Query 004211
Match_columns 768
No_of_seqs 404 out of 2738
Neff 8.9
Searched_HMMs 46136
Date Thu Mar 28 19:28:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004211.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004211hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0103 Molecular chaperones H 100.0 2E-123 5E-128 996.7 64.6 723 1-744 1-727 (727)
2 KOG0100 Molecular chaperones G 100.0 1E-122 3E-127 926.1 58.6 601 2-657 37-643 (663)
3 KOG0104 Molecular chaperones G 100.0 1E-107 2E-112 875.7 65.1 730 2-741 23-832 (902)
4 PTZ00009 heat shock 70 kDa pro 100.0 1E-102 3E-107 902.3 74.3 602 1-657 4-614 (653)
5 PRK13410 molecular chaperone D 100.0 7E-102 1E-106 891.6 72.4 609 2-673 3-621 (668)
6 PTZ00400 DnaK-type molecular c 100.0 1.9E-99 4E-104 874.7 72.4 586 2-655 42-636 (663)
7 PRK13411 molecular chaperone D 100.0 3.3E-99 7E-104 872.7 74.4 591 2-657 3-601 (653)
8 PRK00290 dnaK molecular chaper 100.0 7.5E-98 2E-102 863.4 75.4 587 1-657 1-597 (627)
9 PLN03184 chloroplast Hsp70; Pr 100.0 6.5E-98 1E-102 862.1 72.2 588 2-655 40-634 (673)
10 PTZ00186 heat shock 70 kDa pre 100.0 9.8E-97 2E-101 844.6 73.6 587 2-654 28-622 (657)
11 CHL00094 dnaK heat shock prote 100.0 1E-96 2E-101 850.9 73.2 590 2-657 3-599 (621)
12 TIGR02350 prok_dnaK chaperone 100.0 3E-96 7E-101 848.0 74.1 584 2-655 1-593 (595)
13 TIGR01991 HscA Fe-S protein as 100.0 1.7E-93 3.7E-98 818.6 74.3 579 3-654 1-582 (599)
14 KOG0101 Molecular chaperones H 100.0 2.4E-95 5E-100 792.1 50.4 601 1-657 7-614 (620)
15 PF00012 HSP70: Hsp70 protein; 100.0 7E-93 1.5E-97 829.2 66.7 594 3-656 1-601 (602)
16 PRK05183 hscA chaperone protei 100.0 7E-92 1.5E-96 806.6 72.8 578 2-655 20-599 (616)
17 PRK01433 hscA chaperone protei 100.0 2.4E-86 5.3E-91 753.3 70.1 551 2-656 20-579 (595)
18 KOG0102 Molecular chaperones m 100.0 1.5E-88 3.3E-93 706.4 44.7 589 2-655 28-625 (640)
19 COG0443 DnaK Molecular chapero 100.0 5.6E-85 1.2E-89 737.5 59.6 569 2-656 6-577 (579)
20 PRK11678 putative chaperone; P 100.0 8.2E-55 1.8E-59 478.5 37.9 337 3-381 2-448 (450)
21 PRK13928 rod shape-determining 100.0 2.4E-38 5.1E-43 341.1 33.5 307 4-381 6-324 (336)
22 PRK13929 rod-share determining 100.0 9.8E-38 2.1E-42 335.1 31.5 305 3-378 6-324 (335)
23 PRK13927 rod shape-determining 100.0 3.7E-35 7.9E-40 316.9 30.4 305 3-380 7-324 (334)
24 TIGR00904 mreB cell shape dete 100.0 8.8E-35 1.9E-39 313.2 31.3 305 4-380 5-327 (333)
25 PRK13930 rod shape-determining 100.0 1.2E-33 2.6E-38 305.5 31.5 308 3-381 10-329 (335)
26 PF06723 MreB_Mbl: MreB/Mbl pr 100.0 1.5E-31 3.4E-36 279.6 24.6 306 3-379 3-320 (326)
27 COG1077 MreB Actin-like ATPase 100.0 5.2E-29 1.1E-33 249.0 27.1 310 2-382 7-333 (342)
28 TIGR02529 EutJ ethanolamine ut 100.0 1.6E-28 3.4E-33 249.8 20.5 200 116-376 39-238 (239)
29 PRK15080 ethanolamine utilizat 100.0 2E-26 4.3E-31 238.6 28.0 202 116-378 66-267 (267)
30 TIGR01174 ftsA cell division p 99.9 9.9E-22 2.1E-26 214.9 27.8 194 152-377 158-371 (371)
31 PRK09472 ftsA cell division pr 99.9 2E-20 4.3E-25 206.9 28.7 195 155-380 169-388 (420)
32 COG0849 ftsA Cell division ATP 99.8 2.6E-16 5.7E-21 169.1 28.1 205 142-381 159-381 (418)
33 cd00012 ACTIN Actin; An ubiqui 99.7 2.3E-15 5E-20 165.1 19.5 301 3-380 1-347 (371)
34 COG4820 EutJ Ethanolamine util 99.7 3.5E-16 7.6E-21 145.1 10.7 196 121-377 76-271 (277)
35 smart00268 ACTIN Actin. ACTIN 99.6 2.9E-14 6.3E-19 156.6 16.0 301 2-380 2-347 (373)
36 PRK13917 plasmid segregation p 99.6 4.4E-13 9.5E-18 144.1 24.5 209 141-383 115-339 (344)
37 PTZ00280 Actin-related protein 99.4 2.5E-11 5.5E-16 134.7 24.0 206 139-357 103-337 (414)
38 PF11104 PilM_2: Type IV pilus 99.3 9.4E-11 2E-15 126.7 19.5 182 152-378 136-339 (340)
39 PF00022 Actin: Actin; InterP 99.3 3.4E-11 7.3E-16 133.5 16.3 309 2-381 5-368 (393)
40 TIGR03739 PRTRC_D PRTRC system 99.3 1.2E-10 2.7E-15 124.6 19.4 208 137-378 101-318 (320)
41 TIGR01175 pilM type IV pilus a 99.3 5.8E-10 1.3E-14 121.4 23.7 183 151-378 142-347 (348)
42 PTZ00452 actin; Provisional 99.2 6.3E-10 1.4E-14 121.5 19.6 218 137-379 99-348 (375)
43 PTZ00004 actin-2; Provisional 99.2 1.2E-09 2.6E-14 119.8 19.7 217 138-379 101-351 (378)
44 PTZ00281 actin; Provisional 99.2 6.4E-10 1.4E-14 121.7 16.8 218 138-380 101-350 (376)
45 PTZ00466 actin-like protein; P 99.1 5.9E-09 1.3E-13 114.0 19.5 217 138-379 106-353 (380)
46 COG4972 PilM Tfp pilus assembl 99.0 1.2E-07 2.6E-12 96.4 25.6 160 154-360 151-315 (354)
47 TIGR00241 CoA_E_activ CoA-subs 99.0 1E-08 2.2E-13 105.6 17.9 170 170-377 73-248 (248)
48 PF06406 StbA: StbA protein; 99.0 3.8E-09 8.2E-14 112.8 13.9 172 167-375 141-316 (318)
49 TIGR03192 benz_CoA_bzdQ benzoy 98.9 2.6E-07 5.7E-12 94.9 22.5 181 170-380 106-288 (293)
50 KOG0679 Actin-related protein 98.9 1.5E-07 3.3E-12 96.9 19.1 116 117-246 86-202 (426)
51 COG1924 Activator of 2-hydroxy 98.7 2.3E-06 5E-11 88.9 21.8 175 169-380 210-390 (396)
52 TIGR03286 methan_mark_15 putat 98.7 1.9E-06 4.2E-11 91.9 20.9 175 170-379 220-402 (404)
53 PRK10719 eutA reactivating fac 98.7 1.1E-07 2.4E-12 102.5 11.0 164 138-345 88-268 (475)
54 COG5277 Actin and related prot 98.6 1.1E-06 2.3E-11 96.8 17.2 192 4-246 9-204 (444)
55 TIGR02261 benz_CoA_red_D benzo 98.6 1.4E-05 3.1E-10 81.1 23.1 177 171-378 80-262 (262)
56 PF07520 SrfB: Virulence facto 98.4 5E-05 1.1E-09 88.9 24.3 329 48-382 331-836 (1002)
57 PRK15027 xylulokinase; Provisi 98.2 0.00023 5E-09 81.1 23.0 85 298-385 355-439 (484)
58 PRK10331 L-fuculokinase; Provi 98.2 0.00036 7.8E-09 79.2 24.4 53 332-385 389-441 (470)
59 PRK13317 pantothenate kinase; 98.2 0.00027 5.8E-09 73.5 21.2 48 332-379 222-273 (277)
60 TIGR02628 fuculo_kin_coli L-fu 98.1 0.00026 5.6E-09 80.2 21.7 84 298-384 361-444 (465)
61 TIGR01314 gntK_FGGY gluconate 98.0 0.0015 3.2E-08 74.9 24.1 52 332-384 401-452 (505)
62 COG1070 XylB Sugar (pentulose 97.9 0.00065 1.4E-08 77.5 20.0 81 298-382 369-450 (502)
63 TIGR02259 benz_CoA_red_A benzo 97.9 0.00025 5.3E-09 75.2 14.9 177 170-378 249-432 (432)
64 PF06277 EutA: Ethanolamine ut 97.9 0.00039 8.4E-09 75.6 16.9 116 113-235 60-178 (473)
65 PF08841 DDR: Diol dehydratase 97.9 0.00017 3.6E-09 72.0 11.9 189 162-378 106-329 (332)
66 KOG0676 Actin and related prot 97.8 0.00025 5.4E-09 75.6 12.9 91 139-245 100-192 (372)
67 COG4457 SrfB Uncharacterized p 97.7 0.0046 1E-07 68.5 21.5 84 296-381 744-847 (1014)
68 COG4819 EutA Ethanolamine util 97.1 0.0035 7.5E-08 64.0 10.4 39 192-235 142-180 (473)
69 COG1069 AraB Ribulose kinase [ 96.9 0.069 1.5E-06 59.0 19.3 215 155-384 232-482 (544)
70 KOG0797 Actin-related protein 96.9 0.0075 1.6E-07 65.1 11.3 122 111-245 195-322 (618)
71 PF02782 FGGY_C: FGGY family o 96.8 0.0014 3.1E-08 65.0 4.7 72 305-380 121-196 (198)
72 PF01869 BcrAD_BadFG: BadF/Bad 96.4 0.48 1E-05 49.4 21.2 70 306-378 197-271 (271)
73 KOG0677 Actin-related protein 96.4 0.11 2.5E-06 51.4 14.5 195 137-356 100-318 (389)
74 TIGR01315 5C_CHO_kinase FGGY-f 96.1 0.014 3.1E-07 67.3 8.3 86 298-384 409-494 (541)
75 PLN02669 xylulokinase 96.1 0.014 3.1E-07 67.3 8.0 77 299-380 416-492 (556)
76 PF14574 DUF4445: Domain of un 95.9 0.23 4.9E-06 54.5 15.5 84 293-377 289-374 (412)
77 PF14450 FtsA: Cell division p 95.6 0.022 4.7E-07 51.5 5.6 48 197-244 1-53 (120)
78 TIGR01234 L-ribulokinase L-rib 95.6 0.039 8.5E-07 63.7 9.1 83 298-384 404-487 (536)
79 KOG0680 Actin-related protein 95.6 0.8 1.7E-05 47.3 16.7 102 138-244 93-198 (400)
80 PRK00047 glpK glycerol kinase; 95.6 0.028 6.1E-07 64.3 7.6 52 332-384 403-454 (498)
81 KOG2517 Ribulose kinase and re 95.5 0.14 3E-06 57.0 12.1 53 331-384 413-465 (516)
82 TIGR01312 XylB D-xylulose kina 95.5 0.034 7.4E-07 63.4 7.8 52 332-384 390-441 (481)
83 TIGR01311 glycerol_kin glycero 95.4 0.028 6.2E-07 64.2 7.0 52 332-384 399-450 (493)
84 PLN02295 glycerol kinase 95.4 0.056 1.2E-06 62.0 9.1 52 332-384 412-463 (512)
85 TIGR00555 panK_eukar pantothen 95.3 0.18 3.9E-06 52.3 11.7 45 332-376 230-278 (279)
86 PRK04123 ribulokinase; Provisi 95.3 0.036 7.7E-07 64.3 7.3 78 300-384 409-490 (548)
87 TIGR02627 rhamnulo_kin rhamnul 95.3 0.067 1.4E-06 60.5 9.2 83 298-385 355-438 (454)
88 PTZ00294 glycerol kinase-like 95.2 0.044 9.5E-07 62.8 7.7 51 333-384 407-457 (504)
89 PRK10640 rhaB rhamnulokinase; 95.1 0.081 1.8E-06 60.0 9.3 81 300-385 345-426 (471)
90 PRK09604 UGMP family protein; 95.0 6.2 0.00013 42.5 23.1 60 315-379 242-307 (332)
91 PRK05082 N-acetylmannosamine k 95.0 1.6 3.5E-05 46.0 18.3 48 332-379 233-287 (291)
92 KOG2531 Sugar (pentulose and h 95.0 0.069 1.5E-06 57.3 7.5 55 325-380 435-489 (545)
93 PRK10854 exopolyphosphatase; P 94.9 0.65 1.4E-05 53.2 16.0 77 154-239 99-176 (513)
94 KOG0100 Molecular chaperones G 94.9 0.26 5.7E-06 52.0 11.3 104 604-744 538-642 (663)
95 PRK10939 autoinducer-2 (AI-2) 94.8 0.096 2.1E-06 60.3 8.9 52 332-384 409-460 (520)
96 PRK09698 D-allose kinase; Prov 94.6 5.7 0.00012 42.1 21.3 43 164-212 104-146 (302)
97 PRK11031 guanosine pentaphosph 94.5 0.72 1.6E-05 52.6 14.9 78 153-239 93-171 (496)
98 PRK09557 fructokinase; Reviewe 94.5 1.9 4E-05 45.8 17.3 44 164-212 96-139 (301)
99 COG1548 Predicted transcriptio 94.5 0.19 4.1E-06 50.0 8.6 73 123-213 76-148 (330)
100 PRK13310 N-acetyl-D-glucosamin 94.1 7.9 0.00017 41.0 21.1 45 163-212 95-139 (303)
101 KOG0681 Actin-related protein 94.1 0.4 8.7E-06 52.7 10.8 99 139-246 117-216 (645)
102 COG0248 GppA Exopolyphosphatas 93.5 0.57 1.2E-05 52.7 11.2 57 154-213 91-147 (492)
103 PF01968 Hydantoinase_A: Hydan 93.4 0.16 3.6E-06 53.4 6.5 64 310-376 219-283 (290)
104 COG1940 NagC Transcriptional r 93.2 5 0.00011 42.8 17.8 38 164-205 106-143 (314)
105 PF13941 MutL: MutL protein 92.8 1.6 3.5E-05 48.5 13.2 42 3-51 2-45 (457)
106 TIGR00744 ROK_glcA_fam ROK fam 92.5 4.1 8.8E-05 43.5 15.9 71 137-212 57-140 (318)
107 PTZ00297 pantothenate kinase; 92.5 13 0.00028 47.9 22.2 73 305-378 1365-1444(1452)
108 PF02541 Ppx-GppA: Ppx/GppA ph 92.3 0.44 9.6E-06 50.2 8.0 74 157-239 77-151 (285)
109 PTZ00288 glucokinase 1; Provis 92.2 2.4 5.1E-05 46.7 13.6 20 2-21 27-46 (405)
110 PF07318 DUF1464: Protein of u 92.2 1.7 3.6E-05 46.1 11.7 69 311-384 243-319 (343)
111 smart00842 FtsA Cell division 91.9 2 4.4E-05 42.0 11.6 30 152-181 157-186 (187)
112 PRK09605 bifunctional UGMP fam 91.4 32 0.0007 39.7 23.2 63 315-382 233-301 (535)
113 COG2192 Predicted carbamoyl tr 90.5 35 0.00076 38.5 22.4 81 298-382 255-337 (555)
114 PRK09585 anmK anhydro-N-acetyl 90.4 2.7 5.7E-05 45.5 11.5 70 308-380 265-338 (365)
115 PLN02666 5-oxoprolinase 90.1 3.1 6.8E-05 52.4 13.3 76 299-377 454-531 (1275)
116 PTZ00009 heat shock 70 kDa pro 89.3 2.9 6.2E-05 49.6 11.7 66 664-741 540-609 (653)
117 TIGR03706 exo_poly_only exopol 89.1 2 4.3E-05 45.5 9.4 110 120-239 55-164 (300)
118 KOG0681 Actin-related protein 89.1 0.43 9.3E-06 52.5 4.2 48 333-380 559-614 (645)
119 TIGR03723 bact_gcp putative gl 88.8 15 0.00032 39.2 15.7 56 315-375 247-308 (314)
120 COG0554 GlpK Glycerol kinase [ 87.7 1.5 3.3E-05 48.1 7.3 83 299-385 371-454 (499)
121 PRK13411 molecular chaperone D 86.8 5.2 0.00011 47.4 11.9 46 683-741 551-596 (653)
122 PRK00290 dnaK molecular chaper 86.7 4.4 9.6E-05 47.8 11.2 45 682-741 548-592 (627)
123 smart00732 YqgFc Likely ribonu 86.4 0.62 1.4E-05 40.1 3.0 22 1-22 1-22 (99)
124 PRK14878 UGMP family protein; 85.6 55 0.0012 35.0 18.4 53 315-372 229-287 (323)
125 COG2377 Predicted molecular ch 84.3 10 0.00022 40.4 11.1 172 193-381 161-344 (371)
126 PF03652 UPF0081: Uncharacteri 84.0 1.1 2.4E-05 41.2 3.5 22 1-22 1-22 (135)
127 TIGR02350 prok_dnaK chaperone 83.9 7.3 0.00016 45.7 11.2 45 682-741 546-590 (595)
128 PLN02920 pantothenate kinase 1 82.0 55 0.0012 35.7 15.6 48 332-379 297-351 (398)
129 COG5026 Hexokinase [Carbohydra 82.0 8.6 0.00019 41.9 9.6 18 2-19 76-93 (466)
130 PF02543 CmcH_NodU: Carbamoylt 81.4 25 0.00054 38.3 13.3 81 298-383 132-216 (360)
131 TIGR03281 methan_mark_12 putat 81.1 7.4 0.00016 40.4 8.4 50 333-384 263-315 (326)
132 PF03702 UPF0075: Uncharacteri 79.6 4.3 9.3E-05 44.0 6.5 71 305-380 260-337 (364)
133 KOG0101 Molecular chaperones H 78.3 6.3 0.00014 45.2 7.6 48 683-742 563-611 (620)
134 PLN02939 transferase, transfer 77.9 1.2E+02 0.0025 37.4 18.1 179 555-733 237-426 (977)
135 KOG0104 Molecular chaperones G 77.6 19 0.00041 41.8 10.9 81 650-741 648-732 (902)
136 PTZ00340 O-sialoglycoprotein e 77.3 1.1E+02 0.0024 33.0 17.1 41 311-356 247-287 (345)
137 COG2441 Predicted butyrate kin 76.3 17 0.00037 37.0 9.0 53 332-384 273-336 (374)
138 PTZ00400 DnaK-type molecular c 76.0 23 0.00051 42.0 12.0 44 683-741 590-633 (663)
139 COG0145 HyuA N-methylhydantoin 75.8 3.3 7.1E-05 48.7 4.6 42 168-213 255-296 (674)
140 CHL00094 dnaK heat shock prote 75.5 17 0.00037 42.8 10.7 44 683-741 551-594 (621)
141 PF00370 FGGY_N: FGGY family o 74.3 2.9 6.2E-05 42.8 3.4 20 3-22 2-21 (245)
142 PRK14101 bifunctional glucokin 74.2 35 0.00077 40.4 12.9 20 3-22 20-39 (638)
143 PRK00109 Holliday junction res 72.3 3.6 7.8E-05 38.0 3.1 22 1-22 4-25 (138)
144 PRK00976 hypothetical protein; 71.6 23 0.0005 37.5 9.2 51 332-384 263-315 (326)
145 COG0816 Predicted endonuclease 69.9 4.5 9.8E-05 37.3 3.2 22 1-22 2-23 (141)
146 PLN03184 chloroplast Hsp70; Pr 69.7 63 0.0014 38.5 13.6 44 683-741 588-631 (673)
147 TIGR00634 recN DNA repair prot 68.5 2.4E+02 0.0051 32.9 18.6 18 662-679 300-317 (563)
148 cd00529 RuvC_resolvase Hollida 67.8 62 0.0013 30.4 10.6 141 196-374 1-148 (154)
149 PLN02362 hexokinase 67.7 24 0.00051 40.2 8.9 33 152-184 206-240 (509)
150 PRK02224 chromosome segregatio 67.4 3E+02 0.0064 34.1 19.5 71 554-625 145-215 (880)
151 TIGR00143 hypF [NiFe] hydrogen 67.1 11 0.00024 44.8 6.4 48 332-379 658-711 (711)
152 PRK03011 butyrate kinase; Prov 67.0 19 0.00041 39.1 7.8 45 332-376 295-343 (358)
153 PF08735 DUF1786: Putative pyr 66.8 67 0.0014 32.8 11.0 93 135-236 111-206 (254)
154 cd06007 R3H_DEXH_helicase R3H 66.6 16 0.00036 28.1 5.2 29 140-168 16-44 (59)
155 PRK07058 acetate kinase; Provi 66.4 35 0.00077 37.2 9.5 47 307-357 297-344 (396)
156 TIGR03722 arch_KAE1 universal 66.4 1.9E+02 0.0041 30.9 19.0 52 317-373 232-289 (322)
157 TIGR00329 gcp_kae1 metallohydr 65.4 1.2E+02 0.0027 32.1 13.5 39 313-356 244-282 (305)
158 KOG1656 Protein involved in gl 63.8 1.5E+02 0.0032 28.9 20.7 130 634-766 70-212 (221)
159 PF10168 Nup88: Nuclear pore c 63.8 2.9E+02 0.0063 33.1 17.3 42 555-598 533-574 (717)
160 PTZ00294 glycerol kinase-like 63.1 5.8 0.00012 45.5 3.1 20 3-22 4-23 (504)
161 PTZ00107 hexokinase; Provision 63.0 28 0.00061 39.2 8.3 39 148-186 191-231 (464)
162 PLN02405 hexokinase 62.7 49 0.0011 37.6 10.2 58 150-214 204-263 (497)
163 COG0533 QRI7 Metal-dependent p 62.2 2.2E+02 0.0049 30.4 17.6 53 299-356 229-285 (342)
164 PF11593 Med3: Mediator comple 62.1 39 0.00085 36.0 8.5 50 617-668 9-58 (379)
165 PF06008 Laminin_I: Laminin Do 61.9 2E+02 0.0043 29.7 15.7 118 581-705 126-252 (264)
166 PF00012 HSP70: Hsp70 protein; 61.8 62 0.0014 37.9 11.6 68 660-741 528-597 (602)
167 cd02640 R3H_NRF R3H domain of 61.1 25 0.00055 27.2 5.3 41 127-168 5-45 (60)
168 PF00349 Hexokinase_1: Hexokin 61.1 24 0.00053 35.0 6.7 54 192-247 60-117 (206)
169 COG4012 Uncharacterized protei 60.3 2.1E+02 0.0045 29.4 17.6 89 145-247 186-277 (342)
170 KOG1385 Nucleoside phosphatase 60.3 27 0.00058 37.9 7.1 77 111-213 152-231 (453)
171 PLN02914 hexokinase 60.2 58 0.0013 36.9 10.2 58 150-214 204-263 (490)
172 TIGR03123 one_C_unchar_1 proba 59.5 6.4 0.00014 41.8 2.4 19 195-213 128-146 (318)
173 KOG0964 Structural maintenance 59.0 4.1E+02 0.009 32.4 18.1 49 687-741 328-376 (1200)
174 KOG2708 Predicted metalloprote 58.8 1.1E+02 0.0023 30.5 10.3 60 310-375 237-299 (336)
175 PRK10939 autoinducer-2 (AI-2) 58.0 7.8 0.00017 44.6 3.0 21 2-22 4-24 (520)
176 PF14450 FtsA: Cell division p 57.7 11 0.00023 33.9 3.3 20 3-22 1-20 (120)
177 PRK05183 hscA chaperone protei 56.9 1.1E+02 0.0023 36.2 12.2 44 683-741 553-596 (616)
178 PRK00039 ruvC Holliday junctio 56.7 10 0.00022 36.2 3.0 37 1-38 2-38 (164)
179 COG2971 Predicted N-acetylgluc 56.0 2.7E+02 0.0058 29.3 17.3 64 310-380 227-291 (301)
180 TIGR01991 HscA Fe-S protein as 55.6 1.2E+02 0.0026 35.6 12.3 44 683-741 537-580 (599)
181 PLN02295 glycerol kinase 55.1 9.2 0.0002 43.9 3.0 20 3-22 2-21 (512)
182 PF08317 Spc7: Spc7 kinetochor 55.0 2.9E+02 0.0064 29.5 17.4 17 683-699 272-288 (325)
183 TIGR01315 5C_CHO_kinase FGGY-f 54.8 9.5 0.00021 44.2 3.0 20 3-22 2-21 (541)
184 TIGR01234 L-ribulokinase L-rib 54.3 11 0.00023 43.7 3.4 21 2-22 2-23 (536)
185 PRK13410 molecular chaperone D 53.7 1.3E+02 0.0028 35.9 12.2 22 684-705 556-577 (668)
186 TIGR02259 benz_CoA_red_A benzo 53.1 11 0.00025 40.8 3.0 21 2-22 3-23 (432)
187 TIGR01311 glycerol_kin glycero 51.9 11 0.00024 43.0 3.0 21 2-22 2-22 (493)
188 PRK00047 glpK glycerol kinase; 51.7 11 0.00024 43.1 3.0 21 2-22 6-26 (498)
189 smart00787 Spc7 Spc7 kinetocho 51.0 3.3E+02 0.0072 28.9 16.1 32 668-699 251-283 (312)
190 COG4296 Uncharacterized protei 50.0 45 0.00098 30.0 5.6 23 620-642 90-112 (156)
191 PRK13321 pantothenate kinase; 49.1 16 0.00034 37.7 3.3 20 3-22 2-21 (256)
192 KOG0517 Beta-spectrin [Cytoske 48.8 5.5E+02 0.012 33.9 16.2 126 610-735 852-998 (2473)
193 KOG0678 Actin-related protein 48.8 2.2E+02 0.0048 30.1 11.2 100 140-244 108-208 (415)
194 PRK13318 pantothenate kinase; 48.6 16 0.00034 37.8 3.2 20 3-22 2-21 (258)
195 KOG0994 Extracellular matrix g 48.6 4.2E+02 0.0091 33.0 14.6 38 577-617 1463-1500(1758)
196 PLN02377 3-ketoacyl-CoA syntha 48.3 41 0.0009 38.2 6.7 67 304-370 165-235 (502)
197 PLN02902 pantothenate kinase 47.5 1.9E+02 0.0042 35.0 12.0 47 332-379 346-400 (876)
198 PLN02596 hexokinase-like 47.3 74 0.0016 36.1 8.4 54 154-214 208-263 (490)
199 KOG1369 Hexokinase [Carbohydra 47.1 30 0.00064 38.7 5.1 63 146-215 186-251 (474)
200 PRK04123 ribulokinase; Provisi 46.4 17 0.00036 42.2 3.3 20 3-22 5-25 (548)
201 PRK10869 recombination and rep 45.1 5.5E+02 0.012 29.8 18.4 106 560-677 246-355 (553)
202 PTZ00186 heat shock 70 kDa pre 44.2 2E+02 0.0044 34.2 11.8 46 683-741 575-620 (657)
203 COG1340 Uncharacterized archae 42.9 4.2E+02 0.0091 27.8 16.0 88 609-705 62-149 (294)
204 cd02641 R3H_Smubp-2_like R3H d 42.7 67 0.0015 24.8 5.1 29 140-168 17-45 (60)
205 cd02639 R3H_RRM R3H domain of 42.3 47 0.001 25.7 4.1 29 140-168 17-45 (60)
206 PRK04863 mukB cell division pr 41.1 9.8E+02 0.021 31.5 21.9 96 611-708 364-463 (1486)
207 COG1196 Smc Chromosome segrega 41.1 5.2E+02 0.011 33.2 15.6 74 554-627 151-231 (1163)
208 cd02646 R3H_G-patch R3H domain 40.8 61 0.0013 24.8 4.6 40 126-168 4-43 (58)
209 PLN02669 xylulokinase 40.5 22 0.00047 41.3 3.0 21 2-22 9-29 (556)
210 COG1521 Pantothenate kinase ty 40.4 1.6E+02 0.0034 30.2 8.8 118 174-345 108-225 (251)
211 PRK01433 hscA chaperone protei 40.3 2.4E+02 0.0051 33.1 11.5 24 682-705 530-553 (595)
212 cd00529 RuvC_resolvase Hollida 40.0 26 0.00056 33.0 3.0 17 3-19 2-18 (154)
213 PF06160 EzrA: Septation ring 39.6 6.7E+02 0.014 29.2 19.3 119 556-677 113-240 (560)
214 KOG0994 Extracellular matrix g 39.5 7.4E+02 0.016 31.1 14.8 36 554-599 1507-1542(1758)
215 PF11172 DUF2959: Protein of u 39.4 3.8E+02 0.0083 26.3 11.3 22 608-629 38-59 (201)
216 PF00480 ROK: ROK family; Int 38.7 1E+02 0.0023 29.3 7.1 88 114-212 31-134 (179)
217 COG3426 Butyrate kinase [Energ 38.3 84 0.0018 32.5 6.2 48 329-376 293-344 (358)
218 PF15043 CNRIP1: CB1 cannabino 38.2 3.5E+02 0.0075 25.6 9.7 72 421-492 29-118 (161)
219 KOG0103 Molecular chaperones H 38.2 1E+02 0.0022 35.9 7.6 66 580-654 650-725 (727)
220 PLN03170 chalcone synthase; Pr 38.1 88 0.0019 34.6 7.2 51 309-359 104-155 (401)
221 PF08006 DUF1700: Protein of u 38.0 95 0.0021 30.0 6.7 57 589-653 5-62 (181)
222 TIGR00250 RNAse_H_YqgF RNAse H 37.8 22 0.00047 32.5 2.0 19 4-22 1-19 (130)
223 PLN03173 chalcone synthase; Pr 37.3 1E+02 0.0022 34.0 7.5 50 310-359 101-151 (391)
224 KOG0996 Structural maintenance 35.6 1E+03 0.022 30.0 19.5 20 554-573 774-793 (1293)
225 PF06840 DUF1241: Protein of u 35.5 2.9E+02 0.0064 25.9 8.9 35 643-679 12-46 (154)
226 TIGR03185 DNA_S_dndD DNA sulfu 35.5 8.2E+02 0.018 29.0 17.9 68 554-625 369-437 (650)
227 PF14574 DUF4445: Domain of un 35.3 1.9E+02 0.0041 32.1 9.0 54 304-357 55-108 (412)
228 TIGR00634 recN DNA repair prot 34.6 7.9E+02 0.017 28.6 18.5 113 581-705 276-390 (563)
229 PRK00292 glk glucokinase; Prov 34.5 36 0.00077 36.3 3.3 49 162-212 88-144 (316)
230 PF04848 Pox_A22: Poxvirus A22 34.4 44 0.00096 30.9 3.4 21 1-21 1-21 (143)
231 PF07106 TBPIP: Tat binding pr 33.9 4.2E+02 0.0091 25.2 10.3 91 604-699 67-157 (169)
232 PHA02566 alt ADP-ribosyltransf 33.9 8.4E+02 0.018 28.7 16.2 50 684-739 425-476 (684)
233 PF02801 Ketoacyl-synt_C: Beta 33.7 42 0.00092 29.9 3.2 45 313-357 25-71 (119)
234 PRK13331 pantothenate kinase; 33.6 39 0.00084 34.7 3.2 22 1-22 7-28 (251)
235 PLN03172 chalcone synthase fam 33.6 1.1E+02 0.0024 33.7 7.1 52 308-359 99-151 (393)
236 PLN02854 3-ketoacyl-CoA syntha 33.5 93 0.002 35.6 6.5 50 310-359 187-237 (521)
237 PF05378 Hydant_A_N: Hydantoin 33.2 49 0.0011 31.9 3.7 18 4-21 2-19 (176)
238 TIGR02168 SMC_prok_B chromosom 32.4 1.1E+03 0.025 29.8 18.0 45 555-599 152-196 (1179)
239 TIGR03545 conserved hypothetic 31.6 7.9E+02 0.017 28.5 13.6 13 394-406 51-63 (555)
240 TIGR02169 SMC_prok_A chromosom 31.6 1.1E+03 0.023 30.1 16.7 45 554-598 149-193 (1164)
241 PRK00409 recombination and DNA 31.6 6.4E+02 0.014 30.7 13.5 16 554-569 498-513 (782)
242 PRK03918 chromosome segregatio 31.5 1.1E+03 0.023 29.1 21.2 14 336-349 26-41 (880)
243 PRK13326 pantothenate kinase; 30.6 46 0.00099 34.4 3.2 21 2-22 7-27 (262)
244 KOG0517 Beta-spectrin [Cytoske 30.5 1.5E+03 0.032 30.4 17.0 102 608-709 949-1079(2473)
245 PLN03168 chalcone synthase; Pr 30.2 1.3E+02 0.0028 33.2 6.9 54 306-359 96-150 (389)
246 TIGR02707 butyr_kinase butyrat 30.0 59 0.0013 35.2 4.1 44 332-375 293-340 (351)
247 PF00349 Hexokinase_1: Hexokin 29.7 50 0.0011 32.8 3.2 34 151-184 168-204 (206)
248 PF15290 Syntaphilin: Golgi-lo 29.1 6.6E+02 0.014 26.0 11.6 19 610-628 90-109 (305)
249 PRK13320 pantothenate kinase; 28.9 53 0.0011 33.6 3.3 22 1-22 2-23 (244)
250 TIGR01319 glmL_fam conserved h 28.9 31 0.00066 38.4 1.6 31 324-354 381-414 (463)
251 KOG0804 Cytoplasmic Zn-finger 28.7 8.5E+02 0.018 27.1 12.9 31 632-662 375-405 (493)
252 COG0497 RecN ATPase involved i 28.5 9.7E+02 0.021 27.7 22.0 19 611-629 220-238 (557)
253 KOG1794 N-Acetylglucosamine ki 28.4 7.1E+02 0.015 26.1 17.5 50 334-383 265-319 (336)
254 COG5026 Hexokinase [Carbohydra 28.3 64 0.0014 35.4 3.8 30 192-221 72-102 (466)
255 PRK04863 mukB cell division pr 28.1 1.5E+03 0.033 29.9 21.5 16 611-626 323-338 (1486)
256 PF00435 Spectrin: Spectrin re 28.0 3.4E+02 0.0075 22.3 11.8 43 612-654 11-53 (105)
257 TIGR01069 mutS2 MutS2 family p 27.4 7.9E+02 0.017 29.9 13.3 16 554-569 493-508 (771)
258 PF02075 RuvC: Crossover junct 27.3 37 0.00081 31.8 1.7 35 3-38 1-35 (149)
259 PF05537 DUF759: Borrelia burg 27.3 2.6E+02 0.0056 30.4 8.0 57 684-741 351-409 (431)
260 KOG0797 Actin-related protein 26.8 22 0.00047 39.5 0.1 50 333-382 527-591 (618)
261 PF09763 Sec3_C: Exocyst compl 26.6 1.2E+03 0.025 28.0 16.6 113 612-737 40-164 (701)
262 KOG3133 40 kDa farnesylated pr 26.6 3.8E+02 0.0083 27.4 8.6 63 585-654 142-204 (267)
263 PF07765 KIP1: KIP1-like prote 26.5 88 0.0019 25.3 3.4 36 644-679 34-70 (74)
264 COG4012 Uncharacterized protei 26.2 2E+02 0.0043 29.5 6.5 72 196-274 2-96 (342)
265 PRK04778 septation ring format 26.1 1.1E+03 0.024 27.5 19.2 168 557-740 118-294 (569)
266 KOG4360 Uncharacterized coiled 26.0 1E+03 0.022 27.0 13.2 43 686-728 274-316 (596)
267 TIGR01312 XylB D-xylulose kina 25.8 38 0.00082 38.5 1.8 19 4-22 1-19 (481)
268 PRK13324 pantothenate kinase; 25.7 64 0.0014 33.3 3.2 20 3-22 2-21 (258)
269 KOG1369 Hexokinase [Carbohydra 25.6 3E+02 0.0065 31.0 8.5 27 192-218 83-109 (474)
270 PF01548 DEDD_Tnp_IS110: Trans 25.5 92 0.002 28.5 4.1 20 3-22 1-20 (144)
271 TIGR02627 rhamnulo_kin rhamnul 25.4 35 0.00076 38.5 1.4 18 4-21 1-18 (454)
272 KOG2517 Ribulose kinase and re 25.3 57 0.0012 36.9 2.9 17 3-19 8-24 (516)
273 PF08580 KAR9: Yeast cortical 25.0 9.2E+02 0.02 28.8 12.9 44 687-730 130-174 (683)
274 PF09286 Pro-kuma_activ: Pro-k 24.9 94 0.002 28.6 4.0 47 584-630 26-76 (143)
275 PF06637 PV-1: PV-1 protein (P 24.9 9.1E+02 0.02 26.2 13.1 14 610-623 264-277 (442)
276 PLN02192 3-ketoacyl-CoA syntha 24.9 1.9E+02 0.0042 33.0 7.0 56 304-359 169-225 (511)
277 PF11802 CENP-K: Centromere-as 24.8 7.8E+02 0.017 25.4 13.4 39 608-648 109-147 (268)
278 COG3894 Uncharacterized metal- 24.8 2.1E+02 0.0046 32.1 6.9 47 194-240 163-210 (614)
279 TIGR01319 glmL_fam conserved h 24.6 56 0.0012 36.4 2.7 17 196-212 250-266 (463)
280 PRK00180 acetate kinase A/prop 24.6 1.5E+02 0.0033 32.6 6.0 48 307-357 301-349 (402)
281 KOG1029 Endocytic adaptor prot 24.3 1.3E+03 0.028 27.7 19.1 16 610-625 417-432 (1118)
282 KOG0979 Structural maintenance 23.8 1.5E+03 0.032 28.2 20.1 39 694-732 339-377 (1072)
283 PF13941 MutL: MutL protein 23.7 1.9E+02 0.0041 32.5 6.6 47 197-243 2-49 (457)
284 cd00176 SPEC Spectrin repeats, 23.4 6.5E+02 0.014 23.9 14.4 34 699-736 118-151 (213)
285 PRK03918 chromosome segregatio 23.4 1.4E+03 0.031 28.0 18.2 62 606-669 656-717 (880)
286 PTZ00432 falcilysin; Provision 23.4 8.4E+02 0.018 31.2 13.0 47 682-731 596-642 (1119)
287 PF07851 TMPIT: TMPIT-like pro 23.3 8.8E+02 0.019 26.0 11.1 79 634-721 20-98 (330)
288 PRK07515 3-oxoacyl-(acyl carri 23.3 77 0.0017 34.6 3.6 48 308-357 266-313 (372)
289 KOG4001 Axonemal dynein light 23.2 5.1E+02 0.011 25.3 8.3 48 577-626 194-241 (259)
290 PF12128 DUF3584: Protein of u 23.1 1.7E+03 0.037 28.7 19.6 50 608-657 742-796 (1201)
291 PRK12440 acetate kinase; Revie 23.1 3.6E+02 0.0079 29.7 8.4 46 308-357 300-346 (397)
292 TIGR03545 conserved hypothetic 23.1 7.3E+02 0.016 28.8 11.4 67 582-653 164-230 (555)
293 PF04614 Pex19: Pex19 protein 22.9 7.3E+02 0.016 25.4 10.3 65 585-657 122-187 (248)
294 PF01150 GDA1_CD39: GDA1/CD39 22.5 1E+02 0.0022 34.6 4.3 21 194-214 163-183 (434)
295 PF00815 Histidinol_dh: Histid 22.2 1.4E+02 0.003 33.0 5.1 48 138-185 137-185 (412)
296 COG0443 DnaK Molecular chapero 22.2 8.5E+02 0.018 28.5 11.9 43 683-741 531-573 (579)
297 COG1940 NagC Transcriptional r 22.2 3.5E+02 0.0076 28.5 8.3 53 192-244 3-55 (314)
298 PF11458 Mistic: Membrane-inte 22.0 2.1E+02 0.0046 23.0 4.6 20 606-625 3-22 (84)
299 PLN02914 hexokinase 22.0 2.2E+02 0.0048 32.4 6.8 24 193-216 93-116 (490)
300 PRK12408 glucokinase; Provisio 21.0 63 0.0014 34.8 2.2 19 3-21 18-36 (336)
301 PRK12879 3-oxoacyl-(acyl carri 20.9 1.9E+02 0.0042 30.6 6.1 47 309-358 221-267 (325)
302 PF15066 CAGE1: Cancer-associa 20.9 1.2E+03 0.026 26.1 15.8 115 577-699 403-522 (527)
303 COG4020 Uncharacterized protei 20.7 1E+02 0.0022 31.2 3.3 53 330-384 266-321 (332)
304 COG0533 QRI7 Metal-dependent p 20.6 2.2E+02 0.0047 30.6 5.9 45 305-349 44-88 (342)
305 TIGR03723 bact_gcp putative gl 20.3 2.7E+02 0.0058 29.7 6.8 67 307-374 45-117 (314)
306 TIGR00329 gcp_kae1 metallohydr 20.2 2.8E+02 0.0061 29.3 6.9 66 307-373 44-115 (305)
307 COG4942 Membrane-bound metallo 20.1 1.2E+03 0.026 25.8 17.6 24 612-635 111-134 (420)
No 1
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-123 Score=996.73 Aligned_cols=723 Identities=49% Similarity=0.780 Sum_probs=680.7
Q ss_pred CeEEEEEcCccceEEEEEEcCCceEEEeCCCCCccceEEEEeeCCceeecHHHHhhhhhCCcchHhHHHHhcCCCCCChH
Q 004211 1 MSVVGFDIGNENCVIAAVKQGGMLDVLLNDESKRETPTVVSFSEKQRFLGSAGAASAMMNPKSTISQVKRLLGRKFREDD 80 (768)
Q Consensus 1 m~viGID~GTt~s~va~~~~g~~~~ii~n~~~~r~~Ps~V~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~ 80 (768)
|+|+|||||..+|.+|+.+.|+ ++++.|+.|+|.||++|+|.+++|++|.+|.++..+|+.+++..+||++|+.++||.
T Consensus 1 msvvG~D~Gn~nc~iavAr~~g-Ie~i~nd~Snr~TPa~vsfg~K~R~~G~aak~~~~~n~kntv~~~KRl~Gr~f~dP~ 79 (727)
T KOG0103|consen 1 MSVVGFDLGNENCYIAVARQGG-IEVVANDYSNRETPAIVSFGPKNRFIGVAAKNQQTTNVKNTVSNFKRLIGRKFSDPE 79 (727)
T ss_pred CCceeeeccccceeeeeeccCC-ceeeeeccccccCcceeeeccccceeeeccccceeecccccchhhhhhhccccCChH
Confidence 8999999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhccCCceeeecCCCCEEEEEEecCceeEecHHHHHHHHHHHHHHHHHhhccCCCCeEEEEeCCCCCHHHHHHHHHH
Q 004211 81 VQKDLKLFPFETCESHDGGILIMLEYLGETHKFTPVQILGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDVQRRAYLDA 160 (768)
Q Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~A 160 (768)
+|.+.+.+|+.++..+||.+++.+.|.|+.+.|++++|++|+|.+|+..++..+..++.+|||+||+||++.||+++.+|
T Consensus 80 ~q~~~~~~~~~vv~~~dg~vgi~v~ylge~~~ft~~Qv~Am~l~klk~~ae~~l~~~v~DcvIavP~~FTd~qRravldA 159 (727)
T KOG0103|consen 80 VQREIKSLPRSVVQLKDGDVGIKVEYLGEKHPFTPEQVLAMLLTKLKATAEKNLKSPVSDCVIAVPSYFTDSQRRAVLDA 159 (727)
T ss_pred hhhcccccchheeecCCCCcceeehcccCCCCCChHHHHHHHHHHHHHHHHHhcCCCCCCeeEeccccccHHHHHHHHhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCceeeccchHHHHHHhhhcccCCC--CCCCcEEEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCCchhhHHHH
Q 004211 161 ATIAGLKPLRLMHDCTATALGYGIYKTDFS--NVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEV 238 (768)
Q Consensus 161 a~~AGl~~~~li~Ep~Aaal~y~~~~~~~~--~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~d~~ 238 (768)
|++|||++++|++|.+|+|++||++++++| ..++.+|+++|||++++.+|++.|..|.+.++++.+|..+||++||..
T Consensus 160 A~iagLn~lrLmnd~TA~Al~ygiyKtDLP~~~ekpr~v~fvD~GHS~~q~si~aF~kG~lkvl~ta~D~~lGgr~fDe~ 239 (727)
T KOG0103|consen 160 ARIAGLNPLRLMNDTTATALAYGIYKTDLPENEEKPRNVVFVDIGHSSYQVSIAAFTKGKLKVLATAFDRKLGGRDFDEA 239 (727)
T ss_pred HhhcCccceeeeecchHhHhhcccccccCCCcccCcceEEEEecccccceeeeeeeccCcceeeeeecccccccchHHHH
Confidence 999999999999999999999999999997 567899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcccCccCChHHHHHHHHHHHHHhhhcCCCCeeeEEEeccccCcceEEEecHHHHHHHHHHHHHHHHHH
Q 004211 239 LSSYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANAEAPLNIECLMNEKDVKGFIRREEFEKLSSSLLERMRIP 318 (768)
Q Consensus 239 l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~~~i~~l~~~~d~~~~itr~~fe~~~~~~~~~i~~~ 318 (768)
|.+||+.+|+.+|++++..|+++..||+.+||++|+.||+|...+++|++++++.|++..|+|++||++|.|+++++..+
T Consensus 240 L~~hfa~efk~kykidv~sn~kA~lRL~~~~EKlKK~lSAN~~~plNIEcfM~d~dvs~~i~ReEfEel~~plL~rv~~p 319 (727)
T KOG0103|consen 240 LIDHFAKEFKTKYKIDVRSNAKAKLRLLAECEKLKKVLSANTELPLNIECFMNDKDVSSKIKREEFEELSAPLLERVEVP 319 (727)
T ss_pred HHHHHHHHhccccccchhhchhHHHHHHHHHHHHHHHhhcCcCCCcchhheeecchhhhhccHHHHHHHHHHHHHhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCCcCEEEEecCCCChHHHHHHHHhhcCCCCCCcCCchhHHHhhHHHHhhHhcCCccccceEEeeccce
Q 004211 319 CQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQCAMLSPQYCVREFEVQDSFPF 398 (768)
Q Consensus 319 i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~GAa~~a~~ls~~~~~~~~~~~d~~~~ 398 (768)
+..+|+++++..+||+.|.+|||+||+|.|+++|.++||.++.+++|.|||||+|||++||++||.||++.|.++|+.||
T Consensus 320 ~~~~l~d~~l~~edi~~VEiVGg~sripaike~Is~~Fgke~s~TlN~dEavarG~ALqcAIlSP~frVRef~v~Di~py 399 (727)
T KOG0103|consen 320 LLKALADAKLKVEDIHAVEIVGGLSRIPAIKEMISDFFGKELSRTLNQDEAVARGAALQCAILSPTFRVREFSVEDIVPY 399 (727)
T ss_pred HHHHHHHhcCccccceeEEEecCcccchHHHHHHHHHhCCcccccccHHHHHHHhHHHHHHhcCccccceecceecccce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEecCCCcccceeEEEecCCCCCCceeEEEEeecCceEEEEEEeccccCCCCCCCcceeEEecCCCCCCC-CcceEE
Q 004211 399 SIGFSSEKGPICTFSNGVLLPKGQPFPSVKILTLHRSNGFQLQAFYADQNELPSVVSPQISSFMIGPFQTSHA-ETARVK 477 (768)
Q Consensus 399 ~i~i~~~~~~~~~~~~~~l~~~~~~~p~~k~~~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~-~~~~i~ 477 (768)
+|.+.|.....+......+||+|.++|.+|.+||++.++|++.+.|.+.+.+| .....|++|+++++.+... +..+++
T Consensus 400 sIs~~w~~~~ed~~~~~evF~~~~~~p~~K~lT~~Rk~~F~lea~yt~~~~lp-~~~~kI~~~~i~~v~~~~~ge~skVK 478 (727)
T KOG0103|consen 400 SISLRWVKQGEDGGSVTEVFPKGHPSPSVKLLTFNRKGPFTLEAKYTKVNKLP-YPKPKIEKWTITGVTPSEDGEFSKVK 478 (727)
T ss_pred eEEEEeccccccCCCceeeecCCCCCCCceEEEEEecCceEEEEEeccccccC-CCCCceeeEEecccccCcccccccee
Confidence 99999988765555668999999999999999999999999999999988887 7888999999999998755 678999
Q ss_pred EEEEEcCCccEEEEeeeeeeeeeecccccccccccccccccccCCCCCCCCCCcccccccccceeeeeeeecccCCCCCH
Q 004211 478 VRVHLDLDGVVRVQSASLIEEFVDDSVRRESRDAHLTLEEDAKSDHTPATAIDPEINRKGKVLKRLEIPVNENVNGGMTK 557 (768)
Q Consensus 478 v~~~~d~~Gil~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~i~~~~~~~ls~ 557 (768)
|++++|.+|+++|..+.++++.++++ +++... +.+.. +....... +.+.|++.++..+++.....++|+.
T Consensus 479 vkvr~n~~Gi~~i~sA~~~e~~~vee-v~~~~~-----e~~~~--~~~~~~~~--~~~~k~kvk~~~L~~~~~~~~~l~~ 548 (727)
T KOG0103|consen 479 VKVRLNEHGIDTIESATLIEDIEVEE-VPEEPM-----EYDDA--AKMLERIA--PAENKKKVKKVDLPIEAYTKGALIT 548 (727)
T ss_pred EEEEEcCccceeeecceeecccchhc-cccchh-----hhhcc--hhhhhhhc--cccccceeeeccccceeeeccccCH
Confidence 99999999999999999998777665 332110 00000 00000000 1112567888899999887678999
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHHHHHHHhhHhhccCCHHHHHHHHHHHHHHHHHHhhcCCCccHHHH
Q 004211 558 TELSEAVEKEHQLVQQDLKMERTKDRKNALESYVYEMRDKISNIYRSFATESEREGISRNLRDTEEWLYEDGDDESENVY 637 (768)
Q Consensus 558 ~e~~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~t~~e~~~l~~~l~~~~~WL~~~g~~a~~~~~ 637 (768)
.+++..++++.+|..+|+...++.+++|+||+|||+||++|.+.|.+|+++++|+.|...|+++++|||++|++.++..|
T Consensus 549 ~~l~~~~e~E~~M~~qD~~~~Et~D~KNaleeyVY~~R~kl~~~y~~f~~~a~~e~~~~~l~~~E~wlyedGed~~k~~Y 628 (727)
T KOG0103|consen 549 DELELYIEKENKMILQDKLEKETVDAKNALEEYVYDMRDKLSDKYEDFITDAEREKLKKMLTDTEEWLYEDGEDQTKAVY 628 (727)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhccHHHHHHHHHHHHHHHhhhhhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 004211 638 AERLEDLKKLVDPIEGRYKDEEARAQATGALLKCAMDYRKVVEAHSLPSKVRDAVIDECSKAEEWLREKVTQQDSLPKDA 717 (768)
Q Consensus 638 ~~kl~~L~~~~~pi~~R~~e~~~rp~a~~~l~~~l~~~~~~~~~~~~~~~e~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~ 717 (768)
..||.+|+.++. ..|+++.+.||++++.+.+.|+.++..+ +.+..++...|++.+.|++.++.+|.+++++.
T Consensus 629 ~~kl~elk~~g~--~~r~~e~~~r~k~~d~~~~~i~~~r~~~------~~~~~k~~~~~~~a~kw~~~~~~~q~~~~~t~ 700 (727)
T KOG0103|consen 629 VAKLEELKKLGD--KKRFDENEERPKAFDELGKKIQEIRKAI------ESEMEKVLLEIEEAEKWLERKSNKQNKLSKTA 700 (727)
T ss_pred HHHHHHHHhhhh--hhhhhhhhhhhHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHhhhhhhhhcccCCC
Confidence 999999999999 9999999999999999999999999998 44899999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHHHhhhhc-CCC
Q 004211 718 DPILWSTEIKRKSEALDLTCKCIM-RSN 744 (768)
Q Consensus 718 dP~~~~~di~~k~~~l~~~~~~i~-kpk 744 (768)
+| +.+++++.+.++|++.|.++. +||
T Consensus 701 ~p-v~~~e~~~~~~~l~~~~~~i~~~~k 727 (727)
T KOG0103|consen 701 DP-VPSSEIESEAKELNNTCSDIISKPK 727 (727)
T ss_pred CC-CchHHHHHhhhhhccccccccccCC
Confidence 99 999999999999999999999 876
No 2
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-122 Score=926.12 Aligned_cols=601 Identities=29% Similarity=0.524 Sum_probs=572.4
Q ss_pred eEEEEEcCccceEEEEEEcCCceEEEeCCCCCccceEEEEeeCCceeecHHHHhhhhhCCcchHhHHHHhcCCCCCChHH
Q 004211 2 SVVGFDIGNENCVIAAVKQGGMLDVLLNDESKRETPTVVSFSEKQRFLGSAGAASAMMNPKSTISQVKRLLGRKFREDDV 81 (768)
Q Consensus 2 ~viGID~GTt~s~va~~~~g~~~~ii~n~~~~r~~Ps~V~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~~ 81 (768)
+|||||||||||||+++++|. ++|+.|++|+|.+||+|+|.+++|++|++|+++...||++|+++.|||||+.++++.+
T Consensus 37 tvigIdLGTTYsCVgV~kNgr-vEIiANdQGNRItPSyVaFt~derLiGdAAKNQ~~~NPenTiFD~KRLIGr~~~d~~v 115 (663)
T KOG0100|consen 37 TVIGIDLGTTYSCVGVYKNGR-VEIIANDQGNRITPSYVAFTDDERLIGDAAKNQLTSNPENTIFDAKRLIGRKFNDKSV 115 (663)
T ss_pred eEEEEecCCceeeEEEEeCCe-EEEEecCCCCccccceeeeccchhhhhhHhhcccccCcccceechHHHhCcccCChhh
Confidence 589999999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhccCCceeeecCCCCEEEEEEec-CceeEecHHHHHHHHHHHHHHHHHhhccCCCCeEEEEeCCCCCHHHHHHHHHH
Q 004211 82 QKDLKLFPFETCESHDGGILIMLEYL-GETHKFTPVQILGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDVQRRAYLDA 160 (768)
Q Consensus 82 ~~~~~~~~~~~~~~~~g~~~~~v~~~-~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~A 160 (768)
|.+++++||+++.. ++.+.++|... |+.+.|+|+++++|+|.++++.|+.++|..+..+|+||||||++.||+++++|
T Consensus 116 q~Dik~~Pfkvv~k-~~kp~i~v~v~~g~~K~FtPeEiSaMiL~KMKe~AEayLGkkv~~AVvTvPAYFNDAQrQATKDA 194 (663)
T KOG0100|consen 116 QKDIKFLPFKVVNK-DGKPYIQVKVGGGETKVFTPEEISAMILTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKDA 194 (663)
T ss_pred hhhhhcCceEEEcC-CCCccEEEEccCCcccccCHHHHHHHHHHHHHHHHHHHhCCcccceEEecchhcchHHHhhhccc
Confidence 99999999999877 68889999877 66889999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCceeeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCCchhhHHHHHH
Q 004211 161 ATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEVLS 240 (768)
Q Consensus 161 a~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~d~~l~ 240 (768)
..+|||+++++||||+|||++||+++. ....++||||+||||||+|++.+.+|.|+|+++.||.+|||.+||++++
T Consensus 195 GtIAgLnV~RIiNePTaAAIAYGLDKk----~gEknilVfDLGGGTFDVSlLtIdnGVFeVlaTnGDThLGGEDFD~rvm 270 (663)
T KOG0100|consen 195 GTIAGLNVVRIINEPTAAAIAYGLDKK----DGEKNILVFDLGGGTFDVSLLTIDNGVFEVLATNGDTHLGGEDFDQRVM 270 (663)
T ss_pred ceeccceEEEeecCccHHHHHhccccc----CCcceEEEEEcCCceEEEEEEEEcCceEEEEecCCCcccCccchHHHHH
Confidence 999999999999999999999999886 4678999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcccCccCChHHHHHHHHHHHHHhhhcCCCCeeeEEEeccccCcceEEEecHHHHHHHHHHHHHHHHHHHH
Q 004211 241 SYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANAEAPLNIECLMNEKDVKGFIRREEFEKLSSSLLERMRIPCQ 320 (768)
Q Consensus 241 ~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~~~i~~l~~~~d~~~~itr~~fe~~~~~~~~~i~~~i~ 320 (768)
+||.+-|+++++.|++.+.+++.+|+++||++|+.||+..++.+.|+++++|.||+-++||+.||++..+++.+...+++
T Consensus 271 ~~fiklykkK~gkDv~kdnkA~~KLrRe~EkAKRaLSsqhq~riEIeS~fdG~DfSEtLtRAkFEElNmDLFr~TlkPv~ 350 (663)
T KOG0100|consen 271 EYFIKLYKKKHGKDVRKDNKAVQKLRREVEKAKRALSSQHQVRIEIESLFDGVDFSETLTRAKFEELNMDLFRKTLKPVQ 350 (663)
T ss_pred HHHHHHHhhhcCCccchhhHHHHHHHHHHHHHHhhhccccceEEeeeeccccccccchhhhhHHHHhhhHHHHHhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCCCcCEEEEecCCCChHHHHHHHHhhc-CCCCCCcCCchhHHHhhHHHHhhHhcCCccccceEEeecccee
Q 004211 321 KALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLF-NREPGRTINASECVARGCALQCAMLSPQYCVREFEVQDSFPFS 399 (768)
Q Consensus 321 ~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~f-g~~v~~~~n~~eava~GAa~~a~~ls~~~~~~~~~~~d~~~~~ 399 (768)
++|+.+++...+|+.|+||||++|||.||++|+++| |++.++.+|||||||+|||++|..+|+.....++++.|++|.+
T Consensus 351 kvl~Ds~lkKsdideiVLVGGsTrIPKvQqllk~fF~GKepskGinPdEAVAYGAAVQaGvlsGee~t~divLLDv~pLt 430 (663)
T KOG0100|consen 351 KVLEDSDLKKSDIDEIVLVGGSTRIPKVQQLLKDFFNGKEPSKGINPDEAVAYGAAVQAGVLSGEEDTGDIVLLDVNPLT 430 (663)
T ss_pred HHHhhcCcccccCceEEEecCcccChhHHHHHHHHhCCCCccCCCChHHHHHhhhhhhhcccccccCcCcEEEEeecccc
Confidence 999999999999999999999999999999999999 7999999999999999999999999999889999999999999
Q ss_pred eEEEecCCCcccceeEEEecCCCCCCceeEEEEeec--CceEEEEEEeccccCCCCCCCcceeEEecCCCCCCCCcceEE
Q 004211 400 IGFSSEKGPICTFSNGVLLPKGQPFPSVKILTLHRS--NGFQLQAFYADQNELPSVVSPQISSFMIGPFQTSHAETARVK 477 (768)
Q Consensus 400 i~i~~~~~~~~~~~~~~l~~~~~~~p~~k~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~i~ 477 (768)
+||++-+| .+..|+|||+.+|.+|+..|++. ++-++.+...++++....+|+.+|.|.++||||+|.|.|+|+
T Consensus 431 lGIETvGG-----VMTklI~RNTviPTkKSQvFsTa~DnQ~tV~I~vyEGER~mtkdn~lLGkFdltGipPAPRGvpqIE 505 (663)
T KOG0100|consen 431 LGIETVGG-----VMTKLIPRNTVIPTKKSQVFSTAQDNQPTVTIQVYEGERPMTKDNHLLGKFDLTGIPPAPRGVPQIE 505 (663)
T ss_pred ceeeeecc-----eeeccccCCcccCccccceeeecccCCceEEEEEeeccccccccccccccccccCCCCCCCCCccEE
Confidence 99999998 89999999999999999988874 444444433355666679999999999999999999999999
Q ss_pred EEEEEcCCccEEEEeeeeeeeeeecccccccccccccccccccCCCCCCCCCCcccccccccceeeeeeeecccCCCCCH
Q 004211 478 VRVHLDLDGVVRVQSASLIEEFVDDSVRRESRDAHLTLEEDAKSDHTPATAIDPEINRKGKVLKRLEIPVNENVNGGMTK 557 (768)
Q Consensus 478 v~~~~d~~Gil~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~i~~~~~~~ls~ 557 (768)
|+|.+|.||||+|++.+ |.++++..|+|++.. ++||+
T Consensus 506 VtFevDangiL~VsAeD------------------------------------------Kgtg~~~kitItNd~-~rLt~ 542 (663)
T KOG0100|consen 506 VTFEVDANGILQVSAED------------------------------------------KGTGKKEKITITNDK-GRLTP 542 (663)
T ss_pred EEEEEccCceEEEEeec------------------------------------------cCCCCcceEEEecCC-CCCCH
Confidence 99999999999999853 667777889999887 78999
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHHHHHHHhh--HhhccCCHHHHHHHHHHHHHHHHHHhhcCCCccHH
Q 004211 558 TELSEAVEKEHQLVQQDLKMERTKDRKNALESYVYEMRDKISN--IYRSFATESEREGISRNLRDTEEWLYEDGDDESEN 635 (768)
Q Consensus 558 ~e~~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~--~~~~~~t~~e~~~l~~~l~~~~~WL~~~g~~a~~~ 635 (768)
++|++++...+++...|+..+++.++||+||+|.|.|++.+.+ .+...+++++++.+...+++.-+||..+ .+|.++
T Consensus 543 EdIerMv~eAekFAeeDk~~KekieaRN~LE~YayslKnqi~dkekLg~Kl~~edKe~~e~av~e~~eWL~~n-~~a~~E 621 (663)
T KOG0100|consen 543 EDIERMVNEAEKFAEEDKKLKEKIEARNELESYAYSLKNQIGDKEKLGGKLSDEDKETIEDAVEEALEWLESN-QDASKE 621 (663)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHhhhccCchhHhcccCChhHHHHHHHHHHHHHHHHhhc-ccccHH
Confidence 9999999999999999999999999999999999999999975 4788999999999999999999999998 699999
Q ss_pred HHHHHHHHHHHhHhHHHHhhHh
Q 004211 636 VYAERLEDLKKLVDPIEGRYKD 657 (768)
Q Consensus 636 ~~~~kl~~L~~~~~pi~~R~~e 657 (768)
+|.+|+++|..+++||...++.
T Consensus 622 e~~ek~kele~vv~PiisklY~ 643 (663)
T KOG0100|consen 622 EFKEKKKELEAVVQPIISKLYG 643 (663)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999998765
No 3
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.9e-108 Score=875.71 Aligned_cols=730 Identities=29% Similarity=0.458 Sum_probs=633.7
Q ss_pred eEEEEEcCccceEEEEEEcCCceEEEeCCCCCccceEEEEeeCCceeecHHHHhhhhhCCcchHhHHHHhcCCCCCChHH
Q 004211 2 SVVGFDIGNENCVIAAVKQGGMLDVLLNDESKRETPTVVSFSEKQRFLGSAGAASAMMNPKSTISQVKRLLGRKFREDDV 81 (768)
Q Consensus 2 ~viGID~GTt~s~va~~~~g~~~~ii~n~~~~r~~Ps~V~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~~ 81 (768)
+|++||+||.|++||+++||.|++|++|..++|++|++|+|.+++|+||++|.+.+.++|.+++.+++.|+|+...+|.+
T Consensus 23 AvmsVDlGse~~Kv~vVkPGvPmeIvLn~esrRKtp~~vafk~~eR~fg~~A~~ma~r~P~~~~~~l~~llgk~~~~~~v 102 (902)
T KOG0104|consen 23 AVMSVDLGSEWIKVAVVKPGVPMEIVLNKESRRKTPSIVAFKGGERIFGEAAASMATRFPQSTYRQLKDLLGKSLDDPTV 102 (902)
T ss_pred hheeeecccceeEEEEecCCCCeEEeechhhcccCcceEEecCCceehhhhhhhhhhcCcHHHHHHHHHHhCcccCCcHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhccCCc-eeeecC-CCCEEEEEEecCceeEecHHHHHHHHHHHHHHHHHhhccCCCCeEEEEeCCCCCHHHHHHHHH
Q 004211 82 QKDLKLFPF-ETCESH-DGGILIMLEYLGETHKFTPVQILGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDVQRRAYLD 159 (768)
Q Consensus 82 ~~~~~~~~~-~~~~~~-~g~~~~~v~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~ 159 (768)
+.+.+.+|+ .++.++ ++++.|.+. + ...|++|+|+||+|.+.++.|+.+...++.++|||||.||++.||+++.+
T Consensus 103 ~ly~~~~p~~e~v~d~~rstV~F~i~--d-~~~ysvEellAMil~~a~~~ae~~a~~~Ikd~ViTVP~~F~qaeR~all~ 179 (902)
T KOG0104|consen 103 DLYQKRFPFFELVEDPQRSTVVFKIS--D-QEEYSVEELLAMILQYAKSLAEEYAKQPIKDMVITVPPFFNQAERRALLQ 179 (902)
T ss_pred HHHHhcCCceeecccCccceEEEEeC--C-ccccCHHHHHHHHHHHHHHHHHHHHhcchhheEEeCCcccCHHHHHHHHH
Confidence 988886665 455554 667776654 2 36799999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCceeeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEee-------C---CeEEEEEEeCCCC
Q 004211 160 AATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYE-------N---GHMKILSHAFDES 229 (768)
Q Consensus 160 Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~-------~---~~~~vl~~~~~~~ 229 (768)
||++||+++++||||.+|||+.||++++..+...+.+++|||||+|+|.++++.+. + ..++++++++|..
T Consensus 180 Aa~iagl~vLqLind~~a~Al~ygv~rRk~i~~~~q~~i~YDMGs~sT~Ativsy~~v~~k~~g~~~p~i~~~gvGfd~t 259 (902)
T KOG0104|consen 180 AAQIAGLNVLQLINDGTAVALNYGVFRRKEINETPQHYIFYDMGSGSTSATIVSYQLVKTKEQGGKQPQIQVLGVGFDRT 259 (902)
T ss_pred HHHhcCchhhhhhccchHHHhhhhhhccccCCCCceEEEEEecCCCceeEEEEEEEeeccccccCccceEEEEeeccCCc
Confidence 99999999999999999999999999887777899999999999999999999996 1 3799999999999
Q ss_pred CchhhHHHHHHHHHHHHHhhhccc--CccCChHHHHHHHHHHHHHhhhcCCCCeeeEEEeccccCcceEEEecHHHHHHH
Q 004211 230 LGGRDFDEVLSSYFAAQFKQQYDI--DVYTNVKASIRLRASCEKLKKVLSANAEAPLNIECLMNEKDVKGFIRREEFEKL 307 (768)
Q Consensus 230 lGG~~~d~~l~~~l~~~~~~~~~~--~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~~~i~~l~~~~d~~~~itr~~fe~~ 307 (768)
|||..|..+|.+||.+.|.++++. +++.|||+|+||.++|+++|..||+|.++.++|++|++|+||+.+|||++||++
T Consensus 260 LGG~e~~~rLr~~l~~~F~~~~k~~~dv~~nprAmaKl~keA~R~K~vLSANsea~aqIEsL~ddiDFr~kvTRe~fEel 339 (902)
T KOG0104|consen 260 LGGLEMTMRLRDHLANEFNEQHKTKKDVHTNPRAMAKLNKEAERLKQVLSANSEAFAQIESLIDDIDFRLKVTREEFEEL 339 (902)
T ss_pred cchHHHHHHHHHHHHHHHHHhcCCccccccCHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHhhccccccceeHHHHHHH
Confidence 999999999999999999998864 688999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEecCCCChHHHHHHHHhhcC-CCCCCcCCchhHHHhhHHHHhhHhcCCcc
Q 004211 308 SSSLLERMRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFN-REPGRTINASECVARGCALQCAMLSPQYC 386 (768)
Q Consensus 308 ~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~fg-~~v~~~~n~~eava~GAa~~a~~ls~~~~ 386 (768)
|.++..++..||.++|..++++.++|+.|+|+||+||+|.||+.|.++.| .++..++|+|||+++||+++||.||..|+
T Consensus 340 c~Dl~~r~~~Pi~dAl~~a~l~ldeIn~ViL~Gg~TRVP~VQe~l~k~v~~~ei~knlNaDEA~vmGav~~aA~LSksFK 419 (902)
T KOG0104|consen 340 CADLEERIVEPINDALKKAQLSLDEINQVILFGGATRVPKVQETLIKAVGKEELGKNLNADEAAVMGAVYQAAHLSKSFK 419 (902)
T ss_pred HHHHHHhhhhhHHHHHHhcCCChhhhheeEEecCcccCchHHHHHHHHHhHHHHhcccChhHHHHHHHHHHHHhhccccc
Confidence 99999999999999999999999999999999999999999999999998 78999999999999999999999999999
Q ss_pred ccceEEeeccceeeEEEecCCCc---ccceeEEEecCCCCCCceeEEEEee-cCceEEEEEEeccccCCCCCCCcceeEE
Q 004211 387 VREFEVQDSFPFSIGFSSEKGPI---CTFSNGVLLPKGQPFPSVKILTLHR-SNGFQLQAFYADQNELPSVVSPQISSFM 462 (768)
Q Consensus 387 ~~~~~~~d~~~~~i~i~~~~~~~---~~~~~~~l~~~~~~~p~~k~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~i~~~~ 462 (768)
+++|.+.|.++|+|.+++.+.+. ..+....+|++|.+||..+.++|+. +.+|.+.+.|+.- + ..+..|.
T Consensus 420 vKpf~V~D~~~yp~~v~f~~~~~i~~~k~~~~~lf~~~~~yPnk~vi~~~~ysddf~~~~n~~~~-----~--~nl~~ve 492 (902)
T KOG0104|consen 420 VKPFNVVDASVYPYLVEFETEPGIHALKSVKRDLFARMSPYPNKKVITFTSYSDDFPFNINYGDL-----G--QNLTTVE 492 (902)
T ss_pred ccceeeeecccccEEEEeccCCcccccchhHHHHHhcCCcCCCcceeeccccCCccccccchhhh-----c--cCccEEE
Confidence 99999999999999998876522 2234567999999999999999986 4568888877642 1 3455899
Q ss_pred ecCCCCC----C---CCcceEEEEEEEcCCccEEEEeeeeeeeeeeccccc------------cccc------cccc---
Q 004211 463 IGPFQTS----H---AETARVKVRVHLDLDGVVRVQSASLIEEFVDDSVRR------------ESRD------AHLT--- 514 (768)
Q Consensus 463 i~~~~~~----~---~~~~~i~v~~~~d~~Gil~v~~~~~~~~~~~~~~~~------------~~~~------~~~~--- 514 (768)
++|+..+ . .....|+++|.+|.+|++.|+.++++++...++... .+++ ..++
T Consensus 493 lsgV~d~~kk~~~~~~~~KGIk~~F~~D~Sgi~~v~~~evv~e~~~~~d~~~~~st~~K~~~~~e~e~~~~~~~~~e~ae 572 (902)
T KOG0104|consen 493 LSGVKDALKKNSYSDSESKGIKASFSLDLSGIVLVSRVEVVFEKQKEEDSGDKKSTLSKLGSTSEGEETSDDSVQEEDAE 572 (902)
T ss_pred EecchHHHHhcccchhhccCceEEEEEcCcCceEEeeeeEEEeccCCcccchhhhhhhccccccccccccccccchhhhh
Confidence 9998754 1 235689999999999999999999887642211100 0000 0000
Q ss_pred -c-----c-cccc----CCCC------CCCCCCccccccccc----ceeeeeeeecccCCCCCHHHHHHHHHHHHHHhhh
Q 004211 515 -L-----E-EDAK----SDHT------PATAIDPEINRKGKV----LKRLEIPVNENVNGGMTKTELSEAVEKEHQLVQQ 573 (768)
Q Consensus 515 -~-----~-~~~~----~~~~------~~~~~~~~~~~~k~~----~~~~~i~i~~~~~~~ls~~e~~~~~~~~~~~~~~ 573 (768)
. + +... ++++ +.+++..++..++.+ +...++..+...++.|+...+.....++..+.++
T Consensus 573 ~k~~ep~e~se~~ee~~~d~s~e~k~e~~t~e~~~~~~~~~~~~p~~~~~~i~~~~~~~~~l~~~~~~~~~~kl~d~~~~ 652 (902)
T KOG0104|consen 573 EKGLEPSERSELEEEAEEDASQEDKTEKETSEAQKPTEKKETPAPMVVRLQIQETYPDLPVLNENALDAAVAKLEDFVQK 652 (902)
T ss_pred hhccCccccccccccccccccccccccccchhccCcchhhcccCcceeEeeeeeecccccCCchhHHHHHHHHHHHHHHh
Confidence 0 0 0000 0000 000011111111111 1122233333334569999999999999999999
Q ss_pred hhhHHHHHHHHhhHHHHHHHHHHHHhh-HhhccCCHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHhHhHHH
Q 004211 574 DLKMERTKDRKNALESYVYEMRDKISN-IYRSFATESEREGISRNLRDTEEWLYEDGDDESENVYAERLEDLKKLVDPIE 652 (768)
Q Consensus 574 D~~~~~~~~akN~LEs~iy~~r~~l~~-~~~~~~t~~e~~~l~~~l~~~~~WL~~~g~~a~~~~~~~kl~~L~~~~~pi~ 652 (768)
|+.+.++++|.|.||+|+|++.++|++ .|..|++++|++.|.+.+..+.+||++++.+.++++|.+++.+|++++..+.
T Consensus 653 e~~k~~re~a~N~LE~~l~e~q~~l~d~ey~e~at~EEk~~L~~~~~~~~~Wleed~~~~~t~~~~ek~a~L~~l~~~~~ 732 (902)
T KOG0104|consen 653 EKEKSEREEASNELEAFLFELQDKLDDDEYAEVATEEEKKILKKKVSLLMDWLEEDGSQTPTEMLTEKLAELKKLETSKN 732 (902)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhcCchHhhhcCHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHhhhh
Confidence 999999999999999999999999985 7999999999999999999999999999999999999999999999999999
Q ss_pred HhhHhHHHHHHHHHHHHHHHHHHHHHHHhCC-----------CChhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcc
Q 004211 653 GRYKDEEARAQATGALLKCAMDYRKVVEAHS-----------LPSKVRDAVIDECSKAEEWLREKVTQQDSLPKDADPIL 721 (768)
Q Consensus 653 ~R~~e~~~rp~a~~~l~~~l~~~~~~~~~~~-----------~~~~e~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~ 721 (768)
.|.+++.++|+.++.+...|++..+++.... ++..++..|...++++..|+++....|.++++++||++
T Consensus 733 ~R~ee~kq~pe~l~~l~~~l~~s~~~l~~~~~~~~~~E~d~~ft~~e~~~L~k~i~~t~~W~~~~~~~~~k~~k~edp~~ 812 (902)
T KOG0104|consen 733 FREEERKQFPEELEALKNLLNRSFSFLKQARNLSTWEEKDTIFTKTEIDTLEKVIAKTTAWLNDRLDLFEKKAKTEDPVL 812 (902)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHhccccccccchhccchhhhhHHHHHHHHHHhHHHhhhhHHHHHhhhcccCccc
Confidence 9999999999999999999999999885321 56678899999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHhhhhc
Q 004211 722 WSTEIKRKSEALDLTCKCIM 741 (768)
Q Consensus 722 ~~~di~~k~~~l~~~~~~i~ 741 (768)
+++||..|++.|++++.+++
T Consensus 813 k~kei~~K~k~Ldrev~~~l 832 (902)
T KOG0104|consen 813 KVKEIEEKAKSLDREVLYLL 832 (902)
T ss_pred cHHHHHHHHHhhHHHHHHHH
Confidence 99999999999999887766
No 4
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=100.00 E-value=1.3e-102 Score=902.34 Aligned_cols=602 Identities=28% Similarity=0.521 Sum_probs=554.6
Q ss_pred CeEEEEEcCccceEEEEEEcCCceEEEeCCCCCccceEEEEeeCCceeecHHHHhhhhhCCcchHhHHHHhcCCCCCChH
Q 004211 1 MSVVGFDIGNENCVIAAVKQGGMLDVLLNDESKRETPTVVSFSEKQRFLGSAGAASAMMNPKSTISQVKRLLGRKFREDD 80 (768)
Q Consensus 1 m~viGID~GTt~s~va~~~~g~~~~ii~n~~~~r~~Ps~V~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~ 80 (768)
+.+||||||||||+||++.+|. ++++.|..|+|.+||+|+|.+++++||..|..+..++|.++++++||+||+.++++.
T Consensus 4 ~~~iGIDlGTt~s~va~~~~g~-~~ii~n~~g~r~tPS~V~f~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~ 82 (653)
T PTZ00009 4 GPAIGIDLGTTYSCVGVWKNEN-VEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVARNPENTVFDAKRLIGRKFDDSV 82 (653)
T ss_pred ccEEEEEeCcccEEEEEEeCCc-eEEEECCCCCccCCcEEEECCCCEEEcHHHHHhhhhCcccEEhhhHHHhCCCCCchh
Confidence 4699999999999999999887 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhccCCceeeecCCCCEEEEEEecCceeEecHHHHHHHHHHHHHHHHHhhccCCCCeEEEEeCCCCCHHHHHHHHHH
Q 004211 81 VQKDLKLFPFETCESHDGGILIMLEYLGETHKFTPVQILGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDVQRRAYLDA 160 (768)
Q Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~A 160 (768)
++...+.+||.++..++|...+.+.+.++...++|+++++++|++|++.|+.+++.++.++|||||+||++.||+++++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~~A 162 (653)
T PTZ00009 83 VQSDMKHWPFKVTTGGDDKPMIEVTYQGEKKTFHPEEISSMVLQKMKEIAEAYLGKQVKDAVVTVPAYFNDSQRQATKDA 162 (653)
T ss_pred HhhhhhcCceEEEEcCCCceEEEEEeCCceEEECHHHHHHHHHHHHHHHHHHHhCCCcceeEEEeCCCCCHHHHHHHHHH
Confidence 99999999999998888999999998887789999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCceeeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCCchhhHHHHHH
Q 004211 161 ATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEVLS 240 (768)
Q Consensus 161 a~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~d~~l~ 240 (768)
|++|||++++||+||+|||++|++.+.. ..+.++|||||||||||+||+++.++.++|+++.|+.++||++||..|+
T Consensus 163 a~~AGl~v~~li~EptAAAl~y~~~~~~---~~~~~vlv~D~GggT~dvsv~~~~~~~~~v~a~~gd~~lGG~d~D~~l~ 239 (653)
T PTZ00009 163 GTIAGLNVLRIINEPTAAAIAYGLDKKG---DGEKNVLIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDNRLV 239 (653)
T ss_pred HHHcCCceeEEecchHHHHHHHhhhccC---CCCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCCChHHHHHHHH
Confidence 9999999999999999999999986532 3467899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhc-ccCccCChHHHHHHHHHHHHHhhhcCCCCeeeEEEeccccCcceEEEecHHHHHHHHHHHHHHHHHHH
Q 004211 241 SYFAAQFKQQY-DIDVYTNVKASIRLRASCEKLKKVLSANAEAPLNIECLMNEKDVKGFIRREEFEKLSSSLLERMRIPC 319 (768)
Q Consensus 241 ~~l~~~~~~~~-~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~~~i~~l~~~~d~~~~itr~~fe~~~~~~~~~i~~~i 319 (768)
+|+.++|..++ +.++..+++++.||+.+||++|+.||.+.++.+.+++++++.++++.|||++|+++|+++++++..+|
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~aEkaK~~LS~~~~~~i~i~~~~~~~d~~~~itR~~fe~l~~~l~~~~~~~i 319 (653)
T PTZ00009 240 EFCVQDFKRKNRGKDLSSNQRALRRLRTQCERAKRTLSSSTQATIEIDSLFEGIDYNVTISRARFEELCGDYFRNTLQPV 319 (653)
T ss_pred HHHHHHHHHhccCCCCccCHHHHHHHHHHHHHHHHhCCCCceEEEEEEeccCCceEEEEECHHHHHHHHHHHHHHHHHHH
Confidence 99999998877 47788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCCCcCEEEEecCCCChHHHHHHHHhhcC-CCCCCcCCchhHHHhhHHHHhhHhcCC--ccccceEEeecc
Q 004211 320 QKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFN-REPGRTINASECVARGCALQCAMLSPQ--YCVREFEVQDSF 396 (768)
Q Consensus 320 ~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~fg-~~v~~~~n~~eava~GAa~~a~~ls~~--~~~~~~~~~d~~ 396 (768)
+++|+.+++...+|+.|+||||+||+|+|+++|+++|| ..+..++|||+|||+|||++|+++++. ++++++.+.|++
T Consensus 320 ~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~i~~~f~~~~~~~~~npdeaVA~GAa~~aa~ls~~~~~~~~~~~~~dv~ 399 (653)
T PTZ00009 320 EKVLKDAGMDKRSVHEVVLVGGSTRIPKVQSLIKDFFNGKEPCKSINPDEAVAYGAAVQAAILTGEQSSQVQDLLLLDVT 399 (653)
T ss_pred HHHHHHcCCCHHHCcEEEEECCCCCChhHHHHHHHHhCCCCCCCCCCcchHHhhhhhhhHHHhcCCccccccceEEEeec
Confidence 99999999999999999999999999999999999996 678899999999999999999999975 788999999999
Q ss_pred ceeeEEEecCCCcccceeEEEecCCCCCCceeEEEEeecC----ceEEEEEEeccccCCCCCCCcceeEEecCCCCCCCC
Q 004211 397 PFSIGFSSEKGPICTFSNGVLLPKGQPFPSVKILTLHRSN----GFQLQAFYADQNELPSVVSPQISSFMIGPFQTSHAE 472 (768)
Q Consensus 397 ~~~i~i~~~~~~~~~~~~~~l~~~~~~~p~~k~~~~~~~~----~~~i~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~ 472 (768)
||+||++..++ .+.+||++|+++|++++.+|++.. .+.|.+++++. ....+|..||+|.|.++++.+.|
T Consensus 400 p~slgi~~~~~-----~~~~ii~~~t~iP~~~~~~f~t~~d~q~~~~i~i~ege~--~~~~~n~~lg~~~i~~i~~~~~g 472 (653)
T PTZ00009 400 PLSLGLETAGG-----VMTKLIERNTTIPTKKSQIFTTYADNQPGVLIQVFEGER--AMTKDNNLLGKFHLDGIPPAPRG 472 (653)
T ss_pred ccccCccccCC-----ceEEEEeCCCcCCccceeEeEeecCCCceEEEEEEeccc--ccCCCCceEEEEEEcCCCCCCCC
Confidence 99999988766 788999999999999999997533 27788876543 33478899999999999998888
Q ss_pred cceEEEEEEEcCCccEEEEeeeeeeeeeecccccccccccccccccccCCCCCCCCCCcccccccccceeeeeeeecccC
Q 004211 473 TARVKVRVHLDLDGVVRVQSASLIEEFVDDSVRRESRDAHLTLEEDAKSDHTPATAIDPEINRKGKVLKRLEIPVNENVN 552 (768)
Q Consensus 473 ~~~i~v~~~~d~~Gil~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~i~~~~~ 552 (768)
.+.|+|+|++|.+|+|+|++.+ +.+.+...++|....
T Consensus 473 ~~~i~v~f~id~~Gil~v~~~~------------------------------------------~~t~~~~~~~i~~~~- 509 (653)
T PTZ00009 473 VPQIEVTFDIDANGILNVSAED------------------------------------------KSTGKSNKITITNDK- 509 (653)
T ss_pred CceEEEEEEECCCCeEEEEEec------------------------------------------ccCCceeeEEEeecc-
Confidence 8899999999999999998752 112233445555433
Q ss_pred CCCCHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHHHHHHHhh-HhhccCCHHHHHHHHHHHHHHHHHHhhcCCC
Q 004211 553 GGMTKTELSEAVEKEHQLVQQDLKMERTKDRKNALESYVYEMRDKISN-IYRSFATESEREGISRNLRDTEEWLYEDGDD 631 (768)
Q Consensus 553 ~~ls~~e~~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~-~~~~~~t~~e~~~l~~~l~~~~~WL~~~g~~ 631 (768)
.+|+.++++++++.+.+|..+|+..+++.+++|+||+|||++|++|++ .|..++++++|++|.+.|+++++|||+ +++
T Consensus 510 ~~ls~~~i~~~~~~~~~~~~~d~~~~~~~eakN~lEs~Iy~~r~~L~~~~~~~~~t~ee~~~l~~~l~~~~~wL~~-~~~ 588 (653)
T PTZ00009 510 GRLSKADIDRMVNEAEKYKAEDEANRERVEAKNGLENYCYSMKNTLQDEKVKGKLSDSDKATIEKAIDEALEWLEK-NQL 588 (653)
T ss_pred ccccHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhccCCHHHHHHHHHHHHHHHHHHhc-CCc
Confidence 579999999999999999999999999999999999999999999974 589999999999999999999999995 578
Q ss_pred ccHHHHHHHHHHHHHhHhHHHHhhHh
Q 004211 632 ESENVYAERLEDLKKLVDPIEGRYKD 657 (768)
Q Consensus 632 a~~~~~~~kl~~L~~~~~pi~~R~~e 657 (768)
++.++|++|+++|+++++||..|+..
T Consensus 589 ~~~~~~~~kl~eL~~~~~pi~~r~~~ 614 (653)
T PTZ00009 589 AEKEEFEHKQKEVESVCNPIMTKMYQ 614 (653)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999753
No 5
>PRK13410 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=6.9e-102 Score=891.62 Aligned_cols=609 Identities=25% Similarity=0.448 Sum_probs=549.3
Q ss_pred eEEEEEcCccceEEEEEEcCCceEEEeCCCCCccceEEEEeeC-CceeecHHHHhhhhhCCcchHhHHHHhcCCCCCChH
Q 004211 2 SVVGFDIGNENCVIAAVKQGGMLDVLLNDESKRETPTVVSFSE-KQRFLGSAGAASAMMNPKSTISQVKRLLGRKFREDD 80 (768)
Q Consensus 2 ~viGID~GTt~s~va~~~~g~~~~ii~n~~~~r~~Ps~V~~~~-~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~ 80 (768)
.|||||||||||+||++.+|. +.++.|..|+|.+||+|+|.. +++++|..|..++..+|.++++++||+||+.+.+
T Consensus 3 ~viGIDlGTt~s~va~~~~g~-~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KRliG~~~~~-- 79 (668)
T PRK13410 3 RIVGIDLGTTNSVVAVMEGGK-PVVIANAEGMRTTPSVVGFTKDGELLVGQLARRQLVLNPQNTFYNLKRFIGRRYDE-- 79 (668)
T ss_pred cEEEEEeCCCcEEEEEEECCe-EEEEECCCCCccCceEEEEeCCCCEEECHHHHHhhHhCccceehHHhhhhCCCchh--
Confidence 389999999999999999988 888899999999999999974 6799999999999999999999999999999865
Q ss_pred HHhhhccCCceeeecCCCCEEEEEEecCceeEecHHHHHHHHHHHHHHHHHhhccCCCCeEEEEeCCCCCHHHHHHHHHH
Q 004211 81 VQKDLKLFPFETCESHDGGILIMLEYLGETHKFTPVQILGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDVQRRAYLDA 160 (768)
Q Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~A 160 (768)
++...+.+||.+...++|.+.+.+...+ +.++|+++++++|++|++.++.++|.++.++|||||+||++.||+++++|
T Consensus 80 ~~~~~~~~~~~v~~~~~g~~~i~~~~~~--~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~A 157 (668)
T PRK13410 80 LDPESKRVPYTIRRNEQGNVRIKCPRLE--REFAPEELSAMILRKLADDASRYLGEPVTGAVITVPAYFNDSQRQATRDA 157 (668)
T ss_pred hHHhhccCCeEEEECCCCcEEEEEecCC--eEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHH
Confidence 5556778999999988899888765443 68999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCceeeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCCchhhHHHHHH
Q 004211 161 ATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEVLS 240 (768)
Q Consensus 161 a~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~d~~l~ 240 (768)
|++|||+++++|+||+|||++|++.+ ..+.++|||||||||||+|++++.++.++|+++.|+.++||++||..|+
T Consensus 158 a~~AGl~v~~li~EPtAAAlayg~~~-----~~~~~vlV~DlGgGT~Dvsv~~~~~g~~~V~at~gd~~lGG~dfD~~l~ 232 (668)
T PRK13410 158 GRIAGLEVERILNEPTAAALAYGLDR-----SSSQTVLVFDLGGGTFDVSLLEVGNGVFEVKATSGDTQLGGNDFDKRIV 232 (668)
T ss_pred HHHcCCCeEEEecchHHHHHHhcccc-----CCCCEEEEEECCCCeEEEEEEEEcCCeEEEEEeecCCCCChhHHHHHHH
Confidence 99999999999999999999999865 3467999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcccCccCChHHHHHHHHHHHHHhhhcCCCCeeeEEEeccccC----cceEEEecHHHHHHHHHHHHHHHH
Q 004211 241 SYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANAEAPLNIECLMNE----KDVKGFIRREEFEKLSSSLLERMR 316 (768)
Q Consensus 241 ~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~~~i~~l~~~----~d~~~~itr~~fe~~~~~~~~~i~ 316 (768)
+|+..+|..+++.++..+++++.+|+.+||++|+.||.+..+.+.+++++.+ .++...|||++|+++|.++++++.
T Consensus 233 ~~l~~~f~~~~~~d~~~~~~a~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~FE~l~~~l~~r~~ 312 (668)
T PRK13410 233 DWLAEQFLEKEGIDLRRDRQALQRLTEAAEKAKIELSGVSVTDISLPFITATEDGPKHIETRLDRKQFESLCGDLLDRLL 312 (668)
T ss_pred HHHHHHHHhhhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeecCCCCCeeEEEEECHHHHHHHHHHHHHHHH
Confidence 9999999999999998899999999999999999999999999999887643 368889999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCcCEEEEecCCCChHHHHHHHHhhcCCCCCCcCCchhHHHhhHHHHhhHhcCCccccceEEeecc
Q 004211 317 IPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQCAMLSPQYCVREFEVQDSF 396 (768)
Q Consensus 317 ~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~GAa~~a~~ls~~~~~~~~~~~d~~ 396 (768)
.+|+++|+.+++.+.+|+.|+||||+||||+|+++|+++||.++..++||++|||+|||++|+++++. ++++.+.|++
T Consensus 313 ~~i~~~L~~ag~~~~dId~VvLVGGssRiP~V~~~l~~~fg~~~~~~~npdeaVA~GAAi~aa~ls~~--~~~~~l~Dv~ 390 (668)
T PRK13410 313 RPVKRALKDAGLSPEDIDEVVLVGGSTRMPMVQQLVRTLIPREPNQNVNPDEVVAVGAAIQAGILAGE--LKDLLLLDVT 390 (668)
T ss_pred HHHHHHHHHcCCChhhCcEEEEECCccccHHHHHHHHHHcCCCcccCCCCchHHHHhHHHHHHhhccc--ccceeEEeec
Confidence 99999999999999999999999999999999999999999888999999999999999999999984 6789999999
Q ss_pred ceeeEEEecCCCcccceeEEEecCCCCCCceeEEEEeec--CceEEEEEEeccccCCCCCCCcceeEEecCCCCCCCCcc
Q 004211 397 PFSIGFSSEKGPICTFSNGVLLPKGQPFPSVKILTLHRS--NGFQLQAFYADQNELPSVVSPQISSFMIGPFQTSHAETA 474 (768)
Q Consensus 397 ~~~i~i~~~~~~~~~~~~~~l~~~~~~~p~~k~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~ 474 (768)
||+||+++.++ .+.+|||+|+++|++++.+|.+. ++..+.+.+..++.....+|..||+|.|+++++++.|.+
T Consensus 391 p~slgie~~~g-----~~~~li~rnt~iP~~~~~~f~t~~dnq~~v~i~v~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~ 465 (668)
T PRK13410 391 PLSLGLETIGG-----VMKKLIPRNTTIPVRRSDVFSTSENNQSSVEIHVWQGEREMASDNKSLGRFKLSGIPPAPRGVP 465 (668)
T ss_pred cccccceecCC-----eeEEEEeCCCcccccccccceeccCCCcEEEEEEEeeccccccCCceEEEEEEeCCCCCCCCCC
Confidence 99999999876 78999999999999999999864 344555443344444568899999999999999988989
Q ss_pred eEEEEEEEcCCccEEEEeeeeeeeeeecccccccccccccccccccCCCCCCCCCCcccccccccceeeeeeeecccCCC
Q 004211 475 RVKVRVHLDLDGVVRVQSASLIEEFVDDSVRRESRDAHLTLEEDAKSDHTPATAIDPEINRKGKVLKRLEIPVNENVNGG 554 (768)
Q Consensus 475 ~i~v~~~~d~~Gil~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~i~~~~~~~ 554 (768)
+|+|+|++|.||+|+|++.+ +.++++..++|... .+
T Consensus 466 ~I~v~f~id~nGiL~V~a~d------------------------------------------~~tg~~~~~~i~~~--~~ 501 (668)
T PRK13410 466 QVQVAFDIDANGILQVSATD------------------------------------------RTTGREQSVTIQGA--ST 501 (668)
T ss_pred eEEEEEEECCCcEEEEEEEE------------------------------------------cCCCceeeeeeccc--cc
Confidence 99999999999999999853 12223344555543 47
Q ss_pred CCHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHHHHHHHhh---HhhccCCHHHHHHHHHHHHHHHHHHhhcCCC
Q 004211 555 MTKTELSEAVEKEHQLVQQDLKMERTKDRKNALESYVYEMRDKISN---IYRSFATESEREGISRNLRDTEEWLYEDGDD 631 (768)
Q Consensus 555 ls~~e~~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~---~~~~~~t~~e~~~l~~~l~~~~~WL~~~g~~ 631 (768)
|+.++++++++++.+|..+|+.++++.++||+||+|||.+|++|.+ .|..++++++|+++...|+++++|||+++.+
T Consensus 502 ls~~ei~~~~~~~~~~~~~d~~~~~~~e~kn~~e~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~wL~~~~~~ 581 (668)
T PRK13410 502 LSEQEVNRMIQEAEAKADEDRRRRERIEKRNRALTLIAQAERRLRDAALEFGPYFAERQRRAVESAMRDVQDSLEQDDDR 581 (668)
T ss_pred CCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 9999999999999999999999999999999999999999999975 5889999999999999999999999999888
Q ss_pred ccHHHHHHHHHHHHHhHhHHHHhhHhHHHHHHHHHHHHHHHH
Q 004211 632 ESENVYAERLEDLKKLVDPIEGRYKDEEARAQATGALLKCAM 673 (768)
Q Consensus 632 a~~~~~~~kl~~L~~~~~pi~~R~~e~~~rp~a~~~l~~~l~ 673 (768)
...+.|.++++.|+.+..||..|+.| .-..-+..+++.+.
T Consensus 582 ~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 621 (668)
T PRK13410 582 ELDLAVADLQEALYGLNREVRAEYKE--EDEGPLQGIKNTFG 621 (668)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh--cccchhhhHHhhcc
Confidence 99999999999999999999999999 22233344444443
No 6
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=100.00 E-value=1.9e-99 Score=874.74 Aligned_cols=586 Identities=26% Similarity=0.479 Sum_probs=538.3
Q ss_pred eEEEEEcCccceEEEEEEcCCceEEEeCCCCCccceEEEEeeC-CceeecHHHHhhhhhCCcchHhHHHHhcCCCCCChH
Q 004211 2 SVVGFDIGNENCVIAAVKQGGMLDVLLNDESKRETPTVVSFSE-KQRFLGSAGAASAMMNPKSTISQVKRLLGRKFREDD 80 (768)
Q Consensus 2 ~viGID~GTt~s~va~~~~g~~~~ii~n~~~~r~~Ps~V~~~~-~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~ 80 (768)
++||||||||||+||++.+|. ++++.|..|+|.+||+|+|.+ +++++|..|..+..++|.++++++|||||+.++++.
T Consensus 42 ~viGIDlGTt~s~va~~~~~~-~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~ 120 (663)
T PTZ00400 42 DIVGIDLGTTNSCVAIMEGSQ-PKVIENSEGMRTTPSVVAFTEDGQRLVGIVAKRQAVTNPENTVFATKRLIGRRYDEDA 120 (663)
T ss_pred cEEEEEECcccEEEEEEeCCe-eEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhHHhCCcceehhhhhhcCCCcCcHH
Confidence 589999999999999998776 999999999999999999975 579999999999999999999999999999999999
Q ss_pred HHhhhccCCceeeecCCCCEEEEEEecCceeEecHHHHHHHHHHHHHHHHHhhccCCCCeEEEEeCCCCCHHHHHHHHHH
Q 004211 81 VQKDLKLFPFETCESHDGGILIMLEYLGETHKFTPVQILGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDVQRRAYLDA 160 (768)
Q Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~A 160 (768)
++...+.+||.++..++|.+.+.+. ...++|+++++++|++|++.|+.++|.++.++|||||+||++.||+++++|
T Consensus 121 ~~~~~~~~p~~~~~~~~~~~~~~~~----~~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~A 196 (663)
T PTZ00400 121 TKKEQKILPYKIVRASNGDAWIEAQ----GKKYSPSQIGAFVLEKMKETAESYLGRKVKQAVITVPAYFNDSQRQATKDA 196 (663)
T ss_pred HHhhhccCCeEEEecCCCceEEEEC----CEEECHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHHHH
Confidence 9999999999999988888877653 357999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCceeeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCCchhhHHHHHH
Q 004211 161 ATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEVLS 240 (768)
Q Consensus 161 a~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~d~~l~ 240 (768)
|++|||++++||+||+|||++|+... ..+.++|||||||||||+||+++.++.++|+++.|+.++||++||..|+
T Consensus 197 a~~AGl~v~~li~EptAAAlay~~~~-----~~~~~vlV~DlGgGT~DvSv~~~~~g~~~v~a~~gd~~LGG~d~D~~l~ 271 (663)
T PTZ00400 197 GKIAGLDVLRIINEPTAAALAFGMDK-----NDGKTIAVYDLGGGTFDISILEILGGVFEVKATNGNTSLGGEDFDQRIL 271 (663)
T ss_pred HHHcCCceEEEeCchHHHHHHhcccc-----CCCcEEEEEeCCCCeEEEEEEEecCCeeEEEecccCCCcCHHHHHHHHH
Confidence 99999999999999999999999764 3468999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcccCccCChHHHHHHHHHHHHHhhhcCCCCeeeEEEeccccC----cceEEEecHHHHHHHHHHHHHHHH
Q 004211 241 SYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANAEAPLNIECLMNE----KDVKGFIRREEFEKLSSSLLERMR 316 (768)
Q Consensus 241 ~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~~~i~~l~~~----~d~~~~itr~~fe~~~~~~~~~i~ 316 (768)
+|+..+|..+++.++..+++++.+|+.+||++|+.||.+.++.+.+++++.+ .++.+.|||++|+++|+|+++++.
T Consensus 272 ~~l~~~f~~~~~~~~~~~~~a~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~efe~l~~~l~~~~~ 351 (663)
T PTZ00400 272 NYLIAEFKKQQGIDLKKDKLALQRLREAAETAKIELSSKTQTEINLPFITADQSGPKHLQIKLSRAKLEELTHDLLKKTI 351 (663)
T ss_pred HHHHHHhhhhcCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEEEeeccCCCCceEEEEEECHHHHHHHHHHHHHHHH
Confidence 9999999999998898999999999999999999999999999999877654 478999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCcCEEEEecCCCChHHHHHHHHhhcCCCCCCcCCchhHHHhhHHHHhhHhcCCccccceEEeecc
Q 004211 317 IPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQCAMLSPQYCVREFEVQDSF 396 (768)
Q Consensus 317 ~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~GAa~~a~~ls~~~~~~~~~~~d~~ 396 (768)
.+++++|+++++.+.+|+.|+||||+||+|+|+++|+++||.++..++||+++||+|||++|+++++. ++++.+.|++
T Consensus 352 ~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~f~~~~~~~~npdeaVA~GAAi~aa~l~~~--~~~~~~~dv~ 429 (663)
T PTZ00400 352 EPCEKCIKDAGVKKDELNDVILVGGMTRMPKVSETVKKIFGKEPSKGVNPDEAVAMGAAIQAGVLKGE--IKDLLLLDVT 429 (663)
T ss_pred HHHHHHHHHcCCCHHHCcEEEEECCccCChHHHHHHHHHhCCCcccCCCCccceeeccHHHHHhhcCC--ccceEEEecc
Confidence 99999999999999999999999999999999999999999888899999999999999999999885 5789999999
Q ss_pred ceeeEEEecCCCcccceeEEEecCCCCCCceeEEEEeecCc----eEEEEEEeccccCCCCCCCcceeEEecCCCCCCCC
Q 004211 397 PFSIGFSSEKGPICTFSNGVLLPKGQPFPSVKILTLHRSNG----FQLQAFYADQNELPSVVSPQISSFMIGPFQTSHAE 472 (768)
Q Consensus 397 ~~~i~i~~~~~~~~~~~~~~l~~~~~~~p~~k~~~~~~~~~----~~i~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~ 472 (768)
||+||+++.++ .+.+|||+|+++|++++.+|.+..+ +.|.+++++. ....+|..||+|.|.++++++.|
T Consensus 430 p~slgi~~~~g-----~~~~ii~~~t~iP~~~~~~f~~~~d~q~~~~i~i~ege~--~~~~~n~~lg~~~i~~i~~~~~g 502 (663)
T PTZ00400 430 PLSLGIETLGG-----VFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVFQGER--EMAADNKLLGQFDLVGIPPAPRG 502 (663)
T ss_pred ccceEEEecCC-----eeEEEEecCccCCccceeeeeeccCCCceEEEEEEEecC--ccCCcCceeEEEEEcCCCCCCCC
Confidence 99999999877 7899999999999999999987533 6677766543 33478899999999999998888
Q ss_pred cceEEEEEEEcCCccEEEEeeeeeeeeeecccccccccccccccccccCCCCCCCCCCcccccccccceeeeeeeecccC
Q 004211 473 TARVKVRVHLDLDGVVRVQSASLIEEFVDDSVRRESRDAHLTLEEDAKSDHTPATAIDPEINRKGKVLKRLEIPVNENVN 552 (768)
Q Consensus 473 ~~~i~v~~~~d~~Gil~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~i~~~~~ 552 (768)
.+.|+|+|.+|.+|+|+|++.+ +.++++..++|+..
T Consensus 503 ~~~i~v~f~id~~Gil~v~a~~------------------------------------------~~~~~~~~~~i~~~-- 538 (663)
T PTZ00400 503 VPQIEVTFDVDANGIMNISAVD------------------------------------------KSTGKKQEITIQSS-- 538 (663)
T ss_pred CceEEEEEEECCCCCEEEEEEe------------------------------------------ccCCcEEEEEeecc--
Confidence 8899999999999999998862 22334455666544
Q ss_pred CCCCHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHHHHHHHhhHhhccCCHHHHHHHHHHHHHHHHHHhhcCCCc
Q 004211 553 GGMTKTELSEAVEKEHQLVQQDLKMERTKDRKNALESYVYEMRDKISNIYRSFATESEREGISRNLRDTEEWLYEDGDDE 632 (768)
Q Consensus 553 ~~ls~~e~~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~t~~e~~~l~~~l~~~~~WL~~~g~~a 632 (768)
.+||.++++++.+++.+|..+|+..+++.++||+||+|||.+|++|.+ +..++++++|+.+.+.++++++|||++
T Consensus 539 ~~ls~~ei~~~~~~~~~~~~~D~~~~~~~eakN~lEs~iy~~r~~l~e-~~~~~s~~ere~i~~~l~~~~~WL~~~---- 613 (663)
T PTZ00400 539 GGLSDEEIEKMVKEAEEYKEQDEKKKELVDAKNEAETLIYSVEKQLSD-LKDKISDADKDELKQKITKLRSTLSSE---- 613 (663)
T ss_pred ccccHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhCCHHHHHHHHHHHHHHHHHHhcC----
Confidence 469999999999999999999999999999999999999999999976 889999999999999999999999975
Q ss_pred cHHHHHHHHHHHHHhHhHHHHhh
Q 004211 633 SENVYAERLEDLKKLVDPIEGRY 655 (768)
Q Consensus 633 ~~~~~~~kl~~L~~~~~pi~~R~ 655 (768)
+.++|++++++|++++.++..++
T Consensus 614 d~~~i~~k~~eL~~~l~~l~~k~ 636 (663)
T PTZ00400 614 DVDSIKDKTKQLQEASWKISQQA 636 (663)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999998754
No 7
>PRK13411 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=3.3e-99 Score=872.65 Aligned_cols=591 Identities=25% Similarity=0.457 Sum_probs=535.0
Q ss_pred eEEEEEcCccceEEEEEEcCCceEEEeCCCCCccceEEEEeeC-CceeecHHHHhhhhhCCcchHhHHHHhcCCCCCChH
Q 004211 2 SVVGFDIGNENCVIAAVKQGGMLDVLLNDESKRETPTVVSFSE-KQRFLGSAGAASAMMNPKSTISQVKRLLGRKFREDD 80 (768)
Q Consensus 2 ~viGID~GTt~s~va~~~~g~~~~ii~n~~~~r~~Ps~V~~~~-~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~ 80 (768)
.+||||||||||+||++.+|. +.++.|..|+|.+||+|+|.+ ++++||..|..+..++|.++++++|||||+.+.++.
T Consensus 3 ~viGIDlGTt~s~va~~~~g~-~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~ 81 (653)
T PRK13411 3 KVIGIDLGTTNSCVAVLEGGK-PIVIPNSEGGRTTPSIVGFGKSGDRLVGQLAKRQAVTNAENTVYSIKRFIGRRWDDTE 81 (653)
T ss_pred cEEEEEeCcccEEEEEEECCE-EEEEECCCCCccCceEEEEeCCCCEEEcHHHHHhhhhCcccchHHHHHHhCCCccchh
Confidence 389999999999999999998 789999999999999999975 589999999999999999999999999999998864
Q ss_pred HHhhhccCCceeeecCCCCEEEEEEecCceeEecHHHHHHHHHHHHHHHHHhhccCCCCeEEEEeCCCCCHHHHHHHHHH
Q 004211 81 VQKDLKLFPFETCESHDGGILIMLEYLGETHKFTPVQILGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDVQRRAYLDA 160 (768)
Q Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~A 160 (768)
.+.+++||.++...+|.+.+.+. ...++|+++++++|++|++.|+.++|.++.++|||||+||++.||+++++|
T Consensus 82 --~~~~~~~~~~v~~~~~~~~~~i~----~~~~~peei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~A 155 (653)
T PRK13411 82 --EERSRVPYTCVKGRDDTVNVQIR----GRNYTPQEISAMILQKLKQDAEAYLGEPVTQAVITVPAYFTDAQRQATKDA 155 (653)
T ss_pred --HHhhcCCceEEecCCCceEEEEC----CEEECHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCcHHHHHHHHH
Confidence 45678999999888888777653 357999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCceeeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCCchhhHHHHHH
Q 004211 161 ATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEVLS 240 (768)
Q Consensus 161 a~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~d~~l~ 240 (768)
|++|||++++|++||+|||++|++.+. ..+.++|||||||||||+|++++.++.++|+++.|+.++||++||..|+
T Consensus 156 a~~AGl~v~~li~EPtAAAl~y~~~~~----~~~~~vlV~DlGgGT~dvsi~~~~~~~~~V~at~gd~~LGG~dfD~~l~ 231 (653)
T PRK13411 156 GTIAGLEVLRIINEPTAAALAYGLDKQ----DQEQLILVFDLGGGTFDVSILQLGDGVFEVKATAGNNHLGGDDFDNCIV 231 (653)
T ss_pred HHHcCCCeEEEecchHHHHHHhccccc----CCCCEEEEEEcCCCeEEEEEEEEeCCEEEEEEEecCCCcCHHHHHHHHH
Confidence 999999999999999999999998653 3467899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcccCccCChHHHHHHHHHHHHHhhhcCCCCeeeEEEeccccC----cceEEEecHHHHHHHHHHHHHHHH
Q 004211 241 SYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANAEAPLNIECLMNE----KDVKGFIRREEFEKLSSSLLERMR 316 (768)
Q Consensus 241 ~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~~~i~~l~~~----~d~~~~itr~~fe~~~~~~~~~i~ 316 (768)
+|+.++|..+++.++..+++++.||+.+||++|+.||.+..+.+.+++++.+ .++.+.|||++|+++|.|+++++.
T Consensus 232 ~~l~~~f~~~~~~d~~~~~~~~~rL~~~aE~aK~~LS~~~~~~i~i~~~~~d~~~~~~~~~~itR~~fe~l~~~l~~~~~ 311 (653)
T PRK13411 232 DWLVENFQQQEGIDLSQDKMALQRLREAAEKAKIELSSMLTTSINLPFITADETGPKHLEMELTRAKFEELTKDLVEATI 311 (653)
T ss_pred HHHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeccCCCCCeeEEEEEcHHHHHHHHHHHHHHHH
Confidence 9999999998888999999999999999999999999999999999887543 478899999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCcCEEEEecCCCChHHHHHHHHhhcC-CCCCCcCCchhHHHhhHHHHhhHhcCCccccceEEeec
Q 004211 317 IPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFN-REPGRTINASECVARGCALQCAMLSPQYCVREFEVQDS 395 (768)
Q Consensus 317 ~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~fg-~~v~~~~n~~eava~GAa~~a~~ls~~~~~~~~~~~d~ 395 (768)
.+|+++|+++++.+.+|+.|+||||+||+|+|++.|+++|| ..+..++||++|||+|||++|+++++. ++++.+.|+
T Consensus 312 ~~i~~~L~~a~~~~~~id~ViLvGGssriP~v~~~l~~~f~~~~~~~~~npdeaVA~GAAi~aa~l~~~--~~~~~~~dv 389 (653)
T PRK13411 312 EPMQQALKDAGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGGKQPDRSVNPDEAVALGAAIQAGVLGGE--VKDLLLLDV 389 (653)
T ss_pred HHHHHHHHHcCCCHHHCcEEEEECCCCCcchHHHHHHHHcCCcCcCCCCCchHHHHHHHHHHHHhhcCC--ccceeeeec
Confidence 99999999999999999999999999999999999999996 678889999999999999999999986 678999999
Q ss_pred cceeeEEEecCCCcccceeEEEecCCCCCCceeEEEEee--cCceEEEEEEeccccCCCCCCCcceeEEecCCCCCCCCc
Q 004211 396 FPFSIGFSSEKGPICTFSNGVLLPKGQPFPSVKILTLHR--SNGFQLQAFYADQNELPSVVSPQISSFMIGPFQTSHAET 473 (768)
Q Consensus 396 ~~~~i~i~~~~~~~~~~~~~~l~~~~~~~p~~k~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~ 473 (768)
+|++||+++.++ .+.+||++|+++|++++.+|.+ +++..+.+.+..+++....+|..||+|.+.++++++.|.
T Consensus 390 ~p~slgi~~~~~-----~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~ 464 (653)
T PRK13411 390 TPLSLGIETLGE-----VFTKIIERNTTIPTSKSQVFSTATDGQTSVEIHVLQGERAMAKDNKSLGKFLLTGIPPAPRGV 464 (653)
T ss_pred ccceeeEEecCC-----ceEEEEECCCcccceeeEEEEeccCCCeEEEEEEEEecCcccccCceeeEEEEcCCCCCCCCC
Confidence 999999999876 7899999999999999999986 444444443333444455789999999999999988888
Q ss_pred ceEEEEEEEcCCccEEEEeeeeeeeeeecccccccccccccccccccCCCCCCCCCCcccccccccceeeeeeeecccCC
Q 004211 474 ARVKVRVHLDLDGVVRVQSASLIEEFVDDSVRRESRDAHLTLEEDAKSDHTPATAIDPEINRKGKVLKRLEIPVNENVNG 553 (768)
Q Consensus 474 ~~i~v~~~~d~~Gil~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~i~~~~~~ 553 (768)
++|+|+|.+|.+|+|+|++.+ ..++++..+.+... .
T Consensus 465 ~~i~v~f~id~~Gil~v~a~d------------------------------------------~~t~~~~~~~i~~~--~ 500 (653)
T PRK13411 465 PQIEVSFEIDVNGILKVSAQD------------------------------------------QGTGREQSIRITNT--G 500 (653)
T ss_pred ccEEEEEEECCCCeEEEEEee------------------------------------------ccCCceEeeEEecc--c
Confidence 899999999999999999852 11222334555543 4
Q ss_pred CCCHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHHHHHHHhhHhhccCCHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 004211 554 GMTKTELSEAVEKEHQLVQQDLKMERTKDRKNALESYVYEMRDKISNIYRSFATESEREGISRNLRDTEEWLYEDGDDES 633 (768)
Q Consensus 554 ~ls~~e~~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~t~~e~~~l~~~l~~~~~WL~~~g~~a~ 633 (768)
+||.++++++++++.+|..+|+.++++.++||+||+|||.+|++|++ +..++++++|+++...|+++++||+++ +++
T Consensus 501 ~ls~~ei~~~~~~~~~~~~~D~~~~~~~eakN~lEs~iy~~r~~l~~-~~~~~~~~er~~i~~~l~~~~~wL~~~--~~~ 577 (653)
T PRK13411 501 GLSSNEIERMRQEAEKYAEEDRRRKQLIELKNQADSLLYSYESTLKE-NGELISEELKQRAEQKVEQLEAALTDP--NIS 577 (653)
T ss_pred cchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH-hhccCCHHHHHHHHHHHHHHHHHHhcC--CCC
Confidence 69999999999999999999999999999999999999999999975 688999999999999999999999983 568
Q ss_pred HHHHHHHHHHHHHhHhHHHHhhHh
Q 004211 634 ENVYAERLEDLKKLVDPIEGRYKD 657 (768)
Q Consensus 634 ~~~~~~kl~~L~~~~~pi~~R~~e 657 (768)
.++|++++++|++.+.|+..++..
T Consensus 578 ~~~~~~~~~el~~~~~~i~~~~y~ 601 (653)
T PRK13411 578 LEELKQQLEEFQQALLAIGAEVYQ 601 (653)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 899999999999999999987643
No 8
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=100.00 E-value=7.5e-98 Score=863.40 Aligned_cols=587 Identities=28% Similarity=0.511 Sum_probs=536.8
Q ss_pred Ce-EEEEEcCccceEEEEEEcCCceEEEeCCCCCccceEEEEee-CCceeecHHHHhhhhhCCcchHhHHHHhcCCCCCC
Q 004211 1 MS-VVGFDIGNENCVIAAVKQGGMLDVLLNDESKRETPTVVSFS-EKQRFLGSAGAASAMMNPKSTISQVKRLLGRKFRE 78 (768)
Q Consensus 1 m~-viGID~GTt~s~va~~~~g~~~~ii~n~~~~r~~Ps~V~~~-~~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~ 78 (768)
|+ +||||||||||+||++++|. ++++.|..|+|.+||+|+|. +++++||..|..+..++|.++++++|||||+. +
T Consensus 1 m~~viGIDlGTt~s~va~~~~g~-~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~--~ 77 (627)
T PRK00290 1 MGKIIGIDLGTTNSCVAVMEGGE-PKVIENAEGARTTPSVVAFTKDGERLVGQPAKRQAVTNPENTIFSIKRLMGRR--D 77 (627)
T ss_pred CCcEEEEEeCcccEEEEEEECCE-EEEEECCCCCcccceEEEEeCCCCEEEcHHHHHhhhhCchhhHHHHHHHhCCC--c
Confidence 54 99999999999999999988 88999999999999999997 67899999999999999999999999999998 6
Q ss_pred hHHHhhhccCCceeeecCCCCEEEEEEecCceeEecHHHHHHHHHHHHHHHHHhhccCCCCeEEEEeCCCCCHHHHHHHH
Q 004211 79 DDVQKDLKLFPFETCESHDGGILIMLEYLGETHKFTPVQILGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDVQRRAYL 158 (768)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~ 158 (768)
+.++...+++||.++..++|...+.+. | ..++|+++++++|++|+..++.+++.++.++|||||++|++.||++++
T Consensus 78 ~~~~~~~~~~p~~~~~~~~~~~~~~~~--~--~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~ 153 (627)
T PRK00290 78 EEVQKDIKLVPYKIVKADNGDAWVEID--G--KKYTPQEISAMILQKLKKDAEDYLGEKVTEAVITVPAYFNDAQRQATK 153 (627)
T ss_pred hHHHHHhhcCCeEEEEcCCCceEEEEC--C--EEEcHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHH
Confidence 778888899999999988888776653 3 679999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCceeeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCCchhhHHHH
Q 004211 159 DAATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEV 238 (768)
Q Consensus 159 ~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~d~~ 238 (768)
+||++|||++++||+||+|||++|++.+ ..+.++|||||||||||+|++++.++.++|+++.|+.++||++||.+
T Consensus 154 ~Aa~~AGl~v~~li~EptAAAl~y~~~~-----~~~~~vlV~D~GggT~dvsv~~~~~~~~~vla~~gd~~lGG~d~D~~ 228 (627)
T PRK00290 154 DAGKIAGLEVLRIINEPTAAALAYGLDK-----KGDEKILVYDLGGGTFDVSILEIGDGVFEVLSTNGDTHLGGDDFDQR 228 (627)
T ss_pred HHHHHcCCceEEEecchHHHHHHhhhcc-----CCCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCcChHHHHHH
Confidence 9999999999999999999999999765 24688999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcccCccCChHHHHHHHHHHHHHhhhcCCCCeeeEEEeccccC----cceEEEecHHHHHHHHHHHHHH
Q 004211 239 LSSYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANAEAPLNIECLMNE----KDVKGFIRREEFEKLSSSLLER 314 (768)
Q Consensus 239 l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~~~i~~l~~~----~d~~~~itr~~fe~~~~~~~~~ 314 (768)
|++|+.++|..+++.++..+++++.||+.+||++|+.||.+..+.+.++.++.+ .++.+.|||++|+++|++++++
T Consensus 229 l~~~~~~~~~~~~~~~~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~~fe~l~~~l~~~ 308 (627)
T PRK00290 229 IIDYLADEFKKENGIDLRKDKMALQRLKEAAEKAKIELSSAQQTEINLPFITADASGPKHLEIKLTRAKFEELTEDLVER 308 (627)
T ss_pred HHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeecccCCCCCeEEEEEECHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999887653 5788999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCCcCEEEEecCCCChHHHHHHHHhhcCCCCCCcCCchhHHHhhHHHHhhHhcCCccccceEEee
Q 004211 315 MRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQCAMLSPQYCVREFEVQD 394 (768)
Q Consensus 315 i~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~GAa~~a~~ls~~~~~~~~~~~d 394 (768)
+..+|+++|+.+++...+|+.|+||||+||+|+|++.|+++||.++..++||++|||+|||++|+++++. ++++.+.|
T Consensus 309 ~~~~i~~~l~~a~~~~~~id~ViLvGGssriP~v~~~l~~~fg~~~~~~~npdeava~GAa~~aa~l~~~--~~~~~~~d 386 (627)
T PRK00290 309 TIEPCKQALKDAGLSVSDIDEVILVGGSTRMPAVQELVKEFFGKEPNKGVNPDEVVAIGAAIQGGVLAGD--VKDVLLLD 386 (627)
T ss_pred HHHHHHHHHHHcCCChhhCcEEEEECCcCCChHHHHHHHHHhCCCCCcCcCChHHHHHhHHHHHHHhcCC--ccceeeee
Confidence 9999999999999999999999999999999999999999999889999999999999999999999984 67899999
Q ss_pred ccceeeEEEecCCCcccceeEEEecCCCCCCceeEEEEeecCc----eEEEEEEeccccCCCCCCCcceeEEecCCCCCC
Q 004211 395 SFPFSIGFSSEKGPICTFSNGVLLPKGQPFPSVKILTLHRSNG----FQLQAFYADQNELPSVVSPQISSFMIGPFQTSH 470 (768)
Q Consensus 395 ~~~~~i~i~~~~~~~~~~~~~~l~~~~~~~p~~k~~~~~~~~~----~~i~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~ 470 (768)
++|++||+++.++ .+.+|||+|+++|++++.+|.+..+ +.|.+++++ +....+|..||+|.|.++++.+
T Consensus 387 ~~~~slgi~~~~~-----~~~~ii~~~t~~P~~~~~~f~~~~d~q~~~~i~v~~ge--~~~~~~~~~lg~~~i~~~~~~~ 459 (627)
T PRK00290 387 VTPLSLGIETLGG-----VMTKLIERNTTIPTKKSQVFSTAADNQPAVTIHVLQGE--REMAADNKSLGRFNLTGIPPAP 459 (627)
T ss_pred ccceEEEEEecCC-----eEEEEecCCCcCCccceEEEEecCCCcceEEEEEEEec--ccccCcCceEEEEEECCCCCCC
Confidence 9999999999876 7889999999999999999987543 567776654 3345788999999999999988
Q ss_pred CCcceEEEEEEEcCCccEEEEeeeeeeeeeecccccccccccccccccccCCCCCCCCCCcccccccccceeeeeeeecc
Q 004211 471 AETARVKVRVHLDLDGVVRVQSASLIEEFVDDSVRRESRDAHLTLEEDAKSDHTPATAIDPEINRKGKVLKRLEIPVNEN 550 (768)
Q Consensus 471 ~~~~~i~v~~~~d~~Gil~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~i~~~ 550 (768)
.|.+.|+|+|.+|.+|+|+|++.+ ..+.+...+.+...
T Consensus 460 ~g~~~i~v~f~~d~~gil~v~a~~------------------------------------------~~~~~~~~~~i~~~ 497 (627)
T PRK00290 460 RGVPQIEVTFDIDANGIVHVSAKD------------------------------------------KGTGKEQSITITAS 497 (627)
T ss_pred CCCceEEEEEEECCCceEEEEEEE------------------------------------------ccCCceeEEEeccc
Confidence 888899999999999999998852 11223334455443
Q ss_pred cCCCCCHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHHHHHHHhhHhhccCCHHHHHHHHHHHHHHHHHHhhcCC
Q 004211 551 VNGGMTKTELSEAVEKEHQLVQQDLKMERTKDRKNALESYVYEMRDKISNIYRSFATESEREGISRNLRDTEEWLYEDGD 630 (768)
Q Consensus 551 ~~~~ls~~e~~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~t~~e~~~l~~~l~~~~~WL~~~g~ 630 (768)
.+|+.++++++++++.+|..+|+..+++.++||+||+|||.+|++|+ ++..++++++|++|.+.|+++++|||++
T Consensus 498 --~~ls~e~i~~~~~~~~~~~~~d~~~~~~~eakN~le~~i~~~~~~l~-~~~~~~~~~e~~~i~~~l~~~~~wL~~~-- 572 (627)
T PRK00290 498 --SGLSDEEIERMVKDAEANAEEDKKRKELVEARNQADSLIYQTEKTLK-ELGDKVPADEKEKIEAAIKELKEALKGE-- 572 (627)
T ss_pred --cccCHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHH-HHhccCCHHHHHHHHHHHHHHHHHHhcC--
Confidence 46999999999999999999999999999999999999999999997 4788999999999999999999999975
Q ss_pred CccHHHHHHHHHHHHHhHhHHHHhhHh
Q 004211 631 DESENVYAERLEDLKKLVDPIEGRYKD 657 (768)
Q Consensus 631 ~a~~~~~~~kl~~L~~~~~pi~~R~~e 657 (768)
+.++|++++++|+++++|+..|+..
T Consensus 573 --~~~~i~~k~~~L~~~~~~~~~~~~~ 597 (627)
T PRK00290 573 --DKEAIKAKTEELTQASQKLGEAMYQ 597 (627)
T ss_pred --CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5689999999999999999988754
No 9
>PLN03184 chloroplast Hsp70; Provisional
Probab=100.00 E-value=6.5e-98 Score=862.12 Aligned_cols=588 Identities=26% Similarity=0.451 Sum_probs=530.5
Q ss_pred eEEEEEcCccceEEEEEEcCCceEEEeCCCCCccceEEEEeeC-CceeecHHHHhhhhhCCcchHhHHHHhcCCCCCChH
Q 004211 2 SVVGFDIGNENCVIAAVKQGGMLDVLLNDESKRETPTVVSFSE-KQRFLGSAGAASAMMNPKSTISQVKRLLGRKFREDD 80 (768)
Q Consensus 2 ~viGID~GTt~s~va~~~~g~~~~ii~n~~~~r~~Ps~V~~~~-~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~ 80 (768)
.|||||||||||+||++.+|. ++++.|..|+|.+||+|+|.+ +++++|..|..+..++|.++++++|||||+.+.+
T Consensus 40 ~viGIDlGTt~s~va~~~~g~-~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d-- 116 (673)
T PLN03184 40 KVVGIDLGTTNSAVAAMEGGK-PTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSE-- 116 (673)
T ss_pred CEEEEEeCcCcEEEEEEECCe-EEEEECCCCCeecceEEEEcCCCCEEECHHHHHhhhhCchhhhHHHHHhhCCCcch--
Confidence 489999999999999999998 889999999999999999975 5799999999999999999999999999999865
Q ss_pred HHhhhccCCceeeecCCCCEEEEEEecCceeEecHHHHHHHHHHHHHHHHHhhccCCCCeEEEEeCCCCCHHHHHHHHHH
Q 004211 81 VQKDLKLFPFETCESHDGGILIMLEYLGETHKFTPVQILGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDVQRRAYLDA 160 (768)
Q Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~A 160 (768)
++...+.+||.++..++|.+.+.+...+ ..++|+++++++|++|++.++.+++.++.++|||||+||++.||+++++|
T Consensus 117 ~~~~~~~~~~~v~~~~~~~v~~~~~~~~--~~~speei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~A 194 (673)
T PLN03184 117 VDEESKQVSYRVVRDENGNVKLDCPAIG--KQFAAEEISAQVLRKLVDDASKFLNDKVTKAVITVPAYFNDSQRTATKDA 194 (673)
T ss_pred hhhhhhcCCeEEEecCCCcEEEEEecCC--eEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHH
Confidence 4566788999999888899888776554 57999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCceeeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCCchhhHHHHHH
Q 004211 161 ATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEVLS 240 (768)
Q Consensus 161 a~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~d~~l~ 240 (768)
|++|||++++||+||+|||++|++.. ..+.++|||||||||||+|++++.++.++|+++.|+.++||++||..|+
T Consensus 195 a~~AGl~v~~li~EPtAAAlayg~~~-----~~~~~vlV~DlGgGT~DvSi~~~~~~~~eVla~~gd~~LGG~dfD~~L~ 269 (673)
T PLN03184 195 GRIAGLEVLRIINEPTAASLAYGFEK-----KSNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIV 269 (673)
T ss_pred HHHCCCCeEEEeCcHHHHHHHhhccc-----CCCCEEEEEECCCCeEEEEEEEecCCEEEEEEecCCCccCHHHHHHHHH
Confidence 99999999999999999999999765 3467899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcccCccCChHHHHHHHHHHHHHhhhcCCCCeeeEEEecccc----CcceEEEecHHHHHHHHHHHHHHHH
Q 004211 241 SYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANAEAPLNIECLMN----EKDVKGFIRREEFEKLSSSLLERMR 316 (768)
Q Consensus 241 ~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~~~i~~l~~----~~d~~~~itr~~fe~~~~~~~~~i~ 316 (768)
+|+..+|..+++.++..+++++.||+.+||++|+.||.+.++.+.++++.. +.++.+.|||++|+++|.++++++.
T Consensus 270 ~~~~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~r~~ 349 (673)
T PLN03184 270 DWLASNFKKDEGIDLLKDKQALQRLTEAAEKAKIELSSLTQTSISLPFITATADGPKHIDTTLTRAKFEELCSDLLDRCK 349 (673)
T ss_pred HHHHHHHHhhcCCCcccCHHHHHHHHHHHHHHHHhcCCCCcceEEEEeeeccCCCCceEEEEECHHHHHHHHHHHHHHHH
Confidence 999999999999899899999999999999999999999999999887643 2578899999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCcCEEEEecCCCChHHHHHHHHhhcCCCCCCcCCchhHHHhhHHHHhhHhcCCccccceEEeecc
Q 004211 317 IPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQCAMLSPQYCVREFEVQDSF 396 (768)
Q Consensus 317 ~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~GAa~~a~~ls~~~~~~~~~~~d~~ 396 (768)
.+|+++|+.+++.+.+|+.|+||||+||||.|+++|+++||..+..++|||+|||+|||++|+++++. ++++.+.|++
T Consensus 350 ~~i~~~L~~a~~~~~dId~ViLvGGssriP~V~~~i~~~fg~~~~~~~npdeaVA~GAAi~aa~ls~~--~~~~~~~dv~ 427 (673)
T PLN03184 350 TPVENALRDAKLSFKDIDEVILVGGSTRIPAVQELVKKLTGKDPNVTVNPDEVVALGAAVQAGVLAGE--VSDIVLLDVT 427 (673)
T ss_pred HHHHHHHHHcCCChhHccEEEEECCccccHHHHHHHHHHhCCCcccccCcchHHHHHHHHHHHHhccC--ccceEEEecc
Confidence 99999999999999999999999999999999999999999888899999999999999999999984 6789999999
Q ss_pred ceeeEEEecCCCcccceeEEEecCCCCCCceeEEEEeec--CceEEEEEEeccccCCCCCCCcceeEEecCCCCCCCCcc
Q 004211 397 PFSIGFSSEKGPICTFSNGVLLPKGQPFPSVKILTLHRS--NGFQLQAFYADQNELPSVVSPQISSFMIGPFQTSHAETA 474 (768)
Q Consensus 397 ~~~i~i~~~~~~~~~~~~~~l~~~~~~~p~~k~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~ 474 (768)
||+||+++.++ .+.+|||+|+++|++++.+|.+. +++.+.+.+..++.....+|..||+|.|.++++++.|.+
T Consensus 428 p~slgi~~~~~-----~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~i~~ge~~~~~~n~~lg~~~i~~i~~~~~g~~ 502 (673)
T PLN03184 428 PLSLGLETLGG-----VMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVP 502 (673)
T ss_pred cccceEEecCC-----eeEEEEeCCCccceecceEeeeecCCCcEEEEEEEeecccccccCceEEEEEEeCCCCCCCCCc
Confidence 99999999876 78999999999999999999874 456666654444444457889999999999999888888
Q ss_pred eEEEEEEEcCCccEEEEeeeeeeeeeecccccccccccccccccccCCCCCCCCCCcccccccccceeeeeeeecccCCC
Q 004211 475 RVKVRVHLDLDGVVRVQSASLIEEFVDDSVRRESRDAHLTLEEDAKSDHTPATAIDPEINRKGKVLKRLEIPVNENVNGG 554 (768)
Q Consensus 475 ~i~v~~~~d~~Gil~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~i~~~~~~~ 554 (768)
+|+|+|.+|.+|+|+|++.+ +.+.++..+.|... .+
T Consensus 503 ~i~v~f~id~~GiL~V~a~~------------------------------------------~~t~~~~~~~i~~~--~~ 538 (673)
T PLN03184 503 QIEVKFDIDANGILSVSATD------------------------------------------KGTGKKQDITITGA--ST 538 (673)
T ss_pred eEEEEEEeCCCCeEEEEEEe------------------------------------------cCCCeEEEEEeccc--cc
Confidence 99999999999999999863 22234445556543 46
Q ss_pred CCHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHHHHHHHhhHhhccCCHHHHHHHHHHHHHHHHHHhhcCCCccH
Q 004211 555 MTKTELSEAVEKEHQLVQQDLKMERTKDRKNALESYVYEMRDKISNIYRSFATESEREGISRNLRDTEEWLYEDGDDESE 634 (768)
Q Consensus 555 ls~~e~~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~t~~e~~~l~~~l~~~~~WL~~~g~~a~~ 634 (768)
||.++++++++++.+|..+|+.++++.++||+||+|||.+|++|.+ +.+++++++|+++.+.|+++++|||.++ .
T Consensus 539 ls~eei~~~~~~~~~~~~~D~~~~~~~eakN~lE~~iy~~r~~l~e-~~~~~~~eer~~l~~~l~~~e~wL~~~d----~ 613 (673)
T PLN03184 539 LPKDEVERMVQEAEKFAKEDKEKRDAVDTKNQADSVVYQTEKQLKE-LGDKVPADVKEKVEAKLKELKDAIASGS----T 613 (673)
T ss_pred ccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHH-HhhhCCHHHHHHHHHHHHHHHHHHhcCC----H
Confidence 9999999999999999999999999999999999999999999964 8889999999999999999999999864 4
Q ss_pred HHHHHHHHHHHHhHhHHHHhh
Q 004211 635 NVYAERLEDLKKLVDPIEGRY 655 (768)
Q Consensus 635 ~~~~~kl~~L~~~~~pi~~R~ 655 (768)
+.+++++++|.+.+.++..++
T Consensus 614 ~~ik~~~~~l~~~l~~l~~~~ 634 (673)
T PLN03184 614 QKMKDAMAALNQEVMQIGQSL 634 (673)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777766654
No 10
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=100.00 E-value=9.8e-97 Score=844.59 Aligned_cols=587 Identities=26% Similarity=0.460 Sum_probs=538.1
Q ss_pred eEEEEEcCccceEEEEEEcCCceEEEeCCCCCccceEEEEeeCCceeecHHHHhhhhhCCcchHhHHHHhcCCCCCChHH
Q 004211 2 SVVGFDIGNENCVIAAVKQGGMLDVLLNDESKRETPTVVSFSEKQRFLGSAGAASAMMNPKSTISQVKRLLGRKFREDDV 81 (768)
Q Consensus 2 ~viGID~GTt~s~va~~~~g~~~~ii~n~~~~r~~Ps~V~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~~ 81 (768)
.+||||||||||+||++.+|. ++++.|..|.|.+||+|+|.+++++||..|+.+...+|.++++++||+||+.+.++.+
T Consensus 28 ~viGIDLGTTnS~vA~~~~~~-~~ii~n~~g~r~tPS~V~f~~~~~lvG~~Ak~~~~~~p~~ti~~~KRliG~~~~d~~v 106 (657)
T PTZ00186 28 DVIGVDLGTTYSCVATMDGDK-ARVLENSEGFRTTPSVVAFKGSEKLVGLAAKRQAITNPQSTFYAVKRLIGRRFEDEHI 106 (657)
T ss_pred eEEEEEeCcCeEEEEEEeCCc-eEEeecCCCCcccceEEEECCCCEEEcHHHHHhhhhCchhHHHHHHHHhccccccHHH
Confidence 489999999999999998887 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhccCCceeeecCCCCEEEEEEecCceeEecHHHHHHHHHHHHHHHHHhhccCCCCeEEEEeCCCCCHHHHHHHHHHH
Q 004211 82 QKDLKLFPFETCESHDGGILIMLEYLGETHKFTPVQILGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDVQRRAYLDAA 161 (768)
Q Consensus 82 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa 161 (768)
+...+.+||.++..++|.+.+.. +....++|+++++++|++|+..|+.++|.++.++|||||+||++.||+++++||
T Consensus 107 ~~~~~~~p~~vv~~~~~~~~i~~---~~~~~~speeisa~iL~~Lk~~Ae~~lg~~v~~aVITVPayF~~~qR~at~~Aa 183 (657)
T PTZ00186 107 QKDIKNVPYKIVRAGNGDAWVQD---GNGKQYSPSQIGAFVLEKMKETAENFLGHKVSNAVVTCPAYFNDAQRQATKDAG 183 (657)
T ss_pred HHhhccCcEEEEEcCCCceEEEe---CCCeEEcHHHHHHHHHHHHHHHHHHHhCCccceEEEEECCCCChHHHHHHHHHH
Confidence 99999999999988888776553 224679999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCceeeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCCchhhHHHHHHH
Q 004211 162 TIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEVLSS 241 (768)
Q Consensus 162 ~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~d~~l~~ 241 (768)
++|||++++||+||+|||++|++.. ..+.++||||+||||||+||+++.++.++|+++.|+.++||++||..|++
T Consensus 184 ~~AGl~v~rlInEPtAAAlayg~~~-----~~~~~vlV~DlGGGT~DvSil~~~~g~~~V~at~Gd~~LGG~DfD~~l~~ 258 (657)
T PTZ00186 184 TIAGLNVIRVVNEPTAAALAYGMDK-----TKDSLIAVYDLGGGTFDISVLEIAGGVFEVKATNGDTHLGGEDFDLALSD 258 (657)
T ss_pred HHcCCCeEEEEcChHHHHHHHhccC-----CCCCEEEEEECCCCeEEEEEEEEeCCEEEEEEecCCCCCCchhHHHHHHH
Confidence 9999999999999999999999764 34679999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcccCccCChHHHHHHHHHHHHHhhhcCCCCeeeEEEeccccC----cceEEEecHHHHHHHHHHHHHHHHH
Q 004211 242 YFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANAEAPLNIECLMNE----KDVKGFIRREEFEKLSSSLLERMRI 317 (768)
Q Consensus 242 ~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~~~i~~l~~~----~d~~~~itr~~fe~~~~~~~~~i~~ 317 (768)
|+.++|..+++.++..+++++.+|+.+||++|+.||.+..+.+.++.+..+ .++.+.|||++|+++|+++++++..
T Consensus 259 ~~~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~i~~~~~g~~~~~~~ItR~efe~l~~~l~~r~~~ 338 (657)
T PTZ00186 259 YILEEFRKTSGIDLSKERMALQRVREAAEKAKCELSSAMETEVNLPFITANADGAQHIQMHISRSKFEGITQRLIERSIA 338 (657)
T ss_pred HHHHHHhhhcCCCcccCHHHHHHHHHHHHHHHHHhCCCCceEEEEeeeccCCCCCcceEEEecHHHHHHHHHHHHHHHHH
Confidence 999999999999998899999999999999999999999999998876542 3588999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCcCEEEEecCCCChHHHHHHHHhhcCCCCCCcCCchhHHHhhHHHHhhHhcCCccccceEEeeccc
Q 004211 318 PCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQCAMLSPQYCVREFEVQDSFP 397 (768)
Q Consensus 318 ~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~GAa~~a~~ls~~~~~~~~~~~d~~~ 397 (768)
+++++|+++++.+.+|+.|+||||+||||.|+++|+++||.++..++|||+|||+|||++|+++++. ++++.+.|++|
T Consensus 339 ~v~~~L~~a~~~~~dId~VvLVGGssriP~V~~~l~~~fg~~~~~~~nPdeaVA~GAAi~a~~l~~~--~~~~~l~Dv~p 416 (657)
T PTZ00186 339 PCKQCMKDAGVELKEINDVVLVGGMTRMPKVVEEVKKFFQKDPFRGVNPDEAVALGAATLGGVLRGD--VKGLVLLDVTP 416 (657)
T ss_pred HHHHHHHHcCCChhhCCEEEEECCcccChHHHHHHHHHhCCCccccCCCchHHHHhHHHHHHHhccc--cCceEEEeecc
Confidence 9999999999999999999999999999999999999999888899999999999999999999985 57899999999
Q ss_pred eeeEEEecCCCcccceeEEEecCCCCCCceeEEEEeecCc----eEEEEEEeccccCCCCCCCcceeEEecCCCCCCCCc
Q 004211 398 FSIGFSSEKGPICTFSNGVLLPKGQPFPSVKILTLHRSNG----FQLQAFYADQNELPSVVSPQISSFMIGPFQTSHAET 473 (768)
Q Consensus 398 ~~i~i~~~~~~~~~~~~~~l~~~~~~~p~~k~~~~~~~~~----~~i~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~ 473 (768)
|+||+++.++ .+.+|||||+++|++++.+|++..+ +.|.+++++. ....+|..||+|.|.++|+++.|.
T Consensus 417 ~slgie~~~g-----~~~~iI~rnt~iP~~~~~~f~t~~dnQ~~v~i~i~qGe~--~~~~~n~~lg~~~l~~ip~~~~G~ 489 (657)
T PTZ00186 417 LSLGIETLGG-----VFTRMIPKNTTIPTKKSQTFSTAADNQTQVGIKVFQGER--EMAADNQMMGQFDLVGIPPAPRGV 489 (657)
T ss_pred ccccceecCC-----EEEEEEeCCCEeeEEEeeccccccCCCceEEEEEEEecc--cccccccccceEEEcCCCCCCCCC
Confidence 9999999877 7899999999999999999987533 6777766643 345789999999999999999999
Q ss_pred ceEEEEEEEcCCccEEEEeeeeeeeeeecccccccccccccccccccCCCCCCCCCCcccccccccceeeeeeeecccCC
Q 004211 474 ARVKVRVHLDLDGVVRVQSASLIEEFVDDSVRRESRDAHLTLEEDAKSDHTPATAIDPEINRKGKVLKRLEIPVNENVNG 553 (768)
Q Consensus 474 ~~i~v~~~~d~~Gil~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~i~~~~~~ 553 (768)
++|+|+|.+|.||+|+|++.+ +.+++...+.|... .
T Consensus 490 ~~I~Vtf~iD~nGiL~V~a~d------------------------------------------~~tg~~~~~~i~~~--~ 525 (657)
T PTZ00186 490 PQIEVTFDIDANGICHVTAKD------------------------------------------KATGKTQNITITAN--G 525 (657)
T ss_pred CcEEEEEEEcCCCEEEEEEEE------------------------------------------ccCCcEEEEEeccC--c
Confidence 999999999999999999963 44556666777654 3
Q ss_pred CCCHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHHHHHHHhhHhhccCCHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 004211 554 GMTKTELSEAVEKEHQLVQQDLKMERTKDRKNALESYVYEMRDKISNIYRSFATESEREGISRNLRDTEEWLYEDGDDES 633 (768)
Q Consensus 554 ~ls~~e~~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~t~~e~~~l~~~l~~~~~WL~~~g~~a~ 633 (768)
+|++++++++.+...++..+|...+++.+++|.+|+++|.++..+.+. ..+++++++.+...++..++||..+ +.+
T Consensus 526 ~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~--~~~ 601 (657)
T PTZ00186 526 GLSKEQIEQMIRDSEQHAEADRVKRELVEVRNNAETQLTTAERQLGEW--KYVSDAEKENVKTLVAELRKAMENP--NVA 601 (657)
T ss_pred cCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh--ccCCHHHHHHHHHHHHHHHHHHhcC--CcC
Confidence 699999999999999999999999999999999999999999999652 4689999999999999999999743 446
Q ss_pred HHHHHHHHHHHHHhHhHHHHh
Q 004211 634 ENVYAERLEDLKKLVDPIEGR 654 (768)
Q Consensus 634 ~~~~~~kl~~L~~~~~pi~~R 654 (768)
.+.+++++++|++.+.++..+
T Consensus 602 ~~~~~~~~~~l~~~~~~~~~~ 622 (657)
T PTZ00186 602 KDDLAAATDKLQKAVMECGRT 622 (657)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999988874
No 11
>CHL00094 dnaK heat shock protein 70
Probab=100.00 E-value=1e-96 Score=850.89 Aligned_cols=590 Identities=27% Similarity=0.456 Sum_probs=532.6
Q ss_pred eEEEEEcCccceEEEEEEcCCceEEEeCCCCCccceEEEEeeC-CceeecHHHHhhhhhCCcchHhHHHHhcCCCCCChH
Q 004211 2 SVVGFDIGNENCVIAAVKQGGMLDVLLNDESKRETPTVVSFSE-KQRFLGSAGAASAMMNPKSTISQVKRLLGRKFREDD 80 (768)
Q Consensus 2 ~viGID~GTt~s~va~~~~g~~~~ii~n~~~~r~~Ps~V~~~~-~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~ 80 (768)
.+||||||||||+||++.+|. +.++.|..|+|.+||+|+|.+ +++++|..|..+...+|.++++++||+||+.+.+
T Consensus 3 ~viGIDlGTt~s~va~~~~g~-~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~~-- 79 (621)
T CHL00094 3 KVVGIDLGTTNSVVAVMEGGK-PTVIPNAEGFRTTPSIVAYTKKGDLLVGQIAKRQAVINPENTFYSVKRFIGRKFSE-- 79 (621)
T ss_pred ceEEEEeCcccEEEEEEECCE-EEEEECCCCCcccceEEEEcCCCCEEECHHHHHhHHhCccceehhhHHhcCCChHH--
Confidence 599999999999999999998 889999999999999999975 4699999999999999999999999999998864
Q ss_pred HHhhhccCCceeeecCCCCEEEEEEecCceeEecHHHHHHHHHHHHHHHHHhhccCCCCeEEEEeCCCCCHHHHHHHHHH
Q 004211 81 VQKDLKLFPFETCESHDGGILIMLEYLGETHKFTPVQILGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDVQRRAYLDA 160 (768)
Q Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~A 160 (768)
+....+.+||.+...++|.+.+.+...+ ..++|+++++++|++|++.|+.+++.++.++|||||++|++.||+++++|
T Consensus 80 ~~~~~~~~~~~v~~~~~g~i~~~~~~~~--~~~s~eei~a~iL~~l~~~ae~~lg~~v~~~VItVPa~f~~~qR~a~~~A 157 (621)
T CHL00094 80 ISEEAKQVSYKVKTDSNGNIKIECPALN--KDFSPEEISAQVLRKLVEDASKYLGETVTQAVITVPAYFNDSQRQATKDA 157 (621)
T ss_pred HHhhhhcCCeEEEECCCCCEEEEEecCC--eEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHH
Confidence 5556678999999888898888765444 57999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCceeeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCCchhhHHHHHH
Q 004211 161 ATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEVLS 240 (768)
Q Consensus 161 a~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~d~~l~ 240 (768)
|++|||++++||+||+|||++|+... ..+.++|||||||||||+|++++.++.++|+++.|+..+||++||..|+
T Consensus 158 a~~AGl~v~~li~EptAAAlay~~~~-----~~~~~vlV~DlGgGT~DvSv~~~~~~~~~vla~~gd~~lGG~d~D~~l~ 232 (621)
T CHL00094 158 GKIAGLEVLRIINEPTAASLAYGLDK-----KNNETILVFDLGGGTFDVSILEVGDGVFEVLSTSGDTHLGGDDFDKKIV 232 (621)
T ss_pred HHHcCCceEEEeccHHHHHHHhcccc-----CCCCEEEEEEcCCCeEEEEEEEEcCCEEEEEEEecCCCcChHHHHHHHH
Confidence 99999999999999999999998764 3457899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcccCccCChHHHHHHHHHHHHHhhhcCCCCeeeEEEeccccC----cceEEEecHHHHHHHHHHHHHHHH
Q 004211 241 SYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANAEAPLNIECLMNE----KDVKGFIRREEFEKLSSSLLERMR 316 (768)
Q Consensus 241 ~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~~~i~~l~~~----~d~~~~itr~~fe~~~~~~~~~i~ 316 (768)
+|+.++|.++++.++..+++++.+|+.+||++|+.||.+.++.+.++++..+ .++...|||++|+++|+++++++.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~~~~ 312 (621)
T CHL00094 233 NWLIKEFKKKEGIDLSKDRQALQRLTEAAEKAKIELSNLTQTEINLPFITATQTGPKHIEKTLTRAKFEELCSDLINRCR 312 (621)
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeecccCCCCCeeEEEEEcHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999877542 468889999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCcCEEEEecCCCChHHHHHHHHhhcCCCCCCcCCchhHHHhhHHHHhhHhcCCccccceEEeecc
Q 004211 317 IPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQCAMLSPQYCVREFEVQDSF 396 (768)
Q Consensus 317 ~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~GAa~~a~~ls~~~~~~~~~~~d~~ 396 (768)
.+|+++|+++++.+.+|+.|+||||+||+|.|++.|+++||.++..++||++|||+|||++|+++++. ++++.+.|++
T Consensus 313 ~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg~~~~~~~~pdeava~GAA~~aa~ls~~--~~~~~~~d~~ 390 (621)
T CHL00094 313 IPVENALKDAKLDKSDIDEVVLVGGSTRIPAIQELVKKLLGKKPNQSVNPDEVVAIGAAVQAGVLAGE--VKDILLLDVT 390 (621)
T ss_pred HHHHHHHHHcCCChhhCcEEEEECCccCChHHHHHHHHHhCCCcCcCCCchhHHHhhhHHHHHHhcCC--ccceeeeeee
Confidence 99999999999999999999999999999999999999999888899999999999999999999884 6789999999
Q ss_pred ceeeEEEecCCCcccceeEEEecCCCCCCceeEEEEeec--CceEEEEEEeccccCCCCCCCcceeEEecCCCCCCCCcc
Q 004211 397 PFSIGFSSEKGPICTFSNGVLLPKGQPFPSVKILTLHRS--NGFQLQAFYADQNELPSVVSPQISSFMIGPFQTSHAETA 474 (768)
Q Consensus 397 ~~~i~i~~~~~~~~~~~~~~l~~~~~~~p~~k~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~ 474 (768)
|++||+++.++ .+.+|||+|+++|++++.+|.+. ++.++.+.+..+++....+|..||+|.|.++++.+.|.+
T Consensus 391 ~~~lgi~~~~~-----~~~~ii~~~t~iP~~~~~~~~~~~~~q~~v~i~i~~ge~~~~~~n~~lg~~~i~~~~~~~~g~~ 465 (621)
T CHL00094 391 PLSLGVETLGG-----VMTKIIPRNTTIPTKKSEVFSTAVDNQTNVEIHVLQGERELAKDNKSLGTFRLDGIPPAPRGVP 465 (621)
T ss_pred ceeeeeeccCC-----EEEEEEeCCCccceeeeEEEEeccCCCcEEEEEEEeeccccCCCCCEEEEEEEeCCCCCCCCCC
Confidence 99999999876 79999999999999999999864 344444433333444457899999999999999888888
Q ss_pred eEEEEEEEcCCccEEEEeeeeeeeeeecccccccccccccccccccCCCCCCCCCCcccccccccceeeeeeeecccCCC
Q 004211 475 RVKVRVHLDLDGVVRVQSASLIEEFVDDSVRRESRDAHLTLEEDAKSDHTPATAIDPEINRKGKVLKRLEIPVNENVNGG 554 (768)
Q Consensus 475 ~i~v~~~~d~~Gil~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~i~~~~~~~ 554 (768)
+|+|+|++|.+|+|+|++.+ +.+.+...+++... .+
T Consensus 466 ~i~v~f~id~~Gil~v~~~~------------------------------------------~~t~~~~~~~i~~~--~~ 501 (621)
T CHL00094 466 QIEVTFDIDANGILSVTAKD------------------------------------------KGTGKEQSITIQGA--ST 501 (621)
T ss_pred cEEEEEEECCCCeEEEEEee------------------------------------------ccCCceeeeeeccc--hh
Confidence 99999999999999999863 11223334455433 46
Q ss_pred CCHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHHHHHHHhhHhhccCCHHHHHHHHHHHHHHHHHHhhcCCCccH
Q 004211 555 MTKTELSEAVEKEHQLVQQDLKMERTKDRKNALESYVYEMRDKISNIYRSFATESEREGISRNLRDTEEWLYEDGDDESE 634 (768)
Q Consensus 555 ls~~e~~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~t~~e~~~l~~~l~~~~~WL~~~g~~a~~ 634 (768)
|+.++++++++++.+|..+|+..+++.++||+||+|||.+|++|++ +..++++++|+++.+.|+++++|||+++ .
T Consensus 502 ls~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~le~~i~~~~~~l~~-~~~~~~~~~~~~~~~~l~~~~~wl~~~~----~ 576 (621)
T CHL00094 502 LPKDEVERMVKEAEKNAAEDKEKREKIDLKNQAESLCYQAEKQLKE-LKDKISEEKKEKIENLIKKLRQALQNDN----Y 576 (621)
T ss_pred ccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHhHHHHHHHHHHHHH-HhccCCHHHHHHHHHHHHHHHHHHhcCC----H
Confidence 9999999999999999999999999999999999999999999975 8889999999999999999999999864 3
Q ss_pred HHHHHHHHHHHHhHhHHHHhhHh
Q 004211 635 NVYAERLEDLKKLVDPIEGRYKD 657 (768)
Q Consensus 635 ~~~~~kl~~L~~~~~pi~~R~~e 657 (768)
++|++++++|+++++|+..++..
T Consensus 577 ~~~~~~~~~l~~~~~~~~~kl~~ 599 (621)
T CHL00094 577 ESIKSLLEELQKALMEIGKEVYS 599 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 78999999999999999986544
No 12
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=100.00 E-value=3e-96 Score=847.98 Aligned_cols=584 Identities=27% Similarity=0.485 Sum_probs=528.9
Q ss_pred eEEEEEcCccceEEEEEEcCCceEEEeCCCCCccceEEEEeeCC-ceeecHHHHhhhhhCCcchHhHHHHhcCCCCCChH
Q 004211 2 SVVGFDIGNENCVIAAVKQGGMLDVLLNDESKRETPTVVSFSEK-QRFLGSAGAASAMMNPKSTISQVKRLLGRKFREDD 80 (768)
Q Consensus 2 ~viGID~GTt~s~va~~~~g~~~~ii~n~~~~r~~Ps~V~~~~~-~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~ 80 (768)
.|||||||||||+||++++|. +.++.|..|+|.+||+|+|.++ ++++|..|..+..++|.++++++|||||+.+ +.
T Consensus 1 ~viGIDlGtt~s~va~~~~g~-~~ii~n~~~~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~~--~~ 77 (595)
T TIGR02350 1 KIIGIDLGTTNSCVAVMEGGE-PVVIPNAEGARTTPSVVAFTKNGERLVGQPAKRQAVTNPENTIYSIKRFMGRRF--DE 77 (595)
T ss_pred CEEEEEeCcccEEEEEEECCE-EEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhhhhCchhhhHHHHHHhCCCc--hH
Confidence 389999999999999999998 7899999999999999999865 7999999999999999999999999999988 34
Q ss_pred HHhhhccCCceeeecCCCCEEEEEEecCceeEecHHHHHHHHHHHHHHHHHhhccCCCCeEEEEeCCCCCHHHHHHHHHH
Q 004211 81 VQKDLKLFPFETCESHDGGILIMLEYLGETHKFTPVQILGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDVQRRAYLDA 160 (768)
Q Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~A 160 (768)
++...+.+||. +..++|.+.+.+. ...++|+++++++|++|+..++.+++.++.++|||||++|++.||+++++|
T Consensus 78 ~~~~~~~~~~~-v~~~~~~~~~~v~----~~~~~peel~a~~L~~l~~~a~~~~~~~v~~~VItVPa~f~~~qR~a~~~A 152 (595)
T TIGR02350 78 VTEEAKRVPYK-VVGDGGDVRVKVD----GKEYTPQEISAMILQKLKKDAEAYLGEKVTEAVITVPAYFNDAQRQATKDA 152 (595)
T ss_pred HHHHhhcCCee-EEcCCCceEEEEC----CEEecHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHH
Confidence 67778899999 5566788777764 367999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCceeeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCCchhhHHHHHH
Q 004211 161 ATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEVLS 240 (768)
Q Consensus 161 a~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~d~~l~ 240 (768)
|++|||++++||+||+|||++|++.+. ..+.++|||||||||||+|++++.++.++|+++.|+..+||++||..|+
T Consensus 153 a~~AGl~v~~li~EptAAAl~y~~~~~----~~~~~vlV~D~Gggt~dvsv~~~~~~~~~v~~~~gd~~lGG~d~D~~l~ 228 (595)
T TIGR02350 153 GKIAGLEVLRIINEPTAAALAYGLDKS----KKDEKILVFDLGGGTFDVSILEIGDGVFEVLSTAGDTHLGGDDFDQRII 228 (595)
T ss_pred HHHcCCceEEEecchHHHHHHHhhccc----CCCcEEEEEECCCCeEEEEEEEecCCeEEEEEecCCcccCchhHHHHHH
Confidence 999999999999999999999997652 3478999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcccCccCChHHHHHHHHHHHHHhhhcCCCCeeeEEEeccccC----cceEEEecHHHHHHHHHHHHHHHH
Q 004211 241 SYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANAEAPLNIECLMNE----KDVKGFIRREEFEKLSSSLLERMR 316 (768)
Q Consensus 241 ~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~~~i~~l~~~----~d~~~~itr~~fe~~~~~~~~~i~ 316 (768)
+|+.++|..+++.++..+++++.||+.+||++|+.||.+.++.+.++++..+ .++.+.|||++|+++|+|+++++.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~l~~~~~ 308 (595)
T TIGR02350 229 DWLADEFKKEEGIDLSKDKMALQRLKEAAEKAKIELSSVLSTEINLPFITADASGPKHLEMTLTRAKFEELTADLVERTK 308 (595)
T ss_pred HHHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEeeecccCCCCCeeEEEEEeHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999877543 568899999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCcCEEEEecCCCChHHHHHHHHhhcCCCCCCcCCchhHHHhhHHHHhhHhcCCccccceEEeecc
Q 004211 317 IPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQCAMLSPQYCVREFEVQDSF 396 (768)
Q Consensus 317 ~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~GAa~~a~~ls~~~~~~~~~~~d~~ 396 (768)
.+|+++|+.+++.+.+|+.|+||||+||+|+|++.|+++||.++..++||++|||+|||++|+++++. ++++.+.|++
T Consensus 309 ~~i~~~l~~a~~~~~~i~~V~LvGGssriP~v~~~i~~~f~~~~~~~~~pdeava~GAa~~aa~l~~~--~~~~~~~d~~ 386 (595)
T TIGR02350 309 EPVRQALKDAGLSASDIDEVILVGGSTRIPAVQELVKDFFGKEPNKSVNPDEVVAIGAAIQGGVLKGD--VKDVLLLDVT 386 (595)
T ss_pred HHHHHHHHHcCCCHhHCcEEEEECCcccChHHHHHHHHHhCCcccCCcCcHHHHHHHHHHHHHHhcCC--cccceeeecc
Confidence 99999999999999999999999999999999999999999888999999999999999999999986 6789999999
Q ss_pred ceeeEEEecCCCcccceeEEEecCCCCCCceeEEEEeecCc----eEEEEEEeccccCCCCCCCcceeEEecCCCCCCCC
Q 004211 397 PFSIGFSSEKGPICTFSNGVLLPKGQPFPSVKILTLHRSNG----FQLQAFYADQNELPSVVSPQISSFMIGPFQTSHAE 472 (768)
Q Consensus 397 ~~~i~i~~~~~~~~~~~~~~l~~~~~~~p~~k~~~~~~~~~----~~i~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~ 472 (768)
||+||+++.++ .+.+||++|+++|++++.+|.+..+ +.+.++++ +.....+|..||+|.|+++++.+.|
T Consensus 387 ~~~igi~~~~~-----~~~~ii~~~~~iP~~~~~~~~~~~d~q~~v~i~i~~g--e~~~~~~~~~lg~~~i~~~~~~~~g 459 (595)
T TIGR02350 387 PLSLGIETLGG-----VMTKLIERNTTIPTKKSQVFSTAADNQPAVDIHVLQG--ERPMAADNKSLGRFELTGIPPAPRG 459 (595)
T ss_pred cceeEEEecCC-----ceEEEEeCCCcCCccceEeeeccCCCCcEEEEEEEee--cccccccCcEeEEEEECCCCCCCCC
Confidence 99999999876 7889999999999999999987543 34555444 3444578899999999999988888
Q ss_pred cceEEEEEEEcCCccEEEEeeeeeeeeeecccccccccccccccccccCCCCCCCCCCcccccccccceeeeeeeecccC
Q 004211 473 TARVKVRVHLDLDGVVRVQSASLIEEFVDDSVRRESRDAHLTLEEDAKSDHTPATAIDPEINRKGKVLKRLEIPVNENVN 552 (768)
Q Consensus 473 ~~~i~v~~~~d~~Gil~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~i~~~~~ 552 (768)
.++|+|+|.+|.+|+|+|++.+ ..++++..+.++..
T Consensus 460 ~~~i~v~f~~d~~G~l~v~~~~------------------------------------------~~~~~~~~~~i~~~-- 495 (595)
T TIGR02350 460 VPQIEVTFDIDANGILHVSAKD------------------------------------------KGTGKEQSITITAS-- 495 (595)
T ss_pred CceEEEEEEEcCCCeEEEEEEE------------------------------------------ccCCceEEEEeccc--
Confidence 8899999999999999999863 11223334555543
Q ss_pred CCCCHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHHHHHHHhhHhhccCCHHHHHHHHHHHHHHHHHHhhcCCCc
Q 004211 553 GGMTKTELSEAVEKEHQLVQQDLKMERTKDRKNALESYVYEMRDKISNIYRSFATESEREGISRNLRDTEEWLYEDGDDE 632 (768)
Q Consensus 553 ~~ls~~e~~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~t~~e~~~l~~~l~~~~~WL~~~g~~a 632 (768)
.+||.++++++.+++.+|..+|+..+++.++||+||+|||.+|++|++ +..++++++|+++.+.++++++|||++
T Consensus 496 ~~ls~~~~~~~~~~~~~~~~~D~~~~~~~e~kn~lEs~iy~~r~~l~~-~~~~~~~~e~~~l~~~l~~~~~wL~~~---- 570 (595)
T TIGR02350 496 SGLSEEEIERMVKEAEANAEEDKKRKEEIEARNNADSLAYQAEKTLKE-AGDKLPAEEKEKIEKAVAELKEALKGE---- 570 (595)
T ss_pred cccCHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHH-hhccCCHHHHHHHHHHHHHHHHHHhcC----
Confidence 369999999999999999999999999999999999999999999975 688999999999999999999999975
Q ss_pred cHHHHHHHHHHHHHhHhHHHHhh
Q 004211 633 SENVYAERLEDLKKLVDPIEGRY 655 (768)
Q Consensus 633 ~~~~~~~kl~~L~~~~~pi~~R~ 655 (768)
+..+|++++++|+++++++..++
T Consensus 571 d~~~i~~~~~~l~~~~~~~~~~~ 593 (595)
T TIGR02350 571 DVEEIKAKTEELQQALQKLAEAM 593 (595)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Confidence 45689999999999999988753
No 13
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=100.00 E-value=1.7e-93 Score=818.58 Aligned_cols=579 Identities=26% Similarity=0.424 Sum_probs=520.7
Q ss_pred EEEEEcCccceEEEEEEcCCceEEEeCCCCCccceEEEEeeCC-ceeecHHHHhhhhhCCcchHhHHHHhcCCCCCChHH
Q 004211 3 VVGFDIGNENCVIAAVKQGGMLDVLLNDESKRETPTVVSFSEK-QRFLGSAGAASAMMNPKSTISQVKRLLGRKFREDDV 81 (768)
Q Consensus 3 viGID~GTt~s~va~~~~g~~~~ii~n~~~~r~~Ps~V~~~~~-~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~~ 81 (768)
+||||||||||+||++.+|. ++++.|..|+|.+||+|+|.++ +++||..|+.+..++|.++++++|||||+.+.+...
T Consensus 1 ~iGIDlGTtns~va~~~~g~-~~ii~n~~g~~~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~Kr~iG~~~~d~~~ 79 (599)
T TIGR01991 1 AVGIDLGTTNSLVASVRSGV-PEVLPDAEGRVLLPSVVRYLKDGGVEVGKEALAAAAEDPKNTISSVKRLMGRSIEDIKT 79 (599)
T ss_pred CEEEEEccccEEEEEEECCE-EEEEECCCCCcccCeEEEEeCCCCEEecHHHHHhhhhChhhhHHHHHHHhCCCccchhh
Confidence 58999999999999999988 9999999999999999999865 789999999999999999999999999999876432
Q ss_pred HhhhccCCceeeecCCCCEEEEEEecCceeEecHHHHHHHHHHHHHHHHHhhccCCCCeEEEEeCCCCCHHHHHHHHHHH
Q 004211 82 QKDLKLFPFETCESHDGGILIMLEYLGETHKFTPVQILGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDVQRRAYLDAA 161 (768)
Q Consensus 82 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa 161 (768)
.+.+||.++..++|.+.+.+.. ..++|+++++++|++|+..++.+++.++.++|||||+||++.||+++++||
T Consensus 80 ---~~~~~~~~~~~~~~~~~~~~~~----~~~~p~ei~a~iL~~lk~~a~~~lg~~v~~~VItVPa~f~~~qR~a~~~Aa 152 (599)
T TIGR01991 80 ---FSILPYRFVDGPGEMVRLRTVQ----GTVTPVEVSAEILKKLKQRAEESLGGDLVGAVITVPAYFDDAQRQATKDAA 152 (599)
T ss_pred ---cccCCEEEEEcCCCceEEEeCC----CEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHH
Confidence 5678999988888888887653 268999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCceeeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCCchhhHHHHHHH
Q 004211 162 TIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEVLSS 241 (768)
Q Consensus 162 ~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~d~~l~~ 241 (768)
++|||++++|++||+|||++|++.. ..+.++|||||||||||+|++++.++.++|+++.|+.++||++||..|++
T Consensus 153 ~~AGl~v~~li~EPtAAAlay~~~~-----~~~~~vlV~DlGgGT~DvSi~~~~~~~~~vla~~gd~~lGG~d~D~~l~~ 227 (599)
T TIGR01991 153 RLAGLNVLRLLNEPTAAAVAYGLDK-----ASEGIYAVYDLGGGTFDVSILKLTKGVFEVLATGGDSALGGDDFDHALAK 227 (599)
T ss_pred HHcCCCceEEecCHHHHHHHHhhcc-----CCCCEEEEEEcCCCeEEEEEEEEcCCeEEEEEEcCCCCCCHHHHHHHHHH
Confidence 9999999999999999999999765 34678999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcccCccCChHHHHHHHHHHHHHhhhcCCCCeeeEEEeccccCcceEEEecHHHHHHHHHHHHHHHHHHHHH
Q 004211 242 YFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANAEAPLNIECLMNEKDVKGFIRREEFEKLSSSLLERMRIPCQK 321 (768)
Q Consensus 242 ~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~~~i~~l~~~~d~~~~itr~~fe~~~~~~~~~i~~~i~~ 321 (768)
|+.+++ +.+...+++.+.+|+.+||++|+.||.+..+.+.++. ++.++.++|||++|+++|+|+++++..++++
T Consensus 228 ~l~~~~----~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~--~g~~~~~~itr~efe~l~~~ll~~i~~~i~~ 301 (599)
T TIGR01991 228 WILKQL----GISADLNPEDQRLLLQAARAAKEALTDAESVEVDFTL--DGKDFKGKLTRDEFEALIQPLVQKTLSICRR 301 (599)
T ss_pred HHHHhh----CCCCCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEEE--CCcEEEEEEeHHHHHHHHHHHHHHHHHHHHH
Confidence 999664 4555678999999999999999999999988888874 7889999999999999999999999999999
Q ss_pred HHHhCCCCCCCcCEEEEecCCCChHHHHHHHHhhcCCCCCCcCCchhHHHhhHHHHhhHhcCCccccceEEeeccceeeE
Q 004211 322 ALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQCAMLSPQYCVREFEVQDSFPFSIG 401 (768)
Q Consensus 322 ~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~GAa~~a~~ls~~~~~~~~~~~d~~~~~i~ 401 (768)
+|+++++.+.+|+.|+||||+||+|+|+++|+++||..+..++||++|||+|||++|+++++.++.+++.+.|++||+||
T Consensus 302 ~L~~a~~~~~~id~ViLvGGssriP~V~~~l~~~f~~~~~~~~npdeaVA~GAai~a~~l~~~~~~~~~~l~dv~p~slg 381 (599)
T TIGR01991 302 ALRDAGLSVEEIKGVVLVGGSTRMPLVRRAVAELFGQEPLTDIDPDQVVALGAAIQADLLAGNRIGNDLLLLDVTPLSLG 381 (599)
T ss_pred HHHHcCCChhhCCEEEEECCcCCChHHHHHHHHHhCCCCCCCCCCcHHHHHHHHHHHHHhccccccCceEEEEeeeeeeE
Confidence 99999999999999999999999999999999999988888999999999999999999999888889999999999999
Q ss_pred EEecCCCcccceeEEEecCCCCCCceeEEEEee--cCceEEEEEEeccccCCCCCCCcceeEEecCCCCCCCCcceEEEE
Q 004211 402 FSSEKGPICTFSNGVLLPKGQPFPSVKILTLHR--SNGFQLQAFYADQNELPSVVSPQISSFMIGPFQTSHAETARVKVR 479 (768)
Q Consensus 402 i~~~~~~~~~~~~~~l~~~~~~~p~~k~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~i~v~ 479 (768)
+++.++ .+.+|||+|+++|++++..|++ +++..+.+.+.++++....+|..||+|.|.++++.+.|.++|+|+
T Consensus 382 i~~~~g-----~~~~ii~rnt~iP~~~~~~~~t~~d~q~~v~i~i~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~ 456 (599)
T TIGR01991 382 IETMGG-----LVEKIIPRNTPIPVARAQEFTTYKDGQTAMVIHVVQGERELVEDCRSLARFELRGIPPMVAGAARIRVT 456 (599)
T ss_pred EEecCC-----EEEEEEeCCCcCCccceEEEEEccCCCeEEEEEEEeecccccccCceEEEEEEcCCCCCCCCCCcEEEE
Confidence 999877 7899999999999999888875 455445443333344445789999999999999998898999999
Q ss_pred EEEcCCccEEEEeeeeeeeeeecccccccccccccccccccCCCCCCCCCCcccccccccceeeeeeeecccCCCCCHHH
Q 004211 480 VHLDLDGVVRVQSASLIEEFVDDSVRRESRDAHLTLEEDAKSDHTPATAIDPEINRKGKVLKRLEIPVNENVNGGMTKTE 559 (768)
Q Consensus 480 ~~~d~~Gil~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~i~~~~~~~ls~~e 559 (768)
|++|.||+|+|++.+ +.++++..+.|... .+|++++
T Consensus 457 f~id~~gil~V~a~~------------------------------------------~~t~~~~~~~i~~~--~~l~~~~ 492 (599)
T TIGR01991 457 FQVDADGLLTVSAQE------------------------------------------QSTGVEQSIQVKPS--YGLSDEE 492 (599)
T ss_pred EEECCCCeEEEEEEE------------------------------------------CCCCcEEEEecccc--cCCCHHH
Confidence 999999999999853 22333344555543 3699999
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHHHHHHHhhHhhccCCHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHH
Q 004211 560 LSEAVEKEHQLVQQDLKMERTKDRKNALESYVYEMRDKISNIYRSFATESEREGISRNLRDTEEWLYEDGDDESENVYAE 639 (768)
Q Consensus 560 ~~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~t~~e~~~l~~~l~~~~~WL~~~g~~a~~~~~~~ 639 (768)
++++.+++.++..+|...++..+++|++|+|+|.++..+.+ +..++++++|+.+...+++.++||+++ ....+++
T Consensus 493 i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~l~~~----~~~~~~~ 567 (599)
T TIGR01991 493 IERMLKDSFKHAEEDMYARALAEQKVEAERILEALQAALAA-DGDLLSEDERAAIDAAMEALQKALQGD----DADAIKA 567 (599)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-hhccCCHHHHHHHHHHHHHHHHHHhcC----CHHHHHH
Confidence 99999999999999999999999999999999999988854 456899999999999999999999975 3578899
Q ss_pred HHHHHHHhHhHHHHh
Q 004211 640 RLEDLKKLVDPIEGR 654 (768)
Q Consensus 640 kl~~L~~~~~pi~~R 654 (768)
++++|++++.++..+
T Consensus 568 ~~~~l~~~~~~~~~~ 582 (599)
T TIGR01991 568 AIEALEEATDNFAAR 582 (599)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999888863
No 14
>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-95 Score=792.11 Aligned_cols=601 Identities=30% Similarity=0.520 Sum_probs=563.0
Q ss_pred CeEEEEEcCccceEEEEEEcCCceEEEeCCCCCccceEEEEeeCCceeecHHHHhhhhhCCcchHhHHHHhcCCCCCChH
Q 004211 1 MSVVGFDIGNENCVIAAVKQGGMLDVLLNDESKRETPTVVSFSEKQRFLGSAGAASAMMNPKSTISQVKRLLGRKFREDD 80 (768)
Q Consensus 1 m~viGID~GTt~s~va~~~~g~~~~ii~n~~~~r~~Ps~V~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~ 80 (768)
|.++|||||||+++|+++..|. ++++.|++|+|.+||+|+|.++++++|..|..+..++|.++++++||++|+.++++.
T Consensus 7 ~~aiGIdlGtT~s~v~v~~~~~-v~iian~~g~rttPs~vaf~~~e~~vg~~a~~qv~~np~ntv~~~krliGr~f~d~~ 85 (620)
T KOG0101|consen 7 SVAIGIDLGTTYSCVGVYQSGK-VEIIANDQGNRTTPSVVAFTDTERLIGDAAKNQVARNPDNTVFDAKRLIGRFFDDPE 85 (620)
T ss_pred cceeeEeccCccceeeeEcCCc-ceeeeccccCccccceeeecccccchhhhhhhhhhcCCcceeeehhhhcCccccchh
Confidence 4689999999999999999777 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhccCCceeeecCCCCEEEEEEecCceeEecHHHHHHHHHHHHHHHHHhhccCCCCeEEEEeCCCCCHHHHHHHHHH
Q 004211 81 VQKDLKLFPFETCESHDGGILIMLEYLGETHKFTPVQILGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDVQRRAYLDA 160 (768)
Q Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~A 160 (768)
++..+++|||.+....++.+.+.+.+.++.+.++|+++.+++|.+++..++.++|..+.++|+|||+||+..||+++.+|
T Consensus 86 v~~~~k~~pf~V~~~~~~~~~i~~~~~~~~~~f~peeiss~~L~klke~Ae~~Lg~~v~~aviTVPa~F~~~Qr~at~~A 165 (620)
T KOG0101|consen 86 VQSDMKLWPFKVISDQGGKPKIQVTYKGETKSFNPEEISSMVLTKLKETAEAYLGKTVKKAVVTVPAYFNDSQRAATKDA 165 (620)
T ss_pred hHhHhhcCCcccccccCCcceEEecccccceeeeeeeeeehhccccHHHHHHHhcCceeeEEEEecCCcCHHHHHHHHHH
Confidence 99999999999997777789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCceeeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCCchhhHHHHHH
Q 004211 161 ATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEVLS 240 (768)
Q Consensus 161 a~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~d~~l~ 240 (768)
+.+|||+++++|+||+|||++|++.+. .....+|||+|+||||||+|++.+.+|.+.|+++.++.++||.+||+.|+
T Consensus 166 ~~iaGl~vlrii~EPtAaalAygl~k~---~~~~~~VlI~DlGggtfdvs~l~i~gG~~~vkat~gd~~lGGedf~~~l~ 242 (620)
T KOG0101|consen 166 ALIAGLNVLRIINEPTAAALAYGLDKK---VLGERNVLIFDLGGGTFDVSVLSLEGGIFEVKATAGDTHLGGEDFDNKLV 242 (620)
T ss_pred HHhcCCceeeeecchHHHHHHhhcccc---ccceeeEEEEEcCCCceeeeeEEeccchhhhhhhcccccccchhhhHHHH
Confidence 999999999999999999999997764 25678899999999999999999999988999999999999999999999
Q ss_pred HHHHHHHhhhcccCccCChHHHHHHHHHHHHHhhhcCCCCeeeEEEeccccCcceEEEecHHHHHHHHHHHHHHHHHHHH
Q 004211 241 SYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANAEAPLNIECLMNEKDVKGFIRREEFEKLSSSLLERMRIPCQ 320 (768)
Q Consensus 241 ~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~~~i~~l~~~~d~~~~itr~~fe~~~~~~~~~i~~~i~ 320 (768)
+|+..+|.++++.++..|++++.||+.+||++|+.||....+.+.|++|+++.|+...|||.+|+.+|.+++.++..++.
T Consensus 243 ~h~~~ef~~k~~~d~~~n~r~l~rLR~a~E~aKr~LS~~~~~~i~vdsL~~g~d~~~~itrarfe~l~~dlf~~~~~~v~ 322 (620)
T KOG0101|consen 243 NHFAAEFKRKAGKDIGGNARALRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRSTLEPVE 322 (620)
T ss_pred HHHHHHHHHhhccccccchHHHHHHHHHHHHHHhhhcccccceeccchhhccccccceeehhhhhhhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCCCcCEEEEecCCCChHHHHHHHHhhc-CCCCCCcCCchhHHHhhHHHHhhHhcCC--ccccceEEeeccc
Q 004211 321 KALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLF-NREPGRTINASECVARGCALQCAMLSPQ--YCVREFEVQDSFP 397 (768)
Q Consensus 321 ~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~f-g~~v~~~~n~~eava~GAa~~a~~ls~~--~~~~~~~~~d~~~ 397 (768)
.+|+++++.+.+|+.|+||||++|+|.+|..++++| |+.+..++||||+||+|||++||.+++. ..+.++.+.|+.|
T Consensus 323 ~~L~da~~dk~~i~~vvlVGGstriPk~~~ll~d~f~~k~~~~sinpDeavA~GAavqaa~~~g~~~~~~~~l~lid~~p 402 (620)
T KOG0101|consen 323 KALKDAKLDKSDIDEVVLVGGSTRIPKVQKLLEDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSLNIQDLLLIDVAP 402 (620)
T ss_pred HHHHhhccCccCCceeEEecCcccchHHHHHHHHHhcccccccCCCHHHHHHhhHHHHhhhccCCccccccceeeeeccc
Confidence 999999999999999999999999999999999999 5888999999999999999999999874 2347899999999
Q ss_pred eeeEEEecCCCcccceeEEEecCCCCCCceeEEEEeecCc----eEEEEEEeccccCCCCCCCcceeEEecCCCCCCCCc
Q 004211 398 FSIGFSSEKGPICTFSNGVLLPKGQPFPSVKILTLHRSNG----FQLQAFYADQNELPSVVSPQISSFMIGPFQTSHAET 473 (768)
Q Consensus 398 ~~i~i~~~~~~~~~~~~~~l~~~~~~~p~~k~~~~~~~~~----~~i~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~ 473 (768)
.++||+..++ .+.++|++|+.+|++++.+|++..| +.|.+|.+ ++....+|..+|.|.++|+++++.|.
T Consensus 403 l~~gve~a~~-----~~~~~i~~~t~~P~~k~~~ftt~~dnQp~V~I~VyEg--er~~~kdn~~lg~feL~gippaprgv 475 (620)
T KOG0101|consen 403 LSLGVETAGG-----VFTVLIPRNTSIPTKKTQTFTTYSDNQPGVLIQVYEG--ERAMTKDNNLLGKFELTGIPPAPRGV 475 (620)
T ss_pred ccccccccCC-----cceeeeecccccceeeeeeeeeecCCCCceeEEEEec--cccccccccccceeeecCCCccccCC
Confidence 9999999988 8999999999999999988887544 55666443 46667999999999999999999999
Q ss_pred ceEEEEEEEcCCccEEEEeeeeeeeeeecccccccccccccccccccCCCCCCCCCCcccccccccceeeeeeeecccCC
Q 004211 474 ARVKVRVHLDLDGVVRVQSASLIEEFVDDSVRRESRDAHLTLEEDAKSDHTPATAIDPEINRKGKVLKRLEIPVNENVNG 553 (768)
Q Consensus 474 ~~i~v~~~~d~~Gil~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~i~~~~~~ 553 (768)
+.|+|+|.+|.+|+|.|++.+ +.+++...+.|++.. +
T Consensus 476 p~IevtfdiD~ngiL~Vta~d------------------------------------------~stgK~~~i~i~n~~-g 512 (620)
T KOG0101|consen 476 PQIEVTFDIDANGILNVTAVD------------------------------------------KSTGKENKITITNDK-G 512 (620)
T ss_pred cceeEEEecCCCcEEEEeecc------------------------------------------ccCCccceEEEeccc-c
Confidence 999999999999999999973 455666677777776 7
Q ss_pred CCCHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHHHHHHHhhHhhccCCHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 004211 554 GMTKTELSEAVEKEHQLVQQDLKMERTKDRKNALESYVYEMRDKISNIYRSFATESEREGISRNLRDTEEWLYEDGDDES 633 (768)
Q Consensus 554 ~ls~~e~~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~t~~e~~~l~~~l~~~~~WL~~~g~~a~ 633 (768)
.||.++++++....+.+..+|...+.+..++|.||+|+|.++..+++.- ..++++.+.++..+++++..||..+. .+.
T Consensus 513 rls~~~Ierm~~ea~~~~~~d~~~~~~v~~~~~le~~~f~~~~~~~~~~-~~i~~~~~~~~~~~~~~~i~wl~~~~-~~~ 590 (620)
T KOG0101|consen 513 RLSKEEIERMVQEAEKYKAEDEKQKDKVAAKNSLESYAFNMKATVEDEK-GKINEEDKQKILDKCNEVINWLDKNQ-LAE 590 (620)
T ss_pred eeehhhhhhhhhhhhhccccCHHHHHHHHHHhhHHHHHHhhhhhhhhhc-cccChhhhhhHHHHHHHHHHHhhhcc-ccc
Confidence 8999999999999999999999999999999999999999999998643 78999999999999999999999885 455
Q ss_pred HHHHHHHHHHHHHhHhHHHHhhHh
Q 004211 634 ENVYAERLEDLKKLVDPIEGRYKD 657 (768)
Q Consensus 634 ~~~~~~kl~~L~~~~~pi~~R~~e 657 (768)
+++|+.|+.+|+..+.||..++..
T Consensus 591 ~~e~e~k~~el~~~~~p~~~~~~~ 614 (620)
T KOG0101|consen 591 KEEFEHKQKELELVCNPIISKLYQ 614 (620)
T ss_pred ccHHHHHHHHHHhhccHHHHhhhc
Confidence 999999999999999999998654
No 15
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=100.00 E-value=7e-93 Score=829.18 Aligned_cols=594 Identities=38% Similarity=0.657 Sum_probs=535.5
Q ss_pred EEEEEcCccceEEEEEEcCCceEEEeCCCCCccceEEEEeeCCceeecHHHHhhhhhCCcchHhHHHHhcCCCCCChHHH
Q 004211 3 VVGFDIGNENCVIAAVKQGGMLDVLLNDESKRETPTVVSFSEKQRFLGSAGAASAMMNPKSTISQVKRLLGRKFREDDVQ 82 (768)
Q Consensus 3 viGID~GTt~s~va~~~~g~~~~ii~n~~~~r~~Ps~V~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~~~ 82 (768)
||||||||+||+||++.+|. ++++.|..|+|++||+|+|.+++++||..|.....++|.++++++|+|||+.++++.++
T Consensus 1 viGID~Gt~~~~va~~~~~~-~~ii~~~~~~~~~ps~v~~~~~~~~~G~~a~~~~~~~~~~~~~~~k~liG~~~~~~~~~ 79 (602)
T PF00012_consen 1 VIGIDLGTTNSKVAVFKNGK-PEIILNEEGKRKTPSVVSFSDNERLVGEDAKSQMIRNPKNTIYNLKRLIGRKFDDPDVQ 79 (602)
T ss_dssp EEEEEE-SSEEEEEEEETTE-EEEE--TTS-SSEESEEEEESSCEEETHHHHHTTTTSGGGEEESGGGTTTSBTTSHHHH
T ss_pred CEEEEeccCCEEEEEEEecc-ccccccccccccccceeeEeeecccCCcchhhhcccccccccccccccccccccccccc
Confidence 79999999999999999888 99999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCceeeecCCCCEEEEEEecCceeEecHHHHHHHHHHHHHHHHHhhccCCCCeEEEEeCCCCCHHHHHHHHHHHH
Q 004211 83 KDLKLFPFETCESHDGGILIMLEYLGETHKFTPVQILGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDVQRRAYLDAAT 162 (768)
Q Consensus 83 ~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~ 162 (768)
.+.+.+||.+...++|.+.+.+.+.|....++|+++++++|++|+..++.+++..+.++|||||++|++.||+++++||+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~~~~Aa~ 159 (602)
T PF00012_consen 80 KEKKKFPYKVVEDPDGKVYFEVDYDGKSKTYSPEELSAMILKYLKEMAEKYLGEKVTDVVITVPAYFTDEQRQALRDAAE 159 (602)
T ss_dssp HHHTTSSSEEEEETTTEEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHTSBEEEEEEEE-TT--HHHHHHHHHHHH
T ss_pred hhhhcccccccccccccccccccccccceeeeeecccccchhhhcccchhhcccccccceeeechhhhhhhhhccccccc
Confidence 99999999999998999999999988888999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCceeeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCCchhhHHHHHHHH
Q 004211 163 IAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEVLSSY 242 (768)
Q Consensus 163 ~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~d~~l~~~ 242 (768)
.|||++++||+||+|||++|++.+.. .+.++|||||||||+|+|++++.++.++++++.++..+||++||..|+++
T Consensus 160 ~agl~~~~li~Ep~Aaa~~y~~~~~~----~~~~vlv~D~Gggt~dvs~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~ 235 (602)
T PF00012_consen 160 LAGLNVLRLINEPTAAALAYGLERSD----KGKTVLVVDFGGGTFDVSVVEFSNGQFEVLATAGDNNLGGRDFDEALAEY 235 (602)
T ss_dssp HTT-EEEEEEEHHHHHHHHTTTTSSS----SEEEEEEEEEESSEEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHH
T ss_pred ccccccceeecccccccccccccccc----cccceeccccccceEeeeehhcccccccccccccccccccceecceeecc
Confidence 99999999999999999999887642 57899999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcccCccCChHHHHHHHHHHHHHhhhcCC--CCeeeEEEecccc-CcceEEEecHHHHHHHHHHHHHHHHHHH
Q 004211 243 FAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSA--NAEAPLNIECLMN-EKDVKGFIRREEFEKLSSSLLERMRIPC 319 (768)
Q Consensus 243 l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~--~~~~~~~i~~l~~-~~d~~~~itr~~fe~~~~~~~~~i~~~i 319 (768)
+.++|+.+++.++..+++++.+|+.+|+++|+.||. +.+..+.++++++ |.++.+.|||++|+++|.|+++++..+|
T Consensus 236 ~~~~~~~~~~~d~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~~~~~~~~~~~~~~~~~itr~~fe~l~~~~~~~~~~~i 315 (602)
T PF00012_consen 236 LLEKFKKKYKIDLRENPRAMARLLEAAEKAKEQLSSNDNTEITISIESLYDDGEDFSITITREEFEELCEPLLERIIEPI 315 (602)
T ss_dssp HHHHHHHHHSS-GTCSHHHHHHHHHHHHHHHHHTTTSSSSEEEEEEEEEETTTEEEEEEEEHHHHHHHTHHHHHHTHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeccccccccccccccc
Confidence 999999999999999999999999999999999999 6777888888887 8899999999999999999999999999
Q ss_pred HHHHHhCCCCCCCcCEEEEecCCCChHHHHHHHHhhcCCCCCCcCCchhHHHhhHHHHhhHhcCCccccceEEeecccee
Q 004211 320 QKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQCAMLSPQYCVREFEVQDSFPFS 399 (768)
Q Consensus 320 ~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~GAa~~a~~ls~~~~~~~~~~~d~~~~~ 399 (768)
+++|+.+++...+|+.|+|+||+||+|+|++.|++.||..+..++||++|||+|||++|+.+++.++++++.+.|++|++
T Consensus 316 ~~~l~~~~~~~~~i~~V~lvGG~sr~p~v~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~~~~~~~~~~~~~~d~~~~~ 395 (602)
T PF00012_consen 316 EKALKDAGLKKEDIDSVLLVGGSSRIPYVQEALKELFGKKISKSVNPDEAVARGAALYAAILSGSFRVKDIKIIDVTPFS 395 (602)
T ss_dssp HHHHHHTT--GGGESEEEEESGGGGSHHHHHHHHHHTTSEEB-SS-TTTHHHHHHHHHHHHHHTSCSSTSSCESEBESSE
T ss_pred ccccccccccccccceeEEecCcccchhhhhhhhhccccccccccccccccccccccchhhhcccccccccccccccccc
Confidence 99999999999999999999999999999999999999888899999999999999999999999999999999999999
Q ss_pred eEEEecCCCcccceeEEEecCCCCCCceeEEEEeecC----ceEEEEEEeccccCCCCCCCcceeEEecCCCCCCCCcce
Q 004211 400 IGFSSEKGPICTFSNGVLLPKGQPFPSVKILTLHRSN----GFQLQAFYADQNELPSVVSPQISSFMIGPFQTSHAETAR 475 (768)
Q Consensus 400 i~i~~~~~~~~~~~~~~l~~~~~~~p~~k~~~~~~~~----~~~i~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~ 475 (768)
|||++.++ .+.+++++|+++|..++..|.+.. .|.+.++|++... ..++..||+|.|.++++.+.|.++
T Consensus 396 ~~i~~~~~-----~~~~ii~~~t~iP~~~~~~~~t~~~~~~~i~i~i~~g~~~~--~~~~~~ig~~~i~~i~~~~~g~~~ 468 (602)
T PF00012_consen 396 IGIEVSNG-----KFSKIIPKNTPIPSKKSKSFKTVTDNQTSISIDIYEGESSS--FEDNKKIGSYTISGIPPAPKGKPK 468 (602)
T ss_dssp EEEEETTT-----EEEEEESTTEBSSEEEEEEEEESSTTCSEEEEEEEESSSSB--GGGSEEEEEEEEES-SSSSTTSSE
T ss_pred cccccccc-----ccccccccccccccccccccchhccccccccceeeeccccc--cccccccccccccccccccccccc
Confidence 99999887 789999999999999887776532 3788887766433 367799999999999988888899
Q ss_pred EEEEEEEcCCccEEEEeeeeeeeeeecccccccccccccccccccCCCCCCCCCCcccccccccceeeeeeeecccCCCC
Q 004211 476 VKVRVHLDLDGVVRVQSASLIEEFVDDSVRRESRDAHLTLEEDAKSDHTPATAIDPEINRKGKVLKRLEIPVNENVNGGM 555 (768)
Q Consensus 476 i~v~~~~d~~Gil~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~i~~~~~~~l 555 (768)
|+|+|++|.+|+|+|+++++. ......+.+.... .+
T Consensus 469 i~v~f~ld~~Gil~V~~~~~~------------------------------------------~~~~~~~~v~~~~--~~ 504 (602)
T PF00012_consen 469 IKVTFELDENGILSVEAAEVE------------------------------------------TGKEEEVTVKKKE--TL 504 (602)
T ss_dssp EEEEEEEETTSEEEEEEEETT------------------------------------------TTEEEEEEEESSS--SS
T ss_pred eeeEEeeeeeeehhhhhcccc------------------------------------------ccccccccccccc--cc
Confidence 999999999999999997521 1122233444443 38
Q ss_pred CHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHHHHHHHhhHhhccCCHHHHHHHHHHHHHHHHHHhhcCCCccHH
Q 004211 556 TKTELSEAVEKEHQLVQQDLKMERTKDRKNALESYVYEMRDKISNIYRSFATESEREGISRNLRDTEEWLYEDGDDESEN 635 (768)
Q Consensus 556 s~~e~~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~t~~e~~~l~~~l~~~~~WL~~~g~~a~~~ 635 (768)
+.++++.+.+++.++..+|+.++++.+++|+||+++|++|+.|++. ..+++++++ .+.++++.+||++++++++.+
T Consensus 505 ~~~~~~~~~~~~~~~~~~d~~~~~~~e~kn~lE~~i~~~r~~l~~~-~~~~~~~~~---~~~l~~~~~wl~~~~~~~~~~ 580 (602)
T PF00012_consen 505 SKEEIEELKKKLEEMDEEDEERRERAEAKNELESYIYELRDKLEED-KDFVSEEEK---KKKLKETSDWLEDNGEDADKE 580 (602)
T ss_dssp CHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC-GGGSTHHHH---HHHHHHHHHHHHHHTTTSHHH
T ss_pred ccccccccccccchhhhhhhhhhhccccHHHHHHHHHHHHHHHHhh-hccCCHHHH---HHHHHHHHHHHHhhccCCCHH
Confidence 9999999999999999999999999999999999999999999865 667777666 889999999999998899999
Q ss_pred HHHHHHHHHHHhHhHHHHhhH
Q 004211 636 VYAERLEDLKKLVDPIEGRYK 656 (768)
Q Consensus 636 ~~~~kl~~L~~~~~pi~~R~~ 656 (768)
+|++|+++|+++.+||..|++
T Consensus 581 e~~~kl~~L~~~~~~i~~r~~ 601 (602)
T PF00012_consen 581 EYKEKLEELKKVIEPIKKRYM 601 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999985
No 16
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=7e-92 Score=806.62 Aligned_cols=578 Identities=24% Similarity=0.409 Sum_probs=517.4
Q ss_pred eEEEEEcCccceEEEEEEcCCceEEEeCCCCCccceEEEEeeCCceeecHHHHhhhhhCCcchHhHHHHhcCCCCCChHH
Q 004211 2 SVVGFDIGNENCVIAAVKQGGMLDVLLNDESKRETPTVVSFSEKQRFLGSAGAASAMMNPKSTISQVKRLLGRKFREDDV 81 (768)
Q Consensus 2 ~viGID~GTt~s~va~~~~g~~~~ii~n~~~~r~~Ps~V~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~~ 81 (768)
.+||||||||||+||++.+|. ++++.|..|+|.+||+|+|.+++++||..|..+..++|.++++++|||||+.+.+ +
T Consensus 20 ~~iGIDlGTt~s~va~~~~g~-~~ii~n~~g~~~~PS~V~f~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d--~ 96 (616)
T PRK05183 20 LAVGIDLGTTNSLVATVRSGQ-AEVLPDEQGRVLLPSVVRYLEDGIEVGYEARANAAQDPKNTISSVKRFMGRSLAD--I 96 (616)
T ss_pred eEEEEEeccccEEEEEEECCE-EEEEEcCCCCeecCeEEEEcCCCEEEcHHHHHhhHhCchhhHHHHHHHhCCCchh--h
Confidence 479999999999999999988 8999999999999999999988899999999999999999999999999998876 3
Q ss_pred HhhhccCCceeeecCCCCEEEEEEecCceeEecHHHHHHHHHHHHHHHHHhhccCCCCeEEEEeCCCCCHHHHHHHHHHH
Q 004211 82 QKDLKLFPFETCESHDGGILIMLEYLGETHKFTPVQILGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDVQRRAYLDAA 161 (768)
Q Consensus 82 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa 161 (768)
+.....+||.+...++|.+.+.+.. ..++|+++++++|++|++.++.+++.++.++|||||+||++.||+++++||
T Consensus 97 ~~~~~~~~~~~~~~~~g~~~~~~~~----~~~~p~ei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa 172 (616)
T PRK05183 97 QQRYPHLPYQFVASENGMPLIRTAQ----GLKSPVEVSAEILKALRQRAEETLGGELDGAVITVPAYFDDAQRQATKDAA 172 (616)
T ss_pred hhhhhcCCeEEEecCCCceEEEecC----CeEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHH
Confidence 4455678999888878888877642 268999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCceeeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCCchhhHHHHHHH
Q 004211 162 TIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEVLSS 241 (768)
Q Consensus 162 ~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~d~~l~~ 241 (768)
++|||++++||+||+|||++|++.. ..+.++||||+||||||+|++++.++.++|+++.|+.++||++||..|++
T Consensus 173 ~~AGl~v~~li~EPtAAAlay~~~~-----~~~~~vlV~DlGGGT~DvSv~~~~~~~~evlat~gd~~lGG~d~D~~l~~ 247 (616)
T PRK05183 173 RLAGLNVLRLLNEPTAAAIAYGLDS-----GQEGVIAVYDLGGGTFDISILRLSKGVFEVLATGGDSALGGDDFDHLLAD 247 (616)
T ss_pred HHcCCCeEEEecchHHHHHHhhccc-----CCCCEEEEEECCCCeEEEEEEEeeCCEEEEEEecCCCCcCHHHHHHHHHH
Confidence 9999999999999999999999764 34678999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcccCccCChHHHHHHHHHHHHHhhhcCCCCeeeEEEeccccCcceEEEecHHHHHHHHHHHHHHHHHHHHH
Q 004211 242 YFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANAEAPLNIECLMNEKDVKGFIRREEFEKLSSSLLERMRIPCQK 321 (768)
Q Consensus 242 ~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~~~i~~l~~~~d~~~~itr~~fe~~~~~~~~~i~~~i~~ 321 (768)
|+.++|+ .+...+++++.+|+.+||++|+.||.+..+.+.+..+ ...|||++|+++|+|+++++..++++
T Consensus 248 ~~~~~~~----~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~------~~~itr~efe~l~~~l~~~~~~~i~~ 317 (616)
T PRK05183 248 WILEQAG----LSPRLDPEDQRLLLDAARAAKEALSDADSVEVSVALW------QGEITREQFNALIAPLVKRTLLACRR 317 (616)
T ss_pred HHHHHcC----CCcCCCHHHHHHHHHHHHHHHHhcCCCceEEEEEecC------CCeEcHHHHHHHHHHHHHHHHHHHHH
Confidence 9998764 4445688999999999999999999999888888532 23599999999999999999999999
Q ss_pred HHHhCCCCCCCcCEEEEecCCCChHHHHHHHHhhcCCCCCCcCCchhHHHhhHHHHhhHhcCCccccceEEeeccceeeE
Q 004211 322 ALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQCAMLSPQYCVREFEVQDSFPFSIG 401 (768)
Q Consensus 322 ~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~GAa~~a~~ls~~~~~~~~~~~d~~~~~i~ 401 (768)
+|+++++...+|+.|+||||+||+|+|++.|+++||..+..++|||+|||+|||++|+++++.+..+++.+.|++|++||
T Consensus 318 ~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg~~~~~~~npdeaVA~GAAi~a~~l~~~~~~~~~~l~dv~p~slg 397 (616)
T PRK05183 318 ALRDAGVEADEVKEVVMVGGSTRVPLVREAVGEFFGRTPLTSIDPDKVVAIGAAIQADILAGNKPDSDMLLLDVIPLSLG 397 (616)
T ss_pred HHHHcCCCcccCCEEEEECCcccChHHHHHHHHHhccCcCcCCCchHHHHHHHHHHHHHhccccccCceEEEeecccccc
Confidence 99999999999999999999999999999999999987778999999999999999999999887889999999999999
Q ss_pred EEecCCCcccceeEEEecCCCCCCceeEEEEee--cCceEEEEEEeccccCCCCCCCcceeEEecCCCCCCCCcceEEEE
Q 004211 402 FSSEKGPICTFSNGVLLPKGQPFPSVKILTLHR--SNGFQLQAFYADQNELPSVVSPQISSFMIGPFQTSHAETARVKVR 479 (768)
Q Consensus 402 i~~~~~~~~~~~~~~l~~~~~~~p~~k~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~i~v~ 479 (768)
+++.++ .+.+|||+|+++|++++.+|++ +++.++.+.+..+++..+.+|..||+|.|.++++.+.|.++|+|+
T Consensus 398 i~~~~g-----~~~~ii~r~t~iP~~~~~~~~t~~d~q~~v~i~v~qGe~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~ 472 (616)
T PRK05183 398 LETMGG-----LVEKIIPRNTTIPVARAQEFTTFKDGQTAMAIHVVQGERELVADCRSLARFELRGIPPMAAGAARIRVT 472 (616)
T ss_pred ceecCC-----eEEEEEeCCCcccccccEEEEeccCCCeEEEEEEecccccccccccEEEEEEeCCCCCCCCCCccEEEE
Confidence 998876 7889999999999999888875 444455544333444445788999999999999998888999999
Q ss_pred EEEcCCccEEEEeeeeeeeeeecccccccccccccccccccCCCCCCCCCCcccccccccceeeeeeeecccCCCCCHHH
Q 004211 480 VHLDLDGVVRVQSASLIEEFVDDSVRRESRDAHLTLEEDAKSDHTPATAIDPEINRKGKVLKRLEIPVNENVNGGMTKTE 559 (768)
Q Consensus 480 ~~~d~~Gil~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~i~~~~~~~ls~~e 559 (768)
|++|.||+|+|++.+ +.++++..+.|... .+|++++
T Consensus 473 f~~d~~Gil~V~a~~------------------------------------------~~~~~~~~~~i~~~--~~ls~~~ 508 (616)
T PRK05183 473 FQVDADGLLSVTAME------------------------------------------KSTGVEASIQVKPS--YGLTDDE 508 (616)
T ss_pred EEECCCCeEEEEEEE------------------------------------------cCCCcEEEeccccc--ccCCHHH
Confidence 999999999999853 23344455666544 3699999
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHHHHHHHhhHhhccCCHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHH
Q 004211 560 LSEAVEKEHQLVQQDLKMERTKDRKNALESYVYEMRDKISNIYRSFATESEREGISRNLRDTEEWLYEDGDDESENVYAE 639 (768)
Q Consensus 560 ~~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~t~~e~~~l~~~l~~~~~WL~~~g~~a~~~~~~~ 639 (768)
++++.+++.++..+|+..+++.+++|++|+|+|.++..+.+ ....+++++|+.+...+++.++||..+ +...|++
T Consensus 509 i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~l~~~----d~~~~~~ 583 (616)
T PRK05183 509 IARMLKDSMSHAEEDMQARALAEQKVEAERVLEALQAALAA-DGDLLSAAERAAIDAAMAALREVAQGD----DADAIEA 583 (616)
T ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH-hhccCCHHHHHHHHHHHHHHHHHHhcC----CHHHHHH
Confidence 99999999999999999999999999999999999999964 346789999999999999999999754 5679999
Q ss_pred HHHHHHHhHhHHHHhh
Q 004211 640 RLEDLKKLVDPIEGRY 655 (768)
Q Consensus 640 kl~~L~~~~~pi~~R~ 655 (768)
++++|++++.++..+.
T Consensus 584 ~~~~l~~~~~~~~~~~ 599 (616)
T PRK05183 584 AIKALDKATQEFAARR 599 (616)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998743
No 17
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=2.4e-86 Score=753.31 Aligned_cols=551 Identities=23% Similarity=0.334 Sum_probs=470.7
Q ss_pred eEEEEEcCccceEEEEEEcCCceEEEeCCCCCccceEEEEeeCCceeecHHHHhhhhhCCcchHhHHHHhcCCCCCC---
Q 004211 2 SVVGFDIGNENCVIAAVKQGGMLDVLLNDESKRETPTVVSFSEKQRFLGSAGAASAMMNPKSTISQVKRLLGRKFRE--- 78 (768)
Q Consensus 2 ~viGID~GTt~s~va~~~~g~~~~ii~n~~~~r~~Ps~V~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~--- 78 (768)
.+||||||||||+||++.+|. ++++.|..|+|.+||+|+|.++++++|..| +++++||+||+.+.+
T Consensus 20 ~viGIDlGTT~S~va~~~~~~-~~ii~n~~g~~~tPS~V~f~~~~~~vG~~A----------ti~~~KrliG~~~~~~~~ 88 (595)
T PRK01433 20 IAVGIDFGTTNSLIAIATNRK-VKVIKSIDDKELIPTTIDFTSNNFTIGNNK----------GLRSIKRLFGKTLKEILN 88 (595)
T ss_pred eEEEEEcCcccEEEEEEeCCe-eEEEECCCCCeecCeEEEEcCCCEEECchh----------hHHHHHHHhCCCchhhcc
Confidence 389999999999999998777 999999999999999999998889999987 789999999999865
Q ss_pred -hHHHhhhccCCceeeecCCCCEEEEEEecCceeEecHHHHHHHHHHHHHHHHHhhccCCCCeEEEEeCCCCCHHHHHHH
Q 004211 79 -DDVQKDLKLFPFETCESHDGGILIMLEYLGETHKFTPVQILGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDVQRRAY 157 (768)
Q Consensus 79 -~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l 157 (768)
+.+....+. .....++... +.+.+ ..++|+++++++|++|++.|+.++|.++.++|||||+||++.||+++
T Consensus 89 ~~~~~~~~k~----~~~~~~~~~~--~~~~~--~~~speei~a~iL~~lk~~ae~~lg~~v~~aVITVPa~f~~~qR~a~ 160 (595)
T PRK01433 89 TPALFSLVKD----YLDVNSSELK--LNFAN--KQLRIPEIAAEIFIYLKNQAEEQLKTNITKAVITVPAHFNDAARGEV 160 (595)
T ss_pred chhhHhhhhh----eeecCCCeeE--EEECC--EEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHH
Confidence 222221111 1111223333 33333 57999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCceeeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCCchhhHHH
Q 004211 158 LDAATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDE 237 (768)
Q Consensus 158 ~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~d~ 237 (768)
++||++|||+++++++||+|||++|++.. ....++||||+||||||+|++++.++.++|+++.|+.++||++||.
T Consensus 161 ~~Aa~~AGl~v~~li~EPtAAAlay~~~~-----~~~~~vlV~DlGGGT~DvSi~~~~~~~~~V~at~gd~~lGG~d~D~ 235 (595)
T PRK01433 161 MLAAKIAGFEVLRLIAEPTAAAYAYGLNK-----NQKGCYLVYDLGGGTFDVSILNIQEGIFQVIATNGDNMLGGNDIDV 235 (595)
T ss_pred HHHHHHcCCCEEEEecCcHHHHHHHhccc-----CCCCEEEEEECCCCcEEEEEEEEeCCeEEEEEEcCCcccChHHHHH
Confidence 99999999999999999999999999765 2356899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcccCccCChHHHHHHHHHHHHHhhhcCCCCeeeEEEeccccCcceEEEecHHHHHHHHHHHHHHHHH
Q 004211 238 VLSSYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANAEAPLNIECLMNEKDVKGFIRREEFEKLSSSLLERMRI 317 (768)
Q Consensus 238 ~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~~~i~~l~~~~d~~~~itr~~fe~~~~~~~~~i~~ 317 (768)
+|++|+..+|.. ..+.+ .++.||++|+.||.+..... ..+.|||++|+++|+|+++++..
T Consensus 236 ~l~~~~~~~~~~------~~~~~----~~~~~ekaK~~LS~~~~~~~----------~~~~itr~efe~l~~~l~~~~~~ 295 (595)
T PRK01433 236 VITQYLCNKFDL------PNSID----TLQLAKKAKETLTYKDSFNN----------DNISINKQTLEQLILPLVERTIN 295 (595)
T ss_pred HHHHHHHHhcCC------CCCHH----HHHHHHHHHHhcCCCccccc----------ceEEEcHHHHHHHHHHHHHHHHH
Confidence 999999988742 22222 23469999999998764321 16789999999999999999999
Q ss_pred HHHHHHHhCCCCCCCcCEEEEecCCCChHHHHHHHHhhcCCCCCCcCCchhHHHhhHHHHhhHhcCCccccceEEeeccc
Q 004211 318 PCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQCAMLSPQYCVREFEVQDSFP 397 (768)
Q Consensus 318 ~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~GAa~~a~~ls~~~~~~~~~~~d~~~ 397 (768)
+++++|++++ ..+|+.|+||||+||+|+|+++|+++||.++..+.||++|||+|||++|+++++.+ .++.+.|++|
T Consensus 296 ~i~~~L~~a~--~~~Id~ViLvGGssriP~v~~~l~~~f~~~~~~~~npdeaVA~GAAi~a~~l~~~~--~~~~l~Dv~p 371 (595)
T PRK01433 296 IAQECLEQAG--NPNIDGVILVGGATRIPLIKDELYKAFKVDILSDIDPDKAVVWGAALQAENLIAPH--TNSLLIDVVP 371 (595)
T ss_pred HHHHHHhhcC--cccCcEEEEECCcccChhHHHHHHHHhCCCceecCCchHHHHHHHHHHHHHhhCCc--cceEEEEecc
Confidence 9999999998 56899999999999999999999999998888899999999999999999998753 5789999999
Q ss_pred eeeEEEecCCCcccceeEEEecCCCCCCceeEEEEee--cCc--eEEEEEEeccccCCCCCCCcceeEEecCCCCCCCCc
Q 004211 398 FSIGFSSEKGPICTFSNGVLLPKGQPFPSVKILTLHR--SNG--FQLQAFYADQNELPSVVSPQISSFMIGPFQTSHAET 473 (768)
Q Consensus 398 ~~i~i~~~~~~~~~~~~~~l~~~~~~~p~~k~~~~~~--~~~--~~i~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~ 473 (768)
++||+++.++ .+.+||+||+++|++++..|++ +++ +.|.++++ ++....+|..||+|.|.|+++++.|.
T Consensus 372 ~slgi~~~~g-----~~~~ii~rnt~iP~~~~~~f~t~~d~q~~v~i~v~qG--e~~~~~~n~~lg~~~l~~i~~~~~g~ 444 (595)
T PRK01433 372 LSLGMELYGG-----IVEKIIMRNTPIPISVVKEFTTYADNQTGIQFHILQG--EREMAADCRSLARFELKGLPPMKAGS 444 (595)
T ss_pred cceEEEecCC-----EEEEEEECCCcccceeeEEeEeecCCCeEEEEEEEec--cccccCCCcEEEEEEEcCCCCCCCCC
Confidence 9999999877 7899999999999998887776 344 44555443 44445789999999999999998888
Q ss_pred ceEEEEEEEcCCccEEEEeeeeeeeeeecccccccccccccccccccCCCCCCCCCCcccccccccceeeeeeeecccCC
Q 004211 474 ARVKVRVHLDLDGVVRVQSASLIEEFVDDSVRRESRDAHLTLEEDAKSDHTPATAIDPEINRKGKVLKRLEIPVNENVNG 553 (768)
Q Consensus 474 ~~i~v~~~~d~~Gil~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~i~~~~~~ 553 (768)
++|+|+|.+|.||+|+|++.+ +.++++..+.|... .
T Consensus 445 ~~i~vtf~id~~Gil~V~a~~------------------------------------------~~t~~~~~~~i~~~--~ 480 (595)
T PRK01433 445 IRAEVTFAIDADGILSVSAYE------------------------------------------KISNTSHAIEVKPN--H 480 (595)
T ss_pred ccEEEEEEECCCCcEEEEEEE------------------------------------------cCCCcEEEEEecCC--C
Confidence 999999999999999999963 33455566677644 3
Q ss_pred CCCHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHHHHHHHhhHhhccCCHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 004211 554 GMTKTELSEAVEKEHQLVQQDLKMERTKDRKNALESYVYEMRDKISNIYRSFATESEREGISRNLRDTEEWLYEDGDDES 633 (768)
Q Consensus 554 ~ls~~e~~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~t~~e~~~l~~~l~~~~~WL~~~g~~a~ 633 (768)
+||+++++++.++..++..+|...++..+++|.+|+++|.++..+++ +...+++++|+.+...+++.++||..+ .
T Consensus 481 ~ls~~ei~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~i~~~~~~~~~~l~~~----~ 555 (595)
T PRK01433 481 GIDKTEIDIMLENAYKNAKIDYTTRLLQEAVIEAEALIFNIERAIAE-LTTLLSESEISIINSLLDNIKEAVHAR----D 555 (595)
T ss_pred CCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-hhccCCHHHHHHHHHHHHHHHHHHhcC----C
Confidence 59999999999999999999999999999999999999999999965 566789999999999999999999743 4
Q ss_pred HHHHHHHHHHHHHhHhH-HHHhhH
Q 004211 634 ENVYAERLEDLKKLVDP-IEGRYK 656 (768)
Q Consensus 634 ~~~~~~kl~~L~~~~~p-i~~R~~ 656 (768)
...+++++++|++...+ +..|..
T Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~ 579 (595)
T PRK01433 556 IILINNSIKEFKSKIKKSMDTKLN 579 (595)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55777888888877777 444433
No 18
>KOG0102 consensus Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-88 Score=706.39 Aligned_cols=589 Identities=27% Similarity=0.465 Sum_probs=538.9
Q ss_pred eEEEEEcCccceEEEEEEcCCceEEEeCCCCCccceEEEEee-CCceeecHHHHhhhhhCCcchHhHHHHhcCCCCCChH
Q 004211 2 SVVGFDIGNENCVIAAVKQGGMLDVLLNDESKRETPTVVSFS-EKQRFLGSAGAASAMMNPKSTISQVKRLLGRKFREDD 80 (768)
Q Consensus 2 ~viGID~GTt~s~va~~~~g~~~~ii~n~~~~r~~Ps~V~~~-~~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~ 80 (768)
+|+|||+|||+|+++++.++. +.++.|..|.|.+||+|+|. +.++++|-.|+.++..||.++++.-||+||+.+.++.
T Consensus 28 ~vigidlgttnS~va~meg~~-~kiienaegqrtTpsvva~~kdge~Lvg~~akrqav~n~~ntffatKrligRrf~d~e 106 (640)
T KOG0102|consen 28 KVIGIDLGTTNSCVAVMEGKK-PKIIENAEGQRTTPSVVAFTKDGERLVGMPAKRQAVTNPENTFFATKRLIGRRFDDPE 106 (640)
T ss_pred ceeeEeeeccceeEEEEeCCC-ceEeecccccccCCceEEEeccccEEecchhhhhhccCCCceEEEehhhhhhhccCHH
Confidence 489999999999999999998 78999999999999999995 5589999999999999999999999999999999999
Q ss_pred HHhhhccCCceeeecCCCCEEEEEEecCceeEecHHHHHHHHHHHHHHHHHhhccCCCCeEEEEeCCCCCHHHHHHHHHH
Q 004211 81 VQKDLKLFPFETCESHDGGILIMLEYLGETHKFTPVQILGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDVQRRAYLDA 160 (768)
Q Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~A 160 (768)
++.+++..||+++..+||...++. . ...++|.++.+++|.+++..|+.+++..+..+|+|||+||++.||+++++|
T Consensus 107 vq~~~k~vpyKiVk~~ngdaw~e~--~--G~~~spsqig~~vl~kmk~tae~yl~~~v~~avvtvpAyfndsqRqaTkda 182 (640)
T KOG0102|consen 107 VQKDIKQVPYKIVKASNGDAWVEA--R--GKQYSPSQIGAFVLMKMKETAEAYLGKKVKNAVITVPAYFNDSQRQATKDA 182 (640)
T ss_pred HHHHHHhCCcceEEccCCcEEEEe--C--CeEecHHHHHHHHHHHHHHHHHHHcCchhhheeeccHHHHhHHHHHHhHhh
Confidence 999999999999999999988876 3 478999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCceeeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCCchhhHHHHHH
Q 004211 161 ATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEVLS 240 (768)
Q Consensus 161 a~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~d~~l~ 240 (768)
.++||+++++++|||+|||++|++.+. ....++|||+||||||++++.+.+|.|+|.++.+|.++||.+||..+.
T Consensus 183 g~iagl~vlrvineptaaalaygld~k-----~~g~iaV~dLgggtfdisilei~~gvfevksTngdtflggedfd~~~~ 257 (640)
T KOG0102|consen 183 GQIAGLNVLRVINEPTAAALAYGLDKK-----EDGVIAVFDLGGGTFDISILEIEDGVFEVKSTNGDTHLGGEDFDNALV 257 (640)
T ss_pred hhhccceeeccCCccchhHHhhccccc-----CCCceEEEEcCCceeeeeeehhccceeEEEeccCccccChhHHHHHHH
Confidence 999999999999999999999999863 368899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcccCccCChHHHHHHHHHHHHHhhhcCCCCeeeEEEeccccC----cceEEEecHHHHHHHHHHHHHHHH
Q 004211 241 SYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANAEAPLNIECLMNE----KDVKGFIRREEFEKLSSSLLERMR 316 (768)
Q Consensus 241 ~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~~~i~~l~~~----~d~~~~itr~~fe~~~~~~~~~i~ 316 (768)
+|+...|+...++++..+.+++.||.+++|++|+.||...++.++++.+..+ ..+++.+||.+|++++.++++|.+
T Consensus 258 ~~~v~~fk~~~gidl~kd~~a~qrl~eaaEkaKielSs~~~tei~lp~iTada~gpkh~~i~~tr~efe~~v~~lI~Rti 337 (640)
T KOG0102|consen 258 RFIVSEFKKEEGIDLTKDRMALQRLREAAEKAKIELSSRQQTEINLPFITADASGPKHLNIELTRGEFEELVPSLIARTI 337 (640)
T ss_pred HHHHHhhhcccCcchhhhHHHHHHHHHHHHhhhhhhhhcccceeccceeeccCCCCeeEEEeecHHHHHHhhHHHHHhhh
Confidence 9999999999999999999999999999999999999999999999988766 468899999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCcCEEEEecCCCChHHHHHHHHhhcCCCCCCcCCchhHHHhhHHHHhhHhcCCccccceEEeecc
Q 004211 317 IPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQCAMLSPQYCVREFEVQDSF 396 (768)
Q Consensus 317 ~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~GAa~~a~~ls~~~~~~~~~~~d~~ 396 (768)
.+++++|++|++..+||+.|+|+||++|+|.+++.+++.||......+||||+||.|||++++.+++. |++..+.|++
T Consensus 338 ~p~~~aL~dA~~~~~di~EV~lvggmtrmpkv~s~V~e~fgk~p~~~vnPdeava~GAaiqggvl~ge--VkdvlLLdVt 415 (640)
T KOG0102|consen 338 EPCKKALRDASLSSSDINEVILVGGMTRMPKVQSTVKELFGKGPSKGVNPDEAVAGGAAIQGGVLSGE--VKDVLLLDVT 415 (640)
T ss_pred hHHHHHHHhccCChhhhhhhhhhcchhhcHHHHHHHHHHhCCCCCCCcCCcchhccchhhccchhhcc--ccceeeeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999986 8899999999
Q ss_pred ceeeEEEecCCCcccceeEEEecCCCCCCceeEEEEeec--Cc--eEEEEEEeccccCCCCCCCcceeEEecCCCCCCCC
Q 004211 397 PFSIGFSSEKGPICTFSNGVLLPKGQPFPSVKILTLHRS--NG--FQLQAFYADQNELPSVVSPQISSFMIGPFQTSHAE 472 (768)
Q Consensus 397 ~~~i~i~~~~~~~~~~~~~~l~~~~~~~p~~k~~~~~~~--~~--~~i~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~ 472 (768)
|+++|+++-++ -+..|+++++.+|++++-.|.+. ++ ++|.++++ ++....+|..+|+|.+.|+||+|.|
T Consensus 416 pLsLgietlgg-----vft~Li~rnttIptkksqvfstaadgqt~V~ikv~qg--ere~~~dnk~lG~f~l~gipp~pRg 488 (640)
T KOG0102|consen 416 PLSLGIETLGG-----VFTKLIPRNTTIPTKKSQVFSTAADGQTQVEIKVFQG--EREMVNDNKLLGSFILQGIPPAPRG 488 (640)
T ss_pred hHHHHHHhhhh-----hheecccCCcccCchhhhheeecccCCceEEEEeeec--hhhhhccCcccceeeecccCCCCCC
Confidence 99999999988 89999999999999999888874 33 55565544 4555689999999999999999999
Q ss_pred cceEEEEEEEcCCccEEEEeeeeeeeeeecccccccccccccccccccCCCCCCCCCCcccccccccceeeeeeeecccC
Q 004211 473 TARVKVRVHLDLDGVVRVQSASLIEEFVDDSVRRESRDAHLTLEEDAKSDHTPATAIDPEINRKGKVLKRLEIPVNENVN 552 (768)
Q Consensus 473 ~~~i~v~~~~d~~Gil~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~i~~~~~ 552 (768)
.++|.|+|.+|.+||++|++.. |.+.+..++++....
T Consensus 489 vpqieVtfDIdanGI~~vsA~d------------------------------------------k~t~K~qsi~i~~sg- 525 (640)
T KOG0102|consen 489 VPQIEVTFDIDANGIGTVSAKD------------------------------------------KGTGKSQSITIASSG- 525 (640)
T ss_pred CCceeEEEeecCCceeeeehhh------------------------------------------cccCCccceEEeecC-
Confidence 9999999999999999999963 445666777777664
Q ss_pred CCCCHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHHHHHHHhhHhhccCCHHHHHHHHHHHHHHHHHHhhcCCCc
Q 004211 553 GGMTKTELSEAVEKEHQLVQQDLKMERTKDRKNALESYVYEMRDKISNIYRSFATESEREGISRNLRDTEEWLYEDGDDE 632 (768)
Q Consensus 553 ~~ls~~e~~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~t~~e~~~l~~~l~~~~~WL~~~g~~a 632 (768)
+||.++++.+.+..+.+...|+.++++.+..|..|+++|.....+.+ |.+..+.++..+|...+....+.+-.- ...
T Consensus 526 -gLs~~ei~~mV~eaer~~~~d~~~~~~ie~~nka~s~~~~te~~~~~-~~~~~~~~~~~~i~~~i~~l~~~~~~~-~~~ 602 (640)
T KOG0102|consen 526 -GLSKDEIELMVGEAERLASTDKEKREAIETKNKADSIIYDTEKSLKE-FEEKIPAEECEKLEEKISDLRELVANK-DSG 602 (640)
T ss_pred -CCCHHHHHHHHHHHHHHHhhhHHHHHHhhhhcchhheecCchhhhhh-hhhhCcHHHHHHHHHHHHHHHHHHhhh-ccC
Confidence 69999999999999999999999999999999999999999888854 667777777789999999888887532 122
Q ss_pred cHHHHHHHHHHHHHhHhHHHHhh
Q 004211 633 SENVYAERLEDLKKLVDPIEGRY 655 (768)
Q Consensus 633 ~~~~~~~kl~~L~~~~~pi~~R~ 655 (768)
+.+....+...|+....|+..-+
T Consensus 603 ~~~~~k~~~~~l~q~~lkl~es~ 625 (640)
T KOG0102|consen 603 DMEEIKKAMSALQQASLKLFESA 625 (640)
T ss_pred ChhhHHHHHHHHHHhhhHHHHHH
Confidence 23667777777777766666533
No 19
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.6e-85 Score=737.50 Aligned_cols=569 Identities=30% Similarity=0.473 Sum_probs=520.2
Q ss_pred eEEEEEcCccceEEEEEEcCCceEEEeCCCCCccceEEEEeeCCc-eeecHHHHhhhhhCCcchHhHHHHhcCCCCCChH
Q 004211 2 SVVGFDIGNENCVIAAVKQGGMLDVLLNDESKRETPTVVSFSEKQ-RFLGSAGAASAMMNPKSTISQVKRLLGRKFREDD 80 (768)
Q Consensus 2 ~viGID~GTt~s~va~~~~g~~~~ii~n~~~~r~~Ps~V~~~~~~-~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~ 80 (768)
.+||||||||||+||++.+++.+.++.|..|.|.+||+|+|..++ +++|..|+.++..+|.+++..+||++|+...
T Consensus 6 ~~iGIDlGTTNS~vA~~~~~~~~~vi~n~~g~r~~PSvv~f~~~~~~~vG~~A~~q~~~~p~~t~~~~kr~~G~~~~--- 82 (579)
T COG0443 6 KAIGIDLGTTNSVVAVMRGGGLPKVIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAVDNPENTIFSIKRKIGRGSN--- 82 (579)
T ss_pred eEEEEEcCCCcEEEEEEeCCCCceEecCCCCCcccceEEEECCCCCEEecHHHHHHhhhCCcceEEEEehhcCCCCC---
Confidence 489999999999999999883399999999999999999999765 9999999999999999999999999998621
Q ss_pred HHhhhccCCceeeecCCCCEEEEEEecCceeEecHHHHHHHHHHHHHHHHHhhccCCCCeEEEEeCCCCCHHHHHHHHHH
Q 004211 81 VQKDLKLFPFETCESHDGGILIMLEYLGETHKFTPVQILGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDVQRRAYLDA 160 (768)
Q Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~A 160 (768)
+. .+.+...| +.++|+++++++|.+|++.++.+++..+.++|||||+||++.||+++++|
T Consensus 83 -----------------~~-~~~~~~~~--~~~~~eeisa~~L~~lk~~ae~~lg~~v~~~VItVPayF~d~qR~at~~A 142 (579)
T COG0443 83 -----------------GL-KISVEVDG--KKYTPEEISAMILTKLKEDAEAYLGEKVTDAVITVPAYFNDAQRQATKDA 142 (579)
T ss_pred -----------------CC-cceeeeCC--eeeCHHHHHHHHHHHHHHHHHHhhCCCcceEEEEeCCCCCHHHHHHHHHH
Confidence 11 11122223 57999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCceeeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCCchhhHHHHHH
Q 004211 161 ATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEVLS 240 (768)
Q Consensus 161 a~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~d~~l~ 240 (768)
+++|||+++++++||+|||++|+.... .+.+|||||+||||||+|++++.+|.++|++++|+.++||++||.+|.
T Consensus 143 ~~iaGl~vlrlinEPtAAAlayg~~~~-----~~~~vlV~DlGGGTfDvSll~~~~g~~ev~at~gd~~LGGddfD~~l~ 217 (579)
T COG0443 143 ARIAGLNVLRLINEPTAAALAYGLDKG-----KEKTVLVYDLGGGTFDVSLLEIGDGVFEVLATGGDNHLGGDDFDNALI 217 (579)
T ss_pred HHHcCCCeEEEecchHHHHHHhHhccC-----CCcEEEEEEcCCCCEEEEEEEEcCCEEEEeecCCCcccCchhHHHHHH
Confidence 999999999999999999999998773 678999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcccCccCChHHHHHHHHHHHHHhhhcCCCCeeeEEEeccccCcceEEEecHHHHHHHHHHHHHHHHHHHH
Q 004211 241 SYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANAEAPLNIECLMNEKDVKGFIRREEFEKLSSSLLERMRIPCQ 320 (768)
Q Consensus 241 ~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~~~i~~l~~~~d~~~~itr~~fe~~~~~~~~~i~~~i~ 320 (768)
+|+..+|..++++++..+++++.||+.+|+++|+.||.+.++.++++++..+.++...|||++||.++.+++.++..++.
T Consensus 218 ~~~~~~f~~~~~~d~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~~~~~~~~~~~~~~ltR~~~E~l~~dll~r~~~~~~ 297 (579)
T COG0443 218 DYLVMEFKGKGGIDLRSDKAALQRLREAAEKAKIELSSATQTSINLPSIGGDIDLLKELTRAKFEELILDLLERTIEPVE 297 (579)
T ss_pred HHHHHHhhccCCccccccHHHHHHHHHHHHHHHHHcccccccccchhhccccchhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999887777889999999999999999999999999
Q ss_pred HHHHhCCCCCCCcCEEEEecCCCChHHHHHHHHhhcCCCCCCcCCchhHHHhhHHHHhhHhcCCccccceEEeeccceee
Q 004211 321 KALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQCAMLSPQYCVREFEVQDSFPFSI 400 (768)
Q Consensus 321 ~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~GAa~~a~~ls~~~~~~~~~~~d~~~~~i 400 (768)
++|.+++++..+|+.|+|+||++|||.|++.++++||.++..++|||++||.|||++|+.+++... ++.+.|++|+++
T Consensus 298 ~al~~a~l~~~~I~~VilvGGstriP~V~~~v~~~f~~~~~~~inpdeava~GAa~qa~~l~~~~~--d~ll~Dv~plsl 375 (579)
T COG0443 298 QALKDAGLEKSDIDLVILVGGSTRIPAVQELVKEFFGKEPEKSINPDEAVALGAAIQAAVLSGEVP--DVLLLDVIPLSL 375 (579)
T ss_pred HHHHHcCCChhhCceEEEccceeccHHHHHHHHHHhCccccccCCccHHHHHHHHHHHHhhcCccc--CceEEeeeeecc
Confidence 999999999999999999999999999999999999999999999999999999999999998754 899999999999
Q ss_pred EEEecCCCcccceeEEEecCCCCCCceeEEEEeecC--ceEEEEEEeccccCCCCCCCcceeEEecCCCCCCCCcceEEE
Q 004211 401 GFSSEKGPICTFSNGVLLPKGQPFPSVKILTLHRSN--GFQLQAFYADQNELPSVVSPQISSFMIGPFQTSHAETARVKV 478 (768)
Q Consensus 401 ~i~~~~~~~~~~~~~~l~~~~~~~p~~k~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~i~v 478 (768)
|+++.++ .+..++++|+.+|.++.-.|.+.. +-.+.+.+..+++....+|..+|.|.+.++++.+.|.+.|.|
T Consensus 376 gie~~~~-----~~~~ii~rn~~iP~~~~~~f~t~~d~q~~~~i~v~qge~~~~~~~~~lg~f~l~~i~~~~~g~~~i~v 450 (579)
T COG0443 376 GIETLGG-----VRTPIIERNTTIPVKKSQEFSTAADGQTAVAIHVFQGEREMAADNKSLGRFELDGIPPAPRGVPQIEV 450 (579)
T ss_pred ccccCcc-----hhhhHHhcCCCCCcccceEEEeecCCCceeEEEEEecchhhcccCceeEEEECCCCCCCCCCCCceEE
Confidence 9999987 799999999999999988887644 444555444555555689999999999999999999999999
Q ss_pred EEEEcCCccEEEEeeeeeeeeeecccccccccccccccccccCCCCCCCCCCcccccccccceeeeeeeecccCCCCCHH
Q 004211 479 RVHLDLDGVVRVQSASLIEEFVDDSVRRESRDAHLTLEEDAKSDHTPATAIDPEINRKGKVLKRLEIPVNENVNGGMTKT 558 (768)
Q Consensus 479 ~~~~d~~Gil~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~i~~~~~~~ls~~ 558 (768)
+|.+|.+|++.|++.+ +.+++...+.|.... + |+++
T Consensus 451 ~f~iD~~gi~~v~a~~------------------------------------------~~~~k~~~i~i~~~~-~-ls~~ 486 (579)
T COG0443 451 TFDIDANGILNVTAKD------------------------------------------LGTGKEQSITIKASS-G-LSDE 486 (579)
T ss_pred EeccCCCcceEeeeec------------------------------------------ccCCceEEEEEecCC-C-CCHH
Confidence 9999999999998853 345666778888776 4 9999
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHHHHHHHhhHhhccCCHHHHHHHHHHHHHHHHHHhhcCCCccHHHHH
Q 004211 559 ELSEAVEKEHQLVQQDLKMERTKDRKNALESYVYEMRDKISNIYRSFATESEREGISRNLRDTEEWLYEDGDDESENVYA 638 (768)
Q Consensus 559 e~~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~t~~e~~~l~~~l~~~~~WL~~~g~~a~~~~~~ 638 (768)
+++.+.+....+.+.|...++..+.+|..++++|.++..|.+.. .+++++++.+...+.++++||+.+ ..+++
T Consensus 487 ~i~~~~~~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~ 559 (579)
T COG0443 487 EIERMVEDAEANAALDKKFRELVEARNEAESLIYSLEKALKEIV--KVSEEEKEKIEEAITDLEEALEGE-----KEEIK 559 (579)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHhhhc--cCCHHHHHHHHHHHHHHHHHHhcc-----HHHHH
Confidence 99999999999999999999999999999999999999997644 899999999999999999999982 88999
Q ss_pred HHHHHHHHhHhHHHHhhH
Q 004211 639 ERLEDLKKLVDPIEGRYK 656 (768)
Q Consensus 639 ~kl~~L~~~~~pi~~R~~ 656 (768)
.+.++|+....++..++.
T Consensus 560 ~~~~~l~~~~~~~~~~~~ 577 (579)
T COG0443 560 AKIEELQEVTQKLAEKKY 577 (579)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999988887664
No 20
>PRK11678 putative chaperone; Provisional
Probab=100.00 E-value=8.2e-55 Score=478.53 Aligned_cols=337 Identities=23% Similarity=0.307 Sum_probs=288.9
Q ss_pred EEEEEcCccceEEEEEEcCCceEEEeCCCCCccceEEEEee---------------------------------------
Q 004211 3 VVGFDIGNENCVIAAVKQGGMLDVLLNDESKRETPTVVSFS--------------------------------------- 43 (768)
Q Consensus 3 viGID~GTt~s~va~~~~g~~~~ii~n~~~~r~~Ps~V~~~--------------------------------------- 43 (768)
++|||||||||+||++.+|. ++++.++.|.+.+||+|+|.
T Consensus 2 ~iGID~GTtNs~va~~~~~~-~~li~~~~~~~~~pS~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (450)
T PRK11678 2 FIGFDYGTANCSVAVMRDGK-PRLLPLENDSTYLPSTLCAPTREAVSEWLYRHLDVPAYDDERQALLRRAIRYNREEDID 80 (450)
T ss_pred eEEEecCccceeeEEeeCCc-eEEEEcCCCCCcCCeeeeccCchhhhhhhhhhcccCcccchhhhhhhhhhhhccccccc
Confidence 58999999999999999887 89999999999999999994
Q ss_pred --CCceeecHHHHhhhhhCCcch--HhHHHHhcCCCCCChHHHhhhccCCceeeecCCCCEEEEEEecCceeEecHHHHH
Q 004211 44 --EKQRFLGSAGAASAMMNPKST--ISQVKRLLGRKFREDDVQKDLKLFPFETCESHDGGILIMLEYLGETHKFTPVQIL 119 (768)
Q Consensus 44 --~~~~~~G~~A~~~~~~~~~~~--~~~~k~llg~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~ 119 (768)
+++.++|..|+.....+|..+ +.++|++||...-.+ + ....+++++
T Consensus 81 ~~~~~~~~G~~A~~~~~~~p~~~r~i~s~Kr~lg~~~~~~------------------~------------~~~~~e~l~ 130 (450)
T PRK11678 81 VTAQSVFFGLAALAQYLEDPEEVYFVKSPKSFLGASGLKP------------------Q------------QVALFEDLV 130 (450)
T ss_pred ccccccchhHHHHHhhccCCCCceEEecchhhhccCCCCc------------------c------------ceeCHHHHH
Confidence 345689999999999999988 789999999653110 1 123489999
Q ss_pred HHHHHHHHHHHHhhccCCCCeEEEEeCCCCC-----HHHHHH---HHHHHHHcCCCceeeccchHHHHHHhhhcccCCCC
Q 004211 120 GMLLSNLKQITEKNIKIPISNCVIGVPCYLT-----DVQRRA---YLDAATIAGLKPLRLMHDCTATALGYGIYKTDFSN 191 (768)
Q Consensus 120 a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~-----~~qr~~---l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~ 191 (768)
+++|++|++.++.++|.++.++|||||++|+ +.||++ +++||+.|||++++|++||+|||++|+...
T Consensus 131 a~iL~~lk~~ae~~~g~~v~~~VItvPa~F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y~~~~----- 205 (450)
T PRK11678 131 CAMMLHIKQQAEAQLQAAITQAVIGRPVNFQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDFEATL----- 205 (450)
T ss_pred HHHHHHHHHHHHHHhCCCCCcEEEEECCccccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHHhcccc-----
Confidence 9999999999999999999999999999998 778766 799999999999999999999999998643
Q ss_pred CCCcEEEEEEeCCceEEEEEEEeeCC-------eEEEEEEeCCCCCchhhHHHHHH-HHHHHHHhh----hcccCc----
Q 004211 192 VGPTYVVFVDIGHCDTQVCVASYENG-------HMKILSHAFDESLGGRDFDEVLS-SYFAAQFKQ----QYDIDV---- 255 (768)
Q Consensus 192 ~~~~~vlv~D~GggT~dvsv~~~~~~-------~~~vl~~~~~~~lGG~~~d~~l~-~~l~~~~~~----~~~~~~---- 255 (768)
..+..+|||||||||+|+|++++.++ ..+|+++.| ..+||++||..|+ +++...|.. +++.++
T Consensus 206 ~~~~~vlV~D~GGGT~D~Svv~~~~~~~~~~~r~~~vla~~G-~~lGG~DfD~~L~~~~~~~~fg~~~~~~~g~~~p~~~ 284 (450)
T PRK11678 206 TEEKRVLVVDIGGGTTDCSMLLMGPSWRGRADRSASLLGHSG-QRIGGNDLDIALAFKQLMPLLGMGSETEKGIALPSLP 284 (450)
T ss_pred CCCCeEEEEEeCCCeEEEEEEEecCcccccCCcceeEEecCC-CCCChHHHHHHHHHHHHHHHhhhchhhccCCcCcchh
Confidence 45788999999999999999999754 368999997 6899999999998 678877752 111110
Q ss_pred -------------------------------cCChHHH------------HHHHHHHHHHhhhcCCCCeeeEEEeccccC
Q 004211 256 -------------------------------YTNVKAS------------IRLRASCEKLKKVLSANAEAPLNIECLMNE 292 (768)
Q Consensus 256 -------------------------------~~~~~~~------------~rL~~~ae~~K~~Ls~~~~~~~~i~~l~~~ 292 (768)
..+|+.+ .+|+.+||++|+.||.+.++.+.++.+.
T Consensus 285 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~p~~~~rl~~l~~~~~~~~L~~~aE~aK~~LS~~~~a~i~~~~~~-- 362 (450)
T PRK11678 285 FWNAVAINDVPAQSDFYSLANGRLLNDLIRDAREPEKVARLLKVWRQRLSYRLVRSAEEAKIALSDQAETRASLDFIS-- 362 (450)
T ss_pred hhhhhhhhccchhhhhhhhhhHHHHHHHhhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHcCCCCceEEEecccC--
Confidence 1133333 3788999999999999999999998764
Q ss_pred cceEEEecHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEecCCCChHHHHHHHHhhcCCCCCCcCCchhHHHh
Q 004211 293 KDVKGFIRREEFEKLSSSLLERMRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVAR 372 (768)
Q Consensus 293 ~d~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~ 372 (768)
.++...|||++|+++++++++++..+++++|+++++. ++.|+||||+|++|.|++.|++.||.......+|.++||.
T Consensus 363 ~~~~~~ItR~efe~ii~~~l~ri~~~i~~~L~~a~~~---~d~VvLvGGsSriP~V~~~l~~~fg~~~v~~g~~~~sVa~ 439 (450)
T PRK11678 363 DGLATEISQQGLEEAISQPLARILELVQLALDQAQVK---PDVIYLTGGSARSPLIRAALAQQLPGIPIVGGDDFGSVTA 439 (450)
T ss_pred CCcceeeCHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---CCEEEEcCcccchHHHHHHHHHHCCCCcEEeCCCcchHHH
Confidence 3577899999999999999999999999999999976 4789999999999999999999998655667899999999
Q ss_pred hHHHHhhHh
Q 004211 373 GCALQCAML 381 (768)
Q Consensus 373 GAa~~a~~l 381 (768)
|+|++|..+
T Consensus 440 Gla~~a~~~ 448 (450)
T PRK11678 440 GLARWAQVV 448 (450)
T ss_pred HHHHHHHhh
Confidence 999999753
No 21
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=100.00 E-value=2.4e-38 Score=341.10 Aligned_cols=307 Identities=21% Similarity=0.310 Sum_probs=234.6
Q ss_pred EEEEcCccceEEEEEEcCCceEEEeCCCCCccceEEEEeeCC--c-eeecHHHHhhhhhCCcchHhHHHHhcCCCCCChH
Q 004211 4 VGFDIGNENCVIAAVKQGGMLDVLLNDESKRETPTVVSFSEK--Q-RFLGSAGAASAMMNPKSTISQVKRLLGRKFREDD 80 (768)
Q Consensus 4 iGID~GTt~s~va~~~~g~~~~ii~n~~~~r~~Ps~V~~~~~--~-~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~ 80 (768)
+||||||++|+|+....+ .++. .||+|+|..+ . ..+|.+|.....+.|.+...
T Consensus 6 ~gIDlGt~~~~i~~~~~~---~v~~-------~psvv~~~~~~~~i~~vG~~A~~~~~~~p~~~~~-------------- 61 (336)
T PRK13928 6 IGIDLGTANVLVYVKGKG---IVLN-------EPSVVAIDKNTNKVLAVGEEARRMVGRTPGNIVA-------------- 61 (336)
T ss_pred eEEEcccccEEEEECCCC---EEEc-------cCCEEEEECCCCeEEEecHHHHHhhhcCCCCEEE--------------
Confidence 799999999999886333 2432 5999999954 2 36899997665444443321
Q ss_pred HHhhhccCCceeeecCCCCEEEEEEecCceeEecHHHHHHHHHHHHHHHHHhhccCCCCeEEEEeCCCCCHHHHHHHHHH
Q 004211 81 VQKDLKLFPFETCESHDGGILIMLEYLGETHKFTPVQILGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDVQRRAYLDA 160 (768)
Q Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~A 160 (768)
..|. .+|. +...+....+|+++.+.+..........+|||||++|+..+|+++.+|
T Consensus 62 ------~~pi-----~~G~-------------i~d~~~~~~~l~~~~~~~~~~~~~~~p~~vitvP~~~~~~~r~~~~~a 117 (336)
T PRK13928 62 ------IRPL-----RDGV-------------IADYDVTEKMLKYFINKACGKRFFSKPRIMICIPTGITSVEKRAVREA 117 (336)
T ss_pred ------EccC-----CCCe-------------EecHHHHHHHHHHHHHHHhccCCCCCCeEEEEeCCCCCHHHHHHHHHH
Confidence 0111 1232 222245566666666544322222334799999999999999999999
Q ss_pred HHHcCCCceeeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCCchhhHHHHHH
Q 004211 161 ATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEVLS 240 (768)
Q Consensus 161 a~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~d~~l~ 240 (768)
++.||++.+.+++||+|||++|+... ..+..++|||+||||||+++++... ++ ..++..+||++||..|+
T Consensus 118 ~~~ag~~~~~li~ep~Aaa~~~g~~~-----~~~~~~lVvDiGggttdvsvv~~g~----~~-~~~~~~lGG~did~~i~ 187 (336)
T PRK13928 118 AEQAGAKKVYLIEEPLAAAIGAGLDI-----SQPSGNMVVDIGGGTTDIAVLSLGG----IV-TSSSIKVAGDKFDEAII 187 (336)
T ss_pred HHHcCCCceEecccHHHHHHHcCCcc-----cCCCeEEEEEeCCCeEEEEEEEeCC----EE-EeCCcCCHHHHHHHHHH
Confidence 99999999999999999999998743 3466799999999999999998752 22 34578999999999999
Q ss_pred HHHHHHHhhhcccCccCChHHHHHHHHHHHHHhhhcCCCC----eeeEEEe--ccccCcceEEEecHHHHHHHHHHHHHH
Q 004211 241 SYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANA----EAPLNIE--CLMNEKDVKGFIRREEFEKLSSSLLER 314 (768)
Q Consensus 241 ~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~----~~~~~i~--~l~~~~d~~~~itr~~fe~~~~~~~~~ 314 (768)
+++..+|. ..+. ...||++|+.++... ...+.+. .+..+.+..+.|+|++|++++.+.+++
T Consensus 188 ~~l~~~~~----~~~~---------~~~ae~lK~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~i~~~~~~eii~~~~~~ 254 (336)
T PRK13928 188 RYIRKKYK----LLIG---------ERTAEEIKIKIGTAFPGAREEEMEIRGRDLVTGLPKTITVTSEEIREALKEPVSA 254 (336)
T ss_pred HHHHHHhc----hhcC---------HHHHHHHHHHhcccccccCCcEEEEecccccCCCceEEEECHHHHHHHHHHHHHH
Confidence 99987663 2221 267999999986431 1233332 234456778899999999999999999
Q ss_pred HHHHHHHHHHhCC--CCCCCcC-EEEEecCCCChHHHHHHHHhhcCCCCCCcCCchhHHHhhHHHHhhHh
Q 004211 315 MRIPCQKALAGSG--LNVEKIH-SVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQCAML 381 (768)
Q Consensus 315 i~~~i~~~l~~~~--~~~~~i~-~V~LvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~GAa~~a~~l 381 (768)
+...|+++|+.++ +....++ .|+|+||+|++|.|+++|++.|+.++....||++|||+|||+++..+
T Consensus 255 i~~~i~~~l~~~~~~~~~~~i~~~IvL~GG~s~ipgi~e~l~~~~~~~v~~~~~P~~ava~Gaa~~~~~~ 324 (336)
T PRK13928 255 IVQAVKSVLERTPPELSADIIDRGIIMTGGGALLHGLDKLLAEETKVPVYIAEDPISCVALGTGKMLENI 324 (336)
T ss_pred HHHHHHHHHHhCCccccHhhcCCCEEEECcccchhhHHHHHHHHHCCCceecCCHHHHHHHHHHHHHhch
Confidence 9999999999986 4455677 79999999999999999999999988889999999999999998764
No 22
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=100.00 E-value=9.8e-38 Score=335.07 Aligned_cols=305 Identities=22% Similarity=0.310 Sum_probs=241.7
Q ss_pred EEEEEcCccceEEEEEEcCCceEEEeCCCCCccceEEEEeeCCc---eeecHHHHhhhhhCCcchHhHHHHhcCCCCCCh
Q 004211 3 VVGFDIGNENCVIAAVKQGGMLDVLLNDESKRETPTVVSFSEKQ---RFLGSAGAASAMMNPKSTISQVKRLLGRKFRED 79 (768)
Q Consensus 3 viGID~GTt~s~va~~~~g~~~~ii~n~~~~r~~Ps~V~~~~~~---~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~ 79 (768)
.+||||||+++++ +.++. . ++.|. ||+|+|+.++ ..+|.+|+.+..++|.++... + ++
T Consensus 6 ~~giDlGt~~~~i--~~~~~-~-~~~~~------ps~va~~~~~~~~~~vG~~A~~~~~~~p~~~~~~--~----pi--- 66 (335)
T PRK13929 6 EIGIDLGTANILV--YSKNK-G-IILNE------PSVVAVDTETKAVLAIGTEAKNMIGKTPGKIVAV--R----PM--- 66 (335)
T ss_pred eEEEEcccccEEE--EECCC-c-EEecC------CcEEEEECCCCeEEEeCHHHHHhhhcCCCcEEEE--e----cC---
Confidence 5899999999985 44554 2 45564 9999998543 478999988887777665321 1 11
Q ss_pred HHHhhhccCCceeeecCCCCEEEEEEecCceeEecHHHHHHHHHHHHHHHHHhhccCCCC--eEEEEeCCCCCHHHHHHH
Q 004211 80 DVQKDLKLFPFETCESHDGGILIMLEYLGETHKFTPVQILGMLLSNLKQITEKNIKIPIS--NCVIGVPCYLTDVQRRAY 157 (768)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~--~~VitVPa~~~~~qr~~l 157 (768)
.+|. +.--++++++|++++..++..++..+. .+|||||++|+..||+++
T Consensus 67 ----------------~~G~-------------I~d~d~~~~~l~~~~~~~~~~l~~~~~~~~vvitvP~~~~~~~R~~l 117 (335)
T PRK13929 67 ----------------KDGV-------------IADYDMTTDLLKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAI 117 (335)
T ss_pred ----------------CCCc-------------cCCHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCHHHHHHH
Confidence 1232 112268899999999988777775543 799999999999999999
Q ss_pred HHHHHHcCCCceeeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCCchhhHHH
Q 004211 158 LDAATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDE 237 (768)
Q Consensus 158 ~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~d~ 237 (768)
.+|++.||++++.+++||+|||++|+... ..+..++|||+||||||++++.+.+ ++ ..++..+||++||.
T Consensus 118 ~~a~~~ag~~~~~li~ep~Aaa~~~g~~~-----~~~~~~lvvDiG~gtt~v~vi~~~~----~~-~~~~~~~GG~~id~ 187 (335)
T PRK13929 118 SDAVKNCGAKNVHLIEEPVAAAIGADLPV-----DEPVANVVVDIGGGTTEVAIISFGG----VV-SCHSIRIGGDQLDE 187 (335)
T ss_pred HHHHHHcCCCeeEeecCHHHHHHhcCCCc-----CCCceEEEEEeCCCeEEEEEEEeCC----EE-EecCcCCHHHHHHH
Confidence 99999999999999999999999997643 4567899999999999999998753 22 33467899999999
Q ss_pred HHHHHHHHHHhhhcccCccCChHHHHHHHHHHHHHhhhcCCCC----eeeEEEe--ccccCcceEEEecHHHHHHHHHHH
Q 004211 238 VLSSYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANA----EAPLNIE--CLMNEKDVKGFIRREEFEKLSSSL 311 (768)
Q Consensus 238 ~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~----~~~~~i~--~l~~~~d~~~~itr~~fe~~~~~~ 311 (768)
.|++++...+ +.... ...||++|+.++... ...+.+. .+..+.+..+.+++++|.++|.++
T Consensus 188 ~l~~~l~~~~----~~~~~---------~~~AE~iK~~l~~~~~~~~~~~~~v~g~~~~~~~p~~i~i~~~~~~~~i~~~ 254 (335)
T PRK13929 188 DIVSFVRKKY----NLLIG---------ERTAEQVKMEIGYALIEHEPETMEVRGRDLVTGLPKTITLESKEIQGAMRES 254 (335)
T ss_pred HHHHHHHHHh----CcCcC---------HHHHHHHHHHHcCCCCCCCCceEEEeCCccCCCCCeEEEEcHHHHHHHHHHH
Confidence 9999998654 33221 168999999997632 2223332 233455678899999999999999
Q ss_pred HHHHHHHHHHHHHhCCC--CCCCcC-EEEEecCCCChHHHHHHHHhhcCCCCCCcCCchhHHHhhHHHHh
Q 004211 312 LERMRIPCQKALAGSGL--NVEKIH-SVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQC 378 (768)
Q Consensus 312 ~~~i~~~i~~~l~~~~~--~~~~i~-~V~LvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~GAa~~a 378 (768)
+.++...|.+.|++++. ....++ .|+|+||+|++|.++++|++.||.++....||+++||+||+..-
T Consensus 255 l~~i~~~i~~~L~~~~~~l~~~~~~~gIvLtGG~s~lpgl~e~l~~~~~~~v~~~~~P~~~Va~Ga~~~~ 324 (335)
T PRK13929 255 LLHILEAIRATLEDCPPELSGDIVDRGVILTGGGALLNGIKEWLSEEIVVPVHVAANPLESVAIGTGRSL 324 (335)
T ss_pred HHHHHHHHHHHHHhCCcccchhhcCCCEEEEchhhhhhhHHHHHHHHHCCCceeCCCHHHHHHHHHHHHH
Confidence 99999999999999853 335677 69999999999999999999999999888999999999999764
No 23
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=3.7e-35 Score=316.88 Aligned_cols=305 Identities=23% Similarity=0.347 Sum_probs=228.1
Q ss_pred EEEEEcCccceEEEEEEcCCceEEEeCCCCCccceEEEEeeCC-c--eeecHHHHhhhhhCCcchHhHHHHhcCCCCCCh
Q 004211 3 VVGFDIGNENCVIAAVKQGGMLDVLLNDESKRETPTVVSFSEK-Q--RFLGSAGAASAMMNPKSTISQVKRLLGRKFRED 79 (768)
Q Consensus 3 viGID~GTt~s~va~~~~g~~~~ii~n~~~~r~~Ps~V~~~~~-~--~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~ 79 (768)
.|||||||++++++. .|... ++ .+||+|+|..+ + .++|++|.....+.|.++...
T Consensus 7 ~igIDlGt~~~~i~~--~~~~~-~~-------~~ps~v~~~~~~~~~~~vG~~a~~~~~~~~~~~~~~------------ 64 (334)
T PRK13927 7 DLGIDLGTANTLVYV--KGKGI-VL-------NEPSVVAIRTDTKKVLAVGEEAKQMLGRTPGNIVAI------------ 64 (334)
T ss_pred eeEEEcCcceEEEEE--CCCcE-EE-------ecCCEEEEECCCCeEEEecHHHHHHhhcCCCCEEEE------------
Confidence 589999999999854 33312 32 27999999754 3 389999987765555443110
Q ss_pred HHHhhhccCCceeeecCCCCEEEEEEecCceeEec-HHHHHHHHHHHHHHHHHhhccCCCCeEEEEeCCCCCHHHHHHHH
Q 004211 80 DVQKDLKLFPFETCESHDGGILIMLEYLGETHKFT-PVQILGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDVQRRAYL 158 (768)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~-~eel~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~ 158 (768)
.|. .+|.+ ..+. .++++..++.++... .. ....+|+|||++|+..+|++++
T Consensus 65 --------~pi-----~~G~i----------~d~~~~~~ll~~~~~~~~~~----~~-~~~~~vi~vP~~~~~~~r~~~~ 116 (334)
T PRK13927 65 --------RPM-----KDGVI----------ADFDVTEKMLKYFIKKVHKN----FR-PSPRVVICVPSGITEVERRAVR 116 (334)
T ss_pred --------ecC-----CCCee----------cCHHHHHHHHHHHHHHHhhc----cC-CCCcEEEEeCCCCCHHHHHHHH
Confidence 111 12321 1121 344555555443322 11 1238999999999999999999
Q ss_pred HHHHHcCCCceeeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCCchhhHHHH
Q 004211 159 DAATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEV 238 (768)
Q Consensus 159 ~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~d~~ 238 (768)
.|++.||++.+.+++||+|||++|+... ..+..++|||+||||||++++++.+. . ..++..+||++||+.
T Consensus 117 ~a~~~ag~~~~~li~ep~aaa~~~g~~~-----~~~~~~lvvDiGggttdvs~v~~~~~----~-~~~~~~lGG~~id~~ 186 (334)
T PRK13927 117 ESALGAGAREVYLIEEPMAAAIGAGLPV-----TEPTGSMVVDIGGGTTEVAVISLGGI----V-YSKSVRVGGDKFDEA 186 (334)
T ss_pred HHHHHcCCCeeccCCChHHHHHHcCCcc-----cCCCeEEEEEeCCCeEEEEEEecCCe----E-eeCCcCChHHHHHHH
Confidence 9999999999999999999999998643 34567899999999999999987631 1 234678999999999
Q ss_pred HHHHHHHHHhhhcccCccCChHHHHHHHHHHHHHhhhcCCCCe----eeEEE--eccccCcceEEEecHHHHHHHHHHHH
Q 004211 239 LSSYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANAE----APLNI--ECLMNEKDVKGFIRREEFEKLSSSLL 312 (768)
Q Consensus 239 l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~----~~~~i--~~l~~~~d~~~~itr~~fe~~~~~~~ 312 (768)
|.+++.+++. .... ...||++|+.++.... ..+.+ +.+..+.+..+.|+|++|++++.+.+
T Consensus 187 l~~~l~~~~~----~~~~---------~~~ae~iK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~~~ 253 (334)
T PRK13927 187 IINYVRRNYN----LLIG---------ERTAERIKIEIGSAYPGDEVLEMEVRGRDLVTGLPKTITISSNEIREALQEPL 253 (334)
T ss_pred HHHHHHHHhC----cCcC---------HHHHHHHHHHhhccCCCCCCceEEEeCcccCCCCCeEEEECHHHHHHHHHHHH
Confidence 9999986653 2221 1578999999875322 22333 23345566788999999999999999
Q ss_pred HHHHHHHHHHHHhCCCC--CCCcC-EEEEecCCCChHHHHHHHHhhcCCCCCCcCCchhHHHhhHHHHhhH
Q 004211 313 ERMRIPCQKALAGSGLN--VEKIH-SVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQCAM 380 (768)
Q Consensus 313 ~~i~~~i~~~l~~~~~~--~~~i~-~V~LvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~GAa~~a~~ 380 (768)
.++...|.++|++++.. ...++ .|+|+||+|++|.++++|++.|+.++....||+++||+|||+++..
T Consensus 254 ~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipgl~~~l~~~~~~~v~~~~~P~~ava~Ga~~~~~~ 324 (334)
T PRK13927 254 SAIVEAVKVALEQTPPELAADIVDRGIVLTGGGALLRGLDKLLSEETGLPVHVAEDPLTCVARGTGKALEN 324 (334)
T ss_pred HHHHHHHHHHHHHCCchhhhhhhcCCEEEECchhhhhHHHHHHHHHHCCCcEecCCHHHHHHHHHHHHHhh
Confidence 99999999999998643 22234 5999999999999999999999988989999999999999999865
No 24
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=100.00 E-value=8.8e-35 Score=313.18 Aligned_cols=305 Identities=21% Similarity=0.317 Sum_probs=224.8
Q ss_pred EEEEcCccceEEEEEEcCCceEEEeCCCCCccceEEEEeeCC-----c--eeecHHHHhhhhhCCcchHhHHHHhcCCCC
Q 004211 4 VGFDIGNENCVIAAVKQGGMLDVLLNDESKRETPTVVSFSEK-----Q--RFLGSAGAASAMMNPKSTISQVKRLLGRKF 76 (768)
Q Consensus 4 iGID~GTt~s~va~~~~g~~~~ii~n~~~~r~~Ps~V~~~~~-----~--~~~G~~A~~~~~~~~~~~~~~~k~llg~~~ 76 (768)
+||||||+||+++....| . ++ ..||+|+|..+ + ..+|++|.....+.|.+.- ++
T Consensus 5 ~giDlGt~~s~i~~~~~~--~-~~-------~~psvv~~~~~~~~~~~~~~~vG~~A~~~~~~~~~~~~--~~------- 65 (333)
T TIGR00904 5 IGIDLGTANTLVYVKGRG--I-VL-------NEPSVVAIRTDRDAKTKSILAVGHEAKEMLGKTPGNIV--AI------- 65 (333)
T ss_pred eEEecCcceEEEEECCCC--E-EE-------ecCCEEEEecCCCCCCCeEEEEhHHHHHhhhcCCCCEE--EE-------
Confidence 899999999999885332 2 33 36999999843 3 5799999765444443321 01
Q ss_pred CChHHHhhhccCCceeeecCCCCEEEEEEecCceeEe-cHHHHHHHHHHHHHHHHHhhccCCCCeEEEEeCCCCCHHHHH
Q 004211 77 REDDVQKDLKLFPFETCESHDGGILIMLEYLGETHKF-TPVQILGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDVQRR 155 (768)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~-~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~ 155 (768)
.| ..+|.+ ..+ ..++++.++|..+.... +.....+|+|||++|+..+|+
T Consensus 66 -----------~p-----i~~G~i----------~d~~~~~~~~~~~l~~~~~~~----~~~~~~~vitvP~~~~~~~r~ 115 (333)
T TIGR00904 66 -----------RP-----MKDGVI----------ADFEVTEKMIKYFIKQVHSRK----SFFKPRIVICVPSGITPVERR 115 (333)
T ss_pred -----------ec-----CCCCEE----------EcHHHHHHHHHHHHHHHhccc----ccCCCcEEEEeCCCCCHHHHH
Confidence 11 112321 112 12445555554443321 111238999999999999999
Q ss_pred HHHHHHHHcCCCceeeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCCchhhH
Q 004211 156 AYLDAATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDF 235 (768)
Q Consensus 156 ~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~ 235 (768)
++++|++.||++.+.+++||+|||++|+... ..+..++|||+||||||++++++.+- ...++..+||++|
T Consensus 116 ~~~~~~~~ag~~~~~li~ep~aaa~~~g~~~-----~~~~~~lVvDiG~gttdvs~v~~~~~-----~~~~~~~lGG~di 185 (333)
T TIGR00904 116 AVKESALSAGAREVYLIEEPMAAAIGAGLPV-----EEPTGSMVVDIGGGTTEVAVISLGGI-----VVSRSIRVGGDEF 185 (333)
T ss_pred HHHHHHHHcCCCeEEEecCHHHHHHhcCCcc-----cCCceEEEEEcCCCeEEEEEEEeCCE-----EecCCccchHHHH
Confidence 9999999999999999999999999997643 34677999999999999999987631 1234678999999
Q ss_pred HHHHHHHHHHHHhhhcccCccCChHHHHHHHHHHHHHhhhcCCCCe-----eeEEEec--cccCcceEEEecHHHHHHHH
Q 004211 236 DEVLSSYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANAE-----APLNIEC--LMNEKDVKGFIRREEFEKLS 308 (768)
Q Consensus 236 d~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~-----~~~~i~~--l~~~~d~~~~itr~~fe~~~ 308 (768)
|+.|++++..++. .... +..||++|+.++.... ..+.+.. ...+......|++++|.+++
T Consensus 186 d~~l~~~l~~~~~----~~~~---------~~~ae~lK~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i 252 (333)
T TIGR00904 186 DEAIINYIRRTYN----LLIG---------EQTAERIKIEIGSAYPLNDEPRKMEVRGRDLVTGLPRTIEITSVEVREAL 252 (333)
T ss_pred HHHHHHHHHHHhc----ccCC---------HHHHHHHHHHHhccccccccccceeecCccccCCCCeEEEECHHHHHHHH
Confidence 9999999986642 2221 2689999999965321 1222221 11233456789999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCC-CCc-C-EEEEecCCCChHHHHHHHHhhcCCCCCCcCCchhHHHhhHHHHhhH
Q 004211 309 SSLLERMRIPCQKALAGSGLNV-EKI-H-SVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQCAM 380 (768)
Q Consensus 309 ~~~~~~i~~~i~~~l~~~~~~~-~~i-~-~V~LvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~GAa~~a~~ 380 (768)
.+.+.++...+.+.++.++... .++ + .|+|+||+|++|.++++|++.||.++....||+++||.||++++..
T Consensus 253 ~~~~~~i~~~i~~~l~~~~~~~~~~l~~~~IvL~GGss~ipgl~e~l~~~~~~~v~~~~~P~~~va~Ga~~~~~~ 327 (333)
T TIGR00904 253 QEPVNQIVEAVKRTLEKTPPELAADIVERGIVLTGGGALLRNLDKLLSKETGLPVIVADDPLLCVAKGTGKALED 327 (333)
T ss_pred HHHHHHHHHHHHHHHHhCCchhhhhhccCCEEEECcccchhhHHHHHHHHHCCCceecCChHHHHHHHHHHHHhC
Confidence 9999999999999999976432 234 3 6999999999999999999999999999999999999999998754
No 25
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=1.2e-33 Score=305.53 Aligned_cols=308 Identities=22% Similarity=0.314 Sum_probs=228.8
Q ss_pred EEEEEcCccceEEEEEEcCCceEEEeCCCCCccceEEEEeeCC---ceeecHHHHhhhhhCCcchHhHHHHhcCCCCCCh
Q 004211 3 VVGFDIGNENCVIAAVKQGGMLDVLLNDESKRETPTVVSFSEK---QRFLGSAGAASAMMNPKSTISQVKRLLGRKFRED 79 (768)
Q Consensus 3 viGID~GTt~s~va~~~~g~~~~ii~n~~~~r~~Ps~V~~~~~---~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~ 79 (768)
.+||||||++|+++++ |+.+ ++ .+||+|++... ..++|.+|.....+.|.+.-.
T Consensus 10 ~vgiDlGt~~t~i~~~--~~~~-~~-------~~ps~v~~~~~~~~~~~vG~~A~~~~~~~~~~~~~------------- 66 (335)
T PRK13930 10 DIGIDLGTANTLVYVK--GKGI-VL-------NEPSVVAIDTKTGKVLAVGEEAKEMLGRTPGNIEA------------- 66 (335)
T ss_pred ceEEEcCCCcEEEEEC--CCCE-EE-------ecCCEEEEECCCCeEEEEcHHHHHhhhcCCCCeEE-------------
Confidence 3899999999999886 3312 22 25999999752 258999997665444433210
Q ss_pred HHHhhhccCCceeeecCCCCEEEEEEecCceeEecHHHHHHHHHHHHHHHHHhhccCCCCeEEEEeCCCCCHHHHHHHHH
Q 004211 80 DVQKDLKLFPFETCESHDGGILIMLEYLGETHKFTPVQILGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDVQRRAYLD 159 (768)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~ 159 (768)
..|+ .+|.+ .. -+....+++++.+.+..........+|+|+|++|+..+|+++.+
T Consensus 67 -------~~pi-----~~G~i------------~d-~~~~e~ll~~~~~~~~~~~~~~~~~vvit~P~~~~~~~r~~~~~ 121 (335)
T PRK13930 67 -------IRPL-----KDGVI------------AD-FEATEAMLRYFIKKARGRRFFRKPRIVICVPSGITEVERRAVRE 121 (335)
T ss_pred -------eecC-----CCCeE------------cC-HHHHHHHHHHHHHHHhhcccCCCCcEEEEECCCCCHHHHHHHHH
Confidence 0111 13321 11 13355555665544433333345789999999999999999999
Q ss_pred HHHHcCCCceeeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCCchhhHHHHH
Q 004211 160 AATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEVL 239 (768)
Q Consensus 160 Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~d~~l 239 (768)
|++.+|++.+.+++||+|||++|+... ..+..++|||+||||||++++.... ++. .+...+||++||+.|
T Consensus 122 ~~e~~g~~~~~lv~ep~AAa~a~g~~~-----~~~~~~lVvDiG~gttdvs~v~~g~----~~~-~~~~~lGG~~id~~l 191 (335)
T PRK13930 122 AAEHAGAREVYLIEEPMAAAIGAGLPV-----TEPVGNMVVDIGGGTTEVAVISLGG----IVY-SESIRVAGDEMDEAI 191 (335)
T ss_pred HHHHcCCCeEEecccHHHHHHhcCCCc-----CCCCceEEEEeCCCeEEEEEEEeCC----EEe-ecCcCchhHHHHHHH
Confidence 999999999999999999999987643 2345689999999999999998652 222 457899999999999
Q ss_pred HHHHHHHHhhhcccCccCChHHHHHHHHHHHHHhhhcCCCCe----eeEEEe--ccccCcceEEEecHHHHHHHHHHHHH
Q 004211 240 SSYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANAE----APLNIE--CLMNEKDVKGFIRREEFEKLSSSLLE 313 (768)
Q Consensus 240 ~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~----~~~~i~--~l~~~~d~~~~itr~~fe~~~~~~~~ 313 (768)
.+++..++ +.... ...||++|+.++.... ..+.+. .+..+.+..+.|++++|++++.+.++
T Consensus 192 ~~~l~~~~----~~~~~---------~~~ae~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~~~~ 258 (335)
T PRK13930 192 VQYVRRKY----NLLIG---------ERTAEEIKIEIGSAYPLDEEESMEVRGRDLVTGLPKTIEISSEEVREALAEPLQ 258 (335)
T ss_pred HHHHHHHh----CCCCC---------HHHHHHHHHHhhcCcCCCCCceEEEECccCCCCCCeeEEECHHHHHHHHHHHHH
Confidence 99998764 22222 1679999999975432 123332 22234456789999999999999999
Q ss_pred HHHHHHHHHHHhCCCC--CCCcC-EEEEecCCCChHHHHHHHHhhcCCCCCCcCCchhHHHhhHHHHhhHh
Q 004211 314 RMRIPCQKALAGSGLN--VEKIH-SVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQCAML 381 (768)
Q Consensus 314 ~i~~~i~~~l~~~~~~--~~~i~-~V~LvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~GAa~~a~~l 381 (768)
++...+.++++.++.. ...++ .|+|+||+|++|.++++|++.|+.++....+|++++|+||++++...
T Consensus 259 ~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipg~~~~l~~~~~~~v~~~~~p~~ava~Ga~~~~~~~ 329 (335)
T PRK13930 259 QIVEAVKSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSEETGLPVHIAEDPLTCVARGTGKALENL 329 (335)
T ss_pred HHHHHHHHHHHhCCHHHhhHHHhCCEEEECchhcchhHHHHHHHHHCCCceecCCHHHHHHHHHHHHHhCh
Confidence 9999999999987532 22345 49999999999999999999999888888999999999999998643
No 26
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=100.00 E-value=1.5e-31 Score=279.60 Aligned_cols=306 Identities=23% Similarity=0.337 Sum_probs=217.1
Q ss_pred EEEEEcCccceEEEEEEcCCceEEEeCCCCCccceEEEEeeCCc---eeecHHHHhhhhhCCcchHhHHHHhcCCCCCCh
Q 004211 3 VVGFDIGNENCVIAAVKQGGMLDVLLNDESKRETPTVVSFSEKQ---RFLGSAGAASAMMNPKSTISQVKRLLGRKFRED 79 (768)
Q Consensus 3 viGID~GTt~s~va~~~~g~~~~ii~n~~~~r~~Ps~V~~~~~~---~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~ 79 (768)
-+||||||+++.|+. .+.+ ++.++ ||+|+++.+. ..+|.+|.....+.|.+.
T Consensus 3 ~igIDLGT~~t~i~~-~~~G---iv~~e------pSvVA~~~~~~~i~avG~~A~~m~gktp~~i--------------- 57 (326)
T PF06723_consen 3 DIGIDLGTSNTRIYV-KGKG---IVLNE------PSVVAYDKDTGKILAVGDEAKAMLGKTPDNI--------------- 57 (326)
T ss_dssp EEEEEE-SSEEEEEE-TTTE---EEEEE------ES-EEEETTT--EEEESHHHHTTTTS-GTTE---------------
T ss_pred ceEEecCcccEEEEE-CCCC---EEEec------CcEEEEECCCCeEEEEhHHHHHHhhcCCCcc---------------
Confidence 589999999999855 3344 56665 9999998653 368999954443333221
Q ss_pred HHHhhhccCCceeeecCCCCEEEEEEecCceeEecHHHHHHHHHHHHHHHHHhhccCCCCeEEEEeCCCCCHHHHHHHHH
Q 004211 80 DVQKDLKLFPFETCESHDGGILIMLEYLGETHKFTPVQILGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDVQRRAYLD 159 (768)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~ 159 (768)
.+ .. +..+|.+ .=-++...+|+++.+.+.......-..++|+||+.-|+.+|+++.+
T Consensus 58 ~~-----~~-----Pl~~GvI-------------~D~~~~~~~l~~~l~k~~~~~~~~~p~vvi~vP~~~T~verrA~~~ 114 (326)
T PF06723_consen 58 EV-----VR-----PLKDGVI-------------ADYEAAEEMLRYFLKKALGRRSFFRPRVVICVPSGITEVERRALID 114 (326)
T ss_dssp EE-----E------SEETTEE-------------SSHHHHHHHHHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHH
T ss_pred EE-----Ec-----cccCCcc-------------cCHHHHHHHHHHHHHHhccCCCCCCCeEEEEeCCCCCHHHHHHHHH
Confidence 10 11 1123432 1124566666666665544322344689999999999999999999
Q ss_pred HHHHcCCCceeeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCCchhhHHHHH
Q 004211 160 AATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEVL 239 (768)
Q Consensus 160 Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~d~~l 239 (768)
|+..||...+.|+.||.|||+..++.- ..+...||+|+||||||++++... . ++.+. ...+||++||+.|
T Consensus 115 a~~~aGa~~V~li~ep~AaAiGaGl~i-----~~~~g~miVDIG~GtTdiavislg--g--iv~s~-si~~gG~~~DeaI 184 (326)
T PF06723_consen 115 AARQAGARKVYLIEEPIAAAIGAGLDI-----FEPRGSMIVDIGGGTTDIAVISLG--G--IVASR-SIRIGGDDIDEAI 184 (326)
T ss_dssp HHHHTT-SEEEEEEHHHHHHHHTT--T-----TSSS-EEEEEE-SS-EEEEEEETT--E--EEEEE-EES-SHHHHHHHH
T ss_pred HHHHcCCCEEEEecchHHHHhcCCCCC-----CCCCceEEEEECCCeEEEEEEECC--C--EEEEE-EEEecCcchhHHH
Confidence 999999999999999999999988653 567889999999999999999755 2 33333 4689999999999
Q ss_pred HHHHHHHHhhhcccCccCChHHHHHHHHHHHHHhhhcCCCC----eeeEEEe--ccccCcceEEEecHHHHHHHHHHHHH
Q 004211 240 SSYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANA----EAPLNIE--CLMNEKDVKGFIRREEFEKLSSSLLE 313 (768)
Q Consensus 240 ~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~----~~~~~i~--~l~~~~d~~~~itr~~fe~~~~~~~~ 313 (768)
.+|+.++| ++.+.. ..||++|+.++.-. ...+.+. .+..+...++.|+.+++.+.|.+.+.
T Consensus 185 ~~~ir~~y----~l~Ig~---------~tAE~iK~~~g~~~~~~~~~~~~v~Grd~~tGlP~~~~i~~~ev~~ai~~~~~ 251 (326)
T PF06723_consen 185 IRYIREKY----NLLIGE---------RTAEKIKIEIGSASPPEEEESMEVRGRDLITGLPKSIEITSSEVREAIEPPVD 251 (326)
T ss_dssp HHHHHHHH----SEE--H---------HHHHHHHHHH-BSS--HHHHEEEEEEEETTTTCEEEEEEEHHHHHHHHHHHHH
T ss_pred HHHHHHhh----CcccCH---------HHHHHHHHhcceeeccCCCceEEEECccccCCCcEEEEEcHHHHHHHHHHHHH
Confidence 99999875 444554 88999999986432 1234443 34677788999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCC-CCc--CEEEEecCCCChHHHHHHHHhhcCCCCCCcCCchhHHHhhHHHHhh
Q 004211 314 RMRIPCQKALAGSGLNV-EKI--HSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQCA 379 (768)
Q Consensus 314 ~i~~~i~~~l~~~~~~~-~~i--~~V~LvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~GAa~~a~ 379 (768)
+|...|+++|++..-.. .|| +.|+|+||+|+++.+.++|++.+|.++....||..|||.||.....
T Consensus 252 ~I~~~i~~~Le~~pPel~~DI~~~GI~LtGGga~l~Gl~~~i~~~~~~pV~va~~P~~~va~G~~~~l~ 320 (326)
T PF06723_consen 252 QIVEAIKEVLEKTPPELAADILENGIVLTGGGALLRGLDEYISEETGVPVRVADDPLTAVARGAGKLLE 320 (326)
T ss_dssp HHHHHHHHHHHTS-HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHHSS-EEE-SSTTTHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHCCEEEEChhhhhccHHHHHHHHHCCCEEEcCCHHHHHHHHHHHHHh
Confidence 99999999999852110 133 5799999999999999999999999999999999999999987654
No 27
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=99.97 E-value=5.2e-29 Score=248.97 Aligned_cols=310 Identities=26% Similarity=0.366 Sum_probs=241.4
Q ss_pred eEEEEEcCccceEEEEEEcCCceEEEeCCCCCccceEEEEeeC--Cc---eeecHHHHhhhhhCCcchHhHHHHhcCCCC
Q 004211 2 SVVGFDIGNENCVIAAVKQGGMLDVLLNDESKRETPTVVSFSE--KQ---RFLGSAGAASAMMNPKSTISQVKRLLGRKF 76 (768)
Q Consensus 2 ~viGID~GTt~s~va~~~~g~~~~ii~n~~~~r~~Ps~V~~~~--~~---~~~G~~A~~~~~~~~~~~~~~~k~llg~~~ 76 (768)
..+|||+||.||.|+.- ..+ +++|+ ||+|++.. +. ..+|.+| |+++|+..
T Consensus 7 ~diGIDLGTanTlV~~k-~kg---IVl~e------PSVVAi~~~~~~~~v~aVG~eA---------------K~MlGrTP 61 (342)
T COG1077 7 NDIGIDLGTANTLVYVK-GKG---IVLNE------PSVVAIESEGKTKVVLAVGEEA---------------KQMLGRTP 61 (342)
T ss_pred ccceeeecccceEEEEc-Cce---EEecC------ceEEEEeecCCCceEEEehHHH---------------HHHhccCC
Confidence 36899999999999774 444 78887 99999987 32 2689999 67778776
Q ss_pred CChHHHhhhccCCceeeecCCCCEEEEEEecCceeEecHHHHHHHHHHHHHHHHHhhcc-CCCCeEEEEeCCCCCHHHHH
Q 004211 77 REDDVQKDLKLFPFETCESHDGGILIMLEYLGETHKFTPVQILGMLLSNLKQITEKNIK-IPISNCVIGVPCYLTDVQRR 155 (768)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~-~~~~~~VitVPa~~~~~qr~ 155 (768)
.+... +.+..+|.+ .--++...+|+|+.+......+ .....++++||..-++.+|+
T Consensus 62 ~ni~a----------iRPmkdGVI-------------Ad~~~te~ml~~fik~~~~~~~~~~~prI~i~vP~g~T~VErr 118 (342)
T COG1077 62 GNIVA----------IRPMKDGVI-------------ADFEVTELMLKYFIKKVHKNGSSFPKPRIVICVPSGITDVERR 118 (342)
T ss_pred CCceE----------EeecCCcEe-------------ecHHHHHHHHHHHHHHhccCCCCCCCCcEEEEecCCccHHHHH
Confidence 54221 233445543 2224555666776666543222 34457999999999999999
Q ss_pred HHHHHHHHcCCCceeeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCCchhhH
Q 004211 156 AYLDAATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDF 235 (768)
Q Consensus 156 ~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~ 235 (768)
++++|++.||...+.++.||.|||+..++. ...+..-+|||+||||||++++.+.+ +.... ...+||+.|
T Consensus 119 Ai~ea~~~aGa~~V~lieEp~aAAIGaglp-----i~ep~G~mvvDIGgGTTevaVISlgg----iv~~~-Sirv~GD~~ 188 (342)
T COG1077 119 AIKEAAESAGAREVYLIEEPMAAAIGAGLP-----IMEPTGSMVVDIGGGTTEVAVISLGG----IVSSS-SVRVGGDKM 188 (342)
T ss_pred HHHHHHHhccCceEEEeccHHHHHhcCCCc-----ccCCCCCEEEEeCCCceeEEEEEecC----EEEEe-eEEEecchh
Confidence 999999999999999999999999987653 35667789999999999999999863 22222 467999999
Q ss_pred HHHHHHHHHHHHhhhcccCccCChHHHHHHHHHHHHHhhhcCCC-C-------eeeEEEeccccCcceEEEecHHHHHHH
Q 004211 236 DEVLSSYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSAN-A-------EAPLNIECLMNEKDVKGFIRREEFEKL 307 (768)
Q Consensus 236 d~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~-~-------~~~~~i~~l~~~~d~~~~itr~~fe~~ 307 (768)
|+.|.+|+.++| ++-+.+ +.||++|...... . +.++.-..+..+..-.+.++.++..+.
T Consensus 189 De~Ii~yvr~~~----nl~IGe---------~taE~iK~eiG~a~~~~~~~~~~~eV~Grdl~~GlPk~i~i~s~ev~ea 255 (342)
T COG1077 189 DEAIIVYVRKKY----NLLIGE---------RTAEKIKIEIGSAYPEEEDEELEMEVRGRDLVTGLPKTITINSEEIAEA 255 (342)
T ss_pred hHHHHHHHHHHh----CeeecH---------HHHHHHHHHhcccccccCCccceeeEEeeecccCCCeeEEEcHHHHHHH
Confidence 999999998765 455555 6789999887422 1 123444456667778899999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCC--CCCCCcC-EEEEecCCCChHHHHHHHHhhcCCCCCCcCCchhHHHhhHHHHhhHhc
Q 004211 308 SSSLLERMRIPCQKALAGSG--LNVEKIH-SVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQCAMLS 382 (768)
Q Consensus 308 ~~~~~~~i~~~i~~~l~~~~--~~~~~i~-~V~LvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~GAa~~a~~ls 382 (768)
+++.++.|.+.++..|+... +..+-++ .++|+||+|.+..+.+.|++..+.++....+|-.|||.|+......+.
T Consensus 256 l~~~v~~Iveair~~Le~tpPeL~~DI~ergivltGGGalLrglD~~i~~et~~pv~ia~~pL~~Va~G~G~~le~~~ 333 (342)
T COG1077 256 LEEPLNGIVEAIRLVLEKTPPELAADIVERGIVLTGGGALLRGLDRLLSEETGVPVIIADDPLTCVAKGTGKALEALD 333 (342)
T ss_pred HHHHHHHHHHHHHHHHhhCCchhcccHhhCceEEecchHHhcCchHhHHhccCCeEEECCChHHHHHhccchhhhhhH
Confidence 99999999999999999852 3332234 499999999999999999999999999999999999999998877654
No 28
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=99.96 E-value=1.6e-28 Score=249.77 Aligned_cols=200 Identities=18% Similarity=0.275 Sum_probs=173.1
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCceeeccchHHHHHHhhhcccCCCCCCCc
Q 004211 116 VQILGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDVQRRAYLDAATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPT 195 (768)
Q Consensus 116 eel~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~ 195 (768)
-+..+++|+++++.++.+++.++.++|+|||++|++.||+++.+|++.||++++.+++||.|+|++|+..
T Consensus 39 ~~~~~~~l~~l~~~a~~~~g~~~~~vvisVP~~~~~~~r~a~~~a~~~aGl~~~~li~ep~Aaa~~~~~~---------- 108 (239)
T TIGR02529 39 FLGAVEIVRRLKDTLEQKLGIELTHAATAIPPGTIEGDPKVIVNVIESAGIEVLHVLDEPTAAAAVLQIK---------- 108 (239)
T ss_pred hHHHHHHHHHHHHHHHHHhCCCcCcEEEEECCCCCcccHHHHHHHHHHcCCceEEEeehHHHHHHHhcCC----------
Confidence 3678899999999998888888999999999999999999999999999999999999999999988632
Q ss_pred EEEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCCchhhHHHHHHHHHHHHHhhhcccCccCChHHHHHHHHHHHHHhhh
Q 004211 196 YVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEVLSSYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKV 275 (768)
Q Consensus 196 ~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~ 275 (768)
..+|+|+||||||+++++. |. ++.+. +..+||++||+.|++.+ +++. .+||++|+.
T Consensus 109 ~~~vvDiGggtt~i~i~~~--G~--i~~~~-~~~~GG~~it~~Ia~~~--------~i~~-----------~~AE~~K~~ 164 (239)
T TIGR02529 109 NGAVVDVGGGTTGISILKK--GK--VIYSA-DEPTGGTHMSLVLAGAY--------GISF-----------EEAEEYKRG 164 (239)
T ss_pred CcEEEEeCCCcEEEEEEEC--Ce--EEEEE-eeecchHHHHHHHHHHh--------CCCH-----------HHHHHHHHh
Confidence 2599999999999999764 43 33343 67899999999887544 2222 789999987
Q ss_pred cCCCCeeeEEEeccccCcceEEEecHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEecCCCChHHHHHHHHhh
Q 004211 276 LSANAEAPLNIECLMNEKDVKGFIRREEFEKLSSSLLERMRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSL 355 (768)
Q Consensus 276 Ls~~~~~~~~i~~l~~~~d~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~ 355 (768)
++ +.+++.+++.++++++...+++.|++. .++.|+|+||+|++|.+++.+++.
T Consensus 165 ~~----------------------~~~~~~~~i~~~~~~i~~~i~~~l~~~-----~~~~v~LtGG~a~ipgl~e~l~~~ 217 (239)
T TIGR02529 165 HK----------------------DEEEIFPVVKPVYQKMASIVKRHIEGQ-----GVKDLYLVGGACSFSGFADVFEKQ 217 (239)
T ss_pred cC----------------------CHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCEEEEECchhcchhHHHHHHHH
Confidence 54 145677899999999999999999865 457899999999999999999999
Q ss_pred cCCCCCCcCCchhHHHhhHHH
Q 004211 356 FNREPGRTINASECVARGCAL 376 (768)
Q Consensus 356 fg~~v~~~~n~~eava~GAa~ 376 (768)
||.++..+.||++++|.|||+
T Consensus 218 lg~~v~~~~~P~~~va~Gaa~ 238 (239)
T TIGR02529 218 LGLNVIKPQHPLYVTPLGIAM 238 (239)
T ss_pred hCCCcccCCCCCeehhheeec
Confidence 999999999999999999985
No 29
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=99.95 E-value=2e-26 Score=238.60 Aligned_cols=202 Identities=20% Similarity=0.301 Sum_probs=174.0
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCceeeccchHHHHHHhhhcccCCCCCCCc
Q 004211 116 VQILGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDVQRRAYLDAATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPT 195 (768)
Q Consensus 116 eel~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~ 195 (768)
.+.....|+++++.++.+++..+..++++||++|+..+|+++.+|++.||+++..+++||.|++.+|...
T Consensus 66 i~~a~~~i~~~~~~ae~~~g~~i~~v~~~vp~~~~~~~~~~~~~~~~~aGl~~~~ii~e~~A~a~~~~~~---------- 135 (267)
T PRK15080 66 FIGAVTIVRRLKATLEEKLGRELTHAATAIPPGTSEGDPRAIINVVESAGLEVTHVLDEPTAAAAVLGID---------- 135 (267)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcCeEEEEeCCCCCchhHHHHHHHHHHcCCceEEEechHHHHHHHhCCC----------
Confidence 4566678888889998888888999999999999999999999999999999999999999999877531
Q ss_pred EEEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCCchhhHHHHHHHHHHHHHhhhcccCccCChHHHHHHHHHHHHHhhh
Q 004211 196 YVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEVLSSYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKV 275 (768)
Q Consensus 196 ~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~ 275 (768)
..+++|||||||+++++. +|.+ ..+ .+..+||++||+.|++++. ++ +.+||++|+.
T Consensus 136 ~~~vvDIGggtt~i~v~~--~g~~--~~~-~~~~~GG~~it~~Ia~~l~--------i~-----------~~eAE~lK~~ 191 (267)
T PRK15080 136 NGAVVDIGGGTTGISILK--DGKV--VYS-ADEPTGGTHMSLVLAGAYG--------IS-----------FEEAEQYKRD 191 (267)
T ss_pred CcEEEEeCCCcEEEEEEE--CCeE--EEE-ecccCchHHHHHHHHHHhC--------CC-----------HHHHHHHHhc
Confidence 159999999999999975 4433 333 3789999999999987652 21 2788999976
Q ss_pred cCCCCeeeEEEeccccCcceEEEecHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEecCCCChHHHHHHHHhh
Q 004211 276 LSANAEAPLNIECLMNEKDVKGFIRREEFEKLSSSLLERMRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSL 355 (768)
Q Consensus 276 Ls~~~~~~~~i~~l~~~~d~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~ 355 (768)
++ +++++.++++++++++.+.+++.++.. .++.|+|+||+|++|.+++.+++.
T Consensus 192 ~~----------------------~~~~~~~ii~~~~~~i~~~i~~~l~~~-----~~~~IvLtGG~s~lpgl~e~l~~~ 244 (267)
T PRK15080 192 PK----------------------HHKEIFPVVKPVVEKMASIVARHIEGQ-----DVEDIYLVGGTCCLPGFEEVFEKQ 244 (267)
T ss_pred cC----------------------CHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCCEEEEECCcccchhHHHHHHHH
Confidence 53 357889999999999999999999864 578999999999999999999999
Q ss_pred cCCCCCCcCCchhHHHhhHHHHh
Q 004211 356 FNREPGRTINASECVARGCALQC 378 (768)
Q Consensus 356 fg~~v~~~~n~~eava~GAa~~a 378 (768)
||.++....||+.++|.|||++|
T Consensus 245 lg~~v~~~~~P~~~~a~Gaa~~~ 267 (267)
T PRK15080 245 TGLPVHKPQHPLFVTPLGIALSC 267 (267)
T ss_pred hCCCcccCCCchHHHHHHHHhhC
Confidence 99999999999999999999875
No 30
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=99.90 E-value=9.9e-22 Score=214.92 Aligned_cols=194 Identities=17% Similarity=0.233 Sum_probs=153.6
Q ss_pred HHHHHHHHHHHHcCCCceeeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCCc
Q 004211 152 VQRRAYLDAATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLG 231 (768)
Q Consensus 152 ~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lG 231 (768)
...+.+.+|++.||+++..++.||.|+|++|.... .....++|+|+||||||++++.. |.+. . .....+|
T Consensus 158 ~~v~~~~~~~~~aGl~~~~i~~~~~A~a~a~~~~~-----~~~~~~~vvDiG~gtt~i~i~~~--g~~~--~-~~~i~~G 227 (371)
T TIGR01174 158 TILRNLVKCVERCGLEVDNIVLSGLASAIAVLTED-----EKELGVCLIDIGGGTTDIAVYTG--GSIR--Y-TKVIPIG 227 (371)
T ss_pred HHHHHHHHHHHHcCCCeeeEEEhhhhhhhhhcCcc-----hhcCCEEEEEeCCCcEEEEEEEC--CEEE--E-Eeeecch
Confidence 44677888999999999999999999999885322 34567999999999999999863 4332 2 2357899
Q ss_pred hhhHHHHHHHHHHHHHhhhcccCccCChHHHHHHHHHHHHHhhhcCCC------CeeeEEEeccccCcceEEEecHHHHH
Q 004211 232 GRDFDEVLSSYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSAN------AEAPLNIECLMNEKDVKGFIRREEFE 305 (768)
Q Consensus 232 G~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~------~~~~~~i~~l~~~~d~~~~itr~~fe 305 (768)
|++||+.|.+.+. . .+.+||++|+.++.. .+..+.+..+. .+....|+|++|+
T Consensus 228 G~~it~~i~~~l~--------~-----------~~~~AE~lK~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~is~~~l~ 286 (371)
T TIGR01174 228 GNHITKDIAKALR--------T-----------PLEEAERIKIKYGCASIPLEGPDENIEIPSVG--ERPPRSLSRKELA 286 (371)
T ss_pred HHHHHHHHHHHhC--------C-----------CHHHHHHHHHHeeEecccCCCCCCEEEeccCC--CCCCeEEcHHHHH
Confidence 9999999876541 1 138899999999753 23456665543 3566799999999
Q ss_pred HHHHHHHHHHHHHHH-HHHHhCCCCCCCcCE-EEEecCCCChHHHHHHHHhhcCCCCCC------------cCCchhHHH
Q 004211 306 KLSSSLLERMRIPCQ-KALAGSGLNVEKIHS-VELVGSGSRIPAISRMLNSLFNREPGR------------TINASECVA 371 (768)
Q Consensus 306 ~~~~~~~~~i~~~i~-~~l~~~~~~~~~i~~-V~LvGG~srip~v~~~l~~~fg~~v~~------------~~n~~eava 371 (768)
+++++.++++...++ +.|++++.. .+++. |+|+||+|++|.+++.+++.||.++.. ..+|..++|
T Consensus 287 ~ii~~~~~ei~~~i~~~~L~~~~~~-~~i~~gIvLtGG~S~ipgi~~~l~~~~~~~vr~~~P~~~~~~~~~~~~p~~~~a 365 (371)
T TIGR01174 287 EIIEARAEEILEIVKQKELRKSGFK-EELNGGIVLTGGGAQLEGIVELAEKVFDNPVRIGLPQNIGGLTEDVNDPEYSTA 365 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCc-ccCCCEEEEeChHHcccCHHHHHHHHhCCCeEEECCCccCCchhhcCCcHHHHH
Confidence 999999999999997 999999876 57776 999999999999999999999855411 126788888
Q ss_pred hhHHHH
Q 004211 372 RGCALQ 377 (768)
Q Consensus 372 ~GAa~~ 377 (768)
.|.++|
T Consensus 366 ~Gl~~~ 371 (371)
T TIGR01174 366 VGLLLY 371 (371)
T ss_pred HHHHhC
Confidence 888764
No 31
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=99.88 E-value=2e-20 Score=206.92 Aligned_cols=195 Identities=14% Similarity=0.145 Sum_probs=148.7
Q ss_pred HHHHHHHHHcCCCceeeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCCchhh
Q 004211 155 RAYLDAATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRD 234 (768)
Q Consensus 155 ~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~ 234 (768)
+.+.+|++.|||++..++.||.|+|.++.... +....++++||||||||++++. +|.+ . ......+||++
T Consensus 169 ~~~~~a~~~aGl~v~~iv~ep~Aaa~a~l~~~-----e~~~gv~vvDiGggtTdisv~~--~G~l--~-~~~~i~~GG~~ 238 (420)
T PRK09472 169 KNIVKAVERCGLKVDQLIFAGLASSYAVLTED-----ERELGVCVVDIGGGTMDIAVYT--GGAL--R-HTKVIPYAGNV 238 (420)
T ss_pred HHHHHHHHHcCCeEeeEEehhhHHHHHhcChh-----hhhcCeEEEEeCCCceEEEEEE--CCEE--E-EEeeeechHHH
Confidence 44567999999999999999999999875432 4467799999999999999997 4443 2 22357899999
Q ss_pred HHHHHHHHHHHHHhhhcccCccCChHHHHHHHHHHHHHhhhcCC------CCeeeEEEeccccCcceEEEecHHHHHHHH
Q 004211 235 FDEVLSSYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSA------NAEAPLNIECLMNEKDVKGFIRREEFEKLS 308 (768)
Q Consensus 235 ~d~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~------~~~~~~~i~~l~~~~d~~~~itr~~fe~~~ 308 (768)
|++.|+..+. + . +.+||++|..+.. .....+.++.+.+. ....++|.+|.+++
T Consensus 239 it~dIa~~l~--------i--~---------~~~AE~lK~~~g~~~~~~~~~~~~i~v~~~~~~--~~~~i~~~~l~~ii 297 (420)
T PRK09472 239 VTSDIAYAFG--------T--P---------PSDAEAIKVRHGCALGSIVGKDESVEVPSVGGR--PPRSLQRQTLAEVI 297 (420)
T ss_pred HHHHHHHHhC--------c--C---------HHHHHHHHHhcceeccccCCCCceeEecCCCCC--CCeEEcHHHHHHHH
Confidence 9999986552 1 1 2789999976532 12345666654322 22489999999999
Q ss_pred HHHHHHHHHHHHH-------HHHhCCCCCCCcCEEEEecCCCChHHHHHHHHhhcCCCCCC------------cCCchhH
Q 004211 309 SSLLERMRIPCQK-------ALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPGR------------TINASEC 369 (768)
Q Consensus 309 ~~~~~~i~~~i~~-------~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~fg~~v~~------------~~n~~ea 369 (768)
.+.++++...+++ .+..+++....++.|+|+||+|++|.|++++++.|+.++.. ..+|..+
T Consensus 298 ~~r~~ei~~~i~~~l~~~~~~l~~~g~~~~~~~givLtGG~a~lpgi~e~~~~~f~~~vri~~P~~~~g~~~~~~~P~~a 377 (420)
T PRK09472 298 EPRYTELLNLVNEEILQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFHTQVRIGAPLNITGLTDYAQEPYYS 377 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCEEEEeCchhccccHHHHHHHHhCCCeEEeCCcccCCChhhcCCcHHH
Confidence 9966666666654 55667877778999999999999999999999999855422 2489999
Q ss_pred HHhhHHHHhhH
Q 004211 370 VARGCALQCAM 380 (768)
Q Consensus 370 va~GAa~~a~~ 380 (768)
+|.|.++++..
T Consensus 378 ta~Gl~~~~~~ 388 (420)
T PRK09472 378 TAVGLLHYGKE 388 (420)
T ss_pred HHHHHHHHhhh
Confidence 99999999763
No 32
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=99.76 E-value=2.6e-16 Score=169.09 Aligned_cols=205 Identities=20% Similarity=0.248 Sum_probs=163.1
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCCceeeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEeeCCeEEE
Q 004211 142 VIGVPCYLTDVQRRAYLDAATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKI 221 (768)
Q Consensus 142 VitVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~v 221 (768)
++|+|..+ -+.+.+|++.+|+++..++.+|.|+|.+..... ++.-.++++||||||||++++.-. . +
T Consensus 159 vit~~~~~----~~Nl~k~v~r~gl~v~~i~l~plAsa~a~L~~d-----EkelGv~lIDiG~GTTdIai~~~G--~--l 225 (418)
T COG0849 159 VITGPKNI----LENLEKCVERAGLKVDNIVLEPLASALAVLTED-----EKELGVALIDIGGGTTDIAIYKNG--A--L 225 (418)
T ss_pred EEEcchHH----HHHHHHHHHHhCCCeeeEEEehhhhhhhccCcc-----cHhcCeEEEEeCCCcEEEEEEECC--E--E
Confidence 44555433 466889999999999999999999998665432 567889999999999999998744 3 3
Q ss_pred EEEeCCCCCchhhHHHHHHHHHHHHHhhhcccCccCChHHHHHHHHHHHHHhhhcCCC------CeeeEEEeccccCcce
Q 004211 222 LSHAFDESLGGRDFDEVLSSYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSAN------AEAPLNIECLMNEKDV 295 (768)
Q Consensus 222 l~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~------~~~~~~i~~l~~~~d~ 295 (768)
..+ +..++||++++..|+.-|.-.| ..||++|...... .+..+.++...++.
T Consensus 226 ~~~-~~ipvgG~~vT~DIa~~l~t~~-------------------~~AE~iK~~~g~a~~~~~~~~~~i~v~~vg~~~-- 283 (418)
T COG0849 226 RYT-GVIPVGGDHVTKDIAKGLKTPF-------------------EEAERIKIKYGSALISLADDEETIEVPSVGSDI-- 283 (418)
T ss_pred EEE-eeEeeCccHHHHHHHHHhCCCH-------------------HHHHHHHHHcCccccCcCCCcceEecccCCCcc--
Confidence 333 3679999999999997664322 7899999988432 33456676654433
Q ss_pred EEEecHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEecCCCChHHHHHHHHhhcCCCC--CC----------c
Q 004211 296 KGFIRREEFEKLSSSLLERMRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNREP--GR----------T 363 (768)
Q Consensus 296 ~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~fg~~v--~~----------~ 363 (768)
...++|..+.+++++-+.++..+++..|+++++...-...|+|+||++.+|++.+..++.|+.++ .. .
T Consensus 284 ~~~~t~~~ls~II~aR~~Ei~~lV~~~l~~~g~~~~~~~gvVlTGG~a~l~Gi~elA~~if~~~vRig~P~~~~Gl~d~~ 363 (418)
T COG0849 284 PRQVTRSELSEIIEARVEEILELVKAELRKSGLPNHLPGGVVLTGGGAQLPGIVELAERIFGRPVRLGVPLNIVGLTDIA 363 (418)
T ss_pred cchhhHHHHHHHHHhhHHHHHHHHHHHHHHcCccccCCCeEEEECchhcCccHHHHHHHhcCCceEeCCCccccCchhhc
Confidence 66899999999999999999999999999999976667999999999999999999999997433 22 2
Q ss_pred CCchhHHHhhHHHHhhHh
Q 004211 364 INASECVARGCALQCAML 381 (768)
Q Consensus 364 ~n~~eava~GAa~~a~~l 381 (768)
.+|..+.|.|..++++..
T Consensus 364 ~~p~fs~avGl~~~~~~~ 381 (418)
T COG0849 364 RNPAFSTAVGLLLYGALM 381 (418)
T ss_pred cCchhhhhHHHHHHHhhc
Confidence 368899999999888754
No 33
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=99.66 E-value=2.3e-15 Score=165.09 Aligned_cols=301 Identities=15% Similarity=0.148 Sum_probs=188.4
Q ss_pred EEEEEcCccceEEEEEEcCCceEEEeCCCCCccceEEEEeeC----------CceeecHHHHhhhhhCCcchHhHHHHhc
Q 004211 3 VVGFDIGNENCVIAAVKQGGMLDVLLNDESKRETPTVVSFSE----------KQRFLGSAGAASAMMNPKSTISQVKRLL 72 (768)
Q Consensus 3 viGID~GTt~s~va~~~~g~~~~ii~n~~~~r~~Ps~V~~~~----------~~~~~G~~A~~~~~~~~~~~~~~~k~ll 72 (768)
+|.||+||.++++++..++.|.-++ ||+|+... ....+|.+|......
T Consensus 1 ~iViD~Gs~~~r~G~a~~~~p~~~~---------ps~v~~~~~~~~~~~~~~~~~~~G~~a~~~~~~------------- 58 (371)
T cd00012 1 AVVIDNGSGTIKAGFAGEDAPRVVF---------PSCVGRPKHQSVMVGAGDKDYFVGEEALEKRGL------------- 58 (371)
T ss_pred CEEEECCCCeEEEEeCCCCCCceEe---------eccceeecCcccccccCCCceEEchhhhhCCCC-------------
Confidence 3789999999999998766544444 66665542 235678777432100
Q ss_pred CCCCCChHHHhhhccCCceeeecCCCCEEEEEEecCceeEecHHHHHHHHHHHHHHHHHhhccCCCCeEEEEeCCCCCHH
Q 004211 73 GRKFREDDVQKDLKLFPFETCESHDGGILIMLEYLGETHKFTPVQILGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDV 152 (768)
Q Consensus 73 g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~ 152 (768)
+. .-..|+ .+|.+ .. -+.+..+++++....-. ....-..+++++|..++..
T Consensus 59 ~~----------~~~~P~-----~~G~i------------~d-~~~~e~~~~~~~~~~l~-~~~~~~~vvl~~p~~~~~~ 109 (371)
T cd00012 59 GL----------ELIYPI-----EHGIV------------VD-WDDMEKIWDHLFFNELK-VNPEEHPVLLTEPPLNPKS 109 (371)
T ss_pred ce----------EEcccc-----cCCEE------------eC-HHHHHHHHHHHHHHhcC-CCCCCCceEEecCCCCCHH
Confidence 00 011121 13322 11 13344555555443211 1223467999999999988
Q ss_pred HHHHHHHH-HHHcCCCceeeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCCc
Q 004211 153 QRRAYLDA-ATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLG 231 (768)
Q Consensus 153 qr~~l~~A-a~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lG 231 (768)
+|+.+.+. .+..|++.+.++++|.+|+++++. .+.+|+|+|+++|+++.+. +|.+ +........+|
T Consensus 110 ~r~~~~e~lfe~~~~~~v~~~~~~~~a~~~~g~----------~~~lVVDiG~~~t~i~pv~--~G~~-~~~~~~~~~~G 176 (371)
T cd00012 110 NREKTTEIMFETFNVPALYVAIQAVLSLYASGR----------TTGLVVDSGDGVTHVVPVY--DGYV-LPHAIKRLDLA 176 (371)
T ss_pred HHHHHHHHhhccCCCCEEEEechHHHHHHhcCC----------CeEEEEECCCCeeEEEEEE--CCEE-chhhheecccc
Confidence 88888775 677999999999999999988753 5789999999999998875 3433 22223357899
Q ss_pred hhhHHHHHHHHHHHHHhhhcccCccCChHHHHHHHHHHHHHhhhcCCCCe---ee----------EE-EeccccCcceEE
Q 004211 232 GRDFDEVLSSYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANAE---AP----------LN-IECLMNEKDVKG 297 (768)
Q Consensus 232 G~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~---~~----------~~-i~~l~~~~d~~~ 297 (768)
|+++|+.|.+++..... ..+.. .-...++.+|+.+..-.. .. .. .-.+-++ ..+
T Consensus 177 G~~l~~~l~~~l~~~~~---~~~~~-------~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~lpd~--~~i 244 (371)
T cd00012 177 GRDLTRYLKELLRERGY---ELNSS-------DEREIVRDIKEKLCYVALDIEEEQDKSAKETSLLEKTYELPDG--RTI 244 (371)
T ss_pred HHHHHHHHHHHHHhcCC---Cccch-------hHHHHHHHHHHhheeecCCHHHHHHhhhccCCccceeEECCCC--eEE
Confidence 99999999998865421 01111 112456666766532110 00 00 0111122 234
Q ss_pred EecHHHHHHHHHHHHH---------HHHHHHHHHHHhCCC--CCCCcCEEEEecCCCChHHHHHHHHhhcCC--------
Q 004211 298 FIRREEFEKLSSSLLE---------RMRIPCQKALAGSGL--NVEKIHSVELVGSGSRIPAISRMLNSLFNR-------- 358 (768)
Q Consensus 298 ~itr~~fe~~~~~~~~---------~i~~~i~~~l~~~~~--~~~~i~~V~LvGG~srip~v~~~l~~~fg~-------- 358 (768)
.++.+.| .+++.+++ .+.+.|.+++..... ...-++.|+|+||+|++|.+.++|.+.++.
T Consensus 245 ~~~~er~-~~~E~lF~p~~~~~~~~~i~~~i~~~i~~~~~~~~~~l~~~Ivl~GG~s~~~gl~~rl~~el~~~~~~~~~~ 323 (371)
T cd00012 245 KVGNERF-RAPEILFNPSLIGSEQVGISEAIYSSINKCDIDLRKDLYSNIVLSGGSTLFPGFGERLQKELLKLAPPSKDT 323 (371)
T ss_pred EEChHHh-hChHhcCChhhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCEEEeCCccCCcCHHHHHHHHHHHhCCcccce
Confidence 5665544 33333333 677788888877532 222357899999999999999999988851
Q ss_pred --CCCCcCCchhHHHhhHHHHhhH
Q 004211 359 --EPGRTINASECVARGCALQCAM 380 (768)
Q Consensus 359 --~v~~~~n~~eava~GAa~~a~~ 380 (768)
.+....+|..++-+||+++|..
T Consensus 324 ~~~~~~~~~~~~~aw~G~si~as~ 347 (371)
T cd00012 324 KVKVIAPPERKYSVWLGGSILASL 347 (371)
T ss_pred EEEEccCCCccccEEeCchhhcCc
Confidence 1234567889999999999864
No 34
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=99.66 E-value=3.5e-16 Score=145.13 Aligned_cols=196 Identities=22% Similarity=0.295 Sum_probs=157.7
Q ss_pred HHHHHHHHHHHhhccCCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCceeeccchHHHHHHhhhcccCCCCCCCcEEEEE
Q 004211 121 MLLSNLKQITEKNIKIPISNCVIGVPCYLTDVQRRAYLDAATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFV 200 (768)
Q Consensus 121 ~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~ 200 (768)
.+.+++++.+++.+|..+....-++|+.-.+...+...+..+.||+.++..++||+|||.-.++. .-.|+
T Consensus 76 eiVrrlkd~lEk~lGi~~tha~taiPPGt~~~~~ri~iNViESAGlevl~vlDEPTAaa~vL~l~----------dg~VV 145 (277)
T COG4820 76 EIVRRLKDTLEKQLGIRFTHAATAIPPGTEQGDPRISINVIESAGLEVLHVLDEPTAAADVLQLD----------DGGVV 145 (277)
T ss_pred HHHHHHHHHHHHhhCeEeeeccccCCCCccCCCceEEEEeecccCceeeeecCCchhHHHHhccC----------CCcEE
Confidence 46778889999999999999999999999888888888999999999999999999999544332 34789
Q ss_pred EeCCceEEEEEEEeeCCeEEEEEEeCCCCCchhhHHHHHHHHHHHHHhhhcccCccCChHHHHHHHHHHHHHhhhcCCCC
Q 004211 201 DIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEVLSSYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANA 280 (768)
Q Consensus 201 D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~ 280 (768)
|+|||||-+|+++-. +|+.+. |..-||.++...|+- .|++++ ++||..|..-...
T Consensus 146 DiGGGTTGIsi~kkG----kViy~A-DEpTGGtHmtLvlAG--------~ygi~~-----------EeAE~~Kr~~k~~- 200 (277)
T COG4820 146 DIGGGTTGISIVKKG----KVIYSA-DEPTGGTHMTLVLAG--------NYGISL-----------EEAEQYKRGHKKG- 200 (277)
T ss_pred EeCCCcceeEEEEcC----cEEEec-cCCCCceeEEEEEec--------ccCcCH-----------hHHHHhhhccccc-
Confidence 999999999999855 466666 899999999877763 345543 6777777432111
Q ss_pred eeeEEEeccccCcceEEEecHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEecCCCChHHHHHHHHhhcCCCC
Q 004211 281 EAPLNIECLMNEKDVKGFIRREEFEKLSSSLLERMRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNREP 360 (768)
Q Consensus 281 ~~~~~i~~l~~~~d~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~fg~~v 360 (768)
+|.-..+.|+++++.+.+.+.++..++ ..+.|+||+|.-|.+.+..++.|+.++
T Consensus 201 ---------------------~Eif~~v~PV~eKMAeIv~~hie~~~i-----~dl~lvGGac~~~g~e~~Fe~~l~l~v 254 (277)
T COG4820 201 ---------------------EEIFPVVKPVYEKMAEIVARHIEGQGI-----TDLWLVGGACMQPGVEELFEKQLALQV 254 (277)
T ss_pred ---------------------hhcccchhHHHHHHHHHHHHHhccCCC-----cceEEecccccCccHHHHHHHHhcccc
Confidence 122235679999999999999988764 459999999999999999999999999
Q ss_pred CCcCCchhHHHhhHHHH
Q 004211 361 GRTINASECVARGCALQ 377 (768)
Q Consensus 361 ~~~~n~~eava~GAa~~ 377 (768)
..+..|....-+|-|+.
T Consensus 255 ~~P~~p~y~TPLgIA~s 271 (277)
T COG4820 255 HLPQHPLYMTPLGIASS 271 (277)
T ss_pred ccCCCcceechhhhhhc
Confidence 88888888777777653
No 35
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=99.57 E-value=2.9e-14 Score=156.64 Aligned_cols=301 Identities=14% Similarity=0.163 Sum_probs=180.4
Q ss_pred eEEEEEcCccceEEEEEEcCCceEEEeCCCCCccceEEEEeeCCc---------eeecHHHHhhhhhCCcchHhHHHHhc
Q 004211 2 SVVGFDIGNENCVIAAVKQGGMLDVLLNDESKRETPTVVSFSEKQ---------RFLGSAGAASAMMNPKSTISQVKRLL 72 (768)
Q Consensus 2 ~viGID~GTt~s~va~~~~g~~~~ii~n~~~~r~~Ps~V~~~~~~---------~~~G~~A~~~~~~~~~~~~~~~k~ll 72 (768)
++|+||+||.++++++.....|.-+ +||+|+...+. .++|.+|....
T Consensus 2 ~~iviD~Gs~~~k~G~~~~~~P~~~---------~ps~v~~~~~~~~~~~~~~~~~~G~~a~~~~--------------- 57 (373)
T smart00268 2 PAIVIDNGSGTIKAGFAGEDEPQVV---------FPSIVGRPKDGKGMVGDAKDTFVGDEAQEKR--------------- 57 (373)
T ss_pred CeEEEECCCCcEEEeeCCCCCCcEE---------ccceeeEecccccccCCCcceEecchhhhcC---------------
Confidence 4789999999999999766663323 48888765332 35676662110
Q ss_pred CCCCCChHHHhhhccCCceeeecCCCCEEEEEEecCceeEecHHHHHHHHHHHHHHHHHhhccCCCCeEEEEeCCCCCHH
Q 004211 73 GRKFREDDVQKDLKLFPFETCESHDGGILIMLEYLGETHKFTPVQILGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDV 152 (768)
Q Consensus 73 g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~ 152 (768)
+.. .-..|+ .+|.+ .--+.+..+++++....- .....-..++|+.|...+..
T Consensus 58 ~~~---------~~~~P~-----~~G~i-------------~d~~~~e~i~~~~~~~~l-~~~~~~~~vll~~p~~~~~~ 109 (373)
T smart00268 58 GGL---------ELKYPI-----EHGIV-------------ENWDDMEKIWDYTFFNEL-RVEPEEHPVLLTEPPMNPKS 109 (373)
T ss_pred CCc---------eecCCC-----cCCEE-------------eCHHHHHHHHHHHHhhhc-CCCCccCeeEEecCCCCCHH
Confidence 000 011222 13432 122445556666655311 11123357999999999999
Q ss_pred HHHHHHHHH-HHcCCCceeeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCCc
Q 004211 153 QRRAYLDAA-TIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLG 231 (768)
Q Consensus 153 qr~~l~~Aa-~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lG 231 (768)
+|+.+.+.+ +..|++.+.++++|.+|+++++ ..+.+|+|+|+++|+++.+. +|.. +........+|
T Consensus 110 ~r~~~~e~lfE~~~~~~v~~~~~~~~a~~~~g----------~~~~lVVDiG~~~t~v~pv~--~G~~-~~~~~~~~~~G 176 (373)
T smart00268 110 NREKILEIMFETFNFPALYIAIQAVLSLYASG----------RTTGLVIDSGDGVTHVVPVV--DGYV-LPHAIKRIDIA 176 (373)
T ss_pred HHHHHHHHhhccCCCCeEEEeccHHHHHHhCC----------CCEEEEEecCCCcceEEEEE--CCEE-chhhheeccCc
Confidence 999998886 5779999999999999998775 35789999999999999886 3433 22222346899
Q ss_pred hhhHHHHHHHHHHHHHhhhcccCccCChHHHHHHHHHHHHHhhhcCCCC---e------------eeEEEe-ccccCcce
Q 004211 232 GRDFDEVLSSYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANA---E------------APLNIE-CLMNEKDV 295 (768)
Q Consensus 232 G~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~---~------------~~~~i~-~l~~~~d~ 295 (768)
|.++|+.|.+++...- ...+. ..-...++.+|+.+..-. . ...... .+.++..
T Consensus 177 G~~l~~~l~~~l~~~~---~~~~~-------~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~lpdg~~- 245 (373)
T smart00268 177 GRDLTDYLKELLSERG---YQFNS-------SAEFEIVREIKEKLCYVAEDFEKEMKKARESSESSKLEKTYELPDGNT- 245 (373)
T ss_pred HHHHHHHHHHHHHhcC---CCCCc-------HHHHHHHHHhhhheeeecCChHHHHHHhhhcccccccceeEECCCCCE-
Confidence 9999999998886510 00111 011234555565542110 0 000000 1112222
Q ss_pred EEEecHHHHHHHHHHHH---------HHHHHHHHHHHHhCCCC--CCCcCEEEEecCCCChHHHHHHHHhhcC------C
Q 004211 296 KGFIRREEFEKLSSSLL---------ERMRIPCQKALAGSGLN--VEKIHSVELVGSGSRIPAISRMLNSLFN------R 358 (768)
Q Consensus 296 ~~~itr~~fe~~~~~~~---------~~i~~~i~~~l~~~~~~--~~~i~~V~LvGG~srip~v~~~l~~~fg------~ 358 (768)
+.+..+.| .+++.++ ..+.+.|.+++..+... ..-.+.|+|+||+|++|.+.++|.+.+. .
T Consensus 246 -~~~~~er~-~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~~d~r~~l~~nIvltGG~s~i~Gl~~RL~~el~~~~p~~~ 323 (373)
T smart00268 246 -IKVGNERF-RIPEILFKPELIGLEQKGIHELVYESIQKCDIDVRKDLYENIVLSGGSTLIPGFGERLEKELKQLAPKKL 323 (373)
T ss_pred -EEEChHHe-eCchhcCCchhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCeEeecccccCcCHHHHHHHHHHHhCCCCc
Confidence 23333333 2223233 35667777777765321 1113679999999999999999988872 1
Q ss_pred --CCCCcCCchhHHHhhHHHHhhH
Q 004211 359 --EPGRTINASECVARGCALQCAM 380 (768)
Q Consensus 359 --~v~~~~n~~eava~GAa~~a~~ 380 (768)
.+..+.++..++=+||+++|..
T Consensus 324 ~v~v~~~~~~~~~~W~G~silas~ 347 (373)
T smart00268 324 KVKVIAPPERKYSVWLGGSILASL 347 (373)
T ss_pred eeEEecCCCCccceEeCcccccCc
Confidence 1233445566777788877754
No 36
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=99.57 E-value=4.4e-13 Score=144.10 Aligned_cols=209 Identities=15% Similarity=0.162 Sum_probs=139.9
Q ss_pred EEEEeCCCCCHHHH-HHHHHHHHHc------------CCCceeeccchHHHHHHhhhcccCC---CCCCCcEEEEEEeCC
Q 004211 141 CVIGVPCYLTDVQR-RAYLDAATIA------------GLKPLRLMHDCTATALGYGIYKTDF---SNVGPTYVVFVDIGH 204 (768)
Q Consensus 141 ~VitVPa~~~~~qr-~~l~~Aa~~A------------Gl~~~~li~Ep~Aaal~y~~~~~~~---~~~~~~~vlv~D~Gg 204 (768)
++...|..+-..++ +.+++..... -+..+.++.+|.+|.+++....... .......++|+|+|+
T Consensus 115 l~tGLPv~~~~~~~~~~l~k~l~~~~~v~~~g~~~~I~i~~V~V~pQ~~ga~~~~~~~~~g~~~~~~~~~~~ilvIDIG~ 194 (344)
T PRK13917 115 VATGMPSEEIGTDKVAKFEKLLNKSRLIEINGIAVTINVKGVKVVAQPMGTLLDLYLDNDGVVADKAFEEGKVSVIDFGS 194 (344)
T ss_pred EEEcCCHHHHHHHHHHHHHHHhcCceEEEECCEEEEEEEEEEEEecccHHHHHHHHhcccCcccchhcccCcEEEEEcCC
Confidence 44599988854443 6676654321 1234678899999988877643211 012345789999999
Q ss_pred ceEEEEEEEeeCCeEEEEEEeCCCCCchhhHHHHHHHHHHHHHhhhcccCccCChHHHHHHHHHHHHHhhhcCCCCeeeE
Q 004211 205 CDTQVCVASYENGHMKILSHAFDESLGGRDFDEVLSSYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANAEAPL 284 (768)
Q Consensus 205 gT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~~ 284 (768)
||||++++. ++.+ +...++....|..++.+.|.+++..+. ++..+. . .++ +++ |... .+
T Consensus 195 ~TtD~~v~~--~~~~-~~~~s~s~~~G~~~~~~~I~~~i~~~~---~~~~~~--~---~~i----e~~---l~~g---~i 253 (344)
T PRK13917 195 GTTDLDTIQ--NLKR-VEEESFVIPKGTIDVYKRIASHISKKE---EGASIT--P---YML----EKG---LEYG---AC 253 (344)
T ss_pred CcEEEEEEe--CcEE-cccccccccchHHHHHHHHHHHHHhhC---CCCCCC--H---HHH----HHH---HHcC---cE
Confidence 999999986 4444 334445678999999999998886432 233222 1 112 222 2111 11
Q ss_pred EEeccccCcceEEEecHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEecCCCChHHHHHHHHhhcCCCCCCcC
Q 004211 285 NIECLMNEKDVKGFIRREEFEKLSSSLLERMRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPGRTI 364 (768)
Q Consensus 285 ~i~~l~~~~d~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~fg~~v~~~~ 364 (768)
.+. .+.. +.+ ++++.++++.+++++...+...+.. ..+++.|+|+||++++ +++.|++.|+. +....
T Consensus 254 ~~~---~~~~--id~-~~~~~~~~~~~~~~i~~~i~~~~~~----~~~~d~IiL~GGGA~l--l~~~lk~~f~~-~~~~~ 320 (344)
T PRK13917 254 KLN---QKTV--IDF-KDEFYKEQDSVIDEVMSGFEIAVGN----INSFDRVIVTGGGANI--FFDSLSHWYSD-VEKAD 320 (344)
T ss_pred EeC---CCce--Eeh-HHHHHHHHHHHHHHHHHHHHHHhcc----cCCCCEEEEECCcHHH--HHHHHHHHcCC-eEEcC
Confidence 111 1111 122 4667789999999999999888854 2478999999999988 88999999984 35678
Q ss_pred CchhHHHhhHHHHhhHhcC
Q 004211 365 NASECVARGCALQCAMLSP 383 (768)
Q Consensus 365 n~~eava~GAa~~a~~ls~ 383 (768)
||..|.|+|...+|..+.+
T Consensus 321 ~p~~ANa~G~~~~g~~~~~ 339 (344)
T PRK13917 321 ESQFANVRGYYKYGELLKN 339 (344)
T ss_pred ChHHHHHHHHHHHHHHHhc
Confidence 9999999999999876543
No 37
>PTZ00280 Actin-related protein 3; Provisional
Probab=99.42 E-value=2.5e-11 Score=134.68 Aligned_cols=206 Identities=13% Similarity=0.073 Sum_probs=130.2
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHH-HHcCCCceeeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEeeCC
Q 004211 139 SNCVIGVPCYLTDVQRRAYLDAA-TIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENG 217 (768)
Q Consensus 139 ~~~VitVPa~~~~~qr~~l~~Aa-~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~ 217 (768)
..+++|.|+.++..+|+.+.+.+ +..|++-+.+..+|.+++++++............+-||+|+|+|+|+++.+. +|
T Consensus 103 ~~vllte~~~~~~~~Re~l~e~lFE~~~~p~i~~~~~~~lslya~~~~~~~~~~~g~~tglVVDiG~~~T~i~PV~--~G 180 (414)
T PTZ00280 103 HYFILTEPPMNPPENREYTAEIMFETFNVKGLYIAVQAVLALRASWTSKKAKELGGTLTGTVIDSGDGVTHVIPVV--DG 180 (414)
T ss_pred CceEEeeCCCCcHHHHHHHHHHHhhccCCCeEEEecCHHHhHhhhcccccccccCCceeEEEEECCCCceEEEEEE--CC
Confidence 46899999999999999888775 5568999999999999998763321100001234679999999999998775 34
Q ss_pred eEEEEEEeCCCCCchhhHHHHHHHHHHHHHhhhcccCccCChHHHHHHHHHHHHHhhhcCCCCe----------------
Q 004211 218 HMKILSHAFDESLGGRDFDEVLSSYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANAE---------------- 281 (768)
Q Consensus 218 ~~~vl~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~---------------- 281 (768)
.. +........+||++++..|.+.+..+. ..+... .....++.+|+.++.-..
T Consensus 181 ~~-l~~~~~~~~~GG~~lt~~L~~lL~~~~-----~~~~~~-----~~~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~ 249 (414)
T PTZ00280 181 YV-IGSSIKHIPLAGRDITNFIQQMLRERG-----EPIPAE-----DILLLAQRIKEKYCYVAPDIAKEFEKYDSDPKNH 249 (414)
T ss_pred EE-cccceEEecCcHHHHHHHHHHHHHHcC-----CCCCcH-----HHHHHHHHHHHhcCcccCcHHHHHHHhhcCcccc
Confidence 32 222222457999999999999886431 112110 112446667776542110
Q ss_pred -eeEEEeccccCcceEEEecHHHHH---HHHHHHH------HHHHHHHHHHHHhCCCC--CCCcCEEEEecCCCChHHHH
Q 004211 282 -APLNIECLMNEKDVKGFIRREEFE---KLSSSLL------ERMRIPCQKALAGSGLN--VEKIHSVELVGSGSRIPAIS 349 (768)
Q Consensus 282 -~~~~i~~l~~~~d~~~~itr~~fe---~~~~~~~------~~i~~~i~~~l~~~~~~--~~~i~~V~LvGG~srip~v~ 349 (768)
..+..+...++....+.|..+.|. -++.|-+ ..+.+.|.+++.++... ..-.+.|+|+||+|.+|.+.
T Consensus 250 ~~~~~~~d~~~g~~~~i~l~~erf~~~E~LF~P~~~~~~~~~gl~e~i~~sI~~~~~d~r~~L~~nIvL~GG~s~~~Gf~ 329 (414)
T PTZ00280 250 FKKYTAVNSVTKKPYTVDVGYERFLGPEMFFHPEIFSSEWTTPLPEVVDDAIQSCPIDCRRPLYKNIVLSGGSTMFKGFD 329 (414)
T ss_pred cceEECCCCCCCCccEEEechHHhcCcccccChhhcCCccCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCcccCcCHH
Confidence 011222111233346777777664 2333321 14566777777765322 22246799999999999999
Q ss_pred HHHHhhcC
Q 004211 350 RMLNSLFN 357 (768)
Q Consensus 350 ~~l~~~fg 357 (768)
++|++.+.
T Consensus 330 eRL~~El~ 337 (414)
T PTZ00280 330 KRLQRDVR 337 (414)
T ss_pred HHHHHHHH
Confidence 99998875
No 38
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=99.31 E-value=9.4e-11 Score=126.73 Aligned_cols=182 Identities=24% Similarity=0.301 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHHcCCCceeeccchHHHHHHhhhcccCCCC-CCCcEEEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCC
Q 004211 152 VQRRAYLDAATIAGLKPLRLMHDCTATALGYGIYKTDFSN-VGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESL 230 (768)
Q Consensus 152 ~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~-~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~l 230 (768)
..-+.+.++++.|||++..+--++.|.+-.|.......+. .....++++|+|+.++.++++. +|.+ +.+ ....+
T Consensus 136 ~~v~~~~~~~~~aGL~~~~vDv~~~Al~r~~~~~~~~~~~~~~~~~~~lvdiG~~~t~~~i~~--~g~~--~f~-R~i~~ 210 (340)
T PF11104_consen 136 EIVESYVELFEEAGLKPVAVDVEAFALARLFEFLEPQLPDEEDAETVALVDIGASSTTVIIFQ--NGKP--IFS-RSIPI 210 (340)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEEHHHHGGGGGHHHHHTST----T-EEEEEEE-SS-EEEEEEE--TTEE--EEE-EEES-
T ss_pred HHHHHHHHHHHHcCCceEEEeehHHHHHHHHHHHHHhCCcccccceEEEEEecCCeEEEEEEE--CCEE--EEE-EEEee
Confidence 4456777889999999988866777766555443222222 2456899999999999999976 4443 222 25689
Q ss_pred chhhHHHHHHHHHHHHHhhhcccCccCChHHHHHHHHHHHHHhhhcCCCCeeeEEEeccccCcceEEEecHHHHHHHHHH
Q 004211 231 GGRDFDEVLSSYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANAEAPLNIECLMNEKDVKGFIRREEFEKLSSS 310 (768)
Q Consensus 231 GG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~~~i~~l~~~~d~~~~itr~~fe~~~~~ 310 (768)
||.++++.|++.+.-.+ .+|++.|..-+-.. +...+.+.+
T Consensus 211 G~~~l~~~i~~~~~i~~-------------------~~Ae~~k~~~~l~~---------------------~~~~~~l~~ 250 (340)
T PF11104_consen 211 GGNDLTEAIARELGIDF-------------------EEAEELKRSGGLPE---------------------EYDQDALRP 250 (340)
T ss_dssp SHHHHHHHHHHHTT--H-------------------HHHHHHHHHT---------------------------HHHHHHH
T ss_pred CHHHHHHHHHHhcCCCH-------------------HHHHHHHhcCCCCc---------------------chHHHHHHH
Confidence 99999999997652211 56666665421100 223445556
Q ss_pred HHHHHHHHHHHHHHh--CCCCCCCcCEEEEecCCCChHHHHHHHHhhcCCCC---------CCcC----------CchhH
Q 004211 311 LLERMRIPCQKALAG--SGLNVEKIHSVELVGSGSRIPAISRMLNSLFNREP---------GRTI----------NASEC 369 (768)
Q Consensus 311 ~~~~i~~~i~~~l~~--~~~~~~~i~~V~LvGG~srip~v~~~l~~~fg~~v---------~~~~----------n~~ea 369 (768)
.++++..-|.+.++- +......|+.|+|+||++++|.+.+.|++.+|.++ ..+. .|..+
T Consensus 251 ~~~~l~~EI~rsl~~y~~~~~~~~i~~I~L~Ggga~l~gL~~~l~~~l~~~v~~~~p~~~~~~~~~~~~~~~~~~~~~~a 330 (340)
T PF11104_consen 251 FLEELAREIRRSLDFYQSQSGGESIERIYLSGGGARLPGLAEYLSEELGIPVEVINPFKNIKLDPKINSEYLQEDAPQFA 330 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHH------SEEEEESGGGGSTTHHHHHHHHHTSEEEE--GGGGSB--TTS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCEEEEECCccchhhHHHHHHHHHCCceEEcChHHhCccCcccChhhhhhhhhHHH
Confidence 666666666666553 12234479999999999999999999999998543 1111 26678
Q ss_pred HHhhHHHHh
Q 004211 370 VARGCALQC 378 (768)
Q Consensus 370 va~GAa~~a 378 (768)
+|.|.|+..
T Consensus 331 vA~GLAlR~ 339 (340)
T PF11104_consen 331 VALGLALRG 339 (340)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHhhcC
Confidence 999998764
No 39
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=99.30 E-value=3.4e-11 Score=133.47 Aligned_cols=309 Identities=15% Similarity=0.187 Sum_probs=176.9
Q ss_pred eEEEEEcCccceEEEEEEcCCceEEEeCCCCCccceEEEEeeCCc-----eeecHHHHhhhhhCCcchHhHHHHhcCCCC
Q 004211 2 SVVGFDIGNENCVIAAVKQGGMLDVLLNDESKRETPTVVSFSEKQ-----RFLGSAGAASAMMNPKSTISQVKRLLGRKF 76 (768)
Q Consensus 2 ~viGID~GTt~s~va~~~~g~~~~ii~n~~~~r~~Ps~V~~~~~~-----~~~G~~A~~~~~~~~~~~~~~~k~llg~~~ 76 (768)
.+|-||+|+.++++++.....|-.+ +||+++..... ..+|..+... .+...
T Consensus 5 ~~vViD~Gs~~~k~G~age~~P~~v---------~ps~~~~~~~~~~~~~~~~g~~~~~~---~~~~~------------ 60 (393)
T PF00022_consen 5 KPVVIDNGSSTIKAGFAGEDLPRVV---------IPSVVGRPRDKNSSNDYYVGDEALSP---RSNLE------------ 60 (393)
T ss_dssp SEEEEEECSSEEEEEETTSSS-SEE---------EESEEEEESSSSSSSSCEETHHHHHT---GTGEE------------
T ss_pred CEEEEECCCceEEEEECCCCCCCCc---------CCCccccccccccceeEEeecccccc---hhhee------------
Confidence 5788999999999999655553333 48887765432 4677764321 00000
Q ss_pred CChHHHhhhccCCceeeecCCCCEEEEEEecCceeEecHHHHHHHHHHHHHHHHHhhccCCCCeEEEEeCCCCCHHHHHH
Q 004211 77 REDDVQKDLKLFPFETCESHDGGILIMLEYLGETHKFTPVQILGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDVQRRA 156 (768)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~ 156 (768)
-..|+ .+|. +.--+.+..+++++.... -........++++.|..++...|+.
T Consensus 61 ---------~~~p~-----~~g~-------------i~~~~~~e~i~~~~~~~~-l~~~~~~~~vll~~~~~~~~~~r~~ 112 (393)
T PF00022_consen 61 ---------LRSPI-----ENGV-------------IVDWDALEEIWDYIFSNL-LKVDPSDHPVLLTEPPFNPRSQREK 112 (393)
T ss_dssp ---------EEESE-----ETTE-------------ESSHHHHHHHHHHHHHTT-T-SSGGGSEEEEEESTT--HHHHHH
T ss_pred ---------eeeec-----cccc-------------cccccccccccccccccc-cccccccceeeeeccccCCchhhhh
Confidence 00111 1221 222234455566655432 1112234579999999999999988
Q ss_pred HHHHH-HHcCCCceeeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCCchhhH
Q 004211 157 YLDAA-TIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDF 235 (768)
Q Consensus 157 l~~Aa-~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~ 235 (768)
+.+.+ +..|++.+.+++++.+|+++++. .+-||+|+|++.|.++.|. +|.. +........+||+++
T Consensus 113 l~e~lfE~~~~~~v~~~~~~~~a~~~~g~----------~tglVVD~G~~~t~v~pV~--dG~~-~~~~~~~~~~GG~~l 179 (393)
T PF00022_consen 113 LAEILFEKFGVPSVYFIPSPLLALYASGR----------TTGLVVDIGYSSTSVVPVV--DGYV-LPHSIKRSPIGGDDL 179 (393)
T ss_dssp HHHHHHHTS--SEEEEEEHHHHHHHHTTB----------SSEEEEEESSS-EEEEEEE--TTEE--GGGBEEES-SHHHH
T ss_pred hhhhhhcccccceeeeeeccccccccccc----------ccccccccceeeeeeeeee--eccc-cccccccccccHHHH
Confidence 77765 57799999999999999987764 2569999999999988764 4432 222222457999999
Q ss_pred HHHHHHHHHHH-Hhh--hcccCcc----CChHHHHHHHHHHHHHhhhc---CCC------------CeeeEEEeccccCc
Q 004211 236 DEVLSSYFAAQ-FKQ--QYDIDVY----TNVKASIRLRASCEKLKKVL---SAN------------AEAPLNIECLMNEK 293 (768)
Q Consensus 236 d~~l~~~l~~~-~~~--~~~~~~~----~~~~~~~rL~~~ae~~K~~L---s~~------------~~~~~~i~~l~~~~ 293 (768)
+..|.+.+..+ +.- .+..... ...-....-...++.+|+.+ +.+ ....+.++ ++.
T Consensus 180 t~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~lP---dg~ 256 (393)
T PF00022_consen 180 TEYLKELLKERNIQINPSYLIKSKSPVEGESYNNSDDEEIVEEIKEECCYVSEDPDEEQEEQASENPEKSYELP---DGQ 256 (393)
T ss_dssp HHHHHHHHHHT-SS--GCCCCCCHCCC-TCHHSSHHHHHHHHHHHHHHHSGGSSHHHHHHHHHCSTTTEEEE-T---TSS
T ss_pred HHHHHHHHHhhccccccccccccccccccccccchhhhccchhccchhhhcccccccccccccccccceecccc---ccc
Confidence 99999988873 110 0000000 00000011122333344333 111 11122222 332
Q ss_pred ceEEEecHHHHHHHHHHHHH----------------HHHHHHHHHHHhCCCCCCC--cCEEEEecCCCChHHHHHHHHhh
Q 004211 294 DVKGFIRREEFEKLSSSLLE----------------RMRIPCQKALAGSGLNVEK--IHSVELVGSGSRIPAISRMLNSL 355 (768)
Q Consensus 294 d~~~~itr~~fe~~~~~~~~----------------~i~~~i~~~l~~~~~~~~~--i~~V~LvGG~srip~v~~~l~~~ 355 (768)
.+.+..+.| .+.+.+++ .+.+.|.+++......... ...|+|+||+|++|.+.++|.+.
T Consensus 257 --~i~~~~er~-~~~E~LF~p~~~~~~~~~~~~~~~gL~~~I~~si~~~~~d~r~~l~~nIvl~GG~S~i~G~~eRL~~e 333 (393)
T PF00022_consen 257 --TIILGKERF-RIPEILFNPSLIGIDSASEPSEFMGLPELILDSISKCPIDLRKELLSNIVLTGGSSLIPGFKERLQQE 333 (393)
T ss_dssp --EEEESTHHH-HHHHTTTSGGGGTSSSTS---SSSCHHHHHHHHHHTSTTTTHHHHHTTEEEESGGGGSTTHHHHHHHH
T ss_pred --ccccccccc-cccccccccccccccccccccccchhhhhhhhhhhccccccccccccceEEecccccccchHHHHHHH
Confidence 556666555 33444433 4667788888776432211 47899999999999999999877
Q ss_pred cCC--------CCCCcC-CchhHHHhhHHHHhhHh
Q 004211 356 FNR--------EPGRTI-NASECVARGCALQCAML 381 (768)
Q Consensus 356 fg~--------~v~~~~-n~~eava~GAa~~a~~l 381 (768)
+.. ++.... ++..++=+||+++|..-
T Consensus 334 L~~~~~~~~~~~v~~~~~~~~~~aW~Ggsilasl~ 368 (393)
T PF00022_consen 334 LRSLLPSSTKVKVIAPPSDRQFAAWIGGSILASLS 368 (393)
T ss_dssp HHHHSGTTSTEEEE--T-TTTSHHHHHHHHHHTSG
T ss_pred hhhhhhccccceeccCchhhhhcccccceeeeccc
Confidence 731 223334 78889999999998744
No 40
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=99.30 E-value=1.2e-10 Score=124.55 Aligned_cols=208 Identities=14% Similarity=0.162 Sum_probs=130.4
Q ss_pred CCCeEEEEeCCCCCHHHHHHHHHHHHHc---------CCCceeeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceE
Q 004211 137 PISNCVIGVPCYLTDVQRRAYLDAATIA---------GLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDT 207 (768)
Q Consensus 137 ~~~~~VitVPa~~~~~qr~~l~~Aa~~A---------Gl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~ 207 (768)
.+..+|+..|..+...+|+.+++...-. -+..+.++.+|.+|.+.|....... ......++|+|+|++||
T Consensus 101 ~~~~lv~GLP~~~~~~~k~~l~~~l~g~~~~~~~~~i~I~~V~V~PQ~~Ga~~~~~~~~~~~-~~~~~~~lVIDIG~~Tt 179 (320)
T TIGR03739 101 EIDQLVVGLPVATLTTYKSALEKAVTGEHDIGAGKAVTVRKVLAVPQPQGALVHFVAQHGKL-LTGKEQSLIIDPGYFTF 179 (320)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHhccceecCCceEEEEEEEEEeCCChHHHHHHHhcCCCc-ccCcCcEEEEecCCCee
Confidence 3557999999999988999998886532 2345788999999988876543211 12456789999999999
Q ss_pred EEEEEEeeCCeEEEEEEeCCCCCchhhHHHHHHHHHHHHHhhhcccCccCChHHHHHHHHHHHHHhhhcCCCCeeeEEEe
Q 004211 208 QVCVASYENGHMKILSHAFDESLGGRDFDEVLSSYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANAEAPLNIE 287 (768)
Q Consensus 208 dvsv~~~~~~~~~vl~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~~~i~ 287 (768)
|+.++. ++.+ +...++....|-.++-+.|.+.+.+++ +.+...+...+. .+...-|. +.+
T Consensus 180 D~~~~~--~~~~-~~~~s~s~~~G~~~~~~~I~~~i~~~~----g~~~~~~~~~i~---~~l~~g~~---------~~~- 239 (320)
T TIGR03739 180 DWLVAR--GMRL-VQKRSGSVNGGMSDIYRLLAAEISKDI----GTPAYRDIDRID---LALRTGKQ---------PRI- 239 (320)
T ss_pred eeehcc--CCEE-cccccCCchhHHHHHHHHHHHHHHhhc----CCCCccCHHHHH---HHHHhCCc---------eee-
Confidence 998764 4444 445556778999988888888887664 333111111111 11111110 000
Q ss_pred ccccCcceEEEecHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEecCCCChHHHHHHHHhhcCC-CCCCcCCc
Q 004211 288 CLMNEKDVKGFIRREEFEKLSSSLLERMRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNR-EPGRTINA 366 (768)
Q Consensus 288 ~l~~~~d~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~fg~-~v~~~~n~ 366 (768)
.....| |+ +.-+.....++++...+.+.+. ...+++.|+|+||++. .+++.|++.|+. .+....||
T Consensus 240 -~gk~~d----i~--~~~~~~~~~~~~~v~~i~~~~~----~~~~~~~Iil~GGGa~--ll~~~l~~~f~~~~i~~~~dp 306 (320)
T TIGR03739 240 -YQKPVD----IK--RCLELAETVAQQAVSTMMTWIG----APESIQNIVLVGGGAF--LFKKAVKAAFPKHRIVEVDEP 306 (320)
T ss_pred -cceecC----ch--HHHHHHHHHHHHHHHHHHHhcc----cCCcccEEEEeCCcHH--HHHHHHHHHCCCCeeEecCCc
Confidence 001111 22 1112333333444333333331 1236889999999998 557889999974 44567899
Q ss_pred hhHHHhhHHHHh
Q 004211 367 SECVARGCALQC 378 (768)
Q Consensus 367 ~eava~GAa~~a 378 (768)
..|.|+|-..++
T Consensus 307 ~~ANarG~~~~g 318 (320)
T TIGR03739 307 MFANVRGFQIAG 318 (320)
T ss_pred HHHHHHHHHHhh
Confidence 999999987765
No 41
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=99.28 E-value=5.8e-10 Score=121.39 Aligned_cols=183 Identities=15% Similarity=0.156 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHHHcCCCceeeccchHHHHHHhhhcccCCC-CCCCc-EEEEEEeCCceEEEEEEEeeCCeEEEEEEeCCC
Q 004211 151 DVQRRAYLDAATIAGLKPLRLMHDCTATALGYGIYKTDFS-NVGPT-YVVFVDIGHCDTQVCVASYENGHMKILSHAFDE 228 (768)
Q Consensus 151 ~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~-~~~~~-~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~ 228 (768)
....+.+.++++.||+++..+..+|.|.+-.+.+....+. ..... .++++|+|+++|+++++. +|.+ .. ....
T Consensus 142 ~~~v~~~~~~~~~aGl~~~~id~~~~Al~~~~~~~~~~~~~~~~~~~~~~lvdiG~~~t~l~i~~--~g~~--~~-~r~i 216 (348)
T TIGR01175 142 KEVVDSRLHALKLAGLEPKVVDVESFALLRAWRLLGEQLASRTYRLTDAALVDIGATSSTLNLLH--PGRM--LF-TREV 216 (348)
T ss_pred HHHHHHHHHHHHHcCCceEEEecHHHHHHHHHHHHHhhCccccccCceEEEEEECCCcEEEEEEE--CCeE--EE-EEEe
Confidence 4567788899999999999999999998766531111111 12233 499999999999999986 3433 22 2357
Q ss_pred CCchhhHHHHHHHHHHHHHhhhcccCccCChHHHHHHHHHHHHHhhhcCCCCeeeEEEeccccCcceEEEecHHHHHHHH
Q 004211 229 SLGGRDFDEVLSSYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANAEAPLNIECLMNEKDVKGFIRREEFEKLS 308 (768)
Q Consensus 229 ~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~~~i~~l~~~~d~~~~itr~~fe~~~ 308 (768)
.+||.+|++.|.+.+ +++. ..||+.|........ . -.+++
T Consensus 217 ~~G~~~i~~~i~~~~--------~~~~-----------~~Ae~~k~~~~~~~~-------------~--------~~~~~ 256 (348)
T TIGR01175 217 PFGTRQLTSELSRAY--------GLNP-----------EEAGEAKQQGGLPLL-------------Y--------DPEVL 256 (348)
T ss_pred echHHHHHHHHHHHc--------CCCH-----------HHHHHHHhcCCCCCc-------------h--------hHHHH
Confidence 899999999887433 2221 678888765321110 0 02345
Q ss_pred HHHHHHHHHHHHHHHHhC--CCCCCCcCEEEEecCCCChHHHHHHHHhhcCCCCCC-------------------cCCch
Q 004211 309 SSLLERMRIPCQKALAGS--GLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPGR-------------------TINAS 367 (768)
Q Consensus 309 ~~~~~~i~~~i~~~l~~~--~~~~~~i~~V~LvGG~srip~v~~~l~~~fg~~v~~-------------------~~n~~ 367 (768)
++.++++...|.+.++-. ......++.|+|+||+++++.+.+.+++.||.++.. ..+|.
T Consensus 257 ~~~~~~l~~eI~~~l~~~~~~~~~~~i~~I~LtGgga~~~gl~~~l~~~l~~~v~~~~P~~~~~~~~~~~~~~~~~~~~~ 336 (348)
T TIGR01175 257 RRFKGELVDEIRRSLQFFTAQSGTNSLDGLVLAGGGATLSGLDAAIYQRLGLPTEVANPFALMALDAKVDAGRLAVDAPA 336 (348)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCCcccceEEEECccccchhHHHHHHHHHCCCeEecChHHhcccCccCCHHHHHhhhHH
Confidence 566666666666666432 122335899999999999999999999999854411 12346
Q ss_pred hHHHhhHHHHh
Q 004211 368 ECVARGCALQC 378 (768)
Q Consensus 368 eava~GAa~~a 378 (768)
.++|.|+|+++
T Consensus 337 ~~~a~Glalr~ 347 (348)
T TIGR01175 337 LMTALGLALRG 347 (348)
T ss_pred HHHHhhHhhcC
Confidence 67777777654
No 42
>PTZ00452 actin; Provisional
Probab=99.21 E-value=6.3e-10 Score=121.46 Aligned_cols=218 Identities=16% Similarity=0.147 Sum_probs=135.0
Q ss_pred CCCeEEEEeCCCCCHHHHHHHHHHH-HHcCCCceeeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEee
Q 004211 137 PISNCVIGVPCYLTDVQRRAYLDAA-TIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYE 215 (768)
Q Consensus 137 ~~~~~VitVPa~~~~~qr~~l~~Aa-~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~ 215 (768)
.-..+++|-|+..+..+|+.+.+.+ +..+.+.+.+.+.+.+++++++. .+-||+|+|.|.|.++-+.
T Consensus 99 ~~~pvlitE~~~~~~~~Re~l~eilFE~~~vp~~~~~~~~~lslya~g~----------~tglVVDiG~~~t~v~PV~-- 166 (375)
T PTZ00452 99 EDQPVFMTDAPMNSKFNRERMTQIMFETFNTPCLYISNEAVLSLYTSGK----------TIGLVVDSGEGVTHCVPVF-- 166 (375)
T ss_pred ccCceeeecCCCCCHHHHHHHHHHHhhccCCceEEEechHHHHHHHCCC----------ceeeeecCCCCcceEEEEE--
Confidence 3467899999999999999887764 66788888999999998876542 4679999999999987764
Q ss_pred CCeEEEEEEeCCCCCchhhHHHHHHHHHHHHHhhhcccCccCChHHHHHHHHHHHHHhhhcCCCCe------------ee
Q 004211 216 NGHMKILSHAFDESLGGRDFDEVLSSYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANAE------------AP 283 (768)
Q Consensus 216 ~~~~~vl~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~------------~~ 283 (768)
+|.. +.......++||.+++..|.+.|... +...... .. ...++.+|+.++.-.. ..
T Consensus 167 dG~~-l~~~~~r~~~gG~~lt~~L~~lL~~~-----~~~~~~~-~~----~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~ 235 (375)
T PTZ00452 167 EGHQ-IPQAITKINLAGRLCTDYLTQILQEL-----GYSLTEP-HQ----RIIVKNIKERLCYTALDPQDEKRIYKESNS 235 (375)
T ss_pred CCEE-eccceEEeeccchHHHHHHHHHHHhc-----CCCCCCH-HH----HHHHHHHHHHhccccCcHHHHHHHhhccCC
Confidence 4433 22222346799999999999887532 1111110 00 1234445555432110 00
Q ss_pred EEEe-ccccCcceEEEecHHHH---HHHHHHHH-----HHHHHHHHHHHHhCCC--CCCCcCEEEEecCCCChHHHHHHH
Q 004211 284 LNIE-CLMNEKDVKGFIRREEF---EKLSSSLL-----ERMRIPCQKALAGSGL--NVEKIHSVELVGSGSRIPAISRML 352 (768)
Q Consensus 284 ~~i~-~l~~~~d~~~~itr~~f---e~~~~~~~-----~~i~~~i~~~l~~~~~--~~~~i~~V~LvGG~srip~v~~~l 352 (768)
.... .|-++. .+.+..+.| |-+++|-+ ..+.+.+.+++..+.. ...-...|+|+||+|.+|.+.++|
T Consensus 236 ~~~~y~LPDg~--~i~l~~er~~~~E~LF~P~~~g~~~~gi~~~i~~si~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL 313 (375)
T PTZ00452 236 QDSPYKLPDGN--ILTIKSQKFRCSEILFQPKLIGLEVAGIHHLAYSSIKKCDLDLRQELCRNIVLSGGTTLFPGIANRL 313 (375)
T ss_pred cCceEECCCCC--EEEeehHHhcCcccccChhhcCCCCCChhHHHHHHHHhCCHhHHHHhhccEEEecccccccCHHHHH
Confidence 0001 111232 345666666 22233322 2355666666666532 222246899999999999999999
Q ss_pred HhhcC----C--C--CCCcCCchhHHHhhHHHHhh
Q 004211 353 NSLFN----R--E--PGRTINASECVARGCALQCA 379 (768)
Q Consensus 353 ~~~fg----~--~--v~~~~n~~eava~GAa~~a~ 379 (768)
+..+. . + +..+.+...++=+|++++|.
T Consensus 314 ~~El~~~~p~~~~v~v~~~~~r~~~aW~GgSilas 348 (375)
T PTZ00452 314 SNELTNLVPSQLKIQVAAPPDRRFSAWIGGSIQCT 348 (375)
T ss_pred HHHHHHhCCCCceeEEecCCCcceeEEECchhhcC
Confidence 87773 1 1 22334555677788888875
No 43
>PTZ00004 actin-2; Provisional
Probab=99.17 E-value=1.2e-09 Score=119.76 Aligned_cols=217 Identities=11% Similarity=0.082 Sum_probs=135.7
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHH-HHHcCCCceeeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEeeC
Q 004211 138 ISNCVIGVPCYLTDVQRRAYLDA-ATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYEN 216 (768)
Q Consensus 138 ~~~~VitVPa~~~~~qr~~l~~A-a~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~ 216 (768)
...+++|-|..++..+|+.+.+. .+..|++.+.+..++.+++++++. .+-+|+|+|++.|+++.+. +
T Consensus 101 ~~pvllte~~~~~~~~r~~~~e~lFE~~~~~~~~~~~~~~ls~ya~g~----------~tglVVDiG~~~t~v~pV~--d 168 (378)
T PTZ00004 101 EHPVLLTEAPLNPKANREKMTQIMFETHNVPAMYVAIQAVLSLYASGR----------TTGIVLDSGDGVSHTVPIY--E 168 (378)
T ss_pred cCcceeecCCCCcHHHHHHHHHHHHhhcCCceEEeeccHHHHHHhcCC----------ceEEEEECCCCcEEEEEEE--C
Confidence 45688999999999999877666 467899999999999999876642 4679999999999987764 3
Q ss_pred CeEEEEEEeCCCCCchhhHHHHHHHHHHHHHhhhcccCccCChHHHHHHHHHHHHHhhhcCCCC------------e-ee
Q 004211 217 GHMKILSHAFDESLGGRDFDEVLSSYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANA------------E-AP 283 (768)
Q Consensus 217 ~~~~vl~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~------------~-~~ 283 (768)
|.. +.......++||++++..|.+.+... +..+.. .. -...++.+|+.+..-. . ..
T Consensus 169 G~~-l~~~~~~~~~GG~~lt~~L~~lL~~~-----~~~~~~--~~---~~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~ 237 (378)
T PTZ00004 169 GYS-LPHAIHRLDVAGRDLTEYMMKILHER-----GTTFTT--TA---EKEIVRDIKEKLCYIALDFDEEMGNSAGSSDK 237 (378)
T ss_pred CEE-eecceeeecccHHHHHHHHHHHHHhc-----CCCCCc--HH---HHHHHHHHhhcceeecCCHHHHHhhhhcCccc
Confidence 433 22333356799999999999988542 111111 11 1123455555542110 0 00
Q ss_pred EEEec-cccCcceEEEecHHHHH---HHHHHH------HHHHHHHHHHHHHhCCCC--CCCcCEEEEecCCCChHHHHHH
Q 004211 284 LNIEC-LMNEKDVKGFIRREEFE---KLSSSL------LERMRIPCQKALAGSGLN--VEKIHSVELVGSGSRIPAISRM 351 (768)
Q Consensus 284 ~~i~~-l~~~~d~~~~itr~~fe---~~~~~~------~~~i~~~i~~~l~~~~~~--~~~i~~V~LvGG~srip~v~~~ 351 (768)
..... |-++. .+.+..+.|. -++.|- ...+.+.|.+++.++... ..-...|+|+||+|.+|.+.++
T Consensus 238 ~~~~y~lPdg~--~i~l~~er~~~~E~LF~P~~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~R 315 (378)
T PTZ00004 238 YEESYELPDGT--IITVGSERFRCPEALFQPSLIGKEEPPGIHELTFQSINKCDIDIRKDLYGNIVLSGGTTMYRGLPER 315 (378)
T ss_pred cceEEECCCCC--EEEEcHHHeeCcccccChhhcCccccCChHHHHHHHHHhCChhHHHHHHhhEEeccchhcCcCHHHH
Confidence 01111 11232 3455555542 334442 224556677777665321 1123689999999999999999
Q ss_pred HHhhcC----C----CCCCcCCchhHHHhhHHHHhh
Q 004211 352 LNSLFN----R----EPGRTINASECVARGCALQCA 379 (768)
Q Consensus 352 l~~~fg----~----~v~~~~n~~eava~GAa~~a~ 379 (768)
|...+. . .+..+.++..++=+||+++|.
T Consensus 316 L~~EL~~~~p~~~~~~v~~~~~~~~~aW~Ggsilas 351 (378)
T PTZ00004 316 LTKELTTLAPSTMKIKVVAPPERKYSVWIGGSILSS 351 (378)
T ss_pred HHHHHHHhCCCCccEEEecCCCCceeEEECcccccC
Confidence 987773 1 123344566777788888775
No 44
>PTZ00281 actin; Provisional
Probab=99.16 E-value=6.4e-10 Score=121.73 Aligned_cols=218 Identities=15% Similarity=0.147 Sum_probs=136.6
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHH-HHHcCCCceeeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEeeC
Q 004211 138 ISNCVIGVPCYLTDVQRRAYLDA-ATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYEN 216 (768)
Q Consensus 138 ~~~~VitVPa~~~~~qr~~l~~A-a~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~ 216 (768)
-..+++|-|..+...+|+.+.+. .+..+++-+.+...+.+++++++. .+-+|+|+|.+.|.++-+. +
T Consensus 101 ~~pvllte~~~~~~~~re~l~e~lFE~~~vp~~~~~~~~~ls~ya~g~----------~tglVVDiG~~~t~v~PV~--d 168 (376)
T PTZ00281 101 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR----------TTGIVMDSGDGVSHTVPIY--E 168 (376)
T ss_pred cCeEEEecCCCCcHHHHHHHHHHHhcccCCceeEeeccHHHHHHhcCC----------ceEEEEECCCceEEEEEEE--e
Confidence 45788999999999999998875 577889989999999999876542 4679999999999987554 2
Q ss_pred CeEEEEEEeCCCCCchhhHHHHHHHHHHHHHhhhcccCccCChHHHHHHHHHHHHHhhhcCCCC---e---------eeE
Q 004211 217 GHMKILSHAFDESLGGRDFDEVLSSYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANA---E---------APL 284 (768)
Q Consensus 217 ~~~~vl~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~---~---------~~~ 284 (768)
|.. +........+||.++++.|.+.+... +..... . .- ...++.+|+.++.-. . ...
T Consensus 169 G~~-~~~~~~~~~~GG~~lt~~L~~lL~~~-----~~~~~~-~-~~---~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~ 237 (376)
T PTZ00281 169 GYA-LPHAILRLDLAGRDLTDYMMKILTER-----GYSFTT-T-AE---REIVRDIKEKLAYVALDFEAEMQTAASSSAL 237 (376)
T ss_pred ccc-chhheeeccCcHHHHHHHHHHHHHhc-----CCCCCc-H-HH---HHHHHHHHHhcEEecCCchHHHHhhhcCccc
Confidence 322 22333356799999999999887542 111111 0 00 134556666653111 0 001
Q ss_pred EEe-ccccCcceEEEecHHHH---HHHHHHHH-----HHHHHHHHHHHHhCCCC--CCCcCEEEEecCCCChHHHHHHHH
Q 004211 285 NIE-CLMNEKDVKGFIRREEF---EKLSSSLL-----ERMRIPCQKALAGSGLN--VEKIHSVELVGSGSRIPAISRMLN 353 (768)
Q Consensus 285 ~i~-~l~~~~d~~~~itr~~f---e~~~~~~~-----~~i~~~i~~~l~~~~~~--~~~i~~V~LvGG~srip~v~~~l~ 353 (768)
... .|-++. .+.+..+.| |-+++|-+ ..+.+.|.+++..+... ..-.+.|+|+||+|.+|.+.++|+
T Consensus 238 ~~~y~LPdg~--~i~i~~er~~~~E~LF~P~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~ 315 (376)
T PTZ00281 238 EKSYELPDGQ--VITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMN 315 (376)
T ss_pred ceeEECCCCC--EEEeeHHHeeCcccccChhhcCCCCCCHHHHHHHHHHhCChhHHHHHHhhccccCccccCcCHHHHHH
Confidence 111 111222 345555544 23333321 13556666666665321 112368999999999999999988
Q ss_pred hhcC----C----CCCCcCCchhHHHhhHHHHhhH
Q 004211 354 SLFN----R----EPGRTINASECVARGCALQCAM 380 (768)
Q Consensus 354 ~~fg----~----~v~~~~n~~eava~GAa~~a~~ 380 (768)
..+. . ++..+.++..++=+||+++|..
T Consensus 316 ~El~~~~p~~~~v~v~~~~~r~~~aW~Ggsilasl 350 (376)
T PTZ00281 316 KELTALAPSTMKIKIIAPPERKYSVWIGGSILASL 350 (376)
T ss_pred HHHHHhCCCCcceEEecCCCCceeEEECcccccCc
Confidence 7773 1 1233446677888899888863
No 45
>PTZ00466 actin-like protein; Provisional
Probab=99.08 E-value=5.9e-09 Score=113.97 Aligned_cols=217 Identities=10% Similarity=0.066 Sum_probs=134.9
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHH-HHHcCCCceeeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEeeC
Q 004211 138 ISNCVIGVPCYLTDVQRRAYLDA-ATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYEN 216 (768)
Q Consensus 138 ~~~~VitVPa~~~~~qr~~l~~A-a~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~ 216 (768)
-..+++|-|+.++..+|+.+.+. .+..|++.+.+.+.+.+++++++. .+-+|+|+|.+.|.++-+. +
T Consensus 106 ~~pvllte~~~~~~~~re~~~e~lFE~~~~p~~~~~~~~~lsl~a~g~----------~tglVVD~G~~~t~v~PV~--~ 173 (380)
T PTZ00466 106 EHPVLLTEAPLNPQKNKEKIAEVFFETFNVPALFISIQAILSLYSCGK----------TNGTVLDCGDGVCHCVSIY--E 173 (380)
T ss_pred cCeEEEecCccccHHHHHHHHHHHhccCCCCeEEEecchHHHHHhcCC----------ceEEEEeCCCCceEEEEEE--C
Confidence 45688999999999999987665 466788888999999999877642 4689999999999987664 3
Q ss_pred CeEEEEEEeCCCCCchhhHHHHHHHHHHHHHhhhcccCccCChHHHHHHHHHHHHHhhhcCCCC-----------eeeEE
Q 004211 217 GHMKILSHAFDESLGGRDFDEVLSSYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANA-----------EAPLN 285 (768)
Q Consensus 217 ~~~~vl~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~-----------~~~~~ 285 (768)
|.. +.......++||++++..|.+.+... .+..+.. .-+..++.+|+.++.-. .....
T Consensus 174 G~~-~~~~~~~~~~GG~~lt~~L~~lL~~~---~~~~~~~-------~~~~~v~~iKe~~c~v~~d~~~e~~~~~~~~~~ 242 (380)
T PTZ00466 174 GYS-ITNTITRTDVAGRDITTYLGYLLRKN---GHLFNTS-------AEMEVVKNMKENCCYVSFNMNKEKNSSEKALTT 242 (380)
T ss_pred CEE-eecceeEecCchhHHHHHHHHHHHhc---CCCCCcH-------HHHHHHHHHHHhCeEecCChHHHHhhccccccc
Confidence 433 22233346899999999999887532 1111110 11233455565543110 00000
Q ss_pred Eec-cccCcceEEEecHHHH---HHHHHHHH-----HHHHHHHHHHHHhCCCC--CCCcCEEEEecCCCChHHHHHHHHh
Q 004211 286 IEC-LMNEKDVKGFIRREEF---EKLSSSLL-----ERMRIPCQKALAGSGLN--VEKIHSVELVGSGSRIPAISRMLNS 354 (768)
Q Consensus 286 i~~-l~~~~d~~~~itr~~f---e~~~~~~~-----~~i~~~i~~~l~~~~~~--~~~i~~V~LvGG~srip~v~~~l~~ 354 (768)
... |-++. .+.+..+.| |-+++|-+ ..+.+.|.+.+.++... ..-...|+|+||+|.+|.+.++|+.
T Consensus 243 ~~y~LPdg~--~i~l~~er~~~~E~LF~P~~~g~~~~gl~~~i~~sI~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~ 320 (380)
T PTZ00466 243 LPYILPDGS--QILIGSERYRAPEVLFNPSILGLEYLGLSELIVTSITRADMDLRRTLYSHIVLSGGTTMFHGFGDRLLN 320 (380)
T ss_pred eeEECCCCc--EEEEchHHhcCcccccCccccCCCCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCccccCCHHHHHHH
Confidence 111 11222 345666665 23333321 13456666666665322 1124789999999999999999988
Q ss_pred hcC----C----CCCCcCCchhHHHhhHHHHhh
Q 004211 355 LFN----R----EPGRTINASECVARGCALQCA 379 (768)
Q Consensus 355 ~fg----~----~v~~~~n~~eava~GAa~~a~ 379 (768)
.+. . .+....++..++=+||+++|.
T Consensus 321 EL~~l~p~~~~v~v~~~~~r~~~aW~GgSilas 353 (380)
T PTZ00466 321 EIRKFAPKDITIRISAPPERKFSTFIGGSILAS 353 (380)
T ss_pred HHHHhCCCCceEEEecCCCCceeEEECchhhcC
Confidence 773 1 123334556677788888875
No 46
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.04 E-value=1.2e-07 Score=96.38 Aligned_cols=160 Identities=18% Similarity=0.289 Sum_probs=109.3
Q ss_pred HHHHHHHHHHcCCCceeeccchHHHHHHhhhcccCC-CCCCCcEEEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCCch
Q 004211 154 RRAYLDAATIAGLKPLRLMHDCTATALGYGIYKTDF-SNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGG 232 (768)
Q Consensus 154 r~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~-~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG 232 (768)
-....+|++.|||....+--|..|.--+|..--..+ +......++|+|+|+..+.++++.-+ +.+.+. +..+||
T Consensus 151 v~~ri~a~~~AGl~~~vlDV~~fAl~ra~~~~~~~~~~~~a~~~vav~~Igat~s~l~vi~~g----k~ly~r-~~~~g~ 225 (354)
T COG4972 151 VESRIDAFELAGLEPKVLDVESFALLRAYRLLASQFGPEEAAMKVAVFDIGATSSELLVIQDG----KILYTR-EVPVGT 225 (354)
T ss_pred hHHHHHHHHHcCCCceEEehHHHHHHHHHHHHHHHhCCchhhhhheeeeecccceEEEEEECC----eeeeEe-eccCcH
Confidence 455678999999999888888888776665322221 22333447999999999999998754 344454 789999
Q ss_pred hhHHHHHHHHHHHHHhhhcccCccCChHHHHHHHHHHHHHhhhcCCCCeeeEEEeccccCcceEEEecHHHHHHHHHHHH
Q 004211 233 RDFDEVLSSYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANAEAPLNIECLMNEKDVKGFIRREEFEKLSSSLL 312 (768)
Q Consensus 233 ~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~~~i~~l~~~~d~~~~itr~~fe~~~~~~~ 312 (768)
+.+++.+.+.+ +.+. ..++.+|....-.. ++ -.++..+++
T Consensus 226 ~Qlt~~i~r~~--------~L~~-----------~~a~~~k~~~~~P~-------------~y--------~~~vl~~f~ 265 (354)
T COG4972 226 DQLTQEIQRAY--------SLTE-----------EKAEEIKRGGTLPT-------------DY--------GSEVLRPFL 265 (354)
T ss_pred HHHHHHHHHHh--------CCCh-----------hHhHHHHhCCCCCC-------------ch--------hHHHHHHHH
Confidence 99999987544 2322 55666665543222 11 123445555
Q ss_pred HHHHHHHHHHHH----hCCCCCCCcCEEEEecCCCChHHHHHHHHhhcCCCC
Q 004211 313 ERMRIPCQKALA----GSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNREP 360 (768)
Q Consensus 313 ~~i~~~i~~~l~----~~~~~~~~i~~V~LvGG~srip~v~~~l~~~fg~~v 360 (768)
+.+...|.+.|+ .++ ..+|+.++|.||++++-.+.+++.+.++.++
T Consensus 266 ~~l~~ei~Rslqfy~~~s~--~~~id~i~LaGggA~l~gL~~~i~qrl~~~t 315 (354)
T COG4972 266 GELTQEIRRSLQFYLSQSE--MVDIDQILLAGGGASLEGLAAAIQQRLSIPT 315 (354)
T ss_pred HHHHHHHHHHHHHHHhccc--cceeeEEEEecCCcchhhHHHHHHHHhCCCe
Confidence 555555555544 444 3479999999999999999999999998543
No 47
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=99.03 E-value=1e-08 Score=105.59 Aligned_cols=170 Identities=16% Similarity=0.192 Sum_probs=110.3
Q ss_pred eeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCCchhhHHHHHHHHHHHHHhh
Q 004211 170 RLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEVLSSYFAAQFKQ 249 (768)
Q Consensus 170 ~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~d~~l~~~l~~~~~~ 249 (768)
..++|.+|.+.+..... |..-.|+|+||..+-+..+. +|.+.-......+..|+..|.+.+++.+-
T Consensus 73 ~~~~ei~~~~~g~~~~~-------~~~~~vidiGgqd~k~i~~~--~g~~~~~~~n~~ca~Gtg~f~e~~a~~l~----- 138 (248)
T TIGR00241 73 KIVTEISCHGKGANYLA-------PEARGVIDIGGQDSKVIKID--DGKVDDFTMNDKCAAGTGRFLEVTARRLG----- 138 (248)
T ss_pred CceEEhhHHHHHHHHHC-------CCCCEEEEecCCeeEEEEEC--CCcEeeeeecCcccccccHHHHHHHHHcC-----
Confidence 46788888776544332 22335999999999888877 56554444566788899999988886652
Q ss_pred hcccCccCChHHHHHHHHHHHHHhhh----cCCCCeeeEEEec-cccCcceEEEecHHHHHHHHHHHHHHHHHHHHHHHH
Q 004211 250 QYDIDVYTNVKASIRLRASCEKLKKV----LSANAEAPLNIEC-LMNEKDVKGFIRREEFEKLSSSLLERMRIPCQKALA 324 (768)
Q Consensus 250 ~~~~~~~~~~~~~~rL~~~ae~~K~~----Ls~~~~~~~~i~~-l~~~~d~~~~itr~~fe~~~~~~~~~i~~~i~~~l~ 324 (768)
+++ ++++.++.. ..-+....+..+. +.... ....++ ++++..+++.+...+.+.+.
T Consensus 139 ---~~~-----------~e~~~~~~~~~~~~~~~~~c~vf~~s~vi~~l--~~g~~~---~di~~~~~~~va~~i~~~~~ 199 (248)
T TIGR00241 139 ---VSV-----------EELGSLAEKADRKAKISSMCTVFAESELISLL--AAGVKK---EDILAGVYESIAERVAEMLQ 199 (248)
T ss_pred ---CCH-----------HHHHHHHhcCCCCCCcCCEeEEEechhHHHHH--HCCCCH---HHHHHHHHHHHHHHHHHHHh
Confidence 222 233333222 1111222222221 00000 001223 45666777777777766665
Q ss_pred hCCCCCCCcC-EEEEecCCCChHHHHHHHHhhcCCCCCCcCCchhHHHhhHHHH
Q 004211 325 GSGLNVEKIH-SVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQ 377 (768)
Q Consensus 325 ~~~~~~~~i~-~V~LvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~GAa~~ 377 (768)
..+ ++ .|+|+||.+++|.+.+.+.+.++.++..+.++..+.|+|||++
T Consensus 200 ~~~-----~~~~Vvl~GGva~n~~l~~~l~~~lg~~v~~~~~~~~~~AlGaAl~ 248 (248)
T TIGR00241 200 RLK-----IEAPIVFTGGVSKNKGLVKALEKKLGMKVITPPEPQIVGAVGAALL 248 (248)
T ss_pred hcC-----CCCCEEEECccccCHHHHHHHHHHhCCcEEcCCCccHHHHHHHHhC
Confidence 543 44 6999999999999999999999999999999999999999973
No 48
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=99.00 E-value=3.8e-09 Score=112.77 Aligned_cols=172 Identities=15% Similarity=0.194 Sum_probs=98.7
Q ss_pred CceeeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCCchhhHHHHHHHHHHHH
Q 004211 167 KPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEVLSSYFAAQ 246 (768)
Q Consensus 167 ~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~d~~l~~~l~~~ 246 (768)
..+.+++|+.||.+.+.... .+...+||+|+||+|+|++++.- +.-.+-.+.+...+|-..+-..+.+.+...
T Consensus 141 ~~V~V~PQ~~~A~~~~~~~~-----~~~~~~lVVDIGG~T~Dv~~v~~--~~~~~~~~~~~~~~Gvs~~~~~I~~~l~~~ 213 (318)
T PF06406_consen 141 KDVEVFPQSVGAVFDALMDL-----DEDESVLVVDIGGRTTDVAVVRG--GLPDISKCSGTPEIGVSDLYDAIAQALRSA 213 (318)
T ss_dssp EEEEEEESSHHHHHHHHHTS------TTSEEEEEEE-SS-EEEEEEEG--GG--EEEEEEETTSSTHHHHHHHHHHTT--
T ss_pred eeEEEEcccHHHHHHHHHhh-----cccCcEEEEEcCCCeEEeeeecC--CccccchhccCCchhHHHHHHHHHHHHHHh
Confidence 35778999999998876542 23467999999999999999862 211233344456899988888888776541
Q ss_pred HhhhcccCccCChHHHHHHHHHHHHH-hhhcCCCCeeeEEEeccccCcceEEEecHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004211 247 FKQQYDIDVYTNVKASIRLRASCEKL-KKVLSANAEAPLNIECLMNEKDVKGFIRREEFEKLSSSLLERMRIPCQKALAG 325 (768)
Q Consensus 247 ~~~~~~~~~~~~~~~~~rL~~~ae~~-K~~Ls~~~~~~~~i~~l~~~~d~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~ 325 (768)
+...+. ..++++ +... .... +.....+.+ ..+++.++++..++++...|.+.+..
T Consensus 214 -----~~~~s~---------~~~~~ii~~~~---~~~~--~~~~i~~~~-----~~~~v~~~i~~~~~~l~~~i~~~~~~ 269 (318)
T PF06406_consen 214 -----GIDTSE---------LQIDDIIRNRK---DKGY--LRQVINDED-----VIDDVSEVIEEAVEELINRILRELGD 269 (318)
T ss_dssp -----SBHHHH---------HHHHHHHHTTT----HHH--HHHHSSSHH-----HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred -----cCCCcH---------HHHHHHHHhhh---ccce--ecccccchh-----hHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 111110 111111 1000 0000 000001111 13445555555666666555555543
Q ss_pred CCCCCCCcCEEEEecCCCChHHHHHHHHhhcC---CCCCCcCCchhHHHhhHH
Q 004211 326 SGLNVEKIHSVELVGSGSRIPAISRMLNSLFN---REPGRTINASECVARGCA 375 (768)
Q Consensus 326 ~~~~~~~i~~V~LvGG~srip~v~~~l~~~fg---~~v~~~~n~~eava~GAa 375 (768)
..+++.|+|+||++. .+.+.|++.|+ ..+...-||+.|.|+|-+
T Consensus 270 ----~~~~~~I~~vGGGA~--ll~~~Ik~~~~~~~~~i~i~~~pqfAnv~G~~ 316 (318)
T PF06406_consen 270 ----FSDIDRIFFVGGGAI--LLKDAIKEAFPVPNERIVIVDDPQFANVRGFY 316 (318)
T ss_dssp ----S-S-SEEEEESTTHH--HHHHHHHHHHT--GGGEE--SSGGGHHHHHHH
T ss_pred ----hccCCeEEEECCcHH--HHHHHHHHhhCCCCCcEEECCCchhhHHHHHh
Confidence 346889999999975 46788888886 356778899999999964
No 49
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=98.91 E-value=2.6e-07 Score=94.85 Aligned_cols=181 Identities=13% Similarity=0.108 Sum_probs=102.1
Q ss_pred eeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCCchhhHHHHHHHHHHHHHhh
Q 004211 170 RLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEVLSSYFAAQFKQ 249 (768)
Q Consensus 170 ~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~d~~l~~~l~~~~~~ 249 (768)
..++|.+|.|....+.. .+..-.|+|+||-.+-+..+. .+|.+.-...+.-+.-|.-.|-+.+++.|
T Consensus 106 ~~v~EItaha~Ga~~~~------pp~v~tIIDIGGQDsK~I~~d-~~G~v~dF~MNdkCAAGTGrFLE~~A~~L------ 172 (293)
T TIGR03192 106 KAITEIACHARGANYMG------GNAVRTILDMGGQDCKAIHCD-EKGKVTNFLMNDKCAAGTGRGMEVISDLM------ 172 (293)
T ss_pred cceeeHHHHHHHHHHhc------CCCCCEEEEeCCCceEEEEEc-CCCcEeeeeecCcccccccHHHHHHHHHc------
Confidence 45899999887654322 124458999999866654441 34555444555455666555555555444
Q ss_pred hcccCccCChHHHHHHHHHHHHHh-hhcCCCCeeeEEEeccccCcceEEEecHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 004211 250 QYDIDVYTNVKASIRLRASCEKLK-KVLSANAEAPLNIECLMNEKDVKGFIRREEFEKLSSSLLERMRIPCQKALAGSGL 328 (768)
Q Consensus 250 ~~~~~~~~~~~~~~rL~~~ae~~K-~~Ls~~~~~~~~i~~l~~~~d~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~ 328 (768)
++++. .+..+ +.+.. ....-+....+..++-.-. -..--++++ +++..+...+...+-..+.+.++
T Consensus 173 --gi~le----el~~~---a~~~~~~p~~Iss~CtVFAeSevi~-l~~~G~~~e---dI~aGl~~sia~rv~~~~~~~~i 239 (293)
T TIGR03192 173 --QIPIA----DLGPR---SFDVETEPEAVSSICVVFAKSEALG-LLKAGYTKN---MVIAAYCQAMAERVVSLLERIGV 239 (293)
T ss_pred --CCCHH----HHHHH---HHhcCCCCCCcCCcceEeccHhHHH-HHHCCCCHH---HHHHHHHHHHHHHHHHHhcccCC
Confidence 23221 12211 21221 1111222223332210000 000112333 34444444444444444444333
Q ss_pred CCCCcCEEEEecCCCChHHHHHHHHhhcCCCCC-CcCCchhHHHhhHHHHhhH
Q 004211 329 NVEKIHSVELVGSGSRIPAISRMLNSLFNREPG-RTINASECVARGCALQCAM 380 (768)
Q Consensus 329 ~~~~i~~V~LvGG~srip~v~~~l~~~fg~~v~-~~~n~~eava~GAa~~a~~ 380 (768)
. ..|+|+||.++.|.+.+.+++.+|.++. .+.+|+.+.|+|||++|..
T Consensus 240 ~----~~v~~~GGva~N~~l~~al~~~Lg~~v~~~p~~p~~~GAlGAAL~A~~ 288 (293)
T TIGR03192 240 E----EGFFITGGIAKNPGVVKRIERILGIKAVDTKIDSQIAGALGAALFGYT 288 (293)
T ss_pred C----CCEEEECcccccHHHHHHHHHHhCCCceeCCCCccHHHHHHHHHHHHH
Confidence 2 3489999999999999999999998876 5778999999999999864
No 50
>KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton]
Probab=98.87 E-value=1.5e-07 Score=96.85 Aligned_cols=116 Identities=16% Similarity=0.187 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEEeCCCCCHHHHHHHHHH-HHHcCCCceeeccchHHHHHHhhhcccCCCCCCCc
Q 004211 117 QILGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDVQRRAYLDA-ATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPT 195 (768)
Q Consensus 117 el~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~A-a~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~ 195 (768)
+++.++++|..+..- ..+..-.-++||-|++=+...|+.+.+. .+...++...|..+|+++|++.| ..
T Consensus 86 D~~~~~w~~~~~~~L-k~~p~ehP~litEp~wN~~~~Rek~~ElmFE~~nvPAf~L~k~~v~~AFA~G----------rs 154 (426)
T KOG0679|consen 86 DLFEMQWRYAYKNQL-KVNPEEHPVLITEPPWNTRANREKLTELMFEKLNVPAFYLAKTAVCTAFANG----------RS 154 (426)
T ss_pred HHHHHHHHHHHhhhh-hcCccccceeeecCCCCcHHHHHHHHHHHHhhcCCceEEEechHHHHHHhcC----------CC
Confidence 456667777664321 2233345689999999889999877766 46677788888888888887643 35
Q ss_pred EEEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCCchhhHHHHHHHHHHHH
Q 004211 196 YVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEVLSSYFAAQ 246 (768)
Q Consensus 196 ~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~d~~l~~~l~~~ 246 (768)
+.||+|+|+++|.++-+. +|.+--.++. -..+||+.++..+.+.|..+
T Consensus 155 talVvDiGa~~~svsPV~--DG~Vlqk~vv-ks~laGdFl~~~~~q~l~~~ 202 (426)
T KOG0679|consen 155 TALVVDIGATHTSVSPVH--DGYVLQKGVV-KSPLAGDFLNDQCRQLLEPK 202 (426)
T ss_pred ceEEEEecCCCceeeeee--cceEeeeeeE-ecccchHHHHHHHHHHHhhc
Confidence 789999999999998765 5544334444 57899999999999998875
No 51
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=98.71 E-value=2.3e-06 Score=88.92 Aligned_cols=175 Identities=21% Similarity=0.205 Sum_probs=108.6
Q ss_pred eeeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCCchhhHHHHHHHHHHHHHh
Q 004211 169 LRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEVLSSYFAAQFK 248 (768)
Q Consensus 169 ~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~d~~l~~~l~~~~~ 248 (768)
-..++|.+|-+.+..... +..-.|+|+||--.-+..+ .+|.+.-..-+.-+.-|.-.|-+.+++.|
T Consensus 210 D~~~~Ei~ah~kgA~~f~-------p~~dtIiDIGGQD~K~i~i--~dG~v~df~mN~~CAAGtGrFLE~~A~~L----- 275 (396)
T COG1924 210 DKVVVEISAHAKGARYFA-------PDVDTVIDIGGQDSKVIKL--EDGKVDDFTMNDKCAAGTGRFLEVIARRL----- 275 (396)
T ss_pred CcceeeeehhHHHHHHhC-------CCCcEEEEecCcceeEEEE--eCCeeeeeEeccccccccchHHHHHHHHh-----
Confidence 356677777766544332 1122899999976665554 47876666666556666555555555443
Q ss_pred hhcccCccCChHHHHHHHHHHHHHhhhcCCCCeeeEEEec-----cccCcceEEEecHHHHHHHHHHHHHHHHHHHHH-H
Q 004211 249 QQYDIDVYTNVKASIRLRASCEKLKKVLSANAEAPLNIEC-----LMNEKDVKGFIRREEFEKLSSSLLERMRIPCQK-A 322 (768)
Q Consensus 249 ~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~~~i~~-----l~~~~d~~~~itr~~fe~~~~~~~~~i~~~i~~-~ 322 (768)
+.++.+ |-+.+.+.+..-.-++...+..++ +-.|. ..|+++..+...+...+-. +
T Consensus 276 ---gv~v~E-------~~~~A~~~~~~v~i~S~CaVF~eSevi~~~~~G~---------~~EdI~AGl~~Sv~~~v~~~~ 336 (396)
T COG1924 276 ---GVDVEE-------LGKLALKATPPVKINSRCAVFAESEVISALAEGA---------SPEDILAGLAYSVAENVAEKV 336 (396)
T ss_pred ---CCCHHH-------HHHHHhcCCCCcccCCeeEEEehHHHHHHHHcCC---------CHHHHHHHHHHHHHHHHHHHH
Confidence 233221 223344444322222223332221 11121 1356666666666655544 5
Q ss_pred HHhCCCCCCCcCEEEEecCCCChHHHHHHHHhhcCCCCCCcCCchhHHHhhHHHHhhH
Q 004211 323 LAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQCAM 380 (768)
Q Consensus 323 l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~GAa~~a~~ 380 (768)
++.-.... -|+|+||.+....+.+++++.+|.++..+.+|.-.-|+|||++|..
T Consensus 337 ~~~~~i~~----~iv~~GGva~n~av~~ale~~lg~~V~vP~~~ql~GAiGAAL~a~~ 390 (396)
T COG1924 337 IKRVDIEE----PIVLQGGVALNKAVVRALEDLLGRKVIVPPYAQLMGAIGAALIAKE 390 (396)
T ss_pred hhccCCCC----CEEEECcchhhHHHHHHHHHHhCCeeecCCccchhhHHHHHHHHhh
Confidence 55544332 2999999999999999999999999999999999999999999863
No 52
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=98.68 E-value=1.9e-06 Score=91.92 Aligned_cols=175 Identities=16% Similarity=0.077 Sum_probs=104.0
Q ss_pred eeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCCchhhHHHHHHHHHHHHHhh
Q 004211 170 RLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEVLSSYFAAQFKQ 249 (768)
Q Consensus 170 ~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~d~~l~~~l~~~~~~ 249 (768)
..++|-+|.|....+... ..+..-.|+|+||-..- ++.+.+|.+.-...++-+.-|+-.|=+.+++.|
T Consensus 220 ~iv~EItaha~GA~~L~p----~~~~v~TIIDIGGQDsK--~I~l~~G~v~dF~MNdkCAAGTGrFLE~~A~~L------ 287 (404)
T TIGR03286 220 LIQEELTVNSKGAVYLAD----KQEGPATVIDIGGMDNK--AISVWDGIPDNFTMGGICAGASGRFLEMTAKRL------ 287 (404)
T ss_pred ceEEEEhhHHHHHHHhcc----cCCCCcEEEEeCCCceE--EEEEcCCceeeEEEcCcccccCcHHHHHHHHHh------
Confidence 447888887755433221 22346799999996544 455567766555566566666666666666555
Q ss_pred hcccCccCChHHHHHHHHHHHHHh---hhcCCCCeeeEEEe----ccccCcceEEEecHHHHHHHHHHHHHHHHHHHH-H
Q 004211 250 QYDIDVYTNVKASIRLRASCEKLK---KVLSANAEAPLNIE----CLMNEKDVKGFIRREEFEKLSSSLLERMRIPCQ-K 321 (768)
Q Consensus 250 ~~~~~~~~~~~~~~rL~~~ae~~K---~~Ls~~~~~~~~i~----~l~~~~d~~~~itr~~fe~~~~~~~~~i~~~i~-~ 321 (768)
+.++. .|-..+.+.+ ..+++.. .+.-+ .+.+ .-.++ ++++..+...+...+. .
T Consensus 288 --gi~ie-------El~~lA~~~~~~pv~IsS~C--tVFaeSevIsll~-----~G~~~---eDIaAGl~~SIa~rv~~~ 348 (404)
T TIGR03286 288 --GVDIT-------ELGKLALKGMPEKVRMNSYC--IVFGIQDLVTALA-----EGASP---EDVAAAACHSVAEQVYEQ 348 (404)
T ss_pred --CCCHH-------HHHHHHHhCCCCCCCccCcc--cccccHhHHHHHH-----CCCCH---HHHHHHHHHHHHHHHHHH
Confidence 22221 1212232321 1122221 11111 0101 01233 3444455555544444 3
Q ss_pred HHHhCCCCCCCcCEEEEecCCCChHHHHHHHHhhcCCCCCCcCCchhHHHhhHHHHhh
Q 004211 322 ALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQCA 379 (768)
Q Consensus 322 ~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~GAa~~a~ 379 (768)
+++..++. +.|+++||.++.+.+.+.+++.+|.++..+.+|+.+.|+|||++|.
T Consensus 349 l~~~~~i~----~~VvftGGva~N~gvv~ale~~Lg~~iivPe~pq~~GAiGAAL~A~ 402 (404)
T TIGR03286 349 QLQEIDVR----EPVILVGGTSLIEGLVKALGDLLGIEVVVPEYSQYIGAVGAALLAS 402 (404)
T ss_pred HhhcCCCC----CcEEEECChhhhHHHHHHHHHHhCCcEEECCcccHHHHHHHHHHhc
Confidence 34443322 3499999999999999999999999999999999999999999985
No 53
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=98.66 E-value=1.1e-07 Score=102.48 Aligned_cols=164 Identities=14% Similarity=0.096 Sum_probs=92.3
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHHH--------HcCCCceeeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEE
Q 004211 138 ISNCVIGVPCYLTDVQRRAYLDAAT--------IAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQV 209 (768)
Q Consensus 138 ~~~~VitVPa~~~~~qr~~l~~Aa~--------~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dv 209 (768)
..-.+||.+...-.+-++.+..+.. .||+++-.++. |.|++.+... . ++...++++|+|||||++
T Consensus 88 ~~ahIITg~~~~~~Nl~~~v~~~~~~~gdfVVA~AG~~le~iva-~~ASg~avLs-e-----Eke~gVa~IDIGgGTT~i 160 (475)
T PRK10719 88 SGAVIITGETARKENAREVVMALSGSAGDFVVATAGPDLESIIA-GKGAGAQTLS-E-----ERNTRVLNIDIGGGTANY 160 (475)
T ss_pred ccEEEEEechhHHHHHHHHHHHhcccccceeeeccCccHHHhhh-HHHhhHHHhh-h-----hccCceEEEEeCCCceEE
Confidence 3446777776554444444433221 26777766666 8887765442 1 457789999999999999
Q ss_pred EEEEeeCCeEEEEEEeCCCCCchhhHHHHHHHHHHHHHhhhcccCccCChHHHHHHHHHHHHHhhhcCCCCeeeEEEecc
Q 004211 210 CVASYENGHMKILSHAFDESLGGRDFDEVLSSYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANAEAPLNIECL 289 (768)
Q Consensus 210 sv~~~~~~~~~vl~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~~~i~~l 289 (768)
+++.-. .++.+. ..++||+.++.. -+ ..+. .-.| ...+|++. +-..+
T Consensus 161 aVf~~G----~l~~T~-~l~vGG~~IT~D-~~---------~~i~-yis~-~~~~l~~~---~~~~~------------- 207 (475)
T PRK10719 161 ALFDAG----KVIDTA-CLNVGGRLIETD-SQ---------GRVT-YISP-PGQMILDE---LGLAI------------- 207 (475)
T ss_pred EEEECC----EEEEEE-EEecccceEEEC-CC---------CCEE-EECh-HHHHHHHH---cCCCc-------------
Confidence 998744 344444 678999987654 11 0000 0011 11112111 11001
Q ss_pred ccCcceEEEecHHHHHHHHHHHHHHHHHHHHH-------HHHhC-CCC-CCCcCEEEEecCCCCh
Q 004211 290 MNEKDVKGFIRREEFEKLSSSLLERMRIPCQK-------ALAGS-GLN-VEKIHSVELVGSGSRI 345 (768)
Q Consensus 290 ~~~~d~~~~itr~~fe~~~~~~~~~i~~~i~~-------~l~~~-~~~-~~~i~~V~LvGG~sri 345 (768)
..--.++.+++..+|+.+.+-+.+.+.. .|-.. .++ ...++.|.+.||-+..
T Consensus 208 ----~~G~~~~~~~L~~i~~~Ma~~l~~~i~~~~~~~~~~l~~~~~l~~~~~~~~i~fSGGVad~ 268 (475)
T PRK10719 208 ----TDGRSLTGEQLQQVTRRMAELLVEVIGGALSPLAQALMTTKLLPAGVPPEIITFSGGVGDC 268 (475)
T ss_pred ----cccccCCHHHHHHHHHHHHHHHHHHhCCCCChhHHhhccCCCCCCCCCCCEEEEecchHhh
Confidence 1112466788888887766666655541 11111 222 3568999999997654
No 54
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=98.62 E-value=1.1e-06 Score=96.85 Aligned_cols=192 Identities=13% Similarity=0.097 Sum_probs=111.8
Q ss_pred EEEEcCccceEEEEEEcCCceEEEeCCCCCcc-ceEEEE-eeCCceeecHHHHhhhhhCCcchHhHHHHhcCCCCCChHH
Q 004211 4 VGFDIGNENCVIAAVKQGGMLDVLLNDESKRE-TPTVVS-FSEKQRFLGSAGAASAMMNPKSTISQVKRLLGRKFREDDV 81 (768)
Q Consensus 4 iGID~GTt~s~va~~~~g~~~~ii~n~~~~r~-~Ps~V~-~~~~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~~ 81 (768)
|-||.||.++++++..+..|..+..+..+++. ..++.. -..+.+.+|..+...... +..
T Consensus 9 iVIDnGS~~~k~Gfag~~~P~~V~ps~~~~~~~~~~~~~~~~~~~~~v~ne~~~~~~~-~~~------------------ 69 (444)
T COG5277 9 IVIDNGSGTTKAGFAGNDTPTTVFPSIVGRRRDEDSVMEDTEEKDTYVGNEAQNDRDN-SLL------------------ 69 (444)
T ss_pred EEEeCCCceEEeeecCCCCceeecccccccccccccccccccccccccCchhhhccCC-ccc------------------
Confidence 78999999999999888776666655555543 333332 112334556555322100 000
Q ss_pred HhhhccCCceeeecCCCCEEEEEEecCceeEecHHHHHHHHHHHHHHHH-HhhccCCCCeEEEEeCCCCCHHHHHHHHHH
Q 004211 82 QKDLKLFPFETCESHDGGILIMLEYLGETHKFTPVQILGMLLSNLKQIT-EKNIKIPISNCVIGVPCYLTDVQRRAYLDA 160 (768)
Q Consensus 82 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~a~~L~~l~~~a-~~~~~~~~~~~VitVPa~~~~~qr~~l~~A 160 (768)
....+..+|. ...+... ..+.+++...- .......-..+++|-|..+....|..+.+.
T Consensus 70 --------~~~~p~~~g~----------i~~W~~~---e~~w~~~~~~~~~~~~~~~~~pllltep~~n~~~~re~~~e~ 128 (444)
T COG5277 70 --------ELRYPIENGI----------ILNWDAM---EQIWDYTFFNKGDLLPSPEEHPLLLTEPPLNPPSNREKITEL 128 (444)
T ss_pred --------eeecccccCc----------cCCcHHH---HHHHHHhhcchhhccCCCcCCceEEeccCCCcHHHHHHHHHH
Confidence 0000111222 2233332 23333333321 111122335799999999999998877665
Q ss_pred -HHHcCCCceeeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCCchhhHHHHH
Q 004211 161 -ATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEVL 239 (768)
Q Consensus 161 -a~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~d~~l 239 (768)
++...++.+.+...+.+++++.+.. ..+.+|+|+|.+.|+++-+- +|.. +........+||++++..|
T Consensus 129 ~fE~~~vp~~~~~~~~~l~~ya~g~~--------~~~g~ViD~G~~~t~v~PV~--DG~~-l~~a~~ri~~gG~~it~~l 197 (444)
T COG5277 129 LFETLNVPALYLAIQAVLSLYASGSS--------DETGLVIDSGDSVTHVIPVV--DGIV-LPKAVKRIDIGGRDITDYL 197 (444)
T ss_pred HHHhcCCcceEeeHHHHHHHHhcCCC--------CCceEEEEcCCCceeeEeee--cccc-ccccceeeecCcHHHHHHH
Confidence 4666666666666666666544321 14789999999999988764 3322 2233335679999999999
Q ss_pred HHHHHHH
Q 004211 240 SSYFAAQ 246 (768)
Q Consensus 240 ~~~l~~~ 246 (768)
.+.+...
T Consensus 198 ~~lL~~~ 204 (444)
T COG5277 198 KKLLREK 204 (444)
T ss_pred HHHHhhc
Confidence 9888874
No 55
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=98.59 E-value=1.4e-05 Score=81.09 Aligned_cols=177 Identities=17% Similarity=0.092 Sum_probs=98.6
Q ss_pred eccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEe-eCCeEEEEEEeCCCCCchhhHHHHHHHHHHHHHhh
Q 004211 171 LMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASY-ENGHMKILSHAFDESLGGRDFDEVLSSYFAAQFKQ 249 (768)
Q Consensus 171 li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~-~~~~~~vl~~~~~~~lGG~~~d~~l~~~l~~~~~~ 249 (768)
.++|.+|.|....+.. |..-.|+|+||-.+-+ +.+ .+|.+.-...+.-+.-|.-.|-+.+++.|
T Consensus 80 ~vtEIt~ha~GA~~~~-------p~~~tIiDIGGQD~K~--I~~~~~G~v~~f~MNdkCAAGTG~FLe~~A~~L------ 144 (262)
T TIGR02261 80 HFYSMTTHARGAIYLN-------PEARAVLDIGALHGRA--IRMDERGKVEAYKMTSQCASGSGQFLENIARYL------ 144 (262)
T ss_pred CeeEEeHHHHHHHHHC-------CCCCEEEEeCCCceEE--EEEcCCCcEeeEEecCcccccccHHHHHHHHHh------
Confidence 3568888876554322 2345899999987765 444 34555444555455666555555555444
Q ss_pred hcccCccCChHHHHHHHHHHHHHhhhcCCCCeeeEEEeccccCcceEEEecHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 004211 250 QYDIDVYTNVKASIRLRASCEKLKKVLSANAEAPLNIECLMNEKDVKGFIRREEFEKLSSSLLERMRIPCQKALAGSGLN 329 (768)
Q Consensus 250 ~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~~~i~~l~~~~d~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~ 329 (768)
++++. .+. ..+.+.+....-+....+..++-.-. -+.--.+| ++++..+...+...+-..+++.+..
T Consensus 145 --~i~le----el~---~~a~~~~~~~~iss~CtVFaeSevi~-~~~~G~~~---edI~aGl~~sia~r~~~~~~~~~~~ 211 (262)
T TIGR02261 145 --GIAQD----EIG---SLSQQADNPEKVSGICAVLAETDVIN-MVSRGISA---PNILKGIHESMADRLAKLLKSLGAL 211 (262)
T ss_pred --CCCHH----HHH---HHHhcCCCCCCcCCCceEEchhhHHH-HHHCCCCH---HHHHHHHHHHHHHHHHHHHhccCCC
Confidence 23221 111 22333333222222333333211000 00011233 3444455555555554455544321
Q ss_pred CCCcCEEEEecCCCChHHHHHHHHhhcC-CC----CCCcCCchhHHHhhHHHHh
Q 004211 330 VEKIHSVELVGSGSRIPAISRMLNSLFN-RE----PGRTINASECVARGCALQC 378 (768)
Q Consensus 330 ~~~i~~V~LvGG~srip~v~~~l~~~fg-~~----v~~~~n~~eava~GAa~~a 378 (768)
-..|+|+||.++.+.+.+.|++.++ .+ +..+.+|+.+.|+|||++|
T Consensus 212 ---~~~v~~~GGva~n~~~~~~le~~l~~~~~~~~v~~~~~~q~~gAlGAAl~~ 262 (262)
T TIGR02261 212 ---DGTVLCTGGLALDAGLLEALKDAIQEAKMAVAAENHPDAIYAGAIGAALWG 262 (262)
T ss_pred ---CCcEEEECcccccHHHHHHHHHHhccCCcceEecCCCcchHHHHHHHHHcC
Confidence 1349999999999999999999884 33 4556789999999999875
No 56
>PF07520 SrfB: Virulence factor SrfB; InterPro: IPR009216 This entry represents proteins of unknown function. It has been shown in Salmonella enterica that srfB is one of the genes activated by the global signal transduction/regulatory system SsrA/B []. This activation takes place within eukaryotic cells. The activated genes include pathogenicity island 2 (SPI-2) genes and at least 10 other genes (srfB is one of them) which are believed to be horizontally acquired, and to be involved in virulence/pathogenicity [].
Probab=98.41 E-value=5e-05 Score=88.88 Aligned_cols=329 Identities=18% Similarity=0.196 Sum_probs=185.2
Q ss_pred eecHHHHhhhhh----CCcchHhHHHHhcCCC--------CCChHH--Hhh--hccCCceeeecCCCCEEEEE-Eec---
Q 004211 48 FLGSAGAASAMM----NPKSTISQVKRLLGRK--------FREDDV--QKD--LKLFPFETCESHDGGILIML-EYL--- 107 (768)
Q Consensus 48 ~~G~~A~~~~~~----~~~~~~~~~k~llg~~--------~~~~~~--~~~--~~~~~~~~~~~~~g~~~~~v-~~~--- 107 (768)
-+|.+|...+.. .....+++.||.|.-. ++.... +.+ ....|+.-.-+++|.+.+.+ ...
T Consensus 331 RVG~EA~RLa~~r~GtEg~TGlSSPKRYLWDe~~~~q~WRFn~~~~~~~~eP~ata~p~~~liN~~G~~L~~l~~~~~r~ 410 (1002)
T PF07520_consen 331 RVGPEAARLASQRRGTEGSTGLSSPKRYLWDERPYEQGWRFNSAYVKSQNEPLATAAPFTNLINDDGQPLYQLDPEDERL 410 (1002)
T ss_pred eecHHHHHHHHHhcCCccccCCCCchhhccCCCccCCCcccCCCCCCCccCchhhhHHHHHhhcccCcchhhhcCccccC
Confidence 478888765542 2334478889988532 211111 000 11122222233456654444 110
Q ss_pred -CceeEecHHHHHHHHHHHHHHHHHhhccC--------------CCCeEEEEeCCCCCHHHHHHHHHHHHHc--------
Q 004211 108 -GETHKFTPVQILGMLLSNLKQITEKNIKI--------------PISNCVIGVPCYLTDVQRRAYLDAATIA-------- 164 (768)
Q Consensus 108 -~~~~~~~~eel~a~~L~~l~~~a~~~~~~--------------~~~~~VitVPa~~~~~qr~~l~~Aa~~A-------- 164 (768)
.-...||-..+..++|..+...|--+.+. ....+++|||+-....+|+.++++++.|
T Consensus 411 pvf~p~ySRSSLMtfML~EiL~QAL~QINSpa~R~r~~~~~~PR~LR~IILT~P~AMPk~Er~ifr~r~~~Ai~LvWk~l 490 (1002)
T PF07520_consen 411 PVFSPHYSRSSLMTFMLSEILAQALMQINSPAQRLRRGHSDAPRRLRRIILTLPPAMPKPEREIFRRRMEEAIGLVWKAL 490 (1002)
T ss_pred ccccccccHHHHHHHHHHHHHHHHHHHhcCHHHHhhcccCCCChhhhheeEECCCCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 11234666778888888877776544432 3567999999999999999999888765
Q ss_pred CCC---------------------ceeeccchHHHHHHhhhc------------------ccCC------CCCCCcEEEE
Q 004211 165 GLK---------------------PLRLMHDCTATALGYGIY------------------KTDF------SNVGPTYVVF 199 (768)
Q Consensus 165 Gl~---------------------~~~li~Ep~Aaal~y~~~------------------~~~~------~~~~~~~vlv 199 (768)
|.. +..=-+|.||.=+=|.+. +.+. .....-.|.-
T Consensus 491 Gw~~~~~~~~~~~~~~~~~~~~P~v~~~WDEATC~QlVyLYnE~~~~fgG~~~~FF~~~~rp~~~~~~~~~~~~slriAS 570 (1002)
T PF07520_consen 491 GWHPWDDDFDTNKDREKSWVPLPEVQMEWDEATCGQLVYLYNEIQVKFGGRAEEFFALMARPDRQPAPGEDPGPSLRIAS 570 (1002)
T ss_pred CCCCCCCCcccccccccccCCCCceeEEeecceeeeeeehhHHHHHHcCCCHHHHHHHhcCCCccccccCCCCCceEEEE
Confidence 432 111134555543323211 1111 0223457899
Q ss_pred EEeCCceEEEEEEEee----CC-eEEEEEE---eCCCCCchhhHHHHHHHH-HHHHHhhh----------------cccC
Q 004211 200 VDIGHCDTQVCVASYE----NG-HMKILSH---AFDESLGGRDFDEVLSSY-FAAQFKQQ----------------YDID 254 (768)
Q Consensus 200 ~D~GggT~dvsv~~~~----~~-~~~vl~~---~~~~~lGG~~~d~~l~~~-l~~~~~~~----------------~~~~ 254 (768)
+|+||||||+.|-.+. .| ...+.-. .-+-.+.|+||-..+++. ++..+... +|.+
T Consensus 571 IDIGGGTTDL~It~Y~ld~G~g~nv~I~P~q~FReGFkvAGDDiLldVI~~~VlPal~~aL~~aG~~~~~~ll~~LfG~d 650 (1002)
T PF07520_consen 571 IDIGGGTTDLMITQYRLDDGQGSNVKITPEQLFREGFKVAGDDILLDVIQRIVLPALQQALKKAGVADPRALLSRLFGGD 650 (1002)
T ss_pred EecCCCcceeeEEEEEeccCCcceeEECcchhhhhhcccccHHHHHHHHHHHhHHHHHHHHHHhcccCHHHHHHHHhCCc
Confidence 9999999999998886 22 2222221 123568899888876644 44333321 1111
Q ss_pred ccCC-hHH-------------HHHHHHHHHHHhhhcCCCCeeeEEEeccc---------------------------cCc
Q 004211 255 VYTN-VKA-------------SIRLRASCEKLKKVLSANAEAPLNIECLM---------------------------NEK 293 (768)
Q Consensus 255 ~~~~-~~~-------------~~rL~~~ae~~K~~Ls~~~~~~~~i~~l~---------------------------~~~ 293 (768)
-... .+. ..+++.++|..=..- ........+..+. +=.
T Consensus 651 g~~~~~~~lRqQ~~lQv~~Pi~l~iL~~yE~~d~~~-~~~~~~~~f~ell~~~~Pt~~vl~yi~~~~~~~~~~~~~Fdil 729 (1002)
T PF07520_consen 651 GQSDQDRVLRQQFTLQVFIPIGLAILKAYENYDPLD-PSAEIDATFGELLEREPPTAAVLDYINEEVRRLPAGAPDFDIL 729 (1002)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc-cCccccccHHHhcCCcCCcHHHHHHHHHHHhhcCCCCCCccee
Confidence 0000 000 123555555532100 0000111111110 112
Q ss_pred ceEEEecHHHHHHHHH---HHHHHHHHHHHHHHHhCCCCCCCcCEEEEecCCCChHHHHHHHHhhcCCCC----------
Q 004211 294 DVKGFIRREEFEKLSS---SLLERMRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNREP---------- 360 (768)
Q Consensus 294 d~~~~itr~~fe~~~~---~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~fg~~v---------- 360 (768)
++.+.|+...+...+. -.+......+-+++...+ -|.++|+|--||+|.||..+++..+.++
T Consensus 730 dv~l~i~~~~l~~~~~~~r~~i~~~L~~LcEvv~~Y~-----CDVLLLTGRPSrlPgvqalfr~~~pvPp~RIv~l~~Y~ 804 (1002)
T PF07520_consen 730 DVPLEIDLEKLHAAFLSDRMVICKTLRALCEVVHHYD-----CDVLLLTGRPSRLPGVQALFRHLLPVPPDRIVPLHGYR 804 (1002)
T ss_pred cceEEEcHHHHHHHHHhCcccHHHHHHHHHHHHHHhC-----CCEEEEcCCccccHHHHHHHHHhCCCCcccEEecCCee
Confidence 4567899999988774 556666666666666554 5679999999999999999999986443
Q ss_pred ----------CCcCCchhHHHhhHHHHhhHhc
Q 004211 361 ----------GRTINASECVARGCALQCAMLS 382 (768)
Q Consensus 361 ----------~~~~n~~eava~GAa~~a~~ls 382 (768)
.+--||-..||.||.+++....
T Consensus 805 tg~WYPF~~~~rI~dPKTTaaVGAmLc~La~~ 836 (1002)
T PF07520_consen 805 TGNWYPFNDQGRIDDPKTTAAVGAMLCLLAEG 836 (1002)
T ss_pred ecccccCCCCCcCCCchHHHHHHHHHHHHhcc
Confidence 2233899999999987765444
No 57
>PRK15027 xylulokinase; Provisional
Probab=98.18 E-value=0.00023 Score=81.06 Aligned_cols=85 Identities=16% Similarity=0.135 Sum_probs=61.1
Q ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEecCCCChHHHHHHHHhhcCCCCCCcCCchhHHHhhHHHH
Q 004211 298 FIRREEFEKLSSSLLERMRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQ 377 (768)
Q Consensus 298 ~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~GAa~~ 377 (768)
..+|.+|-..+-+-+.-....+-+.++..+. .++.|+++||+++++.+.+++.+.||.++....+.+++.++|||+.
T Consensus 355 ~~~~~~l~rAvlEgia~~~~~~~~~l~~~g~---~~~~i~~~GGga~s~~w~Qi~Adv~g~pv~~~~~~~~~~a~GaA~l 431 (484)
T PRK15027 355 QHGPNELARAVLEGVGYALADGMDVVHACGI---KPQSVTLIGGGARSEYWRQMLADISGQQLDYRTGGDVGPALGAARL 431 (484)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHcCC---CccEEEEeCcccCCHHHHHHHHHHhCCeEEeecCCCcchHHHHHHH
Confidence 3467666554443333333333344554443 4788999999999999999999999999966667777889999999
Q ss_pred hhHhcCCc
Q 004211 378 CAMLSPQY 385 (768)
Q Consensus 378 a~~ls~~~ 385 (768)
|+.-.+.+
T Consensus 432 A~~~~G~~ 439 (484)
T PRK15027 432 AQIAANPE 439 (484)
T ss_pred HHHhcCCc
Confidence 98766543
No 58
>PRK10331 L-fuculokinase; Provisional
Probab=98.17 E-value=0.00036 Score=79.15 Aligned_cols=53 Identities=19% Similarity=0.176 Sum_probs=45.0
Q ss_pred CcCEEEEecCCCChHHHHHHHHhhcCCCCCCcCCchhHHHhhHHHHhhHhcCCc
Q 004211 332 KIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQCAMLSPQY 385 (768)
Q Consensus 332 ~i~~V~LvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~GAa~~a~~ls~~~ 385 (768)
.++.|.++||+++.+.+.+++.+.||.++.... ..|+.++|||+.|+.-.+.+
T Consensus 389 ~~~~i~~~GGga~s~~w~Qi~Advlg~pV~~~~-~~e~~a~GaA~la~~~~G~~ 441 (470)
T PRK10331 389 KASELLLVGGGSRNALWNQIKANMLDIPIKVLD-DAETTVAGAAMFGWYGVGEF 441 (470)
T ss_pred CCceEEEEcccccCHHHHHHHHHhcCCeeEecC-cccchHHHHHHHHHHhcCCC
Confidence 478899999999999999999999999886555 45688999999998765543
No 59
>PRK13317 pantothenate kinase; Provisional
Probab=98.17 E-value=0.00027 Score=73.47 Aligned_cols=48 Identities=21% Similarity=0.243 Sum_probs=42.5
Q ss_pred CcCEEEEec-CCCChHHHHHHHHhhc---CCCCCCcCCchhHHHhhHHHHhh
Q 004211 332 KIHSVELVG-SGSRIPAISRMLNSLF---NREPGRTINASECVARGCALQCA 379 (768)
Q Consensus 332 ~i~~V~LvG-G~srip~v~~~l~~~f---g~~v~~~~n~~eava~GAa~~a~ 379 (768)
.+..|+++| |.++.|.+++.+.+.+ +.++..+.+|..+.|+|||+++.
T Consensus 222 ~~~~Ivf~G~gla~n~~l~~~l~~~l~~~~~~~~~p~~~~~~gAlGAaL~a~ 273 (277)
T PRK13317 222 NIENIVYIGSTLTNNPLLQEIIESYTKLRNCTPIFLENGGYSGAIGALLLAT 273 (277)
T ss_pred CCCeEEEECcccccCHHHHHHHHHHHhcCCceEEecCCCchhHHHHHHHHhh
Confidence 356799999 7999999999999988 57788899999999999999875
No 60
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=98.12 E-value=0.00026 Score=80.18 Aligned_cols=84 Identities=15% Similarity=0.073 Sum_probs=57.4
Q ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEecCCCChHHHHHHHHhhcCCCCCCcCCchhHHHhhHHHH
Q 004211 298 FIRREEFEKLSSSLLERMRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQ 377 (768)
Q Consensus 298 ~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~GAa~~ 377 (768)
.-+|.+|-..+-+-+.-....+-+.+++.+. ..++.|.++||++++|.+.+++.+.||.++....+ .++.++|||+.
T Consensus 361 ~~~~~~l~rAvlEgia~~~r~~~e~l~~~~~--~~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~~~~-~e~~~lGaA~~ 437 (465)
T TIGR02628 361 NTTRGHIYRAALEGLTAQLKRNLQMLEQIGQ--FKASELLLVGGGSKNTLWNQIRANMLDIPVKVVDD-AETTVAGAAMF 437 (465)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCcceEEEecCccCCHHHHHHhhhhcCCeeEeccC-CcchHHHHHHH
Confidence 3456665444333333233333344444431 13688999999999999999999999998865555 46889999999
Q ss_pred hhHhcCC
Q 004211 378 CAMLSPQ 384 (768)
Q Consensus 378 a~~ls~~ 384 (768)
|+.-.+.
T Consensus 438 a~~a~G~ 444 (465)
T TIGR02628 438 GFYGVGE 444 (465)
T ss_pred HHHhcCc
Confidence 9876554
No 61
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=97.96 E-value=0.0015 Score=74.91 Aligned_cols=52 Identities=12% Similarity=0.110 Sum_probs=44.7
Q ss_pred CcCEEEEecCCCChHHHHHHHHhhcCCCCCCcCCchhHHHhhHHHHhhHhcCC
Q 004211 332 KIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQCAMLSPQ 384 (768)
Q Consensus 332 ~i~~V~LvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~GAa~~a~~ls~~ 384 (768)
.++.|.++||+++.+.+.+++.+.||.++....++ |+.++|||+.|+.-.+.
T Consensus 401 ~~~~i~~~GGga~s~~w~Qi~Adv~g~pv~~~~~~-e~~a~GaA~la~~~~G~ 452 (505)
T TIGR01314 401 PLNMIQATGGFASSEVWRQMMSDIFEQEIVVPESY-ESSCLGACILGLKALGL 452 (505)
T ss_pred CCcEEEEecCcccCHHHHHHHHHHcCCeeEecCCC-CcchHHHHHHHHHhcCc
Confidence 47889999999999999999999999988655544 68899999999876554
No 62
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=97.91 E-value=0.00065 Score=77.53 Aligned_cols=81 Identities=20% Similarity=0.083 Sum_probs=53.1
Q ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCCCcCEEEEecCCCChHHHHHHHHhhcCCCCCCcCCchhHHHhhHHH
Q 004211 298 FIRREEFEKLSSSLLERMRIPCQKALAGS-GLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCAL 376 (768)
Q Consensus 298 ~itr~~fe~~~~~~~~~i~~~i~~~l~~~-~~~~~~i~~V~LvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~GAa~ 376 (768)
..+|.+|-+.+-+-+.-.....-+.|.+. +. .++.|.++||++|.+.+.+++.+.||.++..+.. .|+.+.|+|.
T Consensus 369 ~~~~~~l~ravlEgva~~l~~~~~~l~~~~g~---~~~~i~~~GGgars~~w~Qi~Ad~~g~~v~~~~~-~e~~a~g~A~ 444 (502)
T COG1070 369 PHTRAHLARAVLEGVAFALADGLEALEELGGK---PPSRVRVVGGGARSPLWLQILADALGLPVVVPEV-EEAGALGGAA 444 (502)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CccEEEEECCcccCHHHHHHHHHHcCCeeEecCc-ccchHHHHHH
Confidence 34676666554444433334434455544 43 4678999999999999999999999988875544 4555555555
Q ss_pred HhhHhc
Q 004211 377 QCAMLS 382 (768)
Q Consensus 377 ~a~~ls 382 (768)
.++...
T Consensus 445 ~~~~~~ 450 (502)
T COG1070 445 LAAAAL 450 (502)
T ss_pred HHHHHh
Confidence 555443
No 63
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=97.91 E-value=0.00025 Score=75.15 Aligned_cols=177 Identities=14% Similarity=0.143 Sum_probs=104.5
Q ss_pred eeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEee-CCeEEEEEEeCCCCCchhhHHHHHHHHHHHHHh
Q 004211 170 RLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYE-NGHMKILSHAFDESLGGRDFDEVLSSYFAAQFK 248 (768)
Q Consensus 170 ~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~-~~~~~vl~~~~~~~lGG~~~d~~l~~~l~~~~~ 248 (768)
.+++|.+|-|....+.. |..-.|+|+||-.+-+ +.+. +|.+.-...+..|.-|.-.|-+.+++.|
T Consensus 249 ~vitEItcHA~GA~~l~-------P~vrTIIDIGGQDsK~--I~ld~~G~V~dF~MNDKCAAGTGrFLE~mA~~L----- 314 (432)
T TIGR02259 249 HIRSEILCHGLGAHLMY-------PGTRTVLDIGGQDTKG--IQIDDHGIVENFQMNDRCAAGCGRYLGYIADEM----- 314 (432)
T ss_pred ceeeeHHHHHHHHHHHC-------CCCCEEEEeCCCceEE--EEEcCCCcEeeeeecCcccccchHHHHHHHHHc-----
Confidence 35689888887654432 3455899999987775 4454 3555444555456667666666555544
Q ss_pred hhcccCccCChHHHHHHHHHHHHHhhhcCCCCeeeEEEeccccCcceEEEecHHHHHHHHHHHHHHHHHHHHHHHHhC-C
Q 004211 249 QQYDIDVYTNVKASIRLRASCEKLKKVLSANAEAPLNIECLMNEKDVKGFIRREEFEKLSSSLLERMRIPCQKALAGS-G 327 (768)
Q Consensus 249 ~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~~~i~~l~~~~d~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~-~ 327 (768)
++++. . |-..+.+.+....-+....+.-++-.-. -+.--+++ ++++..+...+..-+...+.+. +
T Consensus 315 ---gi~le----E---l~~lA~~a~~pv~ISS~CtVFAESEVIs-lla~G~~r---eDIaAGL~~SIA~Rv~s~l~r~~~ 380 (432)
T TIGR02259 315 ---NMGLH----E---LGPLAMKSSKPARINSTCTVFAGAELRD-RLALGDKR---EDILAGLHRAIILRAISIISRSGG 380 (432)
T ss_pred ---CCCHH----H---HHHHHhcCCCCCCcCCcceEEehHHHHH-HHHCCCCH---HHHHHHHHHHHHHHHHHHHhcccC
Confidence 23221 1 2222333443333333333333321000 00011233 3444555555555555555544 2
Q ss_pred CCCCCcCEEEEecCCCChHHHHHHHHhhcC-----CCCCCcCCchhHHHhhHHHHh
Q 004211 328 LNVEKIHSVELVGSGSRIPAISRMLNSLFN-----REPGRTINASECVARGCALQC 378 (768)
Q Consensus 328 ~~~~~i~~V~LvGG~srip~v~~~l~~~fg-----~~v~~~~n~~eava~GAa~~a 378 (768)
+. ..|+|+||.++.+.+.+.|++.++ .++..+.+|+.+.|+|||++|
T Consensus 381 i~----~~VvftGGvA~N~gvv~aLe~~L~~~~~~~~V~Vp~~pq~~GALGAAL~a 432 (432)
T TIGR02259 381 IT----DQFTFTGGVAKNEAAVKELRKLIKENYGEVQINIDPDSIYTGALGASEFA 432 (432)
T ss_pred CC----CCEEEECCccccHHHHHHHHHHHccccCCCeEecCCCccHHHHHHHHHhC
Confidence 22 459999999999999999999994 567789999999999999875
No 64
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=97.91 E-value=0.00039 Score=75.59 Aligned_cols=116 Identities=16% Similarity=0.147 Sum_probs=64.4
Q ss_pred ecHHHHHHHHHHHHHHHHHhhccCCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCceee---ccchHHHHHHhhhcccCC
Q 004211 113 FTPVQILGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDVQRRAYLDAATIAGLKPLRL---MHDCTATALGYGIYKTDF 189 (768)
Q Consensus 113 ~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~AGl~~~~l---i~Ep~Aaal~y~~~~~~~ 189 (768)
+..+.+-..+.+..++.--.--...-.-++||==+--.++.|..+..-+..||==++.- -.|..=|+-..|... +
T Consensus 60 ID~~al~~iv~~eY~~Agi~p~~I~TGAVIITGETArKeNA~~v~~~Ls~~aGDFVVATAGPdLEsiiAgkGsGA~~--~ 137 (473)
T PF06277_consen 60 IDAEALKEIVEEEYRKAGITPEDIDTGAVIITGETARKENAREVLHALSGFAGDFVVATAGPDLESIIAGKGSGAAA--L 137 (473)
T ss_pred cCHHHHHHHHHHHHHHcCCCHHHCccccEEEecchhhhhhHHHHHHHHHHhcCCEEEEccCCCHHHHHhccCccHHH--H
Confidence 55555555555444432100000111234555555555677777777777776322211 123333332222111 1
Q ss_pred CCCCCcEEEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCCchhhH
Q 004211 190 SNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDF 235 (768)
Q Consensus 190 ~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~ 235 (768)
.......|+=+|+||||+.+++++-. +++++. -.++||+.|
T Consensus 138 S~~~~~~V~NiDIGGGTtN~avf~~G----~v~~T~-cl~IGGRLi 178 (473)
T PF06277_consen 138 SKEHHTVVANIDIGGGTTNIAVFDNG----EVIDTA-CLDIGGRLI 178 (473)
T ss_pred hhhhCCeEEEEEeCCCceeEEEEECC----EEEEEE-EEeeccEEE
Confidence 12457789999999999999998865 566666 568999865
No 65
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=97.85 E-value=0.00017 Score=72.00 Aligned_cols=189 Identities=17% Similarity=0.164 Sum_probs=99.4
Q ss_pred HHcCCCceeeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCCchhhHHHHHHH
Q 004211 162 TIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEVLSS 241 (768)
Q Consensus 162 ~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~d~~l~~ 241 (768)
+..|.++...=-|+.+|.+.....- ..+....++|+||||||.|++.-.+ .+.-+.-. -.|+-++..|..
T Consensus 106 ~~lgv~V~igGvEAemAi~GALTTP-----Gt~~PlaIlDmG~GSTDAsii~~~g-~v~~iHlA----GAG~mVTmlI~s 175 (332)
T PF08841_consen 106 EELGVPVEIGGVEAEMAILGALTTP-----GTDKPLAILDMGGGSTDASIINRDG-EVTAIHLA----GAGNMVTMLINS 175 (332)
T ss_dssp HHHTSEEEEECEHHHHHHHHHTTST-----T--SSEEEEEE-SSEEEEEEE-TTS--EEEEEEE-----SHHHHHHHHHH
T ss_pred HHHCCceEEccccHHHHHhcccCCC-----CCCCCeEEEecCCCcccHHHhCCCC-cEEEEEec----CCchhhHHHHHH
Confidence 4568887777789999988765433 3456799999999999999997653 33333322 246666666543
Q ss_pred HHHHHHhhhcccCccCChHHHHHHHHHHHHHhhhcCCCCeeeEEEe-------c---------------cccC--cceEE
Q 004211 242 YFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANAEAPLNIE-------C---------------LMNE--KDVKG 297 (768)
Q Consensus 242 ~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~~~i~-------~---------------l~~~--~d~~~ 297 (768)
.| +++.. .-||.+|+.=-+.-+..+++. + +-++ ..+..
T Consensus 176 EL--------Gl~d~----------~lAE~IKkyPlaKVEslfhiR~EDGtv~Ffd~pl~p~~faRvvi~~~~~lvPi~~ 237 (332)
T PF08841_consen 176 EL--------GLEDR----------ELAEDIKKYPLAKVESLFHIRHEDGTVQFFDEPLDPDVFARVVILKEDGLVPIPG 237 (332)
T ss_dssp HC--------T-S-H----------HHHHHHHHS-EEEEECTTEEEETTS-EEE-SS---CCCTTSEEEECTTEEEEESS
T ss_pred hh--------CCCCH----------HHHHHhhhcchhhhccceEEEecCCceEEecCCCChHHeeEEEEecCCceeecCC
Confidence 32 22111 446666653211111111110 0 0010 01111
Q ss_pred EecHHHHHHHHHHHHHH-HHHHHHHHHHhC--CCCCCCcCEEEEecCCCChHHHHHHHHhhcC--------CCCCCcCCc
Q 004211 298 FIRREEFEKLSSSLLER-MRIPCQKALAGS--GLNVEKIHSVELVGSGSRIPAISRMLNSLFN--------REPGRTINA 366 (768)
Q Consensus 298 ~itr~~fe~~~~~~~~~-i~~~i~~~l~~~--~~~~~~i~~V~LvGG~srip~v~~~l~~~fg--------~~v~~~~n~ 366 (768)
.++-+.+..+-+..-++ +....-++|++- .-+..+|+.|+|+|||+.=.-|-+++.+.+. -.+.-..-|
T Consensus 238 ~~~lEkir~vRr~AK~kVFVtNa~RaL~~vsPtgniR~i~fVVlVGGSALDFEIp~~vtdaLs~y~iVaGRgNIrG~eGP 317 (332)
T PF08841_consen 238 DLSLEKIRSVRREAKEKVFVTNALRALKQVSPTGNIRDIPFVVLVGGSALDFEIPQMVTDALSHYGIVAGRGNIRGVEGP 317 (332)
T ss_dssp TS-HHHHHHHHHHHHHHHHHHHHHHHHCCCSTTSSCCC--EEEEESGGGGSSSHHHHHHHHHCTTT-EEEE--GGGTSTT
T ss_pred CccHHHHHHHHHHhhhhhhHHHHHHHHHhcCCCCCcccCceEEEecCchhhhhhHHHHHHHHhhCcceeeccccccccCc
Confidence 22333333322222222 223344555553 2344589999999999987777777777762 244556678
Q ss_pred hhHHHhhHHHHh
Q 004211 367 SECVARGCALQC 378 (768)
Q Consensus 367 ~eava~GAa~~a 378 (768)
..|||.|.++.-
T Consensus 318 RNAVATGLvlsy 329 (332)
T PF08841_consen 318 RNAVATGLVLSY 329 (332)
T ss_dssp STHHHHHHHHHH
T ss_pred hHHHHHHHHHhh
Confidence 999999998643
No 66
>KOG0676 consensus Actin and related proteins [Cytoskeleton]
Probab=97.79 E-value=0.00025 Score=75.57 Aligned_cols=91 Identities=19% Similarity=0.220 Sum_probs=60.0
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHH-HHcCCCceeeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEE-EEEEEeeC
Q 004211 139 SNCVIGVPCYLTDVQRRAYLDAA-TIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQ-VCVASYEN 216 (768)
Q Consensus 139 ~~~VitVPa~~~~~qr~~l~~Aa-~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~d-vsv~~~~~ 216 (768)
..+++|-|+.+...-|+.+-+.. +..+.+-+.+ .. .|.+ |+..+ .+-+|+|+|.|-+. +-+++
T Consensus 100 ~pvllte~pl~p~~nREk~tqi~FE~fnvpa~yv--a~-qavl-ya~g~--------ttG~VvD~G~gvt~~vPI~e--- 164 (372)
T KOG0676|consen 100 HPVLLTEPPLNPKANREKLTQIMFETFNVPALYV--AI-QAVL-YASGR--------TTGLVVDSGDGVTHVVPIYE--- 164 (372)
T ss_pred CceEeecCCCCchHhHHHHHHHhhhhcCccHhHH--HH-HHHH-HHcCC--------eeEEEEEcCCCceeeeeccc---
Confidence 57999999999999998887764 3333333333 22 2322 55433 46799999999765 44443
Q ss_pred CeEEEEEEeCCCCCchhhHHHHHHHHHHH
Q 004211 217 GHMKILSHAFDESLGGRDFDEVLSSYFAA 245 (768)
Q Consensus 217 ~~~~vl~~~~~~~lGG~~~d~~l~~~l~~ 245 (768)
| +.+...-....+||++++..|...|.+
T Consensus 165 G-~~lp~ai~~ldl~G~dlt~~l~~~L~~ 192 (372)
T KOG0676|consen 165 G-YALPHAILRLDLAGRDLTDYLLKQLRK 192 (372)
T ss_pred c-cccchhhheecccchhhHHHHHHHHHh
Confidence 2 223333446789999999988777765
No 67
>COG4457 SrfB Uncharacterized protein conserved in bacteria, putative virulence factor [Function unknown]
Probab=97.73 E-value=0.0046 Score=68.47 Aligned_cols=84 Identities=17% Similarity=0.078 Sum_probs=52.1
Q ss_pred EEEecHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEecCCCChHHHHHHHHhhcCCCC---------------
Q 004211 296 KGFIRREEFEKLSSSLLERMRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNREP--------------- 360 (768)
Q Consensus 296 ~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~fg~~v--------------- 360 (768)
-+.|.-.++++.+-..--.|...+..+.+..+ .-+-|.++|+|--||+|.||..++...+.++
T Consensus 744 pl~i~~~ql~e~~ls~~~~i~~~f~al~EaIn--~y~cDVlLlTGRPsrlPgvqalfr~~~pvp~~rilpl~~Yrvg~WY 821 (1014)
T COG4457 744 PLAIDLSQLHECFLSGDYDITGVFDALCEAIN--HYDCDVLLLTGRPSRLPGVQALFRHLQPVPVNRILPLDDYRVGTWY 821 (1014)
T ss_pred ceeccHHHHHHHHhhCcccccchHHHHHHHHh--hhcccEEEEcCCcccCccHHHHHhhcCCCCCCceEeccceecccee
Confidence 34566666655443220113333333333222 1245779999999999999999998875433
Q ss_pred -----CCcCCchhHHHhhHHHHhhHh
Q 004211 361 -----GRTINASECVARGCALQCAML 381 (768)
Q Consensus 361 -----~~~~n~~eava~GAa~~a~~l 381 (768)
.+-.||...+|.||-+++..+
T Consensus 822 PF~k~grIddPKtTAaVGAMLC~Lsl 847 (1014)
T COG4457 822 PFRKQGRIDDPKTTAAVGAMLCALSL 847 (1014)
T ss_pred cccccCcCCCcchHHHHHHHHHHHHh
Confidence 233489999999998776554
No 68
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=97.11 E-value=0.0035 Score=64.02 Aligned_cols=39 Identities=28% Similarity=0.257 Sum_probs=29.1
Q ss_pred CCCcEEEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCCchhhH
Q 004211 192 VGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDF 235 (768)
Q Consensus 192 ~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~ 235 (768)
+....++-+|+||||+..|++.-. ++..+. -.++||+-+
T Consensus 142 qr~t~v~NlDIGGGTtN~slFD~G----kv~dTa-CLdiGGRLi 180 (473)
T COG4819 142 QRLTRVLNLDIGGGTTNYSLFDAG----KVSDTA-CLDIGGRLI 180 (473)
T ss_pred hhceEEEEEeccCCccceeeeccc----ccccce-eeecCcEEE
Confidence 456789999999999999997654 345544 356888855
No 69
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=96.94 E-value=0.069 Score=59.01 Aligned_cols=215 Identities=15% Similarity=0.101 Sum_probs=120.5
Q ss_pred HHHHHHHHHcCCCcee----eccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEee---CC----eEEEEE
Q 004211 155 RAYLDAATIAGLKPLR----LMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYE---NG----HMKILS 223 (768)
Q Consensus 155 ~~l~~Aa~~AGl~~~~----li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~---~~----~~~vl~ 223 (768)
....++|+..||..-. -+=+.-|.+++-+.- . ..-|++=+|-+||.+.+-.-. .| ....+-
T Consensus 232 ~Lt~e~A~~lGL~~~~~Vs~g~IDAhag~~Gv~~~-------~-~~~l~~I~GTStC~m~~s~~~~~v~GvwGpy~~ai~ 303 (544)
T COG1069 232 GLTPEAAQELGLPEGTVVSAGIIDAHAGAVGVGGA-------Q-PGSLAMIAGTSTCHMLLSEKPRFVPGVWGPYDGAVL 303 (544)
T ss_pred ccCHHHHHHhCCCCCcEEeccceeccccccccccC-------C-CCeEEEEeccceEEEEecCCceecCccccccccccC
Confidence 4566889999986322 222334444333211 1 234555578888887765432 11 112222
Q ss_pred EeCCCCCchhhHHHHHHHHHHHHHhh---------hcccCccCChHHHHHHHHHHHHHhhhcCCCCeeeEEEeccccC--
Q 004211 224 HAFDESLGGRDFDEVLSSYFAAQFKQ---------QYDIDVYTNVKASIRLRASCEKLKKVLSANAEAPLNIECLMNE-- 292 (768)
Q Consensus 224 ~~~~~~lGG~~~d~~l~~~l~~~~~~---------~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~~~i~~l~~~-- 292 (768)
-++-..=||..-.-.|.+||.+.... +++.++. .....++..-+++.+...+-... .+.++.+..+
T Consensus 304 Pg~~~~EgGQSatG~l~dhl~~~h~~~~e~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~l~~~-l~~l~~f~GNRs 380 (544)
T COG1069 304 PGLWLYEGGQSATGDLLDHLVRTHPAPLEQLAAHPKDGEEIY--ESLAQRLELLTEAAAAIPPLASG-LHVLDWFNGNRS 380 (544)
T ss_pred cchhhhcccchhhhHHHHHHHHhCCcccchhhccchhhhHHH--HHHHHHHHHHHhhHhccCcccCC-cEecccccCCcC
Confidence 23234457888888888888865211 1111110 11233444444555554432211 1222221111
Q ss_pred ----c-------ceEEEecHHHHHHHHHHHHHHHH---HHHHHHHHhCCCCCCCcCEEEEecCCCChHHHHHHHHhhcCC
Q 004211 293 ----K-------DVKGFIRREEFEKLSSSLLERMR---IPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNR 358 (768)
Q Consensus 293 ----~-------d~~~~itr~~fe~~~~~~~~~i~---~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~fg~ 358 (768)
- .+++.-+.+.+-.+....+.-+. ..|-+++++.|+. |+.|+.+||..+.|.+.+.+.+..|.
T Consensus 381 P~aDp~l~G~i~GltL~T~~~~l~~lY~a~l~a~A~GtR~Iie~~~~~g~~---Id~l~~sGG~~KN~llmql~aDvtg~ 457 (544)
T COG1069 381 PLADPRLKGVITGLTLDTSPESLALLYRALLEATAFGTRAIIETFEDQGIA---IDTLFASGGIRKNPLLMQLYADVTGR 457 (544)
T ss_pred CCCCccceeEEeccccCCCcHHHHHHHHHHHHHHHHhHHHHHHHHHHcCCe---eeEEEecCCcccCHHHHHHHHHhcCC
Confidence 1 12223344444444444444333 4455666666764 89999999999999999999999998
Q ss_pred CCCCcCCchhHHHhhHHHHhhHhcCC
Q 004211 359 EPGRTINASECVARGCALQCAMLSPQ 384 (768)
Q Consensus 359 ~v~~~~n~~eava~GAa~~a~~ls~~ 384 (768)
++... -.++++++|+|+.|+.-.+.
T Consensus 458 ~v~i~-~s~~a~llGsAm~~avAag~ 482 (544)
T COG1069 458 PVVIP-ASDQAVLLGAAMFAAVAAGV 482 (544)
T ss_pred eEEee-cccchhhhHHHHHHHHHhcc
Confidence 87666 67899999999999876654
No 70
>KOG0797 consensus Actin-related protein [Cytoskeleton]
Probab=96.90 E-value=0.0075 Score=65.10 Aligned_cols=122 Identities=17% Similarity=0.245 Sum_probs=86.3
Q ss_pred eEecHHHHHHHHHHHHHHHHHhhccCCC-----CeEEEEeCCCCCHHHHHHHHHH-HHHcCCCceeeccchHHHHHHhhh
Q 004211 111 HKFTPVQILGMLLSNLKQITEKNIKIPI-----SNCVIGVPCYLTDVQRRAYLDA-ATIAGLKPLRLMHDCTATALGYGI 184 (768)
Q Consensus 111 ~~~~~eel~a~~L~~l~~~a~~~~~~~~-----~~~VitVPa~~~~~qr~~l~~A-a~~AGl~~~~li~Ep~Aaal~y~~ 184 (768)
..++..++++.+-+-+.-.....++.+. ..+|+-||-.|....-+.+... ....||....++-|..||.+..|+
T Consensus 195 ~y~Slq~l~~dlt~il~yaL~e~L~Ip~~kl~qy~aVlVVpD~f~r~hveefl~ilL~eL~F~~~~v~QESlaatfGaGl 274 (618)
T KOG0797|consen 195 PYYSLQRLCEDLTAILDYALLEKLHIPHKKLFQYHAVLVVPDTFDRRHVEEFLTILLGELGFNSAVVHQESLAATFGAGL 274 (618)
T ss_pred cchhHHHHHHHHHHHHHHHHHHhcCCChhHhcceeEEEEecchhhHHHHHHHHHHHHHHhccceEEEEhhhhHHHhcCCc
Confidence 3456666666554444333344444443 3689999999998776555554 567899999999999999977765
Q ss_pred cccCCCCCCCcEEEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCCchhhHHHHHHHHHHH
Q 004211 185 YKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEVLSSYFAA 245 (768)
Q Consensus 185 ~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~d~~l~~~l~~ 245 (768)
. .-.|||||+.+|.++.|+ +|. .+..+.--...||.||++.++-++..
T Consensus 275 s----------s~CVVdiGAQkTsIaCVE--dGv-s~~ntri~L~YGGdDitr~f~~ll~r 322 (618)
T KOG0797|consen 275 S----------SACVVDIGAQKTSIACVE--DGV-SLPNTRIILPYGGDDITRCFLWLLRR 322 (618)
T ss_pred c----------ceeEEEccCcceeEEEee--cCc-cccCceEEeccCCchHHHHHHHHHHh
Confidence 3 468999999999998876 332 23333334668999999999877664
No 71
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=96.79 E-value=0.0014 Score=64.97 Aligned_cols=72 Identities=25% Similarity=0.402 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhC----CCCCCCcCEEEEecCCCChHHHHHHHHhhcCCCCCCcCCchhHHHhhHHHHhhH
Q 004211 305 EKLSSSLLERMRIPCQKALAGS----GLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQCAM 380 (768)
Q Consensus 305 e~~~~~~~~~i~~~i~~~l~~~----~~~~~~i~~V~LvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~GAa~~a~~ 380 (768)
.++++.+++.+.-.++..++.. +. .++.|+++||.++.|.+.+++.+.||.++....+ .++.|.|||+.|+.
T Consensus 121 ~~~~rAv~Egia~~~~~~~~~l~~~~~~---~~~~i~~~GG~~~n~~~~q~~Advl~~~V~~~~~-~e~~a~GaA~~A~~ 196 (198)
T PF02782_consen 121 ADLARAVLEGIAFSLRQILEELEELTGI---PIRRIRVSGGGAKNPLWMQILADVLGRPVVRPEV-EEASALGAALLAAV 196 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTS---CESEEEEESGGGGSHHHHHHHHHHHTSEEEEESS-STHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHhhhhccccccc---cceeeEeccccccChHHHHHHHHHhCCceEeCCC-CchHHHHHHHHHHh
Confidence 3444445555554444444433 44 4889999999999999999999999988866655 88999999999874
No 72
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=96.44 E-value=0.48 Score=49.43 Aligned_cols=70 Identities=16% Similarity=0.105 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEecCCCChHHHHHHHHhhcC-----CCCCCcCCchhHHHhhHHHHh
Q 004211 306 KLSSSLLERMRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFN-----REPGRTINASECVARGCALQC 378 (768)
Q Consensus 306 ~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~fg-----~~v~~~~n~~eava~GAa~~a 378 (768)
++++...+.+...+..++.+.+..... |+|+||..+.+.+++.+.+.+. .++.....|....|.|||++|
T Consensus 197 ~Il~~a~~~la~~i~~~~~~~~~~~~~---v~l~GGv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~a~GAallA 271 (271)
T PF01869_consen 197 DILAEAADELAELIKAVLKRLGPEKEP---VVLSGGVFKNSPLVKALRDALKEKLPKVPIIIPVEPQYDPAYGAALLA 271 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTCCCCS---EEEESGGGGCHHHHHHHGGGS-HHHHCCTCECECCGSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCe---EEEECCccCchHHHHHHHHHHHHhcCCCceEECCCCCccHHHHHHHhC
Confidence 455555666666777777766543222 9999999999888777765552 445677889999999999986
No 73
>KOG0677 consensus Actin-related protein Arp2/3 complex, subunit Arp2 [Cytoskeleton]
Probab=96.38 E-value=0.11 Score=51.42 Aligned_cols=195 Identities=15% Similarity=0.153 Sum_probs=111.8
Q ss_pred CCCeEEEEeCCCCCHHHHHHHHHH-HHHcCCCceeeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEee
Q 004211 137 PISNCVIGVPCYLTDVQRRAYLDA-ATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYE 215 (768)
Q Consensus 137 ~~~~~VitVPa~~~~~qr~~l~~A-a~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~ 215 (768)
....+.+|-|+--....|+.|.+. .+.-||.-+.+.-. |+..-|+... ..-+|+|-|.|-|-+.-+.-.
T Consensus 100 ~~~KiLLTePPmNP~kNREKm~evMFEkY~F~gvyvaiQ--AVLtLYAQGL--------~tGvVvDSGDGVTHi~PVye~ 169 (389)
T KOG0677|consen 100 TNCKILLTEPPMNPTKNREKMIEVMFEKYGFGGVYVAIQ--AVLTLYAQGL--------LTGVVVDSGDGVTHIVPVYEG 169 (389)
T ss_pred ccCeEEeeCCCCCccccHHHHHHHHHHHcCCCeEEehHH--HHHHHHHhcc--------cceEEEecCCCeeEEeeeecc
Confidence 345788899988887888877766 57788886655433 3332343221 235899999998887655321
Q ss_pred CCeEEEEEEeCCCCCchhhHHHHHHHHHHHHHhhhcccCccCChHHHHHHHHHHHHHhhhcCCC-----------CeeeE
Q 004211 216 NGHMKILSHAFDESLGGRDFDEVLSSYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSAN-----------AEAPL 284 (768)
Q Consensus 216 ~~~~~vl~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~-----------~~~~~ 284 (768)
+..-.-.....+.|+++++-|.+.+..+ -|..+-+.+ ++.....|+.|+.- -++++
T Consensus 170 ---~~l~HLtrRldvAGRdiTryLi~LLl~r---GYafN~tAD-------FETVR~iKEKLCYisYd~e~e~kLalETTv 236 (389)
T KOG0677|consen 170 ---FVLPHLTRRLDVAGRDITRYLIKLLLRR---GYAFNHTAD-------FETVREIKEKLCYISYDLELEQKLALETTV 236 (389)
T ss_pred ---eehhhhhhhccccchhHHHHHHHHHHhh---ccccccccc-------hHHHHHHHhhheeEeechhhhhHhhhhhee
Confidence 1111112346689999999999988754 122221111 13444555555321 11222
Q ss_pred EEec--cccCcceEEEecHHHHH---HHHHHHH-----HHHHHHHHHHHHhCCCCCC--CcCEEEEecCCCChHHHHHHH
Q 004211 285 NIEC--LMNEKDVKGFIRREEFE---KLSSSLL-----ERMRIPCQKALAGSGLNVE--KIHSVELVGSGSRIPAISRML 352 (768)
Q Consensus 285 ~i~~--l~~~~d~~~~itr~~fe---~~~~~~~-----~~i~~~i~~~l~~~~~~~~--~i~~V~LvGG~srip~v~~~l 352 (768)
-+++ |-+|. .+++--+.|+ .+++|-+ ..+.+++-.+++.+.+... --.+|+|.||++.-|.+-..|
T Consensus 237 Lv~~YtLPDGR--vIkvG~ERFeAPE~LFqP~Li~VE~~G~aellF~~iQaaDiD~R~~lYkhIVLSGGstMYPGLPSRL 314 (389)
T KOG0677|consen 237 LVESYTLPDGR--VIKVGGERFEAPEALFQPHLINVEGPGVAELLFNTIQAADIDIRSELYKHIVLSGGSTMYPGLPSRL 314 (389)
T ss_pred eeeeeecCCCc--EEEecceeccCchhhcCcceeccCCCcHHHHHHHHHHHhccchHHHHHhHeeecCCcccCCCCcHHH
Confidence 2222 22222 3455556664 4455432 2344555566665543221 236899999999999888777
Q ss_pred Hhhc
Q 004211 353 NSLF 356 (768)
Q Consensus 353 ~~~f 356 (768)
++.+
T Consensus 315 EkEl 318 (389)
T KOG0677|consen 315 EKEL 318 (389)
T ss_pred HHHH
Confidence 6654
No 74
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=96.14 E-value=0.014 Score=67.32 Aligned_cols=86 Identities=13% Similarity=0.114 Sum_probs=63.6
Q ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEecCCCChHHHHHHHHhhcCCCCCCcCCchhHHHhhHHHH
Q 004211 298 FIRREEFEKLSSSLLERMRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQ 377 (768)
Q Consensus 298 ~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~GAa~~ 377 (768)
.-+|..+..+++.+++-+.-.++..++...-....++.|.++||+++++.+.+.+.+.+|.++....+ .|+.++|||++
T Consensus 409 ~~~~~~~~~~~rAvlEgiaf~~r~~~e~l~~~g~~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~~-~e~~alGaA~l 487 (541)
T TIGR01315 409 DRSKDGLALLYYATMEFIAYGTRQIVEAMNTAGHTIKSIFMSGGQCQNPLLMQLIADACDMPVLIPYV-NEAVLHGAAML 487 (541)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccEEEEecCcccCHHHHHHHHHHHCCeeEecCh-hHHHHHHHHHH
Confidence 44676677777777777665555555443111124788999999999999999999999998866655 56889999999
Q ss_pred hhHhcCC
Q 004211 378 CAMLSPQ 384 (768)
Q Consensus 378 a~~ls~~ 384 (768)
|+.-.+.
T Consensus 488 A~~~~G~ 494 (541)
T TIGR01315 488 GAKAAGT 494 (541)
T ss_pred HHHhcCc
Confidence 9866554
No 75
>PLN02669 xylulokinase
Probab=96.10 E-value=0.014 Score=67.30 Aligned_cols=77 Identities=14% Similarity=0.185 Sum_probs=55.8
Q ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEecCCCChHHHHHHHHhhcCCCCCCcCCchhHHHhhHHHHh
Q 004211 299 IRREEFEKLSSSLLERMRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQC 378 (768)
Q Consensus 299 itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~GAa~~a 378 (768)
.+|.+ +++.+++.+.-.++..++..+.. ..++.|+++||+|+.+.+.+.+.+.||.++.....+ ++.|+|||+.|
T Consensus 416 ~~~~~---~~RAvlEg~a~~~r~~~~~l~~~-~~~~~i~~~GGgs~s~~w~Qi~ADVlg~pV~~~~~~-ea~alGAA~~A 490 (556)
T PLN02669 416 FDPPS---EVRAIIEGQFLSMRAHAERFGMP-VPPKRIIATGGASANQSILKLIASIFGCDVYTVQRP-DSASLGAALRA 490 (556)
T ss_pred CCHHH---HHHHHHHHHHHHHHHHHHHHhCC-CCCcEEEEEcChhcCHHHHHHHHHHcCCCeEecCCC-CchHHHHHHHH
Confidence 35555 34445555544444444444332 357899999999999999999999999888665554 78899999999
Q ss_pred hH
Q 004211 379 AM 380 (768)
Q Consensus 379 ~~ 380 (768)
+.
T Consensus 491 ~~ 492 (556)
T PLN02669 491 AH 492 (556)
T ss_pred HH
Confidence 75
No 76
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=95.88 E-value=0.23 Score=54.49 Aligned_cols=84 Identities=13% Similarity=0.168 Sum_probs=49.2
Q ss_pred cceEEEecHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEecCCCChHHHHHHHH-hhcCC-CCCCcCCchhHH
Q 004211 293 KDVKGFIRREEFEKLSSSLLERMRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLN-SLFNR-EPGRTINASECV 370 (768)
Q Consensus 293 ~d~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~-~~fg~-~v~~~~n~~eav 370 (768)
..-.+.||..++.++.. --..+..-++-.|+++|++.++|+.|+|.||++.-=-+++.+. -.++. ...+-.-.-.++
T Consensus 289 ~~~~i~itq~DIr~~ql-AKaAi~aGi~~Ll~~agi~~~di~~v~lAG~FG~~l~~~~a~~iGLlP~~~~~kv~~~GN~a 367 (412)
T PF14574_consen 289 IGDDIYITQKDIREFQL-AKAAIRAGIEILLEEAGISPEDIDRVYLAGGFGNYLDPESAIRIGLLPDVPAEKVRFVGNAA 367 (412)
T ss_dssp SSS-EEEEHHHHHHHHH-HHHHHHHHHHHHHHHTT--GGG--EEEEECSS-SEEEHHHHHHTTSS--S-GGGEEEEC-HH
T ss_pred CCCCEEEeHHHHHHHHH-HHHHHHHHHHHHHHHcCCCHHHccEEEEeCcccccCCHHHHhhcCCCCCccccCEEEECcHH
Confidence 34457899999977633 2344566778889999999999999999999998777777665 23331 111222223355
Q ss_pred HhhHHHH
Q 004211 371 ARGCALQ 377 (768)
Q Consensus 371 a~GAa~~ 377 (768)
-.||.+.
T Consensus 368 l~GA~~~ 374 (412)
T PF14574_consen 368 LAGARMA 374 (412)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5566543
No 77
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=95.64 E-value=0.022 Score=51.47 Aligned_cols=48 Identities=29% Similarity=0.444 Sum_probs=28.3
Q ss_pred EEEEEeCCceEEEEEEEee-CCeEEEEEEeCCCCCc--hhhHH--HHHHHHHH
Q 004211 197 VVFVDIGHCDTQVCVASYE-NGHMKILSHAFDESLG--GRDFD--EVLSSYFA 244 (768)
Q Consensus 197 vlv~D~GggT~dvsv~~~~-~~~~~vl~~~~~~~lG--G~~~d--~~l~~~l~ 244 (768)
++++|+|++++.+.+++.. .+.+.++..+....-| |..|. +.+..-+.
T Consensus 1 i~~iDiGs~~~~~~i~~~~~~~~~~vl~~g~~~s~gi~~g~Itd~~~i~~~i~ 53 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDGSDGYIRVLGVGEVPSKGIKGGHITDIEDISKAIK 53 (120)
T ss_dssp EEEEEE-SSSEEEEEEETTEEEEEEEES----------HHHHH--HHHHHHHT
T ss_pred CEEEEcCCCcEEEEEEEeCCCCcEEEEEEecccccccCCCEEEEHHHHHHHHH
Confidence 6899999999999999873 3455555444222222 77777 66665553
No 78
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=95.63 E-value=0.039 Score=63.73 Aligned_cols=83 Identities=13% Similarity=0.085 Sum_probs=58.4
Q ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEecCC-CChHHHHHHHHhhcCCCCCCcCCchhHHHhhHHH
Q 004211 298 FIRREEFEKLSSSLLERMRIPCQKALAGSGLNVEKIHSVELVGSG-SRIPAISRMLNSLFNREPGRTINASECVARGCAL 376 (768)
Q Consensus 298 ~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~-srip~v~~~l~~~fg~~v~~~~n~~eava~GAa~ 376 (768)
.-+|.+|-..+-+-+---...+-+.|++.|. .++.|+++||+ ++.+.+.+++.+.||.+|....++ |+.|+|||+
T Consensus 404 ~~~~~~~~RAvlEgia~~~~~~l~~l~~~g~---~~~~i~~~GGg~a~s~~w~Qi~Adv~g~pV~~~~~~-e~~a~GaA~ 479 (536)
T TIGR01234 404 ATDAPLLYRALIEATAFGTRMIMETFTDSGV---PVEELMAAGGIARKNPVIMQIYADVTNRPLQIVASD-QAPALGAAI 479 (536)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CcceEEEeCCccccCHHHHHHHHHhhCCeeEeccCC-cchhHHHHH
Confidence 3456665544443333222333344444454 47889999999 999999999999999988666654 688999999
Q ss_pred HhhHhcCC
Q 004211 377 QCAMLSPQ 384 (768)
Q Consensus 377 ~a~~ls~~ 384 (768)
.|+.-.+.
T Consensus 480 lA~~~~G~ 487 (536)
T TIGR01234 480 FAAVAAGV 487 (536)
T ss_pred HHHHHcCC
Confidence 99876554
No 79
>KOG0680 consensus Actin-related protein - Arp6p [Cytoskeleton]
Probab=95.58 E-value=0.8 Score=47.26 Aligned_cols=102 Identities=13% Similarity=0.152 Sum_probs=57.4
Q ss_pred CCeEEEEeCCCCCHHHHH-HHHHHHHHcCCCceeeccchHHHHHHhh---hcccCCCCCCCcEEEEEEeCCceEEEEEEE
Q 004211 138 ISNCVIGVPCYLTDVQRR-AYLDAATIAGLKPLRLMHDCTATALGYG---IYKTDFSNVGPTYVVFVDIGHCDTQVCVAS 213 (768)
Q Consensus 138 ~~~~VitVPa~~~~~qr~-~l~~Aa~~AGl~~~~li~Ep~Aaal~y~---~~~~~~~~~~~~~vlv~D~GggT~dvsv~~ 213 (768)
-..+|+|=|.+--++-.. ...-..+.-++.-+ ..-+.|+.+++- ....+.....+...+|+|-|.+-|-+.-+-
T Consensus 93 ~~~ivlTep~~~~psi~~~t~eilFEey~fd~v--~kttaa~lva~~~~~~~ne~~tt~~~~c~lVIDsGysfThIip~v 170 (400)
T KOG0680|consen 93 DHNIVLTEPCMTFPSIQEHTDEILFEEYQFDAV--LKTTAAVLVAFTKYVRNNEDSTTTSSECCLVIDSGYSFTHIIPVV 170 (400)
T ss_pred cceEEEecccccccchhhhHHHHHHHHhccceE--eecCHHHhcchhhhccCCccccccccceEEEEeCCCceEEEehhh
Confidence 457899999765544333 33334455666543 333333333333 221111123467999999999977654332
Q ss_pred eeCCeEEEEEEeCCCCCchhhHHHHHHHHHH
Q 004211 214 YENGHMKILSHAFDESLGGRDFDEVLSSYFA 244 (768)
Q Consensus 214 ~~~~~~~vl~~~~~~~lGG~~~d~~l~~~l~ 244 (768)
.|.....+.. -..+||..++..|.+.+.
T Consensus 171 --~g~~~~qaV~-RiDvGGK~LTn~LKE~iS 198 (400)
T KOG0680|consen 171 --KGIPYYQAVK-RIDVGGKALTNLLKETIS 198 (400)
T ss_pred --cCcchhhceE-EeecchHHHHHHHHHHhh
Confidence 2222122222 457999999999988764
No 80
>PRK00047 glpK glycerol kinase; Provisional
Probab=95.57 E-value=0.028 Score=64.29 Aligned_cols=52 Identities=12% Similarity=0.183 Sum_probs=44.4
Q ss_pred CcCEEEEecCCCChHHHHHHHHhhcCCCCCCcCCchhHHHhhHHHHhhHhcCC
Q 004211 332 KIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQCAMLSPQ 384 (768)
Q Consensus 332 ~i~~V~LvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~GAa~~a~~ls~~ 384 (768)
.++.|.++||+++++.+.+++.+.||.++.... ..|+.|+|||+.|+.-.+.
T Consensus 403 ~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~-~~e~~a~GaA~~A~~~~G~ 454 (498)
T PRK00047 403 RLKELRVDGGAVANNFLMQFQADILGVPVERPV-VAETTALGAAYLAGLAVGF 454 (498)
T ss_pred CCceEEEecCcccCHHHHHHHHHhhCCeeEecC-cccchHHHHHHHHhhhcCc
Confidence 378899999999999999999999999885544 5578899999999866554
No 81
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=95.50 E-value=0.14 Score=57.05 Aligned_cols=53 Identities=19% Similarity=0.271 Sum_probs=48.9
Q ss_pred CCcCEEEEecCCCChHHHHHHHHhhcCCCCCCcCCchhHHHhhHHHHhhHhcCC
Q 004211 331 EKIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQCAMLSPQ 384 (768)
Q Consensus 331 ~~i~~V~LvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~GAa~~a~~ls~~ 384 (768)
..|+.+.+.||.|+.|.+-+.+.+.+|.++.++.+.+. ++.|||+.|+..++.
T Consensus 413 ~~i~~L~~~GG~s~N~ll~Q~~ADi~g~pv~~p~~~e~-~~~GaA~l~~~a~~~ 465 (516)
T KOG2517|consen 413 HPISTLRVCGGLSKNPLLMQLQADILGLPVVRPQDVEA-VALGAAMLAGAASGK 465 (516)
T ss_pred CCcceeeeccccccCHHHHHHHHHHhCCccccccchhH-HHHHHHHHHHhhcCC
Confidence 46888999999999999999999999999999999887 999999999988875
No 82
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=95.47 E-value=0.034 Score=63.42 Aligned_cols=52 Identities=29% Similarity=0.413 Sum_probs=45.0
Q ss_pred CcCEEEEecCCCChHHHHHHHHhhcCCCCCCcCCchhHHHhhHHHHhhHhcCC
Q 004211 332 KIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQCAMLSPQ 384 (768)
Q Consensus 332 ~i~~V~LvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~GAa~~a~~ls~~ 384 (768)
.++.|.++||+++.+.+.+++.+.||.++.... ..++.++|||+.|+.-.+.
T Consensus 390 ~~~~i~~~GG~s~s~~~~Q~~Adv~g~pv~~~~-~~e~~a~GaA~~a~~~~g~ 441 (481)
T TIGR01312 390 PIQSIRLIGGGAKSPAWRQMLADIFGTPVDVPE-GEEGPALGAAILAAWALGE 441 (481)
T ss_pred CcceEEEeccccCCHHHHHHHHHHhCCceeecC-CCcchHHHHHHHHHHhcCC
Confidence 478899999999999999999999998886554 6678899999999876654
No 83
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=95.45 E-value=0.028 Score=64.19 Aligned_cols=52 Identities=13% Similarity=0.164 Sum_probs=44.5
Q ss_pred CcCEEEEecCCCChHHHHHHHHhhcCCCCCCcCCchhHHHhhHHHHhhHhcCC
Q 004211 332 KIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQCAMLSPQ 384 (768)
Q Consensus 332 ~i~~V~LvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~GAa~~a~~ls~~ 384 (768)
.++.|.++||+++++.+.+++.+.||.++... +..|+.|+|||+.|+.-.+.
T Consensus 399 ~~~~i~~~GGga~s~~w~Qi~ADv~g~pv~~~-~~~e~~alGaA~~a~~~~G~ 450 (493)
T TIGR01311 399 EITKLRVDGGMTNNNLLMQFQADILGVPVVRP-KVTETTALGAAYAAGLAVGY 450 (493)
T ss_pred CCceEEEecccccCHHHHHHHHHhcCCeeEec-CCCcchHHHHHHHHHhhcCc
Confidence 47889999999999999999999999988654 44678899999999866554
No 84
>PLN02295 glycerol kinase
Probab=95.36 E-value=0.056 Score=62.04 Aligned_cols=52 Identities=13% Similarity=0.144 Sum_probs=44.4
Q ss_pred CcCEEEEecCCCChHHHHHHHHhhcCCCCCCcCCchhHHHhhHHHHhhHhcCC
Q 004211 332 KIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQCAMLSPQ 384 (768)
Q Consensus 332 ~i~~V~LvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~GAa~~a~~ls~~ 384 (768)
.++.|.++||++++|.+.+++.+.||.++... +..|+.|+|||+.|+.-.+.
T Consensus 412 ~~~~i~~~GGga~s~~w~Qi~ADv~g~pV~~~-~~~e~~alGaA~~A~~~~G~ 463 (512)
T PLN02295 412 GLFLLRVDGGATANNLLMQIQADLLGSPVVRP-ADIETTALGAAYAAGLAVGL 463 (512)
T ss_pred CcceEEEeccchhCHHHHHHHHHhcCCceEec-CccccHHHHHHHHHHhhcCc
Confidence 47889999999999999999999999988544 44678899999999866654
No 85
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=95.35 E-value=0.18 Score=52.30 Aligned_cols=45 Identities=18% Similarity=0.142 Sum_probs=38.7
Q ss_pred CcCEEEEecC-CCChHHHHHHHHhhcC---CCCCCcCCchhHHHhhHHH
Q 004211 332 KIHSVELVGS-GSRIPAISRMLNSLFN---REPGRTINASECVARGCAL 376 (768)
Q Consensus 332 ~i~~V~LvGG-~srip~v~~~l~~~fg---~~v~~~~n~~eava~GAa~ 376 (768)
.+..|+++|| .+..|.+++.+...+. .+...+.|....+|+||++
T Consensus 230 ~~~~IvF~Gg~L~~~~~l~~~~~~~~~~~~~~~ifp~h~~y~gAlGAaL 278 (279)
T TIGR00555 230 NIDRIVFIGSFLRNNQLLMKVLSYATNFWSKKALFLEHEGYSGAIGALL 278 (279)
T ss_pred CCCeEEEECCcccCCHHHHHHHHHHHhhcCceEEEECCcchHHHhhhcc
Confidence 5778999999 6779999999998874 5677888999999999985
No 86
>PRK04123 ribulokinase; Provisional
Probab=95.30 E-value=0.036 Score=64.30 Aligned_cols=78 Identities=17% Similarity=0.298 Sum_probs=55.1
Q ss_pred cHHHHHHHHHHHHHHHHHHH---HHHHHhCCCCCCCcCEEEEecCC-CChHHHHHHHHhhcCCCCCCcCCchhHHHhhHH
Q 004211 300 RREEFEKLSSSLLERMRIPC---QKALAGSGLNVEKIHSVELVGSG-SRIPAISRMLNSLFNREPGRTINASECVARGCA 375 (768)
Q Consensus 300 tr~~fe~~~~~~~~~i~~~i---~~~l~~~~~~~~~i~~V~LvGG~-srip~v~~~l~~~fg~~v~~~~n~~eava~GAa 375 (768)
+|.++ ++.+++.+.-.+ -+.|++.+. .++.|.++||+ ++.+.+.+++.+.||.+|.... ..|+.|+|||
T Consensus 409 ~~~~l---~RAvlEgia~~~~~~~e~l~~~g~---~~~~i~~~GGg~s~s~~w~Qi~ADv~g~pV~~~~-~~e~~alGaA 481 (548)
T PRK04123 409 DAPDI---YRALIEATAFGTRAIMECFEDQGV---PVEEVIAAGGIARKNPVLMQIYADVLNRPIQVVA-SDQCPALGAA 481 (548)
T ss_pred CHHHH---HHHHHHHHHHHHHHHHHHHHHcCC---CcceEEEeCCCcccCHHHHHHHHHhcCCceEecC-ccccchHHHH
Confidence 55554 444444444333 333444443 47889999999 9999999999999998885554 4678899999
Q ss_pred HHhhHhcCC
Q 004211 376 LQCAMLSPQ 384 (768)
Q Consensus 376 ~~a~~ls~~ 384 (768)
+.|+.-.+.
T Consensus 482 ~lA~~~~G~ 490 (548)
T PRK04123 482 IFAAVAAGA 490 (548)
T ss_pred HHHHHHhcc
Confidence 999865543
No 87
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=95.27 E-value=0.067 Score=60.48 Aligned_cols=83 Identities=16% Similarity=0.054 Sum_probs=56.7
Q ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCCCcCEEEEecCCCChHHHHHHHHhhcCCCCCCcCCchhHHHhhHHH
Q 004211 298 FIRREEFEKLSSSLLERMRIPCQKALAGS-GLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCAL 376 (768)
Q Consensus 298 ~itr~~fe~~~~~~~~~i~~~i~~~l~~~-~~~~~~i~~V~LvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~GAa~ 376 (768)
.-+|.++-..+-+-+.-....+-+.+++. +. .++.|.++||+++.+.+.+.+.+.+|.++... . .|+.|+|||+
T Consensus 355 ~~~~~~l~RAv~Egva~~~r~~~e~l~~~~~~---~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~-~-~e~~a~GaA~ 429 (454)
T TIGR02627 355 PESDAELARCIFDSLALLYRQVLLELAELRGK---PISQLHIVGGGSQNAFLNQLCADACGIRVIAG-P-VEASTLGNIG 429 (454)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCC---CcCEEEEECChhhhHHHHHHHHHHhCCceEcC-C-chHHHHHHHH
Confidence 33666654443333322223333334432 33 47889999999999999999999999988543 3 6789999999
Q ss_pred HhhHhcCCc
Q 004211 377 QCAMLSPQY 385 (768)
Q Consensus 377 ~a~~ls~~~ 385 (768)
.|+.-.+.+
T Consensus 430 ~a~~~~G~~ 438 (454)
T TIGR02627 430 VQLMALDEI 438 (454)
T ss_pred HHHHhcCCc
Confidence 998766543
No 88
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=95.23 E-value=0.044 Score=62.83 Aligned_cols=51 Identities=14% Similarity=0.177 Sum_probs=44.0
Q ss_pred cCEEEEecCCCChHHHHHHHHhhcCCCCCCcCCchhHHHhhHHHHhhHhcCC
Q 004211 333 IHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQCAMLSPQ 384 (768)
Q Consensus 333 i~~V~LvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~GAa~~a~~ls~~ 384 (768)
++.|.++||+++++.+.+++.+.||.++.... ..|+.++|||+.|+.-.+.
T Consensus 407 ~~~i~~~GG~a~s~~w~Qi~Adv~g~pV~~~~-~~e~~alGaAl~aa~a~G~ 457 (504)
T PTZ00294 407 LNSLRVDGGLTKNKLLMQFQADILGKDIVVPE-MAETTALGAALLAGLAVGV 457 (504)
T ss_pred cceEEEecccccCHHHHHHHHHHhCCceEecC-cccchHHHHHHHHHhhcCc
Confidence 78899999999999999999999999886555 5568899999999866554
No 89
>PRK10640 rhaB rhamnulokinase; Provisional
Probab=95.13 E-value=0.081 Score=60.00 Aligned_cols=81 Identities=14% Similarity=0.071 Sum_probs=55.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCCCcCEEEEecCCCChHHHHHHHHhhcCCCCCCcCCchhHHHhhHHHHh
Q 004211 300 RREEFEKLSSSLLERMRIPCQKALAGS-GLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQC 378 (768)
Q Consensus 300 tr~~fe~~~~~~~~~i~~~i~~~l~~~-~~~~~~i~~V~LvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~GAa~~a 378 (768)
+|.+|-..+-+-+.--...+-+.|++. +. .++.|.++||+++.+.+.+++.+.+|.++.... .++.++|||+.|
T Consensus 345 ~~~~l~RAvlEgva~~~r~~l~~l~~~~g~---~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~--~ea~alGaa~~a 419 (471)
T PRK10640 345 SDAELARCIFDSLALLYADVLHELAQLRGE---PFSQLHIVGGGCQNALLNQLCADACGIRVIAGP--VEASTLGNIGIQ 419 (471)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---CcceEEEECChhhhHHHHHHHHHHhCCCeeeCC--hhHHHHHHHHHH
Confidence 555554444333322223333334432 32 478899999999999999999999999885543 378899999999
Q ss_pred hHhcCCc
Q 004211 379 AMLSPQY 385 (768)
Q Consensus 379 ~~ls~~~ 385 (768)
+.-.+.+
T Consensus 420 ~~a~G~~ 426 (471)
T PRK10640 420 LMTLDEL 426 (471)
T ss_pred HHHcCCc
Confidence 8766543
No 90
>PRK09604 UGMP family protein; Validated
Probab=95.04 E-value=6.2 Score=42.48 Aligned_cols=60 Identities=13% Similarity=0.061 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhCCCCCCCcCEEEEecCCCChHHHHHHHHhhc---CCCCCCcC---CchhHHHhhHHHHhh
Q 004211 315 MRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLF---NREPGRTI---NASECVARGCALQCA 379 (768)
Q Consensus 315 i~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~f---g~~v~~~~---n~~eava~GAa~~a~ 379 (768)
+.+.++.+++.. +++.|+|.||.+....+++.|.+.+ |..+..+. -.|.++++|+|=+-.
T Consensus 242 l~~~~~~~~~~~-----~~~~lvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~~p~~D~gisIg~ag~~~ 307 (332)
T PRK09604 242 LVIKTKRALKQT-----GVKTLVVAGGVAANSGLRERLAELAKKRGIEVFIPPLKLCTDNAAMIAAAGYER 307 (332)
T ss_pred HHHHHHHHHHHh-----CCCeEEEcChHHHHHHHHHHHHHHHHHCCCEEECCCCCCCcHHHHHHHHHHHHH
Confidence 334444555443 4677999999999999999999888 54444433 458999999984443
No 91
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=95.00 E-value=1.6 Score=46.03 Aligned_cols=48 Identities=15% Similarity=0.041 Sum_probs=30.6
Q ss_pred CcCEEEEecCCCChHHHHHHHHhhcC-------CCCCCcCCchhHHHhhHHHHhh
Q 004211 332 KIHSVELVGSGSRIPAISRMLNSLFN-------REPGRTINASECVARGCALQCA 379 (768)
Q Consensus 332 ~i~~V~LvGG~srip~v~~~l~~~fg-------~~v~~~~n~~eava~GAa~~a~ 379 (768)
+++.|+|-||.+..+.+.+.+++.+. .++..+...+.+.++|||.++.
T Consensus 233 dpe~IvlgG~~~~~~~~~~~i~~~l~~~~~~~~~~i~~s~~~~~~~~~GAa~~~~ 287 (291)
T PRK05082 233 DCQCVVLGGSVGLAEGYLELVQAYLAQEPAIYHVPLLAAHYRHDAGLLGAALWAQ 287 (291)
T ss_pred CCCEEEEcCccccHHHHHHHHHHHHHhcccccCCeEEECccCCchhhhhHHHHhc
Confidence 46778888887766655555655542 1223333457788999998763
No 92
>KOG2531 consensus Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=94.99 E-value=0.069 Score=57.34 Aligned_cols=55 Identities=20% Similarity=0.257 Sum_probs=47.8
Q ss_pred hCCCCCCCcCEEEEecCCCChHHHHHHHHhhcCCCCCCcCCchhHHHhhHHHHhhH
Q 004211 325 GSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQCAM 380 (768)
Q Consensus 325 ~~~~~~~~i~~V~LvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~GAa~~a~~ 380 (768)
..|........|+.+||.||...|-+.|.+.||.++..- ...+++|.|+|+.|+.
T Consensus 435 ~lg~~~~~~~rilvtGGAS~N~~Ilq~iadVf~apVy~~-~~~~sa~lG~A~ra~y 489 (545)
T KOG2531|consen 435 PLGFKSNPPTRILVTGGASRNEAILQIIADVFGAPVYTI-EGPNSAALGGAYRAAY 489 (545)
T ss_pred cccCCCCCCceEEEecCccccHHHHHHHHHHhCCCeEee-cCCchhhHHHHHHHHH
Confidence 346666678999999999999999999999999988665 7888999999999864
No 93
>PRK10854 exopolyphosphatase; Provisional
Probab=94.93 E-value=0.65 Score=53.19 Aligned_cols=77 Identities=13% Similarity=0.180 Sum_probs=46.7
Q ss_pred HHHHHHHHHHcCCCceeeccchHHHHHHh-hhcccCCCCCCCcEEEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCCch
Q 004211 154 RRAYLDAATIAGLKPLRLMHDCTATALGY-GIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGG 232 (768)
Q Consensus 154 r~~l~~Aa~~AGl~~~~li~Ep~Aaal~y-~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG 232 (768)
...+.++-...|+++ .+|+...=|.+.| |.... ++ .....+|+|+|||+|.++++.- +.+.. ..+ ..+|.
T Consensus 99 ~~fl~~i~~~tGl~i-~vIsG~EEA~l~~~gv~~~-l~--~~~~~lvvDIGGGStEl~~~~~--~~~~~-~~S--~~lG~ 169 (513)
T PRK10854 99 TDFLKRAEKVIPYPI-EIISGNEEARLIFMGVEHT-QP--EKGRKLVIDIGGGSTELVIGEN--FEPIL-VES--RRMGC 169 (513)
T ss_pred HHHHHHHHHHHCCCe-EEeCHHHHHHHHHhhhhcc-cC--CCCCeEEEEeCCCeEEEEEecC--CCeeE-eEE--Eecce
Confidence 344555556679998 6666555555554 54432 22 2356899999999999999763 33221 112 26777
Q ss_pred hhHHHHH
Q 004211 233 RDFDEVL 239 (768)
Q Consensus 233 ~~~d~~l 239 (768)
-.+.+.+
T Consensus 170 vrl~e~f 176 (513)
T PRK10854 170 VSFAQLY 176 (513)
T ss_pred eeHHhhh
Confidence 6665543
No 94
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=94.91 E-value=0.26 Score=51.99 Aligned_cols=104 Identities=19% Similarity=0.250 Sum_probs=68.8
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHhHhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 004211 604 SFATESEREGISRNLRDTEEWLYEDGDDESENVYAERLEDLKKLVDPIEGRYKDEEARAQATGALLKCAMDYRKVVEAHS 683 (768)
Q Consensus 604 ~~~t~~e~~~l~~~l~~~~~WL~~~g~~a~~~~~~~kl~~L~~~~~pi~~R~~e~~~rp~a~~~l~~~l~~~~~~~~~~~ 683 (768)
...|++ .|..++++++.+-.++. + +..|.+.+.+...-.=.|++.+..-.+.. ..
T Consensus 538 ~rLt~E---dIerMv~eAekFAeeDk----------~----------~KekieaRN~LE~YayslKnqi~dkekLg--~K 592 (663)
T KOG0100|consen 538 GRLTPE---DIERMVNEAEKFAEEDK----------K----------LKEKIEARNELESYAYSLKNQIGDKEKLG--GK 592 (663)
T ss_pred CCCCHH---HHHHHHHHHHHHhhhhH----------H----------HHHHHHhHHHHHHHHHHhhhccCchhHhc--cc
Confidence 455664 45566777888766542 1 11222222222223334444455444455 56
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccHHHHHHHHHHHHHHhhhhc-CCC
Q 004211 684 LPSKVRDAVIDECSKAEEWLREKVTQQDSLPKDADPILWSTEIKRKSEALDLTCKCIM-RSN 744 (768)
Q Consensus 684 ~~~~e~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~~~i~-kpk 744 (768)
+++++++.+.+.+++...||++. +--..+|...|.++|+..|+||. |-.
T Consensus 593 l~~edKe~~e~av~e~~eWL~~n------------~~a~~Ee~~ek~kele~vv~PiisklY 642 (663)
T KOG0100|consen 593 LSDEDKETIEDAVEEALEWLESN------------QDASKEEFKEKKKELEAVVQPIISKLY 642 (663)
T ss_pred CChhHHHHHHHHHHHHHHHHhhc------------ccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999883 33345899999999999999998 543
No 95
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=94.79 E-value=0.096 Score=60.30 Aligned_cols=52 Identities=21% Similarity=0.230 Sum_probs=44.4
Q ss_pred CcCEEEEecCCCChHHHHHHHHhhcCCCCCCcCCchhHHHhhHHHHhhHhcCC
Q 004211 332 KIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQCAMLSPQ 384 (768)
Q Consensus 332 ~i~~V~LvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~GAa~~a~~ls~~ 384 (768)
.++.|.++||+++++.+.+++.+.||.++....+ .++.++|||+.|+.-.+.
T Consensus 409 ~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~~-~e~~alGaA~lA~~~~G~ 460 (520)
T PRK10939 409 FPSSLVFAGGGSKGKLWSQILADVTGLPVKVPVV-KEATALGCAIAAGVGAGI 460 (520)
T ss_pred CCcEEEEeCCcccCHHHHHHHHHhcCCeeEEecc-cCchHHHHHHHHHHHhCC
Confidence 4788999999999999999999999998866654 467899999999866553
No 96
>PRK09698 D-allose kinase; Provisional
Probab=94.57 E-value=5.7 Score=42.09 Aligned_cols=43 Identities=12% Similarity=-0.045 Sum_probs=28.5
Q ss_pred cCCCceeeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEE
Q 004211 164 AGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVA 212 (768)
Q Consensus 164 AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~ 212 (768)
.|++ +.+.|+..|+|++-..... ....+++++.+|.| .-.+++
T Consensus 104 ~~~p-v~v~NDa~aaa~~E~~~~~----~~~~~~~~v~lgtG-IG~giv 146 (302)
T PRK09698 104 LNCP-VFFSRDVNLQLLWDVKENN----LTQQLVLGAYLGTG-MGFAVW 146 (302)
T ss_pred hCCC-EEEcchHhHHHHHHHHhcC----CCCceEEEEEecCc-eEEEEE
Confidence 4776 5899999999886543221 23457888888876 444444
No 97
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=94.53 E-value=0.72 Score=52.57 Aligned_cols=78 Identities=23% Similarity=0.294 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHcCCCceeeccchHHHHHHh-hhcccCCCCCCCcEEEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCCc
Q 004211 153 QRRAYLDAATIAGLKPLRLMHDCTATALGY-GIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLG 231 (768)
Q Consensus 153 qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y-~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lG 231 (768)
....+.++-+..|+++ .+|+...=|.+.| |.... ++ .....+|+|+|||+|.++++. ++.+ ... ....+|
T Consensus 93 ~~~fl~~i~~~tGl~i-evIsG~eEA~l~~~gv~~~-l~--~~~~~lviDIGGGStEl~~~~--~~~~--~~~-~Sl~lG 163 (496)
T PRK11031 93 ADEFLAKAQEILGCPV-QVISGEEEARLIYQGVAHT-TG--GADQRLVVDIGGASTELVTGT--GAQA--TSL-FSLSMG 163 (496)
T ss_pred HHHHHHHHHHHHCCCe-EEeCHHHHHHHHHHhhhhc-cC--CCCCEEEEEecCCeeeEEEec--CCce--eee-eEEecc
Confidence 3445556667779998 5555555555444 55443 32 234589999999999999875 3332 111 246788
Q ss_pred hhhHHHHH
Q 004211 232 GRDFDEVL 239 (768)
Q Consensus 232 G~~~d~~l 239 (768)
.-.+.+.+
T Consensus 164 ~vrl~e~f 171 (496)
T PRK11031 164 CVTWLERY 171 (496)
T ss_pred chHHHHHh
Confidence 87765544
No 98
>PRK09557 fructokinase; Reviewed
Probab=94.50 E-value=1.9 Score=45.79 Aligned_cols=44 Identities=25% Similarity=0.242 Sum_probs=29.1
Q ss_pred cCCCceeeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEE
Q 004211 164 AGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVA 212 (768)
Q Consensus 164 AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~ 212 (768)
.|++ +.+.|+..|+|++-.+.... ...++++++.+|.| +-.+++
T Consensus 96 ~~~p-v~~~NDa~aaA~aE~~~g~~---~~~~~~~~l~igtG-iG~giv 139 (301)
T PRK09557 96 LNRE-VRLANDANCLAVSEAVDGAA---AGKQTVFAVIIGTG-CGAGVA 139 (301)
T ss_pred HCCC-EEEccchhHHHHHHHHhccc---CCCCcEEEEEEccc-eEEEEE
Confidence 3775 57999999999876543221 33467888888855 444444
No 99
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=94.49 E-value=0.19 Score=50.04 Aligned_cols=73 Identities=16% Similarity=0.227 Sum_probs=40.3
Q ss_pred HHHHHHHHHhhccCCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCceeeccchHHHHHHhhhcccCCCCCCCcEEEEEEe
Q 004211 123 LSNLKQITEKNIKIPISNCVIGVPCYLTDVQRRAYLDAATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDI 202 (768)
Q Consensus 123 L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~ 202 (768)
..++.+.++..++.++ .++++-..|... +++++--. .||| +|....+-+....++..+++|+
T Consensus 76 Ve~Ii~~v~~Af~~pv--~~v~~~G~~~ss--Ea~~~~~~-------------vAAa-NW~Ata~~~~e~~~dsci~VD~ 137 (330)
T COG1548 76 VEDIIDTVEKAFNCPV--YVVDVNGNFLSS--EALKNPRE-------------VAAA-NWVATARFLAEEIKDSCILVDM 137 (330)
T ss_pred HHHHHHHHHHhcCCce--EEEeccCcCcCh--hHhcCHHH-------------HHHh-hhHHHHHHHHHhcCCceEEEec
Confidence 3445556666666554 788888888764 22221111 1111 1111111111234677999999
Q ss_pred CCceEEEEEEE
Q 004211 203 GHCDTQVCVAS 213 (768)
Q Consensus 203 GggT~dvsv~~ 213 (768)
|+.|+|+--+.
T Consensus 138 GSTTtDIIPi~ 148 (330)
T COG1548 138 GSTTTDIIPIK 148 (330)
T ss_pred CCcccceEeec
Confidence 99999987654
No 100
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=94.10 E-value=7.9 Score=41.03 Aligned_cols=45 Identities=18% Similarity=0.050 Sum_probs=29.7
Q ss_pred HcCCCceeeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEE
Q 004211 163 IAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVA 212 (768)
Q Consensus 163 ~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~ 212 (768)
..|++ +.+.|+..|+|++-.+.... ....+++++.+|.| +-.+++
T Consensus 95 ~~~~p-V~ieNDa~aaalaE~~~g~~---~~~~~~~~l~~gtG-iG~giv 139 (303)
T PRK13310 95 RLGRD-VRLDNDANCFALSEAWDDEF---TQYPLVMGLILGTG-VGGGLV 139 (303)
T ss_pred HHCCC-eEEeccHhHHHHHHhhhccc---cCCCcEEEEEecCc-eEEEEE
Confidence 34776 57999999999875443221 23467889889876 344444
No 101
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=94.07 E-value=0.4 Score=52.72 Aligned_cols=99 Identities=15% Similarity=0.244 Sum_probs=62.4
Q ss_pred CeEEEEeCCCCCHHHHHHHHHH-HHHcCCCceeeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEeeCC
Q 004211 139 SNCVIGVPCYLTDVQRRAYLDA-ATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENG 217 (768)
Q Consensus 139 ~~~VitVPa~~~~~qr~~l~~A-a~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~ 217 (768)
..+++|=+..-....|+.|.+. .+.-|++.+.+=-+.. |.+... .........||+++|..+|-|-.|- +|
T Consensus 117 hPIilTE~laNP~~~R~~m~elLFE~YgvP~V~yGIDsl-----fS~~hN-~~~~~~~~~liis~g~~~T~vipvl--dG 188 (645)
T KOG0681|consen 117 HPIILTEALANPVYSRSEMVELLFETYGVPKVAYGIDSL-----FSFYHN-YGKSSNKSGLIISMGHSATHVIPVL--DG 188 (645)
T ss_pred CCeeeehhccChHHHHHHHHHHHHHHcCCcceeechhhH-----HHHhhc-cCcccCcceEEEecCCCcceeEEEe--cC
Confidence 4577887777667788887776 4666887654421111 111111 1112334789999999999876654 44
Q ss_pred eEEEEEEeCCCCCchhhHHHHHHHHHHHH
Q 004211 218 HMKILSHAFDESLGGRDFDEVLSSYFAAQ 246 (768)
Q Consensus 218 ~~~vl~~~~~~~lGG~~~d~~l~~~l~~~ 246 (768)
.. ++....-.++||.....-|.+.+..+
T Consensus 189 ~~-il~~~kRiN~GG~qa~dYL~~Lmq~K 216 (645)
T KOG0681|consen 189 RL-ILKDVKRINWGGYQAGDYLSRLMQLK 216 (645)
T ss_pred ch-hhhcceeeccCcchHHHHHHHHHhcc
Confidence 43 33444568899999888777777654
No 102
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=93.49 E-value=0.57 Score=52.75 Aligned_cols=57 Identities=16% Similarity=0.145 Sum_probs=40.0
Q ss_pred HHHHHHHHHHcCCCceeeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEE
Q 004211 154 RRAYLDAATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVAS 213 (768)
Q Consensus 154 r~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~ 213 (768)
-+.+..+-+..|+++-.+--|-+|--..+|+-.. ++ .....+|+|+|||+|.+++..
T Consensus 91 ~eFl~rv~~~~G~~ievIsGeeEArl~~lGv~~~-~~--~~~~~lv~DIGGGStEl~~g~ 147 (492)
T COG0248 91 DEFLARVEKELGLPIEVISGEEEARLIYLGVAST-LP--RKGDGLVIDIGGGSTELVLGD 147 (492)
T ss_pred HHHHHHHHHHhCCceEEeccHHHHHHHHHHHHhc-CC--CCCCEEEEEecCCeEEEEEec
Confidence 4567788888899984444455554444455443 22 167799999999999999986
No 103
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=93.42 E-value=0.16 Score=53.44 Aligned_cols=64 Identities=16% Similarity=0.089 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCcCEEEEecCCCChHHHHHHHHhhcCC-CCCCcCCchhHHHhhHHH
Q 004211 310 SLLERMRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNR-EPGRTINASECVARGCAL 376 (768)
Q Consensus 310 ~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~fg~-~v~~~~n~~eava~GAa~ 376 (768)
-...++.+.|+++....+..+.+ -.++.+||++ |++-..|.+.+|. .+..+..+.-+.|+||++
T Consensus 219 ~~~~~m~~~i~~~~~~~g~~~~~-~~lv~~GG~g--~~~~~~la~~lg~~~v~~p~~~~v~~A~Ga~~ 283 (290)
T PF01968_consen 219 IANENMADAIREVSVERGYDPRD-FPLVAFGGAG--PLHAPELAEELGIPRVVPPHYAGVANAIGAAV 283 (290)
T ss_dssp HHHHHHHHHHHHHHHHHT--EEE-E-------------------------------------------
T ss_pred HHHHHHHHHHHHHHHhhCCCccc-cccccccccc--cccccccccccccccccccccccccccccccc
Confidence 34444555555554444554433 2344556655 7788888888885 455566678899999975
No 104
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=93.19 E-value=5 Score=42.77 Aligned_cols=38 Identities=26% Similarity=0.405 Sum_probs=26.7
Q ss_pred cCCCceeeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCc
Q 004211 164 AGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHC 205 (768)
Q Consensus 164 AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~Ggg 205 (768)
.|++ +.+-|+..|+|++-.+.... ....+++++-+|-|
T Consensus 106 ~~~P-v~veNDan~aalaE~~~g~~---~~~~~~~~i~~gtG 143 (314)
T COG1940 106 LGLP-VFVENDANAAALAEAWFGAG---RGIDDVVYITLGTG 143 (314)
T ss_pred HCCC-EEEecHHHHHHHHHHHhCCC---CCCCCEEEEEEccc
Confidence 3555 48999999999987765431 33457888888766
No 105
>PF13941 MutL: MutL protein
Probab=92.79 E-value=1.6 Score=48.53 Aligned_cols=42 Identities=24% Similarity=0.337 Sum_probs=29.9
Q ss_pred EEEEEcCccceEEEEEE--cCCceEEEeCCCCCccceEEEEeeCCceeecH
Q 004211 3 VVGFDIGNENCVIAAVK--QGGMLDVLLNDESKRETPTVVSFSEKQRFLGS 51 (768)
Q Consensus 3 viGID~GTt~s~va~~~--~g~~~~ii~n~~~~r~~Ps~V~~~~~~~~~G~ 51 (768)
++.+|||||||++..++ .+. ..++-. -..||.| .++....|-
T Consensus 2 ~L~~DiGST~Tk~~l~d~~~~~-~~~ig~----a~apTTv--~~~Dv~~G~ 45 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLFDLVDGE-PRLIGQ----AEAPTTV--EPGDVTIGL 45 (457)
T ss_pred EEEEEeCCcceEEeEEeccCCc-cEEEEE----EeCCCCc--CcccHHHHH
Confidence 68999999999999998 666 666633 3568777 223455553
No 106
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=92.46 E-value=4.1 Score=43.54 Aligned_cols=71 Identities=20% Similarity=0.214 Sum_probs=43.3
Q ss_pred CCCeEEEEeCCCCCHHH------------HHHHHHHH-HHcCCCceeeccchHHHHHHhhhcccCCCCCCCcEEEEEEeC
Q 004211 137 PISNCVIGVPCYLTDVQ------------RRAYLDAA-TIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIG 203 (768)
Q Consensus 137 ~~~~~VitVPa~~~~~q------------r~~l~~Aa-~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~G 203 (768)
.+..+.|++|...+... .-.+.+.. +..|++ +.+.|+..|+|++-.+.... ....+++++.+|
T Consensus 57 ~i~gIgva~pG~vd~~~g~~~~~~~~~w~~~~l~~~l~~~~~~p-v~v~NDa~~~alaE~~~g~~---~~~~~~~~v~ig 132 (318)
T TIGR00744 57 EIVAIGIGAPGPVNRQRGTVYFAVNLDWKQEPLKEKVEARVGLP-VVVENDANAAALGEYKKGAG---KGARDVICITLG 132 (318)
T ss_pred ceEEEEEeccccccCCCCEEEecCCCCCCCCCHHHHHHHHHCCC-EEEechHHHHHHHHHHhccc---CCCCcEEEEEeC
Confidence 45667788886554211 11233332 334775 57999999999876543321 234678999999
Q ss_pred CceEEEEEE
Q 004211 204 HCDTQVCVA 212 (768)
Q Consensus 204 ggT~dvsv~ 212 (768)
.|- -.+++
T Consensus 133 tGi-G~giv 140 (318)
T TIGR00744 133 TGL-GGGII 140 (318)
T ss_pred Ccc-EEEEE
Confidence 875 55554
No 107
>PTZ00297 pantothenate kinase; Provisional
Probab=92.46 E-value=13 Score=47.93 Aligned_cols=73 Identities=16% Similarity=0.081 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEecC-CCChHHHHHHHHhhc-----C-CCCCCcCCchhHHHhhHHHH
Q 004211 305 EKLSSSLLERMRIPCQKALAGSGLNVEKIHSVELVGS-GSRIPAISRMLNSLF-----N-REPGRTINASECVARGCALQ 377 (768)
Q Consensus 305 e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG-~srip~v~~~l~~~f-----g-~~v~~~~n~~eava~GAa~~ 377 (768)
+++++.++.-|..-|-+.--- .-...+++.|+++|+ -...|...+.|..++ | ......-+.....|+||++.
T Consensus 1365 ~Di~~sll~~is~nIgqia~l-~a~~~~~~~i~f~G~~i~~~~~~~~~l~~a~~~ws~g~~~a~fl~hegy~ga~Ga~~~ 1443 (1452)
T PTZ00297 1365 IDIVRSLLNMISSNVTQLAYL-HSRVQGVPNIFFAGGFVRDNPIIWSHISSTMKYWSKGECHAHFLEHDGYLGALGCATL 1443 (1452)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHcCCCEEEEecchhcCCHHHHHHHHHHHHHHcCCCeeEEEecCccccHHhhhhhc
Confidence 445555555554444332111 112236889999999 455888888887665 2 34445557778899999865
Q ss_pred h
Q 004211 378 C 378 (768)
Q Consensus 378 a 378 (768)
.
T Consensus 1444 ~ 1444 (1452)
T PTZ00297 1444 D 1444 (1452)
T ss_pred C
Confidence 3
No 108
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=92.35 E-value=0.44 Score=50.16 Aligned_cols=74 Identities=15% Similarity=0.254 Sum_probs=42.7
Q ss_pred HHHHHHHcCCCceeeccchHHHHHHh-hhcccCCCCCCCcEEEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCCchhhH
Q 004211 157 YLDAATIAGLKPLRLMHDCTATALGY-GIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDF 235 (768)
Q Consensus 157 l~~Aa~~AGl~~~~li~Ep~Aaal~y-~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~ 235 (768)
+...-+..|+++ .+|+...=|.+.| |... .+ ......+++|+|||+|.+++++- +.+ .... ..++|.-.+
T Consensus 77 ~~~i~~~tGi~i-~iIsgeeEa~l~~~gv~~-~l--~~~~~~lviDIGGGStEl~~~~~--~~~--~~~~-Sl~lG~vrl 147 (285)
T PF02541_consen 77 LDRIKKETGIDI-EIISGEEEARLSFLGVLS-SL--PPDKNGLVIDIGGGSTELILFEN--GKV--VFSQ-SLPLGAVRL 147 (285)
T ss_dssp HHHHHHHHSS-E-EEE-HHHHHHHHHHHHHH-HS--TTTSSEEEEEEESSEEEEEEEET--TEE--EEEE-EES--HHHH
T ss_pred HHHHHHHhCCce-EEecHHHHHHHHHHHHHh-hc--cccCCEEEEEECCCceEEEEEEC--Cee--eEee-eeehHHHHH
Confidence 444445679987 5555554444444 4332 22 23567899999999999998763 333 2222 467888877
Q ss_pred HHHH
Q 004211 236 DEVL 239 (768)
Q Consensus 236 d~~l 239 (768)
.+.+
T Consensus 148 ~e~~ 151 (285)
T PF02541_consen 148 TERF 151 (285)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 109
>PTZ00288 glucokinase 1; Provisional
Probab=92.20 E-value=2.4 Score=46.74 Aligned_cols=20 Identities=25% Similarity=0.451 Sum_probs=17.7
Q ss_pred eEEEEEcCccceEEEEEEcC
Q 004211 2 SVVGFDIGNENCVIAAVKQG 21 (768)
Q Consensus 2 ~viGID~GTt~s~va~~~~g 21 (768)
.++|+|+|.|++++++++..
T Consensus 27 ~~~~~DiGgt~~R~~~~~~~ 46 (405)
T PTZ00288 27 IFVGCDVGGTNARVGFAREV 46 (405)
T ss_pred eEEEEEecCCceEEEEEecc
Confidence 58999999999999998754
No 110
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=92.16 E-value=1.7 Score=46.13 Aligned_cols=69 Identities=22% Similarity=0.297 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCcCEEEEecCCCChHHHHHHHHhhcCC----CCCCcCCc----hhHHHhhHHHHhhHhc
Q 004211 311 LLERMRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNR----EPGRTINA----SECVARGCALQCAMLS 382 (768)
Q Consensus 311 ~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~fg~----~v~~~~n~----~eava~GAa~~a~~ls 382 (768)
+++.+.+.|...+.. ..+.+.|+|.|-.+++|-+.+.+++.|+. ++. .+.+ -..+|+|||+.|.-+.
T Consensus 243 ~~E~i~k~V~~l~~~----~~~~~~IilSGr~~~~~~~~~~l~~~l~~~~~~~v~-~l~~~~~~aKeaA~GaAiIA~gla 317 (343)
T PF07318_consen 243 MIESIVKAVASLLAS----VPDPDEIILSGRFSRIPEFRKKLEDRLEDYFPVKVR-KLEGLARKAKEAAQGAAIIANGLA 317 (343)
T ss_pred HHHHHHHHHHHHhcc----cCCCCEEEEeccccccHHHHHHHHHHHHhhccccee-ecccccccchhhhhhHHHHhhhhh
Confidence 344444444444332 23678899999999999998888877741 221 1222 2447999999998776
Q ss_pred CC
Q 004211 383 PQ 384 (768)
Q Consensus 383 ~~ 384 (768)
+.
T Consensus 318 GG 319 (343)
T PF07318_consen 318 GG 319 (343)
T ss_pred cc
Confidence 54
No 111
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=91.87 E-value=2 Score=41.97 Aligned_cols=30 Identities=17% Similarity=0.065 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHcCCCceeeccchHHHHHH
Q 004211 152 VQRRAYLDAATIAGLKPLRLMHDCTATALG 181 (768)
Q Consensus 152 ~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~ 181 (768)
...+.+.++++.|||++..++.+|.|++.+
T Consensus 157 ~~v~n~~~~v~~agl~v~~i~~~~~A~~~a 186 (187)
T smart00842 157 SAIQNLEKCVERAGLEVDGIVLEPLASAEA 186 (187)
T ss_pred HHHHHHHHHHHHcCCchhhEEehhhhhEec
Confidence 456788899999999999999999998753
No 112
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=91.41 E-value=32 Score=39.72 Aligned_cols=63 Identities=16% Similarity=0.067 Sum_probs=43.8
Q ss_pred HHHHHHHHHHhCCCCCCCcCEEEEecCCCChHHHHHHHHhhc---CCCCCCcC---CchhHHHhhHHHHhhHhc
Q 004211 315 MRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLF---NREPGRTI---NASECVARGCALQCAMLS 382 (768)
Q Consensus 315 i~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~f---g~~v~~~~---n~~eava~GAa~~a~~ls 382 (768)
+...+.++++..| ++.|+|+||-+...++++.|.+.+ |.++..+. -.|.++++|++.+....+
T Consensus 233 l~~~~~~~~~~~g-----~~~lvlsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~~~~D~g~~ia~a~~~~~~~ 301 (535)
T PRK09605 233 LTEVTERALAHTG-----KDEVLLVGGVAANNRLREMLKEMCEERGADFYVPEPRFCGDNGAMIAWLGLLMYKA 301 (535)
T ss_pred HHHHHHHHHHHhC-----CCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCccccchHHHHHHHHHHHHHc
Confidence 3344444444433 567999999999999999999665 44444443 468999999887655443
No 113
>COG2192 Predicted carbamoyl transferase, NodU family [Posttranslational modification, protein turnover, chaperones]
Probab=90.51 E-value=35 Score=38.54 Aligned_cols=81 Identities=14% Similarity=0.072 Sum_probs=55.2
Q ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEecCCCChHHHH-HHHHhhcCCCCCCcCC-chhHHHhhHH
Q 004211 298 FIRREEFEKLSSSLLERMRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAIS-RMLNSLFNREPGRTIN-ASECVARGCA 375 (768)
Q Consensus 298 ~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~-~~l~~~fg~~v~~~~n-~~eava~GAa 375 (768)
.....+|-..++..++++.-.+-+.+.+.. ....+.+.||....-..- +.+.+.+...+...+. .|.-.|.|||
T Consensus 255 ~~~~~diAasaQ~~lE~l~l~~~~~~~~~~----g~~~L~~AGGVAlNv~~N~~~l~~~~f~dlfV~Pa~gD~G~AvGAA 330 (555)
T COG2192 255 TERAADIAASAQAYLEELVLEMLRYLREET----GEDNLALAGGVALNVKANGKLLRRGLFEDLFVQPAMGDAGLAVGAA 330 (555)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHh----CccceEEccceeeeeeehHhHhhcccCceeEecCCCCCcchHHHHH
Confidence 344556666667777776666555555432 145699999988776666 6777777766765554 4778999999
Q ss_pred HHhhHhc
Q 004211 376 LQCAMLS 382 (768)
Q Consensus 376 ~~a~~ls 382 (768)
+++...-
T Consensus 331 l~~~~~~ 337 (555)
T COG2192 331 LAVKREL 337 (555)
T ss_pred HHHHHHh
Confidence 9987543
No 114
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=90.42 E-value=2.7 Score=45.51 Aligned_cols=70 Identities=19% Similarity=0.191 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEecCCCChHHHHHHHHhhcCCCCCC----cCCchhHHHhhHHHHhhH
Q 004211 308 SSSLLERMRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPGR----TINASECVARGCALQCAM 380 (768)
Q Consensus 308 ~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~fg~~v~~----~~n~~eava~GAa~~a~~ 380 (768)
+.-+..-+...|.+.+.... ...+.|+++||+++.|++.++|++.++.++.. ..+++.-=|..-|++|..
T Consensus 265 ~aTlt~~TA~sI~~~~~~~~---~~~~~vlv~GGGa~N~~Lm~~L~~~l~~~v~~~~~~G~~~da~EA~aFA~La~~ 338 (365)
T PRK09585 265 QATLTELTAASIARAVRRLP---PGPDELLVCGGGARNPTLMERLAALLPTEVATTDALGIDGDAKEALAFAWLAVR 338 (365)
T ss_pred HHHHHHHHHHHHHHHHHhcc---CCCCEEEEECCCcchHHHHHHHHHhcCCcccCHHHcCCChhHHHHHHHHHHHHH
Confidence 33344444445555554432 23468999999999999999999999633321 134444444555666653
No 115
>PLN02666 5-oxoprolinase
Probab=90.11 E-value=3.1 Score=52.37 Aligned_cols=76 Identities=16% Similarity=0.096 Sum_probs=48.2
Q ss_pred ecHHHHHHHHHHHH-HHHHHHHHHHHHhCCCCCCCcCEEEEecCCCChHHHHHHHHhhcCCC-CCCcCCchhHHHhhHHH
Q 004211 299 IRREEFEKLSSSLL-ERMRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNRE-PGRTINASECVARGCAL 376 (768)
Q Consensus 299 itr~~fe~~~~~~~-~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~fg~~-v~~~~n~~eava~GAa~ 376 (768)
++-++...-+..++ ..+...|+......|..+.+ -.++..||+ =|..--.|.+.+|.+ +..+.++.-.-|+|+++
T Consensus 454 ~~~e~aA~~i~~ia~~~m~~air~i~~~~G~dpr~-~~l~afGGa--gp~ha~~lA~~lgi~~vivP~~~gv~sA~G~~~ 530 (1275)
T PLN02666 454 MSVEEVALGFVRVANEAMCRPIRQLTEMKGYETAN-HALACFGGA--GPQHACAIARALGMSEVFVHRYCGILSAYGMGL 530 (1275)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC-ceEEEecCc--HHHHHHHHHHHcCCCEEEeCCCccHHHHHHHHh
Confidence 34444444333333 34455666666666776644 233444444 467778889999965 77888999999999975
Q ss_pred H
Q 004211 377 Q 377 (768)
Q Consensus 377 ~ 377 (768)
.
T Consensus 531 a 531 (1275)
T PLN02666 531 A 531 (1275)
T ss_pred h
Confidence 3
No 116
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=89.26 E-value=2.9 Score=49.56 Aligned_cols=66 Identities=18% Similarity=0.358 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHh----CCCChhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccHHHHHHHHHHHHHHhhh
Q 004211 664 ATGALLKCAMDYRKVVEA----HSLPSKVRDAVIDECSKAEEWLREKVTQQDSLPKDADPILWSTEIKRKSEALDLTCKC 739 (768)
Q Consensus 664 a~~~l~~~l~~~~~~~~~----~~~~~~e~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~~~ 739 (768)
+.+.+.+.|..++..+.. ..+++++++.+.+.+++++.||++ +..-+.+++..|+++|+..+++
T Consensus 540 akN~lEs~Iy~~r~~L~~~~~~~~~t~ee~~~l~~~l~~~~~wL~~------------~~~~~~~~~~~kl~eL~~~~~p 607 (653)
T PTZ00009 540 AKNGLENYCYSMKNTLQDEKVKGKLSDSDKATIEKAIDEALEWLEK------------NQLAEKEEFEHKQKEVESVCNP 607 (653)
T ss_pred HHhhhHHHHHHHHHHHhhhhhhccCCHHHHHHHHHHHHHHHHHHhc------------CCchhHHHHHHHHHHHHHHHHH
Confidence 333444444444444421 337999999999999999999974 1123558999999999999999
Q ss_pred hc
Q 004211 740 IM 741 (768)
Q Consensus 740 i~ 741 (768)
+.
T Consensus 608 i~ 609 (653)
T PTZ00009 608 IM 609 (653)
T ss_pred HH
Confidence 87
No 117
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=89.13 E-value=2 Score=45.55 Aligned_cols=110 Identities=15% Similarity=0.061 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHhhccCCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCceeeccchHHHHHHhhhcccCCCCCCCcEEEE
Q 004211 120 GMLLSNLKQITEKNIKIPISNCVIGVPCYLTDVQRRAYLDAATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVF 199 (768)
Q Consensus 120 a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv 199 (768)
...|+..++.+..+ +..-..+|-|--..--.+....+...-...|+++ .+++...=|.+.|.--...++. ...++
T Consensus 55 ~~~l~~f~~~~~~~-~v~~i~~vaTsa~R~A~N~~~~~~~i~~~tgi~i-~visg~eEa~l~~~gv~~~~~~---~~~~v 129 (300)
T TIGR03706 55 LEALKRFAELLRGF-PVDEVRAVATAALRDAKNGPEFLREAEAILGLPI-EVISGEEEARLIYLGVAHTLPI---ADGLV 129 (300)
T ss_pred HHHHHHHHHHHHhC-CCCeEEEEEcHHHHcCCCHHHHHHHHHHHHCCCe-EEeChHHHHHHHHHHHHhCCCC---CCcEE
Confidence 34555555555433 3222223222222222222333434445679987 6777776666666322222221 12499
Q ss_pred EEeCCceEEEEEEEeeCCeEEEEEEeCCCCCchhhHHHHH
Q 004211 200 VDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEVL 239 (768)
Q Consensus 200 ~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~d~~l 239 (768)
+|+|||+|.++++. ++.+ .. ....++|...+.+.+
T Consensus 130 ~DiGGGSte~~~~~--~~~~--~~-~~Sl~lG~vrl~e~f 164 (300)
T TIGR03706 130 VDIGGGSTELILGK--DFEP--GE-GVSLPLGCVRLTEQF 164 (300)
T ss_pred EEecCCeEEEEEec--CCCE--eE-EEEEccceEEhHHhh
Confidence 99999999999875 3322 11 124567766665543
No 118
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=89.06 E-value=0.43 Score=52.48 Aligned_cols=48 Identities=19% Similarity=0.222 Sum_probs=41.0
Q ss_pred cCEEEEecCCCChHHHHHHHHhhc-C-------CCCCCcCCchhHHHhhHHHHhhH
Q 004211 333 IHSVELVGSGSRIPAISRMLNSLF-N-------REPGRTINASECVARGCALQCAM 380 (768)
Q Consensus 333 i~~V~LvGG~srip~v~~~l~~~f-g-------~~v~~~~n~~eava~GAa~~a~~ 380 (768)
+..|+|+||+|.+|++.+.|...+ + ..|....||-..+=+||+.+|+.
T Consensus 559 V~nVllTGG~s~~pGmkeRi~kElt~mrP~gS~i~V~rasdP~LDAW~GA~~~a~n 614 (645)
T KOG0681|consen 559 VSNVLLTGGCSQLPGMKERIKKELTSMRPVGSSINVVRASDPVLDAWRGASAWAAN 614 (645)
T ss_pred hhheEeecccccCcCHHHHHHHHhheecccCCceEEEecCCcchhhhhhhHHhhcC
Confidence 788999999999999999998776 2 23566778999999999999986
No 119
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=88.78 E-value=15 Score=39.21 Aligned_cols=56 Identities=13% Similarity=0.083 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhCCCCCCCcCEEEEecCCCChHHHHHHHHhhc---CCCCCCcC---CchhHHHhhHH
Q 004211 315 MRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLF---NREPGRTI---NASECVARGCA 375 (768)
Q Consensus 315 i~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~f---g~~v~~~~---n~~eava~GAa 375 (768)
+.+.+..+++.. .++.|+|.||.+....+.+.|.+.+ |..+..+. -.|.++++|+|
T Consensus 247 l~~~~~~~~~~~-----~~~~v~lsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~p~~D~Gi~Ig~a 308 (314)
T TIGR03723 247 LVEKTKRALKKT-----GLKTLVVAGGVAANSRLRERLEELAEKAGLEVFIPPLELCTDNAAMIAAA 308 (314)
T ss_pred HHHHHHHHHHHh-----CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCCCCChHHHHHHHH
Confidence 334445555443 4677999999999999999999887 54443333 35889999986
No 120
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=87.73 E-value=1.5 Score=48.09 Aligned_cols=83 Identities=16% Similarity=0.201 Sum_probs=58.4
Q ss_pred ecHHHHHHHH-HHHHHHHHHHHHHHHHhCCCCCCCcCEEEEecCCCChHHHHHHHHhhcCCCCCCcCCchhHHHhhHHHH
Q 004211 299 IRREEFEKLS-SSLLERMRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQ 377 (768)
Q Consensus 299 itr~~fe~~~-~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~GAa~~ 377 (768)
.++++|-+.. +.+.-++...++.+-++++. .+..+-+=||.++..++.+.+.+.+|.+|.++.+ .|..|+|||+.
T Consensus 371 t~~~hi~RA~LEsiayQ~~dv~~aM~~d~~~---~~~~LrvDGG~s~n~~lmQfqADilg~~V~Rp~~-~EtTAlGaA~l 446 (499)
T COG0554 371 TTKAHIARATLESIAYQTRDVLEAMEKDSGI---KLTRLRVDGGASRNNFLMQFQADILGVPVERPVV-LETTALGAAYL 446 (499)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CceeEEEcCccccchhHHHHHHHHhCCeeecccc-chhhHHHHHHH
Confidence 4555544332 22333334444444444554 5788999999999999999999999998877766 56779999999
Q ss_pred hhHhcCCc
Q 004211 378 CAMLSPQY 385 (768)
Q Consensus 378 a~~ls~~~ 385 (768)
|..-.+.+
T Consensus 447 AGla~G~w 454 (499)
T COG0554 447 AGLAVGFW 454 (499)
T ss_pred HhhhhCcC
Confidence 98777643
No 121
>PRK13411 molecular chaperone DnaK; Provisional
Probab=86.82 E-value=5.2 Score=47.36 Aligned_cols=46 Identities=13% Similarity=0.168 Sum_probs=39.2
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccHHHHHHHHHHHHHHhhhhc
Q 004211 683 SLPSKVRDAVIDECSKAEEWLREKVTQQDSLPKDADPILWSTEIKRKSEALDLTCKCIM 741 (768)
Q Consensus 683 ~~~~~e~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~~~i~ 741 (768)
.++++++..+.+.+++++.||.+ ++ ...++++.+.++|++.+.++.
T Consensus 551 ~~~~~er~~i~~~l~~~~~wL~~------------~~-~~~~~~~~~~~el~~~~~~i~ 596 (653)
T PRK13411 551 LISEELKQRAEQKVEQLEAALTD------------PN-ISLEELKQQLEEFQQALLAIG 596 (653)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhc------------CC-CCHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999965 11 255899999999999988877
No 122
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=86.68 E-value=4.4 Score=47.82 Aligned_cols=45 Identities=18% Similarity=0.245 Sum_probs=40.0
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccHHHHHHHHHHHHHHhhhhc
Q 004211 682 HSLPSKVRDAVIDECSKAEEWLREKVTQQDSLPKDADPILWSTEIKRKSEALDLTCKCIM 741 (768)
Q Consensus 682 ~~~~~~e~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~~~i~ 741 (768)
..+++++++.+.+.+++++.||++. ..++++.|+++|+..++++.
T Consensus 548 ~~~~~~e~~~i~~~l~~~~~wL~~~---------------~~~~i~~k~~~L~~~~~~~~ 592 (627)
T PRK00290 548 DKVPADEKEKIEAAIKELKEALKGE---------------DKEAIKAKTEELTQASQKLG 592 (627)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcC---------------CHHHHHHHHHHHHHHHHHHH
Confidence 3479999999999999999999862 35899999999999999998
No 123
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=86.38 E-value=0.62 Score=40.07 Aligned_cols=22 Identities=32% Similarity=0.533 Sum_probs=19.4
Q ss_pred CeEEEEEcCccceEEEEEEcCC
Q 004211 1 MSVVGFDIGNENCVIAAVKQGG 22 (768)
Q Consensus 1 m~viGID~GTt~s~va~~~~g~ 22 (768)
|.++|||+|.|++++|+++..+
T Consensus 1 ~~ilgiD~Ggt~i~~a~~d~~g 22 (99)
T smart00732 1 KRVLGLDPGRKGIGVAVVDETG 22 (99)
T ss_pred CcEEEEccCCCeEEEEEECCCC
Confidence 7799999999999999987554
No 124
>PRK14878 UGMP family protein; Provisional
Probab=85.59 E-value=55 Score=35.03 Aligned_cols=53 Identities=17% Similarity=0.082 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhCCCCCCCcCEEEEecCCCChHHHHHHHHhhc---CCCCCCcC---CchhHHHh
Q 004211 315 MRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLF---NREPGRTI---NASECVAR 372 (768)
Q Consensus 315 i~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~f---g~~v~~~~---n~~eava~ 372 (768)
+...+.++++..+ +..|+|+||.+...++++.+.+.+ |.++..+. -.|.++++
T Consensus 229 l~~~~~~~~~~~g-----~~~vvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~~~~~D~GimI 287 (323)
T PRK14878 229 LVEVTERALAHTG-----KKEVLLVGGVAANRRLREKLEIMAEDRGAKFYVVPPEYAGDNGAMI 287 (323)
T ss_pred HHHHHHHHHHHhC-----CCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCCCCchHHHHH
Confidence 3334444444433 667999999999999999999876 54443333 34666666
No 125
>COG2377 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases [Posttranslational modification, protein turnover, chaperones]
Probab=84.31 E-value=10 Score=40.44 Aligned_cols=172 Identities=14% Similarity=0.137 Sum_probs=88.5
Q ss_pred CCcEEEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCCchhhHHHHHHHHHHHHHhhhcccCcc--CChHHHHHHHHHHH
Q 004211 193 GPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEVLSSYFAAQFKQQYDIDVY--TNVKASIRLRASCE 270 (768)
Q Consensus 193 ~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~--~~~~~~~rL~~~ae 270 (768)
.+...+|+++||= .-+|++- .+. .|++. |..-|-.-+|..+..+..+.|.+.-..-.. -+.....+|+
T Consensus 161 ~~~~r~vlNiGGI-aNlt~l~--~~~-~v~g~--DtGPgN~llD~wi~~~~g~~yD~~g~~A~~G~v~~~ll~~ll---- 230 (371)
T COG2377 161 PRERRAVLNIGGI-ANLTYLP--PGG-PVLGF--DTGPGNMLLDAWIQAHGGKPYDKDGAWAASGKVDEALLARLL---- 230 (371)
T ss_pred CCCCeEEEeccce-EEEEecC--CCC-ceeee--ecCCcchHHHHHHHHhhCCCcCcCcchhhcCCcCHHHHHHHh----
Confidence 4578999999983 2333332 222 45544 577788888988888777555432111000 1122222332
Q ss_pred HHhhhcCCCC--e---eeEEEeccccCcceEEEecHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEecCCCCh
Q 004211 271 KLKKVLSANA--E---APLNIECLMNEKDVKGFIRREEFEKLSSSLLERMRIPCQKALAGSGLNVEKIHSVELVGSGSRI 345 (768)
Q Consensus 271 ~~K~~Ls~~~--~---~~~~i~~l~~~~d~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~sri 345 (768)
...-|+... + ..+....+-+-.+-.-.++.+++..-...+ ...-| ++.......+.+.++++||+.+.
T Consensus 231 -~~p~F~~~~PkStgRe~F~~~wl~~~~~~~~~l~a~Dv~aTL~el---tA~tI---v~s~~~~~~~p~~l~vcGGG~~N 303 (371)
T COG2377 231 -AHPYFALPAPKSTGRELFNLQWLEQHLDDTQLLNAEDVQATLVEL---TAATI---VKSVATLQGDPRRLVVCGGGRRN 303 (371)
T ss_pred -hCCcccCCCcccCCccccchhhHHHHHhhccCCCHHHHHHHHHHH---HHHHH---HHHHhhccCCCceeEeecCCccC
Confidence 222332211 1 111111110000000003333333222222 11122 22222334467889999999999
Q ss_pred HHHHHHHHhhc-CCCCC----CcCCchhHHHhhHHHHhhHh
Q 004211 346 PAISRMLNSLF-NREPG----RTINASECVARGCALQCAML 381 (768)
Q Consensus 346 p~v~~~l~~~f-g~~v~----~~~n~~eava~GAa~~a~~l 381 (768)
|.+.+.|...+ |..|. ..+++|..=|.+-|+.|...
T Consensus 304 ~llm~rLa~l~~g~~V~~t~~~g~~gd~~EA~afA~LA~r~ 344 (371)
T COG2377 304 PLLMARLAALLEGVEVATTDEAGLDGDAVEAEAFAWLAWRT 344 (371)
T ss_pred HHHHHHHHHhcCCCeeeechhcCCCcchhhHHHHHHHHHHH
Confidence 99999999999 54553 24577777777778877654
No 126
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=83.98 E-value=1.1 Score=41.23 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=19.8
Q ss_pred CeEEEEEcCccceEEEEEEcCC
Q 004211 1 MSVVGFDIGNENCVIAAVKQGG 22 (768)
Q Consensus 1 m~viGID~GTt~s~va~~~~g~ 22 (768)
|.++|||+|+..+.+|+.++..
T Consensus 1 mriL~lD~G~kriGiAvsd~~~ 22 (135)
T PF03652_consen 1 MRILGLDYGTKRIGIAVSDPLG 22 (135)
T ss_dssp -EEEEEEECSSEEEEEEEETTT
T ss_pred CeEEEEEeCCCeEEEEEecCCC
Confidence 8899999999999999998876
No 127
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=83.88 E-value=7.3 Score=45.68 Aligned_cols=45 Identities=22% Similarity=0.322 Sum_probs=38.6
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccHHHHHHHHHHHHHHhhhhc
Q 004211 682 HSLPSKVRDAVIDECSKAEEWLREKVTQQDSLPKDADPILWSTEIKRKSEALDLTCKCIM 741 (768)
Q Consensus 682 ~~~~~~e~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~~~i~ 741 (768)
..+++++++.+.+.+++++.||++. ...+++.+.++|++.++++.
T Consensus 546 ~~~~~~e~~~l~~~l~~~~~wL~~~---------------d~~~i~~~~~~l~~~~~~~~ 590 (595)
T TIGR02350 546 DKLPAEEKEKIEKAVAELKEALKGE---------------DVEEIKAKTEELQQALQKLA 590 (595)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcC---------------CHHHHHHHHHHHHHHHHHHH
Confidence 3479999999999999999999762 22689999999999998876
No 128
>PLN02920 pantothenate kinase 1
Probab=82.02 E-value=55 Score=35.67 Aligned_cols=48 Identities=8% Similarity=-0.086 Sum_probs=35.7
Q ss_pred CcCEEEEecCCCChH-HHHHHHHhh---c--C-CCCCCcCCchhHHHhhHHHHhh
Q 004211 332 KIHSVELVGSGSRIP-AISRMLNSL---F--N-REPGRTINASECVARGCALQCA 379 (768)
Q Consensus 332 ~i~~V~LvGG~srip-~v~~~l~~~---f--g-~~v~~~~n~~eava~GAa~~a~ 379 (768)
.++.|+++|+..|.+ ..++.|.-. . | .+.....+.....|+||.+...
T Consensus 297 ~ik~Ivf~G~fir~~~~tm~~ls~a~~fwS~g~~ka~FLrHeGYlGAlGAfl~~~ 351 (398)
T PLN02920 297 GLKRIFFGGFFIRGHSYTMDTISVAVHFWSKGEAKAMFLRHEGFLGALGAFMSYE 351 (398)
T ss_pred CCCEEEEEeecccCcHHHHHHHHHHHHHhccCceeEEEecCcchhHHHHHHHhcc
Confidence 688899999999998 666644433 3 2 4556677888899999986543
No 129
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=82.01 E-value=8.6 Score=41.86 Aligned_cols=18 Identities=33% Similarity=0.514 Sum_probs=16.4
Q ss_pred eEEEEEcCccceEEEEEE
Q 004211 2 SVVGFDIGNENCVIAAVK 19 (768)
Q Consensus 2 ~viGID~GTt~s~va~~~ 19 (768)
.++.||||.|+.++|++.
T Consensus 76 ~~LaiD~GGTnlRvc~V~ 93 (466)
T COG5026 76 SVLAIDLGGTNLRVCLVV 93 (466)
T ss_pred CEEEEecCCceEEEEEEE
Confidence 489999999999999986
No 130
>PF02543 CmcH_NodU: Carbamoyltransferase; InterPro: IPR003696 The putative O-carbamoyltransferases (O-Cases) encoded by the nodU genes of Rhizobium fredii and Bradyrhizobium japonicum are involved in the synthesis of nodulation factors []. The cmcH genes of Nocardia lactamdurans and Streptomyces clavuligerus encode a functional 3'-hydroxymethylcephem O-carbamoyltransferase 2.1.3.7 from EC for cephamycin biosynthesis that shows significant similarity to the O-carbamoyltransferases [].; GO: 0003824 catalytic activity, 0009058 biosynthetic process; PDB: 3VES_A 3VER_A 3VEN_A 3VF2_A 3VEX_A 3VEW_A 3VET_A 3VEO_A 3VEZ_A 3VF4_A.
Probab=81.44 E-value=25 Score=38.26 Aligned_cols=81 Identities=16% Similarity=0.051 Sum_probs=55.9
Q ss_pred EecHHHHHHHHHHHHHHHH-HHHHHHHHhCCCCCCCcCE-EEEecCCCChHHHHHHHHhhcC-CCCCCc-CCchhHHHhh
Q 004211 298 FIRREEFEKLSSSLLERMR-IPCQKALAGSGLNVEKIHS-VELVGSGSRIPAISRMLNSLFN-REPGRT-INASECVARG 373 (768)
Q Consensus 298 ~itr~~fe~~~~~~~~~i~-~~i~~~l~~~~~~~~~i~~-V~LvGG~srip~v~~~l~~~fg-~~v~~~-~n~~eava~G 373 (768)
.-.+.++-..++..++++. ..++.++++.+ ++. +.|.||....-..-..|.+..+ .++..+ .-.|..+|+|
T Consensus 132 ~~~~~dlAa~~Q~~~E~~v~~~~~~~~~~~g-----~~~~L~laGGvaLN~~~N~~l~~~~~~~~v~V~Pa~gD~G~aiG 206 (360)
T PF02543_consen 132 TQRHADLAASAQKVLEEIVLHLVRHLLERTG-----IDNNLCLAGGVALNCKANGRLLEEPGFDNVFVPPAAGDAGLAIG 206 (360)
T ss_dssp ESS-HHHHHHHHHHHHHHHHHHHHHHHHHHT-------SEEEEESGGGG-HHHHHHHHTSTT-SEEE--TTTSGGGHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCeEEEechHHHHHHHHHHHHhcCCCCeEEECCCCCCcchHHH
Confidence 4567788777777776654 56667777766 444 9999999988888888888765 345444 4458899999
Q ss_pred HHHHhhHhcC
Q 004211 374 CALQCAMLSP 383 (768)
Q Consensus 374 Aa~~a~~ls~ 383 (768)
||+++.....
T Consensus 207 aA~~~~~~~~ 216 (360)
T PF02543_consen 207 AALYAWHELG 216 (360)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHhc
Confidence 9999986543
No 131
>TIGR03281 methan_mark_12 putative methanogenesis marker protein 12. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=81.09 E-value=7.4 Score=40.41 Aligned_cols=50 Identities=24% Similarity=0.238 Sum_probs=40.4
Q ss_pred cCEEEEecC--CCChH-HHHHHHHhhcCCCCCCcCCchhHHHhhHHHHhhHhcCC
Q 004211 333 IHSVELVGS--GSRIP-AISRMLNSLFNREPGRTINASECVARGCALQCAMLSPQ 384 (768)
Q Consensus 333 i~~V~LvGG--~srip-~v~~~l~~~fg~~v~~~~n~~eava~GAa~~a~~ls~~ 384 (768)
...|+|.|- ++|.| .+++.|++.|..++. .+.. ++.|.|+|+.|.-+.+.
T Consensus 263 ~~~IvLSGs~g~~r~~~~v~~~I~~~L~~~V~-~L~~-ksAA~G~AiIA~dI~gG 315 (326)
T TIGR03281 263 EAGVVLAGSGGTLREPINFSGKIKRVLSCKVL-VLDS-ESAAIGLALIAEDIFSG 315 (326)
T ss_pred CCcEEEeCcchhccCchHHHHHHHHHhCCCeE-Eecc-hhhhhhHHHHHHHHhCC
Confidence 357999997 99999 999999999986553 2333 78899999999877765
No 132
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=79.56 E-value=4.3 Score=44.00 Aligned_cols=71 Identities=20% Similarity=0.175 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEecCCCChHHHHHHHHhhcCC-CC------CCcCCchhHHHhhHHHH
Q 004211 305 EKLSSSLLERMRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNR-EP------GRTINASECVARGCALQ 377 (768)
Q Consensus 305 e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~fg~-~v------~~~~n~~eava~GAa~~ 377 (768)
++++..+..-+...|.+.++.... +++.|+++||+++.|++.+.|++.++. ++ ..+.+.-||+ +-|++
T Consensus 260 ~D~~aTlt~~TA~sI~~~i~~~~~---~~~~v~v~GGGa~N~~L~~~L~~~l~~~~v~~~~~~gi~~~~~EA~--aFA~L 334 (364)
T PF03702_consen 260 EDILATLTEFTAQSIADAIRRFPP---QPDEVYVCGGGARNPFLMERLQERLPGIPVKTTDELGIPPDAKEAM--AFAWL 334 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-T---T-EEEEEESGGGG-HHHHHHHHHH-TTCEEEEGGGGTS-CCCHHHH--HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC---CCceEEEECCCcCCHHHHHHHHhhCCCCEEecHHHcCCCHHHHHHH--HHHHH
Confidence 344445555555556666665432 378999999999999999999999963 43 2333555555 44556
Q ss_pred hhH
Q 004211 378 CAM 380 (768)
Q Consensus 378 a~~ 380 (768)
|..
T Consensus 335 a~~ 337 (364)
T PF03702_consen 335 AYR 337 (364)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 133
>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=78.32 E-value=6.3 Score=45.22 Aligned_cols=48 Identities=21% Similarity=0.550 Sum_probs=41.3
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccHHHHHHHHHHHHHHhhhhc-C
Q 004211 683 SLPSKVRDAVIDECSKAEEWLREKVTQQDSLPKDADPILWSTEIKRKSEALDLTCKCIM-R 742 (768)
Q Consensus 683 ~~~~~e~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~~~i~-k 742 (768)
.+.++++.++.+.|+++..||+.... --..+++.|+++|+..|++++ +
T Consensus 563 ~i~~~~~~~~~~~~~~~i~wl~~~~~------------~~~~e~e~k~~el~~~~~p~~~~ 611 (620)
T KOG0101|consen 563 KINEEDKQKILDKCNEVINWLDKNQL------------AEKEEFEHKQKELELVCNPIISK 611 (620)
T ss_pred ccChhhhhhHHHHHHHHHHHhhhccc------------ccccHHHHHHHHHHhhccHHHHh
Confidence 48999999999999999999987221 116899999999999999999 5
No 134
>PLN02939 transferase, transferring glycosyl groups
Probab=77.91 E-value=1.2e+02 Score=37.38 Aligned_cols=179 Identities=10% Similarity=0.078 Sum_probs=104.4
Q ss_pred CCHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHHHHHHHhh--HhhccCCHHHHHHHHHHHHHHHHHHhhcCCCc
Q 004211 555 MTKTELSEAVEKEHQLVQQDLKMERTKDRKNALESYVYEMRDKISN--IYRSFATESEREGISRNLRDTEEWLYEDGDDE 632 (768)
Q Consensus 555 ls~~e~~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~--~~~~~~t~~e~~~l~~~l~~~~~WL~~~g~~a 632 (768)
+-+++++.++.++.....-|+....++..+.-|++++-++..++-. .-....++-+-+.+-++++.++.-|..-...+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (977)
T PLN02939 237 LLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKVENLQDLLDRATNQV 316 (977)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456778888888888888888888899999999999999888852 11122223333445555655555554321111
Q ss_pred c-HHHHHHHHHHHHHhHhHHHH---hhHhHHHHHHHHHHHHHHHHHHHHHHHhCC-CChhhHHHHHHHHHHHHHHHHHHH
Q 004211 633 S-ENVYAERLEDLKKLVDPIEG---RYKDEEARAQATGALLKCAMDYRKVVEAHS-LPSKVRDAVIDECSKAEEWLREKV 707 (768)
Q Consensus 633 ~-~~~~~~kl~~L~~~~~pi~~---R~~e~~~rp~a~~~l~~~l~~~~~~~~~~~-~~~~e~~~v~~~~~~~~~Wl~~~~ 707 (768)
. .....++-++|++.++.++. +..-++-++..++.+++.+...+..+.... -....++--...+++++.-|+...
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (977)
T PLN02939 317 EKAALVLDQNQDLRDKVDKLEASLKEANVSKFSSYKVELLQQKLKLLEERLQASDHEIHSYIQLYQESIKEFQDTLSKLK 396 (977)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 01112222333333333333 334456688888888888877776651100 011223334455666666666666
Q ss_pred Hhhhc----CCCCCCCcccHHHHHHHHHHH
Q 004211 708 TQQDS----LPKDADPILWSTEIKRKSEAL 733 (768)
Q Consensus 708 ~~q~~----~~~~~dP~~~~~di~~k~~~l 733 (768)
.++++ .|-++.|.-.|.+|.-+++.+
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~lll~id~~ 426 (977)
T PLN02939 397 EESKKRSLEHPADDMPSEFWSRILLLIDGW 426 (977)
T ss_pred hhhhcccccCchhhCCHHHHHHHHHHHHHH
Confidence 66655 455667766777777777665
No 135
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=77.64 E-value=19 Score=41.83 Aligned_cols=81 Identities=14% Similarity=0.192 Sum_probs=60.4
Q ss_pred HHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHhCC----CChhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccHHH
Q 004211 650 PIEGRYKDEEARAQATGALLKCAMDYRKVVEAHS----LPSKVRDAVIDECSKAEEWLREKVTQQDSLPKDADPILWSTE 725 (768)
Q Consensus 650 pi~~R~~e~~~rp~a~~~l~~~l~~~~~~~~~~~----~~~~e~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~d 725 (768)
.+..+=.+..+|..|.+.|...|......+.+.. -+++|+..|.+.+.....||.+-..++.+ .+
T Consensus 648 d~~~~e~~k~~re~a~N~LE~~l~e~q~~l~d~ey~e~at~EEk~~L~~~~~~~~~Wleed~~~~~t-----------~~ 716 (902)
T KOG0104|consen 648 DFVQKEKEKSEREEASNELEAFLFELQDKLDDDEYAEVATEEEKKILKKKVSLLMDWLEEDGSQTPT-----------EM 716 (902)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCchHhhhcCHHHHHHHHHHHHHHHHHHHhhccccch-----------hH
Confidence 3444556667788888888888888877774322 68899999999999999999997733222 56
Q ss_pred HHHHHHHHHHHhhhhc
Q 004211 726 IKRKSEALDLTCKCIM 741 (768)
Q Consensus 726 i~~k~~~l~~~~~~i~ 741 (768)
+..|...|++.++.+.
T Consensus 717 ~~ek~a~L~~l~~~~~ 732 (902)
T KOG0104|consen 717 LTEKLAELKKLETSKN 732 (902)
T ss_pred HHHHHHHHHHHHhhhh
Confidence 7777777777776654
No 136
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=77.28 E-value=1.1e+02 Score=32.97 Aligned_cols=41 Identities=12% Similarity=0.178 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCcCEEEEecCCCChHHHHHHHHhhc
Q 004211 311 LLERMRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLF 356 (768)
Q Consensus 311 ~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~f 356 (768)
+++-+.+.+.++++.. .++.|+++||-+...++|++|++.+
T Consensus 247 v~~~L~~k~~~a~~~~-----~~~~lvv~GGVAaN~~LR~~l~~~~ 287 (345)
T PTZ00340 247 IFAMLVEVTERAMSHC-----GSNEVLIVGGVGCNLRLQEMMQQMA 287 (345)
T ss_pred HHHHHHHHHHHHHHHh-----CCCeEEEcCCHHHHHHHHHHHHHHH
Confidence 3344444555555543 3678999999999999999999987
No 137
>COG2441 Predicted butyrate kinase [Energy production and conversion]
Probab=76.30 E-value=17 Score=37.05 Aligned_cols=53 Identities=23% Similarity=0.275 Sum_probs=35.2
Q ss_pred CcCEEEEecCCCChH----HHHHHHHhhc---C--CCCC--CcCCchhHHHhhHHHHhhHhcCC
Q 004211 332 KIHSVELVGSGSRIP----AISRMLNSLF---N--REPG--RTINASECVARGCALQCAMLSPQ 384 (768)
Q Consensus 332 ~i~~V~LvGG~srip----~v~~~l~~~f---g--~~v~--~~~n~~eava~GAa~~a~~ls~~ 384 (768)
..+.|+|.|-.+|+| -|++.|++.| | .++. ...---.-.|.|||+.|..+++.
T Consensus 273 ~pd~iylSGrf~~~~~~~~dv~~~l~d~~s~~g~~~evr~le~~~K~KeaA~GaAiiAnaiAGG 336 (374)
T COG2441 273 YPDAIYLSGRFSRIPRFFSDVKEKLRDAFSSYGFGIEVRKLESRAKAKEAAEGAAIIANAIAGG 336 (374)
T ss_pred CcceEEEeeecccccchhhHHHHHHHHHHhhcCccceeehhhhhhhhhhhccchhhhhhhhcch
Confidence 567899999999976 5667777777 2 2321 11122233588999998777664
No 138
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=76.00 E-value=23 Score=42.01 Aligned_cols=44 Identities=18% Similarity=0.155 Sum_probs=38.8
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccHHHHHHHHHHHHHHhhhhc
Q 004211 683 SLPSKVRDAVIDECSKAEEWLREKVTQQDSLPKDADPILWSTEIKRKSEALDLTCKCIM 741 (768)
Q Consensus 683 ~~~~~e~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~~~i~ 741 (768)
.+++++++.+.+.+++++.||.+. ...+++.+.++|+..+.++.
T Consensus 590 ~~s~~ere~i~~~l~~~~~WL~~~---------------d~~~i~~k~~eL~~~l~~l~ 633 (663)
T PTZ00400 590 KISDADKDELKQKITKLRSTLSSE---------------DVDSIKDKTKQLQEASWKIS 633 (663)
T ss_pred hCCHHHHHHHHHHHHHHHHHHhcC---------------CHHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999999751 24899999999999999888
No 139
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=75.78 E-value=3.3 Score=48.65 Aligned_cols=42 Identities=14% Similarity=0.150 Sum_probs=29.6
Q ss_pred ceeeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEE
Q 004211 168 PLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVAS 213 (768)
Q Consensus 168 ~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~ 213 (768)
+..+.+-|.|-.++.+..... ..+ +++++||||.|||++++.
T Consensus 255 v~tI~SGPAagvvGAa~ltg~---~~g-~~i~~DmGGTStDva~i~ 296 (674)
T COG0145 255 VETILSGPAAGVVGAAYLTGL---KAG-NAIVFDMGGTSTDVALII 296 (674)
T ss_pred eeeEeeccHHHHHHHHHhccc---ccC-CEEEEEcCCcceeeeeee
Confidence 444677777777665544111 122 699999999999999987
No 140
>CHL00094 dnaK heat shock protein 70
Probab=75.54 E-value=17 Score=42.82 Aligned_cols=44 Identities=16% Similarity=0.102 Sum_probs=38.1
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccHHHHHHHHHHHHHHhhhhc
Q 004211 683 SLPSKVRDAVIDECSKAEEWLREKVTQQDSLPKDADPILWSTEIKRKSEALDLTCKCIM 741 (768)
Q Consensus 683 ~~~~~e~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~~~i~ 741 (768)
.++++++..+.+.+++++.||.+. -..+++.+.+.|++.++++.
T Consensus 551 ~~~~~~~~~~~~~l~~~~~wl~~~---------------~~~~~~~~~~~l~~~~~~~~ 594 (621)
T CHL00094 551 KISEEKKEKIENLIKKLRQALQND---------------NYESIKSLLEELQKALMEIG 594 (621)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcC---------------CHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999761 11789999999999998888
No 141
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=74.28 E-value=2.9 Score=42.84 Aligned_cols=20 Identities=25% Similarity=0.506 Sum_probs=17.9
Q ss_pred EEEEEcCccceEEEEEEcCC
Q 004211 3 VVGFDIGNENCVIAAVKQGG 22 (768)
Q Consensus 3 viGID~GTt~s~va~~~~g~ 22 (768)
++|||+|||++++++++..+
T Consensus 2 ~lgiDiGTts~K~~l~d~~g 21 (245)
T PF00370_consen 2 YLGIDIGTTSVKAVLFDEDG 21 (245)
T ss_dssp EEEEEECSSEEEEEEEETTS
T ss_pred EEEEEEcccceEEEEEeCCC
Confidence 79999999999999998554
No 142
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=74.18 E-value=35 Score=40.36 Aligned_cols=20 Identities=25% Similarity=0.243 Sum_probs=17.3
Q ss_pred EEEEEcCccceEEEEEEcCC
Q 004211 3 VVGFDIGNENCVIAAVKQGG 22 (768)
Q Consensus 3 viGID~GTt~s~va~~~~g~ 22 (768)
++|||+|.|++++++++.++
T Consensus 20 ~L~iDIGGT~ir~al~~~~g 39 (638)
T PRK14101 20 RLLADVGGTNARFALETGPG 39 (638)
T ss_pred EEEEEcCchhheeeeecCCC
Confidence 89999999999999986443
No 143
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=72.28 E-value=3.6 Score=38.01 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=19.6
Q ss_pred CeEEEEEcCccceEEEEEEcCC
Q 004211 1 MSVVGFDIGNENCVIAAVKQGG 22 (768)
Q Consensus 1 m~viGID~GTt~s~va~~~~g~ 22 (768)
|.++|||+|+..+.+|+.++.+
T Consensus 4 ~~iLalD~G~kriGvAv~d~~~ 25 (138)
T PRK00109 4 GRILGLDVGTKRIGVAVSDPLG 25 (138)
T ss_pred CcEEEEEeCCCEEEEEEecCCC
Confidence 6799999999999999987754
No 144
>PRK00976 hypothetical protein; Provisional
Probab=71.55 E-value=23 Score=37.54 Aligned_cols=51 Identities=22% Similarity=0.244 Sum_probs=39.2
Q ss_pred CcCEEEEecCCCChH--HHHHHHHhhcCCCCCCcCCchhHHHhhHHHHhhHhcCC
Q 004211 332 KIHSVELVGSGSRIP--AISRMLNSLFNREPGRTINASECVARGCALQCAMLSPQ 384 (768)
Q Consensus 332 ~i~~V~LvGG~srip--~v~~~l~~~fg~~v~~~~n~~eava~GAa~~a~~ls~~ 384 (768)
+++.|+|-||-++.+ .+.+.+++.+... ...-..++.++|||+.|..+.+.
T Consensus 263 DPe~IVLGGGVS~~~e~~L~~~I~e~l~~~--~a~LG~dAGaiGAA~iA~~i~~G 315 (326)
T PRK00976 263 PEDNVVLAGSVGEMDEPDVSERIKELLDKK--VLVLGKESAAIGLALIARDIFNG 315 (326)
T ss_pred CCCEEEEcCccccCchhHHHHHHHHHhccc--ccccCCchHHHHHHHHHHHHhCC
Confidence 477899999999998 7888888888543 23334589999999998776443
No 145
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=69.95 E-value=4.5 Score=37.31 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=19.6
Q ss_pred CeEEEEEcCccceEEEEEEcCC
Q 004211 1 MSVVGFDIGNENCVIAAVKQGG 22 (768)
Q Consensus 1 m~viGID~GTt~s~va~~~~g~ 22 (768)
|.++||||||-.+.||+.+..+
T Consensus 2 ~~ilalD~G~KrIGvA~sd~~~ 23 (141)
T COG0816 2 MRILALDVGTKRIGVAVSDILG 23 (141)
T ss_pred ceEEEEecCCceEEEEEecCCC
Confidence 7899999999999999987654
No 146
>PLN03184 chloroplast Hsp70; Provisional
Probab=69.72 E-value=63 Score=38.49 Aligned_cols=44 Identities=16% Similarity=0.242 Sum_probs=34.0
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccHHHHHHHHHHHHHHhhhhc
Q 004211 683 SLPSKVRDAVIDECSKAEEWLREKVTQQDSLPKDADPILWSTEIKRKSEALDLTCKCIM 741 (768)
Q Consensus 683 ~~~~~e~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~~~i~ 741 (768)
.+++++++.+.+.+++++.||... | ..+++.+.+++.+.++++.
T Consensus 588 ~~~~eer~~l~~~l~~~e~wL~~~-----------d----~~~ik~~~~~l~~~l~~l~ 631 (673)
T PLN03184 588 KVPADVKEKVEAKLKELKDAIASG-----------S----TQKMKDAMAALNQEVMQIG 631 (673)
T ss_pred hCCHHHHHHHHHHHHHHHHHHhcC-----------C----HHHHHHHHHHHHHHHHHHH
Confidence 369999999999999999999751 2 2577777777777666655
No 147
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=68.48 E-value=2.4e+02 Score=32.89 Aligned_cols=18 Identities=0% Similarity=0.063 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004211 662 AQATGALLKCAMDYRKVV 679 (768)
Q Consensus 662 p~a~~~l~~~l~~~~~~~ 679 (768)
|..++.++..+..+....
T Consensus 300 p~~L~ele~RL~~l~~Lk 317 (563)
T TIGR00634 300 PERLNEIEERLAQIKRLK 317 (563)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555666666655544443
No 148
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=67.77 E-value=62 Score=30.42 Aligned_cols=141 Identities=15% Similarity=0.133 Sum_probs=72.4
Q ss_pred EEEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCCchhhHHHHHHHHHHHHHhhhcccCccCChHHHHHHHHHHHHHhhh
Q 004211 196 YVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEVLSSYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKV 275 (768)
Q Consensus 196 ~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~ 275 (768)
.||=+|.|-.+|-.++++..++.++++..+--..-.+...-.+ +..+....+++-..
T Consensus 1 rILGIDPGl~~~G~av~~~~~~~~~~~~~g~i~t~~~~~~~~r-----------------------l~~I~~~l~~~i~~ 57 (154)
T cd00529 1 RILGIDPGSRNTGYGVIEQEGRKLIYLASGVIRTSSDAPLPSR-----------------------LKTIYDGLNEVIDQ 57 (154)
T ss_pred CEEEEccCcCceEEEEEEeeCCeEEEEEeeEEECCCCCCHHHH-----------------------HHHHHHHHHHHHHH
Confidence 3788999999999999998888777766542111111111111 11122222222222
Q ss_pred cCCCCeeeEEEeccccCcceEEEecHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-----CCCcCEEEEec-CCCChHHHH
Q 004211 276 LSANAEAPLNIECLMNEKDVKGFIRREEFEKLSSSLLERMRIPCQKALAGSGLN-----VEKIHSVELVG-SGSRIPAIS 349 (768)
Q Consensus 276 Ls~~~~~~~~i~~l~~~~d~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~-----~~~i~~V~LvG-G~srip~v~ 349 (768)
.. -..+.+|..+=+.. .+..+ .+..+...+..++...++. +..+...+ +| |.+.=--|+
T Consensus 58 ~~---Pd~vaiE~~~~~~n---------~~s~~--~l~~~~Gvi~~~~~~~~i~v~e~~P~~vKk~~-tG~G~A~KeqV~ 122 (154)
T cd00529 58 FQ---PDVVAIERVFFAKN---------PDSAL--KLGQARGALILALANRNLPVFEYTPNQVKKAV-TGYGKADKDQVQ 122 (154)
T ss_pred hC---CCEEEEEEhhcccC---------hHHHH--HHHHHHHHHHHHHHHcCCCEEEEccCeeEEEE-ECCCCCCHHHHH
Confidence 21 12455554321111 11111 2333455555666665554 44444443 44 555566799
Q ss_pred HHHHhhcCCCCC-CcCCchhHHHhhH
Q 004211 350 RMLNSLFNREPG-RTINASECVARGC 374 (768)
Q Consensus 350 ~~l~~~fg~~v~-~~~n~~eava~GA 374 (768)
.+++..++.... .+.|...|.|.+.
T Consensus 123 ~mv~~~l~~~~~~~~~d~aDAlaiA~ 148 (154)
T cd00529 123 HMVKRLLNLSEIPKPDDAADALAVAI 148 (154)
T ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHH
Confidence 999999985442 3344445555543
No 149
>PLN02362 hexokinase
Probab=67.73 E-value=24 Score=40.18 Aligned_cols=33 Identities=18% Similarity=0.042 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHcCC--CceeeccchHHHHHHhhh
Q 004211 152 VQRRAYLDAATIAGL--KPLRLMHDCTATALGYGI 184 (768)
Q Consensus 152 ~qr~~l~~Aa~~AGl--~~~~li~Ep~Aaal~y~~ 184 (768)
.-.+.|.+|...-|+ ++..|+|+.+|+.++.++
T Consensus 206 DVv~lL~~Al~r~~l~v~v~AlvNDTVgTL~a~aY 240 (509)
T PLN02362 206 DVAECLQGALNRRGLDMRVAALVNDTVGTLALGHY 240 (509)
T ss_pred hHHHHHHHHHHHcCCCcEEEEEEEcCHHHHHhhhc
Confidence 344555566655564 578899999998887554
No 150
>PRK02224 chromosome segregation protein; Provisional
Probab=67.41 E-value=3e+02 Score=34.05 Aligned_cols=71 Identities=18% Similarity=0.255 Sum_probs=38.0
Q ss_pred CCCHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHHHHHHHhhHhhccCCHHHHHHHHHHHHHHHHHH
Q 004211 554 GMTKTELSEAVEKEHQLVQQDLKMERTKDRKNALESYVYEMRDKISNIYRSFATESEREGISRNLRDTEEWL 625 (768)
Q Consensus 554 ~ls~~e~~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~t~~e~~~l~~~l~~~~~WL 625 (768)
..++.+...+..++..+..-+.......+++..++...-.++..+.+ +...+.+.++..+...|...+.=+
T Consensus 145 ~~~p~~R~~ii~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~l~~~l~~~~~~l 215 (880)
T PRK02224 145 NATPSDRQDMIDDLLQLGKLEEYRERASDARLGVERVLSDQRGSLDQ-LKAQIEEKEEKDLHERLNGLESEL 215 (880)
T ss_pred cCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36778888888888876555555545555555555555555555542 122222233344444444444433
No 151
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=67.05 E-value=11 Score=44.85 Aligned_cols=48 Identities=15% Similarity=0.050 Sum_probs=37.9
Q ss_pred CcCEEEEecCCCChHHHHHHHHhhcC---CCCCCc---CCchhHHHhhHHHHhh
Q 004211 332 KIHSVELVGSGSRIPAISRMLNSLFN---REPGRT---INASECVARGCALQCA 379 (768)
Q Consensus 332 ~i~~V~LvGG~srip~v~~~l~~~fg---~~v~~~---~n~~eava~GAa~~a~ 379 (768)
.++.|+|+||......+.+.|.+.++ .++..+ .-.|.++++|.|++|+
T Consensus 658 g~~~VvLSGGVfqN~~L~~~L~~~L~~~g~~v~~p~~~p~nDgGislGQa~~a~ 711 (711)
T TIGR00143 658 GIHKIVISGGVFYNRLLLERLAKYLKGLGFQFLFHRHLPPGDGGISLGQAVAAA 711 (711)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHhCCCEEEccCCCCCCHHHHHHHHHHHhC
Confidence 46789999999999999999988773 344332 2459999999998874
No 152
>PRK03011 butyrate kinase; Provisional
Probab=66.95 E-value=19 Score=39.11 Aligned_cols=45 Identities=13% Similarity=0.099 Sum_probs=36.4
Q ss_pred CcCEEEEecCCCChHHHHHHHHhhcC----CCCCCcCCchhHHHhhHHH
Q 004211 332 KIHSVELVGSGSRIPAISRMLNSLFN----REPGRTINASECVARGCAL 376 (768)
Q Consensus 332 ~i~~V~LvGG~srip~v~~~l~~~fg----~~v~~~~n~~eava~GAa~ 376 (768)
+++.|+|.||.+..+.+.+.|.+.+. ..+....+-.+|.+.||+.
T Consensus 295 dpD~IVlgGGI~~~~~l~~~I~~~l~~~~pv~i~p~~~e~~A~a~GA~r 343 (358)
T PRK03011 295 KVDAIVLTGGLAYSKRLVERIKERVSFIAPVIVYPGEDEMEALAEGALR 343 (358)
T ss_pred CCCEEEEeCccccCHHHHHHHHHHHHhhCCeEEEeCCCHHHHHHHHHHH
Confidence 58999999999999999988887774 3455566777899999864
No 153
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=66.79 E-value=67 Score=32.81 Aligned_cols=93 Identities=18% Similarity=0.177 Sum_probs=54.5
Q ss_pred cCCCCeEEE--EeCCCCCHHHHHHHHHHHHHcCCCceeeccchHHHHH-HhhhcccCCCCCCCcEEEEEEeCCceEEEEE
Q 004211 135 KIPISNCVI--GVPCYLTDVQRRAYLDAATIAGLKPLRLMHDCTATAL-GYGIYKTDFSNVGPTYVVFVDIGHCDTQVCV 211 (768)
Q Consensus 135 ~~~~~~~Vi--tVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal-~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv 211 (768)
+..+..++. .+|.+|+- -+++++++.-.|.+. ++-+.-+||+ ....+.. ......++++|+|-|+|-+.+
T Consensus 111 g~~~~~~~y~~~~P~~~TR--m~av~~~~~~~~~~~--~vmDTg~AAvlGal~d~~---v~~~~~~~~vniGN~HTlaa~ 183 (254)
T PF08735_consen 111 GGRPESFVYADDPPPYFTR--MRAVRESLGGAGYDE--VVMDTGPAAVLGALCDPE---VSSREGIIVVNIGNGHTLAAL 183 (254)
T ss_pred CCCHHHeeecCCCcHHHHH--HHHHHHHhccCCCCc--eEecCHHHHHhhhhcChh---hhccCCeEEEEeCCccEEEEE
Confidence 445667777 88988663 355666666666665 4444445554 3322211 133567999999999999888
Q ss_pred EEeeCCeEEEEEEeCCCCCchhhHH
Q 004211 212 ASYENGHMKILSHAFDESLGGRDFD 236 (768)
Q Consensus 212 ~~~~~~~~~vl~~~~~~~lGG~~~d 236 (768)
+. ++.+.=+...-...+-...+.
T Consensus 184 v~--~~rI~GvfEHHT~~l~~~kL~ 206 (254)
T PF08735_consen 184 VK--DGRIYGVFEHHTGMLTPEKLE 206 (254)
T ss_pred Ee--CCEEEEEEecccCCCCHHHHH
Confidence 83 444433333334444444333
No 154
>cd06007 R3H_DEXH_helicase R3H domain of a group of proteins which also contain a DEXH-box helicase domain, and may function as ATP-dependent DNA or RNA helicases. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=66.63 E-value=16 Score=28.13 Aligned_cols=29 Identities=28% Similarity=0.266 Sum_probs=26.8
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHHHcCCCc
Q 004211 140 NCVIGVPCYLTDVQRRAYLDAATIAGLKP 168 (768)
Q Consensus 140 ~~VitVPa~~~~~qr~~l~~Aa~~AGl~~ 168 (768)
...++.|+.++..+|..+-+.|...||..
T Consensus 16 ~~~l~Fpp~ls~~eR~~vH~~a~~~gL~s 44 (59)
T cd06007 16 NEEYEFPSSLTNHERAVIHRLCRKLGLKS 44 (59)
T ss_pred ccEEEcCCCCCHHHHHHHHHHHHHcCCCc
Confidence 67789999999999999999999999875
No 155
>PRK07058 acetate kinase; Provisional
Probab=66.38 E-value=35 Score=37.21 Aligned_cols=47 Identities=15% Similarity=0.101 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEecCCC-ChHHHHHHHHhhcC
Q 004211 307 LSSSLLERMRIPCQKALAGSGLNVEKIHSVELVGSGS-RIPAISRMLNSLFN 357 (768)
Q Consensus 307 ~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~s-rip~v~~~l~~~fg 357 (768)
.++-+..++.+.|-......| .+|.|+++||-+ ..+.|++.+.+.++
T Consensus 297 A~d~f~yri~k~IGa~~a~Lg----~vDaiVfTGGIgEns~~vr~~i~~~l~ 344 (396)
T PRK07058 297 ALDLFALRIAGEIARLAATLG----GLDAVVFTAGIGEHQPAIRAAVCERLA 344 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHhC----CCCEEEECCccccCcHHHHHHHHhhhh
Confidence 344455666666655554433 699999999999 99999999998774
No 156
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=66.36 E-value=1.9e+02 Score=30.94 Aligned_cols=52 Identities=19% Similarity=0.117 Sum_probs=36.1
Q ss_pred HHHHHHHHhCCCCCCCcCEEEEecCCCChHHHHHHHHhhc---CCCCCCcC---CchhHHHhh
Q 004211 317 IPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLF---NREPGRTI---NASECVARG 373 (768)
Q Consensus 317 ~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~f---g~~v~~~~---n~~eava~G 373 (768)
..++++++..+ +..|+|+||.+....+.+.|.+.+ |.++..+. -.|.++++|
T Consensus 232 ~~a~~~~~~~g-----~~~lvlsGGVa~N~~L~~~l~~~l~~~g~~v~~~~~~p~~D~Gi~Ig 289 (322)
T TIGR03722 232 EVTERALAHTG-----KKEVLLVGGVAANRRLREMLELMAEDRGAKFYVPPPEYAGDNGAMIA 289 (322)
T ss_pred HHHHHHHHHhC-----CCeEEEeccHHHHHHHHHHHHHHHHHCCCEEEcCCCCCCchHHHHHH
Confidence 34444444433 567999999999999999999855 44443332 347888888
No 157
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=65.44 E-value=1.2e+02 Score=32.06 Aligned_cols=39 Identities=23% Similarity=0.295 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHhCCCCCCCcCEEEEecCCCChHHHHHHHHhhc
Q 004211 313 ERMRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLF 356 (768)
Q Consensus 313 ~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~f 356 (768)
+-+.+.++++++.. .++.|+|.||.+....+++.|.+.+
T Consensus 244 ~~l~~~~~~~~~~~-----g~~~vvlsGGVa~N~~L~~~l~~~~ 282 (305)
T TIGR00329 244 DHLIEKTKRALKDT-----GPKELVLVGGVSANKRLREMLETLC 282 (305)
T ss_pred HHHHHHHHHHHHHc-----CCCEEEEECCHHHHHHHHHHHHHHH
Confidence 33444555555543 4677999999999999999998887
No 158
>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.85 E-value=1.5e+02 Score=28.93 Aligned_cols=130 Identities=17% Similarity=0.212 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHhHhHHHHhhHhH---HHHHHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHHHHHHHhh
Q 004211 634 ENVYAERLEDLKKLVDPIEGRYKDE---EARAQATGALLKCAMDYRKVVEAHSLPSKVRDAVIDECSKAEEWLREKVTQQ 710 (768)
Q Consensus 634 ~~~~~~kl~~L~~~~~pi~~R~~e~---~~rp~a~~~l~~~l~~~~~~~~~~~~~~~e~~~v~~~~~~~~~Wl~~~~~~q 710 (768)
+..|++.|.++.....-|..-..-. ..--+.+..++..-...+... .+++-..+..+.+.|.+-+.--++.....
T Consensus 70 KK~~E~qL~qidG~l~tie~Qr~alEnA~~n~Evl~~m~~~A~AmK~~h--~~mDiDkVdd~MdeI~eQqe~a~eIseAi 147 (221)
T KOG1656|consen 70 KKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLDAMGSAAKAMKAAH--KNMDIDKVDDLMDEIAEQQEVAEEISEAI 147 (221)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHH--hccChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777776666666532222 223344445555544444444 55788888999999988877776665554
Q ss_pred hcCCCCCCCcccHHHHHHHHHHHHHHh--hhhc-CCCCCCCCCCC-------CCCcccccCCCCCC
Q 004211 711 DSLPKDADPILWSTEIKRKSEALDLTC--KCIM-RSNPSVPIRDD-------ANDSDRKRKSDHME 766 (768)
Q Consensus 711 ~~~~~~~dP~~~~~di~~k~~~l~~~~--~~i~-kpkpk~~~~~~-------~~~~~~~~~~~~~~ 766 (768)
.. |.--.-.|--.|+...+++|+... +.++ .+.|.|+-|+- .+++.|+-.+++-+
T Consensus 148 S~-Pvg~~a~~DEDEL~~ELdeLeqeeld~~ll~~~~p~v~LP~vPs~~lPa~~~~~~~a~E~d~~ 212 (221)
T KOG1656|consen 148 SA-PVGFGADFDEDELMAELDELEQEELDKELLDIRAPPVPLPDVPSIALPAKPASRPKAEEDDDD 212 (221)
T ss_pred hC-ccccccccCHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCccccCcccccCCCcchhhhH
Confidence 43 332111177789999999998633 4455 33333333321 23555565555543
No 159
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=63.77 E-value=2.9e+02 Score=33.13 Aligned_cols=42 Identities=10% Similarity=0.086 Sum_probs=19.5
Q ss_pred CCHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHHHHHHH
Q 004211 555 MTKTELSEAVEKEHQLVQQDLKMERTKDRKNALESYVYEMRDKI 598 (768)
Q Consensus 555 ls~~e~~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l 598 (768)
.+.+-++-+.+..+.+.. .-......|+++++..+-.++...
T Consensus 533 ~~~E~l~lL~~a~~vlre--eYi~~~~~ar~ei~~rv~~Lk~~~ 574 (717)
T PF10168_consen 533 SPQECLELLSQATKVLRE--EYIEKQDLAREEIQRRVKLLKQQK 574 (717)
T ss_pred CCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445544444443333331 112223456666666655555444
No 160
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=63.11 E-value=5.8 Score=45.51 Aligned_cols=20 Identities=15% Similarity=0.278 Sum_probs=17.9
Q ss_pred EEEEEcCccceEEEEEEcCC
Q 004211 3 VVGFDIGNENCVIAAVKQGG 22 (768)
Q Consensus 3 viGID~GTt~s~va~~~~g~ 22 (768)
++|||+|||++++++++..+
T Consensus 4 ~lgiDiGTts~Ka~l~d~~G 23 (504)
T PTZ00294 4 IGSIDQGTTSTRFIIFDEKG 23 (504)
T ss_pred EEEEecCCCceEEEEECCCC
Confidence 79999999999999998654
No 161
>PTZ00107 hexokinase; Provisional
Probab=63.02 E-value=28 Score=39.18 Aligned_cols=39 Identities=13% Similarity=0.060 Sum_probs=26.1
Q ss_pred CCCHHHHHHHHHHHHHcCC--CceeeccchHHHHHHhhhcc
Q 004211 148 YLTDVQRRAYLDAATIAGL--KPLRLMHDCTATALGYGIYK 186 (768)
Q Consensus 148 ~~~~~qr~~l~~Aa~~AGl--~~~~li~Ep~Aaal~y~~~~ 186 (768)
--+..-.+.|.+|...-|+ .++.++|+.+|+.++.++..
T Consensus 191 v~G~DV~~lL~~Al~r~~l~v~v~AivNDTVgTL~a~ay~~ 231 (464)
T PTZ00107 191 VEGKDVGELLNDAFKRNNVPANVVAVLNDTVGTLISCAYQK 231 (464)
T ss_pred ccCchHHHHHHHHHHHcCCCceEEEEEEcCHHHHHHHHhcC
Confidence 3344445566666665555 47889999999988766543
No 162
>PLN02405 hexokinase
Probab=62.68 E-value=49 Score=37.60 Aligned_cols=58 Identities=22% Similarity=0.193 Sum_probs=35.1
Q ss_pred CHHHHHHHHHHHHHcCCC--ceeeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEe
Q 004211 150 TDVQRRAYLDAATIAGLK--PLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASY 214 (768)
Q Consensus 150 ~~~qr~~l~~Aa~~AGl~--~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~ 214 (768)
...-.+.|.+|.+.-|++ +..|+|+.+++.++.++.. +...+=+=+|-||=-+.+-+.
T Consensus 204 G~DVv~lL~~Al~r~~l~v~v~AlvNDTVGTL~a~aY~~-------~~~~iG~IlGTGtNacY~E~~ 263 (497)
T PLN02405 204 GQDVVGELTKAMERVGLDMRVSALVNDTIGTLAGGRYYN-------PDVVAAVILGTGTNAAYVERA 263 (497)
T ss_pred CchHHHHHHHHHHHcCCCceEEEEEecCHHHHHHhhcCC-------CCceEEEEEeCCeeeEEEeec
Confidence 333455666666666664 7889999999888766532 223333336777655554433
No 163
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=62.23 E-value=2.2e+02 Score=30.43 Aligned_cols=53 Identities=17% Similarity=0.340 Sum_probs=38.2
Q ss_pred ecHHHHHHHHHH----HHHHHHHHHHHHHHhCCCCCCCcCEEEEecCCCChHHHHHHHHhhc
Q 004211 299 IRREEFEKLSSS----LLERMRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLF 356 (768)
Q Consensus 299 itr~~fe~~~~~----~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~f 356 (768)
+..++.+++|.. .++-+.+..+++++..+ .+.++++||-+....+|+++++..
T Consensus 229 ~~~~d~~dia~sfQ~av~~~L~~kt~rAl~~~~-----~~~lvi~GGVaaN~~LR~~l~~~~ 285 (342)
T COG0533 229 LNEEDKEDIAASFQEAVFDMLVEKTERALKHTG-----KKELVIAGGVAANSRLREMLEEMC 285 (342)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCEEEEeccHHHhHHHHHHHHHHH
Confidence 334455556554 44555566677777665 556999999999999999999876
No 164
>PF11593 Med3: Mediator complex subunit 3 fungal; InterPro: IPR020998 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents the subunit Med3, which is a physical target for Cyc8-Tup1, a yeast transcriptional co-repressor []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=62.15 E-value=39 Score=35.98 Aligned_cols=50 Identities=14% Similarity=0.287 Sum_probs=41.0
Q ss_pred HHHHHHHHHhhcCCCccHHHHHHHHHHHHHhHhHHHHhhHhHHHHHHHHHHH
Q 004211 617 NLRDTEEWLYEDGDDESENVYAERLEDLKKLVDPIEGRYKDEEARAQATGAL 668 (768)
Q Consensus 617 ~l~~~~~WL~~~g~~a~~~~~~~kl~~L~~~~~pi~~R~~e~~~rp~a~~~l 668 (768)
.|+++|+||-++ +. +++.+.+++.+-++.+-||-.++.|+-..=..|+.+
T Consensus 9 ~LeeLe~kLa~~-d~-~Kd~V~~~I~ea~~sILPlRL~FNeFi~tma~Ie~~ 58 (379)
T PF11593_consen 9 KLEELEEKLASN-DN-SKDSVMDKISEAQDSILPLRLQFNEFIQTMANIEEM 58 (379)
T ss_pred cHHHHHHHHhcC-Cc-hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhcc
Confidence 689999999854 33 999999999999999999999999876655555444
No 165
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=61.94 E-value=2e+02 Score=29.72 Aligned_cols=118 Identities=18% Similarity=0.261 Sum_probs=56.6
Q ss_pred HHHHhhHHHHHHHHHHHHhhHhhccCCHHHHHHHHHHHHHHHHHHhhc-----CC----CccHHHHHHHHHHHHHhHhHH
Q 004211 581 KDRKNALESYVYEMRDKISNIYRSFATESEREGISRNLRDTEEWLYED-----GD----DESENVYAERLEDLKKLVDPI 651 (768)
Q Consensus 581 ~~akN~LEs~iy~~r~~l~~~~~~~~t~~e~~~l~~~l~~~~~WL~~~-----g~----~a~~~~~~~kl~~L~~~~~pi 651 (768)
..+..+.+.++=+||.+=-. -....-+.|.......|+.+..|+... +- .-...+|..||.+|+.+.+-.
T Consensus 126 ~~~l~ea~~mL~emr~r~f~-~~~~~Ae~El~~A~~LL~~v~~~~~~~~~~~~~l~~~i~~~L~~~~~kL~Dl~~~l~eA 204 (264)
T PF06008_consen 126 QRALAEAQRMLEEMRKRDFT-PQRQNAEDELKEAEDLLSRVQKWFQKPQQENESLAEAIRDDLNDYNAKLQDLRDLLNEA 204 (264)
T ss_pred HHHHHHHHHHHHHHHhccch-hHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555544100 012233566677777777777776321 10 012346666666666666655
Q ss_pred HHhhHhHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHHHH
Q 004211 652 EGRYKDEEARAQATGALLKCAMDYRKVVEAHSLPSKVRDAVIDECSKAEEWLRE 705 (768)
Q Consensus 652 ~~R~~e~~~rp~a~~~l~~~l~~~~~~~~~~~~~~~e~~~v~~~~~~~~~Wl~~ 705 (768)
.....+....-.+.......+..-...+ .+....+...|.+...+|.+
T Consensus 205 ~~~~~ea~~ln~~n~~~l~~~~~k~~~l------~~~~~~~~~~L~~a~~~L~~ 252 (264)
T PF06008_consen 205 QNKTREAEDLNRANQKNLEDLEKKKQEL------SEQQNEVSETLKEAEDLLDQ 252 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHH
Confidence 5555555444444333332222222222 23334455555555555554
No 166
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=61.79 E-value=62 Score=37.91 Aligned_cols=68 Identities=22% Similarity=0.322 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhC--CCChhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccHHHHHHHHHHHHHHh
Q 004211 660 ARAQATGALLKCAMDYRKVVEAH--SLPSKVRDAVIDECSKAEEWLREKVTQQDSLPKDADPILWSTEIKRKSEALDLTC 737 (768)
Q Consensus 660 ~rp~a~~~l~~~l~~~~~~~~~~--~~~~~e~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~ 737 (768)
.+-++.+.+.+.+...+..+... .+++++. .+.+++...||.+....-. ..++..|+++|++.+
T Consensus 528 ~~~e~kn~lE~~i~~~r~~l~~~~~~~~~~~~---~~~l~~~~~wl~~~~~~~~-----------~~e~~~kl~~L~~~~ 593 (602)
T PF00012_consen 528 ERAEAKNELESYIYELRDKLEEDKDFVSEEEK---KKKLKETSDWLEDNGEDAD-----------KEEYKEKLEELKKVI 593 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCGGGSTHHHH---HHHHHHHHHHHHHHTTTSH-----------HHHHHHHHHHHHHHH
T ss_pred hccccHHHHHHHHHHHHHHHHhhhccCCHHHH---HHHHHHHHHHHHhhccCCC-----------HHHHHHHHHHHHHHH
Confidence 34445555666666666666221 2555555 6788889999999764222 689999999999999
Q ss_pred hhhc
Q 004211 738 KCIM 741 (768)
Q Consensus 738 ~~i~ 741 (768)
++|.
T Consensus 594 ~~i~ 597 (602)
T PF00012_consen 594 EPIK 597 (602)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9886
No 167
>cd02640 R3H_NRF R3H domain of the NF-kappaB-repression factor (NRF). NRF is a nuclear inhibitor of NF-kappaB proteins that can silence the IFNbeta promoter via binding to a negative regulatory element (NRE). Beside R3H NRF also contains a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=61.14 E-value=25 Score=27.20 Aligned_cols=41 Identities=17% Similarity=0.085 Sum_probs=31.6
Q ss_pred HHHHHhhccCCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCc
Q 004211 127 KQITEKNIKIPISNCVIGVPCYLTDVQRRAYLDAATIAGLKP 168 (768)
Q Consensus 127 ~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~AGl~~ 168 (768)
.+....+.... ....++.|+.++..+|..+-+.|+..||..
T Consensus 5 ~~~i~~F~~s~-~~~~l~f~p~lt~~eR~~vH~~a~~~gL~s 45 (60)
T cd02640 5 RQIIQNYAHSD-DIRDMVFSPEFSKEERALIHQIAQKYGLKS 45 (60)
T ss_pred HHHHHHHHcCC-ccceEEcCCCCCHHHHHHHHHHHHHcCCce
Confidence 33444444322 467789999999999999999999999975
No 168
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=61.11 E-value=24 Score=35.01 Aligned_cols=54 Identities=15% Similarity=0.270 Sum_probs=33.8
Q ss_pred CCCcEEEEEEeCCceEEEEEEEeeCC-eEEEEEEeCCCC---CchhhHHHHHHHHHHHHH
Q 004211 192 VGPTYVVFVDIGHCDTQVCVASYENG-HMKILSHAFDES---LGGRDFDEVLSSYFAAQF 247 (768)
Q Consensus 192 ~~~~~vlv~D~GggT~dvsv~~~~~~-~~~vl~~~~~~~---lGG~~~d~~l~~~l~~~~ 247 (768)
.+...+|++|+||.++-+++|++.++ .+++....+..+ .-|.. ..|++|+++.+
T Consensus 60 ~E~G~~LalDlGGTnlRv~~V~L~g~~~~~~~~~~~~ip~~~~~~~~--~~lFd~ia~~i 117 (206)
T PF00349_consen 60 NEKGDFLALDLGGTNLRVALVELSGNGKVEIEQEKYKIPEELMNGSG--EELFDFIADCI 117 (206)
T ss_dssp TTEEEEEEEEESSSSEEEEEEEEESSSEEEEEEEEEE--HHHHTSBH--HHHHHHHHHHH
T ss_pred CCCceEEEEeecCcEEEEEEEEEcCCCCceeeeccccCChHHhcCCc--ccHHHHHHHHH
Confidence 34567999999999999999999876 444433322222 11111 55667766544
No 169
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=60.33 E-value=2.1e+02 Score=29.36 Aligned_cols=89 Identities=16% Similarity=0.197 Sum_probs=54.1
Q ss_pred eCCCCCHHHHHHHHHHHHH---cCCCceeeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEeeCCeEEE
Q 004211 145 VPCYLTDVQRRAYLDAATI---AGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKI 221 (768)
Q Consensus 145 VPa~~~~~qr~~l~~Aa~~---AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~v 221 (768)
+|.+|+ .|+.|+.. ++-. ..+++.-.||+....++- .....||+|+|-|++..+++. .+.+.-
T Consensus 186 iPe~Ft-----RMraaa~sal~~~t~-av~mDskfaav~gal~dp------aa~palvVd~GngHttaalvd--edRI~g 251 (342)
T COG4012 186 IPESFT-----RMRAAAMSALSAGTD-AVAMDSKFAAVMGALVDP------AADPALVVDYGNGHTTAALVD--EDRIVG 251 (342)
T ss_pred CchhHH-----HHHHHHHHHHhcCce-EEEEcchhHhhhhcccCc------ccCceEEEEccCCceEEEEec--CCeEEE
Confidence 566665 34443333 2333 456666667666555543 234799999999999999875 345554
Q ss_pred EEEeCCCCCchhhHHHHHHHHHHHHH
Q 004211 222 LSHAFDESLGGRDFDEVLSSYFAAQF 247 (768)
Q Consensus 222 l~~~~~~~lGG~~~d~~l~~~l~~~~ 247 (768)
+...-...+.-..|-..|.++..-++
T Consensus 252 v~EHHT~~Lspekled~I~rf~~GeL 277 (342)
T COG4012 252 VYEHHTIRLSPEKLEDQIIRFVEGEL 277 (342)
T ss_pred EeecccccCCHHHHHHHHHHHHhccc
Confidence 44444566666666666665555443
No 170
>KOG1385 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=60.29 E-value=27 Score=37.92 Aligned_cols=77 Identities=14% Similarity=0.285 Sum_probs=43.9
Q ss_pred eEecHHHHHHHHHHHHHHHHHhhccCCCC-eEEEEeCCCCCHHHHHHHHHHHHHcCCCceeeccchHHH--HHHhhhccc
Q 004211 111 HKFTPVQILGMLLSNLKQITEKNIKIPIS-NCVIGVPCYLTDVQRRAYLDAATIAGLKPLRLMHDCTAT--ALGYGIYKT 187 (768)
Q Consensus 111 ~~~~~eel~a~~L~~l~~~a~~~~~~~~~-~~VitVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aa--al~y~~~~~ 187 (768)
..+.+.+-...+|+.+++..++...-++. ++ ++| +.=.+|..-| .++|....
T Consensus 152 LRlL~~~ka~~IL~aVre~l~~~s~f~v~~d~-VsI-----------------------m~GtdEGv~aWiTiN~Llg~- 206 (453)
T KOG1385|consen 152 LRLLPGSKADNILQAVRELLKNDSPFPVVEDA-VSI-----------------------MDGTDEGVYAWITINYLLGT- 206 (453)
T ss_pred cccCChhHHHHHHHHHHHHHhccCCccccCCc-eee-----------------------ccCcccceeeeeehhhhhcc-
Confidence 45778888899999999887633221111 11 111 1111222211 23454332
Q ss_pred CCCCCCCcEEEEEEeCCceEEEEEEE
Q 004211 188 DFSNVGPTYVVFVDIGHCDTQVCVAS 213 (768)
Q Consensus 188 ~~~~~~~~~vlv~D~GggT~dvsv~~ 213 (768)
+.......+.++|+|||+|+++..-
T Consensus 207 -L~~~~~~tvgv~DLGGGSTQi~f~p 231 (453)
T KOG1385|consen 207 -LGAPGHRTVGVVDLGGGSTQITFLP 231 (453)
T ss_pred -cCCCCCCceEEEEcCCceEEEEEec
Confidence 2223367899999999999998765
No 171
>PLN02914 hexokinase
Probab=60.18 E-value=58 Score=36.90 Aligned_cols=58 Identities=19% Similarity=0.163 Sum_probs=34.7
Q ss_pred CHHHHHHHHHHHHHcCC--CceeeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEe
Q 004211 150 TDVQRRAYLDAATIAGL--KPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASY 214 (768)
Q Consensus 150 ~~~qr~~l~~Aa~~AGl--~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~ 214 (768)
...-.+.|.+|.+.-|+ ++..|+|+.+|..++.++.. +...+=+=+|-||=-+.+-++
T Consensus 204 G~DVv~lL~~Al~r~~l~v~v~AivNDTVGTL~a~aY~~-------~~~~iGlIlGTGtNacY~E~~ 263 (490)
T PLN02914 204 GKDVVACLNEAMERQGLDMRVSALVNDTVGTLAGARYWD-------DDVMVAVILGTGTNACYVERT 263 (490)
T ss_pred CchHHHHHHHHHHHcCCCceEEEEEEcCHHHHHhhhcCC-------CCceEEEEEECCeeeEEEeec
Confidence 33344556666655554 57889999999888765543 223333335777665555443
No 172
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=59.48 E-value=6.4 Score=41.77 Aligned_cols=19 Identities=26% Similarity=0.417 Sum_probs=17.2
Q ss_pred cEEEEEEeCCceEEEEEEE
Q 004211 195 TYVVFVDIGHCDTQVCVAS 213 (768)
Q Consensus 195 ~~vlv~D~GggT~dvsv~~ 213 (768)
.+++++||||.|||++++.
T Consensus 128 ~~~I~~DmGGTTtDi~~i~ 146 (318)
T TIGR03123 128 PECLFVDMGSTTTDIIPII 146 (318)
T ss_pred CCEEEEEcCccceeeEEec
Confidence 4599999999999999986
No 173
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=59.00 E-value=4.1e+02 Score=32.44 Aligned_cols=49 Identities=16% Similarity=0.188 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccHHHHHHHHHHHHHHhhhhc
Q 004211 687 KVRDAVIDECSKAEEWLREKVTQQDSLPKDADPILWSTEIKRKSEALDLTCKCIM 741 (768)
Q Consensus 687 ~e~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~~~i~ 741 (768)
..+++|.+.+.+.+.-|... .|+|.+-+=+-+....++..|++..+-|+
T Consensus 328 ~~l~~~~~ki~e~~~EL~~I------~Pky~~l~~ee~~~~~rl~~l~~~~~~l~ 376 (1200)
T KOG0964|consen 328 HVLQKVKDKIEEKKDELSKI------EPKYNSLVDEEKRLKKRLAKLEQKQRDLL 376 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHh------hhHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 34445555544444444433 23344333334555555555555544444
No 174
>KOG2708 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=58.83 E-value=1.1e+02 Score=30.50 Aligned_cols=60 Identities=15% Similarity=0.237 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCcCEEEEecCCCChHHHHHHHHhhcC---CCCCCcCCchhHHHhhHH
Q 004211 310 SLLERMRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFN---REPGRTINASECVARGCA 375 (768)
Q Consensus 310 ~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~fg---~~v~~~~n~~eava~GAa 375 (768)
.+|.-+.+.-++++...+ -+.|++|||-+..-.+|++...... -.+. .-+-..|+--|+-
T Consensus 237 tvFamLVEiTERAMAh~~-----s~evLIVGGVGCN~RLQeMM~~Mc~eRgg~~f-aTDeRfCIDNG~M 299 (336)
T KOG2708|consen 237 TVFAMLVEITERAMAHCG-----SKEVLIVGGVGCNERLQEMMAIMCSERGGKLF-ATDERFCIDNGVM 299 (336)
T ss_pred HHHHHHHHHHHHHHhhcC-----CCcEEEEecccccHHHHHHHHHHHHhcCCceE-ecccceeeeCchH
Confidence 344445555566665544 3569999999999999999988873 2222 2233445555554
No 175
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=58.01 E-value=7.8 Score=44.63 Aligned_cols=21 Identities=14% Similarity=0.264 Sum_probs=18.4
Q ss_pred eEEEEEcCccceEEEEEEcCC
Q 004211 2 SVVGFDIGNENCVIAAVKQGG 22 (768)
Q Consensus 2 ~viGID~GTt~s~va~~~~g~ 22 (768)
.++|||+|||++++++++..+
T Consensus 4 ~~lgID~GTts~Ka~l~d~~G 24 (520)
T PRK10939 4 YLMALDAGTGSIRAVIFDLNG 24 (520)
T ss_pred EEEEEecCCCceEEEEECCCC
Confidence 389999999999999998654
No 176
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=57.74 E-value=11 Score=33.88 Aligned_cols=20 Identities=30% Similarity=0.552 Sum_probs=17.2
Q ss_pred EEEEEcCccceEEEEEEcCC
Q 004211 3 VVGFDIGNENCVIAAVKQGG 22 (768)
Q Consensus 3 viGID~GTt~s~va~~~~g~ 22 (768)
|++||+|++.++++++..+.
T Consensus 1 i~~iDiGs~~~~~~i~~~~~ 20 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDGS 20 (120)
T ss_dssp EEEEEE-SSSEEEEEEETTE
T ss_pred CEEEEcCCCcEEEEEEEeCC
Confidence 68999999999999998775
No 177
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=56.90 E-value=1.1e+02 Score=36.22 Aligned_cols=44 Identities=18% Similarity=0.114 Sum_probs=36.9
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccHHHHHHHHHHHHHHhhhhc
Q 004211 683 SLPSKVRDAVIDECSKAEEWLREKVTQQDSLPKDADPILWSTEIKRKSEALDLTCKCIM 741 (768)
Q Consensus 683 ~~~~~e~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~~~i~ 741 (768)
.++.++++.+...+++++.||+. + ...+++.+.++|++.+.++.
T Consensus 553 ~~~~~~~~~~~~~l~~~~~~l~~----~-----------d~~~~~~~~~~l~~~~~~~~ 596 (616)
T PRK05183 553 LLSAAERAAIDAAMAALREVAQG----D-----------DADAIEAAIKALDKATQEFA 596 (616)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhc----C-----------CHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999964 1 22788999999999888877
No 178
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=56.73 E-value=10 Score=36.18 Aligned_cols=37 Identities=19% Similarity=0.280 Sum_probs=0.0
Q ss_pred CeEEEEEcCccceEEEEEEcCCceEEEeCCCCCccceE
Q 004211 1 MSVVGFDIGNENCVIAAVKQGGMLDVLLNDESKRETPT 38 (768)
Q Consensus 1 m~viGID~GTt~s~va~~~~g~~~~ii~n~~~~r~~Ps 38 (768)
|.|+|||-|++++..|++...+ -.+..-..|--++++
T Consensus 2 m~iLGIDPgl~~tG~avi~~~~-~~~~~~~~G~i~t~~ 38 (164)
T PRK00039 2 MRILGIDPGLRRTGYGVIEVEG-RRLSYVASGVIRTPS 38 (164)
T ss_pred CEEEEEccccCceeEEEEEecC-CeEEEEEeeEEECCC
No 179
>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=55.96 E-value=2.7e+02 Score=29.31 Aligned_cols=64 Identities=13% Similarity=0.117 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCcCEEEEecCCCCh-HHHHHHHHhhcCCCCCCcCCchhHHHhhHHHHhhH
Q 004211 310 SLLERMRIPCQKALAGSGLNVEKIHSVELVGSGSRI-PAISRMLNSLFNREPGRTINASECVARGCALQCAM 380 (768)
Q Consensus 310 ~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~sri-p~v~~~l~~~fg~~v~~~~n~~eava~GAa~~a~~ 380 (768)
.++++....|...++...+ ......+.|.||.... |++.....+....+. ..-+..||.+.|..
T Consensus 227 ~Il~~aa~~i~~~~~~l~~-~~g~~~l~l~GG~~~~~~~~~~~~~~~l~~~~------~~D~~~GA~~~A~~ 291 (301)
T COG2971 227 RILKEAAAYIATLLEALSI-FNGSEKLSLLGGLAPSYPYYLSLFRRALLVPP------IGDALSGAVLLALG 291 (301)
T ss_pred HHHHHHHHHHHHHHHHHhc-ccCCceEEEeccccccchhhHHHHHHHhcCCc------cccHHHHHHHHHHH
Confidence 4566666666666665432 2245679999998887 888877777664322 55667888877753
No 180
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=55.56 E-value=1.2e+02 Score=35.63 Aligned_cols=44 Identities=23% Similarity=0.216 Sum_probs=36.1
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccHHHHHHHHHHHHHHhhhhc
Q 004211 683 SLPSKVRDAVIDECSKAEEWLREKVTQQDSLPKDADPILWSTEIKRKSEALDLTCKCIM 741 (768)
Q Consensus 683 ~~~~~e~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~~~i~ 741 (768)
.++++++..+...+++++.||.+. | ..+++.+.+.|++.+..+.
T Consensus 537 ~~~~~~~~~~~~~l~~~~~~l~~~-----------~----~~~~~~~~~~l~~~~~~~~ 580 (599)
T TIGR01991 537 LLSEDERAAIDAAMEALQKALQGD-----------D----ADAIKAAIEALEEATDNFA 580 (599)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcC-----------C----HHHHHHHHHHHHHHHHHHH
Confidence 378999999999999999999651 2 2688888888888887766
No 181
>PLN02295 glycerol kinase
Probab=55.10 E-value=9.2 Score=43.94 Aligned_cols=20 Identities=15% Similarity=0.180 Sum_probs=17.7
Q ss_pred EEEEEcCccceEEEEEEcCC
Q 004211 3 VVGFDIGNENCVIAAVKQGG 22 (768)
Q Consensus 3 viGID~GTt~s~va~~~~g~ 22 (768)
++|||+|||++++++++..+
T Consensus 2 vlgID~GTts~Ka~l~d~~G 21 (512)
T PLN02295 2 VGAIDQGTTSTRFIIYDRDA 21 (512)
T ss_pred EEEEecCCCceEEEEECCCC
Confidence 79999999999999997544
No 182
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=54.99 E-value=2.9e+02 Score=29.51 Aligned_cols=17 Identities=0% Similarity=-0.091 Sum_probs=10.2
Q ss_pred CCChhhHHHHHHHHHHH
Q 004211 683 SLPSKVRDAVIDECSKA 699 (768)
Q Consensus 683 ~~~~~e~~~v~~~~~~~ 699 (768)
.+|..|+..+.+.++..
T Consensus 272 ~~t~~Ev~~Lk~~~~~L 288 (325)
T PF08317_consen 272 GWTRSEVKRLKAKVDAL 288 (325)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 36666766666665443
No 183
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=54.78 E-value=9.5 Score=44.16 Aligned_cols=20 Identities=20% Similarity=0.507 Sum_probs=17.7
Q ss_pred EEEEEcCccceEEEEEEcCC
Q 004211 3 VVGFDIGNENCVIAAVKQGG 22 (768)
Q Consensus 3 viGID~GTt~s~va~~~~g~ 22 (768)
++|||+|||++++++++..+
T Consensus 2 ~lgID~GTts~Ka~l~d~~G 21 (541)
T TIGR01315 2 YIGVDVGTGSARACIIDSTG 21 (541)
T ss_pred EEEEEecCcCEEEEEEcCCC
Confidence 79999999999999997544
No 184
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=54.31 E-value=11 Score=43.68 Aligned_cols=21 Identities=29% Similarity=0.390 Sum_probs=18.2
Q ss_pred eEEEEEcCccceEEEEEE-cCC
Q 004211 2 SVVGFDIGNENCVIAAVK-QGG 22 (768)
Q Consensus 2 ~viGID~GTt~s~va~~~-~g~ 22 (768)
.++|||+|||.+++++++ ..+
T Consensus 2 ~~lgiD~GTss~Ka~l~d~~~G 23 (536)
T TIGR01234 2 YAIGVDFGTLSGRALAVDVATG 23 (536)
T ss_pred eEEEEecCCCceEEEEEECCCC
Confidence 489999999999999998 444
No 185
>PRK13410 molecular chaperone DnaK; Provisional
Probab=53.66 E-value=1.3e+02 Score=35.89 Aligned_cols=22 Identities=18% Similarity=0.280 Sum_probs=19.1
Q ss_pred CChhhHHHHHHHHHHHHHHHHH
Q 004211 684 LPSKVRDAVIDECSKAEEWLRE 705 (768)
Q Consensus 684 ~~~~e~~~v~~~~~~~~~Wl~~ 705 (768)
++++++..+...+++++.||.+
T Consensus 556 ~~~~~~~~~~~~l~~~~~wL~~ 577 (668)
T PRK13410 556 FAERQRRAVESAMRDVQDSLEQ 577 (668)
T ss_pred CCHHHHHHHHHHHHHHHHHHhc
Confidence 6888899999999999999965
No 186
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=53.05 E-value=11 Score=40.76 Aligned_cols=21 Identities=24% Similarity=0.493 Sum_probs=18.5
Q ss_pred eEEEEEcCccceEEEEEEcCC
Q 004211 2 SVVGFDIGNENCVIAAVKQGG 22 (768)
Q Consensus 2 ~viGID~GTt~s~va~~~~g~ 22 (768)
.++|||+|+|.+++.+++.++
T Consensus 3 y~lGIDIGSTsTKaVVmd~~g 23 (432)
T TIGR02259 3 CFVGIDLGSTTTKAVLMDDKG 23 (432)
T ss_pred eEEEEEcCchhEEEEEEcCCC
Confidence 379999999999999988764
No 187
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=51.90 E-value=11 Score=43.03 Aligned_cols=21 Identities=14% Similarity=0.328 Sum_probs=18.0
Q ss_pred eEEEEEcCccceEEEEEEcCC
Q 004211 2 SVVGFDIGNENCVIAAVKQGG 22 (768)
Q Consensus 2 ~viGID~GTt~s~va~~~~g~ 22 (768)
.++|||+|||++++++++..+
T Consensus 2 ~~lgiDiGtt~iKa~l~d~~g 22 (493)
T TIGR01311 2 YILAIDQGTTSSRAIVFDKDG 22 (493)
T ss_pred eEEEEecCCCceEEEEECCCC
Confidence 379999999999999997544
No 188
>PRK00047 glpK glycerol kinase; Provisional
Probab=51.73 E-value=11 Score=43.06 Aligned_cols=21 Identities=14% Similarity=0.325 Sum_probs=18.0
Q ss_pred eEEEEEcCccceEEEEEEcCC
Q 004211 2 SVVGFDIGNENCVIAAVKQGG 22 (768)
Q Consensus 2 ~viGID~GTt~s~va~~~~g~ 22 (768)
.+||||+|||++++++++..+
T Consensus 6 ~~lgiD~GTts~Ka~l~d~~g 26 (498)
T PRK00047 6 YILALDQGTTSSRAIIFDHDG 26 (498)
T ss_pred EEEEEecCCCceEEEEECCCC
Confidence 379999999999999997544
No 189
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=51.05 E-value=3.3e+02 Score=28.95 Aligned_cols=32 Identities=13% Similarity=0.055 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHh-CCCChhhHHHHHHHHHHH
Q 004211 668 LLKCAMDYRKVVEA-HSLPSKVRDAVIDECSKA 699 (768)
Q Consensus 668 l~~~l~~~~~~~~~-~~~~~~e~~~v~~~~~~~ 699 (768)
++..|+.++...+. ..+|..|+..+.+.+...
T Consensus 251 ~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~L 283 (312)
T smart00787 251 LNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLL 283 (312)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 33444444443322 336777766666655443
No 190
>COG4296 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.99 E-value=45 Score=29.95 Aligned_cols=23 Identities=30% Similarity=0.645 Sum_probs=19.5
Q ss_pred HHHHHHhhcCCCccHHHHHHHHH
Q 004211 620 DTEEWLYEDGDDESENVYAERLE 642 (768)
Q Consensus 620 ~~~~WL~~~g~~a~~~~~~~kl~ 642 (768)
..++||++++...|.++|++|..
T Consensus 90 knE~WleEDe~~iTpE~fk~Rm~ 112 (156)
T COG4296 90 KNEDWLEEDEQPITPESFKERMA 112 (156)
T ss_pred chhhhhhccCCccCHHHHHHHhh
Confidence 45889999998999999988764
No 191
>PRK13321 pantothenate kinase; Reviewed
Probab=49.11 E-value=16 Score=37.72 Aligned_cols=20 Identities=20% Similarity=0.358 Sum_probs=17.7
Q ss_pred EEEEEcCccceEEEEEEcCC
Q 004211 3 VVGFDIGNENCVIAAVKQGG 22 (768)
Q Consensus 3 viGID~GTt~s~va~~~~g~ 22 (768)
+++||+|.|++++|++.++.
T Consensus 2 iL~IDIGnT~ik~gl~~~~~ 21 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFDGDR 21 (256)
T ss_pred EEEEEECCCeEEEEEEECCE
Confidence 68999999999999998554
No 192
>KOG0517 consensus Beta-spectrin [Cytoskeleton]
Probab=48.85 E-value=5.5e+02 Score=33.90 Aligned_cols=126 Identities=18% Similarity=0.298 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHHHHhhc---CCCccHHHHHHHHHHHHHhHhHHHHhhHhHHHHHHH-----------HH----HHHHH
Q 004211 610 EREGISRNLRDTEEWLYED---GDDESENVYAERLEDLKKLVDPIEGRYKDEEARAQA-----------TG----ALLKC 671 (768)
Q Consensus 610 e~~~l~~~l~~~~~WL~~~---g~~a~~~~~~~kl~~L~~~~~pi~~R~~e~~~rp~a-----------~~----~l~~~ 671 (768)
|-..+..=+.+-+.||.+- ..-.+.++++.|.+.|..-.+-...|+.+-...... |. .|++.
T Consensus 852 e~d~~ElWi~Eke~~L~~m~~~~~~E~vev~q~rFe~l~~eM~~~~~~v~~Vn~~a~qL~~~ghp~sd~I~~~Q~~Ln~r 931 (2473)
T KOG0517|consen 852 ECDACELWIKEKEKWLATMSPPDSLEDVEVMQHRFEKLEQEMNTLAGRVAEVNDIARQLLEVGHPNSDEILARQDKLNQR 931 (2473)
T ss_pred hccHHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Confidence 3455666677777888752 223455666666666655555444444442221111 11 11111
Q ss_pred HHHHHHHHHhCC---CChhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccHHHHHHHHHHHHH
Q 004211 672 AMDYRKVVEAHS---LPSKVRDAVIDECSKAEEWLREKVTQQDSLPKDADPILWSTEIKRKSEALDL 735 (768)
Q Consensus 672 l~~~~~~~~~~~---~~~~e~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~ 735 (768)
-..++..+.+.. -....+....-.|.++..|+.++...+..++.-.+-.-.+-.+..++..+++
T Consensus 932 W~~l~~l~~qk~~~L~~a~~V~~f~~eC~et~~wi~dK~~~~e~t~~~~~Dl~gv~alqrrL~~lEr 998 (2473)
T KOG0517|consen 932 WQQLRELVDQKKVALESALRVETFHLECEETRVWIRDKTRVLESTDRLGNDLAGVMALQRRLQGLER 998 (2473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccCcchHHHHHHHHHHhhhhh
Confidence 122222221100 2234567777889999999999977666555444443444444444444444
No 193
>KOG0678 consensus Actin-related protein Arp2/3 complex, subunit Arp3 [Cytoskeleton]
Probab=48.84 E-value=2.2e+02 Score=30.12 Aligned_cols=100 Identities=16% Similarity=0.087 Sum_probs=58.0
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHHHcCCCceeeccchHH-HHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEeeCCe
Q 004211 140 NCVIGVPCYLTDVQRRAYLDAATIAGLKPLRLMHDCTA-TALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGH 218 (768)
Q Consensus 140 ~~VitVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~A-aal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~ 218 (768)
...+|-|.--.+.-|.-+....-. -++|..|.---.| .||+..+...... +..-.-+|+|-|-|-|-+-.+. .|.
T Consensus 108 ~fLlteppln~penreytaeImfE-sfnvpglyiAVqavLALaaswts~~v~-er~ltG~VidsGdgvThvipva--Egy 183 (415)
T KOG0678|consen 108 YFLLTEPPLNQPENREYTAEIMFE-SFNVPGLYIAVQAVLALAASWTSRQVG-ERFLTGIVIDSGDGVTHVIPVA--EGY 183 (415)
T ss_pred eEEecCCCCCCchhhHHHHHhhhh-hccCchHHHHHHHHHHHHHHHHHhhhh-hheeeeEEEecCCCeeEEEEee--cce
Confidence 467888888888877766554321 2444443211111 1233333332211 2234458999999988776654 333
Q ss_pred EEEEEEeCCCCCchhhHHHHHHHHHH
Q 004211 219 MKILSHAFDESLGGRDFDEVLSSYFA 244 (768)
Q Consensus 219 ~~vl~~~~~~~lGG~~~d~~l~~~l~ 244 (768)
+ +.++-....+.|++++.-+...+.
T Consensus 184 V-igScik~iPiagrdiT~fiQ~llR 208 (415)
T KOG0678|consen 184 V-IGSCIKHIPIAGRDITYFIQQLLR 208 (415)
T ss_pred E-EeeeeccccccCCchhHHHHHHhh
Confidence 2 444445788999999987776664
No 194
>PRK13318 pantothenate kinase; Reviewed
Probab=48.59 E-value=16 Score=37.77 Aligned_cols=20 Identities=30% Similarity=0.581 Sum_probs=17.6
Q ss_pred EEEEEcCccceEEEEEEcCC
Q 004211 3 VVGFDIGNENCVIAAVKQGG 22 (768)
Q Consensus 3 viGID~GTt~s~va~~~~g~ 22 (768)
+++||+|.|+++++++..+.
T Consensus 2 iL~IDIGnT~iK~al~d~g~ 21 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYEGGK 21 (258)
T ss_pred EEEEEECCCcEEEEEEECCE
Confidence 68999999999999998544
No 195
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=48.56 E-value=4.2e+02 Score=33.03 Aligned_cols=38 Identities=13% Similarity=0.262 Sum_probs=22.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHhhHhhccCCHHHHHHHHHH
Q 004211 577 MERTKDRKNALESYVYEMRDKISNIYRSFATESEREGISRN 617 (768)
Q Consensus 577 ~~~~~~akN~LEs~iy~~r~~l~~~~~~~~t~~e~~~l~~~ 617 (768)
+...+++..+|+.+|-.+|+.|.. +-.++++.+.+.+.
T Consensus 1463 ~~q~~~s~~el~~Li~~v~~Flt~---~~adp~si~~vA~~ 1500 (1758)
T KOG0994|consen 1463 RSQMEESNRELRNLIQQVRDFLTQ---PDADPDSIEEVAEE 1500 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC---CCCCHHHHHHHHHH
Confidence 334455666677777777777753 34555555555443
No 196
>PLN02377 3-ketoacyl-CoA synthase
Probab=48.34 E-value=41 Score=38.22 Aligned_cols=67 Identities=12% Similarity=0.136 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEE-ecCCCChHHHHHHHHhhcCCC--C-CCcCCchhHH
Q 004211 304 FEKLSSSLLERMRIPCQKALAGSGLNVEKIHSVEL-VGSGSRIPAISRMLNSLFNRE--P-GRTINASECV 370 (768)
Q Consensus 304 fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~L-vGG~srip~v~~~l~~~fg~~--v-~~~~n~~eav 370 (768)
++...++...-+...++++|+++|+++++|+.|+. +.|....|.+-.+|.+.+|.+ + ..+++..-|.
T Consensus 165 ~~~~~~ea~~l~~~A~~~aL~kaGi~p~dID~LVv~cS~~~~~PSlaa~V~~~LGlr~~v~afdL~gmGCs 235 (502)
T PLN02377 165 MAAAREEAEQVMFGALDNLFANTNVNPKDIGILVVNCSLFNPTPSLSAMIVNKYKLRGNIRSFNLGGMGCS 235 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCcHHHHHHHHhCCCCCCeEEecccchhh
Confidence 44444555556677888999999999999999987 444556899999999999843 2 3444533333
No 197
>PLN02902 pantothenate kinase
Probab=47.52 E-value=1.9e+02 Score=34.95 Aligned_cols=47 Identities=13% Similarity=0.053 Sum_probs=31.4
Q ss_pred CcCEEEEecCCCC-----hHHHHHHHHhhcC---CCCCCcCCchhHHHhhHHHHhh
Q 004211 332 KIHSVELVGSGSR-----IPAISRMLNSLFN---REPGRTINASECVARGCALQCA 379 (768)
Q Consensus 332 ~i~~V~LvGG~sr-----ip~v~~~l~~~fg---~~v~~~~n~~eava~GAa~~a~ 379 (768)
.++.|+++|+.-| |..+...+. +++ .+.....+-....|+||.+...
T Consensus 346 ~ikrIvF~G~fIr~h~~tm~~ls~Ai~-fwSkg~~~a~FlrHeGylGAlGafl~~~ 400 (876)
T PLN02902 346 GLKRIFFGGFFIRGHAYTMDTISFAVH-FWSKGEAQAMFLRHEGFLGALGAFMSYE 400 (876)
T ss_pred CCCEEEEecceecCCcchHHHHHHHHH-HhcCCceEEEEecccchhHHHHHHhcCC
Confidence 6788999998766 334444444 442 3445556677888999986654
No 198
>PLN02596 hexokinase-like
Probab=47.33 E-value=74 Score=36.05 Aligned_cols=54 Identities=20% Similarity=0.202 Sum_probs=33.0
Q ss_pred HHHHHHHHHHcCC--CceeeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEe
Q 004211 154 RRAYLDAATIAGL--KPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASY 214 (768)
Q Consensus 154 r~~l~~Aa~~AGl--~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~ 214 (768)
.+.+.+|...-|+ +++.++|+.+|+.++.++.. +...+=+=+|-||=-+.+-++
T Consensus 208 v~lL~~Al~r~~l~v~v~AivNDTVgTL~a~aY~~-------~~~~iG~I~GTGtNacY~E~~ 263 (490)
T PLN02596 208 VNDINRALEKHGLKIRVFALVDDTIGNLAGGRYYN-------KDTVAAVTLGMGTNAAYVEPA 263 (490)
T ss_pred HHHHHHHHHhcCCCceEEEEEEcCHHHHHhhhcCC-------CCeEEEEEEecccceEEEEEc
Confidence 3445555555555 57889999999988766543 223332336777665555544
No 199
>KOG1369 consensus Hexokinase [Carbohydrate transport and metabolism]
Probab=47.12 E-value=30 Score=38.70 Aligned_cols=63 Identities=14% Similarity=0.098 Sum_probs=45.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCCC---ceeeccchHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEee
Q 004211 146 PCYLTDVQRRAYLDAATIAGLK---PLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYE 215 (768)
Q Consensus 146 Pa~~~~~qr~~l~~Aa~~AGl~---~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~ 215 (768)
+......--+.+.+|.+.-|+. +..++|+.++..++.++.. +++++-+=+|.||--+-+.+..
T Consensus 186 ~~~~g~Dvv~~L~eal~rr~~~~i~V~AlvNDTvGtl~~~~y~~-------~~~~igvI~GTGtNacY~e~~~ 251 (474)
T KOG1369|consen 186 TDCEGEDVVRLLREAIKRRGLFDMDVVAVVNDTVGTLMTCAYED-------PNCEIGVIFGTGTNACYMEDMR 251 (474)
T ss_pred hhhhcchHHHHHHHHHHHcCCcceEEEEEEecCHHhHhhceecC-------CCcEEEEEECCCccceeeeecc
Confidence 3344445567788888888876 7889999999888765432 4667777789998877777765
No 200
>PRK04123 ribulokinase; Provisional
Probab=46.44 E-value=17 Score=42.23 Aligned_cols=20 Identities=30% Similarity=0.556 Sum_probs=17.8
Q ss_pred EEEEEcCccceEEEEEEc-CC
Q 004211 3 VVGFDIGNENCVIAAVKQ-GG 22 (768)
Q Consensus 3 viGID~GTt~s~va~~~~-g~ 22 (768)
++|||+|||++++++++. ++
T Consensus 5 ~lgiD~GTts~Ka~l~d~~~g 25 (548)
T PRK04123 5 VIGLDFGTDSVRALLVDCATG 25 (548)
T ss_pred EEEEecCCCceEEEEEECCCC
Confidence 799999999999999983 54
No 201
>PRK10869 recombination and repair protein; Provisional
Probab=45.08 E-value=5.5e+02 Score=29.79 Aligned_cols=106 Identities=10% Similarity=0.071 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHhhhhhhH----HHHHHHHhhHHHHHHHHHHHHhhHhhccCCHHHHHHHHHHHHHHHHHHhhcCCCccHH
Q 004211 560 LSEAVEKEHQLVQQDLKM----ERTKDRKNALESYVYEMRDKISNIYRSFATESEREGISRNLRDTEEWLYEDGDDESEN 635 (768)
Q Consensus 560 ~~~~~~~~~~~~~~D~~~----~~~~~akN~LEs~iy~~r~~l~~~~~~~~t~~e~~~l~~~l~~~~~WL~~~g~~a~~~ 635 (768)
+..+...+..+...|... ....++...||...+.+++.+++ --..|++.+.+.+.|..+..--...| .+.+
T Consensus 246 l~~~~~~l~~~~~~d~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~---~~~dp~~l~~ie~Rl~~l~~L~rKyg--~~~~ 320 (553)
T PRK10869 246 LYSAKQLLSELIGMDSKLSGVLDMLEEALIQIQEASDELRHYLDR---LDLDPNRLAELEQRLSKQISLARKHH--VSPE 320 (553)
T ss_pred HHHHHHHHHHHhhhCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cCCCHHHHHHHHHHHHHHHHHHHHhC--CCHH
Confidence 444444555544444222 22233444444444444444432 13456666666666666665554433 3444
Q ss_pred HHHHHHHHHHHhHhHHHHhhHhHHHHHHHHHHHHHHHHHHHH
Q 004211 636 VYAERLEDLKKLVDPIEGRYKDEEARAQATGALLKCAMDYRK 677 (768)
Q Consensus 636 ~~~~kl~~L~~~~~pi~~R~~e~~~rp~a~~~l~~~l~~~~~ 677 (768)
++.+.+++++ .++.+.......++.|++.+..++.
T Consensus 321 ~~~~~~~~l~-------~eL~~L~~~e~~l~~Le~e~~~l~~ 355 (553)
T PRK10869 321 ELPQHHQQLL-------EEQQQLDDQEDDLETLALAVEKHHQ 355 (553)
T ss_pred HHHHHHHHHH-------HHHHHhhCCHHHHHHHHHHHHHHHH
Confidence 4444444443 3333333344444444444444333
No 202
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=44.21 E-value=2e+02 Score=34.16 Aligned_cols=46 Identities=4% Similarity=0.047 Sum_probs=35.9
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccHHHHHHHHHHHHHHhhhhc
Q 004211 683 SLPSKVRDAVIDECSKAEEWLREKVTQQDSLPKDADPILWSTEIKRKSEALDLTCKCIM 741 (768)
Q Consensus 683 ~~~~~e~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~~~i~ 741 (768)
.++.+++..+.+.+..++.||+. ++ . ...+++.+.++|++.+.++.
T Consensus 575 ~~~~~~~~~~~~~~~~~~~~l~~----~~-----~----~~~~~~~~~~~l~~~~~~~~ 620 (657)
T PTZ00186 575 YVSDAEKENVKTLVAELRKAMEN----PN-----V----AKDDLAAATDKLQKAVMECG 620 (657)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhc----CC-----c----CHHHHHHHHHHHHHHHHHHH
Confidence 47888899999999999999952 11 1 23688888999999888877
No 203
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=42.88 E-value=4.2e+02 Score=27.76 Aligned_cols=88 Identities=13% Similarity=0.218 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHhHhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHhCCCChhh
Q 004211 609 SEREGISRNLRDTEEWLYEDGDDESENVYAERLEDLKKLVDPIEGRYKDEEARAQATGALLKCAMDYRKVVEAHSLPSKV 688 (768)
Q Consensus 609 ~e~~~l~~~l~~~~~WL~~~g~~a~~~~~~~kl~~L~~~~~pi~~R~~e~~~rp~a~~~l~~~l~~~~~~~~~~~~~~~e 688 (768)
++|+.|.+.+.++.+= ..++..++++|......+..-.+++..-+..+..+...|.....+..+..+|.++
T Consensus 62 ~~rdeineev~elK~k---------R~ein~kl~eL~~~~~~l~e~~~~~~~~~~~~~~ler~i~~Le~~~~T~~L~~e~ 132 (294)
T COG1340 62 EERDEINEEVQELKEK---------RDEINAKLQELRKEYRELKEKRNEFNLGGRSIKSLEREIERLEKKQQTSVLTPEE 132 (294)
T ss_pred HHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHhcCCChHH
Confidence 4555565555555442 3445556666665555555555554445556666777777666665333466665
Q ss_pred HHHHHHHHHHHHHHHHH
Q 004211 689 RDAVIDECSKAEEWLRE 705 (768)
Q Consensus 689 ~~~v~~~~~~~~~Wl~~ 705 (768)
=..+...|.+...-|..
T Consensus 133 E~~lvq~I~~L~k~le~ 149 (294)
T COG1340 133 ERELVQKIKELRKELED 149 (294)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555555555555544
No 204
>cd02641 R3H_Smubp-2_like R3H domain of Smubp-2_like proteins. Smubp-2_like proteins also contain a helicase_like and an AN1-like Zinc finger domain and have been shown to bind single-stranded DNA. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA.
Probab=42.73 E-value=67 Score=24.85 Aligned_cols=29 Identities=21% Similarity=0.201 Sum_probs=26.0
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHHHcCCCc
Q 004211 140 NCVIGVPCYLTDVQRRAYLDAATIAGLKP 168 (768)
Q Consensus 140 ~~VitVPa~~~~~qr~~l~~Aa~~AGl~~ 168 (768)
...+..|+.++..||..+-+.|+..||..
T Consensus 17 ~~~l~F~p~ls~~eR~~vH~lA~~~gL~s 45 (60)
T cd02641 17 ATELEFPPTLSSHDRLLVHELAEELGLRH 45 (60)
T ss_pred cCcEECCCCCCHHHHHHHHHHHHHcCCce
Confidence 36788999999999999999999999875
No 205
>cd02639 R3H_RRM R3H domain of mainly fungal proteins which are associated with a RNA recognition motif (RRM) domain. Present in this group is the RNA-binding post-transcriptional regulator Cip2 (Csx1-interacting protein 2) involved in counteracting Csx1 function. Csx1 plays a central role in controlling gene expression during oxidative stress. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=42.35 E-value=47 Score=25.74 Aligned_cols=29 Identities=24% Similarity=0.255 Sum_probs=26.2
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHHHcCCCc
Q 004211 140 NCVIGVPCYLTDVQRRAYLDAATIAGLKP 168 (768)
Q Consensus 140 ~~VitVPa~~~~~qr~~l~~Aa~~AGl~~ 168 (768)
.-.++.|+.+++.+|+.+-..|...||..
T Consensus 17 ~~eL~Fp~~ls~~eRriih~la~~lGL~~ 45 (60)
T cd02639 17 RDELAFPSSLSPAERRIVHLLASRLGLNH 45 (60)
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHHcCCce
Confidence 56677899999999999999999999875
No 206
>PRK04863 mukB cell division protein MukB; Provisional
Probab=41.10 E-value=9.8e+02 Score=31.55 Aligned_cols=96 Identities=13% Similarity=0.107 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHhHhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhHH
Q 004211 611 REGISRNLRDTEEWLYEDGDDESENVYAERLEDLKKLVDPIEGRYKDEEARAQATGALLKCAMDYRKVVEAHSLPSKVRD 690 (768)
Q Consensus 611 ~~~l~~~l~~~~~WL~~~g~~a~~~~~~~kl~~L~~~~~pi~~R~~e~~~rp~a~~~l~~~l~~~~~~~~~~~~~~~e~~ 690 (768)
.+++...+.+..+.+... ....+..+++++.|+.-...........+.+-.........+..++.+|-...+|.+++.
T Consensus 364 Lee~eeeLeeleeeleel--eeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~~~~~~~SdEeLe 441 (1486)
T PRK04863 364 LEEQNEVVEEADEQQEEN--EARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNAE 441 (1486)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHH
Confidence 344444444444444332 223334455555555444445555555555556666666667777777722358887765
Q ss_pred HH----HHHHHHHHHHHHHHHH
Q 004211 691 AV----IDECSKAEEWLREKVT 708 (768)
Q Consensus 691 ~v----~~~~~~~~~Wl~~~~~ 708 (768)
.. .+.+.+...++.+...
T Consensus 442 ~~LenF~aklee~e~qL~elE~ 463 (1486)
T PRK04863 442 DWLEEFQAKEQEATEELLSLEQ 463 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 43 3444455555555444
No 207
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=41.09 E-value=5.2e+02 Score=33.20 Aligned_cols=74 Identities=18% Similarity=0.241 Sum_probs=41.2
Q ss_pred CCCHHHHHHHHHHHHHHhhhhhhHH-------HHHHHHhhHHHHHHHHHHHHhhHhhccCCHHHHHHHHHHHHHHHHHHh
Q 004211 554 GMTKTELSEAVEKEHQLVQQDLKME-------RTKDRKNALESYVYEMRDKISNIYRSFATESEREGISRNLRDTEEWLY 626 (768)
Q Consensus 554 ~ls~~e~~~~~~~~~~~~~~D~~~~-------~~~~akN~LEs~iy~~r~~l~~~~~~~~t~~e~~~l~~~l~~~~~WL~ 626 (768)
.+++.++..+.+...-....+..+. ++.+-.+.++..++.++..|+.--.+.-....-..+.+.+..++.|++
T Consensus 151 ~~kp~err~iiEEaaGv~~y~~r~~ea~~~L~~~~~nl~~~~~~~~el~~~l~~L~~q~~~a~~y~~l~~e~~~~~~~~~ 230 (1163)
T COG1196 151 NAKPEERRKLIEEAAGVSKYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALL 230 (1163)
T ss_pred cCCHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777777777776554433333222 223344455566666666664322233445555667777777777765
Q ss_pred h
Q 004211 627 E 627 (768)
Q Consensus 627 ~ 627 (768)
-
T Consensus 231 ~ 231 (1163)
T COG1196 231 L 231 (1163)
T ss_pred H
Confidence 4
No 208
>cd02646 R3H_G-patch R3H domain of a group of fungal and plant proteins with unknown function, who also contain a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the R3H domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=40.84 E-value=61 Score=24.81 Aligned_cols=40 Identities=18% Similarity=0.148 Sum_probs=29.4
Q ss_pred HHHHHHhhccCCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCc
Q 004211 126 LKQITEKNIKIPISNCVIGVPCYLTDVQRRAYLDAATIAGLKP 168 (768)
Q Consensus 126 l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~AGl~~ 168 (768)
+++..+.++... .-.++.|+ ++..+|..+.+.|...||..
T Consensus 4 i~~~i~~F~~~~--~~~~~fpp-m~~~~R~~vH~lA~~~~L~S 43 (58)
T cd02646 4 IKDEIEAFLLDS--RDSLSFPP-MDKHGRKTIHKLANCYNLKS 43 (58)
T ss_pred HHHHHHHHHhCC--CceEecCC-CCHHHHHHHHHHHHHcCCcc
Confidence 444444444333 45668999 89999999999999988864
No 209
>PLN02669 xylulokinase
Probab=40.50 E-value=22 Score=41.29 Aligned_cols=21 Identities=14% Similarity=0.240 Sum_probs=18.2
Q ss_pred eEEEEEcCccceEEEEEEcCC
Q 004211 2 SVVGFDIGNENCVIAAVKQGG 22 (768)
Q Consensus 2 ~viGID~GTt~s~va~~~~g~ 22 (768)
.+||||+||+.+++++++..+
T Consensus 9 ~~LGiD~GT~s~Ka~l~d~~g 29 (556)
T PLN02669 9 LFLGFDSSTQSLKATVLDSNL 29 (556)
T ss_pred eEEEEecccCCeEEEEEcCCC
Confidence 479999999999999997554
No 210
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=40.36 E-value=1.6e+02 Score=30.24 Aligned_cols=118 Identities=19% Similarity=0.088 Sum_probs=0.0
Q ss_pred chHHHHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCCchhhHHHHHHHHHHHHHhhhccc
Q 004211 174 DCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEVLSSYFAAQFKQQYDI 253 (768)
Q Consensus 174 Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~ 253 (768)
+-.++|++..... +..++|+|+|--+|-..+ ..+...+||.
T Consensus 108 DR~~n~vaA~~~~-------~~~~vVVD~GTA~Tid~v------------~~~~~~lGG~-------------------- 148 (251)
T COG1521 108 DRIANAVAAYHKY-------GKAVVVVDFGTATTIDLV------------DEGGRYLGGA-------------------- 148 (251)
T ss_pred HHHHHHHHHHHHc-------CCcEEEEEcCCeEEEEEE------------cCCCcEeeeE--------------------
Q ss_pred CccCChHHHHHHHHHHHHHhhhcCCCCeeeEEEeccccCcceEEEecHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCc
Q 004211 254 DVYTNVKASIRLRASCEKLKKVLSANAEAPLNIECLMNEKDVKGFIRREEFEKLSSSLLERMRIPCQKALAGSGLNVEKI 333 (768)
Q Consensus 254 ~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~~~i~~l~~~~d~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i 333 (768)
+......+.+-+. ...+|.-...-......+. ++..+.+...++-.....|+..+++.......=
T Consensus 149 -I~PGi~l~~~aL~-~~aa~lp~~~~~~~~~~~g-------------k~T~~aiqsG~v~g~~~~i~~~~~~~k~~~~~~ 213 (251)
T COG1521 149 -ILPGITLSFEALF-ARAAKLPRVEIARPESVPG-------------KNTVEAIQSGVVYGYVGLIEGLLKEIKEELKGG 213 (251)
T ss_pred -eccCHHHHHHHHH-HHHhcCCcccccCccccCC-------------cchHHHHHHhHHHHHHHHHHHHHHHHHHHhCCC
Q ss_pred CEEEEecCCCCh
Q 004211 334 HSVELVGSGSRI 345 (768)
Q Consensus 334 ~~V~LvGG~sri 345 (768)
..++++||.+++
T Consensus 214 ~~~vltGg~~~~ 225 (251)
T COG1521 214 DAVVLTGGLAKL 225 (251)
T ss_pred CeEEEeCCchHh
No 211
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=40.25 E-value=2.4e+02 Score=33.14 Aligned_cols=24 Identities=8% Similarity=-0.021 Sum_probs=20.6
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHH
Q 004211 682 HSLPSKVRDAVIDECSKAEEWLRE 705 (768)
Q Consensus 682 ~~~~~~e~~~v~~~~~~~~~Wl~~ 705 (768)
..++.++++.+...+++.+.||+.
T Consensus 530 ~~l~~~~~~~i~~~~~~~~~~l~~ 553 (595)
T PRK01433 530 TLLSESEISIINSLLDNIKEAVHA 553 (595)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhc
Confidence 347899999999999999999963
No 212
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=39.97 E-value=26 Score=32.98 Aligned_cols=17 Identities=24% Similarity=0.524 Sum_probs=15.9
Q ss_pred EEEEEcCccceEEEEEE
Q 004211 3 VVGFDIGNENCVIAAVK 19 (768)
Q Consensus 3 viGID~GTt~s~va~~~ 19 (768)
|+|||.|++++..|++.
T Consensus 2 ILGIDPGl~~~G~av~~ 18 (154)
T cd00529 2 ILGIDPGSRNTGYGVIE 18 (154)
T ss_pred EEEEccCcCceEEEEEE
Confidence 89999999999999975
No 213
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=39.61 E-value=6.7e+02 Score=29.17 Aligned_cols=119 Identities=16% Similarity=0.240 Sum_probs=73.8
Q ss_pred CHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHHHHHHHhh---HhhccCC--HHHHHHHHHHHHHHHHHHhhcCC
Q 004211 556 TKTELSEAVEKEHQLVQQDLKMERTKDRKNALESYVYEMRDKISN---IYRSFAT--ESEREGISRNLRDTEEWLYEDGD 630 (768)
Q Consensus 556 s~~e~~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~---~~~~~~t--~~e~~~l~~~l~~~~~WL~~~g~ 630 (768)
..+++..+...+..+...+...| .+-..|...--.+|..|.+ .|..... ++..+.+....++..+|......
T Consensus 113 ~e~~i~~i~~~l~~L~~~e~~nr---~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ie~~F~~f~~lt~~GD~ 189 (560)
T PF06160_consen 113 IEEDIKEILDELDELLESEEKNR---EEIEELKEKYRELRKELLAHSFSYGPAIEELEKQLENIEEEFSEFEELTENGDY 189 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHHHHHHCCCH
Confidence 34566666667777666665444 3334455555566766643 2333332 45567777777777777754322
Q ss_pred C---ccHHHHHHHHHHHHHhHhHHHHhhHh-HHHHHHHHHHHHHHHHHHHH
Q 004211 631 D---ESENVYAERLEDLKKLVDPIEGRYKD-EEARAQATGALLKCAMDYRK 677 (768)
Q Consensus 631 ~---a~~~~~~~kl~~L~~~~~pi~~R~~e-~~~rp~a~~~l~~~l~~~~~ 677 (768)
. .....+++.+..|+....-|-.-+.+ ....|..++.++........
T Consensus 190 ~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~gy~~m~~ 240 (560)
T PF06160_consen 190 LEAREILEKLKEETDELEEIMEDIPKLYKELQKEFPDQLEELKEGYREMEE 240 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 2 23346677778888888888777777 45789888888876655444
No 214
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=39.49 E-value=7.4e+02 Score=31.09 Aligned_cols=36 Identities=6% Similarity=0.192 Sum_probs=24.1
Q ss_pred CCCHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHHHHHHHh
Q 004211 554 GMTKTELSEAVEKEHQLVQQDLKMERTKDRKNALESYVYEMRDKIS 599 (768)
Q Consensus 554 ~ls~~e~~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~ 599 (768)
+++.++|..+.. .++++....++.|..+|+.+..+.
T Consensus 1507 p~tpeqi~~L~~----------~I~e~v~sL~nVd~IL~~T~~di~ 1542 (1758)
T KOG0994|consen 1507 PLTPEQIQQLTG----------EIQERVASLPNVDAILSRTKGDIA 1542 (1758)
T ss_pred CCCHHHHHHHHH----------HHHHHHHhcccHHHHHHhhhhhHH
Confidence 466666655544 345567778888888888877664
No 215
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=39.36 E-value=3.8e+02 Score=26.29 Aligned_cols=22 Identities=18% Similarity=0.277 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhcC
Q 004211 608 ESEREGISRNLRDTEEWLYEDG 629 (768)
Q Consensus 608 ~~e~~~l~~~l~~~~~WL~~~g 629 (768)
.+-++.|...|+....-+.-+|
T Consensus 38 ~eaqeQF~sALe~f~sl~~~~g 59 (201)
T PF11172_consen 38 QEAQEQFKSALEQFKSLVNFDG 59 (201)
T ss_pred HHHHHHHHHHHHHHHHhhCCCC
Confidence 3345566666666655554443
No 216
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []. This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....
Probab=38.71 E-value=1e+02 Score=29.31 Aligned_cols=88 Identities=15% Similarity=0.203 Sum_probs=50.8
Q ss_pred cHHHHHHHHHHHHHHHHHhhccCCCCeEEEEeCCCCCHHH----------------HHHHHHHHHHcCCCceeeccchHH
Q 004211 114 TPVQILGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDVQ----------------RRAYLDAATIAGLKPLRLMHDCTA 177 (768)
Q Consensus 114 ~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~q----------------r~~l~~Aa~~AGl~~~~li~Ep~A 177 (768)
++++++..+...+.+.....- .. .+.|++|...+... .+.+.+. .+++ +.+.|+..|
T Consensus 31 ~~~~~~~~l~~~i~~~~~~~~-~~--gIgi~~pG~v~~~~g~i~~~~~~~~~~~~l~~~l~~~---~~~p-v~i~Nd~~~ 103 (179)
T PF00480_consen 31 SPEELLDALAELIERLLADYG-RS--GIGISVPGIVDSEKGRIISSPNPGWENIPLKEELEER---FGVP-VIIENDANA 103 (179)
T ss_dssp SHHHHHHHHHHHHHHHHHHHT-CE--EEEEEESSEEETTTTEEEECSSGTGTTCEHHHHHHHH---HTSE-EEEEEHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhcc-cc--cEEEeccccCcCCCCeEEecCCCCcccCCHHHHhhcc---cceE-EEEecCCCc
Confidence 455666666655555544331 11 55555555444322 2233332 3554 488999999
Q ss_pred HHHHhhhcccCCCCCCCcEEEEEEeCCceEEEEEE
Q 004211 178 TALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVA 212 (768)
Q Consensus 178 aal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~ 212 (768)
+|++..+.... ....+++++-+|-| +-.+++
T Consensus 104 ~a~ae~~~~~~---~~~~~~~~l~ig~G-iG~~ii 134 (179)
T PF00480_consen 104 AALAEYWFGAA---KDCDNFLYLYIGTG-IGAGII 134 (179)
T ss_dssp HHHHHHHHSTT---TTTSSEEEEEESSS-EEEEEE
T ss_pred ceeehhhcCcc---CCcceEEEEEeecC-CCccee
Confidence 99887664322 34467888888876 555554
No 217
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=38.31 E-value=84 Score=32.45 Aligned_cols=48 Identities=13% Similarity=0.031 Sum_probs=37.5
Q ss_pred CCCCcCEEEEecCCCChHHHHHHHHhhcC----CCCCCcCCchhHHHhhHHH
Q 004211 329 NVEKIHSVELVGSGSRIPAISRMLNSLFN----REPGRTINASECVARGCAL 376 (768)
Q Consensus 329 ~~~~i~~V~LvGG~srip~v~~~l~~~fg----~~v~~~~n~~eava~GAa~ 376 (768)
-+..+|.|+|+||.++...+-++|.+... .-+...-+-.+|-|.|+..
T Consensus 293 L~G~vDaIvLTGGiA~~~~f~~~I~~~v~~iapv~v~PGE~EleALA~G~lR 344 (358)
T COG3426 293 LKGKVDAIVLTGGIAYEKLFVDAIEDRVSWIAPVIVYPGEDELEALAEGALR 344 (358)
T ss_pred cCCCCCEEEEecchhhHHHHHHHHHHHHhhhcceEecCCchHHHHHHhhhHH
Confidence 34579999999999999999999988774 2334455777899999853
No 218
>PF15043 CNRIP1: CB1 cannabinoid receptor-interacting protein 1
Probab=38.21 E-value=3.5e+02 Score=25.55 Aligned_cols=72 Identities=10% Similarity=0.188 Sum_probs=47.2
Q ss_pred CCCCCceeEEEEeecCceEEEEEEe----------ccccCCC-------CCCCcceeEEecCCCCCCCCc-ceEEEEEEE
Q 004211 421 GQPFPSVKILTLHRSNGFQLQAFYA----------DQNELPS-------VVSPQISSFMIGPFQTSHAET-ARVKVRVHL 482 (768)
Q Consensus 421 ~~~~p~~k~~~~~~~~~~~i~~~~~----------~~~~~~~-------~~~~~i~~~~i~~~~~~~~~~-~~i~v~~~~ 482 (768)
|.++...+++.+.+...+.+.+..- ++..++. ....+-|.|.-.|+++...|. ..|.|.+.+
T Consensus 29 G~RF~q~RTiKl~tdskYkv~V~~kP~~~~~~~~igg~~~~l~~ks~d~~~~vYs~~~~T~G~~~TKsG~Rq~i~i~~~f 108 (161)
T PF15043_consen 29 GQRFGQNRTIKLLTDSKYKVDVTIKPPTVETSLSIGGVSLPLEEKSRDEQSVVYSGQYDTEGVPPTKSGERQPIQISMQF 108 (161)
T ss_pred ccccCCceEEEEecCCEEEEEEEEcCCcceeeeEecceeeceeecccCCCeeEEEEEeecCCCCcccCCccccEEEEEEe
Confidence 7778777888887665544444321 1122222 224577888899998875543 479999999
Q ss_pred cCCccEEEEe
Q 004211 483 DLDGVVRVQS 492 (768)
Q Consensus 483 d~~Gil~v~~ 492 (768)
+..|.+.+.-
T Consensus 109 ~~~g~~~~~~ 118 (161)
T PF15043_consen 109 NPGGTLETVW 118 (161)
T ss_pred cCcceEEEEE
Confidence 9999887653
No 219
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=38.19 E-value=1e+02 Score=35.85 Aligned_cols=66 Identities=17% Similarity=0.313 Sum_probs=47.8
Q ss_pred HHHHHhhHHHHHHHHHHHHhhHhhccCCHHHHHHHHHHHHHHHHHHhhcCC-------Cc---cHHHHHHHHHHHHHhHh
Q 004211 580 TKDRKNALESYVYEMRDKISNIYRSFATESEREGISRNLRDTEEWLYEDGD-------DE---SENVYAERLEDLKKLVD 649 (768)
Q Consensus 580 ~~~akN~LEs~iy~~r~~l~~~~~~~~t~~e~~~l~~~l~~~~~WL~~~g~-------~a---~~~~~~~kl~~L~~~~~ 649 (768)
+-.+..+|+..|-.+|..+.+ +.++....+++.+.|+...-. .+ ..++...+.++|.+.+.
T Consensus 650 r~k~~d~~~~~i~~~r~~~~~---------~~~k~~~~~~~a~kw~~~~~~~q~~~~~t~~pv~~~e~~~~~~~l~~~~~ 720 (727)
T KOG0103|consen 650 RPKAFDELGKKIQEIRKAIES---------EMEKVLLEIEEAEKWLERKSNKQNKLSKTADPVPSSEIESEAKELNNTCS 720 (727)
T ss_pred hhHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCchHHHHHhhhhhccccc
Confidence 345666666666666666533 778888999999999986411 12 34788899999999999
Q ss_pred HHHHh
Q 004211 650 PIEGR 654 (768)
Q Consensus 650 pi~~R 654 (768)
||..+
T Consensus 721 ~i~~~ 725 (727)
T KOG0103|consen 721 DIISK 725 (727)
T ss_pred ccccc
Confidence 98764
No 220
>PLN03170 chalcone synthase; Provisional
Probab=38.06 E-value=88 Score=34.64 Aligned_cols=51 Identities=16% Similarity=0.205 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCcCEEEEecCCC-ChHHHHHHHHhhcCCC
Q 004211 309 SSLLERMRIPCQKALAGSGLNVEKIHSVELVGSGS-RIPAISRMLNSLFNRE 359 (768)
Q Consensus 309 ~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~s-rip~v~~~l~~~fg~~ 359 (768)
+...+-.....+++|+++|+.+++|+.|+++-.+. .+|.+.-.|.+.+|.+
T Consensus 104 ~~a~~La~~Aa~~AL~~ag~~~~dId~lI~~T~Tg~~~Ps~a~~l~~~LGl~ 155 (401)
T PLN03170 104 VEVPKLGKAAAQKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKMLGLR 155 (401)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCCCChHHHHHHHHhCcC
Confidence 34445566778999999999999999988777544 6999999999999843
No 221
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=38.05 E-value=95 Score=30.01 Aligned_cols=57 Identities=26% Similarity=0.395 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhhHhhccCCHHHHHHHHHHHHHHHHHHhhcCCC-ccHHHHHHHHHHHHHhHhHHHH
Q 004211 589 SYVYEMRDKISNIYRSFATESEREGISRNLRDTEEWLYEDGDD-ESENVYAERLEDLKKLVDPIEG 653 (768)
Q Consensus 589 s~iy~~r~~l~~~~~~~~t~~e~~~l~~~l~~~~~WL~~~g~~-a~~~~~~~kl~~L~~~~~pi~~ 653 (768)
.|+-++|..|. ..+++||+++ ++.+++++++.+++ .+.++..+.|-.-+.+.+.+..
T Consensus 5 efL~~L~~~L~-----~lp~~e~~e~---l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i~~ 62 (181)
T PF08006_consen 5 EFLNELEKYLK-----KLPEEEREEI---LEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREILA 62 (181)
T ss_pred HHHHHHHHHHH-----cCCHHHHHHH---HHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHHHH
Confidence 45555555552 3566666554 56667777765433 3556666666655666555554
No 222
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=37.83 E-value=22 Score=32.49 Aligned_cols=19 Identities=26% Similarity=0.518 Sum_probs=16.4
Q ss_pred EEEEcCccceEEEEEEcCC
Q 004211 4 VGFDIGNENCVIAAVKQGG 22 (768)
Q Consensus 4 iGID~GTt~s~va~~~~g~ 22 (768)
+|||+|+..+.+|+.++.+
T Consensus 1 laiD~G~kriGvA~~d~~~ 19 (130)
T TIGR00250 1 LGLDFGTKSIGVAGQDITG 19 (130)
T ss_pred CeEccCCCeEEEEEECCCC
Confidence 6999999999999876654
No 223
>PLN03173 chalcone synthase; Provisional
Probab=37.32 E-value=1e+02 Score=34.04 Aligned_cols=50 Identities=16% Similarity=0.192 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCcCEEEEecCCC-ChHHHHHHHHhhcCCC
Q 004211 310 SLLERMRIPCQKALAGSGLNVEKIHSVELVGSGS-RIPAISRMLNSLFNRE 359 (768)
Q Consensus 310 ~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~s-rip~v~~~l~~~fg~~ 359 (768)
...+-..+.++++|+++|+.+++|+.|+++..+. ..|.+--.|.+.+|..
T Consensus 101 ~a~~La~~Aa~~AL~~ag~~~~dId~li~~t~t~~~~P~~a~~l~~~LGl~ 151 (391)
T PLN03173 101 EVPKLGKEAAAKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLR 151 (391)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCcccHHHHHHHHHhCCC
Confidence 3445555678999999999999999998887544 5899999999999843
No 224
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=35.57 E-value=1e+03 Score=30.05 Aligned_cols=20 Identities=10% Similarity=0.265 Sum_probs=12.5
Q ss_pred CCCHHHHHHHHHHHHHHhhh
Q 004211 554 GMTKTELSEAVEKEHQLVQQ 573 (768)
Q Consensus 554 ~ls~~e~~~~~~~~~~~~~~ 573 (768)
+.+.++.+.+...+..|...
T Consensus 774 ~~s~~~v~~le~~l~~~~~~ 793 (1293)
T KOG0996|consen 774 GVSKESVEKLERALSKMSDK 793 (1293)
T ss_pred CCCHHHHHHHHHHHHHHHHH
Confidence 46777777776666665433
No 225
>PF06840 DUF1241: Protein of unknown function (DUF1241); InterPro: IPR009652 This family consists of several programmed cell death 10 protein (PDCD10 or TFAR15) sequences. The function of this family is unknown.; PDB: 3L8I_A 3RQG_B 3RQE_B 3L8J_A 3RQF_B 3AJM_B.
Probab=35.52 E-value=2.9e+02 Score=25.92 Aligned_cols=35 Identities=17% Similarity=0.205 Sum_probs=29.6
Q ss_pred HHHHhHhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHH
Q 004211 643 DLKKLVDPIEGRYKDEEARAQATGALLKCAMDYRKVV 679 (768)
Q Consensus 643 ~L~~~~~pi~~R~~e~~~rp~a~~~l~~~l~~~~~~~ 679 (768)
-|.-+..|++.++.. ....|++.|+.++..+++..
T Consensus 12 ~L~~li~Pvl~eL~~--~d~~A~q~Lr~Af~kAE~~~ 46 (154)
T PF06840_consen 12 ALQCLIRPVLDELEQ--KDSDAIQTLRAAFTKAEKSS 46 (154)
T ss_dssp HHHHTHHHHHHHHHT--THHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHhC
Confidence 477889999999988 66669999999999888754
No 226
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=35.46 E-value=8.2e+02 Score=29.01 Aligned_cols=68 Identities=18% Similarity=0.182 Sum_probs=32.1
Q ss_pred CCCHHHHHHHHHHHHHHh-hhhhhHHHHHHHHhhHHHHHHHHHHHHhhHhhccCCHHHHHHHHHHHHHHHHHH
Q 004211 554 GMTKTELSEAVEKEHQLV-QQDLKMERTKDRKNALESYVYEMRDKISNIYRSFATESEREGISRNLRDTEEWL 625 (768)
Q Consensus 554 ~ls~~e~~~~~~~~~~~~-~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~t~~e~~~l~~~l~~~~~WL 625 (768)
.++..++..+...+.... ..........+....+|.-+-.+..+|.. ...+++.+.+...+++++.=+
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~el~~l~~~l~~----~~~~e~i~~l~e~l~~l~~~l 437 (650)
T TIGR03185 369 RLSGSELTQLEVLIQQVKRELQDAKSQLLKELRELEEELAEVDKKIST----IPSEEQIAQLLEELGEAQNEL 437 (650)
T ss_pred cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCChHHHHHHHHHHHHHHHHH
Confidence 355555554444333333 12223333444555566666666666532 233345555555555554433
No 227
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=35.34 E-value=1.9e+02 Score=32.11 Aligned_cols=54 Identities=17% Similarity=0.246 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEecCCCChHHHHHHHHhhcC
Q 004211 304 FEKLSSSLLERMRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFN 357 (768)
Q Consensus 304 fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~fg 357 (768)
++++-+-+++.+..++.+++.++++.+++|..+.++|-++..-.+.-.=-+.++
T Consensus 55 ~~~L~~~i~~~i~~li~~l~~~~gi~~~~I~~i~i~GNt~M~hLllGl~~~~L~ 108 (412)
T PF14574_consen 55 LEELQRLIRETINELIEELLEKAGISPEDIYEIVIVGNTTMLHLLLGLDPEGLG 108 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT--GGGEEEEEEEE-HHHHHHHHT---GGGS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHeEEEEEEecHHHHHHHcCCChHHhc
Confidence 455666677888899999999999999999999999977665555443333343
No 228
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=34.57 E-value=7.9e+02 Score=28.55 Aligned_cols=113 Identities=15% Similarity=0.120 Sum_probs=55.0
Q ss_pred HHHHhhHHHHHHHHHHHHhhHhhccCCHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHhHhHHHHhhHhHHH
Q 004211 581 KDRKNALESYVYEMRDKISNIYRSFATESEREGISRNLRDTEEWLYEDGDDESENVYAERLEDLKKLVDPIEGRYKDEEA 660 (768)
Q Consensus 581 ~~akN~LEs~iy~~r~~l~~~~~~~~t~~e~~~l~~~l~~~~~WL~~~g~~a~~~~~~~kl~~L~~~~~pi~~R~~e~~~ 660 (768)
.++...||...+++++.+++ --..|++.+.+.+.+.....-..-.| .+.+++.+.+++++.-.. ....
T Consensus 276 ~~~~~~l~d~~~~l~~~~~~---l~~dp~~L~ele~RL~~l~~LkrKyg--~s~e~l~~~~~~l~~eL~-------~l~~ 343 (563)
T TIGR00634 276 GNALTEVEEATRELQNYLDE---LEFDPERLNEIEERLAQIKRLKRKYG--ASVEEVLEYAEKIKEELD-------QLDD 343 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHHH-------HHhC
Confidence 44445555555555555432 13457777888888777766554443 345555555555543333 3333
Q ss_pred HHHHHHHHHHHHHHHHHHHHh--CCCChhhHHHHHHHHHHHHHHHHH
Q 004211 661 RAQATGALLKCAMDYRKVVEA--HSLPSKVRDAVIDECSKAEEWLRE 705 (768)
Q Consensus 661 rp~a~~~l~~~l~~~~~~~~~--~~~~~~e~~~v~~~~~~~~~Wl~~ 705 (768)
....++.+++.+..++..+.. ..++...++...........||..
T Consensus 344 ~~~~le~L~~el~~l~~~l~~~a~~Ls~~R~~~a~~l~~~v~~~l~~ 390 (563)
T TIGR00634 344 SDESLEALEEEVDKLEEELDKAAVALSLIRRKAAERLAKRVEQELKA 390 (563)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444433310 112333333334444445555544
No 229
>PRK00292 glk glucokinase; Provisional
Probab=34.49 E-value=36 Score=36.30 Aligned_cols=49 Identities=22% Similarity=0.163 Sum_probs=30.5
Q ss_pred HHcCCCceeeccchHHHHHHhhhcc-------cCCCCC-CCcEEEEEEeCCceEEEEEE
Q 004211 162 TIAGLKPLRLMHDCTATALGYGIYK-------TDFSNV-GPTYVVFVDIGHCDTQVCVA 212 (768)
Q Consensus 162 ~~AGl~~~~li~Ep~Aaal~y~~~~-------~~~~~~-~~~~vlv~D~GggT~dvsv~ 212 (768)
+..|++.+.+.|+..|+|++-.... .. ... ...+++++-+|.| +-.+++
T Consensus 88 ~~~~~p~v~l~ND~~aaalgE~~~~~~~~~~~g~-~~~~~~~~~~~v~~GTG-iG~giv 144 (316)
T PRK00292 88 QELGLDHLLLINDFTAQALAIPRLGEEDLVQIGG-GEPVPGAPIAVIGPGTG-LGVAGL 144 (316)
T ss_pred HHhCCCeEEEEecHHHHHcccccCCHhheeEeCC-CCCCCCCcEEEEEcCCc-ceEEEE
Confidence 3458876799999999998754320 00 001 1367888888877 444443
No 230
>PF04848 Pox_A22: Poxvirus A22 protein; InterPro: IPR006932 This family, representing the Poxvirus A22 protein, is a Holliday junction resolvase, it specifically cleaves and resolves four-way DNA Holliday junctions into linear duplex products. ; GO: 0000287 magnesium ion binding, 0000400 four-way junction DNA binding, 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination
Probab=34.43 E-value=44 Score=30.94 Aligned_cols=21 Identities=24% Similarity=0.395 Sum_probs=18.7
Q ss_pred CeEEEEEcCccceEEEEEEcC
Q 004211 1 MSVVGFDIGNENCVIAAVKQG 21 (768)
Q Consensus 1 m~viGID~GTt~s~va~~~~g 21 (768)
|.|++||+|+-|...+++...
T Consensus 1 mii~sIDiGikNlA~~iie~~ 21 (143)
T PF04848_consen 1 MIILSIDIGIKNLAYCIIEFE 21 (143)
T ss_pred CeEEEEecCCCceeEEEEEcC
Confidence 889999999999999998743
No 231
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=33.92 E-value=4.2e+02 Score=25.16 Aligned_cols=91 Identities=13% Similarity=0.094 Sum_probs=39.8
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHhHhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 004211 604 SFATESEREGISRNLRDTEEWLYEDGDDESENVYAERLEDLKKLVDPIEGRYKDEEARAQATGALLKCAMDYRKVVEAHS 683 (768)
Q Consensus 604 ~~~t~~e~~~l~~~l~~~~~WL~~~g~~a~~~~~~~kl~~L~~~~~pi~~R~~e~~~rp~a~~~l~~~l~~~~~~~~~~~ 683 (768)
...++++...+...+.++.+=+..- ......+...|..|.+... ...........-.-+..+...|..++.-. ..
T Consensus 67 ~~~s~eel~~ld~ei~~L~~el~~l--~~~~k~l~~eL~~L~~~~t-~~el~~~i~~l~~e~~~l~~kL~~l~~~~--~~ 141 (169)
T PF07106_consen 67 EVPSPEELAELDAEIKELREELAEL--KKEVKSLEAELASLSSEPT-NEELREEIEELEEEIEELEEKLEKLRSGS--KP 141 (169)
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CC
Confidence 3445666666666665555544321 1111222222222221110 11111222222233334444444444422 34
Q ss_pred CChhhHHHHHHHHHHH
Q 004211 684 LPSKVRDAVIDECSKA 699 (768)
Q Consensus 684 ~~~~e~~~v~~~~~~~ 699 (768)
+++++++.+.......
T Consensus 142 vs~ee~~~~~~~~~~~ 157 (169)
T PF07106_consen 142 VSPEEKEKLEKEYKKW 157 (169)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 8899999888765443
No 232
>PHA02566 alt ADP-ribosyltransferase; Provisional
Probab=33.87 E-value=8.4e+02 Score=28.65 Aligned_cols=50 Identities=16% Similarity=0.163 Sum_probs=40.3
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCc--ccHHHHHHHHHHHHHHhhh
Q 004211 684 LPSKVRDAVIDECSKAEEWLREKVTQQDSLPKDADPI--LWSTEIKRKSEALDLTCKC 739 (768)
Q Consensus 684 ~~~~e~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~--~~~~di~~k~~~l~~~~~~ 739 (768)
+|.+|+..|.+-+..--.|.|+-+.... +|. ..-.++++.++.|+..+.+
T Consensus 425 LT~~E~~AI~dY~~sgY~~IN~yLrG~~------~s~~~~~~~ei~k~Ik~IDsAf~k 476 (684)
T PHA02566 425 LTPAESRAIREYCASGYIDINNFLLGRY------KPEFYMDEEEAEKAIDNLDSAFKN 476 (684)
T ss_pred CCHHHHHHHHHHHHhhHHHHHHHHhcCC------CcccccChHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999885222 333 3346888999999988876
No 233
>PF02801 Ketoacyl-synt_C: Beta-ketoacyl synthase, C-terminal domain; InterPro: IPR014031 Beta-ketoacyl-ACP synthase 2.3.1.41 from EC (KAS) [] is the enzyme that catalyzes the condensation of malonyl-ACP with the growing fatty acid chain. It is found as a component of a number of enzymatic systems, including fatty acid synthetase (FAS), which catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH; the multi-functional 6-methysalicylic acid synthase (MSAS) from Penicillium patulum [], which is involved in the biosynthesis of a polyketide antibiotic; polyketide antibiotic synthase enzyme systems; Emericella nidulans multifunctional protein Wa, which is involved in the biosynthesis of conidial green pigment; Rhizobium nodulation protein nodE, which probably acts as a beta-ketoacyl synthase in the synthesis of the nodulation Nod factor fatty acyl chain; and yeast mitochondrial protein CEM1. The condensation reaction is a two step process, first the acyl component of an activated acyl primer is transferred to a cysteine residue of the enzyme and is then condensed with an activated malonyl donor with the concomitant release of carbon dioxide. This entry represents the C-terminal domain of beta-ketoacyl-ACP synthases. The active site is contained in a cleft betweeen N- and C-terminal domains, with residues from both domains contributing to substrate binding and catalysis [].; PDB: 2UV8_B 3HMJ_A 2VKZ_C 4EWG_A 1TQY_H 1E5M_A 1J3N_B 2VZ8_A 2VZ9_B 3O04_A ....
Probab=33.69 E-value=42 Score=29.87 Aligned_cols=45 Identities=24% Similarity=0.443 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhCCCCCCCcCEEEEecCCCChH--HHHHHHHhhcC
Q 004211 313 ERMRIPCQKALAGSGLNVEKIHSVELVGSGSRIP--AISRMLNSLFN 357 (768)
Q Consensus 313 ~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~srip--~v~~~l~~~fg 357 (768)
..+...|+++|+++++.+.+|+.|...|-++..- .=.+.|.+.|+
T Consensus 25 ~~~~~~i~~al~~agi~~~~I~~i~~hg~Gt~~~D~~E~~ai~~~~~ 71 (119)
T PF02801_consen 25 AALARAIRRALADAGISPEDIDYIEAHGTGTPLGDAAEAEAIARVFG 71 (119)
T ss_dssp HHHHHHHHHHHHHHTS-GGGEEEEE----SSHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHhhhccccccceeeeeeccccccchhhhhhhhhhhhc
Confidence 3456679999999999999999999999888753 33345777775
No 234
>PRK13331 pantothenate kinase; Reviewed
Probab=33.58 E-value=39 Score=34.67 Aligned_cols=22 Identities=14% Similarity=0.031 Sum_probs=19.1
Q ss_pred CeEEEEEcCccceEEEEEEcCC
Q 004211 1 MSVVGFDIGNENCVIAAVKQGG 22 (768)
Q Consensus 1 m~viGID~GTt~s~va~~~~g~ 22 (768)
|.++.||+|+|++++++++.+.
T Consensus 7 ~~~L~iDiGNT~~~~g~f~~~~ 28 (251)
T PRK13331 7 NEWLALMIGNSRLHWGYFSGET 28 (251)
T ss_pred CcEEEEEeCCCcEEEEEEECCE
Confidence 4689999999999999998554
No 235
>PLN03172 chalcone synthase family protein; Provisional
Probab=33.57 E-value=1.1e+02 Score=33.69 Aligned_cols=52 Identities=15% Similarity=0.177 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEecCCC-ChHHHHHHHHhhcCCC
Q 004211 308 SSSLLERMRIPCQKALAGSGLNVEKIHSVELVGSGS-RIPAISRMLNSLFNRE 359 (768)
Q Consensus 308 ~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~s-rip~v~~~l~~~fg~~ 359 (768)
.+...+-..+..+++|+++|+.+++|+.|+++..+. .+|.+--.|.+.+|.+
T Consensus 99 ~~~a~~La~~Aa~~aL~~ag~~~~dId~ii~~t~t~~~~P~~a~~l~~~LGl~ 151 (393)
T PLN03172 99 VVEVPKLGKEAAAKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLK 151 (393)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCcCchHHHHHHHHhCCC
Confidence 334445556678999999999999999998777554 6999999999999843
No 236
>PLN02854 3-ketoacyl-CoA synthase
Probab=33.54 E-value=93 Score=35.56 Aligned_cols=50 Identities=12% Similarity=0.112 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCcCEEEE-ecCCCChHHHHHHHHhhcCCC
Q 004211 310 SLLERMRIPCQKALAGSGLNVEKIHSVEL-VGSGSRIPAISRMLNSLFNRE 359 (768)
Q Consensus 310 ~~~~~i~~~i~~~l~~~~~~~~~i~~V~L-vGG~srip~v~~~l~~~fg~~ 359 (768)
+.-.-+...++++|+++|+++++|+.|++ +.|....|.+-.+|.+.+|.+
T Consensus 187 ea~~v~~~~~~~lL~kaGi~p~dID~LIv~cS~~~p~PSlAa~I~n~LGlr 237 (521)
T PLN02854 187 EAEAVMFGALDSLFSKTGVKPRDIGILIVNCSLFNPTPSLSAMIVNHYKLR 237 (521)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCCHHHHHHHHhCCC
Confidence 33334556778899999999999999987 344445899999999999843
No 237
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=33.19 E-value=49 Score=31.91 Aligned_cols=18 Identities=17% Similarity=0.392 Sum_probs=16.8
Q ss_pred EEEEcCccceEEEEEEcC
Q 004211 4 VGFDIGNENCVIAAVKQG 21 (768)
Q Consensus 4 iGID~GTt~s~va~~~~g 21 (768)
||||.|.|||=+.+++++
T Consensus 2 igIDvGGT~TD~v~~d~~ 19 (176)
T PF05378_consen 2 IGIDVGGTFTDAVLLDED 19 (176)
T ss_pred eeEecCCCcEEEEEEeCC
Confidence 799999999999998887
No 238
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=32.39 E-value=1.1e+03 Score=29.78 Aligned_cols=45 Identities=9% Similarity=0.115 Sum_probs=23.3
Q ss_pred CCHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHHHHHHHh
Q 004211 555 MTKTELSEAVEKEHQLVQQDLKMERTKDRKNALESYVYEMRDKIS 599 (768)
Q Consensus 555 ls~~e~~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~ 599 (768)
+++.++..+..........+..+..+.+-...++.-++.++..+.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~t~~nL~r~~d~l~el~~ql~ 196 (1179)
T TIGR02168 152 AKPEERRAIFEEAAGISKYKERRKETERKLERTRENLDRLEDILN 196 (1179)
T ss_pred CCHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666655555544444444444444444445555555543
No 239
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=31.65 E-value=7.9e+02 Score=28.54 Aligned_cols=13 Identities=23% Similarity=0.281 Sum_probs=7.3
Q ss_pred eccceeeEEEecC
Q 004211 394 DSFPFSIGFSSEK 406 (768)
Q Consensus 394 d~~~~~i~i~~~~ 406 (768)
+..++++++++.+
T Consensus 51 ~lslfpl~l~i~g 63 (555)
T TIGR03545 51 DTGLFPLQLSIQG 63 (555)
T ss_pred EeeecCCeEEEee
Confidence 3455666666653
No 240
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=31.63 E-value=1.1e+03 Score=30.06 Aligned_cols=45 Identities=16% Similarity=0.203 Sum_probs=21.2
Q ss_pred CCCHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHHHHHHH
Q 004211 554 GMTKTELSEAVEKEHQLVQQDLKMERTKDRKNALESYVYEMRDKI 598 (768)
Q Consensus 554 ~ls~~e~~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l 598 (768)
.+++.+...+.+.+......+....+..+....++.-+.++++.+
T Consensus 149 ~~~~~~r~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~l~el~~~~ 193 (1164)
T TIGR02169 149 SMSPVERRKIIDEIAGVAEFDRKKEKALEELEEVEENIERLDLII 193 (1164)
T ss_pred CCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666665554444444433333333333444444444444
No 241
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=31.58 E-value=6.4e+02 Score=30.69 Aligned_cols=16 Identities=19% Similarity=0.262 Sum_probs=11.6
Q ss_pred CCCHHHHHHHHHHHHH
Q 004211 554 GMTKTELSEAVEKEHQ 569 (768)
Q Consensus 554 ~ls~~e~~~~~~~~~~ 569 (768)
+++.+-++++.+.+..
T Consensus 498 Glp~~ii~~A~~~~~~ 513 (782)
T PRK00409 498 GLPENIIEEAKKLIGE 513 (782)
T ss_pred CcCHHHHHHHHHHHhh
Confidence 6888888877776543
No 242
>PRK03918 chromosome segregation protein; Provisional
Probab=31.49 E-value=1.1e+03 Score=29.13 Aligned_cols=14 Identities=7% Similarity=0.292 Sum_probs=6.8
Q ss_pred EEEec--CCCChHHHH
Q 004211 336 VELVG--SGSRIPAIS 349 (768)
Q Consensus 336 V~LvG--G~srip~v~ 349 (768)
.+++| |++..-.+.
T Consensus 26 ~~i~G~nG~GKStil~ 41 (880)
T PRK03918 26 NLIIGQNGSGKSSILE 41 (880)
T ss_pred EEEEcCCCCCHHHHHH
Confidence 34555 455554443
No 243
>PRK13326 pantothenate kinase; Reviewed
Probab=30.64 E-value=46 Score=34.44 Aligned_cols=21 Identities=33% Similarity=0.340 Sum_probs=18.5
Q ss_pred eEEEEEcCccceEEEEEEcCC
Q 004211 2 SVVGFDIGNENCVIAAVKQGG 22 (768)
Q Consensus 2 ~viGID~GTt~s~va~~~~g~ 22 (768)
.++.||+|+|++++++++.++
T Consensus 7 ~~L~IDiGNT~ik~glf~~~~ 27 (262)
T PRK13326 7 SQLIIDIGNTSISFALYKDNK 27 (262)
T ss_pred EEEEEEeCCCeEEEEEEECCE
Confidence 578999999999999998655
No 244
>KOG0517 consensus Beta-spectrin [Cytoskeleton]
Probab=30.52 E-value=1.5e+03 Score=30.43 Aligned_cols=102 Identities=18% Similarity=0.260 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhc----------C-CCccHHHHHHHHHHHHHhHhHHHHhhHhHHH--------HHHHHHHH
Q 004211 608 ESEREGISRNLRDTEEWLYED----------G-DDESENVYAERLEDLKKLVDPIEGRYKDEEA--------RAQATGAL 668 (768)
Q Consensus 608 ~~e~~~l~~~l~~~~~WL~~~----------g-~~a~~~~~~~kl~~L~~~~~pi~~R~~e~~~--------rp~a~~~l 668 (768)
....+.+.-.|.++..|+.+- | +-+..-.++.+|+-|..-..||..|....+. .|+--..+
T Consensus 949 a~~V~~f~~eC~et~~wi~dK~~~~e~t~~~~~Dl~gv~alqrrL~~lErdl~aie~kv~~L~~ea~~v~~~~Paea~~i 1028 (2473)
T KOG0517|consen 949 ALRVETFHLECEETRVWIRDKTRVLESTDRLGNDLAGVMALQRRLQGLERDLAAIEAKVAALEKEANKVEEEHPAEAQAI 1028 (2473)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccCcchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcChHHHHHH
Confidence 334566777888888998663 1 1133346788888888888888888766543 44444455
Q ss_pred HHHHHHHHHHHHh---------CCCC-hhhHHHHHHHHHHHHHHHHHHHHh
Q 004211 669 LKCAMDYRKVVEA---------HSLP-SKVRDAVIDECSKAEEWLREKVTQ 709 (768)
Q Consensus 669 ~~~l~~~~~~~~~---------~~~~-~~e~~~v~~~~~~~~~Wl~~~~~~ 709 (768)
+..+..+....++ ..+. .-.++.+...++.+..|+......
T Consensus 1029 ~~r~~el~~~w~~l~~~~~~~~~~l~ea~~lQ~Fl~dld~f~~Wl~~tq~~ 1079 (2473)
T KOG0517|consen 1029 NARIAELQALWEQLQQRLQEREERLEEAGGLQRFLRDLDDFQAWLESTQTQ 1079 (2473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555554443311 0122 235788889999999999765443
No 245
>PLN03168 chalcone synthase; Provisional
Probab=30.24 E-value=1.3e+02 Score=33.20 Aligned_cols=54 Identities=15% Similarity=0.172 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEecCC-CChHHHHHHHHhhcCCC
Q 004211 306 KLSSSLLERMRIPCQKALAGSGLNVEKIHSVELVGSG-SRIPAISRMLNSLFNRE 359 (768)
Q Consensus 306 ~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~-srip~v~~~l~~~fg~~ 359 (768)
...+...+-..+..+++|+++|+.+++|+.|+++-.+ -.+|.+--.|.+.+|.+
T Consensus 96 ~~~~~a~~La~~Aa~~AL~~ag~~~~dId~lI~~T~Tg~~~Ps~a~~l~~~LGl~ 150 (389)
T PLN03168 96 IVVVQVPKLAAEAAQKAIKEWGGRKSDITHIVFATTSGVNMPGADHALAKLLGLK 150 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCccHHHHHHHHhCcC
Confidence 3334455555678899999999999999999876432 35899999999999843
No 246
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=30.04 E-value=59 Score=35.23 Aligned_cols=44 Identities=14% Similarity=0.084 Sum_probs=33.5
Q ss_pred CcCEEEEecCCCChHHHHHHHHhhcC--CCC--CCcCCchhHHHhhHH
Q 004211 332 KIHSVELVGSGSRIPAISRMLNSLFN--REP--GRTINASECVARGCA 375 (768)
Q Consensus 332 ~i~~V~LvGG~srip~v~~~l~~~fg--~~v--~~~~n~~eava~GAa 375 (768)
+++.|++.||.+..+.+.+.+.+.+. .++ ....+-.++.|.||.
T Consensus 293 ~pD~IV~gGGI~e~~~l~~~I~~~l~~~a~v~~~pg~~e~~ala~ga~ 340 (351)
T TIGR02707 293 KVDAIVLTGGLAYSKYFVSEIIKRVSFIAPVLVYPGEDEMEALAEGAL 340 (351)
T ss_pred CCCEEEEcchhhcCHHHHHHHHHHHHhhCCEEEeCCcHHHHHHHHhHH
Confidence 57899999999999988899988885 333 333455678888885
No 247
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=29.69 E-value=50 Score=32.82 Aligned_cols=34 Identities=21% Similarity=0.159 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHcCCC---ceeeccchHHHHHHhhh
Q 004211 151 DVQRRAYLDAATIAGLK---PLRLMHDCTATALGYGI 184 (768)
Q Consensus 151 ~~qr~~l~~Aa~~AGl~---~~~li~Ep~Aaal~y~~ 184 (768)
..-.+.+.+|....|++ ++.++|+.+|+.++.++
T Consensus 168 ~dv~~lL~~al~r~~~~~v~v~aivNDTVgTLla~~Y 204 (206)
T PF00349_consen 168 KDVVELLQDALKRRGLPNVKVVAIVNDTVGTLLAGAY 204 (206)
T ss_dssp SBHHHHHHHHHHHHTSSEEEEEEEE-HHHHHHHHHHT
T ss_pred CccchhHHHHHHHhcccCcceEEEEECCHHHhhhhhc
Confidence 33456677777777775 67899999999887654
No 248
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=29.07 E-value=6.6e+02 Score=25.98 Aligned_cols=19 Identities=26% Similarity=0.630 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHH-HHHHhhc
Q 004211 610 EREGISRNLRDT-EEWLYED 628 (768)
Q Consensus 610 e~~~l~~~l~~~-~~WL~~~ 628 (768)
|..+|..+|..+ |||++++
T Consensus 90 EI~eLksQL~RMrEDWIEEE 109 (305)
T PF15290_consen 90 EIDELKSQLARMREDWIEEE 109 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 344444444433 5677664
No 249
>PRK13320 pantothenate kinase; Reviewed
Probab=28.90 E-value=53 Score=33.59 Aligned_cols=22 Identities=23% Similarity=0.255 Sum_probs=19.0
Q ss_pred CeEEEEEcCccceEEEEEEcCC
Q 004211 1 MSVVGFDIGNENCVIAAVKQGG 22 (768)
Q Consensus 1 m~viGID~GTt~s~va~~~~g~ 22 (768)
|.++.||+|+|+++.+++.++.
T Consensus 2 ~M~L~iDiGNT~ik~~~~~~~~ 23 (244)
T PRK13320 2 SMNLVIDIGNTTTKLAVFEGDE 23 (244)
T ss_pred ceEEEEEeCCCcEEEEEEECCE
Confidence 3589999999999999988654
No 250
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=28.90 E-value=31 Score=38.39 Aligned_cols=31 Identities=16% Similarity=0.195 Sum_probs=20.2
Q ss_pred HhCCCCCCCcCEEEEecC-CCChH--HHHHHHHh
Q 004211 324 AGSGLNVEKIHSVELVGS-GSRIP--AISRMLNS 354 (768)
Q Consensus 324 ~~~~~~~~~i~~V~LvGG-~srip--~v~~~l~~ 354 (768)
.+.|.+...++.|+-+|| .++.| ....+++.
T Consensus 381 ~q~GkDL~~v~~vigtGGvL~ha~~~~~~~il~~ 414 (463)
T TIGR01319 381 LQIGKDLLNVKCVIGSGGVLSHASQFDMGEILKA 414 (463)
T ss_pred cccCCCchhCcEEEEeCcceeCCCCcCHHHHHhh
Confidence 344556667889999998 45565 55555543
No 251
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=28.67 E-value=8.5e+02 Score=27.07 Aligned_cols=31 Identities=13% Similarity=0.313 Sum_probs=20.1
Q ss_pred ccHHHHHHHHHHHHHhHhHHHHhhHhHHHHH
Q 004211 632 ESENVYAERLEDLKKLVDPIEGRYKDEEARA 662 (768)
Q Consensus 632 a~~~~~~~kl~~L~~~~~pi~~R~~e~~~rp 662 (768)
+.+...+.|+.+++...+.+..+.++..+..
T Consensus 375 ~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n 405 (493)
T KOG0804|consen 375 AEKKIVERKLQQLQTKLKKCQKELKEEREEN 405 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777777777777777666655433
No 252
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=28.48 E-value=9.7e+02 Score=27.70 Aligned_cols=19 Identities=16% Similarity=0.310 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHhhcC
Q 004211 611 REGISRNLRDTEEWLYEDG 629 (768)
Q Consensus 611 ~~~l~~~l~~~~~WL~~~g 629 (768)
.+++...+..+.+-|++++
T Consensus 220 ~ekl~~~~~~a~~~L~ge~ 238 (557)
T COG0497 220 SEKLAEAIQNALELLSGED 238 (557)
T ss_pred HHHHHHHHHHHHHHHhCCC
Confidence 3456666667777777543
No 253
>KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=28.39 E-value=7.1e+02 Score=26.12 Aligned_cols=50 Identities=18% Similarity=0.085 Sum_probs=32.1
Q ss_pred CEEEEecCCCC-hHHHHHHHHhhc----CCCCCCcCCchhHHHhhHHHHhhHhcC
Q 004211 334 HSVELVGSGSR-IPAISRMLNSLF----NREPGRTINASECVARGCALQCAMLSP 383 (768)
Q Consensus 334 ~~V~LvGG~sr-ip~v~~~l~~~f----g~~v~~~~n~~eava~GAa~~a~~ls~ 383 (768)
=.|+++||.-. ...+++-....+ +.+-.....|.++-|+|||++||.+.+
T Consensus 265 l~Iv~vG~V~~Sw~~l~~Gfl~sls~~~~f~~~~l~~~k~ssAvgAA~laa~~~~ 319 (336)
T KOG1794|consen 265 LPIVCVGGVFDSWDLLQEGFLDSLSDTRGFERVELYRPKESSAVGAAILAASLDN 319 (336)
T ss_pred ceEEEEcchhhHHHHHHHHHHHHhhcccCccceEEEeecccchHHHHHHhhhhcc
Confidence 36999999644 334444333222 122234567888999999999997765
No 254
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=28.34 E-value=64 Score=35.43 Aligned_cols=30 Identities=23% Similarity=0.496 Sum_probs=24.6
Q ss_pred CCCcEEEEEEeCCceEEEEEEEee-CCeEEE
Q 004211 192 VGPTYVVFVDIGHCDTQVCVASYE-NGHMKI 221 (768)
Q Consensus 192 ~~~~~vlv~D~GggT~dvsv~~~~-~~~~~v 221 (768)
...+.+|++|+||..+-+++|++. +|.+.+
T Consensus 72 ~e~g~~LaiD~GGTnlRvc~V~l~g~gt~~~ 102 (466)
T COG5026 72 NESGSVLAIDLGGTNLRVCLVVLGGDGTFDI 102 (466)
T ss_pred CCCCCEEEEecCCceEEEEEEEeCCCCCccc
Confidence 356789999999999999999998 445443
No 255
>PRK04863 mukB cell division protein MukB; Provisional
Probab=28.07 E-value=1.5e+03 Score=29.86 Aligned_cols=16 Identities=6% Similarity=0.291 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHh
Q 004211 611 REGISRNLRDTEEWLY 626 (768)
Q Consensus 611 ~~~l~~~l~~~~~WL~ 626 (768)
.+.|...+..+++|+.
T Consensus 323 L~kLEkQaEkA~kyle 338 (1486)
T PRK04863 323 ESDLEQDYQAASDHLN 338 (1486)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444455443
No 256
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=28.01 E-value=3.4e+02 Score=22.34 Aligned_cols=43 Identities=26% Similarity=0.300 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHhHhHHHHh
Q 004211 612 EGISRNLRDTEEWLYEDGDDESENVYAERLEDLKKLVDPIEGR 654 (768)
Q Consensus 612 ~~l~~~l~~~~~WL~~~g~~a~~~~~~~kl~~L~~~~~pi~~R 654 (768)
+.+..-|.+++.+|...+...+.......+..++.+...|..+
T Consensus 11 ~~l~~Wl~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~ei~~~ 53 (105)
T PF00435_consen 11 DELLDWLQETEAKLSSSEPGSDLEELEEQLKKHKELQEEIESR 53 (105)
T ss_dssp HHHHHHHHHHHHHHCSCTHSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhhhhHHHHH
Confidence 3334444444444422222345556666666666555555443
No 257
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=27.42 E-value=7.9e+02 Score=29.87 Aligned_cols=16 Identities=13% Similarity=0.096 Sum_probs=11.6
Q ss_pred CCCHHHHHHHHHHHHH
Q 004211 554 GMTKTELSEAVEKEHQ 569 (768)
Q Consensus 554 ~ls~~e~~~~~~~~~~ 569 (768)
+++.+-++++.+.+..
T Consensus 493 Glp~~ii~~A~~~~~~ 508 (771)
T TIGR01069 493 GIPHFIIEQAKTFYGE 508 (771)
T ss_pred CcCHHHHHHHHHHHHh
Confidence 6888888777776554
No 258
>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination []. RuvC protein (3.1.22.4 from EC) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo []. RucC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli ruvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices [].; GO: 0004520 endodeoxyribonuclease activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJR_A.
Probab=27.33 E-value=37 Score=31.75 Aligned_cols=35 Identities=26% Similarity=0.340 Sum_probs=0.0
Q ss_pred EEEEEcCccceEEEEEEcCCceEEEeCCCCCccceE
Q 004211 3 VVGFDIGNENCVIAAVKQGGMLDVLLNDESKRETPT 38 (768)
Q Consensus 3 viGID~GTt~s~va~~~~g~~~~ii~n~~~~r~~Ps 38 (768)
|+|||-|++++..|++...+ -.+..-+.|--.+++
T Consensus 1 ILGIDPgl~~tG~avi~~~~-~~~~~i~~G~I~t~~ 35 (149)
T PF02075_consen 1 ILGIDPGLSNTGYAVIEEDG-GKLRLIDYGTIKTSS 35 (149)
T ss_dssp EEEEE--SSEEEEEEEEEET-TEEEEEEEEEEE---
T ss_pred CEEECCCCCCeeEEEEEeeC-CEEEEEEeCeEECCC
No 259
>PF05537 DUF759: Borrelia burgdorferi protein of unknown function (DUF759); InterPro: IPR008478 This entry consists of several uncharacterised proteins from Borrelia species including Borrelia burgdorferi and Borrelia garinii.
Probab=27.31 E-value=2.6e+02 Score=30.43 Aligned_cols=57 Identities=16% Similarity=0.223 Sum_probs=34.3
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccHH--HHHHHHHHHHHHhhhhc
Q 004211 684 LPSKVRDAVIDECSKAEEWLREKVTQQDSLPKDADPILWST--EIKRKSEALDLTCKCIM 741 (768)
Q Consensus 684 ~~~~e~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~--di~~k~~~l~~~~~~i~ 741 (768)
+|..=+++|++.+.+...|+.+-+.... ...--+|++..- -+..-...|...+..++
T Consensus 351 lTt~vL~PLL~~is~IIe~VkD~i~~Ft-~t~Ii~~i~~giks~f~~iF~kLk~~lp~wm 409 (431)
T PF05537_consen 351 LTTNVLKPLLKKISEIIEWVKDYINNFT-ETHIINPIINGIKSIFAGIFDKLKSMLPKWM 409 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc-ccccchHHHHHHHHHHHHHHHHHHHHhHHhh
Confidence 4555589999999999999888766544 222234443221 11111455666677777
No 260
>KOG0797 consensus Actin-related protein [Cytoskeleton]
Probab=26.78 E-value=22 Score=39.47 Aligned_cols=50 Identities=22% Similarity=0.291 Sum_probs=38.8
Q ss_pred cCEEEEecCCCChHHHHHHHHhhcC------CC------C---CCcCCchhHHHhhHHHHhhHhc
Q 004211 333 IHSVELVGSGSRIPAISRMLNSLFN------RE------P---GRTINASECVARGCALQCAMLS 382 (768)
Q Consensus 333 i~~V~LvGG~srip~v~~~l~~~fg------~~------v---~~~~n~~eava~GAa~~a~~ls 382 (768)
.+.|.+|||+...|.+.+.|++..- .+ | .+..||...+=.|||++|.+-.
T Consensus 527 ~sSil~Vgga~~~~g~~~~LEeRi~n~~pp~~~~I~~VsVip~prdMdp~~VaWKGaaIla~l~~ 591 (618)
T KOG0797|consen 527 FSSILLVGGAGLFPGLVAALEERILNAIPPGREAIDTVSVIPPPRDMDPQFVAWKGAAILAILDF 591 (618)
T ss_pred hhHHHhhcccccchhHHHHHHHHHhccCCccccccCceeecCCCcCCCchheEecchhhhhHHHH
Confidence 4789999999999999999987762 11 1 2336788888899999987544
No 261
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=26.60 E-value=1.2e+03 Score=28.02 Aligned_cols=113 Identities=18% Similarity=0.233 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHhHhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHH----------Hh
Q 004211 612 EGISRNLRDTEEWLYEDGDDESENVYAERLEDLKKLVDPIEGRYKDEEARAQATGALLKCAMDYRKVV----------EA 681 (768)
Q Consensus 612 ~~l~~~l~~~~~WL~~~g~~a~~~~~~~kl~~L~~~~~pi~~R~~e~~~rp~a~~~l~~~l~~~~~~~----------~~ 681 (768)
+.....|++++.||. .|..+|..+++-+.-|+.+-+-.+--...-..|.+.|+.+...+ ..
T Consensus 40 d~a~~e~d~le~~l~---------~y~~~L~~~~~di~~IE~qn~~Lqvq~~N~k~L~~eL~~Ll~~l~i~~~~l~~L~~ 110 (701)
T PF09763_consen 40 DEALAECDELESWLS---------LYDVELNSVRDDIEYIESQNNGLQVQSANQKLLLNELENLLDTLSIPEEHLEALRN 110 (701)
T ss_pred HHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhc
Confidence 566777888888884 45667777776666666654444333344444444444333332 01
Q ss_pred CCCChhh-HHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcc-cHHHHHHHHHHHHHHh
Q 004211 682 HSLPSKV-RDAVIDECSKAEEWLREKVTQQDSLPKDADPIL-WSTEIKRKSEALDLTC 737 (768)
Q Consensus 682 ~~~~~~e-~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~-~~~di~~k~~~l~~~~ 737 (768)
..++..+ +..+ .+.-.||...+..-.......+|-+ ...-+..+...+++..
T Consensus 111 ~~l~~~~~l~~~----e~a~~~L~~Al~~i~~~~~~~~~~~~~M~Av~er~~~~~~~~ 164 (701)
T PF09763_consen 111 ASLSSPDGLEKI----EEAAEALYKALKAIRPDLEKLDPGLGQMRAVKERREEYEKVS 164 (701)
T ss_pred CCCCCcccHHHH----HHHHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHHHHHHH
Confidence 1133322 4433 4455666665554333222555555 7777788777777643
No 262
>KOG3133 consensus 40 kDa farnesylated protein associated with peroxisomes [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.55 E-value=3.8e+02 Score=27.40 Aligned_cols=63 Identities=21% Similarity=0.269 Sum_probs=40.6
Q ss_pred hhHHHHHHHHHHHHhhHhhccCCHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHhHhHHHHh
Q 004211 585 NALESYVYEMRDKISNIYRSFATESEREGISRNLRDTEEWLYEDGDDESENVYAERLEDLKKLVDPIEGR 654 (768)
Q Consensus 585 N~LEs~iy~~r~~l~~~~~~~~t~~e~~~l~~~l~~~~~WL~~~g~~a~~~~~~~kl~~L~~~~~pi~~R 654 (768)
|.||.++-.|-+.|-.. ++ =-+-+.+....+=.||.++++...+ +..+|++.-.+++..|..-
T Consensus 142 g~le~~m~~iMqqllSK--EI----LyeplKEl~~~YPkwLeen~e~l~~-E~~erYqkQ~~~i~~i~~~ 204 (267)
T KOG3133|consen 142 GDLEPIMESIMQQLLSK--EI----LYEPLKELGANYPKWLEENGESLSK-EDKERYQKQFELIKEIESV 204 (267)
T ss_pred ccHHHHHHHHHHHHHHH--HH----hhhhHHHHHHHhhHHHHhcccccCH-HHHHHHHHHHHHHHHHHHH
Confidence 67777777766655321 11 1256778888999999999877644 3455666666666655543
No 263
>PF07765 KIP1: KIP1-like protein; InterPro: IPR011684 This is a group of sequences found exclusively in plants. They are similar to kinase interacting protein 1 (KIP1), which has been found to interact with the kinase domain of PRK1, a receptor-like kinase []. This particular region contains two coiled-coils, which are described as motifs involved in protein-protein interactions []. It has also been suggested that the coiled-coils of the protein allow it to dimerise in vivo [].
Probab=26.51 E-value=88 Score=25.30 Aligned_cols=36 Identities=14% Similarity=0.153 Sum_probs=25.4
Q ss_pred HHHhHhHHHHhhHh-HHHHHHHHHHHHHHHHHHHHHH
Q 004211 644 LKKLVDPIEGRYKD-EEARAQATGALLKCAMDYRKVV 679 (768)
Q Consensus 644 L~~~~~pi~~R~~e-~~~rp~a~~~l~~~l~~~~~~~ 679 (768)
|+.-++....|++- +..||+.|+.+...-..++..+
T Consensus 34 ieedgdSfakrAEmyy~kRp~Li~~vee~yr~YrsLA 70 (74)
T PF07765_consen 34 IEEDGDSFAKRAEMYYKKRPELISLVEEFYRSYRSLA 70 (74)
T ss_pred hccCcchHHHhhHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 33334455666654 6789999998888888887776
No 264
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=26.17 E-value=2e+02 Score=29.49 Aligned_cols=72 Identities=14% Similarity=0.268 Sum_probs=43.9
Q ss_pred EEEEEEeCCceEEEEEEEeeCC-eE----------------------EEEEEeCCCCCchhhHHHHHHHHHHHHHhhhcc
Q 004211 196 YVVFVDIGHCDTQVCVASYENG-HM----------------------KILSHAFDESLGGRDFDEVLSSYFAAQFKQQYD 252 (768)
Q Consensus 196 ~vlv~D~GggT~dvsv~~~~~~-~~----------------------~vl~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~ 252 (768)
++|++|+|.||.|+-.+.-... .+ .-+... +...||--.+.++..|+..-
T Consensus 2 kila~DvG~GTqDi~~~d~~~EnSl~mVmPspt~~~A~R~R~~~~~g~~l~l~-G~~MGGGp~travrrhlk~G------ 74 (342)
T COG4012 2 KILAIDVGVGTQDIVAYDGDPENSLRMVMPSPTSTLAQRLRFMLREGPYLALI-GVPMGGGPTTRAVRRHLKKG------ 74 (342)
T ss_pred ceEEEEecCCceeEEEecCCcccceeEeecCchHHHHHHHHHHhccCCcEEEE-eeecCCChhhHHHHHHHhcC------
Confidence 5799999999999877654310 00 011222 46789999999999988642
Q ss_pred cCccCChHHHHHHHHHHHHHhh
Q 004211 253 IDVYTNVKASIRLRASCEKLKK 274 (768)
Q Consensus 253 ~~~~~~~~~~~rL~~~ae~~K~ 274 (768)
..+-..+++-.-|..-.|+++.
T Consensus 75 ~rVyatedAAlT~hddleRv~e 96 (342)
T COG4012 75 TRVYATEDAALTLHDDLERVEE 96 (342)
T ss_pred CeeEechhhhhhhhcCHHHHHh
Confidence 2233334444444455555554
No 265
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=26.07 E-value=1.1e+03 Score=27.48 Aligned_cols=168 Identities=13% Similarity=0.141 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHHHHHHHhh---HhhccCC--HHHHHHHHHHHHHHHHHHhhcCCC
Q 004211 557 KTELSEAVEKEHQLVQQDLKMERTKDRKNALESYVYEMRDKISN---IYRSFAT--ESEREGISRNLRDTEEWLYEDGDD 631 (768)
Q Consensus 557 ~~e~~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~---~~~~~~t--~~e~~~l~~~l~~~~~WL~~~g~~ 631 (768)
.+++..+...+..+...+...| .+-..|...--.+|..|-. .|..... +...+.+....++..+|.......
T Consensus 118 e~~~~~i~~~l~~l~~~e~~nr---~~v~~l~~~y~~~rk~ll~~~~~~G~a~~~le~~l~~~e~~f~~f~~l~~~Gd~~ 194 (569)
T PRK04778 118 EEDIEQILEELQELLESEEKNR---EEVEQLKDLYRELRKSLLANRFSFGPALDELEKQLENLEEEFSQFVELTESGDYV 194 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHhcCCCHH
Q ss_pred ccHH---HHHHHHHHHHHhHhHHHHhhHhHHH-HHHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHHHHHH
Q 004211 632 ESEN---VYAERLEDLKKLVDPIEGRYKDEEA-RAQATGALLKCAMDYRKVVEAHSLPSKVRDAVIDECSKAEEWLREKV 707 (768)
Q Consensus 632 a~~~---~~~~kl~~L~~~~~pi~~R~~e~~~-rp~a~~~l~~~l~~~~~~~~~~~~~~~e~~~v~~~~~~~~~Wl~~~~ 707 (768)
...+ .+.+.+..|...+.-|-.-+.+... .|..++.|+.-.......- -.++.-++..-...+.+...-....+
T Consensus 195 ~A~e~l~~l~~~~~~l~~~~~~iP~l~~~~~~~~P~ql~el~~gy~~m~~~g--y~~~~~~i~~~i~~l~~~i~~~~~~l 272 (569)
T PRK04778 195 EAREILDQLEEELAALEQIMEEIPELLKELQTELPDQLQELKAGYRELVEEG--YHLDHLDIEKEIQDLKEQIDENLALL 272 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcC--CCCCCCChHHHHHHHHHHHHHHHHHH
Q ss_pred HhhhcCCCCCCCcccHHHHHHHHHHHHHHhhhh
Q 004211 708 TQQDSLPKDADPILWSTEIKRKSEALDLTCKCI 740 (768)
Q Consensus 708 ~~q~~~~~~~dP~~~~~di~~k~~~l~~~~~~i 740 (768)
..-+- .++..+.+.+...+..+
T Consensus 273 ~~l~l-----------~~~~~~~~~i~~~Id~L 294 (569)
T PRK04778 273 EELDL-----------DEAEEKNEEIQERIDQL 294 (569)
T ss_pred HhcCh-----------HHHHHHHHHHHHHHHHH
No 266
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=25.97 E-value=1e+03 Score=27.01 Aligned_cols=43 Identities=19% Similarity=0.173 Sum_probs=35.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccHHHHHH
Q 004211 686 SKVRDAVIDECSKAEEWLREKVTQQDSLPKDADPILWSTEIKR 728 (768)
Q Consensus 686 ~~e~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~ 728 (768)
..|..++.+...+....|.+..++.+.+-....|-+.+.....
T Consensus 274 ~aE~~EleDkyAE~m~~~~EaeeELk~lrs~~~p~~~s~~~~~ 316 (596)
T KOG4360|consen 274 TAELEELEDKYAECMQMLHEAEEELKCLRSCDAPKLISQEALS 316 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHHHHH
Confidence 3467788888889999999999999999999999888776554
No 267
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=25.84 E-value=38 Score=38.47 Aligned_cols=19 Identities=26% Similarity=0.543 Sum_probs=16.6
Q ss_pred EEEEcCccceEEEEEEcCC
Q 004211 4 VGFDIGNENCVIAAVKQGG 22 (768)
Q Consensus 4 iGID~GTt~s~va~~~~g~ 22 (768)
||||+||+++++++++..+
T Consensus 1 lgIDiGtt~ik~~l~d~~g 19 (481)
T TIGR01312 1 LGIDLGTSGVKALLVDEQG 19 (481)
T ss_pred CceeecCcceEEEEECCCC
Confidence 6999999999999997544
No 268
>PRK13324 pantothenate kinase; Reviewed
Probab=25.66 E-value=64 Score=33.29 Aligned_cols=20 Identities=20% Similarity=0.353 Sum_probs=17.5
Q ss_pred EEEEEcCccceEEEEEEcCC
Q 004211 3 VVGFDIGNENCVIAAVKQGG 22 (768)
Q Consensus 3 viGID~GTt~s~va~~~~g~ 22 (768)
++.||+|+|+++.+++..++
T Consensus 2 iL~iDiGNT~ik~gl~~~~~ 21 (258)
T PRK13324 2 LLVMDMGNSHIHIGVFDGDR 21 (258)
T ss_pred EEEEEeCCCceEEEEEECCE
Confidence 78999999999999988544
No 269
>KOG1369 consensus Hexokinase [Carbohydrate transport and metabolism]
Probab=25.56 E-value=3e+02 Score=31.00 Aligned_cols=27 Identities=15% Similarity=0.263 Sum_probs=23.6
Q ss_pred CCCcEEEEEEeCCceEEEEEEEeeCCe
Q 004211 192 VGPTYVVFVDIGHCDTQVCVASYENGH 218 (768)
Q Consensus 192 ~~~~~vlv~D~GggT~dvsv~~~~~~~ 218 (768)
.+...++.+|+||..+-+..+.+.++.
T Consensus 83 ~E~G~~lalDLGGTn~Rv~~v~L~g~~ 109 (474)
T KOG1369|consen 83 TEKGKFLALDLGGTNFRVLLVKLGGGR 109 (474)
T ss_pred CcCCCEEEEecCCCceEEEEEEecCCc
Confidence 456779999999999999999998763
No 270
>PF01548 DEDD_Tnp_IS110: Transposase; InterPro: IPR002525 Transposase proteins are necessary for efficient DNA transposition. This entry represents the N-terminal region of the pilin gene inverting protein (PIVML) and members of the IS111A/IS1328/IS1533 family of transposases [, ]. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=25.50 E-value=92 Score=28.52 Aligned_cols=20 Identities=20% Similarity=0.554 Sum_probs=18.0
Q ss_pred EEEEEcCccceEEEEEEcCC
Q 004211 3 VVGFDIGNENCVIAAVKQGG 22 (768)
Q Consensus 3 viGID~GTt~s~va~~~~g~ 22 (768)
+||||+|-.+..++++.+++
T Consensus 1 ~vGiDv~k~~~~v~v~~~~~ 20 (144)
T PF01548_consen 1 FVGIDVSKDTHDVCVIDPNG 20 (144)
T ss_pred eEEEEcccCeEEEEEEcCCC
Confidence 69999999999999988776
No 271
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=25.38 E-value=35 Score=38.49 Aligned_cols=18 Identities=17% Similarity=0.257 Sum_probs=16.0
Q ss_pred EEEEcCccceEEEEEEcC
Q 004211 4 VGFDIGNENCVIAAVKQG 21 (768)
Q Consensus 4 iGID~GTt~s~va~~~~g 21 (768)
+|||+|||++++++++..
T Consensus 1 ~aiD~Gtt~~k~~l~~~~ 18 (454)
T TIGR02627 1 VAVDLGASSGRVMLASYE 18 (454)
T ss_pred CcEeccCCchheEEEEEc
Confidence 589999999999998754
No 272
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=25.34 E-value=57 Score=36.93 Aligned_cols=17 Identities=24% Similarity=0.511 Sum_probs=16.1
Q ss_pred EEEEEcCccceEEEEEE
Q 004211 3 VVGFDIGNENCVIAAVK 19 (768)
Q Consensus 3 viGID~GTt~s~va~~~ 19 (768)
++|||.|||.+++++++
T Consensus 8 ~~gIDvGTtSaR~~v~~ 24 (516)
T KOG2517|consen 8 VLGIDVGTTSARALVFN 24 (516)
T ss_pred EEEEEcCCCceEEEEEe
Confidence 78999999999999987
No 273
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=25.03 E-value=9.2e+02 Score=28.80 Aligned_cols=44 Identities=18% Similarity=0.170 Sum_probs=27.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhcCC-CCCCCcccHHHHHHHH
Q 004211 687 KVRDAVIDECSKAEEWLREKVTQQDSLP-KDADPILWSTEIKRKS 730 (768)
Q Consensus 687 ~e~~~v~~~~~~~~~Wl~~~~~~q~~~~-~~~dP~~~~~di~~k~ 730 (768)
.=+..|...+++...++-+..+.--+.| .|.-|.|+.+.|-.+.
T Consensus 130 ~vlg~l~~EIe~~~~~vfemeE~R~~Sp~~~~lp~~~Le~Ive~~ 174 (683)
T PF08580_consen 130 DVLGDLDNEIEECIRLVFEMEEKRHSSPVRHGLPIFELETIVEEM 174 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCcccCCCcccHHHHHHhc
Confidence 3455666667777777766666555555 5556777766666555
No 274
>PF09286 Pro-kuma_activ: Pro-kumamolisin, activation domain ; InterPro: IPR015366 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found at the N terminus of peptidases belonging to MEROPS peptidase family S53 (sedolisin, clan SB). The domain adopts a ferredoxin-like fold, with an alpha+beta sandwich. Cleavage of the domain results in activation of the peptidase []. ; GO: 0008236 serine-type peptidase activity; PDB: 1T1E_A 3EDY_A 3EE6_A.
Probab=24.89 E-value=94 Score=28.64 Aligned_cols=47 Identities=28% Similarity=0.441 Sum_probs=31.9
Q ss_pred HhhHHHHHHHHHHHHhhHhhccCCHHHHHHH----HHHHHHHHHHHhhcCC
Q 004211 584 KNALESYVYEMRDKISNIYRSFATESEREGI----SRNLRDTEEWLYEDGD 630 (768)
Q Consensus 584 kN~LEs~iy~~r~~l~~~~~~~~t~~e~~~l----~~~l~~~~~WL~~~g~ 630 (768)
.+.||.+++++.+=-...|.++.|.+|-.++ .+.++.+..||...|-
T Consensus 26 ~~~L~~~l~~vsdP~s~~Ygk~Lt~~e~~~~~~p~~~~v~~V~~wL~~~G~ 76 (143)
T PF09286_consen 26 LDALEQYLAEVSDPGSPNYGKYLTPEEFAALFAPSPEDVAAVKSWLKSHGL 76 (143)
T ss_dssp HHHHHHHHHHHHTTTSTTTT----HHHHHHHHS--HHHHHHHHHHHHHCT-
T ss_pred HHHHHHHHHhCcCCCCcccccCCCHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 3578888888766444468889999888775 3568889999998873
No 275
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=24.89 E-value=9.1e+02 Score=26.17 Aligned_cols=14 Identities=29% Similarity=0.297 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHH
Q 004211 610 EREGISRNLRDTEE 623 (768)
Q Consensus 610 e~~~l~~~l~~~~~ 623 (768)
|...|...++.+-.
T Consensus 264 el~siRr~Cd~lP~ 277 (442)
T PF06637_consen 264 ELESIRRTCDHLPK 277 (442)
T ss_pred hHHHHHHHHhhchH
Confidence 46666666654433
No 276
>PLN02192 3-ketoacyl-CoA synthase
Probab=24.88 E-value=1.9e+02 Score=33.00 Aligned_cols=56 Identities=14% Similarity=0.096 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEecC-CCChHHHHHHHHhhcCCC
Q 004211 304 FEKLSSSLLERMRIPCQKALAGSGLNVEKIHSVELVGS-GSRIPAISRMLNSLFNRE 359 (768)
Q Consensus 304 fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG-~srip~v~~~l~~~fg~~ 359 (768)
+++..++...-+...++++|+++|+++++|+.|+.... ....|.+-.+|.+.+|..
T Consensus 169 ~~~~~~Ea~~~~~~Aa~~aL~kaGi~p~DIDiLIv~~S~~~~~PSlaa~I~n~lGlr 225 (511)
T PLN02192 169 MAEARKEAETVMFGAIDQLLAKTSVKPKDIGILIVNCSLFNPTPSLSAMVINHYKLR 225 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCchHHHHHHHHhCCC
Confidence 34444444555667788999999999999998876532 235899999999999854
No 277
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=24.81 E-value=7.8e+02 Score=25.39 Aligned_cols=39 Identities=28% Similarity=0.498 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHhH
Q 004211 608 ESEREGISRNLRDTEEWLYEDGDDESENVYAERLEDLKKLV 648 (768)
Q Consensus 608 ~~e~~~l~~~l~~~~~WL~~~g~~a~~~~~~~kl~~L~~~~ 648 (768)
...++++...|..-..||.+. ..-.+.+..+.++|++-.
T Consensus 109 q~KnekLke~LerEq~wL~Eq--qql~~sL~~r~~elk~~~ 147 (268)
T PF11802_consen 109 QSKNEKLKEDLEREQQWLDEQ--QQLLESLNKRHEELKNQV 147 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhh
Confidence 445688899999999999885 333445666666666533
No 278
>COG3894 Uncharacterized metal-binding protein [General function prediction only]
Probab=24.79 E-value=2.1e+02 Score=32.13 Aligned_cols=47 Identities=19% Similarity=0.251 Sum_probs=34.0
Q ss_pred CcEEEEEEeCCceEEEEEEEeeCCeEE-EEEEeCCCCCchhhHHHHHH
Q 004211 194 PTYVVFVDIGHCDTQVCVASYENGHMK-ILSHAFDESLGGRDFDEVLS 240 (768)
Q Consensus 194 ~~~vlv~D~GggT~dvsv~~~~~~~~~-vl~~~~~~~lGG~~~d~~l~ 240 (768)
..+=+-+|+|.+++-+-++.+..+.+. ...+....--||+++|.+..
T Consensus 163 ~~YGvAvDlGTS~i~aqlVDL~sgevv~t~~T~n~ql~~Ge~m~sr~~ 210 (614)
T COG3894 163 EAYGVAVDLGTSGIRAQLVDLKSGEVVATVITSNPQLPGGEVMDSRDF 210 (614)
T ss_pred eeeeeEEecccceeeeEEEeccCCcEEEeeeccCCCCCCchhhHHHHH
Confidence 345588999999999999999877542 22333334469999988764
No 279
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=24.61 E-value=56 Score=36.41 Aligned_cols=17 Identities=35% Similarity=0.526 Sum_probs=14.6
Q ss_pred EEEEEEeCCceEEEEEE
Q 004211 196 YVVFVDIGHCDTQVCVA 212 (768)
Q Consensus 196 ~vlv~D~GggT~dvsv~ 212 (768)
.+|++|+||-|||+--+
T Consensus 250 ~ll~VDIGGATTDvhSv 266 (463)
T TIGR01319 250 DFILIDIGGATTDVHSA 266 (463)
T ss_pred CEEEEEcCccccchhhc
Confidence 59999999999997544
No 280
>PRK00180 acetate kinase A/propionate kinase 2; Reviewed
Probab=24.57 E-value=1.5e+02 Score=32.62 Aligned_cols=48 Identities=4% Similarity=-0.029 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEecCCC-ChHHHHHHHHhhcC
Q 004211 307 LSSSLLERMRIPCQKALAGSGLNVEKIHSVELVGSGS-RIPAISRMLNSLFN 357 (768)
Q Consensus 307 ~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~s-rip~v~~~l~~~fg 357 (768)
.++-++.++.+.|-...... ...+|.|+++||.+ ..+.|++.|.+.++
T Consensus 301 A~d~f~yri~k~Iga~~a~L---~g~vDaiVfTGGIgE~s~~lr~~I~~~l~ 349 (402)
T PRK00180 301 ALDVFVYRLAKYIGSYAAAL---NGRLDAIVFTAGIGENSALVREKVLEGLE 349 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHh---cCCCCEEEEcCccccCCHHHHHHHHhhhh
Confidence 33445556666665555443 12699999999999 99999999998774
No 281
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=24.26 E-value=1.3e+03 Score=27.69 Aligned_cols=16 Identities=19% Similarity=0.574 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 004211 610 EREGISRNLRDTEEWL 625 (768)
Q Consensus 610 e~~~l~~~l~~~~~WL 625 (768)
-|.++.+.-+.-.+|+
T Consensus 417 r~qem~~Qk~reqe~i 432 (1118)
T KOG1029|consen 417 RRQEMLNQKNREQEWI 432 (1118)
T ss_pred HHHHHHhhhhHHHHHH
Confidence 3455555666666675
No 282
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=23.79 E-value=1.5e+03 Score=28.17 Aligned_cols=39 Identities=13% Similarity=0.178 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCCCcccHHHHHHHHHH
Q 004211 694 DECSKAEEWLREKVTQQDSLPKDADPILWSTEIKRKSEA 732 (768)
Q Consensus 694 ~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~ 732 (768)
..+..+..-+.+..+...+.+.+++|+....++..+...
T Consensus 339 ~~i~~~~k~i~~~q~el~~~~~~e~~~~~~~ei~~~~~~ 377 (1072)
T KOG0979|consen 339 KRIEKAKKMILDAQAELQETEDPENPVEEDQEIMKEVLQ 377 (1072)
T ss_pred HHHHHHHHHHHHHHhhhhhcCCccccchhHHHHHHHHHH
Confidence 334455555556556666666777777776666554433
No 283
>PF13941 MutL: MutL protein
Probab=23.72 E-value=1.9e+02 Score=32.55 Aligned_cols=47 Identities=23% Similarity=0.282 Sum_probs=33.6
Q ss_pred EEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCCchh-hHHHHHHHHH
Q 004211 197 VVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGR-DFDEVLSSYF 243 (768)
Q Consensus 197 vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~-~~d~~l~~~l 243 (768)
+|++|||+.+|-++++....+..++++.+....--.. |+...+.+-+
T Consensus 2 ~L~~DiGST~Tk~~l~d~~~~~~~~ig~a~apTTv~~~Dv~~G~~~A~ 49 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLFDLVDGEPRLIGQAEAPTTVEPGDVTIGLNNAL 49 (457)
T ss_pred EEEEEeCCcceEEeEEeccCCccEEEEEEeCCCCcCcccHHHHHHHHH
Confidence 7999999999999999976777778877643332233 6666555444
No 284
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=23.42 E-value=6.5e+02 Score=23.94 Aligned_cols=34 Identities=18% Similarity=0.110 Sum_probs=15.6
Q ss_pred HHHHHHHHHHhhhcCCCCCCCcccHHHHHHHHHHHHHH
Q 004211 699 AEEWLREKVTQQDSLPKDADPILWSTEIKRKSEALDLT 736 (768)
Q Consensus 699 ~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~ 736 (768)
...|+.+........+.-. ...++...+..++..
T Consensus 118 l~~wl~~~e~~l~~~~~~~----~~~~~~~~l~~~~~~ 151 (213)
T cd00176 118 LEQWLEEKEAALASEDLGK----DLESVEELLKKHKEL 151 (213)
T ss_pred HHHHHHHHHHHhcCcccCC----CHHHHHHHHHHHHHH
Confidence 5666666555444332221 344444444444433
No 285
>PRK03918 chromosome segregation protein; Provisional
Probab=23.41 E-value=1.4e+03 Score=27.97 Aligned_cols=62 Identities=16% Similarity=0.176 Sum_probs=34.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHhHhHHHHhhHhHHHHHHHHHHHH
Q 004211 606 ATESEREGISRNLRDTEEWLYEDGDDESENVYAERLEDLKKLVDPIEGRYKDEEARAQATGALL 669 (768)
Q Consensus 606 ~t~~e~~~l~~~l~~~~~WL~~~g~~a~~~~~~~kl~~L~~~~~pi~~R~~e~~~rp~a~~~l~ 669 (768)
.++++.+.+...+..++..+.+- ....+.+..++..|+.-..-+..........-..+..++
T Consensus 656 ~~~~~~~~l~~~~~~l~~~l~~l--~~~~~~l~~~i~~l~~~i~~~~~~~~~l~~~~~~~~~l~ 717 (880)
T PRK03918 656 YSEEEYEELREEYLELSRELAGL--RAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLE 717 (880)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677777888888887777542 234455566666666555555444433333333333333
No 286
>PTZ00432 falcilysin; Provisional
Probab=23.36 E-value=8.4e+02 Score=31.17 Aligned_cols=47 Identities=19% Similarity=0.224 Sum_probs=27.9
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccHHHHHHHHH
Q 004211 682 HSLPSKVRDAVIDECSKAEEWLREKVTQQDSLPKDADPILWSTEIKRKSE 731 (768)
Q Consensus 682 ~~~~~~e~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~ 731 (768)
.++++++++.+.....+++.|=+.- ...-....=|.++.+||..+..
T Consensus 596 ~~Ls~ee~~~i~~~~~~l~~~q~~~---~~~e~l~~lP~l~~~DI~~~~~ 642 (1119)
T PTZ00432 596 SHLTKEQVDEMEKAYEKFKKEREAD---DDPEHLDSFPILSLSDLNKETE 642 (1119)
T ss_pred HhCCHHHHHHHHHHHHHHHHHhcCC---CChhHHhhcCCCcHHHcCCccc
Confidence 4579999999988877776653220 0000022246788888775443
No 287
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=23.34 E-value=8.8e+02 Score=25.97 Aligned_cols=79 Identities=19% Similarity=0.268 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHhHhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHHHHHHHhhhcC
Q 004211 634 ENVYAERLEDLKKLVDPIEGRYKDEEARAQATGALLKCAMDYRKVVEAHSLPSKVRDAVIDECSKAEEWLREKVTQQDSL 713 (768)
Q Consensus 634 ~~~~~~kl~~L~~~~~pi~~R~~e~~~rp~a~~~l~~~l~~~~~~~~~~~~~~~e~~~v~~~~~~~~~Wl~~~~~~q~~~ 713 (768)
-..|.+|++++.++.+....-+.-...|- ..+..+|.+.+.-. .....+.++++...+.+.+.=+.+.. .-+
T Consensus 20 hr~Y~qKleel~~lQ~~C~ssI~~QkkrL---k~L~~sLk~~~~~~--~~e~~~~i~~L~~~Ik~r~~~l~DmE---a~L 91 (330)
T PF07851_consen 20 HRSYKQKLEELSKLQDKCSSSISHQKKRL---KELKKSLKRCKKSL--SAEERELIEKLEEDIKERRCQLFDME---AFL 91 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhccCC--ChhHHHHHHHHHHHHHHHHhhHHHHH---hhC
Confidence 35677888888777665555444444442 33333333332222 11233445566665655555555544 345
Q ss_pred CCCCCCcc
Q 004211 714 PKDADPIL 721 (768)
Q Consensus 714 ~~~~dP~~ 721 (768)
|.. ++.+
T Consensus 92 Pkk-NGly 98 (330)
T PF07851_consen 92 PKK-NGLY 98 (330)
T ss_pred CCC-CCcc
Confidence 554 4433
No 288
>PRK07515 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=23.30 E-value=77 Score=34.62 Aligned_cols=48 Identities=10% Similarity=0.069 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEecCCCChHHHHHHHHhhcC
Q 004211 308 SSSLLERMRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFN 357 (768)
Q Consensus 308 ~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~fg 357 (768)
++.....+...|+++|+++|+++++|+.+++.+++.++-- ..+++.||
T Consensus 266 ~~~~~~~~~~~i~~~L~~~gl~~~dId~~~~Hq~~~~~~d--~~~~~llg 313 (372)
T PRK07515 266 FKEVCPMVAEHIVEHLAENGLTPADVKRFWLHQANINMNQ--LIGKKVLG 313 (372)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHCCEEEECCCCHHHHH--HHHHHhcc
Confidence 3455667778899999999999999999999999988542 22334455
No 289
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=23.15 E-value=5.1e+02 Score=25.28 Aligned_cols=48 Identities=23% Similarity=0.371 Sum_probs=28.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHhhHhhccCCHHHHHHHHHHHHHHHHHHh
Q 004211 577 MERTKDRKNALESYVYEMRDKISNIYRSFATESEREGISRNLRDTEEWLY 626 (768)
Q Consensus 577 ~~~~~~akN~LEs~iy~~r~~l~~~~~~~~t~~e~~~l~~~l~~~~~WL~ 626 (768)
.+..+..+.+||.-|-+++.+++.+ +..++++|+.-..+.++..++|.
T Consensus 194 ~k~le~~k~~Le~~ia~~k~K~e~~--e~r~~E~r~ieEkk~~eei~fLk 241 (259)
T KOG4001|consen 194 WKVLEDKKKELELKIAQLKKKLETD--EIRSEEEREIEEKKMKEEIEFLK 241 (259)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHH
Confidence 3344556667777777777766532 34456666666666666666664
No 290
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=23.11 E-value=1.7e+03 Score=28.71 Aligned_cols=50 Identities=22% Similarity=0.354 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHhh----cCCC-ccHHHHHHHHHHHHHhHhHHHHhhHh
Q 004211 608 ESEREGISRNLRDTEEWLYE----DGDD-ESENVYAERLEDLKKLVDPIEGRYKD 657 (768)
Q Consensus 608 ~~e~~~l~~~l~~~~~WL~~----~g~~-a~~~~~~~kl~~L~~~~~pi~~R~~e 657 (768)
.+.+..+...+.+++.|+.. .|-| .....|++++++|.+...-|..+..+
T Consensus 742 ~~~~~~~~~~~~~le~~~~~eL~~~GvD~~~I~~l~~~i~~L~~~l~~ie~~r~~ 796 (1201)
T PF12128_consen 742 AAAKQEAKEQLKELEQQYNQELAGKGVDPERIQQLKQEIEQLEKELKRIEERRAE 796 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 44567777888899999876 3544 47788899999998888777654433
No 291
>PRK12440 acetate kinase; Reviewed
Probab=23.07 E-value=3.6e+02 Score=29.66 Aligned_cols=46 Identities=13% Similarity=0.063 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEecCCCChHH-HHHHHHhhcC
Q 004211 308 SSSLLERMRIPCQKALAGSGLNVEKIHSVELVGSGSRIPA-ISRMLNSLFN 357 (768)
Q Consensus 308 ~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~-v~~~l~~~fg 357 (768)
++-++.++.+.|-......+ .+|.|+++||-+.... +++.+.+.++
T Consensus 300 ~d~f~yri~k~Ig~~~a~l~----gvDaiVFTgGIGen~~~vr~~i~~~l~ 346 (397)
T PRK12440 300 FEVFTYRVAKYIASYLAALD----SLDGIIFTGGIGENSLPIRREILKNLK 346 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhC----CCCEEEECCccccCcHHHHHHHHhhhh
Confidence 34455666666665554443 5999999999888776 9999987764
No 292
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=23.06 E-value=7.3e+02 Score=28.82 Aligned_cols=67 Identities=13% Similarity=0.178 Sum_probs=38.1
Q ss_pred HHHhhHHHHHHHHHHHHhhHhhccCCHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHhHhHHHH
Q 004211 582 DRKNALESYVYEMRDKISNIYRSFATESEREGISRNLRDTEEWLYEDGDDESENVYAERLEDLKKLVDPIEG 653 (768)
Q Consensus 582 ~akN~LEs~iy~~r~~l~~~~~~~~t~~e~~~l~~~l~~~~~WL~~~g~~a~~~~~~~kl~~L~~~~~pi~~ 653 (768)
..-++++.-+-..+......+.+.-+.++.+++.+.++++.. +.--+..++.+..++++.+..-+..
T Consensus 164 ~~~~~~~~~~k~~~~~w~~~~~~Lp~~~~~~~yk~~v~~i~~-----~~ik~p~~i~~~~~e~d~lk~e~~~ 230 (555)
T TIGR03545 164 ETAEEIEKSLKAMQQKWKKRKKDLPNKQDLEEYKKRLEAIKK-----KDIKNPLELQKIKEEFDKLKKEGKA 230 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHh-----ccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445555555444444467777777777777776 2233455666666666666555543
No 293
>PF04614 Pex19: Pex19 protein family; InterPro: IPR006708 Peroxisome(s) form an intracellular compartment, bounded by a typical lipid bilayer membrane. Peroxisome functions are often specialised by organism and cell type; two widely distributed and well-conserved functions are H2O2-based respiration and fatty acid beta-oxidation. Other functions include ether lipid (plasmalogen) synthesis and cholesterol synthesis in animals, the glyoxylate cycle in germinating seeds ("glyoxysomes"), photorespiration in leaves, glycolysis in trypanosomes ("glycosomes"), and methanol and/or amine oxidation and assimilation in some yeasts. PEX genes encode the machinery ("peroxins") required to assemble the peroxisome. Membrane assembly and maintenance requires three of these (peroxins 3, 16, and 19) and may occur without the import of the matrix (lumen) enzymes. Matrix protein import follows a branched pathway of soluble recycling receptors, with one branch for each class of peroxisome targeting sequence (two are well characterised), and a common trunk for all. At least one of these receptors, Pex5p, enters and exits peroxisomes as it functions. Proliferation of the organelle is regulated by Pex11p. Peroxisome biogenesis is remarkably conserved among eukaryotes. A group of fatal, inherited neuropathologies are recognised as peroxisome biogenesis diseases. ; GO: 0005777 peroxisome; PDB: 2WL8_B 2W85_B.
Probab=22.90 E-value=7.3e+02 Score=25.37 Aligned_cols=65 Identities=20% Similarity=0.296 Sum_probs=37.8
Q ss_pred hhHHHHHHHHHHHHhhHhhccCCHHH-HHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHhHhHHHHhhHh
Q 004211 585 NALESYVYEMRDKISNIYRSFATESE-REGISRNLRDTEEWLYEDGDDESENVYAERLEDLKKLVDPIEGRYKD 657 (768)
Q Consensus 585 N~LEs~iy~~r~~l~~~~~~~~t~~e-~~~l~~~l~~~~~WL~~~g~~a~~~~~~~kl~~L~~~~~pi~~R~~e 657 (768)
..++..+-.|-..| ++.+- .+-++...+++-.||..++...+.++|. |+..=..++..|...|+.
T Consensus 122 ~~~~~~l~~mm~qL-------~SKevLYePmKel~~kyP~wL~~n~~~l~~ed~~-rY~~Q~~~v~~I~~~fE~ 187 (248)
T PF04614_consen 122 EDFDKMLQGMMQQL-------LSKEVLYEPMKELRDKYPEWLEENKSKLSAEDYE-RYEKQYELVKEICAIFEK 187 (248)
T ss_dssp ---HHHHHHHHHHH-------TSHHHHHHHHHHHHHHHHHHHHHHCCCS-HHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHh-------ccHhhhhhhHHHHHHHhHHHHHhCcCcCCHHHHH-HHHHHHHHHHHHHHHHcC
Confidence 34555555544444 33332 3678889999999999998777777644 333334455556665554
No 294
>PF01150 GDA1_CD39: GDA1/CD39 (nucleoside phosphatase) family; InterPro: IPR000407 A number of nucleoside diphosphate and triphosphate hydrolases as well as some yet uncharacterised proteins have been found to belong to the same family [, ]. The uncharacterised proteins all seem to be membrane-bound. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0016787 hydrolase activity; PDB: 3AAP_A 3AAR_A 3AAQ_A 3AGR_A 4A5B_B 4A57_D 4A59_A 4A5A_B 3CJA_A 3CJ1_A ....
Probab=22.52 E-value=1e+02 Score=34.60 Aligned_cols=21 Identities=24% Similarity=0.314 Sum_probs=16.1
Q ss_pred CcEEEEEEeCCceEEEEEEEe
Q 004211 194 PTYVVFVDIGHCDTQVCVASY 214 (768)
Q Consensus 194 ~~~vlv~D~GggT~dvsv~~~ 214 (768)
...+.++||||+++.++..--
T Consensus 163 ~~t~g~lDlGGaStQIaf~~~ 183 (434)
T PF01150_consen 163 SNTVGALDLGGASTQIAFEPS 183 (434)
T ss_dssp SS-EEEEEE-SSEEEEEEEET
T ss_pred CceEEEEecCCcceeeeeccC
Confidence 578999999999999996544
No 295
>PF00815 Histidinol_dh: Histidinol dehydrogenase; InterPro: IPR012131 Histidinol dehydrogenase (HDH) catalyzes the terminal step in the biosynthesis of histidine in bacteria, fungi, and plants, the four-electron oxidation of L-histidinol to histidine. In 4-electron dehydrogenases, a single active site catalyses 2 separate oxidation steps: oxidation of the substrate alcohol to an intermediate aldehyde; and oxidation of the aldehyde to the product acid, in this case His []. The reaction proceeds via a tightly- or covalently-bound inter-mediate, and requires the presence of 2 NAD molecules []. By contrast with most dehydrogenases, the substrate is bound before the NAD coenzyme []. A Cys residue has been implicated in the catalytic mechanism of the second oxidative step []. In bacteria HDH is a single chain polypeptide; in fungi it is the C-terminal domain of a multifunctional enzyme which catalyzes three different steps of histidine biosynthesis; and in plants it is expressed as nuclear encoded protein precursor which is exported to the chloroplast [].; GO: 0004399 histidinol dehydrogenase activity, 0008270 zinc ion binding, 0051287 NAD binding, 0000105 histidine biosynthetic process, 0055114 oxidation-reduction process; PDB: 1KAE_B 1K75_A 1KAH_A 1KAR_B.
Probab=22.24 E-value=1.4e+02 Score=32.98 Aligned_cols=48 Identities=27% Similarity=0.317 Sum_probs=30.2
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHcCCCceeeccchHH-HHHHhhhc
Q 004211 138 ISNCVIGVPCYLTDVQRRAYLDAATIAGLKPLRLMHDCTA-TALGYGIY 185 (768)
Q Consensus 138 ~~~~VitVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~A-aal~y~~~ 185 (768)
+.++|++.|+.-+..---.++-||.++|.+.+.-+--.-| ||++||..
T Consensus 137 V~~Iv~~TPp~~~G~i~p~vL~Aa~~~Gv~evy~vGGaqAIAAlAyGTe 185 (412)
T PF00815_consen 137 VKEIVVCTPPPKDGKINPAVLAAAHLAGVDEVYKVGGAQAIAALAYGTE 185 (412)
T ss_dssp -SEEEEEE-SS------HHHHHHHHHTT-SEEEE--HHHHHHHHHH--S
T ss_pred CCeEEEEcCCCccCCCCHHHHHHHHHcCCCEEEecccHHHHHHHHcCCC
Confidence 5789999998876666678899999999999888888877 46799864
No 296
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=22.20 E-value=8.5e+02 Score=28.46 Aligned_cols=43 Identities=21% Similarity=0.268 Sum_probs=36.0
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccHHHHHHHHHHHHHHhhhhc
Q 004211 683 SLPSKVRDAVIDECSKAEEWLREKVTQQDSLPKDADPILWSTEIKRKSEALDLTCKCIM 741 (768)
Q Consensus 683 ~~~~~e~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~~~i~ 741 (768)
.++++++.++...+.+.+.||.. . ..+++.+.+.|+...+++.
T Consensus 531 ~~~~~~~~~~~~~~~~~~~~l~~--~--------------~~~~~~~~~~l~~~~~~~~ 573 (579)
T COG0443 531 KVSEEEKEKIEEAITDLEEALEG--E--------------KEEIKAKIEELQEVTQKLA 573 (579)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhc--c--------------HHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999999976 0 6788888888888877665
No 297
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=22.16 E-value=3.5e+02 Score=28.52 Aligned_cols=53 Identities=13% Similarity=0.059 Sum_probs=34.2
Q ss_pred CCCcEEEEEEeCCceEEEEEEEeeCCeEEEEEEeCCCCCchhhHHHHHHHHHH
Q 004211 192 VGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEVLSSYFA 244 (768)
Q Consensus 192 ~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~d~~l~~~l~ 244 (768)
....+++-+|+|+.++.++++......+..........-....+-..|.+.+.
T Consensus 3 ~~~~~~lgidIggt~i~~~l~d~~g~~l~~~~~~~~~~~~~~~~~~~i~~~i~ 55 (314)
T COG1940 3 PEAMTVLGIDIGGTKIKVALVDLDGEILLRERIPTPTPDPEEAILEAILALVA 55 (314)
T ss_pred ccCcEEEEEEecCCEEEEEEECCCCcEEEEEEEecCCCCchhHHHHHHHHHHH
Confidence 34578999999999999999988766544444432232333455555555444
No 298
>PF11458 Mistic: Membrane-integrating protein Mistic; InterPro: IPR021078 Mistic is an integral membrane protein that folds autonomously into the membrane []. It is conserved in the Bacilli bacteria. The protein forms a helical bundle with a polar lipid-facing surface. Mistic can be used for high-level production of other membrane proteins in their native conformations [].
Probab=22.05 E-value=2.1e+02 Score=22.97 Aligned_cols=20 Identities=30% Similarity=0.418 Sum_probs=15.9
Q ss_pred CCHHHHHHHHHHHHHHHHHH
Q 004211 606 ATESEREGISRNLRDTEEWL 625 (768)
Q Consensus 606 ~t~~e~~~l~~~l~~~~~WL 625 (768)
++..||+.+..+++...+-|
T Consensus 3 Vt~~EkeQLS~AID~mnEGL 22 (84)
T PF11458_consen 3 VTDQEKEQLSTAIDRMNEGL 22 (84)
T ss_pred CchHHHHHHHHHHHHHHhhH
Confidence 56788888888888887765
No 299
>PLN02914 hexokinase
Probab=21.96 E-value=2.2e+02 Score=32.35 Aligned_cols=24 Identities=13% Similarity=0.134 Sum_probs=21.6
Q ss_pred CCcEEEEEEeCCceEEEEEEEeeC
Q 004211 193 GPTYVVFVDIGHCDTQVCVASYEN 216 (768)
Q Consensus 193 ~~~~vlv~D~GggT~dvsv~~~~~ 216 (768)
+...+|.+|+||.++-|..|++.+
T Consensus 93 E~G~fLAlDlGGTNfRV~~V~L~g 116 (490)
T PLN02914 93 EKGLFYALDLGGTNFRVLRVQLGG 116 (490)
T ss_pred eeeEEEEEecCCceEEEEEEEecC
Confidence 456799999999999999999986
No 300
>PRK12408 glucokinase; Provisional
Probab=20.97 E-value=63 Score=34.81 Aligned_cols=19 Identities=26% Similarity=0.365 Sum_probs=17.2
Q ss_pred EEEEEcCccceEEEEEEcC
Q 004211 3 VVGFDIGNENCVIAAVKQG 21 (768)
Q Consensus 3 viGID~GTt~s~va~~~~g 21 (768)
++|||+|.|++++++++.+
T Consensus 18 ~L~~DIGGT~i~~al~d~~ 36 (336)
T PRK12408 18 FVAADVGGTHVRVALVCAS 36 (336)
T ss_pred EEEEEcChhhhheeEEecc
Confidence 7999999999999999753
No 301
>PRK12879 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=20.94 E-value=1.9e+02 Score=30.60 Aligned_cols=47 Identities=17% Similarity=0.102 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCcCEEEEecCCCChHHHHHHHHhhcCC
Q 004211 309 SSLLERMRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNR 358 (768)
Q Consensus 309 ~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~fg~ 358 (768)
...+..+...++++|+++|+++++|+.+++..++ +.+.+.+.+.+|.
T Consensus 221 ~~~~~~~~~~i~~~L~~~g~~~~did~~~~h~~~---~~~~~~~~~~lg~ 267 (325)
T PRK12879 221 KWAVRTMPKGARQVLEKAGLTKDDIDWVIPHQAN---LRIIESLCEKLGI 267 (325)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCCEEEECCCC---HHHHHHHHHHcCC
Confidence 3445667788999999999999999999999876 4445677888874
No 302
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=20.94 E-value=1.2e+03 Score=26.08 Aligned_cols=115 Identities=17% Similarity=0.142 Sum_probs=61.5
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHhhHhhccCCHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHh----H-hHH
Q 004211 577 MERTKDRKNALESYVYEMRDKISNIYRSFATESEREGISRNLRDTEEWLYEDGDDESENVYAERLEDLKKL----V-DPI 651 (768)
Q Consensus 577 ~~~~~~akN~LEs~iy~~r~~l~~~~~~~~t~~e~~~l~~~l~~~~~WL~~~g~~a~~~~~~~kl~~L~~~----~-~pi 651 (768)
.+.+.+.||+=|++...++..- ..|. ...+.-..++..+=.-+..||.-++.-..+++=.++|+.|+.- . .++
T Consensus 403 qk~LqEsr~eKetLqlelkK~k-~nyv-~LQEry~~eiQqKnksvsqclEmdk~LskKeeeverLQ~lkgelEkat~SAL 480 (527)
T PF15066_consen 403 QKHLQESRNEKETLQLELKKIK-ANYV-HLQERYMTEIQQKNKSVSQCLEMDKTLSKKEEEVERLQQLKGELEKATTSAL 480 (527)
T ss_pred HHHHHHHHhhHHHHHHHHHHHh-hhHH-HHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677777777777666422 1110 1112223445555555666777665445555556677766632 2 222
Q ss_pred HHhhHhHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHH
Q 004211 652 EGRYKDEEARAQATGALLKCAMDYRKVVEAHSLPSKVRDAVIDECSKA 699 (768)
Q Consensus 652 ~~R~~e~~~rp~a~~~l~~~l~~~~~~~~~~~~~~~e~~~v~~~~~~~ 699 (768)
-.-.+|.+.|.+-+-.|+.-+++..+.- .+|+++|...+.+.
T Consensus 481 dlLkrEKe~~EqefLslqeEfQk~eken------l~ERqkLKs~leKL 522 (527)
T PF15066_consen 481 DLLKREKETREQEFLSLQEEFQKHEKEN------LEERQKLKSRLEKL 522 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh------HHHHHHHHHHHHHH
Confidence 2333455666666666666666554433 45677777665443
No 303
>COG4020 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.69 E-value=1e+02 Score=31.21 Aligned_cols=53 Identities=21% Similarity=0.144 Sum_probs=35.1
Q ss_pred CCCcCEEEEecCCCChHH---HHHHHHhhcCCCCCCcCCchhHHHhhHHHHhhHhcCC
Q 004211 330 VEKIHSVELVGSGSRIPA---ISRMLNSLFNREPGRTINASECVARGCALQCAMLSPQ 384 (768)
Q Consensus 330 ~~~i~~V~LvGG~srip~---v~~~l~~~fg~~v~~~~n~~eava~GAa~~a~~ls~~ 384 (768)
....+.|+|.|.-+-+.. |++.|....-.++ ..-|-++.++|+|+.|.-.+..
T Consensus 266 ~~~~d~v~laGsvg~~~ep~dv~~ri~~~v~~k~--~~l~~esaaiG~a~IA~DI~~G 321 (332)
T COG4020 266 VYGCDGVVLAGSVGGDREPMDVLKRIKSKVFNKV--AVLPPESAAIGLALIARDIASG 321 (332)
T ss_pred ecCCceEEEecccccccchhhHHHHHHHHHHHHH--hhcCchhhhhhhHHHHHHHHcC
Confidence 446788999996665555 7777766553222 2234556899999999876654
No 304
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=20.63 E-value=2.2e+02 Score=30.56 Aligned_cols=45 Identities=22% Similarity=0.251 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEecCCCChHHHH
Q 004211 305 EKLSSSLLERMRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAIS 349 (768)
Q Consensus 305 e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~ 349 (768)
|...+..++.+..+|+++|+++|++..|||.|-.+=|-+-++.+.
T Consensus 44 e~Asr~H~e~i~~li~~al~eA~~~~~dID~IA~T~gPGL~gaL~ 88 (342)
T COG0533 44 ELASRHHVENIPPLIEEALAEAGVSLEDIDAIAVTAGPGLGGALL 88 (342)
T ss_pred cHHHHHHHHHHHHHHHHHHHHcCCCcccCCEEEEecCCCchhHHH
Confidence 345567888999999999999999999999999999999888776
No 305
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=20.33 E-value=2.7e+02 Score=29.68 Aligned_cols=67 Identities=21% Similarity=0.172 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEecCCCChHHHHHHH------HhhcCCCCCCcCCchhHHHhhH
Q 004211 307 LSSSLLERMRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRML------NSLFNREPGRTINASECVARGC 374 (768)
Q Consensus 307 ~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l------~~~fg~~v~~~~n~~eava~GA 374 (768)
..+...+.+...|+++|++++++..+|+.|.++-|-...+.++--+ ...++.++ ..++..++.|..|
T Consensus 45 ~~~~H~~~l~~~i~~~l~~~~~~~~~id~iav~~GPGsftglrig~~~Ak~la~~~~~p~-~~v~h~~aha~~a 117 (314)
T TIGR03723 45 ASRAHLEAIPPLIEEALAEAGLTLSDIDAIAVTAGPGLIGALLVGVSFAKALALALNKPL-IGVNHLEGHLLAP 117 (314)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCChHHhHHHHHHHHHHHHHHhCCCE-EecccHHHHHHhh
Confidence 3456677888899999999999999999999999999999887443 33334443 5556666665533
No 306
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=20.19 E-value=2.8e+02 Score=29.34 Aligned_cols=66 Identities=12% Similarity=0.007 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEecCCCChHHHHHH------HHhhcCCCCCCcCCchhHHHhh
Q 004211 307 LSSSLLERMRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRM------LNSLFNREPGRTINASECVARG 373 (768)
Q Consensus 307 ~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~------l~~~fg~~v~~~~n~~eava~G 373 (768)
..+...+.+...++++|+++++++.+|+.|.++.|-...+.++-- |...++.++ ..++..++-|.-
T Consensus 44 ~~~~H~~~l~~~i~~~l~~~~~~~~did~iav~~GPG~~tglrvg~~~Ak~la~~~~~p~-~~v~hl~~ha~~ 115 (305)
T TIGR00329 44 ASRHHAENIPPLLERALIESNVDKSEIDLIAYTQGPGLGGSLRVGATFARSLALSLDKPL-IGVNHLLGHIYA 115 (305)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCCchhhHHHHHHHHHHHHHHhCCCE-eecccHHHHHHH
Confidence 345567788889999999999999999999999999999988743 333445443 444556665543
No 307
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=20.14 E-value=1.2e+03 Score=25.84 Aligned_cols=24 Identities=17% Similarity=0.183 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHhhcCCCccHH
Q 004211 612 EGISRNLRDTEEWLYEDGDDESEN 635 (768)
Q Consensus 612 ~~l~~~l~~~~~WL~~~g~~a~~~ 635 (768)
.+=...|.+.-.|+|--|.+.+..
T Consensus 111 r~qr~~La~~L~A~~r~g~~p~~~ 134 (420)
T COG4942 111 REQRRRLAEQLAALQRSGRNPPPA 134 (420)
T ss_pred HHHHHHHHHHHHHHHhccCCCCch
Confidence 344567788889999877665443
Done!