Your job contains 1 sequence.
>004212
MLLTLRSCYPLRLTPLSGNVVKPTSFSRLSFSSHHLFQKPKPLSSSLNPRRKMSSSAPNA
FQVLMSAAAKKKPSPQPNSSSSSSSPKKRRTLDTQTPKTTNSVVGEKIQEVAEEPSNDLV
KPISNQIDNPIDSEKESQPTPPSPKKRKVNVNSVSAKEKIAELKSNIVLLKKKAGEFDPK
MVACWEKGERVPFIFLSLVFDMISNETGRILITDIVCNMLRTVMETTPEDLVPVVYLAAN
KIAPAHEGLELGIGDASIIKALAEACGRTESHVKKQYQEMGDLGLVAKASRSSQSMMRKP
DPLTITKVFDTFRLIAKEAGKDSQEKKKNRIKALLVAATDCEPQYLIRLLQSKLRIGLAE
QTLLAALGQAAVYNEQHSKPPPNIQSPLEEAAKIVKQVFSVLPVYEKIVPALLTDGVWNL
SNTCSFTPGIPIGPMLAKPTKGVSEIVNKFQDMEFTCEYKYDGERAQIHYLEDGSVEIYS
RNAERNTGKFPDVVLAVSRLKKPSVRSFVLDCEIVAYDREKQKILPFQTLSTRARKNVSL
SDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQ
KFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGR
GKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFAD
TISPDVWFEPTERPETSNSPASIVYDSQITCLPSSYMPFSRSYFRFGR
The BLAST search returned 4 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 004212
(768 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2199953 - symbol:LIG1 "DNA ligase 1" species:3... 2430 2.3e-252 1
UNIPROTKB|Q0IWT4 - symbol:Os10g0489200 "DNA ligase" speci... 2143 1.3e-224 2
TAIR|locus:2010207 - symbol:AT1G49250 species:3702 "Arabi... 1891 1.1e-198 2
DICTYBASE|DDB_G0274493 - symbol:lig1 "DNA ligase I" speci... 1487 3.9e-155 2
UNIPROTKB|B4DTU4 - symbol:LIG1 "DNA ligase" species:9606 ... 1432 7.4e-150 2
UNIPROTKB|P18858 - symbol:LIG1 "DNA ligase 1" species:960... 1432 3.2e-149 2
UNIPROTKB|F1M624 - symbol:Lig1 "DNA ligase" species:10116... 1411 3.4e-149 3
UNIPROTKB|F1M8E6 - symbol:Lig1 "DNA ligase" species:10116... 1411 3.4e-149 3
UNIPROTKB|F1RL99 - symbol:LIG1 "DNA ligase" species:9823 ... 1409 5.2e-149 2
MGI|MGI:101789 - symbol:Lig1 "ligase I, DNA, ATP-dependen... 1418 2.2e-148 2
UNIPROTKB|F6URE1 - symbol:LIG1 "DNA ligase" species:9615 ... 1411 1.6e-147 2
UNIPROTKB|F5GZ28 - symbol:LIG1 "DNA ligase" species:9606 ... 1437 3.9e-147 1
UNIPROTKB|A4IFC8 - symbol:LIG1 "DNA ligase" species:9913 ... 1418 8.6e-147 2
UNIPROTKB|A8JH25 - symbol:LIG1 "DNA ligase" species:3055 ... 1432 1.3e-146 1
RGD|621424 - symbol:Lig1 "ligase I, DNA, ATP-dependent" s... 1374 1.4e-144 2
UNIPROTKB|E2QTV4 - symbol:LIG1 "Uncharacterized protein" ... 1400 3.3e-143 1
UNIPROTKB|Q75CS4 - symbol:ACL155W "DNA ligase" species:28... 1392 2.3e-142 1
UNIPROTKB|G4N7T1 - symbol:MGG_06370 "DNA ligase" species:... 734 3.5e-141 3
ASPGD|ASPL0000001880 - symbol:AN6069 species:162425 "Emer... 730 4.4e-141 3
UNIPROTKB|Q5B061 - symbol:AN6069.2 "DNA ligase" species:2... 730 4.4e-141 3
UNIPROTKB|H9L3I6 - symbol:LIG1 "Uncharacterized protein" ... 1367 1.0e-139 1
FB|FBgn0262619 - symbol:DNA-ligI "DNA ligase I" species:7... 1364 2.1e-139 1
UNIPROTKB|Q2TB12 - symbol:LIG1 "DNA ligase" species:9606 ... 1313 1.2e-136 2
UNIPROTKB|Q7RYJ3 - symbol:NCU06481 "DNA ligase" species:3... 727 3.2e-136 2
POMBASE|SPAC20G8.01 - symbol:cdc17 "ATP-dependent DNA lig... 1331 6.7e-136 1
SGD|S000002323 - symbol:CDC9 "DNA ligase found in the nuc... 1307 2.3e-133 1
UNIPROTKB|H9L029 - symbol:LIG1 "Uncharacterized protein" ... 1301 1.0e-132 1
CGD|CAL0006047 - symbol:orf19.6155 species:5476 "Candida ... 1237 4.3e-128 2
WB|WBGene00002985 - symbol:lig-1 species:6239 "Caenorhabd... 1256 5.9e-128 1
UNIPROTKB|Q27474 - symbol:lig-1 "DNA ligase 1" species:62... 1256 5.9e-128 1
UNIPROTKB|Q7RPC6 - symbol:PY01533 "DNA ligase" species:73... 911 5.7e-124 2
GENEDB_PFALCIPARUM|MAL13P1.22 - symbol:MAL13P1.22 "DNA li... 903 9.4e-122 2
UNIPROTKB|Q8IES4 - symbol:PfLigI "DNA ligase" species:363... 903 9.4e-122 2
POMBASE|SPBC713.06 - symbol:adl1 "DNA ligase (predicted)"... 958 2.2e-96 1
UNIPROTKB|G4NHG0 - symbol:MGG_03854 "DNA ligase" species:... 734 1.0e-90 2
ASPGD|ASPL0000077573 - symbol:AN4883 species:162425 "Emer... 734 1.7e-90 2
UNIPROTKB|Q5B3J7 - symbol:AN4883.2 "DNA ligase" species:2... 734 1.7e-90 2
UNIPROTKB|Q7S2S0 - symbol:NCU09706 "DNA ligase" species:3... 488 4.3e-71 3
UNIPROTKB|O67398 - symbol:lig "Probable DNA ligase" speci... 426 1.2e-62 2
UNIPROTKB|A8J921 - symbol:CHLREDRAFT_176829 "Predicted pr... 367 2.4e-58 3
UNIPROTKB|Q980T8 - symbol:lig "DNA ligase" species:273057... 594 8.4e-58 1
UNIPROTKB|Q8TSR7 - symbol:lig1 "DNA ligase 1" species:188... 564 1.3e-54 1
UNIPROTKB|Q24FD9 - symbol:TTHERM_00865240 "DNA ligase" sp... 564 1.3e-54 1
UNIPROTKB|Q8TMT1 - symbol:lig2 "DNA ligase 2" species:188... 322 2.7e-40 2
UNIPROTKB|Q0JKB6 - symbol:Os01g0685500 "Os01g0685500 prot... 370 3.2e-33 1
UNIPROTKB|E2RNT6 - symbol:LIG3 "DNA ligase" species:9615 ... 359 1.4e-30 2
UNIPROTKB|J9P597 - symbol:LIG3 "DNA ligase" species:9615 ... 359 1.5e-30 2
UNIPROTKB|F1MQY1 - symbol:LIG3 "DNA ligase" species:9913 ... 359 2.2e-30 3
UNIPROTKB|P49916 - symbol:LIG3 "DNA ligase 3" species:960... 356 3.2e-30 2
DICTYBASE|DDB_G0283857 - symbol:lig3 "DNA ligase III" spe... 358 4.3e-29 1
ZFIN|ZDB-GENE-030131-8453 - symbol:lig3 "ligase III, DNA,... 352 7.1e-28 3
UNIPROTKB|F1P275 - symbol:LIG4 "DNA ligase" species:9031 ... 312 1.1e-27 2
UNIPROTKB|Q90YB1 - symbol:LIG4 "DNA ligase 4" species:903... 310 1.8e-27 2
RGD|1309875 - symbol:Lig3 "ligase III, DNA, ATP-dependent... 351 2.9e-27 2
UNIPROTKB|D4A2K2 - symbol:Lig3 "DNA ligase" species:10116... 351 3.0e-27 2
UNIPROTKB|D4A837 - symbol:Lig3 "DNA ligase" species:10116... 351 3.8e-27 2
MGI|MGI:109152 - symbol:Lig3 "ligase III, DNA, ATP-depend... 350 4.9e-27 2
FB|FBgn0038035 - symbol:lig3 "DNA ligase III" species:722... 336 6.3e-27 2
UNIPROTKB|F1P394 - symbol:LIG3 "DNA ligase" species:9031 ... 327 2.4e-26 2
UNIPROTKB|E2R0G7 - symbol:LIG4 "DNA ligase" species:9615 ... 297 7.9e-26 2
ZFIN|ZDB-GENE-070820-10 - symbol:lig4 "ligase IV, DNA, AT... 302 1.2e-25 2
RGD|1304639 - symbol:Lig4 "ligase IV, DNA, ATP-dependent"... 285 3.1e-25 2
UNIPROTKB|F1MB07 - symbol:LIG4 "DNA ligase" species:9913 ... 287 1.3e-24 2
UNIPROTKB|Q5R6L3 - symbol:DNL4 "DNA ligase 4" species:960... 280 1.8e-24 2
MGI|MGI:1335098 - symbol:Lig4 "ligase IV, DNA, ATP-depend... 271 5.2e-24 2
UNIPROTKB|F1RLP1 - symbol:LIG4 "DNA ligase" species:9823 ... 279 5.9e-24 2
UNIPROTKB|P49917 - symbol:LIG4 "DNA ligase 4" species:960... 279 5.9e-24 2
UNIPROTKB|P95096 - symbol:lig "Probable DNA ligase" speci... 250 8.4e-24 2
UNIPROTKB|Q9FCB1 - symbol:lig "Probable DNA ligase" speci... 255 5.2e-21 2
SGD|S000005531 - symbol:DNL4 "DNA ligase required for non... 283 8.6e-21 2
DICTYBASE|DDB_G0292760 - symbol:lig4 "BRCT domain-contain... 247 2.2e-19 2
POMBASE|SPCC1183.05c - symbol:lig4 "DNA ligase Lig4" spec... 266 2.9e-19 1
UNIPROTKB|Q75CA4 - symbol:LIG4 "DNA ligase 4" species:284... 257 2.0e-18 2
UNIPROTKB|Q23RI5 - symbol:TTHERM_00387050 "DNA ligase" sp... 232 6.3e-18 2
UNIPROTKB|Q7SB49 - symbol:lig-4 "DNA ligase 4" species:36... 251 2.9e-17 2
FB|FBgn0030506 - symbol:Lig4 "Ligase4" species:7227 "Dros... 244 7.3e-17 1
ASPGD|ASPL0000057134 - symbol:AN0097 species:162425 "Emer... 253 1.1e-16 2
UNIPROTKB|Q5BH83 - symbol:lig4 "DNA ligase 4" species:227... 253 1.1e-16 2
UNIPROTKB|B4E135 - symbol:LIG1 "DNA ligase 1" species:960... 230 4.1e-16 1
CGD|CAL0001558 - symbol:LIG4 species:5476 "Candida albica... 239 5.7e-15 2
UNIPROTKB|P52496 - symbol:LIG4 "DNA ligase 4" species:237... 239 5.7e-15 2
UNIPROTKB|I3L9T2 - symbol:I3L9T2 "Uncharacterized protein... 210 5.8e-14 1
TAIR|locus:2175544 - symbol:ATLIG4 species:3702 "Arabidop... 207 2.9e-13 2
UNIPROTKB|Q89BW7 - symbol:blr8031 "Blr8031 protein" speci... 192 2.6e-12 1
WB|WBGene00002986 - symbol:lig-4 species:6239 "Caenorhabd... 194 1.4e-11 1
UNIPROTKB|Q95YE6 - symbol:lig-4 "Protein LIG-4" species:6... 194 1.4e-11 1
UNIPROTKB|Q9KXZ8 - symbol:Q9KXZ8 "Probable ATP-dependent ... 184 2.6e-11 1
UNIPROTKB|A6V648 - symbol:ligD "DNA ligase D" species:381... 174 2.4e-09 1
UNIPROTKB|Q0C1L5 - symbol:HNE_1670 "Putative DNA ligase, ... 171 5.7e-09 2
UNIPROTKB|Q89VA3 - symbol:bll1144 "Bll1144 protein" speci... 152 7.9e-08 2
UNIPROTKB|Q89JT7 - symbol:blr5182 "Blr5182 protein" speci... 134 2.2e-06 1
TIGR_CMR|CBU_1934 - symbol:CBU_1934 "DNA ligase, ATP-depe... 127 0.00028 1
UNIPROTKB|A8JIN2 - symbol:DNL4 "DNA ligase IV" species:30... 127 0.00040 2
UNIPROTKB|Q89FC8 - symbol:bll6773 "Bll6773 protein" speci... 125 0.00051 1
UNIPROTKB|Q89CU1 - symbol:bll7704 "Bll7704 protein" speci... 112 0.00075 1
>TAIR|locus:2199953 [details] [associations]
symbol:LIG1 "DNA ligase 1" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003909 "DNA
ligase activity" evidence=IEA] [GO:0003910 "DNA ligase (ATP)
activity" evidence=IEA;ISS;IBA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0006266 "DNA ligation" evidence=IBA] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0000012 "single strand break
repair" evidence=IMP] [GO:0006260 "DNA replication" evidence=IMP]
[GO:0006302 "double-strand break repair" evidence=IMP] [GO:0006261
"DNA-dependent DNA replication" evidence=RCA] [GO:0009909
"regulation of flower development" evidence=RCA] [GO:0016458 "gene
silencing" evidence=RCA] [GO:0016570 "histone modification"
evidence=RCA] [GO:0034968 "histone lysine methylation"
evidence=RCA] [GO:0048449 "floral organ formation" evidence=RCA]
InterPro:IPR000977 InterPro:IPR012308 InterPro:IPR012309
InterPro:IPR012310 InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005739 GO:GO:0005524
GO:GO:0005634 GO:GO:0051301 GO:GO:0046872 GO:GO:0003677
GO:GO:0006260 GO:GO:0007049 GO:GO:0006310 GO:GO:0006302
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0000012
EMBL:AC011438 EMBL:AC026875 EMBL:X97924 EMBL:AK117238 EMBL:BT005964
EMBL:AK222166 IPI:IPI00535474 PIR:S71278 RefSeq:NP_172293.2
UniGene:At.36 ProteinModelPortal:Q42572 SMR:Q42572 STRING:Q42572
PaxDb:Q42572 PRIDE:Q42572 EnsemblPlants:AT1G08130.1 GeneID:837333
KEGG:ath:AT1G08130 TAIR:At1g08130 eggNOG:COG1793
HOGENOM:HOG000036006 InParanoid:Q42572 KO:K10747 OMA:AQVACLY
PhylomeDB:Q42572 ProtClustDB:PLN03113 Genevestigator:Q42572
GermOnline:AT1G08130 GO:GO:0003910 GO:GO:0051103
Gene3D:1.10.3260.10 SUPFAM:SSF117018 TIGRFAMs:TIGR00574
Uniprot:Q42572
Length = 790
Score = 2430 (860.5 bits), Expect = 2.3e-252, P = 2.3e-252
Identities = 467/682 (68%), Positives = 562/682 (82%)
Query: 51 RKMSSSAPNAFQVLMXXXXXXXXXXXXXXXXXXXXXXXRRTLDTQTPKTTNSVVGEKIQE 110
R MSSS P+AF LM R+ +TQ ++V E
Sbjct: 46 RAMSSSRPSAFDALMSNARAAAKKKTPQTTNLSRSPNKRKIGETQDANLGKTIVSEGTLP 105
Query: 111 VAEEPSNDLVKPISNQIDNPIDSEKESQPTPPSPKKRKVNVNSVSAKEKIAELKSNIVLL 170
E DL++P+S+ + D+ ++ + KK K ++S K E+KS I LL
Sbjct: 106 KTE----DLLEPVSDSANPRSDTSSIAEDSKTGAKKAK----TLS---KTDEMKSKIGLL 154
Query: 171 KKKAGEFDPKMVACWEKGERVPFIFLSLVFDMISNETGRILITDIVCNMLRTVMETTPED 230
KKK +FDP+ ++CWEKGERVPF+F++L FD+ISNE+GRI+ITDI+CNMLRTV+ TTPED
Sbjct: 155 KKKPNDFDPEKMSCWEKGERVPFLFVALAFDLISNESGRIVITDILCNMLRTVIATTPED 214
Query: 231 LVPVVYLAANKIAPAHEGLELGIGDASIIKALAEACGRTESHVKKQYQEMGDLGLVAKAS 290
LV VYL+AN+IAPAHEG+ELGIG+++IIKA++EA GRTE HVKKQ E+GDLGLVAK S
Sbjct: 215 LVATVYLSANEIAPAHEGVELGIGESTIIKAISEAFGRTEDHVKKQNTELGDLGLVAKGS 274
Query: 291 RSSQSMMRKPDPLTITKVFDTFRLIAKEAGKDSQEKKKNRIKALLVAATDCEPQYLIRLL 350
RS+Q+MM KP+PLT+ KVFDTFR IAKE+GKDS EKKKNR+KALLVA TDCEP YL RLL
Sbjct: 275 RSTQTMMFKPEPLTVVKVFDTFRQIAKESGKDSNEKKKNRMKALLVATTDCEPLYLTRLL 334
Query: 351 QSKLRIGLAEQTLLAALGQAAVYNEQHSKPPPNIQSPLEEAAKIVKQVFSVLPVYEKIVP 410
Q+KLR+G + QT+LAALGQAAVYNE+HSKPPPN +SPLEEAAKIVKQVF+VLPVY+ IVP
Sbjct: 335 QAKLRLGFSGQTVLAALGQAAVYNEEHSKPPPNTKSPLEEAAKIVKQVFTVLPVYDIIVP 394
Query: 411 ALLTDGVWNLSNTCSFTPGIPIGPMLAKPTKGVSEIVNKFQDMEFTCEYKYDGERAQIHY 470
ALL+ GVWNL TC+FT G+PIGPMLAKPTKGV+EI+NKFQD+ FTCEYKYDGERAQIH+
Sbjct: 395 ALLSGGVWNLPKTCNFTLGVPIGPMLAKPTKGVAEILNKFQDIVFTCEYKYDGERAQIHF 454
Query: 471 LEDGSVEIYSRNAERNTGKFPDVVLAVSRLKKPSVRSFVLDCEIVAYDREKQKILPFQTL 530
+EDG+ EIYSRNAERNTGK+PDV LA+SRLKKPSV+SF+LDCE+VA+DREK+KILPFQ L
Sbjct: 455 MEDGTFEIYSRNAERNTGKYPDVALALSRLKKPSVKSFILDCEVVAFDREKKKILPFQIL 514
Query: 531 STRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFFQFATT 590
STRARKNV+++DIKV VCI+AFD+LY NGQ L+QE L++RRE LY+SFEE+PG+FQFAT
Sbjct: 515 STRARKNVNVNDIKVGVCIFAFDMLYLNGQQLIQENLKIRREKLYESFEEDPGYFQFATA 574
Query: 591 LTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLD 650
+TS D+DEIQKFLDA+VD CEGLIIKT+D DATYEP+KRS NWLKLKKDY++SIGDS+D
Sbjct: 575 VTSNDIDEIQKFLDASVDVGCEGLIIKTLDSDATYEPAKRSNNWLKLKKDYMDSIGDSVD 634
Query: 651 LVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIP 710
LVPIAAFHGRGKRTGVYGAFLLACYD + EEFQSICKIGTGFS+AML+ERSSSLRS+VI
Sbjct: 635 LVPIAAFHGRGKRTGVYGAFLLACYDVDKEEFQSICKIGTGFSDAMLDERSSSLRSQVIA 694
Query: 711 KPRPYYRFADTISPDVWFEPTE 732
P+ YYR D+++PDVWFEPTE
Sbjct: 695 TPKQYYRVGDSLNPDVWFEPTE 716
>UNIPROTKB|Q0IWT4 [details] [associations]
symbol:Os10g0489200 "DNA ligase" species:39947 "Oryza
sativa Japonica Group" [GO:0003910 "DNA ligase (ATP) activity"
evidence=IBA] [GO:0005634 "nucleus" evidence=IBA] [GO:0005694
"chromosome" evidence=IBA] [GO:0005739 "mitochondrion"
evidence=IBA] [GO:0006266 "DNA ligation" evidence=IBA] [GO:0006273
"lagging strand elongation" evidence=IBA] [GO:0006289
"nucleotide-excision repair" evidence=IBA] InterPro:IPR000977
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679
PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005739
GO:GO:0005524 GO:GO:0005634 GO:GO:0005694 GO:GO:0003677
GO:GO:0006310 EMBL:AP008216 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0006289 GO:GO:0006273 KO:K10747 GO:GO:0003910
GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 RefSeq:NP_001064917.1 UniGene:Os.50787
STRING:Q0IWT4 PRIDE:Q0IWT4 GeneID:4348965 KEGG:osa:4348965
Gramene:Q0IWT4 ProtClustDB:CLSN2919973 Uniprot:Q0IWT4
Length = 828
Score = 2143 (759.4 bits), Expect = 1.3e-224, Sum P(2) = 1.3e-224
Identities = 417/586 (71%), Positives = 489/586 (83%)
Query: 133 SEKESQPTPPSPKKRKVNVNSVSAKEKIAELKSNIVLLKKKAGEFDPKMVACWEKGERVP 192
SE + P SPKK K +++ ++EK L+ LKKK EF+P A W E VP
Sbjct: 249 SESQDIKKPSSPKKTKA-LDAPKSEEKDTTLE-----LKKKGSEFNPMAAAYWSPEEPVP 302
Query: 193 FIFLSLVFDMISNETGRILITDIVCNMLRTVMETTPEDLVPVVYLAANKIAPAHEGLELG 252
F+FL+ D+ISNE+GRI+IT+I+ N+ RTV+ TTPEDL+ VYL+AN+IAP HEG ELG
Sbjct: 303 FLFLARALDLISNESGRIVITEILSNVFRTVIATTPEDLLATVYLSANRIAPPHEGTELG 362
Query: 253 IGDASIIKALAEACGRTESHVKKQYQEMGDLGLVAKASRSSQSMMRKPDPLTITKVFDTF 312
IGDASII+ALAEA GR E HVKK +E+GDLGLVAKASR SQ MM KP PLTI+ V F
Sbjct: 363 IGDASIIRALAEAYGRREEHVKKNLKELGDLGLVAKASRLSQKMMYKPKPLTISHVLAKF 422
Query: 313 RLIAKEAGKDSQEKKKNRIKALLVAATDCEPQYLIRLLQSKLRIGLAEQTLLAALGQAAV 372
R IAKE+GKDSQ+KK+N IK LLVAATDCEPQY+ RLLQSK+RIGLAE+T+ ALGQAAV
Sbjct: 423 RTIAKESGKDSQDKKRNHIKGLLVAATDCEPQYITRLLQSKMRIGLAEKTVQMALGQAAV 482
Query: 373 YNEQHSKPPPNIQSPLEEAAKIVKQVFSVLPVYEKIVPALLTDGVWNLSNTCSFTPGIPI 432
Y+E+HS PP IQSP EEAAKI+KQV+SVLP+Y+KIVPA+L GVW L CSF+ G+P+
Sbjct: 483 YSEKHS-PPSKIQSPFEEAAKIIKQVYSVLPIYDKIVPAILEVGVWKLPEICSFSIGVPV 541
Query: 433 GPMLAKPTKGVSEIVNKFQDMEFTCEYKYDGERAQIHYLEDGSVEIYSRNAERNTGKFPD 492
GPMLAK TK VSEI++KFQ +E+TCEYKYDGERAQIH LEDGSVEIYSRNAERNTGK+PD
Sbjct: 542 GPMLAKATKSVSEIIDKFQGLEYTCEYKYDGERAQIHCLEDGSVEIYSRNAERNTGKYPD 601
Query: 493 VVLAVSRLKKPSVRSFVLDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIKVDVCIYAF 552
VV AVSR +KP+V+SFVLDCEIVAYDREK+KILPFQ LSTRARK V++SDIKV VC + F
Sbjct: 602 VVDAVSRFRKPTVKSFVLDCEIVAYDREKKKILPFQILSTRARKGVTISDIKVSVCTFGF 661
Query: 553 DILYRNGQPLLQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCE 612
DILY NG+PLLQEQL+VRREHLY+SFEE PG FQ AT++TS DL+EIQKFLD AV++SCE
Sbjct: 662 DILYINGKPLLQEQLKVRREHLYNSFEEVPGVFQLATSITSNDLEEIQKFLDTAVNSSCE 721
Query: 613 GLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLL 672
GLIIKT+D+DATYEP+KRS NWLKLKKDY++SIGDSLDLVPIAAFHGRGKRTGVYG+FLL
Sbjct: 722 GLIIKTLDKDATYEPAKRSNNWLKLKKDYMDSIGDSLDLVPIAAFHGRGKRTGVYGSFLL 781
Query: 673 ACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRF 718
ACYD NEE+Q+IC IGTGFSE LEERS SLR+K IPKP+ + F
Sbjct: 782 ACYDEQNEEYQTICNIGTGFSEQQLEERSVSLRTKAIPKPKLCFHF 827
Score = 48 (22.0 bits), Expect = 1.3e-224, Sum P(2) = 1.3e-224
Identities = 16/51 (31%), Positives = 26/51 (50%)
Query: 107 KIQEVAEEPSNDLVKPISNQIDNPIDSEK-ESQPTPPSPKKRKVNVNSVSA 156
K + +A E S D+ KP S + +D+ K E + T KK+ N ++A
Sbjct: 243 KAKALASE-SQDIKKPSSPKKTKALDAPKSEEKDTTLELKKKGSEFNPMAA 292
Score = 37 (18.1 bits), Expect = 1.9e-223, Sum P(2) = 1.9e-223
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 134 EKESQPTPPSPKKRKVNVNSVSAKEKIAELK 164
E + +P+P PK ++ S+ E + + K
Sbjct: 205 EAKEKPSPKKPKTLGAKSDTKSSAEGVEKEK 235
>TAIR|locus:2010207 [details] [associations]
symbol:AT1G49250 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003909 "DNA ligase
activity" evidence=IEA] [GO:0003910 "DNA ligase (ATP) activity"
evidence=IEA;ISS;IBA] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM;IBA] [GO:0005739 "mitochondrion"
evidence=IBA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006266 "DNA ligation" evidence=IBA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0051103 "DNA ligation involved in DNA repair" evidence=IEA]
InterPro:IPR000977 InterPro:IPR012308 InterPro:IPR012309
InterPro:IPR012310 InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160
EMBL:CP002684 GO:GO:0005739 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0006260 GO:GO:0006310 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 KO:K10747 GO:GO:0003910
GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 OMA:PAFENTT IPI:IPI00521723 RefSeq:NP_175351.1
UniGene:At.52091 ProteinModelPortal:F4I1P7 SMR:F4I1P7 PRIDE:F4I1P7
EnsemblPlants:AT1G49250.1 GeneID:841349 KEGG:ath:AT1G49250
PhylomeDB:F4I1P7 Uniprot:F4I1P7
Length = 657
Score = 1891 (670.7 bits), Expect = 1.1e-198, Sum P(2) = 1.1e-198
Identities = 358/528 (67%), Positives = 445/528 (84%)
Query: 206 ETGRILITDIVCNMLRTVMETTPEDLVPVVYLAANKIAPAHEGLELGIGDAS-IIKALAE 264
E+GRI+IT I+CNMLRTV+ TTP+DL+P VYLAAN+IAPAHEG++LG+G S IIKA++E
Sbjct: 58 ESGRIVITHILCNMLRTVIATTPDDLLPTVYLAANEIAPAHEGIKLGMGKGSYIIKAISE 117
Query: 265 ACGRTESHVKKQYQEMGDLGLVAKASRSSQSMMRKPDPLTITKVFDTFRLIAKEAGKDSQ 324
A GRTESHV++QY ++GDLGLVA SRSSQ+M+ P PLT+ KV DT RLIAKE+GK S+
Sbjct: 118 AFGRTESHVEQQYTQLGDLGLVANGSRSSQTMIFMPKPLTVVKVADTLRLIAKESGKGSK 177
Query: 325 EKKKNRIKALLVAATDCEPQYLIRLLQSKLRIGLAEQTLLAALGQAAVYNEQHSKPPPNI 384
+KKK+ +KALLVA TDCEP YL RLLQ LR+G + QT+LAALGQAAVYNE+HSKPPPNI
Sbjct: 178 DKKKDLMKALLVATTDCEPLYLTRLLQDNLRLGFSRQTVLAALGQAAVYNEEHSKPPPNI 237
Query: 385 QSPLEEAAKIVKQVFSVLPVYEKIVPALLTDGVWNLSNTCSFTPGIPIGPMLAKPTKGVS 444
++PL+EAA IVK+VFS+LPVY+ IV ALLT GVWNL TC+ T G+P+ PMLAK T V
Sbjct: 238 KNPLDEAATIVKEVFSMLPVYDIIVGALLTSGVWNLPKTCNLTLGVPVRPMLAKATTRVD 297
Query: 445 EIVNKFQDMEFTCEYKYDGERAQIHYLEDGSVEIYSRNAERNTGKFPDVVLAVSRLKKPS 504
I+ KF+D FT EYKYDGERAQI+Y+EDG+VEI+SR+AERNTGK+PDV L +SRLKKP+
Sbjct: 298 LILEKFKDTVFTAEYKYDGERAQIYYMEDGTVEIFSRHAERNTGKYPDVALVLSRLKKPT 357
Query: 505 VRSFVLDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQ 564
V+SF+LDCE+V ++REK+KILP Q STRA KNV++SDIKV VC++AFDILY NGQ L+
Sbjct: 358 VKSFILDCEVVTFNREKEKILPLQ--STRAHKNVNVSDIKVGVCVFAFDILYLNGQLLIH 415
Query: 565 EQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDAT 624
E L +RRE L+DSFEE+ G+FQFAT LTS D+ E+Q+FL A++D CEGL+IK++ +AT
Sbjct: 416 ENLNIRREKLHDSFEEDLGYFQFATALTSNDIGELQEFLKASIDIGCEGLMIKSLYSNAT 475
Query: 625 YEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQS 684
YEP+KRS NWLKLKKDY+++IGDS+DLVPIA FHGRGKRTG +GA+LLACYD + EEFQS
Sbjct: 476 YEPAKRSNNWLKLKKDYMDNIGDSVDLVPIATFHGRGKRTGFFGAYLLACYDVDKEEFQS 535
Query: 685 ICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTE 732
ICKIGT FS+ L++ SSSL SKVI P+ YY+ + ++PDVW EPTE
Sbjct: 536 ICKIGTEFSDVELQDLSSSLCSKVIATPKQYYQVDNDLNPDVWLEPTE 583
Score = 55 (24.4 bits), Expect = 1.1e-198, Sum P(2) = 1.1e-198
Identities = 18/46 (39%), Positives = 26/46 (56%)
Query: 135 KESQPTPPSPKKRKVNV---NSVSAK-EKIAELKSNIVLLKKKAGE 176
+E+ TPP+ K V +S K +++ +LKS I LLKKK E
Sbjct: 13 EETVDTPPTRVDDKTLVLISDSKKPKSDRVTKLKSKIGLLKKKPTE 58
>DICTYBASE|DDB_G0274493 [details] [associations]
symbol:lig1 "DNA ligase I" species:44689
"Dictyostelium discoideum" [GO:0051103 "DNA ligation involved in
DNA repair" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003910 "DNA ligase (ATP) activity"
evidence=IEA;IBA] [GO:0003909 "DNA ligase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IBA] [GO:0006273 "lagging
strand elongation" evidence=IBA] [GO:0006266 "DNA ligation"
evidence=IBA] [GO:0005739 "mitochondrion" evidence=IBA] [GO:0005694
"chromosome" evidence=IBA] [GO:0005634 "nucleus" evidence=IEA;IBA]
[GO:0051301 "cell division" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0016874 "ligase activity" evidence=IEA]
[GO:0007049 "cell cycle" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 dictyBase:DDB_G0274493
GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694
GO:GO:0051301 GO:GO:0046872 GO:GO:0003677 GenomeReviews:CM000151_GR
EMBL:AAFI02000012 GO:GO:0007049 GO:GO:0006310 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006289 GO:GO:0006273
eggNOG:COG1793 KO:K10747 GO:GO:0003910 GO:GO:0051103
Gene3D:1.10.3260.10 SUPFAM:SSF117018 TIGRFAMs:TIGR00574
RefSeq:XP_644124.1 HSSP:P18858 ProteinModelPortal:Q869E1
STRING:Q869E1 EnsemblProtists:DDB0232265 GeneID:8619554
KEGG:ddi:DDB_G0274493 OMA:SERYSIM Uniprot:Q869E1
Length = 1192
Score = 1487 (528.5 bits), Expect = 3.9e-155, Sum P(2) = 3.9e-155
Identities = 299/639 (46%), Positives = 430/639 (67%)
Query: 106 EKIQEVAEEPSNDLVKPISNQIDNPIDSEKESQPTPPSPKKRKVNVNSVSAKEKIAELKS 165
EK++++ EE + + D SE E + S + + + V +K K+
Sbjct: 483 EKLEDIDEEEYEE-----EEEEDEEGISENEEEEEKKSTQIKSKFIKKVPISKKKGNAKT 537
Query: 166 NIVLLKKKAGEFDPKMVACWEKGERVPFIFLSLVFDMISNETGRILITDIVCNMLRTVME 225
I K G++ P A W+KGE VP++ L+ F+M+ + + R++I + + N+ R++M
Sbjct: 538 -IQADLKVIGKYRPIEDAQWKKGEAVPYMVLAKTFEMMESTSSRLIIIEHLANLFRSIML 596
Query: 226 TTPEDLVPVVYLAANKIAPAHEGLELGIGDASIIKALAEACGRTESHVKKQYQEMGDLGL 285
+P+DLV +YL+ NKI P+++ ELGIG+ +IK+LAE+ GR+ +K++ E+GDLG+
Sbjct: 597 LSPKDLVMTIYLSINKIGPSYQSKELGIGEHVLIKSLAESTGRSVDVIKQELTEVGDLGI 656
Query: 286 VAKASRSSQSMMRKPDPLTITKVFDTFRLIAKEAGKDSQEKKKNRIKALLVAATDCEPQY 345
+A+ SRS+Q++M KP PLTI VF TF+ IA +G Q+KKK+ IK LLV+ DCE Y
Sbjct: 657 IAQNSRSTQTLMGKPTPLTIQSVFKTFQQIADLSGTGGQQKKKDLIKKLLVSCKDCETLY 716
Query: 346 LIRLLQSKLRIGLAEQTLLAALGQAAVYNEQHSKPPPNI--------QSPLEEAAK-IVK 396
+IR LQ KLRIGLAE+++L AL ++ + I Q EE + +V
Sbjct: 717 IIRSLQGKLRIGLAERSVLMALAKSVLVTPPIDGSGQQIFDIRKQMKQEEFEERYQNVVS 776
Query: 397 QV---FSVLPVYEKIVPALLT-DGVWNLSNTCSFTPGIPIGPMLAKPTKGVSEIVNKFQD 452
+V +S LP Y+ VP L+ +G+ N+ +TCS GIP+ PMLA+PT G+S+++++F D
Sbjct: 777 KVTRAYSQLPNYDLFVPHLIAVNGIDNILSTCSLKVGIPVKPMLAQPTTGISQMLDRFSD 836
Query: 453 MEFTCEYKYDGERAQIHYLEDGSVEIYSRNAERNTGKFPDVVLAVSRLKKPSVRSFVLDC 512
MEFTCE+KYDGERAQIH L DG+ IY+RN E T K+PD+V V++ P+V+SF+LDC
Sbjct: 837 MEFTCEFKYDGERAQIHRLPDGTTHIYTRNLEDYTQKYPDIVANVTKFVGPNVKSFILDC 896
Query: 513 EIVAYDREKQKILPFQTLSTRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRRE 572
E VA+D +KIL FQ LSTRARK+V LS IKV VC++AFD+LY NGQ L+ E L RRE
Sbjct: 897 EAVAFDAATKKILSFQVLSTRARKSVQLSQIKVPVCVFAFDLLYLNGQSLIDEPLIKRRE 956
Query: 573 HLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSL 632
HL ++F G F FA D+++IQ +L+ AV+ +CEGL++KT+ + YEPS+RS
Sbjct: 957 HLVENFIASDGVFAFAKYSNISDVNDIQSYLEEAVEGNCEGLMVKTLKEKSIYEPSRRSY 1016
Query: 633 NWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGF 692
NWLK+KKDY++ + DSLDLVPI A++G+GKRTG YGA+LLACYD NNEEFQ++CKIGTGF
Sbjct: 1017 NWLKIKKDYMQGMTDSLDLVPIGAWYGKGKRTGTYGAYLLACYDENNEEFQTLCKIGTGF 1076
Query: 693 SEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPT 731
S+ L +S L+ +I +PR +RF+D+I PDVWF P+
Sbjct: 1077 SDEQLTTFTSQLKPHLINQPRNQFRFSDSIKPDVWFSPS 1115
Score = 47 (21.6 bits), Expect = 3.9e-155, Sum P(2) = 3.9e-155
Identities = 18/62 (29%), Positives = 27/62 (43%)
Query: 105 GEKIQEVAEEPSNDLVKPISNQIDNPIDSEKESQPTPPSPKKRKVNVNSVSAKEKIAELK 164
GE+ QE EE +I+ I+ E+E + +K K S+ KE E K
Sbjct: 81 GEEEQEEEEEYQQQ-----DEEIEEDINGEEEMELDENEKEKNKKKKQSLKTKEN-KESK 134
Query: 165 SN 166
S+
Sbjct: 135 SS 136
Score = 45 (20.9 bits), Expect = 6.3e-155, Sum P(2) = 6.3e-155
Identities = 16/84 (19%), Positives = 42/84 (50%)
Query: 94 TQTPKTTNSVVGEKIQEVAEEPSNDLVKPISNQIDNPIDSEKESQPTPPSPKKRKVNVNS 153
+ + KT + +K ++ + + SN+L + ++D+ + E++ T + ++ +S
Sbjct: 137 SSSKKTIENKETKKPEKQSSKQSNNLKRLKRKKMDDDEEDEEDENKTDDNDLDDMLDDDS 196
Query: 154 VSAKEKIA----ELKSNIVLLKKK 173
+ K+ I+ E K ++ K+K
Sbjct: 197 DNEKDSISSKDKEYKEKVLKDKEK 220
Score = 40 (19.1 bits), Expect = 2.1e-154, Sum P(2) = 2.1e-154
Identities = 11/47 (23%), Positives = 21/47 (44%)
Query: 92 LDTQTPKTTNSVVGEKIQEVAEEPSNDLVKPISNQIDNPIDSEKESQ 138
L T K +VV EK+++ ++ + K + + E+E Q
Sbjct: 33 LKTSPKKKREAVVKEKVEKKEKKETKPKRKSSKKNKEEEEEEEQEEQ 79
Score = 37 (18.1 bits), Expect = 4.4e-154, Sum P(2) = 4.4e-154
Identities = 10/57 (17%), Positives = 24/57 (42%)
Query: 106 EKIQEVAEEPSNDLVKPISNQIDNPIDSEKESQPTPPSPKKRKVNVNSVSAKEKIAE 162
+++ ++ P + +++ +KE++P S KK K +E+ E
Sbjct: 28 QELNKLKTSPKKKREAVVKEKVEKK--EKKETKPKRKSSKKNKEEEEEEEQEEQDGE 82
>UNIPROTKB|B4DTU4 [details] [associations]
symbol:LIG1 "DNA ligase" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0051103 "DNA ligation
involved in DNA repair" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0003910 "DNA
ligase (ATP) activity" evidence=IEA] InterPro:IPR000977
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679
PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0006310 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AC011466 GO:GO:0003910
GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 UniGene:Hs.1770 HGNC:HGNC:6598
HOVERGEN:HBG005514 ChiTaRS:LIG1 EMBL:AK300370 IPI:IPI01011603
SMR:B4DTU4 STRING:B4DTU4 Ensembl:ENST00000427526 UCSC:uc010xzg.1
Uniprot:B4DTU4
Length = 888
Score = 1432 (509.1 bits), Expect = 7.4e-150, Sum P(2) = 7.4e-150
Identities = 294/652 (45%), Positives = 416/652 (63%)
Query: 93 DTQTPKTTNSVVGEKIQEVAEEPSNDLVKPISNQIDNPIDSEKESQPTPPSPKKR-KVNV 151
+T T + V K QE+ EE + KP P P P+ KK K
Sbjct: 163 ETPTESVSEPEVATK-QELQEE--EEQTKPPRRA---PKTLSSFFTPRKPAVKKEVKEEE 216
Query: 152 NSVSAKEKIAELKSNIVLLKKKAGEFDPKMVACWEKGERVPFIFLSLVFDMISNETGRIL 211
KE AE + + P ACW+ G++VP++ ++ F+ I + R+
Sbjct: 217 PGAPGKEGAAEGPLDPSGYNPAKNNYHPVEDACWKPGQKVPYLAVARTFEKIEEVSARLR 276
Query: 212 ITDIVCNMLRTVMETTPEDLVPVVYLAANKIAPAHEGLELGIGDASIIKALAEACGRTES 271
+ + + N+LR+V+ +P DL+PV+YL+ N + P +GLELG+GD ++KA+A+A GR
Sbjct: 277 MVETLSNLLRSVVALSPPDLLPVLYLSLNHLGPPQQGLELGVGDGVLLKAVAQATGRQLE 336
Query: 272 HVKKQYQEMGDLGLVAKASRSSQSMMRKPDPLTITKVFDTFRLIAKEAGKDSQEKKKNRI 331
V+ + E GD+GLVA+ SRS+Q +M P PLT + VF FR IA+ G S KK + I
Sbjct: 337 SVRAEAAEKGDVGLVAENSRSTQRLMLPPPPLTASGVFSKFRDIARLTGSASTAKKIDII 396
Query: 332 KALLVAATDCEPQYLIRLLQSKLRIGLAEQTLLAALGQAAVYNEQHSKPPPNI------- 384
K L VA E +++ R L +LR+GLAEQ++LAAL QA + PP +
Sbjct: 397 KGLFVACRHSEARFIARSLSGRLRLGLAEQSVLAALSQAVSLTPPGQEFPPAMVDAGKGK 456
Query: 385 -----QSPLEEAAKIVKQVFSVLPVYEKIVPALLTDGVWNLSNTCSFTPGIPIGPMLAKP 439
++ LEE I+KQ F +P ++I+P LL G+ L C +PGIP+ PMLA P
Sbjct: 457 TAEARKTWLEEQGMILKQTFCEVPDLDRIIPVLLEHGLERLPEHCKLSPGIPLKPMLAHP 516
Query: 440 TKGVSEIVNKFQDMEFTCEYKYDGERAQIHYLEDGSVEIYSRNAERNTGKFPDVVLAVSR 499
T+G+SE++ +F++ FTCEYKYDG+RAQIH LE G V+I+SRN E NTGK+PD++ + +
Sbjct: 517 TRGISEVLKRFEEAAFTCEYKYDGQRAQIHALEGGEVKIFSRNQEDNTGKYPDIISRIPK 576
Query: 500 LKKPSVRSFVLDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIKVDVCIYAFDILYRNG 559
+K PSV SF+LD E VA+DREK++I PFQ L+TR RK V S+I+V VC+YAFD++Y NG
Sbjct: 577 IKLPSVTSFILDTEAVAWDREKKQIQPFQVLTTRKRKEVDASEIQVQVCLYAFDLIYLNG 636
Query: 560 QPLLQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTM 619
+ L++E L RR+ L ++F E G F FAT+L + D+++I +FL+ +V SCEGL++KT+
Sbjct: 637 ESLVREPLSRRRQLLRENFVETEGEFVFATSLDTKDIEQIAEFLEQSVKDSCEGLMVKTL 696
Query: 620 DRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNN 679
D DATYE +KRS NWLKLKKDY++ +GD+LDLV I A+ GRGKR G YG FLLA YD ++
Sbjct: 697 DVDATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRAGRYGGFLLASYDEDS 756
Query: 680 EEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPT 731
EE Q+ICK+GTGFS+ LEE SL++ V+P PRPY R + PD W +P+
Sbjct: 757 EELQAICKLGTGFSDEELEEHHQSLKALVLPSPRPYVRIDGAVIPDHWLDPS 808
Score = 52 (23.4 bits), Expect = 7.4e-150, Sum P(2) = 7.4e-150
Identities = 18/49 (36%), Positives = 23/49 (46%)
Query: 89 RRTLDTQTPKTTNSVVGEKIQEVAEEPSNDLVKPISNQIDNPIDSEKES 137
RRT Q PK T IQEV EE S D + + + ++ KES
Sbjct: 91 RRTARKQLPKRT-------IQEVLEEQSEDEDREAKRKKEEEEETPKES 132
>UNIPROTKB|P18858 [details] [associations]
symbol:LIG1 "DNA ligase 1" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0051103 "DNA ligation
involved in DNA repair" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0051301 "cell division" evidence=IEA] [GO:0006303
"double-strand break repair via nonhomologous end joining"
evidence=IEA] [GO:0042542 "response to hydrogen peroxide"
evidence=IEA] [GO:0003910 "DNA ligase (ATP) activity" evidence=IBA]
[GO:0005634 "nucleus" evidence=IBA] [GO:0005694 "chromosome"
evidence=IBA] [GO:0005739 "mitochondrion" evidence=IBA] [GO:0006273
"lagging strand elongation" evidence=IBA] [GO:0006289
"nucleotide-excision repair" evidence=IBA;TAS] [GO:0003909 "DNA
ligase activity" evidence=IDA] [GO:0033151 "V(D)J recombination"
evidence=IDA] [GO:0006259 "DNA metabolic process" evidence=TAS]
[GO:0009653 "anatomical structure morphogenesis" evidence=TAS]
[GO:0000084 "S phase of mitotic cell cycle" evidence=TAS]
[GO:0000278 "mitotic cell cycle" evidence=TAS] [GO:0000722
"telomere maintenance via recombination" evidence=TAS] [GO:0000723
"telomere maintenance" evidence=TAS] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006271 "DNA strand
elongation involved in DNA replication" evidence=TAS] [GO:0006281
"DNA repair" evidence=TAS] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=TAS] [GO:0006284
"base-excision repair" evidence=TAS] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=TAS]
[GO:0006302 "double-strand break repair" evidence=TAS] [GO:0032201
"telomere maintenance via semi-conservative replication"
evidence=TAS] Reactome:REACT_216 InterPro:IPR000977
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679
PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005739
GO:GO:0005524 GO:GO:0005694 Reactome:REACT_115566 GO:GO:0005654
GO:GO:0051301 GO:GO:0046872 GO:GO:0006284 GO:GO:0003677
GO:GO:0000724 EMBL:CH471177 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0009653 GO:GO:0000084 GO:GO:0000722
Reactome:REACT_383 GO:GO:0006283 DrugBank:DB00290 GO:GO:0032201
GO:GO:0006273 eggNOG:COG1793 HOGENOM:HOG000036006 KO:K10747
OMA:AQVACLY GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10
SUPFAM:SSF117018 TIGRFAMs:TIGR00574 EMBL:M36067 EMBL:AF527418
EMBL:AK314210 EMBL:BC108318 IPI:IPI00219841 PIR:A36048
RefSeq:NP_000225.1 UniGene:Hs.1770 PDB:1X9N PDBsum:1X9N
ProteinModelPortal:P18858 SMR:P18858 DIP:DIP-24215N IntAct:P18858
MINT:MINT-141868 STRING:P18858 PhosphoSite:P18858 DMDM:118773
PaxDb:P18858 PeptideAtlas:P18858 PRIDE:P18858
Ensembl:ENST00000263274 GeneID:3978 KEGG:hsa:3978 UCSC:uc002pia.1
CTD:3978 GeneCards:GC19M048618 HGNC:HGNC:6598 HPA:CAB037015
MIM:126391 neXtProt:NX_P18858 PharmGKB:PA30372 HOVERGEN:HBG005514
InParanoid:P18858 OrthoDB:EOG4RBQJ6 PhylomeDB:P18858
BindingDB:P18858 ChEMBL:CHEMBL5694 ChiTaRS:LIG1
EvolutionaryTrace:P18858 GenomeRNAi:3978 NextBio:15592
ArrayExpress:P18858 Bgee:P18858 CleanEx:HS_LIG1
Genevestigator:P18858 GermOnline:ENSG00000105486 GO:GO:0006297
Uniprot:P18858
Length = 919
Score = 1432 (509.1 bits), Expect = 3.2e-149, Sum P(2) = 3.2e-149
Identities = 294/652 (45%), Positives = 416/652 (63%)
Query: 93 DTQTPKTTNSVVGEKIQEVAEEPSNDLVKPISNQIDNPIDSEKESQPTPPSPKKR-KVNV 151
+T T + V K QE+ EE + KP P P P+ KK K
Sbjct: 194 ETPTESVSEPEVATK-QELQEE--EEQTKPPRRA---PKTLSSFFTPRKPAVKKEVKEEE 247
Query: 152 NSVSAKEKIAELKSNIVLLKKKAGEFDPKMVACWEKGERVPFIFLSLVFDMISNETGRIL 211
KE AE + + P ACW+ G++VP++ ++ F+ I + R+
Sbjct: 248 PGAPGKEGAAEGPLDPSGYNPAKNNYHPVEDACWKPGQKVPYLAVARTFEKIEEVSARLR 307
Query: 212 ITDIVCNMLRTVMETTPEDLVPVVYLAANKIAPAHEGLELGIGDASIIKALAEACGRTES 271
+ + + N+LR+V+ +P DL+PV+YL+ N + P +GLELG+GD ++KA+A+A GR
Sbjct: 308 MVETLSNLLRSVVALSPPDLLPVLYLSLNHLGPPQQGLELGVGDGVLLKAVAQATGRQLE 367
Query: 272 HVKKQYQEMGDLGLVAKASRSSQSMMRKPDPLTITKVFDTFRLIAKEAGKDSQEKKKNRI 331
V+ + E GD+GLVA+ SRS+Q +M P PLT + VF FR IA+ G S KK + I
Sbjct: 368 SVRAEAAEKGDVGLVAENSRSTQRLMLPPPPLTASGVFSKFRDIARLTGSASTAKKIDII 427
Query: 332 KALLVAATDCEPQYLIRLLQSKLRIGLAEQTLLAALGQAAVYNEQHSKPPPNI------- 384
K L VA E +++ R L +LR+GLAEQ++LAAL QA + PP +
Sbjct: 428 KGLFVACRHSEARFIARSLSGRLRLGLAEQSVLAALSQAVSLTPPGQEFPPAMVDAGKGK 487
Query: 385 -----QSPLEEAAKIVKQVFSVLPVYEKIVPALLTDGVWNLSNTCSFTPGIPIGPMLAKP 439
++ LEE I+KQ F +P ++I+P LL G+ L C +PGIP+ PMLA P
Sbjct: 488 TAEARKTWLEEQGMILKQTFCEVPDLDRIIPVLLEHGLERLPEHCKLSPGIPLKPMLAHP 547
Query: 440 TKGVSEIVNKFQDMEFTCEYKYDGERAQIHYLEDGSVEIYSRNAERNTGKFPDVVLAVSR 499
T+G+SE++ +F++ FTCEYKYDG+RAQIH LE G V+I+SRN E NTGK+PD++ + +
Sbjct: 548 TRGISEVLKRFEEAAFTCEYKYDGQRAQIHALEGGEVKIFSRNQEDNTGKYPDIISRIPK 607
Query: 500 LKKPSVRSFVLDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIKVDVCIYAFDILYRNG 559
+K PSV SF+LD E VA+DREK++I PFQ L+TR RK V S+I+V VC+YAFD++Y NG
Sbjct: 608 IKLPSVTSFILDTEAVAWDREKKQIQPFQVLTTRKRKEVDASEIQVQVCLYAFDLIYLNG 667
Query: 560 QPLLQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTM 619
+ L++E L RR+ L ++F E G F FAT+L + D+++I +FL+ +V SCEGL++KT+
Sbjct: 668 ESLVREPLSRRRQLLRENFVETEGEFVFATSLDTKDIEQIAEFLEQSVKDSCEGLMVKTL 727
Query: 620 DRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNN 679
D DATYE +KRS NWLKLKKDY++ +GD+LDLV I A+ GRGKR G YG FLLA YD ++
Sbjct: 728 DVDATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRAGRYGGFLLASYDEDS 787
Query: 680 EEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPT 731
EE Q+ICK+GTGFS+ LEE SL++ V+P PRPY R + PD W +P+
Sbjct: 788 EELQAICKLGTGFSDEELEEHHQSLKALVLPSPRPYVRIDGAVIPDHWLDPS 839
Score = 46 (21.3 bits), Expect = 3.2e-149, Sum P(2) = 3.2e-149
Identities = 15/30 (50%), Positives = 15/30 (50%)
Query: 89 RRTLDTQTPKTTNSVVGEKIQEVAEEPSND 118
RRT Q PK T IQEV EE S D
Sbjct: 121 RRTARKQLPKRT-------IQEVLEEQSED 143
>UNIPROTKB|F1M624 [details] [associations]
symbol:Lig1 "DNA ligase" species:10116 "Rattus norvegicus"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003910 "DNA ligase
(ATP) activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0051103 "DNA
ligation involved in DNA repair" evidence=IEA] InterPro:IPR000977
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679
PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160 RGD:621424
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0003910
GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 GeneTree:ENSGT00700000104556 IPI:IPI00950231
Ensembl:ENSRNOT00000019799 ArrayExpress:F1M624 Uniprot:F1M624
Length = 912
Score = 1411 (501.8 bits), Expect = 3.4e-149, Sum P(3) = 3.4e-149
Identities = 270/567 (47%), Positives = 391/567 (68%)
Query: 177 FDPKMVACWEKGERVPFIFLSLVFDMISNETGRILITDIVCNMLRTVMETTPEDLVPVVY 236
+ P ACW+ G++VPF+ ++ F+ I + R+ + + + N+LR+V+ +P DL+PV+Y
Sbjct: 267 YHPIEDACWKHGQKVPFLAVARTFEKIEEVSARLKMVETLSNLLRSVVALSPTDLLPVLY 326
Query: 237 LAANKIAPAHEGLELGIGDASIIKALAEACGRTESHVKKQYQEMGDLGLVAKASRSSQSM 296
L+ N++ P +GLELG+GD ++KA+A+A GR ++ + E GD+GLVA+ SRS+Q +
Sbjct: 327 LSLNRLGPPQQGLELGVGDGVLLKAVAQATGRQLESIRAEVAEKGDVGLVAENSRSTQRL 386
Query: 297 MRKPDPLTITKVFDTFRLIAKEAGKDSQEKKKNRIKALLVAATDCEPQYLIRLLQSKLRI 356
M P PLT++ VF F IA+ G S KK + IK L VA E +++ R L +LR+
Sbjct: 387 MLPPPPLTVSGVFTKFCDIARLTGSASMSKKMDIIKGLFVACRYSEARFIARSLSGRLRL 446
Query: 357 GLAEQTLLAALGQA------------AVYNEQHSKPPPNIQSPLEEAAKIVKQVFSVLPV 404
GLAEQ++LAAL QA AV + K + LEE I+KQ F +P
Sbjct: 447 GLAEQSVLAALAQAVSLTPPGQEFPTAVVDAGKGKTAEARKMWLEEQGMILKQTFCEVPD 506
Query: 405 YEKIVPALLTDGVWNLSNTCSFTPGIPIGPMLAKPTKGVSEIVNKFQDMEFTCEYKYDGE 464
++I+P LL G+ +L C +PG+P+ PMLA PT+GV E++ +F++++FTCEYKYDG+
Sbjct: 507 LDRIIPVLLEHGLESLPEHCKLSPGVPLKPMLAHPTRGVREVLKRFEEVDFTCEYKYDGQ 566
Query: 465 RAQIHYLEDGSVEIYSRNAERNTGKFPDVVLAVSRLKKPSVRSFVLDCEIVAYDREKQKI 524
RAQIH LE G V+I+SRN E N+GK+PD++ + ++K PSV SF+LD E VA+DREK++I
Sbjct: 567 RAQIHVLEGGEVKIFSRNQEDNSGKYPDIISRIPKIKHPSVTSFILDTEAVAWDREKKQI 626
Query: 525 LPFQTLSTRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGF 584
PFQ L+TR RK V S+I+V VC+YAFD++Y NG+ L ++ L RR+ L ++F E G
Sbjct: 627 QPFQVLTTRKRKEVDASEIQVQVCLYAFDLIYLNGESLARQPLSRRRQLLRENFVETEGE 686
Query: 585 FQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIES 644
F FAT+L + D+++I +FL+ +V SCEGL++KT+D DATYE +KRS NWLKLKKDY+E
Sbjct: 687 FVFATSLDTKDIEQIAEFLEQSVKDSCEGLMVKTLDVDATYEIAKRSHNWLKLKKDYLEG 746
Query: 645 IGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSL 704
+GD+LDLV I A+ GRGKR G YG FLLA YD +EE Q+ICK+GTGFS+ LEE S+
Sbjct: 747 VGDTLDLVVIGAYLGRGKRAGRYGGFLLAAYDEESEELQAICKLGTGFSDEELEEHHQSM 806
Query: 705 RSKVIPKPRPYYRFADTISPDVWFEPT 731
++ ++P PRPY R ++PD W +P+
Sbjct: 807 QALLLPTPRPYVRIDGAVAPDHWLDPS 833
Score = 56 (24.8 bits), Expect = 4.6e-148, Sum P(2) = 4.6e-148
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 105 GEKIQEV-AEEPSNDLVKPISNQIDNPIDSEKESQPTPPSP 144
G K+ +V + E ++ P + Q+ P+ K+S +PPSP
Sbjct: 57 GRKVAQVLSSEGEDEDEAPGTPQVQKPVSDSKQS--SPPSP 95
Score = 42 (19.8 bits), Expect = 3.4e-149, Sum P(3) = 3.4e-149
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 89 RRTLDTQTPK---TTNSVVGEKIQEVAEEPS 116
R+ DTQTP T V +K ++V ++P+
Sbjct: 146 RKKEDTQTPTESLTEAEEVKQKEEQVEDQPT 176
Score = 40 (19.1 bits), Expect = 3.4e-149, Sum P(3) = 3.4e-149
Identities = 17/60 (28%), Positives = 27/60 (45%)
Query: 112 AEEPSNDLVKPISNQIDNPIDSE--KESQPTPPSPKKRKVN-VNSVSAKEKIAELKSNIV 168
A +P+N P + +PI+ K Q P R + VSA+ K+ E SN++
Sbjct: 254 APDPTN--YNPSKSNY-HPIEDACWKHGQKVPFLAVARTFEKIEEVSARLKMVETLSNLL 310
>UNIPROTKB|F1M8E6 [details] [associations]
symbol:Lig1 "DNA ligase" species:10116 "Rattus norvegicus"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003910 "DNA ligase
(ATP) activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0051103 "DNA
ligation involved in DNA repair" evidence=IEA] InterPro:IPR000977
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679
PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160 RGD:621424
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0003910
GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 IPI:IPI00553920 Ensembl:ENSRNOT00000064178
ArrayExpress:F1M8E6 Uniprot:F1M8E6
Length = 913
Score = 1411 (501.8 bits), Expect = 3.4e-149, Sum P(3) = 3.4e-149
Identities = 270/567 (47%), Positives = 391/567 (68%)
Query: 177 FDPKMVACWEKGERVPFIFLSLVFDMISNETGRILITDIVCNMLRTVMETTPEDLVPVVY 236
+ P ACW+ G++VPF+ ++ F+ I + R+ + + + N+LR+V+ +P DL+PV+Y
Sbjct: 268 YHPIEDACWKHGQKVPFLAVARTFEKIEEVSARLKMVETLSNLLRSVVALSPTDLLPVLY 327
Query: 237 LAANKIAPAHEGLELGIGDASIIKALAEACGRTESHVKKQYQEMGDLGLVAKASRSSQSM 296
L+ N++ P +GLELG+GD ++KA+A+A GR ++ + E GD+GLVA+ SRS+Q +
Sbjct: 328 LSLNRLGPPQQGLELGVGDGVLLKAVAQATGRQLESIRAEVAEKGDVGLVAENSRSTQRL 387
Query: 297 MRKPDPLTITKVFDTFRLIAKEAGKDSQEKKKNRIKALLVAATDCEPQYLIRLLQSKLRI 356
M P PLT++ VF F IA+ G S KK + IK L VA E +++ R L +LR+
Sbjct: 388 MLPPPPLTVSGVFTKFCDIARLTGSASMSKKMDIIKGLFVACRYSEARFIARSLSGRLRL 447
Query: 357 GLAEQTLLAALGQA------------AVYNEQHSKPPPNIQSPLEEAAKIVKQVFSVLPV 404
GLAEQ++LAAL QA AV + K + LEE I+KQ F +P
Sbjct: 448 GLAEQSVLAALAQAVSLTPPGQEFPTAVVDAGKGKTAEARKMWLEEQGMILKQTFCEVPD 507
Query: 405 YEKIVPALLTDGVWNLSNTCSFTPGIPIGPMLAKPTKGVSEIVNKFQDMEFTCEYKYDGE 464
++I+P LL G+ +L C +PG+P+ PMLA PT+GV E++ +F++++FTCEYKYDG+
Sbjct: 508 LDRIIPVLLEHGLESLPEHCKLSPGVPLKPMLAHPTRGVREVLKRFEEVDFTCEYKYDGQ 567
Query: 465 RAQIHYLEDGSVEIYSRNAERNTGKFPDVVLAVSRLKKPSVRSFVLDCEIVAYDREKQKI 524
RAQIH LE G V+I+SRN E N+GK+PD++ + ++K PSV SF+LD E VA+DREK++I
Sbjct: 568 RAQIHVLEGGEVKIFSRNQEDNSGKYPDIISRIPKIKHPSVTSFILDTEAVAWDREKKQI 627
Query: 525 LPFQTLSTRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGF 584
PFQ L+TR RK V S+I+V VC+YAFD++Y NG+ L ++ L RR+ L ++F E G
Sbjct: 628 QPFQVLTTRKRKEVDASEIQVQVCLYAFDLIYLNGESLARQPLSRRRQLLRENFVETEGE 687
Query: 585 FQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIES 644
F FAT+L + D+++I +FL+ +V SCEGL++KT+D DATYE +KRS NWLKLKKDY+E
Sbjct: 688 FVFATSLDTKDIEQIAEFLEQSVKDSCEGLMVKTLDVDATYEIAKRSHNWLKLKKDYLEG 747
Query: 645 IGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSL 704
+GD+LDLV I A+ GRGKR G YG FLLA YD +EE Q+ICK+GTGFS+ LEE S+
Sbjct: 748 VGDTLDLVVIGAYLGRGKRAGRYGGFLLAAYDEESEELQAICKLGTGFSDEELEEHHQSM 807
Query: 705 RSKVIPKPRPYYRFADTISPDVWFEPT 731
++ ++P PRPY R ++PD W +P+
Sbjct: 808 QALLLPTPRPYVRIDGAVAPDHWLDPS 834
Score = 56 (24.8 bits), Expect = 4.6e-148, Sum P(2) = 4.6e-148
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 105 GEKIQEV-AEEPSNDLVKPISNQIDNPIDSEKESQPTPPSP 144
G K+ +V + E ++ P + Q+ P+ K+S +PPSP
Sbjct: 58 GRKVAQVLSSEGEDEDEAPGTPQVQKPVSDSKQS--SPPSP 96
Score = 42 (19.8 bits), Expect = 3.4e-149, Sum P(3) = 3.4e-149
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 89 RRTLDTQTPK---TTNSVVGEKIQEVAEEPS 116
R+ DTQTP T V +K ++V ++P+
Sbjct: 147 RKKEDTQTPTESLTEAEEVKQKEEQVEDQPT 177
Score = 40 (19.1 bits), Expect = 3.4e-149, Sum P(3) = 3.4e-149
Identities = 17/60 (28%), Positives = 27/60 (45%)
Query: 112 AEEPSNDLVKPISNQIDNPIDSE--KESQPTPPSPKKRKVN-VNSVSAKEKIAELKSNIV 168
A +P+N P + +PI+ K Q P R + VSA+ K+ E SN++
Sbjct: 255 APDPTN--YNPSKSNY-HPIEDACWKHGQKVPFLAVARTFEKIEEVSARLKMVETLSNLL 311
>UNIPROTKB|F1RL99 [details] [associations]
symbol:LIG1 "DNA ligase" species:9823 "Sus scrofa"
[GO:0042542 "response to hydrogen peroxide" evidence=IEA]
[GO:0006303 "double-strand break repair via nonhomologous end
joining" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003910 "DNA ligase (ATP) activity" evidence=IEA] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0051103 "DNA ligation involved in DNA repair"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000977 InterPro:IPR012308 InterPro:IPR012309
InterPro:IPR012310 InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 OMA:AQVACLY
GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 GeneTree:ENSGT00700000104556 EMBL:FP102640
Ensembl:ENSSSCT00000003469 Uniprot:F1RL99
Length = 915
Score = 1409 (501.1 bits), Expect = 5.2e-149, Sum P(2) = 5.2e-149
Identities = 282/606 (46%), Positives = 400/606 (66%)
Query: 139 PTPPSPKKRKVNVNSVSAKEKI-AELKSNIVLLKKKAGEFDPKMVACWEKGERVPFIFLS 197
P P+ KK +VN SA K A + + P ACW+ G+RVP++ ++
Sbjct: 231 PRKPAAKK-EVNEEGPSALRKDEATGHPDPPSYNPAKNNYHPVQDACWQAGQRVPYLAVA 289
Query: 198 LVFDMISNETGRILITDIVCNMLRTVMETTPEDLVPVVYLAANKIAPAHEGLELGIGDAS 257
F+ I + R+ + + + N+LR+V+ +P DL+PV+YL+ N++ P +GLELGIGD
Sbjct: 290 RTFEKIEEVSARLRMVETLSNLLRSVVALSPADLLPVLYLSLNRLGPPQQGLELGIGDGI 349
Query: 258 IIKALAEACGRTESHVKKQYQEMGDLGLVAKASRSSQSMMRKPDPLTITKVFDTFRLIAK 317
++KA+A+A GR V+ + E GD+GLVA++SRS+Q ++ P LT +F FR IA+
Sbjct: 350 LLKAVAQATGRQLESVRAEVAEKGDVGLVAESSRSTQRLVLPPPALTAAGIFTKFRDIAQ 409
Query: 318 EAGKDSQEKKKNRIKALLVAATDCEPQYLIRLLQSKLRIGLAEQTLLAALGQAAVYNEQH 377
AG S KK IK L VA E +++ R L +LR+GLAEQ++LAAL QAA
Sbjct: 410 LAGSASTAKKMEIIKGLFVACRHSEARFIARALSGRLRLGLAEQSVLAALAQAASLTPPG 469
Query: 378 SKPPPNI------------QSPLEEAAKIVKQVFSVLPVYEKIVPALLTDGVWNLSNTCS 425
+ PP + ++ LEE I+KQ F +P ++IVP LL G+ L C
Sbjct: 470 QEFPPAMVDAGKGKTAEARKTWLEEQGMILKQTFCEVPDLDRIVPVLLEHGLERLPEHCR 529
Query: 426 FTPGIPIGPMLAKPTKGVSEIVNKFQDMEFTCEYKYDGERAQIHYLEDGSVEIYSRNAER 485
+PG+P+ PMLA PT+GVSE++ +F++ FTCEYKYDG+RAQIH LE G V+I+SRN E
Sbjct: 530 LSPGVPLKPMLAHPTRGVSEVLKRFEEAAFTCEYKYDGQRAQIHVLEGGEVKIFSRNQED 589
Query: 486 NTGKFPDVVLAVSRLKKPSVRSFVLDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIKV 545
NTG++PD++ + ++K PSV SF+LD E VA+DREK++I PFQ L+TR RK V ++I+V
Sbjct: 590 NTGRYPDIISRIPKIKLPSVTSFILDAEAVAWDREKKQIQPFQVLTTRKRKEVDAAEIQV 649
Query: 546 DVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDA 605
VC+YAFD++Y NG+ L++E L RR+ L ++F E G F FAT+L + D D+I +FL+
Sbjct: 650 QVCLYAFDLIYLNGESLVREPLSRRRQLLRENFVETEGEFVFATSLDTKDTDQIAEFLEQ 709
Query: 606 AVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTG 665
+V SCEGL++KT+D DATYE +KRS NWLKLKKDY++ + D+LDLV I A+ GRGKR G
Sbjct: 710 SVKDSCEGLMVKTLDVDATYEIAKRSHNWLKLKKDYLDGVSDTLDLVVIGAYLGRGKRAG 769
Query: 666 VYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPD 725
YG FLLA YD +EE Q+ICK+GTGFS+ LE SL++ V+P PR Y R ++PD
Sbjct: 770 RYGGFLLASYDEESEELQAICKLGTGFSDEELEAHHQSLQALVLPAPRSYVRADGAVAPD 829
Query: 726 VWFEPT 731
W +P+
Sbjct: 830 HWLDPS 835
Score = 67 (28.6 bits), Expect = 5.2e-149, Sum P(2) = 5.2e-149
Identities = 17/56 (30%), Positives = 27/56 (48%)
Query: 92 LDTQTPKTTNSVVGEKIQEVAEEPSNDLVKPISNQIDNPIDSEKESQPT-PPSPKK 146
L+ Q+ K +E AE P+ L +P ++ ++E+ QPT PP P K
Sbjct: 131 LEEQSEDKDREAKRPKTEEEAETPTESLTEP---EVSKKQEAEEGDQPTTPPEPPK 183
>MGI|MGI:101789 [details] [associations]
symbol:Lig1 "ligase I, DNA, ATP-dependent" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003909 "DNA ligase
activity" evidence=ISO] [GO:0003910 "DNA ligase (ATP) activity"
evidence=IBA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO;IBA;IDA] [GO:0005694 "chromosome"
evidence=IBA] [GO:0005739 "mitochondrion" evidence=IBA] [GO:0006260
"DNA replication" evidence=IMP] [GO:0006266 "DNA ligation"
evidence=IBA] [GO:0006273 "lagging strand elongation" evidence=IBA]
[GO:0006281 "DNA repair" evidence=ISO;IMP] [GO:0006303
"double-strand break repair via nonhomologous end joining"
evidence=IMP] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0007049 "cell cycle" evidence=IEA] [GO:0016874 "ligase
activity" evidence=IEA] [GO:0042542 "response to hydrogen peroxide"
evidence=IMP] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0051103 "DNA ligation involved in DNA repair" evidence=IEA]
[GO:0051301 "cell division" evidence=IEA] InterPro:IPR000977
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679
PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160 MGI:MGI:101789
GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694
GO:GO:0051301 GO:GO:0046872 GO:GO:0003677 GO:GO:0007049
GO:GO:0006310 GO:GO:0042542 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0006303 GO:GO:0006273 eggNOG:COG1793
KO:K10747 GO:GO:0003910 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 CTD:3978 HOVERGEN:HBG005514 EMBL:U04674
EMBL:U19604 IPI:IPI00473314 PIR:I48921 RefSeq:NP_034845.2
UniGene:Mm.288179 UniGene:Mm.421129 ProteinModelPortal:P37913
SMR:P37913 STRING:P37913 PhosphoSite:P37913 PaxDb:P37913
PRIDE:P37913 GeneID:16881 KEGG:mmu:16881 InParanoid:P37913
NextBio:290882 CleanEx:MM_LIG1 Genevestigator:P37913
GermOnline:ENSMUSG00000056394 Uniprot:P37913
Length = 916
Score = 1418 (504.2 bits), Expect = 2.2e-148, Sum P(2) = 2.2e-148
Identities = 272/567 (47%), Positives = 388/567 (68%)
Query: 177 FDPKMVACWEKGERVPFIFLSLVFDMISNETGRILITDIVCNMLRTVMETTPEDLVPVVY 236
+ P ACW+ G++VPF+ ++ F+ I + R+ + + + N+LR+V+ +P DL+PV+Y
Sbjct: 271 YHPIEDACWKHGQKVPFLAVARTFEKIEEVSARLKMVETLSNLLRSVVALSPPDLLPVLY 330
Query: 237 LAANKIAPAHEGLELGIGDASIIKALAEACGRTESHVKKQYQEMGDLGLVAKASRSSQSM 296
L+ N++ P +GLELG+GD ++KA+A+A GR ++ + E GD+GLVA+ SRS+Q +
Sbjct: 331 LSLNRLGPPQQGLELGVGDGVLLKAVAQATGRQLESIRAEVAEKGDVGLVAENSRSTQRL 390
Query: 297 MRKPDPLTITKVFDTFRLIAKEAGKDSQEKKKNRIKALLVAATDCEPQYLIRLLQSKLRI 356
M P PLTI+ VF F IA+ G S KK + IK L VA E +Y+ R L +LR+
Sbjct: 391 MLPPPPLTISGVFTKFCDIARLTGSASMAKKMDIIKGLFVACRHSEARYIARSLSGRLRL 450
Query: 357 GLAEQTLLAALGQAAVYNEQHSKPPPNIQSP------------LEEAAKIVKQVFSVLPV 404
GLAEQ++LAAL QA + P + LEE I+KQ F +P
Sbjct: 451 GLAEQSVLAALAQAVSLTPPGQEFPTVVVDAGKGKTAEARKMWLEEQGMILKQTFCEVPD 510
Query: 405 YEKIVPALLTDGVWNLSNTCSFTPGIPIGPMLAKPTKGVSEIVNKFQDMEFTCEYKYDGE 464
++I+P LL G+ L C +PG+P+ PMLA PT+GVSE++ +F++++FTCEYKYDG+
Sbjct: 511 LDRIIPVLLEHGLERLPEHCKLSPGVPLKPMLAHPTRGVSEVLKRFEEVDFTCEYKYDGQ 570
Query: 465 RAQIHYLEDGSVEIYSRNAERNTGKFPDVVLAVSRLKKPSVRSFVLDCEIVAYDREKQKI 524
RAQIH LE G V+I+SRN E NTGK+PD++ + ++K PSV SF+LD E VA+DREK++I
Sbjct: 571 RAQIHVLEGGEVKIFSRNQEDNTGKYPDIISRIPKIKHPSVTSFILDTEAVAWDREKKQI 630
Query: 525 LPFQTLSTRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGF 584
PFQ L+TR RK V S+I+V VC+YAFD++Y NG+ L+++ L RR+ L ++F E G
Sbjct: 631 QPFQVLTTRKRKEVDASEIQVQVCLYAFDLIYLNGESLVRQPLSRRRQLLRENFVETEGE 690
Query: 585 FQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIES 644
F F T+L + D ++I +FL+ +V SCEGL++KT+D DATYE +KRS NWLKLKKDY++
Sbjct: 691 FVFTTSLDTKDTEQIAEFLEQSVKDSCEGLMVKTLDVDATYEIAKRSHNWLKLKKDYLDG 750
Query: 645 IGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSL 704
+GD+LDLV I A+ GRGKR G YG FLLA YD +EE Q+ICK+GTGFS+ LEE SL
Sbjct: 751 VGDTLDLVVIGAYLGRGKRAGRYGGFLLAAYDEESEELQAICKLGTGFSDEELEEHHQSL 810
Query: 705 RSKVIPKPRPYYRFADTISPDVWFEPT 731
++ V+P PRPY R ++PD W +P+
Sbjct: 811 QALVLPTPRPYVRIDGAVAPDHWLDPS 837
Score = 52 (23.4 bits), Expect = 2.2e-148, Sum P(2) = 2.2e-148
Identities = 18/63 (28%), Positives = 34/63 (53%)
Query: 97 PKTTNSV--VGEKIQEVAE-EPSNDLVKPISNQIDNPI-DSEKESQPTPPS-PKKRKV-N 150
P++ + V G K+ +V E ++ P + ++ P+ DSE+ S P+P + P+ V N
Sbjct: 47 PESDSPVKRTGRKVAQVLSCEGEDEDEAPGTPKVQKPVSDSEQSSPPSPDTCPENSPVFN 106
Query: 151 VNS 153
+S
Sbjct: 107 CSS 109
Score = 42 (19.8 bits), Expect = 2.5e-147, Sum P(2) = 2.5e-147
Identities = 17/58 (29%), Positives = 26/58 (44%)
Query: 114 EPSNDLVKPISNQIDNPIDSE--KESQPTPPSPKKRKVN-VNSVSAKEKIAELKSNIV 168
+P+N P N +PI+ K Q P R + VSA+ K+ E SN++
Sbjct: 260 DPAN--YNPSKNNY-HPIEDACWKHGQKVPFLAVARTFEKIEEVSARLKMVETLSNLL 314
>UNIPROTKB|F6URE1 [details] [associations]
symbol:LIG1 "DNA ligase" species:9615 "Canis lupus
familiaris" [GO:0003910 "DNA ligase (ATP) activity" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0051103 "DNA ligation involved in DNA repair" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000977
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679
PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0006310 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 OMA:AQVACLY GO:GO:0003910
GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 GeneTree:ENSGT00700000104556
Ensembl:ENSCAFT00000006495 EMBL:AAEX03000828 Uniprot:F6URE1
Length = 911
Score = 1411 (501.8 bits), Expect = 1.6e-147, Sum P(2) = 1.6e-147
Identities = 285/651 (43%), Positives = 415/651 (63%)
Query: 93 DTQTPKTTNSVVGEKIQEVAEEPSNDLVKPISNQIDNPIDSEKESQPTPPSPKKRKVNVN 152
+T P +S + + E + DL KP + P P P+ KK +
Sbjct: 186 ETSQPPV-DSTLEPAVSGKQEAQNEDLAKPPTRA---PKTVSSFFAPRKPATKKEGKEED 241
Query: 153 SVSAKEKIAELKSNIVLLKKKAGEFDPKMVACWEKGERVPFIFLSLVFDMISNETGRILI 212
+ +++ + + + P ACW+ G++VP++ ++ F+ I + R+ +
Sbjct: 242 PGTPRQEETKGPLDPPSYNPAKNNYHPIDDACWKPGQKVPYLAVARTFEKIEEVSARLRM 301
Query: 213 TDIVCNMLRTVMETTPEDLVPVVYLAANKIAPAHEGLELGIGDASIIKALAEACGRTESH 272
+ + N+LR+V+ +P DL+P++YL+ N++ P +GLELG+GD ++KA+A+A GR
Sbjct: 302 VETLSNLLRSVVALSPPDLLPILYLSLNRLGPPQQGLELGVGDGVLLKAVAQATGRQLDS 361
Query: 273 VKKQYQEMGDLGLVAKASRSSQSMMRKPDPLTITKVFDTFRLIAKEAGKDSQEKKKNRIK 332
VK + E GD+GLVA+ SRS+Q +M P LT VF FR IA+ AG S KK + IK
Sbjct: 362 VKAEAAEKGDVGLVAENSRSTQRLMLPPPALTAAGVFAKFRDIARLAGSASTAKKIDVIK 421
Query: 333 ALLVAATDCEPQYLIRLLQSKLRIGLAEQTLLAALGQAAVYNEQHSKPPPNI-------- 384
L VA E +++ R L +LR+GLAEQ++LAAL QA + PP +
Sbjct: 422 GLFVACRHSEARFIARALSGRLRLGLAEQSVLAALAQAVSLTPPGQEFPPAVVDAGKGRT 481
Query: 385 ----QSPLEEAAKIVKQVFSVLPVYEKIVPALLTDGVWNLSNTCSFTPGIPIGPMLAKPT 440
++ LEE I+KQ F +P ++I+P LL G+ +L C +PG+P+ PMLA PT
Sbjct: 482 AEARKTWLEEQGMILKQTFCEVPDLDRIIPVLLEHGLEHLPEHCRLSPGVPLKPMLAHPT 541
Query: 441 KGVSEIVNKFQDMEFTCEYKYDGERAQIHYLEDGSVEIYSRNAERNTGKFPDVVLAVSRL 500
+GVSE++ +F++ FTCEYKYDG+RAQIH LE G V+I+SRN E NTGK+PD++ + ++
Sbjct: 542 RGVSEVLKRFEEAAFTCEYKYDGQRAQIHVLEGGEVKIFSRNQEDNTGKYPDIISRIPKI 601
Query: 501 KKPSVRSFVLDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIKVDVCIYAFDILYRNGQ 560
K PSV SF+LD E VA+DREK++I PFQ L+TR RK V ++I+V VC+YAFD++Y NG+
Sbjct: 602 KLPSVTSFILDTEAVAWDREKKQIQPFQVLTTRKRKEVDAAEIQVQVCLYAFDLIYLNGE 661
Query: 561 PLLQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMD 620
L++E L RR+ L ++F E G F FAT+L + D D+I +FL+ +V SCEGL++KT+D
Sbjct: 662 SLVREPLSRRRQLLRENFVETEGEFVFATSLDTKDTDQIAEFLEQSVKDSCEGLMVKTLD 721
Query: 621 RDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNE 680
DATYE +KRS NWLKLKKDY++ +GD+LDLV I A+ GRGKR G YG FLLA YD +E
Sbjct: 722 VDATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRAGRYGGFLLAAYDEESE 781
Query: 681 EFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPT 731
E Q+ICK+GTGFS+ LEE L++ V+P PR Y R ++PD W +P+
Sbjct: 782 ELQAICKLGTGFSDEELEEHYQRLQALVLPTPRSYVRVDGAVAPDHWLDPS 832
Score = 51 (23.0 bits), Expect = 1.6e-147, Sum P(2) = 1.6e-147
Identities = 20/54 (37%), Positives = 23/54 (42%)
Query: 89 RRTLDTQTPKTTNSVVGEKIQEVAEEPSNDLVKPISNQIDNPIDSEKESQPTPP 142
RRT Q PK T IQ+V EE S D D +KE + TPP
Sbjct: 120 RRTARKQLPKRT-------IQDVLEEQSKDE--------DREAKKKKEEEETPP 158
>UNIPROTKB|F5GZ28 [details] [associations]
symbol:LIG1 "DNA ligase" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0051103 "DNA ligation
involved in DNA repair" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0003910 "DNA
ligase (ATP) activity" evidence=IEA] InterPro:IPR000977
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679
PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0006310 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AC011466 GO:GO:0003910
GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 HGNC:HGNC:6598 ChiTaRS:LIG1 IPI:IPI01010243
ProteinModelPortal:F5GZ28 SMR:F5GZ28 Ensembl:ENST00000536218
UCSC:uc010xzf.1 ArrayExpress:F5GZ28 Bgee:F5GZ28 Uniprot:F5GZ28
Length = 851
Score = 1437 (510.9 bits), Expect = 3.9e-147, P = 3.9e-147
Identities = 297/657 (45%), Positives = 419/657 (63%)
Query: 89 RRT-LDTQTPKTTNSVVGEKIQEVAEEPSNDLVKPISNQIDNPIDSEKESQPTPPSPKKR 147
RRT +T T + V K QE+ EE + KP P P P+ KK
Sbjct: 121 RRTEAETPTESVSEPEVATK-QELQEE--EEQTKPPRRA---PKTLSSFFTPRKPAVKKE 174
Query: 148 -KVNVNSVSAKEKIAELKSNIVLLKKKAGEFDPKMVACWEKGERVPFIFLSLVFDMISNE 206
K KE AE + + P ACW+ G++VP++ ++ F+ I
Sbjct: 175 VKEEEPGAPGKEGAAEGPLDPSGYNPAKNNYHPVEDACWKPGQKVPYLAVARTFEKIEEV 234
Query: 207 TGRILITDIVCNMLRTVMETTPEDLVPVVYLAANKIAPAHEGLELGIGDASIIKALAEAC 266
+ R+ + + + N+LR+V+ +P DL+PV+YL+ N + P +GLELG+GD ++KA+A+A
Sbjct: 235 SARLRMVETLSNLLRSVVALSPPDLLPVLYLSLNHLGPPQQGLELGVGDGVLLKAVAQAT 294
Query: 267 GRTESHVKKQYQEMGDLGLVAKASRSSQSMMRKPDPLTITKVFDTFRLIAKEAGKDSQEK 326
GR V+ + E GD+GLVA+ SRS+Q +M P PLT + VF FR IA+ G S K
Sbjct: 295 GRQLESVRAEAAEKGDVGLVAENSRSTQRLMLPPPPLTASGVFSKFRDIARLTGSASTAK 354
Query: 327 KKNRIKALLVAATDCEPQYLIRLLQSKLRIGLAEQTLLAALGQAAVYNEQHSKPPPNI-- 384
K + IK L VA E +++ R L +LR+GLAEQ++LAAL QA + PP +
Sbjct: 355 KIDIIKGLFVACRHSEARFIARSLSGRLRLGLAEQSVLAALSQAVSLTPPGQEFPPAMVD 414
Query: 385 ----------QSPLEEAAKIVKQVFSVLPVYEKIVPALLTDGVWNLSNTCSFTPGIPIGP 434
++ LEE I+KQ F +P ++I+P LL G+ L C +PGIP+ P
Sbjct: 415 AGKGKTAEARKTWLEEQGMILKQTFCEVPDLDRIIPVLLEHGLERLPEHCKLSPGIPLKP 474
Query: 435 MLAKPTKGVSEIVNKFQDMEFTCEYKYDGERAQIHYLEDGSVEIYSRNAERNTGKFPDVV 494
MLA PT+G+SE++ +F++ FTCEYKYDG+RAQIH LE G V+I+SRN E NTGK+PD++
Sbjct: 475 MLAHPTRGISEVLKRFEEAAFTCEYKYDGQRAQIHALEGGEVKIFSRNQEDNTGKYPDII 534
Query: 495 LAVSRLKKPSVRSFVLDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIKVDVCIYAFDI 554
+ ++K PSV SF+LD E VA+DREK++I PFQ L+TR RK V S+I+V VC+YAFD+
Sbjct: 535 SRIPKIKLPSVTSFILDTEAVAWDREKKQIQPFQVLTTRKRKEVDASEIQVQVCLYAFDL 594
Query: 555 LYRNGQPLLQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGL 614
+Y NG+ L++E L RR+ L ++F E G F FAT+L + D+++I +FL+ +V SCEGL
Sbjct: 595 IYLNGESLVREPLSRRRQLLRENFVETEGEFVFATSLDTKDIEQIAEFLEQSVKDSCEGL 654
Query: 615 IIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLAC 674
++KT+D DATYE +KRS NWLKLKKDY++ +GD+LDLV I A+ GRGKR G YG FLLA
Sbjct: 655 MVKTLDVDATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRAGRYGGFLLAS 714
Query: 675 YDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPT 731
YD ++EE Q+ICK+GTGFS+ LEE SL++ V+P PRPY R + PD W +P+
Sbjct: 715 YDEDSEELQAICKLGTGFSDEELEEHHQSLKALVLPSPRPYVRIDGAVIPDHWLDPS 771
>UNIPROTKB|A4IFC8 [details] [associations]
symbol:LIG1 "DNA ligase" species:9913 "Bos taurus"
[GO:0006289 "nucleotide-excision repair" evidence=IBA] [GO:0006273
"lagging strand elongation" evidence=IBA] [GO:0006266 "DNA
ligation" evidence=IBA] [GO:0005739 "mitochondrion" evidence=IBA]
[GO:0005694 "chromosome" evidence=IBA] [GO:0005634 "nucleus"
evidence=IBA] [GO:0003910 "DNA ligase (ATP) activity" evidence=IBA]
[GO:0042542 "response to hydrogen peroxide" evidence=IEA]
[GO:0006303 "double-strand break repair via nonhomologous end
joining" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0051103
"DNA ligation involved in DNA repair" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005739 GO:GO:0005524
GO:GO:0005634 GO:GO:0005694 GO:GO:0003677 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006273
eggNOG:COG1793 HOGENOM:HOG000036006 KO:K10747 OMA:AQVACLY
GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 GeneTree:ENSGT00700000104556 CTD:3978
HOVERGEN:HBG005514 EMBL:DAAA02047435 EMBL:BC134518 IPI:IPI00686777
RefSeq:NP_001096018.1 UniGene:Bt.12876 SMR:A4IFC8 STRING:A4IFC8
Ensembl:ENSBTAT00000031920 GeneID:100124507 KEGG:bta:100124507
NextBio:20788728 Uniprot:A4IFC8
Length = 916
Score = 1418 (504.2 bits), Expect = 8.6e-147, Sum P(2) = 8.6e-147
Identities = 293/654 (44%), Positives = 417/654 (63%)
Query: 94 TQTPKTTNSVVGEKIQEVAEEPSND-LVKPISNQIDNPIDSEKESQPTPPSPKKRKVNVN 152
T T T SV E V +EP D +P P P P+ KK +
Sbjct: 190 TSTESLTESV-SEPGVTVKQEPQEDGQAQPPPK---TPKTLSSFFSPRKPAVKK-EAKEE 244
Query: 153 SVSAKEKIAELKSNI--VLLKKKAGEFDPKMVACWEKGERVPFIFLSLVFDMISNETGRI 210
A K E+K ++ + P ACW+ G+RVP++ ++ F+ I + R+
Sbjct: 245 GPGALRK-DEIKGHVDPASYNPAKNNYHPIEDACWKAGQRVPYLAVARAFEKIEEVSARL 303
Query: 211 LITDIVCNMLRTVMETTPEDLVPVVYLAANKIAPAHEGLELGIGDASIIKALAEACGRTE 270
+ + + N+LR+V+ +P DL+PV+YL+ N++ P +GLELGIG+ ++KA+A+A GR
Sbjct: 304 RMVETLSNLLRSVVALSPADLLPVLYLSLNRLGPPQQGLELGIGEGILLKAVAQATGRQL 363
Query: 271 SHVKKQYQEMGDLGLVAKASRSSQSMMRKPDPLTITKVFDTFRLIAKEAGKDSQEKKKNR 330
V+ + E GD+GLVA++SRS+Q ++ P LT VF FR IA+ AG S KK +
Sbjct: 364 ESVRAEVAEKGDVGLVAESSRSTQRLVLPPPALTAAGVFAKFRDIAQLAGSASTTKKIDV 423
Query: 331 IKALLVAATDCEPQYLIRLLQSKLRIGLAEQTLLAALGQAAVYNEQHSKPPPNI------ 384
IK L VA E +++ R L +LR+GLAEQ++LAAL QA + PP +
Sbjct: 424 IKGLFVACRHSEARFIARALSGRLRLGLAEQSVLAALAQAVSLTPPSQECPPAVVDAGKG 483
Query: 385 ------QSPLEEAAKIVKQVFSVLPVYEKIVPALLTDGVWNLSNTCSFTPGIPIGPMLAK 438
++ LEE I+KQ F +P E+IVP LL G+ L C +PG+P+ PMLA
Sbjct: 484 KTAEARKTWLEEQGMILKQTFCEVPDLERIVPVLLEHGLERLPEHCRLSPGVPLKPMLAH 543
Query: 439 PTKGVSEIVNKFQDMEFTCEYKYDGERAQIHYLEDGSVEIYSRNAERNTGKFPDVVLAVS 498
PT+GVSE++ +F++ FTCEYKYDG+RAQIH LE G V+I+SRN E NTG++PD++ +
Sbjct: 544 PTRGVSEVLKRFEEAAFTCEYKYDGQRAQIHVLEGGEVKIFSRNQEDNTGRYPDIISRIP 603
Query: 499 RLKKPSVRSFVLDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIKVDVCIYAFDILYRN 558
++K PSV SF+LD E VA+DREK++I PFQ L+TR RK V ++I+V VC+YAFD++Y N
Sbjct: 604 KIKLPSVTSFILDTEAVAWDREKKQIQPFQVLTTRKRKEVDAAEIQVQVCLYAFDLIYLN 663
Query: 559 GQPLLQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKT 618
G+ L++E L RR+ L ++F E G F FAT+L + D ++I +FL+ +V SCEGL++KT
Sbjct: 664 GKSLVREPLSRRRQLLRENFVETEGEFVFATSLDTKDTEQIAEFLEQSVKDSCEGLMVKT 723
Query: 619 MDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSN 678
+D DATYE +KRS NWLKLKKDY+E +GD+LDLV I A+ G+GKR G YG FLLA YD
Sbjct: 724 LDVDATYEIAKRSHNWLKLKKDYLEGVGDTLDLVVIGAYLGKGKRAGRYGGFLLASYDEE 783
Query: 679 NEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTE 732
+EEFQ+ICK+GTGFS+ LEE L++ V+P PR Y R ++PD W +P++
Sbjct: 784 SEEFQAICKLGTGFSDEELEEHHQRLQALVLPTPRSYVRADGAVAPDHWLDPSD 837
Score = 37 (18.1 bits), Expect = 8.6e-147, Sum P(2) = 8.6e-147
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 132 DSEKESQPTPPSPKKRKVNVNSVSA 156
+ E+E + P +P+ +K +S A
Sbjct: 67 EGEEEEEEAPTTPRSQKPASDSPQA 91
>UNIPROTKB|A8JH25 [details] [associations]
symbol:LIG1 "DNA ligase" species:3055 "Chlamydomonas
reinhardtii" [GO:0003910 "DNA ligase (ATP) activity" evidence=IBA]
[GO:0005634 "nucleus" evidence=IBA] [GO:0005694 "chromosome"
evidence=IBA] [GO:0005739 "mitochondrion" evidence=IBA] [GO:0006266
"DNA ligation" evidence=IBA] [GO:0006273 "lagging strand
elongation" evidence=IBA] [GO:0006289 "nucleotide-excision repair"
evidence=IBA] InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005739 GO:GO:0005524
GO:GO:0005634 GO:GO:0005694 GO:GO:0003677 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006289
GO:GO:0006273 eggNOG:COG1793 KO:K10747 GO:GO:0003910 GO:GO:0051103
Gene3D:1.10.3260.10 SUPFAM:SSF117018 TIGRFAMs:TIGR00574
EMBL:DS496188 RefSeq:XP_001702891.1 UniGene:Cre.3193
ProteinModelPortal:A8JH25 STRING:A8JH25 EnsemblPlants:EDO96848
GeneID:5728431 KEGG:cre:CHLREDRAFT_133143 ProtClustDB:CLSN2924027
BioCyc:CHLAMY:CHLREDRAFT_133143-MONOMER Uniprot:A8JH25
Length = 813
Score = 1432 (509.1 bits), Expect = 1.3e-146, P = 1.3e-146
Identities = 283/562 (50%), Positives = 385/562 (68%)
Query: 173 KAGEFDPKMVACWEKGERVPFIFLSLVFDMISNETGRILITDIVCNMLRTVMETTPEDLV 232
K E D V W++G+ VP+ L+ F+ I+ T R+ I ++ + R ++ T P DL+
Sbjct: 179 KYKEQDISAVISWKEGQPVPYSLLANTFEAIAGTTKRLEIVALLVSAFRAILATNPPDLL 238
Query: 233 PVVYLAANKIAPAHEGLELGIGDASIIKALAEACGRTESHVKKQYQEMGDLGLVAKASRS 292
P VYL N++APAH G+ELGIG+A++IKA+ EA G+ E+ +KK Y+E GDLG+V +RS
Sbjct: 239 PAVYLCVNRVAPAHTGIELGIGEATLIKAMCEATGKNEASIKKSYEEHGDLGVVVVGARS 298
Query: 293 SQSMMRKPDPLTITKVFDTFRLIAKEAGKDSQEKKKNRIKALLVAATDCEPQYLIRLLQS 352
+Q M P PLTI V F+ IA+ G S ++K+ I LLVAA EP Y++R LQ+
Sbjct: 299 TQRTMFAPPPLTIASVLKAFQNIAQTTGTKSGDQKRGMIVKLLVAAKGNEPGYIVRSLQA 358
Query: 353 KLRIGLAEQTLLAALGQAAVYNEQH----SKPPPNIQSPLEEAAKIVKQVFSVLPVYEKI 408
KLRIGLAEQ++L AL A + +P + LE A++VKQ +S P Y+ +
Sbjct: 359 KLRIGLAEQSVLVALSHAVHLHRGGPAALKQPDVKLAEALEAGAQVVKQAYSECPSYDVL 418
Query: 409 VPALLTDGVWNLSNTCSFTPGIPIGPMLAKPTKGVSEIVNKFQDMEFTCEYKYDGERAQI 468
VPALL G +L + C F PG+P+ PMLAK T GV E++ KF D+EFT EYKYDGERAQ+
Sbjct: 419 VPALLEHGSTDLLSRCHFMPGVPVKPMLAKATNGVGEVLEKFTDIEFTVEYKYDGERAQV 478
Query: 469 HYLEDG-SVEIYSRNAERNTGKFPDVVLAVSRLKKPSVRSFVLDCEIVAYDREKQKILPF 527
H L+ G +V I+SRNAE NT K+PD+V + L KP V S V D E VAYD EK+KILPF
Sbjct: 479 HVLDGGKTVHIFSRNAENNTPKYPDIVSRIKGLLKPEVDSIVFDAEAVAYDPEKKKILPF 538
Query: 528 QTLSTRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFFQF 587
Q LSTRARK+V++ DIKV V ++AFD LY NGQ LL + L RR LY S E+ G +
Sbjct: 539 QVLSTRARKDVAVDDIKVQVVLFAFDCLYLNGQSLLHKPLTERRAALYGSLTEKEGELLY 598
Query: 588 ATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGD 647
A+ TS D++E++ FL+ +V+A EGLI+KT+ D TYEPSKRS +WLKLKKDY+E +GD
Sbjct: 599 ASYKTSRDVEELESFLNESVEAGTEGLIVKTLG-D-TYEPSKRSSHWLKLKKDYMEGVGD 656
Query: 648 SLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSK 707
+ D+VP+ AF G+GKRTGV+GA+LLA YD + E +Q+I K+GTGFSE L + + ++R
Sbjct: 657 TFDVVPVGAFFGKGKRTGVFGAYLLAVYDPDTETYQTISKLGTGFSEEQLSQLAEAMRPH 716
Query: 708 VIPKPRPYYRFADTISPDVWFE 729
IP+PR YY + +++ PDVWF+
Sbjct: 717 TIPQPRHYYTWDESLVPDVWFD 738
>RGD|621424 [details] [associations]
symbol:Lig1 "ligase I, DNA, ATP-dependent" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003909
"DNA ligase activity" evidence=ISO;IDA] [GO:0003910 "DNA ligase
(ATP) activity" evidence=IBA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005694
"chromosome" evidence=IBA] [GO:0005739 "mitochondrion"
evidence=IBA] [GO:0006260 "DNA replication" evidence=ISO]
[GO:0006273 "lagging strand elongation" evidence=IBA] [GO:0006281
"DNA repair" evidence=ISO;IDA] [GO:0006289 "nucleotide-excision
repair" evidence=IBA] [GO:0006303 "double-strand break repair via
nonhomologous end joining" evidence=ISO] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA]
[GO:0042542 "response to hydrogen peroxide" evidence=ISO]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0051103 "DNA
ligation involved in DNA repair" evidence=IEA] [GO:0051301 "cell
division" evidence=IEA] [GO:0033151 "V(D)J recombination"
evidence=ISO] InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 RGD:621424 GO:GO:0005739
GO:GO:0005524 GO:GO:0005634 GO:GO:0005694 GO:GO:0051301
GO:GO:0046872 GO:GO:0003677 GO:GO:0006281 GO:GO:0007049
GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0006273 eggNOG:COG1793 HOGENOM:HOG000036006 GO:GO:0003910
GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 HOVERGEN:HBG005514 OrthoDB:EOG4RBQJ6
EMBL:AF276774 IPI:IPI00200072 UniGene:Rn.20467
ProteinModelPortal:Q9JHY8 SMR:Q9JHY8 STRING:Q9JHY8
PhosphoSite:Q9JHY8 PRIDE:Q9JHY8 UCSC:RGD:621424 InParanoid:Q9JHY8
NextBio:614997 ArrayExpress:Q9JHY8 Genevestigator:Q9JHY8
GermOnline:ENSRNOG00000014193 Uniprot:Q9JHY8
Length = 918
Score = 1374 (488.7 bits), Expect = 1.4e-144, Sum P(2) = 1.4e-144
Identities = 263/567 (46%), Positives = 386/567 (68%)
Query: 177 FDPKMVACWEKGERVPFIFLSLVFDMISNETGRILITDIVCNMLRTVMETTPEDLVPVVY 236
+ P ACW+ G++VPF+ ++ F+ I + R+ + + + N+LR+V+ +P DL+PV+Y
Sbjct: 273 YHPIEDACWKHGQKVPFLAVARTFEKIEEVSARLKMVETLSNLLRSVVALSPTDLLPVLY 332
Query: 237 LAANKIAPAHEGLELGIGDASIIKALAEACGRTESHVKKQYQEMGDLGLVAKASRSSQSM 296
L+ N++ P +GLELG+GD ++KA+A+A GR ++ + E GD+GLVA+ SRS+Q +
Sbjct: 333 LSLNRLGPPQQGLELGVGDGVLLKAVAQATGRQLESIRAEVAEKGDVGLVAENSRSTQRL 392
Query: 297 MRKPDPLTITKVFDTFRLIAKEAGKDSQEKKKNRIKALLVAATDCEPQYLIRLLQSKLRI 356
M PLT++ VF F IA+ G S KK + IK L VA E +++ R L +LR+
Sbjct: 393 MLPSPPLTVSGVFTKFCDIARLTGSASMAKKMDIIKGLFVACRYSEARFIARSLSGRLRL 452
Query: 357 GLAEQTLLAALGQAAVYNEQHSKPPPNIQSP------------LEEAAKIVKQVFSVLPV 404
GLAEQ++LAAL QA + P + LEE I+KQ F +P
Sbjct: 453 GLAEQSVLAALAQAGSLTPPGQEFPTVVVDAGKGKTAEARKMWLEEQGMILKQTFCEVPD 512
Query: 405 YEKIVPALLTDGVWNLSNTCSFTPGIPIGPMLAKPTKGVSEIVNKFQDMEFTCEYKYDGE 464
++I+P LL G+ +L C +PG+P+ PMLA PT+GV E++ +F++++FTCEYKY G+
Sbjct: 513 LDRIIPVLLEHGLESLPEHCKLSPGVPLKPMLAHPTRGVREVLKRFEEVDFTCEYKYYGQ 572
Query: 465 RAQIHYLEDGSVEIYSRNAERNTGKFPDVVLAVSRLKKPSVRSFVLDCEIVAYDREKQKI 524
RAQIH LE G V+I+SRN E N+GK+PD++ + ++K PSV SF+LD E VA+DREK++I
Sbjct: 573 RAQIHVLEGGEVKIFSRNQEDNSGKYPDIISRIPKIKHPSVTSFILDTEAVAWDREKKQI 632
Query: 525 LPFQTLSTRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGF 584
PFQ L+TR RK V S+I+V VC+YAFD++Y NG+ L ++ L RR+ L ++F E G
Sbjct: 633 QPFQVLTTRKRKEVDASEIQVQVCLYAFDLIYLNGESLARQPLSRRRQLLRENFVETEGE 692
Query: 585 FQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIES 644
F FAT+L + D+++I +FL+ +V SCEGL++KT+D DATYE +KRS NWLKLKKDY+E
Sbjct: 693 FVFATSLDTKDIEQIAEFLEQSVKDSCEGLMVKTLDVDATYEIAKRSHNWLKLKKDYLEG 752
Query: 645 IGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSL 704
+GD+LDLV I A+ GRGKR G YG FLLA YD +EE +ICK+GTGFS+ LEE ++
Sbjct: 753 VGDTLDLVVIGAYLGRGKRPGRYGGFLLAAYDEESEELAAICKLGTGFSDEELEEHHQNM 812
Query: 705 RSKVIPKPRPYYRFADTISPDVWFEPT 731
++ ++P PRPY R ++P+ W +P+
Sbjct: 813 QALLLPTPRPYVRIDGAVAPNHWLDPS 839
Score = 60 (26.2 bits), Expect = 1.4e-144, Sum P(2) = 1.4e-144
Identities = 21/64 (32%), Positives = 26/64 (40%)
Query: 89 RRTLDTQTPKTTNSVVGEKIQEVAEEPSNDLVKPISNQIDNPIDSEKESQPTPPSPKKRK 148
RRT Q PK T IQ+ EEP+ D K + + +KE TPP
Sbjct: 122 RRTARKQLPKRT-------IQDTLEEPNEDKAKAVKKR-------KKEDPQTPPESLTEA 167
Query: 149 VNVN 152
VN
Sbjct: 168 EEVN 171
Score = 56 (24.8 bits), Expect = 3.8e-144, Sum P(2) = 3.8e-144
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 105 GEKIQEV-AEEPSNDLVKPISNQIDNPIDSEKESQPTPPSP 144
G K+ +V + E ++ P + Q+ P+ K+S +PPSP
Sbjct: 58 GRKVAQVLSSEGEDEDEAPGTPQVQKPVSDSKQS--SPPSP 96
Score = 40 (19.1 bits), Expect = 1.8e-142, Sum P(2) = 1.8e-142
Identities = 17/60 (28%), Positives = 27/60 (45%)
Query: 112 AEEPSNDLVKPISNQIDNPIDSE--KESQPTPPSPKKRKVN-VNSVSAKEKIAELKSNIV 168
A +P+N P + +PI+ K Q P R + VSA+ K+ E SN++
Sbjct: 260 APDPTN--YNPSKSNY-HPIEDACWKHGQKVPFLAVARTFEKIEEVSARLKMVETLSNLL 316
>UNIPROTKB|E2QTV4 [details] [associations]
symbol:LIG1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0051103 "DNA ligation involved in DNA repair"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003910 "DNA ligase (ATP) activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000977 InterPro:IPR012308 InterPro:IPR012309
InterPro:IPR012310 InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0003910
GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 Ensembl:ENSCAFT00000006495 Uniprot:E2QTV4
Length = 919
Score = 1400 (497.9 bits), Expect = 3.3e-143, P = 3.3e-143
Identities = 288/658 (43%), Positives = 414/658 (62%)
Query: 89 RRTLDTQTPKTTNSVVGEKIQEVAEEPSNDLVKPISNQIDNPIDSEKESQPTPPSPKKR- 147
R T + P +S + + E + DL KP + P P P+ KK
Sbjct: 188 RETSPAEPP--VDSTLEPAVSGKQEAQNEDLAKPPTRA---PKTVSSFFAPRKPATKKEG 242
Query: 148 KVNVNSVSAKEKIAELKSNIVLLKKKAGEFDPKMVACWEKGERVPFIFLSLVFDMISNET 207
K +E+ + + P ACW+ G++VP++ ++ F+ I +
Sbjct: 243 KEEDPGTPRQEETKGTPLDPPSYNPAKNNYHPIDDACWKPGQKVPYLAVARTFEKIEEVS 302
Query: 208 GRILITDIVCNMLRTVMETTPEDLVPVVYLAANKIAPAHEGLELGIGDASIIKALAEAC- 266
R+ + + + N+LR+V+ +P DL+P++YL+ N++ P +GLELG+GD ++KA+A+A
Sbjct: 303 ARLRMVETLSNLLRSVVALSPPDLLPILYLSLNRLGPPQQGLELGVGDGVLLKAVAQATA 362
Query: 267 -GRTESHVKKQYQEMGDLGLVAKASRSSQSMMRKPDPLTITKVFDTFRLIAKEAGKDSQE 325
GR VK + E GD+GLVA+ SRS+Q +M P LT VF FR IA+ AG S
Sbjct: 363 QGRQLDSVKAEAAEKGDVGLVAENSRSTQRLMLPPPALTAAGVFAKFRDIARLAGSASTA 422
Query: 326 KKKNRIKALLVAATDCEPQYLIRLLQSKLRIGLAEQTLLAALGQAAVYNEQHSKPPPNI- 384
KK + IK L VA E +++ R L +LR+GLAEQ++LAAL QA + PP +
Sbjct: 423 KKIDVIKGLFVACRHSEARFIARALSGRLRLGLAEQSVLAALAQAVSLTPPGQEFPPAVV 482
Query: 385 -----------QSPLEEAAKIVKQVFSVLPVYEKIVPALLTDGVWNLSNTCSFTPGIPIG 433
++ LEE I+KQ F +P ++I+P LL G+ +L C +PG+P+
Sbjct: 483 DAGKGRTAEARKTWLEEQGMILKQTFCEVPDLDRIIPVLLEHGLEHLPEHCRLSPGVPLK 542
Query: 434 PMLAKPTKGVSEIVNKFQDMEFTCEYKYDGERAQIHYLEDGSVEIYSRNAERNTGKFPDV 493
PMLA PT+GVSE++ +F++ FTCEYKYDG+RAQIH LE G V+I+SRN E NTGK+PD+
Sbjct: 543 PMLAHPTRGVSEVLKRFEEAAFTCEYKYDGQRAQIHVLEGGEVKIFSRNQEDNTGKYPDI 602
Query: 494 VLAVSRLKKPSVRSFVLDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIKVDVCIYAFD 553
+ + ++K PSV SF+LD E VA+DREK++I PFQ L+TR RK V ++I+V VC+YAFD
Sbjct: 603 ISRIPKIKLPSVTSFILDTEAVAWDREKKQIQPFQVLTTRKRKEVDAAEIQVQVCLYAFD 662
Query: 554 ILYRNGQPLLQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEG 613
++Y NG+ L++E L RR+ L ++F E G F FAT+L + D D+I +FL+ +V SCEG
Sbjct: 663 LIYLNGESLVREPLSRRRQLLRENFVETEGEFVFATSLDTKDTDQIAEFLEQSVKDSCEG 722
Query: 614 LIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLA 673
L++KT+D DATYE +KRS NWLKLKKDY++ +GD+LDLV I A+ GRGKR G YG FLLA
Sbjct: 723 LMVKTLDVDATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRAGRYGGFLLA 782
Query: 674 CYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPT 731
YD +EE Q+ICK+GTGFS+ LEE L++ V+P PR Y R ++PD W +P+
Sbjct: 783 AYDEESEELQAICKLGTGFSDEELEEHYQRLQALVLPTPRSYVRVDGAVAPDHWLDPS 840
>UNIPROTKB|Q75CS4 [details] [associations]
symbol:ACL155W "DNA ligase" species:284811 "Ashbya gossypii
ATCC 10895" [GO:0003910 "DNA ligase (ATP) activity" evidence=IBA]
[GO:0005634 "nucleus" evidence=IBA] [GO:0005694 "chromosome"
evidence=IBA] [GO:0005739 "mitochondrion" evidence=IBA] [GO:0006266
"DNA ligation" evidence=IBA] [GO:0006273 "lagging strand
elongation" evidence=IBA] [GO:0006289 "nucleotide-excision repair"
evidence=IBA] InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005739 GO:GO:0005524
GO:GO:0005634 GO:GO:0005694 GO:GO:0006284 GO:GO:0003677
GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0006289 GO:GO:0000278 EMBL:AE016816 GenomeReviews:AE016816_GR
GO:GO:0006273 HOGENOM:HOG000036006 KO:K10747 OMA:AQVACLY
GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 OrthoDB:EOG4RV60K RefSeq:NP_983249.1
ProteinModelPortal:Q75CS4 STRING:Q75CS4 EnsemblFungi:AAS51073
GeneID:4619369 KEGG:ago:AGOS_ACL155W PhylomeDB:Q75CS4
Uniprot:Q75CS4
Length = 697
Score = 1392 (495.1 bits), Expect = 2.3e-142, P = 2.3e-142
Identities = 273/559 (48%), Positives = 375/559 (67%)
Query: 191 VPFIFLSLVFDMISNETGRILITDIVCNMLRTVMETTPEDLVPVVYLAANKIAPAHE-GL 249
V + L VF+ + + R+ IT + + + +V++ P L+PV YL N++ P +E GL
Sbjct: 93 VMYADLCAVFEAVEATSSRLSITKLCADFMYSVLKCDPGHLIPVTYLFINRLGPDYEPGL 152
Query: 250 ELGIGDASIIKALAEACGRTESHVKKQYQEMGDLGLVAKASRSSQSMMRKPDPLTITKVF 309
ELG+G+ +IK +++ACG++ + V+ Y+E GDLG VA+ +R Q M KP PLT+ VF
Sbjct: 153 ELGLGEGILIKTISDACGKSAAQVRSSYRECGDLGTVAQQARVVQPTMFKPKPLTVRDVF 212
Query: 310 DTFRLIAKEAGKDSQEKKKNRIKALLVAATDCEPQYLIRLLQSKLRIGLAEQTLLAALGQ 369
T + IA+ GKDSQ KK IK +L A E +YLIR L+SKLRIGLAE+T+L AL +
Sbjct: 213 STLQAIAQAEGKDSQGKKIRLIKKMLTACQGMEAKYLIRSLESKLRIGLAEKTVLVALSK 272
Query: 370 AAVYNEQHSKPPPNIQSPLEEAAKIVKQVFSVLPVYEKIVPALLTDGVWNLSNTCSFTPG 429
A + +E K P Q EA +V+ F +P YE I+ A L G+ NL C TPG
Sbjct: 273 AILTHEHDGKEPSPEQVDAAEA--LVRDTFCQVPNYEMIINAALQYGIMNLPQHCVLTPG 330
Query: 430 IPIGPMLAKPTKGVSEIVNKFQDMEFTCEYKYDGERAQIHYLEDGSVEIYSRNAERNTGK 489
IP+ PMLAKPTK ++E++++FQ FTCEYKYDGERAQ+H +EDG++ IYSRN+E T +
Sbjct: 331 IPLKPMLAKPTKSITEVLDRFQGQRFTCEYKYDGERAQVHLMEDGTIRIYSRNSENMTER 390
Query: 490 FPDVVLAVSRLKKPSVRSFVLDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIKVDVCI 549
+P++ + RS ++DCE VA+D EKQKILPFQ LSTR RK V L D+KV VC+
Sbjct: 391 YPEIQFHQFLANPQTTRSLIIDCEAVAWDNEKQKILPFQVLSTRKRKGVELKDVKVRVCL 450
Query: 550 YAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDA 609
+AFD+LY NG+ LL+ L RR+HLY + PG QFA +T+++L E+Q +L+ +V A
Sbjct: 451 FAFDLLYLNGESLLKCSLADRRKHLYSVLKVVPGELQFANEITTMELSELQTYLEQSVSA 510
Query: 610 SCEGLIIKTMD-RDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYG 668
SCEGL++K +D ++ YEPSKRS NWLKLKKDY+E +GDSLDL + A++GRGKRTG YG
Sbjct: 511 SCEGLMVKMLDGEESQYEPSKRSRNWLKLKKDYLEGVGDSLDLAVLGAYYGRGKRTGTYG 570
Query: 669 AFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWF 728
FLL CY+ + EEF++ CKIGTGFSE +L+ + L+ VI PR + D+ PDVWF
Sbjct: 571 GFLLGCYNPDLEEFETCCKIGTGFSEEVLQSLHAQLKDTVIAAPRGDVSYDDSSPPDVWF 630
Query: 729 EPTERPE--TSNSPASIVY 745
EP E T++ S VY
Sbjct: 631 EPAMLFEVLTADLSLSPVY 649
>UNIPROTKB|G4N7T1 [details] [associations]
symbol:MGG_06370 "DNA ligase" species:242507 "Magnaporthe
oryzae 70-15" [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000977 InterPro:IPR012308 InterPro:IPR012309
InterPro:IPR012310 InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 EMBL:CM001234
KO:K10747 GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10
SUPFAM:SSF117018 TIGRFAMs:TIGR00574 RefSeq:XP_003717204.1
EnsemblFungi:MGG_06370T0 GeneID:2684525 KEGG:mgr:MGG_06370
Uniprot:G4N7T1
Length = 896
Score = 734 (263.4 bits), Expect = 3.5e-141, Sum P(3) = 3.5e-141
Identities = 135/260 (51%), Positives = 192/260 (73%)
Query: 474 GSVEIYSRNAERNTGKFPDVVLAVSRLKKPSVRSFVLDCEIVAYDREKQKILPFQTLSTR 533
G I+SRN+E + K+PD++ + KP +SFVLDCE VA+D +++K+LPFQ L TR
Sbjct: 555 GLAAIFSRNSEDLSQKYPDILAKLDSWVKPETKSFVLDCETVAWDVQEKKVLPFQQLMTR 614
Query: 534 ARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFFQFATTLTS 593
+K+V + D+KV VC++AFD+LY NG+ ++++ LR RR L SF+ G F +AT +
Sbjct: 615 KKKDVKIEDVKVKVCVFAFDLLYLNGEAVVEKSLRERRTLLESSFKPIEGEFAYATHMNG 674
Query: 594 IDLDEIQKFLDAAVDASCEGLIIKTMD-RDATYEPSKRSLNWLKLKKDYIESIGDSLDLV 652
+LDEIQ FLD +V ASCEGL++K +D ++ YEPSKRS NWLK+KKDY+ IGDSLDLV
Sbjct: 675 QELDEIQTFLDESVKASCEGLMVKMLDGTESGYEPSKRSRNWLKIKKDYLSGIGDSLDLV 734
Query: 653 PIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKP 712
+ A++G+GKRT VYGAFLLACY+ ++++++++C IGTGFSEA+LEE + L+ VI +P
Sbjct: 735 VLGAYYGKGKRTSVYGAFLLACYNPSSDKYETVCNIGTGFSEAVLEELHTQLKDTVIDRP 794
Query: 713 RPYYRFAD--TISPDVWFEP 730
+P+Y + PDVWFEP
Sbjct: 795 KPFYSHSSGGQHQPDVWFEP 814
Score = 643 (231.4 bits), Expect = 3.5e-141, Sum P(3) = 3.5e-141
Identities = 135/302 (44%), Positives = 194/302 (64%)
Query: 185 WEKGERVPFIFLSLVFDMISNETGRILITDIVCNMLRTVMETTPEDLVPVVYLAANKIAP 244
W+ GE VP+ L F ++ T R++I + LR V++ TPEDL+P V L NK+A
Sbjct: 232 WKPGEPVPYAALCTTFSLVELTTKRLIIIEHCSRFLRQVLKLTPEDLLPTVLLMINKLAA 291
Query: 245 AHEGLELGIGDASIIKALAEACGRTESHVKKQYQEMGDLGLVAKASRSSQSMMRKPDPLT 304
+ G+ELGIG++ I+KA+ E+ GR+ + +K+ +E+GDLGLVA SRS+Q M KP PLT
Sbjct: 292 DYAGIELGIGESLIMKAIGESTGRSLAIIKQDQREIGDLGLVAVKSRSTQPTMFKPKPLT 351
Query: 305 ITKVFDTFRLIAKEAGKDSQEKKKNRIKALLVAA-------TDC--------EPQYLIRL 349
+ VF IA G +Q +K + IK LL AA D E ++++R
Sbjct: 352 VRGVFAGLTNIATITGNGAQGRKVDIIKKLLSAADVNNAGKVDISKDKGGPSEAKFIVRF 411
Query: 350 LQSKLRIGLAEQTLLAALGQAAVYNEQHSKPPPNIQSPLEEAAKIVKQVFSVLPVYEKIV 409
L+ KLR+GLAE+T+L +L QA + +E K S +E+A +++K V+S LP YE I+
Sbjct: 412 LEGKLRLGLAERTVLPSLAQAVIAHESSKKGTIPSTSDVEKAEQMLKTVYSELPSYEVII 471
Query: 410 PALLTDGVWNLSNTCSFTPGIPIGPMLAKPTKGVSEIVNKFQDMEFTCEYKYDGERAQIH 469
PALL G+ NL + C PGIP+ PMLAKPTK ++E++++F++ FTCEYKYDGERAQIH
Sbjct: 472 PALLEHGIMNLKDNCKLRPGIPLKPMLAKPTKAITEVLDRFENQTFTCEYKYDGERAQIH 531
Query: 470 YL 471
Y+
Sbjct: 532 YV 533
Score = 40 (19.1 bits), Expect = 3.5e-141, Sum P(3) = 3.5e-141
Identities = 11/30 (36%), Positives = 12/30 (40%)
Query: 135 KESQPTPPSPKKRKVNVNSVSAKEKIAELK 164
K SQP P K +KEK E K
Sbjct: 14 KGSQPAPTQQTKLSFATKPTPSKEKEKEEK 43
>ASPGD|ASPL0000001880 [details] [associations]
symbol:AN6069 species:162425 "Emericella nidulans"
[GO:0033567 "DNA replication, Okazaki fragment processing"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0000723
"telomere maintenance" evidence=IEA] [GO:0007090 "regulation of S
phase of mitotic cell cycle" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0051103
"DNA ligation involved in DNA repair" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0003910 "DNA ligase (ATP) activity" evidence=IEA]
InterPro:IPR000977 InterPro:IPR012308 InterPro:IPR012309
InterPro:IPR012310 InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:BN001301
GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
HOGENOM:HOG000036006 GO:GO:0003910 GO:GO:0051103
Gene3D:1.10.3260.10 SUPFAM:SSF117018 TIGRFAMs:TIGR00574
EnsemblFungi:CADANIAT00006948 OMA:ETICNIG Uniprot:C8V2T3
Length = 932
Score = 730 (262.0 bits), Expect = 4.4e-141, Sum P(3) = 4.4e-141
Identities = 144/275 (52%), Positives = 199/275 (72%)
Query: 461 YDGERAQIHYLEDGSVE-IYSRNAERNTGKFPDVVLAVSRLKKPSVRSFVLDCEIVAYDR 519
Y G AQ+ E + I+SRN+E + K+PDV+ +S KP V+SFVLDCE VA+D
Sbjct: 575 YPG--AQLTLKESAGLSAIFSRNSEDLSKKYPDVLAKLSTWIKPGVKSFVLDCETVAWDV 632
Query: 520 EKQKILPFQTLSTRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFE 579
E +K+LPFQ L TR RK+V D+KV VC++AFD+L+ NG+P +++ LR RR+ L+ SF+
Sbjct: 633 EAKKVLPFQQLMTRKRKDVKAEDVKVKVCVFAFDLLFLNGEPTVKKPLRQRRDLLHSSFQ 692
Query: 580 EEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDAT-YEPSKRSLNWLKLK 638
G FQFA + DL++IQ LD +V ASCEGL++K +D + + YEPSKRS NWLK+K
Sbjct: 693 PIEGEFQFAQYGNTNDLEQIQTLLDDSVKASCEGLMVKMLDTEESGYEPSKRSRNWLKVK 752
Query: 639 KDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLE 698
KDY+ +GDSLDL+ + A++GRGKRT VYGAFLLA Y+SN++ +++IC IGTGFSEAML+
Sbjct: 753 KDYLAGVGDSLDLLVLGAYYGRGKRTSVYGAFLLAAYNSNSQTYETICNIGTGFSEAMLD 812
Query: 699 ERSSSLRSKVIPKPRPYYRFADTI---SPDVWFEP 730
E ++L VI +P+P+Y + T+ PDVW EP
Sbjct: 813 ELHTTLSPLVIDRPKPFYSHS-TVPKDQPDVWLEP 846
Score = 366 (133.9 bits), Expect = 4.4e-141, Sum P(3) = 4.4e-141
Identities = 72/140 (51%), Positives = 96/140 (68%)
Query: 342 EPQYLIRLLQSKLRIGLAEQTLLAALGQAAVYNEQ--HSKPPPNIQSPLEEAAKIVKQVF 399
E +Y++R L+ KLR+GLAE+T+L AL QA V +E K P+ + L E I+K V+
Sbjct: 437 EAKYIVRFLEGKLRLGLAEKTVLVALAQAVVSHEAALKGKKAPSAEE-LAEGEAILKTVY 495
Query: 400 SVLPVYEKIVPALLTDGVWNLSNTCSFTPGIPIGPMLAKPTKGVSEIVNKFQDMEFTCEY 459
S LP YE I+PALL G+ NL C PGIPI PMLAKPTK ++E++++F+ +FTCEY
Sbjct: 496 SELPAYEVIIPALLEHGLSNLREHCKLQPGIPIKPMLAKPTKSITEVLDRFEGKDFTCEY 555
Query: 460 KYDGERAQIHYLEDGSVEIY 479
KYDGERAQIHY+ + Y
Sbjct: 556 KYDGERAQIHYVAPDETKNY 575
Score = 320 (117.7 bits), Expect = 4.4e-141, Sum P(3) = 4.4e-141
Identities = 87/245 (35%), Positives = 132/245 (53%)
Query: 95 QTPKTTNSVVGEKIQEVAEEPSNDLVKPISNQIDNPIDSE-KESQPTPPSPKKRKVNVNS 153
Q + S G K Q +EP+ ++V S + + P D + E++ S + + +
Sbjct: 180 QIDSSPESTKGRKSQ--VKEPTPEIVVKASGE-ETPEDPDVSEAEEEGLSASEDETDKKP 236
Query: 154 VSAKEKIAELKSNIVLLKKKAGEFDPKMVACWEKGERVPFIFLSLVFDMISNETGRILIT 213
K++I ++++ I K +G DP W+ GE VP+ L F +I T R+ I
Sbjct: 237 ELKKKEIEKVQATI----KGSGN-DP--YPDWQPGEPVPYAALCTTFSLIEMTTKRLQIL 289
Query: 214 DIVCNMLRTVMETTPEDLVPVVYLAANKIAPAHEGLELGIGDASIIKALAEACGRTESHV 273
LR V+ TP+D +P V L NK+A + G+ELGIG++ I+KA+ E+ GR+ + +
Sbjct: 290 AHCSLFLRQVLRLTPQDFLPTVQLMINKLAADYAGIELGIGESLIMKAIGESTGRSLAVI 349
Query: 274 KKQYQEMGDLGLVAKASRSSQSMMRKPDPLTITKVFDTFRLIAKEAGKDSQEKKKNRIKA 333
K E+GDLGLVA SRS+Q M KP LT+ V + IAK G +Q+KK + IK
Sbjct: 350 KADQHEIGDLGLVAAKSRSNQPTMFKPKALTVRGVHEGLLNIAKVQGHGAQDKKISGIKK 409
Query: 334 LLVAA 338
LL AA
Sbjct: 410 LLSAA 414
Score = 57 (25.1 bits), Expect = 2.2e-113, Sum P(3) = 2.2e-113
Identities = 17/71 (23%), Positives = 28/71 (39%)
Query: 122 PISNQIDNPIDSEKESQPTPPSPKKRKVNVNSVSAKEKIAELKSNIVLLKKKAGEFDPKM 181
P+ + ES+ PS K+R+ + AK +I + K + E P++
Sbjct: 143 PLKRDKSEDVSDSDESEKVQPSNKRRRKSSGKTPAKPQIDSSPESTKGRKSQVKEPTPEI 202
Query: 182 VACWEKGERVP 192
V GE P
Sbjct: 203 VVK-ASGEETP 212
Score = 44 (20.5 bits), Expect = 1.5e-79, Sum P(3) = 1.5e-79
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 247 EG-LELGIGDASIIKALAEACGRTESHVK 274
EG L LG+ + +++ ALA+A E+ +K
Sbjct: 446 EGKLRLGLAEKTVLVALAQAVVSHEAALK 474
>UNIPROTKB|Q5B061 [details] [associations]
symbol:AN6069.2 "DNA ligase" species:227321 "Aspergillus
nidulans FGSC A4" [GO:0003910 "DNA ligase (ATP) activity"
evidence=IBA] [GO:0005634 "nucleus" evidence=IBA] [GO:0005694
"chromosome" evidence=IBA] [GO:0005739 "mitochondrion"
evidence=IBA] [GO:0006266 "DNA ligation" evidence=IBA] [GO:0006273
"lagging strand elongation" evidence=IBA] [GO:0006289
"nucleotide-excision repair" evidence=IBA] InterPro:IPR000977
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679
PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005739
GO:GO:0005524 GO:GO:0005634 GO:GO:0005694 GO:GO:0003677
GO:GO:0006310 EMBL:AACD01000104 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006289 GO:GO:0006273
eggNOG:COG1793 KO:K10747 GO:GO:0003910 GO:GO:0051103
Gene3D:1.10.3260.10 SUPFAM:SSF117018 TIGRFAMs:TIGR00574
OrthoDB:EOG4RV60K RefSeq:XP_663673.1 ProteinModelPortal:Q5B061
STRING:Q5B061 GeneID:2871154 KEGG:ani:AN6069.2 Uniprot:Q5B061
Length = 886
Score = 730 (262.0 bits), Expect = 4.4e-141, Sum P(3) = 4.4e-141
Identities = 144/275 (52%), Positives = 199/275 (72%)
Query: 461 YDGERAQIHYLEDGSVE-IYSRNAERNTGKFPDVVLAVSRLKKPSVRSFVLDCEIVAYDR 519
Y G AQ+ E + I+SRN+E + K+PDV+ +S KP V+SFVLDCE VA+D
Sbjct: 529 YPG--AQLTLKESAGLSAIFSRNSEDLSKKYPDVLAKLSTWIKPGVKSFVLDCETVAWDV 586
Query: 520 EKQKILPFQTLSTRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFE 579
E +K+LPFQ L TR RK+V D+KV VC++AFD+L+ NG+P +++ LR RR+ L+ SF+
Sbjct: 587 EAKKVLPFQQLMTRKRKDVKAEDVKVKVCVFAFDLLFLNGEPTVKKPLRQRRDLLHSSFQ 646
Query: 580 EEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDAT-YEPSKRSLNWLKLK 638
G FQFA + DL++IQ LD +V ASCEGL++K +D + + YEPSKRS NWLK+K
Sbjct: 647 PIEGEFQFAQYGNTNDLEQIQTLLDDSVKASCEGLMVKMLDTEESGYEPSKRSRNWLKVK 706
Query: 639 KDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLE 698
KDY+ +GDSLDL+ + A++GRGKRT VYGAFLLA Y+SN++ +++IC IGTGFSEAML+
Sbjct: 707 KDYLAGVGDSLDLLVLGAYYGRGKRTSVYGAFLLAAYNSNSQTYETICNIGTGFSEAMLD 766
Query: 699 ERSSSLRSKVIPKPRPYYRFADTI---SPDVWFEP 730
E ++L VI +P+P+Y + T+ PDVW EP
Sbjct: 767 ELHTTLSPLVIDRPKPFYSHS-TVPKDQPDVWLEP 800
Score = 366 (133.9 bits), Expect = 4.4e-141, Sum P(3) = 4.4e-141
Identities = 72/140 (51%), Positives = 96/140 (68%)
Query: 342 EPQYLIRLLQSKLRIGLAEQTLLAALGQAAVYNEQ--HSKPPPNIQSPLEEAAKIVKQVF 399
E +Y++R L+ KLR+GLAE+T+L AL QA V +E K P+ + L E I+K V+
Sbjct: 391 EAKYIVRFLEGKLRLGLAEKTVLVALAQAVVSHEAALKGKKAPSAEE-LAEGEAILKTVY 449
Query: 400 SVLPVYEKIVPALLTDGVWNLSNTCSFTPGIPIGPMLAKPTKGVSEIVNKFQDMEFTCEY 459
S LP YE I+PALL G+ NL C PGIPI PMLAKPTK ++E++++F+ +FTCEY
Sbjct: 450 SELPAYEVIIPALLEHGLSNLREHCKLQPGIPIKPMLAKPTKSITEVLDRFEGKDFTCEY 509
Query: 460 KYDGERAQIHYLEDGSVEIY 479
KYDGERAQIHY+ + Y
Sbjct: 510 KYDGERAQIHYVAPDETKNY 529
Score = 320 (117.7 bits), Expect = 4.4e-141, Sum P(3) = 4.4e-141
Identities = 87/245 (35%), Positives = 132/245 (53%)
Query: 95 QTPKTTNSVVGEKIQEVAEEPSNDLVKPISNQIDNPIDSE-KESQPTPPSPKKRKVNVNS 153
Q + S G K Q +EP+ ++V S + + P D + E++ S + + +
Sbjct: 134 QIDSSPESTKGRKSQ--VKEPTPEIVVKASGE-ETPEDPDVSEAEEEGLSASEDETDKKP 190
Query: 154 VSAKEKIAELKSNIVLLKKKAGEFDPKMVACWEKGERVPFIFLSLVFDMISNETGRILIT 213
K++I ++++ I K +G DP W+ GE VP+ L F +I T R+ I
Sbjct: 191 ELKKKEIEKVQATI----KGSGN-DP--YPDWQPGEPVPYAALCTTFSLIEMTTKRLQIL 243
Query: 214 DIVCNMLRTVMETTPEDLVPVVYLAANKIAPAHEGLELGIGDASIIKALAEACGRTESHV 273
LR V+ TP+D +P V L NK+A + G+ELGIG++ I+KA+ E+ GR+ + +
Sbjct: 244 AHCSLFLRQVLRLTPQDFLPTVQLMINKLAADYAGIELGIGESLIMKAIGESTGRSLAVI 303
Query: 274 KKQYQEMGDLGLVAKASRSSQSMMRKPDPLTITKVFDTFRLIAKEAGKDSQEKKKNRIKA 333
K E+GDLGLVA SRS+Q M KP LT+ V + IAK G +Q+KK + IK
Sbjct: 304 KADQHEIGDLGLVAAKSRSNQPTMFKPKALTVRGVHEGLLNIAKVQGHGAQDKKISGIKK 363
Query: 334 LLVAA 338
LL AA
Sbjct: 364 LLSAA 368
Score = 57 (25.1 bits), Expect = 2.2e-113, Sum P(3) = 2.2e-113
Identities = 17/71 (23%), Positives = 28/71 (39%)
Query: 122 PISNQIDNPIDSEKESQPTPPSPKKRKVNVNSVSAKEKIAELKSNIVLLKKKAGEFDPKM 181
P+ + ES+ PS K+R+ + AK +I + K + E P++
Sbjct: 97 PLKRDKSEDVSDSDESEKVQPSNKRRRKSSGKTPAKPQIDSSPESTKGRKSQVKEPTPEI 156
Query: 182 VACWEKGERVP 192
V GE P
Sbjct: 157 VVK-ASGEETP 166
Score = 44 (20.5 bits), Expect = 1.5e-79, Sum P(3) = 1.5e-79
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 247 EG-LELGIGDASIIKALAEACGRTESHVK 274
EG L LG+ + +++ ALA+A E+ +K
Sbjct: 400 EGKLRLGLAEKTVLVALAQAVVSHEAALK 428
>UNIPROTKB|H9L3I6 [details] [associations]
symbol:LIG1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003910 "DNA
ligase (ATP) activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0051103 "DNA ligation involved in DNA repair" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0006303
"double-strand break repair via nonhomologous end joining"
evidence=IEA] [GO:0042542 "response to hydrogen peroxide"
evidence=IEA] InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 PROSITE:PS00333
PROSITE:PS50160 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
OMA:AQVACLY GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10
SUPFAM:SSF117018 TIGRFAMs:TIGR00574 GeneTree:ENSGT00700000104556
EMBL:AADN02065151 EMBL:AADN02065152 EMBL:AADN02065153
Ensembl:ENSGALT00000040526 Uniprot:H9L3I6
Length = 661
Score = 1367 (486.3 bits), Expect = 1.0e-139, P = 1.0e-139
Identities = 274/587 (46%), Positives = 383/587 (65%)
Query: 177 FDPKMVACWEKGERVPFIFLSLVFDMISNETGRILITDIVCNMLRTVMETTPEDLVPVVY 236
+ P ACW G VP++ ++ F+ I + R+ I +I+ N+LR+V+ +P +L+P +
Sbjct: 17 YHPVQDACWGHGRSVPYLAVARTFERIEEASSRLKIIEILTNLLRSVVALSPSELLPCLL 76
Query: 237 LAANKIAPAHEGLELGIGDASIIKALAEACGRTESHVKKQYQEMGDLGLVAKASRSSQSM 296
L N+ EGLELGIG+ + +ALA+A GR + ++ + Q+ GDLGLVA++SR +Q
Sbjct: 77 LCLNRPGAPSEGLELGIGETLLTRALAQATGRQLAQIRSEAQDKGDLGLVAESSRCTQRT 136
Query: 297 MRKPDPLTITKVFDTFRLIAKEAGKDSQEKKKNRIKALLVAATDCEPQYLIRLLQSKLRI 356
+ P PL+ + V R +A +G S KK + IK L VA E +YL+R L KLRI
Sbjct: 137 VVPPAPLSASGVLGKLREMAAMSGNASASKKIDIIKGLFVACRHSEARYLVRSLSGKLRI 196
Query: 357 GLAEQTLLAALGQA------------AVYNEQHSKPPPNIQSPLEEAAKIVKQVFSVLPV 404
GLAEQ++L AL A AV + S P ++ LEE ++I+KQ F LP
Sbjct: 197 GLAEQSVLTALAHAIALTPPGQEWPLAVVDAGQSMAPDARRTWLEEQSRILKQTFCELPD 256
Query: 405 YEKIVPALLTDGVWNLSNTCSFTPGIPIGPMLAKPTKGVSEIVNKFQDMEFTCEYKYDGE 464
Y IVP LL G+ L C TPG+P+ PMLA+P + VSE++ +F++ FTCEYKYDGE
Sbjct: 257 YAAIVPVLLEHGLEQLPKHCGITPGVPLKPMLAQPARCVSELLKRFEEAAFTCEYKYDGE 316
Query: 465 RAQIHYLEDGSVEIYSRNAERNTGKFPDVVLAVSRLKKPSVRSFVLDCEIVAYDREKQKI 524
R QIH LE G+V IYSRN E T K+PD+V + ++ KP VRS +LD E VA+D+ +++
Sbjct: 317 RTQIHVLESGAVFIYSRNQENTTSKYPDLVQRIPKMLKPGVRSCILDAEAVAWDKVTKQL 376
Query: 525 LPFQTLSTRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGF 584
PFQ L TR RK+V + IKV VC+YAFD+LY NG+PL++E L RR+ L SFEE G
Sbjct: 377 QPFQVLMTRKRKDVDAAAIKVQVCVYAFDLLYLNGEPLVREPLATRRQLLRQSFEEVEGE 436
Query: 585 FQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIES 644
F FAT++ + DE+ FLD A+ ASCEGL++KT++ +ATYE +KRS WLKLKKDY++
Sbjct: 437 FLFATSMDTRSADEVSDFLDKAIKASCEGLMVKTLEVEATYEIAKRSHKWLKLKKDYLDG 496
Query: 645 IGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSL 704
+GD+LDLV I A+ G+GKR G+YG FLLACYD +EE+QSICKIGTGF+E LE+ + L
Sbjct: 497 LGDTLDLVVIGAYLGKGKRAGIYGGFLLACYDEESEEYQSICKIGTGFTEESLEKHYNFL 556
Query: 705 RSKVIPKPRPYYRFADTISPDVWFEPTERPETSNSPASI--VYDSQI 749
+ V+ +PRPYYR+ + ++PD W + E SI VY + +
Sbjct: 557 KEHVLTQPRPYYRWDNAVAPDRWLAAVQVWEVKCGDLSISPVYRAAV 603
>FB|FBgn0262619 [details] [associations]
symbol:DNA-ligI "DNA ligase I" species:7227 "Drosophila
melanogaster" [GO:0003910 "DNA ligase (ATP) activity"
evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0051103
"DNA ligation involved in DNA repair" evidence=IEA] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0043596 "nuclear replication
fork" evidence=IDA] InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 EMBL:AE013599 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0051301 GO:GO:0003677
GO:GO:0006260 GO:GO:0007049 GO:GO:0006310 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 eggNOG:COG1793 KO:K10747
OMA:AQVACLY GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10
SUPFAM:SSF117018 TIGRFAMs:TIGR00574 GeneTree:ENSGT00700000104556
HSSP:P18858 EMBL:AY051939 EMBL:BT016103 RefSeq:NP_611843.2
UniGene:Dm.19278 ProteinModelPortal:Q9W1H4 SMR:Q9W1H4 IntAct:Q9W1H4
MINT:MINT-920323 STRING:Q9W1H4 PaxDb:Q9W1H4
EnsemblMetazoa:FBtr0072132 GeneID:37791 KEGG:dme:Dmel_CG5602
UCSC:CG5602-RA CTD:37791 FlyBase:FBgn0262619 InParanoid:Q9W1H4
OrthoDB:EOG48W9H3 PhylomeDB:Q9W1H4 GenomeRNAi:37791 NextBio:805425
Bgee:Q9W1H4 Uniprot:Q9W1H4
Length = 747
Score = 1364 (485.2 bits), Expect = 2.1e-139, P = 2.1e-139
Identities = 280/658 (42%), Positives = 410/658 (62%)
Query: 93 DTQTPKTTNSVVGEKIQEVAEEP--SNDLVKPISNQIDNP--IDSEKESQPTPPSPKKRK 148
D+ +P + K E+ +EP ++ P + P +DSE+++ P + KK
Sbjct: 17 DSPSPPKKVPKIDAKT-ELPDEPHIKSESASPETKPKVEPMSVDSEEKTSPVK-NVKKEP 74
Query: 149 VNVNSVSAKEKIAELKSNIVLLKKK--------AGEFDPKMVACWEKGERVPFIFLSLVF 200
V+ + +K+ + N K+ A + P A W+ + P++ L+ F
Sbjct: 75 KEVDDKTTDKKVTTIGLNSTAATKEDVENYDPSADSYHPLKNAYWKDKKVTPYLALARTF 134
Query: 201 DMISNETGRILITDIVCNMLRTVMETTPEDLVPVVYLAANKIAPAHEGLELGIGDASIIK 260
+I GR+ + D + N +VM +PEDLVP VYL+ N++APA+EGLELG+ + +++K
Sbjct: 135 QVIEETKGRLKMIDTLSNFFCSVMLVSPEDLVPSVYLSINQLAPAYEGLELGVAETTLMK 194
Query: 261 ALAEACGRTESHVKKQYQEMGDLGLVAKASRSSQSMMRKPDPLTITKVFDTFRLIAKEAG 320
A+ +A GR +H+K Q Q GDLG+VA+ SR SQ MM +P PL + VF R IAK +G
Sbjct: 195 AICKATGRNLAHIKSQTQLTGDLGIVAEQSRVSQRMMFQPAPLNVRDVFRKLREIAKLSG 254
Query: 321 KDSQEKKKNRIKALLVAATDCEPQYLIRLLQSKLRIGLAEQTLLAALGQAAVYNEQH--- 377
+ K + + + VA E ++ IR L KLRIG+AEQ+LL AL V + H
Sbjct: 255 ----QSKMDLVYNMFVACRSSEARFFIRSLIGKLRIGIAEQSLLTALAIGLV-KKNHIDD 309
Query: 378 ---SKPPPNIQSPLEEAAKIVKQVFSVLPVYEKIVPALLTDGVWNLSNTCSFTPGIPIGP 434
SK P + + + ++K + P Y+ I+PA+L + L C PG+P+ P
Sbjct: 310 CKASKVPDVYKDEIVDTTLLLKTAYCQCPNYDIIIPAILKYDIKELQERCPMHPGMPLRP 369
Query: 435 MLAKPTKGVSEIVNKFQDMEFTCEYKYDGERAQIHYLEDGSVEIYSRNAERNTGKFPDVV 494
MLA+PTKGV E+ +F M+ TCE+KYDGERAQIH E G + I+SRN+E NT K+PD++
Sbjct: 370 MLAQPTKGVHEVFERFGGMQITCEWKYDGERAQIHRNEKGEISIFSRNSENNTAKYPDLI 429
Query: 495 LAVSRLKKPSVRSFVLDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIKVDVCIYAFDI 554
+ L K V+S+++D EIVA+D E+++ILPFQ LSTR RKNV + +IKV VC+Y FD+
Sbjct: 430 ARSTALLKGDVKSYIIDSEIVAWDVERKQILPFQVLSTRKRKNVDIEEIKVQVCVYIFDL 489
Query: 555 LYRNGQPLLQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGL 614
LY NG L+ + L RR+ L + F+E G ++FAT L + D+DE+Q+FL+ ++ +CEGL
Sbjct: 490 LYINGTALVTKNLSERRKLLLEHFQEVEGEWKFATALDTNDIDEVQQFLEESIKGNCEGL 549
Query: 615 IIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLAC 674
++KT+D +ATYE +KRS NWLKLKKDY+ ++GDSLDLV I + G+G+RTG YG FLLAC
Sbjct: 550 MVKTLDEEATYEIAKRSRNWLKLKKDYLSNVGDSLDLVVIGGYKGKGRRTGTYGGFLLAC 609
Query: 675 YDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTE 732
YD+ NEE+QSICKIGTGF++ L+ S L V + YYR+ ++ PD WFEP +
Sbjct: 610 YDTENEEYQSICKIGTGFTDEDLQTHSEFLGKHVTSAAKSYYRYDPSLEPDHWFEPVQ 667
>UNIPROTKB|Q2TB12 [details] [associations]
symbol:LIG1 "DNA ligase" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0051103 "DNA ligation
involved in DNA repair" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0003910 "DNA
ligase (ATP) activity" evidence=IEA] InterPro:IPR000977
InterPro:IPR012308 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF01068 Pfam:PF04675 PROSITE:PS00333 PROSITE:PS00697
PROSITE:PS50160 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 IPI:IPI00219841 UniGene:Hs.1770
HOVERGEN:HBG005514 ChiTaRS:LIG1 EMBL:BC110622
ProteinModelPortal:Q2TB12 SMR:Q2TB12 STRING:Q2TB12 PRIDE:Q2TB12
ArrayExpress:Q2TB12 Uniprot:Q2TB12
Length = 801
Score = 1313 (467.3 bits), Expect = 1.2e-136, Sum P(2) = 1.2e-136
Identities = 273/609 (44%), Positives = 388/609 (63%)
Query: 93 DTQTPKTTNSVVGEKIQEVAEEPSNDLVKPISNQIDNPIDSEKESQPTPPSPKKR-KVNV 151
+T T + V K QE+ EE + KP P P P+ KK K
Sbjct: 194 ETPTESVSEPEVATK-QELQEE--EEQTKPPRRA---PKTLSSFFTPRKPAVKKEVKEEE 247
Query: 152 NSVSAKEKIAELKSNIVLLKKKAGEFDPKMVACWEKGERVPFIFLSLVFDMISNETGRIL 211
KE AE + + P ACW+ G++VP++ ++ F+ I + R+
Sbjct: 248 PGAPGKEGAAEGPLDPSGYNPAKNNYHPVEDACWKPGQKVPYLAVARTFEKIEEVSARLR 307
Query: 212 ITDIVCNMLRTVMETTPEDLVPVVYLAANKIAPAHEGLELGIGDASIIKALAEACGRTES 271
+ + + N+LR+V+ +P DL+PV+YL+ N + P +GLELG+GD ++KA+A+A GR
Sbjct: 308 MVETLSNLLRSVVALSPPDLLPVLYLSLNHLGPPQQGLELGVGDGVLLKAVAQATGRQLE 367
Query: 272 HVKKQYQEMGDLGLVAKASRSSQSMMRKPDPLTITKVFDTFRLIAKEAGKDSQEKKKNRI 331
V+ + E GD+GLVA+ SRS+Q +M P PLT + VF FR IA+ G S KK + I
Sbjct: 368 SVRAEAAEKGDVGLVAENSRSTQRLMLPPPPLTASGVFSKFRDIARLTGSASTAKKIDII 427
Query: 332 KALLVAATDCEPQYLIRLLQSKLRIGLAEQTLLAALGQAAVYNEQHSKPPPNI------- 384
K L VA E +++ R L +LR+GLAEQ++LAAL QA + PP +
Sbjct: 428 KGLFVACRHSEARFIARSLSGRLRLGLAEQSVLAALSQAVSLTPPGQEFPPAMVDAGKGK 487
Query: 385 -----QSPLEEAAKIVKQVFSVLPVYEKIVPALLTDGVWNLSNTCSFTPGIPIGPMLAKP 439
++ LEE I+KQ F +P ++I+P LL G+ L C +PGIP+ PMLA P
Sbjct: 488 TAEARKTWLEEQGMILKQTFCEVPDLDRIIPVLLEHGLERLPEHCKLSPGIPLKPMLAHP 547
Query: 440 TKGVSEIVNKFQDMEFTCEYKYDGERAQIHYLEDGSVEIYSRNAERNTGKFPDVVLAVSR 499
T+G+SE++ +F++ FTCEYKYDG+RAQIH LE G V+I+SRN E NTGK+PD++ + +
Sbjct: 548 TRGISEVLKRFEEAAFTCEYKYDGQRAQIHALEGGEVKIFSRNQEDNTGKYPDIISRIPK 607
Query: 500 LKKPSVRSFVLDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIKVDVCIYAFDILYRNG 559
+K PSV SF+LD E VA+DREK++I PFQ L+TR RK V S+I+V VC+YAFD++Y NG
Sbjct: 608 IKLPSVTSFILDTEAVAWDREKKQIQPFQVLTTRKRKEVDASEIQVQVCLYAFDLIYLNG 667
Query: 560 QPLLQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTM 619
+ L++E L RR+ L ++F E G F FAT+L + D+++I +FL+ +V SCEGL++KT+
Sbjct: 668 ESLVREPLSRRRQLLRENFVETEGEFVFATSLDTKDIEQIAEFLEQSVKDSCEGLMVKTL 727
Query: 620 DRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNN 679
D DATYE +KRS NWLKLKKDY++ +GD+LDLV I A+ GRGKR G YG FLLA YD ++
Sbjct: 728 DVDATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRAGRYGGFLLASYDEDS 787
Query: 680 EEFQSICKI 688
EE Q+ICK+
Sbjct: 788 EELQAICKV 796
Score = 46 (21.3 bits), Expect = 1.2e-136, Sum P(2) = 1.2e-136
Identities = 15/30 (50%), Positives = 15/30 (50%)
Query: 89 RRTLDTQTPKTTNSVVGEKIQEVAEEPSND 118
RRT Q PK T IQEV EE S D
Sbjct: 121 RRTARKQLPKRT-------IQEVLEEQSED 143
>UNIPROTKB|Q7RYJ3 [details] [associations]
symbol:NCU06481 "DNA ligase" species:367110 "Neurospora
crassa OR74A" [GO:0003910 "DNA ligase (ATP) activity" evidence=IBA]
[GO:0005634 "nucleus" evidence=IBA] [GO:0005694 "chromosome"
evidence=IBA] [GO:0005739 "mitochondrion" evidence=IBA] [GO:0006266
"DNA ligation" evidence=IBA] [GO:0006273 "lagging strand
elongation" evidence=IBA] [GO:0006289 "nucleotide-excision repair"
evidence=IBA] InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005739 GO:GO:0005524
GO:GO:0005634 GO:GO:0005694 GO:GO:0003677 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006289
GO:GO:0006273 eggNOG:COG1793 HOGENOM:HOG000036006 KO:K10747
GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 OrthoDB:EOG4RV60K EMBL:AABX02000027 OMA:ETICNIG
RefSeq:XP_957121.1 UniGene:Ncr.25681 ProteinModelPortal:Q7RYJ3
STRING:Q7RYJ3 EnsemblFungi:EFNCRT00000006215 GeneID:3873294
KEGG:ncr:NCU06481 Uniprot:Q7RYJ3
Length = 923
Score = 727 (261.0 bits), Expect = 3.2e-136, Sum P(2) = 3.2e-136
Identities = 138/276 (50%), Positives = 196/276 (71%)
Query: 460 KYDGERAQIHYLEDGS--VEIYSRNAERNTGKFPDVVLAVSRLKKPSVRSFVLDCEIVAY 517
K +G+ +Q+ + G I+SRN+E + K+PDV+ + K +SFVLDCE VA+
Sbjct: 566 KSEGDLSQVASKDTGKGVAAIFSRNSEDLSQKYPDVLAKLPTWVKEGTKSFVLDCESVAW 625
Query: 518 DREKQKILPFQTLSTRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDS 577
D +K+LPFQ L TR +K+V L D+KV VC++AFD+LY NGQ ++++ LR RRE L ++
Sbjct: 626 DTVDKKVLPFQQLMTRKKKDVKLEDVKVKVCVFAFDLLYLNGQAVVEKSLRERRELLREA 685
Query: 578 FEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMD-RDATYEPSKRSLNWLK 636
F+ G F FAT++ +LDEIQ FLD +V A CEGL++K +D ++ YEPSKRS NWLK
Sbjct: 686 FKPVEGEFAFATSMDGQELDEIQSFLDESVKAGCEGLMVKMLDGAESGYEPSKRSRNWLK 745
Query: 637 LKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAM 696
+KKDY+ IGDSLDLV + A+HG+GKRT V+GAFLLACY+ + + ++++C IGTGFS+ +
Sbjct: 746 IKKDYLAGIGDSLDLVVLGAYHGKGKRTSVFGAFLLACYNPSTDTYETVCNIGTGFSDEV 805
Query: 697 LEERSSSLRSKVIPKPRPYYRFAD--TISPDVWFEP 730
L+E SSL +I +P+P+Y + PDVWFEP
Sbjct: 806 LQELHSSLSPIIIDRPKPFYAHSSGGQHQPDVWFEP 841
Score = 628 (226.1 bits), Expect = 3.2e-136, Sum P(2) = 3.2e-136
Identities = 155/413 (37%), Positives = 229/413 (55%)
Query: 97 PKTTNSVVGEKIQEVAEEPSNDLVKPISNQIDNPIDSEKESQPTPPSPKKRKVNVNSVSA 156
P ++ V EK ++ A P L K S+ P++ +++ + S + +
Sbjct: 174 PASSAPVKEEKSKKAAS-PKPALKKKSSSPA--PVEKANDAEASSASASEIEAEEEDEDE 230
Query: 157 K-EKIAELKSNIVLLKKKAGEFDPKMVACWEKGERVPFIFLSLVFDMISNETGRILITDI 215
K E +A+ ++ DP W+ GE VP+ L F +I R+LI +
Sbjct: 231 KTEAVAKEARKVIQTTLATKVKDP--YPDWKAGEPVPYAALCTTFSLIEQTRKRLLIMEY 288
Query: 216 VCNMLRTVMETTPEDLVPVVYLAANKIAPAHEGLELGIGDASIIKALAEACGRTESHVKK 275
LR V+ TP+DL+P V L NK+AP + G+ELGIG++ I+KA+ E GR+ + VK
Sbjct: 289 CSLFLRQVLRLTPDDLLPTVLLMINKLAPDYAGIELGIGESLIMKAIGETTGRSIAVVKN 348
Query: 276 QYQEMGDLGLVAKASRSSQSMMRKPDPLTITKVFDTFRLIAKE-AGKDSQEKKKNRIKAL 334
+E+GDLGLVA SRS Q M KP PLTI V IA G +Q+KK + IK L
Sbjct: 349 DQKEIGDLGLVAVKSRSKQPTMFKPKPLTIRGVHKGLMDIATTMTGTGAQQKKVDGIKKL 408
Query: 335 LVAA-------TDC--------EPQYLIRLLQSKLRIGLAEQTLLAALGQAAVYNEQHSK 379
L AA D E ++++R L+ KLR+GLAE++++ +L QA + +E K
Sbjct: 409 LSAADANSTGKVDITKDKGGPSEAKFIVRFLEGKLRLGLAEKSVIVSLAQAMIAHEFAQK 468
Query: 380 PPPNIQSPLEEAAKIVKQVFSVLPVYEKIVPALLTDGVWNLSNTCSFTPGIPIGPMLAKP 439
+S +A I+K V+S LP Y+ I+PA+L G+ NL C PG+P+ PMLA P
Sbjct: 469 GKIPSESDFSKAESILKTVYSELPSYDVIIPAMLQHGIMNLREHCKLRPGVPLKPMLANP 528
Query: 440 TKGVSEIVNKFQDMEFTCEYKYDGERAQIHYL-ED--GSVEIYSRNAERNTGK 489
TK ++E++++F+ FTCEYKYDGERAQIHY+ +D S S+ A ++TGK
Sbjct: 529 TKAITEVLDRFEGQTFTCEYKYDGERAQIHYVAKDVPKSEGDLSQVASKDTGK 581
Score = 49 (22.3 bits), Expect = 4.1e-75, Sum P(2) = 4.1e-75
Identities = 13/58 (22%), Positives = 23/58 (39%)
Query: 98 KTTNSVVGEKIQEVAEEPSNDLVKPISNQIDNPIDSEKESQPTPPSPKKRKVNVNSVS 155
+ V EK +E ++V+ + + N ++ PT SPK +K S
Sbjct: 90 EVAKEVAKEKSSAEEDEDVMEVVEEVKEETGNK--KKRSRSPTTKSPKSKKAKTEEDS 145
>POMBASE|SPAC20G8.01 [details] [associations]
symbol:cdc17 "ATP-dependent DNA ligase Cdc17"
species:4896 "Schizosaccharomyces pombe" [GO:0000723 "telomere
maintenance" evidence=IMP] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003909 "DNA ligase activity" evidence=IMP;IDA] [GO:0003910
"DNA ligase (ATP) activity" evidence=IGI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0006281 "DNA repair" evidence=IMP] [GO:0006284
"base-excision repair" evidence=ISS] [GO:0006289
"nucleotide-excision repair" evidence=ISS] [GO:0006310 "DNA
recombination" evidence=ISS] [GO:0007090 "regulation of S phase of
mitotic cell cycle" evidence=IMP] [GO:0033567 "DNA replication,
Okazaki fragment processing" evidence=IMP] [GO:0043137 "DNA
replication, removal of RNA primer" evidence=TAS] [GO:0043596
"nuclear replication fork" evidence=IC] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0051103 "DNA ligation involved in DNA
repair" evidence=IEA] InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 PomBase:SPAC20G8.01 GO:GO:0005739
GO:GO:0005524 EMBL:CU329670 GO:GO:0051301 GenomeReviews:CU329670_GR
GO:GO:0046872 GO:GO:0006284 GO:GO:0003677 GO:GO:0007049
GO:GO:0043596 GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0000723 GO:GO:0006289 GO:GO:0007090
GO:GO:0043137 eggNOG:COG1793 HOGENOM:HOG000036006 KO:K10747
OMA:AQVACLY GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10
SUPFAM:SSF117018 TIGRFAMs:TIGR00574 EMBL:X05107 PIR:A29066
RefSeq:NP_593318.2 ProteinModelPortal:P12000 STRING:P12000
EnsemblFungi:SPAC20G8.01.1 GeneID:2541849 KEGG:spo:SPAC20G8.01
OrthoDB:EOG4RV60K NextBio:20802937 Uniprot:P12000
Length = 768
Score = 1331 (473.6 bits), Expect = 6.7e-136, P = 6.7e-136
Identities = 283/647 (43%), Positives = 401/647 (61%)
Query: 90 RTLDTQTPKTTNSVVGEKIQEVAEEPSNDLVKPISNQIDNPIDSEKESQPT--PPSPKKR 147
+ +D ++ V K+ + ++ ++D + + +N I SE + Q T S
Sbjct: 52 KNVDGRSTSEKRKVESVKLVDESKHNNHDDTGTQNVERENNIVSEAKKQKTLGSSSSSSD 111
Query: 148 KVNVNSVSAKEKIAELKSNIVLLKKKAGEFDPKMVACWEKGERVPFIFLSLVFDMISNET 207
V+ N+ S L L+ A + K+ KG F + F I N +
Sbjct: 112 AVSSNNDSGASTPIPLPIKEPPLESNAR--NDKL-----KGHAT-FAEMVKAFTKIENTS 163
Query: 208 GRILITDIVCNMLRTVMETTPEDLVPVVYLAANKIAPAHEGLELGIGDASIIKALAEACG 267
R+ I DI+ ++ P DL+ VYL+ NK+ P + GLELGIG++ I+KA+ E+ G
Sbjct: 164 KRLEIIDIMGTYFFGILRDHPSDLLACVYLSINKLGPDYSGLELGIGESIIMKAIGESTG 223
Query: 268 RTESHVKKQYQEMGDLGLVAKASRSSQSMMRKPDPLTITKVFDTFRLIAKEAGKDSQEKK 327
+T +K + ++GDLGLVA+ SR +Q M KP LTI +FD+ + IA+ +G SQ +K
Sbjct: 224 QTLQQIKLSFHKVGDLGLVAQTSRQNQPTMFKPAALTIPFLFDSLKKIAQMSGNQSQNRK 283
Query: 328 KNRIKALLVAATDCEPQYLIRLLQSKLRIGLAEQTLLAALGQA-AVYNEQHSKPPPNIQS 386
IK LL + EP+YLIR L+ KLR+ LAE+T+L AL A A Y+ + + Q
Sbjct: 284 IGVIKRLLSSCEGAEPKYLIRALEGKLRLQLAEKTILVALANATAQYHADKNGEKLSQQD 343
Query: 387 PLEEAAKIVKQVFSVLPVYEKIVPALLTDGVWNLSNTCSFTPGIPIGPMLAKPTKGVSEI 446
+E +I++ V+ LP Y+ IVP L+ G+ L TC TPGIP PMLAKPTK +SE+
Sbjct: 344 RIE-GEQILRDVYCQLPSYDLIVPHLIEHGLGTLRETCKLTPGIPTKPMLAKPTKQISEV 402
Query: 447 VNKFQDMEFTCEYKYDGERAQIHYLEDGSVEIYSRNAERNTGKFPDVVLAVSRLKKPSVR 506
+N F FTCEYKYDGERAQ+H+ EDG ++SRN+E + ++PD+ ++VS+ KKP R
Sbjct: 403 LNTFDQAAFTCEYKYDGERAQVHFTEDGKFYVFSRNSENMSVRYPDISVSVSKWKKPDAR 462
Query: 507 SFVLDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQ 566
SF+LDCE V +DR++ KILPFQ L+TR RK+V + DIKV C++AFDILY NGQPLL+
Sbjct: 463 SFILDCEAVGWDRDENKILPFQKLATRKRKDVKIGDIKVRACLFAFDILYLNGQPLLETP 522
Query: 567 LRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDR-DATY 625
L RR+ LY F+ G F FA ++ I++FL+ +V SCEGL++K ++ D+ Y
Sbjct: 523 LNERRKLLYSMFQPSTGDFTFAKHSDQKSIESIEEFLEESVKDSCEGLMVKMLEGPDSHY 582
Query: 626 EPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSI 685
EPSKRS +WLK+KKDY+ +GDSLDL+ I A++G+GKRT VYGAFLL CYD + E QSI
Sbjct: 583 EPSKRSRHWLKVKKDYLSGVGDSLDLIVIGAYYGKGKRTSVYGAFLLGCYDPDTETVQSI 642
Query: 686 CKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTIS--PDVWFEP 730
CK+GTGFSE LE + L+ VI K + +Y +D + PDVWFEP
Sbjct: 643 CKLGTGFSEEHLETFYNQLKDIVISKKKDFYAHSDVPAHQPDVWFEP 689
>SGD|S000002323 [details] [associations]
symbol:CDC9 "DNA ligase found in the nucleus and
mitochondria" species:4932 "Saccharomyces cerevisiae" [GO:0006260
"DNA replication" evidence=IEA] [GO:0000278 "mitotic cell cycle"
evidence=IMP] [GO:0006310 "DNA recombination" evidence=IEA;IMP]
[GO:0003910 "DNA ligase (ATP) activity" evidence=IEA;IDA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0007049 "cell cycle" evidence=IEA] [GO:0006284 "base-excision
repair" evidence=IMP] [GO:0006266 "DNA ligation" evidence=IMP;IDA]
[GO:0006273 "lagging strand elongation" evidence=IDA;IMP]
[GO:0016874 "ligase activity" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IMP] [GO:0051301 "cell division" evidence=IEA] [GO:0005657
"replication fork" evidence=NAS] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0005739 "mitochondrion" evidence=IEA;IMP;IDA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0051103 "DNA ligation
involved in DNA repair" evidence=IEA] [GO:0003909 "DNA ligase
activity" evidence=IEA] InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 SGD:S000002323 GO:GO:0005739
GO:GO:0005524 GO:GO:0005634 GO:GO:0051301 GO:GO:0046872
GO:GO:0006284 GO:GO:0003677 EMBL:BK006938 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 EMBL:Z67750
GO:GO:0006289 GO:GO:0000278 GO:GO:0005657 GO:GO:0006273
eggNOG:COG1793 HOGENOM:HOG000036006 KO:K10747 OMA:AQVACLY
GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 GeneTree:ENSGT00700000104556 OrthoDB:EOG4RV60K
EMBL:X03246 EMBL:Z74212 EMBL:AY723764 EMBL:X68020 PIR:S61049
RefSeq:NP_010117.1 PDB:2OD8 PDBsum:2OD8 ProteinModelPortal:P04819
SMR:P04819 DIP:DIP-5630N IntAct:P04819 MINT:MINT-499551
STRING:P04819 PaxDb:P04819 PeptideAtlas:P04819 EnsemblFungi:YDL164C
GeneID:851391 KEGG:sce:YDL164C CYGD:YDL164c
EvolutionaryTrace:P04819 NextBio:968546 Genevestigator:P04819
GermOnline:YDL164C Uniprot:P04819
Length = 755
Score = 1307 (465.1 bits), Expect = 2.3e-133, P = 2.3e-133
Identities = 253/558 (45%), Positives = 375/558 (67%)
Query: 191 VPFIFLSLVFDMISNETGRILITDIVCNMLRTVMETTPEDLVPVVYLAANKIAPAHE-GL 249
+P+ + VF+ I + R+ I I + +M+ + ++L+P YL N++ P +E GL
Sbjct: 146 IPYSEVCEVFNKIEAISSRLEIIRICSDFFIKIMKQSSKNLIPTTYLFINRLGPDYEAGL 205
Query: 250 ELGIGDASIIKALAEACGRTESHVKKQYQEMGDLGLVAKASRSSQSMMRKPDPLTITKVF 309
ELG+G+ ++K ++E CG++ S +K +Y+++GDLG +A +R+ Q M KP PLT+ +VF
Sbjct: 206 ELGLGENLLMKTISETCGKSMSQIKLKYKDIGDLGEIAMGARNVQPTMFKPKPLTVGEVF 265
Query: 310 DTFRLIAKEAGKDSQEKKKNRIKALLVAATDCEPQYLIRLLQSKLRIGLAEQTLLAALGQ 369
R IAK GKDSQ KK IK +L A E ++LIR L+SKLRIGLAE+T+L +L +
Sbjct: 266 KNLRAIAKTQGKDSQLKKMKLIKRMLTACKGIEAKFLIRSLESKLRIGLAEKTVLISLSK 325
Query: 370 AAVYNEQHSKPPPNIQSP---LEEAAKIVKQVFSVLPVYEKIVPALLTDGVWNLSNTCSF 426
A + ++++ + P+ P LE A + ++ F +P YE ++ + L G+ NL C+
Sbjct: 326 ALLLHDENREDSPDKDVPMDVLESAQQKIRDAFCQVPNYEIVINSCLEHGIMNLDKYCTL 385
Query: 427 TPGIPIGPMLAKPTKGVSEIVNKFQDMEFTCEYKYDGERAQIHYLEDGSVEIYSRNAERN 486
PGIP+ PMLAKPTK ++E++++FQ FT EYKYDGERAQ+H L DG++ IYSRN E
Sbjct: 386 RPGIPLKPMLAKPTKAINEVLDRFQGETFTSEYKYDGERAQVHLLNDGTMRIYSRNGENM 445
Query: 487 TGKFPDVVLAVSRLKKPSVRSFVLDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIKVD 546
T ++P++ + + ++ +LDCE VA+D+++ KILPFQ LSTR RK+V L+D+KV
Sbjct: 446 TERYPEINITDFIQDLDTTKNLILDCEAVAWDKDQGKILPFQVLSTRKRKDVELNDVKVK 505
Query: 547 VCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAA 606
VC++AFDIL N + L+ + L+ RRE+L + PG FQ+AT +T+ +LDE+QKFLD +
Sbjct: 506 VCLFAFDILCYNDERLINKSLKERREYLTKVTKVVPGEFQYATQITTNNLDELQKFLDES 565
Query: 607 VDASCEGLIIKTMDR-DATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTG 665
V+ SCEGL++K ++ ++ YEPSKRS NWLKLKKDY+E +GDSLDL + A++GRGKRTG
Sbjct: 566 VNHSCEGLMVKMLEGPESHYEPSKRSRNWLKLKKDYLEGVGDSLDLCVLGAYYGRGKRTG 625
Query: 666 VYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPD 725
YG FLL CY+ + EF++ CKIGTGFS+ ML+ L +I P+ + F + PD
Sbjct: 626 TYGGFLLGCYNQDTGEFETCCKIGTGFSDEMLQLLHDRLTPTIIDGPKATFVFDSSAEPD 685
Query: 726 VWFEPTERPETSNSPASI 743
VWFEPT E + S+
Sbjct: 686 VWFEPTTLFEVLTADLSL 703
>UNIPROTKB|H9L029 [details] [associations]
symbol:LIG1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003910 "DNA
ligase (ATP) activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0051103 "DNA
ligation involved in DNA repair" evidence=IEA] InterPro:IPR000977
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679
PROSITE:PS00333 PROSITE:PS50160 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10
SUPFAM:SSF117018 TIGRFAMs:TIGR00574 GeneTree:ENSGT00700000104556
EMBL:AADN02065151 EMBL:AADN02065152 EMBL:AADN02065153
Ensembl:ENSGALT00000021833 Uniprot:H9L029
Length = 654
Score = 1301 (463.0 bits), Expect = 1.0e-132, P = 1.0e-132
Identities = 266/588 (45%), Positives = 375/588 (63%)
Query: 177 FDPKMVACWEKGERVPFIFLSLVFDMISNETGRILITDIVCNMLRTVMETTPEDLVPVVY 236
+ P ACW G VP++ ++ F+ I + R+ I +I+ N+LR+V+ +P +L+P +
Sbjct: 14 YHPVQDACWGHGRSVPYLAVARTFERIEEASSRLKIIEILTNLLRSVVALSPSELLPCLL 73
Query: 237 LAANKIAPAHEGLELGIGDASIIKALAEACGRTESHVKKQYQEMGDLGLVAKASRSSQSM 296
L N+ EGLELGIG+ + +ALA+A GR + ++ + Q+ GDLGLVA++SR +Q
Sbjct: 74 LCLNRPGAPSEGLELGIGETLLTRALAQATGRQLAQIRSEAQDKGDLGLVAESSRCTQRT 133
Query: 297 MRKPDPLTITKVFDTFRLIAKEAGKD-SQEKKKNRIKALLVAATDCEPQYLIRLLQSKLR 355
+ P PL+ + V R +A +G S + L+ C + R L KLR
Sbjct: 134 VVPPAPLSASGVLGKLREMAAMSGNAVSLGTMWVELVTFLLCQRCCV--FCSRSLSGKLR 191
Query: 356 IGLAEQTLLAALGQA------------AVYNEQHSKPPPNIQSPLEEAAKIVKQVFSVLP 403
IGLAEQ++L AL A AV + S P ++ LEE ++I+KQ F LP
Sbjct: 192 IGLAEQSVLTALAHAIALTPPGQEWPLAVVDAGQSMAPDARRTWLEEQSRILKQTFCELP 251
Query: 404 VYEKIVPALLTDGVWNLSNTCSFTPGIPIGPMLAKPTKGVSEIVNKFQDMEFTCEYKYDG 463
Y IVP LL G+ L C TPG+P+ PMLA+P + VSE++ +F++ FTCEYKYDG
Sbjct: 252 DYAAIVPVLLEHGLEQLPKHCGITPGVPLKPMLAQPARCVSELLKRFEEAAFTCEYKYDG 311
Query: 464 ERAQIHYLEDGSVEIYSRNAERNTGKFPDVVLAVSRLKKPSVRSFVLDCEIVAYDREKQK 523
ER QIH LE G+V IYSRN E T K+PD+V + ++ KP VRS +LD E VA+D+ ++
Sbjct: 312 ERTQIHVLESGAVFIYSRNQENTTSKYPDLVQRIPKMLKPGVRSCILDAEAVAWDKVTKQ 371
Query: 524 ILPFQTLSTRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPG 583
+ PFQ L TR RK+V + IKV VC+YAFD+LY NG+PL++E L RR+ L SFEE G
Sbjct: 372 LQPFQVLMTRKRKDVDAAAIKVQVCVYAFDLLYLNGEPLVREPLATRRQLLRQSFEEVEG 431
Query: 584 FFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIE 643
F FAT++ + DE+ FLD A+ ASCEGL++KT++ +ATYE +KRS WLKLKKDY++
Sbjct: 432 EFLFATSMDTRSADEVSDFLDKAIKASCEGLMVKTLEVEATYEIAKRSHKWLKLKKDYLD 491
Query: 644 SIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSS 703
+GD+LDLV I A+ G+GKR G+YG FLLACYD +EE+QSICKIGTGF+E LE+ +
Sbjct: 492 GLGDTLDLVVIGAYLGKGKRAGIYGGFLLACYDEESEEYQSICKIGTGFTEESLEKHYNF 551
Query: 704 LRSKVIPKPRPYYRFADTISPDVWFEPTERPETSNSPASI--VYDSQI 749
L+ V+ +PRPYYR+ + ++PD W + E SI VY + +
Sbjct: 552 LKEHVLTQPRPYYRWDNAVAPDRWLAAVQVWEVKCGDLSISPVYRAAV 599
>CGD|CAL0006047 [details] [associations]
symbol:orf19.6155 species:5476 "Candida albicans" [GO:0003910
"DNA ligase (ATP) activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0000278
"mitotic cell cycle" evidence=IEA] [GO:0006266 "DNA ligation"
evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0007090 "regulation of S phase of mitotic cell
cycle" evidence=IEA] [GO:0006284 "base-excision repair"
evidence=IEA] [GO:0006273 "lagging strand elongation" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0000723 "telomere
maintenance" evidence=IEA] InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 CGD:CAL0006047 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0006310 EMBL:AACQ01000251
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
eggNOG:COG1793 KO:K10747 GO:GO:0003910 GO:GO:0051103
Gene3D:1.10.3260.10 SUPFAM:SSF117018 TIGRFAMs:TIGR00574
RefSeq:XP_710637.1 ProteinModelPortal:Q59LP7 STRING:Q59LP7
GeneID:3647757 KEGG:cal:CaO19.6155 Uniprot:Q59LP7
Length = 770
Score = 1237 (440.5 bits), Expect = 4.3e-128, Sum P(2) = 4.3e-128
Identities = 258/559 (46%), Positives = 367/559 (65%)
Query: 186 EK-GERVPFIFLSLVFDMISNETGRILITDIVCNM-LRTVMETTPEDLVPVVYLAANKIA 243
EK G ++P+ L+ VF+ I NE+ R+ I I+ L + ++T + L+ +VYL N++
Sbjct: 151 EKLGVKIPYAKLASVFEAIENESSRLAIIAIISQFFLEVLQQSTIDKLIRIVYLCINRLG 210
Query: 244 PAHE-GLELGIGDASIIKALAEACGRTESHVKKQYQEMGDLGLVAKASRSSQSMMRKPDP 302
P +E GLELG+G+ +IKA++E GR S +K Y+ GDLGL+A+ SRS Q M K P
Sbjct: 211 PDYEPGLELGLGETILIKAISECYGRETSKIKADYKSTGDLGLIAQKSRSLQPTMFKTAP 270
Query: 303 LTITKVFDTFRLIAKEAGKDSQEKKKNRIKALLVAAT--DCEPQYLIRLLQSKLRIGLAE 360
L + VFD IAK GK+SQ KK + IK +L A E ++LIR LQ KLRIG AE
Sbjct: 271 LDVDTVFDNSLKIAKSTGKESQSKKISIIKQMLTACQMKSSEAKFLIRSLQGKLRIGSAE 330
Query: 361 QTLLAALGQAAV-Y-NEQHSKPPPNIQSPLEEAAKIVKQVFSVLPVYEKIVPALLTDGVW 418
++++ L QA V Y N+ + K P S L EA +I+K+ FS +P YE ++ G++
Sbjct: 331 KSIIVGLAQAFVNYENKSNKKIDP---SKLAEAEEIMKEAFSRVPNYEVVLKTAYQYGIF 387
Query: 419 NLSNTCSFTPGIPIGPMLAKPTKGVSEIVNKFQDMEFTCEYKYDGERAQIHYLEDGSVEI 478
NL C TPGIP+ PMLA PTK + E++++FQ+ EFTCEYKYDG RAQ+H L DGS+++
Sbjct: 388 NLLEHCFVTPGIPLKPMLANPTKSIGEVLDRFQNEEFTCEYKYDGVRAQVHILSDGSIKV 447
Query: 479 YSRNAERNTGKFPDVVLAVSRLK-KPSVRSFVLDCEIVAYDREKQKILPFQTLSTRARKN 537
+SRN E T +PD++ + + S +LDCE VA+DRE KILPFQ L+TR RK+
Sbjct: 448 FSRNLEDMTQTYPDLISIGKQFAVSGNTISMILDCEAVAWDREDHKILPFQKLTTRKRKD 507
Query: 538 VSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFFQFAT-TLTSIDL 596
V+ DIKV +C++AFD+LY + + LL + L RR+ + ++ FQFAT T +S +L
Sbjct: 508 VNEEDIKVQICLFAFDLLYYDNESLLPKSLAERRKIMQENLSPIEDRFQFATATNSSSNL 567
Query: 597 DEIQKFLDAAVDASCEGLIIKTMD-RDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIA 655
+ +Q+FLD ++ SCEGL++K ++ ++ YEPSKRS NWLKLKKDY+E +GDSLDLV I
Sbjct: 568 EVLQQFLDQSIKDSCEGLMVKMLNGSESFYEPSKRSRNWLKLKKDYLEGVGDSLDLVVIG 627
Query: 656 AFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPY 715
A++G+GKRTG YG FLLA Y+ ++ + ++ CKIGTGFS+ L + L I P+ Y
Sbjct: 628 AYNGKGKRTGTYGGFLLASYNEDSGDLETCCKIGTGFSDEDLLNLYNKLHPTEIASPKNY 687
Query: 716 YRFADTIS---PDVWFEPT 731
+ + S PDVWFEP+
Sbjct: 688 FVYDTNNSNAVPDVWFEPS 706
Score = 41 (19.5 bits), Expect = 4.3e-128, Sum P(2) = 4.3e-128
Identities = 13/59 (22%), Positives = 23/59 (38%)
Query: 97 PKTTNSVVGEKIQEVAEEPSNDLVKPISNQIDNPIDSEKESQP--TPPSPKKRKVNVNS 153
P +NS EK Q + + + ++E+ P +PP KK ++ S
Sbjct: 41 PSGSNSTSPEKQQSLTRFFGSSSNNSSPKKATTEAKQKREATPPKSPPRSKKARIETKS 99
>WB|WBGene00002985 [details] [associations]
symbol:lig-1 species:6239 "Caenorhabditis elegans"
[GO:0003910 "DNA ligase (ATP) activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003909 "DNA ligase activity" evidence=IEA]
[GO:0051103 "DNA ligation involved in DNA repair" evidence=IEA]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0051301 "cell division" evidence=IMP] [GO:0000910
"cytokinesis" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005739 GO:GO:0005524
GO:GO:0005634 GO:GO:0009792 GO:GO:0006898 GO:GO:0005694
GO:GO:0046872 GO:GO:0003677 GO:GO:0007049 GO:GO:0000910
GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0006273 eggNOG:COG1793 HOGENOM:HOG000036006 KO:K10747
OMA:AQVACLY GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10
SUPFAM:SSF117018 TIGRFAMs:TIGR00574 EMBL:Z73970 PIR:T19544
RefSeq:NP_741625.2 RefSeq:NP_741626.2 ProteinModelPortal:Q27474
SMR:Q27474 STRING:Q27474 PaxDb:Q27474 PRIDE:Q27474
EnsemblMetazoa:C29A12.3a GeneID:179502 KEGG:cel:CELE_C29A12.3
UCSC:C29A12.3a CTD:179502 WormBase:C29A12.3a WormBase:C29A12.3b
GeneTree:ENSGT00700000104556 InParanoid:Q27474 NextBio:905678
Uniprot:Q27474
Length = 773
Score = 1256 (447.2 bits), Expect = 5.9e-128, P = 5.9e-128
Identities = 251/548 (45%), Positives = 357/548 (65%)
Query: 185 WEKGERVPFIFLSLVFDMISNETGRILITDIVCNMLRTVMETTPEDLVPVVYLAANKIAP 244
W KG +VP+ +L + I +G+ + D + V++ +P+DL VY++ N++ P
Sbjct: 13 WAKGSKVPYKEFALTLEKIEELSGKKKV-DELAQFFTKVLDFSPDDLTACVYMSVNQLGP 71
Query: 245 AHEGLELGIGDASIIKALAEACGRTESHVKKQYQEMGDLGLVAKASRSSQSMMRKPDPLT 304
++EGLELG+ + S+IKA+A+A GRTE +K+ + GDLG VA+ SRS+Q M+ P LT
Sbjct: 72 SYEGLELGVAENSLIKAVAKATGRTEGKIKEDLRAKGDLGTVAQQSRSNQKMLAVPKALT 131
Query: 305 ITKVFDTFRLIAKEAGKDSQEKKKNRIKALLVAATDCEPQYLIRLLQSKLRIGLAEQTLL 364
+ VF+ IAK +G + KK + I ALL+A E ++L+R+L K+RIGL EQ++L
Sbjct: 132 VPTVFNKLTEIAKLSGTSAMNKKVDAISALLIACQGIEARFLVRMLAGKMRIGLGEQSVL 191
Query: 365 AALGQAAVYNE-QHSKPPPNIQSPLEEA-AKIVKQVFSVLPVYEKIVPALLTDGVWNLSN 422
+ALG A ++ K + L++A K VK + P Y +++ LT+GV L
Sbjct: 192 SALGHAFTLSKITDQKVRGDKLDSLKDANVKRVKTAYCECPNYNRLIEVALTEGVEALVE 251
Query: 423 TCSFTPGIPIGPMLAKPTKGVSEIVNKFQDMEFTCEYKYDGERAQIHYLEDGSVEIYSRN 482
C +PGIP+ PMLA PTKG+ EI+ +F++ TCE+KYDGER QIH EDG + IYSRN
Sbjct: 252 KCKLSPGIPLKPMLAHPTKGIDEIMRRFRNQTMTCEWKYDGERGQIHKREDGQIFIYSRN 311
Query: 483 AERNTGKFPDVVLAVSRLKKPSVRSFVLDCEIVAYDREKQKILPFQTLSTRARKNVSLSD 542
E NT K+PD++ +S V SF++D E+VA D E ILPFQ LSTR RKN + D
Sbjct: 312 QENNTTKYPDIIEKISSCIGDGVTSFIVDAEVVAID-EAGLILPFQVLSTRKRKNAT-DD 369
Query: 543 IKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKF 602
V V ++ FD+LY NG+PL+++ LR RRE L +F++ G F FAT++ + D DEI F
Sbjct: 370 NGVKVVVFLFDLLYFNGEPLVRKPLRKRRELLRTNFKKIDGSFYFATSVDTNDTDEINSF 429
Query: 603 LDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGK 662
D AV CEGL+IKT+D +ATYE S+RS +WLK+KKDY++ +GD+LDLV + A+ G GK
Sbjct: 430 FDEAVQNKCEGLMIKTLDTEATYEISRRSHSWLKMKKDYVDGVGDTLDLVVMGAYSGVGK 489
Query: 663 RTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTI 722
RTGVYG +LL CY+ EE++S+CKIGTGF++ L E+ L+ K I K YY+F T+
Sbjct: 490 RTGVYGGYLLGCYNPTTEEYESVCKIGTGFTDEDLAEQYKILQDKKIDKSPSYYQFDHTL 549
Query: 723 SPDVWFEP 730
PD F P
Sbjct: 550 KPDDTFSP 557
>UNIPROTKB|Q27474 [details] [associations]
symbol:lig-1 "DNA ligase 1" species:6239 "Caenorhabditis
elegans" [GO:0006289 "nucleotide-excision repair" evidence=IBA]
[GO:0006273 "lagging strand elongation" evidence=IBA] [GO:0006266
"DNA ligation" evidence=IBA] [GO:0005739 "mitochondrion"
evidence=IBA] [GO:0005694 "chromosome" evidence=IBA] [GO:0005634
"nucleus" evidence=IBA] [GO:0003910 "DNA ligase (ATP) activity"
evidence=IBA] InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005739 GO:GO:0005524
GO:GO:0005634 GO:GO:0009792 GO:GO:0006898 GO:GO:0005694
GO:GO:0046872 GO:GO:0003677 GO:GO:0007049 GO:GO:0000910
GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0006273 eggNOG:COG1793 HOGENOM:HOG000036006 KO:K10747
OMA:AQVACLY GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10
SUPFAM:SSF117018 TIGRFAMs:TIGR00574 EMBL:Z73970 PIR:T19544
RefSeq:NP_741625.2 RefSeq:NP_741626.2 ProteinModelPortal:Q27474
SMR:Q27474 STRING:Q27474 PaxDb:Q27474 PRIDE:Q27474
EnsemblMetazoa:C29A12.3a GeneID:179502 KEGG:cel:CELE_C29A12.3
UCSC:C29A12.3a CTD:179502 WormBase:C29A12.3a WormBase:C29A12.3b
GeneTree:ENSGT00700000104556 InParanoid:Q27474 NextBio:905678
Uniprot:Q27474
Length = 773
Score = 1256 (447.2 bits), Expect = 5.9e-128, P = 5.9e-128
Identities = 251/548 (45%), Positives = 357/548 (65%)
Query: 185 WEKGERVPFIFLSLVFDMISNETGRILITDIVCNMLRTVMETTPEDLVPVVYLAANKIAP 244
W KG +VP+ +L + I +G+ + D + V++ +P+DL VY++ N++ P
Sbjct: 13 WAKGSKVPYKEFALTLEKIEELSGKKKV-DELAQFFTKVLDFSPDDLTACVYMSVNQLGP 71
Query: 245 AHEGLELGIGDASIIKALAEACGRTESHVKKQYQEMGDLGLVAKASRSSQSMMRKPDPLT 304
++EGLELG+ + S+IKA+A+A GRTE +K+ + GDLG VA+ SRS+Q M+ P LT
Sbjct: 72 SYEGLELGVAENSLIKAVAKATGRTEGKIKEDLRAKGDLGTVAQQSRSNQKMLAVPKALT 131
Query: 305 ITKVFDTFRLIAKEAGKDSQEKKKNRIKALLVAATDCEPQYLIRLLQSKLRIGLAEQTLL 364
+ VF+ IAK +G + KK + I ALL+A E ++L+R+L K+RIGL EQ++L
Sbjct: 132 VPTVFNKLTEIAKLSGTSAMNKKVDAISALLIACQGIEARFLVRMLAGKMRIGLGEQSVL 191
Query: 365 AALGQAAVYNE-QHSKPPPNIQSPLEEA-AKIVKQVFSVLPVYEKIVPALLTDGVWNLSN 422
+ALG A ++ K + L++A K VK + P Y +++ LT+GV L
Sbjct: 192 SALGHAFTLSKITDQKVRGDKLDSLKDANVKRVKTAYCECPNYNRLIEVALTEGVEALVE 251
Query: 423 TCSFTPGIPIGPMLAKPTKGVSEIVNKFQDMEFTCEYKYDGERAQIHYLEDGSVEIYSRN 482
C +PGIP+ PMLA PTKG+ EI+ +F++ TCE+KYDGER QIH EDG + IYSRN
Sbjct: 252 KCKLSPGIPLKPMLAHPTKGIDEIMRRFRNQTMTCEWKYDGERGQIHKREDGQIFIYSRN 311
Query: 483 AERNTGKFPDVVLAVSRLKKPSVRSFVLDCEIVAYDREKQKILPFQTLSTRARKNVSLSD 542
E NT K+PD++ +S V SF++D E+VA D E ILPFQ LSTR RKN + D
Sbjct: 312 QENNTTKYPDIIEKISSCIGDGVTSFIVDAEVVAID-EAGLILPFQVLSTRKRKNAT-DD 369
Query: 543 IKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKF 602
V V ++ FD+LY NG+PL+++ LR RRE L +F++ G F FAT++ + D DEI F
Sbjct: 370 NGVKVVVFLFDLLYFNGEPLVRKPLRKRRELLRTNFKKIDGSFYFATSVDTNDTDEINSF 429
Query: 603 LDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGK 662
D AV CEGL+IKT+D +ATYE S+RS +WLK+KKDY++ +GD+LDLV + A+ G GK
Sbjct: 430 FDEAVQNKCEGLMIKTLDTEATYEISRRSHSWLKMKKDYVDGVGDTLDLVVMGAYSGVGK 489
Query: 663 RTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTI 722
RTGVYG +LL CY+ EE++S+CKIGTGF++ L E+ L+ K I K YY+F T+
Sbjct: 490 RTGVYGGYLLGCYNPTTEEYESVCKIGTGFTDEDLAEQYKILQDKKIDKSPSYYQFDHTL 549
Query: 723 SPDVWFEP 730
PD F P
Sbjct: 550 KPDDTFSP 557
>UNIPROTKB|Q7RPC6 [details] [associations]
symbol:PY01533 "DNA ligase" species:73239 "Plasmodium
yoelii yoelii" [GO:0003910 "DNA ligase (ATP) activity"
evidence=IBA] [GO:0005634 "nucleus" evidence=IBA] [GO:0005694
"chromosome" evidence=IBA] [GO:0005739 "mitochondrion"
evidence=IBA] [GO:0006266 "DNA ligation" evidence=IBA] [GO:0006273
"lagging strand elongation" evidence=IBA] [GO:0006289
"nucleotide-excision repair" evidence=IBA] InterPro:IPR000977
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679
PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005739
GO:GO:0005524 GO:GO:0005634 GO:GO:0005694 GO:GO:0003677
GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0006289 GO:GO:0006273 eggNOG:COG1793 KO:K10747 GO:GO:0003910
GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 EMBL:AABL01000407 RefSeq:XP_729309.1
ProteinModelPortal:Q7RPC6 STRING:Q7RPC6 GeneID:3801864
KEGG:pyo:PY01533 EuPathDB:PlasmoDB:PY01533 Uniprot:Q7RPC6
Length = 826
Score = 911 (325.7 bits), Expect = 5.7e-124, Sum P(2) = 5.7e-124
Identities = 166/338 (49%), Positives = 238/338 (70%)
Query: 393 KIVKQVFSVLPVYEKIVPALLTDGVWN-LSNTCSFTPGIPIGPMLAKPTKGVSEIVNKFQ 451
K VK LP E I+ LL+ N L C+ G+P+ PMLAKPTKG+ E++++F
Sbjct: 408 KSVKSALCELPNIEMIIQNLLSGDDMNVLMKKCTVKTGVPVQPMLAKPTKGIQEVLDRFN 467
Query: 452 DMEFTCEYKYDGERAQIHYLEDGSVEIYSRNAERNTGKFPDVVLAVSRLKKPSVRSFVLD 511
++ FTCEYKYDGERAQIHY++ +++I+SRN E T K+PDV+ V P V ++D
Sbjct: 468 NVTFTCEYKYDGERAQIHYIDKDNIKIFSRNLETMTEKYPDVIQIVKDQIMPGVTESIID 527
Query: 512 CEIVAYDREKQKILPFQTLSTRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRR 571
E+VAYD E +KILPFQ L+TR RK+V + +IKV +C++ FD++ NG P+++E L +RR
Sbjct: 528 SEVVAYDIENKKILPFQILTTRKRKDVDIENIKVKICLFPFDLICCNGVPVIKEPLEIRR 587
Query: 572 EHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRS 631
+ LY + G ++AT ++D+I FL A++ +CEGL++KT+ +A+YEPS+RS
Sbjct: 588 KLLYSLLRCKEGVLEYATHSEMNNIDDIDIFLQDAIENNCEGLMVKTLLDNASYEPSRRS 647
Query: 632 LNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTG 691
LNWLK+KKDYIE + DS+DLVPIA ++G+GKR+GVYGAF+LA Y+S E FQ++CK GTG
Sbjct: 648 LNWLKVKKDYIEGLSDSVDLVPIAGYYGKGKRSGVYGAFVLAAYNSETENFQTVCKAGTG 707
Query: 692 FSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFE 729
FS+ +L SL K+IP + YY +D ++PDVWF+
Sbjct: 708 FSDEILNALHESLSDKIIPNKKSYYEVSDKLNPDVWFD 745
Score = 328 (120.5 bits), Expect = 5.7e-124, Sum P(2) = 5.7e-124
Identities = 95/291 (32%), Positives = 147/291 (50%)
Query: 107 KIQEVAEEPSNDLVKPISNQIDNPIDSEKESQPTPPSPKKRKVNVNSVSAKEKIAELKSN 166
KI+E + N D+ ++K KK + V EKI++L S
Sbjct: 10 KIEESHVKSEEKEASKRKNTNDDGAKTKKSKVKNENEIKKGSLFNCKVYEDEKISDLSSP 69
Query: 167 IVLLKKKAGEFDPKMVACWEKG-------ERVPFIFLSLVFDMISNETG-----RILITD 214
K FD + EK + + F FL+ F+ I G + +
Sbjct: 70 ----KFNPANFDISNLCLSEKDKIKHKFKDSLLFTFLTNTFNQIEELKGSGAGSKKNVAI 125
Query: 215 IVCNMLRTVMETTPEDLVPVVYLAANKIAPAHEGLELGIGDASIIKALAEACGRTESHVK 274
I+ N+ R ++ +P DL+P VY+ NK+AP ++ +E G+G+A I+K ++EA RTE+ +K
Sbjct: 126 ILSNVFRVLIYYSPNDLIPAVYITLNKVAPDYQNVEAGVGEALILKTMSEAYSRTEASIK 185
Query: 275 KQYQEMGDLGLVAKASRSSQSMMRKPDP-LTITKVFDTFRLIAKEAGKDSQEKKKNRIKA 333
K Q++ DLG++A+ S S + P P LTI VF+ + I +G +SQ+KK+ IK
Sbjct: 186 KDLQQIEDLGIIAE-SCSCKMRTIFPLPRLTIQSVFNELKSIPNISGSNSQQKKREVIKK 244
Query: 334 LLVAATDCEPQYLIRLLQSKLRIGLAEQTLLAALGQAAVYNEQHSKPPPNI 384
LLV+A E +Y++R LQ +LRIG+ T+L AL A V P NI
Sbjct: 245 LLVSAKTSEAKYIVRFLQQRLRIGVNSATVLQALAYAFVLTRPEI--PENI 293
Score = 41 (19.5 bits), Expect = 1.1e-93, Sum P(2) = 1.1e-93
Identities = 9/35 (25%), Positives = 19/35 (54%)
Query: 249 LELGIGDASIIKALAEACGRTESHVKKQYQEMGDL 283
L +G+ A++++ALA A T + + + G +
Sbjct: 265 LRIGVNSATVLQALAYAFVLTRPEIPENIIKDGKM 299
>GENEDB_PFALCIPARUM|MAL13P1.22 [details] [associations]
symbol:MAL13P1.22 "DNA ligase 1" species:5833
"Plasmodium falciparum" [GO:0005657 "replication fork"
evidence=ISS] [GO:0006266 "DNA ligation" evidence=ISS] [GO:0006273
"lagging strand elongation" evidence=ISS] [GO:0020011 "apicoplast"
evidence=ISS] InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005524 GO:GO:0003677
GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0006266 GO:GO:0005657 EMBL:AL844509 GenomeReviews:AL844509_GR
GO:GO:0006273 HOGENOM:HOG000036006 KO:K10747 GO:GO:0003910
GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 GO:GO:0020011 OMA:ETICNIG RefSeq:XP_001349768.1
ProteinModelPortal:Q8IES4 EnsemblProtists:MAL13P1.22:mRNA
GeneID:813777 KEGG:pfa:MAL13P1.22 EuPathDB:PlasmoDB:PF3D7_1304100
ProtClustDB:CLSZ2432498 Uniprot:Q8IES4
Length = 912
Score = 903 (322.9 bits), Expect = 9.4e-122, Sum P(2) = 9.4e-122
Identities = 165/338 (48%), Positives = 238/338 (70%)
Query: 393 KIVKQVFSVLPVYEKIVPALLT-DGVWNLSNTCSFTPGIPIGPMLAKPTKGVSEIVNKFQ 451
K VK LP E I+ LL D + LS C+ GIP+ PMLAKPTKGV E++++F
Sbjct: 494 KSVKSALCELPNIEIIIQNLLNGDDMNTLSKKCTVKTGIPVQPMLAKPTKGVQEVLDRFN 553
Query: 452 DMEFTCEYKYDGERAQIHYLEDGSVEIYSRNAERNTGKFPDVVLAVSRLKKPSVRSFVLD 511
++ FTCEYKYDGERAQIHY++ +++I+SRN E T K+PDV+ + +V+ ++D
Sbjct: 554 NVTFTCEYKYDGERAQIHYIDKDNIKIFSRNLETMTEKYPDVIQIIKDQIGENVKECIID 613
Query: 512 CEIVAYDREKQKILPFQTLSTRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRR 571
E+VAYD KILPFQ L+TR RK+V + +IKV VC++ FD++ NG P+++E L VRR
Sbjct: 614 SEVVAYDIVNNKILPFQVLTTRKRKDVDIENIKVKVCLFPFDLICCNGIPVIKEPLAVRR 673
Query: 572 EHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRS 631
+ LY + + G +AT ++++I FL A++ +CEGL++KT+ +A+YEPS+RS
Sbjct: 674 KLLYSLLKSKDGVLSYATHSEMNNIEDIDMFLQDAIENNCEGLMVKTLVENASYEPSRRS 733
Query: 632 LNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTG 691
LNWLK+KKDY+E + DS+DLVPIA ++G+GKR+GVYGAF+LA Y+S E FQ++CK GTG
Sbjct: 734 LNWLKVKKDYVEGLSDSVDLVPIAGYYGKGKRSGVYGAFVLAAYNSETENFQTVCKAGTG 793
Query: 692 FSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFE 729
FS+ +L +L K+IP + YY +D ++PDVWF+
Sbjct: 794 FSDEILSTLYETLSEKIIPNKKSYYEVSDKLNPDVWFD 831
Score = 315 (115.9 bits), Expect = 9.4e-122, Sum P(2) = 9.4e-122
Identities = 92/286 (32%), Positives = 151/286 (52%)
Query: 98 KTTNSVVGEKIQEVAEEPSNDLVKPISNQIDNPIDSEKESQPTPPSPKKRKVNV-NSVSA 156
KT + EK + EE D K + +I N K ++ + +K ++ N V
Sbjct: 79 KTKENETFEKGEVKEEEEEKD--KNVKRKIINESSKNKRAKVKNENDVIKKGSLFNCVVR 136
Query: 157 K-EKIAELKS---NIVLLKKKAGEFDPKMVACWEKGERVPFIFLSLVFDMIS----NETG 208
+ EK+ +L S N V K + + + F FL+ F+ I + TG
Sbjct: 137 EDEKVNDLSSPKFNPVHFNINDLYLSEKDKEKHKFKDSLLFTFLTNAFNQIEELKGSGTG 196
Query: 209 -RILITDIVCNMLRTVMETTPEDLVPVVYLAANKIAPAHEGLELGIGDASIIKALAEACG 267
+ ++ I+ N+ R ++ +P DL+P VY+ NK+AP + +E G+G+A I+K ++EA
Sbjct: 197 SKKNVSIILSNIFRVLIYYSPNDLIPAVYITLNKVAPDYLNVEAGVGEALILKTMSEAYS 256
Query: 268 RTESHVKKQYQEMGDLGLVAK-ASRSSQSMMRKPDPLTITKVFDTFRLIAKEAGKDSQEK 326
RTES +KK Q++ DLG++A+ S +++ P LTI VF + I G +SQ+K
Sbjct: 257 RTESSIKKDLQQIEDLGIIAENCSCKMRTIFPLPR-LTIQSVFHELKSIPNLIGSNSQQK 315
Query: 327 KKNRIKALLVAATDCEPQYLIRLLQSKLRIGLAEQTLLAALGQAAV 372
K+ IK LLV+A E +Y++R LQ +LRIG+ T++ AL A +
Sbjct: 316 KREVIKKLLVSAKTSEAKYIVRFLQQRLRIGVNSATVVQALSYAFI 361
>UNIPROTKB|Q8IES4 [details] [associations]
symbol:PfLigI "DNA ligase" species:36329 "Plasmodium
falciparum 3D7" [GO:0005657 "replication fork" evidence=ISS]
[GO:0006266 "DNA ligation" evidence=ISS] [GO:0006273 "lagging
strand elongation" evidence=ISS] [GO:0020011 "apicoplast"
evidence=ISS] InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005524 GO:GO:0003677
GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0006266 GO:GO:0005657 EMBL:AL844509 GenomeReviews:AL844509_GR
GO:GO:0006273 HOGENOM:HOG000036006 KO:K10747 GO:GO:0003910
GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 GO:GO:0020011 OMA:ETICNIG RefSeq:XP_001349768.1
ProteinModelPortal:Q8IES4 EnsemblProtists:MAL13P1.22:mRNA
GeneID:813777 KEGG:pfa:MAL13P1.22 EuPathDB:PlasmoDB:PF3D7_1304100
ProtClustDB:CLSZ2432498 Uniprot:Q8IES4
Length = 912
Score = 903 (322.9 bits), Expect = 9.4e-122, Sum P(2) = 9.4e-122
Identities = 165/338 (48%), Positives = 238/338 (70%)
Query: 393 KIVKQVFSVLPVYEKIVPALLT-DGVWNLSNTCSFTPGIPIGPMLAKPTKGVSEIVNKFQ 451
K VK LP E I+ LL D + LS C+ GIP+ PMLAKPTKGV E++++F
Sbjct: 494 KSVKSALCELPNIEIIIQNLLNGDDMNTLSKKCTVKTGIPVQPMLAKPTKGVQEVLDRFN 553
Query: 452 DMEFTCEYKYDGERAQIHYLEDGSVEIYSRNAERNTGKFPDVVLAVSRLKKPSVRSFVLD 511
++ FTCEYKYDGERAQIHY++ +++I+SRN E T K+PDV+ + +V+ ++D
Sbjct: 554 NVTFTCEYKYDGERAQIHYIDKDNIKIFSRNLETMTEKYPDVIQIIKDQIGENVKECIID 613
Query: 512 CEIVAYDREKQKILPFQTLSTRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRR 571
E+VAYD KILPFQ L+TR RK+V + +IKV VC++ FD++ NG P+++E L VRR
Sbjct: 614 SEVVAYDIVNNKILPFQVLTTRKRKDVDIENIKVKVCLFPFDLICCNGIPVIKEPLAVRR 673
Query: 572 EHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRS 631
+ LY + + G +AT ++++I FL A++ +CEGL++KT+ +A+YEPS+RS
Sbjct: 674 KLLYSLLKSKDGVLSYATHSEMNNIEDIDMFLQDAIENNCEGLMVKTLVENASYEPSRRS 733
Query: 632 LNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTG 691
LNWLK+KKDY+E + DS+DLVPIA ++G+GKR+GVYGAF+LA Y+S E FQ++CK GTG
Sbjct: 734 LNWLKVKKDYVEGLSDSVDLVPIAGYYGKGKRSGVYGAFVLAAYNSETENFQTVCKAGTG 793
Query: 692 FSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFE 729
FS+ +L +L K+IP + YY +D ++PDVWF+
Sbjct: 794 FSDEILSTLYETLSEKIIPNKKSYYEVSDKLNPDVWFD 831
Score = 315 (115.9 bits), Expect = 9.4e-122, Sum P(2) = 9.4e-122
Identities = 92/286 (32%), Positives = 151/286 (52%)
Query: 98 KTTNSVVGEKIQEVAEEPSNDLVKPISNQIDNPIDSEKESQPTPPSPKKRKVNV-NSVSA 156
KT + EK + EE D K + +I N K ++ + +K ++ N V
Sbjct: 79 KTKENETFEKGEVKEEEEEKD--KNVKRKIINESSKNKRAKVKNENDVIKKGSLFNCVVR 136
Query: 157 K-EKIAELKS---NIVLLKKKAGEFDPKMVACWEKGERVPFIFLSLVFDMIS----NETG 208
+ EK+ +L S N V K + + + F FL+ F+ I + TG
Sbjct: 137 EDEKVNDLSSPKFNPVHFNINDLYLSEKDKEKHKFKDSLLFTFLTNAFNQIEELKGSGTG 196
Query: 209 -RILITDIVCNMLRTVMETTPEDLVPVVYLAANKIAPAHEGLELGIGDASIIKALAEACG 267
+ ++ I+ N+ R ++ +P DL+P VY+ NK+AP + +E G+G+A I+K ++EA
Sbjct: 197 SKKNVSIILSNIFRVLIYYSPNDLIPAVYITLNKVAPDYLNVEAGVGEALILKTMSEAYS 256
Query: 268 RTESHVKKQYQEMGDLGLVAK-ASRSSQSMMRKPDPLTITKVFDTFRLIAKEAGKDSQEK 326
RTES +KK Q++ DLG++A+ S +++ P LTI VF + I G +SQ+K
Sbjct: 257 RTESSIKKDLQQIEDLGIIAENCSCKMRTIFPLPR-LTIQSVFHELKSIPNLIGSNSQQK 315
Query: 327 KKNRIKALLVAATDCEPQYLIRLLQSKLRIGLAEQTLLAALGQAAV 372
K+ IK LLV+A E +Y++R LQ +LRIG+ T++ AL A +
Sbjct: 316 KREVIKKLLVSAKTSEAKYIVRFLQQRLRIGVNSATVVQALSYAFI 361
>POMBASE|SPBC713.06 [details] [associations]
symbol:adl1 "DNA ligase (predicted)" species:4896
"Schizosaccharomyces pombe" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003910 "DNA ligase (ATP) activity" evidence=ISM] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0007165 "signal transduction"
evidence=IEA] [GO:0051103 "DNA ligation involved in DNA repair"
evidence=IEA] [GO:0071897 "DNA biosynthetic process" evidence=IC]
InterPro:IPR000014 InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 SMART:SM00091 PomBase:SPBC713.06
GO:GO:0005524 GO:GO:0005634 GO:GO:0007165 GO:GO:0003677
GO:GO:0006260 EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
eggNOG:COG1793 HOGENOM:HOG000036006 KO:K10747 GO:GO:0003910
GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 HSSP:P18858 RefSeq:NP_595345.1
ProteinModelPortal:Q9C1W9 STRING:Q9C1W9 EnsemblFungi:SPBC713.06.1
GeneID:2541111 KEGG:spo:SPBC713.06 OMA:GAVKTTM OrthoDB:EOG4SFDF2
NextBio:20802224 GO:GO:0071897 Uniprot:Q9C1W9
Length = 774
Score = 958 (342.3 bits), Expect = 2.2e-96, P = 2.2e-96
Identities = 222/643 (34%), Positives = 352/643 (54%)
Query: 106 EKIQEVAEEPSNDLVKPISNQIDNPIDSEKESQPTPPSPKKRKVNVNSVSAKEKI---AE 162
EK+ + P + N + D KE+ T K + +SV+ I A
Sbjct: 78 EKLPKDVIIPEEEYHTDTFNVVKESNDKPKENLVTSEECKASFFSTDSVNKDSTIDYDAL 137
Query: 163 LKSNIVLLKKKAGEFDPKMVACWEKGERVPFIFLSLVFDMISNETGRILITDIVCNMLRT 222
K + +K F K + + L+ F +IS+ RI I ++ N L T
Sbjct: 138 QKDPLTYVKSCRARFVSKDTKSFS------YSSLANTFSLISSTKSRIRIVTLLTNFLLT 191
Query: 223 VMETTPEDLVPVVYLAANKIAPAHEGLELGIGDASIIKALAEACGRTESHVKKQYQEMGD 282
++ P+ L+ V+L N IAP G LG+G A KAL E CG T S +K + + GD
Sbjct: 192 LLYADPDSLIATVWLCTNSIAPNFYGKNLGVGPAMYSKALKEVCGITASALKNLWNKYGD 251
Query: 283 LGLVAKASRSSQSMMRKPDPLTITKVFDTFRLIAKEAGKDSQEKKKNRIKALLVAATDCE 342
G VA ++ S + +P+PLTI KV+ T IA G +Q +K K LL+++ E
Sbjct: 252 PGDVAFEAKVSVRTLSRPEPLTIKKVYSTLLKIADSNGNGAQNRKLELTKFLLISSNAEE 311
Query: 343 PQYLIRLLQSKLRIGLAEQTLLAALGQAA-VYNEQH---SKPPPNIQSPLEEAAKIVKQV 398
+Y+ R + LRIG + T+LA+L +A +++ Q+ + ++Q + +IVKQ
Sbjct: 312 VRYIGRSIMQNLRIGAVQNTMLASLSKAFFIFDNQNEIFNFNSDSLQQQFRQGEEIVKQS 371
Query: 399 FSVLPVYEKIVPALLTDGVWNLSNTCSFTPGIPIGPMLAKPTKGVSEIVNKFQDMEFTCE 458
F +P Y +V LL +G+ NL + S PGIP+ PML TK + ++ + D F+CE
Sbjct: 372 FFQVPDYNILVATLLREGIENLKDNMSIRPGIPVKPMLGSITKNLQHMLERLTDHNFSCE 431
Query: 459 YKYDGERAQIHYLEDGSVEIYSRNAERNTGKFPDVVLAVSRLKKPSVRSFVLDCEIVAYD 518
+KYDG+RAQIH G+++I+SR+ E TG+FPDV+ V++L F+++ E+VA D
Sbjct: 432 FKYDGQRAQIHCDRLGNIKIFSRHLEEITGRFPDVI-EVAQLALKHSCDFIIEGELVAID 490
Query: 519 REKQKILPFQTLSTRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSF 578
+ +IL FQ LSTR RK V+++DI +DVC++ FDI++ +G+ LQ L RR ++ F
Sbjct: 491 KSNGQILDFQKLSTRERKKVTVADITIDVCVFVFDIMFCDGKSCLQMPLIERRRMFFEHF 550
Query: 579 EEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRD-----ATYEPSKRSLN 633
P FQF ++L + + IQ+F A+ CEGL++K ++ +TYEP KR
Sbjct: 551 NLIPNRFQFVSSLETNEEQSIQEFFSLAITNKCEGLMVKVLNGTNSKFPSTYEPDKRGEG 610
Query: 634 WLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFS 693
W+K+K+DY + +SLDLVPI A++G G++ G + LLA Y+ + ++++CK +GFS
Sbjct: 611 WIKVKQDYDDEF-ESLDLVPIGAWYGNGRKAGWFSPILLAVYNPDTGAYEAVCKCMSGFS 669
Query: 694 EAMLEERSS--SLRSKVIPKPRPYYRFADT--ISPDVWFEPTE 732
+ +E + SL S +P Y F +T ++P ++F P E
Sbjct: 670 DQFYKELTQKYSLESGN-SSLKPIYNFCETGKVTPQIYFAPQE 711
>UNIPROTKB|G4NHG0 [details] [associations]
symbol:MGG_03854 "DNA ligase" species:242507 "Magnaporthe
oryzae 70-15" [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000977 InterPro:IPR012308 InterPro:IPR012309
InterPro:IPR012310 InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0006310 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 EMBL:CM001236 KO:K10747
GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 RefSeq:XP_003720037.1 ProteinModelPortal:G4NHG0
EnsemblFungi:MGG_03854T0 GeneID:2677295 KEGG:mgr:MGG_03854
Uniprot:G4NHG0
Length = 859
Score = 734 (263.4 bits), Expect = 1.0e-90, Sum P(2) = 1.0e-90
Identities = 172/460 (37%), Positives = 261/460 (56%)
Query: 187 KGERVPFIFLSLVFDMISNETGRILITDIVCNMLRTVMETTPEDLVPVVYLAANKIAPAH 246
+G + L+ F ++S T RI I D + N LR ++E P+ L+P V+LA N I+P +
Sbjct: 163 EGGNASYAILTRCFVLVSATTSRIKIVDTLVNCLRILIEADPDSLLPAVWLATNSISPPY 222
Query: 247 EGLELGIGDASIIKALAEACGRTESHVKKQYQEMGDLGLVAKASRSSQSM-MRKPDPLTI 305
LELG+G ++I KAL + CG +K Y + GD G VA ++ Q+ +RKP PLTI
Sbjct: 223 ISLELGLGGSAISKALKQVCGLDSRSLKAIYDKHGDPGDVAFEAKKKQNFTLRKPKPLTI 282
Query: 306 TKVFDTFRLIAKEAGKDSQEKKKNRIKALLVAATDCEP-QYLIRLLQSKLRIGLAEQTLL 364
VF + IA+ G+ S K+ + LL A E ++++R L LRIG + T+L
Sbjct: 283 KGVFQSLVKIAQSQGQGSVNVKQQIVDRLLQDARGGEESRFIVRTLCQHLRIGAVKTTML 342
Query: 365 AALGQAAVYNEQH-----SKPPPNI-QSPLEEAAKI-------VKQVFSVLPVYEKIVPA 411
AL +A + ++ + ++ + + EE A++ VK F+ P Y +VP
Sbjct: 343 IALSRAFLLSKPYGADFETRDTKELARLKKEELAEVWARGEELVKACFARRPNYNDLVPV 402
Query: 412 LLTDGVWN-LSNTCSFTPGIPIGPMLAKPTKGVSEIVNKFQDMEFTCEYKYDGERAQIHY 470
LL G+ + L C IP+ PML T+ +SE++ K Q +F CE+KYDG+RAQ+H
Sbjct: 403 LLEIGITDELLVRCGLAIHIPLRPMLGSITRDLSEMLTKLQGRDFACEFKYDGQRAQVHC 462
Query: 471 LEDGSVEIYSRNAERNTGKFPDVVLAVSRLKKPSVRSFVLDCEIVAYDREKQKILPFQTL 530
E+G V I+SR+ E T K+PD+V + +++ V SF+L+ E+VA D + FQTL
Sbjct: 463 DENGKVSIFSRHLELMTDKYPDLVALIPKIRGEGVSSFILEGEVVAVDSTTGDLKNFQTL 522
Query: 531 STRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFFQFATT 590
+ RARK+V + I V+VC++AFD++ NGQPLL R RRE L F E P F + +
Sbjct: 523 TNRARKDVEIGSITVNVCLFAFDLMLLNGQPLLNRPFRERRELLKSLFIEVPHNFTWVKS 582
Query: 591 L--TSIDLDEIQKFLDAAVDASCEGLIIKTMDR--DATYE 626
+ TS D + + +F AA D CEGL++K +D D Y+
Sbjct: 583 IDATSQDSEAVLEFFKAATDQKCEGLMVKILDNLPDIAYK 622
Score = 327 (120.2 bits), Expect = 8.6e-41, Sum P(2) = 8.6e-41
Identities = 86/255 (33%), Positives = 135/255 (52%)
Query: 128 DNPIDSEKESQPTPPSPKKRKVNVNSV-SAKEKIAE-LKSNIVLLKKKAGEFDPKMVACW 185
DNP+ T S K + + SV SA++ I+ + + L E+ K+ A W
Sbjct: 101 DNPLADGSALTVTANSTKTNTLTLQSVASAEDTISSVIPLDESPLAFNVSEYITKLKAHW 160
Query: 186 E-KGERVPFIFLSLVFDMISNETGRILITDIVCNMLRTVMETTPEDLVPVVYLAANKIAP 244
+G + L+ F ++S T RI I D + N LR ++E P+ L+P V+LA N I+P
Sbjct: 161 NAEGGNASYAILTRCFVLVSATTSRIKIVDTLVNCLRILIEADPDSLLPAVWLATNSISP 220
Query: 245 AHEGLELGIGDASIIKALAEACGRTESHVKKQYQEMGDLGLVAKASRSSQSM-MRKPDPL 303
+ LELG+G ++I KAL + CG +K Y + GD G VA ++ Q+ +RKP PL
Sbjct: 221 PYISLELGLGGSAISKALKQVCGLDSRSLKAIYDKHGDPGDVAFEAKKKQNFTLRKPKPL 280
Query: 304 TITKVFDTFRLIAKEAGKDSQEKKKNRIKALLVAATDCEP-QYLIRLLQSKLRIGLAEQT 362
TI VF + IA+ G+ S K+ + LL A E ++++R L LRIG + T
Sbjct: 281 TIKGVFQSLVKIAQSQGQGSVNVKQQIVDRLLQDARGGEESRFIVRTLCQHLRIGAVKTT 340
Query: 363 LLAALGQAAVYNEQH 377
+L AL +A + ++ +
Sbjct: 341 MLIALSRAFLLSKPY 355
Score = 190 (71.9 bits), Expect = 1.0e-90, Sum P(2) = 1.0e-90
Identities = 44/117 (37%), Positives = 65/117 (55%)
Query: 623 ATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEF 682
ATYEP KR +WLK+KKDY +S D+LDL+PIAA+HG+G++ + LLA +
Sbjct: 667 ATYEPDKRLDSWLKVKKDY-DSTFDTLDLIPIAAWHGQGRKAKWWSPILLAVRNEATGSL 725
Query: 683 QSICKIGTGFSEAMLEERSSSLRS-------KVIPKPRPYYRFADTISPDVWFEPTE 732
+++ K +GF++A +E + + RP + PDVWFEP E
Sbjct: 726 EAVTKCMSGFTDAFYKENRAFYNDGEEDGERQNTRARRPAFVEYSGPEPDVWFEPQE 782
>ASPGD|ASPL0000077573 [details] [associations]
symbol:AN4883 species:162425 "Emericella nidulans"
[GO:0003910 "DNA ligase (ATP) activity" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000977 InterPro:IPR012308 InterPro:IPR012309
InterPro:IPR012310 InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005524
GO:GO:0005634 GO:GO:0005694 GO:GO:0003677 GO:GO:0006310
EMBL:BN001303 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
EMBL:AACD01000084 GO:GO:0006289 GO:GO:0006273 eggNOG:COG1793
HOGENOM:HOG000036006 KO:K10747 GO:GO:0003910 GO:GO:0051103
Gene3D:1.10.3260.10 SUPFAM:SSF117018 TIGRFAMs:TIGR00574 OMA:GAVKTTM
OrthoDB:EOG4SFDF2 RefSeq:XP_662487.1 ProteinModelPortal:Q5B3J7
EnsemblFungi:CADANIAT00005522 GeneID:2872686 KEGG:ani:AN4883.2
Uniprot:Q5B3J7
Length = 816
Score = 734 (263.4 bits), Expect = 1.7e-90, Sum P(2) = 1.7e-90
Identities = 168/452 (37%), Positives = 255/452 (56%)
Query: 187 KGERVPFIFLSLVFDMISNETGRILITDIVCNMLRTVMETTPEDLVPVVYLAANKIAPAH 246
+G + L+ F + ++ T RI I D + N LR ++E P ++P V+LA N I+P +
Sbjct: 138 EGGNASYALLTRAFVLANSTTSRIKIVDTLVNFLRVLIEGDPSSVLPAVWLATNSISPPY 197
Query: 247 EGLELGIGDASIIKALAEACGRTESHVKKQYQEMGDLGLVAKASRSSQSM-MRKPDPLTI 305
LELG+G +SI KA + G +K Y +GD G VA ++ QS + KP PL+I
Sbjct: 198 HELELGLGGSSISKAFKKIYGLNSQGLKSLYDRLGDAGDVAFEAKKRQSFTLIKPKPLSI 257
Query: 306 TKVFDTFRLIAKEAGKDSQEKKKNRIKALLVAATDCEP-QYLIRLLQSKLRIGLAEQTLL 364
V+ + IA G SQE K+ ++ LL E +Y++R L LRIG + T+L
Sbjct: 258 KGVYQSLIKIAMSKGSGSQELKQRIVEKLLQDTRGAEESRYIVRTLVQNLRIGAVKTTML 317
Query: 365 AALGQAAVYNEQ-------HSK------PPPNIQSPLEEAAKIVKQVFSVLPVYEKIVPA 411
AL +A + ++ HS+ + A ++VK ++ P Y +VP
Sbjct: 318 IALARAFLVSKPDNATFTVHSQHELARLKKEELAEIYSSAEELVKASYARHPNYNDLVPC 377
Query: 412 LLTDGVWN-LSNTCSFTPGIPIGPMLAKPTKGVSEIVNKFQDMEFTCEYKYDGERAQIHY 470
LL GV L C IP+ PML T+ +SE++ K Q +FTCE+KYDG+RAQ+H
Sbjct: 378 LLEIGVTEELLLRCGLQLHIPLMPMLGSITRDLSEMLTKLQGRDFTCEFKYDGQRAQVHC 437
Query: 471 LEDGSVEIYSRNAERNTGKFPDVVLAVSRLKKPSVRSFVLDCEIVAYDREKQKILPFQTL 530
E G V I+SR+ E T K+PD+V V +++ V SF+L+ E+VA D+ + + PFQ L
Sbjct: 438 DEAGKVSIFSRHLEEMTEKYPDLVSLVPQIRGEGVSSFILEGEVVAVDQNGE-LQPFQIL 496
Query: 531 STRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFFQFATT 590
+ RA+KNV + +IK++VC++AFD++Y NG PLL+ LR RRE L F E P F + +
Sbjct: 497 TNRAKKNVDIGEIKINVCLFAFDLMYLNGAPLLERSLRERRELLRSLFMEIPNRFTWVKS 556
Query: 591 L--TSIDLDEIQKFLDAAVDASCEGLIIKTMD 620
L TS D + + F +A + CEG+++K +D
Sbjct: 557 LDATSADSEAVLDFFKSATENKCEGIMVKVLD 588
Score = 188 (71.2 bits), Expect = 1.7e-90, Sum P(2) = 1.7e-90
Identities = 42/113 (37%), Positives = 63/113 (55%)
Query: 623 ATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEF 682
++YEP KR +WLK+KKDY S ++LDL+P+A +HG G++ + LLA +
Sbjct: 625 SSYEPDKRLESWLKVKKDYSAS-SETLDLIPVAGWHGNGRKAKWWSPILLAVRNPETGGL 683
Query: 683 QSICKIGTGFSEAMLE---ERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTE 732
Q++ K +GFS+ + E+ VI +P Y + PDVWFEP E
Sbjct: 684 QAVTKCMSGFSDKFYQANKEKYEEGSPNVISRPS-YVEYNG--EPDVWFEPQE 733
>UNIPROTKB|Q5B3J7 [details] [associations]
symbol:AN4883.2 "DNA ligase" species:227321 "Aspergillus
nidulans FGSC A4" [GO:0003910 "DNA ligase (ATP) activity"
evidence=IBA] [GO:0005634 "nucleus" evidence=IBA] [GO:0005694
"chromosome" evidence=IBA] [GO:0006266 "DNA ligation" evidence=IBA]
[GO:0006273 "lagging strand elongation" evidence=IBA] [GO:0006289
"nucleotide-excision repair" evidence=IBA] InterPro:IPR000977
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679
PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005524 GO:GO:0005634
GO:GO:0005694 GO:GO:0003677 GO:GO:0006310 EMBL:BN001303
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
EMBL:AACD01000084 GO:GO:0006289 GO:GO:0006273 eggNOG:COG1793
HOGENOM:HOG000036006 KO:K10747 GO:GO:0003910 GO:GO:0051103
Gene3D:1.10.3260.10 SUPFAM:SSF117018 TIGRFAMs:TIGR00574 OMA:GAVKTTM
OrthoDB:EOG4SFDF2 RefSeq:XP_662487.1 ProteinModelPortal:Q5B3J7
EnsemblFungi:CADANIAT00005522 GeneID:2872686 KEGG:ani:AN4883.2
Uniprot:Q5B3J7
Length = 816
Score = 734 (263.4 bits), Expect = 1.7e-90, Sum P(2) = 1.7e-90
Identities = 168/452 (37%), Positives = 255/452 (56%)
Query: 187 KGERVPFIFLSLVFDMISNETGRILITDIVCNMLRTVMETTPEDLVPVVYLAANKIAPAH 246
+G + L+ F + ++ T RI I D + N LR ++E P ++P V+LA N I+P +
Sbjct: 138 EGGNASYALLTRAFVLANSTTSRIKIVDTLVNFLRVLIEGDPSSVLPAVWLATNSISPPY 197
Query: 247 EGLELGIGDASIIKALAEACGRTESHVKKQYQEMGDLGLVAKASRSSQSM-MRKPDPLTI 305
LELG+G +SI KA + G +K Y +GD G VA ++ QS + KP PL+I
Sbjct: 198 HELELGLGGSSISKAFKKIYGLNSQGLKSLYDRLGDAGDVAFEAKKRQSFTLIKPKPLSI 257
Query: 306 TKVFDTFRLIAKEAGKDSQEKKKNRIKALLVAATDCEP-QYLIRLLQSKLRIGLAEQTLL 364
V+ + IA G SQE K+ ++ LL E +Y++R L LRIG + T+L
Sbjct: 258 KGVYQSLIKIAMSKGSGSQELKQRIVEKLLQDTRGAEESRYIVRTLVQNLRIGAVKTTML 317
Query: 365 AALGQAAVYNEQ-------HSK------PPPNIQSPLEEAAKIVKQVFSVLPVYEKIVPA 411
AL +A + ++ HS+ + A ++VK ++ P Y +VP
Sbjct: 318 IALARAFLVSKPDNATFTVHSQHELARLKKEELAEIYSSAEELVKASYARHPNYNDLVPC 377
Query: 412 LLTDGVWN-LSNTCSFTPGIPIGPMLAKPTKGVSEIVNKFQDMEFTCEYKYDGERAQIHY 470
LL GV L C IP+ PML T+ +SE++ K Q +FTCE+KYDG+RAQ+H
Sbjct: 378 LLEIGVTEELLLRCGLQLHIPLMPMLGSITRDLSEMLTKLQGRDFTCEFKYDGQRAQVHC 437
Query: 471 LEDGSVEIYSRNAERNTGKFPDVVLAVSRLKKPSVRSFVLDCEIVAYDREKQKILPFQTL 530
E G V I+SR+ E T K+PD+V V +++ V SF+L+ E+VA D+ + + PFQ L
Sbjct: 438 DEAGKVSIFSRHLEEMTEKYPDLVSLVPQIRGEGVSSFILEGEVVAVDQNGE-LQPFQIL 496
Query: 531 STRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFFQFATT 590
+ RA+KNV + +IK++VC++AFD++Y NG PLL+ LR RRE L F E P F + +
Sbjct: 497 TNRAKKNVDIGEIKINVCLFAFDLMYLNGAPLLERSLRERRELLRSLFMEIPNRFTWVKS 556
Query: 591 L--TSIDLDEIQKFLDAAVDASCEGLIIKTMD 620
L TS D + + F +A + CEG+++K +D
Sbjct: 557 LDATSADSEAVLDFFKSATENKCEGIMVKVLD 588
Score = 188 (71.2 bits), Expect = 1.7e-90, Sum P(2) = 1.7e-90
Identities = 42/113 (37%), Positives = 63/113 (55%)
Query: 623 ATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEF 682
++YEP KR +WLK+KKDY S ++LDL+P+A +HG G++ + LLA +
Sbjct: 625 SSYEPDKRLESWLKVKKDYSAS-SETLDLIPVAGWHGNGRKAKWWSPILLAVRNPETGGL 683
Query: 683 QSICKIGTGFSEAMLE---ERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTE 732
Q++ K +GFS+ + E+ VI +P Y + PDVWFEP E
Sbjct: 684 QAVTKCMSGFSDKFYQANKEKYEEGSPNVISRPS-YVEYNG--EPDVWFEPQE 733
>UNIPROTKB|Q7S2S0 [details] [associations]
symbol:NCU09706 "DNA ligase" species:367110 "Neurospora
crassa OR74A" [GO:0003910 "DNA ligase (ATP) activity" evidence=IBA]
[GO:0005634 "nucleus" evidence=IBA] [GO:0005694 "chromosome"
evidence=IBA] [GO:0006266 "DNA ligation" evidence=IBA] [GO:0006273
"lagging strand elongation" evidence=IBA] [GO:0006289
"nucleotide-excision repair" evidence=IBA] InterPro:IPR000977
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679
PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005524 GO:GO:0005634
GO:GO:0005694 GO:GO:0003677 GO:GO:0006310 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006289 GO:GO:0006273
eggNOG:COG1793 HOGENOM:HOG000036006 KO:K10747 GO:GO:0003910
GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 OrthoDB:EOG4SFDF2 EMBL:AABX02000084
RefSeq:XP_958945.2 ProteinModelPortal:Q7S2S0
EnsemblFungi:EFNCRT00000009526 GeneID:3875111 KEGG:ncr:NCU09706
OMA:MSGFTDS Uniprot:Q7S2S0
Length = 853
Score = 488 (176.8 bits), Expect = 4.3e-71, Sum P(3) = 4.3e-71
Identities = 102/248 (41%), Positives = 155/248 (62%)
Query: 376 QHSKPPPNIQSPLEEAAKIVKQVFSVLPVYEKIVPALLTDGVWN-LSNTCSFTPGIPIGP 434
QH K + +A +IVK ++ P Y +VP LL GV L C T IP+ P
Sbjct: 316 QHLKKE-ELAEVYAKAEEIVKASYARHPDYNDLVPVLLETGVSEELLVRCGLTLHIPLRP 374
Query: 435 MLAKPTKGVSEIVNKFQDMEFTCEYKYDGERAQIHYLEDGSVEIYSRNAERNTGKFPDVV 494
ML T+ +SE++++ Q +F CEYKYDG+RAQIH + G V I+SR+ E T K+PD+V
Sbjct: 375 MLGGITRDLSEMLSRLQGRDFACEYKYDGQRAQIHCDDRGVVSIFSRHLELMTDKYPDLV 434
Query: 495 LAVSRLKKPSVRSFVLDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIKVDVCIYAFDI 554
V +++ V+SF+++ E+VA DR ++ FQTL+ RARK+V++ I +DVC++AFD+
Sbjct: 435 ALVPKIRGEDVQSFIMEGEVVAVDRATGELKNFQTLTNRARKDVAIGAITIDVCLFAFDL 494
Query: 555 LYRNGQPLLQEQLRVRREHLYDSFEEEPGFFQFATTL--TSIDLDEIQKFLDAAVDASCE 612
+Y NGQPLL R RR+ L F E P F + ++ TS + + + +F +AVD+ CE
Sbjct: 495 MYLNGQPLLNRSFRERRDMLRSLFMEIPHHFTWVKSIDATSQESEIVLEFFKSAVDSKCE 554
Query: 613 GLIIKTMD 620
G+++K +D
Sbjct: 555 GIMVKILD 562
Score = 204 (76.9 bits), Expect = 4.3e-71, Sum P(3) = 4.3e-71
Identities = 49/123 (39%), Positives = 72/123 (58%)
Query: 623 ATYEPSKRSLNWLKLKKDYI-ESIG-DSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNE 680
ATYEP KR +WLK+KKDYI S G D+LDL+PIAA+HG G++ + LLA +
Sbjct: 637 ATYEPDKRLDSWLKVKKDYIGTSAGVDTLDLIPIAAWHGTGRKAKWWSPILLAVRNEETG 696
Query: 681 EFQSICKIGTGFSEAMLE------ERSSSLRSKVIPK----PRP-YYRFADTISPDVWFE 729
+++CK +GF+++ + ++ S S PK +P + +A +PDVWFE
Sbjct: 697 SLEAVCKCMSGFTDSFYKANREVYDKDGSFSSDGEPKNVHVAKPGFVEYAGG-NPDVWFE 755
Query: 730 PTE 732
P E
Sbjct: 756 PQE 758
Score = 132 (51.5 bits), Expect = 4.3e-71, Sum P(3) = 4.3e-71
Identities = 49/170 (28%), Positives = 81/170 (47%)
Query: 94 TQTPKTTNSVVGEKIQEVAEEP-SNDLVKPISNQIDNPIDSEKESQPTPPSPK-KRKVNV 151
+ TP+ N V + + EP D V+P +N+ NP + P PK K +++
Sbjct: 82 SSTPRE-NDVRSQDVAVSTTEPVDTDGVEP-TNE-SNP--QTVTAPPKADRPKGKNTLSL 136
Query: 152 NSVSAKEKIAELKSNIVL----LKKKAGEFDPKMVACWEK-GERVPFIFLSLVFDMISNE 206
+S +A E A ++I L L ++ P++ W G + L F ++S+
Sbjct: 137 SSAAATEDQAS--ASIPLDESPLTFNPSKYIPQLQESWATDGGDASYALLIRCFVLVSST 194
Query: 207 TGRILITDIVCNMLRTVMETTPEDLVPVVYLAANKIAPAH-EGLELGIGD 255
T RI I D + N +R ++E P L+P V+LA N I+P + L +GD
Sbjct: 195 TSRIKIVDTLVNCVRLLIEGDPSSLLPAVWLATNAISPPSLKALNDKLGD 244
Score = 105 (42.0 bits), Expect = 7.0e-69, Sum P(4) = 7.0e-69
Identities = 35/106 (33%), Positives = 56/106 (52%)
Query: 254 GD-ASIIKALAEACGR-TESHVKKQYQEMGDLGLVAKASRSSQSM-MRKPDPLTITKVFD 310
GD +S++ A+ A + +K ++GD G VA ++ QS +RKP PLTI VF
Sbjct: 214 GDPSSLLPAVWLATNAISPPSLKALNDKLGDPGDVAFEAKKKQSFTLRKPKPLTIKGVFQ 273
Query: 311 TFRLIAKEAGKDSQEKKKNRIKALLVAATDCEP-QYLIRLLQSKLR 355
+ I+K G+ S + K+ + LL A E +Y++R L L+
Sbjct: 274 SLVKISKTQGQGSGDAKQRIVDKLLQDARGGEESRYVVRTLCQHLK 319
Score = 39 (18.8 bits), Expect = 7.0e-69, Sum P(4) = 7.0e-69
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 129 NPIDSEKESQPTPPSPKKRKVNVNSVSAK 157
+P+ E +SQP + +N ++ K
Sbjct: 42 SPLPKESDSQPAQQGSSEEHLNDEELARK 70
Score = 39 (18.8 bits), Expect = 0.00083, Sum P(2) = 0.00083
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 459 YKYDGERAQIHYLEDGSVEIYSRNAE 484
+ DGE +H + G VE N +
Sbjct: 726 FSSDGEPKNVHVAKPGFVEYAGGNPD 751
>UNIPROTKB|O67398 [details] [associations]
symbol:lig "Probable DNA ligase" species:224324 "Aquifex
aeolicus VF5" [GO:0003910 "DNA ligase (ATP) activity" evidence=IBA]
[GO:0005694 "chromosome" evidence=IBA] [GO:0006266 "DNA ligation"
evidence=IBA] [GO:0006273 "lagging strand elongation" evidence=IBA]
[GO:0006289 "nucleotide-excision repair" evidence=IBA]
HAMAP:MF_00407 InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
InterPro:IPR022865 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679
PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005524
GO:GO:0005694 GO:GO:0051301 GO:GO:0046872 GO:GO:0003677
GO:GO:0007049 GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0006289 GO:GO:0006273 eggNOG:COG1793
KO:K10747 OMA:AQVACLY GO:GO:0003910 GO:GO:0051103
Gene3D:1.10.3260.10 SUPFAM:SSF117018 TIGRFAMs:TIGR00574
EMBL:AE000657 PIR:D70421 RefSeq:NP_213963.1
ProteinModelPortal:O67398 SMR:O67398 GeneID:1192929
GenomeReviews:AE000657_GR KEGG:aae:aq_1394 PATRIC:20959956
HOGENOM:HOG000036008 ProtClustDB:PRK01109
BioCyc:AAEO224324:GJBH-1004-MONOMER Uniprot:O67398
Length = 584
Score = 426 (155.0 bits), Expect = 1.2e-62, Sum P(2) = 1.2e-62
Identities = 98/303 (32%), Positives = 159/303 (52%)
Query: 429 GIPIGPMLAKPTKGVSEIVNKFQDMEFTCEYKYDGERAQIHYLEDGSVEIYSRNAERNTG 488
G P+ PMLA+ I+ K + EYKYDGER Q H D ++SR E T
Sbjct: 220 GRPVRPMLAERMSSPILILRKLGG-KCGAEYKYDGERIQAHRKGD-EFYLFSRRLENITH 277
Query: 489 KFPDVVLAVSRLKKPSVRSFVLDCEIVAYDREKQKILPFQTLSTRARKNVSLSDI-KVDV 547
++PD++ LK+ F+++ E V D +I PFQ L R K V+ I K V
Sbjct: 278 QYPDLI---EFLKEAIPHDFIVELEAVVIDPASGEIRPFQELMHRKVKYVTKYHITKYPV 334
Query: 548 CIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAV 607
+ FDI+Y +G+ L + RRE L + + ++++++ F A+
Sbjct: 335 AGFLFDIIYLDGEDLTLKPYPERREILEKVVKRTDRIGLVPRKIVD-NVEDLENFFYQAI 393
Query: 608 DASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVY 667
+ CEGL+ K++ ++ Y+ KR W+K K+DY + D+LDLV + F+G+G+R G +
Sbjct: 394 EEGCEGLVCKSLAPNSIYQAGKRGFLWIKYKRDYKSVLADTLDLVVVGGFYGKGQRKGTF 453
Query: 668 GAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVW 727
G+ L+ACYD ++ F+++ K+GTGF+E ++ L + + P R + D+W
Sbjct: 454 GSLLMACYDPESDMFKTVTKVGTGFTEDDFKKLEEILMPRKLNHRHP--RVNSILEADMW 511
Query: 728 FEP 730
FEP
Sbjct: 512 FEP 514
Score = 259 (96.2 bits), Expect = 1.2e-62, Sum P(2) = 1.2e-62
Identities = 86/279 (30%), Positives = 142/279 (50%)
Query: 196 LSLVFDMISNETGRILITDIVCNMLRTVMETTPEDLVP-VVYLAANKIAPAHEGLELGIG 254
L+ ++ I T RI ++V +++ + + TP++L+ VVYL+ KIAP + GL+ G
Sbjct: 6 LAEFYERIEKTTSRI---EMVSSLVE-LFKQTPKELIDKVVYLSIGKIAPEYTGLDYNFG 61
Query: 255 DASIIKALAEACGRTESHVKKQYQEMGDLGLVAKASRSSQSMMRKPD-PLTITKVFDTFR 313
+ I+AL+ ++K+ ++ GDLG + + + + KP+ LT+ +V++
Sbjct: 62 EKLAIRALSRVLKIPALEIEKRVRQEGDLGEAGR--KLYEELGFKPEGTLTVEEVYNGLL 119
Query: 314 LIAKEAGKDSQEKKKNRIKALLVAATDCEPQYLIRLLQSKLRIGLAEQTLLAALGQA--- 370
IAK G SQE+K + +LL AT E +YL+R + +LR+G+ + T+L AL A
Sbjct: 120 NIAKAVGIGSQERKISIFASLLKKATPLEAKYLLRTITERLRLGIGDNTILEALSIAFTG 179
Query: 371 AVYNEQHSKPPPNIQSPLEEAAKIVKQVFSVLPVYEKIVPALLTDGVWNLSNTCSFTPGI 430
+ N + + N+ S L AKI+ EK + +GV + G
Sbjct: 180 SSVNREVVERAYNLTSDLGYVAKILA---------EKGL-----EGVKQVK----IQVGR 221
Query: 431 PIGPMLAKPTKGVSEIVNKFQDMEFTCEYKYDGERAQIH 469
P+ PMLA+ I+ K + EYKYDGER Q H
Sbjct: 222 PVRPMLAERMSSPILILRKLGG-KCGAEYKYDGERIQAH 259
>UNIPROTKB|A8J921 [details] [associations]
symbol:CHLREDRAFT_176829 "Predicted protein" species:3055
"Chlamydomonas reinhardtii" [GO:0003910 "DNA ligase (ATP) activity"
evidence=IBA] [GO:0005634 "nucleus" evidence=IBA] [GO:0005694
"chromosome" evidence=IBA] [GO:0006266 "DNA ligation" evidence=IBA]
[GO:0006273 "lagging strand elongation" evidence=IBA] [GO:0006289
"nucleotide-excision repair" evidence=IBA] InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 PROSITE:PS50160 GO:GO:0005524 GO:GO:0005634
GO:GO:0005694 GO:GO:0003677 GO:GO:0006310 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006289 eggNOG:COG1236
KO:K15340 InterPro:IPR011084 Pfam:PF07522 GO:GO:0006273
GO:GO:0003910 Gene3D:1.10.3260.10 SUPFAM:SSF117018 EMBL:DS496145
RefSeq:XP_001698007.1 ProteinModelPortal:A8J921
EnsemblPlants:EDO99592 GeneID:5723644 KEGG:cre:CHLREDRAFT_176829
Uniprot:A8J921
Length = 1384
Score = 367 (134.2 bits), Expect = 2.4e-58, Sum P(3) = 2.4e-58
Identities = 89/268 (33%), Positives = 144/268 (53%)
Query: 192 PFIFLSLVFDMISNETGRILITDIVCNMLRTVMETTPE---DLVPVVYLAANKIAPAHEG 248
P++ ++L +S+ T R+ I+D + NM R+V+ + DLV +YL +IAP ++
Sbjct: 618 PYLHVALCLSALSSTTKRLAISDALTNMFRSVLAAADDPGRDLVAALYLVTGRIAPEYDK 677
Query: 249 LELGIGDASIIKALAEACGRTESHVKKQYQEMGDLGLVAKASRSSQSMMRKPDPLTITKV 308
EL +G A++ AL A G + + +K+ Y+E GDLG VA A R +QS +R P PL ++
Sbjct: 678 TELNVGGATVSGALQAATGASAARLKQLYREHGDLGDVAAACRRTQSTLRNPAPLLCGRL 737
Query: 309 FDTFRLIAKEAGKDSQEKKKNRIKALLVAATDCEPQYLIRLLQSKLRIGLAEQTLLAALG 368
R +A + G+ +++ + LL A D E ++L+R L S LR+G +++LA LG
Sbjct: 738 LAALRDVAADKGQGVAARRQAVVLGLLRACRDVEVRFLVRTLISNLRVGANWRSVLAPLG 797
Query: 369 QAAVYNEQH----------SKPPPNIQSP----LEEAAKIVKQVFSVLPVYEKIVPALLT 414
+A + +++ S +QSP LE A V + + P +E +VP LL
Sbjct: 798 RAVLLHQRATAAVAAAADGSATTAAVQSPAPAELEAAGAAVLEAYHTCPNFEILVPVLLR 857
Query: 415 DGVWNLSNTCSFTPGIPIGPMLAKPTKG 442
G+ L C T G+P+ PMLA G
Sbjct: 858 HGIEGLRTRCGLTLGVPLKPMLANACAG 885
Score = 280 (103.6 bits), Expect = 2.4e-58, Sum P(3) = 2.4e-58
Identities = 56/141 (39%), Positives = 85/141 (60%)
Query: 599 IQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLK-------LKKDYIESIGDSLDL 651
+ L + + EGL++K +D + YEPS+RS W+K +K+DY E + DS+D+
Sbjct: 1085 VMDMLLQSFNTGAEGLMLKRLDGASAYEPSRRSEAWIKASSECVCVKRDYCEGLRDSVDV 1144
Query: 652 VPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPK 711
VPI A++G+G++ + FLLA +D EEFQS+C+ +GFS+ L + +IP
Sbjct: 1145 VPIGAWYGQGRKVKWFSPFLLAVWDPVREEFQSLCRCMSGFSDQFYAAAKERLGATIIPG 1204
Query: 712 PRPYYRFADTISPDVWFEPTE 732
P+PYY + S VWFEPTE
Sbjct: 1205 PKPYYNTGERCS--VWFEPTE 1223
Score = 89 (36.4 bits), Expect = 2.4e-58, Sum P(3) = 2.4e-58
Identities = 24/67 (35%), Positives = 34/67 (50%)
Query: 543 IKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEE-EPGFFQFATTLTSIDLDEIQK 601
+ V VC++ FD+L NG LL LR RR L + PG AT +++L +Q
Sbjct: 927 VTVQVCVFVFDLLEWNGTSLLHRPLRERRSLLPAALPGMSPGRVMLAT---AVELQPLQP 983
Query: 602 FLDAAVD 608
+AVD
Sbjct: 984 LQPSAVD 990
>UNIPROTKB|Q980T8 [details] [associations]
symbol:lig "DNA ligase" species:273057 "Sulfolobus
solfataricus P2" [GO:0003910 "DNA ligase (ATP) activity"
evidence=IBA] [GO:0005694 "chromosome" evidence=IBA] [GO:0006266
"DNA ligation" evidence=IBA] [GO:0006273 "lagging strand
elongation" evidence=IBA] [GO:0006289 "nucleotide-excision repair"
evidence=IBA] HAMAP:MF_00407 InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
InterPro:IPR022865 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679
PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005524
GO:GO:0005694 GO:GO:0051301 GO:GO:0046872 GO:GO:0003677
GO:GO:0007049 GO:GO:0006310 EMBL:AE006641 GenomeReviews:AE006641_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006289
GO:GO:0006273 eggNOG:COG1793 KO:K10747 OMA:AQVACLY GO:GO:0003910
GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 HOGENOM:HOG000036008 ProtClustDB:PRK01109
PIR:H90159 RefSeq:NP_341745.1 PDB:2HIV PDB:2HIX PDBsum:2HIV
PDBsum:2HIX ProteinModelPortal:Q980T8 SMR:Q980T8 PRIDE:Q980T8
GeneID:1455345 KEGG:sso:SSO0189 EvolutionaryTrace:Q980T8
Uniprot:Q980T8
Length = 601
Score = 594 (214.2 bits), Expect = 8.4e-58, P = 8.4e-58
Identities = 164/558 (29%), Positives = 279/558 (50%)
Query: 193 FIFLSLVFDMISNETGRILITDIVCNMLRTVMETTPEDLVPVVYLAANKIAPAHEGL-EL 251
F ++ FD + + R+ +T ++ ++L +T + VVY+ K+ P G EL
Sbjct: 3 FKVIAEYFDKLEKISSRLQLTALLADLLSKSDKTIIDK---VVYIIQGKLWPDFLGYPEL 59
Query: 252 GIGDASIIKALAEACGRTESHVKKQYQEMGDLGLVAKASRSSQSMMRKPDPL-TITK--- 307
GIG+ +IKA++ A E+ V+ Y+ +GDLG VA+ +S Q L T +K
Sbjct: 60 GIGEKFLIKAISIATNTDENSVENLYKTIGDLGEVARRLKSKQQSTGILGFLGTTSKESL 119
Query: 308 -VFDTFRLIAKEAGKDSQEKKKNRIKALLVAATDCEPQYLIRLLQSKLRIGLAEQTLLAA 366
V + + ++K A + + +I+ L +P L++K + E L
Sbjct: 120 TVDEVYSTLSKVALTTGEGSRDLKIRLLAGLLKKADP------LEAKFLVRFVEGRLRVG 173
Query: 367 LGQAAVYNEQHSKPPPNIQSPLEEAAKIVKQVFSVLPVYEKIVPALLTDGVWNLSNTCSF 426
+G A V + + A++I+++ +++ I ++ G+ L T
Sbjct: 174 IGDATVLDAMAIAFGGG-----QSASEIIERAYNLRADLGNIAKIIVEKGIEALK-TLKP 227
Query: 427 TPGIPIGPMLAKPTKGVSEIVNKFQDMEFTCEYKYDGERAQIHYLEDGSVEIYSRNAERN 486
GIPI PMLA+ EI+ K +YKYDGERAQIH ED + I+SR E
Sbjct: 228 QVGIPIRPMLAERLSNPEEILKKMGGNAIV-DYKYDGERAQIHKKED-KIFIFSRRLENI 285
Query: 487 TGKFPDVVLAVSRLKKPSVRSFVLDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIK-V 545
T ++PDVV VS+ + + F+++ EIVA D E ++ PFQ L R RK+ IK
Sbjct: 286 TSQYPDVVDYVSKYIEG--KEFIIEGEIVAIDPESGEMRPFQELMHRKRKSDIYEAIKEY 343
Query: 546 DVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDA 605
V ++ FD++Y + L RR+ L +S + + + A + + ++++++ F
Sbjct: 344 PVNVFLFDLMYYEDVDYTTKPLEARRK-LLESIVKPNDYVKIAHHIQANNVEDLKSFFYR 402
Query: 606 AVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTG 665
A+ EG+++K + +DA Y+ R W+KLK+DY + D++DLV + F+G+GKR G
Sbjct: 403 AISEGGEGVMVKAIGKDAIYQAGARGWLWIKLKRDYQSEMADTVDLVVVGGFYGKGKRGG 462
Query: 666 VYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPD 725
+ L+A Y+ + F+S+CK+ +GFS+ L+E L I + + R + PD
Sbjct: 463 KISSLLMAAYNPKTDSFESVCKVASGFSDEQLDELQKKLME--IKRDVKHPRVNSKMEPD 520
Query: 726 VWFEPTERPETSNSPASI 743
+W EP E S +I
Sbjct: 521 IWVEPVYVAEIIGSEITI 538
>UNIPROTKB|Q8TSR7 [details] [associations]
symbol:lig1 "DNA ligase 1" species:188937 "Methanosarcina
acetivorans C2A" [GO:0003910 "DNA ligase (ATP) activity"
evidence=IBA] [GO:0005694 "chromosome" evidence=IBA] [GO:0006266
"DNA ligation" evidence=IBA] [GO:0006273 "lagging strand
elongation" evidence=IBA] [GO:0006289 "nucleotide-excision repair"
evidence=IBA] HAMAP:MF_00407 InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
InterPro:IPR022865 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679
PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005524
GO:GO:0005694 GO:GO:0051301 GO:GO:0046872 GO:GO:0003677
GO:GO:0007049 GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0006289 GO:GO:0006273 eggNOG:COG1793
KO:K10747 GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10
SUPFAM:SSF117018 TIGRFAMs:TIGR00574 HSSP:P18858 EMBL:AE010299
RefSeq:NP_615688.1 ProteinModelPortal:Q8TSR7 GeneID:1472620
GenomeReviews:AE010299_GR KEGG:mac:MA0728 OMA:PAFENTT
ProtClustDB:CLSK281490 BioCyc:MACE188937:GI2O-796-MONOMER
Uniprot:Q8TSR7
Length = 580
Score = 564 (203.6 bits), Expect = 1.3e-54, P = 1.3e-54
Identities = 145/435 (33%), Positives = 227/435 (52%)
Query: 303 LTITKVFDTFRLIAKEAGKDSQEKKKNRIKALLVAATDCEPQYLIRLLQSKLRIGLAEQT 362
LTI +VF R I + +GK SQEKK + +L AT E +Y+IR++ +LR+G +Q
Sbjct: 106 LTIEEVFKRLRQIKEASGKGSQEKKTGLLSDILQKATPEEGKYIIRIVLGRLRLGFGDQF 165
Query: 363 LLAALGQAAVYNEQHSKPPPNIQSPLEEAAKIVKQVFSVLPVYEKIVPALLTDGVWNLSN 422
LL A A +++H A KI K+ +SV ++ L G
Sbjct: 166 LLEAFSIAFTGDKKH-------------AGKI-KESYSVCTDIGELAQTLAEHGA-GAPG 210
Query: 423 TCSFTPGIPIGPMLAKPTKGVSEIVNKFQDMEFTCEYKYDGERAQIHYLEDGSVEIYSRN 482
S PG P+ MLA+ + E+ + + + E KYDGER QIH D ++ +SR
Sbjct: 211 YFSIKPGRPVKSMLAQRVESFEELEERIKGKK-AAEEKYDGERVQIHKAGD-EIKAFSRR 268
Query: 483 AERNTGKFPDVVLAVSRLKKPSVRSFVLDCEIVAY---DREKQKI---LPFQTLSTRARK 536
E T ++PD++ AV + S + VLD EIVAY ++E +I PFQ L R RK
Sbjct: 269 LEDITAQYPDIIEAVR--ESISADTIVLDGEIVAYAELEKENTRIEEFYPFQNLMQRRRK 326
Query: 537 -NVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFFQFATTLTSID 595
V K V ++ FDILY NG+ LL++ RR L + G + +
Sbjct: 327 YEVEKYREKCPVAVFFFDILYLNGESLLKKTYPERRA-LLEEHVNGSGIVHLTRRTVTEN 385
Query: 596 LDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIA 655
++E++ F + V+ EG++ K+M ++ YE KRS WLK K++Y E + ++ DLV +
Sbjct: 386 IEELEDFFNETVEKGLEGIVAKSMSSNSVYEAGKRSWLWLKWKQEYSEGMRETFDLVVVG 445
Query: 656 AFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPY 715
+++G+GKR G +GA L A + ++F++ K+GTGF+EA EE +S L + + +
Sbjct: 446 SYYGKGKRKGSFGALLCAVLNEEEQQFETFTKVGTGFTEADAEEINSLLSAHTVSEAPKN 505
Query: 716 YRFADTISPDVWFEP 730
+ PD++ EP
Sbjct: 506 VIIKKGMLPDIFIEP 520
Score = 226 (84.6 bits), Expect = 2.9e-15, P = 2.9e-15
Identities = 62/178 (34%), Positives = 94/178 (52%)
Query: 236 YLAANKIAPAHEGLELGIGDASIIKALAEACGRTESHVKKQYQEMGDLGLVAKASRSSQS 295
YL I PA E LGI D + +A+A A G +E VKK+Y GDLG VA +
Sbjct: 44 YLFLGSIGPAFENTTLGIKDRLVTRAIAGAYGVSEEEVKKRYARAGDLGDVA-----FEL 98
Query: 296 MMRKPDPLTITKVFDTFRLIAKEAGKDSQEKKKNRIKALLVAATDCEPQYLIRLLQSKLR 355
++ LTI +VF R I + +GK SQEKK + +L AT E +Y+IR++ +LR
Sbjct: 99 SKKREASLTIEEVFKRLRQIKEASGKGSQEKKTGLLSDILQKATPEEGKYIIRIVLGRLR 158
Query: 356 IGLAEQTLLAALGQAAVYNEQHS---KPPPNIQSPLEEAAKIVKQVFSVLPVYEKIVP 410
+G +Q LL A A +++H+ K ++ + + E A+ + + + P Y I P
Sbjct: 159 LGFGDQFLLEAFSIAFTGDKKHAGKIKESYSVCTDIGELAQTLAEHGAGAPGYFSIKP 216
>UNIPROTKB|Q24FD9 [details] [associations]
symbol:TTHERM_00865240 "DNA ligase" species:312017
"Tetrahymena thermophila SB210" [GO:0003910 "DNA ligase (ATP)
activity" evidence=IBA] [GO:0005634 "nucleus" evidence=IBA]
[GO:0005694 "chromosome" evidence=IBA] [GO:0005739 "mitochondrion"
evidence=IBA] [GO:0006266 "DNA ligation" evidence=IBA] [GO:0006273
"lagging strand elongation" evidence=IBA] [GO:0006289
"nucleotide-excision repair" evidence=IBA] InterPro:IPR000977
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679
PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005739 GO:GO:0005524
GO:GO:0005634 GO:GO:0005694 GO:GO:0003677 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006289
GO:GO:0006273 GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10
SUPFAM:SSF117018 TIGRFAMs:TIGR00574 KO:K01971 EMBL:GG662285
RefSeq:XP_001026764.1 EnsemblProtists:EAS06519 GeneID:7839837
KEGG:tet:TTHERM_00865240 Uniprot:Q24FD9
Length = 635
Score = 564 (203.6 bits), Expect = 1.3e-54, P = 1.3e-54
Identities = 170/560 (30%), Positives = 280/560 (50%)
Query: 193 FIFLSLVFDMISNETGRILITDIVCNMLRTVMETTPEDL-VPVVYLAANKIAPAHEGLEL 251
F FL+ FD IS + R + + ++ ++ +L + +V L K+ + E+
Sbjct: 34 FYFLAKQFDDISKISSRNSGIEAIETLMNDYIQGGDNELFIQMVRLLTCKV----DSEEI 89
Query: 252 GIGDASIIKALAEACGRTESHVKKQYQEMGDLGLVAKASRSSQ-----SMMRKPDPLTIT 306
I ++S+++ L + + + K E GD+GL AK + + + + L+I
Sbjct: 90 QIANSSLVEILKVVYPQED--ITKFLFEKGDIGLYAKEMLEKKLEKEGNNRTEKNHLSIL 147
Query: 307 KVFDTFRLIAKEAGKDSQEKKKNRIKALLVAATD-CEPQYLIRLLQSKLRIGLAEQTLLA 365
+V F + G S+ +K+ I L D E QY IR+L LRIG++E++++
Sbjct: 148 EVTSFFEKLKNLQGDRSRLEKQELIIDFLKKIQDPLEIQYFIRILSKSLRIGVSEKSIIK 207
Query: 366 ALGQAAVYNEQHSKPPPNIQSPLEEAAKIVKQVFSVLPVYEKIVPALLTDGVWNLSNTCS 425
AL + K ++ S L+ + ++F Y AL TD
Sbjct: 208 ALTNI------NKKKKNSLDSLLKN---VQDKIFG----YNT---ALHTD---------- 241
Query: 426 FTPGIPIGPMLAKPTKGVSEIVN---KFQDMEFTCEYKYDGERAQIHYLEDGSVEIYSRN 482
G P+ PMLAKP E++ K++ + + E KYDGER Q+HY + ++++SRN
Sbjct: 242 IQIGTPVPPMLAKPVSDFDELLKFLKKYESKKVSLELKYDGERCQVHYGKKKGIKLFSRN 301
Query: 483 AERNTGKFPDVVLAVSRL--KKPSVRSFVLDCEIVAYDREKQKILPFQTLS-TRARKNVS 539
E K+P +V + + K SV +LD EIV D K I FQ R RK S
Sbjct: 302 LEIQNEKYPQLVQQLEKYFQKNNSVEDCILDGEIVVTD-SKGNIKSFQEQQQNRKRKQDS 360
Query: 540 LSDIKVDVC----IYAFDILYRNG-QPLLQEQLRVRREHLYDSFEEEPGFFQFATTLTSI 594
+ D IY FDIL+ N + +EQL R+ + ++F E + + +
Sbjct: 361 NKVVAFDEDNIEKIYLFDILFLNACEQNTKEQL-YRKSLIKENFPIEGPVNHAESKIFDL 419
Query: 595 ----DLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIES-IGDSL 649
D DE++K + +D EG ++K++D + Y+ + R+ W KLKK + + D+
Sbjct: 420 SIQKDFDELKKLVKQYIDQKEEGAMVKSLDSNTFYDNNGRT-QWAKLKKQVLSGGLADTF 478
Query: 650 DLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVI 709
D++PIAA++G+GKR+GVYG++LLACYD +E+ ++CKIGTGFS+ L++ + L+ KV
Sbjct: 479 DVIPIAAYYGKGKRSGVYGSYLLACYDDKKKEYVALCKIGTGFSDQFLQDSTDRLKQKVC 538
Query: 710 PKPRPYYRFADTISPDVWFE 729
+ Y T PDVWF+
Sbjct: 539 SQKPKEYSVHRTFKPDVWFQ 558
>UNIPROTKB|Q8TMT1 [details] [associations]
symbol:lig2 "DNA ligase 2" species:188937 "Methanosarcina
acetivorans C2A" [GO:0003910 "DNA ligase (ATP) activity"
evidence=IBA] [GO:0005694 "chromosome" evidence=IBA] [GO:0006266
"DNA ligation" evidence=IBA] [GO:0006273 "lagging strand
elongation" evidence=IBA] [GO:0006289 "nucleotide-excision repair"
evidence=IBA] HAMAP:MF_00407 InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
InterPro:IPR022865 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679
PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005524
GO:GO:0005694 GO:GO:0051301 GO:GO:0046872 GO:GO:0003677
GO:GO:0007049 GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0006289 GO:GO:0006273 eggNOG:COG1793
KO:K10747 GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10
SUPFAM:SSF117018 TIGRFAMs:TIGR00574 EMBL:AE010299
GenomeReviews:AE010299_GR RefSeq:NP_617472.1
ProteinModelPortal:Q8TMT1 GeneID:1474460 KEGG:mac:MA2571
OMA:ARVQVHK ProtClustDB:CLSK568925
BioCyc:MACE188937:GI2O-2632-MONOMER Uniprot:Q8TMT1
Length = 568
Score = 322 (118.4 bits), Expect = 2.7e-40, Sum P(2) = 2.7e-40
Identities = 90/280 (32%), Positives = 145/280 (51%)
Query: 431 PIGPMLAKPTKGVSEIVNKFQDMEFTC-EYKYDGERAQIHYLEDGSVEIYSRNAERNTGK 489
PI ML++ + + + +DM+ E+K+DG R QIH SV ++SR E T
Sbjct: 229 PIKMMLSQISPDIDADI---RDMKGAAIEWKFDGARVQIHK-NGNSVTLFSRKLENVTNS 284
Query: 490 FPDVVLAVSRLKKPSVRSFVLDCEIVAYDREKQKILPFQTLSTRARKNVSLSD--IKVDV 547
PD+V + + K S +LD E VA D E K FQ + R R+ + + + + +
Sbjct: 285 LPDLVEIIRKHVK--AESAILDGEAVAVD-ENGKPRAFQEILKRFRRKYDVEEKALGIPI 341
Query: 548 CIYAFDILYRNGQPLLQEQLRVRREHLYDSFE---EEPGFFQFATTLTSIDLDEIQKFLD 604
+ FDI+Y NG+ L+ L RR+ L E E+ + + DL+ ++K
Sbjct: 342 QLNLFDIMYLNGRTLIDLPLVERRKALESCVESSVEDSKSISVDEQVITGDLELVEKIYR 401
Query: 605 AAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRT 664
A++A EG+++K + ++ Y P KR NWLK KK +E+ LDLV + A G G+R
Sbjct: 402 EALNAGHEGVMVK--NPNSAYSPGKRGKNWLK-KKPLMET----LDLVVVGAEWGYGRRA 454
Query: 665 GVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSL 704
+ G++ +ACYD F + K+GTG ++ L+E + L
Sbjct: 455 NLIGSYSVACYDPETSRFLQVGKVGTGLTDEQLKELTEML 494
Score = 181 (68.8 bits), Expect = 2.7e-40, Sum P(2) = 2.7e-40
Identities = 50/176 (28%), Positives = 93/176 (52%)
Query: 203 ISNETGRILITDIVCNMLRTVMETTPEDLVPVVYLAANKIAPAHEGLELGIGDASIIKAL 262
I + I T+ V ++L+ V E+L + +++ PA G +LGIG + + +L
Sbjct: 14 IEKISSTIETTNKVADLLKKV---DVEELPLATHFIMSEVFPAWSGEQLGIGTSLLYSSL 70
Query: 263 AEACGRTESHVKKQYQEMGDLG----LVAKASRSSQ----SMMRKPDPLTITKVFDTFRL 314
++A G + ++ + GD+G L+ K R +Q S + + L+IT+V+ F+
Sbjct: 71 SKASGMSVRSIESLIRTTGDIGETALLILKEKRKNQVTFSSFLEEQPELSITEVYQRFKT 130
Query: 315 IAKEAGKDSQEKKKNRIKALLVAATDCEPQYLIRLLQSKLRIGLAEQTLLAALGQA 370
++ +GK SQE K ++ L ++T E +Y+ RL +LRIG+ E + A+ +A
Sbjct: 131 ASEASGKGSQELKIKNLQFLFNSSTPREAKYISRLALEELRIGVGEGVVRDAIARA 186
Score = 66 (28.3 bits), Expect = 3.1e-28, Sum P(2) = 3.1e-28
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 245 AHEGLELGIGDASIIKALAEACGRTESHVKKQYQEMGDLGLVAKASR 291
A E L +G+G+ + A+A A V+ + DLG+VA A++
Sbjct: 166 ALEELRIGVGEGVVRDAIARAFSVPSDKVEHAFMVTNDLGIVAAAAK 212
>UNIPROTKB|Q0JKB6 [details] [associations]
symbol:Os01g0685500 "Os01g0685500 protein" species:39947
"Oryza sativa Japonica Group" [GO:0003910 "DNA ligase (ATP)
activity" evidence=IBA] [GO:0005634 "nucleus" evidence=IBA]
[GO:0005694 "chromosome" evidence=IBA] [GO:0006266 "DNA ligation"
evidence=IBA] [GO:0006273 "lagging strand elongation" evidence=IBA]
[GO:0006289 "nucleotide-excision repair" evidence=IBA]
InterPro:IPR012309 InterPro:IPR012310 Pfam:PF01068 Pfam:PF04679
PROSITE:PS50160 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694
GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
EMBL:AP008207 GO:GO:0006289 GO:GO:0006273 KO:K10747 GO:GO:0003910
RefSeq:NP_001043898.1 UniGene:Os.55232 ProteinModelPortal:Q0JKB6
GeneID:4324149 KEGG:osa:4324149 Gramene:Q0JKB6
ProtClustDB:CLSN2691710 Uniprot:Q0JKB6
Length = 318
Score = 370 (135.3 bits), Expect = 3.2e-33, P = 3.2e-33
Identities = 75/178 (42%), Positives = 114/178 (64%)
Query: 562 LLQEQLRVRREHLYDSFEEEPGFFQFATTLT------SID----LDEIQKFLDAAVDASC 611
LL LR RR++++D F+E+PG F+ A LT S+D L+ + F A +SC
Sbjct: 65 LLNCSLRQRRKYIHDLFQEKPGHFELAQQLTVEADEASVDNSTTLERMNTFFKMACQSSC 124
Query: 612 EGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFL 671
EG+++K +D DA Y SKR +WLK+K+DY+ +GDSLDLVPI A++G G++ G Y FL
Sbjct: 125 EGIMLKILDVDAGYSASKRCDSWLKVKRDYV-GLGDSLDLVPIGAWYGNGRKAGWYSPFL 183
Query: 672 LACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRS-KVIPKPRPYYRFADTISPDVWF 728
+ACY+ EEFQS+C++ +GFS+ +E +++PK YY+ D + P++WF
Sbjct: 184 MACYNPEYEEFQSVCRVMSGFSDEFYKEMKEFYSGDRILPKKPVYYK-TDEL-PELWF 239
>UNIPROTKB|E2RNT6 [details] [associations]
symbol:LIG3 "DNA ligase" species:9615 "Canis lupus
familiaris" [GO:0003910 "DNA ligase (ATP) activity" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0051103 "DNA ligation involved in DNA repair" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000977 InterPro:IPR001510
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF00645 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 PROSITE:PS00333 PROSITE:PS00347 PROSITE:PS00697
PROSITE:PS50064 PROSITE:PS50160 InterPro:IPR001357 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0008270 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0003910 GO:GO:0051103
Gene3D:1.10.3260.10 SUPFAM:SSF117018 TIGRFAMs:TIGR00574
Gene3D:3.30.1740.10 GeneTree:ENSGT00700000104500 EMBL:AAEX03006627
Ensembl:ENSCAFT00000029122 Uniprot:E2RNT6
Length = 938
Score = 359 (131.4 bits), Expect = 1.4e-30, Sum P(2) = 1.4e-30
Identities = 90/287 (31%), Positives = 141/287 (49%)
Query: 431 PIGPMLAKPTKGVSEIVNKFQDMEFTCEYKYDGERAQIHYLEDGSVEIYSRNAE----RN 486
P+ PMLA+ K + + K + F+ E KYDGER Q+H D +SR+ +
Sbjct: 393 PVQPMLAEACKSIEHAMKKCPNGMFS-EIKYDGERVQVHKNGD-HFSYFSRSLKPVLPHK 450
Query: 487 TGKFPDVVLAVSRLKKPSVRSFVLDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIKVD 546
F D + P S +LD E++ D + K LPF TL K + D +
Sbjct: 451 VAHFKDYIPQAF----PGGHSMILDSEVLLIDTKTGKPLPFGTLGVH--KKAAFQD--AN 502
Query: 547 VCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAA 606
VC++ FD +Y N L+ L RR+ L+D+ E P F+ ++ ++
Sbjct: 503 VCLFVFDCIYFNDVSLMDRPLSERRKFLHDNMVEIPNRIMFSEMKQVTKASDLVDMINRV 562
Query: 607 VDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIE--SIGDSLDLVPIAAFHGRGKRT 664
+ EGL++K D TYEP KR +WLK+KKDY+ ++ D DLV + AF+G+G +
Sbjct: 563 IREGLEGLVLK--DVKGTYEPGKR--HWLKVKKDYLNEGAMADMADLVVLGAFYGQGSKG 618
Query: 665 GVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPK 711
G+ FL+ CYD +++++ ++ K G +A L L I K
Sbjct: 619 GMMSIFLMGCYDPSSQKWCTVTKCSGGHDDATLARLQKELDMVKISK 665
Score = 60 (26.2 bits), Expect = 1.4e-30, Sum P(2) = 1.4e-30
Identities = 41/168 (24%), Positives = 69/168 (41%)
Query: 235 VYLAANKIAPAHEGLELGIGDASIIKALAEACGRTESHVKKQYQEMGDLGLVAKASRSSQ 294
VYL + P + D I+K + + + E GD+ + Q
Sbjct: 216 VYLTVKLLLPGVIKSVYNLNDKQIVKLFSRIFNCNPDDMARDL-EQGDVSETIRVF-FEQ 273
Query: 295 SMMRKPDP---LTITKVFDTFRL-IAKEAGKDSQEKKKNRIKALLVAATDCEPQYLIRLL 350
S P LTI +V D F L ++K +D Q++ I A A D + +IRL+
Sbjct: 274 SRSFPPAAKSLLTIQEV-DKFLLQLSKLTKEDEQQQALQDI-ASRCTANDLK--CIIRLI 329
Query: 351 QSKLRIGLAEQTLLAALGQAAVYNEQHSKPPPNIQSPLEEAAKIVKQV 398
+ L++ + +L AL A Y + K N+Q +E + ++V
Sbjct: 330 KHDLKMNSGAKHVLDALDPNA-Y--EAFKASRNLQDVVERVLRNEQEV 374
>UNIPROTKB|J9P597 [details] [associations]
symbol:LIG3 "DNA ligase" species:9615 "Canis lupus
familiaris" [GO:0003910 "DNA ligase (ATP) activity" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0051103 "DNA ligation involved in DNA repair" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000977 InterPro:IPR001510
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF00645 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 PROSITE:PS00333 PROSITE:PS00347 PROSITE:PS00697
PROSITE:PS50064 PROSITE:PS50160 InterPro:IPR001357 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0008270 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0003910 GO:GO:0051103
Gene3D:1.10.3260.10 SUPFAM:SSF117018 TIGRFAMs:TIGR00574 OMA:WSETDLL
Gene3D:3.30.1740.10 GeneTree:ENSGT00700000104500 EMBL:AAEX03006627
Ensembl:ENSCAFT00000048097 Uniprot:J9P597
Length = 957
Score = 359 (131.4 bits), Expect = 1.5e-30, Sum P(2) = 1.5e-30
Identities = 90/287 (31%), Positives = 141/287 (49%)
Query: 431 PIGPMLAKPTKGVSEIVNKFQDMEFTCEYKYDGERAQIHYLEDGSVEIYSRNAE----RN 486
P+ PMLA+ K + + K + F+ E KYDGER Q+H D +SR+ +
Sbjct: 447 PVQPMLAEACKSIEHAMKKCPNGMFS-EIKYDGERVQVHKNGD-HFSYFSRSLKPVLPHK 504
Query: 487 TGKFPDVVLAVSRLKKPSVRSFVLDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIKVD 546
F D + P S +LD E++ D + K LPF TL K + D +
Sbjct: 505 VAHFKDYIPQAF----PGGHSMILDSEVLLIDTKTGKPLPFGTLGVH--KKAAFQD--AN 556
Query: 547 VCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAA 606
VC++ FD +Y N L+ L RR+ L+D+ E P F+ ++ ++
Sbjct: 557 VCLFVFDCIYFNDVSLMDRPLSERRKFLHDNMVEIPNRIMFSEMKQVTKASDLVDMINRV 616
Query: 607 VDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIE--SIGDSLDLVPIAAFHGRGKRT 664
+ EGL++K D TYEP KR +WLK+KKDY+ ++ D DLV + AF+G+G +
Sbjct: 617 IREGLEGLVLK--DVKGTYEPGKR--HWLKVKKDYLNEGAMADMADLVVLGAFYGQGSKG 672
Query: 665 GVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPK 711
G+ FL+ CYD +++++ ++ K G +A L L I K
Sbjct: 673 GMMSIFLMGCYDPSSQKWCTVTKCSGGHDDATLARLQKELDMVKISK 719
Score = 60 (26.2 bits), Expect = 1.5e-30, Sum P(2) = 1.5e-30
Identities = 41/168 (24%), Positives = 69/168 (41%)
Query: 235 VYLAANKIAPAHEGLELGIGDASIIKALAEACGRTESHVKKQYQEMGDLGLVAKASRSSQ 294
VYL + P + D I+K + + + E GD+ + Q
Sbjct: 270 VYLTVKLLLPGVIKSVYNLNDKQIVKLFSRIFNCNPDDMARDL-EQGDVSETIRVF-FEQ 327
Query: 295 SMMRKPDP---LTITKVFDTFRL-IAKEAGKDSQEKKKNRIKALLVAATDCEPQYLIRLL 350
S P LTI +V D F L ++K +D Q++ I A A D + +IRL+
Sbjct: 328 SRSFPPAAKSLLTIQEV-DKFLLQLSKLTKEDEQQQALQDI-ASRCTANDLK--CIIRLI 383
Query: 351 QSKLRIGLAEQTLLAALGQAAVYNEQHSKPPPNIQSPLEEAAKIVKQV 398
+ L++ + +L AL A Y + K N+Q +E + ++V
Sbjct: 384 KHDLKMNSGAKHVLDALDPNA-Y--EAFKASRNLQDVVERVLRNEQEV 428
>UNIPROTKB|F1MQY1 [details] [associations]
symbol:LIG3 "DNA ligase" species:9913 "Bos taurus"
[GO:0045910 "negative regulation of DNA recombination"
evidence=IEA] [GO:0043504 "mitochondrial DNA repair" evidence=IEA]
[GO:0006303 "double-strand break repair via nonhomologous end
joining" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0000795 "synaptonemal complex" evidence=IEA] [GO:0003910 "DNA
ligase (ATP) activity" evidence=IEA] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0051103
"DNA ligation involved in DNA repair" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000977 InterPro:IPR001510
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF00645 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 PROSITE:PS00333 PROSITE:PS00347 PROSITE:PS00697
PROSITE:PS50064 PROSITE:PS50160 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0006260 GO:GO:0008270 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0003910
GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 OMA:WSETDLL Gene3D:3.30.1740.10
GeneTree:ENSGT00700000104500 EMBL:DAAA02048465 IPI:IPI00905942
UniGene:Bt.25483 Ensembl:ENSBTAT00000024875 Uniprot:F1MQY1
Length = 943
Score = 359 (131.4 bits), Expect = 2.2e-30, Sum P(3) = 2.2e-30
Identities = 90/287 (31%), Positives = 142/287 (49%)
Query: 431 PIGPMLAKPTKGVSEIVNKFQDMEFTCEYKYDGERAQIHYLEDGSVEIYSRNAE----RN 486
P+ PMLA+ K + + K + F+ E KYDGER Q+H D +SR+ +
Sbjct: 482 PVQPMLAEACKSIEYAMKKCPNGMFS-EIKYDGERVQVHKKGD-HFSYFSRSLKPVLPHK 539
Query: 487 TGKFPDVVLAVSRLKKPSVRSFVLDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIKVD 546
F D + P S +LD E++ D K LPF TL K + D +
Sbjct: 540 VAHFKDFIPRAF----PGGHSMILDSEVLLIDNRTGKPLPFGTLGVH--KKAAFQD--AN 591
Query: 547 VCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAA 606
VC++ FD +Y N L+ L RR+ L+D+ E P F+ ++ ++
Sbjct: 592 VCLFVFDCIYFNDVSLMDRPLCERRKLLHDNMVEIPNRIMFSEMKQVTKASDLVDMINRV 651
Query: 607 VDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIE--SIGDSLDLVPIAAFHGRGKRT 664
+ EGL++K D TYEP KR +WLK+KKDY+ ++ D+ DLV + AF+G+G +
Sbjct: 652 IQEGLEGLVLK--DVKGTYEPGKR--HWLKVKKDYLNEGAMADTADLVVLGAFYGQGSKG 707
Query: 665 GVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPK 711
G+ FL+ CYD +++++ ++ K G +A L + L I K
Sbjct: 708 GMMSIFLMGCYDPSSQKWCTVTKCAGGHDDATLARLQTELDMVKISK 754
Score = 62 (26.9 bits), Expect = 2.2e-30, Sum P(3) = 2.2e-30
Identities = 39/167 (23%), Positives = 68/167 (40%)
Query: 235 VYLAANKIAPAHEGLELGIGDASIIKALAEACGRTESHVKKQYQEMGDLGLVAKA--SRS 292
VYL + P + D I+K + + + E GD+ + +S
Sbjct: 305 VYLTVKLLLPGVIKSVYNLNDKQIVKLFSRIFNCNSDDMTRDL-EQGDVSETIRVFFEQS 363
Query: 293 SQSMMRKPDPLTITKVFDTFRL-IAKEAGKDSQEKKKNRIKALLVAATDCEPQYLIRLLQ 351
LTI +V D F L ++K +D Q++ I A A D + +IRL++
Sbjct: 364 KSFPPAAKSLLTIQEV-DEFLLRLSKLTKEDEQQQALQDI-ASRCTANDLK--CIIRLIK 419
Query: 352 SKLRIGLAEQTLLAALGQAAVYNEQHSKPPPNIQSPLEEAAKIVKQV 398
L++ + +L AL A Y + K N+Q +E + ++V
Sbjct: 420 HDLKMNSGAKHVLDALDPNA-Y--EAFKASRNLQDVVERVLRNEQEV 463
Score = 39 (18.8 bits), Expect = 2.2e-30, Sum P(3) = 2.2e-30
Identities = 7/12 (58%), Positives = 8/12 (66%)
Query: 134 EKESQPTPPSPK 145
E S PTP +PK
Sbjct: 237 EAHSSPTPKTPK 248
>UNIPROTKB|P49916 [details] [associations]
symbol:LIG3 "DNA ligase 3" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0051103 "DNA ligation involved in DNA
repair" evidence=IEA] [GO:0051301 "cell division" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000795 "synaptonemal
complex" evidence=IEA] [GO:0006303 "double-strand break repair via
nonhomologous end joining" evidence=IEA] [GO:0043504 "mitochondrial
DNA repair" evidence=IEA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IEA] [GO:0003909 "DNA ligase activity"
evidence=IDA] [GO:0003910 "DNA ligase (ATP) activity" evidence=IBA]
[GO:0005694 "chromosome" evidence=IBA] [GO:0005739 "mitochondrion"
evidence=IBA] [GO:0006273 "lagging strand elongation" evidence=IBA]
[GO:0006289 "nucleotide-excision repair" evidence=IBA] [GO:0005515
"protein binding" evidence=IPI] [GO:0033151 "V(D)J recombination"
evidence=IDA] [GO:0007131 "reciprocal meiotic recombination"
evidence=TAS] [GO:0007283 "spermatogenesis" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006281 "DNA repair"
evidence=TAS] [GO:0006284 "base-excision repair" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] Reactome:REACT_216
InterPro:IPR000977 InterPro:IPR001510 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF00645 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 PROSITE:PS00333
PROSITE:PS00347 PROSITE:PS00697 PROSITE:PS50064 PROSITE:PS50160
InterPro:IPR001357 GO:GO:0005524 GO:GO:0005694 GO:GO:0005654
GO:GO:0051301 GO:GO:0046872 GO:GO:0006284 GO:GO:0003677
GO:GO:0008270 GO:GO:0007283 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
EMBL:CH471147 GO:GO:0007131 GO:GO:0006289 DrugBank:DB00290
GO:GO:0006273 eggNOG:COG1793 GO:GO:0003910 GO:GO:0051103
Gene3D:1.10.3260.10 SUPFAM:SSF117018 TIGRFAMs:TIGR00574 KO:K10776
EMBL:X84740 EMBL:U40671 EMBL:AF491645 EMBL:AC004223 EMBL:AC022903
EMBL:BC068005 IPI:IPI00000156 IPI:IPI00029081 PIR:I37292
RefSeq:NP_002302.2 RefSeq:NP_039269.2 UniGene:Hs.100299 PDB:1IMO
PDB:1IN1 PDB:1UW0 PDB:3L2P PDB:3PC7 PDB:3PC8 PDB:3QVG PDBsum:1IMO
PDBsum:1IN1 PDBsum:1UW0 PDBsum:3L2P PDBsum:3PC7 PDBsum:3PC8
PDBsum:3QVG ProteinModelPortal:P49916 SMR:P49916 IntAct:P49916
MINT:MINT-4531178 STRING:P49916 PhosphoSite:P49916 DMDM:251757259
PaxDb:P49916 PRIDE:P49916 DNASU:3980 Ensembl:ENST00000262327
Ensembl:ENST00000378526 GeneID:3980 KEGG:hsa:3980 UCSC:uc002hik.2
CTD:3980 GeneCards:GC17P033307 HGNC:HGNC:6600 HPA:HPA006723
MIM:600940 neXtProt:NX_P49916 PharmGKB:PA30374 HOGENOM:HOG000007653
HOVERGEN:HBG005515 InParanoid:P49916 OMA:WSETDLL OrthoDB:EOG44BB1K
BRENDA:6.5.1.1 ChiTaRS:LIG3 EvolutionaryTrace:P49916
GenomeRNAi:3980 NextBio:15598 ArrayExpress:P49916 Bgee:P49916
CleanEx:HS_LIG3 Genevestigator:P49916 GermOnline:ENSG00000005156
Gene3D:3.30.1740.10 Uniprot:P49916
Length = 1009
Score = 356 (130.4 bits), Expect = 3.2e-30, Sum P(2) = 3.2e-30
Identities = 91/287 (31%), Positives = 141/287 (49%)
Query: 431 PIGPMLAKPTKGVSEIVNKFQDMEFTCEYKYDGERAQIHYLEDGSVEIYSRNAE----RN 486
P+ PMLA+ K V + K + F+ E KYDGER Q+H D +SR+ +
Sbjct: 480 PVQPMLAEACKSVEYAMKKCPNGMFS-EIKYDGERVQVHKNGD-HFSYFSRSLKPVLPHK 537
Query: 487 TGKFPDVVLAVSRLKKPSVRSFVLDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIKVD 546
F D + P S +LD E++ D + K LPF TL K + D +
Sbjct: 538 VAHFKDYIPQAF----PGGHSMILDSEVLLIDNKTGKPLPFGTLGVH--KKAAFQD--AN 589
Query: 547 VCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAA 606
VC++ FD +Y N L+ L RR+ L+D+ E P F+ ++ +
Sbjct: 590 VCLFVFDCIYFNDVSLMDRPLCERRKFLHDNMVEIPNRIMFSEMKRVTKALDLADMITRV 649
Query: 607 VDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIE--SIGDSLDLVPIAAFHGRGKRT 664
+ EGL++K D TYEP KR +WLK+KKDY+ ++ D+ DLV + AF+G+G +
Sbjct: 650 IQEGLEGLVLK--DVKGTYEPGKR--HWLKVKKDYLNEGAMADTADLVVLGAFYGQGSKG 705
Query: 665 GVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPK 711
G+ FL+ CYD ++++ ++ K G +A L + L I K
Sbjct: 706 GMMSIFLMGCYDPGSQKWCTVTKCAGGHDDATLARLQNELDMVKISK 752
Score = 61 (26.5 bits), Expect = 3.2e-30, Sum P(2) = 3.2e-30
Identities = 39/167 (23%), Positives = 67/167 (40%)
Query: 235 VYLAANKIAPAHEGLELGIGDASIIKALAEACGRTESHVKKQYQEMGDLGLVAKA--SRS 292
VYL + P + D I+K + + + E GD+ + +S
Sbjct: 303 VYLTVKLLLPGVIKTVYNLNDKQIVKLFSRIFNCNPDDMARDL-EQGDVSETIRVFFEQS 361
Query: 293 SQSMMRKPDPLTITKVFDTFRL-IAKEAGKDSQEKKKNRIKALLVAATDCEPQYLIRLLQ 351
LTI +V D F L ++K +D Q++ I A A D + +IRL++
Sbjct: 362 KSFPPAAKSLLTIQEV-DEFLLRLSKLTKEDEQQQALQDI-ASRCTANDLK--CIIRLIK 417
Query: 352 SKLRIGLAEQTLLAALGQAAVYNEQHSKPPPNIQSPLEEAAKIVKQV 398
L++ + +L AL A Y + K N+Q +E ++V
Sbjct: 418 HDLKMNSGAKHVLDALDPNA-Y--EAFKASRNLQDVVERVLHNAQEV 461
>DICTYBASE|DDB_G0283857 [details] [associations]
symbol:lig3 "DNA ligase III" species:44689
"Dictyostelium discoideum" [GO:0051103 "DNA ligation involved in
DNA repair" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003910 "DNA ligase (ATP) activity"
evidence=IEA;IBA] [GO:0003909 "DNA ligase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IBA] [GO:0006289 "nucleotide-excision repair"
evidence=IBA] [GO:0006273 "lagging strand elongation" evidence=IBA]
[GO:0006266 "DNA ligation" evidence=IBA] [GO:0005694 "chromosome"
evidence=IBA] [GO:0005634 "nucleus" evidence=IEA;IBA] [GO:0051301
"cell division" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0016874 "ligase activity" evidence=IEA]
[GO:0007049 "cell cycle" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 InterPro:IPR001357
dictyBase:DDB_G0283857 Pfam:PF00533 GO:GO:0005524 GO:GO:0005634
GO:GO:0005694 GO:GO:0051301 GenomeReviews:CM000153_GR GO:GO:0046872
GO:GO:0003677 GO:GO:0007049 GO:GO:0006310 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AAFI02000057 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0006289 GO:GO:0006273
eggNOG:COG1793 GO:GO:0003910 GO:GO:0051103 TIGRFAMs:TIGR00574
RefSeq:XP_638847.1 ProteinModelPortal:Q54QM4
EnsemblProtists:DDB0232266 GeneID:8624245 KEGG:ddi:DDB_G0283857
KO:K10776 OMA:INTGAKF ProtClustDB:CLSZ2736577 Uniprot:Q54QM4
Length = 1175
Score = 358 (131.1 bits), Expect = 4.3e-29, P = 4.3e-29
Identities = 97/286 (33%), Positives = 148/286 (51%)
Query: 431 PIGPMLAKPTKGVSEIVNKFQDMEFTCEYKYDGERAQIHYLEDGS-VEIYSRNAER-NTG 488
PI PML K K V +V + F E KYDGER QIH +DG+ YSRN +
Sbjct: 256 PIKPMLPKAVKTVEGVVKSSEC--FYAEIKYDGERIQIH--KDGNQFSCYSRNLKPLMPW 311
Query: 489 KFPDVVLAVSRLKKPSVRSFVLDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIKVDVC 548
K +V + + K + +LD EI+ D + + LPF TLS +KN D VC
Sbjct: 312 KVDEVKPYIPKSTK--AQQMILDGEILLMDTKTSQPLPFGTLSAH-KKN-GFKD--ATVC 365
Query: 549 IYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFFQFA-TTLTS--IDLDEIQKFLDA 605
++ FDILY NG+ L+ L+ RRE L + +F+ T+ + + ++ L+
Sbjct: 366 VFLFDILYLNGKSLIHLPLKERREILEKNVMVVKNRIEFSEVTIVNGASEKSKLTALLNR 425
Query: 606 AVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTG 665
EGL+IK D + YEP R +W+K+KKDYI + DS DL+ + ++G G G
Sbjct: 426 VFKEKLEGLVIK--DAMSEYEPGCR--HWIKIKKDYIHGMADSADLIAVGGYYGSGSMGG 481
Query: 666 VYGAFLLACYDSNNEEFQSICKIGTGFSEAM---LEERSSSLRSKV 708
+ FL+ CYD N+ ++++ K G + M L+ + +S +K+
Sbjct: 482 LVTVFLMVCYDKQNKIYKTVVKASGGLDDNMIAKLQPKVTSTMTKI 527
>ZFIN|ZDB-GENE-030131-8453 [details] [associations]
symbol:lig3 "ligase III, DNA, ATP-dependent"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003909 "DNA ligase activity" evidence=IEA] [GO:0003910 "DNA
ligase (ATP) activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0051103 "DNA ligation involved in DNA repair" evidence=IEA]
[GO:0016874 "ligase activity" evidence=IEA] [GO:0006974 "response
to DNA damage stimulus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000977 InterPro:IPR001510
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF00645 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 PROSITE:PS00333 PROSITE:PS00347 PROSITE:PS00697
PROSITE:PS50064 PROSITE:PS50160 ZFIN:ZDB-GENE-030131-8453
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0008270
GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
eggNOG:COG1793 GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10
TIGRFAMs:TIGR00574 CTD:3980 HOGENOM:HOG000007653 HOVERGEN:HBG005515
OrthoDB:EOG44BB1K Gene3D:3.30.1740.10 EMBL:BC098869 IPI:IPI00618829
RefSeq:NP_001025345.2 UniGene:Dr.107348 ProteinModelPortal:Q4KM23
SMR:Q4KM23 STRING:Q4KM23 GeneID:563276 InParanoid:Q4KM23
NextBio:20884821 Uniprot:Q4KM23
Length = 752
Score = 352 (129.0 bits), Expect = 7.1e-28, Sum P(3) = 7.1e-28
Identities = 87/281 (30%), Positives = 143/281 (50%)
Query: 431 PIGPMLAKPTKGVSEIVNKFQDMEFTCEYKYDGERAQIHYLEDGS-VEIYSRNAE----R 485
P+ PMLA+ K + + K + ++ E KYDGER Q+H ++G+ +SR+ +
Sbjct: 393 PVQPMLAEACKSIEYAMKKCPNGMYS-EIKYDGERVQVH--KNGNHFSYFSRSLKPVLPH 449
Query: 486 NTGKFPDVVLAVSRLKKPSVRSFVLDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIKV 545
F D + S +LD E++ D + K LPF TL K + D +V
Sbjct: 450 KVAHFKDFIPQAFA----GGHSMILDAEVLLIDTKTSKPLPFGTLGVH--KKAAFQDAQV 503
Query: 546 DVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDA 605
++ FD +Y NG L+ + L RR+ L+D+ E P F+ ++ + +
Sbjct: 504 G--LFVFDCIYFNGVSLMDKPLCERRKFLHDNMVEVPNRILFSEMKHVTRAPDLAEMITR 561
Query: 606 AVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIE--SIGDSLDLVPIAAFHGRGKR 663
+ EGL++K D YEP KR +WLK+KKDY+ ++ D+ DLV + AF+G+G
Sbjct: 562 VIREGLEGLVLK--DIKGLYEPGKR--HWLKVKKDYLNEGAMADTADLVVLGAFYGKGSN 617
Query: 664 TGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSL 704
G+ +FL+ CYD + ++ ++ K GF +AML+ L
Sbjct: 618 GGIMSSFLMGCYDPESRKWCTVTKCSGGFDDAMLDRLQKDL 658
Score = 41 (19.5 bits), Expect = 7.1e-28, Sum P(3) = 7.1e-28
Identities = 9/31 (29%), Positives = 18/31 (58%)
Query: 384 IQSPLEEAAKIVKQVFSVLPVYEKIVPALLT 414
+ +P E+A +K+ + V ++EK+ A T
Sbjct: 36 VPNPFSESAGEMKEWYHVKCIFEKLERARAT 66
Score = 37 (18.1 bits), Expect = 7.1e-28, Sum P(3) = 7.1e-28
Identities = 7/10 (70%), Positives = 8/10 (80%)
Query: 433 GPMLAKPTKG 442
GP AKPT+G
Sbjct: 150 GPSPAKPTQG 159
>UNIPROTKB|F1P275 [details] [associations]
symbol:LIG4 "DNA ligase" species:9031 "Gallus gallus"
[GO:0006260 "DNA replication" evidence=IEA] [GO:0003910 "DNA ligase
(ATP) activity" evidence=IEA] [GO:0050769 "positive regulation of
neurogenesis" evidence=IEA] [GO:0051102 "DNA ligation involved in
DNA recombination" evidence=IEA] [GO:0051103 "DNA ligation involved
in DNA repair" evidence=IEA] [GO:0051276 "chromosome organization"
evidence=IEA] [GO:0051402 "neuron apoptotic process" evidence=IEA]
[GO:0000012 "single strand break repair" evidence=IEA] [GO:0000793
"condensed chromosome" evidence=IEA] [GO:0001701 "in utero
embryonic development" evidence=IEA] [GO:0002328 "pro-B cell
differentiation" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005886 "plasma membrane"
evidence=IEA] [GO:0005925 "focal adhesion" evidence=IEA]
[GO:0005958 "DNA-dependent protein kinase-DNA ligase 4 complex"
evidence=IEA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IEA] [GO:0006303 "double-strand break repair via
nonhomologous end joining" evidence=IEA] [GO:0007417 "central
nervous system development" evidence=IEA] [GO:0008022 "protein
C-terminus binding" evidence=IEA] [GO:0008283 "cell proliferation"
evidence=IEA] [GO:0010165 "response to X-ray" evidence=IEA]
[GO:0010332 "response to gamma radiation" evidence=IEA] [GO:0032807
"DNA ligase IV complex" evidence=IEA] [GO:0033077 "T cell
differentiation in thymus" evidence=IEA] [GO:0033152
"immunoglobulin V(D)J recombination" evidence=IEA] [GO:0033153 "T
cell receptor V(D)J recombination" evidence=IEA] [GO:0035019
"somatic stem cell maintenance" evidence=IEA] [GO:0043524 "negative
regulation of neuron apoptotic process" evidence=IEA] [GO:0045190
"isotype switching" evidence=IEA] [GO:0048146 "positive regulation
of fibroblast proliferation" evidence=IEA] InterPro:IPR000977
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 InterPro:IPR021536 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 Pfam:PF11411 PROSITE:PS00333 PROSITE:PS00697
PROSITE:PS50160 InterPro:IPR001357 Pfam:PF00533 GO:GO:0005886
GO:GO:0005524 GO:GO:0005737 GO:GO:0003677 GO:GO:0008283
GO:GO:0006260 GO:GO:0051402 GO:GO:0043524 GO:GO:0005925
GO:GO:0010332 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0000793 GO:GO:0048146 SMART:SM00292 SUPFAM:SSF52113
PROSITE:PS50172 GO:GO:0010165 GO:GO:0051276 GO:GO:0000012
GO:GO:0005958 GO:GO:0006303 GO:GO:0003910 GO:GO:0051103
Gene3D:1.10.3260.10 SUPFAM:SSF117018 TIGRFAMs:TIGR00574
GO:GO:0006297 OMA:HMCPSTK GO:GO:0032807 IPI:IPI00651271
GO:GO:0051102 GeneTree:ENSGT00700000104500 EMBL:AADN02029083
Ensembl:ENSGALT00000027230 Uniprot:F1P275
Length = 912
Score = 312 (114.9 bits), Expect = 1.1e-27, Sum P(2) = 1.1e-27
Identities = 99/326 (30%), Positives = 157/326 (48%)
Query: 434 PMLAKPTKGVSEIVNKFQDMEFTCEYKYDGERAQIHYLEDGSV-EIYSRNAERNTGKF-- 490
PMLA V +I + + F E K DGER Q+H +DG V + +SRN T +F
Sbjct: 253 PMLAA-IADVQQIEKQMNNQVFYIETKLDGERMQMH--KDGDVYKYFSRNGFDYTQQFGA 309
Query: 491 -P-DVVLA--VSRLKKPSVRSFVLDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIKVD 546
P D L + + K +++ +LD E++AY+ E Q + + ++ V SD++
Sbjct: 310 SPVDGSLTPFIHNVFKSDIQNCILDGEMMAYNPETQTFMQ-KGNKFDIKRMVEDSDLQTC 368
Query: 547 VCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAA 606
C+ FD+L N Q L E L R + L + F G ++ E+ L+ A
Sbjct: 369 FCV--FDVLMINDQKLAHESLSTRYKILSNVFTPLTGRIHVVHKKSARTRKEVIDALNEA 426
Query: 607 VDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGV 666
+D EG+++K D +TY+P KR WLK+K +Y+ + D LDL+ + + G+G R G+
Sbjct: 427 IDNREEGIMVK--DPMSTYKPDKRGEGWLKIKPEYVNGLMDELDLLIVGGYWGKGSRGGM 484
Query: 667 YGAFLLACYDSN--NEE---FQSICKIGTGFSEAMLEERSSSLRSKVIP---KPRPYYRF 718
FL A ++ NE+ F SIC++G+G++ L + L P K P
Sbjct: 485 MSHFLCAIAETPAPNEKPTVFHSICRVGSGYTMKELYDLGLKLAKHWKPYNRKDPPCNIL 544
Query: 719 ADTISPDVWFEPTERPETSNSPASIV 744
T P+++ EP A IV
Sbjct: 545 CGTEKPEMYIEPCNSVIVQIKAAEIV 570
Score = 82 (33.9 bits), Expect = 1.1e-27, Sum P(2) = 1.1e-27
Identities = 30/116 (25%), Positives = 58/116 (50%)
Query: 279 EMGDLGLVAKASRSSQSMMRKPDPLTITKVFDTFRLIAKE-AGKDSQEKKKNRIKALLVA 337
+ GD ++A +S R LT+ +V + IA A K+ KK+ ++ L+
Sbjct: 126 DAGDFAMIAYFVLKPRSPKR--GRLTVEQVNELLDAIANNNAAKNKGLVKKSLLQ-LITQ 182
Query: 338 ATDCEPQYLIRLLQSKLRIGLAEQTLLAALGQAAVYNEQHSKPPPNIQSPLEEAAK 393
+T E ++LIR++ L++G+++QT+ + A E H N+ + LE+ +
Sbjct: 183 STALEQKWLIRMIIKDLKLGVSQQTIFSIFHPDAA--ELH-----NVTTDLEKVCR 231
>UNIPROTKB|Q90YB1 [details] [associations]
symbol:LIG4 "DNA ligase 4" species:9031 "Gallus gallus"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0051103 "DNA ligation
involved in DNA repair" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0051301 "cell division"
evidence=IEA] [GO:0003910 "DNA ligase (ATP) activity" evidence=IBA]
[GO:0005694 "chromosome" evidence=IBA] [GO:0006266 "DNA ligation"
evidence=IBA] [GO:0006273 "lagging strand elongation" evidence=IBA]
[GO:0006289 "nucleotide-excision repair" evidence=IBA] [GO:0006303
"double-strand break repair via nonhomologous end joining"
evidence=IBA;TAS] [GO:0032807 "DNA ligase IV complex" evidence=IBA]
[GO:0033151 "V(D)J recombination" evidence=IBA] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0006302 "double-strand break repair" evidence=TAS] [GO:0070419
"nonhomologous end joining complex" evidence=ISS]
InterPro:IPR000977 InterPro:IPR012308 InterPro:IPR012309
InterPro:IPR012310 InterPro:IPR016059 InterPro:IPR021536
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 Pfam:PF11411 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 InterPro:IPR001357 Pfam:PF00533
GO:GO:0005524 GO:GO:0005694 GO:GO:0005654 GO:GO:0051301
GO:GO:0046872 GO:GO:0003677 GO:GO:0007049 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 SMART:SM00292 SUPFAM:SSF52113
PROSITE:PS50172 GO:GO:0006303 GO:GO:0006289 Reactome:REACT_115612
GO:GO:0006273 eggNOG:COG1793 GO:GO:0003910 GO:GO:0051103
Gene3D:1.10.3260.10 SUPFAM:SSF117018 TIGRFAMs:TIGR00574 KO:K10777
GO:GO:0032807 EMBL:AB058600 EMBL:AJ720061 IPI:IPI00651271
RefSeq:NP_001025987.1 UniGene:Gga.1352 ProteinModelPortal:Q90YB1
SMR:Q90YB1 STRING:Q90YB1 PRIDE:Q90YB1 GeneID:418764 KEGG:gga:418764
CTD:3981 HOGENOM:HOG000007831 HOVERGEN:HBG005516 InParanoid:Q90YB1
OrthoDB:EOG4Q58NP NextBio:20821908 GO:GO:0070419 GO:GO:0033151
Uniprot:Q90YB1
Length = 912
Score = 310 (114.2 bits), Expect = 1.8e-27, Sum P(2) = 1.8e-27
Identities = 99/326 (30%), Positives = 157/326 (48%)
Query: 434 PMLAKPTKGVSEIVNKFQDMEFTCEYKYDGERAQIHYLEDGSV-EIYSRNAERNTGKF-- 490
PMLA V +I + + F E K DGER Q+H +DG V + +SRN T +F
Sbjct: 253 PMLAA-IADVQQIEKQMNNQVFYIETKLDGERMQMH--KDGDVYKYFSRNGFDYTQQFGA 309
Query: 491 -P-DVVLA--VSRLKKPSVRSFVLDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIKVD 546
P D L + + K +++ +LD E++AY+ E Q + + ++ V SD++
Sbjct: 310 SPVDGSLTPFIHNVFKSDIQNCILDGEMMAYNPETQTFMQ-KGNKFDIKRMVEDSDLQTC 368
Query: 547 VCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAA 606
C+ FD+L N Q L E L R + L + F G ++ E+ L+ A
Sbjct: 369 FCV--FDVLMINDQKLAHESLSKRYKILSNVFTPLTGRIHVVHKKSARTRKEVIDALNEA 426
Query: 607 VDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGV 666
+D EG+++K D +TY+P KR WLK+K +Y+ + D LDL+ + + G+G R G+
Sbjct: 427 IDNREEGIMVK--DPMSTYKPDKRGEGWLKIKPEYVNGLMDELDLLIVGGYWGKGSRGGM 484
Query: 667 YGAFLLACYDSN--NEE---FQSICKIGTGFSEAMLEERSSSLRSKVIP---KPRPYYRF 718
FL A ++ NE+ F SIC++G+G++ L + L P K P
Sbjct: 485 MSHFLCAVAETPAPNEKPTVFHSICRVGSGYTMKELYDLGLKLAKHWKPYNRKDPPCNIL 544
Query: 719 ADTISPDVWFEPTERPETSNSPASIV 744
T P+++ EP A IV
Sbjct: 545 CGTEKPEMYIEPCNSVIVQIKAAEIV 570
Score = 82 (33.9 bits), Expect = 1.8e-27, Sum P(2) = 1.8e-27
Identities = 30/116 (25%), Positives = 58/116 (50%)
Query: 279 EMGDLGLVAKASRSSQSMMRKPDPLTITKVFDTFRLIAKE-AGKDSQEKKKNRIKALLVA 337
+ GD ++A +S R LT+ +V + IA A K+ KK+ ++ L+
Sbjct: 126 DAGDFAMIAYFVLKPRSPKR--GRLTVEQVNELLDAIANNNAAKNKGLVKKSLLQ-LITQ 182
Query: 338 ATDCEPQYLIRLLQSKLRIGLAEQTLLAALGQAAVYNEQHSKPPPNIQSPLEEAAK 393
+T E ++LIR++ L++G+++QT+ + A E H N+ + LE+ +
Sbjct: 183 STALEQKWLIRMIIKDLKLGVSQQTIFSIFHPDAA--ELH-----NVTTDLEKVCR 231
>RGD|1309875 [details] [associations]
symbol:Lig3 "ligase III, DNA, ATP-dependent" species:10116
"Rattus norvegicus" [GO:0000794 "condensed nuclear chromosome"
evidence=ISO] [GO:0000795 "synaptonemal complex" evidence=IEA;ISO]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003909 "DNA ligase activity"
evidence=ISO] [GO:0003910 "DNA ligase (ATP) activity" evidence=IBA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=ISO;IBA] [GO:0005694 "chromosome" evidence=IBA]
[GO:0005739 "mitochondrion" evidence=IBA] [GO:0006266 "DNA
ligation" evidence=IBA] [GO:0006273 "lagging strand elongation"
evidence=IBA] [GO:0006289 "nucleotide-excision repair"
evidence=IBA] [GO:0006303 "double-strand break repair via
nonhomologous end joining" evidence=IEA;ISO] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0043504 "mitochondrial DNA repair" evidence=IEA;ISO]
[GO:0045910 "negative regulation of DNA recombination"
evidence=IEA;ISO] [GO:0051103 "DNA ligation involved in DNA repair"
evidence=IEA] [GO:0033151 "V(D)J recombination" evidence=ISO]
InterPro:IPR000977 InterPro:IPR001510 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF00645 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 PROSITE:PS00333
PROSITE:PS00347 PROSITE:PS00697 PROSITE:PS50064 PROSITE:PS50160
RGD:1309875 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694 GO:GO:0003677
GO:GO:0008270 GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0006289 GO:GO:0006273 eggNOG:COG1793
GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 KO:K10776 CTD:3980 HOGENOM:HOG000007653
HOVERGEN:HBG005515 Gene3D:3.30.1740.10 GeneTree:ENSGT00700000104500
EMBL:BC085959 IPI:IPI00565239 RefSeq:NP_001012011.1
UniGene:Rn.230056 SMR:Q5U2M4 STRING:Q5U2M4
Ensembl:ENSRNOT00000055982 GeneID:303369 KEGG:rno:303369
NextBio:651212 Genevestigator:Q5U2M4 Uniprot:Q5U2M4
Length = 943
Score = 351 (128.6 bits), Expect = 2.9e-27, Sum P(2) = 2.9e-27
Identities = 89/287 (31%), Positives = 141/287 (49%)
Query: 431 PIGPMLAKPTKGVSEIVNKFQDMEFTCEYKYDGERAQIHYLEDGSVEIYSRNAE----RN 486
P+ PMLA+ K + + K + F+ E KYDGER Q+H D +SR+ +
Sbjct: 482 PVQPMLAEACKSIEYAMKKCPNGMFS-EIKYDGERVQVHKKGD-HFSYFSRSLKPVLPHK 539
Query: 487 TGKFPDVVLAVSRLKKPSVRSFVLDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIKVD 546
F D + P +S +LD E++ D K LPF TL K + D +
Sbjct: 540 VAHFKDYIPKAF----PGGQSMILDSEVLLIDNNTGKPLPFGTLGVH--KKAAFQD--AN 591
Query: 547 VCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAA 606
VC++ FD +Y N L+ L RR+ L+D+ E F+ ++ ++
Sbjct: 592 VCLFVFDCIYFNDVSLMDRPLCERRKFLHDNMVEIRNRIMFSEMKQVTKASDLADMINRV 651
Query: 607 VDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIE--SIGDSLDLVPIAAFHGRGKRT 664
+ EGL++K D TYEP KR +WLK+KKDY+ ++ D+ DLV + AF+G+G +
Sbjct: 652 IREGLEGLVLK--DVKGTYEPGKR--HWLKVKKDYLNEGAMADTADLVVLGAFYGQGSKG 707
Query: 665 GVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPK 711
G+ FL+ CYD +++++ ++ K G +A L L I K
Sbjct: 708 GMMSIFLMGCYDPDSQKWCTVTKCAGGHDDATLARLQKELDMVKISK 754
Score = 37 (18.1 bits), Expect = 2.9e-27, Sum P(2) = 2.9e-27
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 225 ETTPEDLVPVVYLAANKIAPAHE 247
E P P L+A+K P H+
Sbjct: 239 EQDPSSPAPKTSLSASKCDPKHK 261
>UNIPROTKB|D4A2K2 [details] [associations]
symbol:Lig3 "DNA ligase" species:10116 "Rattus norvegicus"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003910 "DNA ligase
(ATP) activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0051103 "DNA ligation involved in DNA
repair" evidence=IEA] InterPro:IPR000977 InterPro:IPR001510
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF00645 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 PROSITE:PS00333 PROSITE:PS00347 PROSITE:PS00697
PROSITE:PS50064 PROSITE:PS50160 RGD:1309875 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0008270 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0003910
GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 OrthoDB:EOG44BB1K Gene3D:3.30.1740.10
IPI:IPI00563728 PRIDE:D4A2K2 Ensembl:ENSRNOT00000047849
ArrayExpress:D4A2K2 Uniprot:D4A2K2
Length = 955
Score = 351 (128.6 bits), Expect = 3.0e-27, Sum P(2) = 3.0e-27
Identities = 89/287 (31%), Positives = 141/287 (49%)
Query: 431 PIGPMLAKPTKGVSEIVNKFQDMEFTCEYKYDGERAQIHYLEDGSVEIYSRNAE----RN 486
P+ PMLA+ K + + K + F+ E KYDGER Q+H D +SR+ +
Sbjct: 486 PVQPMLAEACKSIEYAMKKCPNGMFS-EIKYDGERVQVHKKGD-HFSYFSRSLKPVLPHK 543
Query: 487 TGKFPDVVLAVSRLKKPSVRSFVLDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIKVD 546
F D + P +S +LD E++ D K LPF TL K + D +
Sbjct: 544 VAHFKDYIPKAF----PGGQSMILDSEVLLIDNNTGKPLPFGTLGVH--KKAAFQD--AN 595
Query: 547 VCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAA 606
VC++ FD +Y N L+ L RR+ L+D+ E F+ ++ ++
Sbjct: 596 VCLFVFDCIYFNDVSLMDRPLCERRKFLHDNMVEIRNRIMFSEMKQVTKASDLADMINRV 655
Query: 607 VDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIE--SIGDSLDLVPIAAFHGRGKRT 664
+ EGL++K D TYEP KR +WLK+KKDY+ ++ D+ DLV + AF+G+G +
Sbjct: 656 IREGLEGLVLK--DVKGTYEPGKR--HWLKVKKDYLNEGAMADTADLVVLGAFYGQGSKG 711
Query: 665 GVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPK 711
G+ FL+ CYD +++++ ++ K G +A L L I K
Sbjct: 712 GMMSIFLMGCYDPDSQKWCTVTKCAGGHDDATLARLQKELDMVKISK 758
Score = 37 (18.1 bits), Expect = 3.0e-27, Sum P(2) = 3.0e-27
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 225 ETTPEDLVPVVYLAANKIAPAHE 247
E P P L+A+K P H+
Sbjct: 239 EQDPSSPAPKTSLSASKCDPKHK 261
>UNIPROTKB|D4A837 [details] [associations]
symbol:Lig3 "DNA ligase" species:10116 "Rattus norvegicus"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003910 "DNA ligase
(ATP) activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0051103 "DNA ligation involved in DNA
repair" evidence=IEA] InterPro:IPR000977 InterPro:IPR001510
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF00645 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 PROSITE:PS00333 PROSITE:PS00347 PROSITE:PS00697
PROSITE:PS50064 PROSITE:PS50160 InterPro:IPR001357 RGD:1309875
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260
GO:GO:0008270 GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 Gene3D:3.30.1740.10 IPI:IPI00370404
Ensembl:ENSRNOT00000029555 ArrayExpress:D4A837 Uniprot:D4A837
Length = 1014
Score = 351 (128.6 bits), Expect = 3.8e-27, Sum P(2) = 3.8e-27
Identities = 89/287 (31%), Positives = 141/287 (49%)
Query: 431 PIGPMLAKPTKGVSEIVNKFQDMEFTCEYKYDGERAQIHYLEDGSVEIYSRNAE----RN 486
P+ PMLA+ K + + K + F+ E KYDGER Q+H D +SR+ +
Sbjct: 486 PVQPMLAEACKSIEYAMKKCPNGMFS-EIKYDGERVQVHKKGD-HFSYFSRSLKPVLPHK 543
Query: 487 TGKFPDVVLAVSRLKKPSVRSFVLDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIKVD 546
F D + P +S +LD E++ D K LPF TL K + D +
Sbjct: 544 VAHFKDYIPKAF----PGGQSMILDSEVLLIDNNTGKPLPFGTLGVH--KKAAFQD--AN 595
Query: 547 VCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAA 606
VC++ FD +Y N L+ L RR+ L+D+ E F+ ++ ++
Sbjct: 596 VCLFVFDCIYFNDVSLMDRPLCERRKFLHDNMVEIRNRIMFSEMKQVTKASDLADMINRV 655
Query: 607 VDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIE--SIGDSLDLVPIAAFHGRGKRT 664
+ EGL++K D TYEP KR +WLK+KKDY+ ++ D+ DLV + AF+G+G +
Sbjct: 656 IREGLEGLVLK--DVKGTYEPGKR--HWLKVKKDYLNEGAMADTADLVVLGAFYGQGSKG 711
Query: 665 GVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPK 711
G+ FL+ CYD +++++ ++ K G +A L L I K
Sbjct: 712 GMMSIFLMGCYDPDSQKWCTVTKCAGGHDDATLARLQKELDMVKISK 758
Score = 37 (18.1 bits), Expect = 3.8e-27, Sum P(2) = 3.8e-27
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 225 ETTPEDLVPVVYLAANKIAPAHE 247
E P P L+A+K P H+
Sbjct: 239 EQDPSSPAPKTSLSASKCDPKHK 261
>MGI|MGI:109152 [details] [associations]
symbol:Lig3 "ligase III, DNA, ATP-dependent" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000794 "condensed nuclear chromosome" evidence=IDA]
[GO:0000795 "synaptonemal complex" evidence=IDA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003909 "DNA ligase activity"
evidence=ISO] [GO:0003910 "DNA ligase (ATP) activity" evidence=IBA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IBA]
[GO:0005694 "chromosome" evidence=IBA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0006266 "DNA ligation" evidence=IBA]
[GO:0006273 "lagging strand elongation" evidence=IBA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IBA] [GO:0006303 "double-strand break repair via
nonhomologous end joining" evidence=IMP] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0016874 "ligase
activity" evidence=IEA] [GO:0043504 "mitochondrial DNA repair"
evidence=IMP] [GO:0045910 "negative regulation of DNA
recombination" evidence=IMP] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0051103 "DNA ligation involved in DNA repair"
evidence=IEA] [GO:0051301 "cell division" evidence=IEA]
InterPro:IPR000977 InterPro:IPR001510 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF00645 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 PROSITE:PS00333
PROSITE:PS00347 PROSITE:PS00697 PROSITE:PS50064 PROSITE:PS50160
InterPro:IPR001357 EMBL:U66057 MGI:MGI:109152 GO:GO:0005739
GO:GO:0005524 GO:GO:0005634 GO:GO:0051301 GO:GO:0046872
GO:GO:0003677 GO:GO:0006260 GO:GO:0008270 GO:GO:0007049
GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0006303
GO:GO:0006289 GO:GO:0045910 GO:GO:0043504 GO:GO:0006273
eggNOG:COG1793 GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10
SUPFAM:SSF117018 TIGRFAMs:TIGR00574 HOGENOM:HOG000007653
HOVERGEN:HBG005515 OrthoDB:EOG44BB1K Gene3D:3.30.1740.10
EMBL:U66058 EMBL:AL645594 IPI:IPI00124272 IPI:IPI00230471
UniGene:Mm.277136 ProteinModelPortal:P97386 SMR:P97386
IntAct:P97386 STRING:P97386 PhosphoSite:P97386 PaxDb:P97386
PRIDE:P97386 InParanoid:P97386 Bgee:P97386 CleanEx:MM_LIG3
Genevestigator:P97386 GermOnline:ENSMUSG00000020697 GO:GO:0000795
Uniprot:P97386
Length = 1015
Score = 350 (128.3 bits), Expect = 4.9e-27, Sum P(2) = 4.9e-27
Identities = 87/280 (31%), Positives = 139/280 (49%)
Query: 431 PIGPMLAKPTKGVSEIVNKFQDMEFTCEYKYDGERAQIHYLEDGSVEIYSRNAE----RN 486
P+ PMLA+ K + + K + F+ E KYDGER Q+H D +SR+ +
Sbjct: 485 PVQPMLAEACKSIEYAMKKCPNGMFS-EIKYDGERVQVHKKGD-HFSYFSRSLKPVLPHK 542
Query: 487 TGKFPDVVLAVSRLKKPSVRSFVLDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIKVD 546
F D + P +S +LD E++ D K LPF TL K + D +
Sbjct: 543 VAHFKDYIPKAF----PGGQSMILDSEVLLIDNNTGKPLPFGTLGVH--KKAAFQD--AN 594
Query: 547 VCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAA 606
VC++ FD +Y N L+ L RR+ L+D+ E F+ ++ ++
Sbjct: 595 VCLFVFDCIYFNDVSLMDRPLCERRKFLHDNMVEIRNRIMFSEMKQVTKASDLADMINRV 654
Query: 607 VDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIE--SIGDSLDLVPIAAFHGRGKRT 664
+ EGL++K D TYEP KR +WLK+KKDY+ ++ D+ DLV + AF+G+G +
Sbjct: 655 IREGLEGLVLK--DVKGTYEPGKR--HWLKVKKDYLNEGAMADTADLVVLGAFYGQGSKG 710
Query: 665 GVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSL 704
G+ FL+ CYD +++++ ++ K G +A L L
Sbjct: 711 GMMSIFLMGCYDPDSQKWCTVTKCAGGHDDATLARLQKEL 750
Score = 37 (18.1 bits), Expect = 4.9e-27, Sum P(2) = 4.9e-27
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 225 ETTPEDLVPVVYLAANKIAPAHE 247
E P P L+A+K P H+
Sbjct: 239 EQAPSSPAPGTSLSASKCDPKHK 261
>FB|FBgn0038035 [details] [associations]
symbol:lig3 "DNA ligase III" species:7227 "Drosophila
melanogaster" [GO:0003910 "DNA ligase (ATP) activity"
evidence=ISS;IBA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0051103 "DNA
ligation involved in DNA repair" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IBA]
[GO:0006289 "nucleotide-excision repair" evidence=IBA] [GO:0005739
"mitochondrion" evidence=IBA] [GO:0006266 "DNA ligation"
evidence=IBA] [GO:0005694 "chromosome" evidence=IBA] [GO:0006273
"lagging strand elongation" evidence=IBA] InterPro:IPR000977
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679
PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160 InterPro:IPR001357
EMBL:AE014297 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694
GO:GO:0003677 GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GO:GO:0006289 GO:GO:0006273 GO:GO:0003910 GO:GO:0051103
Gene3D:1.10.3260.10 SUPFAM:SSF117018 TIGRFAMs:TIGR00574 KO:K10776
CTD:3980 GeneTree:ENSGT00700000104500 FlyBase:FBgn0038035
EMBL:BT120103 RefSeq:NP_650187.2 UniGene:Dm.13380 SMR:Q9VG84
IntAct:Q9VG84 MINT:MINT-1007361 STRING:Q9VG84
EnsemblMetazoa:FBtr0082600 GeneID:41518 KEGG:dme:Dmel_CG17227
InParanoid:Q9VG84 OMA:NEDNKLD GenomeRNAi:41518 NextBio:824218
Uniprot:Q9VG84
Length = 806
Score = 336 (123.3 bits), Expect = 6.3e-27, Sum P(2) = 6.3e-27
Identities = 91/282 (32%), Positives = 142/282 (50%)
Query: 431 PIGPMLAKPTKGVSEIVNKFQDMEFTCEYKYDGERAQIHYLEDGSVEIYSRNAERNTGKF 490
PI PMLA P K V + K ++ E KYDGER QIH + + +SRN +
Sbjct: 254 PISPMLASPCKSVEDAFKKSPTGLYS-EIKYDGERVQIHK-QGNDFKFFSRNLK------ 305
Query: 491 PDVVLAVSRLKK------PSVRSFVLDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIK 544
P V + LKK P +LD EI+ D + +LPF +L A K + ++
Sbjct: 306 PVVDHKIRALKKYIPQAFPGGGEMILDSEIILVDTDTGALLPFGSLG--AHKKQTFANAA 363
Query: 545 VDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLD 604
V C++ FD + +G+ L Q R RRE L + + Q + + E+
Sbjct: 364 V--CLFVFDCILYDGEDLTQLPFRKRREILEQNIQPIKSHVQLSESEFLKTTRELAAMTA 421
Query: 605 AAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYI--ESIGDSLDLVPIAAFHGRGK 662
+ A+ EG+++K+ +TY+P KR NWLK+KKDY+ + D+ DLV + A++G GK
Sbjct: 422 RVLHANLEGVVLKSPT--STYQPGKR--NWLKVKKDYLFDGKMADTADLVVLGAWYGSGK 477
Query: 663 RTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSL 704
+ G FL+ CYD+ ++++ K+ +G +A E SL
Sbjct: 478 KGGTLSIFLMGCYDAFGRLWKTVTKVHSGLDDATNAEVHKSL 519
Score = 163 (62.4 bits), Expect = 3.5e-08, P = 3.5e-08
Identities = 73/348 (20%), Positives = 149/348 (42%)
Query: 242 IAPAHEGLELGIGDASIIKALAEACGRTESHVKKQYQEMGDLGLVAKASRSSQSMMRKPD 301
+ PA + + ++IK + + + ++ GD V++ R + +K
Sbjct: 80 LIPAANQRVYNLQNKALIKLFSRIFNADQQQMHLDLEQDGD---VSETLRKHFAASKKLK 136
Query: 302 PLTITKVF--DTFRLIAKEAGKDSQEKKKNRIKALLVAATDCEPQYLIRLLQSKLRIGLA 359
P +K++ + ++ + ++++ + ++ L ATD + + IRL++ LRI
Sbjct: 137 PQKQSKLYLQEVEEMLLHLVERTKEDEQTDLLQKLCSKATDLDLRTFIRLVKHDLRINAR 196
Query: 360 EQTLLAALGQAAVYNEQHSKPPPNIQSPLEEAAKIVKQVFSVLPVYEKIVPALLTDGVWN 419
+ +L A G A Q S+ ++ + +E+ A + ++ PV +
Sbjct: 197 ARHILDAFGPDAYPAYQSSR---DLVAIVEQFATKENKNYASSPVKKT-----------K 242
Query: 420 LSNTCSFTPGIPIGPMLAKPTKGVSEIVNKFQDMEFTCEYKYDGERAQIHYLEDGSVEIY 479
+++ + PI PMLA P K V + K ++ E KYDGER QIH + + +
Sbjct: 243 KTSSSAIQVMTPISPMLASPCKSVEDAFKKSPTGLYS-EIKYDGERVQIHK-QGNDFKFF 300
Query: 480 SRNAERNTGKFPDVVLAVSRLKKPSVRSFVLDCEIVAYDREKQKILPFQTLSTRARK--- 536
SRN + + P +LD EI+ D + +LPF +L ++
Sbjct: 301 SRNLKPVVDHKIRALKKYIPQAFPGGGEMILDSEIILVDTDTGALLPFGSLGAHKKQTFA 360
Query: 537 NVSLSDIKVDVCIYAFDIL----YRNGQPLLQEQLRVRREHLYDSFEE 580
N ++ D +Y + L +R + +L++ ++ + H+ S E
Sbjct: 361 NAAVCLFVFDCILYDGEDLTQLPFRKRREILEQNIQPIKSHVQLSESE 408
Score = 47 (21.6 bits), Expect = 6.3e-27, Sum P(2) = 6.3e-27
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 310 DTFRLIAKE-AGKDSQEKKKNRIK 332
DTFR I E AG+ S KK R++
Sbjct: 34 DTFRRICDEIAGESSYLKKAERLQ 57
>UNIPROTKB|F1P394 [details] [associations]
symbol:LIG3 "DNA ligase" species:9031 "Gallus gallus"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0051103 "DNA ligation involved in DNA
repair" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0003910 "DNA ligase (ATP)
activity" evidence=IEA] [GO:0000795 "synaptonemal complex"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0006303
"double-strand break repair via nonhomologous end joining"
evidence=IEA] [GO:0043504 "mitochondrial DNA repair" evidence=IEA]
[GO:0045910 "negative regulation of DNA recombination"
evidence=IEA] InterPro:IPR000977 InterPro:IPR001510
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF00645 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 PROSITE:PS00333 PROSITE:PS00347 PROSITE:PS00697
PROSITE:PS50064 PROSITE:PS50160 InterPro:IPR001357 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0006260 GO:GO:0008270
GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0003910
GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 OMA:WSETDLL Gene3D:3.30.1740.10
GeneTree:ENSGT00700000104500 EMBL:AADN02025943 IPI:IPI00586176
Ensembl:ENSGALT00000003599 Uniprot:F1P394
Length = 900
Score = 327 (120.2 bits), Expect = 2.4e-26, Sum P(2) = 2.4e-26
Identities = 89/287 (31%), Positives = 137/287 (47%)
Query: 431 PIGPMLAKPTKGVSEIVNKFQDMEFTCEYKYDGERAQIHYLEDGSVEIYSRNAE----RN 486
P+ PMLA+ K + + K + + E KYDGER Q+H D +SR+ +
Sbjct: 391 PVQPMLAEACKSIEYAMKKCPNGMYA-EIKYDGERVQVHKNGD-HFSYFSRSLKPVLPHK 448
Query: 487 TGKFPDVVLAVSRLKKPSVRSFVLDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIKVD 546
F D + P S +LD E++ D + K LPF +L K + D +
Sbjct: 449 VAHFKDFIPQAF----PGGHSMILDSEVLLIDNKTGKPLPFGSLGVH--KKAAFQD--AN 500
Query: 547 VCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAA 606
VC++ FD +Y N L+ LR RR+ L+D+ E P + D
Sbjct: 501 VCLFVFDCIYFNDISLMDRPLRERRKFLHDNMVEIPPDPVLGDEARHKSFRSGR--YDHV 558
Query: 607 VDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIE--SIGDSLDLVPIAAFHGRGKRT 664
+ EGL++K D YEP KR +WLK+KKDY+ ++ D+ DLV + AF+G+G +
Sbjct: 559 IREGLEGLVLK--DIKGNYEPGKR--HWLKVKKDYLNEGAMADTADLVVLGAFYGKGSKG 614
Query: 665 GVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPK 711
G+ FL+ CYD +E++ ++ K G +A L + L I K
Sbjct: 615 GMMSIFLMGCYDPKSEKWCTVTKCAGGHDDATLARLQTELDMVKISK 661
Score = 53 (23.7 bits), Expect = 2.4e-26, Sum P(2) = 2.4e-26
Identities = 26/103 (25%), Positives = 45/103 (43%)
Query: 250 ELGIGDASII-KALAEACGRTESHVKKQYQEMGDLGLVAKASRSSQSMMRKPDPLTITKV 308
EL G+ +I ++EA + S KK+ L + S + + +P K
Sbjct: 81 ELQDGEKELITNFISEATSKAASTPKKKATVQAKLTATGQISSPQKDPLANVNP----KK 136
Query: 309 FDTFRLIAKEAGKDSQEKKKNRIKALLVAATDCEPQYLIRLLQ 351
F F AK K+S+E N ++A +C+P++ LL+
Sbjct: 137 FSGFT--AKP--KNSEEVSANSSHNSSLSAKNCDPKHKDCLLR 175
>UNIPROTKB|E2R0G7 [details] [associations]
symbol:LIG4 "DNA ligase" species:9615 "Canis lupus
familiaris" [GO:0051402 "neuron apoptotic process" evidence=IEA]
[GO:0051276 "chromosome organization" evidence=IEA] [GO:0051103
"DNA ligation involved in DNA repair" evidence=IEA] [GO:0051102
"DNA ligation involved in DNA recombination" evidence=IEA]
[GO:0050769 "positive regulation of neurogenesis" evidence=IEA]
[GO:0048146 "positive regulation of fibroblast proliferation"
evidence=IEA] [GO:0045190 "isotype switching" evidence=IEA]
[GO:0043524 "negative regulation of neuron apoptotic process"
evidence=IEA] [GO:0035019 "somatic stem cell maintenance"
evidence=IEA] [GO:0033153 "T cell receptor V(D)J recombination"
evidence=IEA] [GO:0033152 "immunoglobulin V(D)J recombination"
evidence=IEA] [GO:0033077 "T cell differentiation in thymus"
evidence=IEA] [GO:0032807 "DNA ligase IV complex" evidence=IEA]
[GO:0010332 "response to gamma radiation" evidence=IEA] [GO:0010165
"response to X-ray" evidence=IEA] [GO:0008283 "cell proliferation"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0007417 "central nervous system development"
evidence=IEA] [GO:0006303 "double-strand break repair via
nonhomologous end joining" evidence=IEA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IEA]
[GO:0005958 "DNA-dependent protein kinase-DNA ligase 4 complex"
evidence=IEA] [GO:0005925 "focal adhesion" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0002328 "pro-B cell
differentiation" evidence=IEA] [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0000793 "condensed chromosome"
evidence=IEA] [GO:0000012 "single strand break repair"
evidence=IEA] [GO:0003910 "DNA ligase (ATP) activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] InterPro:IPR000977
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 InterPro:IPR021536 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 Pfam:PF11411 PROSITE:PS00333 PROSITE:PS00697
PROSITE:PS50160 InterPro:IPR001357 Pfam:PF00533 GO:GO:0005886
GO:GO:0005524 GO:GO:0005737 GO:GO:0003677 GO:GO:0008283
GO:GO:0006260 GO:GO:0001701 GO:GO:0051402 GO:GO:0007417
GO:GO:0043524 GO:GO:0005925 GO:GO:0010332 GO:GO:0050769
GO:GO:0033077 GO:GO:0035019 GO:GO:0045190 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0000793 GO:GO:0048146
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0010165
GO:GO:0051276 GO:GO:0000012 GO:GO:0005958 GO:GO:0006303
GO:GO:0033153 GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10
SUPFAM:SSF117018 TIGRFAMs:TIGR00574 GO:GO:0006297 KO:K10777
OMA:HMCPSTK GO:GO:0032807 CTD:3981 GO:GO:0051102 GO:GO:0033152
GO:GO:0002328 GeneTree:ENSGT00700000104500 EMBL:AAEX03013370
RefSeq:XP_542663.2 ProteinModelPortal:E2R0G7
Ensembl:ENSCAFT00000009725 GeneID:485544 KEGG:cfa:485544
NextBio:20859524 Uniprot:E2R0G7
Length = 911
Score = 297 (109.6 bits), Expect = 7.9e-26, Sum P(2) = 7.9e-26
Identities = 101/347 (29%), Positives = 160/347 (46%)
Query: 434 PMLAKPTKGVSEIVNKFQDMEFTCEYKYDGERAQIHYLEDGSV-EIYSRNAERNTGKFPD 492
PMLA + I + F E K DGER Q+H +DG V + +SRN T +F D
Sbjct: 248 PMLAA-IADIERIEKDMKHQSFYIETKLDGERMQMH--KDGDVYQYFSRNGYNYTDQFGD 304
Query: 493 VVLAVSRLKKPSVRS-FVLDCEIVAYDREKQKILP-FQTLSTRARK-NVS--LSDIKVDV 547
S P + S F D +I D E P QT + K ++ + D +
Sbjct: 305 SPREGSLT--PFIHSAFKTDVQICILDGEMMAFNPNTQTFMQKGNKFDIKRMVEDSDLQT 362
Query: 548 CIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAV 607
C FD+L N + L +E L+ R E L F PG + + E+ L+ A+
Sbjct: 363 CYCVFDVLMVNNKKLGRETLKKRYEILTSVFTPIPGRIEIVQKTQAHTKKEVIDALNEAI 422
Query: 608 DASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVY 667
D EG++IK + Y+P KR WLK+K +Y++ + D LD++ + + G+G R G+
Sbjct: 423 DKREEGIMIK--HPLSIYKPDKRGEGWLKIKPEYVDGLMDELDILIVGGYWGKGSRGGMM 480
Query: 668 GAFLLACYDSN--NEE---FQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTI 722
FL A + E+ F ++C++G+G++ L + L K+ +P+++ A
Sbjct: 481 SHFLCAVAEKPPPGEKPSVFHTLCRVGSGYTMKELYD----LGLKLAKHWKPFHKKA--- 533
Query: 723 SPDVWFEPTERPETSNSPA-SIVYDSQITCLPSSYMPFSRSYFRFGR 768
P TE+PE P S++ + T + SS M + RF R
Sbjct: 534 LPSSILCGTEKPEVYIEPCNSVIVQVKATEIVSSDMYKTGCTLRFPR 580
Score = 80 (33.2 bits), Expect = 7.9e-26, Sum P(2) = 7.9e-26
Identities = 27/115 (23%), Positives = 53/115 (46%)
Query: 279 EMGDLGLVAKASRSSQSMMRKPDPLTITKVFDTFRLIAKEAGKDSQEKKKNRIKALLVAA 338
+ GD +A + + + LTI +V D IA ++ K + L+ +
Sbjct: 121 DAGDFATIAYFVLKPRCLQK--GSLTIQQVNDILDSIASNNSARKKDLIKKSLLQLITQS 178
Query: 339 TDCEPQYLIRLLQSKLRIGLAEQTLLAALGQAAVYNEQHSKPPPNIQSPLEEAAK 393
+ E ++LIR++ L++G +EQ++ +A A E H N+ + LE+ +
Sbjct: 179 SALEQKWLIRMIVKDLKLGFSEQSVFSAFHNDAA--ELH-----NVTTDLEKVCR 226
>ZFIN|ZDB-GENE-070820-10 [details] [associations]
symbol:lig4 "ligase IV, DNA, ATP-dependent"
species:7955 "Danio rerio" [GO:0051103 "DNA ligation involved in
DNA repair" evidence=IEA] [GO:0003910 "DNA ligase (ATP) activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0003909 "DNA ligase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016874 "ligase activity" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
InterPro:IPR000977 InterPro:IPR012308 InterPro:IPR012309
InterPro:IPR012310 InterPro:IPR016059 InterPro:IPR021536
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 Pfam:PF11411 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 InterPro:IPR001357 Pfam:PF00533
ZFIN:ZDB-GENE-070820-10 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0003910
GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 OMA:HMCPSTK GeneTree:ENSGT00700000104500
EMBL:BX908780 IPI:IPI00860741 Ensembl:ENSDART00000085648
Bgee:F1Q9E8 Uniprot:F1Q9E8
Length = 909
Score = 302 (111.4 bits), Expect = 1.2e-25, Sum P(2) = 1.2e-25
Identities = 90/311 (28%), Positives = 152/311 (48%)
Query: 434 PMLAKPTKGVSEIVNKFQDMEFTCEYKYDGERAQIHYLEDGSVEIYSRNAERNTGKF--- 490
PMLA + +I + + F E K DGER Q+H D + Y+RN+ T +F
Sbjct: 253 PMLAA-VANIRQIEKQMGNRPFYIETKLDGERIQLHKAGD-VYKYYTRNSYEYTQQFGAS 310
Query: 491 P---DVVLAVSRLKKPSVRSFVLDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIKVDV 547
P + + + P V + +LD E++AY+ + + + + ++ V SD++
Sbjct: 311 PLEGSLTPYIHNVFSPHVVNCILDGEMMAYNPKTETFMQ-KGSKFDIKRLVDDSDLQTCF 369
Query: 548 CIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAV 607
C+ FD+L N Q +E L+ R E L F G + + E+ L+ A+
Sbjct: 370 CV--FDVLLINNQKFGKEPLKKRYESLETVFSPIKGRIHLVSKSEGRTMQEVVNSLNEAI 427
Query: 608 DASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVY 667
D EG+++K D + Y+P KR WLK+K +Y++ + D LDL+ + + G+G+R+G+
Sbjct: 428 DNREEGIMVK--DPMSIYKPDKRGEGWLKIKPEYVDGLMDELDLLIVGGYWGKGRRSGML 485
Query: 668 GAFLLACYD--SNNEE---FQSICKIGTGFSEAMLEERSSSLRS--KVIPKPRPYYRF-A 719
FL A + S E+ F ++C+IG+G++ L + L KV K P
Sbjct: 486 SHFLCAVAEVPSPGEKPTVFHTLCRIGSGYTLKELYDLGVKLAKHWKVYNKNNPPAAILC 545
Query: 720 DTISPDVWFEP 730
T P+V+ EP
Sbjct: 546 GTEKPEVYIEP 556
Score = 73 (30.8 bits), Expect = 1.2e-25, Sum P(2) = 1.2e-25
Identities = 22/87 (25%), Positives = 46/87 (52%)
Query: 279 EMGDLGLVAKASRSSQSMMRKPDPLTITKVFDTFRLIA-KEAGKDSQEKKKNRIKALLVA 337
E GD L+A + + L+I +V D +A A K + KK+ + L+
Sbjct: 126 EAGDFALMAYFVLKKRCTSQ--GNLSIKEVNDFLDSVAINNASKQKDQVKKSLLH-LITQ 182
Query: 338 ATDCEPQYLIRLLQSKLRIGLAEQTLL 364
++ E ++LIR++ +++G++++T+L
Sbjct: 183 SSALEQKWLIRMILKDMKLGISKETVL 209
Score = 39 (18.8 bits), Expect = 4.2e-22, Sum P(2) = 4.2e-22
Identities = 13/50 (26%), Positives = 25/50 (50%)
Query: 142 PSPKKRKVNVNSVSAKEKIAELKSNIVLLKKKAGEFDPKMVACWEKGERV 191
PS +V+++ SA + + +NI ++K+ G P + GER+
Sbjct: 236 PSVSLSEVSIDLFSAFKPMLAAVANIRQIEKQMGN-RPFYIETKLDGERI 284
>RGD|1304639 [details] [associations]
symbol:Lig4 "ligase IV, DNA, ATP-dependent" species:10116
"Rattus norvegicus" [GO:0000012 "single strand break repair"
evidence=IEA;ISO] [GO:0000793 "condensed chromosome"
evidence=IEA;ISO] [GO:0001701 "in utero embryonic development"
evidence=IEA;ISO] [GO:0002328 "pro-B cell differentiation"
evidence=IEA;ISO] [GO:0003677 "DNA binding" evidence=ISO;IDA]
[GO:0003909 "DNA ligase activity" evidence=ISO] [GO:0003910 "DNA
ligase (ATP) activity" evidence=ISO;IDA] [GO:0005524 "ATP binding"
evidence=ISO;IDA] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005694 "chromosome" evidence=IBA] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0005886 "plasma membrane" evidence=IEA;ISO]
[GO:0005925 "focal adhesion" evidence=IEA;ISO] [GO:0005958
"DNA-dependent protein kinase-DNA ligase 4 complex"
evidence=IEA;ISO] [GO:0006266 "DNA ligation" evidence=ISO;IDA]
[GO:0006273 "lagging strand elongation" evidence=IBA] [GO:0006281
"DNA repair" evidence=ISO] [GO:0006289 "nucleotide-excision repair"
evidence=IBA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IEA;ISO] [GO:0006302 "double-strand break repair"
evidence=ISO] [GO:0006303 "double-strand break repair via
nonhomologous end joining" evidence=ISO;IBA] [GO:0007417 "central
nervous system development" evidence=IEA;ISO] [GO:0008022 "protein
C-terminus binding" evidence=IEA;ISO] [GO:0008283 "cell
proliferation" evidence=IEA;ISO] [GO:0010165 "response to X-ray"
evidence=IEA;ISO] [GO:0010212 "response to ionizing radiation"
evidence=ISO] [GO:0010332 "response to gamma radiation"
evidence=IEA;ISO] [GO:0016874 "ligase activity" evidence=ISO]
[GO:0032807 "DNA ligase IV complex" evidence=ISO;IBA] [GO:0033077
"T cell differentiation in thymus" evidence=IEA;ISO] [GO:0033151
"V(D)J recombination" evidence=ISO;IBA] [GO:0033152 "immunoglobulin
V(D)J recombination" evidence=IEA;ISO] [GO:0033153 "T cell receptor
V(D)J recombination" evidence=IEA;ISO] [GO:0035019 "somatic stem
cell maintenance" evidence=IEA;ISO] [GO:0043524 "negative
regulation of neuron apoptotic process" evidence=IEA;ISO]
[GO:0045190 "isotype switching" evidence=IEA;ISO] [GO:0048146
"positive regulation of fibroblast proliferation" evidence=IEA;ISO]
[GO:0050769 "positive regulation of neurogenesis" evidence=IEA;ISO]
[GO:0051102 "DNA ligation involved in DNA recombination"
evidence=IEA;ISO] [GO:0051103 "DNA ligation involved in DNA repair"
evidence=IEA;ISO] [GO:0051276 "chromosome organization"
evidence=IEA;ISO] [GO:0051402 "neuron apoptotic process"
evidence=IEA;ISO] [GO:0070419 "nonhomologous end joining complex"
evidence=ISO] [GO:0071285 "cellular response to lithium ion"
evidence=IEP] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000977 InterPro:IPR012308 InterPro:IPR012309
InterPro:IPR012310 InterPro:IPR016059 InterPro:IPR021536
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 Pfam:PF11411 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 InterPro:IPR001357 Pfam:PF00533
RGD:1304639 GO:GO:0005886 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0003677 GO:GO:0008283 GO:GO:0001701 GO:GO:0051402
GO:GO:0007417 GO:GO:0043524 GO:GO:0005925 GO:GO:0010332
GO:GO:0050769 GO:GO:0033077 GO:GO:0035019 GO:GO:0045190
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0000793
GO:GO:0048146 EMBL:CH473970 SMART:SM00292 SUPFAM:SSF52113
PROSITE:PS50172 GO:GO:0010165 GO:GO:0051276 GO:GO:0000012
GO:GO:0005958 GO:GO:0006303 GO:GO:0006289 GO:GO:0033153
GO:GO:0071285 GO:GO:0006273 GO:GO:0003910 GO:GO:0051103
Gene3D:1.10.3260.10 SUPFAM:SSF117018 TIGRFAMs:TIGR00574
GO:GO:0006297 KO:K10777 OMA:HMCPSTK GO:GO:0032807 CTD:3981
OrthoDB:EOG4Q58NP GO:GO:0033151 GO:GO:0051102 GO:GO:0033152
GO:GO:0002328 GeneTree:ENSGT00700000104500 IPI:IPI00202196
RefSeq:NP_001099565.1 UniGene:Rn.219326 Ensembl:ENSRNOT00000019615
GeneID:290907 KEGG:rno:290907 UCSC:RGD:1304639 NextBio:631821
Uniprot:D4A0U6
Length = 911
Score = 285 (105.4 bits), Expect = 3.1e-25, Sum P(2) = 3.1e-25
Identities = 99/363 (27%), Positives = 163/363 (44%)
Query: 397 QVFSVLPVYEKIVPALLTDGVWNLSNTCSFTPGIPIGPMLAKPTKGVSEIVNKFQDMEFT 456
++ +V EK+ L V LS+ S T PMLA V + + F
Sbjct: 213 ELHNVTTDLEKVCRQLHDPSV-GLSDI-SITLFSAFRPMLAA-VADVERVEKDMKQQSFY 269
Query: 457 CEYKYDGERAQIHYLEDGSVEIY-SRNAERNTGKFPD------VVLAVSRLKKPSVRSFV 509
E K DGER Q+H +DG++ Y SRN T +F + + + K V+ +
Sbjct: 270 IETKLDGERMQMH--KDGALYRYFSRNGYNYTDQFGESPQEGSLTPFIHNAFKTDVQVCI 327
Query: 510 LDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRV 569
LD E++AY+ Q + + + ++ V SD++ C+ FD+L N + L +E LR
Sbjct: 328 LDGEMMAYNPTTQTFMQ-KGVKFDIKRMVEDSDLQTCYCV--FDVLMVNNKKLGRETLRK 384
Query: 570 RREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSK 629
R + L +F G + + E+ L+ A+D EG+++K + Y+P K
Sbjct: 385 RYDILSSTFTPIQGRIEIVQKTQAQTKQEVVDALNDAIDKREEGIMVK--HPLSIYKPDK 442
Query: 630 RSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDS-----NNEEFQS 684
R WLK+K +Y+ + D LDL+ + + G+G R G+ FL A ++ F +
Sbjct: 443 RGEGWLKIKPEYVTGLMDELDLLIVGGYWGKGSRGGMMSHFLCAVAETPPPGDKPSVFHT 502
Query: 685 ICKIGTGFSEAMLEERSSSLRSKVIP---KPRPYYRFADTISPDVWFEPTERPETSNSPA 741
+C++G+G++ L + L P K P T P+V+ EP A
Sbjct: 503 LCRVGSGYTMKELYDLGLKLAKYWKPFQRKSPPSCILCGTEKPEVYIEPQNSVIVQIKAA 562
Query: 742 SIV 744
IV
Sbjct: 563 EIV 565
Score = 87 (35.7 bits), Expect = 3.1e-25, Sum P(2) = 3.1e-25
Identities = 30/116 (25%), Positives = 58/116 (50%)
Query: 279 EMGDLGLVAKASRSSQSMMRKPDPLTITKVFDTFRLIAKE-AGKDSQEKKKNRIKALLVA 337
+ GD +A + + + LTI KV + L+A +GK KK+ ++ L+
Sbjct: 121 DAGDFATIAYFVLKPRCLQK--GSLTIQKVNELLDLVASNNSGKRKDLVKKSLLQ-LITQ 177
Query: 338 ATDCEPQYLIRLLQSKLRIGLAEQTLLAALGQAAVYNEQHSKPPPNIQSPLEEAAK 393
+ E ++LIR++ L++G+++ T+L+ AV E H N+ + LE+ +
Sbjct: 178 CSALEQKWLIRMIIKDLKLGVSQHTILSIFHNDAV--ELH-----NVTTDLEKVCR 226
>UNIPROTKB|F1MB07 [details] [associations]
symbol:LIG4 "DNA ligase" species:9913 "Bos taurus"
[GO:0051402 "neuron apoptotic process" evidence=IEA] [GO:0051276
"chromosome organization" evidence=IEA] [GO:0051103 "DNA ligation
involved in DNA repair" evidence=IEA] [GO:0051102 "DNA ligation
involved in DNA recombination" evidence=IEA] [GO:0050769 "positive
regulation of neurogenesis" evidence=IEA] [GO:0048146 "positive
regulation of fibroblast proliferation" evidence=IEA] [GO:0045190
"isotype switching" evidence=IEA] [GO:0043524 "negative regulation
of neuron apoptotic process" evidence=IEA] [GO:0035019 "somatic
stem cell maintenance" evidence=IEA] [GO:0033153 "T cell receptor
V(D)J recombination" evidence=IEA] [GO:0033152 "immunoglobulin
V(D)J recombination" evidence=IEA] [GO:0033077 "T cell
differentiation in thymus" evidence=IEA] [GO:0032807 "DNA ligase IV
complex" evidence=IEA] [GO:0010332 "response to gamma radiation"
evidence=IEA] [GO:0010165 "response to X-ray" evidence=IEA]
[GO:0008283 "cell proliferation" evidence=IEA] [GO:0008022 "protein
C-terminus binding" evidence=IEA] [GO:0007417 "central nervous
system development" evidence=IEA] [GO:0006303 "double-strand break
repair via nonhomologous end joining" evidence=IEA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IEA]
[GO:0005958 "DNA-dependent protein kinase-DNA ligase 4 complex"
evidence=IEA] [GO:0005925 "focal adhesion" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0002328 "pro-B cell
differentiation" evidence=IEA] [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0000793 "condensed chromosome"
evidence=IEA] [GO:0000012 "single strand break repair"
evidence=IEA] [GO:0003910 "DNA ligase (ATP) activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] InterPro:IPR000977
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 InterPro:IPR021536 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 Pfam:PF11411 PROSITE:PS00333 PROSITE:PS00697
PROSITE:PS50160 InterPro:IPR001357 Pfam:PF00533 GO:GO:0005886
GO:GO:0005524 GO:GO:0005737 GO:GO:0003677 GO:GO:0008283
GO:GO:0006260 GO:GO:0001701 GO:GO:0051402 GO:GO:0007417
GO:GO:0043524 GO:GO:0005925 GO:GO:0010332 GO:GO:0050769
GO:GO:0033077 GO:GO:0035019 GO:GO:0045190 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0000793 GO:GO:0048146
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0010165
GO:GO:0051276 GO:GO:0000012 GO:GO:0005958 GO:GO:0006303
GO:GO:0033153 GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10
SUPFAM:SSF117018 TIGRFAMs:TIGR00574 GO:GO:0006297 KO:K10777
OMA:HMCPSTK GO:GO:0032807 CTD:3981 GO:GO:0051102 GO:GO:0033152
GO:GO:0002328 GeneTree:ENSGT00700000104500 EMBL:DAAA02034872
IPI:IPI00716207 RefSeq:NP_001178055.1 UniGene:Bt.7959
ProteinModelPortal:F1MB07 PRIDE:F1MB07 Ensembl:ENSBTAT00000021092
GeneID:781252 KEGG:bta:781252 NextBio:20924713 Uniprot:F1MB07
Length = 911
Score = 287 (106.1 bits), Expect = 1.3e-24, Sum P(2) = 1.3e-24
Identities = 108/385 (28%), Positives = 171/385 (44%)
Query: 397 QVFSVLPVYEKIVPALLTDGVWNLSNTCSFTPGIPIGPMLAKPTKGVSEIVNKFQDMEFT 456
++ +V EK+ L V LS+ S T PMLA + I + F
Sbjct: 213 ELHNVTTDLEKVCRQLHDPSV-GLSDI-SITLFSAFKPMLAA-IADIERIEKDMKHQSFY 269
Query: 457 CEYKYDGERAQIHYLEDGSVEIY-SRNAERNTGKF---PD---VVLAVSRLKKPSVRSFV 509
E K DGER Q+H +DG V Y SRN +F P + + K V + +
Sbjct: 270 IETKLDGERMQMH--KDGDVYRYFSRNGYNYVDQFGASPQEGSLTPFIHNAFKTEVLNCI 327
Query: 510 LDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRV 569
LD E++AY+ Q F + + D ++ C FD+L N + L E LR
Sbjct: 328 LDGEMMAYNPNTQT---FMQKGNKFDIKRMVEDSELQTCYCVFDVLMVNDKKLGHETLRK 384
Query: 570 RREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSK 629
R E L F PG + + E+ L+ A+D EG+++K + Y+P K
Sbjct: 385 RYEILNSVFTPVPGRIEIVQKTQAHTKKEVIDALNEAIDKREEGIMVK--HPLSIYKPDK 442
Query: 630 RSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDS--NNEE---FQS 684
R WLK+K +Y+ + D LD++ I + G+G R G+ FL A + + E+ F +
Sbjct: 443 RGEGWLKIKPEYVNGLMDELDILIIGGYWGKGARGGMMSHFLCAVSEKPPSGEKPSVFHT 502
Query: 685 ICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTERPETSNSPA-SI 743
+C++G+G++ L + L K+ +P++R A P TE+PE P S+
Sbjct: 503 LCRVGSGYTMKELYD----LGLKLAKHWKPFHRKAP---PSNILCGTEKPEVYIEPCNSV 555
Query: 744 VYDSQITCLPSSYMPFSRSYFRFGR 768
+ + T + S M + RF R
Sbjct: 556 IVQVKATEIVPSDMYKTGCTLRFPR 580
Score = 79 (32.9 bits), Expect = 1.3e-24, Sum P(2) = 1.3e-24
Identities = 25/115 (21%), Positives = 53/115 (46%)
Query: 279 EMGDLGLVAKASRSSQSMMRKPDPLTITKVFDTFRLIAKEAGKDSQEKKKNRIKALLVAA 338
+ GD ++A + + + L+I +V D IA ++ K + L+ +
Sbjct: 121 DAGDFAMIAYFVLKPRCLQK--GSLSIQQVNDILDSIASNNSAKRKDLMKKSVLQLITQS 178
Query: 339 TDCEPQYLIRLLQSKLRIGLAEQTLLAALGQAAVYNEQHSKPPPNIQSPLEEAAK 393
+ E ++LIR++ L++G ++QT+ + A E H N+ + LE+ +
Sbjct: 179 SALEQKWLIRMIVKDLKLGFSQQTIFSIFHSDAA--ELH-----NVTTDLEKVCR 226
>UNIPROTKB|Q5R6L3 [details] [associations]
symbol:DNL4 "DNA ligase 4" species:9601 "Pongo abelii"
[GO:0070419 "nonhomologous end joining complex" evidence=ISS]
InterPro:IPR000977 InterPro:IPR012308 InterPro:IPR012309
InterPro:IPR012310 InterPro:IPR016059 InterPro:IPR021536
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 Pfam:PF11411 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 InterPro:IPR001357 Pfam:PF00533
GO:GO:0005524 GO:GO:0005634 GO:GO:0051301 GO:GO:0046872
GO:GO:0003677 GO:GO:0006260 GO:GO:0007049 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0003910 GO:GO:0051103
Gene3D:1.10.3260.10 SUPFAM:SSF117018 TIGRFAMs:TIGR00574 KO:K10777
CTD:3981 HOVERGEN:HBG005516 GO:GO:0070419 EMBL:CR860475
RefSeq:NP_001126522.1 UniGene:Pab.18738 ProteinModelPortal:Q5R6L3
SMR:Q5R6L3 PRIDE:Q5R6L3 GeneID:100173511 KEGG:pon:100173511
InParanoid:Q5R6L3 Uniprot:Q5R6L3
Length = 911
Score = 280 (103.6 bits), Expect = 1.8e-24, Sum P(2) = 1.8e-24
Identities = 102/363 (28%), Positives = 161/363 (44%)
Query: 397 QVFSVLPVYEKIVPALLTDGVWNLSNTCSFTPGIPIGPMLAKPTKGVSEIVNKFQDMEFT 456
++ +V EK+ L V LS+ S T PMLA + I + F
Sbjct: 213 ELHNVTTDLEKVCRQLHDPSV-GLSDI-SITLFSAFKPMLAA-IADIEHIEKDMKHQSFY 269
Query: 457 CEYKYDGERAQIHYLEDGSV-EIYSRNAERNTGKF---P---DVVLAVSRLKKPSVRSFV 509
E K DGER Q+H +DG V + +SRN T +F P + + K ++ +
Sbjct: 270 IETKLDGERMQMH--KDGDVYKYFSRNGYNYTDQFGASPTEGSLTPFIHNAFKTDIQICI 327
Query: 510 LDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRV 569
LD E++AY+ Q + T ++ V SD++ C+ FD+L N + L E LR
Sbjct: 328 LDGEMMAYNPNTQTFMQKGT-KFDIKRMVEDSDLQTCYCV--FDVLMVNNKKLGHETLRK 384
Query: 570 RREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSK 629
R E L F PG + + +E+ L+ A+D EG++IK + Y+P K
Sbjct: 385 RYEILSSIFTPIPGRIEIVQKTQAHTKNEVIDALNEAIDKREEGIMIK--QPLSIYKPDK 442
Query: 630 RSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSN--NEE---FQS 684
R WLK+K +Y+ + D LD++ + + G+G R G+ FL A + E+ F +
Sbjct: 443 RGEGWLKIKPEYVSGLMDELDILIVGGYWGKGSRGGMMSHFLCAVAEKPPPGEKPSVFHT 502
Query: 685 ICKIGTGFSEAMLEERSSSLRSKVIP---KPRPYYRFADTISPDVWFEPTERPETSNSPA 741
+ ++G+G + L + L P K P T P+V+ EP A
Sbjct: 503 LSRVGSGCTMKELYDLGLKLAKYWKPFHKKAPPSSILCGTEKPEVYIEPCNSVIVQIKAA 562
Query: 742 SIV 744
IV
Sbjct: 563 EIV 565
Score = 85 (35.0 bits), Expect = 1.8e-24, Sum P(2) = 1.8e-24
Identities = 27/115 (23%), Positives = 55/115 (47%)
Query: 279 EMGDLGLVAKASRSSQSMMRKPDPLTITKVFDTFRLIAKEAGKDSQEKKKNRIKALLVAA 338
+ GD ++A + + + LTI +V D IA ++ K + L+ +
Sbjct: 121 DAGDFAMIAYFVLKPRCLQK--GSLTIQQVNDLLDSIASNNSAKRKDLIKKSLLQLITQS 178
Query: 339 TDCEPQYLIRLLQSKLRIGLAEQTLLAALGQAAVYNEQHSKPPPNIQSPLEEAAK 393
+ E ++LIR++ L++G+++QT+ + AV E H N+ + LE+ +
Sbjct: 179 SALEQKWLIRMIIKDLKLGVSQQTIFSVFHSDAV--ELH-----NVTTDLEKVCR 226
>MGI|MGI:1335098 [details] [associations]
symbol:Lig4 "ligase IV, DNA, ATP-dependent" species:10090
"Mus musculus" [GO:0000012 "single strand break repair"
evidence=ISO] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000793 "condensed chromosome" evidence=ISO] [GO:0001701 "in
utero embryonic development" evidence=IMP] [GO:0002328 "pro-B cell
differentiation" evidence=IMP] [GO:0003677 "DNA binding"
evidence=ISO] [GO:0003909 "DNA ligase activity" evidence=ISO]
[GO:0003910 "DNA ligase (ATP) activity" evidence=ISO;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=ISO;IDA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005694 "chromosome" evidence=IBA] [GO:0005958 "DNA-dependent
protein kinase-DNA ligase 4 complex" evidence=ISO;IDA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0006266 "DNA ligation"
evidence=ISO;IMP;IDA] [GO:0006273 "lagging strand elongation"
evidence=IBA] [GO:0006281 "DNA repair" evidence=IMP] [GO:0006289
"nucleotide-excision repair" evidence=IBA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=ISO]
[GO:0006302 "double-strand break repair" evidence=ISO;IGI;IMP]
[GO:0006303 "double-strand break repair via nonhomologous end
joining" evidence=ISO;IMP] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA] [GO:0007417
"central nervous system development" evidence=IGI;IMP] [GO:0008022
"protein C-terminus binding" evidence=ISO] [GO:0008283 "cell
proliferation" evidence=IMP] [GO:0010165 "response to X-ray"
evidence=ISO] [GO:0010212 "response to ionizing radiation"
evidence=IMP] [GO:0010332 "response to gamma radiation"
evidence=IMP] [GO:0016874 "ligase activity" evidence=ISO]
[GO:0032807 "DNA ligase IV complex" evidence=ISO;IBA] [GO:0033077
"T cell differentiation in thymus" evidence=IMP] [GO:0033151 "V(D)J
recombination" evidence=ISO;IMP;IDA] [GO:0033152 "immunoglobulin
V(D)J recombination" evidence=IMP] [GO:0033153 "T cell receptor
V(D)J recombination" evidence=IMP] [GO:0035019 "somatic stem cell
maintenance" evidence=IMP] [GO:0043524 "negative regulation of
neuron apoptotic process" evidence=IGI;IMP] [GO:0045190 "isotype
switching" evidence=IMP] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0048146 "positive regulation of fibroblast
proliferation" evidence=IMP] [GO:0050769 "positive regulation of
neurogenesis" evidence=IMP] [GO:0051102 "DNA ligation involved in
DNA recombination" evidence=IMP] [GO:0051103 "DNA ligation involved
in DNA repair" evidence=ISO;IMP] [GO:0051276 "chromosome
organization" evidence=IGI] [GO:0051301 "cell division"
evidence=IEA] [GO:0051402 "neuron apoptotic process" evidence=IGI]
[GO:0070419 "nonhomologous end joining complex" evidence=ISO]
InterPro:IPR000977 InterPro:IPR012308 InterPro:IPR012309
InterPro:IPR012310 InterPro:IPR016059 InterPro:IPR021536
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 Pfam:PF11411 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 InterPro:IPR001357 MGI:MGI:1335098
Pfam:PF00533 GO:GO:0005524 GO:GO:0005694 GO:GO:0051301
GO:GO:0046872 GO:GO:0003677 GO:GO:0008283 GO:GO:0001701
GO:GO:0051402 GO:GO:0007417 GO:GO:0043524 GO:GO:0010332
GO:GO:0007049 GO:GO:0050769 GO:GO:0033077 GO:GO:0035019
GO:GO:0045190 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0048146 EMBL:CH466566 SMART:SM00292 SUPFAM:SSF52113
PROSITE:PS50172 GO:GO:0051276 GO:GO:0005958 GO:GO:0006303
GO:GO:0006289 GO:GO:0033153 GO:GO:0006273 eggNOG:COG1793
GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 KO:K10777 OMA:HMCPSTK GO:GO:0032807 CTD:3981
HOGENOM:HOG000007831 HOVERGEN:HBG005516 OrthoDB:EOG4Q58NP
GO:GO:0051102 GO:GO:0033152 GO:GO:0002328 EMBL:AK030029
EMBL:AK148081 EMBL:AC138397 IPI:IPI00225019 RefSeq:NP_795927.2
UniGene:Mm.80584 ProteinModelPortal:Q8BTF7 STRING:Q8BTF7
PhosphoSite:Q8BTF7 PRIDE:Q8BTF7 Ensembl:ENSMUST00000095476
Ensembl:ENSMUST00000170033 GeneID:319583 KEGG:mmu:319583
UCSC:uc009kul.1 GeneTree:ENSGT00700000104500 InParanoid:Q8BTF7
NextBio:395028 CleanEx:MM_LIG4 Genevestigator:Q8BTF7
GermOnline:ENSMUSG00000049717 Uniprot:Q8BTF7
Length = 911
Score = 271 (100.5 bits), Expect = 5.2e-24, Sum P(2) = 5.2e-24
Identities = 97/363 (26%), Positives = 160/363 (44%)
Query: 397 QVFSVLPVYEKIVPALLTDGVWNLSNTCSFTPGIPIGPMLAKPTKGVSEIVNKFQDMEFT 456
++ +V EK+ L V LS+ S T PMLA V + + F
Sbjct: 213 ELHNVTTDLEKVCRQLHDPSV-GLSDI-SITLFSAFKPMLAA-VADVERVEKDMKQQSFY 269
Query: 457 CEYKYDGERAQIHYLEDGSVEIY-SRNAERNTGKFPD------VVLAVSRLKKPSVRSFV 509
E K DGER Q+H +DG++ Y SRN T +F + + + V++ +
Sbjct: 270 IETKLDGERMQMH--KDGALYRYFSRNGYNYTDQFGESPQEGSLTPFIHNAFGTDVQACI 327
Query: 510 LDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRV 569
LD E++AY+ Q + + + ++ V D + C FD+L N + L +E LR
Sbjct: 328 LDGEMMAYNPTTQTFMQ-KGVKFDIKRMVE--DSGLQTCYSVFDVLMVNKKKLGRETLRK 384
Query: 570 RREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSK 629
R E L +F G + + E+ L+ A+D EG+++K + Y+P K
Sbjct: 385 RYEILSSTFTPIQGRIEIVQKTQAHTKKEVVDALNDAIDKREEGIMVK--HPLSIYKPDK 442
Query: 630 RSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDS-----NNEEFQS 684
R WLK+K +Y+ + D LD++ + + G+G R G+ FL A ++ F +
Sbjct: 443 RGEGWLKIKPEYVSGLMDELDVLIVGGYWGKGSRGGMMSHFLCAVAETPPPGDRPSVFHT 502
Query: 685 ICKIGTGFSEAMLEERSSSLRSKVIP---KPRPYYRFADTISPDVWFEPTERPETSNSPA 741
+C++G+G++ L + L P K P T P+V+ EP A
Sbjct: 503 LCRVGSGYTMKELYDLGLKLAKYWKPFHKKSPPSSILCGTEKPEVYIEPQNSVIVQIKAA 562
Query: 742 SIV 744
IV
Sbjct: 563 EIV 565
Score = 90 (36.7 bits), Expect = 5.2e-24, Sum P(2) = 5.2e-24
Identities = 29/116 (25%), Positives = 60/116 (51%)
Query: 279 EMGDLGLVAKASRSSQSMMRKPDPLTITKVFDTFRLIAKE-AGKDSQEKKKNRIKALLVA 337
+ GD ++A + + + LTI +V + L+A +GK KK+ ++ L+
Sbjct: 121 DAGDFAMIAYFVLKPRCLQK--GSLTIQQVNELLDLVASNNSGKKKDLVKKSLLQ-LITQ 177
Query: 338 ATDCEPQYLIRLLQSKLRIGLAEQTLLAALGQAAVYNEQHSKPPPNIQSPLEEAAK 393
++ E ++LIR++ L++G+++QT+ + AV E H N+ + LE+ +
Sbjct: 178 SSALEQKWLIRMIIKDLKLGISQQTIFSIFHNDAV--ELH-----NVTTDLEKVCR 226
>UNIPROTKB|F1RLP1 [details] [associations]
symbol:LIG4 "DNA ligase" species:9823 "Sus scrofa"
[GO:0051402 "neuron apoptotic process" evidence=IEA] [GO:0051276
"chromosome organization" evidence=IEA] [GO:0051103 "DNA ligation
involved in DNA repair" evidence=IEA] [GO:0051102 "DNA ligation
involved in DNA recombination" evidence=IEA] [GO:0050769 "positive
regulation of neurogenesis" evidence=IEA] [GO:0048146 "positive
regulation of fibroblast proliferation" evidence=IEA] [GO:0045190
"isotype switching" evidence=IEA] [GO:0043524 "negative regulation
of neuron apoptotic process" evidence=IEA] [GO:0035019 "somatic
stem cell maintenance" evidence=IEA] [GO:0033153 "T cell receptor
V(D)J recombination" evidence=IEA] [GO:0033152 "immunoglobulin
V(D)J recombination" evidence=IEA] [GO:0033077 "T cell
differentiation in thymus" evidence=IEA] [GO:0032807 "DNA ligase IV
complex" evidence=IEA] [GO:0010332 "response to gamma radiation"
evidence=IEA] [GO:0010165 "response to X-ray" evidence=IEA]
[GO:0008283 "cell proliferation" evidence=IEA] [GO:0008022 "protein
C-terminus binding" evidence=IEA] [GO:0007417 "central nervous
system development" evidence=IEA] [GO:0006303 "double-strand break
repair via nonhomologous end joining" evidence=IEA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IEA]
[GO:0005958 "DNA-dependent protein kinase-DNA ligase 4 complex"
evidence=IEA] [GO:0005925 "focal adhesion" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0002328 "pro-B cell
differentiation" evidence=IEA] [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0000793 "condensed chromosome"
evidence=IEA] [GO:0000012 "single strand break repair"
evidence=IEA] [GO:0003910 "DNA ligase (ATP) activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] InterPro:IPR000977
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 InterPro:IPR021536 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 Pfam:PF11411 PROSITE:PS00333 PROSITE:PS00697
PROSITE:PS50160 InterPro:IPR001357 Pfam:PF00533 GO:GO:0005886
GO:GO:0005524 GO:GO:0005737 GO:GO:0003677 GO:GO:0008283
GO:GO:0006260 GO:GO:0001701 GO:GO:0051402 GO:GO:0007417
GO:GO:0043524 GO:GO:0005925 GO:GO:0010332 GO:GO:0050769
GO:GO:0033077 GO:GO:0035019 GO:GO:0045190 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0000793 GO:GO:0048146
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0010165
GO:GO:0051276 GO:GO:0000012 GO:GO:0005958 GO:GO:0006303
GO:GO:0033153 GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10
SUPFAM:SSF117018 TIGRFAMs:TIGR00574 GO:GO:0006297 KO:K10777
OMA:HMCPSTK GO:GO:0032807 GO:GO:0051102 GO:GO:0033152 GO:GO:0002328
GeneTree:ENSGT00700000104500 EMBL:CU019584 RefSeq:XP_003131137.2
ProteinModelPortal:F1RLP1 Ensembl:ENSSSCT00000010458
GeneID:100155891 KEGG:ssc:100155891 Uniprot:F1RLP1
Length = 910
Score = 279 (103.3 bits), Expect = 5.9e-24, Sum P(2) = 5.9e-24
Identities = 101/363 (27%), Positives = 163/363 (44%)
Query: 397 QVFSVLPVYEKIVPALLTDGVWNLSNTCSFTPGIPIGPMLAKPTKGVSEIVNKFQDMEFT 456
++ +V EK+ L V LS+ S T PMLA + I + F
Sbjct: 213 ELHNVTTDLEKVCRQLHDPSV-GLSDI-SITLFSAFKPMLAA-IADIERIEKDMKHQSFY 269
Query: 457 CEYKYDGERAQIHYLEDGSV-EIYSRNAERNTGKF---PD---VVLAVSRLKKPSVRSFV 509
E K DGER Q+H +DG V + +SRN +F P + + K +V++ +
Sbjct: 270 IETKLDGERMQMH--KDGDVYQYFSRNGYNYGDQFGVSPQEGSLTPFIHGTFKTNVQNCI 327
Query: 510 LDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRV 569
LD E++AY+ Q + + ++ V SD++ C+ FD+L N + L E L+
Sbjct: 328 LDGEMMAYNPNTQTFMQ-KGNKFDIKRMVEDSDLQTCYCV--FDVLMVNSKKLGHETLKN 384
Query: 570 RREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSK 629
R E L F PG + + E+ L+ A+D EG++IK + Y+P K
Sbjct: 385 RYEILSSVFTPIPGRIEIVPKTQAHTKKEVIDALNEAIDKREEGIMIKYPL--SIYKPDK 442
Query: 630 RSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSN--NEE---FQS 684
R WLK+K +Y+ + D LD++ + + G+G R G+ FL A + E+ F +
Sbjct: 443 RGEGWLKIKPEYVNGLMDELDILIVGGYWGKGARGGMMSHFLCAVAEKPPAGEKPSVFHT 502
Query: 685 ICKIGTGFSEAMLEERSSSLRSKVIP---KPRPYYRFADTISPDVWFEPTERPETSNSPA 741
+C++G+G++ L + L P K P T P+V+ EP A
Sbjct: 503 LCRVGSGYTMKELYDLGLKLAKHWKPFHRKAPPGSILCGTEKPEVYIEPCNSVIVQVKAA 562
Query: 742 SIV 744
IV
Sbjct: 563 EIV 565
Score = 81 (33.6 bits), Expect = 5.9e-24, Sum P(2) = 5.9e-24
Identities = 26/115 (22%), Positives = 53/115 (46%)
Query: 279 EMGDLGLVAKASRSSQSMMRKPDPLTITKVFDTFRLIAKEAGKDSQEKKKNRIKALLVAA 338
+ GD ++A + + + LTI +V D IA ++ K + L+ +
Sbjct: 121 DAGDFAIIAYFVLKPRCLQK--GSLTIQQVNDLLDSIASNNSAKRKDLVKKSLLQLITQS 178
Query: 339 TDCEPQYLIRLLQSKLRIGLAEQTLLAALGQAAVYNEQHSKPPPNIQSPLEEAAK 393
+ E ++LIR++ L++G ++QT+ + A E H N+ + LE+ +
Sbjct: 179 SALEQKWLIRMILKDLKLGFSQQTIFSLFHDDAA--ELH-----NVTTDLEKVCR 226
>UNIPROTKB|P49917 [details] [associations]
symbol:LIG4 "DNA ligase 4" species:9606 "Homo sapiens"
[GO:0007049 "cell cycle" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0051301 "cell division" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0033152 "immunoglobulin
V(D)J recombination" evidence=IEA] [GO:0071285 "cellular response
to lithium ion" evidence=IEA] [GO:0006273 "lagging strand
elongation" evidence=IBA] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0016874 "ligase
activity" evidence=IDA] [GO:0006297 "nucleotide-excision repair,
DNA gap filling" evidence=IDA] [GO:0000012 "single strand break
repair" evidence=IDA] [GO:0003910 "DNA ligase (ATP) activity"
evidence=IDA] [GO:0006266 "DNA ligation" evidence=IDA] [GO:0006303
"double-strand break repair via nonhomologous end joining"
evidence=IMP;IDA;TAS] [GO:0033151 "V(D)J recombination"
evidence=IDA] [GO:0032807 "DNA ligase IV complex" evidence=IMP]
[GO:0002328 "pro-B cell differentiation" evidence=ISS] [GO:0005958
"DNA-dependent protein kinase-DNA ligase 4 complex"
evidence=ISS;IDA] [GO:0006302 "double-strand break repair"
evidence=ISS;IDA;TAS] [GO:0007417 "central nervous system
development" evidence=ISS] [GO:0008283 "cell proliferation"
evidence=ISS] [GO:0010332 "response to gamma radiation"
evidence=ISS] [GO:0033153 "T cell receptor V(D)J recombination"
evidence=ISS] [GO:0035019 "somatic stem cell maintenance"
evidence=ISS] [GO:0043524 "negative regulation of neuron apoptotic
process" evidence=ISS] [GO:0045190 "isotype switching"
evidence=ISS] [GO:0050769 "positive regulation of neurogenesis"
evidence=ISS] [GO:0051102 "DNA ligation involved in DNA
recombination" evidence=ISS] [GO:0051103 "DNA ligation involved in
DNA repair" evidence=ISS;IDA] [GO:0051276 "chromosome organization"
evidence=ISS] [GO:0001701 "in utero embryonic development"
evidence=ISS] [GO:0033077 "T cell differentiation in thymus"
evidence=ISS] [GO:0048146 "positive regulation of fibroblast
proliferation" evidence=ISS] [GO:0051402 "neuron apoptotic process"
evidence=ISS] [GO:0000793 "condensed chromosome" evidence=IDA]
[GO:0003909 "DNA ligase activity" evidence=IDA;TAS] [GO:0008022
"protein C-terminus binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0010165 "response to X-ray" evidence=IMP]
[GO:0070419 "nonhomologous end joining complex" evidence=IDA]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006281 "DNA repair"
evidence=TAS] [GO:0016032 "viral reproduction" evidence=TAS]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
[GO:0005925 "focal adhesion" evidence=IDA] Reactome:REACT_216
InterPro:IPR000977 InterPro:IPR012308 InterPro:IPR012309
InterPro:IPR012310 InterPro:IPR016059 InterPro:IPR021536
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 Pfam:PF11411 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 InterPro:IPR001357 Pfam:PF00533
GO:GO:0005886 GO:GO:0005524 GO:GO:0005737 Reactome:REACT_116125
GO:GO:0005654 GO:GO:0016032 GO:GO:0051301 GO:GO:0046872
GO:GO:0003677 GO:GO:0008283 GO:GO:0001701 GO:GO:0051402
GO:GO:0007417 GO:GO:0043524 GO:GO:0005925 GO:GO:0010332
EMBL:AL157762 GO:GO:0007049 GO:GO:0050769 GO:GO:0033077
GO:GO:0035019 GO:GO:0045190 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0000793 GO:GO:0048146 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0010165 GO:GO:0051276
GO:GO:0000012 GO:GO:0005958 GO:GO:0006303 GO:GO:0033153
GO:GO:0071285 PDB:4HTP PDBsum:4HTP MIM:602450 Orphanet:39041
GO:GO:0006273 eggNOG:COG1793 GO:GO:0003910 GO:GO:0051103
Gene3D:1.10.3260.10 SUPFAM:SSF117018 TIGRFAMs:TIGR00574
GO:GO:0006297 BRENDA:6.5.1.1 KO:K10777 OMA:HMCPSTK GO:GO:0032807
CTD:3981 HOGENOM:HOG000007831 HOVERGEN:HBG005516 OrthoDB:EOG4Q58NP
EMBL:X83441 EMBL:AF479264 EMBL:BC037491 IPI:IPI00217669 PIR:I37079
RefSeq:NP_001091738.1 RefSeq:NP_002303.2 RefSeq:NP_996820.1
UniGene:Hs.166091 PDB:1IK9 PDB:2E2W PDB:3II6 PDB:3VNN PDB:4HTO
PDBsum:1IK9 PDBsum:2E2W PDBsum:3II6 PDBsum:3VNN PDBsum:4HTO
ProteinModelPortal:P49917 SMR:P49917 DIP:DIP-37958N IntAct:P49917
MINT:MINT-3018022 STRING:P49917 PhosphoSite:P49917 DMDM:88911290
PaxDb:P49917 PRIDE:P49917 DNASU:3981 Ensembl:ENST00000356922
Ensembl:ENST00000405925 Ensembl:ENST00000442234 GeneID:3981
KEGG:hsa:3981 UCSC:uc001vqn.3 GeneCards:GC13M108859 HGNC:HGNC:6601
HPA:HPA001334 MIM:601837 MIM:606593 neXtProt:NX_P49917
Orphanet:99812 PharmGKB:PA30375 InParanoid:P49917 PhylomeDB:P49917
ChiTaRS:LIG4 EvolutionaryTrace:P49917 GenomeRNAi:3981 NextBio:15604
Bgee:P49917 CleanEx:HS_LIG4 Genevestigator:P49917
GermOnline:ENSG00000174405 GO:GO:0051102 GO:GO:0033152
GO:GO:0002328 Uniprot:P49917
Length = 911
Score = 279 (103.3 bits), Expect = 5.9e-24, Sum P(2) = 5.9e-24
Identities = 101/363 (27%), Positives = 161/363 (44%)
Query: 397 QVFSVLPVYEKIVPALLTDGVWNLSNTCSFTPGIPIGPMLAKPTKGVSEIVNKFQDMEFT 456
++ +V EK+ L V LS+ S T PMLA + I + F
Sbjct: 213 ELHNVTTDLEKVCRQLHDPSV-GLSDI-SITLFSAFKPMLAA-IADIEHIEKDMKHQSFY 269
Query: 457 CEYKYDGERAQIHYLEDGSV-EIYSRNAERNTGKF---P---DVVLAVSRLKKPSVRSFV 509
E K DGER Q+H +DG V + +SRN T +F P + + K ++ +
Sbjct: 270 IETKLDGERMQMH--KDGDVYKYFSRNGYNYTDQFGASPTEGSLTPFIHNAFKADIQICI 327
Query: 510 LDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRV 569
LD E++AY+ Q + T ++ V SD++ C+ FD+L N + L E LR
Sbjct: 328 LDGEMMAYNPNTQTFMQKGT-KFDIKRMVEDSDLQTCYCV--FDVLMVNNKKLGHETLRK 384
Query: 570 RREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSK 629
R E L F PG + + +E+ L+ A+D EG+++K + Y+P K
Sbjct: 385 RYEILSSIFTPIPGRIEIVQKTQAHTKNEVIDALNEAIDKREEGIMVK--QPLSIYKPDK 442
Query: 630 RSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSN--NEE---FQS 684
R WLK+K +Y+ + D LD++ + + G+G R G+ FL A + E+ F +
Sbjct: 443 RGEGWLKIKPEYVSGLMDELDILIVGGYWGKGSRGGMMSHFLCAVAEKPPPGEKPSVFHT 502
Query: 685 ICKIGTGFSEAMLEERSSSLRSKVIP---KPRPYYRFADTISPDVWFEPTERPETSNSPA 741
+ ++G+G + L + L P K P T P+V+ EP A
Sbjct: 503 LSRVGSGCTMKELYDLGLKLAKYWKPFHRKAPPSSILCGTEKPEVYIEPCNSVIVQIKAA 562
Query: 742 SIV 744
IV
Sbjct: 563 EIV 565
Score = 81 (33.6 bits), Expect = 5.9e-24, Sum P(2) = 5.9e-24
Identities = 26/115 (22%), Positives = 54/115 (46%)
Query: 279 EMGDLGLVAKASRSSQSMMRKPDPLTITKVFDTFRLIAKEAGKDSQEKKKNRIKALLVAA 338
+ GD ++A + + + LTI +V D IA ++ K + L+ +
Sbjct: 121 DAGDFAMIAYFVLKPRCLQK--GSLTIQQVNDLLDSIASNNSAKRKDLIKKSLLQLITQS 178
Query: 339 TDCEPQYLIRLLQSKLRIGLAEQTLLAALGQAAVYNEQHSKPPPNIQSPLEEAAK 393
+ E ++LIR++ L++G+++QT+ + A E H N+ + LE+ +
Sbjct: 179 SALEQKWLIRMIIKDLKLGVSQQTIFSVFHNDAA--ELH-----NVTTDLEKVCR 226
>UNIPROTKB|P95096 [details] [associations]
symbol:lig "Probable DNA ligase" species:1773
"Mycobacterium tuberculosis" [GO:0000287 "magnesium ion binding"
evidence=IDA] [GO:0003910 "DNA ligase (ATP) activity" evidence=IDA]
[GO:0005618 "cell wall" evidence=IDA] [GO:0006266 "DNA ligation"
evidence=IDA] HAMAP:MF_00407 InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
InterPro:IPR022865 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679
PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005524
GO:GO:0005618 GO:GO:0051301 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0000287 GO:GO:0003677 GO:GO:0006260
GO:GO:0007049 GO:GO:0006310 EMBL:BX842581 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 eggNOG:COG1793 GO:GO:0003910
GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 HSSP:P18858 OMA:ARVQVHK HOGENOM:HOG000036008
PIR:G70649 RefSeq:NP_217578.1 RefSeq:NP_337667.1
RefSeq:YP_006516523.1 ProteinModelPortal:P95096 SMR:P95096
PRIDE:P95096 EnsemblBacteria:EBMYCT00000001759
EnsemblBacteria:EBMYCT00000071799 GeneID:13317866 GeneID:887553
GeneID:923636 KEGG:mtc:MT3148 KEGG:mtu:Rv3062 KEGG:mtv:RVBD_3062
PATRIC:18128680 TubercuList:Rv3062 KO:K01971 ProtClustDB:PRK03180
Uniprot:P95096
Length = 507
Score = 250 (93.1 bits), Expect = 8.4e-24, Sum P(2) = 8.4e-24
Identities = 89/281 (31%), Positives = 132/281 (46%)
Query: 422 NTCSFTPGIPIGPMLAKPTKGVSEIVNKFQDMEFTCEYKYDGERAQIHYLEDGSVEIYSR 481
+T + G PIGPMLA+ V + + + E K DG R QIH D V IY+R
Sbjct: 174 DTFTLRVGRPIGPMLAQTATSVHDALERHGGTTIF-EAKLDGARVQIHRAND-QVRIYTR 231
Query: 482 NAERNTGKFPDVVLAVSRLKKPSVRSFVLDCEIVAY--DREKQKILPFQTLSTRARKNVS 539
+ + T + P+VV A L P VR V D E +A D Q+ FQ ++R ++V
Sbjct: 232 SLDDVTARLPEVVEATLAL--P-VRDLVADGEAIALCPDNRPQR---FQVTASRFGRSVD 285
Query: 540 LSDIKVD--VCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLD 597
++ + + ++ FDIL+R+G LL+ R L D+ P + +TS D
Sbjct: 286 VAAARATQPLSVFFFDILHRDGTDLLEAPTTERLAAL-DALV--PARHRVDRLITS-DPT 341
Query: 598 EIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAF 657
+ FLDA + A EG++ K A Y +R WLK+K + +LDLV +A
Sbjct: 342 DAANFLDATLAAGHEGVMAKAPA--ARYLAGRRGAGWLKVKPVH------TLDLVVLAVE 393
Query: 658 HGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLE 698
G G+R G L D F + K G ++AML+
Sbjct: 394 WGSGRRRGKLSNIHLGARDPATGGFVMVGKTFKGMTDAMLD 434
Score = 100 (40.3 bits), Expect = 8.4e-24, Sum P(2) = 8.4e-24
Identities = 28/73 (38%), Positives = 38/73 (52%)
Query: 300 PDP-LTITKVFDTFRLIAKEAGKDSQEKKKNRIKALLVAATDCEPQYLIRLLQSKLRIGL 358
P P LT+T V T I GK SQ ++ + L AAT+ E +L+RLL +LR G
Sbjct: 71 PQPALTVTGVDATLSKIGTLPGKGSQAQRAALVAELFSAATEAEQTFLLRLLGGELRQGA 130
Query: 359 AEQTLLAALGQAA 371
+ A+ QAA
Sbjct: 131 KGGIMADAVAQAA 143
Score = 41 (19.5 bits), Expect = 1.2e-17, Sum P(2) = 1.2e-17
Identities = 13/48 (27%), Positives = 21/48 (43%)
Query: 249 LELGIGDASIIKALAEACGRTESHVKKQYQEMGDLGLVAKASRSSQSM 296
L G + A+A+A G + V++ GDL A A S ++
Sbjct: 126 LRQGAKGGIMADAVAQAAGLPAATVQRAAMLGGDLAAAAAAGLSGAAL 173
>UNIPROTKB|Q9FCB1 [details] [associations]
symbol:lig "Probable DNA ligase" species:100226
"Streptomyces coelicolor A3(2)" [GO:0003910 "DNA ligase (ATP)
activity" evidence=IBA] [GO:0005694 "chromosome" evidence=IBA]
[GO:0006266 "DNA ligation" evidence=IBA] [GO:0006273 "lagging
strand elongation" evidence=IBA] [GO:0006289 "nucleotide-excision
repair" evidence=IBA] HAMAP:MF_00407 InterPro:IPR000977
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 InterPro:IPR022865 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160
GO:GO:0005524 GO:GO:0005694 GO:GO:0051301 GO:GO:0046872
GO:GO:0003677 GO:GO:0007049 GO:GO:0006310 GenomeReviews:AL645882_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006289
GO:GO:0006273 eggNOG:COG1793 GO:GO:0003910 GO:GO:0051103
Gene3D:1.10.3260.10 SUPFAM:SSF117018 TIGRFAMs:TIGR00574 OMA:ARVQVHK
HOGENOM:HOG000036008 KO:K01971 ProtClustDB:PRK03180 EMBL:AL939108
RefSeq:NP_625491.1 ProteinModelPortal:Q9FCB1 GeneID:1096625
KEGG:sco:SCO1202 PATRIC:23731956 Uniprot:Q9FCB1
Length = 512
Score = 255 (94.8 bits), Expect = 5.2e-21, Sum P(2) = 5.2e-21
Identities = 96/328 (29%), Positives = 151/328 (46%)
Query: 406 EKIVPALLTDGVWNLSNTCSFTPGIPIGPMLAKPTKGVSEIVNKFQDMEFTCEYKYDGER 465
+ + ALL DG L T G P+ PMLA V+E V K E K DG R
Sbjct: 159 QTVAEALLADGPGALDRF-RLTVGQPVLPMLAHSASSVAEAVGKLGAA--AVEEKLDGIR 215
Query: 466 AQIHYLEDGSVEIYSRNAERNTGKFPDVVLAVSRLKKPSVRSFVLDCEIVAYDREKQKIL 525
Q+H + G+V IY+R + T + P+V A L P R F+LD E ++ D + +
Sbjct: 216 VQVHR-DGGTVRIYTRTLDDITDRLPEVTEAALAL--PGER-FILDGEAISLDADGRP-R 270
Query: 526 PFQTLSTR--ARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPG 583
FQ + R +R +V+ + V V FD+L +G+ LL L R L EP
Sbjct: 271 SFQETAGRVGSRTDVATAARAVPVSAVFFDVLSVDGRDLLDLPLTERHAELA-RLVPEP- 328
Query: 584 FFQFATTLTS--IDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDY 641
+ TL D ++FL + EG+++K +D A Y +R +WLK+K +
Sbjct: 329 -LRVRRTLVHGPEDTGAAEEFLARTLARGHEGVVVKGLD--AAYSAGRRGASWLKVKPVH 385
Query: 642 IESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERS 701
+LDLV +AA G G+RTG L ++ F + K G ++A+L ++
Sbjct: 386 ------TLDLVVLAAEWGHGRRTGKLSNLHLGARTADGS-FAMLGKTFKGMTDALLTWQT 438
Query: 702 SSLRSKVIPKPRPYYRFADTISPDVWFE 729
L+ + + + + T+ P++ E
Sbjct: 439 ERLKELAVEE----HGWGVTVRPELVVE 462
Score = 68 (29.0 bits), Expect = 5.2e-21, Sum P(2) = 5.2e-21
Identities = 19/68 (27%), Positives = 33/68 (48%)
Query: 303 LTITKVFDTFRLIAKEAGKDSQEKKKNRIKALLVAATDCEPQYLIRLLQSKLRIGLAEQT 362
LT+ V + +G SQ ++ + L+ AAT+ E ++LI LL ++R G +
Sbjct: 73 LTVRDVDARLTRLGAVSGAGSQAERTRLVGELMGAATEDEQRFLIGLLTGEVRQGALDAA 132
Query: 363 LLAALGQA 370
+ L A
Sbjct: 133 AVEGLAAA 140
Score = 43 (20.2 bits), Expect = 2.1e-18, Sum P(2) = 2.1e-18
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 252 GIGDASIIKALAEACGRTESHVKKQYQEMGDLGLVAKA 289
G DA+ ++ LA A + V++ G L VA+A
Sbjct: 127 GALDAAAVEGLAAATDAPPADVRRAVMLAGSLQTVAEA 164
>SGD|S000005531 [details] [associations]
symbol:DNL4 "DNA ligase required for nonhomologous
end-joining (NHEJ)" species:4932 "Saccharomyces cerevisiae"
[GO:0006303 "double-strand break repair via nonhomologous end
joining" evidence=IMP;IDA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0001302 "replicative cell aging" evidence=IGI]
[GO:0032807 "DNA ligase IV complex" evidence=IPI] [GO:0005634
"nucleus" evidence=IEA] [GO:0000790 "nuclear chromatin"
evidence=IPI] [GO:0003910 "DNA ligase (ATP) activity"
evidence=IEA;IMP;IDA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0007049 "cell cycle" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0051103 "DNA ligation involved
in DNA repair" evidence=IEA] [GO:0003909 "DNA ligase activity"
evidence=IEA] [GO:0006266 "DNA ligation" evidence=IBA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0051301 "cell division" evidence=IEA] [GO:0016874
"ligase activity" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012310 InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675
PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160 InterPro:IPR001357
SGD:S000005531 Pfam:PF00533 GO:GO:0005524 EMBL:BK006948
GO:GO:0051301 GO:GO:0046872 GO:GO:0003677 GO:GO:0006260
GO:GO:0001302 GO:GO:0007049 GO:GO:0006310 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 EMBL:U43491 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0006303 eggNOG:COG1793
GO:GO:0003910 GO:GO:0051103 TIGRFAMs:TIGR00574 BRENDA:6.5.1.1
KO:K10777 GO:GO:0032807 HOGENOM:HOG000093622 OMA:CSIANGI
OrthoDB:EOG41K2MD GeneTree:ENSGT00700000104500 EMBL:Z74913
PIR:S66870 RefSeq:NP_014647.1 PDB:1Z56 PDBsum:1Z56
ProteinModelPortal:Q08387 SMR:Q08387 DIP:DIP-5801N IntAct:Q08387
MINT:MINT-672762 STRING:Q08387 EnsemblFungi:YOR005C GeneID:854166
KEGG:sce:YOR005C CYGD:YOR005c EvolutionaryTrace:Q08387
NextBio:975950 Genevestigator:Q08387 GermOnline:YOR005C
Uniprot:Q08387
Length = 944
Score = 283 (104.7 bits), Expect = 8.6e-21, Sum P(2) = 8.6e-21
Identities = 84/287 (29%), Positives = 145/287 (50%)
Query: 407 KIVPALLTDGVWNLSNT-CSFTPGIPIGPMLAKPTK-GVSEIVNKFQDMEFTCEYKYDGE 464
K+V + L D L + S G P LAK +I D +F E K DGE
Sbjct: 228 KVVTSKLYDPKVRLKDDDLSIKVGFAFAPQLAKKVNLSYEKICRTLHD-DFLVEEKMDGE 286
Query: 465 RAQIHYLEDG-SVEIYSRNAERNTGKFPDVVLA--VSR-LK-KPSVRSFVLDCEIVAYDR 519
R Q+HY+ G S++ +SR T + + + +S+ L+ SV+ VLD E+V +D
Sbjct: 287 RIQVHYMNYGESIKFFSRRGIDYTYLYGASLSSGTISQHLRFTDSVKECVLDGEMVTFDA 346
Query: 520 EKQKILPFQTLSTRARKNVSLSDIK-VDVC-IY-AFDILYRNGQPLLQEQLRVRREHLYD 576
+++ ILPF + A++ +S + I VD +Y FD+LY NG L L R+++L
Sbjct: 347 KRRVILPFGLVKGSAKEALSFNSINNVDFHPLYMVFDLLYLNGTSLTPLPLHQRKQYLNS 406
Query: 577 SFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLK 636
+ + ++ I+K L+ A+ EG+++K + ++Y + R+ NW+K
Sbjct: 407 ILSPLKNIVEIVRSSRCYGVESIKKSLEVAISLGSEGVVLKYYN--SSYNVASRNNNWIK 464
Query: 637 LKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQ 683
+K +Y+E G++LDL+ I G+ +G +F+L + EE++
Sbjct: 465 VKPEYLEEFGENLDLIVI------GRDSGKKDSFMLGLLVLDEEEYK 505
Score = 47 (21.6 bits), Expect = 8.6e-21, Sum P(2) = 8.6e-21
Identities = 25/106 (23%), Positives = 49/106 (46%)
Query: 101 NSVVGEKIQEVAEEPSNDLVK--PISNQIDNPIDSEKESQPTPPSPKKRKVNVNSVSAKE 158
+S++ E+I + EPS+ + +++ +D+ S S K K ++ V
Sbjct: 126 SSLLVEEIAKRRAEPSSKAITIDNVNHYLDSLSGDRFASGRGFKSLVKSKPFLHCVE-NM 184
Query: 159 KIAELKS--NIVLLKKKAGEFDPKMVACWEKGERVPFIFLSLVFDM 202
ELK +IVL + G + K++ CW + +LS++ D+
Sbjct: 185 SFVELKYFFDIVLKNRVIGGQEHKLLNCWHPDAQD---YLSVISDL 227
>DICTYBASE|DDB_G0292760 [details] [associations]
symbol:lig4 "BRCT domain-containing protein"
species:44689 "Dictyostelium discoideum" [GO:0005958 "DNA-dependent
protein kinase-DNA ligase 4 complex" evidence=ISS] [GO:0005634
"nucleus" evidence=IEA;ISS] [GO:0003910 "DNA ligase (ATP) activity"
evidence=IEA;ISS;IBA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0000012 "single strand break repair" evidence=ISS] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0032807 "DNA ligase IV
complex" evidence=IBA] [GO:0006303 "double-strand break repair via
nonhomologous end joining" evidence=IBA] [GO:0006289
"nucleotide-excision repair" evidence=IBA] [GO:0006273 "lagging
strand elongation" evidence=IBA] [GO:0006266 "DNA ligation"
evidence=IBA] [GO:0005694 "chromosome" evidence=IBA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0016874 "ligase activity"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000977 InterPro:IPR012308 InterPro:IPR012309
InterPro:IPR012310 InterPro:IPR021536 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 Pfam:PF11411 PROSITE:PS50160 InterPro:IPR001357
dictyBase:DDB_G0292760 Pfam:PF00533 GO:GO:0005524 GO:GO:0005694
GenomeReviews:CM000155_GR GO:GO:0046872 GO:GO:0003677 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0000012 GO:GO:0005958
GO:GO:0006303 GO:GO:0006289 EMBL:AAFI02000196 GO:GO:0006273
eggNOG:COG1793 GO:GO:0003910 Gene3D:1.10.3260.10 TIGRFAMs:TIGR00574
KO:K10777 OMA:HMCPSTK GO:GO:0032807 HSSP:Q08387 RefSeq:XP_629472.1
ProteinModelPortal:Q54CR9 EnsemblProtists:DDB0232255 GeneID:8628862
KEGG:ddi:DDB_G0292760 ProtClustDB:CLSZ2728715 Uniprot:Q54CR9
Length = 1088
Score = 247 (92.0 bits), Expect = 2.2e-19, Sum P(2) = 2.2e-19
Identities = 79/259 (30%), Positives = 129/259 (49%)
Query: 431 PIGPMLA--KPTKGVSEIVNK-FQDMEFTCEYKYDGERAQIHYLEDGS-VEIYSRNAERN 486
PI PMLA + +S I+N +F E K+DGER QIH +DG V+ +SRN+ +
Sbjct: 384 PIKPMLANRQSIDNLSMILNSAISATQFVVEKKFDGERIQIH--KDGEQVKYFSRNSNDS 441
Query: 487 TGKFPDVVLAVSRLKKPSVRSFVLDCEIVAYDREKQKILPFQTLSTRA--RKNVSLSDIK 544
TG + + + + + R +LD E++ +D Q+ F L T A + +S S
Sbjct: 442 TGIYGSMFTPIVKECVLAERC-ILDGELIVWDSISQRFEDFGNLKTLALNKDGISGSGDP 500
Query: 545 VDV------CIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDE 598
+ + C AFDIL+ Q ++ L R L + F+ + T + +
Sbjct: 501 LGINYGKQLCFIAFDILFVKDQSVMNLPLMQRLMLLKRCVTIKSKQFEISEQTTVNSISQ 560
Query: 599 IQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIG---DSLDLVPIA 655
I L++A+ EGL++K + + Y P++R W+K+K +YI+ +G D LDLV I
Sbjct: 561 IISLLESAIINREEGLMLKNLH--SLYVPAERKDKWVKIKPEYIDGMGNGADDLDLVIIG 618
Query: 656 AFHGRG--KRTGVYGAFLL 672
++G G +R G F+L
Sbjct: 619 GYYGSGLNRRGGTISHFML 637
Score = 73 (30.8 bits), Expect = 2.2e-19, Sum P(2) = 2.2e-19
Identities = 22/80 (27%), Positives = 34/80 (42%)
Query: 679 NEEFQSICKIGTGFSEAMLEERSSSL----RSKVIPKPRPYYRFADTIS--PDVWFEPTE 732
N F S CK+G+G+++ L+ L + KP + A+ PDVW +P
Sbjct: 659 NVIFYSFCKVGSGYTDIQLKSLQKDLDPHWNNFSTSKPPSIIQLAEPFKEKPDVWIDPRV 718
Query: 733 RPETSNSPAS-IVYDSQITC 751
+ AS IV + C
Sbjct: 719 YSKVLQIKASQIVVTDKYKC 738
>POMBASE|SPCC1183.05c [details] [associations]
symbol:lig4 "DNA ligase Lig4" species:4896
"Schizosaccharomyces pombe" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003910 "DNA ligase (ATP) activity" evidence=ISO] [GO:0005524
"ATP binding" evidence=IC] [GO:0005634 "nucleus" evidence=ISO]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0006303
"double-strand break repair via nonhomologous end joining"
evidence=IMP] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0032807 "DNA ligase IV complex" evidence=TAS] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0051103 "DNA ligation
involved in DNA repair" evidence=IEA] InterPro:IPR000977
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679
PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160 InterPro:IPR001357
PomBase:SPCC1183.05c GO:GO:0005524 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0046872 GO:GO:0003677 GO:GO:0006260
GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0006303 eggNOG:COG1793
GO:GO:0003910 GO:GO:0051103 TIGRFAMs:TIGR00574 GO:GO:0032807
OrthoDB:EOG41K2MD PIR:T40845 RefSeq:NP_587888.2
ProteinModelPortal:O74833 STRING:O74833 PRIDE:O74833
EnsemblFungi:SPCC1183.05c.1 GeneID:2539042 NextBio:20800216
Uniprot:O74833
Length = 913
Score = 266 (98.7 bits), Expect = 2.9e-19, P = 2.9e-19
Identities = 88/336 (26%), Positives = 146/336 (43%)
Query: 434 PMLAK-PTKGVSEIVNKFQDMEFTCEYKYDGERAQIHYLEDGSVEIYSRNAERNTGKFPD 492
P LA K + + + + F E K DGER Q+H + G + YSRNA T +
Sbjct: 254 PQLANFKKKDLHQTLEAMGNKPFWIEEKLDGERIQLH-MSSGKFQFYSRNARSYTYAYGS 312
Query: 493 VVL-AVSRLKKPSVRSF-------VLDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIK 544
SRL + + +F +LD E+V +D + ++P+ +L + + S S
Sbjct: 313 SYFDEQSRLTQYIIGAFDKRISQIILDGEMVTWDPVLETVIPYGSLRSIFEDSSSHSSYS 372
Query: 545 VDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLD 604
+ FDILY NG+ L++ L RR L E +++I+ L
Sbjct: 373 PYYVV--FDILYLNGKSLVKYSLESRRRILEKVIVRESHRMSILPYKVGSTIEDIEAELR 430
Query: 605 AAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRT 664
+ EGL+IK +Y +R +W+K+K Y++ G+ LD + + + GRGK++
Sbjct: 431 NVIQEGSEGLVIKKPS--GSYHLGERMDDWIKVKPYYLQGFGEDLDCLILGGYFGRGKQS 488
Query: 665 GVYGAFLLAC---YD--SNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIP---KPRPYY 716
G +FL Y ++E+FQS ++G GF+ + K +P Y
Sbjct: 489 GKINSFLCGLRMDYTPKDHSEKFQSFVRVGGGFTYFDRDIIRKETEGKWLPWSSDALEYM 548
Query: 717 RFADTIS----PDVWFEPTERPETSNSPASIVYDSQ 748
A T PD+W P + A +V ++
Sbjct: 549 ELAGTKQDFEKPDMWIHPKDSLVLQIKAAEVVVSNR 584
>UNIPROTKB|Q75CA4 [details] [associations]
symbol:LIG4 "DNA ligase 4" species:284811 "Ashbya gossypii
ATCC 10895" [GO:0003910 "DNA ligase (ATP) activity" evidence=IBA]
[GO:0005694 "chromosome" evidence=IBA] [GO:0006266 "DNA ligation"
evidence=IBA] [GO:0006273 "lagging strand elongation" evidence=IBA]
[GO:0006289 "nucleotide-excision repair" evidence=IBA] [GO:0006303
"double-strand break repair via nonhomologous end joining"
evidence=IBA] [GO:0032807 "DNA ligase IV complex" evidence=IBA]
InterPro:IPR000977 InterPro:IPR012308 InterPro:IPR012309
InterPro:IPR012310 InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 PROSITE:PS00697 PROSITE:PS50160 InterPro:IPR001357
Pfam:PF00533 GO:GO:0005524 GO:GO:0005694 GO:GO:0046872
GO:GO:0003677 GO:GO:0001302 GO:GO:0000790 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0006303 GO:GO:0006289
EMBL:AE016816 GenomeReviews:AE016816_GR GO:GO:0006273
eggNOG:COG1793 GO:GO:0003910 GO:GO:0051103 TIGRFAMs:TIGR00574
KO:K10777 GO:GO:0032807 RefSeq:NP_983411.1 HSSP:Q08387
ProteinModelPortal:Q75CA4 STRING:Q75CA4 EnsemblFungi:AAS51235
GeneID:4619536 KEGG:ago:AGOS_ACR008W HOGENOM:HOG000093622
OMA:CSIANGI OrthoDB:EOG41K2MD PhylomeDB:Q75CA4 Uniprot:Q75CA4
Length = 981
Score = 257 (95.5 bits), Expect = 2.0e-18, Sum P(2) = 2.0e-18
Identities = 83/265 (31%), Positives = 125/265 (47%)
Query: 407 KIVPALLTDGVWNLS-NTCSFTPGIPIGPMLAKPTKGVSEIVNKFQDMEFTCEYKYDGER 465
+IV L D L N S G P +A+ K E V+ +F E K DG+R
Sbjct: 268 RIVAHTLYDPNERLEKNDLSVRIGYAFAPHMAQRVKIPYEKVSTKLGNDFYVEEKMDGDR 327
Query: 466 AQIHYLEDG-SVEIYSRNAERNT---GKFPDVVLAVSRLK-KPSVRSFVLDCEIVAYDRE 520
Q+HY++ G S+ +SRN T G+ + LK V+ +LD E+V+YD+E
Sbjct: 328 IQVHYMDYGNSIAYFSRNGINYTYLYGENSSKGSISNHLKFVEGVKECILDGEMVSYDKE 387
Query: 521 KQKILPFQTLSTRARKNVSLSDI-KVDVC---IYA-FDILYRNGQPLLQEQLRVRREHLY 575
Q ILPF + A V+ + +YA FD+LY NGQ L + + R+E+L
Sbjct: 388 MQCILPFGLTKSGASHQVNFETTGHTEPTYRPLYAVFDLLYLNGQLLTNQDVVKRKEYLE 447
Query: 576 DSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWL 635
+ D + I L AAV EG+++K + Y KR +W+
Sbjct: 448 KILIPSKNVVHLLSGPRCSDAEAITAALGAAVAHGSEGIVLKKAR--SKYSVGKRDDSWI 505
Query: 636 KLKKDYIESIGDSLDLVPIAAFHGR 660
K+K +Y+E+ G+++DLV I GR
Sbjct: 506 KIKPEYLENFGENMDLVVIGRDKGR 530
Score = 52 (23.4 bits), Expect = 2.0e-18, Sum P(2) = 2.0e-18
Identities = 16/56 (28%), Positives = 21/56 (37%)
Query: 680 EEFQSICKIGTGFSEAMLEERSSSLRSKVIP-----KPRPYYRFADTISPDVWFEP 730
E+F S C I G S +E R P P + F T +P W +P
Sbjct: 572 EKFISFCSIANGISNEEFKEIDRLTRGNWFPYDERKPPTDWVEFG-TKTPREWIDP 626
>UNIPROTKB|Q23RI5 [details] [associations]
symbol:TTHERM_00387050 "DNA ligase" species:312017
"Tetrahymena thermophila SB210" [GO:0003910 "DNA ligase (ATP)
activity" evidence=IBA] [GO:0005694 "chromosome" evidence=IBA]
[GO:0006266 "DNA ligation" evidence=IBA] [GO:0006273 "lagging
strand elongation" evidence=IBA] [GO:0006289 "nucleotide-excision
repair" evidence=IBA] [GO:0006303 "double-strand break repair via
nonhomologous end joining" evidence=IBA] [GO:0032807 "DNA ligase IV
complex" evidence=IBA] InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
InterPro:IPR021536 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679
Pfam:PF11411 PROSITE:PS00697 PROSITE:PS50160 InterPro:IPR001357
GO:GO:0005524 GO:GO:0005694 GO:GO:0003677 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0006303 GO:GO:0006289
GO:GO:0006273 GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10
SUPFAM:SSF117018 TIGRFAMs:TIGR00574 KO:K10777 GO:GO:0032807
EMBL:GG662644 RefSeq:XP_001019308.1 UniGene:Tth.9167
ProteinModelPortal:Q23RI5 EnsemblProtists:EAR99063 GeneID:7825974
KEGG:tet:TTHERM_00387050 ProtClustDB:CLSZ2445781 Uniprot:Q23RI5
Length = 1026
Score = 232 (86.7 bits), Expect = 6.3e-18, Sum P(2) = 6.3e-18
Identities = 71/236 (30%), Positives = 117/236 (49%)
Query: 431 PIGPMLA--KPTKGVSEIVNKFQDMEFTCEYKYDGERAQIHYLEDGSVEIYSRNAERNTG 488
PI PMLA K K + I+ + + E K+DGER Q H + S+ ++RN+ T
Sbjct: 326 PIKPMLAGRKTLKSIEAIL---KGKNYLVETKFDGERIQCHVSPE-SLMFFTRNSNNYTN 381
Query: 489 KFPDVVLAVSRLKKPSVRSFVLDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIKVDVC 548
+ ++ V R K +V S +LD E+V ++ + + F T A + D ++ +C
Sbjct: 382 IYERMIEHVRRSLKDAVHSCILDGEMVVVNKITGQRVQFGLNKTVAMER---EDDELCIC 438
Query: 549 IYAFDILYR----NGQPLLQEQ-LRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFL 603
FDILY N + L E L+ R++ L + + + + D+++I
Sbjct: 439 YKIFDILYLKTKDNKEYALTEYTLQYRKKILENLIDNQQDRVEVIFGREYSDINDILTEF 498
Query: 604 DAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHG 659
+ A+ + EG++IK +D Y P RS W+K+K DY E I D+LDL+ I + G
Sbjct: 499 NEAIHRNDEGIVIKQLD--TLYYPDDRSDKWIKMKGDYYEGIIDTLDLIVIGGYFG 552
Score = 74 (31.1 bits), Expect = 6.3e-18, Sum P(2) = 6.3e-18
Identities = 37/143 (25%), Positives = 62/143 (43%)
Query: 242 IAPAHEG--LELGIGDASIIKALAEACGRTESH----------VKKQYQEMGDLGLVAKA 289
I P H+ L G+ ++ K L+E +E +K Q +GD G V +
Sbjct: 156 IMPHHDKQRLNYGLNYKNLAKVLSEVFALSEDKRQQLLNYKRPLKDNQQVVGDFGEVVQ- 214
Query: 290 SRSSQSMMRKPDPLTITKVFDTFRLIAKEAGKDSQEKKKNRIKALLVAATDCEPQYLIRL 349
Q+ +K LTI V +A+ +D K+K ++ L AT E +++ RL
Sbjct: 215 -NVLQAFTQKAT-LTINDVDRCLDELAQPQNRDLASKEKV-LRNCLKNATSEEIKWISRL 271
Query: 350 LQSKLRIGLAEQTLLAALGQAAV 372
+ L +G+ + +LA AV
Sbjct: 272 ILKDLNLGINHEIILALFHPDAV 294
Score = 42 (19.8 bits), Expect = 1.3e-14, Sum P(2) = 1.3e-14
Identities = 23/98 (23%), Positives = 42/98 (42%)
Query: 312 FRLIAKEAGKDSQEKKKNRIKAL--LVAAT----DCEPQY---LIRLL-----QSKLRIG 357
F + K + Q KK R K + + +T C P Y ++RL+ + +L G
Sbjct: 110 FSFLVKFYNQVQQSKKGQRKKFVQRFIDSTFKTNRC-PSYTFTILRLIMPHHDKQRLNYG 168
Query: 358 LAEQTLLAALGQAAVYNEQHSKPPPNIQSPLEEAAKIV 395
L + L L + +E + N + PL++ ++V
Sbjct: 169 LNYKNLAKVLSEVFALSEDKRQQLLNYKRPLKDNQQVV 206
>UNIPROTKB|Q7SB49 [details] [associations]
symbol:lig-4 "DNA ligase 4" species:367110 "Neurospora
crassa OR74A" [GO:0003910 "DNA ligase (ATP) activity" evidence=IBA]
[GO:0005694 "chromosome" evidence=IBA] [GO:0006266 "DNA ligation"
evidence=IBA] [GO:0006273 "lagging strand elongation" evidence=IBA]
[GO:0006289 "nucleotide-excision repair" evidence=IBA] [GO:0006303
"double-strand break repair via nonhomologous end joining"
evidence=IBA] [GO:0032807 "DNA ligase IV complex" evidence=IBA]
InterPro:IPR000977 InterPro:IPR012308 InterPro:IPR012309
InterPro:IPR012310 InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 PROSITE:PS00697 PROSITE:PS50160 InterPro:IPR001357
Pfam:PF00533 GO:GO:0005524 GO:GO:0005694 GO:GO:0046872
GO:GO:0003677 GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GO:GO:0006303 GO:GO:0006289 GO:GO:0006273 eggNOG:COG1793
GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 KO:K10777 OMA:HMCPSTK GO:GO:0032807
OrthoDB:EOG41K2MD HOGENOM:HOG000176213 EMBL:AB261106
EMBL:AABX02000025 RefSeq:XP_962868.1 UniGene:Ncr.24770
ProteinModelPortal:Q7SB49 STRING:Q7SB49
EnsemblFungi:EFNCRT00000006055 GeneID:3879007 KEGG:ncr:NCU06264
Uniprot:Q7SB49
Length = 1046
Score = 251 (93.4 bits), Expect = 2.9e-17, Sum P(2) = 2.9e-17
Identities = 117/429 (27%), Positives = 188/429 (43%)
Query: 292 SSQSMMRKPDPLTITKVFDTFRLIAKEAGKDSQEKKKNRIKALLVAATDCEPQYLIRLLQ 351
S ++M +P LTI V +A +G+ Q + A E +L+R++
Sbjct: 180 SKRAMRAQPGDLTIADVNVLLDRLAAASGEAEQLPIFEEFYRQMNAE---EMMWLVRIIL 236
Query: 352 SKLRIGLAEQTLLAALGQAAVYNEQHSKPPPNIQSPLEEAAKIVKQVFSVLPVYEKIVPA 411
+R+G E+T L N H P+ ++ L + +++V +E P
Sbjct: 237 KDMRVGATERTFL---------NLWH----PDAEA-LFSVSSSLRRV-----CWELFDPE 277
Query: 412 L-LTDGVWNLSNTCSFTPGIPIGPMLAKPTKGVSEIVNKFQDMEFTCEYKYDGERAQIHY 470
L + F P + M K V + ++ EF E K DGER Q+H
Sbjct: 278 FRLEQQETGIKLMQCFQPQLAQFQMTTTWEKLVKNLGVTEENPEFWIEEKLDGERMQMHM 337
Query: 471 LEDGSVE------IYSRNAERNT---GK-FPDVVLAVSR-LKKP---SVRSFVLDCEIVA 516
+ED +V +SR A+ T G+ D A++R L K VR+ +LD E++
Sbjct: 338 IEDDTVPGGFRFAFWSRKAKDYTYLYGESLGDEQSALTRHLHKAFDDGVRNLILDGEMIT 397
Query: 517 YDREKQKILPFQTLSTRA---RKNVSLSDIKVDVCIY-AFDILYRNGQPLLQEQLRVRRE 572
+D + K++PF TL T A +KN S + + +Y FDIL N +PL + L RR
Sbjct: 398 WDIDIDKMVPFGTLKTAALEQQKNPSKAGPRP---LYRVFDILLLNDKPLTEYTLNDRRR 454
Query: 573 HLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSL 632
L + + + D I+ L V + EGL++K R + Y + R+
Sbjct: 455 ALERAVVGVHRRLEILPFERATSPDAIEPLLRRVVAEASEGLVLKN-PR-SRYSLNSRNN 512
Query: 633 NWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNN---------EEFQ 683
+W+K+K +Y+ G+SLD V + + G G+R G +FL S N E+
Sbjct: 513 DWIKVKPEYMSDFGESLDCVVVGGYFGSGRRGGTLSSFLCGVRVSQNFIKSGNASAEKCL 572
Query: 684 SICKIGTGF 692
S K+G GF
Sbjct: 573 SFVKVGGGF 581
Score = 48 (22.0 bits), Expect = 2.9e-17, Sum P(2) = 2.9e-17
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 724 PDVWFEPTERPETSNSPASIVYDSQ 748
PDVW P++ S ASI Q
Sbjct: 623 PDVWIRPSDSVVISVKAASITQSDQ 647
>FB|FBgn0030506 [details] [associations]
symbol:Lig4 "Ligase4" species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=ISS] [GO:0003910 "DNA ligase (ATP)
activity" evidence=ISS;IBA] [GO:0010212 "response to ionizing
radiation" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0000723 "telomere maintenance" evidence=IGI]
[GO:0006303 "double-strand break repair via nonhomologous end
joining" evidence=IMP] [GO:0006273 "lagging strand elongation"
evidence=IBA] [GO:0032807 "DNA ligase IV complex" evidence=IBA]
[GO:0006266 "DNA ligation" evidence=IBA] [GO:0005694 "chromosome"
evidence=IBA] [GO:0006289 "nucleotide-excision repair"
evidence=IBA] InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 PROSITE:PS50160 InterPro:IPR001357 GO:GO:0005524
GO:GO:0005694 GO:GO:0003677 GO:GO:0010212 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0000723 GO:GO:0006303
GO:GO:0006289 GO:GO:0006273 eggNOG:COG1793 GO:GO:0003910
TIGRFAMs:TIGR00574 GO:GO:0032807 EMBL:AY119169
ProteinModelPortal:Q8MS06 SMR:Q8MS06 STRING:Q8MS06 PaxDb:Q8MS06
PRIDE:Q8MS06 FlyBase:FBgn0030506 InParanoid:Q8MS06
OrthoDB:EOG4NS1T2 ArrayExpress:Q8MS06 Bgee:Q8MS06 Uniprot:Q8MS06
Length = 918
Score = 244 (91.0 bits), Expect = 7.3e-17, P = 7.3e-17
Identities = 121/455 (26%), Positives = 186/455 (40%)
Query: 300 PDPLTITKVFDTFRLIAKEAGKDSQEKKKNRIKALLVAATDCEPQYLIRLLQSKLRIGLA 359
P L + ++ IA E D++ K++ I+ A+ + E ++LIRLL L +G+
Sbjct: 138 PSNLRLKEIHQMLDTIANE---DTEVKQQQLIRFTEQASPE-EQKWLIRLLLKSLGLGIG 193
Query: 360 EQTLLAALGQAAVYNEQHSKPPPNIQ--SPLEEAAKIVKQVFSVLPVYEKIVPALLTDGV 417
EQ + L H K Q S L ++ + L V
Sbjct: 194 EQKIFGVL---------HPKAQDIYQRCSDLGHVCNLLADRTTDLDASSSKDSKAAVKFV 244
Query: 418 WNLSNTCSFTPGIPIGPMLAKPTKGVSEIVNKFQDMEFTCEYKYDGERAQIHYLEDGSVE 477
NL++ P I PML + G +I Q E K DGER Q+H ++ G
Sbjct: 245 -NLNSV--IRPFHQIRPMLCERFPG--DIQELMQSDVLYLETKMDGERFQLH-IDRGRFM 298
Query: 478 IYSRNA---ERNTGKFPDVVLAVSRLKK--P-SVRSFVLDCEIVAYDREKQKILPFQTLS 531
SRN RN G D +L+ P + S +LD E++ +D K L F+
Sbjct: 299 YISRNGVDYTRNFGHSYDHGTLTPKLRGLLPLGLESIILDGEMMVWDTNK---LRFREKG 355
Query: 532 TRARKNVSLSDIKVD----VCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFFQF 587
+N + +K + C +D+LY NGQ LL R L E+ G Q
Sbjct: 356 ----ENTDVKSLKPEGSWQPCFVVYDLLYFNGQSLLDHTYIQRAYKLQKLIVEQSGVLQL 411
Query: 588 ATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKR-SLNWLKLKKDYIESIG 646
+ E + A+D+ EG+++K + + Y+P R W K K DYI+ +
Sbjct: 412 MRARKIGSVQEFNELFQQALDSHAEGIVLKK--QGSRYQPGVRLGGGWYKDKADYIKGLI 469
Query: 647 DSLDLVPIAAFHGRGKRTGVYGAFLLACYD------SNNEEFQSICKIGTGFSE-AMLEE 699
D++ I AF+ R KRT V +FLL SN E SI + + +L
Sbjct: 470 TEFDVLIIGAFYNR-KRTFV-DSFLLGVLQPAPPGSSNRPEVFSIGVVANNTKQRGVLNH 527
Query: 700 RSSSLRSKVIPKPRP---YYRFADTIS-PDVWFEP 730
V+ +P P +Y+ + PD+W EP
Sbjct: 528 TLKPHWHDVVNEPPPLWFHYKPKERSGCPDLWIEP 562
>ASPGD|ASPL0000057134 [details] [associations]
symbol:AN0097 species:162425 "Emericella nidulans"
[GO:0005622 "intracellular" evidence=IEA] [GO:0003910 "DNA ligase
(ATP) activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006303 "double-strand
break repair via nonhomologous end joining" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] InterPro:IPR000977
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679
PROSITE:PS00697 PROSITE:PS50160 InterPro:IPR001357 Pfam:PF00533
GO:GO:0005524 GO:GO:0005694 EMBL:BN001308 GO:GO:0046872
GO:GO:0003677 GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
EMBL:AACD01000003 GO:GO:0006303 GO:GO:0006289 GO:GO:0006273
eggNOG:COG1793 GO:GO:0003910 GO:GO:0051103 TIGRFAMs:TIGR00574
KO:K10777 OMA:HMCPSTK GO:GO:0032807 OrthoDB:EOG41K2MD
RefSeq:XP_657701.1 ProteinModelPortal:Q5BH83 STRING:Q5BH83
EnsemblFungi:CADANIAT00002653 GeneID:2875873 KEGG:ani:AN0097.2
HOGENOM:HOG000176213 Uniprot:Q5BH83
Length = 1009
Score = 253 (94.1 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 99/344 (28%), Positives = 152/344 (44%)
Query: 452 DMEFTCEYKYDGERAQIHYLEDGSV------EIYSRNAERNT-----GKFPDVVLAVSRL 500
D F E K DGER Q+H + D S +SR A+ T G + + L
Sbjct: 309 DPVFWIEEKLDGERMQLHMVSDASAPGGRRFRFWSRKAKDYTYLYGNGIYDEAGSLTRHL 368
Query: 501 KKP---SVRSFVLDCEIVAYDREKQKILPFQTLSTRA---RKNVSLSDIKVDVCIYAFDI 554
K V + +LD E++ ++ E+ PF TL T A ++N I FDI
Sbjct: 369 KDAFADGVDNLILDGEMITWNTEQDAPEPFGTLKTAALSEQRNPFRQGIHP--LFRVFDI 426
Query: 555 LYRNGQPLLQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGL 614
LY NG+ L + LR RR L + F+ + + E++ L AV + EGL
Sbjct: 427 LYLNGRDLTRYTLRDRRNALQKVIKPVHRRFEVHSYEEATTKAEVEASLRKAVAEASEGL 486
Query: 615 IIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLL-- 672
++K R + Y ++R +W+K+K +Y+ G+SLDLV I ++G G R G +FL
Sbjct: 487 VLKN-PR-SPYRLNERHDDWMKVKPEYMTEFGESLDLVVIGGYYGSGHRGGKLSSFLCGL 544
Query: 673 ------ACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVI---PKPRPYYRFADTIS 723
+ SN + S CK+G GF+ A K + PK +P + +
Sbjct: 545 RVDEGQSSQGSNPTKCYSFCKVGGGFTAADYANIRHHTDGKWVEWNPK-KPPTTYIELAG 603
Query: 724 PDVWFEPTERPETSNSPASIVYDSQITCLPSSYMPFSRSYFRFG 767
D +E RP+ P DS + C+ ++ + S FR G
Sbjct: 604 GDSQYE---RPDMWIKPE----DSVVICVKAASVSVS-DQFRIG 639
Score = 40 (19.1 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 7/21 (33%), Positives = 15/21 (71%)
Query: 342 EPQYLIRLLQSKLRIGLAEQT 362
E +LIR++ ++++G E+T
Sbjct: 218 ELAWLIRIILRQMKLGATERT 238
>UNIPROTKB|Q5BH83 [details] [associations]
symbol:lig4 "DNA ligase 4" species:227321 "Aspergillus
nidulans FGSC A4" [GO:0003910 "DNA ligase (ATP) activity"
evidence=IBA] [GO:0005694 "chromosome" evidence=IBA] [GO:0006266
"DNA ligation" evidence=IBA] [GO:0006273 "lagging strand
elongation" evidence=IBA] [GO:0006289 "nucleotide-excision repair"
evidence=IBA] [GO:0006303 "double-strand break repair via
nonhomologous end joining" evidence=IBA] [GO:0032807 "DNA ligase IV
complex" evidence=IBA] InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 PROSITE:PS00697
PROSITE:PS50160 InterPro:IPR001357 Pfam:PF00533 GO:GO:0005524
GO:GO:0005694 EMBL:BN001308 GO:GO:0046872 GO:GO:0003677
GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 EMBL:AACD01000003
GO:GO:0006303 GO:GO:0006289 GO:GO:0006273 eggNOG:COG1793
GO:GO:0003910 GO:GO:0051103 TIGRFAMs:TIGR00574 KO:K10777
OMA:HMCPSTK GO:GO:0032807 OrthoDB:EOG41K2MD RefSeq:XP_657701.1
ProteinModelPortal:Q5BH83 STRING:Q5BH83
EnsemblFungi:CADANIAT00002653 GeneID:2875873 KEGG:ani:AN0097.2
HOGENOM:HOG000176213 Uniprot:Q5BH83
Length = 1009
Score = 253 (94.1 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 99/344 (28%), Positives = 152/344 (44%)
Query: 452 DMEFTCEYKYDGERAQIHYLEDGSV------EIYSRNAERNT-----GKFPDVVLAVSRL 500
D F E K DGER Q+H + D S +SR A+ T G + + L
Sbjct: 309 DPVFWIEEKLDGERMQLHMVSDASAPGGRRFRFWSRKAKDYTYLYGNGIYDEAGSLTRHL 368
Query: 501 KKP---SVRSFVLDCEIVAYDREKQKILPFQTLSTRA---RKNVSLSDIKVDVCIYAFDI 554
K V + +LD E++ ++ E+ PF TL T A ++N I FDI
Sbjct: 369 KDAFADGVDNLILDGEMITWNTEQDAPEPFGTLKTAALSEQRNPFRQGIHP--LFRVFDI 426
Query: 555 LYRNGQPLLQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGL 614
LY NG+ L + LR RR L + F+ + + E++ L AV + EGL
Sbjct: 427 LYLNGRDLTRYTLRDRRNALQKVIKPVHRRFEVHSYEEATTKAEVEASLRKAVAEASEGL 486
Query: 615 IIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLL-- 672
++K R + Y ++R +W+K+K +Y+ G+SLDLV I ++G G R G +FL
Sbjct: 487 VLKN-PR-SPYRLNERHDDWMKVKPEYMTEFGESLDLVVIGGYYGSGHRGGKLSSFLCGL 544
Query: 673 ------ACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVI---PKPRPYYRFADTIS 723
+ SN + S CK+G GF+ A K + PK +P + +
Sbjct: 545 RVDEGQSSQGSNPTKCYSFCKVGGGFTAADYANIRHHTDGKWVEWNPK-KPPTTYIELAG 603
Query: 724 PDVWFEPTERPETSNSPASIVYDSQITCLPSSYMPFSRSYFRFG 767
D +E RP+ P DS + C+ ++ + S FR G
Sbjct: 604 GDSQYE---RPDMWIKPE----DSVVICVKAASVSVS-DQFRIG 639
Score = 40 (19.1 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 7/21 (33%), Positives = 15/21 (71%)
Query: 342 EPQYLIRLLQSKLRIGLAEQT 362
E +LIR++ ++++G E+T
Sbjct: 218 ELAWLIRIILRQMKLGATERT 238
>UNIPROTKB|B4E135 [details] [associations]
symbol:LIG1 "DNA ligase 1" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003910 "DNA ligase
(ATP) activity" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
InterPro:IPR012308 Pfam:PF04675 GO:GO:0003677 GO:GO:0006281
GO:GO:0006310 EMBL:AC011466 GO:GO:0003910 Gene3D:1.10.3260.10
SUPFAM:SSF117018 UniGene:Hs.1770 HGNC:HGNC:6598 ChiTaRS:LIG1
EMBL:AK303644 IPI:IPI01011052 SMR:B4E135 Ensembl:ENST00000542460
Uniprot:B4E135
Length = 415
Score = 230 (86.0 bits), Expect = 4.1e-16, P = 4.1e-16
Identities = 59/185 (31%), Positives = 93/185 (50%)
Query: 93 DTQTPKTTNSVVGEKIQEVAEEPSNDLVKPISNQIDNPIDSEKESQPTPPSPKKR-KVNV 151
+T T + V K QE+ EE + KP P P P+ KK K
Sbjct: 162 ETPTESVSEPEVATK-QELQEE--EEQTKPPRRA---PKTLSSFFTPRKPAVKKEVKEEE 215
Query: 152 NSVSAKEKIAELKSNIVLLKKKAGEFDPKMVACWEKGERVPFIFLSLVFDMISNETGRIL 211
KE AE + + P ACW+ G++VP++ ++ F+ I + R+
Sbjct: 216 PGAPGKEGAAEGPLDPSGYNPAKNNYHPVEDACWKPGQKVPYLAVARTFEKIEEVSARLR 275
Query: 212 ITDIVCNMLRTVMETTPEDLVPVVYLAANKIAPAHEGLELGIGDASIIKALAEACGR--- 268
+ + + N+LR+V+ +P DL+PV+YL+ N + P +GLELG+GD ++KA+A+A GR
Sbjct: 276 MVETLSNLLRSVVALSPPDLLPVLYLSLNHLGPPQQGLELGVGDGVLLKAVAQATGRERR 335
Query: 269 -TESH 272
T SH
Sbjct: 336 ETRSH 340
>CGD|CAL0001558 [details] [associations]
symbol:LIG4 species:5476 "Candida albicans" [GO:0003909 "DNA
ligase activity" evidence=IGI;ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0009405 "pathogenesis" evidence=IGI;IMP]
[GO:0044182 "filamentous growth of a population of unicellular
organisms" evidence=IMP] [GO:0032807 "DNA ligase IV complex"
evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0030447 "filamentous growth" evidence=IMP] [GO:0001302
"replicative cell aging" evidence=IEA] [GO:0006303 "double-strand
break repair via nonhomologous end joining" evidence=IEA]
[GO:0003910 "DNA ligase (ATP) activity" evidence=IEA]
InterPro:IPR000977 InterPro:IPR012308 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 InterPro:IPR001357 CGD:CAL0001558
Pfam:PF00533 GO:GO:0005524 GO:GO:0005634 GO:GO:0009405
GO:GO:0046872 GO:GO:0003677 GO:GO:0006260 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0044182 eggNOG:COG1793
GO:GO:0003910 GO:GO:0051103 TIGRFAMs:TIGR00574 KO:K10777
EMBL:X95001 EMBL:AACQ01000088 EMBL:AACQ01000087 RefSeq:XP_715274.1
RefSeq:XP_715339.1 ProteinModelPortal:P52496 STRING:P52496
GeneID:3642986 GeneID:3643043 KEGG:cal:CaO19.13220
KEGG:cal:CaO19.5798 GO:GO:0003909 Uniprot:P52496
Length = 928
Score = 239 (89.2 bits), Expect = 5.7e-15, Sum P(2) = 5.7e-15
Identities = 79/300 (26%), Positives = 138/300 (46%)
Query: 454 EFTCEYKYDGERAQIHYLEDG-SVEIYSRNAERNT---GK---FPDVVLAVSRLKKPSVR 506
+F E K DG+R +H +DG S + +SR + + G+ F + ++ +++
Sbjct: 298 KFYIEEKMDGDRMLLH--KDGDSFKFFSRRLKDYSYLYGESFQFGALTKFLAHAFAGNIQ 355
Query: 507 SFVLDCEIVAYDREKQKILPFQTLSTRA-----RKNVSLSDIKVDVC---IYAFDILYRN 558
S +LD E+VAYD E+ ILPF TL + A R+ ++ + FDIL+ N
Sbjct: 356 SVILDGEMVAYDYERNVILPFGTLKSSAIQESVRQFTTIDQYEQQTAYPFFLVFDILFLN 415
Query: 559 GQPLLQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKT 618
G+ L L R+ L P F+ T ++I++ + V + CEGL++K
Sbjct: 416 GKDLTNYPLFFRKNILNRILRPIPNRFEVLDTRLGSSSEDIERAIREVVSSRCEGLVLKN 475
Query: 619 MDRDATYE-PSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDS 677
+ + YE R+ +W+K+K +Y+E G++LDLV I GK + +++
Sbjct: 476 VQ--SKYEIDGFRNPDWIKVKPEYLEKFGENLDLVVI------GKSPAIKNSYMCGLKSV 527
Query: 678 NNEEFQSICKIGTGFSEAMLE--ERSSS---LRSKVIPKPRPYYRFADTISPDVWFEPTE 732
+ + S C G + ER + +++ V P +F I P W P++
Sbjct: 528 TDGVYYSFCTCANGIEIEEFDKIERLTHGKWIKTDVAMPPESLIKFGTKI-PTFWIHPSD 586
Score = 37 (18.1 bits), Expect = 5.7e-15, Sum P(2) = 5.7e-15
Identities = 9/39 (23%), Positives = 18/39 (46%)
Query: 92 LDTQTPKTTNSVVGEKIQEVAEEPSNDLVKPISNQIDNP 130
L+ T NS + + E + D++KP+ + + P
Sbjct: 152 LEEYTVPQINSSLDQLALEKVSQGQIDILKPLFDNLSIP 190
>UNIPROTKB|P52496 [details] [associations]
symbol:LIG4 "DNA ligase 4" species:237561 "Candida albicans
SC5314" [GO:0003909 "DNA ligase activity" evidence=IGI;ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0009405 "pathogenesis"
evidence=IGI;IMP] [GO:0030447 "filamentous growth" evidence=IMP]
[GO:0044182 "filamentous growth of a population of unicellular
organisms" evidence=IMP] InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012310 InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675
PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160 InterPro:IPR001357
CGD:CAL0001558 Pfam:PF00533 GO:GO:0005524 GO:GO:0005634
GO:GO:0009405 GO:GO:0046872 GO:GO:0003677 GO:GO:0006260
GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0044182
eggNOG:COG1793 GO:GO:0003910 GO:GO:0051103 TIGRFAMs:TIGR00574
KO:K10777 EMBL:X95001 EMBL:AACQ01000088 EMBL:AACQ01000087
RefSeq:XP_715274.1 RefSeq:XP_715339.1 ProteinModelPortal:P52496
STRING:P52496 GeneID:3642986 GeneID:3643043 KEGG:cal:CaO19.13220
KEGG:cal:CaO19.5798 GO:GO:0003909 Uniprot:P52496
Length = 928
Score = 239 (89.2 bits), Expect = 5.7e-15, Sum P(2) = 5.7e-15
Identities = 79/300 (26%), Positives = 138/300 (46%)
Query: 454 EFTCEYKYDGERAQIHYLEDG-SVEIYSRNAERNT---GK---FPDVVLAVSRLKKPSVR 506
+F E K DG+R +H +DG S + +SR + + G+ F + ++ +++
Sbjct: 298 KFYIEEKMDGDRMLLH--KDGDSFKFFSRRLKDYSYLYGESFQFGALTKFLAHAFAGNIQ 355
Query: 507 SFVLDCEIVAYDREKQKILPFQTLSTRA-----RKNVSLSDIKVDVC---IYAFDILYRN 558
S +LD E+VAYD E+ ILPF TL + A R+ ++ + FDIL+ N
Sbjct: 356 SVILDGEMVAYDYERNVILPFGTLKSSAIQESVRQFTTIDQYEQQTAYPFFLVFDILFLN 415
Query: 559 GQPLLQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKT 618
G+ L L R+ L P F+ T ++I++ + V + CEGL++K
Sbjct: 416 GKDLTNYPLFFRKNILNRILRPIPNRFEVLDTRLGSSSEDIERAIREVVSSRCEGLVLKN 475
Query: 619 MDRDATYE-PSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDS 677
+ + YE R+ +W+K+K +Y+E G++LDLV I GK + +++
Sbjct: 476 VQ--SKYEIDGFRNPDWIKVKPEYLEKFGENLDLVVI------GKSPAIKNSYMCGLKSV 527
Query: 678 NNEEFQSICKIGTGFSEAMLE--ERSSS---LRSKVIPKPRPYYRFADTISPDVWFEPTE 732
+ + S C G + ER + +++ V P +F I P W P++
Sbjct: 528 TDGVYYSFCTCANGIEIEEFDKIERLTHGKWIKTDVAMPPESLIKFGTKI-PTFWIHPSD 586
Score = 37 (18.1 bits), Expect = 5.7e-15, Sum P(2) = 5.7e-15
Identities = 9/39 (23%), Positives = 18/39 (46%)
Query: 92 LDTQTPKTTNSVVGEKIQEVAEEPSNDLVKPISNQIDNP 130
L+ T NS + + E + D++KP+ + + P
Sbjct: 152 LEEYTVPQINSSLDQLALEKVSQGQIDILKPLFDNLSIP 190
>UNIPROTKB|I3L9T2 [details] [associations]
symbol:I3L9T2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0051103 "DNA ligation involved in DNA repair"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003910 "DNA ligase (ATP) activity"
evidence=IEA] InterPro:IPR000977 InterPro:IPR012309
InterPro:IPR012310 InterPro:IPR016059 Pfam:PF01068 Pfam:PF04679
PROSITE:PS00333 PROSITE:PS50160 InterPro:IPR001357 GO:GO:0005524
GO:GO:0006260 GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GO:GO:0003910 GO:GO:0051103 TIGRFAMs:TIGR00574
GeneTree:ENSGT00700000104500 EMBL:FP312781
Ensembl:ENSSSCT00000023206 OMA:FRISKEH Uniprot:I3L9T2
Length = 390
Score = 210 (79.0 bits), Expect = 5.8e-14, P = 5.8e-14
Identities = 46/144 (31%), Positives = 78/144 (54%)
Query: 570 RREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSK 629
RR+ L+D+ E P F+ ++ ++ + EGL++K D TYEP K
Sbjct: 8 RRKFLHDNMVEIPNRIMFSEMKQVSKASDLVDMINRVIREGLEGLVLK--DVKGTYEPGK 65
Query: 630 RSLNWLKLKKDYIE--SIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICK 687
R +WLK+KKDY+ ++ D+ DLV + AF+G+G + G+ FL+ CYD +++++ ++ K
Sbjct: 66 R--HWLKVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFLMGCYDPSSQKWCTVTK 123
Query: 688 IGTGFSEAMLEERSSSLRSKVIPK 711
G +A L + L I K
Sbjct: 124 CAGGHDDATLARLQTELDMVKISK 147
>TAIR|locus:2175544 [details] [associations]
symbol:ATLIG4 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003909 "DNA ligase
activity" evidence=IEA] [GO:0003910 "DNA ligase (ATP) activity"
evidence=IEA;IDA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0006266 "DNA ligation" evidence=IBA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0032807 "DNA ligase IV complex" evidence=IBA]
[GO:0051103 "DNA ligation involved in DNA repair" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0006974 "response
to DNA damage stimulus" evidence=IMP] [GO:0010165 "response to
X-ray" evidence=IMP] [GO:0015074 "DNA integration" evidence=IMP]
[GO:0000723 "telomere maintenance" evidence=IMP] [GO:0006302
"double-strand break repair" evidence=IMP] [GO:0009506
"plasmodesma" evidence=IDA] [GO:0048046 "apoplast" evidence=IDA]
InterPro:IPR000977 InterPro:IPR012308 InterPro:IPR012309
InterPro:IPR012310 InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160
InterPro:IPR001357 Pfam:PF00533 GO:GO:0009506 GO:GO:0005524
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872 GO:GO:0003677
GO:GO:0048046 GO:GO:0006260 EMBL:AB023042 GO:GO:0006310
GO:GO:0006302 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0010165
eggNOG:COG1793 GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10
TIGRFAMs:TIGR00574 EMBL:AF233527 IPI:IPI00524567 RefSeq:NP_568851.2
UniGene:At.49182 UniGene:At.69713 ProteinModelPortal:Q9LL84
SMR:Q9LL84 IntAct:Q9LL84 STRING:Q9LL84 PaxDb:Q9LL84 PRIDE:Q9LL84
EnsemblPlants:AT5G57160.1 GeneID:835822 KEGG:ath:AT5G57160
GeneFarm:4927 TAIR:At5g57160 HOGENOM:HOG000083793 InParanoid:Q9LL84
KO:K10777 OMA:HMCPSTK PhylomeDB:Q9LL84 ProtClustDB:CLSN2680547
Genevestigator:Q9LL84 GermOnline:AT5G57160 GO:GO:0032807
Uniprot:Q9LL84
Length = 1219
Score = 207 (77.9 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
Identities = 78/311 (25%), Positives = 138/311 (44%)
Query: 429 GIPIGPMLAKPTKGVSEIVNKFQDMEFTCEYKYDGERAQIHYLEDGS-VEIYSRNAERNT 487
G + P LA V+ K + E K+DG+R QIH ++G+ + +SRN ++
Sbjct: 222 GKAVRPQLAMRIGDVNAAWKKLHGKDVVAECKFDGDRIQIH--KNGTDIHYFSRNFLDHS 279
Query: 488 GKFPDVVLAVSRL--KKPSVRSFVLDCEIVAYDREKQKILPF---QTLSTRARKNVSLSD 542
+ A+S L + V +LD E++ +D + F Q ++ AR+ + D
Sbjct: 280 ----EYAHAMSDLIVQNILVDKCILDGEMLVWDTSLNRFAEFGSNQEIAKAAREGL---D 332
Query: 543 IKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLD----- 597
+C AFD+LY ++ + L+ R E L + G + +++
Sbjct: 333 SHKQLCYVAFDVLYVGDTSVIHQSLKERHELLKKVVKPLKGRLEVLVPEGGLNVHRPSGE 392
Query: 598 -----------EIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIG 646
++++F V+ EG+++K D ++ +EP RS W+KLK +YI + G
Sbjct: 393 PSWSIVVHAAADVERFFKETVENRDEGIVLK--DLESKWEPGDRSGKWMKLKPEYIRA-G 449
Query: 647 DSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRS 706
LD++ I ++G G+R G FL+A D E + F L +
Sbjct: 450 ADLDVLIIGGYYGSGRRGGEVAQFLVALAD--RAEANVYPRRFMSFCRVGTGLSDDELNT 507
Query: 707 KVIPKPRPYYR 717
V+ K +PY+R
Sbjct: 508 -VVSKLKPYFR 517
Score = 190 (71.9 bits), Expect = 1.9e-11, Sum P(2) = 1.9e-11
Identities = 49/149 (32%), Positives = 78/149 (52%)
Query: 598 EIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAF 657
++++F V+ EG+++K D ++ +EP RS W+KLK +YI + G LD++ I +
Sbjct: 404 DVERFFKETVENRDEGIVLK--DLESKWEPGDRSGKWMKLKPEYIRA-GADLDVLIIGGY 460
Query: 658 HGRGKRTGVYGAFLLACYD---SN--NEEFQSICKIGTGFSEAMLEERSSSL----RSKV 708
+G G+R G FL+A D +N F S C++GTG S+ L S L R
Sbjct: 461 YGSGRRGGEVAQFLVALADRAEANVYPRRFMSFCRVGTGLSDDELNTVVSKLKPYFRKNE 520
Query: 709 IPKPRP--YYRFADTIS--PDVWFEPTER 733
PK P +Y+ + PDVW + E+
Sbjct: 521 HPKKAPPSFYQVTNHSKERPDVWIDSPEK 549
Score = 57 (25.1 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
Identities = 18/83 (21%), Positives = 43/83 (51%)
Query: 281 GDLGLVAKASRSSQSMMRKPDPLTITKVFDTFRLIAKEAGKDSQEKKKNRIKALLVAATD 340
G+ L+A + M LTI ++ D L+ + A +++ +K + L+
Sbjct: 104 GNFSLIAAEVLQRRQGMASGG-LTIKELND---LLDRLASSENRAEKTLVLSTLIQKTNA 159
Query: 341 CEPQYLIRLLQSKLRIGLAEQTL 363
E +++IR++ L++G++E+++
Sbjct: 160 QEMKWVIRIILKDLKLGMSEKSI 182
>UNIPROTKB|Q89BW7 [details] [associations]
symbol:blr8031 "Blr8031 protein" species:224911
"Bradyrhizobium japonicum USDA 110" [GO:0003910 "DNA ligase (ATP)
activity" evidence=IBA] [GO:0005694 "chromosome" evidence=IBA]
[GO:0006266 "DNA ligation" evidence=IBA] [GO:0006273 "lagging
strand elongation" evidence=IBA] [GO:0006289 "nucleotide-excision
repair" evidence=IBA] InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF01068 Pfam:PF04679 PROSITE:PS00697
PROSITE:PS50160 GO:GO:0005524 GO:GO:0005694 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006289
GO:GO:0006273 GO:GO:0003910 GO:GO:0051103 KO:K01971 EMBL:BA000040
GenomeReviews:BA000040_GR HOGENOM:HOG000222509 InterPro:IPR014146
TIGRFAMs:TIGR02779 RefSeq:NP_774671.1 ProteinModelPortal:Q89BW7
GeneID:1049816 KEGG:bja:blr8031 PATRIC:21200072 OMA:NSERNTG
ProtClustDB:CLSK820690 BioCyc:BJAP224911:GJEJ-8088-MONOMER
Uniprot:Q89BW7
Length = 316
Score = 192 (72.6 bits), Expect = 2.6e-12, P = 2.6e-12
Identities = 76/266 (28%), Positives = 114/266 (42%)
Query: 450 FQDMEFTCEYKYDGERAQIHYLEDGSVEIYSRNAERNTGKFPDVVLAVSRLKKPSVRSFV 509
F D + E KYDG R I + DG +YSRN + + + +V A+ +K +V
Sbjct: 23 FDDPAWVFEDKYDGFR-MIAEIRDGRAALYSRNGKLISRSYTEVAAALEMVKGDAV---- 77
Query: 510 LDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRV 569
+D E+VA K + FQ L R L +AFD+++ NG+ L + L
Sbjct: 78 IDGELVAIG--KDGVSHFQLLQNALRHEAKL-------LYFAFDLMFANGEDLRKRPLLE 128
Query: 570 RREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSK 629
R+E L G F+ + +KF A EG++ K +D Y
Sbjct: 129 RKERLKTILPRH-GLIGFSRHRKG----KGRKFFAEAERGGLEGIMAKRID--GAYASGS 181
Query: 630 RSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIG 689
R+ +WLK+K + V I F + +GA +LA + E ++ I +G
Sbjct: 182 RTPDWLKIKTAKRQE-------VVIVGFTAPRRTRPFFGALVLAVREK--ESWRYIGHVG 232
Query: 690 TGFSEAMLEERSSSL-RSKVIPKPRP 714
TGFS L E S L R +V P P
Sbjct: 233 TGFSHQTLAELHSRLTRLQVAKSPFP 258
>WB|WBGene00002986 [details] [associations]
symbol:lig-4 species:6239 "Caenorhabditis elegans"
[GO:0006281 "DNA repair" evidence=IEA;IMP] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003910 "DNA ligase (ATP) activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0007126 "meiosis" evidence=IMP] InterPro:IPR012308
InterPro:IPR012310 Pfam:PF01068 Pfam:PF04675 PROSITE:PS50160
InterPro:IPR001357 GO:GO:0005524 GO:GO:0009792 GO:GO:0007126
GO:GO:0005694 GO:GO:0003677 GO:GO:0006310 InterPro:IPR012340
SUPFAM:SSF50249 SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0006303
GO:GO:0006289 EMBL:FO080423 GO:GO:0006273 eggNOG:COG1793
GO:GO:0003910 KO:K10777 GO:GO:0032807 GeneTree:ENSGT00700000104500
RefSeq:NP_498653.2 ProteinModelPortal:Q95YE6 SMR:Q95YE6
IntAct:Q95YE6 MINT:MINT-228244 STRING:Q95YE6 PaxDb:Q95YE6
EnsemblMetazoa:C07H6.1 GeneID:176067 KEGG:cel:CELE_C07H6.1
UCSC:C07H6.1 CTD:176067 WormBase:C07H6.1 HOGENOM:HOG000018802
InParanoid:Q95YE6 OMA:NGWFKLK NextBio:890968 Uniprot:Q95YE6
Length = 741
Score = 194 (73.4 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 73/285 (25%), Positives = 126/285 (44%)
Query: 434 PMLAKPTKGVSEIVN--KFQDMEFTCEYKYDGERAQIHYLEDGSVEIYSRNAERNTGKFP 491
PML + K N KF +F + K+DGE +H + ++RN + ++
Sbjct: 231 PMLLQKQKRGDWYANIEKFGGQKFFLQTKFDGENVLLHK-KGNEYRWFTRNNNDFSKEYG 289
Query: 492 DVVLAVSRLKKPSVRSF--------VLDCEIVAYDREKQKILPFQTLSTRARKNV-SLSD 542
D +A+ +L + SF + +CE++ +D++ +K+ ST + V S
Sbjct: 290 DSSMAIGKLSS-RIHSFFNKECESAIFNCELMLWDKKTKKLCRHNDASTTSDAQVLSFRH 348
Query: 543 IKVD----VCIYAFDILYRNGQPLLQEQLRVRREHLYDS---FEEEPGFFQFATTLTSID 595
+K D + + FD+LY NG+P L R E L + E E F A
Sbjct: 349 VKPDDNQQLTVVLFDLLYLNGKPFFGAPLHQRLEMLKIAPLKKEREDTIF-VAKHEEGSK 407
Query: 596 LDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLN--WLKLKKDYIESIGDSLDLVP 653
++IQ+F + A+ + EG+++K D + Y +RS + W KLK + LDL
Sbjct: 408 KEDIQQFFEIAMANNEEGIVVKRTD--SVYVKGQRSASNGWFKLKPSASKDC--DLDLAL 463
Query: 654 IAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLE 698
+A G G R G + A +D ++++ G S+ + E
Sbjct: 464 VAVHPGAG-RNGKT-LYRFAAFDEKTQDYKLCLSCSYGLSDTVRE 506
>UNIPROTKB|Q95YE6 [details] [associations]
symbol:lig-4 "Protein LIG-4" species:6239 "Caenorhabditis
elegans" [GO:0032807 "DNA ligase IV complex" evidence=IBA]
[GO:0006303 "double-strand break repair via nonhomologous end
joining" evidence=IBA] [GO:0006289 "nucleotide-excision repair"
evidence=IBA] [GO:0006273 "lagging strand elongation" evidence=IBA]
[GO:0006266 "DNA ligation" evidence=IBA] [GO:0005694 "chromosome"
evidence=IBA] [GO:0003910 "DNA ligase (ATP) activity" evidence=IBA]
InterPro:IPR012308 InterPro:IPR012310 Pfam:PF01068 Pfam:PF04675
PROSITE:PS50160 InterPro:IPR001357 GO:GO:0005524 GO:GO:0009792
GO:GO:0007126 GO:GO:0005694 GO:GO:0003677 GO:GO:0006310
InterPro:IPR012340 SUPFAM:SSF50249 SUPFAM:SSF52113 PROSITE:PS50172
GO:GO:0006303 GO:GO:0006289 EMBL:FO080423 GO:GO:0006273
eggNOG:COG1793 GO:GO:0003910 KO:K10777 GO:GO:0032807
GeneTree:ENSGT00700000104500 RefSeq:NP_498653.2
ProteinModelPortal:Q95YE6 SMR:Q95YE6 IntAct:Q95YE6 MINT:MINT-228244
STRING:Q95YE6 PaxDb:Q95YE6 EnsemblMetazoa:C07H6.1 GeneID:176067
KEGG:cel:CELE_C07H6.1 UCSC:C07H6.1 CTD:176067 WormBase:C07H6.1
HOGENOM:HOG000018802 InParanoid:Q95YE6 OMA:NGWFKLK NextBio:890968
Uniprot:Q95YE6
Length = 741
Score = 194 (73.4 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 73/285 (25%), Positives = 126/285 (44%)
Query: 434 PMLAKPTKGVSEIVN--KFQDMEFTCEYKYDGERAQIHYLEDGSVEIYSRNAERNTGKFP 491
PML + K N KF +F + K+DGE +H + ++RN + ++
Sbjct: 231 PMLLQKQKRGDWYANIEKFGGQKFFLQTKFDGENVLLHK-KGNEYRWFTRNNNDFSKEYG 289
Query: 492 DVVLAVSRLKKPSVRSF--------VLDCEIVAYDREKQKILPFQTLSTRARKNV-SLSD 542
D +A+ +L + SF + +CE++ +D++ +K+ ST + V S
Sbjct: 290 DSSMAIGKLSS-RIHSFFNKECESAIFNCELMLWDKKTKKLCRHNDASTTSDAQVLSFRH 348
Query: 543 IKVD----VCIYAFDILYRNGQPLLQEQLRVRREHLYDS---FEEEPGFFQFATTLTSID 595
+K D + + FD+LY NG+P L R E L + E E F A
Sbjct: 349 VKPDDNQQLTVVLFDLLYLNGKPFFGAPLHQRLEMLKIAPLKKEREDTIF-VAKHEEGSK 407
Query: 596 LDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLN--WLKLKKDYIESIGDSLDLVP 653
++IQ+F + A+ + EG+++K D + Y +RS + W KLK + LDL
Sbjct: 408 KEDIQQFFEIAMANNEEGIVVKRTD--SVYVKGQRSASNGWFKLKPSASKDC--DLDLAL 463
Query: 654 IAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLE 698
+A G G R G + A +D ++++ G S+ + E
Sbjct: 464 VAVHPGAG-RNGKT-LYRFAAFDEKTQDYKLCLSCSYGLSDTVRE 506
>UNIPROTKB|Q9KXZ8 [details] [associations]
symbol:Q9KXZ8 "Probable ATP-dependent DNA ligase"
species:100226 "Streptomyces coelicolor A3(2)" [GO:0003910 "DNA
ligase (ATP) activity" evidence=IBA] [GO:0005694 "chromosome"
evidence=IBA] [GO:0006266 "DNA ligation" evidence=IBA] [GO:0006273
"lagging strand elongation" evidence=IBA] [GO:0006289
"nucleotide-excision repair" evidence=IBA] InterPro:IPR012309
InterPro:IPR012310 Pfam:PF01068 Pfam:PF04679 PROSITE:PS50160
GO:GO:0005524 GO:GO:0005694 GO:GO:0006310 GenomeReviews:AL645882_GR
EMBL:AL939131 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0006289 GO:GO:0006273 GO:GO:0003910 KO:K01971
HOGENOM:HOG000222509 RefSeq:NP_631399.1 ProteinModelPortal:Q9KXZ8
GeneID:1102783 KEGG:sco:SCO7345 PATRIC:23744613 OMA:VCKRLDS
ProtClustDB:CLSK2303611 Uniprot:Q9KXZ8
Length = 326
Score = 184 (69.8 bits), Expect = 2.6e-11, P = 2.6e-11
Identities = 80/280 (28%), Positives = 129/280 (46%)
Query: 431 PIGPMLAKPTKGVSEIVNKFQDMEFTCEYKYDGERAQIHYLEDGSVEIYSRNAERNTGKF 490
PI PMLA P + QD + E K DG+R ++ DGSV + +R+ + T +
Sbjct: 5 PIPPMLATP----GTLPPAGQDTRWAYETKQDGQRVVVYLPGDGSVLLRARSGQDITAAY 60
Query: 491 PDVV-LAVSRLKKPSVRSFVLDCEIVAYDREKQKILPFQTLSTR---ARKNVSLSD--IK 544
P++ LA + P+V LD E++A D + + FQ L +R A + K
Sbjct: 61 PELAPLATALGGTPAV----LDGEVLALDEQGRA--DFQLLQSRMGLAHTPARAAHRAAK 114
Query: 545 VDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLD 604
V V + FD L+ G+ LL+ RRE L D P + +T ++ + + L
Sbjct: 115 VPVHLVLFDALHLAGRSLLRLPYTGRRERLTDLGLNGPSW----STPAAL-VGHGAQALR 169
Query: 605 AAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRT 664
A + EGL+ K +D + YEP RS W+K++ E D+V G+G+
Sbjct: 170 ATREHGLEGLVCKRLD--SVYEPGVRSRAWIKIRNMRSE------DVVVGGWLPGKGRLG 221
Query: 665 GVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSL 704
G+ GA L+ + + + +GTG+S E ++ L
Sbjct: 222 GLPGAVLVGQRAAGRLRY--VGGVGTGWSAGERTELAALL 259
>UNIPROTKB|A6V648 [details] [associations]
symbol:ligD "DNA ligase D" species:381754 "Pseudomonas
aeruginosa PA7" [GO:0003910 "DNA ligase (ATP) activity"
evidence=IBA] [GO:0005694 "chromosome" evidence=IBA] [GO:0006266
"DNA ligation" evidence=IBA] [GO:0006273 "lagging strand
elongation" evidence=IBA] [GO:0006289 "nucleotide-excision repair"
evidence=IBA] InterPro:IPR002755 InterPro:IPR012309
InterPro:IPR012310 Pfam:PF01068 Pfam:PF01896 Pfam:PF04679
PROSITE:PS50160 GO:GO:0005524 GO:GO:0005694 GO:GO:0006310
EMBL:CP000744 GenomeReviews:CP000744_GR Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006289 GO:GO:0003896
GO:GO:0006273 GO:GO:0003910 KO:K01971 eggNOG:COG3285
HOGENOM:HOG000222509 InterPro:IPR014146 InterPro:IPR014144
InterPro:IPR014145 Pfam:PF13298 TIGRFAMs:TIGR02777
TIGRFAMs:TIGR02778 TIGRFAMs:TIGR02779 InterPro:IPR014143
TIGRFAMs:TIGR02776 RefSeq:YP_001348533.1 ProteinModelPortal:A6V648
SMR:A6V648 STRING:A6V648 GeneID:5355140 KEGG:pap:PSPA7_3173
PATRIC:19828004 OMA:LVAECEF ProtClustDB:PRK05972
BioCyc:PAER381754:GHMY-3215-MONOMER Uniprot:A6V648
Length = 847
Score = 174 (66.3 bits), Expect = 2.4e-09, P = 2.4e-09
Identities = 83/292 (28%), Positives = 127/292 (43%)
Query: 454 EFTCEYKYDGERAQIHYLEDGSVEIYSRNAERNTGKFPDVVLAVSRLKKPSVRSFVLDCE 513
++ E K DG R +EDG V + +RN + + P + A++ L RS+ LD E
Sbjct: 237 QWAYELKLDGYRLMSR-IEDGHVRLLTRNGHDWSERLPHLKKALAGLGLE--RSW-LDGE 292
Query: 514 IVAYDREKQKILPFQTLSTRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQ---EQLRVR 570
+V D E + FQ L +N ++ + FD+ Y G+ L E+ R R
Sbjct: 293 LVVLDEEGRP--DFQAL-----QNAFEEGHGENILYFLFDLPYHEGEDLRDVALEERRAR 345
Query: 571 REHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKR 630
E L D +E+P +F+ TL D L +A EG+I K + + Y S+R
Sbjct: 346 LEALLDGQDEDP--LRFSATLAENPRD----LLASACRLGLEGVIGKRLG--SVYR-SRR 396
Query: 631 SLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEE-FQSICKIG 689
S +W+KLK + + V + +G R + GA LL Y + E + K+G
Sbjct: 397 SNDWIKLKCQLRQ------EFVIVGYTEPKGSRRHI-GALLLGLYSPDEERRLRYAGKVG 449
Query: 690 TGFSEAMLE---ERSSSLRSKVIPKPR-PYYRFADTISPDVWFEPTERPETS 737
TGF+ A L+ ER + L P + P R + W P E S
Sbjct: 450 TGFTAASLKKVHERLAPLAINSSPLAKVPPARETGVVQ---WVRPERLCEVS 498
>UNIPROTKB|Q0C1L5 [details] [associations]
symbol:HNE_1670 "Putative DNA ligase, ATP-dependent"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0003910 "DNA
ligase (ATP) activity" evidence=ISS] InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 PROSITE:PS00697
PROSITE:PS50160 GO:GO:0005524 GO:GO:0003677 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 EMBL:CP000158
GenomeReviews:CP000158_GR eggNOG:COG1793 GO:GO:0003910
GO:GO:0051103 SUPFAM:SSF117018 KO:K01971 RefSeq:YP_760378.1
ProteinModelPortal:Q0C1L5 STRING:Q0C1L5 GeneID:4289140
KEGG:hne:HNE_1670 PATRIC:32216163 HOGENOM:HOG000036007 OMA:AYDLLEW
BioCyc:HNEP228405:GI69-1702-MONOMER InterPro:IPR026333
TIGRFAMs:TIGR04120 Uniprot:Q0C1L5
Length = 532
Score = 171 (65.3 bits), Expect = 5.7e-09, Sum P(2) = 5.7e-09
Identities = 70/280 (25%), Positives = 117/280 (41%)
Query: 454 EFTCEYKYDGERAQIHYLEDGSVEIYSRNAERNTGKFPDVVLAVSRLKKPSVRSFVLDCE 513
+F E+K+DG R Q+ G V +YSR E TG FP+ A L K S +D E
Sbjct: 220 DFAAEWKWDGIRVQLARAA-GEVRLYSRGGEDITGAFPEFADA---LPKGSA----VDGE 271
Query: 514 I-VAYDREKQKILPFQTLSTR-ARKNVSLSDIKVDVC-IYAFDILYRNGQPLLQEQLRVR 570
+ VA + ++ PF L R RK S ++ I +D+L G+ L R
Sbjct: 272 LLVADEAAPYRVAPFSELQKRLGRKAPPRSLLEASPAFIRLYDLLEHEGEDLRPLSWTER 331
Query: 571 REHLYDSFEEEPGF-FQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSK 629
R L + P F + + D+ +++ + EG+++K R + Y +
Sbjct: 332 RARLQEFAATLPADRFDLSPVIDVADVGVLEQLRREPPAPAIEGVMLKR--RASPYTAGR 389
Query: 630 RSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIG 689
S W K K+D + D V + A G GKR+ Y + C+ + + + K
Sbjct: 390 ISGLWYKWKRD-----PHTADCVMMYAQRGSGKRSSFYSDYTFGCWTEDGQ-LVPVGKAY 443
Query: 690 TGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFE 729
+GF++ L +R + + P + +V F+
Sbjct: 444 SGFTDEELVRLDKFVRGNITARFGPVLEVRKELVLEVAFD 483
Score = 43 (20.2 bits), Expect = 5.7e-09, Sum P(2) = 5.7e-09
Identities = 19/70 (27%), Positives = 31/70 (44%)
Query: 324 QEKKKNRIKALLVAATD---CEPQY-LIRLLQSKLRIGLAEQTLLAALGQA-----AVYN 374
Q +K LL D E ++ L++L+ RIG++E+ A +A A
Sbjct: 111 QNARKGDAPGLLARWLDRSTAEERFALLKLVLGNFRIGVSERLAKTAFAEAFGVSLADVE 170
Query: 375 EQ-HSKPPPN 383
E H+ P P+
Sbjct: 171 EYWHASPAPH 180
>UNIPROTKB|Q89VA3 [details] [associations]
symbol:bll1144 "Bll1144 protein" species:224911
"Bradyrhizobium japonicum USDA 110" [GO:0003910 "DNA ligase (ATP)
activity" evidence=IBA] [GO:0005694 "chromosome" evidence=IBA]
[GO:0006266 "DNA ligation" evidence=IBA] [GO:0006273 "lagging
strand elongation" evidence=IBA] [GO:0006289 "nucleotide-excision
repair" evidence=IBA] InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF01068 Pfam:PF04679 PROSITE:PS00697
PROSITE:PS50160 GO:GO:0005524 GO:GO:0005694 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006289
GO:GO:0006273 GO:GO:0003910 GO:GO:0051103 KO:K01971 EMBL:BA000040
GenomeReviews:BA000040_GR HOGENOM:HOG000036007 InterPro:IPR026333
TIGRFAMs:TIGR04120 RefSeq:NP_767784.1 ProteinModelPortal:Q89VA3
GeneID:1049800 KEGG:bja:bll1144 PATRIC:21185828 OMA:KHAKPAL
ProtClustDB:PRK09247 BioCyc:BJAP224911:GJEJ-1154-MONOMER
Uniprot:Q89VA3
Length = 625
Score = 152 (58.6 bits), Expect = 7.9e-08, Sum P(2) = 7.9e-08
Identities = 79/279 (28%), Positives = 121/279 (43%)
Query: 454 EFTCEYKYDGERAQ-IHYLED-GSV--EIYSRNAERNTGKFPDVVLAVSRLKKPSVRSFV 509
++ E+K+DG R Q + +D G V +YSR E TG FPD+V + L+ P
Sbjct: 296 DYIAEWKWDGIRVQAVAGRDDRGHVTARLYSRTGEDITGSFPDLVPS---LRLPGA---- 348
Query: 510 LDCEIVAYDREKQKILPFQTLSTRA-RKNVSLSDIK-VDVCIYAFDILYRNGQPLLQEQL 567
+D E++ RE ++ F L R RK VS IK + + A+D+L + L +
Sbjct: 349 IDGELLIL-REG-RVQSFNVLQQRLNRKAVSPKLIKEFPIHLRAYDLLGDDENDLRELPF 406
Query: 568 RVRREHLYDSFEEEPG--------FFQFAT--TLTSIDLDEIQKFLDAAVDASCEGLIIK 617
RRE L ++F + G FA+ LT+ D DA EG+++K
Sbjct: 407 TERRERL-ETFITKLGDPRIDLSPIVPFASWEALTAARADPASAGAGEDADA-VEGVMLK 464
Query: 618 TMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDS 677
RDA Y P + W K K+D +D V + A G GKR+ Y + +
Sbjct: 465 R--RDAPYLPGRPKGQWWKWKRD-----PHIIDAVLMYAQRGHGKRSSYYSDYTFGVWTE 517
Query: 678 NN--EEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRP 714
+E + K GF++ L + +R K P
Sbjct: 518 GETGDELVPVGKAYFGFTDEELLQIDRFVRRNTTEKFGP 556
Score = 54 (24.1 bits), Expect = 7.9e-08, Sum P(2) = 7.9e-08
Identities = 23/72 (31%), Positives = 34/72 (47%)
Query: 300 PDPLTITKVFDTFRLIAKEAGKDSQEKKKNRIKALLVAATDCEPQYLIRLLQSKLRIGLA 359
P P T+T+V T R + GK K+ R L + L++L+ LRIG++
Sbjct: 171 PPPPTLTEVVTTLRTL----GKTELPKQLER---WLDELDETGRWALLKLVTGALRIGIS 223
Query: 360 EQ---TLLAALG 368
+ T AALG
Sbjct: 224 ARLAKTAAAALG 235
Score = 39 (18.8 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 19/70 (27%), Positives = 28/70 (40%)
Query: 371 AVYNEQHSKPPPNIQSPLEEAAKIVKQVFSV-LPVY-EKIVPALLTDGVWNLSNTCSFTP 428
A++ H+ PPP L E ++ + LP E+ + L G W L +
Sbjct: 162 ALHPSNHNNPPP---PTLTEVVTTLRTLGKTELPKQLERWLDELDETGRWALLKLVTGAL 218
Query: 429 GIPIGPMLAK 438
I I LAK
Sbjct: 219 RIGISARLAK 228
>UNIPROTKB|Q89JT7 [details] [associations]
symbol:blr5182 "Blr5182 protein" species:224911
"Bradyrhizobium japonicum USDA 110" [GO:0003910 "DNA ligase (ATP)
activity" evidence=IBA] [GO:0005694 "chromosome" evidence=IBA]
[GO:0006266 "DNA ligation" evidence=IBA] [GO:0006273 "lagging
strand elongation" evidence=IBA] [GO:0006289 "nucleotide-excision
repair" evidence=IBA] InterPro:IPR012310 Pfam:PF01068
PROSITE:PS50160 GO:GO:0005524 GO:GO:0005694 GO:GO:0006310
GO:GO:0006289 GO:GO:0006273 GO:GO:0003910 KO:K01971 EMBL:BA000040
GenomeReviews:BA000040_GR HOGENOM:HOG000147589
ProtClustDB:CLSK253886 RefSeq:NP_771822.1 ProteinModelPortal:Q89JT7
GeneID:1051538 KEGG:bja:blr5182 PATRIC:21194028 OMA:DAWIHEV
BioCyc:BJAP224911:GJEJ-5220-MONOMER Uniprot:Q89JT7
Length = 210
Score = 134 (52.2 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 53/183 (28%), Positives = 85/183 (46%)
Query: 458 EYKYDGERAQIHYLEDGSVEIYSRNAERNTGKFPDVVLAVSRLKKPSVRSFVLDCEIVAY 517
E KYDG R ++ + +V +++RN T +FP +V A + ++ + FV+D E V
Sbjct: 39 EIKYDGYRLRVER-QGKTVRLFTRNGHDWTKRFPWIVEAALKNRE---QHFVIDGEAVVL 94
Query: 518 DREKQKILPFQTLSTRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDS 577
+ + F L +R N +V +YAFD+L G+ L + L +R+ +L
Sbjct: 95 GVDG--VSDFDALHSRRHDN--------EVQLYAFDVLALGGEDLRELPLSLRKTNLARL 144
Query: 578 FEEEP-GFFQFATTLTSIDLDEI-QKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWL 635
P G F + + EI + AA EGL+ K DR Y RS +W+
Sbjct: 145 LRGRPDGMF-----VAPFEPGEIGTELFGAACRLGLEGLVSKRRDR--RYSAG-RSKDWV 196
Query: 636 KLK 638
K+K
Sbjct: 197 KVK 199
>TIGR_CMR|CBU_1934 [details] [associations]
symbol:CBU_1934 "DNA ligase, ATP-dependent" species:227377
"Coxiella burnetii RSA 493" [GO:0003910 "DNA ligase (ATP) activity"
evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0006281 "DNA repair" evidence=ISS] [GO:0006310 "DNA
recombination" evidence=ISS] InterPro:IPR002755 InterPro:IPR012309
InterPro:IPR012310 Pfam:PF01068 Pfam:PF01896 Pfam:PF04679
PROSITE:PS50160 GO:GO:0005524 GO:GO:0006281 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0006310 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0003896 GO:GO:0003910
KO:K01971 HOGENOM:HOG000222509 InterPro:IPR014146
InterPro:IPR014144 InterPro:IPR014145 Pfam:PF13298
TIGRFAMs:TIGR02777 TIGRFAMs:TIGR02778 TIGRFAMs:TIGR02779
InterPro:IPR014143 TIGRFAMs:TIGR02776 OMA:LVAECEF
RefSeq:NP_820911.2 PRIDE:Q83AG5 GeneID:1209847 KEGG:cbu:CBU_1934
PATRIC:17932597 ProtClustDB:CLSK915136
BioCyc:CBUR227377:GJ7S-1908-MONOMER Uniprot:Q83AG5
Length = 815
Score = 127 (49.8 bits), Expect = 0.00028, P = 0.00028
Identities = 54/184 (29%), Positives = 88/184 (47%)
Query: 458 EYKYDGERAQIHYLEDGSVEIYSRNAERNTGKFPDVVLAVSRLKKPSVRSFVLDCEIVAY 517
E K+DG R I ++ G +++ +RN + T K + +K + +LD EIV +
Sbjct: 228 EIKFDGYRI-ICIIKKGIIQLMTRNQKNWTEKLAGLA---ETMKSIPIDESILDGEIVVF 283
Query: 518 DREKQKILPFQTLSTRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRR---EHL 574
D E K FQ L A K ++IK Y FDI + L Q L +R+ + L
Sbjct: 284 D-ESGKT-DFQLLQN-AIKAKKYNEIKY----YLFDIPFCQKFDLSQVPLIMRKRLLKKL 336
Query: 575 YDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNW 634
++E+ G +++ + + L+ A + EG+I K +D A YE +RS +W
Sbjct: 337 ILQWKEKSGSILYSSHIKGNG----KAILERACELGLEGIISKKID--AAYE-QRRSSSW 389
Query: 635 LKLK 638
+KLK
Sbjct: 390 IKLK 393
>UNIPROTKB|A8JIN2 [details] [associations]
symbol:DNL4 "DNA ligase IV" species:3055 "Chlamydomonas
reinhardtii" [GO:0003910 "DNA ligase (ATP) activity" evidence=IBA]
[GO:0005694 "chromosome" evidence=IBA] [GO:0006266 "DNA ligation"
evidence=IBA] [GO:0006273 "lagging strand elongation" evidence=IBA]
[GO:0006289 "nucleotide-excision repair" evidence=IBA] [GO:0006303
"double-strand break repair via nonhomologous end joining"
evidence=IBA] [GO:0032807 "DNA ligase IV complex" evidence=IBA]
InterPro:IPR012308 InterPro:IPR012310 Pfam:PF01068 Pfam:PF04675
PROSITE:PS50160 GO:GO:0005524 GO:GO:0005694 GO:GO:0003677
GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0006303 GO:GO:0006289 GO:GO:0006273 eggNOG:COG1793
GO:GO:0003910 GO:GO:0032807 EMBL:DS496207 RefSeq:XP_001690680.1
EnsemblPlants:EDO96255 GeneID:5716282 KEGG:cre:CHLREDRAFT_205955
BioCyc:CHLAMY:CHLREDRAFT_205955-MONOMER Uniprot:A8JIN2
Length = 831
Score = 127 (49.8 bits), Expect = 0.00040, Sum P(2) = 0.00040
Identities = 68/247 (27%), Positives = 113/247 (45%)
Query: 427 TPGIPIGPMLAK--PTKGVSEIVNKFQDMEFTCEYKYDGERAQIHYL-EDGS-------- 475
TPG+ + P LA P G+ E+V + F + K+DG R Q GS
Sbjct: 148 TPGLCVSPQLAAKPPPGGLEEVVRRHSGRPFRVDTKFDGWRIQPAAAGAAGSAAGAAGAA 207
Query: 476 ----VEIYSRNAERNTGKFPDVVLAVSRLKKPSVRSFVLDCEIVAYDREKQKILPFQTLS 531
V YSR R P V P V VLD E++ ++++++ PF L+
Sbjct: 208 PAPVVHYYSR---RFLDHGPRSGFNVLDGAPPQV---VLDGEMLVWNKDRRAWEPFGCLA 261
Query: 532 TR---ARKNVSLSD-IK--VDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGF- 584
A + + +K ++V +DILY + L L+ R+E L + PG
Sbjct: 262 AAVHAAAAGWAPEELVKGWLEVVYVVYDILYCSDTSTLHMPLQERQELLAQALM--PGRP 319
Query: 585 FQFATTLTS---IDLDEIQKFLDAAV-DASCEGLIIKTMDRDATYEPSKRSLNWLKLKKD 640
Q L S +++++++ D + EG++IK++ A Y P+ RS +W+KLK D
Sbjct: 320 LQQDGRLHSWLCSNVEQLRRLHDQQTREQREEGVVIKSLT--APYRPAARSESWVKLKPD 377
Query: 641 YIESIGD 647
Y+ ++G+
Sbjct: 378 YL-TLGE 383
Score = 47 (21.6 bits), Expect = 0.00040, Sum P(2) = 0.00040
Identities = 13/42 (30%), Positives = 26/42 (61%)
Query: 331 IKALLVAATDCEPQYLIR-LLQSKLRIGLAEQTLLAALGQAA 371
++ LL T ++L+ LL+ ++ +GL+E++LL L + A
Sbjct: 80 LRWLLRRCTPAAGRWLLCVLLRGEMPVGLSERSLLGCLHRDA 121
>UNIPROTKB|Q89FC8 [details] [associations]
symbol:bll6773 "Bll6773 protein" species:224911
"Bradyrhizobium japonicum USDA 110" [GO:0003910 "DNA ligase (ATP)
activity" evidence=IBA] [GO:0005694 "chromosome" evidence=IBA]
[GO:0006266 "DNA ligation" evidence=IBA] [GO:0006273 "lagging
strand elongation" evidence=IBA] [GO:0006289 "nucleotide-excision
repair" evidence=IBA] InterPro:IPR012309 InterPro:IPR012310
Pfam:PF01068 Pfam:PF04679 PROSITE:PS50160 GO:GO:0005524
GO:GO:0005694 GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0006289 GO:GO:0006273 GO:GO:0003910 KO:K01971
EMBL:BA000040 GenomeReviews:BA000040_GR HOGENOM:HOG000222509
InterPro:IPR014146 InterPro:IPR014144 InterPro:IPR014145
Pfam:PF13298 TIGRFAMs:TIGR02777 TIGRFAMs:TIGR02778
TIGRFAMs:TIGR02779 InterPro:IPR014143 TIGRFAMs:TIGR02776
OMA:LVAECEF ProtClustDB:PRK05972 RefSeq:NP_773413.1
ProteinModelPortal:Q89FC8 GeneID:1050858 KEGG:bja:bll6773
PATRIC:21197414 BioCyc:BJAP224911:GJEJ-6824-MONOMER Uniprot:Q89FC8
Length = 892
Score = 125 (49.1 bits), Expect = 0.00051, P = 0.00051
Identities = 52/186 (27%), Positives = 86/186 (46%)
Query: 458 EYKYDGERAQIHYLEDGSVEIYSRNAERNTGKFPDVVLAVSRLKKPSVRSFVLDCEIVAY 517
E K+DG R Q+ +EDG + +R T KF + + L P ++D EIVA
Sbjct: 282 EIKFDGYRVQLR-IEDGKATLKTRKGLDWTDKFASIAKEANSL--PEA---MIDGEIVAL 335
Query: 518 DREKQKILPFQTLSTRARKNVSLSDIKV-DVCIYAFDILYRNGQPLLQEQLRVRREHLYD 576
D F +L +LSD K D+ +AFD+L+ G+ + LR R+ L +
Sbjct: 336 DHNGAP--NFSSLQA------ALSDGKTEDLIFFAFDLLFAEGRDYRRLPLRERKSRLKE 387
Query: 577 SFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASC----EGLIIKTMDRDATYEPSKRSL 632
E + + + + ++ + DA + ++C EG++ K +D A Y S R+
Sbjct: 388 LLEAQK---RKSNQIRYVE--HFESGGDAVLQSACKLELEGVVSKKLD--APYR-SGRTE 439
Query: 633 NWLKLK 638
+W K K
Sbjct: 440 SWTKAK 445
>UNIPROTKB|Q89CU1 [details] [associations]
symbol:bll7704 "Bll7704 protein" species:224911
"Bradyrhizobium japonicum USDA 110" [GO:0003910 "DNA ligase (ATP)
activity" evidence=IBA] [GO:0005694 "chromosome" evidence=IBA]
[GO:0006266 "DNA ligation" evidence=IBA] [GO:0006273 "lagging
strand elongation" evidence=IBA] [GO:0006289 "nucleotide-excision
repair" evidence=IBA] InterPro:IPR012310 Pfam:PF01068 GO:GO:0005524
GO:GO:0005694 GO:GO:0006310 GO:GO:0006289 GO:GO:0006273
GO:GO:0003910 EMBL:BA000040 GenomeReviews:BA000040_GR
RefSeq:NP_774344.1 ProteinModelPortal:Q89CU1 GeneID:1047841
KEGG:bja:bll7704 PATRIC:21199394 HOGENOM:HOG000147589
ProtClustDB:CLSK253886 BioCyc:BJAP224911:GJEJ-7759-MONOMER
Uniprot:Q89CU1
Length = 195
Score = 112 (44.5 bits), Expect = 0.00075, P = 0.00075
Identities = 51/182 (28%), Positives = 80/182 (43%)
Query: 458 EYKYDGERAQIHYLEDGSVEIYSRNAERNTGKFPDVVLAVSRLKKPSVRSFVLDCEIVAY 517
E KYDG R ++ E V + +R ++P +V A ++++ + FVLD E V
Sbjct: 24 EVKYDGYRLRLER-EGHRVRLITRGGYNWASRYPWIVEAARKVRQ---KHFVLDGEAVVL 79
Query: 518 DREKQKILPFQTLSTRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDS 577
+ I F L +R R D +V C AFDIL G + L +R+ +L
Sbjct: 80 GVDG--ISDFNALHSRKR------DHEVQFC--AFDILAEGGDDHRRLSLSMRKTNLERL 129
Query: 578 FEEEP-GFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLK 636
P G F + D + AA + EGL+ K D+ + + RS +W+K
Sbjct: 130 LARRPEGVFVNPFERGQLGPDLFR----AACNMGLEGLVSKRRDQP---DQAGRSKHWVK 182
Query: 637 LK 638
+K
Sbjct: 183 VK 184
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.133 0.381 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 768 732 0.00087 121 3 11 22 0.41 34
37 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 95
No. of states in DFA: 616 (65 KB)
Total size of DFA: 350 KB (2176 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 72.57u 0.12s 72.69t Elapsed: 00:00:03
Total cpu time: 72.60u 0.12s 72.72t Elapsed: 00:00:03
Start: Sat May 11 12:18:40 2013 End: Sat May 11 12:18:43 2013