
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=99.97 E-value=1.1e-28 Score=246.91 Aligned_cols=310 Identities=26% Similarity=0.376 Sum_probs=241.5
Q ss_pred eEEEEEcCccceEEEEEEcCCceEEEeCCCCCccceEEEEeeC--Cc---eeecHHHHhhhhhCCcchHhHHHHhcCCCC
Q 004210 2 SVVGFDIGNENCVIAAVKQGGMLDVLLNDESKRETPTVVSFSE--KQ---RFLGSAGAASAMMNPKSTISQVKRLLGRKF 76 (768)
Q Consensus 2 ~viGID~Gtt~s~va~~~~~~~~~i~~n~~~~r~~Ps~v~~~~--~~---~~~G~~A~~~~~~~p~~~~~~~k~llg~~~ 76 (768)
..+|||+||.|+.|+.- ..+ |++|+ ||+|++.. +. ..+|.+| |+++|+..
T Consensus 7 ~diGIDLGTanTlV~~k-~kg---IVl~e------PSVVAi~~~~~~~~v~aVG~eA---------------K~MlGrTP 61 (342)
T COG1077 7 NDIGIDLGTANTLVYVK-GKG---IVLNE------PSVVAIESEGKTKVVLAVGEEA---------------KQMLGRTP 61 (342)
T ss_pred ccceeeecccceEEEEc-Cce---EEecC------ceEEEEeecCCCceEEEehHHH---------------HHHhccCC
Confidence 36899999999999885 444 78888 99999987 32 2689999 67777766
Q ss_pred CChHHHhhhccCCceeeecCCCCEEEEEEecCceeEecHHHHHHHHHHHHHHHHHhhcc-CCCCeEEEEeCCCCCHHHHH
Q 004210 77 REDDVQKDLKLFPFETCESHDGGILIMLEYLGETHKFTPVQILGMLLSNLKQITEKNIK-IPISNCVIGVPCYLTDVQRR 155 (768)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~el~a~~L~~l~~~a~~~~~-~~~~~~VitVP~~~~~~qr~ 155 (768)
.+.. .+.+..+|.+. .| ++...+|+|+.+......+ .....+++.||..-++-+|+
T Consensus 62 ~ni~----------aiRPmkdGVIA----------d~---~~te~ml~~fik~~~~~~~~~~~prI~i~vP~g~T~VErr 118 (342)
T COG1077 62 GNIV----------AIRPMKDGVIA----------DF---EVTELMLKYFIKKVHKNGSSFPKPRIVICVPSGITDVERR 118 (342)
T ss_pred CCce----------EEeecCCcEee----------cH---HHHHHHHHHHHHHhccCCCCCCCCcEEEEecCCccHHHHH
Confidence 5422 13344456531 22 4556666777666543222 34456999999999999999
Q ss_pred HHHHHHHHcCCcceEeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCCchhhH
Q 004210 156 AYLDAATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDF 235 (768)
Q Consensus 156 ~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~ 235 (768)
|+++|++.||...+.++.||.|||++.++ |...+..-+|||+||||||++++.+.+ +.... ...+||+.|
T Consensus 119 Ai~ea~~~aGa~~V~lieEp~aAAIGagl-----pi~ep~G~mvvDIGgGTTevaVISlgg----iv~~~-Sirv~GD~~ 188 (342)
T COG1077 119 AIKEAAESAGAREVYLIEEPMAAAIGAGL-----PIMEPTGSMVVDIGGGTTEVAVISLGG----IVSSS-SVRVGGDKM 188 (342)
T ss_pred HHHHHHHhccCceEEEeccHHHHHhcCCC-----cccCCCCCEEEEeCCCceeEEEEEecC----EEEEe-eEEEecchh
Confidence 99999999999999999999999998765 335677789999999999999999863 22222 467999999
Q ss_pred HHHHHHHHHHHHhhhcccCccCChHHHHHHHHHHHHHhhhccCC-C-------cccEEEeccccCcceEEEecHHHHHHH
Q 004210 236 DEVLSSYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSAN-A-------EAPLNIECLMNEKDVKGFIRREEFEKL 307 (768)
Q Consensus 236 d~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~-~-------~~~i~i~~l~~~~d~~~~itr~~fe~~ 307 (768)
|+.+.+|+.++| ++-+.. +.||++|...... . +.++.-..+..+..-.++++.++..+.
T Consensus 189 De~Ii~yvr~~~----nl~IGe---------~taE~iK~eiG~a~~~~~~~~~~~eV~Grdl~~GlPk~i~i~s~ev~ea 255 (342)
T COG1077 189 DEAIIVYVRKKY----NLLIGE---------RTAEKIKIEIGSAYPEEEDEELEMEVRGRDLVTGLPKTITINSEEIAEA 255 (342)
T ss_pred hHHHHHHHHHHh----CeeecH---------HHHHHHHHHhcccccccCCccceeeEEeeecccCCCeeEEEcHHHHHHH
Confidence 999999998765 455555 6789999887421 1 122333455677788899999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcC--CCCCCcC-EEEEecCCCChHHHHHHHHhhcCCCCCCcCChhhHHHhHHHHHhhHhc
Q 004210 308 SSSLLERMRIPCQKALAGSG--LNVEKIH-SVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQCAMLS 382 (768)
Q Consensus 308 ~~~~~~~i~~~i~~~l~~~~--~~~~~i~-~V~LvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~Gaa~~a~~ls 382 (768)
+++.+++|.+.++..|+... +..+-++ .++|+||++.+..+.+.|++..+.++....+|-.|||.|+......+.
T Consensus 256 l~~~v~~Iveair~~Le~tpPeL~~DI~ergivltGGGalLrglD~~i~~et~~pv~ia~~pL~~Va~G~G~~le~~~ 333 (342)
T COG1077 256 LEEPLNGIVEAIRLVLEKTPPELAADIVERGIVLTGGGALLRGLDRLLSEETGVPVIIADDPLTCVAKGTGKALEALD 333 (342)
T ss_pred HHHHHHHHHHHHHHHHhhCCchhcccHhhCceEEecchHHhcCchHhHHhccCCeEEECCChHHHHHhccchhhhhhH
Confidence 99999999999999999953 3332234 499999999999999999999999999999999999999998777654
No 29
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=99.95 E-value=1.5e-26 Score=239.59 Aligned_cols=202 Identities=20% Similarity=0.301 Sum_probs=173.8
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCcceEeccchHHHHHHhhhcccCCCCCCCc
Q 004210 116 VQILGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDVQRRAYLDAATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPT 195 (768)
Q Consensus 116 ~el~a~~L~~l~~~a~~~~~~~~~~~VitVP~~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~ 195 (768)
-+.....|+++++.++.+++..+..++++||++|+..+|+++.+|++.||+++..+++||.|++.+|...
T Consensus 66 i~~a~~~i~~~~~~ae~~~g~~i~~v~~~vp~~~~~~~~~~~~~~~~~aGl~~~~ii~e~~A~a~~~~~~---------- 135 (267)
T PRK15080 66 FIGAVTIVRRLKATLEEKLGRELTHAATAIPPGTSEGDPRAIINVVESAGLEVTHVLDEPTAAAAVLGID---------- 135 (267)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcCeEEEEeCCCCCchhHHHHHHHHHHcCCceEEEechHHHHHHHhCCC----------
Confidence 3556678888889898888888999999999999999999999999999999999999999999887531
Q ss_pred EEEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCCchhhHHHHHHHHHHHHHhhhcccCccCChHHHHHHHHHHHHHhhh
Q 004210 196 YVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEVLSSYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKV 275 (768)
Q Consensus 196 ~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~ 275 (768)
..+++|||||||+++++. ++.+ ..+ .+..+||++||+.|++++. ++ +.+||++|+.
T Consensus 136 ~~~vvDIGggtt~i~v~~--~g~~--~~~-~~~~~GG~~it~~Ia~~l~--------i~-----------~~eAE~lK~~ 191 (267)
T PRK15080 136 NGAVVDIGGGTTGISILK--DGKV--VYS-ADEPTGGTHMSLVLAGAYG--------IS-----------FEEAEQYKRD 191 (267)
T ss_pred CcEEEEeCCCcEEEEEEE--CCeE--EEE-ecccCchHHHHHHHHHHhC--------CC-----------HHHHHHHHhc
Confidence 158999999999999975 4443 333 3789999999999987752 21 2788999976
Q ss_pred ccCCCcccEEEeccccCcceEEEecHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCEEEEecCCCChHHHHHHHHhh
Q 004210 276 LSANAEAPLNIECLMNEKDVKGFIRREEFEKLSSSLLERMRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSL 355 (768)
Q Consensus 276 Ls~~~~~~i~i~~l~~~~d~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~ 355 (768)
++ +++++.++++++++++...+++.++.. .++.|+|+||+|++|.+++.+++.
T Consensus 192 ~~----------------------~~~~~~~ii~~~~~~i~~~i~~~l~~~-----~~~~IvLtGG~s~lpgl~e~l~~~ 244 (267)
T PRK15080 192 PK----------------------HHKEIFPVVKPVVEKMASIVARHIEGQ-----DVEDIYLVGGTCCLPGFEEVFEKQ 244 (267)
T ss_pred cC----------------------CHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCCEEEEECCcccchhHHHHHHHH
Confidence 53 357789999999999999999999864 578999999999999999999999
Q ss_pred cCCCCCCcCChhhHHHhHHHHHh
Q 004210 356 FNREPGRTINASECVARGCALQC 378 (768)
Q Consensus 356 fg~~v~~~~n~~eava~Gaa~~a 378 (768)
||.++....||+.++|.|||++|
T Consensus 245 lg~~v~~~~~P~~~~a~Gaa~~~ 267 (267)
T PRK15080 245 TGLPVHKPQHPLFVTPLGIALSC 267 (267)
T ss_pred hCCCcccCCCchHHHHHHHHhhC
Confidence 99999999999999999999875
No 30
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=99.90 E-value=6.7e-22 Score=216.31 Aligned_cols=194 Identities=17% Similarity=0.233 Sum_probs=153.8
Q ss_pred HHHHHHHHHHHHcCCcceEeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCCc
Q 004210 152 VQRRAYLDAATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLG 231 (768)
Q Consensus 152 ~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lG 231 (768)
...+.+.+|++.||+++..++.||.|+|++|.... .....++|+|+||||||++++.. +.+. ......+|
T Consensus 158 ~~v~~~~~~~~~aGl~~~~i~~~~~A~a~a~~~~~-----~~~~~~~vvDiG~gtt~i~i~~~--g~~~---~~~~i~~G 227 (371)
T TIGR01174 158 TILRNLVKCVERCGLEVDNIVLSGLASAIAVLTED-----EKELGVCLIDIGGGTTDIAVYTG--GSIR---YTKVIPIG 227 (371)
T ss_pred HHHHHHHHHHHHcCCCeeeEEEhhhhhhhhhcCcc-----hhcCCEEEEEeCCCcEEEEEEEC--CEEE---EEeeecch
Confidence 44677888999999999999999999999885422 34567999999999999999863 4332 12356899
Q ss_pred hhhHHHHHHHHHHHHHhhhcccCccCChHHHHHHHHHHHHHhhhccCC------CcccEEEeccccCcceEEEecHHHHH
Q 004210 232 GRDFDEVLSSYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSAN------AEAPLNIECLMNEKDVKGFIRREEFE 305 (768)
Q Consensus 232 G~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~------~~~~i~i~~l~~~~d~~~~itr~~fe 305 (768)
|++||+.|++.+. . .+.+||++|+.++.. .+..+.+..+. .+....|+|++|+
T Consensus 228 G~~it~~i~~~l~--------~-----------~~~~AE~lK~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~is~~~l~ 286 (371)
T TIGR01174 228 GNHITKDIAKALR--------T-----------PLEEAERIKIKYGCASIPLEGPDENIEIPSVG--ERPPRSLSRKELA 286 (371)
T ss_pred HHHHHHHHHHHhC--------C-----------CHHHHHHHHHHeeEecccCCCCCCEEEeccCC--CCCCeEEcHHHHH
Confidence 9999999876541 1 137899999999753 23455665542 4566799999999
Q ss_pred HHHHHHHHHHHHHHH-HHHHhcCCCCCCcCE-EEEecCCCChHHHHHHHHhhcCCCCCC------------cCChhhHHH
Q 004210 306 KLSSSLLERMRIPCQ-KALAGSGLNVEKIHS-VELVGSGSRIPAISRMLNSLFNREPGR------------TINASECVA 371 (768)
Q Consensus 306 ~~~~~~~~~i~~~i~-~~l~~~~~~~~~i~~-V~LvGG~srip~v~~~l~~~fg~~v~~------------~~n~~eava 371 (768)
+++.+.++++...++ +.|++++.. .+++. |+|+||+|++|.+++.+++.||.++.. .-+|..++|
T Consensus 287 ~ii~~~~~ei~~~i~~~~L~~~~~~-~~i~~gIvLtGG~S~ipgi~~~l~~~~~~~vr~~~P~~~~~~~~~~~~p~~~~a 365 (371)
T TIGR01174 287 EIIEARAEEILEIVKQKELRKSGFK-EELNGGIVLTGGGAQLEGIVELAEKVFDNPVRIGLPQNIGGLTEDVNDPEYSTA 365 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCc-ccCCCEEEEeChHHcccCHHHHHHHHhCCCeEEECCCccCCchhhcCCcHHHHH
Confidence 999999999999997 999999876 57776 999999999999999999999854411 126888888
Q ss_pred hHHHHH
Q 004210 372 RGCALQ 377 (768)
Q Consensus 372 ~Gaa~~ 377 (768)
.|.++|
T Consensus 366 ~Gl~~~ 371 (371)
T TIGR01174 366 VGLLLY 371 (371)
T ss_pred HHHHhC
Confidence 888764
No 31
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=99.88 E-value=1.6e-20 Score=207.78 Aligned_cols=195 Identities=14% Similarity=0.156 Sum_probs=148.7
Q ss_pred HHHHHHHHHcCCcceEeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCCchhh
Q 004210 155 RAYLDAATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRD 234 (768)
Q Consensus 155 ~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~ 234 (768)
+.+..|++.|||++..++.||.|+|.++.... +.+..++++||||||||++++. +|.+. ......+||++
T Consensus 169 ~~~~~a~~~aGl~v~~iv~ep~Aaa~a~l~~~-----e~~~gv~vvDiGggtTdisv~~--~G~l~---~~~~i~~GG~~ 238 (420)
T PRK09472 169 KNIVKAVERCGLKVDQLIFAGLASSYAVLTED-----ERELGVCVVDIGGGTMDIAVYT--GGALR---HTKVIPYAGNV 238 (420)
T ss_pred HHHHHHHHHcCCeEeeEEehhhHHHHHhcChh-----hhhcCeEEEEeCCCceEEEEEE--CCEEE---EEeeeechHHH
Confidence 34467999999999999999999999885432 3467799999999999999997 44432 23357899999
Q ss_pred HHHHHHHHHHHHHhhhcccCccCChHHHHHHHHHHHHHhhhccC------CCcccEEEeccccCcceEEEecHHHHHHHH
Q 004210 235 FDEVLSSYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSA------NAEAPLNIECLMNEKDVKGFIRREEFEKLS 308 (768)
Q Consensus 235 ~d~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~------~~~~~i~i~~l~~~~d~~~~itr~~fe~~~ 308 (768)
|++.|+..+. + . +.+||++|..+.. ..+..+.++.+.+.. ...++|.+|.+++
T Consensus 239 it~dIa~~l~--------i--~---------~~~AE~lK~~~g~~~~~~~~~~~~i~v~~~~~~~--~~~i~~~~l~~ii 297 (420)
T PRK09472 239 VTSDIAYAFG--------T--P---------PSDAEAIKVRHGCALGSIVGKDESVEVPSVGGRP--PRSLQRQTLAEVI 297 (420)
T ss_pred HHHHHHHHhC--------c--C---------HHHHHHHHHhcceeccccCCCCceeEecCCCCCC--CeEEcHHHHHHHH
Confidence 9999986552 1 1 2789999976532 123456666543222 2489999999999
Q ss_pred HHHHHHHHHHHHH-------HHHhcCCCCCCcCEEEEecCCCChHHHHHHHHhhcCCCCCC------------cCChhhH
Q 004210 309 SSLLERMRIPCQK-------ALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPGR------------TINASEC 369 (768)
Q Consensus 309 ~~~~~~i~~~i~~-------~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~fg~~v~~------------~~n~~ea 369 (768)
.+.++++...+++ .|..+++....++.|+|+||+|++|.|++.+++.|+.++.. ..+|..+
T Consensus 298 ~~r~~ei~~~i~~~l~~~~~~l~~~g~~~~~~~givLtGG~a~lpgi~e~~~~~f~~~vri~~P~~~~g~~~~~~~P~~a 377 (420)
T PRK09472 298 EPRYTELLNLVNEEILQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFHTQVRIGAPLNITGLTDYAQEPYYS 377 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCEEEEeCchhccccHHHHHHHHhCCCeEEeCCcccCCChhhcCCcHHH
Confidence 9966666666654 55667887778999999999999999999999999854422 2489999
Q ss_pred HHhHHHHHhhH
Q 004210 370 VARGCALQCAM 380 (768)
Q Consensus 370 va~Gaa~~a~~ 380 (768)
+|.|.++++..
T Consensus 378 ta~Gl~~~~~~ 388 (420)
T PRK09472 378 TAVGLLHYGKE 388 (420)
T ss_pred HHHHHHHHhhh
Confidence 99999999763
No 32
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=99.76 E-value=2.3e-16 Score=169.57 Aligned_cols=197 Identities=20% Similarity=0.259 Sum_probs=159.1
Q ss_pred HHHHHHHHHHcCCcceEeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCCchh
Q 004210 154 RRAYLDAATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGR 233 (768)
Q Consensus 154 r~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~ 233 (768)
-+.+.+|++.+||++..++.+|.|+|.+..... ++.-.++++||||||||++++.- |.+ .+.+..++||+
T Consensus 167 ~~Nl~k~v~r~gl~v~~i~l~plAsa~a~L~~d-----EkelGv~lIDiG~GTTdIai~~~--G~l---~~~~~ipvgG~ 236 (418)
T COG0849 167 LENLEKCVERAGLKVDNIVLEPLASALAVLTED-----EKELGVALIDIGGGTTDIAIYKN--GAL---RYTGVIPVGGD 236 (418)
T ss_pred HHHHHHHHHHhCCCeeeEEEehhhhhhhccCcc-----cHhcCeEEEEeCCCcEEEEEEEC--CEE---EEEeeEeeCcc
Confidence 356888999999999999999999998765432 56778999999999999999874 433 33336799999
Q ss_pred hHHHHHHHHHHHHHhhhcccCccCChHHHHHHHHHHHHHhhhccCC------CcccEEEeccccCcceEEEecHHHHHHH
Q 004210 234 DFDEVLSSYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSAN------AEAPLNIECLMNEKDVKGFIRREEFEKL 307 (768)
Q Consensus 234 ~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~------~~~~i~i~~l~~~~d~~~~itr~~fe~~ 307 (768)
+++..|+.-|...| ..||++|..+... .+..+.++...++. ...++|..+.++
T Consensus 237 ~vT~DIa~~l~t~~-------------------~~AE~iK~~~g~a~~~~~~~~~~i~v~~vg~~~--~~~~t~~~ls~I 295 (418)
T COG0849 237 HVTKDIAKGLKTPF-------------------EEAERIKIKYGSALISLADDEETIEVPSVGSDI--PRQVTRSELSEI 295 (418)
T ss_pred HHHHHHHHHhCCCH-------------------HHHHHHHHHcCccccCcCCCcceEecccCCCcc--cchhhHHHHHHH
Confidence 99999997764322 7899999988432 23346666654433 678999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCcCEEEEecCCCChHHHHHHHHhhcCCCC--CC----------cCChhhHHHhHHH
Q 004210 308 SSSLLERMRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNREP--GR----------TINASECVARGCA 375 (768)
Q Consensus 308 ~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~fg~~v--~~----------~~n~~eava~Gaa 375 (768)
+++-+.++..+++..|+++++...-...|+|+||++.+|++.+..++.|+.++ .. ..+|..+.|.|..
T Consensus 296 I~aR~~Ei~~lV~~~l~~~g~~~~~~~gvVlTGG~a~l~Gi~elA~~if~~~vRig~P~~~~Gl~d~~~~p~fs~avGl~ 375 (418)
T COG0849 296 IEARVEEILELVKAELRKSGLPNHLPGGVVLTGGGAQLPGIVELAERIFGRPVRLGVPLNIVGLTDIARNPAFSTAVGLL 375 (418)
T ss_pred HHhhHHHHHHHHHHHHHHcCccccCCCeEEEECchhcCccHHHHHHHhcCCceEeCCCccccCchhhccCchhhhhHHHH
Confidence 99999999999999999999986667899999999999999999999997433 11 2368899999999
Q ss_pred HHhhHh
Q 004210 376 LQCAML 381 (768)
Q Consensus 376 ~~a~~l 381 (768)
++++..
T Consensus 376 ~~~~~~ 381 (418)
T COG0849 376 LYGALM 381 (418)
T ss_pred HHHhhc
Confidence 888754
No 33
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=99.67 E-value=3.3e-16 Score=145.40 Aligned_cols=197 Identities=21% Similarity=0.289 Sum_probs=158.1
Q ss_pred HHHHHHHHHHHhhccCCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCcceEeccchHHHHHHhhhcccCCCCCCCcEEEEE
Q 004210 121 MLLSNLKQITEKNIKIPISNCVIGVPCYLTDVQRRAYLDAATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFV 200 (768)
Q Consensus 121 ~~L~~l~~~a~~~~~~~~~~~VitVP~~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~ 200 (768)
.+.+++++.+++.+|..+....-++|+.-.+...+...+..+.||+.++..++||||||.-.++ ..-.|+
T Consensus 76 eiVrrlkd~lEk~lGi~~tha~taiPPGt~~~~~ri~iNViESAGlevl~vlDEPTAaa~vL~l----------~dg~VV 145 (277)
T COG4820 76 EIVRRLKDTLEKQLGIRFTHAATAIPPGTEQGDPRISINVIESAGLEVLHVLDEPTAAADVLQL----------DDGGVV 145 (277)
T ss_pred HHHHHHHHHHHHhhCeEeeeccccCCCCccCCCceEEEEeecccCceeeeecCCchhHHHHhcc----------CCCcEE
Confidence 4667888999999999999999999999988888888899999999999999999999954433 234789
Q ss_pred EeCCceEEEEEEEeeCCeEEEEEEeCCCCCchhhHHHHHHHHHHHHHhhhcccCccCChHHHHHHHHHHHHHhhhccCCC
Q 004210 201 DIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEVLSSYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANA 280 (768)
Q Consensus 201 D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~ 280 (768)
|+|||||-+|+++-. +|+.+. |..-||.++...|+- .|++++ ++||..|..-....
T Consensus 146 DiGGGTTGIsi~kkG----kViy~A-DEpTGGtHmtLvlAG--------~ygi~~-----------EeAE~~Kr~~k~~~ 201 (277)
T COG4820 146 DIGGGTTGISIVKKG----KVIYSA-DEPTGGTHMTLVLAG--------NYGISL-----------EEAEQYKRGHKKGE 201 (277)
T ss_pred EeCCCcceeEEEEcC----cEEEec-cCCCCceeEEEEEec--------ccCcCH-----------hHHHHhhhccccch
Confidence 999999999999855 466666 899999999877762 345543 67787775432111
Q ss_pred cccEEEeccccCcceEEEecHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCEEEEecCCCChHHHHHHHHhhcCCCC
Q 004210 281 EAPLNIECLMNEKDVKGFIRREEFEKLSSSLLERMRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNREP 360 (768)
Q Consensus 281 ~~~i~i~~l~~~~d~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~fg~~v 360 (768)
+.-..+.|+++++...+.+.++..++ ..+.|+||+|.-|.+.+..++.|+.++
T Consensus 202 ----------------------Eif~~v~PV~eKMAeIv~~hie~~~i-----~dl~lvGGac~~~g~e~~Fe~~l~l~v 254 (277)
T COG4820 202 ----------------------EIFPVVKPVYEKMAEIVARHIEGQGI-----TDLWLVGGACMQPGVEELFEKQLALQV 254 (277)
T ss_pred ----------------------hcccchhHHHHHHHHHHHHHhccCCC-----cceEEecccccCccHHHHHHHHhcccc
Confidence 11234679999999999999988764 459999999999999999999999889
Q ss_pred CCcCChhhHHHhHHHHHh
Q 004210 361 GRTINASECVARGCALQC 378 (768)
Q Consensus 361 ~~~~n~~eava~Gaa~~a 378 (768)
..+..|....-+|.|..+
T Consensus 255 ~~P~~p~y~TPLgIA~sg 272 (277)
T COG4820 255 HLPQHPLYMTPLGIASSG 272 (277)
T ss_pred ccCCCcceechhhhhhcc
Confidence 888888877777776543
No 34
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=99.66 E-value=2.1e-15 Score=165.45 Aligned_cols=301 Identities=15% Similarity=0.155 Sum_probs=188.7
Q ss_pred EEEEEcCccceEEEEEEcCCceEEEeCCCCCccceEEEEeeC----------CceeecHHHHhhhhhCCcchHhHHHHhc
Q 004210 3 VVGFDIGNENCVIAAVKQGGMLDVLLNDESKRETPTVVSFSE----------KQRFLGSAGAASAMMNPKSTISQVKRLL 72 (768)
Q Consensus 3 viGID~Gtt~s~va~~~~~~~~~i~~n~~~~r~~Ps~v~~~~----------~~~~~G~~A~~~~~~~p~~~~~~~k~ll 72 (768)
.|.||+||.++++++...+.|.-++ ||+|+... ....+|.+|......
T Consensus 1 ~iViD~Gs~~~r~G~a~~~~p~~~~---------ps~v~~~~~~~~~~~~~~~~~~~G~~a~~~~~~------------- 58 (371)
T cd00012 1 AVVIDNGSGTIKAGFAGEDAPRVVF---------PSCVGRPKHQSVMVGAGDKDYFVGEEALEKRGL------------- 58 (371)
T ss_pred CEEEECCCCeEEEEeCCCCCCceEe---------eccceeecCcccccccCCCceEEchhhhhCCCC-------------
Confidence 3789999999999998776644444 66665542 234678776432100
Q ss_pred CCCCCChHHHhhhccCCceeeecCCCCEEEEEEecCceeEecHHHHHHHHHHHHHHHHHhhccCCCCeEEEEeCCCCCHH
Q 004210 73 GRKFREDDVQKDLKLFPFETCESHDGGILIMLEYLGETHKFTPVQILGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDV 152 (768)
Q Consensus 73 g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~el~a~~L~~l~~~a~~~~~~~~~~~VitVP~~~~~~ 152 (768)
+. .-..|+ .+|.+ .. -+.+..+++++....-. ....-..+++++|..++..
T Consensus 59 ~~----------~~~~P~-----~~G~i------------~d-~~~~e~~~~~~~~~~l~-~~~~~~~vvl~~p~~~~~~ 109 (371)
T cd00012 59 GL----------ELIYPI-----EHGIV------------VD-WDDMEKIWDHLFFNELK-VNPEEHPVLLTEPPLNPKS 109 (371)
T ss_pred ce----------EEcccc-----cCCEE------------eC-HHHHHHHHHHHHHHhcC-CCCCCCceEEecCCCCCHH
Confidence 00 011121 13332 11 13344555555443211 1223467999999999988
Q ss_pred HHHHHHH-HHHHcCCcceEeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCCc
Q 004210 153 QRRAYLD-AATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLG 231 (768)
Q Consensus 153 qr~~l~~-Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lG 231 (768)
+|+.+.+ +.+..|++.+.+++++.+|+++++. .+.+|+|+|+++|+++.+. +|.+ +.......++|
T Consensus 110 ~r~~~~e~lfe~~~~~~v~~~~~~~~a~~~~g~----------~~~lVVDiG~~~t~i~pv~--~G~~-~~~~~~~~~~G 176 (371)
T cd00012 110 NREKTTEIMFETFNVPALYVAIQAVLSLYASGR----------TTGLVVDSGDGVTHVVPVY--DGYV-LPHAIKRLDLA 176 (371)
T ss_pred HHHHHHHHhhccCCCCEEEEechHHHHHHhcCC----------CeEEEEECCCCeeEEEEEE--CCEE-chhhheecccc
Confidence 8888877 4677999999999999999988753 5789999999999998875 3433 22223357899
Q ss_pred hhhHHHHHHHHHHHHHhhhcccCccCChHHHHHHHHHHHHHhhhccCCC---ccc----------EE-EeccccCcceEE
Q 004210 232 GRDFDEVLSSYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANA---EAP----------LN-IECLMNEKDVKG 297 (768)
Q Consensus 232 G~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~---~~~----------i~-i~~l~~~~d~~~ 297 (768)
|+++|+.|.+++..... ..+.. .-...++.+|+.+..-. ... .. ...+.++ ..+
T Consensus 177 G~~l~~~l~~~l~~~~~---~~~~~-------~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~lpd~--~~i 244 (371)
T cd00012 177 GRDLTRYLKELLRERGY---ELNSS-------DEREIVRDIKEKLCYVALDIEEEQDKSAKETSLLEKTYELPDG--RTI 244 (371)
T ss_pred HHHHHHHHHHHHHhcCC---Cccch-------hHHHHHHHHHHhheeecCCHHHHHHhhhccCCccceeEECCCC--eEE
Confidence 99999999998865421 01111 11245667777653211 000 00 0111122 234
Q ss_pred EecHHHHHHHHHHHHH---------HHHHHHHHHHHhcCC--CCCCcCEEEEecCCCChHHHHHHHHhhcCC--------
Q 004210 298 FIRREEFEKLSSSLLE---------RMRIPCQKALAGSGL--NVEKIHSVELVGSGSRIPAISRMLNSLFNR-------- 358 (768)
Q Consensus 298 ~itr~~fe~~~~~~~~---------~i~~~i~~~l~~~~~--~~~~i~~V~LvGG~srip~v~~~l~~~fg~-------- 358 (768)
.++.+.| .+++.+++ .+.+.|.+++..... ...-++.|+|+||+|++|.+.+.|.+.++.
T Consensus 245 ~~~~er~-~~~E~lF~p~~~~~~~~~i~~~i~~~i~~~~~~~~~~l~~~Ivl~GG~s~~~gl~~rl~~el~~~~~~~~~~ 323 (371)
T cd00012 245 KVGNERF-RAPEILFNPSLIGSEQVGISEAIYSSINKCDIDLRKDLYSNIVLSGGSTLFPGFGERLQKELLKLAPPSKDT 323 (371)
T ss_pred EEChHHh-hChHhcCChhhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCEEEeCCccCCcCHHHHHHHHHHHhCCcccce
Confidence 5665544 33343443 677778888877532 222357899999999999999999988851
Q ss_pred --CCCCcCChhhHHHhHHHHHhhH
Q 004210 359 --EPGRTINASECVARGCALQCAM 380 (768)
Q Consensus 359 --~v~~~~n~~eava~Gaa~~a~~ 380 (768)
.+....+|..++-+||+++|..
T Consensus 324 ~~~~~~~~~~~~~aw~G~si~as~ 347 (371)
T cd00012 324 KVKVIAPPERKYSVWLGGSILASL 347 (371)
T ss_pred EEEEccCCCccccEEeCchhhcCc
Confidence 1234567889999999998864
No 35
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=99.57 E-value=3.5e-14 Score=156.07 Aligned_cols=301 Identities=14% Similarity=0.149 Sum_probs=180.7
Q ss_pred eEEEEEcCccceEEEEEEcCCceEEEeCCCCCccceEEEEeeCCc---------eeecHHHHhhhhhCCcchHhHHHHhc
Q 004210 2 SVVGFDIGNENCVIAAVKQGGMLDVLLNDESKRETPTVVSFSEKQ---------RFLGSAGAASAMMNPKSTISQVKRLL 72 (768)
Q Consensus 2 ~viGID~Gtt~s~va~~~~~~~~~i~~n~~~~r~~Ps~v~~~~~~---------~~~G~~A~~~~~~~p~~~~~~~k~ll 72 (768)
++|+||+||.++++++.....|.-+ +||+|+...+. .++|.+|....
T Consensus 2 ~~iviD~Gs~~~k~G~~~~~~P~~~---------~ps~v~~~~~~~~~~~~~~~~~~G~~a~~~~--------------- 57 (373)
T smart00268 2 PAIVIDNGSGTIKAGFAGEDEPQVV---------FPSIVGRPKDGKGMVGDAKDTFVGDEAQEKR--------------- 57 (373)
T ss_pred CeEEEECCCCcEEEeeCCCCCCcEE---------ccceeeEecccccccCCCcceEecchhhhcC---------------
Confidence 4789999999999999876663333 38888765322 25676662110
Q ss_pred CCCCCChHHHhhhccCCceeeecCCCCEEEEEEecCceeEecHHHHHHHHHHHHHHHHHhhccCCCCeEEEEeCCCCCHH
Q 004210 73 GRKFREDDVQKDLKLFPFETCESHDGGILIMLEYLGETHKFTPVQILGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDV 152 (768)
Q Consensus 73 g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~el~a~~L~~l~~~a~~~~~~~~~~~VitVP~~~~~~ 152 (768)
+.. .-..|+ .+|.+ .--+.+..+++++....- .....-..+++++|...+..
T Consensus 58 ~~~---------~~~~P~-----~~G~i-------------~d~~~~e~i~~~~~~~~l-~~~~~~~~vll~~p~~~~~~ 109 (373)
T smart00268 58 GGL---------ELKYPI-----EHGIV-------------ENWDDMEKIWDYTFFNEL-RVEPEEHPVLLTEPPMNPKS 109 (373)
T ss_pred CCc---------eecCCC-----cCCEE-------------eCHHHHHHHHHHHHhhhc-CCCCccCeeEEecCCCCCHH
Confidence 000 011222 13432 122444556666554311 11123357999999999999
Q ss_pred HHHHHHHHH-HHcCCcceEeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCCc
Q 004210 153 QRRAYLDAA-TIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLG 231 (768)
Q Consensus 153 qr~~l~~Aa-~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lG 231 (768)
+|+.+.+.+ +..|++.+.++.+|.+|+++++ ..+.+|+|+|+++|+++.+. +|.. +........+|
T Consensus 110 ~r~~~~e~lfE~~~~~~v~~~~~~~~a~~~~g----------~~~~lVVDiG~~~t~v~pv~--~G~~-~~~~~~~~~~G 176 (373)
T smart00268 110 NREKILEIMFETFNFPALYIAIQAVLSLYASG----------RTTGLVIDSGDGVTHVVPVV--DGYV-LPHAIKRIDIA 176 (373)
T ss_pred HHHHHHHHhhccCCCCeEEEeccHHHHHHhCC----------CCEEEEEecCCCcceEEEEE--CCEE-chhhheeccCc
Confidence 999998887 5779999999999999998875 35789999999999999986 3433 22222346899
Q ss_pred hhhHHHHHHHHHHHHHhhhcccCccCChHHHHHHHHHHHHHhhhccCC---Ccc------------cEEE-eccccCcce
Q 004210 232 GRDFDEVLSSYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSAN---AEA------------PLNI-ECLMNEKDV 295 (768)
Q Consensus 232 G~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~---~~~------------~i~i-~~l~~~~d~ 295 (768)
|.++|+.|.+++...-. ++. . ..-...++.+|+.+..- ... .... ..+.++..
T Consensus 177 G~~l~~~l~~~l~~~~~-~~~--~-------~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~lpdg~~- 245 (373)
T smart00268 177 GRDLTDYLKELLSERGY-QFN--S-------SAEFEIVREIKEKLCYVAEDFEKEMKKARESSESSKLEKTYELPDGNT- 245 (373)
T ss_pred HHHHHHHHHHHHHhcCC-CCC--c-------HHHHHHHHHhhhheeeecCChHHHHHHhhhcccccccceeEECCCCCE-
Confidence 99999999988865100 111 0 01124455566554211 000 0000 01112322
Q ss_pred EEEecHHHHHHHHHHHH---------HHHHHHHHHHHHhcCCC--CCCcCEEEEecCCCChHHHHHHHHhhcC------C
Q 004210 296 KGFIRREEFEKLSSSLL---------ERMRIPCQKALAGSGLN--VEKIHSVELVGSGSRIPAISRMLNSLFN------R 358 (768)
Q Consensus 296 ~~~itr~~fe~~~~~~~---------~~i~~~i~~~l~~~~~~--~~~i~~V~LvGG~srip~v~~~l~~~fg------~ 358 (768)
+.+..+.| .+++.++ ..+.+.|.+++..+... ..=.+.|+|+||+|++|++.++|.+.+. .
T Consensus 246 -~~~~~er~-~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~~d~r~~l~~nIvltGG~s~i~Gl~~RL~~el~~~~p~~~ 323 (373)
T smart00268 246 -IKVGNERF-RIPEILFKPELIGLEQKGIHELVYESIQKCDIDVRKDLYENIVLSGGSTLIPGFGERLEKELKQLAPKKL 323 (373)
T ss_pred -EEEChHHe-eCchhcCCchhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCeEeecccccCcCHHHHHHHHHHHhCCCCc
Confidence 23333332 2233333 35667777777765321 1113679999999999999999988872 1
Q ss_pred --CCCCcCChhhHHHhHHHHHhhH
Q 004210 359 --EPGRTINASECVARGCALQCAM 380 (768)
Q Consensus 359 --~v~~~~n~~eava~Gaa~~a~~ 380 (768)
.+....++..++=+||+++|..
T Consensus 324 ~v~v~~~~~~~~~~W~G~silas~ 347 (373)
T smart00268 324 KVKVIAPPERKYSVWLGGSILASL 347 (373)
T ss_pred eeEEecCCCCccceEeCcccccCc
Confidence 1233445566777788877754
No 36
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=99.57 E-value=4.4e-13 Score=144.18 Aligned_cols=209 Identities=15% Similarity=0.172 Sum_probs=140.1
Q ss_pred EEEEeCCCCCHHHH-HHHHHHHHHc------C------CcceEeccchHHHHHHhhhcccCC---CCCCCcEEEEEEeCC
Q 004210 141 CVIGVPCYLTDVQR-RAYLDAATIA------G------LKPLRLMHDCTATALGYGIYKTDF---SNVGPTYVVFVDIGH 204 (768)
Q Consensus 141 ~VitVP~~~~~~qr-~~l~~Aa~~A------G------l~~~~li~Ep~Aaal~y~~~~~~~---~~~~~~~vlv~D~Gg 204 (768)
++...|..+-..++ +.+++..... | +..+.++.+|.+|.+.+....... .......++|+|+|+
T Consensus 115 l~tGLPv~~~~~~~~~~l~k~l~~~~~v~~~g~~~~I~i~~V~V~pQ~~ga~~~~~~~~~g~~~~~~~~~~~ilvIDIG~ 194 (344)
T PRK13917 115 VATGMPSEEIGTDKVAKFEKLLNKSRLIEINGIAVTINVKGVKVVAQPMGTLLDLYLDNDGVVADKAFEEGKVSVIDFGS 194 (344)
T ss_pred EEEcCCHHHHHHHHHHHHHHHhcCceEEEECCEEEEEEEEEEEEecccHHHHHHHHhcccCcccchhcccCcEEEEEcCC
Confidence 44599988854443 6676654321 1 234678899999988877643211 012345789999999
Q ss_pred ceEEEEEEEeeCCeEEEEEEeCCCCCchhhHHHHHHHHHHHHHhhhcccCccCChHHHHHHHHHHHHHhhhccCCCcccE
Q 004210 205 CDTQVCVASYENGHMKILSHAFDESLGGRDFDEVLSSYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANAEAPL 284 (768)
Q Consensus 205 gT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~i 284 (768)
||||++++. ++.+ +....+....|..++.+.|.+++..+. ++..+. . .++ +++ |... .+
T Consensus 195 ~TtD~~v~~--~~~~-~~~~s~s~~~G~~~~~~~I~~~i~~~~---~~~~~~--~---~~i----e~~---l~~g---~i 253 (344)
T PRK13917 195 GTTDLDTIQ--NLKR-VEEESFVIPKGTIDVYKRIASHISKKE---EGASIT--P---YML----EKG---LEYG---AC 253 (344)
T ss_pred CcEEEEEEe--CcEE-cccccccccchHHHHHHHHHHHHHhhC---CCCCCC--H---HHH----HHH---HHcC---cE
Confidence 999999986 4444 334445678999999999998886432 222222 1 112 222 2111 11
Q ss_pred EEeccccCcceEEEecHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCEEEEecCCCChHHHHHHHHhhcCCCCCCcC
Q 004210 285 NIECLMNEKDVKGFIRREEFEKLSSSLLERMRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPGRTI 364 (768)
Q Consensus 285 ~i~~l~~~~d~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~fg~~v~~~~ 364 (768)
.+. .+.. +.+ ++++.++++.+++++...|+..+.. ..+++.|+|+||++++ +++.|++.|+. +....
T Consensus 254 ~~~---~~~~--id~-~~~~~~~~~~~~~~i~~~i~~~~~~----~~~~d~IiL~GGGA~l--l~~~lk~~f~~-~~~~~ 320 (344)
T PRK13917 254 KLN---QKTV--IDF-KDEFYKEQDSVIDEVMSGFEIAVGN----INSFDRVIVTGGGANI--FFDSLSHWYSD-VEKAD 320 (344)
T ss_pred EeC---CCce--Eeh-HHHHHHHHHHHHHHHHHHHHHHhcc----cCCCCEEEEECCcHHH--HHHHHHHHcCC-eEEcC
Confidence 111 1111 122 4667789999999999999888854 3478999999999988 88999999984 35678
Q ss_pred ChhhHHHhHHHHHhhHhcC
Q 004210 365 NASECVARGCALQCAMLSP 383 (768)
Q Consensus 365 n~~eava~Gaa~~a~~ls~ 383 (768)
||..|.|+|...+|..+.+
T Consensus 321 ~p~~ANa~G~~~~g~~~~~ 339 (344)
T PRK13917 321 ESQFANVRGYYKYGELLKN 339 (344)
T ss_pred ChHHHHHHHHHHHHHHHhc
Confidence 9999999999999876643
No 37
>PTZ00280 Actin-related protein 3; Provisional
Probab=99.37 E-value=1.2e-10 Score=129.31 Aligned_cols=206 Identities=13% Similarity=0.073 Sum_probs=129.7
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHH-HHcCCcceEeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEeeCC
Q 004210 139 SNCVIGVPCYLTDVQRRAYLDAA-TIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENG 217 (768)
Q Consensus 139 ~~~VitVP~~~~~~qr~~l~~Aa-~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~ 217 (768)
..+++|.|..++..+|+.+.+.+ +..|++-+.+..++.+++++++............+-||+|+|+|+|+++.+. +|
T Consensus 103 ~~vllte~~~~~~~~Re~l~e~lFE~~~~p~i~~~~~~~lslya~~~~~~~~~~~g~~tglVVDiG~~~T~i~PV~--~G 180 (414)
T PTZ00280 103 HYFILTEPPMNPPENREYTAEIMFETFNVKGLYIAVQAVLALRASWTSKKAKELGGTLTGTVIDSGDGVTHVIPVV--DG 180 (414)
T ss_pred CceEEeeCCCCcHHHHHHHHHHHhhccCCCeEEEecCHHHhHhhhcccccccccCCceeEEEEECCCCceEEEEEE--CC
Confidence 46899999999999999887766 5558899999999999998763321100001234669999999999998875 33
Q ss_pred eEEEEEEeCCCCCchhhHHHHHHHHHHHHHhhhcccCccCChHHHHHHHHHHHHHhhhccCCCc----------------
Q 004210 218 HMKILSHAFDESLGGRDFDEVLSSYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANAE---------------- 281 (768)
Q Consensus 218 ~~~vl~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~---------------- 281 (768)
.. +........+||++++..|.++|.... ..+... ..+..++.+|+.++.-..
T Consensus 181 ~~-l~~~~~~~~~GG~~lt~~L~~lL~~~~-----~~~~~~-----~~~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~ 249 (414)
T PTZ00280 181 YV-IGSSIKHIPLAGRDITNFIQQMLRERG-----EPIPAE-----DILLLAQRIKEKYCYVAPDIAKEFEKYDSDPKNH 249 (414)
T ss_pred EE-cccceEEecCcHHHHHHHHHHHHHHcC-----CCCCcH-----HHHHHHHHHHHhcCcccCcHHHHHHHhhcCcccc
Confidence 33 222222457999999999999886431 111110 112446667776642110
Q ss_pred -ccEEEeccccCcceEEEecHHHHH---HHHHHHH------HHHHHHHHHHHHhcCCC--CCCcCEEEEecCCCChHHHH
Q 004210 282 -APLNIECLMNEKDVKGFIRREEFE---KLSSSLL------ERMRIPCQKALAGSGLN--VEKIHSVELVGSGSRIPAIS 349 (768)
Q Consensus 282 -~~i~i~~l~~~~d~~~~itr~~fe---~~~~~~~------~~i~~~i~~~l~~~~~~--~~~i~~V~LvGG~srip~v~ 349 (768)
..+..+...++....+.|..+.|. -++.|-+ ..+.+.|.+++.++... ..=.+.|+|+||+|.+|++.
T Consensus 250 ~~~~~~~d~~~g~~~~i~l~~erf~~~E~LF~P~~~~~~~~~gl~e~i~~sI~~~~~d~r~~L~~nIvL~GG~s~~~Gf~ 329 (414)
T PTZ00280 250 FKKYTAVNSVTKKPYTVDVGYERFLGPEMFFHPEIFSSEWTTPLPEVVDDAIQSCPIDCRRPLYKNIVLSGGSTMFKGFD 329 (414)
T ss_pred cceEECCCCCCCCccEEEechHHhcCcccccChhhcCCccCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCcccCcCHH
Confidence 011111111233446777777664 2333311 14566677777665322 11246799999999999999
Q ss_pred HHHHhhcC
Q 004210 350 RMLNSLFN 357 (768)
Q Consensus 350 ~~l~~~fg 357 (768)
++|++.+.
T Consensus 330 eRL~~El~ 337 (414)
T PTZ00280 330 KRLQRDVR 337 (414)
T ss_pred HHHHHHHH
Confidence 99998875
No 38
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=99.31 E-value=2.3e-11 Score=134.80 Aligned_cols=309 Identities=15% Similarity=0.186 Sum_probs=177.3
Q ss_pred eEEEEEcCccceEEEEEEcCCceEEEeCCCCCccceEEEEeeCCc-----eeecHHHHhhhhhCCcchHhHHHHhcCCCC
Q 004210 2 SVVGFDIGNENCVIAAVKQGGMLDVLLNDESKRETPTVVSFSEKQ-----RFLGSAGAASAMMNPKSTISQVKRLLGRKF 76 (768)
Q Consensus 2 ~viGID~Gtt~s~va~~~~~~~~~i~~n~~~~r~~Ps~v~~~~~~-----~~~G~~A~~~~~~~p~~~~~~~k~llg~~~ 76 (768)
.+|-||+|+.++++++.....|-.+ +||+++..... ..+|..+... .+...
T Consensus 5 ~~vViD~Gs~~~k~G~age~~P~~v---------~ps~~~~~~~~~~~~~~~~g~~~~~~---~~~~~------------ 60 (393)
T PF00022_consen 5 KPVVIDNGSSTIKAGFAGEDLPRVV---------IPSVVGRPRDKNSSNDYYVGDEALSP---RSNLE------------ 60 (393)
T ss_dssp SEEEEEECSSEEEEEETTSSS-SEE---------EESEEEEESSSSSSSSCEETHHHHHT---GTGEE------------
T ss_pred CEEEEECCCceEEEEECCCCCCCCc---------CCCccccccccccceeEEeecccccc---hhhee------------
Confidence 5789999999999999755553333 48887765432 3677764221 00000
Q ss_pred CChHHHhhhccCCceeeecCCCCEEEEEEecCceeEecHHHHHHHHHHHHHHHHHhhccCCCCeEEEEeCCCCCHHHHHH
Q 004210 77 REDDVQKDLKLFPFETCESHDGGILIMLEYLGETHKFTPVQILGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDVQRRA 156 (768)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~el~a~~L~~l~~~a~~~~~~~~~~~VitVP~~~~~~qr~~ 156 (768)
-..|+ .+|. +.--+.+..+++++.... -.....-..++++.|..++...|+.
T Consensus 61 ---------~~~p~-----~~g~-------------i~~~~~~e~i~~~~~~~~-l~~~~~~~~vll~~~~~~~~~~r~~ 112 (393)
T PF00022_consen 61 ---------LRSPI-----ENGV-------------IVDWDALEEIWDYIFSNL-LKVDPSDHPVLLTEPPFNPRSQREK 112 (393)
T ss_dssp ---------EEESE-----ETTE-------------ESSHHHHHHHHHHHHHTT-T-SSGGGSEEEEEESTT--HHHHHH
T ss_pred ---------eeeec-----cccc-------------cccccccccccccccccc-cccccccceeeeeccccCCchhhhh
Confidence 00111 1221 222234455566655432 1112234579999999999999987
Q ss_pred HHHHH-HHcCCcceEeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCCchhhH
Q 004210 157 YLDAA-TIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDF 235 (768)
Q Consensus 157 l~~Aa-~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~ 235 (768)
+.+.+ +..|++-+.++.++.+|+++++. .+-||+|+|++.|.++.+. +|.. +........+||+++
T Consensus 113 l~e~lfE~~~~~~v~~~~~~~~a~~~~g~----------~tglVVD~G~~~t~v~pV~--dG~~-~~~~~~~~~~GG~~l 179 (393)
T PF00022_consen 113 LAEILFEKFGVPSVYFIPSPLLALYASGR----------TTGLVVDIGYSSTSVVPVV--DGYV-LPHSIKRSPIGGDDL 179 (393)
T ss_dssp HHHHHHHTS--SEEEEEEHHHHHHHHTTB----------SSEEEEEESSS-EEEEEEE--TTEE--GGGBEEES-SHHHH
T ss_pred hhhhhhcccccceeeeeeccccccccccc----------ccccccccceeeeeeeeee--eccc-cccccccccccHHHH
Confidence 77665 57799999999999999987764 2569999999999988774 4432 221222457999999
Q ss_pred HHHHHHHHHHH-Hh--hhcccCcc----CChHHHHHHHHHHHHHhhhc---cCCC------------cccEEEeccccCc
Q 004210 236 DEVLSSYFAAQ-FK--QQYDIDVY----TNVKASIRLRASCEKLKKVL---SANA------------EAPLNIECLMNEK 293 (768)
Q Consensus 236 d~~l~~~l~~~-~~--~~~~~~~~----~~~~~~~rL~~~ae~~K~~L---s~~~------------~~~i~i~~l~~~~ 293 (768)
+..|.+.|..+ +. ..+..... ...-....-...++.+|+.+ +.+. ...+.+ .++.
T Consensus 180 t~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~l---Pdg~ 256 (393)
T PF00022_consen 180 TEYLKELLKERNIQINPSYLIKSKSPVEGESYNNSDDEEIVEEIKEECCYVSEDPDEEQEEQASENPEKSYEL---PDGQ 256 (393)
T ss_dssp HHHHHHHHHHT-SS--GCCCCCCHCCC-TCHHSSHHHHHHHHHHHHHHHSGGSSHHHHHHHHHCSTTTEEEE----TTSS
T ss_pred HHHHHHHHHhhccccccccccccccccccccccchhhhccchhccchhhhcccccccccccccccccceeccc---cccc
Confidence 99999888873 11 00000000 00000011123334444443 1111 111212 2333
Q ss_pred ceEEEecHHHHHHHHHHHHH----------------HHHHHHHHHHHhcCCCCCC--cCEEEEecCCCChHHHHHHHHhh
Q 004210 294 DVKGFIRREEFEKLSSSLLE----------------RMRIPCQKALAGSGLNVEK--IHSVELVGSGSRIPAISRMLNSL 355 (768)
Q Consensus 294 d~~~~itr~~fe~~~~~~~~----------------~i~~~i~~~l~~~~~~~~~--i~~V~LvGG~srip~v~~~l~~~ 355 (768)
.+.+..+.| .+.+.+++ .+...|.+++......... ...|+|+||+|++|++.++|.+.
T Consensus 257 --~i~~~~er~-~~~E~LF~p~~~~~~~~~~~~~~~gL~~~I~~si~~~~~d~r~~l~~nIvl~GG~S~i~G~~eRL~~e 333 (393)
T PF00022_consen 257 --TIILGKERF-RIPEILFNPSLIGIDSASEPSEFMGLPELILDSISKCPIDLRKELLSNIVLTGGSSLIPGFKERLQQE 333 (393)
T ss_dssp --EEEESTHHH-HHHHTTTSGGGGTSSSTS---SSSCHHHHHHHHHHTSTTTTHHHHHTTEEEESGGGGSTTHHHHHHHH
T ss_pred --ccccccccc-cccccccccccccccccccccccchhhhhhhhhhhccccccccccccceEEecccccccchHHHHHHH
Confidence 456666555 33444433 4667788888776432211 37899999999999999999877
Q ss_pred cCC--------CCCCcC-ChhhHHHhHHHHHhhHh
Q 004210 356 FNR--------EPGRTI-NASECVARGCALQCAML 381 (768)
Q Consensus 356 fg~--------~v~~~~-n~~eava~Gaa~~a~~l 381 (768)
+.. ++.... ++..++=.||+++|..-
T Consensus 334 L~~~~~~~~~~~v~~~~~~~~~~aW~Ggsilasl~ 368 (393)
T PF00022_consen 334 LRSLLPSSTKVKVIAPPSDRQFAAWIGGSILASLS 368 (393)
T ss_dssp HHHHSGTTSTEEEE--T-TTTSHHHHHHHHHHTSG
T ss_pred hhhhhhccccceeccCchhhhhcccccceeeeccc
Confidence 631 233344 78899999999998754
No 39
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=99.31 E-value=1.8e-10 Score=124.49 Aligned_cols=182 Identities=24% Similarity=0.295 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHHcCCcceEeccchHHHHHHhhhcccCCCC-CCCcEEEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCC
Q 004210 152 VQRRAYLDAATIAGLKPLRLMHDCTATALGYGIYKTDFSN-VGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESL 230 (768)
Q Consensus 152 ~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~-~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~l 230 (768)
..-+.+.++++.|||++..+--++.|.+-.|.......+. .....++++|+|+.++.++++. +|.+. . .....+
T Consensus 136 ~~v~~~~~~~~~aGL~~~~vDv~~~Al~r~~~~~~~~~~~~~~~~~~~lvdiG~~~t~~~i~~--~g~~~--f-~R~i~~ 210 (340)
T PF11104_consen 136 EIVESYVELFEEAGLKPVAVDVEAFALARLFEFLEPQLPDEEDAETVALVDIGASSTTVIIFQ--NGKPI--F-SRSIPI 210 (340)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEEHHHHGGGGGHHHHHTST----T-EEEEEEE-SS-EEEEEEE--TTEEE--E-EEEES-
T ss_pred HHHHHHHHHHHHcCCceEEEeehHHHHHHHHHHHHHhCCcccccceEEEEEecCCeEEEEEEE--CCEEE--E-EEEEee
Confidence 4456778899999999988866777766555443222222 2456899999999999999976 45442 2 224689
Q ss_pred chhhHHHHHHHHHHHHHhhhcccCccCChHHHHHHHHHHHHHhhhccCCCcccEEEeccccCcceEEEecHHHHHHHHHH
Q 004210 231 GGRDFDEVLSSYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANAEAPLNIECLMNEKDVKGFIRREEFEKLSSS 310 (768)
Q Consensus 231 GG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~i~i~~l~~~~d~~~~itr~~fe~~~~~ 310 (768)
||.++++.|++.+.-.+ .+|+..|..-+-.. +...+.+.+
T Consensus 211 G~~~l~~~i~~~~~i~~-------------------~~Ae~~k~~~~l~~---------------------~~~~~~l~~ 250 (340)
T PF11104_consen 211 GGNDLTEAIARELGIDF-------------------EEAEELKRSGGLPE---------------------EYDQDALRP 250 (340)
T ss_dssp SHHHHHHHHHHHTT--H-------------------HHHHHHHHHT---------------------------HHHHHHH
T ss_pred CHHHHHHHHHHhcCCCH-------------------HHHHHHHhcCCCCc---------------------chHHHHHHH
Confidence 99999999997653221 56666665421100 222445556
Q ss_pred HHHHHHHHHHHHHHh--cCCCCCCcCEEEEecCCCChHHHHHHHHhhcCCCC---------CCcC----------ChhhH
Q 004210 311 LLERMRIPCQKALAG--SGLNVEKIHSVELVGSGSRIPAISRMLNSLFNREP---------GRTI----------NASEC 369 (768)
Q Consensus 311 ~~~~i~~~i~~~l~~--~~~~~~~i~~V~LvGG~srip~v~~~l~~~fg~~v---------~~~~----------n~~ea 369 (768)
.++++..-|.+.++- +......|+.|+|+||++++|.+.+.|++.+|.++ ..+. .|..+
T Consensus 251 ~~~~l~~EI~rsl~~y~~~~~~~~i~~I~L~Ggga~l~gL~~~l~~~l~~~v~~~~p~~~~~~~~~~~~~~~~~~~~~~a 330 (340)
T PF11104_consen 251 FLEELAREIRRSLDFYQSQSGGESIERIYLSGGGARLPGLAEYLSEELGIPVEVINPFKNIKLDPKINSEYLQEDAPQFA 330 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHH------SEEEEESGGGGSTTHHHHHHHHHTSEEEE--GGGGSB--TTS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCEEEEECCccchhhHHHHHHHHHCCceEEcChHHhCccCcccChhhhhhhhhHHH
Confidence 666666666666552 22234479999999999999999999999998543 1111 26778
Q ss_pred HHhHHHHHh
Q 004210 370 VARGCALQC 378 (768)
Q Consensus 370 va~Gaa~~a 378 (768)
+|.|.|+.+
T Consensus 331 vA~GLAlR~ 339 (340)
T PF11104_consen 331 VALGLALRG 339 (340)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHhhcC
Confidence 999998864
No 40
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=99.28 E-value=2e-10 Score=122.96 Aligned_cols=208 Identities=15% Similarity=0.180 Sum_probs=130.0
Q ss_pred CCCeEEEEeCCCCCHHHHHHHHHHHHHc---------CCcceEeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceE
Q 004210 137 PISNCVIGVPCYLTDVQRRAYLDAATIA---------GLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDT 207 (768)
Q Consensus 137 ~~~~~VitVP~~~~~~qr~~l~~Aa~~A---------Gl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~ 207 (768)
.+..+|+..|..+...+|+.+++...-. -+..+.++.+|.+|.+.|....... ......++|+|+|++|+
T Consensus 101 ~~~~lv~GLP~~~~~~~k~~l~~~l~g~~~~~~~~~i~I~~V~V~PQ~~Ga~~~~~~~~~~~-~~~~~~~lVIDIG~~Tt 179 (320)
T TIGR03739 101 EIDQLVVGLPVATLTTYKSALEKAVTGEHDIGAGKAVTVRKVLAVPQPQGALVHFVAQHGKL-LTGKEQSLIIDPGYFTF 179 (320)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHhccceecCCceEEEEEEEEEeCCChHHHHHHHhcCCCc-ccCcCcEEEEecCCCee
Confidence 3567999999999998999998886532 2345778999999988876643211 12456789999999999
Q ss_pred EEEEEEeeCCeEEEEEEeCCCCCchhhHHHHHHHHHHHHHhhhcccCccCChHHHHHHHHHHHHHhhhccCCCcccEEEe
Q 004210 208 QVCVASYENGHMKILSHAFDESLGGRDFDEVLSSYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANAEAPLNIE 287 (768)
Q Consensus 208 dvsv~~~~~~~~~vl~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~i~i~ 287 (768)
|+.++. ++.+ +....+....|..++-+.|.+.+.+++ +.+...+.. ..+.+ |..... +.+
T Consensus 180 D~~~~~--~~~~-~~~~s~s~~~G~~~~~~~I~~~i~~~~----g~~~~~~~~-------~i~~~---l~~g~~--~~~- 239 (320)
T TIGR03739 180 DWLVAR--GMRL-VQKRSGSVNGGMSDIYRLLAAEISKDI----GTPAYRDID-------RIDLA---LRTGKQ--PRI- 239 (320)
T ss_pred eeehcc--CCEE-cccccCCchhHHHHHHHHHHHHHHhhc----CCCCccCHH-------HHHHH---HHhCCc--eee-
Confidence 998764 4454 445555778999988888888887665 332111111 11111 111000 000
Q ss_pred ccccCcceEEEecHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCEEEEecCCCChHHHHHHHHhhcCC-CCCCcCCh
Q 004210 288 CLMNEKDVKGFIRREEFEKLSSSLLERMRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNR-EPGRTINA 366 (768)
Q Consensus 288 ~l~~~~d~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~fg~-~v~~~~n~ 366 (768)
+ +.. +.|+ +.-+.....++++..-|.+.+ + ...+++.|+|+||++. .+++.|++.|+. .+....||
T Consensus 240 --~-gk~--~di~--~~~~~~~~~~~~~v~~i~~~~---~-~~~~~~~Iil~GGGa~--ll~~~l~~~f~~~~i~~~~dp 306 (320)
T TIGR03739 240 --Y-QKP--VDIK--RCLELAETVAQQAVSTMMTWI---G-APESIQNIVLVGGGAF--LFKKAVKAAFPKHRIVEVDEP 306 (320)
T ss_pred --c-cee--cCch--HHHHHHHHHHHHHHHHHHHhc---c-cCCcccEEEEeCCcHH--HHHHHHHHHCCCCeeEecCCc
Confidence 1 111 1122 111223333333333333333 1 1236899999999987 557889999974 44567899
Q ss_pred hhHHHhHHHHHh
Q 004210 367 SECVARGCALQC 378 (768)
Q Consensus 367 ~eava~Gaa~~a 378 (768)
..|.|+|-..+|
T Consensus 307 ~~ANarG~~~~g 318 (320)
T TIGR03739 307 MFANVRGFQIAG 318 (320)
T ss_pred HHHHHHHHHHhh
Confidence 999999987765
No 41
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=99.27 E-value=5.7e-10 Score=121.48 Aligned_cols=183 Identities=15% Similarity=0.161 Sum_probs=121.9
Q ss_pred HHHHHHHHHHHHHcCCcceEeccchHHHHHHhhhcccCCC-CCCCc-EEEEEEeCCceEEEEEEEeeCCeEEEEEEeCCC
Q 004210 151 DVQRRAYLDAATIAGLKPLRLMHDCTATALGYGIYKTDFS-NVGPT-YVVFVDIGHCDTQVCVASYENGHMKILSHAFDE 228 (768)
Q Consensus 151 ~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~-~~~~~-~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~ 228 (768)
....+.+.++++.||+++..+..+|.|.+-.+.+....+. ..... .++++|+|+++|+++++. +|.+ . .....
T Consensus 142 ~~~v~~~~~~~~~aGl~~~~id~~~~Al~~~~~~~~~~~~~~~~~~~~~~lvdiG~~~t~l~i~~--~g~~--~-~~r~i 216 (348)
T TIGR01175 142 KEVVDSRLHALKLAGLEPKVVDVESFALLRAWRLLGEQLASRTYRLTDAALVDIGATSSTLNLLH--PGRM--L-FTREV 216 (348)
T ss_pred HHHHHHHHHHHHHcCCceEEEecHHHHHHHHHHHHHhhCccccccCceEEEEEECCCcEEEEEEE--CCeE--E-EEEEe
Confidence 4567788899999999999999999998766631110111 12233 499999999999999986 4433 2 22357
Q ss_pred CCchhhHHHHHHHHHHHHHhhhcccCccCChHHHHHHHHHHHHHhhhccCCCcccEEEeccccCcceEEEecHHHHHHHH
Q 004210 229 SLGGRDFDEVLSSYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANAEAPLNIECLMNEKDVKGFIRREEFEKLS 308 (768)
Q Consensus 229 ~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~i~i~~l~~~~d~~~~itr~~fe~~~ 308 (768)
.+||.+|++.|.+.+ +++. ..||+.|........ . -.+++
T Consensus 217 ~~G~~~i~~~i~~~~--------~~~~-----------~~Ae~~k~~~~~~~~-------------~--------~~~~~ 256 (348)
T TIGR01175 217 PFGTRQLTSELSRAY--------GLNP-----------EEAGEAKQQGGLPLL-------------Y--------DPEVL 256 (348)
T ss_pred echHHHHHHHHHHHc--------CCCH-----------HHHHHHHhcCCCCCc-------------h--------hHHHH
Confidence 899999999887433 2221 678888765321110 0 02345
Q ss_pred HHHHHHHHHHHHHHHHhc--CCCCCCcCEEEEecCCCChHHHHHHHHhhcCCCCCC-------------------cCChh
Q 004210 309 SSLLERMRIPCQKALAGS--GLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPGR-------------------TINAS 367 (768)
Q Consensus 309 ~~~~~~i~~~i~~~l~~~--~~~~~~i~~V~LvGG~srip~v~~~l~~~fg~~v~~-------------------~~n~~ 367 (768)
++.++++..-|.+.|+-. ......++.|+|+||+++++.+.+.+++.||.++.. ..+|.
T Consensus 257 ~~~~~~l~~eI~~~l~~~~~~~~~~~i~~I~LtGgga~~~gl~~~l~~~l~~~v~~~~P~~~~~~~~~~~~~~~~~~~~~ 336 (348)
T TIGR01175 257 RRFKGELVDEIRRSLQFFTAQSGTNSLDGLVLAGGGATLSGLDAAIYQRLGLPTEVANPFALMALDAKVDAGRLAVDAPA 336 (348)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCCcccceEEEECccccchhHHHHHHHHHCCCeEecChHHhcccCccCCHHHHHhhhHH
Confidence 566666666666666432 222335899999999999999999999999854311 12456
Q ss_pred hHHHhHHHHHh
Q 004210 368 ECVARGCALQC 378 (768)
Q Consensus 368 eava~Gaa~~a 378 (768)
.++|.|+|+++
T Consensus 337 ~~~a~Glalr~ 347 (348)
T TIGR01175 337 LMTALGLALRG 347 (348)
T ss_pred HHHHhhHhhcC
Confidence 67788887654
No 42
>PTZ00452 actin; Provisional
Probab=99.19 E-value=5.9e-10 Score=121.70 Aligned_cols=218 Identities=16% Similarity=0.144 Sum_probs=134.3
Q ss_pred CCCeEEEEeCCCCCHHHHHHHHHHH-HHcCCcceEeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEee
Q 004210 137 PISNCVIGVPCYLTDVQRRAYLDAA-TIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYE 215 (768)
Q Consensus 137 ~~~~~VitVP~~~~~~qr~~l~~Aa-~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~ 215 (768)
.-..+++|-|...+..+|+.+.+.+ +..+.+.+.+.+.+.+++++++. .+-||+|+|.|.|.++-+.
T Consensus 99 ~~~pvlitE~~~~~~~~Re~l~eilFE~~~vp~~~~~~~~~lslya~g~----------~tglVVDiG~~~t~v~PV~-- 166 (375)
T PTZ00452 99 EDQPVFMTDAPMNSKFNRERMTQIMFETFNTPCLYISNEAVLSLYTSGK----------TIGLVVDSGEGVTHCVPVF-- 166 (375)
T ss_pred ccCceeeecCCCCCHHHHHHHHHHHhhccCCceEEEechHHHHHHHCCC----------ceeeeecCCCCcceEEEEE--
Confidence 3467899999999999998887665 56788888899999988876542 4679999999999987764
Q ss_pred CCeEEEEEEeCCCCCchhhHHHHHHHHHHHHHhhhcccCccCChHHHHHHHHHHHHHhhhccCCCc------------cc
Q 004210 216 NGHMKILSHAFDESLGGRDFDEVLSSYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANAE------------AP 283 (768)
Q Consensus 216 ~~~~~vl~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~------------~~ 283 (768)
+|.. +........+||.+++..|.+.|... +..... ... ...++.+|+.++.-.. ..
T Consensus 167 dG~~-l~~~~~r~~~gG~~lt~~L~~lL~~~-----~~~~~~-~~~----~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~ 235 (375)
T PTZ00452 167 EGHQ-IPQAITKINLAGRLCTDYLTQILQEL-----GYSLTE-PHQ----RIIVKNIKERLCYTALDPQDEKRIYKESNS 235 (375)
T ss_pred CCEE-eccceEEeeccchHHHHHHHHHHHhc-----CCCCCC-HHH----HHHHHHHHHHhccccCcHHHHHHHhhccCC
Confidence 4433 22222346799999999998887532 111111 000 1234455555432110 00
Q ss_pred EE-EeccccCcceEEEecHHHH---HHHHHHHH-----HHHHHHHHHHHHhcCCC--CCCcCEEEEecCCCChHHHHHHH
Q 004210 284 LN-IECLMNEKDVKGFIRREEF---EKLSSSLL-----ERMRIPCQKALAGSGLN--VEKIHSVELVGSGSRIPAISRML 352 (768)
Q Consensus 284 i~-i~~l~~~~d~~~~itr~~f---e~~~~~~~-----~~i~~~i~~~l~~~~~~--~~~i~~V~LvGG~srip~v~~~l 352 (768)
.. .-.|-++. .+.+..+.| |-+++|-+ ..+.++|.+++..+... ..-...|+|+||+|.+|.+.++|
T Consensus 236 ~~~~y~LPDg~--~i~l~~er~~~~E~LF~P~~~g~~~~gi~~~i~~si~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL 313 (375)
T PTZ00452 236 QDSPYKLPDGN--ILTIKSQKFRCSEILFQPKLIGLEVAGIHHLAYSSIKKCDLDLRQELCRNIVLSGGTTLFPGIANRL 313 (375)
T ss_pred cCceEECCCCC--EEEeehHHhcCcccccChhhcCCCCCChhHHHHHHHHhCCHhHHHHhhccEEEecccccccCHHHHH
Confidence 00 01122332 345666665 12222321 13556666666665321 22246899999999999999999
Q ss_pred HhhcC----C--C--CCCcCChhhHHHhHHHHHhh
Q 004210 353 NSLFN----R--E--PGRTINASECVARGCALQCA 379 (768)
Q Consensus 353 ~~~fg----~--~--v~~~~n~~eava~Gaa~~a~ 379 (768)
...+. . + +..+.+...++=+|++++|.
T Consensus 314 ~~El~~~~p~~~~v~v~~~~~r~~~aW~GgSilas 348 (375)
T PTZ00452 314 SNELTNLVPSQLKIQVAAPPDRRFSAWIGGSIQCT 348 (375)
T ss_pred HHHHHHhCCCCceeEEecCCCcceeEEECchhhcC
Confidence 87763 1 1 22334555667788888875
No 43
>PTZ00281 actin; Provisional
Probab=99.15 E-value=6.6e-10 Score=121.65 Aligned_cols=218 Identities=15% Similarity=0.147 Sum_probs=136.1
Q ss_pred CCeEEEEeCCCCCHHHHHHHHH-HHHHcCCcceEeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEeeC
Q 004210 138 ISNCVIGVPCYLTDVQRRAYLD-AATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYEN 216 (768)
Q Consensus 138 ~~~~VitVP~~~~~~qr~~l~~-Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~ 216 (768)
-..+++|-|..+...+|+.+.+ ..+..+++-+.+...+.+++++++. .+-||+|+|.+.|.++-+. +
T Consensus 101 ~~pvllte~~~~~~~~re~l~e~lFE~~~vp~~~~~~~~~ls~ya~g~----------~tglVVDiG~~~t~v~PV~--d 168 (376)
T PTZ00281 101 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR----------TTGIVMDSGDGVSHTVPIY--E 168 (376)
T ss_pred cCeEEEecCCCCcHHHHHHHHHHHhcccCCceeEeeccHHHHHHhcCC----------ceEEEEECCCceEEEEEEE--e
Confidence 4578899999999999998887 4477788888999999999876542 4679999999999987654 2
Q ss_pred CeEEEEEEeCCCCCchhhHHHHHHHHHHHHHhhhcccCccCChHHHHHHHHHHHHHhhhccCCC---c---------ccE
Q 004210 217 GHMKILSHAFDESLGGRDFDEVLSSYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANA---E---------APL 284 (768)
Q Consensus 217 ~~~~vl~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~---~---------~~i 284 (768)
|.. +........+||.++++.|.+.|... +..... . .- ...++.+|+.++.-. . ...
T Consensus 169 G~~-~~~~~~~~~~GG~~lt~~L~~lL~~~-----~~~~~~-~-~~---~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~ 237 (376)
T PTZ00281 169 GYA-LPHAILRLDLAGRDLTDYMMKILTER-----GYSFTT-T-AE---REIVRDIKEKLAYVALDFEAEMQTAASSSAL 237 (376)
T ss_pred ccc-chhheeeccCcHHHHHHHHHHHHHhc-----CCCCCc-H-HH---HHHHHHHHHhcEEecCCchHHHHhhhcCccc
Confidence 322 22233356799999999999887542 111111 1 00 134566666653111 0 001
Q ss_pred EEe-ccccCcceEEEecHHHH---HHHHHHHH-----HHHHHHHHHHHHhcCCC--CCCcCEEEEecCCCChHHHHHHHH
Q 004210 285 NIE-CLMNEKDVKGFIRREEF---EKLSSSLL-----ERMRIPCQKALAGSGLN--VEKIHSVELVGSGSRIPAISRMLN 353 (768)
Q Consensus 285 ~i~-~l~~~~d~~~~itr~~f---e~~~~~~~-----~~i~~~i~~~l~~~~~~--~~~i~~V~LvGG~srip~v~~~l~ 353 (768)
... .+-++. .+.|..+.| |-+++|-+ ..+.+.|.+++..+... ..-.+.|+|+||+|.+|.+.++|.
T Consensus 238 ~~~y~LPdg~--~i~i~~er~~~~E~LF~P~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~ 315 (376)
T PTZ00281 238 EKSYELPDGQ--VITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMN 315 (376)
T ss_pred ceeEECCCCC--EEEeeHHHeeCcccccChhhcCCCCCCHHHHHHHHHHhCChhHHHHHHhhccccCccccCcCHHHHHH
Confidence 111 122222 345555544 22333321 13556666666665322 112368999999999999999988
Q ss_pred hhcC----C----CCCCcCChhhHHHhHHHHHhhH
Q 004210 354 SLFN----R----EPGRTINASECVARGCALQCAM 380 (768)
Q Consensus 354 ~~fg----~----~v~~~~n~~eava~Gaa~~a~~ 380 (768)
..+. . ++..+.++..++=+||+++|..
T Consensus 316 ~El~~~~p~~~~v~v~~~~~r~~~aW~Ggsilasl 350 (376)
T PTZ00281 316 KELTALAPSTMKIKIIAPPERKYSVWIGGSILASL 350 (376)
T ss_pred HHHHHhCCCCcceEEecCCCCceeEEECcccccCc
Confidence 7763 1 1233446677788888888763
No 44
>PTZ00004 actin-2; Provisional
Probab=99.13 E-value=1.5e-09 Score=119.09 Aligned_cols=217 Identities=11% Similarity=0.084 Sum_probs=135.1
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHH-HHcCCcceEeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEeeC
Q 004210 138 ISNCVIGVPCYLTDVQRRAYLDAA-TIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYEN 216 (768)
Q Consensus 138 ~~~~VitVP~~~~~~qr~~l~~Aa-~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~ 216 (768)
...+++|-|..++..+|+.+.+.+ +..|++.+.+..++.+++++++. .+-+|+|+|++.|+++.+. +
T Consensus 101 ~~pvllte~~~~~~~~r~~~~e~lFE~~~~~~~~~~~~~~ls~ya~g~----------~tglVVDiG~~~t~v~pV~--d 168 (378)
T PTZ00004 101 EHPVLLTEAPLNPKANREKMTQIMFETHNVPAMYVAIQAVLSLYASGR----------TTGIVLDSGDGVSHTVPIY--E 168 (378)
T ss_pred cCcceeecCCCCcHHHHHHHHHHHHhhcCCceEEeeccHHHHHHhcCC----------ceEEEEECCCCcEEEEEEE--C
Confidence 456889999999999998776655 67899999999999999877642 4679999999999987764 3
Q ss_pred CeEEEEEEeCCCCCchhhHHHHHHHHHHHHHhhhcccCccCChHHHHHHHHHHHHHhhhccCCC---c----------cc
Q 004210 217 GHMKILSHAFDESLGGRDFDEVLSSYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANA---E----------AP 283 (768)
Q Consensus 217 ~~~~vl~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~---~----------~~ 283 (768)
|.. +.......++||+++++.|.+.+... +..+.. .. -...++.+|+.+..-. . ..
T Consensus 169 G~~-l~~~~~~~~~GG~~lt~~L~~lL~~~-----~~~~~~--~~---~~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~ 237 (378)
T PTZ00004 169 GYS-LPHAIHRLDVAGRDLTEYMMKILHER-----GTTFTT--TA---EKEIVRDIKEKLCYIALDFDEEMGNSAGSSDK 237 (378)
T ss_pred CEE-eecceeeecccHHHHHHHHHHHHHhc-----CCCCCc--HH---HHHHHHHHhhcceeecCCHHHHHhhhhcCccc
Confidence 433 22333356799999999999987542 111111 11 1133455565542110 0 00
Q ss_pred EEEe-ccccCcceEEEecHHHHH---HHHHHH------HHHHHHHHHHHHHhcCCC--CCCcCEEEEecCCCChHHHHHH
Q 004210 284 LNIE-CLMNEKDVKGFIRREEFE---KLSSSL------LERMRIPCQKALAGSGLN--VEKIHSVELVGSGSRIPAISRM 351 (768)
Q Consensus 284 i~i~-~l~~~~d~~~~itr~~fe---~~~~~~------~~~i~~~i~~~l~~~~~~--~~~i~~V~LvGG~srip~v~~~ 351 (768)
.... .+.++. .+.+..+.|. -++.|- ...+.+.|.+++.++... ..-...|+|+||+|.+|.+.++
T Consensus 238 ~~~~y~lPdg~--~i~l~~er~~~~E~LF~P~~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~R 315 (378)
T PTZ00004 238 YEESYELPDGT--IITVGSERFRCPEALFQPSLIGKEEPPGIHELTFQSINKCDIDIRKDLYGNIVLSGGTTMYRGLPER 315 (378)
T ss_pred cceEEECCCCC--EEEEcHHHeeCcccccChhhcCccccCChHHHHHHHHHhCChhHHHHHHhhEEeccchhcCcCHHHH
Confidence 0111 122332 2455555542 233332 224556667777665322 1123689999999999999999
Q ss_pred HHhhcC----C----CCCCcCChhhHHHhHHHHHhh
Q 004210 352 LNSLFN----R----EPGRTINASECVARGCALQCA 379 (768)
Q Consensus 352 l~~~fg----~----~v~~~~n~~eava~Gaa~~a~ 379 (768)
|...+. . .+..+.++..++=+||+++|.
T Consensus 316 L~~EL~~~~p~~~~~~v~~~~~~~~~aW~Ggsilas 351 (378)
T PTZ00004 316 LTKELTTLAPSTMKIKVVAPPERKYSVWIGGSILSS 351 (378)
T ss_pred HHHHHHHhCCCCccEEEecCCCCceeEEECcccccC
Confidence 987773 1 123344566677778887765
No 45
>PTZ00466 actin-like protein; Provisional
Probab=99.07 E-value=4.3e-09 Score=115.06 Aligned_cols=217 Identities=10% Similarity=0.068 Sum_probs=134.1
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHH-HHcCCcceEeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEeeC
Q 004210 138 ISNCVIGVPCYLTDVQRRAYLDAA-TIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYEN 216 (768)
Q Consensus 138 ~~~~VitVP~~~~~~qr~~l~~Aa-~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~ 216 (768)
-..+++|-|+.++..+|+.+.+.+ +..|++.+.+.+.+.+++++++. .+-+|+|+|.+.|.++-+. +
T Consensus 106 ~~pvllte~~~~~~~~re~~~e~lFE~~~~p~~~~~~~~~lsl~a~g~----------~tglVVD~G~~~t~v~PV~--~ 173 (380)
T PTZ00466 106 EHPVLLTEAPLNPQKNKEKIAEVFFETFNVPALFISIQAILSLYSCGK----------TNGTVLDCGDGVCHCVSIY--E 173 (380)
T ss_pred cCeEEEecCccccHHHHHHHHHHHhccCCCCeEEEecchHHHHHhcCC----------ceEEEEeCCCCceEEEEEE--C
Confidence 456889999999999999876654 66788888999999998877642 4679999999999987764 3
Q ss_pred CeEEEEEEeCCCCCchhhHHHHHHHHHHHHHhhhcccCccCChHHHHHHHHHHHHHhhhccCCC-----------cccEE
Q 004210 217 GHMKILSHAFDESLGGRDFDEVLSSYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANA-----------EAPLN 285 (768)
Q Consensus 217 ~~~~vl~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~-----------~~~i~ 285 (768)
|.. +........+||++++..|.+.+... .+..+. . .-+..++.+|+.++.-. .....
T Consensus 174 G~~-~~~~~~~~~~GG~~lt~~L~~lL~~~---~~~~~~----~---~~~~~v~~iKe~~c~v~~d~~~e~~~~~~~~~~ 242 (380)
T PTZ00466 174 GYS-ITNTITRTDVAGRDITTYLGYLLRKN---GHLFNT----S---AEMEVVKNMKENCCYVSFNMNKEKNSSEKALTT 242 (380)
T ss_pred CEE-eecceeEecCchhHHHHHHHHHHHhc---CCCCCc----H---HHHHHHHHHHHhCeEecCChHHHHhhccccccc
Confidence 433 22233346899999999999887532 111111 0 11234555666543110 00000
Q ss_pred Ee-ccccCcceEEEecHHHH---HHHHHHHH-----HHHHHHHHHHHHhcCCC--CCCcCEEEEecCCCChHHHHHHHHh
Q 004210 286 IE-CLMNEKDVKGFIRREEF---EKLSSSLL-----ERMRIPCQKALAGSGLN--VEKIHSVELVGSGSRIPAISRMLNS 354 (768)
Q Consensus 286 i~-~l~~~~d~~~~itr~~f---e~~~~~~~-----~~i~~~i~~~l~~~~~~--~~~i~~V~LvGG~srip~v~~~l~~ 354 (768)
.. .|.++. .+.+..+.| |-++.|-+ ..+.+.|-+++.++... ..-...|+|+||+|.+|.+.++|..
T Consensus 243 ~~y~LPdg~--~i~l~~er~~~~E~LF~P~~~g~~~~gl~~~i~~sI~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~ 320 (380)
T PTZ00466 243 LPYILPDGS--QILIGSERYRAPEVLFNPSILGLEYLGLSELIVTSITRADMDLRRTLYSHIVLSGGTTMFHGFGDRLLN 320 (380)
T ss_pred eeEECCCCc--EEEEchHHhcCcccccCccccCCCCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCccccCCHHHHHHH
Confidence 11 122232 345666655 22233311 13456666666665322 1124789999999999999999988
Q ss_pred hcC----C----CCCCcCChhhHHHhHHHHHhh
Q 004210 355 LFN----R----EPGRTINASECVARGCALQCA 379 (768)
Q Consensus 355 ~fg----~----~v~~~~n~~eava~Gaa~~a~ 379 (768)
.+. . .+....++..++=+||+++|.
T Consensus 321 EL~~l~p~~~~v~v~~~~~r~~~aW~GgSilas 353 (380)
T PTZ00466 321 EIRKFAPKDITIRISAPPERKFSTFIGGSILAS 353 (380)
T ss_pred HHHHhCCCCceEEEecCCCCceeEEECchhhcC
Confidence 773 1 123334555666778888775
No 46
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=99.02 E-value=1.1e-08 Score=105.55 Aligned_cols=170 Identities=16% Similarity=0.200 Sum_probs=110.0
Q ss_pred EeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCCchhhHHHHHHHHHHHHHhh
Q 004210 170 RLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEVLSSYFAAQFKQ 249 (768)
Q Consensus 170 ~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~d~~l~~~l~~~~~~ 249 (768)
..++|.+|.+.+..+.. |..-.|+|+||..+-+..++ +|.+.-......+..|+..|.+.+++.+-
T Consensus 73 ~~~~ei~~~~~g~~~~~-------~~~~~vidiGgqd~k~i~~~--~g~~~~~~~n~~ca~Gtg~f~e~~a~~l~----- 138 (248)
T TIGR00241 73 KIVTEISCHGKGANYLA-------PEARGVIDIGGQDSKVIKID--DGKVDDFTMNDKCAAGTGRFLEVTARRLG----- 138 (248)
T ss_pred CceEEhhHHHHHHHHHC-------CCCCEEEEecCCeeEEEEEC--CCcEeeeeecCcccccccHHHHHHHHHcC-----
Confidence 46789888876654432 22335999999988888876 56554444566788899999988886652
Q ss_pred hcccCccCChHHHHHHHHHHHHHhhhc----cCCCcccEEEec-cccCcceEEEecHHHHHHHHHHHHHHHHHHHHHHHH
Q 004210 250 QYDIDVYTNVKASIRLRASCEKLKKVL----SANAEAPLNIEC-LMNEKDVKGFIRREEFEKLSSSLLERMRIPCQKALA 324 (768)
Q Consensus 250 ~~~~~~~~~~~~~~rL~~~ae~~K~~L----s~~~~~~i~i~~-l~~~~d~~~~itr~~fe~~~~~~~~~i~~~i~~~l~ 324 (768)
+++ ++++.++..- .-+....+..+. +... +....++ ++++..+++.+...+.+.+.
T Consensus 139 ---~~~-----------~e~~~~~~~~~~~~~~~~~c~vf~~s~vi~~--l~~g~~~---~di~~~~~~~va~~i~~~~~ 199 (248)
T TIGR00241 139 ---VSV-----------EELGSLAEKADRKAKISSMCTVFAESELISL--LAAGVKK---EDILAGVYESIAERVAEMLQ 199 (248)
T ss_pred ---CCH-----------HHHHHHHhcCCCCCCcCCEeEEEechhHHHH--HHCCCCH---HHHHHHHHHHHHHHHHHHHh
Confidence 322 3333333221 111111122111 0000 0001223 45666677777766666665
Q ss_pred hcCCCCCCcC-EEEEecCCCChHHHHHHHHhhcCCCCCCcCChhhHHHhHHHHH
Q 004210 325 GSGLNVEKIH-SVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQ 377 (768)
Q Consensus 325 ~~~~~~~~i~-~V~LvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~Gaa~~ 377 (768)
..+ ++ .|+|+||.++.|.+.+.+.+.++.++..+.++..+.|+|||++
T Consensus 200 ~~~-----~~~~Vvl~GGva~n~~l~~~l~~~lg~~v~~~~~~~~~~AlGaAl~ 248 (248)
T TIGR00241 200 RLK-----IEAPIVFTGGVSKNKGLVKALEKKLGMKVITPPEPQIVGAVGAALL 248 (248)
T ss_pred hcC-----CCCCEEEECccccCHHHHHHHHHHhCCcEEcCCCccHHHHHHHHhC
Confidence 443 44 6999999999999999999999999999999999999999973
No 47
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.02 E-value=1.8e-07 Score=95.17 Aligned_cols=159 Identities=18% Similarity=0.265 Sum_probs=109.0
Q ss_pred HHHHHHHHHHcCCcceEeccchHHHHHHhhhcccC-CCCCCCcEEEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCCch
Q 004210 154 RRAYLDAATIAGLKPLRLMHDCTATALGYGIYKTD-FSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGG 232 (768)
Q Consensus 154 r~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~-~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG 232 (768)
-....+|++.|||.+..+--|..|.--+|..--.. .+......++|+|+|+..+.++++.-. +.+.+. +..+||
T Consensus 151 v~~ri~a~~~AGl~~~vlDV~~fAl~ra~~~~~~~~~~~~a~~~vav~~Igat~s~l~vi~~g----k~ly~r-~~~~g~ 225 (354)
T COG4972 151 VESRIDAFELAGLEPKVLDVESFALLRAYRLLASQFGPEEAAMKVAVFDIGATSSELLVIQDG----KILYTR-EVPVGT 225 (354)
T ss_pred hHHHHHHHHHcCCCceEEehHHHHHHHHHHHHHHHhCCchhhhhheeeeecccceEEEEEECC----eeeeEe-eccCcH
Confidence 35567899999999988888888887777632221 122333447999999999999998754 344444 789999
Q ss_pred hhHHHHHHHHHHHHHhhhcccCccCChHHHHHHHHHHHHHhhhccCCCcccEEEeccccCcceEEEecHHHHHHHHHHHH
Q 004210 233 RDFDEVLSSYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANAEAPLNIECLMNEKDVKGFIRREEFEKLSSSLL 312 (768)
Q Consensus 233 ~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~i~i~~l~~~~d~~~~itr~~fe~~~~~~~ 312 (768)
+.+++.+.+.+ +.+. ..++.+|....-.. ++ -.++..+++
T Consensus 226 ~Qlt~~i~r~~--------~L~~-----------~~a~~~k~~~~~P~-------------~y--------~~~vl~~f~ 265 (354)
T COG4972 226 DQLTQEIQRAY--------SLTE-----------EKAEEIKRGGTLPT-------------DY--------GSEVLRPFL 265 (354)
T ss_pred HHHHHHHHHHh--------CCCh-----------hHhHHHHhCCCCCC-------------ch--------hHHHHHHHH
Confidence 99999887544 2322 45666665543222 11 133445555
Q ss_pred HHHHHHHHHHHH----hcCCCCCCcCEEEEecCCCChHHHHHHHHhhcCCC
Q 004210 313 ERMRIPCQKALA----GSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNRE 359 (768)
Q Consensus 313 ~~i~~~i~~~l~----~~~~~~~~i~~V~LvGG~srip~v~~~l~~~fg~~ 359 (768)
+.+..-|.+.|+ .++ ..+|++|+|.||++++-.+.+++.+.++.+
T Consensus 266 ~~l~~ei~Rslqfy~~~s~--~~~id~i~LaGggA~l~gL~~~i~qrl~~~ 314 (354)
T COG4972 266 GELTQEIRRSLQFYLSQSE--MVDIDQILLAGGGASLEGLAAAIQQRLSIP 314 (354)
T ss_pred HHHHHHHHHHHHHHHhccc--cceeeEEEEecCCcchhhHHHHHHHHhCCC
Confidence 555555555544 444 347999999999999999999999999854
No 48
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=99.00 E-value=6.1e-09 Score=111.21 Aligned_cols=173 Identities=15% Similarity=0.188 Sum_probs=98.6
Q ss_pred cceEeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCCchhhHHHHHHHHHHHH
Q 004210 167 KPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEVLSSYFAAQ 246 (768)
Q Consensus 167 ~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~d~~l~~~l~~~ 246 (768)
..+.++.|+.||.+.+.... .+...+||+|+||+|+|++++.- +.-.+-...+...+|-..+-..+.+.+...
T Consensus 141 ~~V~V~PQ~~~A~~~~~~~~-----~~~~~~lVVDIGG~T~Dv~~v~~--~~~~~~~~~~~~~~Gvs~~~~~I~~~l~~~ 213 (318)
T PF06406_consen 141 KDVEVFPQSVGAVFDALMDL-----DEDESVLVVDIGGRTTDVAVVRG--GLPDISKCSGTPEIGVSDLYDAIAQALRSA 213 (318)
T ss_dssp EEEEEEESSHHHHHHHHHTS------TTSEEEEEEE-SS-EEEEEEEG--GG--EEEEEEETTSSTHHHHHHHHHHTT--
T ss_pred eeEEEEcccHHHHHHHHHhh-----cccCcEEEEEcCCCeEEeeeecC--CccccchhccCCchhHHHHHHHHHHHHHHh
Confidence 35678999999998876552 23467999999999999999862 211233344456899988888888776541
Q ss_pred HhhhcccCccCChHHHHHHHHHHHHHhhhccCCCcccEEEeccccCcceEEEecHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004210 247 FKQQYDIDVYTNVKASIRLRASCEKLKKVLSANAEAPLNIECLMNEKDVKGFIRREEFEKLSSSLLERMRIPCQKALAGS 326 (768)
Q Consensus 247 ~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~i~i~~l~~~~d~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~ 326 (768)
+...+. ..++.+-... ..... +.....+.+ ..+++.++++..++++..-|.+.+..
T Consensus 214 -----~~~~s~---------~~~~~ii~~~--~~~~~--~~~~i~~~~-----~~~~v~~~i~~~~~~l~~~i~~~~~~- 269 (318)
T PF06406_consen 214 -----GIDTSE---------LQIDDIIRNR--KDKGY--LRQVINDED-----VIDDVSEVIEEAVEELINRILRELGD- 269 (318)
T ss_dssp -----SBHHHH---------HHHHHHHHTT--T-HHH--HHHHSSSHH-----HHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred -----cCCCcH---------HHHHHHHHhh--hccce--ecccccchh-----hHHHHHHHHHHHHHHHHHHHHHHHhh-
Confidence 111100 1111110000 00000 000001111 13444555555555555555555543
Q ss_pred CCCCCCcCEEEEecCCCChHHHHHHHHhhcC---CCCCCcCChhhHHHhHHH
Q 004210 327 GLNVEKIHSVELVGSGSRIPAISRMLNSLFN---REPGRTINASECVARGCA 375 (768)
Q Consensus 327 ~~~~~~i~~V~LvGG~srip~v~~~l~~~fg---~~v~~~~n~~eava~Gaa 375 (768)
..+++.|+|+||++. .+.+.|++.|+ ..+...-||+.|-|+|-+
T Consensus 270 ---~~~~~~I~~vGGGA~--ll~~~Ik~~~~~~~~~i~i~~~pqfAnv~G~~ 316 (318)
T PF06406_consen 270 ---FSDIDRIFFVGGGAI--LLKDAIKEAFPVPNERIVIVDDPQFANVRGFY 316 (318)
T ss_dssp ---S-S-SEEEEESTTHH--HHHHHHHHHHT--GGGEE--SSGGGHHHHHHH
T ss_pred ---hccCCeEEEECCcHH--HHHHHHHHhhCCCCCcEEECCCchhhHHHHHh
Confidence 347889999999974 56788888887 356778899999999964
No 49
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=98.98 E-value=1e-07 Score=97.83 Aligned_cols=180 Identities=13% Similarity=0.110 Sum_probs=101.4
Q ss_pred EeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEe-eCCeEEEEEEeCCCCCchhhHHHHHHHHHHHHHh
Q 004210 170 RLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASY-ENGHMKILSHAFDESLGGRDFDEVLSSYFAAQFK 248 (768)
Q Consensus 170 ~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~-~~~~~~vl~~~~~~~lGG~~~d~~l~~~l~~~~~ 248 (768)
..++|.+|.|.+..+.. .+..-.|+|+||-.+- ++.+ .+|.+.-.....-|.-|.-.|=+.+++.|
T Consensus 106 ~~v~EItaha~Ga~~~~------pp~v~tIIDIGGQDsK--~I~~d~~G~v~dF~MNdkCAAGTGrFLE~~A~~L----- 172 (293)
T TIGR03192 106 KAITEIACHARGANYMG------GNAVRTILDMGGQDCK--AIHCDEKGKVTNFLMNDKCAAGTGRGMEVISDLM----- 172 (293)
T ss_pred cceeeHHHHHHHHHHhc------CCCCCEEEEeCCCceE--EEEEcCCCcEeeeeecCcccccccHHHHHHHHHc-----
Confidence 46899999887654432 1244589999998555 4444 35555444555456667555555555544
Q ss_pred hhcccCccCChHHHHHHHHHHHHHh-hhccCCCcccEEEeccccCcceEEEecHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 004210 249 QQYDIDVYTNVKASIRLRASCEKLK-KVLSANAEAPLNIECLMNEKDVKGFIRREEFEKLSSSLLERMRIPCQKALAGSG 327 (768)
Q Consensus 249 ~~~~~~~~~~~~~~~rL~~~ae~~K-~~Ls~~~~~~i~i~~l~~~~d~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~ 327 (768)
++++. .+..+ +.+.. ....-+....+.-++-.-. -+.--++++ +++..+...+..-+...+++.+
T Consensus 173 ---gi~le----el~~~---a~~~~~~p~~Iss~CtVFAeSevi~-l~~~G~~~e---dI~aGl~~sia~rv~~~~~~~~ 238 (293)
T TIGR03192 173 ---QIPIA----DLGPR---SFDVETEPEAVSSICVVFAKSEALG-LLKAGYTKN---MVIAAYCQAMAERVVSLLERIG 238 (293)
T ss_pred ---CCCHH----HHHHH---HHhcCCCCCCcCCcceEeccHhHHH-HHHCCCCHH---HHHHHHHHHHHHHHHHHhcccC
Confidence 23321 12211 21211 1111112222222210000 001122333 3444444444444444444433
Q ss_pred CCCCCcCEEEEecCCCChHHHHHHHHhhcCCCCC-CcCChhhHHHhHHHHHhhH
Q 004210 328 LNVEKIHSVELVGSGSRIPAISRMLNSLFNREPG-RTINASECVARGCALQCAM 380 (768)
Q Consensus 328 ~~~~~i~~V~LvGG~srip~v~~~l~~~fg~~v~-~~~n~~eava~Gaa~~a~~ 380 (768)
+. ..|+|+||.++.|.+++.+++.+|.++. .+.+|+.+.|+|||++|..
T Consensus 239 i~----~~v~~~GGva~N~~l~~al~~~Lg~~v~~~p~~p~~~GAlGAAL~A~~ 288 (293)
T TIGR03192 239 VE----EGFFITGGIAKNPGVVKRIERILGIKAVDTKIDSQIAGALGAALFGYT 288 (293)
T ss_pred CC----CCEEEECcccccHHHHHHHHHHhCCCceeCCCCccHHHHHHHHHHHHH
Confidence 32 3589999999999999999999998776 5778999999999999864
No 50
>KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton]
Probab=98.89 E-value=1.2e-07 Score=97.59 Aligned_cols=116 Identities=16% Similarity=0.192 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEEeCCCCCHHHHHHHHHHH-HHcCCcceEeccchHHHHHHhhhcccCCCCCCCc
Q 004210 117 QILGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDVQRRAYLDAA-TIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPT 195 (768)
Q Consensus 117 el~a~~L~~l~~~a~~~~~~~~~~~VitVP~~~~~~qr~~l~~Aa-~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~ 195 (768)
+++.++.+|..+..- .....-.-++||-|++=+...|+.+.+.+ +...++...|..+++++|++-| ..
T Consensus 86 D~~~~~w~~~~~~~L-k~~p~ehP~litEp~wN~~~~Rek~~ElmFE~~nvPAf~L~k~~v~~AFA~G----------rs 154 (426)
T KOG0679|consen 86 DLFEMQWRYAYKNQL-KVNPEEHPVLITEPPWNTRANREKLTELMFEKLNVPAFYLAKTAVCTAFANG----------RS 154 (426)
T ss_pred HHHHHHHHHHHhhhh-hcCccccceeeecCCCCcHHHHHHHHHHHHhhcCCceEEEechHHHHHHhcC----------CC
Confidence 456667777664321 12223356899999988888888776654 6677778888888888887654 35
Q ss_pred EEEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCCchhhHHHHHHHHHHHH
Q 004210 196 YVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEVLSSYFAAQ 246 (768)
Q Consensus 196 ~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~d~~l~~~l~~~ 246 (768)
+.||+|+|+++|.++-+. +|.+--.++. -..+||+.++..+.+.|..+
T Consensus 155 talVvDiGa~~~svsPV~--DG~Vlqk~vv-ks~laGdFl~~~~~q~l~~~ 202 (426)
T KOG0679|consen 155 TALVVDIGATHTSVSPVH--DGYVLQKGVV-KSPLAGDFLNDQCRQLLEPK 202 (426)
T ss_pred ceEEEEecCCCceeeeee--cceEeeeeeE-ecccchHHHHHHHHHHHhhc
Confidence 789999999999998875 5544344444 57899999999999998875
No 51
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=98.77 E-value=9.2e-07 Score=91.85 Aligned_cols=177 Identities=20% Similarity=0.208 Sum_probs=109.6
Q ss_pred cceEeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCCchhhHHHHHHHHHHHH
Q 004210 167 KPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEVLSSYFAAQ 246 (768)
Q Consensus 167 ~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~d~~l~~~l~~~ 246 (768)
..-..++|.+|-+.+..... +..-.|+|+||--.- ++.+.+|.+.-..-+.-|.-|.-.|=+.+++.|
T Consensus 208 ~aD~~~~Ei~ah~kgA~~f~-------p~~dtIiDIGGQD~K--~i~i~dG~v~df~mN~~CAAGtGrFLE~~A~~L--- 275 (396)
T COG1924 208 GADKVVVEISAHAKGARYFA-------PDVDTVIDIGGQDSK--VIKLEDGKVDDFTMNDKCAAGTGRFLEVIARRL--- 275 (396)
T ss_pred cCCcceeeeehhHHHHHHhC-------CCCcEEEEecCccee--EEEEeCCeeeeeEeccccccccchHHHHHHHHh---
Confidence 33456778888776654432 112289999998555 455558877666666566666665655555443
Q ss_pred HhhhcccCccCChHHHHHHHHHHHHHhhhccCCCcccEEEec-----cccCcceEEEecHHHHHHHHHHHHHHHHHHHHH
Q 004210 247 FKQQYDIDVYTNVKASIRLRASCEKLKKVLSANAEAPLNIEC-----LMNEKDVKGFIRREEFEKLSSSLLERMRIPCQK 321 (768)
Q Consensus 247 ~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~i~i~~-----l~~~~d~~~~itr~~fe~~~~~~~~~i~~~i~~ 321 (768)
+.++.+ |-+.|.+.+..-.-++...+..++ +-.|. ..|+++..+...+..-+-.
T Consensus 276 -----gv~v~E-------~~~~A~~~~~~v~i~S~CaVF~eSevi~~~~~G~---------~~EdI~AGl~~Sv~~~v~~ 334 (396)
T COG1924 276 -----GVDVEE-------LGKLALKATPPVKINSRCAVFAESEVISALAEGA---------SPEDILAGLAYSVAENVAE 334 (396)
T ss_pred -----CCCHHH-------HHHHHhcCCCCcccCCeeEEEehHHHHHHHHcCC---------CHHHHHHHHHHHHHHHHHH
Confidence 333221 223333333321122222222221 11121 1366677766666655444
Q ss_pred -HHHhcCCCCCCcCEEEEecCCCChHHHHHHHHhhcCCCCCCcCChhhHHHhHHHHHhhH
Q 004210 322 -ALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQCAM 380 (768)
Q Consensus 322 -~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~Gaa~~a~~ 380 (768)
+++.-.... -|+|+||.+....+.+++++.+|.++..+.+|.-.-|+|||++|..
T Consensus 335 ~~~~~~~i~~----~iv~~GGva~n~av~~ale~~lg~~V~vP~~~ql~GAiGAAL~a~~ 390 (396)
T COG1924 335 KVIKRVDIEE----PIVLQGGVALNKAVVRALEDLLGRKVIVPPYAQLMGAIGAALIAKE 390 (396)
T ss_pred HHhhccCCCC----CEEEECcchhhHHHHHHHHHHhCCeeecCCccchhhHHHHHHHHhh
Confidence 555544332 2999999999999999999999999999999999999999999853
No 52
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=98.70 E-value=1.9e-06 Score=92.10 Aligned_cols=175 Identities=15% Similarity=0.056 Sum_probs=104.2
Q ss_pred EeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCCchhhHHHHHHHHHHHHHhh
Q 004210 170 RLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEVLSSYFAAQFKQ 249 (768)
Q Consensus 170 ~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~d~~l~~~l~~~~~~ 249 (768)
..++|-+|.|.+..+... ..+..-.|+|+||- |.-++.+.+|.+.-...++-+.-|+-.|=+.+++.|
T Consensus 220 ~iv~EItaha~GA~~L~p----~~~~v~TIIDIGGQ--DsK~I~l~~G~v~dF~MNdkCAAGTGrFLE~~A~~L------ 287 (404)
T TIGR03286 220 LIQEELTVNSKGAVYLAD----KQEGPATVIDIGGM--DNKAISVWDGIPDNFTMGGICAGASGRFLEMTAKRL------ 287 (404)
T ss_pred ceEEEEhhHHHHHHHhcc----cCCCCcEEEEeCCC--ceEEEEEcCCceeeEEEcCcccccCcHHHHHHHHHh------
Confidence 457888888765443221 12345799999996 444555567766555566566666666666666555
Q ss_pred hcccCccCChHHHHHHHHHHHHHh---hhccCCCcccEEEe----ccccCcceEEEecHHHHHHHHHHHHHHHHHHHH-H
Q 004210 250 QYDIDVYTNVKASIRLRASCEKLK---KVLSANAEAPLNIE----CLMNEKDVKGFIRREEFEKLSSSLLERMRIPCQ-K 321 (768)
Q Consensus 250 ~~~~~~~~~~~~~~rL~~~ae~~K---~~Ls~~~~~~i~i~----~l~~~~d~~~~itr~~fe~~~~~~~~~i~~~i~-~ 321 (768)
++++. .|-..+.+.+ ..+++... +.-+ .+.. .-.++ ++++..+...+..-+. .
T Consensus 288 --gi~ie-------El~~lA~~~~~~pv~IsS~Ct--VFaeSevIsll~-----~G~~~---eDIaAGl~~SIa~rv~~~ 348 (404)
T TIGR03286 288 --GVDIT-------ELGKLALKGMPEKVRMNSYCI--VFGIQDLVTALA-----EGASP---EDVAAAACHSVAEQVYEQ 348 (404)
T ss_pred --CCCHH-------HHHHHHHhCCCCCCCccCccc--ccccHhHHHHHH-----CCCCH---HHHHHHHHHHHHHHHHHH
Confidence 22221 1212222221 11222211 1111 0111 01333 3444455555544444 2
Q ss_pred HHHhcCCCCCCcCEEEEecCCCChHHHHHHHHhhcCCCCCCcCChhhHHHhHHHHHhh
Q 004210 322 ALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQCA 379 (768)
Q Consensus 322 ~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~Gaa~~a~ 379 (768)
+++..++. +.|+++||.++.+.+.+.+++.+|.++..+.+|+.+.|+|||++|.
T Consensus 349 l~~~~~i~----~~VvftGGva~N~gvv~ale~~Lg~~iivPe~pq~~GAiGAAL~A~ 402 (404)
T TIGR03286 349 QLQEIDVR----EPVILVGGTSLIEGLVKALGDLLGIEVVVPEYSQYIGAVGAALLAS 402 (404)
T ss_pred HhhcCCCC----CcEEEECChhhhHHHHHHHHHHhCCcEEECCcccHHHHHHHHHHhc
Confidence 34443322 3499999999999999999999999999999999999999999884
No 53
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=98.65 E-value=7.5e-06 Score=83.14 Aligned_cols=177 Identities=16% Similarity=0.090 Sum_probs=97.8
Q ss_pred eccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEee-CCeEEEEEEeCCCCCchhhHHHHHHHHHHHHHhh
Q 004210 171 LMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYE-NGHMKILSHAFDESLGGRDFDEVLSSYFAAQFKQ 249 (768)
Q Consensus 171 li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~-~~~~~vl~~~~~~~lGG~~~d~~l~~~l~~~~~~ 249 (768)
.++|.+|.|.+..+.. |..-.|+|+||--+-+ +.+. +|.+.-.....-|.-|.-.|=+.+++.|
T Consensus 80 ~vtEIt~ha~GA~~~~-------p~~~tIiDIGGQD~K~--I~~~~~G~v~~f~MNdkCAAGTG~FLe~~A~~L------ 144 (262)
T TIGR02261 80 HFYSMTTHARGAIYLN-------PEARAVLDIGALHGRA--IRMDERGKVEAYKMTSQCASGSGQFLENIARYL------ 144 (262)
T ss_pred CeeEEeHHHHHHHHHC-------CCCCEEEEeCCCceEE--EEEcCCCcEeeEEecCcccccccHHHHHHHHHh------
Confidence 3578888887655432 3344899999996664 5553 4555444455456667665655555544
Q ss_pred hcccCccCChHHHHHHHHHHHHHhhhccCCCcccEEEeccccCcceEEEecHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 004210 250 QYDIDVYTNVKASIRLRASCEKLKKVLSANAEAPLNIECLMNEKDVKGFIRREEFEKLSSSLLERMRIPCQKALAGSGLN 329 (768)
Q Consensus 250 ~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~i~i~~l~~~~d~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~ 329 (768)
++++. .+. ..+.+.+....-+....+.-++-.-. -+.--.+| ++++..+...+..-+-..+++.+..
T Consensus 145 --~i~le----el~---~~a~~~~~~~~iss~CtVFaeSevi~-~~~~G~~~---edI~aGl~~sia~r~~~~~~~~~~~ 211 (262)
T TIGR02261 145 --GIAQD----EIG---SLSQQADNPEKVSGICAVLAETDVIN-MVSRGISA---PNILKGIHESMADRLAKLLKSLGAL 211 (262)
T ss_pred --CCCHH----HHH---HHHhcCCCCCCcCCCceEEchhhHHH-HHHCCCCH---HHHHHHHHHHHHHHHHHHHhccCCC
Confidence 23221 111 22223332222222222322210000 00112333 3344445555544444444443211
Q ss_pred CCCcCEEEEecCCCChHHHHHHHHhhcC-CC----CCCcCChhhHHHhHHHHHh
Q 004210 330 VEKIHSVELVGSGSRIPAISRMLNSLFN-RE----PGRTINASECVARGCALQC 378 (768)
Q Consensus 330 ~~~i~~V~LvGG~srip~v~~~l~~~fg-~~----v~~~~n~~eava~Gaa~~a 378 (768)
-..|+|+||.++.+.+.+.|++.++ .+ +..+.+|+.+.|+|||++|
T Consensus 212 ---~~~v~~~GGva~n~~~~~~le~~l~~~~~~~~v~~~~~~q~~gAlGAAl~~ 262 (262)
T TIGR02261 212 ---DGTVLCTGGLALDAGLLEALKDAIQEAKMAVAAENHPDAIYAGAIGAALWG 262 (262)
T ss_pred ---CCcEEEECcccccHHHHHHHHHHhccCCcceEecCCCcchHHHHHHHHHcC
Confidence 1359999999999999999999884 33 4556789999999999875
No 54
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=98.60 E-value=1.5e-06 Score=95.85 Aligned_cols=192 Identities=13% Similarity=0.110 Sum_probs=110.4
Q ss_pred EEEEcCccceEEEEEEcCCceEEEeCCCCCcc-ceEEEE-eeCCceeecHHHHhhhhhCCcchHhHHHHhcCCCCCChHH
Q 004210 4 VGFDIGNENCVIAAVKQGGMLDVLLNDESKRE-TPTVVS-FSEKQRFLGSAGAASAMMNPKSTISQVKRLLGRKFREDDV 81 (768)
Q Consensus 4 iGID~Gtt~s~va~~~~~~~~~i~~n~~~~r~-~Ps~v~-~~~~~~~~G~~A~~~~~~~p~~~~~~~k~llg~~~~~~~~ 81 (768)
+-||.||.++++++.....|..+..+..+++. ..++.. -..+.+.+|..+...... +..
T Consensus 9 iVIDnGS~~~k~Gfag~~~P~~V~ps~~~~~~~~~~~~~~~~~~~~~v~ne~~~~~~~-~~~------------------ 69 (444)
T COG5277 9 IVIDNGSGTTKAGFAGNDTPTTVFPSIVGRRRDEDSVMEDTEEKDTYVGNEAQNDRDN-SLL------------------ 69 (444)
T ss_pred EEEeCCCceEEeeecCCCCceeecccccccccccccccccccccccccCchhhhccCC-ccc------------------
Confidence 78999999999999888776666655555543 333222 112334555555321100 000
Q ss_pred HhhhccCCceeeecCCCCEEEEEEecCceeEecHHHHHHHHHHHHHHHH-HhhccCCCCeEEEEeCCCCCHHHHHHHHHH
Q 004210 82 QKDLKLFPFETCESHDGGILIMLEYLGETHKFTPVQILGMLLSNLKQIT-EKNIKIPISNCVIGVPCYLTDVQRRAYLDA 160 (768)
Q Consensus 82 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~el~a~~L~~l~~~a-~~~~~~~~~~~VitVP~~~~~~qr~~l~~A 160 (768)
....+..+|. ...+.. ...+.+++...- .......-..+++|-|..+....|..+.+.
T Consensus 70 --------~~~~p~~~g~----------i~~W~~---~e~~w~~~~~~~~~~~~~~~~~pllltep~~n~~~~re~~~e~ 128 (444)
T COG5277 70 --------ELRYPIENGI----------ILNWDA---MEQIWDYTFFNKGDLLPSPEEHPLLLTEPPLNPPSNREKITEL 128 (444)
T ss_pred --------eeecccccCc----------cCCcHH---HHHHHHHhhcchhhccCCCcCCceEEeccCCCcHHHHHHHHHH
Confidence 0000011222 223432 223333333221 111122344799999999999888876655
Q ss_pred H-HHcCCcceEeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCCchhhHHHHH
Q 004210 161 A-TIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEVL 239 (768)
Q Consensus 161 a-~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~d~~l 239 (768)
+ +...++.+.+...+.+++.+.+ .. ..+.+|+|+|.+.|+++-+- +|.. +........+||++++..|
T Consensus 129 ~fE~~~vp~~~~~~~~~l~~ya~g--~~------~~~g~ViD~G~~~t~v~PV~--DG~~-l~~a~~ri~~gG~~it~~l 197 (444)
T COG5277 129 LFETLNVPALYLAIQAVLSLYASG--SS------DETGLVIDSGDSVTHVIPVV--DGIV-LPKAVKRIDIGGRDITDYL 197 (444)
T ss_pred HHHhcCCcceEeeHHHHHHHHhcC--CC------CCceEEEEcCCCceeeEeee--cccc-ccccceeeecCcHHHHHHH
Confidence 4 5556666666666666554443 21 14789999999999988764 2322 2233335679999999999
Q ss_pred HHHHHHH
Q 004210 240 SSYFAAQ 246 (768)
Q Consensus 240 ~~~l~~~ 246 (768)
.+.|...
T Consensus 198 ~~lL~~~ 204 (444)
T COG5277 198 KKLLREK 204 (444)
T ss_pred HHHHhhc
Confidence 9888874
No 55
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=98.55 E-value=3.2e-07 Score=99.07 Aligned_cols=164 Identities=14% Similarity=0.103 Sum_probs=92.2
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHHH--------HcCCcceEeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEE
Q 004210 138 ISNCVIGVPCYLTDVQRRAYLDAAT--------IAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQV 209 (768)
Q Consensus 138 ~~~~VitVP~~~~~~qr~~l~~Aa~--------~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dv 209 (768)
..-.+||.+...-.+-++.+..+.. .||+++-.++. |.|++.+... . ++...++++|+|||||++
T Consensus 88 ~~ahIITg~~~~~~Nl~~~v~~~~~~~gdfVVA~AG~~le~iva-~~ASg~avLs-e-----Eke~gVa~IDIGgGTT~i 160 (475)
T PRK10719 88 SGAVIITGETARKENAREVVMALSGSAGDFVVATAGPDLESIIA-GKGAGAQTLS-E-----ERNTRVLNIDIGGGTANY 160 (475)
T ss_pred ccEEEEEechhHHHHHHHHHHHhcccccceeeeccCccHHHhhh-HHHhhHHHhh-h-----hccCceEEEEeCCCceEE
Confidence 3456777776555444444443221 26777666666 8887765542 1 456789999999999999
Q ss_pred EEEEeeCCeEEEEEEeCCCCCchhhHHHHHHHHHHHHHhhhcccCccCChHHHHHHHHHHHHHhhhccCCCcccEEEecc
Q 004210 210 CVASYENGHMKILSHAFDESLGGRDFDEVLSSYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANAEAPLNIECL 289 (768)
Q Consensus 210 sv~~~~~~~~~vl~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~i~i~~l 289 (768)
+++.- |. +..+. ..++||+.+... -+ ..+. .-.| ...+|.+. +-..+
T Consensus 161 aVf~~--G~--l~~T~-~l~vGG~~IT~D-~~---------~~i~-yis~-~~~~l~~~---~~~~~------------- 207 (475)
T PRK10719 161 ALFDA--GK--VIDTA-CLNVGGRLIETD-SQ---------GRVT-YISP-PGQMILDE---LGLAI------------- 207 (475)
T ss_pred EEEEC--CE--EEEEE-EEecccceEEEC-CC---------CCEE-EECh-HHHHHHHH---cCCCc-------------
Confidence 99874 43 34444 678999987643 10 0000 0011 11112111 11001
Q ss_pred ccCcceEEEecHHHHHHHHHHHHHHHHHHHHH-------HHHh-cCCC-CCCcCEEEEecCCCCh
Q 004210 290 MNEKDVKGFIRREEFEKLSSSLLERMRIPCQK-------ALAG-SGLN-VEKIHSVELVGSGSRI 345 (768)
Q Consensus 290 ~~~~d~~~~itr~~fe~~~~~~~~~i~~~i~~-------~l~~-~~~~-~~~i~~V~LvGG~sri 345 (768)
..--.++.+++..+|+.+.+.+.+.+.. .|-. -.++ ...++.|.+.||-+..
T Consensus 208 ----~~G~~~~~~~L~~i~~~Ma~~l~~~i~~~~~~~~~~l~~~~~l~~~~~~~~i~fSGGVad~ 268 (475)
T PRK10719 208 ----TDGRSLTGEQLQQVTRRMAELLVEVIGGALSPLAQALMTTKLLPAGVPPEIITFSGGVGDC 268 (475)
T ss_pred ----cccccCCHHHHHHHHHHHHHHHHHHhCCCCChhHHhhccCCCCCCCCCCCEEEEecchHhh
Confidence 1112466788888887766666665541 1111 1232 3568999999997654
No 56
>PF07520 SrfB: Virulence factor SrfB; InterPro: IPR009216 This entry represents proteins of unknown function. It has been shown in Salmonella enterica that srfB is one of the genes activated by the global signal transduction/regulatory system SsrA/B []. This activation takes place within eukaryotic cells. The activated genes include pathogenicity island 2 (SPI-2) genes and at least 10 other genes (srfB is one of them) which are believed to be horizontally acquired, and to be involved in virulence/pathogenicity [].
Probab=98.36 E-value=8.3e-05 Score=87.14 Aligned_cols=330 Identities=17% Similarity=0.193 Sum_probs=183.3
Q ss_pred eecHHHHhhhhh----CCcchHhHHHHhcCCC--------CCChHHH--hh--hccCCceeeecCCCCEEEEEE-ec---
Q 004210 48 FLGSAGAASAMM----NPKSTISQVKRLLGRK--------FREDDVQ--KD--LKLFPFETCESHDGGILIMLE-YL--- 107 (768)
Q Consensus 48 ~~G~~A~~~~~~----~p~~~~~~~k~llg~~--------~~~~~~~--~~--~~~~~~~~~~~~~g~~~~~v~-~~--- 107 (768)
-+|.+|...+.. .....+.+.||+|.-. ++..... .+ .-..|+.-.-+++|.+.+.+. ..
T Consensus 331 RVG~EA~RLa~~r~GtEg~TGlSSPKRYLWDe~~~~q~WRFn~~~~~~~~eP~ata~p~~~liN~~G~~L~~l~~~~~r~ 410 (1002)
T PF07520_consen 331 RVGPEAARLASQRRGTEGSTGLSSPKRYLWDERPYEQGWRFNSAYVKSQNEPLATAAPFTNLINDDGQPLYQLDPEDERL 410 (1002)
T ss_pred eecHHHHHHHHHhcCCccccCCCCchhhccCCCccCCCcccCCCCCCCccCchhhhHHHHHhhcccCcchhhhcCccccC
Confidence 478888765532 2334578889988632 2111110 00 011222222334566654441 10
Q ss_pred -CceeEecHHHHHHHHHHHHHHHHHhhcc--------------CCCCeEEEEeCCCCCHHHHHHHHHHHHHc--------
Q 004210 108 -GETHKFTPVQILGMLLSNLKQITEKNIK--------------IPISNCVIGVPCYLTDVQRRAYLDAATIA-------- 164 (768)
Q Consensus 108 -~~~~~~~~~el~a~~L~~l~~~a~~~~~--------------~~~~~~VitVP~~~~~~qr~~l~~Aa~~A-------- 164 (768)
.-...||-.-+..++|..+.-.|--+.+ .....+++|||+-....+|+.+++.++.|
T Consensus 411 pvf~p~ySRSSLMtfML~EiL~QAL~QINSpa~R~r~~~~~~PR~LR~IILT~P~AMPk~Er~ifr~r~~~Ai~LvWk~l 490 (1002)
T PF07520_consen 411 PVFSPHYSRSSLMTFMLSEILAQALMQINSPAQRLRRGHSDAPRRLRRIILTLPPAMPKPEREIFRRRMEEAIGLVWKAL 490 (1002)
T ss_pred ccccccccHHHHHHHHHHHHHHHHHHHhcCHHHHhhcccCCCChhhhheeEECCCCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 1123466667777777777776644432 23567999999999999999998888765
Q ss_pred CCc---------------------ceEeccchHHHHHHhhhc------------------ccCCC------CCCCcEEEE
Q 004210 165 GLK---------------------PLRLMHDCTATALGYGIY------------------KTDFS------NVGPTYVVF 199 (768)
Q Consensus 165 Gl~---------------------~~~li~Ep~Aaal~y~~~------------------~~~~~------~~~~~~vlv 199 (768)
|+. +..=-+|.||.-+=|.+. +.+.. ....-.|.-
T Consensus 491 Gw~~~~~~~~~~~~~~~~~~~~P~v~~~WDEATC~QlVyLYnE~~~~fgG~~~~FF~~~~rp~~~~~~~~~~~~slriAS 570 (1002)
T PF07520_consen 491 GWHPWDDDFDTNKDREKSWVPLPEVQMEWDEATCGQLVYLYNEIQVKFGGRAEEFFALMARPDRQPAPGEDPGPSLRIAS 570 (1002)
T ss_pred CCCCCCCCcccccccccccCCCCceeEEeecceeeeeeehhHHHHHHcCCCHHHHHHHhcCCCccccccCCCCCceEEEE
Confidence 532 111124555544333221 11110 123456899
Q ss_pred EEeCCceEEEEEEEee----CC-eEEEEEE---eCCCCCchhhHHHHHHH-HHHHHHhhh---cc-------------cC
Q 004210 200 VDIGHCDTQVCVASYE----NG-HMKILSH---AFDESLGGRDFDEVLSS-YFAAQFKQQ---YD-------------ID 254 (768)
Q Consensus 200 ~D~GggT~dvsv~~~~----~~-~~~vl~~---~~~~~lGG~~~d~~l~~-~l~~~~~~~---~~-------------~~ 254 (768)
+|+||||||+.|-.+. .| ...+.-. .-+-.+.|+||-..+++ +++..+... .+ .+
T Consensus 571 IDIGGGTTDL~It~Y~ld~G~g~nv~I~P~q~FReGFkvAGDDiLldVI~~~VlPal~~aL~~aG~~~~~~ll~~LfG~d 650 (1002)
T PF07520_consen 571 IDIGGGTTDLMITQYRLDDGQGSNVKITPEQLFREGFKVAGDDILLDVIQRIVLPALQQALKKAGVADPRALLSRLFGGD 650 (1002)
T ss_pred EecCCCcceeeEEEEEeccCCcceeEECcchhhhhhcccccHHHHHHHHHHHhHHHHHHHHHHhcccCHHHHHHHHhCCc
Confidence 9999999999998886 22 2222211 12356889998887665 444433322 11 11
Q ss_pred ccCC-hHH-------------HHHHHHHHHHHhh-------------hcc-CCCcccE------EEec------cccCcc
Q 004210 255 VYTN-VKA-------------SIRLRASCEKLKK-------------VLS-ANAEAPL------NIEC------LMNEKD 294 (768)
Q Consensus 255 ~~~~-~~~-------------~~rL~~~ae~~K~-------------~Ls-~~~~~~i------~i~~------l~~~~d 294 (768)
-... .+. ..+++.++|..=. .|. ......+ .+.. -++=.+
T Consensus 651 g~~~~~~~lRqQ~~lQv~~Pi~l~iL~~yE~~d~~~~~~~~~~~f~ell~~~~Pt~~vl~yi~~~~~~~~~~~~~Fdild 730 (1002)
T PF07520_consen 651 GQSDQDRVLRQQFTLQVFIPIGLAILKAYENYDPLDPSAEIDATFGELLEREPPTAAVLDYINEEVRRLPAGAPDFDILD 730 (1002)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCccccccHHHhcCCcCCcHHHHHHHHHHHhhcCCCCCCcceec
Confidence 0000 000 1235555555321 111 0000000 0000 011124
Q ss_pred eEEEecHHHHHHHHH---HHHHHHHHHHHHHHHhcCCCCCCcCEEEEecCCCChHHHHHHHHhhcCCCC-----------
Q 004210 295 VKGFIRREEFEKLSS---SLLERMRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNREP----------- 360 (768)
Q Consensus 295 ~~~~itr~~fe~~~~---~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~fg~~v----------- 360 (768)
+.+.|+...+...+. -.+......+-+++... +.|-++|+|--||+|.||..+++....++
T Consensus 731 v~l~i~~~~l~~~~~~~r~~i~~~L~~LcEvv~~Y-----~CDVLLLTGRPSrlPgvqalfr~~~pvPp~RIv~l~~Y~t 805 (1002)
T PF07520_consen 731 VPLEIDLEKLHAAFLSDRMVICKTLRALCEVVHHY-----DCDVLLLTGRPSRLPGVQALFRHLLPVPPDRIVPLHGYRT 805 (1002)
T ss_pred ceEEEcHHHHHHHHHhCcccHHHHHHHHHHHHHHh-----CCCEEEEcCCccccHHHHHHHHHhCCCCcccEEecCCeee
Confidence 567899999888764 45555555555555554 46789999999999999999999986433
Q ss_pred ---------CCcCChhhHHHhHHHHHhhHhc
Q 004210 361 ---------GRTINASECVARGCALQCAMLS 382 (768)
Q Consensus 361 ---------~~~~n~~eava~Gaa~~a~~ls 382 (768)
.+--||-..||.||.+++....
T Consensus 806 g~WYPF~~~~rI~dPKTTaaVGAmLc~La~~ 836 (1002)
T PF07520_consen 806 GNWYPFNDQGRIDDPKTTAAVGAMLCLLAEG 836 (1002)
T ss_pred cccccCCCCCcCCCchHHHHHHHHHHHHhcc
Confidence 2233899999999987765444
No 57
>PRK13317 pantothenate kinase; Provisional
Probab=98.23 E-value=0.00013 Score=75.82 Aligned_cols=48 Identities=21% Similarity=0.243 Sum_probs=42.5
Q ss_pred CcCEEEEec-CCCChHHHHHHHHhhc---CCCCCCcCChhhHHHhHHHHHhh
Q 004210 332 KIHSVELVG-SGSRIPAISRMLNSLF---NREPGRTINASECVARGCALQCA 379 (768)
Q Consensus 332 ~i~~V~LvG-G~srip~v~~~l~~~f---g~~v~~~~n~~eava~Gaa~~a~ 379 (768)
.+..|+++| |.++.|.+++.+.+.+ +.++..+.||..+.|+|||+++.
T Consensus 222 ~~~~Ivf~G~gla~n~~l~~~l~~~l~~~~~~~~~p~~~~~~gAlGAaL~a~ 273 (277)
T PRK13317 222 NIENIVYIGSTLTNNPLLQEIIESYTKLRNCTPIFLENGGYSGAIGALLLAT 273 (277)
T ss_pred CCCeEEEECcccccCHHHHHHHHHHHhcCCceEEecCCCchhHHHHHHHHhh
Confidence 356799999 7999999999999988 57788899999999999999875
No 58
>PRK15027 xylulokinase; Provisional
Probab=98.20 E-value=0.00021 Score=81.49 Aligned_cols=85 Identities=16% Similarity=0.135 Sum_probs=61.2
Q ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCEEEEecCCCChHHHHHHHHhhcCCCCCCcCChhhHHHhHHHHH
Q 004210 298 FIRREEFEKLSSSLLERMRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQ 377 (768)
Q Consensus 298 ~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~Gaa~~ 377 (768)
..+|.+|-..+-+-+.-....+-+.++..+. .++.|+++||+++.+.+.+++.+.||.++....+.+++.++|||+.
T Consensus 355 ~~~~~~l~rAvlEgia~~~~~~~~~l~~~g~---~~~~i~~~GGga~s~~w~Qi~Adv~g~pv~~~~~~~~~~a~GaA~l 431 (484)
T PRK15027 355 QHGPNELARAVLEGVGYALADGMDVVHACGI---KPQSVTLIGGGARSEYWRQMLADISGQQLDYRTGGDVGPALGAARL 431 (484)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHcCC---CccEEEEeCcccCCHHHHHHHHHHhCCeEEeecCCCcchHHHHHHH
Confidence 3467776654443333233333344554443 4788999999999999999999999999976667777889999999
Q ss_pred hhHhcCCc
Q 004210 378 CAMLSPQY 385 (768)
Q Consensus 378 a~~ls~~~ 385 (768)
|+.-.+.+
T Consensus 432 A~~~~G~~ 439 (484)
T PRK15027 432 AQIAANPE 439 (484)
T ss_pred HHHhcCCc
Confidence 98765543
No 59
>PRK10331 L-fuculokinase; Provisional
Probab=98.17 E-value=0.00014 Score=82.63 Aligned_cols=53 Identities=19% Similarity=0.176 Sum_probs=45.0
Q ss_pred CcCEEEEecCCCChHHHHHHHHhhcCCCCCCcCChhhHHHhHHHHHhhHhcCCc
Q 004210 332 KIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQCAMLSPQY 385 (768)
Q Consensus 332 ~i~~V~LvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~Gaa~~a~~ls~~~ 385 (768)
.++.|.++||+++.+.+.+++.+.||.++.... ..|+.++|||+.|+.-.+.+
T Consensus 389 ~~~~i~~~GGga~s~~w~Qi~Advlg~pV~~~~-~~e~~a~GaA~la~~~~G~~ 441 (470)
T PRK10331 389 KASELLLVGGGSRNALWNQIKANMLDIPIKVLD-DAETTVAGAAMFGWYGVGEF 441 (470)
T ss_pred CCceEEEEcccccCHHHHHHHHHhcCCeeEecC-cccchHHHHHHHHHHhcCCC
Confidence 478899999999999999999999999886555 45688999999998765543
No 60
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=98.15 E-value=0.00022 Score=80.69 Aligned_cols=84 Identities=15% Similarity=0.073 Sum_probs=57.4
Q ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCEEEEecCCCChHHHHHHHHhhcCCCCCCcCChhhHHHhHHHHH
Q 004210 298 FIRREEFEKLSSSLLERMRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQ 377 (768)
Q Consensus 298 ~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~Gaa~~ 377 (768)
.-+|.+|-..+-+-+.-....+-+.+++.+. ..++.|.++||+++.|.+.+++.+.||.++...-+ .++.++|||+.
T Consensus 361 ~~~~~~l~rAvlEgia~~~r~~~e~l~~~~~--~~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~~~~-~e~~~lGaA~~ 437 (465)
T TIGR02628 361 NTTRGHIYRAALEGLTAQLKRNLQMLEQIGQ--FKASELLLVGGGSKNTLWNQIRANMLDIPVKVVDD-AETTVAGAAMF 437 (465)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCcceEEEecCccCCHHHHHHhhhhcCCeeEeccC-CcchHHHHHHH
Confidence 3456665444333333223333344444431 14788999999999999999999999998865555 46889999999
Q ss_pred hhHhcCC
Q 004210 378 CAMLSPQ 384 (768)
Q Consensus 378 a~~ls~~ 384 (768)
|+.-.+.
T Consensus 438 a~~a~G~ 444 (465)
T TIGR02628 438 GFYGVGE 444 (465)
T ss_pred HHHhcCc
Confidence 9866554
No 61
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=98.00 E-value=0.00015 Score=76.80 Aligned_cols=177 Identities=14% Similarity=0.123 Sum_probs=103.6
Q ss_pred EeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEee-CCeEEEEEEeCCCCCchhhHHHHHHHHHHHHHh
Q 004210 170 RLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYE-NGHMKILSHAFDESLGGRDFDEVLSSYFAAQFK 248 (768)
Q Consensus 170 ~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~-~~~~~vl~~~~~~~lGG~~~d~~l~~~l~~~~~ 248 (768)
.+++|.+|-|.+..+.. |..-.|+|+||-.+-+ +.+. +|.+.-.....-|.-|.-.|=+.+++.|
T Consensus 249 ~vitEItcHA~GA~~l~-------P~vrTIIDIGGQDsK~--I~ld~~G~V~dF~MNDKCAAGTGrFLE~mA~~L----- 314 (432)
T TIGR02259 249 HIRSEILCHGLGAHLMY-------PGTRTVLDIGGQDTKG--IQIDDHGIVENFQMNDRCAAGCGRYLGYIADEM----- 314 (432)
T ss_pred ceeeeHHHHHHHHHHHC-------CCCCEEEEeCCCceEE--EEEcCCCcEeeeeecCcccccchHHHHHHHHHc-----
Confidence 45689998887654432 3445899999996664 5554 3555444555456667666666665544
Q ss_pred hhcccCccCChHHHHHHHHHHHHHhhhccCCCcccEEEeccccCcceEEEecHHHHHHHHHHHHHHHHHHHHHHHHhc-C
Q 004210 249 QQYDIDVYTNVKASIRLRASCEKLKKVLSANAEAPLNIECLMNEKDVKGFIRREEFEKLSSSLLERMRIPCQKALAGS-G 327 (768)
Q Consensus 249 ~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~i~i~~l~~~~d~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~-~ 327 (768)
++++. .+. ..+.+.+....-++...+.-++-.-. -+.--+++ ++++..+...+..-+...+.+. +
T Consensus 315 ---gi~le----El~---~lA~~a~~pv~ISS~CtVFAESEVIs-lla~G~~r---eDIaAGL~~SIA~Rv~s~l~r~~~ 380 (432)
T TIGR02259 315 ---NMGLH----ELG---PLAMKSSKPARINSTCTVFAGAELRD-RLALGDKR---EDILAGLHRAIILRAISIISRSGG 380 (432)
T ss_pred ---CCCHH----HHH---HHHhcCCCCCCcCCcceEEehHHHHH-HHHCCCCH---HHHHHHHHHHHHHHHHHHHhcccC
Confidence 23221 111 22333333332223333332210000 00112333 3344555555555444444443 2
Q ss_pred CCCCCcCEEEEecCCCChHHHHHHHHhhcC-----CCCCCcCChhhHHHhHHHHHh
Q 004210 328 LNVEKIHSVELVGSGSRIPAISRMLNSLFN-----REPGRTINASECVARGCALQC 378 (768)
Q Consensus 328 ~~~~~i~~V~LvGG~srip~v~~~l~~~fg-----~~v~~~~n~~eava~Gaa~~a 378 (768)
+ -..|+|+||.++.+.+.+.|++.++ .++..+.+|+.+.|+|||++|
T Consensus 381 i----~~~VvftGGvA~N~gvv~aLe~~L~~~~~~~~V~Vp~~pq~~GALGAAL~a 432 (432)
T TIGR02259 381 I----TDQFTFTGGVAKNEAAVKELRKLIKENYGEVQINIDPDSIYTGALGASEFA 432 (432)
T ss_pred C----CCCEEEECCccccHHHHHHHHHHHccccCCCeEecCCCccHHHHHHHHHhC
Confidence 2 2459999999999999999999994 567788999999999999875
No 62
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=97.98 E-value=0.0011 Score=76.14 Aligned_cols=52 Identities=12% Similarity=0.110 Sum_probs=44.7
Q ss_pred CcCEEEEecCCCChHHHHHHHHhhcCCCCCCcCChhhHHHhHHHHHhhHhcCC
Q 004210 332 KIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQCAMLSPQ 384 (768)
Q Consensus 332 ~i~~V~LvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~Gaa~~a~~ls~~ 384 (768)
.++.|.++||+++.+.+.+++.+.||.++....++ |+.++|||+.|+.-.+.
T Consensus 401 ~~~~i~~~GGga~s~~w~Qi~Adv~g~pv~~~~~~-e~~a~GaA~la~~~~G~ 452 (505)
T TIGR01314 401 PLNMIQATGGFASSEVWRQMMSDIFEQEIVVPESY-ESSCLGACILGLKALGL 452 (505)
T ss_pred CCcEEEEecCcccCHHHHHHHHHHcCCeeEecCCC-CcchHHHHHHHHHhcCc
Confidence 47899999999999999999999999988655554 68899999999876554
No 63
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=97.98 E-value=0.00038 Score=79.50 Aligned_cols=81 Identities=20% Similarity=0.083 Sum_probs=52.8
Q ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCcCEEEEecCCCChHHHHHHHHhhcCCCCCCcCChhhHHHhHHHH
Q 004210 298 FIRREEFEKLSSSLLERMRIPCQKALAGS-GLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCAL 376 (768)
Q Consensus 298 ~itr~~fe~~~~~~~~~i~~~i~~~l~~~-~~~~~~i~~V~LvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~Gaa~ 376 (768)
..+|.+|-+.+-+-+.-.....-+.|.+. +. .++.|.++||++|.+.+.+++.+.||.++..... .|+.+.|+|+
T Consensus 369 ~~~~~~l~ravlEgva~~l~~~~~~l~~~~g~---~~~~i~~~GGgars~~w~Qi~Ad~~g~~v~~~~~-~e~~a~g~A~ 444 (502)
T COG1070 369 PHTRAHLARAVLEGVAFALADGLEALEELGGK---PPSRVRVVGGGARSPLWLQILADALGLPVVVPEV-EEAGALGGAA 444 (502)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CccEEEEECCcccCHHHHHHHHHHcCCeeEecCc-ccchHHHHHH
Confidence 44666665554443333333333445444 43 4678999999999999999999999998875544 4555555555
Q ss_pred HhhHhc
Q 004210 377 QCAMLS 382 (768)
Q Consensus 377 ~a~~ls 382 (768)
.++...
T Consensus 445 ~~~~~~ 450 (502)
T COG1070 445 LAAAAL 450 (502)
T ss_pred HHHHHh
Confidence 555443
No 64
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=97.81 E-value=0.00038 Score=69.57 Aligned_cols=189 Identities=18% Similarity=0.186 Sum_probs=99.0
Q ss_pred HHcCCcceEeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCCchhhHHHHHHH
Q 004210 162 TIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEVLSS 241 (768)
Q Consensus 162 ~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~d~~l~~ 241 (768)
+..|.++...=-|+.+|.+...... ..+....|+|+||||||.+++.-.+ .+.-+.-. -.|+-++..|..
T Consensus 106 ~~lgv~V~igGvEAemAi~GALTTP-----Gt~~PlaIlDmG~GSTDAsii~~~g-~v~~iHlA----GAG~mVTmlI~s 175 (332)
T PF08841_consen 106 EELGVPVEIGGVEAEMAILGALTTP-----GTDKPLAILDMGGGSTDASIINRDG-EVTAIHLA----GAGNMVTMLINS 175 (332)
T ss_dssp HHHTSEEEEECEHHHHHHHHHTTST-----T--SSEEEEEE-SSEEEEEEE-TTS--EEEEEEE-----SHHHHHHHHHH
T ss_pred HHHCCceEEccccHHHHHhcccCCC-----CCCCCeEEEecCCCcccHHHhCCCC-cEEEEEec----CCchhhHHHHHH
Confidence 4568888777789999998876543 3356699999999999999997653 33332222 246666665543
Q ss_pred HHHHHHhhhcccCccCChHHHHHHHHHHHHHhhhccCCCcccEEEe-------c--------------cccCc---ceEE
Q 004210 242 YFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANAEAPLNIE-------C--------------LMNEK---DVKG 297 (768)
Q Consensus 242 ~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~i~i~-------~--------------l~~~~---d~~~ 297 (768)
.| +++. +.-||.+|+-=-+.-+..+++. + +..+. .+..
T Consensus 176 EL--------Gl~d----------~~lAE~IKkyPlaKVEslfhiR~EDGtv~Ffd~pl~p~~faRvvi~~~~~lvPi~~ 237 (332)
T PF08841_consen 176 EL--------GLED----------RELAEDIKKYPLAKVESLFHIRHEDGTVQFFDEPLDPDVFARVVILKEDGLVPIPG 237 (332)
T ss_dssp HC--------T-S-----------HHHHHHHHHS-EEEEECTTEEEETTS-EEE-SS---CCCTTSEEEECTTEEEEESS
T ss_pred hh--------CCCC----------HHHHHHhhhcchhhhccceEEEecCCceEEecCCCChHHeeEEEEecCCceeecCC
Confidence 32 2211 1456666653211111111110 0 00000 1111
Q ss_pred EecHHHHHHHHHHHHHH-HHHHHHHHHHhc--CCCCCCcCEEEEecCCCChHHHHHHHHhhcC--------CCCCCcCCh
Q 004210 298 FIRREEFEKLSSSLLER-MRIPCQKALAGS--GLNVEKIHSVELVGSGSRIPAISRMLNSLFN--------REPGRTINA 366 (768)
Q Consensus 298 ~itr~~fe~~~~~~~~~-i~~~i~~~l~~~--~~~~~~i~~V~LvGG~srip~v~~~l~~~fg--------~~v~~~~n~ 366 (768)
.++-+.+..+=...=++ +..-.-++|++- .-+..+|+.|+|+|||+-=.-|-+++.+.+. -++.-..-|
T Consensus 238 ~~~lEkir~vRr~AK~kVFVtNa~RaL~~vsPtgniR~i~fVVlVGGSALDFEIp~~vtdaLs~y~iVaGRgNIrG~eGP 317 (332)
T PF08841_consen 238 DLSLEKIRSVRREAKEKVFVTNALRALKQVSPTGNIRDIPFVVLVGGSALDFEIPQMVTDALSHYGIVAGRGNIRGVEGP 317 (332)
T ss_dssp TS-HHHHHHHHHHHHHHHHHHHHHHHHCCCSTTSSCCC--EEEEESGGGGSSSHHHHHHHHHCTTT-EEEE--GGGTSTT
T ss_pred CccHHHHHHHHHHhhhhhhHHHHHHHHHhcCCCCCcccCceEEEecCchhhhhhHHHHHHHHhhCcceeeccccccccCc
Confidence 22223332222221111 222344556553 2345589999999999987666677766662 245666789
Q ss_pred hhHHHhHHHHHh
Q 004210 367 SECVARGCALQC 378 (768)
Q Consensus 367 ~eava~Gaa~~a 378 (768)
..|||.|.++.-
T Consensus 318 RNAVATGLvlsy 329 (332)
T PF08841_consen 318 RNAVATGLVLSY 329 (332)
T ss_dssp STHHHHHHHHHH
T ss_pred hHHHHHHHHHhh
Confidence 999999998643
No 65
>KOG0676 consensus Actin and related proteins [Cytoskeleton]
Probab=97.73 E-value=0.00032 Score=74.83 Aligned_cols=91 Identities=18% Similarity=0.152 Sum_probs=59.6
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHH-HHcCCcceEeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEE-EEEEEeeC
Q 004210 139 SNCVIGVPCYLTDVQRRAYLDAA-TIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQ-VCVASYEN 216 (768)
Q Consensus 139 ~~~VitVP~~~~~~qr~~l~~Aa-~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~d-vsv~~~~~ 216 (768)
..+++|-|+.+...-|+.+.+.. +.. ++-.+.-.. .|.+ |+..+ .+-+|+|+|.|-+. +-+++-
T Consensus 100 ~pvllte~pl~p~~nREk~tqi~FE~f--nvpa~yva~-qavl-ya~g~--------ttG~VvD~G~gvt~~vPI~eG-- 165 (372)
T KOG0676|consen 100 HPVLLTEPPLNPKANREKLTQIMFETF--NVPALYVAI-QAVL-YASGR--------TTGLVVDSGDGVTHVVPIYEG-- 165 (372)
T ss_pred CceEeecCCCCchHhHHHHHHHhhhhc--CccHhHHHH-HHHH-HHcCC--------eeEEEEEcCCCceeeeecccc--
Confidence 57999999999999998887654 333 433333222 3322 55432 46799999999765 444432
Q ss_pred CeEEEEEEeCCCCCchhhHHHHHHHHHHH
Q 004210 217 GHMKILSHAFDESLGGRDFDEVLSSYFAA 245 (768)
Q Consensus 217 ~~~~vl~~~~~~~lGG~~~d~~l~~~l~~ 245 (768)
+.+...-....+||++++..+...|.+
T Consensus 166 --~~lp~ai~~ldl~G~dlt~~l~~~L~~ 192 (372)
T KOG0676|consen 166 --YALPHAILRLDLAGRDLTDYLLKQLRK 192 (372)
T ss_pred --cccchhhheecccchhhHHHHHHHHHh
Confidence 223333446779999999987777765
No 66
>COG4457 SrfB Uncharacterized protein conserved in bacteria, putative virulence factor [Function unknown]
Probab=97.62 E-value=0.009 Score=66.29 Aligned_cols=50 Identities=24% Similarity=0.318 Sum_probs=39.6
Q ss_pred CcCEEEEecCCCChHHHHHHHHhhcCCCC--------------------CCcCChhhHHHhHHHHHhhHh
Q 004210 332 KIHSVELVGSGSRIPAISRMLNSLFNREP--------------------GRTINASECVARGCALQCAML 381 (768)
Q Consensus 332 ~i~~V~LvGG~srip~v~~~l~~~fg~~v--------------------~~~~n~~eava~Gaa~~a~~l 381 (768)
+.|.++|+|--+|+|.||..++.....++ .+-.||...+|.||-+++..+
T Consensus 778 ~cDVlLlTGRPsrlPgvqalfr~~~pvp~~rilpl~~Yrvg~WYPF~k~grIddPKtTAaVGAMLC~Lsl 847 (1014)
T COG4457 778 DCDVLLLTGRPSRLPGVQALFRHLQPVPVNRILPLDDYRVGTWYPFRKQGRIDDPKTTAAVGAMLCALSL 847 (1014)
T ss_pred cccEEEEcCCcccCccHHHHHhhcCCCCCCceEeccceeccceecccccCcCCCcchHHHHHHHHHHHHh
Confidence 56889999999999999999998875332 223389999999998776554
No 67
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=97.47 E-value=0.00088 Score=72.94 Aligned_cols=116 Identities=16% Similarity=0.147 Sum_probs=64.9
Q ss_pred ecHHHHHHHHHHHHHHHHHhhccCCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCcceEe---ccchHHHHHHhhhcccCC
Q 004210 113 FTPVQILGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDVQRRAYLDAATIAGLKPLRL---MHDCTATALGYGIYKTDF 189 (768)
Q Consensus 113 ~~~~el~a~~L~~l~~~a~~~~~~~~~~~VitVP~~~~~~qr~~l~~Aa~~AGl~~~~l---i~Ep~Aaal~y~~~~~~~ 189 (768)
+..+.+-..+.+..++.--.--...-.-+.||==+--.++.|..+..-+..||==++.- -.|..-|+-..|... +
T Consensus 60 ID~~al~~iv~~eY~~Agi~p~~I~TGAVIITGETArKeNA~~v~~~Ls~~aGDFVVATAGPdLEsiiAgkGsGA~~--~ 137 (473)
T PF06277_consen 60 IDAEALKEIVEEEYRKAGITPEDIDTGAVIITGETARKENAREVLHALSGFAGDFVVATAGPDLESIIAGKGSGAAA--L 137 (473)
T ss_pred cCHHHHHHHHHHHHHHcCCCHHHCccccEEEecchhhhhhHHHHHHHHHHhcCCEEEEccCCCHHHHHhccCccHHH--H
Confidence 55555555555444432100000111234555545555677777777777777433222 123333333222211 1
Q ss_pred CCCCCcEEEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCCchhhH
Q 004210 190 SNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDF 235 (768)
Q Consensus 190 ~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~ 235 (768)
.......|+=+|+||||+.+++++-. +++++. -.++||+.|
T Consensus 138 S~~~~~~V~NiDIGGGTtN~avf~~G----~v~~T~-cl~IGGRLi 178 (473)
T PF06277_consen 138 SKEHHTVVANIDIGGGTTNIAVFDNG----EVIDTA-CLDIGGRLI 178 (473)
T ss_pred hhhhCCeEEEEEeCCCceeEEEEECC----EEEEEE-EEeeccEEE
Confidence 12456789999999999999998755 566666 467999865
No 68
>KOG0797 consensus Actin-related protein [Cytoskeleton]
Probab=97.02 E-value=0.0057 Score=66.02 Aligned_cols=122 Identities=17% Similarity=0.234 Sum_probs=84.4
Q ss_pred eEecHHHHHHHHHHHHHHHHHhhccCCC-----CeEEEEeCCCCCHHHHHHHH-HHHHHcCCcceEeccchHHHHHHhhh
Q 004210 111 HKFTPVQILGMLLSNLKQITEKNIKIPI-----SNCVIGVPCYLTDVQRRAYL-DAATIAGLKPLRLMHDCTATALGYGI 184 (768)
Q Consensus 111 ~~~~~~el~a~~L~~l~~~a~~~~~~~~-----~~~VitVP~~~~~~qr~~l~-~Aa~~AGl~~~~li~Ep~Aaal~y~~ 184 (768)
..++..++++.+-+-+.-.....++.+. ..+|+-||-.|....-+.+. -.....||+...++-|..||.++.|+
T Consensus 195 ~y~Slq~l~~dlt~il~yaL~e~L~Ip~~kl~qy~aVlVVpD~f~r~hveefl~ilL~eL~F~~~~v~QESlaatfGaGl 274 (618)
T KOG0797|consen 195 PYYSLQRLCEDLTAILDYALLEKLHIPHKKLFQYHAVLVVPDTFDRRHVEEFLTILLGELGFNSAVVHQESLAATFGAGL 274 (618)
T ss_pred cchhHHHHHHHHHHHHHHHHHHhcCCChhHhcceeEEEEecchhhHHHHHHHHHHHHHHhccceEEEEhhhhHHHhcCCc
Confidence 3456666655544333333334444433 36899999999977755444 44567899999999999999987775
Q ss_pred cccCCCCCCCcEEEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCCchhhHHHHHHHHHHH
Q 004210 185 YKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEVLSSYFAA 245 (768)
Q Consensus 185 ~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~d~~l~~~l~~ 245 (768)
. .-.|||||+-+|.++.|+ +|. .+..+.--...||.||++.++-++.+
T Consensus 275 s----------s~CVVdiGAQkTsIaCVE--dGv-s~~ntri~L~YGGdDitr~f~~ll~r 322 (618)
T KOG0797|consen 275 S----------SACVVDIGAQKTSIACVE--DGV-SLPNTRIILPYGGDDITRCFLWLLRR 322 (618)
T ss_pred c----------ceeEEEccCcceeEEEee--cCc-cccCceEEeccCCchHHHHHHHHHHh
Confidence 3 468999999999999886 332 12223334568999999999876654
No 69
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=96.82 E-value=0.098 Score=57.86 Aligned_cols=216 Identities=14% Similarity=0.083 Sum_probs=120.6
Q ss_pred HHHHHHHHHcCCcc----eEeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEee---CC----eEEEEE
Q 004210 155 RAYLDAATIAGLKP----LRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYE---NG----HMKILS 223 (768)
Q Consensus 155 ~~l~~Aa~~AGl~~----~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~---~~----~~~vl~ 223 (768)
....++|+..||.. ..-+-+.-|.+++.+.- ..+-|++=+|-+||.+.+..-. .| ....+-
T Consensus 232 ~Lt~e~A~~lGL~~~~~Vs~g~IDAhag~~Gv~~~--------~~~~l~~I~GTStC~m~~s~~~~~v~GvwGpy~~ai~ 303 (544)
T COG1069 232 GLTPEAAQELGLPEGTVVSAGIIDAHAGAVGVGGA--------QPGSLAMIAGTSTCHMLLSEKPRFVPGVWGPYDGAVL 303 (544)
T ss_pred ccCHHHHHHhCCCCCcEEeccceeccccccccccC--------CCCeEEEEeccceEEEEecCCceecCccccccccccC
Confidence 45678899999873 22223334444433211 1234555578888888776533 11 112222
Q ss_pred EeCCCCCchhhHHHHHHHHHHHHHhhhcccCccCCh--------HHHHHHHHHHHHHhhhccCCCcccEEEeccccC---
Q 004210 224 HAFDESLGGRDFDEVLSSYFAAQFKQQYDIDVYTNV--------KASIRLRASCEKLKKVLSANAEAPLNIECLMNE--- 292 (768)
Q Consensus 224 ~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~--------~~~~rL~~~ae~~K~~Ls~~~~~~i~i~~l~~~--- 292 (768)
-++-..=||..-.-.|.+||.+....-.... ...+ ....++..-+++.+...+-... .+.++.+..+
T Consensus 304 Pg~~~~EgGQSatG~l~dhl~~~h~~~~e~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~-l~~l~~f~GNRsP 381 (544)
T COG1069 304 PGLWLYEGGQSATGDLLDHLVRTHPAPLEQL-AAHPKDGEEIYESLAQRLELLTEAAAAIPPLASG-LHVLDWFNGNRSP 381 (544)
T ss_pred cchhhhcccchhhhHHHHHHHHhCCcccchh-hccchhhhHHHHHHHHHHHHHHhhHhccCcccCC-cEecccccCCcCC
Confidence 2323345788888888888886531100000 0111 1234444444555554432211 1222222111
Q ss_pred ---cc-------eEEEecHHHHHHHHHHHHHHHH---HHHHHHHHhcCCCCCCcCEEEEecCCCChHHHHHHHHhhcCCC
Q 004210 293 ---KD-------VKGFIRREEFEKLSSSLLERMR---IPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNRE 359 (768)
Q Consensus 293 ---~d-------~~~~itr~~fe~~~~~~~~~i~---~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~fg~~ 359 (768)
.+ +++.-+.+.+-.+....+..+. ..|-+++++.|+. |+.|+.+||..+.|.+.+.+.+..|.+
T Consensus 382 ~aDp~l~G~i~GltL~T~~~~l~~lY~a~l~a~A~GtR~Iie~~~~~g~~---Id~l~~sGG~~KN~llmql~aDvtg~~ 458 (544)
T COG1069 382 LADPRLKGVITGLTLDTSPESLALLYRALLEATAFGTRAIIETFEDQGIA---IDTLFASGGIRKNPLLMQLYADVTGRP 458 (544)
T ss_pred CCCccceeEEeccccCCCcHHHHHHHHHHHHHHHHhHHHHHHHHHHcCCe---eeEEEecCCcccCHHHHHHHHHhcCCe
Confidence 11 2223334433344334443332 4455666677764 899999999999999999999999988
Q ss_pred CCCcCChhhHHHhHHHHHhhHhcCC
Q 004210 360 PGRTINASECVARGCALQCAMLSPQ 384 (768)
Q Consensus 360 v~~~~n~~eava~Gaa~~a~~ls~~ 384 (768)
+... -.++++++|+|+.|+.-.+.
T Consensus 459 v~i~-~s~~a~llGsAm~~avAag~ 482 (544)
T COG1069 459 VVIP-ASDQAVLLGAAMFAAVAAGV 482 (544)
T ss_pred EEee-cccchhhhHHHHHHHHHhcc
Confidence 7665 67899999999999876654
No 70
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=96.73 E-value=0.016 Score=59.38 Aligned_cols=88 Identities=20% Similarity=0.157 Sum_probs=46.8
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHHcCCcceEec---cchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEeeCC
Q 004210 141 CVIGVPCYLTDVQRRAYLDAATIAGLKPLRLM---HDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENG 217 (768)
Q Consensus 141 ~VitVP~~~~~~qr~~l~~Aa~~AGl~~~~li---~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~ 217 (768)
+.||=-.--..+.|.++......||==++.-- .|..-|.-..|. ..+..+....++-+|+||||+..|++.-.
T Consensus 90 vIITGEtArk~NA~~vl~alSg~aGDFVVAtAGPdLESiIAGkGaGA--~t~Seqr~t~v~NlDIGGGTtN~slFD~G-- 165 (473)
T COG4819 90 VIITGETARKRNARPVLMALSGSAGDFVVATAGPDLESIIAGKGAGA--QTLSEQRLTRVLNLDIGGGTTNYSLFDAG-- 165 (473)
T ss_pred EEEeccccccccchHHHHHhhhcccceEEEecCCCHHHHhccCCccc--cchhhhhceEEEEEeccCCccceeeeccc--
Confidence 44554444445556666555555553222211 122222222111 11122446789999999999999997644
Q ss_pred eEEEEEEeCCCCCchhhH
Q 004210 218 HMKILSHAFDESLGGRDF 235 (768)
Q Consensus 218 ~~~vl~~~~~~~lGG~~~ 235 (768)
++..+. -..+||+-+
T Consensus 166 --kv~dTa-CLdiGGRLi 180 (473)
T COG4819 166 --KVSDTA-CLDIGGRLI 180 (473)
T ss_pred --ccccce-eeecCcEEE
Confidence 344444 356888754
No 71
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=96.72 E-value=0.0019 Score=64.11 Aligned_cols=72 Identities=25% Similarity=0.402 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc----CCCCCCcCEEEEecCCCChHHHHHHHHhhcCCCCCCcCChhhHHHhHHHHHhhH
Q 004210 305 EKLSSSLLERMRIPCQKALAGS----GLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQCAM 380 (768)
Q Consensus 305 e~~~~~~~~~i~~~i~~~l~~~----~~~~~~i~~V~LvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~Gaa~~a~~ 380 (768)
.+++..+++.+.-.++..++.. +. .++.|+++||+++.|.+.+++.+.||.++....+ .++.|.|||+.|+.
T Consensus 121 ~~~~rAv~Egia~~~~~~~~~l~~~~~~---~~~~i~~~GG~~~n~~~~q~~Advl~~~V~~~~~-~e~~a~GaA~~A~~ 196 (198)
T PF02782_consen 121 ADLARAVLEGIAFSLRQILEELEELTGI---PIRRIRVSGGGAKNPLWMQILADVLGRPVVRPEV-EEASALGAALLAAV 196 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTS---CESEEEEESGGGGSHHHHHHHHHHHTSEEEEESS-STHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHhhhhccccccc---cceeeEeccccccChHHHHHHHHHhCCceEeCCC-CchHHHHHHHHHHh
Confidence 3344444444444444444332 43 4899999999999999999999999988866655 88999999999874
No 72
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=96.64 E-value=0.39 Score=50.12 Aligned_cols=70 Identities=16% Similarity=0.105 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCcCEEEEecCCCChHHHHHHHHhhcC-----CCCCCcCChhhHHHhHHHHHh
Q 004210 306 KLSSSLLERMRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFN-----REPGRTINASECVARGCALQC 378 (768)
Q Consensus 306 ~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~fg-----~~v~~~~n~~eava~Gaa~~a 378 (768)
+++....+.+...+..++.+.+..... |+|+||..+...+.+.+.+.+. .++.....|....+.||+++|
T Consensus 197 ~Il~~a~~~la~~i~~~~~~~~~~~~~---v~l~GGv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~a~GAallA 271 (271)
T PF01869_consen 197 DILAEAADELAELIKAVLKRLGPEKEP---VVLSGGVFKNSPLVKALRDALKEKLPKVPIIIPVEPQYDPAYGAALLA 271 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTCCCCS---EEEESGGGGCHHHHHHHGGGS-HHHHCCTCECECCGSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCe---EEEECCccCchHHHHHHHHHHHHhcCCCceEECCCCCccHHHHHHHhC
Confidence 445555566666667777665543222 9999999999878777766553 345677889999999999876
No 73
>PLN02669 xylulokinase
Probab=96.05 E-value=0.016 Score=66.94 Aligned_cols=77 Identities=14% Similarity=0.180 Sum_probs=54.6
Q ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCEEEEecCCCChHHHHHHHHhhcCCCCCCcCChhhHHHhHHHHHh
Q 004210 299 IRREEFEKLSSSLLERMRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQC 378 (768)
Q Consensus 299 itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~Gaa~~a 378 (768)
.+|.++ +..+++.+.-.++..++..+.. ..++.|+++||+|+.+.+.+.+.++||.++.....+ ++.|+|||+.|
T Consensus 416 ~~~~~~---~RAvlEg~a~~~r~~~~~l~~~-~~~~~i~~~GGgs~s~~w~Qi~ADVlg~pV~~~~~~-ea~alGAA~~A 490 (556)
T PLN02669 416 FDPPSE---VRAIIEGQFLSMRAHAERFGMP-VPPKRIIATGGASANQSILKLIASIFGCDVYTVQRP-DSASLGAALRA 490 (556)
T ss_pred CCHHHH---HHHHHHHHHHHHHHHHHHHhCC-CCCcEEEEEcChhcCHHHHHHHHHHcCCCeEecCCC-CchHHHHHHHH
Confidence 355553 3444444444444444443332 357899999999999999999999999888655554 78899999999
Q ss_pred hH
Q 004210 379 AM 380 (768)
Q Consensus 379 ~~ 380 (768)
+.
T Consensus 491 ~~ 492 (556)
T PLN02669 491 AH 492 (556)
T ss_pred HH
Confidence 75
No 74
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=96.04 E-value=0.018 Score=66.45 Aligned_cols=83 Identities=14% Similarity=0.163 Sum_probs=62.5
Q ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCCCCcCEEEEecCCCChHHHHHHHHhhcCCCCCCcCChhhHHHhHH
Q 004210 298 FIRREEFEKLSSSLLERMRIPCQKALAG---SGLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGC 374 (768)
Q Consensus 298 ~itr~~fe~~~~~~~~~i~~~i~~~l~~---~~~~~~~i~~V~LvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~Ga 374 (768)
.-+|..+..++..+++.+.-.++.+++. .+. .++.|.++||+++.+.+.+.+.+.+|.++....+ .|+.++||
T Consensus 409 ~~~~~~~~~~~rAvlEgiaf~~r~~~e~l~~~g~---~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~~-~e~~alGa 484 (541)
T TIGR01315 409 DRSKDGLALLYYATMEFIAYGTRQIVEAMNTAGH---TIKSIFMSGGQCQNPLLMQLIADACDMPVLIPYV-NEAVLHGA 484 (541)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---CccEEEEecCcccCHHHHHHHHHHHCCeeEecCh-hHHHHHHH
Confidence 4467666666776666666555554443 343 4788999999999999999999999998866655 55889999
Q ss_pred HHHhhHhcCC
Q 004210 375 ALQCAMLSPQ 384 (768)
Q Consensus 375 a~~a~~ls~~ 384 (768)
|+.|+.-.+.
T Consensus 485 A~lA~~~~G~ 494 (541)
T TIGR01315 485 AMLGAKAAGT 494 (541)
T ss_pred HHHHHHhcCc
Confidence 9999866554
No 75
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=95.77 E-value=0.021 Score=51.53 Aligned_cols=48 Identities=29% Similarity=0.444 Sum_probs=28.3
Q ss_pred EEEEEeCCceEEEEEEEee-CCeEEEEEEeCCCCCc--hhhHH--HHHHHHHH
Q 004210 197 VVFVDIGHCDTQVCVASYE-NGHMKILSHAFDESLG--GRDFD--EVLSSYFA 244 (768)
Q Consensus 197 vlv~D~GggT~dvsv~~~~-~~~~~vl~~~~~~~lG--G~~~d--~~l~~~l~ 244 (768)
++++|+|++++.+.+++.. .+.+.++..+.....| |..|. ..+..-+.
T Consensus 1 i~~iDiGs~~~~~~i~~~~~~~~~~vl~~g~~~s~gi~~g~Itd~~~i~~~i~ 53 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDGSDGYIRVLGVGEVPSKGIKGGHITDIEDISKAIK 53 (120)
T ss_dssp EEEEEE-SSSEEEEEEETTEEEEEEEES----------HHHHH--HHHHHHHT
T ss_pred CEEEEcCCCcEEEEEEEeCCCCcEEEEEEecccccccCCCEEEEHHHHHHHHH
Confidence 6899999999999999873 3455555544222222 66777 66665553
No 76
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=95.55 E-value=0.045 Score=63.26 Aligned_cols=83 Identities=13% Similarity=0.085 Sum_probs=58.7
Q ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCEEEEecCC-CChHHHHHHHHhhcCCCCCCcCChhhHHHhHHHH
Q 004210 298 FIRREEFEKLSSSLLERMRIPCQKALAGSGLNVEKIHSVELVGSG-SRIPAISRMLNSLFNREPGRTINASECVARGCAL 376 (768)
Q Consensus 298 ~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~-srip~v~~~l~~~fg~~v~~~~n~~eava~Gaa~ 376 (768)
.-+|.+|-..+-+-+---...+-+.|++.|. .++.|.++||+ ++.+.+.+.+.+.||.+|....++ |+.|+|||+
T Consensus 404 ~~~~~~~~RAvlEgia~~~~~~l~~l~~~g~---~~~~i~~~GGg~a~s~~w~Qi~Adv~g~pV~~~~~~-e~~a~GaA~ 479 (536)
T TIGR01234 404 ATDAPLLYRALIEATAFGTRMIMETFTDSGV---PVEELMAAGGIARKNPVIMQIYADVTNRPLQIVASD-QAPALGAAI 479 (536)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CcceEEEeCCccccCHHHHHHHHHhhCCeeEeccCC-cchhHHHHH
Confidence 3456665554443333222333344444444 47889999999 999999999999999988666654 688999999
Q ss_pred HhhHhcCC
Q 004210 377 QCAMLSPQ 384 (768)
Q Consensus 377 ~a~~ls~~ 384 (768)
.|+.-.+.
T Consensus 480 lA~~~~G~ 487 (536)
T TIGR01234 480 FAAVAAGV 487 (536)
T ss_pred HHHHHcCC
Confidence 99876554
No 77
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=95.50 E-value=0.4 Score=52.66 Aligned_cols=59 Identities=15% Similarity=0.190 Sum_probs=40.9
Q ss_pred ceEEEecHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCEEEEecCCCChHHHHHHHH
Q 004210 294 DVKGFIRREEFEKLSSSLLERMRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLN 353 (768)
Q Consensus 294 d~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~ 353 (768)
.-.+.||..++.++.. --..+..-++-.|+++|++.+||+.|+|.||++.-=-+++.+.
T Consensus 290 ~~~i~itq~DIr~~ql-AKaAi~aGi~~Ll~~agi~~~di~~v~lAG~FG~~l~~~~a~~ 348 (412)
T PF14574_consen 290 GDDIYITQKDIREFQL-AKAAIRAGIEILLEEAGISPEDIDRVYLAGGFGNYLDPESAIR 348 (412)
T ss_dssp SS-EEEEHHHHHHHHH-HHHHHHHHHHHHHHHTT--GGG--EEEEECSS-SEEEHHHHHH
T ss_pred CCCEEEeHHHHHHHHH-HHHHHHHHHHHHHHHcCCCHHHccEEEEeCcccccCCHHHHhh
Confidence 4456899999876532 2334566678889999999999999999999998777777765
No 78
>KOG0680 consensus Actin-related protein - Arp6p [Cytoskeleton]
Probab=95.48 E-value=0.49 Score=48.76 Aligned_cols=102 Identities=14% Similarity=0.164 Sum_probs=58.1
Q ss_pred CCeEEEEeCCCCCHH-HHHHHHHHHHHcCCcceEeccchHHHHHHhh---hcccCCCCCCCcEEEEEEeCCceEEEEEEE
Q 004210 138 ISNCVIGVPCYLTDV-QRRAYLDAATIAGLKPLRLMHDCTATALGYG---IYKTDFSNVGPTYVVFVDIGHCDTQVCVAS 213 (768)
Q Consensus 138 ~~~~VitVP~~~~~~-qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~---~~~~~~~~~~~~~vlv~D~GggT~dvsv~~ 213 (768)
-..+|+|=|.+--+. |.....-..+.-++.- +..-+.|+.+++. ....+.......+.||+|-|.+-|-+.-+-
T Consensus 93 ~~~ivlTep~~~~psi~~~t~eilFEey~fd~--v~kttaa~lva~~~~~~~ne~~tt~~~~c~lVIDsGysfThIip~v 170 (400)
T KOG0680|consen 93 DHNIVLTEPCMTFPSIQEHTDEILFEEYQFDA--VLKTTAAVLVAFTKYVRNNEDSTTTSSECCLVIDSGYSFTHIIPVV 170 (400)
T ss_pred cceEEEecccccccchhhhHHHHHHHHhccce--EeecCHHHhcchhhhccCCccccccccceEEEEeCCCceEEEehhh
Confidence 457899999765543 4444444445566653 3333344433433 211111123466899999999977654332
Q ss_pred eeCCeEEEEEEeCCCCCchhhHHHHHHHHHH
Q 004210 214 YENGHMKILSHAFDESLGGRDFDEVLSSYFA 244 (768)
Q Consensus 214 ~~~~~~~vl~~~~~~~lGG~~~d~~l~~~l~ 244 (768)
.|.....+.. ...+||..++..|.+++-
T Consensus 171 --~g~~~~qaV~-RiDvGGK~LTn~LKE~iS 198 (400)
T KOG0680|consen 171 --KGIPYYQAVK-RIDVGGKALTNLLKETIS 198 (400)
T ss_pred --cCcchhhceE-EeecchHHHHHHHHHHhh
Confidence 2322222222 457999999999888764
No 79
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=95.47 E-value=0.37 Score=51.59 Aligned_cols=45 Identities=22% Similarity=0.217 Sum_probs=31.0
Q ss_pred HcCCcceEeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEE
Q 004210 163 IAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVA 212 (768)
Q Consensus 163 ~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~ 212 (768)
..|++ +.+.|+..|+|++-.+.... ....+++++.+|.|- -.+++
T Consensus 96 ~~~~p-v~v~NDa~~~alaE~~~g~~---~~~~~~~~v~igtGi-G~giv 140 (318)
T TIGR00744 96 RVGLP-VVVENDANAAALGEYKKGAG---KGARDVICITLGTGL-GGGII 140 (318)
T ss_pred HHCCC-EEEechHHHHHHHHHHhccc---CCCCcEEEEEeCCcc-EEEEE
Confidence 34775 58999999999876544321 234678999999875 55554
No 80
>PRK00047 glpK glycerol kinase; Provisional
Probab=95.44 E-value=0.035 Score=63.56 Aligned_cols=52 Identities=12% Similarity=0.183 Sum_probs=44.3
Q ss_pred CcCEEEEecCCCChHHHHHHHHhhcCCCCCCcCChhhHHHhHHHHHhhHhcCC
Q 004210 332 KIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQCAMLSPQ 384 (768)
Q Consensus 332 ~i~~V~LvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~Gaa~~a~~ls~~ 384 (768)
.++.|.++||+++.+.+.+++.+.||.++.... ..|+.++|||+.|+.-.+.
T Consensus 403 ~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~-~~e~~a~GaA~~A~~~~G~ 454 (498)
T PRK00047 403 RLKELRVDGGAVANNFLMQFQADILGVPVERPV-VAETTALGAAYLAGLAVGF 454 (498)
T ss_pred CCceEEEecCcccCHHHHHHHHHhhCCeeEecC-cccchHHHHHHHHhhhcCc
Confidence 378899999999999999999999999885544 5578899999999866554
No 81
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=95.44 E-value=0.17 Score=52.51 Aligned_cols=153 Identities=15% Similarity=0.099 Sum_probs=86.5
Q ss_pred CcEEEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCCchhhHHHHHHHHHHHHHhhhcccCccCChHHHHHHHHHHHHHh
Q 004210 194 PTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEVLSSYFAAQFKQQYDIDVYTNVKASIRLRASCEKLK 273 (768)
Q Consensus 194 ~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K 273 (768)
...++++++|.| +|++.+.+. +....+ +..+||-.|= -|+..+... .+ ...|.+.|.+-
T Consensus 100 ~~p~llvnIGsG---vSi~~v~~~--~~~Rv~-Gt~iGGGTf~-GL~~LL~~~----------~~---~~el~~lA~~G- 158 (279)
T TIGR00555 100 IYPYLLVNIGTG---TSILYVDGD--NYERVG-GTSLGGGTFL-GLGKLLTGI----------QT---FDELLEMAQHG- 158 (279)
T ss_pred CCceEEEEecCC---eEEEEEcCc--cEEEEc-CccccHHHHH-HHHHHHcCC----------CC---HHHHHHHHHcC-
Confidence 456899999877 667777654 334444 4567776665 777666510 11 12222222211
Q ss_pred hhccCCCcccEEEeccccCc--------c-------------eEEEecHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCCC
Q 004210 274 KVLSANAEAPLNIECLMNEK--------D-------------VKGFIRREEFEKLSSSLLERMRIPCQKALA-GSGLNVE 331 (768)
Q Consensus 274 ~~Ls~~~~~~i~i~~l~~~~--------d-------------~~~~itr~~fe~~~~~~~~~i~~~i~~~l~-~~~~~~~ 331 (768)
.+...++.|..+|.+. | ..-.+++ |+++..++.-+...|-..-. .+. ..
T Consensus 159 ----~~~~vDl~V~dIYg~~y~~~~L~~d~iASsfGkv~~~~~~~~~~~---eDiAaSLl~mV~~nIg~lA~~~a~--~~ 229 (279)
T TIGR00555 159 ----DRTNVDLLVGDIYGGDYSESGLDGSLTASSFGKVLSKHLDQSFSP---EDIAASLLGLIGNNIGQIAYLCAL--RY 229 (279)
T ss_pred ----CCcccccccccccCCCCCCCCCCcceeeeccchhhccccccCCCH---HHHHHHHHHHHHHHHHHHHHHHHH--Hc
Confidence 1222333344444310 0 0011233 34445555544443322111 111 22
Q ss_pred CcCEEEEecC-CCChHHHHHHHHhhcC---CCCCCcCChhhHHHhHHHH
Q 004210 332 KIHSVELVGS-GSRIPAISRMLNSLFN---REPGRTINASECVARGCAL 376 (768)
Q Consensus 332 ~i~~V~LvGG-~srip~v~~~l~~~fg---~~v~~~~n~~eava~Gaa~ 376 (768)
.+..|+++|| .+..|.+++.+...+. .++..+.|....+|+||++
T Consensus 230 ~~~~IvF~Gg~L~~~~~l~~~~~~~~~~~~~~~ifp~h~~y~gAlGAaL 278 (279)
T TIGR00555 230 NIDRIVFIGSFLRNNQLLMKVLSYATNFWSKKALFLEHEGYSGAIGALL 278 (279)
T ss_pred CCCeEEEECCcccCCHHHHHHHHHHHhhcCceEEEECCcchHHHhhhcc
Confidence 5778999999 7779999999998874 5677888999999999985
No 82
>KOG0677 consensus Actin-related protein Arp2/3 complex, subunit Arp2 [Cytoskeleton]
Probab=95.39 E-value=0.18 Score=50.04 Aligned_cols=194 Identities=16% Similarity=0.187 Sum_probs=110.1
Q ss_pred CCCeEEEEeCCCCCHHHHHHHHHH-HHHcCCcceEeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEee
Q 004210 137 PISNCVIGVPCYLTDVQRRAYLDA-ATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYE 215 (768)
Q Consensus 137 ~~~~~VitVP~~~~~~qr~~l~~A-a~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~ 215 (768)
....+.+|-|+--....|+.|.+. .+.-||.-+.+-- .|+..-|+.-. ..-+|+|-|.|-|-++-+.-.
T Consensus 100 ~~~KiLLTePPmNP~kNREKm~evMFEkY~F~gvyvai--QAVLtLYAQGL--------~tGvVvDSGDGVTHi~PVye~ 169 (389)
T KOG0677|consen 100 TNCKILLTEPPMNPTKNREKMIEVMFEKYGFGGVYVAI--QAVLTLYAQGL--------LTGVVVDSGDGVTHIVPVYEG 169 (389)
T ss_pred ccCeEEeeCCCCCccccHHHHHHHHHHHcCCCeEEehH--HHHHHHHHhcc--------cceEEEecCCCeeEEeeeecc
Confidence 345788899998888888877665 4677888655543 33333344321 235899999999887765321
Q ss_pred CCeEEEEEE-eCCCCCchhhHHHHHHHHHHHHHhhhcccCccCChHHHHHHHHHHHHHhhhccCC-----------Cccc
Q 004210 216 NGHMKILSH-AFDESLGGRDFDEVLSSYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSAN-----------AEAP 283 (768)
Q Consensus 216 ~~~~~vl~~-~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~-----------~~~~ 283 (768)
+ ++.. .....+.|+++++-|.+.+..+ -|..+-+.+ ++.....|+.|+.- -+++
T Consensus 170 ---~-~l~HLtrRldvAGRdiTryLi~LLl~r---GYafN~tAD-------FETVR~iKEKLCYisYd~e~e~kLalETT 235 (389)
T KOG0677|consen 170 ---F-VLPHLTRRLDVAGRDITRYLIKLLLRR---GYAFNHTAD-------FETVREIKEKLCYISYDLELEQKLALETT 235 (389)
T ss_pred ---e-ehhhhhhhccccchhHHHHHHHHHHhh---ccccccccc-------hHHHHHHHhhheeEeechhhhhHhhhhhe
Confidence 1 1111 2345689999999999988753 122211111 13344455555321 1122
Q ss_pred EEEec--cccCcceEEEecHHHHH---HHHHHHH-----HHHHHHHHHHHHhcCCCC--CCcCEEEEecCCCChHHHHHH
Q 004210 284 LNIEC--LMNEKDVKGFIRREEFE---KLSSSLL-----ERMRIPCQKALAGSGLNV--EKIHSVELVGSGSRIPAISRM 351 (768)
Q Consensus 284 i~i~~--l~~~~d~~~~itr~~fe---~~~~~~~-----~~i~~~i~~~l~~~~~~~--~~i~~V~LvGG~srip~v~~~ 351 (768)
+-+++ +.+|. .+++--+.|| .+++|.+ ..+.+++-.+++.+.+.. +--.+|+|.||++.-|++-..
T Consensus 236 vLv~~YtLPDGR--vIkvG~ERFeAPE~LFqP~Li~VE~~G~aellF~~iQaaDiD~R~~lYkhIVLSGGstMYPGLPSR 313 (389)
T KOG0677|consen 236 VLVESYTLPDGR--VIKVGGERFEAPEALFQPHLINVEGPGVAELLFNTIQAADIDIRSELYKHIVLSGGSTMYPGLPSR 313 (389)
T ss_pred eeeeeeecCCCc--EEEecceeccCchhhcCcceeccCCCcHHHHHHHHHHHhccchHHHHHhHeeecCCcccCCCCcHH
Confidence 22332 22332 3455556664 3444422 123444555555554321 123689999999999988777
Q ss_pred HHhhc
Q 004210 352 LNSLF 356 (768)
Q Consensus 352 l~~~f 356 (768)
|++.+
T Consensus 314 LEkEl 318 (389)
T KOG0677|consen 314 LEKEL 318 (389)
T ss_pred HHHHH
Confidence 76554
No 83
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=95.37 E-value=0.042 Score=62.68 Aligned_cols=52 Identities=29% Similarity=0.413 Sum_probs=45.1
Q ss_pred CcCEEEEecCCCChHHHHHHHHhhcCCCCCCcCChhhHHHhHHHHHhhHhcCC
Q 004210 332 KIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQCAMLSPQ 384 (768)
Q Consensus 332 ~i~~V~LvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~Gaa~~a~~ls~~ 384 (768)
.++.|.++||+++.+.+.+++.+.||.++.... ..++.++|||+.|+.-.+.
T Consensus 390 ~~~~i~~~GG~s~s~~~~Q~~Adv~g~pv~~~~-~~e~~a~GaA~~a~~~~g~ 441 (481)
T TIGR01312 390 PIQSIRLIGGGAKSPAWRQMLADIFGTPVDVPE-GEEGPALGAAILAAWALGE 441 (481)
T ss_pred CcceEEEeccccCCHHHHHHHHHHhCCceeecC-CCcchHHHHHHHHHHhcCC
Confidence 478999999999999999999999998886554 6668899999999876654
No 84
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=95.35 E-value=0.16 Score=53.53 Aligned_cols=105 Identities=19% Similarity=0.232 Sum_probs=70.8
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHhHhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 004210 604 SFATESEREGISRNLRDTEEWLYEDGDDESENVYAERLEDLKKLVDPIEGRYKDEEARAQATGALLKCAMDYRKVVEAHS 683 (768)
Q Consensus 604 ~~~t~~e~~~l~~~l~~~~~WL~~~g~~a~~~~~~~kl~~L~~~~~pi~~R~~e~~~rp~a~~~l~~~l~~~~~~~~~~~ 683 (768)
..+|++ .|..++++++.+-.+|. .+..|...+.+...-.=+|++.+..-.++. ..
T Consensus 538 ~rLt~E---dIerMv~eAekFAeeDk--------------------~~KekieaRN~LE~YayslKnqi~dkekLg--~K 592 (663)
T KOG0100|consen 538 GRLTPE---DIERMVNEAEKFAEEDK--------------------KLKEKIEARNELESYAYSLKNQIGDKEKLG--GK 592 (663)
T ss_pred CCCCHH---HHHHHHHHHHHHhhhhH--------------------HHHHHHHhHHHHHHHHHHhhhccCchhHhc--cc
Confidence 455664 45566778888776652 111222222333333334555555555555 66
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccHHHHHHHHHHHHHHhhhhc-CCCC
Q 004210 684 LPSKVRDAVIDECSKAEEWLREKVTQQDSLPKDADPILWSTEIKRKSEALDLTCKCIM-RSNP 745 (768)
Q Consensus 684 ~~~ee~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~~~i~-kpkP 745 (768)
+++++++.+.+.+++...||++. +--..+|...|.++|+..|+||. |-.-
T Consensus 593 l~~edKe~~e~av~e~~eWL~~n------------~~a~~Ee~~ek~kele~vv~PiisklY~ 643 (663)
T KOG0100|consen 593 LSDEDKETIEDAVEEALEWLESN------------QDASKEEFKEKKKELEAVVQPIISKLYG 643 (663)
T ss_pred CChhHHHHHHHHHHHHHHHHhhc------------ccccHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999883 33345899999999999999999 5443
No 85
>PLN02295 glycerol kinase
Probab=95.35 E-value=0.059 Score=61.90 Aligned_cols=52 Identities=13% Similarity=0.144 Sum_probs=44.3
Q ss_pred CcCEEEEecCCCChHHHHHHHHhhcCCCCCCcCChhhHHHhHHHHHhhHhcCC
Q 004210 332 KIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQCAMLSPQ 384 (768)
Q Consensus 332 ~i~~V~LvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~Gaa~~a~~ls~~ 384 (768)
.++.|.++||+++.|.+.+++.+.||.++... +..|+.|+|||+.|+.-.+.
T Consensus 412 ~~~~i~~~GGga~s~~w~Qi~ADv~g~pV~~~-~~~e~~alGaA~~A~~~~G~ 463 (512)
T PLN02295 412 GLFLLRVDGGATANNLLMQIQADLLGSPVVRP-ADIETTALGAAYAAGLAVGL 463 (512)
T ss_pred CcceEEEeccchhCHHHHHHHHHhcCCceEec-CccccHHHHHHHHHHhhcCc
Confidence 47889999999999999999999999988544 44578899999999866554
No 86
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=95.32 E-value=0.035 Score=63.48 Aligned_cols=52 Identities=13% Similarity=0.164 Sum_probs=44.4
Q ss_pred CcCEEEEecCCCChHHHHHHHHhhcCCCCCCcCChhhHHHhHHHHHhhHhcCC
Q 004210 332 KIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQCAMLSPQ 384 (768)
Q Consensus 332 ~i~~V~LvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~Gaa~~a~~ls~~ 384 (768)
.++.|.++||+++.+.+.+++.+.||.++... +..|+.|+|||+.|+.-.+.
T Consensus 399 ~~~~i~~~GGga~s~~w~Qi~ADv~g~pv~~~-~~~e~~alGaA~~a~~~~G~ 450 (493)
T TIGR01311 399 EITKLRVDGGMTNNNLLMQFQADILGVPVVRP-KVTETTALGAAYAAGLAVGY 450 (493)
T ss_pred CCceEEEecccccCHHHHHHHHHhcCCeeEec-CCCcchHHHHHHHHHhhcCc
Confidence 47889999999999999999999999988654 44678899999999866554
No 87
>PRK09604 UGMP family protein; Validated
Probab=95.18 E-value=4.1 Score=43.89 Aligned_cols=61 Identities=13% Similarity=0.075 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhcCCCCCCcCEEEEecCCCChHHHHHHHHhhc---CCCCCCcC---ChhhHHHhHHHHHhhH
Q 004210 315 MRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLF---NREPGRTI---NASECVARGCALQCAM 380 (768)
Q Consensus 315 i~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~f---g~~v~~~~---n~~eava~Gaa~~a~~ 380 (768)
+...++++++.. +++.|+|.||.+....+++.|.+.+ |.++..+. -.|.++++|+|-+-..
T Consensus 242 l~~~~~~~~~~~-----~~~~lvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~~p~~D~gisIg~ag~~~~ 308 (332)
T PRK09604 242 LVIKTKRALKQT-----GVKTLVVAGGVAANSGLRERLAELAKKRGIEVFIPPLKLCTDNAAMIAAAGYERL 308 (332)
T ss_pred HHHHHHHHHHHh-----CCCeEEEcChHHHHHHHHHHHHHHHHHCCCEEECCCCCCCcHHHHHHHHHHHHHH
Confidence 334445555443 4678999999999999999999888 54444433 3489999999844433
No 88
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=95.17 E-value=0.078 Score=59.96 Aligned_cols=83 Identities=16% Similarity=0.054 Sum_probs=56.7
Q ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCcCEEEEecCCCChHHHHHHHHhhcCCCCCCcCChhhHHHhHHHH
Q 004210 298 FIRREEFEKLSSSLLERMRIPCQKALAGS-GLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCAL 376 (768)
Q Consensus 298 ~itr~~fe~~~~~~~~~i~~~i~~~l~~~-~~~~~~i~~V~LvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~Gaa~ 376 (768)
.-+|.++-..+-+-+.-....+-+.|++. +. .++.|.++||+++.+.+.+.+.+.+|.++... . .|+.++|||+
T Consensus 355 ~~~~~~l~RAv~Egva~~~r~~~e~l~~~~~~---~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~-~-~e~~a~GaA~ 429 (454)
T TIGR02627 355 PESDAELARCIFDSLALLYRQVLLELAELRGK---PISQLHIVGGGSQNAFLNQLCADACGIRVIAG-P-VEASTLGNIG 429 (454)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCC---CcCEEEEECChhhhHHHHHHHHHHhCCceEcC-C-chHHHHHHHH
Confidence 34666655444333222223333344432 33 47889999999999999999999999988543 3 6789999999
Q ss_pred HhhHhcCCc
Q 004210 377 QCAMLSPQY 385 (768)
Q Consensus 377 ~a~~ls~~~ 385 (768)
.|+.-.+.+
T Consensus 430 ~a~~~~G~~ 438 (454)
T TIGR02627 430 VQLMALDEI 438 (454)
T ss_pred HHHHhcCCc
Confidence 998765543
No 89
>PRK04123 ribulokinase; Provisional
Probab=95.14 E-value=0.044 Score=63.56 Aligned_cols=78 Identities=17% Similarity=0.294 Sum_probs=54.7
Q ss_pred cHHHHHHHHHHHHHHHHHHH---HHHHHhcCCCCCCcCEEEEecCC-CChHHHHHHHHhhcCCCCCCcCChhhHHHhHHH
Q 004210 300 RREEFEKLSSSLLERMRIPC---QKALAGSGLNVEKIHSVELVGSG-SRIPAISRMLNSLFNREPGRTINASECVARGCA 375 (768)
Q Consensus 300 tr~~fe~~~~~~~~~i~~~i---~~~l~~~~~~~~~i~~V~LvGG~-srip~v~~~l~~~fg~~v~~~~n~~eava~Gaa 375 (768)
+|.++- ..+++.+.-.+ -+.|++.+. .++.|.++||+ ++.+.+.+++.+.||.++...- ..|+.++|||
T Consensus 409 ~~~~l~---RAvlEgia~~~~~~~e~l~~~g~---~~~~i~~~GGg~s~s~~w~Qi~ADv~g~pV~~~~-~~e~~alGaA 481 (548)
T PRK04123 409 DAPDIY---RALIEATAFGTRAIMECFEDQGV---PVEEVIAAGGIARKNPVLMQIYADVLNRPIQVVA-SDQCPALGAA 481 (548)
T ss_pred CHHHHH---HHHHHHHHHHHHHHHHHHHHcCC---CcceEEEeCCCcccCHHHHHHHHHhcCCceEecC-ccccchHHHH
Confidence 555543 33333333332 334444443 47889999999 9999999999999998885554 4678899999
Q ss_pred HHhhHhcCC
Q 004210 376 LQCAMLSPQ 384 (768)
Q Consensus 376 ~~a~~ls~~ 384 (768)
+.|+.-.+.
T Consensus 482 ~lA~~~~G~ 490 (548)
T PRK04123 482 IFAAVAAGA 490 (548)
T ss_pred HHHHHHhcc
Confidence 999865543
No 90
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=95.11 E-value=0.052 Score=62.21 Aligned_cols=51 Identities=14% Similarity=0.177 Sum_probs=44.0
Q ss_pred cCEEEEecCCCChHHHHHHHHhhcCCCCCCcCChhhHHHhHHHHHhhHhcCC
Q 004210 333 IHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQCAMLSPQ 384 (768)
Q Consensus 333 i~~V~LvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~Gaa~~a~~ls~~ 384 (768)
++.|.++||+++.+.+.+++.+.||.++.... ..|+.++|||+.|+.-.+.
T Consensus 407 ~~~i~~~GG~a~s~~w~Qi~Adv~g~pV~~~~-~~e~~alGaAl~aa~a~G~ 457 (504)
T PTZ00294 407 LNSLRVDGGLTKNKLLMQFQADILGKDIVVPE-MAETTALGAALLAGLAVGV 457 (504)
T ss_pred cceEEEecccccCHHHHHHHHHHhCCceEecC-cccchHHHHHHHHHhhcCc
Confidence 78899999999999999999999999886555 5557899999999866554
No 91
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=95.11 E-value=0.24 Score=55.17 Aligned_cols=70 Identities=17% Similarity=0.209 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCcCEEEEecCCCChHHHHHHHHhhcCCCCCCcCChhhHHHhHHHHHhhHhcCC
Q 004210 311 LLERMRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQCAMLSPQ 384 (768)
Q Consensus 311 ~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~Gaa~~a~~ls~~ 384 (768)
+.-++..+|+.+-.+.+ ..|+.+.+.||.|+.|.+.+.+.+.+|.++..+.+.+. ++.|||+.|+..++.
T Consensus 396 i~fqtr~Il~am~~~~~---~~i~~L~~~GG~s~N~ll~Q~~ADi~g~pv~~p~~~e~-~~~GaA~l~~~a~~~ 465 (516)
T KOG2517|consen 396 IAFQTREILEAMERDGG---HPISTLRVCGGLSKNPLLMQLQADILGLPVVRPQDVEA-VALGAAMLAGAASGK 465 (516)
T ss_pred HHHHHHHHHHHHHHhcC---CCcceeeeccccccCHHHHHHHHHHhCCccccccchhH-HHHHHHHHHHhhcCC
Confidence 33344444444333333 35788999999999999999999999999999999887 999999999988875
No 92
>PRK10854 exopolyphosphatase; Provisional
Probab=95.10 E-value=0.56 Score=53.75 Aligned_cols=76 Identities=13% Similarity=0.207 Sum_probs=46.1
Q ss_pred HHHHHHHHHcCCcceEeccchHHHHHHh-hhcccCCCCCCCcEEEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCCchh
Q 004210 155 RAYLDAATIAGLKPLRLMHDCTATALGY-GIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGR 233 (768)
Q Consensus 155 ~~l~~Aa~~AGl~~~~li~Ep~Aaal~y-~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~ 233 (768)
..+..+-+..|+++ .+|+...=|.+.| |... .++ .....+|+|+|||+|.+++++ ++.+... .. ..+|.-
T Consensus 100 ~fl~~i~~~tGl~i-~vIsG~EEA~l~~~gv~~-~l~--~~~~~lvvDIGGGStEl~~~~--~~~~~~~-~S--~~lG~v 170 (513)
T PRK10854 100 DFLKRAEKVIPYPI-EIISGNEEARLIFMGVEH-TQP--EKGRKLVIDIGGGSTELVIGE--NFEPILV-ES--RRMGCV 170 (513)
T ss_pred HHHHHHHHHHCCCe-EEeCHHHHHHHHHhhhhc-ccC--CCCCeEEEEeCCCeEEEEEec--CCCeeEe-EE--Eeccee
Confidence 34445556679998 6666655555555 4443 222 235689999999999999976 3332221 11 267766
Q ss_pred hHHHHH
Q 004210 234 DFDEVL 239 (768)
Q Consensus 234 ~~d~~l 239 (768)
.+.+.+
T Consensus 171 rl~e~f 176 (513)
T PRK10854 171 SFAQLY 176 (513)
T ss_pred eHHhhh
Confidence 665543
No 93
>PRK10640 rhaB rhamnulokinase; Provisional
Probab=95.03 E-value=0.095 Score=59.46 Aligned_cols=81 Identities=14% Similarity=0.071 Sum_probs=55.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCcCEEEEecCCCChHHHHHHHHhhcCCCCCCcCChhhHHHhHHHHHh
Q 004210 300 RREEFEKLSSSLLERMRIPCQKALAGS-GLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQC 378 (768)
Q Consensus 300 tr~~fe~~~~~~~~~i~~~i~~~l~~~-~~~~~~i~~V~LvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~Gaa~~a 378 (768)
+|.+|-..+-+-+.--...+-+.|++. +. .++.|.++||+++.+.+.+++.+.+|.++.... .++.++|||+.|
T Consensus 345 ~~~~l~RAvlEgva~~~r~~l~~l~~~~g~---~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~--~ea~alGaa~~a 419 (471)
T PRK10640 345 SDAELARCIFDSLALLYADVLHELAQLRGE---PFSQLHIVGGGCQNALLNQLCADACGIRVIAGP--VEASTLGNIGIQ 419 (471)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---CcceEEEECChhhhHHHHHHHHHHhCCCeeeCC--hhHHHHHHHHHH
Confidence 565555444333322223333334432 32 478899999999999999999999999885543 378899999999
Q ss_pred hHhcCCc
Q 004210 379 AMLSPQY 385 (768)
Q Consensus 379 ~~ls~~~ 385 (768)
+.-.+.+
T Consensus 420 ~~a~G~~ 426 (471)
T PRK10640 420 LMTLDEL 426 (471)
T ss_pred HHHcCCc
Confidence 8765543
No 94
>KOG2531 consensus Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=94.95 E-value=0.07 Score=57.31 Aligned_cols=55 Identities=20% Similarity=0.257 Sum_probs=47.9
Q ss_pred hcCCCCCCcCEEEEecCCCChHHHHHHHHhhcCCCCCCcCChhhHHHhHHHHHhhH
Q 004210 325 GSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQCAM 380 (768)
Q Consensus 325 ~~~~~~~~i~~V~LvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~Gaa~~a~~ 380 (768)
..|.....-..|+.+||.||...|-+.|.+.||.++..- ...+++|.|+|+.|+.
T Consensus 435 ~lg~~~~~~~rilvtGGAS~N~~Ilq~iadVf~apVy~~-~~~~sa~lG~A~ra~y 489 (545)
T KOG2531|consen 435 PLGFKSNPPTRILVTGGASRNEAILQIIADVFGAPVYTI-EGPNSAALGGAYRAAY 489 (545)
T ss_pred cccCCCCCCceEEEecCccccHHHHHHHHHHhCCCeEee-cCCchhhHHHHHHHHH
Confidence 346666678999999999999999999999999888655 7888999999999864
No 95
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=94.78 E-value=0.099 Score=60.19 Aligned_cols=52 Identities=21% Similarity=0.230 Sum_probs=44.3
Q ss_pred CcCEEEEecCCCChHHHHHHHHhhcCCCCCCcCChhhHHHhHHHHHhhHhcCC
Q 004210 332 KIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQCAMLSPQ 384 (768)
Q Consensus 332 ~i~~V~LvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~Gaa~~a~~ls~~ 384 (768)
.++.|.++||+++.+.+.+++.+.||.++....+ .++.++|||+.|+.-.+.
T Consensus 409 ~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~~-~e~~alGaA~lA~~~~G~ 460 (520)
T PRK10939 409 FPSSLVFAGGGSKGKLWSQILADVTGLPVKVPVV-KEATALGCAIAAGVGAGI 460 (520)
T ss_pred CCcEEEEeCCcccCHHHHHHHHHhcCCeeEEecc-cCchHHHHHHHHHHHhCC
Confidence 4788999999999999999999999998866654 467899999999866553
No 96
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=94.73 E-value=0.7 Score=52.71 Aligned_cols=77 Identities=22% Similarity=0.275 Sum_probs=47.9
Q ss_pred HHHHHHHHHHcCCcceEeccchHHHHHHh-hhcccCCCCCCCcEEEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCCch
Q 004210 154 RRAYLDAATIAGLKPLRLMHDCTATALGY-GIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGG 232 (768)
Q Consensus 154 r~~l~~Aa~~AGl~~~~li~Ep~Aaal~y-~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG 232 (768)
...+..+-+..|+++ .+|+...=|.+.| |.... ++. ....+|+|+|||+|.+++++ ++.+ .. ...-++|.
T Consensus 94 ~~fl~~i~~~tGl~i-evIsG~eEA~l~~~gv~~~-l~~--~~~~lviDIGGGStEl~~~~--~~~~--~~-~~Sl~lG~ 164 (496)
T PRK11031 94 DEFLAKAQEILGCPV-QVISGEEEARLIYQGVAHT-TGG--ADQRLVVDIGGASTELVTGT--GAQA--TS-LFSLSMGC 164 (496)
T ss_pred HHHHHHHHHHHCCCe-EEeCHHHHHHHHHHhhhhc-cCC--CCCEEEEEecCCeeeEEEec--CCce--ee-eeEEeccc
Confidence 445555666779998 6666555555555 44432 322 24589999999999999875 3333 11 12457887
Q ss_pred hhHHHHH
Q 004210 233 RDFDEVL 239 (768)
Q Consensus 233 ~~~d~~l 239 (768)
-.+.+.+
T Consensus 165 vrl~e~f 171 (496)
T PRK11031 165 VTWLERY 171 (496)
T ss_pred hHHHHHh
Confidence 7665544
No 97
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=94.65 E-value=0.16 Score=50.57 Aligned_cols=73 Identities=16% Similarity=0.241 Sum_probs=40.4
Q ss_pred HHHHHHHHHhhccCCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCcceEeccchHHHHHHhhhcccCCCCCCCcEEEEEEe
Q 004210 123 LSNLKQITEKNIKIPISNCVIGVPCYLTDVQRRAYLDAATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDI 202 (768)
Q Consensus 123 L~~l~~~a~~~~~~~~~~~VitVP~~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~ 202 (768)
..++.+.++..++.++ .++++-..|... +++.+--+. ||| +|....+.+....++..+++||
T Consensus 76 Ve~Ii~~v~~Af~~pv--~~v~~~G~~~ss--Ea~~~~~~v-------------AAa-NW~Ata~~~~e~~~dsci~VD~ 137 (330)
T COG1548 76 VEDIIDTVEKAFNCPV--YVVDVNGNFLSS--EALKNPREV-------------AAA-NWVATARFLAEEIKDSCILVDM 137 (330)
T ss_pred HHHHHHHHHHhcCCce--EEEeccCcCcCh--hHhcCHHHH-------------HHh-hhHHHHHHHHHhcCCceEEEec
Confidence 3445556666666554 788888888764 222221111 111 1211111111134677999999
Q ss_pred CCceEEEEEEE
Q 004210 203 GHCDTQVCVAS 213 (768)
Q Consensus 203 GggT~dvsv~~ 213 (768)
|+.|+|+--+.
T Consensus 138 GSTTtDIIPi~ 148 (330)
T COG1548 138 GSTTTDIIPIK 148 (330)
T ss_pred CCcccceEeec
Confidence 99999987664
No 98
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=94.39 E-value=1.7 Score=45.78 Aligned_cols=48 Identities=15% Similarity=0.041 Sum_probs=30.7
Q ss_pred CcCEEEEecCCCChHHHHHHHHhhcC-------CCCCCcCChhhHHHhHHHHHhh
Q 004210 332 KIHSVELVGSGSRIPAISRMLNSLFN-------REPGRTINASECVARGCALQCA 379 (768)
Q Consensus 332 ~i~~V~LvGG~srip~v~~~l~~~fg-------~~v~~~~n~~eava~Gaa~~a~ 379 (768)
+.+.|+|-||.+..+.+.+.+++.+. .++..+...+.+.++|||..+.
T Consensus 233 dpe~IvlgG~~~~~~~~~~~i~~~l~~~~~~~~~~i~~s~~~~~~~~~GAa~~~~ 287 (291)
T PRK05082 233 DCQCVVLGGSVGLAEGYLELVQAYLAQEPAIYHVPLLAAHYRHDAGLLGAALWAQ 287 (291)
T ss_pred CCCEEEEcCccccHHHHHHHHHHHHHhcccccCCeEEECccCCchhhhhHHHHhc
Confidence 46778888887766655566665552 1223334457788999998763
No 99
>PRK09698 D-allose kinase; Provisional
Probab=94.25 E-value=7.6 Score=41.12 Aligned_cols=43 Identities=12% Similarity=-0.045 Sum_probs=28.5
Q ss_pred cCCcceEeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEE
Q 004210 164 AGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVA 212 (768)
Q Consensus 164 AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~ 212 (768)
.|++ +.+.|+..|+|++-..... ....+++++.+|.| .-.+++
T Consensus 104 ~~~p-v~v~NDa~aaa~~E~~~~~----~~~~~~~~v~lgtG-IG~giv 146 (302)
T PRK09698 104 LNCP-VFFSRDVNLQLLWDVKENN----LTQQLVLGAYLGTG-MGFAVW 146 (302)
T ss_pred hCCC-EEEcchHhHHHHHHHHhcC----CCCceEEEEEecCc-eEEEEE
Confidence 4775 5899999999886543321 22357888888877 344444
No 100
>PRK09557 fructokinase; Reviewed
Probab=94.14 E-value=2.8 Score=44.50 Aligned_cols=44 Identities=25% Similarity=0.242 Sum_probs=29.0
Q ss_pred cCCcceEeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEE
Q 004210 164 AGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVA 212 (768)
Q Consensus 164 AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~ 212 (768)
.|++ +.+.|+..|+|++-.+.... ...++++++.+|.| +-.+++
T Consensus 96 ~~~p-v~~~NDa~aaA~aE~~~g~~---~~~~~~~~l~igtG-iG~giv 139 (301)
T PRK09557 96 LNRE-VRLANDANCLAVSEAVDGAA---AGKQTVFAVIIGTG-CGAGVA 139 (301)
T ss_pred HCCC-EEEccchhHHHHHHHHhccc---CCCCcEEEEEEccc-eEEEEE
Confidence 3775 58999999999886543221 23467888888865 344443
No 101
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=94.13 E-value=0.16 Score=53.52 Aligned_cols=64 Identities=16% Similarity=0.089 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCcCEEEEecCCCChHHHHHHHHhhcCC-CCCCcCChhhHHHhHHHH
Q 004210 310 SLLERMRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNR-EPGRTINASECVARGCAL 376 (768)
Q Consensus 310 ~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~fg~-~v~~~~n~~eava~Gaa~ 376 (768)
-...++...|+.+....+..+.+ -.++.+||++ |++-..|.+.+|. .+..+..+.-+-|+||++
T Consensus 219 ~~~~~m~~~i~~~~~~~g~~~~~-~~lv~~GG~g--~~~~~~la~~lg~~~v~~p~~~~v~~A~Ga~~ 283 (290)
T PF01968_consen 219 IANENMADAIREVSVERGYDPRD-FPLVAFGGAG--PLHAPELAEELGIPRVVPPHYAGVANAIGAAV 283 (290)
T ss_dssp HHHHHHHHHHHHHHHHHT--EEE-E-------------------------------------------
T ss_pred HHHHHHHHHHHHHHHhhCCCccc-cccccccccc--cccccccccccccccccccccccccccccccc
Confidence 34444555555554444544322 2344455555 7788888888984 455666678899999975
No 102
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=93.66 E-value=0.52 Score=51.93 Aligned_cols=99 Identities=14% Similarity=0.208 Sum_probs=62.0
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHH-HHcCCcceEeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEeeCC
Q 004210 139 SNCVIGVPCYLTDVQRRAYLDAA-TIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENG 217 (768)
Q Consensus 139 ~~~VitVP~~~~~~qr~~l~~Aa-~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~ 217 (768)
..+++|=+..-....|+.|.+.. +.-|++-+.+=-+.. +++.+ +.........||+++|..+|-|-.+- +|
T Consensus 117 hPIilTE~laNP~~~R~~m~elLFE~YgvP~V~yGIDsl---fS~~h---N~~~~~~~~~liis~g~~~T~vipvl--dG 188 (645)
T KOG0681|consen 117 HPIILTEALANPVYSRSEMVELLFETYGVPKVAYGIDSL---FSFYH---NYGKSSNKSGLIISMGHSATHVIPVL--DG 188 (645)
T ss_pred CCeeeehhccChHHHHHHHHHHHHHHcCCcceeechhhH---HHHhh---ccCcccCcceEEEecCCCcceeEEEe--cC
Confidence 45788888777777888777655 556877544321111 11111 11112334689999999998876653 45
Q ss_pred eEEEEEEeCCCCCchhhHHHHHHHHHHHH
Q 004210 218 HMKILSHAFDESLGGRDFDEVLSSYFAAQ 246 (768)
Q Consensus 218 ~~~vl~~~~~~~lGG~~~d~~l~~~l~~~ 246 (768)
.. ++....-.++||.....-|.+.+..+
T Consensus 189 ~~-il~~~kRiN~GG~qa~dYL~~Lmq~K 216 (645)
T KOG0681|consen 189 RL-ILKDVKRINWGGYQAGDYLSRLMQLK 216 (645)
T ss_pred ch-hhhcceeeccCcchHHHHHHHHHhcc
Confidence 44 34444567899999888777777654
No 103
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=93.61 E-value=0.5 Score=53.16 Aligned_cols=57 Identities=16% Similarity=0.153 Sum_probs=39.3
Q ss_pred HHHHHHHHHHcCCcceEeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEE
Q 004210 154 RRAYLDAATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVAS 213 (768)
Q Consensus 154 r~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~ 213 (768)
-+.+..+-+..|+++--|--|-+|--..+|.-.. ++. ....+|+|+|||+|.+++..
T Consensus 91 ~eFl~rv~~~~G~~ievIsGeeEArl~~lGv~~~-~~~--~~~~lv~DIGGGStEl~~g~ 147 (492)
T COG0248 91 DEFLARVEKELGLPIEVISGEEEARLIYLGVAST-LPR--KGDGLVIDIGGGSTELVLGD 147 (492)
T ss_pred HHHHHHHHHHhCCceEEeccHHHHHHHHHHHHhc-CCC--CCCEEEEEecCCeEEEEEec
Confidence 3567778888899984444445554444454432 221 67799999999999999986
No 104
>PF13941 MutL: MutL protein
Probab=92.71 E-value=1.6 Score=48.45 Aligned_cols=42 Identities=24% Similarity=0.337 Sum_probs=29.9
Q ss_pred EEEEEcCccceEEEEEE--cCCceEEEeCCCCCccceEEEEeeCCceeecH
Q 004210 3 VVGFDIGNENCVIAAVK--QGGMLDVLLNDESKRETPTVVSFSEKQRFLGS 51 (768)
Q Consensus 3 viGID~Gtt~s~va~~~--~~~~~~i~~n~~~~r~~Ps~v~~~~~~~~~G~ 51 (768)
++-+|||||||++..++ .+. ..++-. -..||.| .++....|-
T Consensus 2 ~L~~DiGST~Tk~~l~d~~~~~-~~~ig~----a~apTTv--~~~Dv~~G~ 45 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLFDLVDGE-PRLIGQ----AEAPTTV--EPGDVTIGL 45 (457)
T ss_pred EEEEEeCCcceEEeEEeccCCc-cEEEEE----EeCCCCc--CcccHHHHH
Confidence 78999999999999998 666 666633 3567777 223455553
No 105
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=92.69 E-value=0.32 Score=51.19 Aligned_cols=74 Identities=16% Similarity=0.277 Sum_probs=42.7
Q ss_pred HHHHHHHcCCcceEeccchHHHHHHh-hhcccCCCCCCCcEEEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCCchhhH
Q 004210 157 YLDAATIAGLKPLRLMHDCTATALGY-GIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDF 235 (768)
Q Consensus 157 l~~Aa~~AGl~~~~li~Ep~Aaal~y-~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~ 235 (768)
+...-+..|+++ .+|+...=|.+.| |... .+ ......+++|+|||+|.+++++ ++.+ .... .-++|.-.+
T Consensus 77 ~~~i~~~tGi~i-~iIsgeeEa~l~~~gv~~-~l--~~~~~~lviDIGGGStEl~~~~--~~~~--~~~~-Sl~lG~vrl 147 (285)
T PF02541_consen 77 LDRIKKETGIDI-EIISGEEEARLSFLGVLS-SL--PPDKNGLVIDIGGGSTELILFE--NGKV--VFSQ-SLPLGAVRL 147 (285)
T ss_dssp HHHHHHHHSS-E-EEE-HHHHHHHHHHHHHH-HS--TTTSSEEEEEEESSEEEEEEEE--TTEE--EEEE-EES--HHHH
T ss_pred HHHHHHHhCCce-EEecHHHHHHHHHHHHHh-hc--cccCCEEEEEECCCceEEEEEE--CCee--eEee-eeehHHHHH
Confidence 444445679997 5555555445444 3332 22 2356789999999999999876 3433 2222 457888777
Q ss_pred HHHH
Q 004210 236 DEVL 239 (768)
Q Consensus 236 d~~l 239 (768)
.+.+
T Consensus 148 ~e~~ 151 (285)
T PF02541_consen 148 TERF 151 (285)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6554
No 106
>PTZ00297 pantothenate kinase; Provisional
Probab=92.50 E-value=14 Score=47.55 Aligned_cols=72 Identities=18% Similarity=0.122 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH-hcCCCCCCcCEEEEecC-CCChHHHHHHHHhhc-----C-CCCCCcCChhhHHHhHHHH
Q 004210 305 EKLSSSLLERMRIPCQKALA-GSGLNVEKIHSVELVGS-GSRIPAISRMLNSLF-----N-REPGRTINASECVARGCAL 376 (768)
Q Consensus 305 e~~~~~~~~~i~~~i~~~l~-~~~~~~~~i~~V~LvGG-~srip~v~~~l~~~f-----g-~~v~~~~n~~eava~Gaa~ 376 (768)
+++++.++.-|..-|-+.-- .+ ...+|+.|+++|+ -...|...+.|..++ | .+....-+....-|+||++
T Consensus 1365 ~Di~~sll~~is~nIgqia~l~a--~~~~~~~i~f~G~~i~~~~~~~~~l~~a~~~ws~g~~~a~fl~hegy~ga~Ga~~ 1442 (1452)
T PTZ00297 1365 IDIVRSLLNMISSNVTQLAYLHS--RVQGVPNIFFAGGFVRDNPIIWSHISSTMKYWSKGECHAHFLEHDGYLGALGCAT 1442 (1452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHcCCCEEEEecchhcCCHHHHHHHHHHHHHHcCCCeeEEEecCccccHHhhhhh
Confidence 34455555544444432211 11 1236889999999 455888888887665 2 3445556777889999986
Q ss_pred Hh
Q 004210 377 QC 378 (768)
Q Consensus 377 ~a 378 (768)
..
T Consensus 1443 ~~ 1444 (1452)
T PTZ00297 1443 LD 1444 (1452)
T ss_pred cC
Confidence 43
No 107
>PTZ00288 glucokinase 1; Provisional
Probab=92.48 E-value=2.2 Score=47.07 Aligned_cols=20 Identities=25% Similarity=0.451 Sum_probs=17.6
Q ss_pred eEEEEEcCccceEEEEEEcC
Q 004210 2 SVVGFDIGNENCVIAAVKQG 21 (768)
Q Consensus 2 ~viGID~Gtt~s~va~~~~~ 21 (768)
.++|+|+|.|++++++++..
T Consensus 27 ~~~~~DiGgt~~R~~~~~~~ 46 (405)
T PTZ00288 27 IFVGCDVGGTNARVGFAREV 46 (405)
T ss_pred eEEEEEecCCceEEEEEecc
Confidence 48999999999999998753
No 108
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=92.20 E-value=8.2 Score=41.15 Aligned_cols=38 Identities=26% Similarity=0.405 Sum_probs=26.9
Q ss_pred cCCcceEeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCc
Q 004210 164 AGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHC 205 (768)
Q Consensus 164 AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~Ggg 205 (768)
.|++ +.+-|+..|+|++..+.... ....+++++-+|-|
T Consensus 106 ~~~P-v~veNDan~aalaE~~~g~~---~~~~~~~~i~~gtG 143 (314)
T COG1940 106 LGLP-VFVENDANAAALAEAWFGAG---RGIDDVVYITLGTG 143 (314)
T ss_pred HCCC-EEEecHHHHHHHHHHHhCCC---CCCCCEEEEEEccc
Confidence 3555 59999999999987765431 23456788887766
No 109
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=92.10 E-value=1.9 Score=42.13 Aligned_cols=30 Identities=17% Similarity=0.065 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHcCCcceEeccchHHHHHH
Q 004210 152 VQRRAYLDAATIAGLKPLRLMHDCTATALG 181 (768)
Q Consensus 152 ~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~ 181 (768)
...+.+.++++.|||++..++.+|.|++.+
T Consensus 157 ~~v~n~~~~v~~agl~v~~i~~~~~A~~~a 186 (187)
T smart00842 157 SAIQNLEKCVERAGLEVDGIVLEPLASAEA 186 (187)
T ss_pred HHHHHHHHHHHHcCCchhhEEehhhhhEec
Confidence 456788899999999999999999998753
No 110
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=91.76 E-value=2.8 Score=44.53 Aligned_cols=53 Identities=23% Similarity=0.318 Sum_probs=38.6
Q ss_pred CCcCEEEEecCCCChHHHHHHHHhhcCC----CCCCcCCh----hhHHHhHHHHHhhHhcCC
Q 004210 331 EKIHSVELVGSGSRIPAISRMLNSLFNR----EPGRTINA----SECVARGCALQCAMLSPQ 384 (768)
Q Consensus 331 ~~i~~V~LvGG~srip~v~~~l~~~fg~----~v~~~~n~----~eava~Gaa~~a~~ls~~ 384 (768)
.+.+.|+|.|-.+|+|-+.+.+++.|+. ++ ..+.+ -..+|.|||+.|.-+.+.
T Consensus 259 ~~~~~IilSGr~~~~~~~~~~l~~~l~~~~~~~v-~~l~~~~~~aKeaA~GaAiIA~glaGG 319 (343)
T PF07318_consen 259 PDPDEIILSGRFSRIPEFRKKLEDRLEDYFPVKV-RKLEGLARKAKEAAQGAAIIANGLAGG 319 (343)
T ss_pred CCCCEEEEeccccccHHHHHHHHHHHHhhcccce-eecccccccchhhhhhHHHHhhhhhcc
Confidence 3678899999999999998888877742 22 12222 234799999999877654
No 111
>PLN02666 5-oxoprolinase
Probab=89.88 E-value=3.5 Score=51.98 Aligned_cols=76 Identities=16% Similarity=0.096 Sum_probs=47.8
Q ss_pred ecHHHHHHHHHHHH-HHHHHHHHHHHHhcCCCCCCcCEEEEecCCCChHHHHHHHHhhcCCC-CCCcCChhhHHHhHHHH
Q 004210 299 IRREEFEKLSSSLL-ERMRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNRE-PGRTINASECVARGCAL 376 (768)
Q Consensus 299 itr~~fe~~~~~~~-~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~fg~~-v~~~~n~~eava~Gaa~ 376 (768)
++-++...-+..+. ..+...|+.+....|.++.+ -.++..||+ =|...-.|.+.+|.+ +..+.+|.-.-|+|+++
T Consensus 454 ~~~e~aA~~i~~ia~~~m~~air~i~~~~G~dpr~-~~l~afGGa--gp~ha~~lA~~lgi~~vivP~~~gv~sA~G~~~ 530 (1275)
T PLN02666 454 MSVEEVALGFVRVANEAMCRPIRQLTEMKGYETAN-HALACFGGA--GPQHACAIARALGMSEVFVHRYCGILSAYGMGL 530 (1275)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC-ceEEEecCc--HHHHHHHHHHHcCCCEEEeCCCccHHHHHHHHh
Confidence 34444443333333 34445666666666776544 233444444 477778899999955 77888999999999975
Q ss_pred H
Q 004210 377 Q 377 (768)
Q Consensus 377 ~ 377 (768)
.
T Consensus 531 a 531 (1275)
T PLN02666 531 A 531 (1275)
T ss_pred h
Confidence 3
No 112
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=89.47 E-value=2.5 Score=50.08 Aligned_cols=47 Identities=21% Similarity=0.426 Sum_probs=40.2
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccHHHHHHHHHHHHHHhhhhc
Q 004210 683 SLPSKVRDAVIDECSKAEEWLREKVTQQDSLPKDADPILWSTEIKRKSEALDLTCKCIM 741 (768)
Q Consensus 683 ~~~~ee~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~~~i~ 741 (768)
.+++++++.+.+.+++++.||++ +..-+.+++..|+++|...++++.
T Consensus 563 ~~t~ee~~~l~~~l~~~~~wL~~------------~~~~~~~~~~~kl~eL~~~~~pi~ 609 (653)
T PTZ00009 563 KLSDSDKATIEKAIDEALEWLEK------------NQLAEKEEFEHKQKEVESVCNPIM 609 (653)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhc------------CCchhHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999974 112356899999999999999998
No 113
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=89.34 E-value=1.9 Score=45.68 Aligned_cols=109 Identities=15% Similarity=0.055 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHhhccCCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCcceEeccchHHHHHHhhhcccCCCCCCCcEEEE
Q 004210 120 GMLLSNLKQITEKNIKIPISNCVIGVPCYLTDVQRRAYLDAATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVF 199 (768)
Q Consensus 120 a~~L~~l~~~a~~~~~~~~~~~VitVP~~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv 199 (768)
...|+..++.+..+ +.....+|-|=-..--.+....+...-...|+++ ++|+...=|.+.|.--...++. ...++
T Consensus 55 ~~~l~~f~~~~~~~-~v~~i~~vaTsa~R~A~N~~~~~~~i~~~tgi~i-~visg~eEa~l~~~gv~~~~~~---~~~~v 129 (300)
T TIGR03706 55 LEALKRFAELLRGF-PVDEVRAVATAALRDAKNGPEFLREAEAILGLPI-EVISGEEEARLIYLGVAHTLPI---ADGLV 129 (300)
T ss_pred HHHHHHHHHHHHhC-CCCeEEEEEcHHHHcCCCHHHHHHHHHHHHCCCe-EEeChHHHHHHHHHHHHhCCCC---CCcEE
Confidence 34555555555433 3222223222222211222233333335679987 6777777777666322222221 22499
Q ss_pred EEeCCceEEEEEEEeeCCeEEEEEEeCCCCCchhhHHHH
Q 004210 200 VDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEV 238 (768)
Q Consensus 200 ~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~d~~ 238 (768)
+|+|||+|.++++. ++.+ .. ...-++|.-.+.+.
T Consensus 130 ~DiGGGSte~~~~~--~~~~--~~-~~Sl~lG~vrl~e~ 163 (300)
T TIGR03706 130 VDIGGGSTELILGK--DFEP--GE-GVSLPLGCVRLTEQ 163 (300)
T ss_pred EEecCCeEEEEEec--CCCE--eE-EEEEccceEEhHHh
Confidence 99999999999875 3332 11 11356676665554
No 114
>COG2192 Predicted carbamoyl transferase, NodU family [Posttranslational modification, protein turnover, chaperones]
Probab=88.89 E-value=46 Score=37.63 Aligned_cols=81 Identities=14% Similarity=0.067 Sum_probs=54.8
Q ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCEEEEecCCCChHHHH-HHHHhhcCCCCCCcCCh-hhHHHhHHH
Q 004210 298 FIRREEFEKLSSSLLERMRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAIS-RMLNSLFNREPGRTINA-SECVARGCA 375 (768)
Q Consensus 298 ~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~-~~l~~~fg~~v~~~~n~-~eava~Gaa 375 (768)
.....+|-..++..++++.-.+-+.+.+.. ....+.+.||....-..- +.+.+.++.++...+.+ |...|.|||
T Consensus 255 ~~~~~diAasaQ~~lE~l~l~~~~~~~~~~----g~~~L~~AGGVAlNv~~N~~~l~~~~f~dlfV~Pa~gD~G~AvGAA 330 (555)
T COG2192 255 TERAADIAASAQAYLEELVLEMLRYLREET----GEDNLALAGGVALNVKANGKLLRRGLFEDLFVQPAMGDAGLAVGAA 330 (555)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHh----CccceEEccceeeeeeehHhHhhcccCceeEecCCCCCcchHHHHH
Confidence 344455666667777776665555555432 145699999988766665 77777777677665544 788999999
Q ss_pred HHhhHhc
Q 004210 376 LQCAMLS 382 (768)
Q Consensus 376 ~~a~~ls 382 (768)
+++...-
T Consensus 331 l~~~~~~ 337 (555)
T COG2192 331 LAVKREL 337 (555)
T ss_pred HHHHHHh
Confidence 9887543
No 115
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=88.75 E-value=4.5 Score=43.80 Aligned_cols=71 Identities=18% Similarity=0.197 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCcCEEEEecCCCChHHHHHHHHhhcCCCCCC----cCChhhHHHhHHHHHhhH
Q 004210 307 LSSSLLERMRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPGR----TINASECVARGCALQCAM 380 (768)
Q Consensus 307 ~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~fg~~v~~----~~n~~eava~Gaa~~a~~ 380 (768)
++.-+..-+...|-+.+.... ...+.|+++||+++.|++.++|++.++.++.. ..+++.-=|..-|++|..
T Consensus 264 ~~aTlt~~TA~sI~~~~~~~~---~~~~~vlv~GGGa~N~~Lm~~L~~~l~~~v~~~~~~G~~~da~EA~aFA~La~~ 338 (365)
T PRK09585 264 VQATLTELTAASIARAVRRLP---PGPDELLVCGGGARNPTLMERLAALLPTEVATTDALGIDGDAKEALAFAWLAVR 338 (365)
T ss_pred HHHHHHHHHHHHHHHHHHhcc---CCCCEEEEECCCcchHHHHHHHHHhcCCcccCHHHcCCChhHHHHHHHHHHHHH
Confidence 333444444455555554432 23468999999999999999999999633321 134444444555666653
No 116
>PRK14878 UGMP family protein; Provisional
Probab=87.94 E-value=29 Score=37.24 Aligned_cols=53 Identities=17% Similarity=0.082 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhcCCCCCCcCEEEEecCCCChHHHHHHHHhhc---CCCCCCcC---ChhhHHHh
Q 004210 315 MRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLF---NREPGRTI---NASECVAR 372 (768)
Q Consensus 315 i~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~f---g~~v~~~~---n~~eava~ 372 (768)
+...++++++..+ +..|+|+||.+...++++.+.+.+ |.++..+. -.|.++++
T Consensus 229 l~~~~~~~~~~~g-----~~~vvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~~~~~D~GimI 287 (323)
T PRK14878 229 LVEVTERALAHTG-----KKEVLLVGGVAANRRLREKLEIMAEDRGAKFYVVPPEYAGDNGAMI 287 (323)
T ss_pred HHHHHHHHHHHhC-----CCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCCCCchHHHHH
Confidence 3334444444433 667999999999999999999876 44443333 23666666
No 117
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=87.61 E-value=21 Score=38.14 Aligned_cols=56 Identities=13% Similarity=0.083 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhcCCCCCCcCEEEEecCCCChHHHHHHHHhhc---CCCCCCcC---ChhhHHHhHHH
Q 004210 315 MRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLF---NREPGRTI---NASECVARGCA 375 (768)
Q Consensus 315 i~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~f---g~~v~~~~---n~~eava~Gaa 375 (768)
+...+.++++.. .++.|+|.||.+....+.+.|.+.+ |.++..+. -.|.++++|+|
T Consensus 247 l~~~~~~~~~~~-----~~~~v~lsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~p~~D~Gi~Ig~a 308 (314)
T TIGR03723 247 LVEKTKRALKKT-----GLKTLVVAGGVAANSRLRERLEELAEKAGLEVFIPPLELCTDNAAMIAAA 308 (314)
T ss_pred HHHHHHHHHHHh-----CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCCCCChHHHHHHHH
Confidence 334445555543 4677999999999999999999887 54443333 34889999986
No 118
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=87.17 E-value=0.66 Score=51.12 Aligned_cols=66 Identities=15% Similarity=0.127 Sum_probs=47.9
Q ss_pred HHHHHHHHHHhcCCCCC--CcCEEEEecCCCChHHHHHHHHhhc-C-------CCCCCcCChhhHHHhHHHHHhhH
Q 004210 315 MRIPCQKALAGSGLNVE--KIHSVELVGSGSRIPAISRMLNSLF-N-------REPGRTINASECVARGCALQCAM 380 (768)
Q Consensus 315 i~~~i~~~l~~~~~~~~--~i~~V~LvGG~srip~v~~~l~~~f-g-------~~v~~~~n~~eava~Gaa~~a~~ 380 (768)
+..++..+|...-.... -+..|+|+||+|.+|++.+.|..-+ + ..|....||-..+=+||+.+|+.
T Consensus 539 l~Ei~~~il~r~p~~eq~~lV~nVllTGG~s~~pGmkeRi~kElt~mrP~gS~i~V~rasdP~LDAW~GA~~~a~n 614 (645)
T KOG0681|consen 539 LAEIMDTILRRYPHDEQEKLVSNVLLTGGCSQLPGMKERIKKELTSMRPVGSSINVVRASDPVLDAWRGASAWAAN 614 (645)
T ss_pred HHHHHHHHHHhCchhhhHhhhhheEeecccccCcCHHHHHHHHhheecccCCceEEEecCCcchhhhhhhHHhhcC
Confidence 34445555554321111 2788999999999999999998776 2 23566778999999999999886
No 119
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=87.12 E-value=44 Score=35.32 Aligned_cols=45 Identities=18% Similarity=0.050 Sum_probs=29.7
Q ss_pred HcCCcceEeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEE
Q 004210 163 IAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVA 212 (768)
Q Consensus 163 ~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~ 212 (768)
..|++ +.+.|+..|+|++-.+.... ....+++++.+|.| +-.+++
T Consensus 95 ~~~~p-V~ieNDa~aaalaE~~~g~~---~~~~~~~~l~~gtG-iG~giv 139 (303)
T PRK13310 95 RLGRD-VRLDNDANCFALSEAWDDEF---TQYPLVMGLILGTG-VGGGLV 139 (303)
T ss_pred HHCCC-eEEeccHhHHHHHHhhhccc---cCCCcEEEEEecCc-eEEEEE
Confidence 34776 58999999999875443221 23467889889876 344443
No 120
>PRK13411 molecular chaperone DnaK; Provisional
Probab=86.93 E-value=5.1 Score=47.46 Aligned_cols=47 Identities=13% Similarity=0.167 Sum_probs=39.6
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccHHHHHHHHHHHHHHhhhhc
Q 004210 682 HSLPSKVRDAVIDECSKAEEWLREKVTQQDSLPKDADPILWSTEIKRKSEALDLTCKCIM 741 (768)
Q Consensus 682 ~~~~~ee~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~~~i~ 741 (768)
..++++++..+.+.+++++.||.+ ++ ...++++.+.++|++.+.++.
T Consensus 550 ~~~~~~er~~i~~~l~~~~~wL~~------------~~-~~~~~~~~~~~el~~~~~~i~ 596 (653)
T PRK13411 550 ELISEELKQRAEQKVEQLEAALTD------------PN-ISLEELKQQLEEFQQALLAIG 596 (653)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhc------------CC-CCHHHHHHHHHHHHHHHHHHH
Confidence 347999999999999999999965 11 255899999999999988887
No 121
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=86.66 E-value=0.59 Score=40.24 Aligned_cols=22 Identities=32% Similarity=0.533 Sum_probs=19.4
Q ss_pred CeEEEEEcCccceEEEEEEcCC
Q 004210 1 MSVVGFDIGNENCVIAAVKQGG 22 (768)
Q Consensus 1 m~viGID~Gtt~s~va~~~~~~ 22 (768)
|.++|||+|.|++++|+++..+
T Consensus 1 ~~ilgiD~Ggt~i~~a~~d~~g 22 (99)
T smart00732 1 KRVLGLDPGRKGIGVAVVDETG 22 (99)
T ss_pred CcEEEEccCCCeEEEEEECCCC
Confidence 7799999999999999987554
No 122
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=86.62 E-value=4.5 Score=47.80 Aligned_cols=47 Identities=17% Similarity=0.220 Sum_probs=40.9
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccHHHHHHHHHHHHHHhhhhc-CC
Q 004210 682 HSLPSKVRDAVIDECSKAEEWLREKVTQQDSLPKDADPILWSTEIKRKSEALDLTCKCIM-RS 743 (768)
Q Consensus 682 ~~~~~ee~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~~~i~-kp 743 (768)
..+++++++.+.+.+++++.||++. ..++++.+.++|+..++++. |-
T Consensus 548 ~~~~~~e~~~i~~~l~~~~~wL~~~---------------~~~~i~~k~~~L~~~~~~~~~~~ 595 (627)
T PRK00290 548 DKVPADEKEKIEAAIKELKEALKGE---------------DKEAIKAKTEELTQASQKLGEAM 595 (627)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcC---------------CHHHHHHHHHHHHHHHHHHHHHH
Confidence 3479999999999999999999862 35899999999999999998 53
No 123
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=84.82 E-value=2.8 Score=46.12 Aligned_cols=83 Identities=16% Similarity=0.201 Sum_probs=57.7
Q ss_pred ecHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCCCCcCEEEEecCCCChHHHHHHHHhhcCCCCCCcCChhhHHHhHHHHH
Q 004210 299 IRREEFEKLS-SSLLERMRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQ 377 (768)
Q Consensus 299 itr~~fe~~~-~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~Gaa~~ 377 (768)
.++++|-+.. +.+.-+....++..-++++. .+..+-+=||.++..++-+.+.+.+|.+|.++.+ .|..|+|||+.
T Consensus 371 t~~~hi~RA~LEsiayQ~~dv~~aM~~d~~~---~~~~LrvDGG~s~n~~lmQfqADilg~~V~Rp~~-~EtTAlGaA~l 446 (499)
T COG0554 371 TTKAHIARATLESIAYQTRDVLEAMEKDSGI---KLTRLRVDGGASRNNFLMQFQADILGVPVERPVV-LETTALGAAYL 446 (499)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CceeEEEcCccccchhHHHHHHHHhCCeeecccc-chhhHHHHHHH
Confidence 4555544332 22223333444443344454 5788999999999999999999999998877766 56779999999
Q ss_pred hhHhcCCc
Q 004210 378 CAMLSPQY 385 (768)
Q Consensus 378 a~~ls~~~ 385 (768)
|..-.+.+
T Consensus 447 AGla~G~w 454 (499)
T COG0554 447 AGLAVGFW 454 (499)
T ss_pred HhhhhCcC
Confidence 98776643
No 124
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=84.79 E-value=0.97 Score=41.62 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=19.8
Q ss_pred CeEEEEEcCccceEEEEEEcCC
Q 004210 1 MSVVGFDIGNENCVIAAVKQGG 22 (768)
Q Consensus 1 m~viGID~Gtt~s~va~~~~~~ 22 (768)
|.++|||+|+..+.+|+.++..
T Consensus 1 mriL~lD~G~kriGiAvsd~~~ 22 (135)
T PF03652_consen 1 MRILGLDYGTKRIGIAVSDPLG 22 (135)
T ss_dssp -EEEEEEECSSEEEEEEEETTT
T ss_pred CeEEEEEeCCCeEEEEEecCCC
Confidence 8899999999999999998876
No 125
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=84.49 E-value=5.7 Score=43.18 Aligned_cols=18 Identities=33% Similarity=0.514 Sum_probs=16.5
Q ss_pred eEEEEEcCccceEEEEEE
Q 004210 2 SVVGFDIGNENCVIAAVK 19 (768)
Q Consensus 2 ~viGID~Gtt~s~va~~~ 19 (768)
.++.||||.||.+||++.
T Consensus 76 ~~LaiD~GGTnlRvc~V~ 93 (466)
T COG5026 76 SVLAIDLGGTNLRVCLVV 93 (466)
T ss_pred CEEEEecCCceEEEEEEE
Confidence 489999999999999986
No 126
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=83.85 E-value=90 Score=36.06 Aligned_cols=63 Identities=16% Similarity=0.067 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhcCCCCCCcCEEEEecCCCChHHHHHHHHhhc---CCCCCCcC---ChhhHHHhHHHHHhhHhc
Q 004210 315 MRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLF---NREPGRTI---NASECVARGCALQCAMLS 382 (768)
Q Consensus 315 i~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~f---g~~v~~~~---n~~eava~Gaa~~a~~ls 382 (768)
+...+.++++..| ++.|+|+||.....++++.|.+.+ |.++..+. -.|.++++|++.+....+
T Consensus 233 l~~~~~~~~~~~g-----~~~lvlsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~~~~D~g~~ia~a~~~~~~~ 301 (535)
T PRK09605 233 LTEVTERALAHTG-----KDEVLLVGGVAANNRLREMLKEMCEERGADFYVPEPRFCGDNGAMIAWLGLLMYKA 301 (535)
T ss_pred HHHHHHHHHHHhC-----CCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCccccchHHHHHHHHHHHHHc
Confidence 3344444554433 567999999999999999999665 44444443 458899999987655443
No 127
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=83.85 E-value=7.4 Score=45.68 Aligned_cols=45 Identities=22% Similarity=0.322 Sum_probs=38.6
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccHHHHHHHHHHHHHHhhhhc
Q 004210 682 HSLPSKVRDAVIDECSKAEEWLREKVTQQDSLPKDADPILWSTEIKRKSEALDLTCKCIM 741 (768)
Q Consensus 682 ~~~~~ee~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~~~i~ 741 (768)
..+++++++.+.+.+++++.||.+. ...+++.+.++|++.++++.
T Consensus 546 ~~~~~~e~~~l~~~l~~~~~wL~~~---------------d~~~i~~~~~~l~~~~~~~~ 590 (595)
T TIGR02350 546 DKLPAEEKEKIEKAVAELKEALKGE---------------DVEEIKAKTEELQQALQKLA 590 (595)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcC---------------CHHHHHHHHHHHHHHHHHHH
Confidence 3479999999999999999999762 22689999999999998876
No 128
>COG2377 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases [Posttranslational modification, protein turnover, chaperones]
Probab=81.06 E-value=17 Score=38.87 Aligned_cols=166 Identities=13% Similarity=0.091 Sum_probs=87.6
Q ss_pred CCcEEEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCCchhhHHHHHHHHHHHHHhhhcccCcc--CChHHHHHHHHHHH
Q 004210 193 GPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEVLSSYFAAQFKQQYDIDVY--TNVKASIRLRASCE 270 (768)
Q Consensus 193 ~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~--~~~~~~~rL~~~ae 270 (768)
.+...+|+++||= .-+|.+. .+. .|++. |.--|-.-+|..+..+..+.|.+....-.. -+.....+|+
T Consensus 161 ~~~~r~vlNiGGI-aNlt~l~--~~~-~v~g~--DtGPgN~llD~wi~~~~g~~yD~~g~~A~~G~v~~~ll~~ll---- 230 (371)
T COG2377 161 PRERRAVLNIGGI-ANLTYLP--PGG-PVLGF--DTGPGNMLLDAWIQAHGGKPYDKDGAWAASGKVDEALLARLL---- 230 (371)
T ss_pred CCCCeEEEeccce-EEEEecC--CCC-ceeee--ecCCcchHHHHHHHHhhCCCcCcCcchhhcCCcCHHHHHHHh----
Confidence 3578999999973 2333332 222 45544 566788888888887776555432111111 1122222222
Q ss_pred HHhhhccCCCcccEEEeccccCcceEEE-----------ecHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCEEEEe
Q 004210 271 KLKKVLSANAEAPLNIECLMNEKDVKGF-----------IRREEFEKLSSSLLERMRIPCQKALAGSGLNVEKIHSVELV 339 (768)
Q Consensus 271 ~~K~~Ls~~~~~~i~i~~l~~~~d~~~~-----------itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~Lv 339 (768)
...-|+... +...+-.+|... ++.+++..-...+. .. .+++.......+.+.++++
T Consensus 231 -~~p~F~~~~------PkStgRe~F~~~wl~~~~~~~~~l~a~Dv~aTL~elt---A~---tIv~s~~~~~~~p~~l~vc 297 (371)
T COG2377 231 -AHPYFALPA------PKSTGRELFNLQWLEQHLDDTQLLNAEDVQATLVELT---AA---TIVKSVATLQGDPRRLVVC 297 (371)
T ss_pred -hCCcccCCC------cccCCccccchhhHHHHHhhccCCCHHHHHHHHHHHH---HH---HHHHHHhhccCCCceeEee
Confidence 222232111 000111122221 33333332222221 11 2222223334467899999
Q ss_pred cCCCChHHHHHHHHhhc-CCCCC----CcCChhhHHHhHHHHHhhHh
Q 004210 340 GSGSRIPAISRMLNSLF-NREPG----RTINASECVARGCALQCAML 381 (768)
Q Consensus 340 GG~srip~v~~~l~~~f-g~~v~----~~~n~~eava~Gaa~~a~~l 381 (768)
||+.+.|.+.+.|...+ |..|. ..+++|.-=|.+-|+.|...
T Consensus 298 GGG~~N~llm~rLa~l~~g~~V~~t~~~g~~gd~~EA~afA~LA~r~ 344 (371)
T COG2377 298 GGGRRNPLLMARLAALLEGVEVATTDEAGLDGDAVEAEAFAWLAWRT 344 (371)
T ss_pred cCCccCHHHHHHHHHhcCCCeeeechhcCCCcchhhHHHHHHHHHHH
Confidence 99999999999999999 54443 25577777777778777654
No 129
>PLN02920 pantothenate kinase 1
Probab=80.90 E-value=36 Score=37.08 Aligned_cols=48 Identities=8% Similarity=-0.086 Sum_probs=35.8
Q ss_pred CcCEEEEecCCCChH-HHHHHHHhh---c--C-CCCCCcCChhhHHHhHHHHHhh
Q 004210 332 KIHSVELVGSGSRIP-AISRMLNSL---F--N-REPGRTINASECVARGCALQCA 379 (768)
Q Consensus 332 ~i~~V~LvGG~srip-~v~~~l~~~---f--g-~~v~~~~n~~eava~Gaa~~a~ 379 (768)
+++.|+++|+..|.+ ...+.|.-. . | .+....-+.....|+||++...
T Consensus 297 ~ik~Ivf~G~fir~~~~tm~~ls~a~~fwS~g~~ka~FLrHeGYlGAlGAfl~~~ 351 (398)
T PLN02920 297 GLKRIFFGGFFIRGHSYTMDTISVAVHFWSKGEAKAMFLRHEGFLGALGAFMSYE 351 (398)
T ss_pred CCCEEEEEeecccCcHHHHHHHHHHHHHhccCceeEEEecCcchhHHHHHHHhcc
Confidence 688999999999998 666644433 3 2 4566777888999999986543
No 130
>TIGR03281 methan_mark_12 putative methanogenesis marker protein 12. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=80.54 E-value=6.9 Score=40.65 Aligned_cols=174 Identities=17% Similarity=0.132 Sum_probs=92.4
Q ss_pred ccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEeeCCeEEEEEEe---C-CCCCchhhHHHHHHHHHHHHH
Q 004210 172 MHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHA---F-DESLGGRDFDEVLSSYFAAQF 247 (768)
Q Consensus 172 i~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~---~-~~~lGG~~~d~~l~~~l~~~~ 247 (768)
+..|+=..++|..+.. ..-.+++|.|+-.-|..+.|-. |++ +=+.. + -..++ --+|..++..+-..
T Consensus 129 ~aSpEKi~iay~a~~~----~~~~~~ivsDiSSNTVtlaVk~---GKI-VggidaciGAPG~lh-GpLDlE~ir~Id~g- 198 (326)
T TIGR03281 129 IASPEKVSIAYNAYCL----TGFKDFIVSDISSNTVTLLIKD---GKI-IGGFDACVGAPGVLH-GPLDLEAIRNIDAG- 198 (326)
T ss_pred cCCHHHHHHHHHHHHH----cCCCCEEEEecCCCeEEEEEEC---CEE-EccccccccCccccc-CcccHHHHHhcccC-
Confidence 4467777777766543 1236899999998888877653 332 11111 0 11122 34555555433210
Q ss_pred hhhcccCccCChHHHHHHHHHHHHHhhhccCCCcccEEEeccccCcceEEEecHHHHHHHHHH---HHHHHHHHHHHHHH
Q 004210 248 KQQYDIDVYTNVKASIRLRASCEKLKKVLSANAEAPLNIECLMNEKDVKGFIRREEFEKLSSS---LLERMRIPCQKALA 324 (768)
Q Consensus 248 ~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~i~i~~l~~~~d~~~~itr~~fe~~~~~---~~~~i~~~i~~~l~ 324 (768)
+.+ +-..||...- +.+-+++.+ ...++++|.+.+.. ....+..++.-+..
T Consensus 199 ------~~t---------------an~aFs~aGa--~kIa~~~~~----~~~~~eE~~~~~~~~e~~~lA~dal~~~vam 251 (326)
T TIGR03281 199 ------KKT---------------ANEAFSHAGA--VKIACADKG----VENAKEEILNNYNGDEPGRLALDSLAMSVAM 251 (326)
T ss_pred ------ccc---------------HHHHHhhcCe--eEEeccccc----ccCCHHHHHHHhccChhHHHHHHHHHHHHHH
Confidence 000 1112221111 112222221 14567777765532 22222222222211
Q ss_pred h-cCCCC--CCcCEEEEecC--CCChH-HHHHHHHhhcCCCCCCcCChhhHHHhHHHHHhhHhcCC
Q 004210 325 G-SGLNV--EKIHSVELVGS--GSRIP-AISRMLNSLFNREPGRTINASECVARGCALQCAMLSPQ 384 (768)
Q Consensus 325 ~-~~~~~--~~i~~V~LvGG--~srip-~v~~~l~~~fg~~v~~~~n~~eava~Gaa~~a~~ls~~ 384 (768)
. +.+.. .....|+|.|- ++|.| .+++.|++.|..++. .+.. ++.|.|+|+.|.-+.+.
T Consensus 252 eIasLl~l~~~~~~IvLSGs~g~~r~~~~v~~~I~~~L~~~V~-~L~~-ksAA~G~AiIA~dI~gG 315 (326)
T TIGR03281 252 EIASLGLLDCKEAGVVLAGSGGTLREPINFSGKIKRVLSCKVL-VLDS-ESAAIGLALIAEDIFSG 315 (326)
T ss_pred HHHhheeccCCCCcEEEeCcchhccCchHHHHHHHHHhCCCeE-Eecc-hhhhhhHHHHHHHHhCC
Confidence 1 11111 13458999997 99999 999999999985553 2333 78899999999877665
No 131
>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=78.67 E-value=6.1 Score=45.38 Aligned_cols=49 Identities=20% Similarity=0.525 Sum_probs=41.7
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccHHHHHHHHHHHHHHhhhhc-CC
Q 004210 683 SLPSKVRDAVIDECSKAEEWLREKVTQQDSLPKDADPILWSTEIKRKSEALDLTCKCIM-RS 743 (768)
Q Consensus 683 ~~~~ee~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~~~i~-kp 743 (768)
.+.++++.++.+.|+++..||+.... -...+++.|+++|+..|++++ +-
T Consensus 563 ~i~~~~~~~~~~~~~~~i~wl~~~~~------------~~~~e~e~k~~el~~~~~p~~~~~ 612 (620)
T KOG0101|consen 563 KINEEDKQKILDKCNEVINWLDKNQL------------AEKEEFEHKQKELELVCNPIISKL 612 (620)
T ss_pred ccChhhhhhHHHHHHHHHHHhhhccc------------ccccHHHHHHHHHHhhccHHHHhh
Confidence 48999999999999999999987221 116899999999999999999 63
No 132
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=78.36 E-value=17 Score=42.31 Aligned_cols=81 Identities=14% Similarity=0.192 Sum_probs=60.0
Q ss_pred HHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHhCC----CChhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccHHH
Q 004210 650 PIEGRYKDEEARAQATGALLKCAMDYRKVVEAHS----LPSKVRDAVIDECSKAEEWLREKVTQQDSLPKDADPILWSTE 725 (768)
Q Consensus 650 pi~~R~~e~~~rp~a~~~l~~~l~~~~~~~~~~~----~~~ee~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~d 725 (768)
.+..+=.+..+|..+.+.|...|-.++..+.+.. -+++|+..|.+.+.....||.+-..++.+ .+
T Consensus 648 d~~~~e~~k~~re~a~N~LE~~l~e~q~~l~d~ey~e~at~EEk~~L~~~~~~~~~Wleed~~~~~t-----------~~ 716 (902)
T KOG0104|consen 648 DFVQKEKEKSEREEASNELEAFLFELQDKLDDDEYAEVATEEEKKILKKKVSLLMDWLEEDGSQTPT-----------EM 716 (902)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCchHhhhcCHHHHHHHHHHHHHHHHHHHhhccccch-----------hH
Confidence 3444556667788888888888887777773322 68899999999999999999997732222 56
Q ss_pred HHHHHHHHHHHhhhhc
Q 004210 726 IKRKSEALDLTCKCIM 741 (768)
Q Consensus 726 i~~k~~~l~~~~~~i~ 741 (768)
+..|...|++.++.+.
T Consensus 717 ~~ek~a~L~~l~~~~~ 732 (902)
T KOG0104|consen 717 LTEKLAELKKLETSKN 732 (902)
T ss_pred HHHHHHHHHHHHhhhh
Confidence 7777777777776654
No 133
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=77.75 E-value=1.1e+02 Score=33.08 Aligned_cols=40 Identities=13% Similarity=0.159 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHhcCCCCCCcCEEEEecCCCChHHHHHHHHhhc
Q 004210 312 LERMRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLF 356 (768)
Q Consensus 312 ~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~f 356 (768)
++.+.+.+.++++.. .++.|+++||-+...++|++|++.+
T Consensus 248 ~~~L~~k~~~a~~~~-----~~~~lvv~GGVAaN~~LR~~l~~~~ 287 (345)
T PTZ00340 248 FAMLVEVTERAMSHC-----GSNEVLIVGGVGCNLRLQEMMQQMA 287 (345)
T ss_pred HHHHHHHHHHHHHHh-----CCCeEEEcCCHHHHHHHHHHHHHHH
Confidence 334444455555543 4678999999999999999999987
No 134
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=77.54 E-value=20 Score=42.60 Aligned_cols=45 Identities=18% Similarity=0.154 Sum_probs=39.1
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccHHHHHHHHHHHHHHhhhhc
Q 004210 682 HSLPSKVRDAVIDECSKAEEWLREKVTQQDSLPKDADPILWSTEIKRKSEALDLTCKCIM 741 (768)
Q Consensus 682 ~~~~~ee~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~~~i~ 741 (768)
..+++++++.+.+.+++++.||.+. ...+++.+.++|+..+.++.
T Consensus 589 ~~~s~~ere~i~~~l~~~~~WL~~~---------------d~~~i~~k~~eL~~~l~~l~ 633 (663)
T PTZ00400 589 DKISDADKDELKQKITKLRSTLSSE---------------DVDSIKDKTKQLQEASWKIS 633 (663)
T ss_pred hhCCHHHHHHHHHHHHHHHHHHhcC---------------CHHHHHHHHHHHHHHHHHHH
Confidence 3479999999999999999999751 24899999999999999888
No 135
>CHL00094 dnaK heat shock protein 70
Probab=77.16 E-value=13 Score=43.72 Aligned_cols=44 Identities=16% Similarity=0.102 Sum_probs=38.2
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccHHHHHHHHHHHHHHhhhhc
Q 004210 683 SLPSKVRDAVIDECSKAEEWLREKVTQQDSLPKDADPILWSTEIKRKSEALDLTCKCIM 741 (768)
Q Consensus 683 ~~~~ee~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~~~i~ 741 (768)
.+++++++.+...+++++.||.+. -..+++.+.+.|++.++++.
T Consensus 551 ~~~~~~~~~~~~~l~~~~~wl~~~---------------~~~~~~~~~~~l~~~~~~~~ 594 (621)
T CHL00094 551 KISEEKKEKIENLIKKLRQALQND---------------NYESIKSLLEELQKALMEIG 594 (621)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcC---------------CHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999761 11789999999999998888
No 136
>PLN02939 transferase, transferring glycosyl groups
Probab=76.57 E-value=1.3e+02 Score=36.90 Aligned_cols=179 Identities=10% Similarity=0.077 Sum_probs=106.2
Q ss_pred CCHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHHHHHHHhh--HhhccCCHHHHHHHHHHHHHHHHHHhhcCCCc
Q 004210 555 MTKTELSEAVEKEHQLVQQDLKMERTKDRKNALESYVYEMRDKISN--IYRSFATESEREGISRNLRDTEEWLYEDGDDE 632 (768)
Q Consensus 555 ls~~e~~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~--~~~~~~t~~e~~~l~~~l~~~~~WL~~~g~~a 632 (768)
+-+++++.++.++.+...-|+....++..+.-|++++-++..++-. .-...+++-+.+.+-++++..+.-|..-...+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (977)
T PLN02939 237 LLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKVENLQDLLDRATNQV 316 (977)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466788888888888888998899999999999999999998852 11122233333445566666665554321111
Q ss_pred c-HHHHHHHHHHHHHhHhHHHHh---hHhHHHHHHHHHHHHHHHHHHHHHHHhCC-CChhhHHHHHHHHHHHHHHHHHHH
Q 004210 633 S-ENVYAERLEDLKKLVDPIEGR---YKDEEARAQATGALLKCAMDYRKVVEAHS-LPSKVRDAVIDECSKAEEWLREKV 707 (768)
Q Consensus 633 ~-~~~~~~kl~~L~~~~~pi~~R---~~e~~~rp~a~~~l~~~l~~~~~~~~~~~-~~~ee~~~v~~~~~~~~~Wl~~~~ 707 (768)
. ....-++-++|++.++.++.- ..-++-++..++.+|+.+...+..+.... -....++--...++++++-|+...
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (977)
T PLN02939 317 EKAALVLDQNQDLRDKVDKLEASLKEANVSKFSSYKVELLQQKLKLLEERLQASDHEIHSYIQLYQESIKEFQDTLSKLK 396 (977)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 111223334444444444433 34455678888888888877766551100 011223444455666666676666
Q ss_pred Hhhhc----CCCCCCCcccHHHHHHHHHHH
Q 004210 708 TQQDS----LPKDADPILWSTEIKRKSEAL 733 (768)
Q Consensus 708 ~~q~~----~~~~~dP~~~~~di~~k~~~l 733 (768)
.++.+ .|.++-|.-.|.+|.-+++.+
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~lll~id~~ 426 (977)
T PLN02939 397 EESKKRSLEHPADDMPSEFWSRILLLIDGW 426 (977)
T ss_pred hhhhcccccCchhhCCHHHHHHHHHHHHHH
Confidence 66655 445566666677777766655
No 137
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=75.79 E-value=3.2 Score=48.68 Aligned_cols=42 Identities=14% Similarity=0.150 Sum_probs=29.8
Q ss_pred ceEeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEE
Q 004210 168 PLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVAS 213 (768)
Q Consensus 168 ~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~ 213 (768)
+..+.+-|.|-.++.++.-.. ..+ +++++||||.|||++++.
T Consensus 255 v~tI~SGPAagvvGAa~ltg~---~~g-~~i~~DmGGTStDva~i~ 296 (674)
T COG0145 255 VETILSGPAAGVVGAAYLTGL---KAG-NAIVFDMGGTSTDVALII 296 (674)
T ss_pred eeeEeeccHHHHHHHHHhccc---ccC-CEEEEEcCCcceeeeeee
Confidence 444677777777766554111 122 699999999999999987
No 138
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=75.43 E-value=2.6 Score=43.18 Aligned_cols=20 Identities=25% Similarity=0.506 Sum_probs=17.9
Q ss_pred EEEEEcCccceEEEEEEcCC
Q 004210 3 VVGFDIGNENCVIAAVKQGG 22 (768)
Q Consensus 3 viGID~Gtt~s~va~~~~~~ 22 (768)
++|||+|||++++++++..+
T Consensus 2 ~lgiDiGTts~K~~l~d~~g 21 (245)
T PF00370_consen 2 YLGIDIGTTSVKAVLFDEDG 21 (245)
T ss_dssp EEEEEECSSEEEEEEEETTS
T ss_pred EEEEEEcccceEEEEEeCCC
Confidence 79999999999999998554
No 139
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=75.38 E-value=8.1 Score=41.92 Aligned_cols=71 Identities=21% Similarity=0.184 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCcCEEEEecCCCChHHHHHHHHhhcCC-CC------CCcCChhhHHHhHHHHH
Q 004210 305 EKLSSSLLERMRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNR-EP------GRTINASECVARGCALQ 377 (768)
Q Consensus 305 e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~fg~-~v------~~~~n~~eava~Gaa~~ 377 (768)
+.++.-+..-+...|-+.++.... +++.|+++||+++.|++.+.|++.++. ++ ..+.+.-||++ -|++
T Consensus 260 ~D~~aTlt~~TA~sI~~~i~~~~~---~~~~v~v~GGGa~N~~L~~~L~~~l~~~~v~~~~~~gi~~~~~EA~a--FA~L 334 (364)
T PF03702_consen 260 EDILATLTEFTAQSIADAIRRFPP---QPDEVYVCGGGARNPFLMERLQERLPGIPVKTTDELGIPPDAKEAMA--FAWL 334 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-T---T-EEEEEESGGGG-HHHHHHHHHH-TTCEEEEGGGGTS-CCCHHHHH--HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC---CCceEEEECCCcCCHHHHHHHHhhCCCCEEecHHHcCCCHHHHHHHH--HHHH
Confidence 344455555555556666665432 378999999999999999999999963 43 23334555554 4556
Q ss_pred hhH
Q 004210 378 CAM 380 (768)
Q Consensus 378 a~~ 380 (768)
|..
T Consensus 335 a~~ 337 (364)
T PF03702_consen 335 AYR 337 (364)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 140
>COG2441 Predicted butyrate kinase [Energy production and conversion]
Probab=74.80 E-value=27 Score=35.66 Aligned_cols=48 Identities=25% Similarity=0.317 Sum_probs=32.7
Q ss_pred cEEEEEEeCCceEEEEEEEeeCCeEEEEEEeCC----CCCchhhHHHHHHHHHHH
Q 004210 195 TYVVFVDIGHCDTQVCVASYENGHMKILSHAFD----ESLGGRDFDEVLSSYFAA 245 (768)
Q Consensus 195 ~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~----~~lGG~~~d~~l~~~l~~ 245 (768)
-+++.+.+|-+-|-+-.+. +|++ |=+.+|. ..+||-.+|-.++-.+..
T Consensus 163 ~nfIavE~G~aytaavaV~--nGkI-VDGmgGttgf~gylg~g~MD~ElAYaLa~ 214 (374)
T COG2441 163 VNFIAVEIGFAYTAAVAVK--NGKI-VDGMGGTTGFTGYLGGGAMDGELAYALAN 214 (374)
T ss_pred hhhHHHhhhccceeEEEEE--CCEE-EeccCCccCcccccccccccHHHHHHHHH
Confidence 4567888888877655554 5555 4444443 379999999998866653
No 141
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=74.45 E-value=15 Score=39.00 Aligned_cols=53 Identities=17% Similarity=0.341 Sum_probs=38.4
Q ss_pred ecHHHHHHHHHHH----HHHHHHHHHHHHHhcCCCCCCcCEEEEecCCCChHHHHHHHHhhc
Q 004210 299 IRREEFEKLSSSL----LERMRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLF 356 (768)
Q Consensus 299 itr~~fe~~~~~~----~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~f 356 (768)
+..++.+.+|..+ ++-+....+++|+..+ .+.++++||-+....+|+++++..
T Consensus 229 ~~~~d~~dia~sfQ~av~~~L~~kt~rAl~~~~-----~~~lvi~GGVaaN~~LR~~l~~~~ 285 (342)
T COG0533 229 LNEEDKEDIAASFQEAVFDMLVEKTERALKHTG-----KKELVIAGGVAANSRLREMLEEMC 285 (342)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCEEEEeccHHHhHHHHHHHHHHH
Confidence 3445556666544 4555556677777765 556999999999999999999876
No 142
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=74.23 E-value=3 Score=38.52 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=19.6
Q ss_pred CeEEEEEcCccceEEEEEEcCC
Q 004210 1 MSVVGFDIGNENCVIAAVKQGG 22 (768)
Q Consensus 1 m~viGID~Gtt~s~va~~~~~~ 22 (768)
|.++|||+|+..+.+|+.++.+
T Consensus 4 ~~iLalD~G~kriGvAv~d~~~ 25 (138)
T PRK00109 4 GRILGLDVGTKRIGVAVSDPLG 25 (138)
T ss_pred CcEEEEEeCCCEEEEEEecCCC
Confidence 6799999999999999988754
No 143
>PLN02362 hexokinase
Probab=73.64 E-value=15 Score=41.83 Aligned_cols=35 Identities=17% Similarity=0.023 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHcCC--cceEeccchHHHHHHhhhc
Q 004210 151 DVQRRAYLDAATIAGL--KPLRLMHDCTATALGYGIY 185 (768)
Q Consensus 151 ~~qr~~l~~Aa~~AGl--~~~~li~Ep~Aaal~y~~~ 185 (768)
..-.+.|.+|...-|+ ++..|+|+.+|..++.++.
T Consensus 205 ~DVv~lL~~Al~r~~l~v~v~AlvNDTVgTL~a~aY~ 241 (509)
T PLN02362 205 KDVAECLQGALNRRGLDMRVAALVNDTVGTLALGHYH 241 (509)
T ss_pred chHHHHHHHHHHHcCCCcEEEEEEEcCHHHHHhhhcC
Confidence 3344556666655564 5788999999998876543
No 144
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=72.79 E-value=3.5 Score=38.01 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=19.6
Q ss_pred CeEEEEEcCccceEEEEEEcCC
Q 004210 1 MSVVGFDIGNENCVIAAVKQGG 22 (768)
Q Consensus 1 m~viGID~Gtt~s~va~~~~~~ 22 (768)
|.++||||||-.+.||+.+..+
T Consensus 2 ~~ilalD~G~KrIGvA~sd~~~ 23 (141)
T COG0816 2 MRILALDVGTKRIGVAVSDILG 23 (141)
T ss_pred ceEEEEecCCceEEEEEecCCC
Confidence 6899999999999999987654
No 145
>PLN03184 chloroplast Hsp70; Provisional
Probab=71.79 E-value=53 Score=39.12 Aligned_cols=44 Identities=16% Similarity=0.242 Sum_probs=34.1
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccHHHHHHHHHHHHHHhhhhc
Q 004210 683 SLPSKVRDAVIDECSKAEEWLREKVTQQDSLPKDADPILWSTEIKRKSEALDLTCKCIM 741 (768)
Q Consensus 683 ~~~~ee~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~~~i~ 741 (768)
.+++++++.+.+.+++++.||... | ..+++.+.++|.+.++++.
T Consensus 588 ~~~~eer~~l~~~l~~~e~wL~~~-----------d----~~~ik~~~~~l~~~l~~l~ 631 (673)
T PLN03184 588 KVPADVKEKVEAKLKELKDAIASG-----------S----TQKMKDAMAALNQEVMQIG 631 (673)
T ss_pred hCCHHHHHHHHHHHHHHHHHHhcC-----------C----HHHHHHHHHHHHHHHHHHH
Confidence 369999999999999999999751 2 2577777777777666665
No 146
>PRK02224 chromosome segregation protein; Provisional
Probab=71.62 E-value=2.6e+02 Score=34.59 Aligned_cols=116 Identities=20% Similarity=0.241 Sum_probs=59.3
Q ss_pred CCCHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHHHHHHHhhHhhccCCHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 004210 554 GMTKTELSEAVEKEHQLVQQDLKMERTKDRKNALESYVYEMRDKISNIYRSFATESEREGISRNLRDTEEWLYEDGDDES 633 (768)
Q Consensus 554 ~ls~~e~~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~t~~e~~~l~~~l~~~~~WL~~~g~~a~ 633 (768)
..++.+...+..++..+..-+.......+++..++...-.++..+.+ +...+...++..+...|...+.=+.+- ...
T Consensus 145 ~~~p~~R~~ii~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~l~~~l~~~~~~l~el--~~~ 221 (880)
T PRK02224 145 NATPSDRQDMIDDLLQLGKLEEYRERASDARLGVERVLSDQRGSLDQ-LKAQIEEKEEKDLHERLNGLESELAEL--DEE 221 (880)
T ss_pred cCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH
Confidence 36788888888888877666655555566566666666666666653 222333344455555555555544331 112
Q ss_pred HHHHHHHHHHHHHhHhHHHHhhHhHHHHHHHHHHHHHHH
Q 004210 634 ENVYAERLEDLKKLVDPIEGRYKDEEARAQATGALLKCA 672 (768)
Q Consensus 634 ~~~~~~kl~~L~~~~~pi~~R~~e~~~rp~a~~~l~~~l 672 (768)
.+....++..++.-...+..++.+....-..+..+...+
T Consensus 222 i~~~~~~~~~l~~~l~~l~~~~~el~~~~~~l~~l~~~~ 260 (880)
T PRK02224 222 IERYEEQREQARETRDEADEVLEEHEERREELETLEAEI 260 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223333333333333333344444444333344433333
No 147
>PRK00976 hypothetical protein; Provisional
Probab=70.48 E-value=26 Score=37.18 Aligned_cols=51 Identities=22% Similarity=0.244 Sum_probs=39.2
Q ss_pred CcCEEEEecCCCChH--HHHHHHHhhcCCCCCCcCChhhHHHhHHHHHhhHhcCC
Q 004210 332 KIHSVELVGSGSRIP--AISRMLNSLFNREPGRTINASECVARGCALQCAMLSPQ 384 (768)
Q Consensus 332 ~i~~V~LvGG~srip--~v~~~l~~~fg~~v~~~~n~~eava~Gaa~~a~~ls~~ 384 (768)
+.+.|+|-||-++.+ .+.+.+++.+... ...-..++.++|||+.|..+.+.
T Consensus 263 DPe~IVLGGGVS~~~e~~L~~~I~e~l~~~--~a~LG~dAGaiGAA~iA~~i~~G 315 (326)
T PRK00976 263 PEDNVVLAGSVGEMDEPDVSERIKELLDKK--VLVLGKESAAIGLALIARDIFNG 315 (326)
T ss_pred CCCEEEEcCccccCchhHHHHHHHHHhccc--ccccCCchHHHHHHHHHHHHhCC
Confidence 477899999999998 7888888888543 22334588999999988776443
No 148
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=70.23 E-value=1.3e+02 Score=30.68 Aligned_cols=89 Identities=16% Similarity=0.198 Sum_probs=54.9
Q ss_pred eCCCCCHHHHHHHHHHHHH---cCCcceEeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEeeCCeEEE
Q 004210 145 VPCYLTDVQRRAYLDAATI---AGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKI 221 (768)
Q Consensus 145 VP~~~~~~qr~~l~~Aa~~---AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~v 221 (768)
+|.+|+. |+.|+.. +|-. ..+++.-.||+....+.- .....||+|+|-|++..+++. .+.+.-
T Consensus 186 iPe~FtR-----Mraaa~sal~~~t~-av~mDskfaav~gal~dp------aa~palvVd~GngHttaalvd--edRI~g 251 (342)
T COG4012 186 IPESFTR-----MRAAAMSALSAGTD-AVAMDSKFAAVMGALVDP------AADPALVVDYGNGHTTAALVD--EDRIVG 251 (342)
T ss_pred CchhHHH-----HHHHHHHHHhcCce-EEEEcchhHhhhhcccCc------ccCceEEEEccCCceEEEEec--CCeEEE
Confidence 5666652 3343332 3333 456677777776665543 234799999999999999875 345554
Q ss_pred EEEeCCCCCchhhHHHHHHHHHHHHH
Q 004210 222 LSHAFDESLGGRDFDEVLSSYFAAQF 247 (768)
Q Consensus 222 l~~~~~~~lGG~~~d~~l~~~l~~~~ 247 (768)
+...-...+.-..|-..|.++..-++
T Consensus 252 v~EHHT~~Lspekled~I~rf~~GeL 277 (342)
T COG4012 252 VYEHHTIRLSPEKLEDQIIRFVEGEL 277 (342)
T ss_pred EeecccccCCHHHHHHHHHHHHhccc
Confidence 44444566666666666665555443
No 149
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=68.80 E-value=60 Score=30.53 Aligned_cols=142 Identities=14% Similarity=0.104 Sum_probs=74.2
Q ss_pred EEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCCchhhHHHHHHHHHHHHHhhhcccCccCChHHHHHHHHHHHHHhhhc
Q 004210 197 VVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEVLSSYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVL 276 (768)
Q Consensus 197 vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~L 276 (768)
||=+|.|-.+|-.++++..++.++++..+--..-.+...-.+ +..+....+++-...
T Consensus 2 ILGIDPGl~~~G~av~~~~~~~~~~~~~g~i~t~~~~~~~~r-----------------------l~~I~~~l~~~i~~~ 58 (154)
T cd00529 2 ILGIDPGSRNTGYGVIEQEGRKLIYLASGVIRTSSDAPLPSR-----------------------LKTIYDGLNEVIDQF 58 (154)
T ss_pred EEEEccCcCceEEEEEEeeCCeEEEEEeeEEECCCCCCHHHH-----------------------HHHHHHHHHHHHHHh
Confidence 688999999999999998888777776652211111111111 111222222222222
Q ss_pred cCCCcccEEEeccccCcceEEEecHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----CCCcCEEEEecCCCChHHHHHH
Q 004210 277 SANAEAPLNIECLMNEKDVKGFIRREEFEKLSSSLLERMRIPCQKALAGSGLN-----VEKIHSVELVGSGSRIPAISRM 351 (768)
Q Consensus 277 s~~~~~~i~i~~l~~~~d~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~-----~~~i~~V~LvGG~srip~v~~~ 351 (768)
. . ..+.+|..+=+.. .+..+ .+..+...+..++...+++ +..+...+.-=|.+.=--|+.+
T Consensus 59 ~--P-d~vaiE~~~~~~n---------~~s~~--~l~~~~Gvi~~~~~~~~i~v~e~~P~~vKk~~tG~G~A~KeqV~~m 124 (154)
T cd00529 59 Q--P-DVVAIERVFFAKN---------PDSAL--KLGQARGALILALANRNLPVFEYTPNQVKKAVTGYGKADKDQVQHM 124 (154)
T ss_pred C--C-CEEEEEEhhcccC---------hHHHH--HHHHHHHHHHHHHHHcCCCEEEEccCeeEEEEECCCCCCHHHHHHH
Confidence 1 1 2355554321111 11111 2344556666666666654 4445544433355666689999
Q ss_pred HHhhcCCCCC-CcCChhhHHHhHHH
Q 004210 352 LNSLFNREPG-RTINASECVARGCA 375 (768)
Q Consensus 352 l~~~fg~~v~-~~~n~~eava~Gaa 375 (768)
++..++.... .+.|.-.|.|.+.|
T Consensus 125 v~~~l~~~~~~~~~d~aDAlaiA~~ 149 (154)
T cd00529 125 VKRLLNLSEIPKPDDAADALAVAIT 149 (154)
T ss_pred HHHHhCCCCCCCCCCHHHHHHHHHH
Confidence 9999985442 34455555555543
No 150
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=68.64 E-value=2.1e+02 Score=34.40 Aligned_cols=12 Identities=17% Similarity=0.205 Sum_probs=7.9
Q ss_pred eEEEEeCCCCCH
Q 004210 140 NCVIGVPCYLTD 151 (768)
Q Consensus 140 ~~VitVP~~~~~ 151 (768)
-+|+-+|..|+.
T Consensus 107 v~V~~LP~r~g~ 118 (717)
T PF10168_consen 107 VVVLELPRRWGK 118 (717)
T ss_pred EEEEEeccccCc
Confidence 466777877753
No 151
>PRK07058 acetate kinase; Provisional
Probab=68.36 E-value=32 Score=37.57 Aligned_cols=47 Identities=15% Similarity=0.101 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCcCEEEEecCCC-ChHHHHHHHHhhcC
Q 004210 307 LSSSLLERMRIPCQKALAGSGLNVEKIHSVELVGSGS-RIPAISRMLNSLFN 357 (768)
Q Consensus 307 ~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~s-rip~v~~~l~~~fg 357 (768)
.++-++.++.+.|-......| .+|.|+++||-+ ..+.|++.+.+.++
T Consensus 297 A~d~f~yri~k~IGa~~a~Lg----~vDaiVfTGGIgEns~~vr~~i~~~l~ 344 (396)
T PRK07058 297 ALDLFALRIAGEIARLAATLG----GLDAVVFTAGIGEHQPAIRAAVCERLA 344 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHhC----CCCEEEECCccccCcHHHHHHHHhhhh
Confidence 344455566666655544433 699999999999 99999999998774
No 152
>PLN02405 hexokinase
Probab=68.28 E-value=33 Score=38.98 Aligned_cols=58 Identities=22% Similarity=0.193 Sum_probs=35.5
Q ss_pred CHHHHHHHHHHHHHcCCc--ceEeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEe
Q 004210 150 TDVQRRAYLDAATIAGLK--PLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASY 214 (768)
Q Consensus 150 ~~~qr~~l~~Aa~~AGl~--~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~ 214 (768)
...-.+.|.+|.+.-|++ +..|+|+.++..++.++.. +...+=+=+|-||=-+.+-+.
T Consensus 204 G~DVv~lL~~Al~r~~l~v~v~AlvNDTVGTL~a~aY~~-------~~~~iG~IlGTGtNacY~E~~ 263 (497)
T PLN02405 204 GQDVVGELTKAMERVGLDMRVSALVNDTIGTLAGGRYYN-------PDVVAAVILGTGTNAAYVERA 263 (497)
T ss_pred CchHHHHHHHHHHHcCCCceEEEEEecCHHHHHHhhcCC-------CCceEEEEEeCCeeeEEEeec
Confidence 334456666666666664 7889999999988766543 223333335777655554433
No 153
>PF02543 CmcH_NodU: Carbamoyltransferase; InterPro: IPR003696 The putative O-carbamoyltransferases (O-Cases) encoded by the nodU genes of Rhizobium fredii and Bradyrhizobium japonicum are involved in the synthesis of nodulation factors []. The cmcH genes of Nocardia lactamdurans and Streptomyces clavuligerus encode a functional 3'-hydroxymethylcephem O-carbamoyltransferase 2.1.3.7 from EC for cephamycin biosynthesis that shows significant similarity to the O-carbamoyltransferases [].; GO: 0003824 catalytic activity, 0009058 biosynthetic process; PDB: 3VES_A 3VER_A 3VEN_A 3VF2_A 3VEX_A 3VEW_A 3VET_A 3VEO_A 3VEZ_A 3VF4_A.
Probab=67.78 E-value=14 Score=40.24 Aligned_cols=81 Identities=16% Similarity=0.044 Sum_probs=55.2
Q ss_pred EecHHHHHHHHHHHHHHHH-HHHHHHHHhcCCCCCCcCE-EEEecCCCChHHHHHHHHhhcC-CCCCCcCC-hhhHHHhH
Q 004210 298 FIRREEFEKLSSSLLERMR-IPCQKALAGSGLNVEKIHS-VELVGSGSRIPAISRMLNSLFN-REPGRTIN-ASECVARG 373 (768)
Q Consensus 298 ~itr~~fe~~~~~~~~~i~-~~i~~~l~~~~~~~~~i~~-V~LvGG~srip~v~~~l~~~fg-~~v~~~~n-~~eava~G 373 (768)
.-.+.++-..++..++++. ..++.++++.+ ++. |.|.||....-..-..|.+..+ .++..++- .|..+|+|
T Consensus 132 ~~~~~dlAa~~Q~~~E~~v~~~~~~~~~~~g-----~~~~L~laGGvaLN~~~N~~l~~~~~~~~v~V~Pa~gD~G~aiG 206 (360)
T PF02543_consen 132 TQRHADLAASAQKVLEEIVLHLVRHLLERTG-----IDNNLCLAGGVALNCKANGRLLEEPGFDNVFVPPAAGDAGLAIG 206 (360)
T ss_dssp ESS-HHHHHHHHHHHHHHHHHHHHHHHHHHT-------SEEEEESGGGG-HHHHHHHHTSTT-SEEE--TTTSGGGHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCeEEEechHHHHHHHHHHHHhcCCCCeEEECCCCCCcchHHH
Confidence 4567777777777776654 56667777766 445 9999999888888888887755 34544444 48999999
Q ss_pred HHHHhhHhcC
Q 004210 374 CALQCAMLSP 383 (768)
Q Consensus 374 aa~~a~~ls~ 383 (768)
||+++.....
T Consensus 207 aA~~~~~~~~ 216 (360)
T PF02543_consen 207 AALYAWHELG 216 (360)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHhc
Confidence 9999986543
No 154
>PTZ00107 hexokinase; Provisional
Probab=67.78 E-value=20 Score=40.38 Aligned_cols=38 Identities=13% Similarity=0.071 Sum_probs=26.2
Q ss_pred CCHHHHHHHHHHHHHcCC--cceEeccchHHHHHHhhhcc
Q 004210 149 LTDVQRRAYLDAATIAGL--KPLRLMHDCTATALGYGIYK 186 (768)
Q Consensus 149 ~~~~qr~~l~~Aa~~AGl--~~~~li~Ep~Aaal~y~~~~ 186 (768)
-+..-.+.|.+|...-|+ +++.++|+.+|+.++.++..
T Consensus 192 ~G~DV~~lL~~Al~r~~l~v~v~AivNDTVgTL~a~ay~~ 231 (464)
T PTZ00107 192 EGKDVGELLNDAFKRNNVPANVVAVLNDTVGTLISCAYQK 231 (464)
T ss_pred cCchHHHHHHHHHHHcCCCceEEEEEEcCHHHHHHHHhcC
Confidence 344445566666666565 47899999999988776643
No 155
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=66.97 E-value=66 Score=32.87 Aligned_cols=93 Identities=19% Similarity=0.165 Sum_probs=54.8
Q ss_pred cCCCCeEEE--EeCCCCCHHHHHHHHHHHHHcCCcceEeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEE
Q 004210 135 KIPISNCVI--GVPCYLTDVQRRAYLDAATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVA 212 (768)
Q Consensus 135 ~~~~~~~Vi--tVP~~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~ 212 (768)
+..+...+. .+|.+|+- -+++++++.-.|.+. .+++-..||.+....+.. ......++++|+|-|+|-++++
T Consensus 111 g~~~~~~~y~~~~P~~~TR--m~av~~~~~~~~~~~-~vmDTg~AAvlGal~d~~---v~~~~~~~~vniGN~HTlaa~v 184 (254)
T PF08735_consen 111 GGRPESFVYADDPPPYFTR--MRAVRESLGGAGYDE-VVMDTGPAAVLGALCDPE---VSSREGIIVVNIGNGHTLAALV 184 (254)
T ss_pred CCCHHHeeecCCCcHHHHH--HHHHHHHhccCCCCc-eEecCHHHHHhhhhcChh---hhccCCeEEEEeCCccEEEEEE
Confidence 445677777 88988763 355666666666666 444444444444333221 1235679999999999998888
Q ss_pred EeeCCeEEEEEEeCCCCCchhhH
Q 004210 213 SYENGHMKILSHAFDESLGGRDF 235 (768)
Q Consensus 213 ~~~~~~~~vl~~~~~~~lGG~~~ 235 (768)
. ++.+.=+...-...+-...+
T Consensus 185 ~--~~rI~GvfEHHT~~l~~~kL 205 (254)
T PF08735_consen 185 K--DGRIYGVFEHHTGMLTPEKL 205 (254)
T ss_pred e--CCEEEEEEecccCCCCHHHH
Confidence 3 44443333333334444433
No 156
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=66.39 E-value=2.6e+02 Score=32.57 Aligned_cols=16 Identities=13% Similarity=-0.004 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHhh
Q 004210 612 EGISRNLRDTEEWLYE 627 (768)
Q Consensus 612 ~~l~~~l~~~~~WL~~ 627 (768)
+++.+.+..+..-|++
T Consensus 225 e~i~~~~~~~~~~L~~ 240 (563)
T TIGR00634 225 EKLRELSQNALAALRG 240 (563)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 4455555555555654
No 157
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=66.16 E-value=13 Score=44.41 Aligned_cols=48 Identities=15% Similarity=0.051 Sum_probs=37.8
Q ss_pred CcCEEEEecCCCChHHHHHHHHhhcC---CCCCCcC---ChhhHHHhHHHHHhh
Q 004210 332 KIHSVELVGSGSRIPAISRMLNSLFN---REPGRTI---NASECVARGCALQCA 379 (768)
Q Consensus 332 ~i~~V~LvGG~srip~v~~~l~~~fg---~~v~~~~---n~~eava~Gaa~~a~ 379 (768)
.++.|+|+||......+.+.|.+.++ .++..+. -.|.++++|.|++|+
T Consensus 658 g~~~VvLSGGVfqN~~L~~~L~~~L~~~g~~v~~p~~~p~nDgGislGQa~~a~ 711 (711)
T TIGR00143 658 GIHKIVISGGVFYNRLLLERLAKYLKGLGFQFLFHRHLPPGDGGISLGQAVAAA 711 (711)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHhCCCEEEccCCCCCCHHHHHHHHHHHhC
Confidence 46789999999999999999988773 3443332 348999999998874
No 158
>PLN02914 hexokinase
Probab=66.07 E-value=39 Score=38.26 Aligned_cols=58 Identities=19% Similarity=0.163 Sum_probs=34.9
Q ss_pred CHHHHHHHHHHHHHcCC--cceEeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEe
Q 004210 150 TDVQRRAYLDAATIAGL--KPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASY 214 (768)
Q Consensus 150 ~~~qr~~l~~Aa~~AGl--~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~ 214 (768)
+..-.+.|.+|.+.-|+ ++..|+|+.+|..++.++.. +...+=+=+|-||=-+.+-++
T Consensus 204 G~DVv~lL~~Al~r~~l~v~v~AivNDTVGTL~a~aY~~-------~~~~iGlIlGTGtNacY~E~~ 263 (490)
T PLN02914 204 GKDVVACLNEAMERQGLDMRVSALVNDTVGTLAGARYWD-------DDVMVAVILGTGTNACYVERT 263 (490)
T ss_pred CchHHHHHHHHHHHcCCCceEEEEEEcCHHHHHhhhcCC-------CCceEEEEEECCeeeEEEeec
Confidence 33344566666655554 57889999999988766543 223333335777665555444
No 159
>cd06007 R3H_DEXH_helicase R3H domain of a group of proteins which also contain a DEXH-box helicase domain, and may function as ATP-dependent DNA or RNA helicases. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=65.60 E-value=17 Score=28.04 Aligned_cols=29 Identities=28% Similarity=0.266 Sum_probs=26.8
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHHHcCCcc
Q 004210 140 NCVIGVPCYLTDVQRRAYLDAATIAGLKP 168 (768)
Q Consensus 140 ~~VitVP~~~~~~qr~~l~~Aa~~AGl~~ 168 (768)
...++.|+.++..+|..+-+.|...||..
T Consensus 16 ~~~l~Fpp~ls~~eR~~vH~~a~~~gL~s 44 (59)
T cd06007 16 NEEYEFPSSLTNHERAVIHRLCRKLGLKS 44 (59)
T ss_pred ccEEEcCCCCCHHHHHHHHHHHHHcCCCc
Confidence 67789999999999999999999999875
No 160
>PRK03011 butyrate kinase; Provisional
Probab=65.40 E-value=23 Score=38.48 Aligned_cols=45 Identities=13% Similarity=0.099 Sum_probs=36.4
Q ss_pred CcCEEEEecCCCChHHHHHHHHhhcC----CCCCCcCChhhHHHhHHHH
Q 004210 332 KIHSVELVGSGSRIPAISRMLNSLFN----REPGRTINASECVARGCAL 376 (768)
Q Consensus 332 ~i~~V~LvGG~srip~v~~~l~~~fg----~~v~~~~n~~eava~Gaa~ 376 (768)
+++.|+|.||.+..+.+.+.|.+.+. ..+....+-.+|.+.||+.
T Consensus 295 dpD~IVlgGGI~~~~~l~~~I~~~l~~~~pv~i~p~~~e~~A~a~GA~r 343 (358)
T PRK03011 295 KVDAIVLTGGLAYSKRLVERIKERVSFIAPVIVYPGEDEMEALAEGALR 343 (358)
T ss_pred CCCEEEEeCccccCHHHHHHHHHHHHhhCCeEEEeCCCHHHHHHHHHHH
Confidence 68999999999999999988888774 3455566777899999864
No 161
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=64.79 E-value=5.1 Score=45.93 Aligned_cols=20 Identities=15% Similarity=0.278 Sum_probs=18.0
Q ss_pred EEEEEcCccceEEEEEEcCC
Q 004210 3 VVGFDIGNENCVIAAVKQGG 22 (768)
Q Consensus 3 viGID~Gtt~s~va~~~~~~ 22 (768)
++|||+|||++++++++..+
T Consensus 4 ~lgiDiGTts~Ka~l~d~~G 23 (504)
T PTZ00294 4 IGSIDQGTTSTRFIIFDEKG 23 (504)
T ss_pred EEEEecCCCceEEEEECCCC
Confidence 79999999999999998654
No 162
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=63.88 E-value=20 Score=35.55 Aligned_cols=53 Identities=15% Similarity=0.289 Sum_probs=33.7
Q ss_pred CCcEEEEEEeCCceEEEEEEEeeCC-eEEEEEEeCCCC---CchhhHHHHHHHHHHHHH
Q 004210 193 GPTYVVFVDIGHCDTQVCVASYENG-HMKILSHAFDES---LGGRDFDEVLSSYFAAQF 247 (768)
Q Consensus 193 ~~~~vlv~D~GggT~dvsv~~~~~~-~~~vl~~~~~~~---lGG~~~d~~l~~~l~~~~ 247 (768)
..+.+|++|+||.++-+++|++.++ .+++....+..+ .-|.. ..|++|+++.+
T Consensus 61 E~G~~LalDlGGTnlRv~~V~L~g~~~~~~~~~~~~ip~~~~~~~~--~~lFd~ia~~i 117 (206)
T PF00349_consen 61 EKGDFLALDLGGTNLRVALVELSGNGKVEIEQEKYKIPEELMNGSG--EELFDFIADCI 117 (206)
T ss_dssp TEEEEEEEEESSSSEEEEEEEEESSSEEEEEEEEEE--HHHHTSBH--HHHHHHHHHHH
T ss_pred CCceEEEEeecCcEEEEEEEEEcCCCCceeeeccccCChHHhcCCc--ccHHHHHHHHH
Confidence 4567999999999999999999876 444433322222 11111 55667776544
No 163
>KOG1385 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=63.83 E-value=20 Score=38.80 Aligned_cols=77 Identities=14% Similarity=0.268 Sum_probs=43.8
Q ss_pred eEecHHHHHHHHHHHHHHHHHhhccCCC-CeEEEEeCCCCCHHHHHHHHHHHHHcCCcceEeccchHHH--HHHhhhccc
Q 004210 111 HKFTPVQILGMLLSNLKQITEKNIKIPI-SNCVIGVPCYLTDVQRRAYLDAATIAGLKPLRLMHDCTAT--ALGYGIYKT 187 (768)
Q Consensus 111 ~~~~~~el~a~~L~~l~~~a~~~~~~~~-~~~VitVP~~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aa--al~y~~~~~ 187 (768)
..+.+.+-...+|+.+++..+....-.+ .++ |+|= .=.+|..-| .++|....
T Consensus 152 LRlL~~~ka~~IL~aVre~l~~~s~f~v~~d~-VsIm-----------------------~GtdEGv~aWiTiN~Llg~- 206 (453)
T KOG1385|consen 152 LRLLPGSKADNILQAVRELLKNDSPFPVVEDA-VSIM-----------------------DGTDEGVYAWITINYLLGT- 206 (453)
T ss_pred cccCChhHHHHHHHHHHHHHhccCCccccCCc-eeec-----------------------cCcccceeeeeehhhhhcc-
Confidence 3577888889999999988763221111 111 1111 111222221 23454432
Q ss_pred CCCCCCCcEEEEEEeCCceEEEEEEE
Q 004210 188 DFSNVGPTYVVFVDIGHCDTQVCVAS 213 (768)
Q Consensus 188 ~~~~~~~~~vlv~D~GggT~dvsv~~ 213 (768)
+.......+.++|+|||+|+++..-
T Consensus 207 -L~~~~~~tvgv~DLGGGSTQi~f~p 231 (453)
T KOG1385|consen 207 -LGAPGHRTVGVVDLGGGSTQITFLP 231 (453)
T ss_pred -cCCCCCCceEEEEcCCceEEEEEec
Confidence 2223367899999999999998875
No 164
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=62.63 E-value=54 Score=38.48 Aligned_cols=67 Identities=22% Similarity=0.326 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhC--CCChhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccHHHHHHHHHHHHHHhh
Q 004210 661 RAQATGALLKCAMDYRKVVEAH--SLPSKVRDAVIDECSKAEEWLREKVTQQDSLPKDADPILWSTEIKRKSEALDLTCK 738 (768)
Q Consensus 661 rp~a~~~l~~~l~~~~~~~~~~--~~~~ee~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~~ 738 (768)
+-.+.+.+.+.+...+..+... .+++++. .+.+++...||.+....-. ..++..|+++|++.++
T Consensus 529 ~~e~kn~lE~~i~~~r~~l~~~~~~~~~~~~---~~~l~~~~~wl~~~~~~~~-----------~~e~~~kl~~L~~~~~ 594 (602)
T PF00012_consen 529 RAEAKNELESYIYELRDKLEEDKDFVSEEEK---KKKLKETSDWLEDNGEDAD-----------KEEYKEKLEELKKVIE 594 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCGGGSTHHHH---HHHHHHHHHHHHHHTTTSH-----------HHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHhhhccCCHHHH---HHHHHHHHHHHHhhccCCC-----------HHHHHHHHHHHHHHHH
Confidence 3344455555555555555221 2555555 6788889999999664222 6899999999999999
Q ss_pred hhc
Q 004210 739 CIM 741 (768)
Q Consensus 739 ~i~ 741 (768)
+|.
T Consensus 595 ~i~ 597 (602)
T PF00012_consen 595 PIK 597 (602)
T ss_dssp HHH
T ss_pred HHH
Confidence 887
No 165
>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.21 E-value=1.6e+02 Score=28.74 Aligned_cols=130 Identities=18% Similarity=0.218 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHhHhHHHHhhHhHH---HHHHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHHHHHHHhh
Q 004210 634 ENVYAERLEDLKKLVDPIEGRYKDEE---ARAQATGALLKCAMDYRKVVEAHSLPSKVRDAVIDECSKAEEWLREKVTQQ 710 (768)
Q Consensus 634 ~~~~~~kl~~L~~~~~pi~~R~~e~~---~rp~a~~~l~~~l~~~~~~~~~~~~~~ee~~~v~~~~~~~~~Wl~~~~~~q 710 (768)
+..|++.|..+.....-|.+-..-.+ .--+.+..++..-...++.. .+++-..+..+.+.|.+-+.-.++.....
T Consensus 70 KK~~E~qL~qidG~l~tie~Qr~alEnA~~n~Evl~~m~~~A~AmK~~h--~~mDiDkVdd~MdeI~eQqe~a~eIseAi 147 (221)
T KOG1656|consen 70 KKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLDAMGSAAKAMKAAH--KNMDIDKVDDLMDEIAEQQEVAEEISEAI 147 (221)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHH--hccChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777666665322222 22334444444444444444 55788888999999988877776665544
Q ss_pred hcCCCCCCCcccHHHHHHHHHHHHHH--hhhhc-CCCCCCCCCCC-------CCCcccccCCCCCC
Q 004210 711 DSLPKDADPILWSTEIKRKSEALDLT--CKCIM-RSNPSVPIRDD-------ANDSDRKRKSDHME 766 (768)
Q Consensus 711 ~~~~~~~dP~~~~~di~~k~~~l~~~--~~~i~-kpkPk~~~~~~-------~~~~~~~~~~~~~~ 766 (768)
.. |.--.-.|--.|+...+++|+.. =+.++ .+.|.|+-|+- .+++.|+-.+++-+
T Consensus 148 S~-Pvg~~a~~DEDEL~~ELdeLeqeeld~~ll~~~~p~v~LP~vPs~~lPa~~~~~~~a~E~d~~ 212 (221)
T KOG1656|consen 148 SA-PVGFGADFDEDELMAELDELEQEELDKELLDIRAPPVPLPDVPSIALPAKPASRPKAEEDDDD 212 (221)
T ss_pred hC-ccccccccCHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCccccCcccccCCCcchhhhH
Confidence 33 33211127778999999999853 35555 34443333221 23555555555543
No 166
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=61.85 E-value=2.2e+02 Score=30.17 Aligned_cols=39 Identities=23% Similarity=0.295 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHhcCCCCCCcCEEEEecCCCChHHHHHHHHhhc
Q 004210 313 ERMRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLF 356 (768)
Q Consensus 313 ~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~f 356 (768)
+-+...++++++.. .++.|+|.||......+++.|.+.+
T Consensus 244 ~~l~~~~~~~~~~~-----g~~~vvlsGGVa~N~~L~~~l~~~~ 282 (305)
T TIGR00329 244 DHLIEKTKRALKDT-----GPKELVLVGGVSANKRLREMLETLC 282 (305)
T ss_pred HHHHHHHHHHHHHc-----CCCEEEEECCHHHHHHHHHHHHHHH
Confidence 33444555555543 4678999999999999999998887
No 167
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=61.80 E-value=3.7e+02 Score=32.81 Aligned_cols=49 Identities=16% Similarity=0.188 Sum_probs=25.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccHHHHHHHHHHHHHHhhhhc
Q 004210 687 KVRDAVIDECSKAEEWLREKVTQQDSLPKDADPILWSTEIKRKSEALDLTCKCIM 741 (768)
Q Consensus 687 ee~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~~~i~ 741 (768)
..+++|.+.+.+.+.-|... .|+|.+-+=+-+....++..|++..+-|+
T Consensus 328 ~~l~~~~~ki~e~~~EL~~I------~Pky~~l~~ee~~~~~rl~~l~~~~~~l~ 376 (1200)
T KOG0964|consen 328 HVLQKVKDKIEEKKDELSKI------EPKYNSLVDEEKRLKKRLAKLEQKQRDLL 376 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHh------hhHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555554444443 33444444444556666666666555555
No 168
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=61.70 E-value=2.3e+02 Score=30.31 Aligned_cols=52 Identities=19% Similarity=0.117 Sum_probs=36.2
Q ss_pred HHHHHHHHhcCCCCCCcCEEEEecCCCChHHHHHHHHhhc---CCCCCCcC---ChhhHHHhH
Q 004210 317 IPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLF---NREPGRTI---NASECVARG 373 (768)
Q Consensus 317 ~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~f---g~~v~~~~---n~~eava~G 373 (768)
..++++++..+ +..|+|.||.+....+.+.|.+.+ |.++..+. -.|.++++|
T Consensus 232 ~~a~~~~~~~g-----~~~lvlsGGVa~N~~L~~~l~~~l~~~g~~v~~~~~~p~~D~Gi~Ig 289 (322)
T TIGR03722 232 EVTERALAHTG-----KKEVLLVGGVAANRRLREMLELMAEDRGAKFYVPPPEYAGDNGAMIA 289 (322)
T ss_pred HHHHHHHHHhC-----CCeEEEeccHHHHHHHHHHHHHHHHHCCCEEEcCCCCCCchHHHHHH
Confidence 34444444433 567999999999999999999865 44443333 247888888
No 169
>cd02640 R3H_NRF R3H domain of the NF-kappaB-repression factor (NRF). NRF is a nuclear inhibitor of NF-kappaB proteins that can silence the IFNbeta promoter via binding to a negative regulatory element (NRE). Beside R3H NRF also contains a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=60.14 E-value=26 Score=27.13 Aligned_cols=30 Identities=17% Similarity=0.036 Sum_probs=27.3
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHcCCcc
Q 004210 139 SNCVIGVPCYLTDVQRRAYLDAATIAGLKP 168 (768)
Q Consensus 139 ~~~VitVP~~~~~~qr~~l~~Aa~~AGl~~ 168 (768)
....++.|+.++..+|..+-+.|+..||..
T Consensus 16 ~~~~l~f~p~lt~~eR~~vH~~a~~~gL~s 45 (60)
T cd02640 16 DIRDMVFSPEFSKEERALIHQIAQKYGLKS 45 (60)
T ss_pred ccceEEcCCCCCHHHHHHHHHHHHHcCCce
Confidence 467789999999999999999999999985
No 170
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=59.42 E-value=2.2e+02 Score=29.41 Aligned_cols=93 Identities=19% Similarity=0.322 Sum_probs=44.9
Q ss_pred CHHHHHHHHHHHHHHHHHHhhc-----CC----CccHHHHHHHHHHHHHhHhHHHHhhHhHHHHHHHHHHHHHHHHHHHH
Q 004210 607 TESEREGISRNLRDTEEWLYED-----GD----DESENVYAERLEDLKKLVDPIEGRYKDEEARAQATGALLKCAMDYRK 677 (768)
Q Consensus 607 t~~e~~~l~~~l~~~~~WL~~~-----g~----~a~~~~~~~kl~~L~~~~~pi~~R~~e~~~rp~a~~~l~~~l~~~~~ 677 (768)
-+.|..+....|+.+..|+... +- .-...+|..||.+|+.+.+-......+....-.........+..-..
T Consensus 151 Ae~El~~A~~LL~~v~~~~~~~~~~~~~l~~~i~~~L~~~~~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~ 230 (264)
T PF06008_consen 151 AEDELKEAEDLLSRVQKWFQKPQQENESLAEAIRDDLNDYNAKLQDLRDLLNEAQNKTREAEDLNRANQKNLEDLEKKKQ 230 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666667777777776221 00 01224566666666666655555555544444433333322222222
Q ss_pred HHHhCCCChhhHHHHHHHHHHHHHHHHH
Q 004210 678 VVEAHSLPSKVRDAVIDECSKAEEWLRE 705 (768)
Q Consensus 678 ~~~~~~~~~ee~~~v~~~~~~~~~Wl~~ 705 (768)
.+ .+....+...+.+...+|.+
T Consensus 231 ~l------~~~~~~~~~~L~~a~~~L~~ 252 (264)
T PF06008_consen 231 EL------SEQQNEVSETLKEAEDLLDQ 252 (264)
T ss_pred HH------HHHHHHHHHHHHHHHHHHHH
Confidence 22 23334455555555555554
No 171
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=59.30 E-value=7.2 Score=44.93 Aligned_cols=20 Identities=15% Similarity=0.308 Sum_probs=18.1
Q ss_pred EEEEEcCccceEEEEEEcCC
Q 004210 3 VVGFDIGNENCVIAAVKQGG 22 (768)
Q Consensus 3 viGID~Gtt~s~va~~~~~~ 22 (768)
++|||+|||++++++++..+
T Consensus 5 ~lgID~GTts~Ka~l~d~~G 24 (520)
T PRK10939 5 LMALDAGTGSIRAVIFDLNG 24 (520)
T ss_pred EEEEecCCCceEEEEECCCC
Confidence 89999999999999998654
No 172
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=59.25 E-value=6.4 Score=41.79 Aligned_cols=19 Identities=26% Similarity=0.417 Sum_probs=17.2
Q ss_pred cEEEEEEeCCceEEEEEEE
Q 004210 195 TYVVFVDIGHCDTQVCVAS 213 (768)
Q Consensus 195 ~~vlv~D~GggT~dvsv~~ 213 (768)
.+++++||||.|||++++.
T Consensus 128 ~~~I~~DmGGTTtDi~~i~ 146 (318)
T TIGR03123 128 PECLFVDMGSTTTDIIPII 146 (318)
T ss_pred CCEEEEEcCccceeeEEec
Confidence 4599999999999999986
No 173
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=58.58 E-value=95 Score=36.62 Aligned_cols=44 Identities=18% Similarity=0.114 Sum_probs=37.0
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccHHHHHHHHHHHHHHhhhhc
Q 004210 683 SLPSKVRDAVIDECSKAEEWLREKVTQQDSLPKDADPILWSTEIKRKSEALDLTCKCIM 741 (768)
Q Consensus 683 ~~~~ee~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~~~i~ 741 (768)
.++.++++.+...+++++.||+. + ...+++.+.++|++.+.++.
T Consensus 553 ~~~~~~~~~~~~~l~~~~~~l~~----~-----------d~~~~~~~~~~l~~~~~~~~ 596 (616)
T PRK05183 553 LLSAAERAAIDAAMAALREVAQG----D-----------DADAIEAAIKALDKATQEFA 596 (616)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhc----C-----------CHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999964 1 22788999999999888887
No 174
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=58.09 E-value=11 Score=33.94 Aligned_cols=20 Identities=30% Similarity=0.552 Sum_probs=17.3
Q ss_pred EEEEEcCccceEEEEEEcCC
Q 004210 3 VVGFDIGNENCVIAAVKQGG 22 (768)
Q Consensus 3 viGID~Gtt~s~va~~~~~~ 22 (768)
|++||+|++.++++++..+.
T Consensus 1 i~~iDiGs~~~~~~i~~~~~ 20 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDGS 20 (120)
T ss_dssp EEEEEE-SSSEEEEEEETTE
T ss_pred CEEEEcCCCcEEEEEEEeCC
Confidence 68999999999999998875
No 175
>PF11593 Med3: Mediator complex subunit 3 fungal; InterPro: IPR020998 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents the subunit Med3, which is a physical target for Cyc8-Tup1, a yeast transcriptional co-repressor []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=56.96 E-value=54 Score=34.97 Aligned_cols=50 Identities=14% Similarity=0.287 Sum_probs=41.2
Q ss_pred HHHHHHHHHhhcCCCccHHHHHHHHHHHHHhHhHHHHhhHhHHHHHHHHHHH
Q 004210 617 NLRDTEEWLYEDGDDESENVYAERLEDLKKLVDPIEGRYKDEEARAQATGAL 668 (768)
Q Consensus 617 ~l~~~~~WL~~~g~~a~~~~~~~kl~~L~~~~~pi~~R~~e~~~rp~a~~~l 668 (768)
.|+++++||-++ +. +++.+.+++.+-++-+-||.-++.|+-..=..|+.+
T Consensus 9 ~LeeLe~kLa~~-d~-~Kd~V~~~I~ea~~sILPlRL~FNeFi~tma~Ie~~ 58 (379)
T PF11593_consen 9 KLEELEEKLASN-DN-SKDSVMDKISEAQDSILPLRLQFNEFIQTMANIEEM 58 (379)
T ss_pred cHHHHHHHHhcC-Cc-hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhcc
Confidence 588999999854 34 999999999999999999999999877665555544
No 176
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=56.96 E-value=1.1e+02 Score=35.95 Aligned_cols=44 Identities=23% Similarity=0.216 Sum_probs=36.1
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccHHHHHHHHHHHHHHhhhhc
Q 004210 683 SLPSKVRDAVIDECSKAEEWLREKVTQQDSLPKDADPILWSTEIKRKSEALDLTCKCIM 741 (768)
Q Consensus 683 ~~~~ee~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~~~i~ 741 (768)
.++++++..+...+++++.||.+. | ..+++.+.+.|++.+..+.
T Consensus 537 ~~~~~~~~~~~~~l~~~~~~l~~~-----------~----~~~~~~~~~~l~~~~~~~~ 580 (599)
T TIGR01991 537 LLSEDERAAIDAAMEALQKALQGD-----------D----ADAIKAAIEALEEATDNFA 580 (599)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcC-----------C----HHHHHHHHHHHHHHHHHHH
Confidence 378999999999999999999651 2 2688888888888887776
No 177
>KOG1369 consensus Hexokinase [Carbohydrate transport and metabolism]
Probab=56.50 E-value=29 Score=38.85 Aligned_cols=63 Identities=14% Similarity=0.098 Sum_probs=45.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCc---ceEeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEee
Q 004210 146 PCYLTDVQRRAYLDAATIAGLK---PLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYE 215 (768)
Q Consensus 146 P~~~~~~qr~~l~~Aa~~AGl~---~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~ 215 (768)
+.-....--+.+.+|.+.-|+. +..++|+.++..++.++.. +++++=+=+|.||--+-+.+..
T Consensus 186 ~~~~g~Dvv~~L~eal~rr~~~~i~V~AlvNDTvGtl~~~~y~~-------~~~~igvI~GTGtNacY~e~~~ 251 (474)
T KOG1369|consen 186 TDCEGEDVVRLLREAIKRRGLFDMDVVAVVNDTVGTLMTCAYED-------PNCEIGVIFGTGTNACYMEDMR 251 (474)
T ss_pred hhhhcchHHHHHHHHHHHcCCcceEEEEEEecCHHhHhhceecC-------CCcEEEEEECCCccceeeeecc
Confidence 3334445567888888888876 7889999999888765533 3566666689998877777765
No 178
>PLN02295 glycerol kinase
Probab=56.46 E-value=8.5 Score=44.25 Aligned_cols=20 Identities=15% Similarity=0.180 Sum_probs=17.8
Q ss_pred EEEEEcCccceEEEEEEcCC
Q 004210 3 VVGFDIGNENCVIAAVKQGG 22 (768)
Q Consensus 3 viGID~Gtt~s~va~~~~~~ 22 (768)
++|||+|||++++++++..+
T Consensus 2 vlgID~GTts~Ka~l~d~~G 21 (512)
T PLN02295 2 VGAIDQGTTSTRFIIYDRDA 21 (512)
T ss_pred EEEEecCCCceEEEEECCCC
Confidence 79999999999999997544
No 179
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=56.27 E-value=8.7 Score=44.49 Aligned_cols=20 Identities=20% Similarity=0.507 Sum_probs=17.8
Q ss_pred EEEEEcCccceEEEEEEcCC
Q 004210 3 VVGFDIGNENCVIAAVKQGG 22 (768)
Q Consensus 3 viGID~Gtt~s~va~~~~~~ 22 (768)
++|||+|||++++++++..+
T Consensus 2 ~lgID~GTts~Ka~l~d~~G 21 (541)
T TIGR01315 2 YIGVDVGTGSARACIIDSTG 21 (541)
T ss_pred EEEEEecCcCEEEEEEcCCC
Confidence 79999999999999997554
No 180
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=55.63 E-value=9.9 Score=43.98 Aligned_cols=21 Identities=29% Similarity=0.390 Sum_probs=18.3
Q ss_pred eEEEEEcCccceEEEEEE-cCC
Q 004210 2 SVVGFDIGNENCVIAAVK-QGG 22 (768)
Q Consensus 2 ~viGID~Gtt~s~va~~~-~~~ 22 (768)
.++|||+|||++++++++ ..+
T Consensus 2 ~~lgiD~GTss~Ka~l~d~~~G 23 (536)
T TIGR01234 2 YAIGVDFGTLSGRALAVDVATG 23 (536)
T ss_pred eEEEEecCCCceEEEEEECCCC
Confidence 489999999999999999 444
No 181
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=54.59 E-value=11 Score=35.84 Aligned_cols=37 Identities=19% Similarity=0.280 Sum_probs=0.0
Q ss_pred CeEEEEEcCccceEEEEEEcCCceEEEeCCCCCccceE
Q 004210 1 MSVVGFDIGNENCVIAAVKQGGMLDVLLNDESKRETPT 38 (768)
Q Consensus 1 m~viGID~Gtt~s~va~~~~~~~~~i~~n~~~~r~~Ps 38 (768)
|-|+|||-|++++..|++...+ -.+..-..|--++++
T Consensus 2 m~iLGIDPgl~~tG~avi~~~~-~~~~~~~~G~i~t~~ 38 (164)
T PRK00039 2 MRILGIDPGLRRTGYGVIEVEG-RRLSYVASGVIRTPS 38 (164)
T ss_pred CEEEEEccccCceeEEEEEecC-CeEEEEEeeEEECCC
No 182
>KOG2708 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=54.50 E-value=1.4e+02 Score=29.77 Aligned_cols=42 Identities=17% Similarity=0.241 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCcCEEEEecCCCChHHHHHHHHhhc
Q 004210 310 SLLERMRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLF 356 (768)
Q Consensus 310 ~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~f 356 (768)
.+|.-+.+.-++++...+ -+.|++|||-+..-.+|++.....
T Consensus 237 tvFamLVEiTERAMAh~~-----s~evLIVGGVGCN~RLQeMM~~Mc 278 (336)
T KOG2708|consen 237 TVFAMLVEITERAMAHCG-----SKEVLIVGGVGCNERLQEMMAIMC 278 (336)
T ss_pred HHHHHHHHHHHHHHhhcC-----CCcEEEEecccccHHHHHHHHHHH
Confidence 345555555667776654 356999999999999999998887
No 183
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=53.71 E-value=11 Score=40.91 Aligned_cols=21 Identities=24% Similarity=0.493 Sum_probs=18.6
Q ss_pred eEEEEEcCccceEEEEEEcCC
Q 004210 2 SVVGFDIGNENCVIAAVKQGG 22 (768)
Q Consensus 2 ~viGID~Gtt~s~va~~~~~~ 22 (768)
.++|||+|+|.+++.+++.++
T Consensus 3 y~lGIDIGSTsTKaVVmd~~g 23 (432)
T TIGR02259 3 CFVGIDLGSTTTKAVLMDDKG 23 (432)
T ss_pred eEEEEEcCchhEEEEEEcCCC
Confidence 379999999999999998764
No 184
>PRK00047 glpK glycerol kinase; Provisional
Probab=53.23 E-value=10 Score=43.39 Aligned_cols=21 Identities=14% Similarity=0.325 Sum_probs=18.1
Q ss_pred eEEEEEcCccceEEEEEEcCC
Q 004210 2 SVVGFDIGNENCVIAAVKQGG 22 (768)
Q Consensus 2 ~viGID~Gtt~s~va~~~~~~ 22 (768)
.+||||+|||++++++++..+
T Consensus 6 ~~lgiD~GTts~Ka~l~d~~g 26 (498)
T PRK00047 6 YILALDQGTTSSRAIIFDHDG 26 (498)
T ss_pred EEEEEecCCCceEEEEECCCC
Confidence 379999999999999997544
No 185
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=53.08 E-value=10 Score=43.30 Aligned_cols=21 Identities=14% Similarity=0.328 Sum_probs=18.1
Q ss_pred eEEEEEcCccceEEEEEEcCC
Q 004210 2 SVVGFDIGNENCVIAAVKQGG 22 (768)
Q Consensus 2 ~viGID~Gtt~s~va~~~~~~ 22 (768)
.++|||+|||++++++++..+
T Consensus 2 ~~lgiDiGtt~iKa~l~d~~g 22 (493)
T TIGR01311 2 YILAIDQGTTSSRAIVFDKDG 22 (493)
T ss_pred eEEEEecCCCceEEEEECCCC
Confidence 379999999999999997554
No 186
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=52.14 E-value=3e+02 Score=28.78 Aligned_cols=88 Identities=13% Similarity=0.218 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHhHhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHhCCCChhh
Q 004210 609 SEREGISRNLRDTEEWLYEDGDDESENVYAERLEDLKKLVDPIEGRYKDEEARAQATGALLKCAMDYRKVVEAHSLPSKV 688 (768)
Q Consensus 609 ~e~~~l~~~l~~~~~WL~~~g~~a~~~~~~~kl~~L~~~~~pi~~R~~e~~~rp~a~~~l~~~l~~~~~~~~~~~~~~ee 688 (768)
++|+.+.+.+.++.+= .+++..++++|......+..-..++..-+..+..+...|.....+..+..+|.++
T Consensus 62 ~~rdeineev~elK~k---------R~ein~kl~eL~~~~~~l~e~~~~~~~~~~~~~~ler~i~~Le~~~~T~~L~~e~ 132 (294)
T COG1340 62 EERDEINEEVQELKEK---------RDEINAKLQELRKEYRELKEKRNEFNLGGRSIKSLEREIERLEKKQQTSVLTPEE 132 (294)
T ss_pred HHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHhcCCChHH
Confidence 4555666555555442 3445556666666555555555554445556666667676666655333366655
Q ss_pred HHHHHHHHHHHHHHHHH
Q 004210 689 RDAVIDECSKAEEWLRE 705 (768)
Q Consensus 689 ~~~v~~~~~~~~~Wl~~ 705 (768)
=..+...|.....-|+.
T Consensus 133 E~~lvq~I~~L~k~le~ 149 (294)
T COG1340 133 ERELVQKIKELRKELED 149 (294)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555555555444443
No 187
>PLN02377 3-ketoacyl-CoA synthase
Probab=52.12 E-value=34 Score=38.89 Aligned_cols=67 Identities=12% Similarity=0.145 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCEEEE-ecCCCChHHHHHHHHhhcCCC---CCCcCChhhHH
Q 004210 304 FEKLSSSLLERMRIPCQKALAGSGLNVEKIHSVEL-VGSGSRIPAISRMLNSLFNRE---PGRTINASECV 370 (768)
Q Consensus 304 fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~L-vGG~srip~v~~~l~~~fg~~---v~~~~n~~eav 370 (768)
++...++...-+...++++|+++|+++++||.|+. +.|....|.+-.+|.+.+|.+ ...+++..-|.
T Consensus 165 ~~~~~~ea~~l~~~A~~~aL~kaGi~p~dID~LVv~cS~~~~~PSlaa~V~~~LGlr~~v~afdL~gmGCs 235 (502)
T PLN02377 165 MAAAREEAEQVMFGALDNLFANTNVNPKDIGILVVNCSLFNPTPSLSAMIVNKYKLRGNIRSFNLGGMGCS 235 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCcHHHHHHHHhCCCCCCeEEecccchhh
Confidence 44445555566677888999999999999999987 444446899999999999843 23445543333
No 188
>PRK04863 mukB cell division protein MukB; Provisional
Probab=51.64 E-value=7e+02 Score=32.85 Aligned_cols=97 Identities=12% Similarity=0.108 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHhHhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhH
Q 004210 610 EREGISRNLRDTEEWLYEDGDDESENVYAERLEDLKKLVDPIEGRYKDEEARAQATGALLKCAMDYRKVVEAHSLPSKVR 689 (768)
Q Consensus 610 e~~~l~~~l~~~~~WL~~~g~~a~~~~~~~kl~~L~~~~~pi~~R~~e~~~rp~a~~~l~~~l~~~~~~~~~~~~~~ee~ 689 (768)
..+++...+.+..+.+.+- ....+..+++++.|+.-.............+-.........+..++.+|-...+|.+++
T Consensus 363 ~Lee~eeeLeeleeeleel--eeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~~~~~~~SdEeL 440 (1486)
T PRK04863 363 RLEEQNEVVEEADEQQEEN--EARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNA 440 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHH
Confidence 3344444444444444432 22334445555555544444555555555565666666667777777773235888876
Q ss_pred HHH----HHHHHHHHHHHHHHHH
Q 004210 690 DAV----IDECSKAEEWLREKVT 708 (768)
Q Consensus 690 ~~v----~~~~~~~~~Wl~~~~~ 708 (768)
... .+.+.+...++.+...
T Consensus 441 e~~LenF~aklee~e~qL~elE~ 463 (1486)
T PRK04863 441 EDWLEEFQAKEQEATEELLSLEQ 463 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 543 3444445555554443
No 189
>COG4296 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.48 E-value=41 Score=30.21 Aligned_cols=23 Identities=30% Similarity=0.645 Sum_probs=19.5
Q ss_pred HHHHHHhhcCCCccHHHHHHHHH
Q 004210 620 DTEEWLYEDGDDESENVYAERLE 642 (768)
Q Consensus 620 ~~~~WL~~~g~~a~~~~~~~kl~ 642 (768)
..++||++|+...|.++|++|..
T Consensus 90 knE~WleEDe~~iTpE~fk~Rm~ 112 (156)
T COG4296 90 KNEDWLEEDEQPITPESFKERMA 112 (156)
T ss_pred chhhhhhccCCccCHHHHHHHhh
Confidence 35789999999999999988764
No 190
>PRK13410 molecular chaperone DnaK; Provisional
Probab=51.37 E-value=1.6e+02 Score=35.12 Aligned_cols=22 Identities=18% Similarity=0.280 Sum_probs=19.0
Q ss_pred CChhhHHHHHHHHHHHHHHHHH
Q 004210 684 LPSKVRDAVIDECSKAEEWLRE 705 (768)
Q Consensus 684 ~~~ee~~~v~~~~~~~~~Wl~~ 705 (768)
++++++..+...+++++.||.+
T Consensus 556 ~~~~~~~~~~~~l~~~~~wL~~ 577 (668)
T PRK13410 556 FAERQRRAVESAMRDVQDSLEQ 577 (668)
T ss_pred CCHHHHHHHHHHHHHHHHHHhc
Confidence 6888899999999999999965
No 191
>PF03630 Fumble: Fumble ; InterPro: IPR004567 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This family describes the type II (primarily eukaryotic) form of pantothenate kinase PanK, characterised from the fungus Emericella nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from type I PanK enzymes and shows little sequence similarity [, ].; GO: 0004594 pantothenate kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 3SMP_B 2I7N_B 2EWS_B 2I7P_C 3SMS_A 3MK6_D.
Probab=50.94 E-value=2.4e+02 Score=30.42 Aligned_cols=46 Identities=20% Similarity=0.145 Sum_probs=33.6
Q ss_pred CcCEEEEecCCCCh-HHHHHHHH---hhcC---CCCCCcCChhhHHHhHHHHH
Q 004210 332 KIHSVELVGSGSRI-PAISRMLN---SLFN---REPGRTINASECVARGCALQ 377 (768)
Q Consensus 332 ~i~~V~LvGG~sri-p~v~~~l~---~~fg---~~v~~~~n~~eava~Gaa~~ 377 (768)
.++.|+++|+..|. |...+.|. .++. .+....-|...+.|.||.+.
T Consensus 287 ~~~~I~f~G~~~~~~~~~~~~l~~a~~~~s~~~~~~~fl~h~gy~galGa~l~ 339 (341)
T PF03630_consen 287 GVKRIVFGGSFIRNNPITMRTLSYAINFWSKGELKALFLRHEGYLGALGAFLK 339 (341)
T ss_dssp T--EEEEESGGGTSSCHHHHHHHHHHHHHTTTS-EEEEETTTTSHHHHHHHHT
T ss_pred CCCEEEEEeccccCCHHHHHHHHHHHHHhccCCceEEEecCCchhHHHHHHHh
Confidence 57889999999875 67788887 5553 34556678899999999764
No 192
>PRK13321 pantothenate kinase; Reviewed
Probab=50.85 E-value=14 Score=38.04 Aligned_cols=20 Identities=20% Similarity=0.358 Sum_probs=17.7
Q ss_pred EEEEEcCccceEEEEEEcCC
Q 004210 3 VVGFDIGNENCVIAAVKQGG 22 (768)
Q Consensus 3 viGID~Gtt~s~va~~~~~~ 22 (768)
+++||+|+|++++|+++.+.
T Consensus 2 iL~IDIGnT~ik~gl~~~~~ 21 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFDGDR 21 (256)
T ss_pred EEEEEECCCeEEEEEEECCE
Confidence 68999999999999998554
No 193
>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=50.61 E-value=3.2e+02 Score=28.71 Aligned_cols=64 Identities=13% Similarity=0.117 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCcCEEEEecCCCCh-HHHHHHHHhhcCCCCCCcCChhhHHHhHHHHHhhH
Q 004210 310 SLLERMRIPCQKALAGSGLNVEKIHSVELVGSGSRI-PAISRMLNSLFNREPGRTINASECVARGCALQCAM 380 (768)
Q Consensus 310 ~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~sri-p~v~~~l~~~fg~~v~~~~n~~eava~Gaa~~a~~ 380 (768)
.++++....|...++...+ ......+.|.||.... |++.....+....+. ..-+..||...|..
T Consensus 227 ~Il~~aa~~i~~~~~~l~~-~~g~~~l~l~GG~~~~~~~~~~~~~~~l~~~~------~~D~~~GA~~~A~~ 291 (301)
T COG2971 227 RILKEAAAYIATLLEALSI-FNGSEKLSLLGGLAPSYPYYLSLFRRALLVPP------IGDALSGAVLLALG 291 (301)
T ss_pred HHHHHHHHHHHHHHHHHhc-ccCCceEEEeccccccchhhHHHHHHHhcCCc------cccHHHHHHHHHHH
Confidence 4556666666666655421 2245679999998877 777777777654322 55567788877753
No 194
>PRK13318 pantothenate kinase; Reviewed
Probab=50.47 E-value=14 Score=38.12 Aligned_cols=20 Identities=30% Similarity=0.581 Sum_probs=17.7
Q ss_pred EEEEEcCccceEEEEEEcCC
Q 004210 3 VVGFDIGNENCVIAAVKQGG 22 (768)
Q Consensus 3 viGID~Gtt~s~va~~~~~~ 22 (768)
+++||+|.|++++++++.+.
T Consensus 2 iL~IDIGnT~iK~al~d~g~ 21 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYEGGK 21 (258)
T ss_pred EEEEEECCCcEEEEEEECCE
Confidence 68999999999999998544
No 195
>PLN02596 hexokinase-like
Probab=49.99 E-value=63 Score=36.61 Aligned_cols=55 Identities=20% Similarity=0.209 Sum_probs=33.5
Q ss_pred HHHHHHHHHHcCC--cceEeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEee
Q 004210 154 RRAYLDAATIAGL--KPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYE 215 (768)
Q Consensus 154 r~~l~~Aa~~AGl--~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~ 215 (768)
.+.+.+|...-|+ +++.|+|+.+++.++.++.. +...+=+=+|-||=-+.+-++.
T Consensus 208 v~lL~~Al~r~~l~v~v~AivNDTVgTL~a~aY~~-------~~~~iG~I~GTGtNacY~E~~~ 264 (490)
T PLN02596 208 VNDINRALEKHGLKIRVFALVDDTIGNLAGGRYYN-------KDTVAAVTLGMGTNAAYVEPAQ 264 (490)
T ss_pred HHHHHHHHHhcCCCceEEEEEEcCHHHHHhhhcCC-------CCeEEEEEEecccceEEEEEcc
Confidence 3445555555555 57899999999988776543 2233222267776655554443
No 196
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=49.78 E-value=3.5e+02 Score=28.81 Aligned_cols=16 Identities=6% Similarity=0.000 Sum_probs=9.2
Q ss_pred CChhhHHHHHHHHHHH
Q 004210 684 LPSKVRDAVIDECSKA 699 (768)
Q Consensus 684 ~~~ee~~~v~~~~~~~ 699 (768)
+|..|+..+...++..
T Consensus 268 ~t~~Ei~~Lk~~~~~L 283 (312)
T smart00787 268 FTFKEIEKLKEQLKLL 283 (312)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 6666666666554433
No 197
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=49.16 E-value=3.2e+02 Score=33.91 Aligned_cols=39 Identities=13% Similarity=0.256 Sum_probs=22.9
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHhhHhhccCCHHHHHHHHHH
Q 004210 576 KMERTKDRKNALESYVYEMRDKISNIYRSFATESEREGISRN 617 (768)
Q Consensus 576 ~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~t~~e~~~l~~~ 617 (768)
-+...+++..+|+.+|-.+|+.|.. +-.++++.+++.+.
T Consensus 1462 s~~q~~~s~~el~~Li~~v~~Flt~---~~adp~si~~vA~~ 1500 (1758)
T KOG0994|consen 1462 SRSQMEESNRELRNLIQQVRDFLTQ---PDADPDSIEEVAEE 1500 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC---CCCCHHHHHHHHHH
Confidence 3344455666677777777777753 34555555555443
No 198
>PRK04123 ribulokinase; Provisional
Probab=47.90 E-value=15 Score=42.55 Aligned_cols=20 Identities=30% Similarity=0.556 Sum_probs=17.8
Q ss_pred EEEEEcCccceEEEEEEc-CC
Q 004210 3 VVGFDIGNENCVIAAVKQ-GG 22 (768)
Q Consensus 3 viGID~Gtt~s~va~~~~-~~ 22 (768)
++|||+|||++++++++. ++
T Consensus 5 ~lgiD~GTts~Ka~l~d~~~g 25 (548)
T PRK04123 5 VIGLDFGTDSVRALLVDCATG 25 (548)
T ss_pred EEEEecCCCceEEEEEECCCC
Confidence 799999999999999983 55
No 199
>PLN02902 pantothenate kinase
Probab=47.70 E-value=3.2e+02 Score=33.19 Aligned_cols=47 Identities=13% Similarity=0.049 Sum_probs=31.7
Q ss_pred CcCEEEEecCCCC-----hHHHHHHHHhhc--C-CCCCCcCChhhHHHhHHHHHhh
Q 004210 332 KIHSVELVGSGSR-----IPAISRMLNSLF--N-REPGRTINASECVARGCALQCA 379 (768)
Q Consensus 332 ~i~~V~LvGG~sr-----ip~v~~~l~~~f--g-~~v~~~~n~~eava~Gaa~~a~ 379 (768)
+++.|+++|+.-| |..+...+. ++ | .+....-+-....|+||.+...
T Consensus 346 ~ikrIvF~G~fIr~h~~tm~~ls~Ai~-fwSkg~~~a~FlrHeGylGAlGafl~~~ 400 (876)
T PLN02902 346 GLKRIFFGGFFIRGHAYTMDTISFAVH-FWSKGEAQAMFLRHEGFLGALGAFMSYE 400 (876)
T ss_pred CCCEEEEecceecCCcchHHHHHHHHH-HhcCCceEEEEecccchhHHHHHHhcCC
Confidence 6888999998766 344544554 44 3 3455566777888999986654
No 200
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=46.71 E-value=3.9e+02 Score=28.56 Aligned_cols=16 Identities=0% Similarity=-0.105 Sum_probs=9.5
Q ss_pred CChhhHHHHHHHHHHH
Q 004210 684 LPSKVRDAVIDECSKA 699 (768)
Q Consensus 684 ~~~ee~~~v~~~~~~~ 699 (768)
+|..|+..+.+.++..
T Consensus 273 ~t~~Ev~~Lk~~~~~L 288 (325)
T PF08317_consen 273 WTRSEVKRLKAKVDAL 288 (325)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 6666666666654433
No 201
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=46.34 E-value=5e+02 Score=32.44 Aligned_cols=36 Identities=6% Similarity=0.192 Sum_probs=24.1
Q ss_pred CCCHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHHHHHHHh
Q 004210 554 GMTKTELSEAVEKEHQLVQQDLKMERTKDRKNALESYVYEMRDKIS 599 (768)
Q Consensus 554 ~ls~~e~~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~ 599 (768)
+++.++|+.+.. .++++....++.|..+|+.+..+.
T Consensus 1507 p~tpeqi~~L~~----------~I~e~v~sL~nVd~IL~~T~~di~ 1542 (1758)
T KOG0994|consen 1507 PLTPEQIQQLTG----------EIQERVASLPNVDAILSRTKGDIA 1542 (1758)
T ss_pred CCCHHHHHHHHH----------HHHHHHHhcccHHHHHHhhhhhHH
Confidence 366666655544 345567778888888888877664
No 202
>PHA02566 alt ADP-ribosyltransferase; Provisional
Probab=46.06 E-value=5.5e+02 Score=30.08 Aligned_cols=140 Identities=11% Similarity=0.142 Sum_probs=75.6
Q ss_pred HHHHHHhhHHHHHHHHHHHHhhHhhccCCHHHHHHHHHHHHHHHHHHhhcCC--CccHHHHHHHHHHHHHhHhHHHHhhH
Q 004210 579 RTKDRKNALESYVYEMRDKISNIYRSFATESEREGISRNLRDTEEWLYEDGD--DESENVYAERLEDLKKLVDPIEGRYK 656 (768)
Q Consensus 579 ~~~~akN~LEs~iy~~r~~l~~~~~~~~t~~e~~~l~~~l~~~~~WL~~~g~--~a~~~~~~~kl~~L~~~~~pi~~R~~ 656 (768)
+-....+.||.|.+.+...++. +. +. .+.+ .....+|+.+... .....+..+++ +++....+..
T Consensus 330 ~~~~~~k~~~~~~~~~~~~~~~-~~----d~---~~~~-~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~k~--- 395 (684)
T PHA02566 330 EDQTSIKNLEKFAASVDELLED-YK----DI---VFEN-SLDALEWINDLNKGRKGMPDEVKAEL--TRSKWKQAKT--- 395 (684)
T ss_pred cccccHHHHHHHHHHHHHHHHH-hh----hh---hhhh-hhHHHHHHHhhccccccCchHHHHHH--HHHHHHHHHH---
Confidence 3355677899999999887753 21 11 2223 5677889987532 22222211111 1111111111
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH---HhCCCChhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCc--ccHHHHHHHHH
Q 004210 657 DEEARAQATGALLKCAMDYRKVV---EAHSLPSKVRDAVIDECSKAEEWLREKVTQQDSLPKDADPI--LWSTEIKRKSE 731 (768)
Q Consensus 657 e~~~rp~a~~~l~~~l~~~~~~~---~~~~~~~ee~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~--~~~~di~~k~~ 731 (768)
. -.+-..-.........+-.+. ....+|.+|+..|.+-+.....|.|+-+.... +|. ..-.++++.++
T Consensus 396 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~k~LT~~E~~AI~dY~~sgY~~IN~yLrG~~------~s~~~~~~~ei~k~Ik 468 (684)
T PHA02566 396 K-FLMRAIYKFARESASQMYEITGARDPKKLTPAESRAIREYCASGYIDINNFLLGRY------KPEFYMDEEEAEKAID 468 (684)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHhhhcCcccCCHHHHHHHHHHHHhhHHHHHHHHhcCC------CcccccChHHHHHHHH
Confidence 0 001111111111111121211 01239999999999999999999999885222 333 33468889999
Q ss_pred HHHHHhhh
Q 004210 732 ALDLTCKC 739 (768)
Q Consensus 732 ~l~~~~~~ 739 (768)
.|++.+.+
T Consensus 469 ~IDsAf~k 476 (684)
T PHA02566 469 NLDSAFKN 476 (684)
T ss_pred HHHHHHhc
Confidence 99988876
No 203
>PRK10869 recombination and repair protein; Provisional
Probab=44.54 E-value=5.6e+02 Score=29.73 Aligned_cols=81 Identities=12% Similarity=0.092 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHhhhhhhH----HHHHHHHhhHHHHHHHHHHHHhhHhhccCCHHHHHHHHHHHHHHHHHHhhcCCCccHH
Q 004210 560 LSEAVEKEHQLVQQDLKM----ERTKDRKNALESYVYEMRDKISNIYRSFATESEREGISRNLRDTEEWLYEDGDDESEN 635 (768)
Q Consensus 560 ~~~~~~~~~~~~~~D~~~----~~~~~akN~LEs~iy~~r~~l~~~~~~~~t~~e~~~l~~~l~~~~~WL~~~g~~a~~~ 635 (768)
+..+...+..+...|... ....++...||...+.+++.+++ --..|++.+++.+.|..+..--...| .+.+
T Consensus 246 l~~~~~~l~~~~~~d~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~---~~~dp~~l~~ie~Rl~~l~~L~rKyg--~~~~ 320 (553)
T PRK10869 246 LYSAKQLLSELIGMDSKLSGVLDMLEEALIQIQEASDELRHYLDR---LDLDPNRLAELEQRLSKQISLARKHH--VSPE 320 (553)
T ss_pred HHHHHHHHHHHhhhCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cCCCHHHHHHHHHHHHHHHHHHHHhC--CCHH
Confidence 444444444444444222 22233444445455555444432 13356666666666666555554443 2444
Q ss_pred HHHHHHHHHH
Q 004210 636 VYAERLEDLK 645 (768)
Q Consensus 636 ~~~~kl~~L~ 645 (768)
++.+.+++++
T Consensus 321 ~~~~~~~~l~ 330 (553)
T PRK10869 321 ELPQHHQQLL 330 (553)
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 204
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=44.29 E-value=2e+02 Score=34.19 Aligned_cols=46 Identities=4% Similarity=0.047 Sum_probs=35.9
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccHHHHHHHHHHHHHHhhhhc
Q 004210 683 SLPSKVRDAVIDECSKAEEWLREKVTQQDSLPKDADPILWSTEIKRKSEALDLTCKCIM 741 (768)
Q Consensus 683 ~~~~ee~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~~~i~ 741 (768)
.++.+++..+...+...+.||+. ++ . ...+++.+.++|++.+.++.
T Consensus 575 ~~~~~~~~~~~~~~~~~~~~l~~----~~-----~----~~~~~~~~~~~l~~~~~~~~ 620 (657)
T PTZ00186 575 YVSDAEKENVKTLVAELRKAMEN----PN-----V----AKDDLAAATDKLQKAVMECG 620 (657)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhc----CC-----c----CHHHHHHHHHHHHHHHHHHH
Confidence 46888899999999999999952 11 1 23788889999999888887
No 205
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=43.25 E-value=4.6e+02 Score=33.68 Aligned_cols=75 Identities=17% Similarity=0.237 Sum_probs=45.4
Q ss_pred CCCHHHHHHHHHHHHHHhhhhhhHH-------HHHHHHhhHHHHHHHHHHHHhhHhhccCCHHHHHHHHHHHHHHHHHHh
Q 004210 554 GMTKTELSEAVEKEHQLVQQDLKME-------RTKDRKNALESYVYEMRDKISNIYRSFATESEREGISRNLRDTEEWLY 626 (768)
Q Consensus 554 ~ls~~e~~~~~~~~~~~~~~D~~~~-------~~~~akN~LEs~iy~~r~~l~~~~~~~~t~~e~~~l~~~l~~~~~WL~ 626 (768)
.+++.++..+.+...-....+..+. ++.+-.+.++..++.++..|+.--...-.......+.+.+..++.|++
T Consensus 151 ~~kp~err~iiEEaaGv~~y~~r~~ea~~~L~~~~~nl~~~~~~~~el~~~l~~L~~q~~~a~~y~~l~~e~~~~~~~~~ 230 (1163)
T COG1196 151 NAKPEERRKLIEEAAGVSKYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALL 230 (1163)
T ss_pred cCCHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888888777665444443332 233444556666666666665322344455666777777888888776
Q ss_pred hc
Q 004210 627 ED 628 (768)
Q Consensus 627 ~~ 628 (768)
-.
T Consensus 231 ~~ 232 (1163)
T COG1196 231 LA 232 (1163)
T ss_pred HH
Confidence 43
No 206
>KOG0517 consensus Beta-spectrin [Cytoskeleton]
Probab=42.43 E-value=8e+02 Score=32.60 Aligned_cols=136 Identities=19% Similarity=0.292 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHHHHhhc---CCCccHHHHHHHHHHHHHhHhHHHHhhHhHHHHHH-----------HHH----HHHHH
Q 004210 610 EREGISRNLRDTEEWLYED---GDDESENVYAERLEDLKKLVDPIEGRYKDEEARAQ-----------ATG----ALLKC 671 (768)
Q Consensus 610 e~~~l~~~l~~~~~WL~~~---g~~a~~~~~~~kl~~L~~~~~pi~~R~~e~~~rp~-----------a~~----~l~~~ 671 (768)
|...+..=+.+-+.||.+- ..-.+.+.++.|...|..-.+-...|..+-..... -|. .|++.
T Consensus 852 e~d~~ElWi~Eke~~L~~m~~~~~~E~vev~q~rFe~l~~eM~~~~~~v~~Vn~~a~qL~~~ghp~sd~I~~~Q~~Ln~r 931 (2473)
T KOG0517|consen 852 ECDACELWIKEKEKWLATMSPPDSLEDVEVMQHRFEKLEQEMNTLAGRVAEVNDIARQLLEVGHPNSDEILARQDKLNQR 931 (2473)
T ss_pred hccHHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Confidence 4456666777778888752 22345566666666665554444444443222111 111 11111
Q ss_pred HHHHHHHHHhCC---CChhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccHHH--------------HHHHHHHHH
Q 004210 672 AMDYRKVVEAHS---LPSKVRDAVIDECSKAEEWLREKVTQQDSLPKDADPILWSTE--------------IKRKSEALD 734 (768)
Q Consensus 672 l~~~~~~~~~~~---~~~ee~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~d--------------i~~k~~~l~ 734 (768)
-..++..+.+.. -....+..+.-.|.++..|+.++...+..++.-.+-.-.+-. |+.|+..|+
T Consensus 932 W~~l~~l~~qk~~~L~~a~~V~~f~~eC~et~~wi~dK~~~~e~t~~~~~Dl~gv~alqrrL~~lErdl~aie~kv~~L~ 1011 (2473)
T KOG0517|consen 932 WQQLRELVDQKKVALESALRVETFHLECEETRVWIRDKTRVLESTDRLGNDLAGVMALQRRLQGLERDLAAIEAKVAALE 1011 (2473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccCcchHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 122222221100 223456777788999999999997766655444433333334 455555555
Q ss_pred HHhhhhcCCCC
Q 004210 735 LTCKCIMRSNP 745 (768)
Q Consensus 735 ~~~~~i~kpkP 745 (768)
++.+.|..+-|
T Consensus 1012 ~ea~~v~~~~P 1022 (2473)
T KOG0517|consen 1012 KEANKVEEEHP 1022 (2473)
T ss_pred HHHHHHhhcCh
Confidence 55555554444
No 207
>PLN03170 chalcone synthase; Provisional
Probab=42.34 E-value=70 Score=35.43 Aligned_cols=51 Identities=16% Similarity=0.205 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCcCEEEEecCCC-ChHHHHHHHHhhcCCC
Q 004210 309 SSLLERMRIPCQKALAGSGLNVEKIHSVELVGSGS-RIPAISRMLNSLFNRE 359 (768)
Q Consensus 309 ~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~s-rip~v~~~l~~~fg~~ 359 (768)
+...+-.....+++|+++|+++++|+.|+++-.+. .+|.+.-.|.+.+|.+
T Consensus 104 ~~a~~La~~Aa~~AL~~ag~~~~dId~lI~~T~Tg~~~Ps~a~~l~~~LGl~ 155 (401)
T PLN03170 104 VEVPKLGKAAAQKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKMLGLR 155 (401)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCCCChHHHHHHHHhCcC
Confidence 34445556678999999999999999998777544 6999999999999843
No 208
>cd02641 R3H_Smubp-2_like R3H domain of Smubp-2_like proteins. Smubp-2_like proteins also contain a helicase_like and an AN1-like Zinc finger domain and have been shown to bind single-stranded DNA. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA.
Probab=42.22 E-value=67 Score=24.86 Aligned_cols=29 Identities=21% Similarity=0.201 Sum_probs=26.0
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHHHcCCcc
Q 004210 140 NCVIGVPCYLTDVQRRAYLDAATIAGLKP 168 (768)
Q Consensus 140 ~~VitVP~~~~~~qr~~l~~Aa~~AGl~~ 168 (768)
...++.|+.++..||..+-+.|+..||..
T Consensus 17 ~~~l~F~p~ls~~eR~~vH~lA~~~gL~s 45 (60)
T cd02641 17 ATELEFPPTLSSHDRLLVHELAEELGLRH 45 (60)
T ss_pred cCcEECCCCCCHHHHHHHHHHHHHcCCce
Confidence 36788999999999999999999999875
No 209
>PLN02669 xylulokinase
Probab=42.02 E-value=20 Score=41.62 Aligned_cols=21 Identities=14% Similarity=0.240 Sum_probs=18.3
Q ss_pred eEEEEEcCccceEEEEEEcCC
Q 004210 2 SVVGFDIGNENCVIAAVKQGG 22 (768)
Q Consensus 2 ~viGID~Gtt~s~va~~~~~~ 22 (768)
.+||||+||+.+++++++..+
T Consensus 9 ~~LGiD~GT~s~Ka~l~d~~g 29 (556)
T PLN02669 9 LFLGFDSSTQSLKATVLDSNL 29 (556)
T ss_pred eEEEEecccCCeEEEEEcCCC
Confidence 479999999999999998554
No 210
>KOG0678 consensus Actin-related protein Arp2/3 complex, subunit Arp3 [Cytoskeleton]
Probab=41.80 E-value=3.2e+02 Score=28.98 Aligned_cols=98 Identities=15% Similarity=0.113 Sum_probs=56.7
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHHHcCCcceEec---cchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEeeC
Q 004210 140 NCVIGVPCYLTDVQRRAYLDAATIAGLKPLRLM---HDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYEN 216 (768)
Q Consensus 140 ~~VitVP~~~~~~qr~~l~~Aa~~AGl~~~~li---~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~ 216 (768)
...+|-|.--.+.-|.-+.+..- --++|..|. ..-.|.|+.| ...... +..-.-+|+|-|-|-|-+-.+. .
T Consensus 108 ~fLlteppln~penreytaeImf-EsfnvpglyiAVqavLALaasw--ts~~v~-er~ltG~VidsGdgvThvipva--E 181 (415)
T KOG0678|consen 108 YFLLTEPPLNQPENREYTAEIMF-ESFNVPGLYIAVQAVLALAASW--TSRQVG-ERFLTGIVIDSGDGVTHVIPVA--E 181 (415)
T ss_pred eEEecCCCCCCchhhHHHHHhhh-hhccCchHHHHHHHHHHHHHHH--HHhhhh-hheeeeEEEecCCCeeEEEEee--c
Confidence 46678887777777776654431 124444443 2222333333 222111 1233458999999988776654 3
Q ss_pred CeEEEEEEeCCCCCchhhHHHHHHHHHH
Q 004210 217 GHMKILSHAFDESLGGRDFDEVLSSYFA 244 (768)
Q Consensus 217 ~~~~vl~~~~~~~lGG~~~d~~l~~~l~ 244 (768)
|.+ +.+.-....+.|++++.-+...+.
T Consensus 182 gyV-igScik~iPiagrdiT~fiQ~llR 208 (415)
T KOG0678|consen 182 GYV-IGSCIKHIPIAGRDITYFIQQLLR 208 (415)
T ss_pred ceE-EeeeeccccccCCchhHHHHHHhh
Confidence 332 444455788999999987776664
No 211
>PLN03173 chalcone synthase; Provisional
Probab=41.75 E-value=74 Score=35.10 Aligned_cols=50 Identities=16% Similarity=0.192 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCcCEEEEecCCC-ChHHHHHHHHhhcCCC
Q 004210 310 SLLERMRIPCQKALAGSGLNVEKIHSVELVGSGS-RIPAISRMLNSLFNRE 359 (768)
Q Consensus 310 ~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~s-rip~v~~~l~~~fg~~ 359 (768)
...+-..+.++++|+++|+.+++|+.|+.+..+. ..|.+--.|.+.+|..
T Consensus 101 ~a~~La~~Aa~~AL~~ag~~~~dId~li~~t~t~~~~P~~a~~l~~~LGl~ 151 (391)
T PLN03173 101 EVPKLGKEAAAKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLR 151 (391)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCcccHHHHHHHHHhCCC
Confidence 3444555678899999999999999998887554 6899999999999843
No 212
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=41.67 E-value=22 Score=33.43 Aligned_cols=17 Identities=24% Similarity=0.524 Sum_probs=15.9
Q ss_pred EEEEEcCccceEEEEEE
Q 004210 3 VVGFDIGNENCVIAAVK 19 (768)
Q Consensus 3 viGID~Gtt~s~va~~~ 19 (768)
|+|||.|++++..|++.
T Consensus 2 ILGIDPGl~~~G~av~~ 18 (154)
T cd00529 2 ILGIDPGSRNTGYGVIE 18 (154)
T ss_pred EEEEccCcCceEEEEEE
Confidence 79999999999999975
No 213
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=41.47 E-value=17 Score=33.11 Aligned_cols=19 Identities=26% Similarity=0.518 Sum_probs=16.5
Q ss_pred EEEEcCccceEEEEEEcCC
Q 004210 4 VGFDIGNENCVIAAVKQGG 22 (768)
Q Consensus 4 iGID~Gtt~s~va~~~~~~ 22 (768)
+|||+|+..+.+|+.++.+
T Consensus 1 laiD~G~kriGvA~~d~~~ 19 (130)
T TIGR00250 1 LGLDFGTKSIGVAGQDITG 19 (130)
T ss_pred CeEccCCCeEEEEEECCCC
Confidence 6999999999999877654
No 214
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=41.37 E-value=3.6e+02 Score=26.51 Aligned_cols=23 Identities=13% Similarity=0.241 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 004210 689 RDAVIDECSKAEEWLREKVTQQD 711 (768)
Q Consensus 689 ~~~v~~~~~~~~~Wl~~~~~~q~ 711 (768)
.++|...+..-..+|...++.|.
T Consensus 142 m~PVL~~~~D~vL~LKHNLNA~A 164 (201)
T PF11172_consen 142 MQPVLAAFRDQVLYLKHNLNAQA 164 (201)
T ss_pred cChHHHHHHHHHHHHhccccHHH
Confidence 44555555555555555444443
No 215
>cd02639 R3H_RRM R3H domain of mainly fungal proteins which are associated with a RNA recognition motif (RRM) domain. Present in this group is the RNA-binding post-transcriptional regulator Cip2 (Csx1-interacting protein 2) involved in counteracting Csx1 function. Csx1 plays a central role in controlling gene expression during oxidative stress. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=41.22 E-value=64 Score=25.01 Aligned_cols=30 Identities=23% Similarity=0.231 Sum_probs=26.6
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHcCCcc
Q 004210 139 SNCVIGVPCYLTDVQRRAYLDAATIAGLKP 168 (768)
Q Consensus 139 ~~~VitVP~~~~~~qr~~l~~Aa~~AGl~~ 168 (768)
..-.++.|+.+++.+|+.+-..|...||..
T Consensus 16 ~~~eL~Fp~~ls~~eRriih~la~~lGL~~ 45 (60)
T cd02639 16 MRDELAFPSSLSPAERRIVHLLASRLGLNH 45 (60)
T ss_pred CceEEEcCCCCCHHHHHHHHHHHHHcCCce
Confidence 356677899999999999999999999975
No 216
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=40.59 E-value=79 Score=32.64 Aligned_cols=47 Identities=13% Similarity=0.047 Sum_probs=37.0
Q ss_pred CCCCcCEEEEecCCCChHHHHHHHHhhcC----CCCCCcCChhhHHHhHHH
Q 004210 329 NVEKIHSVELVGSGSRIPAISRMLNSLFN----REPGRTINASECVARGCA 375 (768)
Q Consensus 329 ~~~~i~~V~LvGG~srip~v~~~l~~~fg----~~v~~~~n~~eava~Gaa 375 (768)
-+..+|.|+|+||.++...+-++|.+... .-+...-+-.+|.|.|+.
T Consensus 293 L~G~vDaIvLTGGiA~~~~f~~~I~~~v~~iapv~v~PGE~EleALA~G~l 343 (358)
T COG3426 293 LKGKVDAIVLTGGIAYEKLFVDAIEDRVSWIAPVIVYPGEDELEALAEGAL 343 (358)
T ss_pred cCCCCCEEEEecchhhHHHHHHHHHHHHhhhcceEecCCchHHHHHHhhhH
Confidence 34479999999999999999999988774 233445567789999985
No 217
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=40.50 E-value=2.3e+02 Score=33.20 Aligned_cols=24 Identities=8% Similarity=-0.021 Sum_probs=20.6
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHH
Q 004210 682 HSLPSKVRDAVIDECSKAEEWLRE 705 (768)
Q Consensus 682 ~~~~~ee~~~v~~~~~~~~~Wl~~ 705 (768)
..++.++++.+...+++.+.||+.
T Consensus 530 ~~l~~~~~~~i~~~~~~~~~~l~~ 553 (595)
T PRK01433 530 TLLSESEISIINSLLDNIKEAVHA 553 (595)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhc
Confidence 347889999999999999999963
No 218
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=40.33 E-value=8.8e+02 Score=30.83 Aligned_cols=46 Identities=9% Similarity=0.107 Sum_probs=27.3
Q ss_pred CCCHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHHHHHHHh
Q 004210 554 GMTKTELSEAVEKEHQLVQQDLKMERTKDRKNALESYVYEMRDKIS 599 (768)
Q Consensus 554 ~ls~~e~~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~ 599 (768)
.+++.++..+.+........+.....+.+-...++.-++.++..|.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~nL~r~~d~l~el~~ql~ 196 (1179)
T TIGR02168 151 EAKPEERRAIFEEAAGISKYKERRKETERKLERTRENLDRLEDILN 196 (1179)
T ss_pred cCCHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666665555555555555555555555666666554
No 219
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []. This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....
Probab=40.33 E-value=1e+02 Score=29.43 Aligned_cols=88 Identities=15% Similarity=0.215 Sum_probs=51.3
Q ss_pred cHHHHHHHHHHHHHHHHHhhccCCCCeEEEEeCCCCCHHH----------------HHHHHHHHHHcCCcceEeccchHH
Q 004210 114 TPVQILGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDVQ----------------RRAYLDAATIAGLKPLRLMHDCTA 177 (768)
Q Consensus 114 ~~~el~a~~L~~l~~~a~~~~~~~~~~~VitVP~~~~~~q----------------r~~l~~Aa~~AGl~~~~li~Ep~A 177 (768)
++++++..+...+.+..... +.. .+.|++|...+... .+.+.+. .+++ +.+.|+..|
T Consensus 31 ~~~~~~~~l~~~i~~~~~~~-~~~--gIgi~~pG~v~~~~g~i~~~~~~~~~~~~l~~~l~~~---~~~p-v~i~Nd~~~ 103 (179)
T PF00480_consen 31 SPEELLDALAELIERLLADY-GRS--GIGISVPGIVDSEKGRIISSPNPGWENIPLKEELEER---FGVP-VIIENDANA 103 (179)
T ss_dssp SHHHHHHHHHHHHHHHHHHH-TCE--EEEEEESSEEETTTTEEEECSSGTGTTCEHHHHHHHH---HTSE-EEEEEHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhc-ccc--cEEEeccccCcCCCCeEEecCCCCcccCCHHHHhhcc---cceE-EEEecCCCc
Confidence 45566666665555554433 111 56666665554332 2233332 3664 489999999
Q ss_pred HHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEE
Q 004210 178 TALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVA 212 (768)
Q Consensus 178 aal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~ 212 (768)
+|++....... ....+++++-+|.| +-.+++
T Consensus 104 ~a~ae~~~~~~---~~~~~~~~l~ig~G-iG~~ii 134 (179)
T PF00480_consen 104 AALAEYWFGAA---KDCDNFLYLYIGTG-IGAGII 134 (179)
T ss_dssp HHHHHHHHSTT---TTTSSEEEEEESSS-EEEEEE
T ss_pred ceeehhhcCcc---CCcceEEEEEeecC-CCccee
Confidence 99987664422 23467888888887 455554
No 220
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=40.10 E-value=6.6e+02 Score=29.23 Aligned_cols=113 Identities=15% Similarity=0.134 Sum_probs=55.3
Q ss_pred HHHHhhHHHHHHHHHHHHhhHhhccCCHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHhHhHHHHhhHhHHH
Q 004210 581 KDRKNALESYVYEMRDKISNIYRSFATESEREGISRNLRDTEEWLYEDGDDESENVYAERLEDLKKLVDPIEGRYKDEEA 660 (768)
Q Consensus 581 ~~akN~LEs~iy~~r~~l~~~~~~~~t~~e~~~l~~~l~~~~~WL~~~g~~a~~~~~~~kl~~L~~~~~pi~~R~~e~~~ 660 (768)
.++...||...+++++.+++ --..|+..+.+.+.+.....-....| .+.+++.+.+++++.-.+-+..
T Consensus 276 ~~~~~~l~d~~~~l~~~~~~---l~~dp~~L~ele~RL~~l~~LkrKyg--~s~e~l~~~~~~l~~eL~~l~~------- 343 (563)
T TIGR00634 276 GNALTEVEEATRELQNYLDE---LEFDPERLNEIEERLAQIKRLKRKYG--ASVEEVLEYAEKIKEELDQLDD------- 343 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHHHHHhC-------
Confidence 44555555555555555543 13457778888888877766554443 3455555555555444443333
Q ss_pred HHHHHHHHHHHHHHHHHHHHh--CCCChhhHHHHHHHHHHHHHHHHH
Q 004210 661 RAQATGALLKCAMDYRKVVEA--HSLPSKVRDAVIDECSKAEEWLRE 705 (768)
Q Consensus 661 rp~a~~~l~~~l~~~~~~~~~--~~~~~ee~~~v~~~~~~~~~Wl~~ 705 (768)
....++.+++.+..++..+.. ..++...++...........||..
T Consensus 344 ~~~~le~L~~el~~l~~~l~~~a~~Ls~~R~~~a~~l~~~v~~~l~~ 390 (563)
T TIGR00634 344 SDESLEALEEEVDKLEEELDKAAVALSLIRRKAAERLAKRVEQELKA 390 (563)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333344444444333333210 112333333334444455556544
No 221
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=39.84 E-value=1.6e+02 Score=30.12 Aligned_cols=118 Identities=19% Similarity=0.088 Sum_probs=0.0
Q ss_pred chHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCCchhhHHHHHHHHHHHHHhhhccc
Q 004210 174 DCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEVLSSYFAAQFKQQYDI 253 (768)
Q Consensus 174 Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~ 253 (768)
+-.++|++..... +..++|+|+|--+|--.+ ..+..++||.
T Consensus 108 DR~~n~vaA~~~~-------~~~~vVVD~GTA~Tid~v------------~~~~~~lGG~-------------------- 148 (251)
T COG1521 108 DRIANAVAAYHKY-------GKAVVVVDFGTATTIDLV------------DEGGRYLGGA-------------------- 148 (251)
T ss_pred HHHHHHHHHHHHc-------CCcEEEEEcCCeEEEEEE------------cCCCcEeeeE--------------------
Q ss_pred CccCChHHHHHHHHHHHHHhhhccCCCcccEEEeccccCcceEEEecHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCc
Q 004210 254 DVYTNVKASIRLRASCEKLKKVLSANAEAPLNIECLMNEKDVKGFIRREEFEKLSSSLLERMRIPCQKALAGSGLNVEKI 333 (768)
Q Consensus 254 ~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~i~i~~l~~~~d~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i 333 (768)
+..-...+.+-+. ...+|.-...-...+..+. ++..+.+...++-.....|+..+++.......=
T Consensus 149 -I~PGi~l~~~aL~-~~aa~lp~~~~~~~~~~~g-------------k~T~~aiqsG~v~g~~~~i~~~~~~~k~~~~~~ 213 (251)
T COG1521 149 -ILPGITLSFEALF-ARAAKLPRVEIARPESVPG-------------KNTVEAIQSGVVYGYVGLIEGLLKEIKEELKGG 213 (251)
T ss_pred -eccCHHHHHHHHH-HHHhcCCcccccCccccCC-------------cchHHHHHHhHHHHHHHHHHHHHHHHHHHhCCC
Q ss_pred CEEEEecCCCCh
Q 004210 334 HSVELVGSGSRI 345 (768)
Q Consensus 334 ~~V~LvGG~sri 345 (768)
..++++||.+++
T Consensus 214 ~~~vltGg~~~~ 225 (251)
T COG1521 214 DAVVLTGGLAKL 225 (251)
T ss_pred CeEEEeCCchHh
No 222
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=39.46 E-value=1.4e+02 Score=33.21 Aligned_cols=54 Identities=17% Similarity=0.246 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCEEEEecCCCChHHHHHHHHhhcC
Q 004210 304 FEKLSSSLLERMRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFN 357 (768)
Q Consensus 304 fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~fg 357 (768)
++++-+-+++.+..++.+.+.++++.+++|..+.++|-++..-.+.-.=-+.++
T Consensus 55 ~~~L~~~i~~~i~~li~~l~~~~gi~~~~I~~i~i~GNt~M~hLllGl~~~~L~ 108 (412)
T PF14574_consen 55 LEELQRLIRETINELIEELLEKAGISPEDIYEIVIVGNTTMLHLLLGLDPEGLG 108 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT--GGGEEEEEEEE-HHHHHHHHT---GGGS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHeEEEEEEecHHHHHHHcCCChHHhc
Confidence 355566677888899999999999999999999999987666655544334444
No 223
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=39.21 E-value=8.9e+02 Score=30.49 Aligned_cols=21 Identities=10% Similarity=0.248 Sum_probs=13.8
Q ss_pred CCCHHHHHHHHHHHHHHhhhh
Q 004210 554 GMTKTELSEAVEKEHQLVQQD 574 (768)
Q Consensus 554 ~ls~~e~~~~~~~~~~~~~~D 574 (768)
+.+.++.+.+...+..|...-
T Consensus 774 ~~s~~~v~~le~~l~~~~~~~ 794 (1293)
T KOG0996|consen 774 GVSKESVEKLERALSKMSDKA 794 (1293)
T ss_pred CCCHHHHHHHHHHHHHHHHHH
Confidence 577777777777666655443
No 224
>PRK03918 chromosome segregation protein; Provisional
Probab=38.63 E-value=8e+02 Score=30.25 Aligned_cols=42 Identities=7% Similarity=0.040 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHHHHHHH
Q 004210 557 KTELSEAVEKEHQLVQQDLKMERTKDRKNALESYVYEMRDKI 598 (768)
Q Consensus 557 ~~e~~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l 598 (768)
+.+...+...+..+...+.......+.+..++.-+-.++..+
T Consensus 144 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 185 (880)
T PRK03918 144 DESREKVVRQILGLDDYENAYKNLGEVIKEIKRRIERLEKFI 185 (880)
T ss_pred cHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355556666655555555444444444444444444444444
No 225
>cd02646 R3H_G-patch R3H domain of a group of fungal and plant proteins with unknown function, who also contain a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the R3H domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=38.50 E-value=68 Score=24.55 Aligned_cols=40 Identities=18% Similarity=0.148 Sum_probs=29.0
Q ss_pred HHHHHHhhccCCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCcc
Q 004210 126 LKQITEKNIKIPISNCVIGVPCYLTDVQRRAYLDAATIAGLKP 168 (768)
Q Consensus 126 l~~~a~~~~~~~~~~~VitVP~~~~~~qr~~l~~Aa~~AGl~~ 168 (768)
+++..+.++... .-.++.|+ ++..+|..+.+.|...||..
T Consensus 4 i~~~i~~F~~~~--~~~~~fpp-m~~~~R~~vH~lA~~~~L~S 43 (58)
T cd02646 4 IKDEIEAFLLDS--RDSLSFPP-MDKHGRKTIHKLANCYNLKS 43 (58)
T ss_pred HHHHHHHHHhCC--CceEecCC-CCHHHHHHHHHHHHHcCCcc
Confidence 334444444333 45678999 89999999999999988874
No 226
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=38.40 E-value=7.7e+02 Score=29.56 Aligned_cols=113 Identities=18% Similarity=0.233 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHhHhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHH----------Hh
Q 004210 612 EGISRNLRDTEEWLYEDGDDESENVYAERLEDLKKLVDPIEGRYKDEEARAQATGALLKCAMDYRKVV----------EA 681 (768)
Q Consensus 612 ~~l~~~l~~~~~WL~~~g~~a~~~~~~~kl~~L~~~~~pi~~R~~e~~~rp~a~~~l~~~l~~~~~~~----------~~ 681 (768)
+.....+++++.||. .|...|..+++-+.-|+.+-+-.+--...-..|.+.|+.+...+ ..
T Consensus 40 d~a~~e~d~le~~l~---------~y~~~L~~~~~di~~IE~qn~~Lqvq~~N~k~L~~eL~~Ll~~l~i~~~~l~~L~~ 110 (701)
T PF09763_consen 40 DEALAECDELESWLS---------LYDVELNSVRDDIEYIESQNNGLQVQSANQKLLLNELENLLDTLSIPEEHLEALRN 110 (701)
T ss_pred HHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhc
Confidence 666777788888884 46677777777777777655544444444444555444443333 00
Q ss_pred CCCChhh-HHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcc-cHHHHHHHHHHHHHHh
Q 004210 682 HSLPSKV-RDAVIDECSKAEEWLREKVTQQDSLPKDADPIL-WSTEIKRKSEALDLTC 737 (768)
Q Consensus 682 ~~~~~ee-~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~-~~~di~~k~~~l~~~~ 737 (768)
..++..+ +..+ .+.-.||...+..-+......+|-+ ...-+..+...+++..
T Consensus 111 ~~l~~~~~l~~~----e~a~~~L~~Al~~i~~~~~~~~~~~~~M~Av~er~~~~~~~~ 164 (701)
T PF09763_consen 111 ASLSSPDGLEKI----EEAAEALYKALKAIRPDLEKLDPGLGQMRAVKERREEYEKVS 164 (701)
T ss_pred CCCCCcccHHHH----HHHHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHHHHHHH
Confidence 1132222 3333 4456666666655333322556655 7778888887777643
No 227
>PRK03918 chromosome segregation protein; Provisional
Probab=38.34 E-value=8.5e+02 Score=30.02 Aligned_cols=13 Identities=8% Similarity=0.309 Sum_probs=6.4
Q ss_pred EEEec--CCCChHHH
Q 004210 336 VELVG--SGSRIPAI 348 (768)
Q Consensus 336 V~LvG--G~srip~v 348 (768)
.+++| |++..-.+
T Consensus 26 ~~i~G~nG~GKStil 40 (880)
T PRK03918 26 NLIIGQNGSGKSSIL 40 (880)
T ss_pred EEEEcCCCCCHHHHH
Confidence 34555 45554444
No 228
>PLN03172 chalcone synthase family protein; Provisional
Probab=38.12 E-value=82 Score=34.79 Aligned_cols=52 Identities=15% Similarity=0.177 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCcCEEEEecCCC-ChHHHHHHHHhhcCCC
Q 004210 308 SSSLLERMRIPCQKALAGSGLNVEKIHSVELVGSGS-RIPAISRMLNSLFNRE 359 (768)
Q Consensus 308 ~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~s-rip~v~~~l~~~fg~~ 359 (768)
.+...+-..+..+++|+++|+.+++|+.|+++..+. .+|.+--.|.+.+|.+
T Consensus 99 ~~~a~~La~~Aa~~aL~~ag~~~~dId~ii~~t~t~~~~P~~a~~l~~~LGl~ 151 (393)
T PLN03172 99 VVEVPKLGKEAAAKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLK 151 (393)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCcCchHHHHHHHHhCCC
Confidence 334455556678899999999999999998777555 6999999999999843
No 229
>PLN02854 3-ketoacyl-CoA synthase
Probab=37.47 E-value=76 Score=36.29 Aligned_cols=54 Identities=11% Similarity=0.110 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCcCEEEE-ecCCCChHHHHHHHHhhcCCC
Q 004210 306 KLSSSLLERMRIPCQKALAGSGLNVEKIHSVEL-VGSGSRIPAISRMLNSLFNRE 359 (768)
Q Consensus 306 ~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~L-vGG~srip~v~~~l~~~fg~~ 359 (768)
..-++.-.-+...++++|+++|+++++||.|++ +.+....|.+-.+|.+.+|.+
T Consensus 183 ~~r~ea~~v~~~~~~~lL~kaGi~p~dID~LIv~cS~~~p~PSlAa~I~n~LGlr 237 (521)
T PLN02854 183 EARAEAEAVMFGALDSLFSKTGVKPRDIGILIVNCSLFNPTPSLSAMIVNHYKLR 237 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCCHHHHHHHHhCCC
Confidence 333334444556778899999999999999987 334445899999999999843
No 230
>PF02801 Ketoacyl-synt_C: Beta-ketoacyl synthase, C-terminal domain; InterPro: IPR014031 Beta-ketoacyl-ACP synthase 2.3.1.41 from EC (KAS) [] is the enzyme that catalyzes the condensation of malonyl-ACP with the growing fatty acid chain. It is found as a component of a number of enzymatic systems, including fatty acid synthetase (FAS), which catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH; the multi-functional 6-methysalicylic acid synthase (MSAS) from Penicillium patulum [], which is involved in the biosynthesis of a polyketide antibiotic; polyketide antibiotic synthase enzyme systems; Emericella nidulans multifunctional protein Wa, which is involved in the biosynthesis of conidial green pigment; Rhizobium nodulation protein nodE, which probably acts as a beta-ketoacyl synthase in the synthesis of the nodulation Nod factor fatty acyl chain; and yeast mitochondrial protein CEM1. The condensation reaction is a two step process, first the acyl component of an activated acyl primer is transferred to a cysteine residue of the enzyme and is then condensed with an activated malonyl donor with the concomitant release of carbon dioxide. This entry represents the C-terminal domain of beta-ketoacyl-ACP synthases. The active site is contained in a cleft betweeen N- and C-terminal domains, with residues from both domains contributing to substrate binding and catalysis [].; PDB: 2UV8_B 3HMJ_A 2VKZ_C 4EWG_A 1TQY_H 1E5M_A 1J3N_B 2VZ8_A 2VZ9_B 3O04_A ....
Probab=37.09 E-value=36 Score=30.35 Aligned_cols=45 Identities=24% Similarity=0.443 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHhcCCCCCCcCEEEEecCCCChH--HHHHHHHhhcC
Q 004210 313 ERMRIPCQKALAGSGLNVEKIHSVELVGSGSRIP--AISRMLNSLFN 357 (768)
Q Consensus 313 ~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~srip--~v~~~l~~~fg 357 (768)
..+...|+++|+++++.+++|+.|...|-++..- .=.+.|.+.|+
T Consensus 25 ~~~~~~i~~al~~agi~~~~I~~i~~hg~Gt~~~D~~E~~ai~~~~~ 71 (119)
T PF02801_consen 25 AALARAIRRALADAGISPEDIDYIEAHGTGTPLGDAAEAEAIARVFG 71 (119)
T ss_dssp HHHHHHHHHHHHHHTS-GGGEEEEE----SSHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHhhhccccccceeeeeeccccccchhhhhhhhhhhhc
Confidence 3456679999999999999999999999888753 33345777775
No 231
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=37.04 E-value=3.5e+02 Score=25.73 Aligned_cols=91 Identities=13% Similarity=0.094 Sum_probs=42.0
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHhHhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 004210 604 SFATESEREGISRNLRDTEEWLYEDGDDESENVYAERLEDLKKLVDPIEGRYKDEEARAQATGALLKCAMDYRKVVEAHS 683 (768)
Q Consensus 604 ~~~t~~e~~~l~~~l~~~~~WL~~~g~~a~~~~~~~kl~~L~~~~~pi~~R~~e~~~rp~a~~~l~~~l~~~~~~~~~~~ 683 (768)
+..++++...+...+.+..+=+..- ......+...|..|.+... ...........-.-+..+...|..++.-. ..
T Consensus 67 ~~~s~eel~~ld~ei~~L~~el~~l--~~~~k~l~~eL~~L~~~~t-~~el~~~i~~l~~e~~~l~~kL~~l~~~~--~~ 141 (169)
T PF07106_consen 67 EVPSPEELAELDAEIKELREELAEL--KKEVKSLEAELASLSSEPT-NEELREEIEELEEEIEELEEKLEKLRSGS--KP 141 (169)
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CC
Confidence 3446667777766666655544332 1111222222222222111 11122222233333444444444444422 44
Q ss_pred CChhhHHHHHHHHHHH
Q 004210 684 LPSKVRDAVIDECSKA 699 (768)
Q Consensus 684 ~~~ee~~~v~~~~~~~ 699 (768)
+++++++.+.......
T Consensus 142 vs~ee~~~~~~~~~~~ 157 (169)
T PF07106_consen 142 VSPEEKEKLEKEYKKW 157 (169)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 8999999888765443
No 232
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=37.04 E-value=7.1e+02 Score=28.76 Aligned_cols=76 Identities=11% Similarity=0.109 Sum_probs=37.1
Q ss_pred CCCHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHHHHHHHhh--HhhccC-----------CHHHHHHHHHHHHH
Q 004210 554 GMTKTELSEAVEKEHQLVQQDLKMERTKDRKNALESYVYEMRDKISN--IYRSFA-----------TESEREGISRNLRD 620 (768)
Q Consensus 554 ~ls~~e~~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~--~~~~~~-----------t~~e~~~l~~~l~~ 620 (768)
+........+.+....+.+.++....+.....+++.-+--++-.+++ .+..-. .=...+++...+..
T Consensus 150 ~~~~~~~~~~~~~y~~w~~~~~~l~~~~~~~~e~~~~~d~L~fq~~Ele~~~l~~gE~e~L~~e~~rLsn~ekl~~~~~~ 229 (557)
T COG0497 150 GLEELAQEAYQEAYQAWKQARRELEDLQEKERERAQRADLLQFQLEELEELNLQPGEDEELEEERKRLSNSEKLAEAIQN 229 (557)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhhHHHHHHHHHH
Confidence 34444434455666666666665555555544444444444444432 111111 11123556666777
Q ss_pred HHHHHhhcC
Q 004210 621 TEEWLYEDG 629 (768)
Q Consensus 621 ~~~WL~~~g 629 (768)
+.+-|++++
T Consensus 230 a~~~L~ge~ 238 (557)
T COG0497 230 ALELLSGED 238 (557)
T ss_pred HHHHHhCCC
Confidence 777777543
No 233
>PF15043 CNRIP1: CB1 cannabinoid receptor-interacting protein 1
Probab=36.72 E-value=3.7e+02 Score=25.38 Aligned_cols=71 Identities=10% Similarity=0.205 Sum_probs=46.8
Q ss_pred CCCCCceeEEEEeecCceEEEEEEe----------ccccCCC-------CCCCcceeEEecCCCCCCCC-cceEEEEEEE
Q 004210 421 GQPFPSVKILTLHRSNGFQLQAFYA----------DQNELPS-------VVSPQISSFMIGPFQTSHAE-TARVKVRVHL 482 (768)
Q Consensus 421 g~~~p~~k~~~f~~~~~~~i~~~~~----------~~~~~~~-------~~~~~i~~~~i~~~~~~~~~-~~~i~v~~~~ 482 (768)
|..+...+++.+.+...+.+.+..- ++..++. ....+-|.|.-.|+++...| -..|.|.+.+
T Consensus 29 G~RF~q~RTiKl~tdskYkv~V~~kP~~~~~~~~igg~~~~l~~ks~d~~~~vYs~~~~T~G~~~TKsG~Rq~i~i~~~f 108 (161)
T PF15043_consen 29 GQRFGQNRTIKLLTDSKYKVDVTIKPPTVETSLSIGGVSLPLEEKSRDEQSVVYSGQYDTEGVPPTKSGERQPIQISMQF 108 (161)
T ss_pred ccccCCceEEEEecCCEEEEEEEEcCCcceeeeEecceeeceeecccCCCeeEEEEEeecCCCCcccCCccccEEEEEEe
Confidence 7778777888877665544444321 1112222 22457788888999887544 3579999999
Q ss_pred cCCccEEEE
Q 004210 483 DLDGVVRVQ 491 (768)
Q Consensus 483 d~~Gil~v~ 491 (768)
+..|.+.+.
T Consensus 109 ~~~g~~~~~ 117 (161)
T PF15043_consen 109 NPGGTLETV 117 (161)
T ss_pred cCcceEEEE
Confidence 999988754
No 234
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=36.43 E-value=8e+02 Score=29.14 Aligned_cols=68 Identities=18% Similarity=0.182 Sum_probs=32.2
Q ss_pred CCCHHHHHHHHHHHHHHh-hhhhhHHHHHHHHhhHHHHHHHHHHHHhhHhhccCCHHHHHHHHHHHHHHHHHH
Q 004210 554 GMTKTELSEAVEKEHQLV-QQDLKMERTKDRKNALESYVYEMRDKISNIYRSFATESEREGISRNLRDTEEWL 625 (768)
Q Consensus 554 ~ls~~e~~~~~~~~~~~~-~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~t~~e~~~l~~~l~~~~~WL 625 (768)
.++..++..+...+.... .......+..+....+|.-+-.+..+|.. .-.+++.+.+.+.+++++.=+
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~el~~l~~~l~~----~~~~e~i~~l~e~l~~l~~~l 437 (650)
T TIGR03185 369 RLSGSELTQLEVLIQQVKRELQDAKSQLLKELRELEEELAEVDKKIST----IPSEEQIAQLLEELGEAQNEL 437 (650)
T ss_pred cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCChHHHHHHHHHHHHHHHHH
Confidence 355555554433333333 12223334444555566666666666642 223445555555555554444
No 235
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=35.60 E-value=5.1e+02 Score=31.59 Aligned_cols=37 Identities=14% Similarity=0.127 Sum_probs=19.7
Q ss_pred CCCHHHHHHHHHHHHHHh-hhhhhHHHHHHHHhhHHHH
Q 004210 554 GMTKTELSEAVEKEHQLV-QQDLKMERTKDRKNALESY 590 (768)
Q Consensus 554 ~ls~~e~~~~~~~~~~~~-~~D~~~~~~~~akN~LEs~ 590 (768)
+++.+-++.+.+.+..-. .-++....+++.+..+|..
T Consensus 498 Glp~~ii~~A~~~~~~~~~~~~~li~~l~~~~~~~e~~ 535 (782)
T PRK00409 498 GLPENIIEEAKKLIGEDKEKLNELIASLEELERELEQK 535 (782)
T ss_pred CcCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 688888888877654322 2233333334444444433
No 236
>PRK00292 glk glucokinase; Provisional
Probab=35.25 E-value=34 Score=36.46 Aligned_cols=50 Identities=22% Similarity=0.174 Sum_probs=30.4
Q ss_pred HHcCCcceEeccchHHHHHHhhhccc----CCCC-C--CCcEEEEEEeCCceEEEEEE
Q 004210 162 TIAGLKPLRLMHDCTATALGYGIYKT----DFSN-V--GPTYVVFVDIGHCDTQVCVA 212 (768)
Q Consensus 162 ~~AGl~~~~li~Ep~Aaal~y~~~~~----~~~~-~--~~~~vlv~D~GggT~dvsv~ 212 (768)
+..|++.+.+.|+..|+|++-..... .+.. . ...+++++-+|.| +-.+++
T Consensus 88 ~~~~~p~v~l~ND~~aaalgE~~~~~~~~~~~g~~~~~~~~~~~~v~~GTG-iG~giv 144 (316)
T PRK00292 88 QELGLDHLLLINDFTAQALAIPRLGEEDLVQIGGGEPVPGAPIAVIGPGTG-LGVAGL 144 (316)
T ss_pred HHhCCCeEEEEecHHHHHcccccCCHhheeEeCCCCCCCCCcEEEEEcCCc-ceEEEE
Confidence 34588767999999999987543210 0000 1 1367888888877 334433
No 237
>PRK04863 mukB cell division protein MukB; Provisional
Probab=34.86 E-value=1.2e+03 Score=30.77 Aligned_cols=18 Identities=6% Similarity=0.208 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 004210 610 EREGISRNLRDTEEWLYE 627 (768)
Q Consensus 610 e~~~l~~~l~~~~~WL~~ 627 (768)
..+.|...++.+..|+..
T Consensus 322 rL~kLEkQaEkA~kyleL 339 (1486)
T PRK04863 322 AESDLEQDYQAASDHLNL 339 (1486)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345555555555555543
No 238
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=34.50 E-value=9.1e+02 Score=30.75 Aligned_cols=46 Identities=15% Similarity=0.202 Sum_probs=24.6
Q ss_pred CCCHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHHHHHHHh
Q 004210 554 GMTKTELSEAVEKEHQLVQQDLKMERTKDRKNALESYVYEMRDKIS 599 (768)
Q Consensus 554 ~ls~~e~~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~ 599 (768)
.+++.+...+.+.+......+....+..+....++.-+.++++.+.
T Consensus 149 ~~~~~~r~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~l~el~~~~~ 194 (1164)
T TIGR02169 149 SMSPVERRKIIDEIAGVAEFDRKKEKALEELEEVEENIERLDLIID 194 (1164)
T ss_pred CCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667776666666655555544444444444444444555554443
No 239
>PF04848 Pox_A22: Poxvirus A22 protein; InterPro: IPR006932 This family, representing the Poxvirus A22 protein, is a Holliday junction resolvase, it specifically cleaves and resolves four-way DNA Holliday junctions into linear duplex products. ; GO: 0000287 magnesium ion binding, 0000400 four-way junction DNA binding, 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination
Probab=34.37 E-value=44 Score=30.97 Aligned_cols=21 Identities=24% Similarity=0.395 Sum_probs=18.8
Q ss_pred CeEEEEEcCccceEEEEEEcC
Q 004210 1 MSVVGFDIGNENCVIAAVKQG 21 (768)
Q Consensus 1 m~viGID~Gtt~s~va~~~~~ 21 (768)
|.|++||+|+-|...+++...
T Consensus 1 mii~sIDiGikNlA~~iie~~ 21 (143)
T PF04848_consen 1 MIILSIDIGIKNLAYCIIEFE 21 (143)
T ss_pred CeEEEEecCCCceeEEEEEcC
Confidence 889999999999999998753
No 240
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=34.05 E-value=1.3e+02 Score=35.05 Aligned_cols=66 Identities=17% Similarity=0.305 Sum_probs=48.0
Q ss_pred HHHHHhhHHHHHHHHHHHHhhHhhccCCHHHHHHHHHHHHHHHHHHhhcC-------CCc---cHHHHHHHHHHHHHhHh
Q 004210 580 TKDRKNALESYVYEMRDKISNIYRSFATESEREGISRNLRDTEEWLYEDG-------DDE---SENVYAERLEDLKKLVD 649 (768)
Q Consensus 580 ~~~akN~LEs~iy~~r~~l~~~~~~~~t~~e~~~l~~~l~~~~~WL~~~g-------~~a---~~~~~~~kl~~L~~~~~ 649 (768)
+-.+..+|+..|-.+|..+++ +.++....+++.+.|+...- -.+ ..++...+.++|.+.+.
T Consensus 650 r~k~~d~~~~~i~~~r~~~~~---------~~~k~~~~~~~a~kw~~~~~~~q~~~~~t~~pv~~~e~~~~~~~l~~~~~ 720 (727)
T KOG0103|consen 650 RPKAFDELGKKIQEIRKAIES---------EMEKVLLEIEEAEKWLERKSNKQNKLSKTADPVPSSEIESEAKELNNTCS 720 (727)
T ss_pred hhHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCchHHHHHhhhhhccccc
Confidence 345666677777776666643 77888899999999998641 112 34788889999999998
Q ss_pred HHHHh
Q 004210 650 PIEGR 654 (768)
Q Consensus 650 pi~~R 654 (768)
||..+
T Consensus 721 ~i~~~ 725 (727)
T KOG0103|consen 721 DIISK 725 (727)
T ss_pred ccccc
Confidence 88764
No 241
>PLN03168 chalcone synthase; Provisional
Probab=33.72 E-value=97 Score=34.17 Aligned_cols=55 Identities=15% Similarity=0.186 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCcCEEEEecCC-CChHHHHHHHHhhcCCC
Q 004210 305 EKLSSSLLERMRIPCQKALAGSGLNVEKIHSVELVGSG-SRIPAISRMLNSLFNRE 359 (768)
Q Consensus 305 e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~-srip~v~~~l~~~fg~~ 359 (768)
+...+...+-..+..+++|+++|+++++|+.|+++-.+ -.+|.+--.|.+.+|.+
T Consensus 95 ~~~~~~a~~La~~Aa~~AL~~ag~~~~dId~lI~~T~Tg~~~Ps~a~~l~~~LGl~ 150 (389)
T PLN03168 95 DIVVVQVPKLAAEAAQKAIKEWGGRKSDITHIVFATTSGVNMPGADHALAKLLGLK 150 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCccHHHHHHHHhCcC
Confidence 33334455555677899999999999999999877433 35899999999999843
No 242
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=33.11 E-value=7.2e+02 Score=28.87 Aligned_cols=12 Identities=17% Similarity=0.174 Sum_probs=6.9
Q ss_pred ccceeeEEEecC
Q 004210 395 SFPFSIGFSSEK 406 (768)
Q Consensus 395 ~~~~~i~i~~~~ 406 (768)
..++++++++.+
T Consensus 52 lslfpl~l~i~g 63 (555)
T TIGR03545 52 TGLFPLQLSIQG 63 (555)
T ss_pred eeecCCeEEEee
Confidence 355666666653
No 243
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=32.98 E-value=7.6e+02 Score=27.89 Aligned_cols=43 Identities=19% Similarity=0.173 Sum_probs=35.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccHHHHHH
Q 004210 686 SKVRDAVIDECSKAEEWLREKVTQQDSLPKDADPILWSTEIKR 728 (768)
Q Consensus 686 ~ee~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~ 728 (768)
..|...+.++..+-...|.+..+..+.+-....|-+.+.....
T Consensus 274 ~aE~~EleDkyAE~m~~~~EaeeELk~lrs~~~p~~~s~~~~~ 316 (596)
T KOG4360|consen 274 TAELEELEDKYAECMQMLHEAEEELKCLRSCDAPKLISQEALS 316 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHHHHH
Confidence 3466788888889999999999999999999999888776543
No 244
>PRK13331 pantothenate kinase; Reviewed
Probab=32.90 E-value=40 Score=34.54 Aligned_cols=22 Identities=14% Similarity=0.031 Sum_probs=19.0
Q ss_pred CeEEEEEcCccceEEEEEEcCC
Q 004210 1 MSVVGFDIGNENCVIAAVKQGG 22 (768)
Q Consensus 1 m~viGID~Gtt~s~va~~~~~~ 22 (768)
|-++.||+|+|++++++++.+.
T Consensus 7 ~~~L~iDiGNT~~~~g~f~~~~ 28 (251)
T PRK13331 7 NEWLALMIGNSRLHWGYFSGET 28 (251)
T ss_pred CcEEEEEeCCCcEEEEEEECCE
Confidence 4589999999999999998554
No 245
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=32.88 E-value=22 Score=35.31 Aligned_cols=35 Identities=20% Similarity=0.144 Sum_probs=24.6
Q ss_pred CHHHHHHHHHHHHHcCCc---ceEeccchHHHHHHhhh
Q 004210 150 TDVQRRAYLDAATIAGLK---PLRLMHDCTATALGYGI 184 (768)
Q Consensus 150 ~~~qr~~l~~Aa~~AGl~---~~~li~Ep~Aaal~y~~ 184 (768)
...-.+.+.+|....|++ ++.++|+.+|..++.++
T Consensus 167 G~dv~~lL~~al~r~~~~~v~v~aivNDTVgTLla~~Y 204 (206)
T PF00349_consen 167 GKDVVELLQDALKRRGLPNVKVVAIVNDTVGTLLAGAY 204 (206)
T ss_dssp TSBHHHHHHHHHHHHTSSEEEEEEEE-HHHHHHHHHHT
T ss_pred CCccchhHHHHHHHhcccCcceEEEEECCHHHhhhhhc
Confidence 333456677777777765 78899999999887654
No 246
>PF06840 DUF1241: Protein of unknown function (DUF1241); InterPro: IPR009652 This family consists of several programmed cell death 10 protein (PDCD10 or TFAR15) sequences. The function of this family is unknown.; PDB: 3L8I_A 3RQG_B 3RQE_B 3L8J_A 3RQF_B 3AJM_B.
Probab=32.85 E-value=3.4e+02 Score=25.49 Aligned_cols=35 Identities=17% Similarity=0.205 Sum_probs=29.5
Q ss_pred HHHHhHhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHH
Q 004210 643 DLKKLVDPIEGRYKDEEARAQATGALLKCAMDYRKVV 679 (768)
Q Consensus 643 ~L~~~~~pi~~R~~e~~~rp~a~~~l~~~l~~~~~~~ 679 (768)
-|.-+..|+..++.. ....|++.|+.++..+++..
T Consensus 12 ~L~~li~Pvl~eL~~--~d~~A~q~Lr~Af~kAE~~~ 46 (154)
T PF06840_consen 12 ALQCLIRPVLDELEQ--KDSDAIQTLRAAFTKAEKSS 46 (154)
T ss_dssp HHHHTHHHHHHHHHT--THHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHhC
Confidence 477889999999888 66669999999999888754
No 247
>PRK12440 acetate kinase; Reviewed
Probab=32.80 E-value=3.5e+02 Score=29.77 Aligned_cols=46 Identities=13% Similarity=0.063 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCcCEEEEecCCCChHH-HHHHHHhhcC
Q 004210 308 SSSLLERMRIPCQKALAGSGLNVEKIHSVELVGSGSRIPA-ISRMLNSLFN 357 (768)
Q Consensus 308 ~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~-v~~~l~~~fg 357 (768)
++-++.++.+.|-......+ .+|.|+++||-+.... +++.+.+.++
T Consensus 300 ~d~f~yri~k~Ig~~~a~l~----gvDaiVFTgGIGen~~~vr~~i~~~l~ 346 (397)
T PRK12440 300 FEVFTYRVAKYIASYLAALD----SLDGIIFTGGIGENSLPIRREILKNLK 346 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhC----CCCEEEECCccccCcHHHHHHHHhhhh
Confidence 33455566666655554433 5999999999887766 9999987764
No 248
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=32.53 E-value=51 Score=31.81 Aligned_cols=18 Identities=17% Similarity=0.392 Sum_probs=16.9
Q ss_pred EEEEcCccceEEEEEEcC
Q 004210 4 VGFDIGNENCVIAAVKQG 21 (768)
Q Consensus 4 iGID~Gtt~s~va~~~~~ 21 (768)
||||.|.|||=+.+++++
T Consensus 2 igIDvGGT~TD~v~~d~~ 19 (176)
T PF05378_consen 2 IGIDVGGTFTDAVLLDED 19 (176)
T ss_pred eeEecCCCcEEEEEEeCC
Confidence 799999999999999887
No 249
>KOG1369 consensus Hexokinase [Carbohydrate transport and metabolism]
Probab=32.09 E-value=1.7e+02 Score=32.86 Aligned_cols=27 Identities=15% Similarity=0.263 Sum_probs=23.6
Q ss_pred CCCcEEEEEEeCCceEEEEEEEeeCCe
Q 004210 192 VGPTYVVFVDIGHCDTQVCVASYENGH 218 (768)
Q Consensus 192 ~~~~~vlv~D~GggT~dvsv~~~~~~~ 218 (768)
++.+.++.+|+||..+-|..+.+.++.
T Consensus 83 ~E~G~~lalDLGGTn~Rv~~v~L~g~~ 109 (474)
T KOG1369|consen 83 TEKGKFLALDLGGTNFRVLLVKLGGGR 109 (474)
T ss_pred CcCCCEEEEecCCCceEEEEEEecCCc
Confidence 456779999999999999999998763
No 250
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=31.46 E-value=3e+02 Score=22.74 Aligned_cols=44 Identities=25% Similarity=0.281 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHhHhHHHHhh
Q 004210 612 EGISRNLRDTEEWLYEDGDDESENVYAERLEDLKKLVDPIEGRY 655 (768)
Q Consensus 612 ~~l~~~l~~~~~WL~~~g~~a~~~~~~~kl~~L~~~~~pi~~R~ 655 (768)
+.+..-|.+++.+|...+...+.......+..++.+..-|..+.
T Consensus 11 ~~l~~Wl~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~ei~~~~ 54 (105)
T PF00435_consen 11 DELLDWLQETEAKLSSSEPGSDLEELEEQLKKHKELQEEIESRQ 54 (105)
T ss_dssp HHHHHHHHHHHHHHCSCTHSSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhhhhHHHHHH
Confidence 33444444444444222223455666666666666655555443
No 251
>PRK13326 pantothenate kinase; Reviewed
Probab=31.28 E-value=44 Score=34.58 Aligned_cols=21 Identities=33% Similarity=0.340 Sum_probs=18.5
Q ss_pred eEEEEEcCccceEEEEEEcCC
Q 004210 2 SVVGFDIGNENCVIAAVKQGG 22 (768)
Q Consensus 2 ~viGID~Gtt~s~va~~~~~~ 22 (768)
.++.||+|+|++++++++.++
T Consensus 7 ~~L~IDiGNT~ik~glf~~~~ 27 (262)
T PRK13326 7 SQLIIDIGNTSISFALYKDNK 27 (262)
T ss_pred EEEEEEeCCCeEEEEEEECCE
Confidence 478999999999999998655
No 252
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=31.00 E-value=9e+02 Score=28.14 Aligned_cols=164 Identities=15% Similarity=0.169 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHHHHHHHhh---HhhccCC--HHHHHHHHHHHHHHHHHHhhcCCC
Q 004210 557 KTELSEAVEKEHQLVQQDLKMERTKDRKNALESYVYEMRDKISN---IYRSFAT--ESEREGISRNLRDTEEWLYEDGDD 631 (768)
Q Consensus 557 ~~e~~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~---~~~~~~t--~~e~~~l~~~l~~~~~WL~~~g~~ 631 (768)
.+++..+.+.+..+...+..-+ .+-..|...--.+|..|.. .|.+... +...+.+....++..+|.......
T Consensus 118 e~~~~~i~~~l~~l~~~e~~nr---~~v~~l~~~y~~~rk~ll~~~~~~G~a~~~le~~l~~~e~~f~~f~~l~~~Gd~~ 194 (569)
T PRK04778 118 EEDIEQILEELQELLESEEKNR---EEVEQLKDLYRELRKSLLANRFSFGPALDELEKQLENLEEEFSQFVELTESGDYV 194 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHhcCCCHH
Q ss_pred ccHH---HHHHHHHHHHHhHhHHHHhhHhHHH-HHHHHHHHHHHHHHHHHHHHhCCCC----hhhHHHHHHHHHHHHHHH
Q 004210 632 ESEN---VYAERLEDLKKLVDPIEGRYKDEEA-RAQATGALLKCAMDYRKVVEAHSLP----SKVRDAVIDECSKAEEWL 703 (768)
Q Consensus 632 a~~~---~~~~kl~~L~~~~~pi~~R~~e~~~-rp~a~~~l~~~l~~~~~~~~~~~~~----~ee~~~v~~~~~~~~~Wl 703 (768)
.-.+ .+.+.+..|+....-|-.-+.+... .|..++.|+.-.......- -.++ +.+++.+.+.+.+...-+
T Consensus 195 ~A~e~l~~l~~~~~~l~~~~~~iP~l~~~~~~~~P~ql~el~~gy~~m~~~g--y~~~~~~i~~~i~~l~~~i~~~~~~l 272 (569)
T PRK04778 195 EAREILDQLEEELAALEQIMEEIPELLKELQTELPDQLQELKAGYRELVEEG--YHLDHLDIEKEIQDLKEQIDENLALL 272 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcC--CCCCCCChHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhhhcCCCCCCCcccHHHHHHHHHHHHHHhhhh
Q 004210 704 REKVTQQDSLPKDADPILWSTEIKRKSEALDLTCKCI 740 (768)
Q Consensus 704 ~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~~~i 740 (768)
.. +...++..+.+.+...+..+
T Consensus 273 ~~---------------l~l~~~~~~~~~i~~~Id~L 294 (569)
T PRK04778 273 EE---------------LDLDEAEEKNEEIQERIDQL 294 (569)
T ss_pred Hh---------------cChHHHHHHHHHHHHHHHHH
No 253
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=30.88 E-value=54 Score=35.98 Aligned_cols=31 Identities=23% Similarity=0.450 Sum_probs=25.1
Q ss_pred CCCcEEEEEEeCCceEEEEEEEee-CCeEEEE
Q 004210 192 VGPTYVVFVDIGHCDTQVCVASYE-NGHMKIL 222 (768)
Q Consensus 192 ~~~~~vlv~D~GggT~dvsv~~~~-~~~~~vl 222 (768)
...+.+|++|+||..+-+++|++. +|.+.+.
T Consensus 72 ~e~g~~LaiD~GGTnlRvc~V~l~g~gt~~~~ 103 (466)
T COG5026 72 NESGSVLAIDLGGTNLRVCLVVLGGDGTFDIE 103 (466)
T ss_pred CCCCCEEEEecCCceEEEEEEEeCCCCCcccc
Confidence 356789999999999999999998 4555443
No 254
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=30.82 E-value=6.4e+02 Score=30.68 Aligned_cols=37 Identities=14% Similarity=0.176 Sum_probs=19.4
Q ss_pred CCCHHHHHHHHHHHHHHh-hhhhhHHHHHHHHhhHHHH
Q 004210 554 GMTKTELSEAVEKEHQLV-QQDLKMERTKDRKNALESY 590 (768)
Q Consensus 554 ~ls~~e~~~~~~~~~~~~-~~D~~~~~~~~akN~LEs~ 590 (768)
+++.+-++.+.+.+.... .-++....+++.+.++|..
T Consensus 493 Glp~~ii~~A~~~~~~~~~~~~~li~~L~~~~~~~e~~ 530 (771)
T TIGR01069 493 GIPHFIIEQAKTFYGEFKEEINVLIEKLSALEKELEQK 530 (771)
T ss_pred CcCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 688888887777655432 2233333333344444433
No 255
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=30.56 E-value=1.5e+02 Score=28.65 Aligned_cols=57 Identities=26% Similarity=0.395 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhhHhhccCCHHHHHHHHHHHHHHHHHHhhcCCC-ccHHHHHHHHHHHHHhHhHHHH
Q 004210 589 SYVYEMRDKISNIYRSFATESEREGISRNLRDTEEWLYEDGDD-ESENVYAERLEDLKKLVDPIEG 653 (768)
Q Consensus 589 s~iy~~r~~l~~~~~~~~t~~e~~~l~~~l~~~~~WL~~~g~~-a~~~~~~~kl~~L~~~~~pi~~ 653 (768)
.|+-++|..|. ..+++||+++ ++.++++++|.+++ .+.++..+.|-.-+.+.+.+..
T Consensus 5 efL~~L~~~L~-----~lp~~e~~e~---l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i~~ 62 (181)
T PF08006_consen 5 EFLNELEKYLK-----KLPEEEREEI---LEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREILA 62 (181)
T ss_pred HHHHHHHHHHH-----cCCHHHHHHH---HHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHHHH
Confidence 34445555453 2455555544 55666777665432 3455555555555555555543
No 256
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=30.47 E-value=6.2e+02 Score=26.11 Aligned_cols=39 Identities=28% Similarity=0.498 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHhH
Q 004210 608 ESEREGISRNLRDTEEWLYEDGDDESENVYAERLEDLKKLV 648 (768)
Q Consensus 608 ~~e~~~l~~~l~~~~~WL~~~g~~a~~~~~~~kl~~L~~~~ 648 (768)
...++++...|.....||.+. ..-.+.+..+.++|++-.
T Consensus 109 q~KnekLke~LerEq~wL~Eq--qql~~sL~~r~~elk~~~ 147 (268)
T PF11802_consen 109 QSKNEKLKEDLEREQQWLDEQ--QQLLESLNKRHEELKNQV 147 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhh
Confidence 455688999999999999886 233445666666666543
No 257
>KOG0797 consensus Actin-related protein [Cytoskeleton]
Probab=29.78 E-value=16 Score=40.41 Aligned_cols=50 Identities=24% Similarity=0.353 Sum_probs=38.9
Q ss_pred cCEEEEecCCCChHHHHHHHHhhcC------CC---------CCCcCChhhHHHhHHHHHhhHhc
Q 004210 333 IHSVELVGSGSRIPAISRMLNSLFN------RE---------PGRTINASECVARGCALQCAMLS 382 (768)
Q Consensus 333 i~~V~LvGG~srip~v~~~l~~~fg------~~---------v~~~~n~~eava~Gaa~~a~~ls 382 (768)
.++|.+|||+...|++.+.|++..- .+ .-+..||...+=.|||++|..-.
T Consensus 527 ~sSil~Vgga~~~~g~~~~LEeRi~n~~pp~~~~I~~VsVip~prdMdp~~VaWKGaaIla~l~~ 591 (618)
T KOG0797|consen 527 FSSILLVGGAGLFPGLVAALEERILNAIPPGREAIDTVSVIPPPRDMDPQFVAWKGAAILAILDF 591 (618)
T ss_pred hhHHHhhcccccchhHHHHHHHHHhccCCccccccCceeecCCCcCCCchheEecchhhhhHHHH
Confidence 5789999999999999999998762 11 12335788888899999987544
No 258
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=29.48 E-value=9.5e+02 Score=27.92 Aligned_cols=119 Identities=16% Similarity=0.240 Sum_probs=73.4
Q ss_pred CHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHHHHHHHhh---HhhccCC--HHHHHHHHHHHHHHHHHHhhcCC
Q 004210 556 TKTELSEAVEKEHQLVQQDLKMERTKDRKNALESYVYEMRDKISN---IYRSFAT--ESEREGISRNLRDTEEWLYEDGD 630 (768)
Q Consensus 556 s~~e~~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~---~~~~~~t--~~e~~~l~~~l~~~~~WL~~~g~ 630 (768)
..+++..+.+.+..+...+..-+ .+...|...--.+|..|.+ .|..... ++..+.+....++..+|......
T Consensus 113 ~e~~i~~i~~~l~~L~~~e~~nr---~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ie~~F~~f~~lt~~GD~ 189 (560)
T PF06160_consen 113 IEEDIKEILDELDELLESEEKNR---EEIEELKEKYRELRKELLAHSFSYGPAIEELEKQLENIEEEFSEFEELTENGDY 189 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHHHHHHCCCH
Confidence 34566666666666666655443 3344455555666776653 2333322 45566677777777777764321
Q ss_pred C---ccHHHHHHHHHHHHHhHhHHHHhhHh-HHHHHHHHHHHHHHHHHHHH
Q 004210 631 D---ESENVYAERLEDLKKLVDPIEGRYKD-EEARAQATGALLKCAMDYRK 677 (768)
Q Consensus 631 ~---a~~~~~~~kl~~L~~~~~pi~~R~~e-~~~rp~a~~~l~~~l~~~~~ 677 (768)
. .....+++.+..|+....-|-.-+.+ ....|..++.++........
T Consensus 190 ~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~gy~~m~~ 240 (560)
T PF06160_consen 190 LEAREILEKLKEETDELEEIMEDIPKLYKELQKEFPDQLEELKEGYREMEE 240 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 1 12446677778888888888887777 45789988888876655444
No 259
>PF00871 Acetate_kinase: Acetokinase family; InterPro: IPR000890 Acetate kinase, which is predominantly found in micro-organisms, facilitates the production of acetyl-CoA by phosphorylating acetate in the presence of ATP and a divalent cation [, ]. The enzyme is important in the process of glycolysis, enzyme levels being increased in the presence of excess glucose. The growth of a bacterial mutant lacking acetate kinase has been shown to be inhibited by glucose, suggesting that the enzyme is involved in excretion of excess carbohydrate []. A related enzyme, butyrate kinase, facilitates the formation of butyryl-CoA by phosphorylating butyrate in the presence of ATP to form butyryl phosphate [].; GO: 0016301 kinase activity, 0016774 phosphotransferase activity, carboxyl group as acceptor, 0008152 metabolic process, 0016310 phosphorylation, 0005622 intracellular; PDB: 3P4I_B 3R9P_B 2IIR_J 1SAZ_A 1X9J_D 4DQ8_B 1TUU_A 1TUY_B 1G99_A 1X3N_A ....
Probab=29.40 E-value=2.5e+02 Score=30.91 Aligned_cols=47 Identities=4% Similarity=-0.059 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCcCEEEEecCCCC-hHHHHHHHHhhcC
Q 004210 308 SSSLLERMRIPCQKALAGSGLNVEKIHSVELVGSGSR-IPAISRMLNSLFN 357 (768)
Q Consensus 308 ~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~sr-ip~v~~~l~~~fg 357 (768)
++-++.++.+.|-....... ..+|.|+++||.+. .+.|++.+.+.+.
T Consensus 299 ~d~~~y~i~k~Ig~~~a~l~---G~vDaivfTGGige~~~~vr~~~~~~l~ 346 (388)
T PF00871_consen 299 LDAFAYQIAKYIGAYAAVLE---GGVDAIVFTGGIGENSALVRERICRKLW 346 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHT---SS-SEEEEEHHHHHHTHHHHHHHHCTGG
T ss_pred HHHHHHHHHHHHHHHHHhhc---cCCCEEEEccccccchHHHHHHHHhhcC
Confidence 33445555555554444331 26999999999986 5789999887764
No 260
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=28.62 E-value=1.7e+02 Score=30.00 Aligned_cols=72 Identities=14% Similarity=0.268 Sum_probs=43.3
Q ss_pred EEEEEEeCCceEEEEEEEeeCC-eE----------------------EEEEEeCCCCCchhhHHHHHHHHHHHHHhhhcc
Q 004210 196 YVVFVDIGHCDTQVCVASYENG-HM----------------------KILSHAFDESLGGRDFDEVLSSYFAAQFKQQYD 252 (768)
Q Consensus 196 ~vlv~D~GggT~dvsv~~~~~~-~~----------------------~vl~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~ 252 (768)
++|++|+|.||.|+-.+.-... .+ .-+... +...||--.+.++..|+..-
T Consensus 2 kila~DvG~GTqDi~~~d~~~EnSl~mVmPspt~~~A~R~R~~~~~g~~l~l~-G~~MGGGp~travrrhlk~G------ 74 (342)
T COG4012 2 KILAIDVGVGTQDIVAYDGDPENSLRMVMPSPTSTLAQRLRFMLREGPYLALI-GVPMGGGPTTRAVRRHLKKG------ 74 (342)
T ss_pred ceEEEEecCCceeEEEecCCcccceeEeecCchHHHHHHHHHHhccCCcEEEE-eeecCCChhhHHHHHHHhcC------
Confidence 5799999999999977654310 00 011222 46789999999999988642
Q ss_pred cCccCChHHHHHHHHHHHHHhh
Q 004210 253 IDVYTNVKASIRLRASCEKLKK 274 (768)
Q Consensus 253 ~~~~~~~~~~~rL~~~ae~~K~ 274 (768)
..+-..+++-.-|...-|+++.
T Consensus 75 ~rVyatedAAlT~hddleRv~e 96 (342)
T COG4012 75 TRVYATEDAALTLHDDLERVEE 96 (342)
T ss_pred CeeEechhhhhhhhcCHHHHHh
Confidence 2222233444444444555543
No 261
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=28.60 E-value=8.6e+02 Score=27.14 Aligned_cols=115 Identities=17% Similarity=0.147 Sum_probs=65.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHhhHhhccCCHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHhH-----hHH
Q 004210 577 MERTKDRKNALESYVYEMRDKISNIYRSFATESEREGISRNLRDTEEWLYEDGDDESENVYAERLEDLKKLV-----DPI 651 (768)
Q Consensus 577 ~~~~~~akN~LEs~iy~~r~~l~~~~~~~~t~~e~~~l~~~l~~~~~WL~~~g~~a~~~~~~~kl~~L~~~~-----~pi 651 (768)
.+.+.+.||+=|++...++..- ..|. .+.+.-..++..+=.-+..||..++.-..+++=.++|+.|+.-. .++
T Consensus 403 qk~LqEsr~eKetLqlelkK~k-~nyv-~LQEry~~eiQqKnksvsqclEmdk~LskKeeeverLQ~lkgelEkat~SAL 480 (527)
T PF15066_consen 403 QKHLQESRNEKETLQLELKKIK-ANYV-HLQERYMTEIQQKNKSVSQCLEMDKTLSKKEEEVERLQQLKGELEKATTSAL 480 (527)
T ss_pred HHHHHHHHhhHHHHHHHHHHHh-hhHH-HHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677777777766665322 1111 11222234555555666777777765555556667777776322 233
Q ss_pred HHhhHhHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHH
Q 004210 652 EGRYKDEEARAQATGALLKCAMDYRKVVEAHSLPSKVRDAVIDECSKA 699 (768)
Q Consensus 652 ~~R~~e~~~rp~a~~~l~~~l~~~~~~~~~~~~~~ee~~~v~~~~~~~ 699 (768)
..-.+|.+.|.+-+-.|+.-+++.++.- .+|+++|...+.+.
T Consensus 481 dlLkrEKe~~EqefLslqeEfQk~eken------l~ERqkLKs~leKL 522 (527)
T PF15066_consen 481 DLLKREKETREQEFLSLQEEFQKHEKEN------LEERQKLKSRLEKL 522 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh------HHHHHHHHHHHHHH
Confidence 3333456667777777777776655433 46777777766543
No 262
>PLN02192 3-ketoacyl-CoA synthase
Probab=28.43 E-value=1.5e+02 Score=33.75 Aligned_cols=56 Identities=14% Similarity=0.096 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCEEEEecC-CCChHHHHHHHHhhcCCC
Q 004210 304 FEKLSSSLLERMRIPCQKALAGSGLNVEKIHSVELVGS-GSRIPAISRMLNSLFNRE 359 (768)
Q Consensus 304 fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG-~srip~v~~~l~~~fg~~ 359 (768)
++...++...-+...++++|+++|++++|||.|+.... ....|.+-.+|.+.+|.+
T Consensus 169 ~~~~~~Ea~~~~~~Aa~~aL~kaGi~p~DIDiLIv~~S~~~~~PSlaa~I~n~lGlr 225 (511)
T PLN02192 169 MAEARKEAETVMFGAIDQLLAKTSVKPKDIGILIVNCSLFNPTPSLSAMVINHYKLR 225 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCchHHHHHHHHhCCC
Confidence 34444455555667788999999999999998876532 235899999999999843
No 263
>PF05537 DUF759: Borrelia burgdorferi protein of unknown function (DUF759); InterPro: IPR008478 This entry consists of several uncharacterised proteins from Borrelia species including Borrelia burgdorferi and Borrelia garinii.
Probab=28.06 E-value=8.3e+02 Score=26.77 Aligned_cols=57 Identities=16% Similarity=0.240 Sum_probs=33.7
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccHH-H-HHHHHHHHHHHhhhhc
Q 004210 684 LPSKVRDAVIDECSKAEEWLREKVTQQDSLPKDADPILWST-E-IKRKSEALDLTCKCIM 741 (768)
Q Consensus 684 ~~~ee~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~-d-i~~k~~~l~~~~~~i~ 741 (768)
+|..=++.|++.+.+...|+.+-+.... ...=-+|++..- . +..-...|...+..++
T Consensus 351 lTt~vL~PLL~~is~IIe~VkD~i~~Ft-~t~Ii~~i~~giks~f~~iF~kLk~~lp~wm 409 (431)
T PF05537_consen 351 LTTNVLKPLLKKISEIIEWVKDYINNFT-ETHIINPIINGIKSIFAGIFDKLKSMLPKWM 409 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc-ccccchHHHHHHHHHHHHHHHHHHHHhHHhh
Confidence 4444579999999999999887666544 222223433221 1 1111455667777777
No 264
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=28.06 E-value=1.6e+02 Score=31.89 Aligned_cols=44 Identities=14% Similarity=0.084 Sum_probs=33.5
Q ss_pred CcCEEEEecCCCChHHHHHHHHhhcC--CCC--CCcCChhhHHHhHHH
Q 004210 332 KIHSVELVGSGSRIPAISRMLNSLFN--REP--GRTINASECVARGCA 375 (768)
Q Consensus 332 ~i~~V~LvGG~srip~v~~~l~~~fg--~~v--~~~~n~~eava~Gaa 375 (768)
+++.|++.||.+..+.+.+.|.+.+. .++ ....+-.++.|.||.
T Consensus 293 ~pD~IV~gGGI~e~~~l~~~I~~~l~~~a~v~~~pg~~e~~ala~ga~ 340 (351)
T TIGR02707 293 KVDAIVLTGGLAYSKYFVSEIIKRVSFIAPVLVYPGEDEMEALAEGAL 340 (351)
T ss_pred CCCEEEEcchhhcCHHHHHHHHHHHHhhCCEEEeCCcHHHHHHHHhHH
Confidence 57899999999999988899988885 333 333455678888884
No 265
>COG3894 Uncharacterized metal-binding protein [General function prediction only]
Probab=27.98 E-value=1.7e+02 Score=32.85 Aligned_cols=47 Identities=19% Similarity=0.217 Sum_probs=34.1
Q ss_pred CcEEEEEEeCCceEEEEEEEeeCCeEEEEEEe-CCCCCchhhHHHHHH
Q 004210 194 PTYVVFVDIGHCDTQVCVASYENGHMKILSHA-FDESLGGRDFDEVLS 240 (768)
Q Consensus 194 ~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~-~~~~lGG~~~d~~l~ 240 (768)
..+=+-+|+|.+++-+-++.+..+.+.-.+.. ...--||+++|.+..
T Consensus 163 ~~YGvAvDlGTS~i~aqlVDL~sgevv~t~~T~n~ql~~Ge~m~sr~~ 210 (614)
T COG3894 163 EAYGVAVDLGTSGIRAQLVDLKSGEVVATVITSNPQLPGGEVMDSRDF 210 (614)
T ss_pred eeeeeEEecccceeeeEEEeccCCcEEEeeeccCCCCCCchhhHHHHH
Confidence 34558899999999999999987754333333 233469999997764
No 266
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=27.62 E-value=8.1e+02 Score=26.53 Aligned_cols=12 Identities=33% Similarity=0.326 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHH
Q 004210 610 EREGISRNLRDT 621 (768)
Q Consensus 610 e~~~l~~~l~~~ 621 (768)
|...|...++.+
T Consensus 264 el~siRr~Cd~l 275 (442)
T PF06637_consen 264 ELESIRRTCDHL 275 (442)
T ss_pred hHHHHHHHHhhc
Confidence 355555555433
No 267
>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination []. RuvC protein (3.1.22.4 from EC) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo []. RucC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli ruvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices [].; GO: 0004520 endodeoxyribonuclease activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJR_A.
Probab=27.29 E-value=37 Score=31.76 Aligned_cols=35 Identities=26% Similarity=0.340 Sum_probs=0.0
Q ss_pred EEEEEcCccceEEEEEEcCCceEEEeCCCCCccceE
Q 004210 3 VVGFDIGNENCVIAAVKQGGMLDVLLNDESKRETPT 38 (768)
Q Consensus 3 viGID~Gtt~s~va~~~~~~~~~i~~n~~~~r~~Ps 38 (768)
|+|||-|++++..|++...+ -.+..-+.|--.+++
T Consensus 1 ILGIDPgl~~tG~avi~~~~-~~~~~i~~G~I~t~~ 35 (149)
T PF02075_consen 1 ILGIDPGLSNTGYAVIEEDG-GKLRLIDYGTIKTSS 35 (149)
T ss_dssp EEEEE--SSEEEEEEEEEET-TEEEEEEEEEEE---
T ss_pred CEEECCCCCCeeEEEEEeeC-CEEEEEEeCeEECCC
No 268
>PF09286 Pro-kuma_activ: Pro-kumamolisin, activation domain ; InterPro: IPR015366 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found at the N terminus of peptidases belonging to MEROPS peptidase family S53 (sedolisin, clan SB). The domain adopts a ferredoxin-like fold, with an alpha+beta sandwich. Cleavage of the domain results in activation of the peptidase []. ; GO: 0008236 serine-type peptidase activity; PDB: 1T1E_A 3EDY_A 3EE6_A.
Probab=27.20 E-value=81 Score=29.11 Aligned_cols=47 Identities=28% Similarity=0.441 Sum_probs=32.3
Q ss_pred HhhHHHHHHHHHHHHhhHhhccCCHHHHHHH----HHHHHHHHHHHhhcCC
Q 004210 584 KNALESYVYEMRDKISNIYRSFATESEREGI----SRNLRDTEEWLYEDGD 630 (768)
Q Consensus 584 kN~LEs~iy~~r~~l~~~~~~~~t~~e~~~l----~~~l~~~~~WL~~~g~ 630 (768)
.+.||.+++++-+=-...|..++|.+|-.++ .+.++.+..||...|-
T Consensus 26 ~~~L~~~l~~vsdP~s~~Ygk~Lt~~e~~~~~~p~~~~v~~V~~wL~~~G~ 76 (143)
T PF09286_consen 26 LDALEQYLAEVSDPGSPNYGKYLTPEEFAALFAPSPEDVAAVKSWLKSHGL 76 (143)
T ss_dssp HHHHHHHHHHHHTTTSTTTT----HHHHHHHHS--HHHHHHHHHHHHHCT-
T ss_pred HHHHHHHHHhCcCCCCcccccCCCHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 3578888888766444568899999888775 3568899999998873
No 269
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=27.09 E-value=7.2e+02 Score=25.74 Aligned_cols=20 Identities=25% Similarity=0.624 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHH-HHHHhhc
Q 004210 609 SEREGISRNLRDT-EEWLYED 628 (768)
Q Consensus 609 ~e~~~l~~~l~~~-~~WL~~~ 628 (768)
.|.++|..+|..+ +||++++
T Consensus 89 tEI~eLksQL~RMrEDWIEEE 109 (305)
T PF15290_consen 89 TEIDELKSQLARMREDWIEEE 109 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444443 5677764
No 270
>PRK13324 pantothenate kinase; Reviewed
Probab=27.00 E-value=58 Score=33.59 Aligned_cols=20 Identities=20% Similarity=0.353 Sum_probs=17.6
Q ss_pred EEEEEcCccceEEEEEEcCC
Q 004210 3 VVGFDIGNENCVIAAVKQGG 22 (768)
Q Consensus 3 viGID~Gtt~s~va~~~~~~ 22 (768)
++.||+|+|+++.++++.++
T Consensus 2 iL~iDiGNT~ik~gl~~~~~ 21 (258)
T PRK13324 2 LLVMDMGNSHIHIGVFDGDR 21 (258)
T ss_pred EEEEEeCCCceEEEEEECCE
Confidence 78999999999999988544
No 271
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=26.91 E-value=35 Score=38.73 Aligned_cols=19 Identities=26% Similarity=0.543 Sum_probs=16.7
Q ss_pred EEEEcCccceEEEEEEcCC
Q 004210 4 VGFDIGNENCVIAAVKQGG 22 (768)
Q Consensus 4 iGID~Gtt~s~va~~~~~~ 22 (768)
||||+||+++++++++..+
T Consensus 1 lgIDiGtt~ik~~l~d~~g 19 (481)
T TIGR01312 1 LGIDLGTSGVKALLVDEQG 19 (481)
T ss_pred CceeecCcceEEEEECCCC
Confidence 6999999999999998544
No 272
>PRK13320 pantothenate kinase; Reviewed
Probab=26.72 E-value=61 Score=33.16 Aligned_cols=21 Identities=24% Similarity=0.289 Sum_probs=18.5
Q ss_pred eEEEEEcCccceEEEEEEcCC
Q 004210 2 SVVGFDIGNENCVIAAVKQGG 22 (768)
Q Consensus 2 ~viGID~Gtt~s~va~~~~~~ 22 (768)
.++.||+|+|+++.++++.+.
T Consensus 3 M~L~iDiGNT~ik~~~~~~~~ 23 (244)
T PRK13320 3 MNLVIDIGNTTTKLAVFEGDE 23 (244)
T ss_pred eEEEEEeCCCcEEEEEEECCE
Confidence 479999999999999988654
No 273
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=26.69 E-value=35 Score=37.93 Aligned_cols=17 Identities=35% Similarity=0.526 Sum_probs=14.6
Q ss_pred EEEEEEeCCceEEEEEE
Q 004210 196 YVVFVDIGHCDTQVCVA 212 (768)
Q Consensus 196 ~vlv~D~GggT~dvsv~ 212 (768)
.++++|+||-|||+--+
T Consensus 250 ~ll~VDIGGATTDvhSv 266 (463)
T TIGR01319 250 DFILIDIGGATTDVHSA 266 (463)
T ss_pred CEEEEEcCccccchhhc
Confidence 49999999999997554
No 274
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=26.59 E-value=52 Score=37.23 Aligned_cols=17 Identities=24% Similarity=0.511 Sum_probs=16.1
Q ss_pred EEEEEcCccceEEEEEE
Q 004210 3 VVGFDIGNENCVIAAVK 19 (768)
Q Consensus 3 viGID~Gtt~s~va~~~ 19 (768)
++|||.|||.+++++++
T Consensus 8 ~~gIDvGTtSaR~~v~~ 24 (516)
T KOG2517|consen 8 VLGIDVGTTSARALVFN 24 (516)
T ss_pred EEEEEcCCCceEEEEEe
Confidence 78999999999999987
No 275
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=26.43 E-value=8.1e+02 Score=29.27 Aligned_cols=43 Identities=19% Similarity=0.170 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhcCC-CCCCCcccHHHHHHHH
Q 004210 688 VRDAVIDECSKAEEWLREKVTQQDSLP-KDADPILWSTEIKRKS 730 (768)
Q Consensus 688 e~~~v~~~~~~~~~Wl~~~~~~q~~~~-~~~dP~~~~~di~~k~ 730 (768)
=+..|..++++...++-+..+.--+.| .|.-|.|+.+.|-++.
T Consensus 131 vlg~l~~EIe~~~~~vfemeE~R~~Sp~~~~lp~~~Le~Ive~~ 174 (683)
T PF08580_consen 131 VLGDLDNEIEECIRLVFEMEEKRHSSPVRHGLPIFELETIVEEM 174 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCcccCCCcccHHHHHHhc
Confidence 355666667777777777666555555 5667777777776655
No 276
>PTZ00432 falcilysin; Provisional
Probab=26.31 E-value=6.8e+02 Score=31.96 Aligned_cols=46 Identities=17% Similarity=0.203 Sum_probs=27.6
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccHHHHHHHH
Q 004210 682 HSLPSKVRDAVIDECSKAEEWLREKVTQQDSLPKDADPILWSTEIKRKS 730 (768)
Q Consensus 682 ~~~~~ee~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~ 730 (768)
.++++++++++.....+.+.|=+.- ...-....=|.++.+||..+.
T Consensus 596 ~~Ls~ee~~~i~~~~~~l~~~q~~~---~~~e~l~~lP~l~~~DI~~~~ 641 (1119)
T PTZ00432 596 SHLTKEQVDEMEKAYEKFKKEREAD---DDPEHLDSFPILSLSDLNKET 641 (1119)
T ss_pred HhCCHHHHHHHHHHHHHHHHHhcCC---CChhHHhhcCCCcHHHcCCcc
Confidence 4579999999988877776653220 000002234678888877544
No 277
>KOG0517 consensus Beta-spectrin [Cytoskeleton]
Probab=26.30 E-value=1.7e+03 Score=29.87 Aligned_cols=102 Identities=17% Similarity=0.247 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhc------CCC-----ccHHHHHHHHHHHHHhHhHHHHhhHhHHH--------HHHHHHHH
Q 004210 608 ESEREGISRNLRDTEEWLYED------GDD-----ESENVYAERLEDLKKLVDPIEGRYKDEEA--------RAQATGAL 668 (768)
Q Consensus 608 ~~e~~~l~~~l~~~~~WL~~~------g~~-----a~~~~~~~kl~~L~~~~~pi~~R~~e~~~--------rp~a~~~l 668 (768)
....+.+.-.+.++..|+.+- -.. ++.-.++.+|+-|..-..||..|....+. .|+-...+
T Consensus 949 a~~V~~f~~eC~et~~wi~dK~~~~e~t~~~~~Dl~gv~alqrrL~~lErdl~aie~kv~~L~~ea~~v~~~~Paea~~i 1028 (2473)
T KOG0517|consen 949 ALRVETFHLECEETRVWIRDKTRVLESTDRLGNDLAGVMALQRRLQGLERDLAAIEAKVAALEKEANKVEEEHPAEAQAI 1028 (2473)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccCcchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcChHHHHHH
Confidence 334566777788888898763 111 33347788888888888888888766543 34444455
Q ss_pred HHHHHHHHHHHHh---------CCCC-hhhHHHHHHHHHHHHHHHHHHHHh
Q 004210 669 LKCAMDYRKVVEA---------HSLP-SKVRDAVIDECSKAEEWLREKVTQ 709 (768)
Q Consensus 669 ~~~l~~~~~~~~~---------~~~~-~ee~~~v~~~~~~~~~Wl~~~~~~ 709 (768)
+..+..+.....+ ..+. .-.++.+...++.+..|+......
T Consensus 1029 ~~r~~el~~~w~~l~~~~~~~~~~l~ea~~lQ~Fl~dld~f~~Wl~~tq~~ 1079 (2473)
T KOG0517|consen 1029 NARIAELQALWEQLQQRLQEREERLEEAGGLQRFLRDLDDFQAWLESTQTQ 1079 (2473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555544443311 0122 234778888999999999765443
No 278
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=26.16 E-value=1.5e+03 Score=29.18 Aligned_cols=53 Identities=21% Similarity=0.319 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhc----CCC-ccHHHHHHHHHHHHHhHhHHHHhhHhHHH
Q 004210 608 ESEREGISRNLRDTEEWLYED----GDD-ESENVYAERLEDLKKLVDPIEGRYKDEEA 660 (768)
Q Consensus 608 ~~e~~~l~~~l~~~~~WL~~~----g~~-a~~~~~~~kl~~L~~~~~pi~~R~~e~~~ 660 (768)
.+.+..+...+.+++.|+..+ |-| .....|++++++|.+...-|..+..+...
T Consensus 742 ~~~~~~~~~~~~~le~~~~~eL~~~GvD~~~I~~l~~~i~~L~~~l~~ie~~r~~V~e 799 (1201)
T PF12128_consen 742 AAAKQEAKEQLKELEQQYNQELAGKGVDPERIQQLKQEIEQLEKELKRIEERRAEVIE 799 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 345667778888888998763 444 36677788888887777766655444333
No 279
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=26.15 E-value=33 Score=38.69 Aligned_cols=18 Identities=17% Similarity=0.257 Sum_probs=16.0
Q ss_pred EEEEcCccceEEEEEEcC
Q 004210 4 VGFDIGNENCVIAAVKQG 21 (768)
Q Consensus 4 iGID~Gtt~s~va~~~~~ 21 (768)
+|||+|||++++++++..
T Consensus 1 ~aiD~Gtt~~k~~l~~~~ 18 (454)
T TIGR02627 1 VAVDLGASSGRVMLASYE 18 (454)
T ss_pred CcEeccCCchheEEEEEc
Confidence 589999999999998754
No 280
>PF01548 DEDD_Tnp_IS110: Transposase; InterPro: IPR002525 Transposase proteins are necessary for efficient DNA transposition. This entry represents the N-terminal region of the pilin gene inverting protein (PIVML) and members of the IS111A/IS1328/IS1533 family of transposases [, ]. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=25.97 E-value=89 Score=28.64 Aligned_cols=20 Identities=20% Similarity=0.554 Sum_probs=18.1
Q ss_pred EEEEEcCccceEEEEEEcCC
Q 004210 3 VVGFDIGNENCVIAAVKQGG 22 (768)
Q Consensus 3 viGID~Gtt~s~va~~~~~~ 22 (768)
+||||+|-.+..+++..+++
T Consensus 1 ~vGiDv~k~~~~v~v~~~~~ 20 (144)
T PF01548_consen 1 FVGIDVSKDTHDVCVIDPNG 20 (144)
T ss_pred eEEEEcccCeEEEEEEcCCC
Confidence 69999999999999988776
No 281
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=25.82 E-value=9.5e+02 Score=26.71 Aligned_cols=32 Identities=13% Similarity=0.319 Sum_probs=21.4
Q ss_pred ccHHHHHHHHHHHHHhHhHHHHhhHhHHHHHH
Q 004210 632 ESENVYAERLEDLKKLVDPIEGRYKDEEARAQ 663 (768)
Q Consensus 632 a~~~~~~~kl~~L~~~~~pi~~R~~e~~~rp~ 663 (768)
+.+...+.|+.+|+...+.+..+.++..+...
T Consensus 375 ~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~ 406 (493)
T KOG0804|consen 375 AEKKIVERKLQQLQTKLKKCQKELKEEREENK 406 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677888888877777777666554433
No 282
>PRK07515 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=25.38 E-value=68 Score=35.09 Aligned_cols=47 Identities=11% Similarity=0.090 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCcCEEEEecCCCChHHHHHHHHhhcC
Q 004210 309 SSLLERMRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFN 357 (768)
Q Consensus 309 ~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~fg 357 (768)
+.....+...|+++|+++|++++||+.+++.+++.++-- ..+++.||
T Consensus 267 ~~~~~~~~~~i~~~L~~~gl~~~dId~~~~Hq~~~~~~d--~~~~~llg 313 (372)
T PRK07515 267 KEVCPMVAEHIVEHLAENGLTPADVKRFWLHQANINMNQ--LIGKKVLG 313 (372)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCCEEEECCCCHHHHH--HHHHHhcc
Confidence 455667778899999999999999999999999987542 22334455
No 283
>PF01150 GDA1_CD39: GDA1/CD39 (nucleoside phosphatase) family; InterPro: IPR000407 A number of nucleoside diphosphate and triphosphate hydrolases as well as some yet uncharacterised proteins have been found to belong to the same family [, ]. The uncharacterised proteins all seem to be membrane-bound. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0016787 hydrolase activity; PDB: 3AAP_A 3AAR_A 3AAQ_A 3AGR_A 4A5B_B 4A57_D 4A59_A 4A5A_B 3CJA_A 3CJ1_A ....
Probab=25.03 E-value=76 Score=35.56 Aligned_cols=21 Identities=24% Similarity=0.314 Sum_probs=16.2
Q ss_pred CcEEEEEEeCCceEEEEEEEe
Q 004210 194 PTYVVFVDIGHCDTQVCVASY 214 (768)
Q Consensus 194 ~~~vlv~D~GggT~dvsv~~~ 214 (768)
...+.++||||+++.++..--
T Consensus 163 ~~t~g~lDlGGaStQIaf~~~ 183 (434)
T PF01150_consen 163 SNTVGALDLGGASTQIAFEPS 183 (434)
T ss_dssp SS-EEEEEE-SSEEEEEEEET
T ss_pred CceEEEEecCCcceeeeeccC
Confidence 578999999999999996544
No 284
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=24.95 E-value=6.4e+02 Score=29.30 Aligned_cols=68 Identities=13% Similarity=0.174 Sum_probs=37.6
Q ss_pred HHHhhHHHHHHHHHHHHhhHhhccCCHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHhHhHHHHh
Q 004210 582 DRKNALESYVYEMRDKISNIYRSFATESEREGISRNLRDTEEWLYEDGDDESENVYAERLEDLKKLVDPIEGR 654 (768)
Q Consensus 582 ~akN~LEs~iy~~r~~l~~~~~~~~t~~e~~~l~~~l~~~~~WL~~~g~~a~~~~~~~kl~~L~~~~~pi~~R 654 (768)
..-++++.-+-.++......+.+.-..++-+++.+.++++.. +.--+..++.+..++++.+..-+..-
T Consensus 164 ~~~~~~~~~~k~~~~~w~~~~~~Lp~~~~~~~yk~~v~~i~~-----~~ik~p~~i~~~~~e~d~lk~e~~~~ 231 (555)
T TIGR03545 164 ETAEEIEKSLKAMQQKWKKRKKDLPNKQDLEEYKKRLEAIKK-----KDIKNPLELQKIKEEFDKLKKEGKAD 231 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHh-----ccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444455554434344456677777777777766 22334556666666666666555443
No 285
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=24.80 E-value=1.4e+03 Score=28.47 Aligned_cols=159 Identities=17% Similarity=0.174 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHH--------HHHHHHHHhhHhhccCCHHHHHHHHHHHHHHHHHHhhc
Q 004210 557 KTELSEAVEKEHQLVQQDLKMERTKDRKNALESY--------VYEMRDKISNIYRSFATESEREGISRNLRDTEEWLYED 628 (768)
Q Consensus 557 ~~e~~~~~~~~~~~~~~D~~~~~~~~akN~LEs~--------iy~~r~~l~~~~~~~~t~~e~~~l~~~l~~~~~WL~~~ 628 (768)
.+++..+.+++.++...=.....+++..+.|+.. +|.....|.. -.++-..+.+.+.++.+=+...
T Consensus 234 ~e~i~~l~k~i~e~~e~~~~~~~~e~~~~~l~~Lk~k~~W~~V~~~~~ql~~------~~~~i~~~qek~~~l~~ki~~~ 307 (1074)
T KOG0250|consen 234 EEEIKNLKKKIKEEEEKLDNLEQLEDLKENLEQLKAKMAWAWVNEVERQLNN------QEEEIKKKQEKVDTLQEKIEEK 307 (1074)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
Q ss_pred CCCccHHHHHHHHHHHHHhHhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHhCC-------------CChhhHHHHHHH
Q 004210 629 GDDESENVYAERLEDLKKLVDPIEGRYKDEEARAQATGALLKCAMDYRKVVEAHS-------------LPSKVRDAVIDE 695 (768)
Q Consensus 629 g~~a~~~~~~~kl~~L~~~~~pi~~R~~e~~~rp~a~~~l~~~l~~~~~~~~~~~-------------~~~ee~~~v~~~ 695 (768)
....+.+..++.++++... .+..|...+..-++.+++.+..++..+ .. =-..++..+...
T Consensus 308 --~~k~~~~r~k~teiea~i~---~~~~e~~~~d~Ei~~~r~~~~~~~re~--~~~~~~~~~~~n~i~~~k~~~d~l~k~ 380 (1074)
T KOG0250|consen 308 --QGKIEEARQKLTEIEAKIG---ELKDEVDAQDEEIEEARKDLDDLRREV--NDLKEEIREIENSIRKLKKEVDRLEKQ 380 (1074)
T ss_pred --HHHHHHHhhhhhHHHHHHH---HHHHhhhhhhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCCcccHHHHHHHHHHHHHHhhhh
Q 004210 696 CSKAEEWLREKVTQQDSLPKDADPILWSTEIKRKSEALDLTCKCI 740 (768)
Q Consensus 696 ~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~~~i 740 (768)
+...+.-++..+..|.. +++.|.+.|...+-.+
T Consensus 381 I~~~~~~~~~~~~~~~~------------e~e~k~~~L~~evek~ 413 (1074)
T KOG0250|consen 381 IADLEKQTNNELGSELE------------ERENKLEQLKKEVEKL 413 (1074)
T ss_pred HHHHHHHHHhhhhhhHH------------HHHHHHHHHHHHHHHH
No 286
>PRK00180 acetate kinase A/propionate kinase 2; Reviewed
Probab=24.56 E-value=1.5e+02 Score=32.61 Aligned_cols=47 Identities=4% Similarity=-0.022 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCcCEEEEecCCC-ChHHHHHHHHhhcC
Q 004210 308 SSSLLERMRIPCQKALAGSGLNVEKIHSVELVGSGS-RIPAISRMLNSLFN 357 (768)
Q Consensus 308 ~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~s-rip~v~~~l~~~fg 357 (768)
++-++.++.+.|-...... ...+|.|+++||.+ ..+.|++.|.+.++
T Consensus 302 ~d~f~yri~k~Iga~~a~L---~g~vDaiVfTGGIgE~s~~lr~~I~~~l~ 349 (402)
T PRK00180 302 LDVFVYRLAKYIGSYAAAL---NGRLDAIVFTAGIGENSALVREKVLEGLE 349 (402)
T ss_pred HHHHHHHHHHHHHHHHHHh---cCCCCEEEEcCccccCCHHHHHHHHhhhh
Confidence 3445555555555554443 12699999999999 99999999998774
No 287
>PRK11166 chemotaxis regulator CheZ; Provisional
Probab=24.13 E-value=6.8e+02 Score=24.99 Aligned_cols=63 Identities=19% Similarity=0.139 Sum_probs=32.2
Q ss_pred HHHhHhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 004210 644 LKKLVDPIEGRYKDEEARAQATGALLKCAMDYRKVVEAHSLPSKVRDAVIDECSKAEEWLREKVTQQDSLPKD 716 (768)
Q Consensus 644 L~~~~~pi~~R~~e~~~rp~a~~~l~~~l~~~~~~~~~~~~~~ee~~~v~~~~~~~~~Wl~~~~~~q~~~~~~ 716 (768)
|..-...+..|+...-.+|-....++......+.|+ ..+.....++...|.+.+.+|+=.+++
T Consensus 83 l~~~a~~L~~~w~~l~~~~~~~~e~~~L~~~~~~fL----------~~v~~~t~~~~~~L~eI~mAqdFQDLT 145 (214)
T PRK11166 83 LEKEAKALDARWDEWFANPIELADARELVTDTRAFL----------ADVPEHTSFTNAQLLEIMMAQDFQDLT 145 (214)
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH----------HHhHhhHHHHHHHHHHHHHHccchHhH
Confidence 333344444555555555555555555555555555 333344445555555555555544433
No 288
>KOG3133 consensus 40 kDa farnesylated protein associated with peroxisomes [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.89 E-value=5.8e+02 Score=26.16 Aligned_cols=62 Identities=21% Similarity=0.284 Sum_probs=41.2
Q ss_pred hhHHHHHHHHHHHHhhHhhccCCHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHhHhHHHH
Q 004210 585 NALESYVYEMRDKISNIYRSFATESEREGISRNLRDTEEWLYEDGDDESENVYAERLEDLKKLVDPIEG 653 (768)
Q Consensus 585 N~LEs~iy~~r~~l~~~~~~~~t~~e~~~l~~~l~~~~~WL~~~g~~a~~~~~~~kl~~L~~~~~pi~~ 653 (768)
+.||.++-.|-+.|-.. ++ =.+-+++....+=.||.++++...+ +..+|++.-.+++..|..
T Consensus 142 g~le~~m~~iMqqllSK--EI----LyeplKEl~~~YPkwLeen~e~l~~-E~~erYqkQ~~~i~~i~~ 203 (267)
T KOG3133|consen 142 GDLEPIMESIMQQLLSK--EI----LYEPLKELGANYPKWLEENGESLSK-EDKERYQKQFELIKEIES 203 (267)
T ss_pred ccHHHHHHHHHHHHHHH--HH----hhhhHHHHHHHhhHHHHhcccccCH-HHHHHHHHHHHHHHHHHH
Confidence 66777777766666421 01 1366788888999999999877744 445566666666666655
No 289
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=23.56 E-value=8.7e+02 Score=26.04 Aligned_cols=75 Identities=20% Similarity=0.267 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHhHhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHHHHHHHhhhcC
Q 004210 634 ENVYAERLEDLKKLVDPIEGRYKDEEARAQATGALLKCAMDYRKVVEAHSLPSKVRDAVIDECSKAEEWLREKVTQQDSL 713 (768)
Q Consensus 634 ~~~~~~kl~~L~~~~~pi~~R~~e~~~rp~a~~~l~~~l~~~~~~~~~~~~~~ee~~~v~~~~~~~~~Wl~~~~~~q~~~ 713 (768)
-..|.+|++++.++.+....-+.-...| +..+..+|.+.+.-. .....+.++++...+.+.+.=+.+.. .-+
T Consensus 20 hr~Y~qKleel~~lQ~~C~ssI~~Qkkr---Lk~L~~sLk~~~~~~--~~e~~~~i~~L~~~Ik~r~~~l~DmE---a~L 91 (330)
T PF07851_consen 20 HRSYKQKLEELSKLQDKCSSSISHQKKR---LKELKKSLKRCKKSL--SAEERELIEKLEEDIKERRCQLFDME---AFL 91 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhccCC--ChhHHHHHHHHHHHHHHHHhhHHHHH---hhC
Confidence 3567788888877766655544444444 233333443332222 11233445666666666555555544 445
Q ss_pred CCC
Q 004210 714 PKD 716 (768)
Q Consensus 714 ~~~ 716 (768)
|+.
T Consensus 92 Pkk 94 (330)
T PF07851_consen 92 PKK 94 (330)
T ss_pred CCC
Confidence 555
No 290
>PLN02914 hexokinase
Probab=23.38 E-value=2e+02 Score=32.72 Aligned_cols=24 Identities=13% Similarity=0.134 Sum_probs=21.6
Q ss_pred CCcEEEEEEeCCceEEEEEEEeeC
Q 004210 193 GPTYVVFVDIGHCDTQVCVASYEN 216 (768)
Q Consensus 193 ~~~~vlv~D~GggT~dvsv~~~~~ 216 (768)
+...+|.+|+||.++-|..|++.+
T Consensus 93 E~G~fLAlDlGGTNfRV~~V~L~g 116 (490)
T PLN02914 93 EKGLFYALDLGGTNFRVLRVQLGG 116 (490)
T ss_pred eeeEEEEEecCCceEEEEEEEecC
Confidence 456799999999999999999986
No 291
>smart00657 RPOL4c DNA-directed RNA-polymerase II subunit.
Probab=23.27 E-value=5e+02 Score=23.09 Aligned_cols=36 Identities=8% Similarity=0.104 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHH
Q 004210 659 EARAQATGALLKCAMDYRKVVEAHSLPSKVRDAVIDECSKA 699 (768)
Q Consensus 659 ~~rp~a~~~l~~~l~~~~~~~~~~~~~~ee~~~v~~~~~~~ 699 (768)
.-+|..+..++..|...... +++++++++.+.+...
T Consensus 79 Nl~P~s~~E~~~lI~sl~~r-----~~ee~l~~iL~~i~~~ 114 (118)
T smart00657 79 NLRPETAEEAQLLIPSLEER-----IDEEELEELLDDLSSL 114 (118)
T ss_pred CCCCCCHHHHHHHhhhhhcc-----CCHHHHHHHHHHHHHh
Confidence 45666666666666554322 5788888888877654
No 292
>KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=23.07 E-value=2.2e+02 Score=29.75 Aligned_cols=50 Identities=18% Similarity=0.085 Sum_probs=31.8
Q ss_pred CEEEEecCCCC-hHHHHHHHHhhc----CCCCCCcCChhhHHHhHHHHHhhHhcC
Q 004210 334 HSVELVGSGSR-IPAISRMLNSLF----NREPGRTINASECVARGCALQCAMLSP 383 (768)
Q Consensus 334 ~~V~LvGG~sr-ip~v~~~l~~~f----g~~v~~~~n~~eava~Gaa~~a~~ls~ 383 (768)
=.|++|||.-. ...+++-....+ +.+-.....|.++-|.|||+.||.+-+
T Consensus 265 l~Iv~vG~V~~Sw~~l~~Gfl~sls~~~~f~~~~l~~~k~ssAvgAA~laa~~~~ 319 (336)
T KOG1794|consen 265 LPIVCVGGVFDSWDLLQEGFLDSLSDTRGFERVELYRPKESSAVGAAILAASLDN 319 (336)
T ss_pred ceEEEEcchhhHHHHHHHHHHHHhhcccCccceEEEeecccchHHHHHHhhhhcc
Confidence 36999999644 334443332222 122244567888899999999997755
No 293
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=22.96 E-value=6.6e+02 Score=23.88 Aligned_cols=35 Identities=17% Similarity=0.079 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhhhcCCCCCCCcccHHHHHHHHHHHHHHh
Q 004210 699 AEEWLREKVTQQDSLPKDADPILWSTEIKRKSEALDLTC 737 (768)
Q Consensus 699 ~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~ 737 (768)
...|+.+........+... +..++...+..++...
T Consensus 118 l~~wl~~~e~~l~~~~~~~----~~~~~~~~l~~~~~~~ 152 (213)
T cd00176 118 LEQWLEEKEAALASEDLGK----DLESVEELLKKHKELE 152 (213)
T ss_pred HHHHHHHHHHHhcCcccCC----CHHHHHHHHHHHHHHH
Confidence 5666666555443332221 4444444444444433
No 294
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=22.78 E-value=3.3e+02 Score=28.67 Aligned_cols=52 Identities=13% Similarity=0.072 Sum_probs=34.3
Q ss_pred CCcEEEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCCchhhHHHHHHHHHH
Q 004210 193 GPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEVLSSYFA 244 (768)
Q Consensus 193 ~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~d~~l~~~l~ 244 (768)
...+++-+|+|+.++.++++...+..+..........-....+-..|.+.+.
T Consensus 4 ~~~~~lgidIggt~i~~~l~d~~g~~l~~~~~~~~~~~~~~~~~~~i~~~i~ 55 (314)
T COG1940 4 EAMTVLGIDIGGTKIKVALVDLDGEILLRERIPTPTPDPEEAILEAILALVA 55 (314)
T ss_pred cCcEEEEEEecCCEEEEEEECCCCcEEEEEEEecCCCCchhHHHHHHHHHHH
Confidence 4578999999999999999998776544444443333333455555555444
No 295
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=22.66 E-value=8e+02 Score=28.68 Aligned_cols=43 Identities=21% Similarity=0.268 Sum_probs=36.2
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccHHHHHHHHHHHHHHhhhhc
Q 004210 683 SLPSKVRDAVIDECSKAEEWLREKVTQQDSLPKDADPILWSTEIKRKSEALDLTCKCIM 741 (768)
Q Consensus 683 ~~~~ee~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~~~i~ 741 (768)
.+++++++++...+.+.+.||.. . ..+++.+.+.|+...+++.
T Consensus 531 ~~~~~~~~~~~~~~~~~~~~l~~--~--------------~~~~~~~~~~l~~~~~~~~ 573 (579)
T COG0443 531 KVSEEEKEKIEEAITDLEEALEG--E--------------KEEIKAKIEELQEVTQKLA 573 (579)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhc--c--------------HHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999999976 0 6888999999888877765
No 296
>PLN00415 3-ketoacyl-CoA synthase
Probab=22.57 E-value=1.9e+02 Score=32.50 Aligned_cols=45 Identities=11% Similarity=0.102 Sum_probs=35.8
Q ss_pred HHHHHHHHHHhcCCCCCCcCEEEEecCCC-ChHHHHHHHHhhcCCC
Q 004210 315 MRIPCQKALAGSGLNVEKIHSVELVGSGS-RIPAISRMLNSLFNRE 359 (768)
Q Consensus 315 i~~~i~~~l~~~~~~~~~i~~V~LvGG~s-rip~v~~~l~~~fg~~ 359 (768)
+...++++|+++|+++++||.|+..+.+- ..|.+-.+|...+|.+
T Consensus 138 i~~A~~~aL~~aGi~p~dID~LIvs~T~~~~~Pslaa~l~~~LGLr 183 (466)
T PLN00415 138 IFGALNSLFKKTGIEPREVGIFIVNCSLFNPNPSLSSMIVNRYKLK 183 (466)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEEECcCCCCCchHHHHHHHHhCCC
Confidence 44567788999999999999988654332 5899999999999843
No 297
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=22.21 E-value=1.1e+03 Score=26.16 Aligned_cols=44 Identities=11% Similarity=0.042 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHhHhHHHHhh
Q 004210 612 EGISRNLRDTEEWLYEDGDDESENVYAERLEDLKKLVDPIEGRY 655 (768)
Q Consensus 612 ~~l~~~l~~~~~WL~~~g~~a~~~~~~~kl~~L~~~~~pi~~R~ 655 (768)
.+=...|.+...|+|--|.+.+.......-+-+...-..|..++
T Consensus 111 r~qr~~La~~L~A~~r~g~~p~~~ll~~~eda~~~~R~ai~~~~ 154 (420)
T COG4942 111 REQRRRLAEQLAALQRSGRNPPPALLVSPEDAQRSVRLAIYYGA 154 (420)
T ss_pred HHHHHHHHHHHHHHHhccCCCCchhhcChhhhhHHHHHHHHHHH
Confidence 44556788888999987766655444333333333333344443
No 298
>PRK12879 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=22.13 E-value=1.8e+02 Score=30.90 Aligned_cols=46 Identities=17% Similarity=0.104 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCcCEEEEecCCCChHHHHHHHHhhcCC
Q 004210 310 SLLERMRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNR 358 (768)
Q Consensus 310 ~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~fg~ 358 (768)
..+..+...++++|+++|+++++|+.+++..++ +.+.+.+.+.+|.
T Consensus 222 ~~~~~~~~~i~~~L~~~g~~~~did~~~~h~~~---~~~~~~~~~~lg~ 267 (325)
T PRK12879 222 WAVRTMPKGARQVLEKAGLTKDDIDWVIPHQAN---LRIIESLCEKLGI 267 (325)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHCCEEEECCCC---HHHHHHHHHHcCC
Confidence 345667788999999999999999999999887 4445678888874
No 299
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=22.06 E-value=66 Score=35.88 Aligned_cols=16 Identities=25% Similarity=0.235 Sum_probs=13.8
Q ss_pred EEcCccceEEEEEEcC
Q 004210 6 FDIGNENCVIAAVKQG 21 (768)
Q Consensus 6 ID~Gtt~s~va~~~~~ 21 (768)
+|||||||+++.++..
T Consensus 1 ~DiGST~Tk~~a~~~~ 16 (463)
T TIGR01319 1 LDFGSTWTKAAAFDIE 16 (463)
T ss_pred CCccccceEEEEEecC
Confidence 6999999999999643
No 300
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=22.00 E-value=2e+02 Score=30.88 Aligned_cols=45 Identities=22% Similarity=0.251 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCcCEEEEecCCCChHHHH
Q 004210 305 EKLSSSLLERMRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAIS 349 (768)
Q Consensus 305 e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~ 349 (768)
|...+..++.+..+|+++|+++|++.+|||.|-.+=|-+-++.+.
T Consensus 44 e~Asr~H~e~i~~li~~al~eA~~~~~dID~IA~T~gPGL~gaL~ 88 (342)
T COG0533 44 ELASRHHVENIPPLIEEALAEAGVSLEDIDAIAVTAGPGLGGALL 88 (342)
T ss_pred cHHHHHHHHHHHHHHHHHHHHcCCCcccCCEEEEecCCCchhHHH
Confidence 345667889999999999999999999999999999988888765
No 301
>PF11458 Mistic: Membrane-integrating protein Mistic; InterPro: IPR021078 Mistic is an integral membrane protein that folds autonomously into the membrane []. It is conserved in the Bacilli bacteria. The protein forms a helical bundle with a polar lipid-facing surface. Mistic can be used for high-level production of other membrane proteins in their native conformations [].
Probab=21.88 E-value=2.2e+02 Score=22.96 Aligned_cols=67 Identities=16% Similarity=0.092 Sum_probs=33.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHhHhHHHHhhHhHHHHHHHHHHHHHHH
Q 004210 606 ATESEREGISRNLRDTEEWLYEDGDDESENVYAERLEDLKKLVDPIEGRYKDEEARAQATGALLKCA 672 (768)
Q Consensus 606 ~t~~e~~~l~~~l~~~~~WL~~~g~~a~~~~~~~kl~~L~~~~~pi~~R~~e~~~rp~a~~~l~~~l 672 (768)
++.+||+.+...++...+-|+-=-.-...++-.+.|-+|..-...+..|+.+.-...+.-+.++..|
T Consensus 3 Vt~~EkeQLS~AID~mnEGLD~fI~lYNeSe~DepLiql~detael~~~A~~~yG~e~~n~klN~iI 69 (84)
T PF11458_consen 3 VTDQEKEQLSTAIDRMNEGLDTFIQLYNESEKDEPLIQLEDETAELIRQAREKYGQEKLNEKLNAII 69 (84)
T ss_pred CchHHHHHHHHHHHHHHhhHHHHHHHHcccccccchhhcchhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 5778888888888887776532100000011123444455444455555555433333333343333
No 302
>PF13941 MutL: MutL protein
Probab=21.86 E-value=2.2e+02 Score=32.09 Aligned_cols=47 Identities=23% Similarity=0.282 Sum_probs=33.4
Q ss_pred EEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCCchh-hHHHHHHHHH
Q 004210 197 VVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGR-DFDEVLSSYF 243 (768)
Q Consensus 197 vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~-~~d~~l~~~l 243 (768)
+|++|||+.+|-++++....+..++++.+....--.. |+...+.+-+
T Consensus 2 ~L~~DiGST~Tk~~l~d~~~~~~~~ig~a~apTTv~~~Dv~~G~~~A~ 49 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLFDLVDGEPRLIGQAEAPTTVEPGDVTIGLNNAL 49 (457)
T ss_pred EEEEEeCCcceEEeEEeccCCccEEEEEEeCCCCcCcccHHHHHHHHH
Confidence 7999999999999999976777778877643332233 6665555444
No 303
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.24 E-value=1.5e+03 Score=27.25 Aligned_cols=16 Identities=19% Similarity=0.542 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHh
Q 004210 611 REGISRNLRDTEEWLY 626 (768)
Q Consensus 611 ~~~l~~~l~~~~~WL~ 626 (768)
|.++.+.-++-.+|+-
T Consensus 418 ~qem~~Qk~reqe~iv 433 (1118)
T KOG1029|consen 418 RQEMLNQKNREQEWIV 433 (1118)
T ss_pred HHHHHhhhhHHHHHHH
Confidence 4555555566666653
No 304
>PF08429 PLU-1: PLU-1-like protein; InterPro: IPR013637 This domain is found in the central region of lysine-specific demethylases, which are nuclear proteins that may have a role in DNA-binding and transcription, and are associated with malignant cancer phenotypes []. The domain is also found in various other Jumonji/ARID domain-containing proteins (see IPR013129 from INTERPRO, IPR001606 from INTERPRO). ; GO: 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process
Probab=21.17 E-value=1e+03 Score=25.34 Aligned_cols=47 Identities=17% Similarity=0.251 Sum_probs=35.2
Q ss_pred CCCHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHHHHHHHhh
Q 004210 554 GMTKTELSEAVEKEHQLVQQDLKMERTKDRKNALESYVYEMRDKISN 600 (768)
Q Consensus 554 ~ls~~e~~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~ 600 (768)
.++-+++..+.+....+.-.=-......+-.+.+|+|--+++..|.+
T Consensus 82 ~~~l~~l~~Ll~e~~~L~~~~pEi~~L~~l~~~ve~f~~~a~~~L~~ 128 (335)
T PF08429_consen 82 KLTLEELEALLEEIESLPFDCPEIDQLKELLEEVEEFQSRAQEALSD 128 (335)
T ss_pred cCCHHHHHHHHHHHhcCCeeCchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 57888888888888776666556666777778888888787777743
No 305
>PLN02362 hexokinase
Probab=21.11 E-value=2.6e+02 Score=32.00 Aligned_cols=25 Identities=12% Similarity=0.048 Sum_probs=22.0
Q ss_pred CCcEEEEEEeCCceEEEEEEEeeCC
Q 004210 193 GPTYVVFVDIGHCDTQVCVASYENG 217 (768)
Q Consensus 193 ~~~~vlv~D~GggT~dvsv~~~~~~ 217 (768)
+...+|.+|+||.++-|..+++.++
T Consensus 93 E~G~fLAlDlGGTNfRV~~V~L~g~ 117 (509)
T PLN02362 93 EIGTYYALDLGGTNFRVLRVQLGGQ 117 (509)
T ss_pred cceeEEEEecCCceEEEEEEEecCC
Confidence 4566999999999999999999864
No 306
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=21.08 E-value=1.3e+03 Score=26.72 Aligned_cols=27 Identities=4% Similarity=0.021 Sum_probs=23.2
Q ss_pred CcccHHHHHHHHHHHHHHhhhhc-CCCC
Q 004210 719 PILWSTEIKRKSEALDLTCKCIM-RSNP 745 (768)
Q Consensus 719 P~~~~~di~~k~~~l~~~~~~i~-kpkP 745 (768)
.+++..+|..++..|...|.+.- .|.|
T Consensus 464 Gv~s~~~L~~rf~~v~~~~r~~~l~~~~ 491 (582)
T PF09731_consen 464 GVPSEAQLRNRFERVAPEVRRASLVPPE 491 (582)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 69999999999999999988877 7443
No 307
>PRK12408 glucokinase; Provisional
Probab=21.00 E-value=63 Score=34.84 Aligned_cols=19 Identities=26% Similarity=0.365 Sum_probs=17.2
Q ss_pred EEEEEcCccceEEEEEEcC
Q 004210 3 VVGFDIGNENCVIAAVKQG 21 (768)
Q Consensus 3 viGID~Gtt~s~va~~~~~ 21 (768)
+||||+|.|++++++++.+
T Consensus 18 ~L~~DIGGT~i~~al~d~~ 36 (336)
T PRK12408 18 FVAADVGGTHVRVALVCAS 36 (336)
T ss_pred EEEEEcChhhhheeEEecc
Confidence 7999999999999999753
No 308
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=20.57 E-value=6.2e+02 Score=24.75 Aligned_cols=46 Identities=24% Similarity=0.385 Sum_probs=26.3
Q ss_pred HHHHHHhhHHHHHHHHHHHHhhHhhccCCHHHHHHHHHHHHHHHHHHh
Q 004210 579 RTKDRKNALESYVYEMRDKISNIYRSFATESEREGISRNLRDTEEWLY 626 (768)
Q Consensus 579 ~~~~akN~LEs~iy~~r~~l~~~~~~~~t~~e~~~l~~~l~~~~~WL~ 626 (768)
..+..+.+||.-|-+++.+++.+ +..++++|+.-..+.++..++|.
T Consensus 196 ~le~~k~~Le~~ia~~k~K~e~~--e~r~~E~r~ieEkk~~eei~fLk 241 (259)
T KOG4001|consen 196 VLEDKKKELELKIAQLKKKLETD--EIRSEEEREIEEKKMKEEIEFLK 241 (259)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666666521 23455566666666666666664
No 309
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=20.46 E-value=1.7e+03 Score=27.67 Aligned_cols=35 Identities=14% Similarity=0.218 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCCcccHHHHHHHH
Q 004210 696 CSKAEEWLREKVTQQDSLPKDADPILWSTEIKRKS 730 (768)
Q Consensus 696 ~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~ 730 (768)
+..+..-+.+..+.-.+.+.+++|+....++..+.
T Consensus 341 i~~~~k~i~~~q~el~~~~~~e~~~~~~~ei~~~~ 375 (1072)
T KOG0979|consen 341 IEKAKKMILDAQAELQETEDPENPVEEDQEIMKEV 375 (1072)
T ss_pred HHHHHHHHHHHHhhhhhcCCccccchhHHHHHHHH
Confidence 44444445454555555566666666665555443
Done!