Query 004212
Match_columns 768
No_of_seqs 340 out of 1927
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 17:50:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004212.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004212hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1x9n_A DNA ligase I; 5'-adenyl 100.0 2E-117 7E-122 1040.4 59.4 586 164-749 29-626 (688)
2 2hiv_A Thermostable DNA ligase 100.0 4E-108 1E-112 954.7 56.7 540 184-748 14-563 (621)
3 3gde_A DNA ligase; DNA-binding 100.0 3E-105 9E-110 919.5 49.7 511 189-748 2-517 (558)
4 2cfm_A Thermostable DNA ligase 100.0 9E-104 3E-108 909.3 49.8 513 191-748 1-517 (561)
5 3l2p_A DNA ligase 3; DNA ligas 100.0 5E-101 2E-105 886.7 46.8 524 189-761 5-552 (579)
6 1vs0_A Putative DNA ligase-lik 100.0 7E-61 2.4E-65 515.7 25.2 283 426-744 3-287 (310)
7 1a0i_A DNA ligase; DNA replica 100.0 1.8E-55 6E-60 480.5 21.5 293 423-743 2-335 (348)
8 1fvi_A Chlorella virus DNA lig 100.0 1.6E-46 5.6E-51 401.7 23.9 246 431-744 2-280 (297)
9 4htp_A DNA ligase 4; helical d 100.0 5.1E-36 1.7E-40 311.4 15.2 206 188-420 11-235 (240)
10 1p16_A GTP--RNA, mRNA capping 100.0 3.1E-33 1.1E-37 309.9 15.8 219 450-704 57-316 (395)
11 3vnn_A DNA ligase 4; non-homol 100.0 2.3E-30 7.8E-35 247.9 7.8 132 455-590 1-138 (139)
12 1ckm_A MRNA capping enzyme; nu 100.0 3.6E-29 1.2E-33 271.3 14.8 188 451-689 73-271 (330)
13 3kyh_C MRNA-capping enzyme sub 99.9 1.2E-24 4E-29 243.0 13.7 175 448-655 60-264 (461)
14 3rtx_A MRNA-capping enzyme; gu 99.9 1.3E-24 4.4E-29 236.2 11.0 167 452-653 62-247 (343)
15 2vug_A PAB1020; RNA, ligase, A 99.5 1.6E-13 5.5E-18 151.5 17.0 223 452-708 94-348 (389)
16 3qwu_A DNA ligase; structural 99.4 1.4E-12 4.8E-17 141.8 13.6 144 452-619 72-221 (370)
17 1ta8_A DNA ligase, NAD-depende 98.2 1.9E-06 6.6E-11 93.0 7.7 169 454-640 114-319 (332)
18 1b04_A Protein (DNA ligase); D 98.2 2.4E-06 8E-11 91.8 7.6 169 453-639 107-312 (318)
19 1s68_A RNA ligase 2; ribonucle 98.1 1.9E-05 6.4E-10 82.3 13.8 108 450-577 25-145 (249)
20 2hvq_A ORF1, hypothetical 37.6 98.1 1.9E-05 6.3E-10 85.7 13.1 108 450-577 26-146 (335)
21 1zau_A DNA ligase; AMP; HET: D 97.8 3.4E-06 1.2E-10 90.9 1.1 165 453-634 116-319 (328)
22 4glw_A DNA ligase; inhibitor, 97.7 8.6E-05 2.9E-09 79.5 10.1 151 451-619 100-280 (305)
23 4glx_A DNA ligase; inhibitor, 97.7 0.00011 3.9E-09 84.8 11.8 220 453-701 108-368 (586)
24 1xk5_A Snurportin-1; protein-R 97.6 0.0004 1.4E-08 70.0 11.4 170 433-640 5-184 (204)
25 3jsl_A DNA ligase; NAD+-depend 97.5 0.00016 5.5E-09 77.6 8.0 169 453-639 105-310 (318)
26 2owo_A DNA ligase; protein-DNA 97.5 0.0007 2.4E-08 79.4 13.7 218 454-701 109-368 (671)
27 3uq8_A DNA ligase; adenylated 97.3 0.0003 1E-08 75.7 7.1 171 453-639 107-316 (322)
28 1xdn_A RNA editing ligase MP52 97.2 0.002 6.8E-08 67.4 11.9 180 451-641 31-265 (277)
29 1dgs_A DNA ligase; AMP complex 97.0 0.0014 4.7E-08 76.8 9.8 216 454-701 110-366 (667)
30 4e6n_A Metallophosphoesterase; 96.9 0.0059 2E-07 66.2 12.5 166 453-619 81-333 (427)
31 3gjx_B Snurportin-1; transport 96.9 0.0034 1.2E-07 67.7 10.3 168 433-642 106-286 (365)
32 2c5u_A RNA ligase, T4 RNA liga 96.9 0.0068 2.3E-07 66.6 13.0 141 453-641 93-246 (375)
33 3sgi_A DNA ligase; HET: DNA AM 96.8 0.00078 2.7E-08 78.1 5.1 197 454-670 117-350 (615)
34 3gde_A DNA ligase; DNA-binding 94.8 0.097 3.3E-06 60.3 10.7 91 189-289 113-206 (558)
35 2hiv_A Thermostable DNA ligase 93.6 0.12 4E-06 60.4 8.2 93 301-413 19-119 (621)
36 2cfm_A Thermostable DNA ligase 93.2 0.24 8.3E-06 57.0 10.0 91 189-289 109-202 (561)
37 1x9n_A DNA ligase I; 5'-adenyl 90.9 0.43 1.5E-05 56.3 8.4 92 300-411 53-154 (688)
38 4htp_A DNA ligase 4; helical d 89.4 0.84 2.9E-05 46.9 8.2 86 189-291 141-229 (240)
39 3l2p_A DNA ligase 3; DNA ligas 72.2 5.5 0.00019 46.0 7.1 84 189-289 116-199 (579)
40 3b4u_A Dihydrodipicolinate syn 45.3 32 0.0011 35.9 6.6 57 563-619 51-107 (294)
41 3l21_A DHDPS, dihydrodipicolin 45.0 40 0.0014 35.4 7.4 57 563-619 63-119 (304)
42 3m5v_A DHDPS, dihydrodipicolin 44.7 49 0.0017 34.6 7.9 57 563-619 55-112 (301)
43 1f6k_A N-acetylneuraminate lya 44.7 43 0.0015 34.9 7.5 57 563-619 52-108 (293)
44 2ehh_A DHDPS, dihydrodipicolin 44.1 49 0.0017 34.5 7.8 57 563-619 48-104 (294)
45 3cpr_A Dihydrodipicolinate syn 44.0 52 0.0018 34.5 8.0 57 563-619 64-120 (304)
46 3flu_A DHDPS, dihydrodipicolin 43.7 41 0.0014 35.1 7.2 61 558-619 51-111 (297)
47 3qze_A DHDPS, dihydrodipicolin 43.6 41 0.0014 35.5 7.2 57 563-619 71-127 (314)
48 3daq_A DHDPS, dihydrodipicolin 43.0 42 0.0014 35.0 7.0 57 563-619 50-106 (292)
49 3tak_A DHDPS, dihydrodipicolin 42.6 41 0.0014 35.0 7.0 57 563-619 49-105 (291)
50 3s5o_A 4-hydroxy-2-oxoglutarat 41.8 38 0.0013 35.6 6.5 57 563-619 62-118 (307)
51 2wkj_A N-acetylneuraminate lya 40.9 51 0.0017 34.6 7.3 57 563-619 59-115 (303)
52 3a5f_A Dihydrodipicolinate syn 40.6 50 0.0017 34.4 7.2 57 563-619 49-105 (291)
53 1o5k_A DHDPS, dihydrodipicolin 40.5 47 0.0016 34.9 7.0 57 563-619 60-116 (306)
54 1xky_A Dihydrodipicolinate syn 40.1 51 0.0017 34.5 7.2 57 563-619 60-116 (301)
55 3na8_A Putative dihydrodipicol 39.7 40 0.0014 35.6 6.3 57 563-619 72-128 (315)
56 3eb2_A Putative dihydrodipicol 39.5 40 0.0014 35.3 6.3 57 563-619 52-108 (300)
57 2yxg_A DHDPS, dihydrodipicolin 39.1 47 0.0016 34.5 6.7 57 563-619 48-104 (289)
58 3si9_A DHDPS, dihydrodipicolin 39.1 45 0.0015 35.3 6.6 57 563-619 70-126 (315)
59 2vc6_A MOSA, dihydrodipicolina 37.9 48 0.0017 34.4 6.6 65 555-619 38-104 (292)
60 3h5d_A DHDPS, dihydrodipicolin 37.2 67 0.0023 33.8 7.6 57 563-619 55-112 (311)
61 3dz1_A Dihydrodipicolinate syn 37.1 42 0.0014 35.4 6.0 56 563-619 56-111 (313)
62 2ojp_A DHDPS, dihydrodipicolin 36.6 46 0.0016 34.6 6.1 57 563-619 49-105 (292)
63 3fkr_A L-2-keto-3-deoxyarabona 36.1 35 0.0012 35.9 5.2 57 563-619 56-112 (309)
64 3qfe_A Putative dihydrodipicol 36.0 41 0.0014 35.6 5.7 57 563-619 59-115 (318)
65 2r8w_A AGR_C_1641P; APC7498, d 34.3 61 0.0021 34.5 6.8 57 563-619 82-138 (332)
66 4dpp_A DHDPS 2, dihydrodipicol 34.1 45 0.0015 36.1 5.7 57 563-619 107-163 (360)
67 3e96_A Dihydrodipicolinate syn 33.9 60 0.0021 34.2 6.6 65 554-619 49-115 (316)
68 3d0c_A Dihydrodipicolinate syn 33.8 65 0.0022 33.9 6.8 56 563-619 60-115 (314)
69 2v9d_A YAGE; dihydrodipicolini 33.7 52 0.0018 35.2 6.1 57 563-619 79-135 (343)
70 2rfg_A Dihydrodipicolinate syn 31.6 48 0.0016 34.6 5.3 57 563-619 48-104 (297)
71 2nuw_A 2-keto-3-deoxygluconate 27.2 1.2E+02 0.0042 31.3 7.5 54 563-619 47-100 (288)
72 2r91_A 2-keto-3-deoxy-(6-phosp 27.1 1.2E+02 0.004 31.4 7.3 54 563-619 46-99 (286)
73 1w3i_A EDA, 2-keto-3-deoxy glu 23.3 2E+02 0.0067 29.8 8.2 54 563-619 47-100 (293)
No 1
>1x9n_A DNA ligase I; 5'-adenylated nicked DNA, protein-DNA complex, L complex; HET: DNA DOC AMP; 3.00A {Homo sapiens} SCOP: a.235.1.1 b.40.4.6 d.142.2.1
Probab=100.00 E-value=2.2e-117 Score=1040.35 Aligned_cols=586 Identities=47% Similarity=0.830 Sum_probs=536.0
Q ss_pred hhhhhhcccCCCCCCCcccccccCCCccchHHHHHHHHHHHhhhchHHHHHHHHHHHHhhhcCCCCchHHHHHHHhCccC
Q 004212 164 KSNIVLLKKKAGEFDPKMVACWEKGERVPFIFLSLVFDMISNETGRILITDIVCNMLRTVMETTPEDLVPVVYLAANKIA 243 (768)
Q Consensus 164 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~F~~la~l~e~I~~tssr~~k~~iL~~~fr~~i~~~p~dl~~~vyl~~~~l~ 243 (768)
+..+.....+...|+|..++||..|++|+|+.||++|++|++|++|++|+++|++||+.+++.+|+|++++|||++|+|+
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~i~~t~~r~~k~~~l~~~~~~~~~~~~~dl~~~v~ll~g~l~ 108 (688)
T 1x9n_A 29 PLDPSGYNPAKNNYHPVEDACWKPGQKVPYLAVARTFEKIEEVSARLRMVETLSNLLRSVVALSPPDLLPVLYLSLNHLG 108 (688)
T ss_dssp --CGGGCCTTCSSCCHHHHCCSCTTSCCBHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHTCSS
T ss_pred cccccccccCcccCCccccccccCCCCccHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhcCChHHHHHHHHHHcCCCC
Confidence 34456677888899999999999999999999999999999999999999999999999888899999999999999999
Q ss_pred CCccccccCCCHHHHHHHHHHHhCCCHHHHHHHHhhhCChHHHHhhhcccCCccCCCCCCcHHHHHHHHHHHHHHhCCCh
Q 004212 244 PAHEGLELGIGDASIIKALAEACGRTESHVKKQYQEMGDLGLVAKASRSSQSMMRKPDPLTITKVFDTFRLIAKEAGKDS 323 (768)
Q Consensus 244 P~~e~~elGIg~~~L~Kal~~a~G~s~~~ik~~y~~~GDlg~vA~~~r~~q~~l~~~~~LTI~eV~~~L~kIA~~~G~~S 323 (768)
|+|++++||||+++|+|++++++|++.+.+++.|+++||||+||+++++.|++++.+++|||.+|++.|++||..+|++|
T Consensus 109 P~~~~~elgi~~~~L~k~i~~~~g~~~~~~~~~~~~~GDlg~va~~~~~~~~~~~~~~~lTv~~V~~~L~~ia~~~g~~s 188 (688)
T 1x9n_A 109 PPQQGLELGVGDGVLLKAVAQATGRQLESVRAEAAEKGDVGLVAENSRSTQRLMLPPPPLTASGVFSKFRDIARLTGSAS 188 (688)
T ss_dssp CGGGCCCCCCCHHHHHHHHHHHHTCCHHHHHHHHHHHTCHHHHTCC--------CCCSCCBHHHHHHHHHHHHHCCSTTH
T ss_pred ccccccccCcChHHHHHHHHHHHCcCHHHHHHHHHhcCCHHHHHHHHHhcccccCCCCCCcHHHHHHHHHHHHhhcCcch
Confidence 99999999999999999999999999999999999999999999999888888877889999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHhhcccCcccHHHHHHHHHhhhccCCCCCC------------CCCCCcchHHHH
Q 004212 324 QEKKKNRIKALLVAATDCEPQYLIRLLQSKLRIGLAEQTLLAALGQAAVYNEQHSK------------PPPNIQSPLEEA 391 (768)
Q Consensus 324 q~~K~~~l~~Ll~~~t~~E~k~lvRiIlkdLRiGi~e~tVl~ala~a~~~~~~~~~------------~~~~l~~~l~~a 391 (768)
+++|+.+|..||.+|++.|++||+|+|+++||||+++++|++|||+||.+++.+.. .+..+++.++++
T Consensus 189 ~~~k~~~l~~ll~~~~~~E~k~l~Rli~~~lRiG~~~~~vl~ala~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (688)
T 1x9n_A 189 TAKKIDIIKGLFVACRHSEARFIARSLSGRLRLGLAEQSVLAALSQAVSLTPPGQEFPPAMVDAGKGKTAEARKTWLEEQ 268 (688)
T ss_dssp HHHHHHHHHHHHHHCCSTHHHHHHHHHTTCCCCSCCHHHHHHHHHHHHHHSCTTCCSSCSCSCTTTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHhcccccCccHHHHHHHHHHHhccCccccccchhhhhhhcccchhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999987753211 111245678899
Q ss_pred HHHHHHHhhcCCchhhhhhhhhhcCccccCCccccCCCCCCccccccccCChHHHHhhcCCCceEEeeecceEeEEEEEe
Q 004212 392 AKIVKQVFSVLPVYEKIVPALLTDGVWNLSNTCSFTPGIPIGPMLAKPTKGVSEIVNKFQDMEFTCEYKYDGERAQIHYL 471 (768)
Q Consensus 392 ~~~vk~~y~~~pd~~~v~~~ll~~g~~~l~~~~~i~~g~PvkPMLA~~~~~i~~il~k~~g~~~~~E~KyDG~R~qih~~ 471 (768)
+..|+++|+.+|||+.|++.++++|+..+.++|.+++|+|++||||+++++++++++++++.+|++|+||||+|||+|++
T Consensus 269 ~~~v~~~~~~~p~~~~l~~~l~~~g~~~l~~~~~~~~g~pv~PMLA~~~~~~~~~l~~~~~~~~~~E~K~DG~R~qih~~ 348 (688)
T 1x9n_A 269 GMILKQTFCEVPDLDRIIPVLLEHGLERLPEHCKLSPGIPLKPMLAHPTRGISEVLKRFEEAAFTCEYKYDGQRAQIHAL 348 (688)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHHTGGGCCCCTTSCCCCCEEEEESSHHHHHHHTTTSCEEEEEEESSEEEEEEEC
T ss_pred HHHHHHHHhhCCCHHHHHHHHHhcchhhcccccCcCCCCCccCccCCccCCHHHHHhhcCCCeEEEEEccccEeEEEEEc
Confidence 99999999999999999999999998888888999999999999999999999999999888999999999999999996
Q ss_pred cCCeEEEEcCCcccCCCCCchHHHHHHhhcCCCCCCeEEEEEEEEEecCCCcccChhhHHhhhhccCCccccccceEEEE
Q 004212 472 EDGSVEIYSRNAERNTGKFPDVVLAVSRLKKPSVRSFVLDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIKVDVCIYA 551 (768)
Q Consensus 472 ~~g~V~lfSR~g~d~T~~fPel~~~l~~~~~~~~~~~ILDGElVa~d~~~g~~~pFq~L~~R~rk~~~~~~~~~~v~~~v 551 (768)
.+|+|++|||||+++|.+||++++++..++..++.++|||||||+||..+|+++|||.|++|.++++.....+.+++|++
T Consensus 349 ~~g~v~l~SR~g~d~t~~fPel~~~l~~~~~~~~~~~ILDGElV~~d~~~g~~~~F~~L~~r~r~~~~~~~~~~~v~~~v 428 (688)
T 1x9n_A 349 EGGEVKIFSRNQEDNTGKYPDIISRIPKIKLPSVTSFILDTEAVAWDREKKQIQPFQVLTTRKRKEVDASEIQVQVCLYA 428 (688)
T ss_dssp TTSCEEEECTTSCBCTTTCHHHHHTSGGGBCTTCCCEEEEEEEEEECTTTCSBCCHHHHTTSCSSCCCGGGCCSEEEEEE
T ss_pred CCCeEEEEeCCCCcccccchHHHHHHHHhhccCCCCeEEeEEEEEEeCCCCCcCCHHHHHHHhhcccchhhcccceEEEE
Confidence 56789999999999999999999988887765568999999999999877888999999999877654444567999999
Q ss_pred eeeeecCCccccCCcHHHHHHHHHHhhccCCCeEEEEeEEecCCHHHHHHHHHHHHHcCCceeEEeeCCCCCCccCCCCC
Q 004212 552 FDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRS 631 (768)
Q Consensus 552 FDiLylnG~~L~~~Pl~ERr~lL~~l~~~~~~~i~l~~~~~~~~~eei~~~~~~ai~~G~EGlVlK~~~~dS~Y~pGkRs 631 (768)
|||||+||++++++||.+||++|++++.+.++.++++++..+.+.+++.++|++++++|+||||+|+++.+|+|+||+|+
T Consensus 429 FDlL~l~G~~l~~~Pl~eRr~~L~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~a~~~g~EGlV~K~~~~ds~Y~~GkRs 508 (688)
T 1x9n_A 429 FDLIYLNGESLVREPLSRRRQLLRENFVETEGEFVFATSLDTKDIEQIAEFLEQSVKDSCEGLMVKTLDVDATYEIAKRS 508 (688)
T ss_dssp EEEEEETTEECTTSCHHHHHHHHHHHBCCBTTTEEECCEECCCCHHHHHHHHHHHHHTSEEEEEEEESSSSCSSCTTTCS
T ss_pred EechhhcCCccccCCHHHHHHHHHHhhccCCCcEEEEeeEecCCHHHHHHHHHHHHhcCCceeEEeecccCCCCCCCCcC
Confidence 99999999999999999999999999988777899999999999999999999999999999999998556999999999
Q ss_pred CCeEEEccccccccCCcccEEEEEEEcCCCCCCCccceEEEEEeeCCCCeEEEEEEeccCCCHHHHHHHHHHhccccCCC
Q 004212 632 LNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPK 711 (768)
Q Consensus 632 ~~WlKvK~dy~~~~~dtlDlvVIG~~~G~Gkr~g~~gsfLlg~~d~~~g~l~~vgkVGTGfsd~~l~~L~~~l~~~~~~~ 711 (768)
.+|+|+|++|+++|++++|+||||+++|+|+|+|++|+|+|||||+++|+|++||||||||||+++++|++.++++++..
T Consensus 509 ~~WlK~K~~y~~~~~dt~D~vVIG~~~g~Gkr~g~~gslllg~~d~~~~~l~~vgkvgtGftd~~~~~l~~~l~~~~~~~ 588 (688)
T 1x9n_A 509 HNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRAGRYGGFLLASYDEDSEELQAICKLGTGFSDEELEEHHQSLKALVLPS 588 (688)
T ss_dssp EEEEEEEHHHHHSSCEEEEEEEEEEEEBCTTSBTSEEEEEEEEEETTTTEEEEEEEECCSCCHHHHHHHHHHHHHTEESS
T ss_pred chHheeehhhhccccccccEEEEEEEeCCCCCCCceeeEEEEEEeCCCCeEEEEeeeCCCCCHHHHHHHHHHhhccccCC
Confidence 99999999999999999999999999999999999999999999987789999999999999999999999999999887
Q ss_pred CCCCccCCCCCCCcEEecCcceEEEEecceeecCCCcc
Q 004212 712 PRPYYRFADTISPDVWFEPTERPETSNSPASIVYDSQI 749 (768)
Q Consensus 712 p~~~~~~~~~~~pdvWv~P~~V~EV~~aeit~Sp~~~~ 749 (768)
|++++.++....|++||+|.+||||+|+|||.||+|+.
T Consensus 589 ~~~~~~~~~~~~p~vwv~P~~V~EV~~~e~t~S~~~~~ 626 (688)
T 1x9n_A 589 PRPYVRIDGAVIPDHWLDPSAVWEVKCADLSLSPIYPA 626 (688)
T ss_dssp CCTTEECSSSCCCSEEECSCCEEEEEESEEEEESSCCT
T ss_pred CCCccccCCCCCCcEEeCCcEEEEEEEEeeeccccccc
Confidence 66677776566899999999999999999999999954
No 2
>2hiv_A Thermostable DNA ligase; ATP-dependent, open conformation; 2.05A {Sulfolobus solfataricus} PDB: 2hix_A*
Probab=100.00 E-value=3.6e-108 Score=954.72 Aligned_cols=540 Identities=30% Similarity=0.526 Sum_probs=484.6
Q ss_pred cccCCCccchHHHHHHHHHHHhhhchHHHHHHHHHHHHhhhcCCCCchHHHHHHHhCccCCCcccc-ccCCCHHHHHHHH
Q 004212 184 CWEKGERVPFIFLSLVFDMISNETGRILITDIVCNMLRTVMETTPEDLVPVVYLAANKIAPAHEGL-ELGIGDASIIKAL 262 (768)
Q Consensus 184 ~~~~~~~~~F~~la~l~e~I~~tssr~~k~~iL~~~fr~~i~~~p~dl~~~vyl~~~~l~P~~e~~-elGIg~~~L~Kal 262 (768)
.|..+++|+|+.||++|++|++|++|++|+++|++||+.+ +|+|+.+++||++|+|+|+|+++ +|||+++.|+|++
T Consensus 14 ~~~~~~~~~f~~~~~~~~~l~~t~~r~~k~~~l~~~~~~~---~~~d~~~~~~ll~~~l~P~~~~~~~~gi~~~~L~k~~ 90 (621)
T 2hiv_A 14 LVPRGSHMEFKVIAEYFDKLEKISSRLQLTALLADLLSKS---DKTIIDKVVYIIQGKLWPDFLGYPELGIGEKFLIKAI 90 (621)
T ss_dssp -------CBTHHHHHHHHHHHHCCCHHHHHHHHHHHHHTS---CGGGHHHHHHHTTTCSSCGGGCCCCCCCCHHHHHHHH
T ss_pred CCCCCCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHhc---CchHHHHHHHHHhCCcCcccccccccCCCHHHHHHHH
Confidence 4999999999999999999999999999999999999995 78999999999999999999999 9999999999999
Q ss_pred HHHhCCCHHHHHHHHhhhCChHHHHhhhcccCC--cc--C----CCCCCcHHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 004212 263 AEACGRTESHVKKQYQEMGDLGLVAKASRSSQS--MM--R----KPDPLTITKVFDTFRLIAKEAGKDSQEKKKNRIKAL 334 (768)
Q Consensus 263 ~~a~G~s~~~ik~~y~~~GDlg~vA~~~r~~q~--~l--~----~~~~LTI~eV~~~L~kIA~~~G~~Sq~~K~~~l~~L 334 (768)
++++|++++.+++.|+++||||+||+.+++.+. ++ + .+++|||.+||+.|++||..+|++|+++|+.+|..|
T Consensus 91 ~~~~g~~~~~~~~~~~~~GDlg~~a~~~~~~~~~~~~~~f~~~~~~~~ltv~~V~~~L~~la~~~g~~s~~~k~~~l~~l 170 (621)
T 2hiv_A 91 SIATNTDENSVENLYKTIGDLGEVARRLKSKQQSTGILGFLGTTSKESLTVDEVYSTLSKVALTTGEGSRDLKIRLLAGL 170 (621)
T ss_dssp HHHHTCCHHHHHHHHHHHCCHHHHHHHHHHTC-------------CCCCBHHHHHHHHHHHHHCCSTTHHHHHHHHHHHH
T ss_pred HHHHCcCHHHHHHHHHhcCCHHHHHHHHHhhccccccccccccCCCCCCcHHHHHHHHHHHHhccCcccHHHHHHHHHHH
Confidence 999999999999999999999999999887765 33 2 468899999999999999999999999999999999
Q ss_pred HHhcCCChHHHHHHHHhhcccCcccHHHHHHHHHhhhccCCCCCCCCCCCcchHHHHHHHHHHHhhcCCchhhhhhhhhh
Q 004212 335 LVAATDCEPQYLIRLLQSKLRIGLAEQTLLAALGQAAVYNEQHSKPPPNIQSPLEEAAKIVKQVFSVLPVYEKIVPALLT 414 (768)
Q Consensus 335 l~~~t~~E~k~lvRiIlkdLRiGi~e~tVl~ala~a~~~~~~~~~~~~~l~~~l~~a~~~vk~~y~~~pd~~~v~~~ll~ 414 (768)
|.+|++.|++||+|+|+++||||+++++|+.|||+||.... .....++++|+.+|||+.+++.+++
T Consensus 171 l~~~~~~E~k~l~Rli~~~lRiG~~~~~vl~ala~a~~~~~--------------~~~~~v~~~~~~~~dl~~v~~~l~~ 236 (621)
T 2hiv_A 171 LKKADPLEAKFLVRFVEGRLRVGIGDATVLDAMAIAFGGGQ--------------SASEIIERAYNLRADLGNIAKIIVE 236 (621)
T ss_dssp HHHSCHHHHHHHHHHHHTCCCCCCCHHHHHHHHHHHHSSSG--------------GGHHHHHHHHHHSCCHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHcCCCccCccHHHHHHHHHHHhcccc--------------ccHHHHHHHHhcCCCHHHHHHHHHh
Confidence 99999999999999999999999999999999999986211 1234567899999999999999999
Q ss_pred cCccccCCccccCCCCCCccccccccCChHHHHhhcCCCceEEeeecceEeEEEEEecCCeEEEEcCCcccCCCCCchHH
Q 004212 415 DGVWNLSNTCSFTPGIPIGPMLAKPTKGVSEIVNKFQDMEFTCEYKYDGERAQIHYLEDGSVEIYSRNAERNTGKFPDVV 494 (768)
Q Consensus 415 ~g~~~l~~~~~i~~g~PvkPMLA~~~~~i~~il~k~~g~~~~~E~KyDG~R~qih~~~~g~V~lfSR~g~d~T~~fPel~ 494 (768)
.|+..+ .+|.+++|+|++||||+++++++++++++++ +|++|+||||+|||+|+. +|+|++|||||+++|.+||+++
T Consensus 237 ~g~~~l-~~~~~~~~~pv~PmLA~~~~~~~~~l~~~~~-~~~~E~K~DG~R~qi~~~-g~~v~l~SR~g~~~t~~fP~l~ 313 (621)
T 2hiv_A 237 KGIEAL-KTLKPQVGIPIRPMLAERLSNPEEILKKMGG-NAIVDYKYDGERAQIHKK-EDKIFIFSRRLENITSQYPDVV 313 (621)
T ss_dssp HCGGGG-TTCCCCTTSCCCCCEEEECSCHHHHHHHTTT-CEEEEEECSSEEEEEEEE-TTEEEEECTTCCBCGGGCHHHH
T ss_pred cCcccc-ccCCCCCCCCCCCeeCCccCchhHHHhhcCC-cEEEEEEEcceeEEEEEc-CCEEEEEcCCCcCcHhhhhhHH
Confidence 888777 6799999999999999999999988888865 799999999999999994 7899999999999999999999
Q ss_pred HHHHhhcCCCCCCeEEEEEEEEEecCCCcccChhhHHhhhhccC-CccccccceEEEEeeeeecCCccccCCcHHHHHHH
Q 004212 495 LAVSRLKKPSVRSFVLDCEIVAYDREKQKILPFQTLSTRARKNV-SLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREH 573 (768)
Q Consensus 495 ~~l~~~~~~~~~~~ILDGElVa~d~~~g~~~pFq~L~~R~rk~~-~~~~~~~~v~~~vFDiLylnG~~L~~~Pl~ERr~l 573 (768)
+++.+.++ +.++|||||||+||+++|+++||+.|++|.++.. .......+++|++|||||+||++|+++||.+||++
T Consensus 314 ~~~~~~l~--~~~~iLDGElv~~d~~~g~~l~F~~L~~r~~~~~~~~~~~~~~v~~~vFDlL~l~G~~l~~~pl~eRr~~ 391 (621)
T 2hiv_A 314 DYVSKYIE--GKEFIIEGEIVAIDPESGEMRPFQELMHRKRKSDIYEAIKEYPVNVFLFDLMYYEDVDYTTKPLEARRKL 391 (621)
T ss_dssp HHHHHHBC--CSSEEEEEEEEEBCTTTCCBCCTHHHHHHHHCSCHHHHHHHSCEEEEEEEEEEETTEECTTSCHHHHHHH
T ss_pred HHHHHhCC--CcCeEEeEEEEEeecCCCCcCCHHHHhhhccccchhhhcccCceEEEEEeccccCCCccccCCHHHHHHH
Confidence 98886664 4799999999999977788889999999932221 11123579999999999999999999999999999
Q ss_pred HHHhhccCCCeEEEEeEEecCCHHHHHHHHHHHHHcCCceeEEeeCCCCCCccCCCCCCCeEEEccccccccCCcccEEE
Q 004212 574 LYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVP 653 (768)
Q Consensus 574 L~~l~~~~~~~i~l~~~~~~~~~eei~~~~~~ai~~G~EGlVlK~~~~dS~Y~pGkRs~~WlKvK~dy~~~~~dtlDlvV 653 (768)
|++++.+. +.+++++...+.+.++++++|++++++|+||||+|+++.+|+|+||+|+.+|+|+|++|+++|+|++|+||
T Consensus 392 L~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~g~EGlv~K~~~~ds~Y~~G~Rs~~WlK~K~~~~~~~~dt~D~vV 470 (621)
T 2hiv_A 392 LESIVKPN-DYVKIAHHIQANNVEDLKSFFYRAISEGGEGVMVKAIGKDAIYQAGARGWLWIKLKRDYQSEMADTVDLVV 470 (621)
T ss_dssp HHHHBCCC-SSEEECCEEEESSHHHHHHHHHHHHHTTCCEEEEECCSTTCCCCTTCEEEEEEEEETTCTTSSCEEEEEEE
T ss_pred HHHHhCcC-CcEEEeeeEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCCCccCCCcCCCeEEEechhccCcCceeEEEE
Confidence 99999864 78899999999999999999999999999999999987689999999999999999999999999999999
Q ss_pred EEEEcCCCCCCCccceEEEEEeeCCCCeEEEEEEeccCCCHHHHHHHHHHhccccCCCCCCCccCCCCCCCcEEecCcce
Q 004212 654 IAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTER 733 (768)
Q Consensus 654 IG~~~G~Gkr~g~~gsfLlg~~d~~~g~l~~vgkVGTGfsd~~l~~L~~~l~~~~~~~p~~~~~~~~~~~pdvWv~P~~V 733 (768)
||+++|+|+|+|++|+|+|||||+++|+|++||||||||||+++++|++.+++++++.+| + ......+|++||+|.+|
T Consensus 471 iG~~~g~Gkr~g~~g~lllg~~d~~~~~l~~vgkvgtGftd~~~~~l~~~l~~~~~~~~p-~-~~~~~~~~~vwv~P~~V 548 (621)
T 2hiv_A 471 VGGFYGKGKRGGKISSLLMAAYNPKTDSFESVCKVASGFSDEQLDELQKKLMEIKRDVKH-P-RVNSKMEPDIWVEPVYV 548 (621)
T ss_dssp EEEEECSGGGTTSEEEEEEEEEETTTTEEEEEEEECBSCCHHHHHHHHHHHHTTEESSCC-T-TEECSSCCSEEECSCCE
T ss_pred EEEEcCCCCCCCcccceEEEEEeCCCCeEEEEeeeCCCCCHHHHHHHHHHHhhhccCCCC-C-CcccCCCceEEecCceE
Confidence 999999999999999999999998778999999999999999999999999999887632 2 33344579999999999
Q ss_pred EEEEecceeecCCCc
Q 004212 734 PETSNSPASIVYDSQ 748 (768)
Q Consensus 734 ~EV~~aeit~Sp~~~ 748 (768)
|||+|++||.||+|+
T Consensus 549 ~EV~~~~~t~s~~~~ 563 (621)
T 2hiv_A 549 AEIIGSEITISPLHT 563 (621)
T ss_dssp EEEEESEEEEETTCC
T ss_pred EEEEEEEEEcCcccc
Confidence 999999999999994
No 3
>3gde_A DNA ligase; DNA-binding domain, adenylation domain, OB-fold domain, ATP-binding, cell cycle, cell division, DNA damage, DNA recombination; HET: DNA; 2.30A {Archaeoglobus fulgidus}
Probab=100.00 E-value=2.7e-105 Score=919.53 Aligned_cols=511 Identities=29% Similarity=0.455 Sum_probs=465.8
Q ss_pred CccchHHHHHHHHHHHhhhchHHHHHHHHHHHHhhhcCCCC-chHHHHHHHhCccCCCccccccCCCHHHHHHHHHHHhC
Q 004212 189 ERVPFIFLSLVFDMISNETGRILITDIVCNMLRTVMETTPE-DLVPVVYLAANKIAPAHEGLELGIGDASIIKALAEACG 267 (768)
Q Consensus 189 ~~~~F~~la~l~e~I~~tssr~~k~~iL~~~fr~~i~~~p~-dl~~~vyl~~~~l~P~~e~~elGIg~~~L~Kal~~a~G 267 (768)
+-|+|+.||++|++|++|++|++|+++|++||+.+ +|+ ++.+++||++|+++|+|++++||||++.|+|++++++|
T Consensus 2 ~~m~~~~~a~~~~~i~~t~~r~~k~~~l~~~~~~~---~~~~~~~~~~~l~~g~~~p~~~~~~~gi~~~~l~~~~~~~~g 78 (558)
T 3gde_A 2 SHMLFAEFAEFCERLEKISSTLELTARIAAFLQKI---EDERDLYDVVLFITGKVYPPWDERELGVGIGLLYEALENVSG 78 (558)
T ss_dssp CSCBHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTC---CSHHHHHHHHHHHTTCSSCTTSSCCCCCCHHHHHHHHHHHHC
T ss_pred CcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC---CchhhHHHHHHHHcCCCCcccccceeCcChHHHHHHHHHHHC
Confidence 45899999999999999999999999999999997 666 78999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhhhCChHHHHhhh--cccCCccCCCCCCcHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCCChHHH
Q 004212 268 RTESHVKKQYQEMGDLGLVAKAS--RSSQSMMRKPDPLTITKVFDTFRLIAKEAGKDSQEKKKNRIKALLVAATDCEPQY 345 (768)
Q Consensus 268 ~s~~~ik~~y~~~GDlg~vA~~~--r~~q~~l~~~~~LTI~eV~~~L~kIA~~~G~~Sq~~K~~~l~~Ll~~~t~~E~k~ 345 (768)
++++.+++.|+++||+|++|+.+ ++.|.+++ +++|||.+||+.|++||..+|++||++|+.+|..||.+|++.|++|
T Consensus 79 ~~~~~~~~~~~~~GDlg~~a~~~~~~~~~~~~~-~~~ltv~~V~~~L~~la~~~g~~s~~~k~~~l~~l~~~~~~~E~~~ 157 (558)
T 3gde_A 79 VKRSEIESMIREYGDLGLVAEQLIKKKKMTTLA-FEELTVRKVRETFDEIASLTGEGSMKRKIMLLTGLYGLATPLEARY 157 (558)
T ss_dssp CCHHHHHHHHHHHSCHHHHHHHHHHHHHHHSCC-CCCCBHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred cCHHHHHHHHHhcCCHHHHHHHHHhhccCCCCC-CCCCcHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHhCCHHHHHH
Confidence 99999999999999999999874 34455554 6789999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccCcccHHHHHHHHHhhhccCCCCCCCCCCCcchHHHHHHHHHHHhhcCCchhhhhhhhhhcCccccCCccc
Q 004212 346 LIRLLQSKLRIGLAEQTLLAALGQAAVYNEQHSKPPPNIQSPLEEAAKIVKQVFSVLPVYEKIVPALLTDGVWNLSNTCS 425 (768)
Q Consensus 346 lvRiIlkdLRiGi~e~tVl~ala~a~~~~~~~~~~~~~l~~~l~~a~~~vk~~y~~~pd~~~v~~~ll~~g~~~l~~~~~ 425 (768)
|+|+|+++||||+++++|+.|||+||..++ ..++++|+.+|||+.|++.+++.|...+. .|.
T Consensus 158 l~rli~~~lRiG~~~~~vl~ala~a~~~~~-----------------~~~~~~~~~~~dl~~v~~~l~~~g~~~l~-~~~ 219 (558)
T 3gde_A 158 LTRLILNEMRLGVGEGIMRDAIARAFRADP-----------------ETVERAYMITNDLGRVAVVAKKEGEEGLR-KMK 219 (558)
T ss_dssp HHHHHTTCCCSSCCHHHHHHHHHHHTTCCH-----------------HHHHHHHHHHCCHHHHHHHHHHHHHHHHH-TCC
T ss_pred HHHHHhccccccccHHHHHHHHHHHhCCCH-----------------HHHHHHhccCCchHHHHHHHhhcCccccc-ccC
Confidence 999999999999999999999999986542 23567899999999999999887876664 489
Q ss_pred cCCCCCCccccccccCChHHHHhhcCCCceEEeeecceEeEEEEEecCCeEEEEcCCcccCCCCCchHHHHHHhhcCCCC
Q 004212 426 FTPGIPIGPMLAKPTKGVSEIVNKFQDMEFTCEYKYDGERAQIHYLEDGSVEIYSRNAERNTGKFPDVVLAVSRLKKPSV 505 (768)
Q Consensus 426 i~~g~PvkPMLA~~~~~i~~il~k~~g~~~~~E~KyDG~R~qih~~~~g~V~lfSR~g~d~T~~fPel~~~l~~~~~~~~ 505 (768)
+++|+|++||||+++++++++++++. +|++|+||||+|||+|+ .+|+|++|||||+++|.+||++++++...++.
T Consensus 220 ~~~~~p~~PmLA~~~~~~~~~~~~~~--~~~~E~K~DG~R~qi~~-~g~~v~l~SR~g~d~t~~fPel~~~~~~~l~~-- 294 (558)
T 3gde_A 220 IEIHIPVRMMLAQVAESLESAVREMR--TAAVEWKFDGSRVQVHW-DGSRVTIYSRRLENVTNALPDIVEEIKKSVKP-- 294 (558)
T ss_dssp CCTTSCCCCCEEEECSCHHHHHHHSS--SEEEEEECSSEEEEEEE-CSSCCEEEETTCCBCGGGCHHHHHHHHHHBCS--
T ss_pred CCCCCCCCCeeCCcCCChHHHhhhcc--ceEEEEeEeeEEEEEEE-eCCEEEEEcCCCCcccccchHHHHHHHhhCCC--
Confidence 99999999999999999998888873 79999999999999999 47899999999999999999999988886653
Q ss_pred CCeEEEEEEEEEecCCCcccChhhHHhhhhccCCcc--ccccceEEEEeeeeecCCccccCCcHHHHHHHHHHhhccCCC
Q 004212 506 RSFVLDCEIVAYDREKQKILPFQTLSTRARKNVSLS--DIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPG 583 (768)
Q Consensus 506 ~~~ILDGElVa~d~~~g~~~pFq~L~~R~rk~~~~~--~~~~~v~~~vFDiLylnG~~L~~~Pl~ERr~lL~~l~~~~~~ 583 (768)
++|||||||+|+ +|+++||+.|++|.++..... ..+.+++|++|||||+|| ++++.||.|||++|++++.. ++
T Consensus 295 -~~iLDGElv~~~--~g~~~~F~~L~~r~~~~~~~~~~~~~~pv~~~vFDlL~l~G-~l~~~pl~eRr~~L~~~~~~-~~ 369 (558)
T 3gde_A 295 -GVILDGEVIAVK--EGKPMPFQHVLRRFRRKHDVAKMVEKIPLEAHFFDILYHDG-ECIDLPLRERRKLLESAVNE-SE 369 (558)
T ss_dssp -SEEEEEEEEEEE--TTEEECHHHHHHHHHC--CTHHHHHHSCEEEEEEEEEEESS-BCTTSBHHHHHHHHHHHBCC-CS
T ss_pred -CeEEEeEEEEcC--CCcCCCHHHHHHHhccccchhhHhhcCCeEEEEEEEEeeCC-CccCCCHHHHHHHHHHhcCC-CC
Confidence 499999999994 477789999999976543221 125689999999999999 99999999999999999975 67
Q ss_pred eEEEEeEEecCCHHHHHHHHHHHHHcCCceeEEeeCCCCCCccCCCCCCCeEEEccccccccCCcccEEEEEEEcCCCCC
Q 004212 584 FFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKR 663 (768)
Q Consensus 584 ~i~l~~~~~~~~~eei~~~~~~ai~~G~EGlVlK~~~~dS~Y~pGkRs~~WlKvK~dy~~~~~dtlDlvVIG~~~G~Gkr 663 (768)
.+++++...+.+.++++++|++++++|+||||+|++ +|+|+||+|+.+|+|+|+++ +++|+||||+++|+|+|
T Consensus 370 ~i~~~~~~~~~~~~~~~~~~~~~~~~g~EGlv~K~~--ds~Y~~G~Rs~~WlK~K~~~-----~t~D~vViG~~~g~Gkr 442 (558)
T 3gde_A 370 KIKLAKQIVTDSVDEVRKMYDEAISAGHEGVMIKLP--SSPYIPGKRGKNWLKVKAIM-----ETLDLVVVGGEWGEGKR 442 (558)
T ss_dssp SEEECCEEEESCHHHHHHHHHHHHHTTCCEEEEECT--TCBCCTTCEEEEEEEEESSC-----CCEEEEEEEEEECCTTG
T ss_pred eEEEeeeEecCCHHHHHHHHHHHHHcCCceeEEecC--CCCCCCCCcCCceEEEeccc-----ceEEEEEEEEEeCCCCc
Confidence 899999999999999999999999999999999999 99999999999999999973 79999999999999999
Q ss_pred CCccceEEEEEeeCCCCeEEEEEEeccCCCHHHHHHHHHHhccccCCCCCCCccCCCCCCCcEEecCcceEEEEecceee
Q 004212 664 TGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTERPETSNSPASI 743 (768)
Q Consensus 664 ~g~~gsfLlg~~d~~~g~l~~vgkVGTGfsd~~l~~L~~~l~~~~~~~p~~~~~~~~~~~pdvWv~P~~V~EV~~aeit~ 743 (768)
+|++|+|+||+||+++|+|++||||||||||+++++|++.++++.+... .|++||+|.+||||+|++||.
T Consensus 443 ~g~~g~lllg~~d~~~g~l~~vgkvgsGftd~~~~~l~~~l~~~~~~~~----------~~~vwv~P~lV~EV~~~~~t~ 512 (558)
T 3gde_A 443 SHWLSSFELACLDPVTGKLLKVGRVATGFTEEDLEELTEMFRPLIVSQQ----------GKKVEFIPKYVFEVAYQEIQK 512 (558)
T ss_dssp GGSEEEEEEEEECTTTCCEEEEEEECSSCCHHHHHHHHHHHGGGEEEEE----------TTEEEECSCCEEEEECSEEEE
T ss_pred cCccceEEEEEeeCCCCEEEEEeeeCCCCCHHHHHHHHHHHHhhcccCC----------CCcEEecCcEEEEEEEeeeec
Confidence 9999999999999777899999999999999999999999998876542 478999999999999999999
Q ss_pred cCCCc
Q 004212 744 VYDSQ 748 (768)
Q Consensus 744 Sp~~~ 748 (768)
||+|+
T Consensus 513 s~~~~ 517 (558)
T 3gde_A 513 SPKYE 517 (558)
T ss_dssp CSSST
T ss_pred CCccC
Confidence 99984
No 4
>2cfm_A Thermostable DNA ligase; protein-nucleotide complex, cell cycle, cell division, DNA damage, DNA recombination, DNA repair, DNA replication; HET: AMP; 1.8A {Pyrococcus furiosus} PDB: 3rr5_A*
Probab=100.00 E-value=8.6e-104 Score=909.31 Aligned_cols=513 Identities=28% Similarity=0.480 Sum_probs=471.2
Q ss_pred cchHHHHHHHHHHHhhhchHHHHHHHHHHHHhhhcCCCCchHHHHHHHhCccCCCccccccCCCHHHHHHHHHHHhCCCH
Q 004212 191 VPFIFLSLVFDMISNETGRILITDIVCNMLRTVMETTPEDLVPVVYLAANKIAPAHEGLELGIGDASIIKALAEACGRTE 270 (768)
Q Consensus 191 ~~F~~la~l~e~I~~tssr~~k~~iL~~~fr~~i~~~p~dl~~~vyl~~~~l~P~~e~~elGIg~~~L~Kal~~a~G~s~ 270 (768)
|+|+.||++|++|++|++|++|+++|++||+.+ +|+|+.+++||++|+|+|+|++++|||+++.|+|++++++|+++
T Consensus 1 ~~f~~~a~~~~~l~~t~~r~~k~~~l~~~~~~~---~~~d~~~~~~ll~~~l~P~~~~~~~gi~~~~L~~~~~~~~g~~~ 77 (561)
T 2cfm_A 1 MRYLELAQLYQKLEKTTMKLIKTRLVADFLKKV---PDDHLEFIPYLILGEVFPEWDERELGVGEKLLIKAVAMATGIDA 77 (561)
T ss_dssp CBHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHS---CGGGTTTHHHHHTTCSSCTTCCCCCCCCHHHHHHHHHHHHSCCH
T ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc---CchHHHHHHHHHhCCCCccccccccCCCHHHHHHHHHHHHCcCH
Confidence 789999999999999999999999999999995 78999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCChHHHHhhhcccCC--ccCCCCCCcHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCCChHHHHHH
Q 004212 271 SHVKKQYQEMGDLGLVAKASRSSQS--MMRKPDPLTITKVFDTFRLIAKEAGKDSQEKKKNRIKALLVAATDCEPQYLIR 348 (768)
Q Consensus 271 ~~ik~~y~~~GDlg~vA~~~r~~q~--~l~~~~~LTI~eV~~~L~kIA~~~G~~Sq~~K~~~l~~Ll~~~t~~E~k~lvR 348 (768)
+.+++.|+++||+|+||+.++..+. +++ .++|||.+||+.|++||..+|++||++|+.+|..||.+|++.|++||+|
T Consensus 78 ~~~~~~~~~~GDlg~~~~~~~~~~~~~~~~-~~~ltv~~V~~~L~~la~~~g~~s~~~k~~~l~~ll~~~~~~e~~~l~r 156 (561)
T 2cfm_A 78 KEIEESVKDTGDLGESIALAVKKKKQKSFF-SQPLTIKRVYQTLVKVAETTGEGSQDKKVKYLADLFMDAEPLEAKYLAR 156 (561)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHTTTCCC-CCCCBHHHHHHHHHHHHHCCSSSHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHhccCcCcCcC-CCCCcHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 9999999999999999998876553 444 3789999999999999999999999999999999999999999999999
Q ss_pred HHhhcccCcccHHHHHHHHHhhhccCCCCCCCCCCCcchHHHHHHHHHHHhhcCCchhhhhhhhhhcCccccCCccccCC
Q 004212 349 LLQSKLRIGLAEQTLLAALGQAAVYNEQHSKPPPNIQSPLEEAAKIVKQVFSVLPVYEKIVPALLTDGVWNLSNTCSFTP 428 (768)
Q Consensus 349 iIlkdLRiGi~e~tVl~ala~a~~~~~~~~~~~~~l~~~l~~a~~~vk~~y~~~pd~~~v~~~ll~~g~~~l~~~~~i~~ 428 (768)
+|+++||||+++++|+.|||+||..+. ..++++|+.+|||+.+++.+++.|+..+. ++.+++
T Consensus 157 li~~~lriG~~~~~vl~ala~a~~~~~-----------------~~v~~~~~~~~~l~~v~~~l~~~g~~~l~-~~~~~~ 218 (561)
T 2cfm_A 157 TILGTMRTGVAEGLLRDAIAMAFHVKV-----------------ELVERAYMLTSDFGYVAKIAKLEGNEGLA-KVQVQL 218 (561)
T ss_dssp HHHTCCCCCCCHHHHHHHHHHHTTCCH-----------------HHHHHHHHHHCCHHHHHHHHHHHHHHHHH-HCCCCT
T ss_pred HHhccccccccHHHHHHHHHHHhcCCH-----------------HHHHHHHccCCCHHHHHHHHHhccccccc-ccCCCC
Confidence 999999999999999999999986431 34677899999999999999988876554 689999
Q ss_pred CCCCccccccccCChHHHHhhcCCCceEEeeecceEeEEEEEecCCeEEEEcCCcccCCCCCchHHHHHHhhcCCCCCCe
Q 004212 429 GIPIGPMLAKPTKGVSEIVNKFQDMEFTCEYKYDGERAQIHYLEDGSVEIYSRNAERNTGKFPDVVLAVSRLKKPSVRSF 508 (768)
Q Consensus 429 g~PvkPMLA~~~~~i~~il~k~~g~~~~~E~KyDG~R~qih~~~~g~V~lfSR~g~d~T~~fPel~~~l~~~~~~~~~~~ 508 (768)
|+|++||||+++++++++++++++ +|++|+||||+|||+|+. +|+|++|||||+++|.+||++++++.+.++ +.++
T Consensus 219 ~~P~~PmLA~~~~~~~~~~~~~~~-~~~~E~K~DG~R~~i~~~-~g~v~l~SR~g~~~t~~fPel~~~~~~~l~--~~~~ 294 (561)
T 2cfm_A 219 GKPIKPMLAQQAASIRDALLEMGG-EAEFEIKYDGARVQVHKD-GSKIIVYSRRLENVTRAIPEIVEALKEAII--PEKA 294 (561)
T ss_dssp TSCCCCCEEEEESCHHHHHHHTTS-CEEEEEECCSEEEEEEEE-TTEEEEECTTCCBCGGGCHHHHHHHHHHBC--SSEE
T ss_pred CCCCCCeeCCcCCChhHHHhhcCC-cEEEEEeEceEEEEEEEE-CCEEEEEeCCCCCchhhhhhHHHHHHHhCC--Ccce
Confidence 999999999999999888887754 799999999999999995 789999999999999999999998886664 3689
Q ss_pred EEEEEEEEEecCCCcccChhhHHhhhhccCCc--cccccceEEEEeeeeecCCccccCCcHHHHHHHHHHhhccCCCeEE
Q 004212 509 VLDCEIVAYDREKQKILPFQTLSTRARKNVSL--SDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFFQ 586 (768)
Q Consensus 509 ILDGElVa~d~~~g~~~pFq~L~~R~rk~~~~--~~~~~~v~~~vFDiLylnG~~L~~~Pl~ERr~lL~~l~~~~~~~i~ 586 (768)
|||||||+|| .+|+++||+.|++|.++.... .....+++|++|||||+||+++++.||.+||++|++++.+. +.++
T Consensus 295 iLDGElv~~d-~~g~~~~F~~L~~r~~~~~~~~~~~~~~~~~~~vFDlL~l~g~~l~~~pl~eRr~~L~~~~~~~-~~i~ 372 (561)
T 2cfm_A 295 IVEGELVAIG-ENGRPLPFQYVLRRFRRKHNIEEMMEKIPLELNLFDVLYVDGQSLIDTKFIDRRRTLEEIIKQN-EKIK 372 (561)
T ss_dssp EEEEEEEEBC-TTSSBCCTHHHHHHHHCCSCHHHHHHHSCEEEEEEEEEEETTEECTTSCHHHHHHHHHHHBCCC-SSEE
T ss_pred EeeeEEEEEc-CCCcccCHHHHHHHhhcccchhhhcccCceEEEEEEEEeECCcCcccCCHHHHHHHHHHHhCcC-CcEE
Confidence 9999999999 668888999999997643221 12357899999999999999999999999999999999764 6889
Q ss_pred EEeEEecCCHHHHHHHHHHHHHcCCceeEEeeCCCCCCccCCCCCCCeEEEccccccccCCcccEEEEEEEcCCCCCCCc
Q 004212 587 FATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGV 666 (768)
Q Consensus 587 l~~~~~~~~~eei~~~~~~ai~~G~EGlVlK~~~~dS~Y~pGkRs~~WlKvK~dy~~~~~dtlDlvVIG~~~G~Gkr~g~ 666 (768)
+++...+.+.++++++|++++++|+||||+|++ +|+|+||+|+.+|+|+|++| |++|+||||+++|+|+|+|+
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~g~EGlv~K~~--ds~Y~~G~Rs~~WlK~K~~~-----dt~D~vViG~~~g~Gkr~g~ 445 (561)
T 2cfm_A 373 VAENLITKKVEEAEAFYKRALEMGHEGLMAKRL--DAVYEPGNRGKKWLKIKPTM-----ENLDLVIIGAEWGEGRRAHL 445 (561)
T ss_dssp ECCEEEESCHHHHHHHHHHHHHTTCCEEEEECT--TCCCCTTCEEEEEEEECSSC-----CCEEEEEEEEEECSGGGTTS
T ss_pred EeeeEEcCCHHHHHHHHHHHHHcCCceeEEeCC--CCCCCCCCcCCCeEEEcccC-----cceeEEEEEEEeCCCCCCCc
Confidence 999999999999999999999999999999999 99999999999999999998 79999999999999999999
Q ss_pred cceEEEEEeeCCCCeEEEEEEeccCCCHHHHHHHHHHhccccCCCCCCCccCCCCCCCcEEecCcceEEEEecceeecCC
Q 004212 667 YGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTERPETSNSPASIVYD 746 (768)
Q Consensus 667 ~gsfLlg~~d~~~g~l~~vgkVGTGfsd~~l~~L~~~l~~~~~~~p~~~~~~~~~~~pdvWv~P~~V~EV~~aeit~Sp~ 746 (768)
+|+|+|||||+++|+|++||||||||||+++++|++.++++.++. ..|++||+|.+||||+|++||.||+
T Consensus 446 ~g~lllg~~d~~~~~~~~vgkvgsGftd~~~~~l~~~l~~~~~~~----------~~~~~wv~P~~V~EV~~~~~t~s~~ 515 (561)
T 2cfm_A 446 FGSFILGAYDPETGEFLEVGKVGSGFTDDDLVEFTKMLKPLIIKE----------EGKRVWLQPKVVIEVTYQEIQKSPK 515 (561)
T ss_dssp EEEEEEEEECTTTCCEEEEEEECSSCCHHHHHHHHHHHGGGEEEE----------ETTEEEECSCCEEEEECSEEECCSS
T ss_pred cceEEEEEEeCCCCeEEEEeEeCCCCCHHHHHHHHHHHhhhcccc----------CCCeEEeCCceEEEEEEEEEEcCCc
Confidence 999999999987789999999999999999999999999887543 2589999999999999999999999
Q ss_pred Cc
Q 004212 747 SQ 748 (768)
Q Consensus 747 ~~ 748 (768)
|+
T Consensus 516 ~~ 517 (561)
T 2cfm_A 516 YR 517 (561)
T ss_dssp ST
T ss_pred cC
Confidence 85
No 5
>3l2p_A DNA ligase 3; DNA ligase, DNA repair, ATP-binding, cell cycle, cell divisi damage; HET: DNA AMP; 3.00A {Homo sapiens}
Probab=100.00 E-value=5.2e-101 Score=886.66 Aligned_cols=524 Identities=24% Similarity=0.402 Sum_probs=436.0
Q ss_pred CccchHHHHHHHHHHHhhhchHHHHHHHHHHHHhhhcCCCCchHHHHHHHhCccCCCccccccCCCHHHHHHHHHHHhCC
Q 004212 189 ERVPFIFLSLVFDMISNETGRILITDIVCNMLRTVMETTPEDLVPVVYLAANKIAPAHEGLELGIGDASIIKALAEACGR 268 (768)
Q Consensus 189 ~~~~F~~la~l~e~I~~tssr~~k~~iL~~~fr~~i~~~p~dl~~~vyl~~~~l~P~~e~~elGIg~~~L~Kal~~a~G~ 268 (768)
+.|+|..||++|++|++|++|++|+++|++||+.+ .+++++...+|+++++|+|+|++++|||++++|+|+|++++|+
T Consensus 5 ~d~~F~~f~~l~~~ie~~s~r~~k~~il~~~~~~~--~~~~~~~~~~y~~~~~l~P~~~~~~~gi~ek~l~k~~~~~~g~ 82 (579)
T 3l2p_A 5 KDCLLREFRKLCAMVADNPSYNTKTQIIQDFLRKG--SAGDGFHGDVYLTVKLLLPGVIKTVYNLNDKQIVKLFSRIFNC 82 (579)
T ss_dssp GGGBHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCC---------CCHHHHHHHHCTTTSCCCCSCCHHHHHHHHHHHHTS
T ss_pred ccCcHHHHHHHHHHHHhccChHHHHHHHHHHHHhc--CCcccccchHHHHHHHhCCCccCcccCCcHHHHHHHHHHHHCc
Confidence 47999999999999999999999999999999987 3456788889999999999999999999999999999999999
Q ss_pred CHHHHHHHHhhhCChHHHHhhhcc--cCCccCCCCCCcHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCCChHHHH
Q 004212 269 TESHVKKQYQEMGDLGLVAKASRS--SQSMMRKPDPLTITKVFDTFRLIAKEAGKDSQEKKKNRIKALLVAATDCEPQYL 346 (768)
Q Consensus 269 s~~~ik~~y~~~GDlg~vA~~~r~--~q~~l~~~~~LTI~eV~~~L~kIA~~~G~~Sq~~K~~~l~~Ll~~~t~~E~k~l 346 (768)
+.+.+++.| +.||+|++|..... .+.....+++|||.+||+.|++||+.+|++||. .+|..|+.+|++.|+|||
T Consensus 83 ~~~~~~~~~-~~GD~~~~~~~~~~~~~~~~~~~~~~LTv~~V~~~L~~ia~~~g~~sq~---~~l~~l~~~~~~~E~k~l 158 (579)
T 3l2p_A 83 NPDDMARDL-EQGDVSETIRVFFEQSKSFPPAAKSLLTIQEVDEFLLRLSKLTKEDEQQ---QALQDIASRCTANDLKCI 158 (579)
T ss_dssp CHHHHHHHG-GGSCHHHHHHHHHHSCSSSCCCSSCCCBHHHHHHHHHHHHTCCSHHHHH---HHHHHHHTTCCSHHHHHH
T ss_pred CHHHHHHHH-HcCCHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHhccCcHHHH---HHHHHHHHhCCHHHHHHH
Confidence 999999999 78999998876432 222222357899999999999999998887764 579999999999999999
Q ss_pred HHHHhhcccCcccHHHHHHHHHhhhccCCCCCCCCCCCcchHHHHHHHHHHHhhcCCchhhhhhhhhhc--------Ccc
Q 004212 347 IRLLQSKLRIGLAEQTLLAALGQAAVYNEQHSKPPPNIQSPLEEAAKIVKQVFSVLPVYEKIVPALLTD--------GVW 418 (768)
Q Consensus 347 vRiIlkdLRiGi~e~tVl~ala~a~~~~~~~~~~~~~l~~~l~~a~~~vk~~y~~~pd~~~v~~~ll~~--------g~~ 418 (768)
+|+|+++||||++++||+.|||+++ .++|+.++|+..++..++.. |+.
T Consensus 159 ~R~i~~~lriG~~e~~vl~a~~~~a------------------------~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~ 214 (579)
T 3l2p_A 159 IRLIKHDLKMNSGAKHVLDALDPNA------------------------YEAFKASRNLQDVVERVLHNAQEVEKEPGQR 214 (579)
T ss_dssp HHHHTTCCSSSCCHHHHHHTTCTTH------------------------HHHHHHSCCHHHHHHHHHHHHHSCC------
T ss_pred HHHHHhhhhcccchhHHHHHhCHHH------------------------HHHHhhcCCHHHHHHHHHhhchhhhcccccc
Confidence 9999999999999999999997532 25688899999999877653 333
Q ss_pred ccCCccccCCCCCCccccccccCChHHHHhhcCCCceEEeeecceEeEEEEEecCCeEEEEcCCcccCCCCCchHHH---
Q 004212 419 NLSNTCSFTPGIPIGPMLAKPTKGVSEIVNKFQDMEFTCEYKYDGERAQIHYLEDGSVEIYSRNAERNTGKFPDVVL--- 495 (768)
Q Consensus 419 ~l~~~~~i~~g~PvkPMLA~~~~~i~~il~k~~g~~~~~E~KyDG~R~qih~~~~g~V~lfSR~g~d~T~~fPel~~--- 495 (768)
.+. .+.+++|.||+||||+++++++++++++++ +|++|+||||+|+|+|++ +|+|++|||||+++ ||++.+
T Consensus 215 ~~~-~~~~~~~~pv~PMLA~~~~~~~~~~~~~~~-~~~~E~K~DG~R~qih~~-g~~v~l~SR~g~~~---~p~~~~~l~ 288 (579)
T 3l2p_A 215 RAL-SVQASLMTPVQPMLAEACKSVEYAMKKCPN-GMFSEIKYDGERVQVHKN-GDHFSYFSRSLKPV---LPHKVAHFK 288 (579)
T ss_dssp --C-CCCCCTTSCCCCCEEEECCCHHHHHHHCTT-CEEEEECCCSEEEEEEEE-TTEEEEECTTSCBC---CGGGTTTGG
T ss_pred ccc-ccccCCCCCCCCccCCcCCCHHHHHhhCCC-CeEEEEccCcEEEEEEEE-CCEEEEECCCCCcc---ChhHHHHHH
Confidence 322 367889999999999999999999988864 799999999999999995 78999999999998 466443
Q ss_pred -HHHhhcCCCCCCeEEEEEEEEEecCCCcccChhhHHhhhhccCCccccccceEEEEeeeeecCCccccCCcHHHHHHHH
Q 004212 496 -AVSRLKKPSVRSFVLDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHL 574 (768)
Q Consensus 496 -~l~~~~~~~~~~~ILDGElVa~d~~~g~~~pFq~L~~R~rk~~~~~~~~~~v~~~vFDiLylnG~~L~~~Pl~ERr~lL 574 (768)
.+...++ ...++|||||+|+||+++|+++|||.|+.|.++.. ...++||++|||||+||++|+++||.|||++|
T Consensus 289 ~~l~~~~~-~~~~~iLDGElv~~d~~~g~~~~F~~L~~~~~~~~----~~~~v~~~vFDlL~l~G~~L~~~Pl~eRr~~L 363 (579)
T 3l2p_A 289 DYIPQAFP-GGHSMILDSEVLLIDNKTGKPLPFGTLGVHKKAAF----QDANVCLFVFDCIYFNDVSLMDRPLCERRKFL 363 (579)
T ss_dssp GTHHHHST-TCSEEEEEEEEEEBCTTTCCBCCGGGGSHHHHHHC----SSCCEEEEEEEEEEETTEECTTSCHHHHHHHH
T ss_pred HHHHHhcC-cCCceEEEeEEEEEeCCCCcccCHHHHHHHhhhhc----ccCCeEEEEEEeeccCCCccccCCHHHHHHHH
Confidence 3334443 34789999999999987788889999987754332 24689999999999999999999999999999
Q ss_pred HHhhccCCCeEEEEeEEecCCHHHHHHHHHHHHHcCCceeEEeeCCCCCCccCCCCCCCeEEEccccccc--cCCcccEE
Q 004212 575 YDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIES--IGDSLDLV 652 (768)
Q Consensus 575 ~~l~~~~~~~i~l~~~~~~~~~eei~~~~~~ai~~G~EGlVlK~~~~dS~Y~pGkRs~~WlKvK~dy~~~--~~dtlDlv 652 (768)
++++.+.++.+++++...+.+.+++.++|++++++|+||||+|++ +|+|+||+| +|+|+|++|+++ +++++|+|
T Consensus 364 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~a~~~g~EGlv~K~~--ds~Y~~Grr--~WlK~K~~y~~~g~~~~t~D~v 439 (579)
T 3l2p_A 364 HDNMVEIPNRIMFSEMKRVTKALDLADMITRVIQEGLEGLVLKDV--KGTYEPGKR--HWLKVKKDYLNEGAMADTADLV 439 (579)
T ss_dssp HHHCCCBTTTEEECCEEEECSHHHHHHHHHHHHHTTCCCEEEEES--SCCCCTTCE--EEEEECTTTCC---CCEEEEEE
T ss_pred HHHhhcCCCeEEEeeeEEcCCHHHHHHHHHHHHHhCCCceEEecC--cCCCCCCCe--eeEEEechhhccccccccccEE
Confidence 999998788999999888889999999999999999999999999 999999988 899999999987 88999999
Q ss_pred EEEEEcCCCCCCCccceEEEEEeeCCCCeEEEEEEeccCCCHHHHHHHHHHhccccCCCC----CCCccCCCCCCCcEEe
Q 004212 653 PIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKP----RPYYRFADTISPDVWF 728 (768)
Q Consensus 653 VIG~~~G~Gkr~g~~gsfLlg~~d~~~g~l~~vgkVGTGfsd~~l~~L~~~l~~~~~~~p----~~~~~~~~~~~pdvWv 728 (768)
|||+++|+|+|+|++|+|+|||||+++|+|++||||||||||+++++|.+.|.++.++.+ +.|++++....|++|+
T Consensus 440 ViG~~~G~Gkr~g~~g~lllg~~d~~~~~l~~vgkvgtGftd~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~pd~~~ 519 (579)
T 3l2p_A 440 VLGAFYGQGSKGGMMSIFLMGCYDPGSQKWCTVTKCAGGHDDATLARLQNELDMVKISKDPSKIPSWLKVNKIYYPDFIV 519 (579)
T ss_dssp EEEEECCCTTSCSSCCEEEEEEECTTTSSEEEEEEECTTCCHHHHHHTTTSSCCCCCCC---------------------
T ss_pred EEEEEeCCCCCCCceeEEEEEEEeCCCCeEEEecCccCCCCHHHHHHHHHHhhccccccCCccCCceeecCCCCCCcEEE
Confidence 999999999999999999999999877899999999999999999999999999987654 3466666666899998
Q ss_pred -cC--cceEEEEecceeecCCCcccccCCcc-ccccc
Q 004212 729 -EP--TERPETSNSPASIVYDSQITCLPSSY-MPFSR 761 (768)
Q Consensus 729 -~P--~~V~EV~~aeit~Sp~~~~~~~~~~~-~~~~~ 761 (768)
+| .+||||+|++|+.||+|+ ++|| +-|-|
T Consensus 520 ~~P~~~~V~Ei~~~~i~~S~~~~----~~G~sLRFPR 552 (579)
T 3l2p_A 520 PDPKKAAVWEITGAEFSKSEAHT----ADGISIRFPR 552 (579)
T ss_dssp -----CEEEEEEESCEEECTTSS----STTEEESSCE
T ss_pred ecCCCCeEEEEEeeEEeecCCcc----cCCEEEECCe
Confidence 66 799999999999999983 3555 44443
No 6
>1vs0_A Putative DNA ligase-like protein RV0938/MT0965; OB fold, nucleotidyl transferase, structural genomic protein structure initiative; HET: APK MSE; 2.40A {Mycobacterium tuberculosis}
Probab=100.00 E-value=7e-61 Score=515.71 Aligned_cols=283 Identities=24% Similarity=0.329 Sum_probs=236.8
Q ss_pred cCCCCCCccccccccCChHHHHhhcCCCceEEeeecceEeEEEEEecCCeEEEEcCCcccCCCCCchHHHHHHhhcCCCC
Q 004212 426 FTPGIPIGPMLAKPTKGVSEIVNKFQDMEFTCEYKYDGERAQIHYLEDGSVEIYSRNAERNTGKFPDVVLAVSRLKKPSV 505 (768)
Q Consensus 426 i~~g~PvkPMLA~~~~~i~~il~k~~g~~~~~E~KyDG~R~qih~~~~g~V~lfSR~g~d~T~~fPel~~~l~~~~~~~~ 505 (768)
.++|.|++||||++++ ++. +.+.+|++|+||||+|+|+|+. +|+|++|||||+++|.+||++.+.+..+ + .
T Consensus 3 ~~~~~p~~PmLA~~~~-~~~----~~~~~~~~E~K~DG~R~~~~~~-~g~v~l~SR~g~~~t~~fPel~~~~~~l-~--~ 73 (310)
T 1vs0_A 3 VFEFDNLAPMLATHGT-VAG----LKASQWAFEGXWDGYRLLVEAD-HGAVRLRSRSGRDVTAEYPQLRALAEDL-A--D 73 (310)
T ss_dssp -CCGGGCCCCEEEECC-CTT----CCTTTEEEEEECCSEEEEEEEE-TTEEEEEETTCCBCGGGCGGGHHHHHHT-T--T
T ss_pred CCCCCCccCeECCCcC-CCc----cCCCCEEEEEccCcEEEEEEEE-CCEEEEEcCCCCCchhhchhHHHHHHhC-C--C
Confidence 4688999999999985 321 2466899999999999999995 7899999999999999999998866543 2 2
Q ss_pred CCeEEEEEEEEEecCCCcccChhhHHhhhhccCCccccccceEEEEeeeeecCCccccCCcHHHHHHHHHHhhccCCCeE
Q 004212 506 RSFVLDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFF 585 (768)
Q Consensus 506 ~~~ILDGElVa~d~~~g~~~pFq~L~~R~rk~~~~~~~~~~v~~~vFDiLylnG~~L~~~Pl~ERr~lL~~l~~~~~~~i 585 (768)
.++|||||||++|. +|+ .+|+.|++|.++. +++|++||||++||++++++||.+||++|++++.+. .+
T Consensus 74 ~~~iLDGElv~~d~-~g~-~~F~~l~~r~~~~--------~~~~~vFDll~~~g~~l~~~pl~eRr~~L~~~~~~~--~i 141 (310)
T 1vs0_A 74 HHVVLDGEAVVLDS-SGV-PSFSQMQNRGRDT--------RVEFWAFDLLYLDGRALLGTRYQDRRKLLETLANAT--SL 141 (310)
T ss_dssp CEEEEEEEEECBCT-TSC-BCHHHHHTCCTTS--------CCEEEEEEEEEETTEECTTSCHHHHHHHHHHHHHHS--CC
T ss_pred ccEEEeeEEEEECC-CCC-cCHHHHHhhccCC--------cEEEEEEEeEEECCcCcccCCHHHHHHHHHHhccCC--cE
Confidence 58999999999986 354 5999999987643 599999999999999999999999999999998753 56
Q ss_pred EEEeEEecCCHHHHHHHHHHHHHcCCceeEEeeCCCCCCccCCCCCCCeEEEccccccccCCcccEEEEEEEcCCCCCCC
Q 004212 586 QFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTG 665 (768)
Q Consensus 586 ~l~~~~~~~~~eei~~~~~~ai~~G~EGlVlK~~~~dS~Y~pGkRs~~WlKvK~dy~~~~~dtlDlvVIG~~~G~Gkr~g 665 (768)
++++.... +++++|++++++|+||||+|++ +|+|++|+|+.+|+|+|++| ++|+||+|+++|+|+++|
T Consensus 142 ~~~~~~~~----~~~~~~~~~~~~g~EGlv~K~~--ds~Y~~G~Rs~~WlK~K~~~------~~D~vv~G~~~g~G~r~g 209 (310)
T 1vs0_A 142 TVPELLPG----DGAQAFACSRKHGWEGVIAKRR--DSRYQPGRRCASWVKDKHWN------TQEVVIGGWRAGEGGRSS 209 (310)
T ss_dssp CCCCCCCS----SHHHHHHHHHHTTCCEEEEEET--TCCCCTTCEEEEEEEEESSE------EEEEEEEEEEC-------
T ss_pred EECccCch----HHHHHHHHHHHcCCceEEEeCC--CCCcCCCCcChHHhccchhe------EEEEEEEEEEcCCCCccC
Confidence 66665432 4899999999999999999999 99999999999999999987 899999999999999999
Q ss_pred ccceEEEEEeeCCCCeEEEEEEeccCCCHHHHHHHHHHhccccCCCCCCCcc-C-CCCCCCcEEecCcceEEEEecceee
Q 004212 666 VYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYR-F-ADTISPDVWFEPTERPETSNSPASI 743 (768)
Q Consensus 666 ~~gsfLlg~~d~~~g~l~~vgkVGTGfsd~~l~~L~~~l~~~~~~~p~~~~~-~-~~~~~pdvWv~P~~V~EV~~aeit~ 743 (768)
.+|+|+||+||++ | +++||+|||||||+++++|++.++++.++.| +|.. . ....+|++||+|.+||||+|++||.
T Consensus 210 ~~g~lllg~~d~~-g-~~~vgkvgtGftd~~~~~l~~~l~~~~~~~~-p~~~~~~~~~~~~~~wv~P~~V~ev~~~~~t~ 286 (310)
T 1vs0_A 210 GVGSLLMGIPGPG-G-LQFAGRVGTGLSERELANLKEMLAPLHTDES-PFDVPLPARDAKGITYVKPALVAEVRYSEWTP 286 (310)
T ss_dssp -CCEEEEEEEETT-E-EEEEEEECSSCCHHHHHHHHHHHGGGBCSSC-SBSSCCCHHHHTTEEEBCTTCEEEEEESCBCT
T ss_pred ccceEEEEEEcCC-C-CEEEEEECCCCCHHHHHHHHHHHHhhccCCC-CccccCCcccCCCCEEEcCCEEEEEEEEEEcC
Confidence 9999999999864 5 9999999999999999999999999987654 4431 1 1234689999999999999999985
Q ss_pred c
Q 004212 744 V 744 (768)
Q Consensus 744 S 744 (768)
+
T Consensus 287 ~ 287 (310)
T 1vs0_A 287 E 287 (310)
T ss_dssp T
T ss_pred C
Confidence 3
No 7
>1a0i_A DNA ligase; DNA replication; HET: DNA ATP; 2.60A {Enterobacteria phage T7} SCOP: b.40.4.6 d.142.2.1
Probab=100.00 E-value=1.8e-55 Score=480.54 Aligned_cols=293 Identities=18% Similarity=0.135 Sum_probs=241.5
Q ss_pred ccccCCCCCCccccccccCChHHHHhhcCCCceEEeeecceEeEEEEEecCCeEEEEcCCcccCCC------CCchHHHH
Q 004212 423 TCSFTPGIPIGPMLAKPTKGVSEIVNKFQDMEFTCEYKYDGERAQIHYLEDGSVEIYSRNAERNTG------KFPDVVLA 496 (768)
Q Consensus 423 ~~~i~~g~PvkPMLA~~~~~i~~il~k~~g~~~~~E~KyDG~R~qih~~~~g~V~lfSR~g~d~T~------~fPel~~~ 496 (768)
+|+++||+|++|||+. +.++++.. ..|++|+||||+|||+|+..+|+|++|||+|++++. .||+++++
T Consensus 2 ~~~~~~~~pv~pmL~~----~~~~l~~~--~~~~~E~K~DG~R~~~~~~~~g~v~l~SR~g~~~~~l~~~~~~~p~~~~~ 75 (348)
T 1a0i_A 2 NIKTNPFKAVSFVESA----IKKALDNA--GYLIAEIKYDGVRGNICVDNTANSYWLSRVSKTIPALEHLNGFDVRWKRL 75 (348)
T ss_dssp TTCCCCEEEEECCHHH----HHHHHHHH--SSEEEEECCCSEEEEEEEETTSEEEEECTTSCBCGGGGGGCEECHHHHHH
T ss_pred eeeccCCCcCchhhhc----HHHHHhhc--CcEEEEEeeceeEEEEEEeCCCeEEEEcCCCCCCcchhhhhcccchHHHH
Confidence 4789999999999943 45555543 379999999999999999656899999999998876 78999998
Q ss_pred HHhhcCCCCCCeEEEEEEEEEecCCCcccChhhHHhhhhc------cC-----------Cc------cccccceEEEEee
Q 004212 497 VSRLKKPSVRSFVLDCEIVAYDREKQKILPFQTLSTRARK------NV-----------SL------SDIKVDVCIYAFD 553 (768)
Q Consensus 497 l~~~~~~~~~~~ILDGElVa~d~~~g~~~pFq~L~~R~rk------~~-----------~~------~~~~~~v~~~vFD 553 (768)
+...+.....++|||||||+++ .||+.|++|.+. ++ .. .....+++|++||
T Consensus 76 l~~~~~~~~~~~iLDGElv~~~------~~F~~l~~~~~~k~~~~k~v~~~~~~~r~~~~~~~~i~~~~~~~~~~~~vFD 149 (348)
T 1a0i_A 76 LNDDRCFYKDGFMLDGELMVKG------VDFNTGSGLLRTKWTDTKNQEFHEELFVEPIRKKDKVPFKLHTGHLHIKLYA 149 (348)
T ss_dssp HHSTTCCCTTEEEEEEEEEESS------SCTTTHHHHHHCCSCCSSBSSCC--------CCCSCCCCCBCTTTEEEEEEE
T ss_pred HhhhhccCCCCEEEEEEEEEeC------CCHHHHHHHhcccccccccccccccccccccccccccccccccCcEEEEEEe
Confidence 8864322235899999999973 499999999762 11 11 1235789999999
Q ss_pred eeecC----Cccc---cCCcHHHHHHHHHHhhccCC-CeEEEEeEEecCCHHHHHHHHHHHHHcCCceeEEeeCCCCCCc
Q 004212 554 ILYRN----GQPL---LQEQLRVRREHLYDSFEEEP-GFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATY 625 (768)
Q Consensus 554 iLyln----G~~L---~~~Pl~ERr~lL~~l~~~~~-~~i~l~~~~~~~~~eei~~~~~~ai~~G~EGlVlK~~~~dS~Y 625 (768)
|||+| |++| +++||.+||++|++++...+ ..+++++...+++.+++.++|++++++|+||||+|++ +|+|
T Consensus 150 ll~l~~~~~G~~l~~~~~~pl~eRr~~L~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~EGlv~K~~--ds~Y 227 (348)
T 1a0i_A 150 ILPLHIVESGEDCDVMTLLMQEHVKNMLPLLQEYFPEIEWQAAESYEVYDMVELQQLYEQKRAEGHEGLIVKDP--MCIY 227 (348)
T ss_dssp EEEHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHCTTSEEEECCEEEESSHHHHHHHHHHHHTTTCCCEEEECT--TCEE
T ss_pred eEeeCCCCCCccchhhccCCHHHHHHHHHHHhhhCCCCeEEEeccEecCCHHHHHHHHHHHHHcCCceEEEeCC--CCCC
Confidence 99999 9998 89999999999999987654 5789999999999999999999999999999999999 9999
Q ss_pred cCCCCCCCeEEEccccccccCCcccEEEEEEEcCCCCC--CCccceEEEEEeeCCCCeEEEEEEeccCCCHHHHHHHHHH
Q 004212 626 EPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKR--TGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSS 703 (768)
Q Consensus 626 ~pGkRs~~WlKvK~dy~~~~~dtlDlvVIG~~~G~Gkr--~g~~gsfLlg~~d~~~g~l~~vgkVGTGfsd~~l~~L~~~ 703 (768)
++|+|+. |+|+|++| ++|+||||+++|+|+| +|++|+|+|. ++ +|+|++ ||||||+++++|++.
T Consensus 228 ~~Grr~~-wlK~K~~~------~~D~vViG~~~g~g~r~~~g~~~~~~~~-~~--~g~~~~----gtGftd~~~~~l~~~ 293 (348)
T 1a0i_A 228 KRGKKSG-WWKMKPEN------EADGIIQGLVWGTKGLANEGKVIGFEVL-LE--SGRLVN----ATNISRALMDEFTET 293 (348)
T ss_dssp CSEEEEE-EEEESCCE------EEEEEEEEEECCCTTTSSCSSCCEEEEE-CT--TSCEEE----EBCCCSHHHHHHHHH
T ss_pred CCCCccC-cEEEeecc------cEEEEEEEEEeCCCCccCCceEEEEEEE-eC--CCCEEE----ccCCCHHHHHHHHHH
Confidence 9998875 99999998 8999999999999987 8999999985 33 477764 699999999999999
Q ss_pred hccccCCCCCCCccCCCCCCCcEEecCc--ceEEEEecceee
Q 004212 704 LRSKVIPKPRPYYRFADTISPDVWFEPT--ERPETSNSPASI 743 (768)
Q Consensus 704 l~~~~~~~p~~~~~~~~~~~pdvWv~P~--~V~EV~~aeit~ 743 (768)
++++.+..+.+.+......++++|++|. +||||+|++||.
T Consensus 294 l~~~~~~~~~~~~~~~~~~~~~~wv~P~~g~v~eV~~~~~t~ 335 (348)
T 1a0i_A 294 VKEATLSQWGFFSPYGIGDNDACTINPYDGWACQISYMEETP 335 (348)
T ss_dssp HHHHHTTTSCCC--------CCCCCCTTTTCEEEEEESEECT
T ss_pred HhhhccccCCCcccccCCCCCcEEEcCCCcEEEEEEeeeecC
Confidence 9998754333222233345789999999 999999999985
No 8
>1fvi_A Chlorella virus DNA ligase-adenylate; adenylated DNA ligase; HET: AMP; 2.00A {Chlorella virus} SCOP: b.40.4.6 d.142.2.1 PDB: 2q2t_A* 2q2u_A* 1p8l_A*
Probab=100.00 E-value=1.6e-46 Score=401.71 Aligned_cols=246 Identities=17% Similarity=0.170 Sum_probs=207.0
Q ss_pred CCccccccccCChHHHHhhcCCCceEEeeecceEeEEEEEecCCeEEEEcCCcccCCCCCchHHHHHHhhcCCCCCCeEE
Q 004212 431 PIGPMLAKPTKGVSEIVNKFQDMEFTCEYKYDGERAQIHYLEDGSVEIYSRNAERNTGKFPDVVLAVSRLKKPSVRSFVL 510 (768)
Q Consensus 431 PvkPMLA~~~~~i~~il~k~~g~~~~~E~KyDG~R~qih~~~~g~V~lfSR~g~d~T~~fPel~~~l~~~~~~~~~~~IL 510 (768)
+++||||++++.+.+ .+.+|++|+||||+|||+ +| ++|||+|+++|. |+|++.+...+ ++||
T Consensus 2 ~~~PmLA~~~~~~~~-----~~~~~~~E~K~DG~R~~~----~g--~l~SR~g~~~t~--p~l~~~~~~~~-----~~iL 63 (297)
T 1fvi_A 2 ITKPLLAATLENIED-----VQFPCLATPKIAGIRSVK----QT--QMLSRTFKPIRN--SVMNRLLTELL-----PEGS 63 (297)
T ss_dssp CSSCCBCEECCCGGG-----CCSSEEEEECCCSEEEEE----SS--SEECTTSCBCSC--HHHHHHHHHHS-----CTTE
T ss_pred CcCceeCCccCcCcC-----CCCcEEEEeeEeeeeEEe----cC--EEECCCCcccCc--HHHHHHHHhcC-----CeeE
Confidence 689999999886521 145799999999999997 45 999999999996 99888777653 7899
Q ss_pred EEEEEEEecCCCcccChhhHHhhhhccCCccccccceEEEEeeeeecCCccccCCcHHHHHHHHHHhhccCC-C----eE
Q 004212 511 DCEIVAYDREKQKILPFQTLSTRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEP-G----FF 585 (768)
Q Consensus 511 DGElVa~d~~~g~~~pFq~L~~R~rk~~~~~~~~~~v~~~vFDiLylnG~~L~~~Pl~ERr~lL~~l~~~~~-~----~i 585 (768)
|||+|+.. .+|+.|++|.++.... ...+++|+||||||+| .+.||.+||++|++++.+.+ . .+
T Consensus 64 DGElv~~~------~~F~~l~~~~~~~~~~--~~~~~~~~vFDll~l~----~~~pl~eRr~~L~~~~~~~~~~~~~~~i 131 (297)
T 1fvi_A 64 DGEISIEG------ATFQDTTSAVMTGHKM--YNAKFSYYWFDYVTDD----PLKKYIDRVEDMKNYITVHPHILEHAQV 131 (297)
T ss_dssp EEEEECTT------SCHHHHHHHHHSCC------CCEEEEEEEECSSC----TTSCHHHHHHHHHHHHHHCGGGGGCSSE
T ss_pred EEEEEECC------CCHHHHHHHhccCCCC--CccceEEEEEeccCCC----CCCCHHHHHHHHHHHHhhcCCccccceE
Confidence 99999931 5799999998764321 3578999999999998 78999999999999997654 2 78
Q ss_pred EEEe--EEecCCHHHHHHHHHHHHHcCCceeEEeeCCCCCCccCCCCCC----CeEEEccccccccCCcccEEEEEEEcC
Q 004212 586 QFAT--TLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSL----NWLKLKKDYIESIGDSLDLVPIAAFHG 659 (768)
Q Consensus 586 ~l~~--~~~~~~~eei~~~~~~ai~~G~EGlVlK~~~~dS~Y~pGkRs~----~WlKvK~dy~~~~~dtlDlvVIG~~~G 659 (768)
++++ +..+.+.+++.++|++++++|+||||+|++ +|+|++| |+. +|+|+|+++ ++|+||||+++|
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~EGlv~K~~--ds~Y~~G-Rs~~~~g~wlK~K~~~------~~d~vVig~~~g 202 (297)
T 1fvi_A 132 KIIPLIPVEINNITELLQYERDVLSKGFEGVMIRKP--DGKYKFG-RSTLKEGILLKMKQFK------DAEATIISMTAL 202 (297)
T ss_dssp EEEECCCEEECSHHHHHHHHHHHHHTTCCSEEEECT--TCCCCSS-BCCTTTTSSEEECCCE------EEEEEEEEEEES
T ss_pred EEcCcceEecCCHHHHHHHHHHHHHCCCcEEEEECC--CCCcCCC-CCCCCCCCeEEECCCC------CEEEEEEEEEeC
Confidence 9999 888899999999999999999999999999 9999999 888 999999986 899999999999
Q ss_pred ---------------------CCCC-CCccceEEEEEeeCCCCeEEEEEEeccCCCHHHHHHHHHHhccccCCCCCCCcc
Q 004212 660 ---------------------RGKR-TGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYR 717 (768)
Q Consensus 660 ---------------------~Gkr-~g~~gsfLlg~~d~~~g~l~~vgkVGTGfsd~~l~~L~~~l~~~~~~~p~~~~~ 717 (768)
+|++ .|++|+|+|+.. | ++|+|||||||+++++|++.+.+. .
T Consensus 203 ~~~~~~~~~~~~g~~~r~~~~~G~~~~g~~g~ll~~~~----g---~~~~vgtGftd~~~~~l~~~~~p~--------~- 266 (297)
T 1fvi_A 203 FKNTNTKTKDNFGYSKRSTHKSGKVEEDVMGSIEVDYD----G---VVFSIGTGFDADQRRDFWQNKESY--------I- 266 (297)
T ss_dssp CC-------------------CCCTTCCCEEEEEECST----T---CCEEECSSCCHHHHHHHHHTHHHH--------T-
T ss_pred ccccccccccccccccccccCCCcccCCcEEEEEEccC----C---eEEEECCCCCHHHHHHHHhhcCcc--------c-
Confidence 9998 899999999853 4 468999999999999999754321 1
Q ss_pred CCCCCCCcEEecCcceEEEEecceeec
Q 004212 718 FADTISPDVWFEPTERPETSNSPASIV 744 (768)
Q Consensus 718 ~~~~~~pdvWv~P~~V~EV~~aeit~S 744 (768)
..|+||+|.++|.+
T Consensus 267 -------------g~v~ev~~~~~t~~ 280 (297)
T 1fvi_A 267 -------------GKMVKFKYFEMGSK 280 (297)
T ss_dssp -------------TCEEEEEEECC---
T ss_pred -------------CcEEEEEEEEeCCC
Confidence 14899999999865
No 9
>4htp_A DNA ligase 4; helical domain, DNA binding domain, DNA, ligase-HYD complex; HET: DNA; 2.25A {Homo sapiens} PDB: 4hto_A*
Probab=100.00 E-value=5.1e-36 Score=311.44 Aligned_cols=206 Identities=21% Similarity=0.319 Sum_probs=172.1
Q ss_pred CCccchHHHHHHHHHHHhhhchHHHHHHHHHHHHhhhc------CCCCchHHHHHHHhCccCCCcc--ccccCCCHHHHH
Q 004212 188 GERVPFIFLSLVFDMISNETGRILITDIVCNMLRTVME------TTPEDLVPVVYLAANKIAPAHE--GLELGIGDASII 259 (768)
Q Consensus 188 ~~~~~F~~la~l~e~I~~tssr~~k~~iL~~~fr~~i~------~~p~dl~~~vyl~~~~l~P~~e--~~elGIg~~~L~ 259 (768)
+++|||+.||++|++|++|++|++|+++|++||+.++. .+++++...+|+++++++|+|+ +++||||++.|+
T Consensus 11 ~~~~~F~~l~~~~e~Ie~ts~rl~k~~il~~f~~~~~~~~~~l~~~~~~~~~dly~~l~ll~P~~d~~r~~ygi~e~~L~ 90 (240)
T 4htp_A 11 ASHVPFADLCSTLERIQKSKGRAEKIRHFREFLDSWRKFHDALHKNHKDVTDSFYPAMRLILPQLERERMAYGIKETMLA 90 (240)
T ss_dssp GGTSBHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHTTTCSSCCCCSHHHHHHHSGGGCCSSCCCCCCHHHHH
T ss_pred ccCCcHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhccccccCcccCcchHHHHHHHhCccccccccccCCCHHHHH
Confidence 46899999999999999999999999999999999864 3444444455666666789997 559999999999
Q ss_pred HHHHHHhCCCHHHHH-----------HHHhhhCChHHHHhhhcccCCccCCCCCCcHHHHHHHHHHHHHHhCCChHHHHH
Q 004212 260 KALAEACGRTESHVK-----------KQYQEMGDLGLVAKASRSSQSMMRKPDPLTITKVFDTFRLIAKEAGKDSQEKKK 328 (768)
Q Consensus 260 Kal~~a~G~s~~~ik-----------~~y~~~GDlg~vA~~~r~~q~~l~~~~~LTI~eV~~~L~kIA~~~G~~Sq~~K~ 328 (768)
|+|++++|++.+.++ ..|.+.||||+||+++.+++.. .+++|||.+||+.|++||..+|++++++|+
T Consensus 91 Kai~~~~g~~~~~~~~~~L~~wk~~~~~~~~~GDlg~va~~~~~~r~~--~~~~LTv~~V~~~L~~IA~~~g~~s~~~k~ 168 (240)
T 4htp_A 91 KLYIELLNLPRDGKDALKLLNYRTPTGTHGDAGDFAMIAYFVLKPRCL--QKGSLTIQQVNDLLDSIASNNSAKRKDLIK 168 (240)
T ss_dssp HHHHHHTTCCTTSHHHHHHHTC----------CCHHHHHHHHHTTSSC--CSCCCBHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHCCCcchHHHHHHHhccccccccccCCCHHHHHHHHHHccCC--CCCCcCHHHHHHHHHHHHHhhCcccHHHHH
Confidence 999999999987766 6688899999999986544332 237899999999999999999999999999
Q ss_pred HHHHHHHHhcCCChHHHHHHHHhhcccCcccHHHHHHHHHhhhccCCCCCCCCCCCcchHHHHHHHHHHHhhcCCchhhh
Q 004212 329 NRIKALLVAATDCEPQYLIRLLQSKLRIGLAEQTLLAALGQAAVYNEQHSKPPPNIQSPLEEAAKIVKQVFSVLPVYEKI 408 (768)
Q Consensus 329 ~~l~~Ll~~~t~~E~k~lvRiIlkdLRiGi~e~tVl~ala~a~~~~~~~~~~~~~l~~~l~~a~~~vk~~y~~~pd~~~v 408 (768)
.+|..||.+|++.|+|||+|+|+++||||+++++|+.|||.. +.++|+.++|++.|
T Consensus 169 ~~l~~Ll~~~t~~E~k~liRiil~~lriG~~e~~vl~a~h~~------------------------~~~a~~~~~dL~~V 224 (240)
T 4htp_A 169 KSLLQLITQSSALEQKWLIRMIIKDLKLGVSQQTIFSVFHND------------------------AAELHNVTTDLEKV 224 (240)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHTCCCCSSCHHHHHHHHCTT------------------------HHHHHHHHCCHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHhcccccCccHhHHHHHhChh------------------------HHHHHHhhCCHHHH
Confidence 999999999999999999999999999999999999998532 23579999999999
Q ss_pred hhhhhhcCcccc
Q 004212 409 VPALLTDGVWNL 420 (768)
Q Consensus 409 ~~~ll~~g~~~l 420 (768)
+..+. +|...+
T Consensus 225 ~~~l~-~~~~~L 235 (240)
T 4htp_A 225 CRQLH-DPSVGL 235 (240)
T ss_dssp HHHTC-STTSCT
T ss_pred HHHHh-CchhhH
Confidence 98887 554444
No 10
>1p16_A GTP--RNA, mRNA capping enzyme alpha subunit; guanylyltransferase, transcription, capping, CTD, mRNA; HET: SEP G GTP; 2.70A {Candida albicans} SCOP: b.40.4.6 d.142.2.3
Probab=100.00 E-value=3.1e-33 Score=309.90 Aligned_cols=219 Identities=19% Similarity=0.212 Sum_probs=166.9
Q ss_pred cCCCceEEeeecceEeEEEEEe----cCCeEEEEcCCcccCC---CCCchHHHHHHhhcCCCCCCeEEEEEEEEEecCCC
Q 004212 450 FQDMEFTCEYKYDGERAQIHYL----EDGSVEIYSRNAERNT---GKFPDVVLAVSRLKKPSVRSFVLDCEIVAYDREKQ 522 (768)
Q Consensus 450 ~~g~~~~~E~KyDG~R~qih~~----~~g~V~lfSR~g~d~T---~~fPel~~~l~~~~~~~~~~~ILDGElVa~d~~~g 522 (768)
+.+.+|++|+||||+|+|+|+. .++.+.++||+|++++ ..||++.++++.. .....++|||||||+++...
T Consensus 57 l~~~~~~ve~K~DG~R~ll~~~~~~~~g~~v~L~sR~~~~~~i~~~~FP~~~~~~~~~-~~~~~~~vLDGElV~~~~~~- 134 (395)
T 1p16_A 57 LMQKDYFVCEKTDGLRCLLFLINDPDKGEGVFLVTRENDYYFIPNIHFPLSVNETREK-PTYHHGTLLDGELVLENRNV- 134 (395)
T ss_dssp HHHSCEEEEEEECSEEEEEEEEEETTTEEEEEEEETTCCEEECCSCCCCSCTTCCSSS-CCCCSSEEEEEEEEEECCSS-
T ss_pred hCcCCEEEEECccceEEEEEEeecccCCCEEEEEeCCCceEEeccccCCcccccccch-hccCCcceeeeEEEEeccCC-
Confidence 4445799999999999999983 2467999999999965 5899987643210 11236899999999985311
Q ss_pred cccChhhHHhhhhccCCccccccceEEEEeeeeecCCccccCCcHHHHHHHHHHhh-ccC----------------CCeE
Q 004212 523 KILPFQTLSTRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSF-EEE----------------PGFF 585 (768)
Q Consensus 523 ~~~pFq~L~~R~rk~~~~~~~~~~v~~~vFDiLylnG~~L~~~Pl~ERr~lL~~l~-~~~----------------~~~i 585 (768)
.+.+++|+|||||++||++|+++||.+|+++|++++ .+. +-.+
T Consensus 135 --------------------~~~~~~f~~FDlL~~~G~dl~~~pl~eR~~~L~~~i~~~~~~~~~~~~~~~~~~~~pf~v 194 (395)
T 1p16_A 135 --------------------SEPVLRYVIFDALAIHGKCIIDRPLPKRLGYITENVMKPFDNFKKHNPDIVNSPEFPFKV 194 (395)
T ss_dssp --------------------SCCEEEEEEEEEEEETTEECTTSCHHHHHHHHHHHTHHHHHHHHHHCHHHHSCTTSCCEE
T ss_pred --------------------CcceeEEEEEEEEEECCeEcccCCHHHHHHHHHHHhhcccHhhhhcCccccccccCceEE
Confidence 136789999999999999999999999999999965 220 1123
Q ss_pred EEEeEEecCCHHHHHHHHHH--HHHcCCceeEEeeCCCCCCccCCCCCCCeEEEccccccccCCcccEEEEEEEc-----
Q 004212 586 QFATTLTSIDLDEIQKFLDA--AVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFH----- 658 (768)
Q Consensus 586 ~l~~~~~~~~~eei~~~~~~--ai~~G~EGlVlK~~~~dS~Y~pGkRs~~WlKvK~dy~~~~~dtlDlvVIG~~~----- 658 (768)
.+..... ...+.++|+. ++.+|.||||+|+. +|+|.+|+ +.+|+|+|+.+. .|+|+||++++.
T Consensus 195 ~~~~~~~---~~~~~~~~~~~~~~~~g~EGlI~K~~--ds~Y~~Gr-~~~wlKwK~~~~----~TvDfvl~~~~~~~~~~ 264 (395)
T 1p16_A 195 GFKTMLT---SYHADDVLSKMDKLFHASDGLIYTCA--ETPYVFGT-DQTLLKWKPAEE----NTVDFQLEFVFNEVQDP 264 (395)
T ss_dssp EECCCEE---GGGTHHHHTTGGGCSSCEEEEEEEES--SSCCCSEE-EEEEEEECCGGG----CCEEEEEEEECEEEECT
T ss_pred EEecchh---HHHHHHHHHHHHhcCCCCCeEEEEeC--CCCcCCCC-ccceEEEecCCC----eEEEEEEEEEecccccc
Confidence 3333233 3345667766 34589999999999 99999985 569999999764 599999998875
Q ss_pred ---CCCCCCCcc---ce----EEEEEeeCCCCeEEEEEEeccCCCHHHHHHHHHHh
Q 004212 659 ---GRGKRTGVY---GA----FLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSL 704 (768)
Q Consensus 659 ---G~Gkr~g~~---gs----fLlg~~d~~~g~l~~vgkVGTGfsd~~l~~L~~~l 704 (768)
|+|++ +.+ ++ |.|.+|+++ ..++.++++ ||||+++++|.+.+
T Consensus 265 ~~~g~G~~-~~~~dy~~~p~~~~l~v~~~~-~~~~~f~~~--~ltd~e~~~l~~~~ 316 (395)
T 1p16_A 265 DLDERDPT-STYLDYDAKPNLIKLRVWQGS-NVHTDFAKL--DLSDDDWERLKALE 316 (395)
T ss_dssp TSCTTSTT-CEEEECSSCCSEEEEEEECST-TCEEEEEEE--CCCHHHHHHHHHSS
T ss_pred cccccCcc-ccccccccccceeEEEEEeCC-cccceeeEE--EeCHHHHHHhHhhc
Confidence 78877 665 44 788899864 247788887 99999999988654
No 11
>3vnn_A DNA ligase 4; non-homologous END joining, DNA repair, XRCC4; HET: DNA; 2.90A {Homo sapiens}
Probab=99.96 E-value=2.3e-30 Score=247.90 Aligned_cols=132 Identities=30% Similarity=0.410 Sum_probs=103.0
Q ss_pred eEEeeecceEeEEEEEecCCeEEEEcCCcccCCCCCchHHH------HHHhhcCCCCCCeEEEEEEEEEecCCCcccChh
Q 004212 455 FTCEYKYDGERAQIHYLEDGSVEIYSRNAERNTGKFPDVVL------AVSRLKKPSVRSFVLDCEIVAYDREKQKILPFQ 528 (768)
Q Consensus 455 ~~~E~KyDG~R~qih~~~~g~V~lfSR~g~d~T~~fPel~~------~l~~~~~~~~~~~ILDGElVa~d~~~g~~~pFq 528 (768)
|++|+||||+|+|+|+. +|+|++|||||+++|.+||+++. .+.+.+..++.++|||||+|+||+.++ +|.
T Consensus 1 f~~E~K~DG~R~q~~~~-g~~v~l~SR~g~d~t~~fPel~~~~~l~~~i~~~~~~~~~~~iLDGEiv~~d~~~~---~f~ 76 (139)
T 3vnn_A 1 FYIETKLDGERMQMHKD-GDVYKYFSRNGYNYTDQFGASPTEGSLTPFIHNAFKADIQICILDGEMMAYNPNTQ---TFM 76 (139)
T ss_dssp CCCCCCCCCEEEEEEEE-TTEEEEECSSCCBCTTTSCSSTTC--CCSGGGSCCCTTCCEEEEEEEEEEEETTTT---EEC
T ss_pred CEEEEEECeEEEEEEEE-CCEEEEEeCCCCCchhhccchhhhcchhHHHHHHHhccCCceEeeeEEEEecCCCC---CHH
Confidence 68999999999999995 78999999999999999999763 244555545689999999999997654 455
Q ss_pred hHHhhhhccCCccccccceEEEEeeeeecCCccccCCcHHHHHHHHHHhhccCCCeEEEEeE
Q 004212 529 TLSTRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFFQFATT 590 (768)
Q Consensus 529 ~L~~R~rk~~~~~~~~~~v~~~vFDiLylnG~~L~~~Pl~ERr~lL~~l~~~~~~~i~l~~~ 590 (768)
.++++............++||+||||||+||++|+++||.+||++|++++.+.++++++++.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~vFDlL~l~G~~L~~~pl~eRr~~L~~l~~~~~~~~~~~~~ 138 (139)
T 3vnn_A 77 QKGTKFDIKRMVEDSDLQTCYCVFDVLMVNNKKLGHETLRKRYEILSSIFTPIPGRIEIVQK 138 (139)
T ss_dssp CC-------------CCEEEEEEEEEEEETTEECSSSCHHHHHHHHHHHCCCBTTBSCBCCC
T ss_pred HHHhhhhhhhhhhccCceEEEEEEEEEeECCcCcccCCHHHHHHHHHHHhhcCCCeEEEEec
Confidence 55544321111122357899999999999999999999999999999999988888877653
No 12
>1ckm_A MRNA capping enzyme; nucleotidyltransferase; HET: GTP; 2.50A {Paramecium bursaria chlorella virus 1} SCOP: b.40.4.6 d.142.2.3 PDB: 1ckn_A* 1cko_A* 1ckn_B*
Probab=99.96 E-value=3.6e-29 Score=271.25 Aligned_cols=188 Identities=19% Similarity=0.247 Sum_probs=144.3
Q ss_pred CCCceEEeeecceEeEEEEEe---cCCeEEEEcCCcccCCCCCchHHHHHHhhcCCCCCCeEEEEEEEEEecCCCcccCh
Q 004212 451 QDMEFTCEYKYDGERAQIHYL---EDGSVEIYSRNAERNTGKFPDVVLAVSRLKKPSVRSFVLDCEIVAYDREKQKILPF 527 (768)
Q Consensus 451 ~g~~~~~E~KyDG~R~qih~~---~~g~V~lfSR~g~d~T~~fPel~~~l~~~~~~~~~~~ILDGElVa~d~~~g~~~pF 527 (768)
...+|++|+||||+|+|+|++ ++|.+.++||+|+++|..||++.. . ...++|||||||+... ++
T Consensus 73 ~~~~y~ve~K~DG~R~ll~~~~~~g~g~v~L~sR~~~~~t~~fp~~~~----~---~~~~~vLDGElv~~~~-~~----- 139 (330)
T 1ckm_A 73 KQNKYVVSEKTDGIRFMMFFTRVFGFKVCTIIDRAMTVYLLPFKNIPR----V---LFQGSIFDGELCVDIV-EK----- 139 (330)
T ss_dssp HHSCEEEEEEECSEEEEEEEEEETTEEEEEEECTTCCEEECCCSCCCT----T---GGGCEEEEEEEEEETT-TT-----
T ss_pred CcCCEEEEECcceEEEEEEEEecCCCCEEEEEeCCCCEEeccChhhhh----c---cCCCeeEEEEEEEEcC-CC-----
Confidence 345799999999999999985 246899999999999999998631 1 2368999999999531 11
Q ss_pred hhHHhhhhccCCccccccceEEEEeeeeecCCccccCCcHHHHHHHHHHhhccC------CCeEEEEeEEecCCHHHHHH
Q 004212 528 QTLSTRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEE------PGFFQFATTLTSIDLDEIQK 601 (768)
Q Consensus 528 q~L~~R~rk~~~~~~~~~~v~~~vFDiLylnG~~L~~~Pl~ERr~lL~~l~~~~------~~~i~l~~~~~~~~~eei~~ 601 (768)
.++|++||||++||++|+++||.+|+++|++++... +..+.+.+.... +.+++.+
T Consensus 140 ------------------~~~f~vFDlL~~~G~dl~~~pl~eRr~~L~~~l~~~~~~~~~~~~i~~~~~~~~-~~~~~~~ 200 (330)
T 1ckm_A 140 ------------------KFAFVLFDAVVVSGVTVSQMDLASRFFAMKRSLKEFKNVPEDPAILRYKEWIPL-EHPTIIK 200 (330)
T ss_dssp ------------------EEEEEEEEEEEETTEECTTSCHHHHHHHHHHHHTTCCCCTTSSSEEEECCCEET-TCHHHHH
T ss_pred ------------------eEEEEEEeeeeeCCcccccCCHHHHHHHHHHHHhhhcccCCCCeEEEEEEEEeh-hHHHHHH
Confidence 278999999999999999999999999999998631 123555444444 3333333
Q ss_pred HHHHHHHc--CCceeEEeeCCCCCCccCCCCCCCeEEEccccccccCCcccEEEEEEEcCCCCCCCccceEEEEEeeCCC
Q 004212 602 FLDAAVDA--SCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNN 679 (768)
Q Consensus 602 ~~~~ai~~--G~EGlVlK~~~~dS~Y~pGkRs~~WlKvK~dy~~~~~dtlDlvVIG~~~G~Gkr~g~~gsfLlg~~d~~~ 679 (768)
-+..++.+ |.||||+|+. +|+|.+| |+.+|+|+|+.+. .|+|+||++ |+| .+|+++.+.
T Consensus 201 ~~~~~~~~~yg~EGlI~K~~--dspY~~G-r~~~~lKwK~~~~----~tvDfvi~~---g~g---------~~gl~~~~~ 261 (330)
T 1ckm_A 201 DHLKKANAIYHTDGLIIMSV--DEPVIYG-RNFNLFKLKPGTH----HTIDFIIMS---EDG---------TIGIFDPNL 261 (330)
T ss_dssp HHHHHHHHHSCEEEEEEEES--SSCCCCE-EEEEEEEECSTTC----CCEEEEECS---TTC---------CEEEEETTT
T ss_pred HHHHHHhccCCCceEEEeeC--CCcccCC-CccCeEEEEeCCC----ceEEEEEEc---cCC---------eEEEEeCCC
Confidence 33567778 9999999999 9999998 5689999999664 599998882 443 345577655
Q ss_pred CeEEEEEEec
Q 004212 680 EEFQSICKIG 689 (768)
Q Consensus 680 g~l~~vgkVG 689 (768)
|.+++++++.
T Consensus 262 ~~~vp~~~~~ 271 (330)
T 1ckm_A 262 RKNVPVGKLD 271 (330)
T ss_dssp TEEEECCCCS
T ss_pred Cceeeeeeee
Confidence 6788887753
No 13
>3kyh_C MRNA-capping enzyme subunit alpha; 5' modification, triphosphatase, guanylyltransferase, complex, hydrolase, mRNA processing, nucleus; 3.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.2e-24 Score=243.01 Aligned_cols=175 Identities=21% Similarity=0.218 Sum_probs=135.1
Q ss_pred hhcCCCceEEeeecceEeEEEEEec-----CCeEEEEcCCcccCC---CCCchHHHH-----HHhhcCCCCCCeEEEEEE
Q 004212 448 NKFQDMEFTCEYKYDGERAQIHYLE-----DGSVEIYSRNAERNT---GKFPDVVLA-----VSRLKKPSVRSFVLDCEI 514 (768)
Q Consensus 448 ~k~~g~~~~~E~KyDG~R~qih~~~-----~g~V~lfSR~g~d~T---~~fPel~~~-----l~~~~~~~~~~~ILDGEl 514 (768)
+.+...+|++|+||||+|+|+++.. +|.|.++||+++.++ .+||++.+. +.. ...++||||||
T Consensus 60 ~~L~~~dY~V~eK~DGiR~Ll~i~~~~~~g~g~v~LidR~~~~~~v~~~~FP~~~~~~~~~~l~~----~~~~TlLDGEl 135 (461)
T 3kyh_C 60 EKLLAHDYYVCEKTDGLRVLMFIVINPVTGEQGCFMIDRENNYYLVNGFRFPRLPQKKKEELLET----LQDGTLLDGEL 135 (461)
T ss_dssp HTTSSSCEEEEEEECSEEEEEEEEECTTTCCEEEEEECSSSCEEEECCCCCCCCSSCCSSGGGTC----CCCSEEEEEEE
T ss_pred HHhccCCEEEEEcccceEEEEEEeccccCCCceEEEEeCCCCeEEcccccCCcccccchhhhhhc----cCCCeEEEEEE
Confidence 3456678999999999999999862 268999999999996 589987542 222 23689999999
Q ss_pred EEEecCCCcccChhhHHhhhhccCCccccccceEEEEeeeeecCCccccCCcHHHHHHHHHHhhcc--------------
Q 004212 515 VAYDREKQKILPFQTLSTRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEE-------------- 580 (768)
Q Consensus 515 Va~d~~~g~~~pFq~L~~R~rk~~~~~~~~~~v~~~vFDiLylnG~~L~~~Pl~ERr~lL~~l~~~-------------- 580 (768)
|+++. + + ....+++|++||||++||++++++||.+|+++|++++..
T Consensus 136 V~d~~--~----~--------------~~~~~~~y~~FDlL~~~G~dl~~~pl~eR~~~Le~~I~~P~~~~~~~~p~~~~ 195 (461)
T 3kyh_C 136 VIQTN--P----M--------------TKLQELRYLMFDCLAINGRCLTQSPTSSRLAHLGKEFFKPYFDLRAAYPNRCT 195 (461)
T ss_dssp EEEEC--T----T--------------TCCEEEEEEEEEEEEETTEECSSSBHHHHHHHHHHTTHHHHHHHHHHCSTTCS
T ss_pred EeccC--C----C--------------CCccceEEEEEEEEeECCcCcccCCHHHHHHHHHHHhcccchhhhhccccccc
Confidence 99642 1 1 013689999999999999999999999999999988742
Q ss_pred -CCCeEEEEeEEecCCHHHHHHHHHH--HHHcCCceeEEeeCCCCCCccCCCCCCCeEEEccccccccCCcccEEEEE
Q 004212 581 -EPGFFQFATTLTSIDLDEIQKFLDA--AVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIA 655 (768)
Q Consensus 581 -~~~~i~l~~~~~~~~~eei~~~~~~--ai~~G~EGlVlK~~~~dS~Y~pGkRs~~WlKvK~dy~~~~~dtlDlvVIG 655 (768)
.+..+.+...... .++.++|+. ++.+|.||||+|+. +++|.+|+|+.+|+|+|+.+. .|+|++++=
T Consensus 196 ~~pF~V~~K~~~~~---~~~~~l~~~~~~l~~~~EGLv~k~~--~spY~~Ggr~~~~lKwKp~~~----nTVDF~L~i 264 (461)
T 3kyh_C 196 TFPFKISMKHMDFS---YQLVKVAKSLDKLPHLSDGLIFTPV--KAPYTAGGKDSLLLKWKPEQE----NTVDFKLIL 264 (461)
T ss_dssp CCCSEEEECCCEEG---GGHHHHHHHHTTCSSCEEEEEEEES--SSBCCSSSEEEEEEECCCTTT----CCCEEEEEC
T ss_pred cCCcEEEeccchhh---hhHHHHHHhhhhccCCCCeEEEEeC--CCCCcCCCcCCCeEEEEcCCC----eeEEEEEEe
Confidence 0112333222222 345666763 37899999999999 999999889999999999775 499998763
No 14
>3rtx_A MRNA-capping enzyme; guanylyltransferase, RNA polymerase II CTD, lysyl-N-GMP, NUC mRNA capping, transferase; HET: SEP GUN; 2.81A {Mus musculus} PDB: 3s24_A
Probab=99.91 E-value=1.3e-24 Score=236.22 Aligned_cols=167 Identities=19% Similarity=0.226 Sum_probs=119.2
Q ss_pred CCceEEeeecceEeEEEEEecCCeEEEEcCCcccCC---CCCchHHHHHHhhcCCCCCCeEEEEEEEEEecCCCcccChh
Q 004212 452 DMEFTCEYKYDGERAQIHYLEDGSVEIYSRNAERNT---GKFPDVVLAVSRLKKPSVRSFVLDCEIVAYDREKQKILPFQ 528 (768)
Q Consensus 452 g~~~~~E~KyDG~R~qih~~~~g~V~lfSR~g~d~T---~~fPel~~~l~~~~~~~~~~~ILDGElVa~d~~~g~~~pFq 528 (768)
..+|++|+||||+|+|+++..+|+|.++||++++++ .+||++.+. ... ..++|||||||+++. +|
T Consensus 62 ~~~y~v~~K~DG~R~ll~i~~~~~v~L~sR~~~~~~~~~~~FP~~~~~--~~~---~~~tvLDGElV~~~~-~g------ 129 (343)
T 3rtx_A 62 QKPYKVSWKADGTRYMMLIDGTNEVFMIDRDNSVFHVSNLEFPFRKDL--RMH---LSNTLLDGEMIIDKV-NG------ 129 (343)
T ss_dssp HSCEEEEEECCCEEEEEEECSTTCEEEECTTCCEEEETTCCCEETTEE--EEE---CCSEEEEEEEEEEES-SS------
T ss_pred cCCEEEEECCCceEEEEEEEcCCEEEEEeCCCCeEEeccccCCcchhh--hcc---CCCeEEEEEEEEecC-CC------
Confidence 347999999999999999854688999999999985 589997652 112 368999999999863 22
Q ss_pred hHHhhhhccCCccccccceEEEEeeeeecCCccccCCcHHHHHHHHHHhhcc---------------CCCeEEEEeEEec
Q 004212 529 TLSTRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEE---------------EPGFFQFATTLTS 593 (768)
Q Consensus 529 ~L~~R~rk~~~~~~~~~~v~~~vFDiLylnG~~L~~~Pl~ERr~lL~~l~~~---------------~~~~i~l~~~~~~ 593 (768)
...+.|++||+|++||++++++||.+|+++|++.+.. .+-.+++.+.+..
T Consensus 130 ---------------~~~~~~~~FDlL~~~G~dl~~~pl~eR~~~L~~~i~~p~~~~~~~~~~~~~~~pf~vr~K~~~~~ 194 (343)
T 3rtx_A 130 ---------------QAVPRYLIYDIIKFNAQPVGDCDFNIRLQCIEREIISPRHEKMKTGLIDKTQEPFSVRPKQFFDI 194 (343)
T ss_dssp ---------------SEEEEEEEEEEEEBTTBCGGGSCHHHHHHHHHHHTHHHHHHHHHHSSCCTTTSSSEEEECCCEEG
T ss_pred ---------------cEeeEEEEEEEEeECCcCcccCCHHHHHHHHHHHhhhHHHHHhhcccccccCCCcEEEEEEeEeh
Confidence 1246999999999999999999999999999974321 1234666666665
Q ss_pred CCHHHHH-HHHHHHHHcCCceeEEeeCCCCCCccCCCCCCCeEEEccccccccCCcccEEE
Q 004212 594 IDLDEIQ-KFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVP 653 (768)
Q Consensus 594 ~~~eei~-~~~~~ai~~G~EGlVlK~~~~dS~Y~pGkRs~~WlKvK~dy~~~~~dtlDlvV 653 (768)
...+++. .-|..++.+|.||||++.. + +|.+| |+.+|+|+|+.+. .|+|+.+
T Consensus 195 ~~~~~ll~~~~~~~l~~~~dGlIf~~~--~-~Y~~G-~~~~~lKwKp~~~----~tvDF~l 247 (343)
T 3rtx_A 195 NISRKLLEGNFAKEVSHEMDGLIFQPI--G-KYKPG-RCDDILKWKPPSL----NSVDFRL 247 (343)
T ss_dssp GGHHHHSCC----------CEEEEEES--S-CCCCE-EEEEEEEECCSTT----CC-----
T ss_pred hhHHHHHhhhhHhhcCCCCCeEEEEEC--c-cCcCC-CCcceEEEecCcc----eEEEEEE
Confidence 5444432 2346788999999999999 8 99987 7889999999775 4899977
No 15
>2vug_A PAB1020; RNA, ligase, AMPPNP, nucleotidyl- transferase; HET: ANP; 2.9A {Pyrococcus abyssi GE5}
Probab=99.51 E-value=1.6e-13 Score=151.49 Aligned_cols=223 Identities=15% Similarity=0.119 Sum_probs=143.1
Q ss_pred CCceEEeeecceEeEEEEEecCCeEEEEcCCccc--CCC-CCchH-HHHHHhhcCCCCCCeEEEEEEEEEecCCCcccCh
Q 004212 452 DMEFTCEYKYDGERAQIHYLEDGSVEIYSRNAER--NTG-KFPDV-VLAVSRLKKPSVRSFVLDCEIVAYDREKQKILPF 527 (768)
Q Consensus 452 g~~~~~E~KyDG~R~qih~~~~g~V~lfSR~g~d--~T~-~fPel-~~~l~~~~~~~~~~~ILDGElVa~d~~~g~~~pF 527 (768)
...|++|+|+||.|+++++. +|+++++||++.. +|. .+|++ ...+... ..+++||||++.++ .+|
T Consensus 94 ~~~~vvEeKlDG~~v~l~y~-~G~v~a~TRg~g~e~iT~n~i~~wip~~L~~~----~~~l~L~GEvv~~~------~~f 162 (389)
T 2vug_A 94 RGEFYVEEKVDGYNVRVVMY-KGKMLGITRGGFICPFTTERIPDFVPQEFFKD----NPNLILVGEMAGPE------SPY 162 (389)
T ss_dssp SCEEEEEEECCSEEEEEEEE-TTEEEEEETTSCBCHHHHHHGGGTSCTHHHHH----CTTEEEEEEEESSS------CSS
T ss_pred CCeEEEEEeecCcEEEEEEE-CCEEEEEeCCCCCCCCchhhhhHhHHHHHhcC----CCcEEEEEEEEecC------ChH
Confidence 45899999999999999985 7889999999988 543 44552 2223322 25799999998764 245
Q ss_pred hhHHhhhhccCCccccccceEEEEeeeeecCCccccCCcHHHHHHHHHHhhccCCCeEEEEeEEecCCHHHHHHHHHHHH
Q 004212 528 QTLSTRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAV 607 (768)
Q Consensus 528 q~L~~R~rk~~~~~~~~~~v~~~vFDiLylnG~~L~~~Pl~ERr~lL~~l~~~~~~~i~l~~~~~~~~~eei~~~~~~ai 607 (768)
+... . ...+.++.|++|||++.++... .|+.+|+++|+++--+....+.. ....+.+++.++++.+.
T Consensus 163 ~~~n------~--~np~r~l~F~vFDV~~~~~g~~--~s~~er~~~L~~lG~~~vp~~~~---~~~~~~eel~~~i~~~~ 229 (389)
T 2vug_A 163 LVEG------P--PYVKEDIQFFLFDVQEIKTGRS--LPVEERLKIAEEYGINHVEVFGK---YTKDDVDELYQLIERLS 229 (389)
T ss_dssp CSCC------C--TTCCSSCEEEEEEEEETTTCCB--CCHHHHHHHHHHHTCCBCCEEEE---EEGGGHHHHHHHHHHHH
T ss_pred HHhc------c--cCcccCCEEEEEEeeccCCCCc--CCHHHHHHHHHHcCCCCCCeEEE---EcCCCHHHHHHHHHHhc
Confidence 3221 0 1115689999999998863332 78999999999984333333322 23346789999999999
Q ss_pred HcCCceeEEeeCCCC----CCccCCCCCCCe--EEE----------------------ccccccccCCcccEEEEEEEcC
Q 004212 608 DASCEGLIIKTMDRD----ATYEPSKRSLNW--LKL----------------------KKDYIESIGDSLDLVPIAAFHG 659 (768)
Q Consensus 608 ~~G~EGlVlK~~~~d----S~Y~pGkRs~~W--lKv----------------------K~dy~~~~~dtlDlvVIG~~~G 659 (768)
..+.||||+|.. + ..|.. +...| +++ |+...+. ++.++.++|...|
T Consensus 230 ~~~~EGvViK~~--d~~~~lkyt~--~~pr~~dlaiA~Kfp~e~~~~~~~~r~~R~~~~~~e~~~--~~~e~~~~~~~~G 303 (389)
T 2vug_A 230 KEGREGIIMKSP--DMKKIVKYVT--PYANINDIKIGARVFYELPPGYFTSRISRLAFYLAEKRI--KGEEFERVAKELG 303 (389)
T ss_dssp HTTCCEEEEECT--TSCCEEEEEC--HHHHHHHHHHHHTTGGGSCHHHHHHHHHHHHHHHHHTTC--CHHHHHHHHHHHH
T ss_pred CCCCCeEEEEEC--ChhhhcCcee--cCCCCcceEEEEeccccccchhhhhhhhhhhcceecccC--ccHHHHHHHHhcC
Confidence 999999999998 5 33331 11334 333 3211110 2355667777778
Q ss_pred CCCCCCccceEEEEEeeCCCCeEEEEEEeccCCCHHHHHHHHHHhcccc
Q 004212 660 RGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKV 708 (768)
Q Consensus 660 ~Gkr~g~~gsfLlg~~d~~~g~l~~vgkVGTGfsd~~l~~L~~~l~~~~ 708 (768)
+|+..|++|++. .+.+++.=.=...+++ =+.++.+++.+.|+...
T Consensus 304 ~~~~~~~~~ai~-~~~~~~~~~e~~~~~~---~~~~~~~~~~~~~~~~~ 348 (389)
T 2vug_A 304 SALLQPFVESIF-DVEQEEDIHELFKVRV---KRIETAYKMVTHFEKLG 348 (389)
T ss_dssp HHHHHHHHHHHH-HHHTTCCCEEEEEEEE---SCHHHHHHHHHHHHTTS
T ss_pred chhhhhHHHHHH-HHhCCCeEEEEEEEEe---CCHHHHHHHHHHHHHcC
Confidence 877777777653 2222211011123555 35677777777766553
No 16
>3qwu_A DNA ligase; structural genomics, PSI-2, midwest center for structural GE MCSG; HET: DNA ADN; 2.35A {Aquifex aeolicus}
Probab=99.40 E-value=1.4e-12 Score=141.77 Aligned_cols=144 Identities=19% Similarity=0.233 Sum_probs=105.2
Q ss_pred CCceEEeeecceEeEEEEEecCCeEEEEcCCcccC---CCCCchHHH-HHHhhcCCCCCCeEEEEEEEEEecCCCcccCh
Q 004212 452 DMEFTCEYKYDGERAQIHYLEDGSVEIYSRNAERN---TGKFPDVVL-AVSRLKKPSVRSFVLDCEIVAYDREKQKILPF 527 (768)
Q Consensus 452 g~~~~~E~KyDG~R~qih~~~~g~V~lfSR~g~d~---T~~fPel~~-~l~~~~~~~~~~~ILDGElVa~d~~~g~~~pF 527 (768)
..+|++|+|+||+++-+..+ +|++..+||+|..+ |.++|++.+ .+.+- ..+++|||||++-+ -||
T Consensus 72 ~~~~~veEKLDG~NVRi~~~-dG~ilA~TRgG~icP~tT~r~~~~~~~~f~~~----~P~l~LdGEl~g~~------npy 140 (370)
T 3qwu_A 72 EAPFWVEEKVDGYNTRIFKY-GDNYYALSRGGFICPFTTDRLPDLIDLRILDE----NPDLVICAEVAGPE------NPY 140 (370)
T ss_dssp SSCEEEEEECSSEEEEEEEE-TTEEEEECTTSCBCHHHHHHHHHHCCCHHHHH----CTTEEEEEEEECTT------CSS
T ss_pred CCcEEEEEeeCCeEEEEEEE-CCEEEEEcCCCcccCcchhhhhhhcCchhhhc----CCCeEEEEEEEcCC------CCc
Confidence 46899999999999888654 68999999999875 555555432 12222 25899999999742 244
Q ss_pred hhHHhhhhccCCccccccceEEEEeeeeecCCccccCCcHHHHHHHHHHhhccCCCeEEEEeEEecC--CHHHHHHHHHH
Q 004212 528 QTLSTRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFFQFATTLTSI--DLDEIQKFLDA 605 (768)
Q Consensus 528 q~L~~R~rk~~~~~~~~~~v~~~vFDiLylnG~~L~~~Pl~ERr~lL~~l~~~~~~~i~l~~~~~~~--~~eei~~~~~~ 605 (768)
.. + . ......++.|+||||...+ ...-+|+.+|+++|+++-.+ .+.+....... +.+++.+++++
T Consensus 141 ~~-----~-s--~~y~~~~i~F~VFDV~d~~--~~~~L~~~eR~~ll~~~~lp---~V~ii~~~~~~~~~~~~l~~~l~~ 207 (370)
T 3qwu_A 141 IE-----E-S--PPYVKEDVQLFVFDFMKKN--EQGFLSQEEKMELIEKYNLP---HVEILGRFTASEEGIKKIKEILKR 207 (370)
T ss_dssp CS-----C-C--CTTCCSSCEEEEEEEEETT--CCSCCCHHHHHHHHHHHTCC---BCCEEEEECSSHHHHHHHHHHHHH
T ss_pred cc-----c-C--CcccccCceEEEEeCcccc--CCCcCCHHHHHHHHHHCCCC---CccEEEEeCCCCCCHHHHHHHHHH
Confidence 31 0 0 0112468999999999753 23457999999999998544 33445555566 77889999999
Q ss_pred HHHcCCceeEEeeC
Q 004212 606 AVDASCEGLIIKTM 619 (768)
Q Consensus 606 ai~~G~EGlVlK~~ 619 (768)
..+.|.||||+|++
T Consensus 208 l~~~g~EGVVlK~~ 221 (370)
T 3qwu_A 208 FNEEGREGVVFKED 221 (370)
T ss_dssp HHHTTCCEEEEEES
T ss_pred HHhCCCcEEEEecC
Confidence 99999999999999
No 17
>1ta8_A DNA ligase, NAD-dependent; nucleotidyl transferase fold; HET: DNA NMN; 1.80A {Enterococcus faecalis} SCOP: d.142.2.2 PDB: 3ba8_A* 1tae_A* 3ba9_A* 3baa_A* 3bab_A*
Probab=98.19 E-value=1.9e-06 Score=92.97 Aligned_cols=169 Identities=18% Similarity=0.213 Sum_probs=110.7
Q ss_pred ceEEeeecceEeEEEEEecCCe-EEEEcC----CcccCCCCCchHHHHHHhhcCCCCCCeEEEEEEEEEecCCCcccChh
Q 004212 454 EFTCEYKYDGERAQIHYLEDGS-VEIYSR----NAERNTGKFPDVVLAVSRLKKPSVRSFVLDCEIVAYDREKQKILPFQ 528 (768)
Q Consensus 454 ~~~~E~KyDG~R~qih~~~~g~-V~lfSR----~g~d~T~~fPel~~~l~~~~~~~~~~~ILDGElVa~d~~~g~~~pFq 528 (768)
.|+||+|+||..+.+.+ ++|. |+..|| .|+|+|.....|.. |...+. ....+.+.||++.-. ..|.
T Consensus 114 ~~~~EpKiDGlaisL~Y-e~G~Lv~a~TRGDG~~GEDVT~nvrtI~~-IP~~L~-~p~~leVRGEv~m~~------~~F~ 184 (332)
T 1ta8_A 114 AYCCELKIDGLAISLRY-ENGVFVRGATRGDGTVGENITENLRTVRS-VPMRLT-EPISVEVRGECYMPK------QSFV 184 (332)
T ss_dssp CEEEEEEECSEEEEEEE-ETTEEEEEEECTTSSEEEBCHHHHTTCTT-SCSBCS-SCCCEEEEEEEECCH------HHHH
T ss_pred eEEEeeeecceEEEEEE-ECCEEEEEEcCCCCccchhHHHHHHHhcC-CccccC-CCCeEEEEEEEEEEH------HHHH
Confidence 59999999999999998 5787 899999 89999975433321 111121 124589999999742 2455
Q ss_pred hHHhhhh---------------ccCCccc----cccceEEEEeeeeecCCccccCCcHHHHHHHHHHhhccCCCeEEEEe
Q 004212 529 TLSTRAR---------------KNVSLSD----IKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFFQFAT 589 (768)
Q Consensus 529 ~L~~R~r---------------k~~~~~~----~~~~v~~~vFDiLylnG~~L~~~Pl~ERr~lL~~l~~~~~~~i~l~~ 589 (768)
.+-.+.. ......+ ...++.|++|++...+|.. -.+..++.+.|+++--++.....+
T Consensus 185 ~lN~~~~~~g~~~faNPRNaAAGsLrqld~~ita~R~L~ff~y~i~~~~~~~--~~t~~e~l~~L~~~GF~v~~~~~~-- 260 (332)
T 1ta8_A 185 ALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGPMK--AKTQFEALEELSAIGFRTNPERQL-- 260 (332)
T ss_dssp HHHHHHHHTTCCCCSSHHHHHHHHHTCSBHHHHHTSCCEEEEEEESCCTTCC--CSBHHHHHHHHHHTTCCCCTTCEE--
T ss_pred HHHHHHHhcCCccccChHHHHHHHHHccChhhHhhCCCEEEEEecccccCCC--CCCHHHHHHHHHHcCCCCCCcceE--
Confidence 4422110 0001111 2568999999996444433 268999999999986555433333
Q ss_pred EEecCCHHHHHHHHHHHHHc------CCceeEEeeCCCCCCcc----CCCCCCCe---EEEccc
Q 004212 590 TLTSIDLDEIQKFLDAAVDA------SCEGLIIKTMDRDATYE----PSKRSLNW---LKLKKD 640 (768)
Q Consensus 590 ~~~~~~~eei~~~~~~ai~~------G~EGlVlK~~~~dS~Y~----pGkRs~~W---lKvK~d 640 (768)
+.+.+++.++++...+. .-.|||+|-- +-.|. ...|++.| +|+..+
T Consensus 261 ---~~~~~ev~~~~~~~~~~R~~l~y~iDGvViKvn--~~~~q~~LG~tsk~PRWAiAyKfpae 319 (332)
T 1ta8_A 261 ---CQSIDEVWAYIEEYHEKRSTLPYEIDGIVIKVN--EFALQDELGFTVKAPRWAIAYKFPPE 319 (332)
T ss_dssp ---ESSHHHHHHHHHHHHHTGGGSSSCEEEEEEEES--BHHHHHHHCBCSSSBSSEEEEECC--
T ss_pred ---eCCHHHHHHHHHHHHHHHhcCCCCCCcEEEEec--CHHHHHHhCCcCCCCCceeEecCCCc
Confidence 56789999999888654 6799999986 54443 23467788 555543
No 18
>1b04_A Protein (DNA ligase); DNA replication; 2.80A {Geobacillus stearothermophilus} SCOP: d.142.2.2
Probab=98.16 E-value=2.4e-06 Score=91.84 Aligned_cols=169 Identities=18% Similarity=0.221 Sum_probs=110.1
Q ss_pred CceEEeeecceEeEEEEEecCCe-EEEEcC----CcccCCCCCchHHHHHHhhcCCCCCCeEEEEEEEEEecCCCcccCh
Q 004212 453 MEFTCEYKYDGERAQIHYLEDGS-VEIYSR----NAERNTGKFPDVVLAVSRLKKPSVRSFVLDCEIVAYDREKQKILPF 527 (768)
Q Consensus 453 ~~~~~E~KyDG~R~qih~~~~g~-V~lfSR----~g~d~T~~fPel~~~l~~~~~~~~~~~ILDGElVa~d~~~g~~~pF 527 (768)
-.|+||+|+||..+.+.+ ++|. |+..|| .|+|+|.....|.. |...+. ....+.+.||++.-. ..|
T Consensus 107 ~~~~~EpKiDGlaisL~Y-e~G~Lv~a~TRGDG~~GEDVT~nvrtI~~-IP~~L~-~p~~levRGEv~m~~------~~F 177 (318)
T 1b04_A 107 AAYVCELAIDGLAVSVRY-EDGYFVQGATRGDGTTGEDITENLKTIRS-LPLRLK-EPVSLEARGEAFMPK------ASF 177 (318)
T ss_dssp CCEEEEEEESSEEEEEEE-ETTEEEEEEECTTSSCEEBCHHHHHTCTT-SCSBCS-SCCCEEEEEEEECCH------HHH
T ss_pred ceEEEEEecccEEEEEEE-ECCEEEEEEccCCCcccHHHHHhHHHhcC-CCcccC-CCCeEEEEEEEEEEH------HHH
Confidence 359999999999999999 4775 789999 89999975432221 111121 124589999999742 245
Q ss_pred hhHHhhhh-c------c--------CCccc----cccceEEEEeeeeecCCccccCCcHHHHHHHHHHhhccCCCeEEEE
Q 004212 528 QTLSTRAR-K------N--------VSLSD----IKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFFQFA 588 (768)
Q Consensus 528 q~L~~R~r-k------~--------~~~~~----~~~~v~~~vFDiLylnG~~L~~~Pl~ERr~lL~~l~~~~~~~i~l~ 588 (768)
..|-.+.. . + ....+ ...++.|++|++...+|.. -.+..++.+.|+++--++.....+
T Consensus 178 ~~lN~~~~~~g~~~faNpRNaAAGsLrqld~~ita~R~L~ff~y~~~~~~~~~--~~t~~e~l~~L~~~Gf~v~~~~~~- 254 (318)
T 1b04_A 178 LRLNEERKARGEELFANPRNAAAGSLRQLDPKVAASRQLDLFVYGLADAEALG--IASHSEALDYLQALGFKVNPERRR- 254 (318)
T ss_dssp HHHHHHHHHC--CCCSCHHHHHHHHHHSSCHHHHHHTCCEEEEEEETTTTTTT--CCBHHHHHHHHHHTTCCCCTTCEE-
T ss_pred HHHHHHHHHcCCCccchhhHHHHHHHHccChhhHhhCCCEEEEEecccccCCC--CCCHHHHHHHHHHcCCCCCCcceE-
Confidence 55432110 0 0 00111 2468999999995433422 268999999999986555433333
Q ss_pred eEEecCCHHHHHHHHHHHHH------cCCceeEEeeCCCCCCcc----CCCCCCCe---EEEcc
Q 004212 589 TTLTSIDLDEIQKFLDAAVD------ASCEGLIIKTMDRDATYE----PSKRSLNW---LKLKK 639 (768)
Q Consensus 589 ~~~~~~~~eei~~~~~~ai~------~G~EGlVlK~~~~dS~Y~----pGkRs~~W---lKvK~ 639 (768)
+.+.+++.++++...+ ..-+|||+|-- +-.|. ...|++.| +|+..
T Consensus 255 ----~~~~~ev~~~~~~~~~~R~~l~y~iDGvViKvn--~~~~q~~LG~t~k~PRWAiA~Kfpa 312 (318)
T 1b04_A 255 ----CANIDEVIAFVSEWHDKRPQLPYEIDGIVIKVD--SFAQQRALGATAKSPRWAIAYKFPA 312 (318)
T ss_dssp ----ESSHHHHHHHHHHHHHHSTTCSSCEEEEEEEEC--BHHHHHHHCCCSSSCTTEEEEECCC
T ss_pred ----eCCHHHHHHHHHHHHHHHhhCCCCCCcEEEEec--CHHHHHHhCCcCCCCCceeeecCCc
Confidence 5678999999988764 46689999986 54443 23467788 45544
No 19
>1s68_A RNA ligase 2; ribonucleic acid ligase, RNA repair; HET: AMP; 1.90A {Enterobacteria phage T4} SCOP: d.142.2.4
Probab=98.15 E-value=1.9e-05 Score=82.26 Aligned_cols=108 Identities=17% Similarity=0.150 Sum_probs=69.3
Q ss_pred cCCCceEEeeecceEeEEEEEecCCeEEEEcCCcccCCC-C---CchHHH-------HHHhhcC-CCCCCeEEEEEEEEE
Q 004212 450 FQDMEFTCEYKYDGERAQIHYLEDGSVEIYSRNAERNTG-K---FPDVVL-------AVSRLKK-PSVRSFVLDCEIVAY 517 (768)
Q Consensus 450 ~~g~~~~~E~KyDG~R~qih~~~~g~V~lfSR~g~d~T~-~---fPel~~-------~l~~~~~-~~~~~~ILDGElVa~ 517 (768)
+.+.+|++|+|.||..+-|.+. +|++.+.||++..... . +-.+.. .|.+.+. ....+++|-||++..
T Consensus 25 ~~~~~vvvtEKldG~N~~i~~~-~~~i~~~sR~~~l~~~~~f~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~i~GE~~G~ 103 (249)
T 1s68_A 25 LTGGEWVAREKIHGTNFSLIIE-RDKVTCAKRTGPILPAEDFFGYEIILKNYADSIKAVQDIMETSAVVSYQVFGEFAGP 103 (249)
T ss_dssp CSCSCEEEEECCCSEEEEEEEE-SSCEEEEETTEECCTTCCCTTTHHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEEST
T ss_pred cCCCCEEEEEEECCcceEEEEE-CCEEEEEeCCcccCCCCccchHHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEEccc
Confidence 4456899999999999999885 6789999999976321 1 212222 1222221 001579999999963
Q ss_pred ecCCCcccChhhHHhhhhccCCccccccceEEEEeeee-ecCCccccCCcHHHHHHHHHHh
Q 004212 518 DREKQKILPFQTLSTRARKNVSLSDIKVDVCIYAFDIL-YRNGQPLLQEQLRVRREHLYDS 577 (768)
Q Consensus 518 d~~~g~~~pFq~L~~R~rk~~~~~~~~~~v~~~vFDiL-ylnG~~L~~~Pl~ERr~lL~~l 577 (768)
. ..+++.- . +..|++|||. ..++....-++..+|+++++.+
T Consensus 104 ~---------------Iq~~v~Y---~-~~~FyvFdI~~~~~~g~~~~l~~~~~~~l~~~~ 145 (249)
T 1s68_A 104 G---------------IQKNVDY---C-DKDFYVFDIIVTTESGDVTYVDDYMMESFCNTF 145 (249)
T ss_dssp T---------------TSSSCCC---C-SCEEEEEEEEEEETTCCEEECCHHHHHHHHHHH
T ss_pred c---------------ccCCccc---C-CCeEEEEEEEEecCCCccccCCHHHHHHHHHHC
Confidence 2 1111111 1 5599999996 4343222346999999999886
No 20
>2hvq_A ORF1, hypothetical 37.6 kDa protein in GP24-HOC intergenic region; RNA, ligase, lysine adenylate; HET: APK; 2.40A {Enterobacteria phage T4} PDB: 2hvr_A* 2hvs_A*
Probab=98.10 E-value=1.9e-05 Score=85.72 Aligned_cols=108 Identities=14% Similarity=0.119 Sum_probs=69.5
Q ss_pred cCCCceEEeeecceEeEEEEEecCCeEEEEcCCcccCCC-C---CchHHHH----HHhhcCCC----CCCeEEEEEEEEE
Q 004212 450 FQDMEFTCEYKYDGERAQIHYLEDGSVEIYSRNAERNTG-K---FPDVVLA----VSRLKKPS----VRSFVLDCEIVAY 517 (768)
Q Consensus 450 ~~g~~~~~E~KyDG~R~qih~~~~g~V~lfSR~g~d~T~-~---fPel~~~----l~~~~~~~----~~~~ILDGElVa~ 517 (768)
+.+.+|++++|.||..+-+.+. +|++.+.||++..... . |-.+... +.+++..- ..+++|-||++..
T Consensus 26 l~~~~vvvtEKlDG~N~~i~~~-~~~i~~~sR~~~l~~~~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~i~GE~~G~ 104 (335)
T 2hvq_A 26 LTGGEWVAREXIHGTNFSLIIE-RDKVTCAKRTGPILPAEDFFGYEIILKNYADSIKAVQDIMETSAVVSYQVFGEFAGP 104 (335)
T ss_dssp CSCSCEEEEECCSSEEEEEEEE-TTEEEEEETTEECCTTCCCTTTHHHHHHHHHHHHHHHTTHHHHTEEEEEEEEEEESB
T ss_pred cCCCcEEEEEEecCcceEEEEE-CCEEEEecCCcccCCccccchHHHHHHHHHHHHHHHHHHhhccCCCcEEEEEEEccC
Confidence 4456899999999999999885 6789999999975321 1 1112221 22222110 1589999999964
Q ss_pred ecCCCcccChhhHHhhhhccCCccccccceEEEEeeee-ecCCccccCCcHHHHHHHHHHh
Q 004212 518 DREKQKILPFQTLSTRARKNVSLSDIKVDVCIYAFDIL-YRNGQPLLQEQLRVRREHLYDS 577 (768)
Q Consensus 518 d~~~g~~~pFq~L~~R~rk~~~~~~~~~~v~~~vFDiL-ylnG~~L~~~Pl~ERr~lL~~l 577 (768)
. ..+++.- . +..|++|||. ..++.+-.-+|..+|+++++.+
T Consensus 105 ~---------------Iq~~i~Y---~-~~~FyvFDI~~~~~~~~~~~l~~~~~~~l~~~~ 146 (335)
T 2hvq_A 105 G---------------IQKNVDY---G-DKDFYVFDIIVTTESGDVTYVDDYMMESFCNTF 146 (335)
T ss_dssp T---------------TBSSCCC---C-SSEEEEEEEEEEETTCCEEECCHHHHHHHHHHH
T ss_pred c---------------ccCCccc---C-CCeEEEEEEEEecCCCceeeCCHHHHHHHHHHc
Confidence 2 0111111 1 4599999997 3343222347999999999986
No 21
>1zau_A DNA ligase; AMP; HET: DNA AMP; 3.15A {Mycobacterium tuberculosis}
Probab=97.82 E-value=3.4e-06 Score=90.91 Aligned_cols=165 Identities=16% Similarity=0.186 Sum_probs=104.4
Q ss_pred CceEEeeecceEeEEEEEecCCe-EEEEcC----CcccCCCCCchHHHHHHhhc-C-C---CCCCeEEEEEEEEEecCCC
Q 004212 453 MEFTCEYKYDGERAQIHYLEDGS-VEIYSR----NAERNTGKFPDVVLAVSRLK-K-P---SVRSFVLDCEIVAYDREKQ 522 (768)
Q Consensus 453 ~~~~~E~KyDG~R~qih~~~~g~-V~lfSR----~g~d~T~~fPel~~~l~~~~-~-~---~~~~~ILDGElVa~d~~~g 522 (768)
..|+||+|+||..+.+.+ ++|. |+..|| .|+|+|.....|.. |...+ . . ....+.+-||++.-.
T Consensus 116 ~~~~~EpKiDGlaisL~Y-e~G~Lv~a~TRGDG~~GEDVT~nvrtI~~-IP~~L~~g~~~~~p~~leVRGEv~m~~---- 189 (328)
T 1zau_A 116 AHYLCELKIDGVALSLVY-REGRLTRASTRGDGRTGEDVTLNARTIAD-VPERLTPGDDYPVPEVLEVRGEVFFRL---- 189 (328)
T ss_dssp SCEEEEEEECSEEEEEEC-GGGBCCBCBBCTTSSEECBCHHHHHHSSS-CCSBCCCBTTBCCCSCCEEEEEEBCCH----
T ss_pred cceEEeeecceEEEEEEE-ECCEEEEEEccCCCcccHHHHHHHHHhcC-CChhhccCCcCCCCCeEEEEEEEEEEH----
Confidence 369999999999999998 5675 789999 89999875432211 11112 1 0 013489999998642
Q ss_pred cccChhhHHh---------------hhhccCCccc----cccceEEEEeeeeecCCccccCCcHHHHHHHHHHhhccCCC
Q 004212 523 KILPFQTLST---------------RARKNVSLSD----IKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPG 583 (768)
Q Consensus 523 ~~~pFq~L~~---------------R~rk~~~~~~----~~~~v~~~vFDiLylnG~~L~~~Pl~ERr~lL~~l~~~~~~ 583 (768)
..|..|-. .+-......+ .+.++.|++|++...++.. -.+..++.+.|+++--++..
T Consensus 190 --~~F~~lN~~~~~~g~~~faNPRNaAAGsLrqld~~ita~R~L~f~~y~i~~~~~~~--~~t~~e~l~~L~~~Gf~v~~ 265 (328)
T 1zau_A 190 --DDFQALNASLVEEGKAPFANPRNSAAGSLRQKDPAVTARRRLRMICHGLGHVEGFR--PATLHQAYLALRAWGLPVSE 265 (328)
T ss_dssp --HHHHHHHHSCSSTTSCCCSSHHHHHHHHHTCSSHHHHHHSCCBCCCCBCCCCSSCC--CSBHHHHHHHHHTTTCCCCC
T ss_pred --HHHHHHHHHHHHcCCccccChHHHHHHHHHccChhhhhcCcceEEEEeccccCCCC--CCCHHHHHHHHHHcCCCCCC
Confidence 23444321 1100001111 2457999999996555432 25889999999987544322
Q ss_pred eEEEEeEEecCCHHHHHHHHHHHHHc------CCceeEEeeCCCCCCccC----CCCCCCe
Q 004212 584 FFQFATTLTSIDLDEIQKFLDAAVDA------SCEGLIIKTMDRDATYEP----SKRSLNW 634 (768)
Q Consensus 584 ~i~l~~~~~~~~~eei~~~~~~ai~~------G~EGlVlK~~~~dS~Y~p----GkRs~~W 634 (768)
... .+.+.+++.++++...+. .-.|||+|-- +-.|.. ..|++.|
T Consensus 266 ~~~-----~~~~~~ev~~~~~~~~~~R~~l~y~iDGvViKvn--~~~~q~~LG~t~k~PRW 319 (328)
T 1zau_A 266 HTT-----LATDLAGVRERIDYWGEHRHEVDHEIDGVVVKVD--EVALQRRLGSTSRAPRW 319 (328)
T ss_dssp CCC-----CBCHHHHHHHHHHHTTTTCSSCSSCEEEEEEEEC--BHHHHTTSCBCSSSBSS
T ss_pred ceE-----EeCCHHHHHHHHHHHHHHHhcCCCCCceEEEEec--CHHHHHHhCccCCCCCc
Confidence 221 356789999999887554 6689999986 544431 2456677
No 22
>4glw_A DNA ligase; inhibitor, ligase-ligase inhibitor complex; HET: DNA 0XT NMN; 2.00A {Streptococcus pneumoniae}
Probab=97.73 E-value=8.6e-05 Score=79.46 Aligned_cols=151 Identities=17% Similarity=0.177 Sum_probs=96.4
Q ss_pred CCCceEEeeecceEeEEEEEecCCe-EEEEcCC----cccCCCCCchHHHHHHhhcCCCCCCeEEEEEEEEEecCCCccc
Q 004212 451 QDMEFTCEYKYDGERAQIHYLEDGS-VEIYSRN----AERNTGKFPDVVLAVSRLKKPSVRSFVLDCEIVAYDREKQKIL 525 (768)
Q Consensus 451 ~g~~~~~E~KyDG~R~qih~~~~g~-V~lfSR~----g~d~T~~fPel~~~l~~~~~~~~~~~ILDGElVa~d~~~g~~~ 525 (768)
....|+||+|+||.-+.+.+ ++|. ++..||. |+|+|+...-|.. |...++ ....+.+=||++.-. .
T Consensus 100 ~~~~~~~epKiDGlavsL~Y-~~G~L~~a~TRGDG~~GeDiT~n~~tI~~-IP~~l~-~~~~levRGEv~m~~------~ 170 (305)
T 4glw_A 100 AHPTYICELKIDGLSISLTY-EKGILVAGVTRGDGSIGENITENLKRVKD-IPLTLP-EELDITVRGECYMPR------A 170 (305)
T ss_dssp SSCCEEEEEEECSEEEEEEE-ETTEEEEEEECTTSSEEEECHHHHTTSTT-SCSBCS-SCCCEEEEEEEECCH------H
T ss_pred CCCcEEEEeeecceEEEEEE-eCCeEEEEEecCCCcchhhHHHHHhhccC-CcccCC-CcccccccceEEeeh------h
Confidence 45679999999999999998 4777 7899999 9999864322111 111222 235689999999631 2
Q ss_pred ChhhHHh---------------hhhccCCccc----cccceEEEEeeeeecCCccccCCcHHHHHHHHHHhhccCCCeEE
Q 004212 526 PFQTLST---------------RARKNVSLSD----IKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFFQ 586 (768)
Q Consensus 526 pFq~L~~---------------R~rk~~~~~~----~~~~v~~~vFDiLylnG~~L~~~Pl~ERr~lL~~l~~~~~~~i~ 586 (768)
.|..+-. .+-......+ ...++.|++|++..-+|. ....++.+.|.++--.+.....
T Consensus 171 ~F~~~n~~~~~~g~~~faNpRNaaAGslrq~d~~~~~~r~L~f~~y~~~~~~~~----~s~~e~l~~L~~~Gf~~~~~~~ 246 (305)
T 4glw_A 171 SFDQVNQARQENGEPEFANPRNAAAGTLRQLDTAVVAKRNLATFLYQEASPSTR----DSQEKGLKYLEQLGFVVNPKRI 246 (305)
T ss_dssp HHHHHHHHHHHTTCCCCSSHHHHHHHHHSSSBHHHHHHSCCEEEEEEESSSCSS----SBHHHHHHHHHHHTCCCCCCCE
T ss_pred hHHHHHHHHHhcCCccchhhhHHHhhhhhccCchhhhhhcceEEEeeecccccc----chHHHHHHHHHhCCCccCCceE
Confidence 3444321 1100001111 245799999998866653 3678899999887433333322
Q ss_pred EEeEEecCCHHHHHHHHHHHHHc------CCceeEEeeC
Q 004212 587 FATTLTSIDLDEIQKFLDAAVDA------SCEGLIIKTM 619 (768)
Q Consensus 587 l~~~~~~~~~eei~~~~~~ai~~------G~EGlVlK~~ 619 (768)
.+.+.+++.++++...+. .-.|||+|--
T Consensus 247 -----~~~~~~ev~~~~~~~~~~R~~l~y~iDGiVikvn 280 (305)
T 4glw_A 247 -----LAENIDEIWNFIQEVGQERENLPYDIDGVVIKVN 280 (305)
T ss_dssp -----EESSHHHHHHHHHHHHHHGGGSSSCEEEEEEEEC
T ss_pred -----EeCCHHHHHHHHHHHHHHhhcCCCCCCeEEEEEe
Confidence 356788999888876542 2349999964
No 23
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=97.73 E-value=0.00011 Score=84.80 Aligned_cols=220 Identities=16% Similarity=0.195 Sum_probs=133.5
Q ss_pred CceEEeeecceEeEEEEEecCCe-EEEEcC----CcccCCCCCchHHHHHHhhcCC-C-CCCeEEEEEEEEEecCCCccc
Q 004212 453 MEFTCEYKYDGERAQIHYLEDGS-VEIYSR----NAERNTGKFPDVVLAVSRLKKP-S-VRSFVLDCEIVAYDREKQKIL 525 (768)
Q Consensus 453 ~~~~~E~KyDG~R~qih~~~~g~-V~lfSR----~g~d~T~~fPel~~~l~~~~~~-~-~~~~ILDGElVa~d~~~g~~~ 525 (768)
..|+||+|+||.-+.+.+ ++|. ++..|| .|+|+|+...-|.. +...+.. . ...+.+-||++.-. .
T Consensus 108 ~~~~~epKiDGlavsL~Y-e~G~Lv~a~TRGDG~~GeDiT~nvrtI~~-IPl~l~~~~~p~~leVRGEv~m~~------~ 179 (586)
T 4glx_A 108 VTWCCELKLDGLAVSILY-ENGVLVSAATRGDGTTGEDITSNVRTIRA-IPLKLHGENIPARLEVRGEVFLPQ------A 179 (586)
T ss_dssp -CEEEEEEESSEEEEEEE-ETTEEEEEEECTTSSEEEBCHHHHTTCTT-SCSBCCSSSCCSEEEEEEEEECCH------H
T ss_pred ceEEEEEeecceEEEEEE-eCCEEEEEEccCCCcccccHHHHHHhccC-cccccccCCCCceEEEEEEEEEEh------h
Confidence 469999999999999998 4777 899999 68999863211110 1111110 1 13577899998631 2
Q ss_pred ChhhHHhhhh---------------ccCCcc----ccccceEEEEeeeeecCCccccCCcHHHHHHHHHHhhccCCCeEE
Q 004212 526 PFQTLSTRAR---------------KNVSLS----DIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFFQ 586 (768)
Q Consensus 526 pFq~L~~R~r---------------k~~~~~----~~~~~v~~~vFDiLylnG~~L~~~Pl~ERr~lL~~l~~~~~~~i~ 586 (768)
.|..+-.+.. ...... ....++.|++|++...+|.++. ....++.+.|+++--++.....
T Consensus 180 ~F~~ln~~~~~~g~~~faNpRNaaAGslrqld~~~~a~r~L~f~~y~v~~~~~~~~~-~t~~e~l~~L~~~Gf~v~~~~~ 258 (586)
T 4glx_A 180 GFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELP-DTHLGRLLQFKKWGLPVSDRVT 258 (586)
T ss_dssp HHHHHHHHHHHTTCCCCSCHHHHHHHHHTCSCHHHHHTSCCEEEEEEEEEEESSCCC-SBHHHHHHHHHHTTCCCCTTCE
T ss_pred hccccchhhhhccCccchhhHHHHhccccccchhhhhccccceeEeeeeeeeccccc-ccHHHHHHHHHHcCCCCcccee
Confidence 3544322110 000011 1246899999999888776543 4678899999887434333333
Q ss_pred EEeEEecCCHHHHHHHHHHHHHc------CCceeEEeeCCCCCCcc--C--CCCCCCe---EEEccccccccCCcccEEE
Q 004212 587 FATTLTSIDLDEIQKFLDAAVDA------SCEGLIIKTMDRDATYE--P--SKRSLNW---LKLKKDYIESIGDSLDLVP 653 (768)
Q Consensus 587 l~~~~~~~~~eei~~~~~~ai~~------G~EGlVlK~~~~dS~Y~--p--GkRs~~W---lKvK~dy~~~~~dtlDlvV 653 (768)
+ +.+.+++.++++..... --.|||+|-- +-.+. - -.+++.| +|+..+ ...-.|
T Consensus 259 ~-----~~~~~~~~~~~~~~~~~R~~l~y~iDGiVikvn--~~~~~~~lG~ts~~PrwAiA~Kfp~e-------~~~T~v 324 (586)
T 4glx_A 259 L-----CESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVN--SLAQQEQLGFVARAPRWAVAFKFPAQ-------EQMTFV 324 (586)
T ss_dssp E-----ESSHHHHHHHHHHHHHHGGGSSSCEEEEEEEES--BHHHHHHHCBCSSSBSSEEEECCCCC-------EEEEEE
T ss_pred e-----eccHHHHHHHHHHHHHhhhcccccCCceEEEec--chhhhhccCCccCCCCeeEEEcccch-------hheeEe
Confidence 2 56788888888776543 4489999974 32222 1 1356788 555543 444566
Q ss_pred EEEEcCCCCCCCccceEEEEEeeCC--CCeEEEEEEeccCCCHHHHHHHH
Q 004212 654 IAAFHGRGKRTGVYGAFLLACYDSN--NEEFQSICKIGTGFSEAMLEERS 701 (768)
Q Consensus 654 IG~~~G~Gkr~g~~gsfLlg~~d~~--~g~l~~vgkVGTGfsd~~l~~L~ 701 (768)
.+..+.-| |+|.+... +..++- .|. +|.++ |..+.++.+++.
T Consensus 325 ~~I~~qVG-RTG~iTPv--A~lePV~l~G~--tVsra-TLhN~~~I~~~d 368 (586)
T 4glx_A 325 RDVEFQVG-RTGAITPV--ARLEPVHVAGV--LVSNA-TLHNADEIERLG 368 (586)
T ss_dssp EEEEEEEC-TTSBEEEE--EEEEEEEETTE--EEEEE-ECCCHHHHHHHT
T ss_pred EEEEEecC-CceEEEEE--EEEeeEEeCCE--EEEec-ccCCHHHHHhcC
Confidence 66665544 45655543 223331 354 56676 799999988865
No 24
>1xk5_A Snurportin-1; protein-RNA-complex, transport protein; HET: TPG; 2.40A {Homo sapiens}
Probab=97.56 E-value=0.0004 Score=69.99 Aligned_cols=170 Identities=18% Similarity=0.207 Sum_probs=118.0
Q ss_pred ccccccccCChHHHHhhcCCCceEEeeecceEeEEEEEecCCeEEEEcCCcccCCCCCchHHHHHHhhcCCCCCCeEEEE
Q 004212 433 GPMLAKPTKGVSEIVNKFQDMEFTCEYKYDGERAQIHYLEDGSVEIYSRNAERNTGKFPDVVLAVSRLKKPSVRSFVLDC 512 (768)
Q Consensus 433 kPMLA~~~~~i~~il~k~~g~~~~~E~KyDG~R~qih~~~~g~V~lfSR~g~d~T~~fPel~~~l~~~~~~~~~~~ILDG 512 (768)
+.||+.=..++++-+ +.+|++=+-==|.||+|+. .+|....++|+|..+. +|+....-=...-.....-+||||
T Consensus 5 ~lmlsEWl~diP~dl----~~~Wl~vp~P~GkRcLvva-~~G~T~~~~k~G~~~~-~F~S~LPgG~~~~~~~~~~tILDC 78 (204)
T 1xk5_A 5 QLMLSEWLIDVPSDL----GQEWIVVVCPVGKRALIVA-SRGSTSAYTKSGYCVN-RFSSLLPGGNRRNSTAKDYTILDC 78 (204)
T ss_dssp CSEEEEECCSCCTTH----HHHEEEEEEESSEEEEEEE-ETTEEEEECTTSCEEE-EECCSSSSSCSSSCCTTCCEEEEE
T ss_pred chhhhhhcccCCCcc----CCCeEEEECCCCcEEEEEe-cCCeEEEECCCCcEEE-EEcccCCCCCcccCCCCCCEEEEE
Confidence 457776544443322 1378888888999999998 4789999999998642 233210000000000125799998
Q ss_pred EEEEEecCCCcccChhhHHhhhhccCCccccccceEEEEeeeeecCCccccCCcHHHHHHHHHHhhccCC----------
Q 004212 513 EIVAYDREKQKILPFQTLSTRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEP---------- 582 (768)
Q Consensus 513 ElVa~d~~~g~~~pFq~L~~R~rk~~~~~~~~~~v~~~vFDiLylnG~~L~~~Pl~ERr~lL~~l~~~~~---------- 582 (768)
=.. +. .-+|+|.|||.+||.++.+-..+=|.--|++-+.|.+
T Consensus 79 I~~---e~-------------------------~~tyYVLDvl~W~g~~l~dcetefRffWl~skl~E~~~l~~~s~~n~ 130 (204)
T 1xk5_A 79 IYN---EV-------------------------NQTYYVLDVMCWRGHPFYDCQTDFRFYWMHSKLPEEEGLGEKTKLNP 130 (204)
T ss_dssp EEE---GG-------------------------GTEEEEEEEEEETTEECTTSCHHHHHHHHHHHTTTSTTTTSCBTTBS
T ss_pred EEe---cC-------------------------CcEEEEEEEEEECCceeecCcHHHHHHHHHHHhccccccccccccCC
Confidence 543 11 2369999999999999999999999999999887743
Q ss_pred CeEEEEeEEecCCHHHHHHHHHHHHHcCCceeEEeeCCCCCCccCCCCCCCeEEEccc
Q 004212 583 GFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKD 640 (768)
Q Consensus 583 ~~i~l~~~~~~~~~eei~~~~~~ai~~G~EGlVlK~~~~dS~Y~pGkRs~~WlKvK~d 640 (768)
-+|..++...++ .+.+.+++.....--.+|+.+=.. ++.|++|. ++-+.=+|+.
T Consensus 131 ~~f~~lp~~~c~-~~~l~~~~~~~~~~~~DGlLFyHK--~a~Y~~G~-TPLv~WLkp~ 184 (204)
T 1xk5_A 131 FKFVGLKNFPCT-PESLCDVLSMDFPFEVDGLLFYHK--QTHYSPGS-TPLVGWLRPY 184 (204)
T ss_dssp SEEEECCEEECS-HHHHHHHHTCCCSSCEEEEEEEES--SCCCCSEE-EEEEEEECGG
T ss_pred cceEecccccCC-HHHHHHHHccCCCCCcceEEEEec--cccccCCC-CChhhhcchh
Confidence 256677777765 667777776556677899999999 99999994 6554445773
No 25
>3jsl_A DNA ligase; NAD+-dependent, DNA damage, DNA repair, DNA replication, magnesium, manganese, metal-binding, NAD, zinc; HET: DNA; 1.80A {Staphylococcus aureus} SCOP: d.142.2.2 PDB: 3jsn_A*
Probab=97.49 E-value=0.00016 Score=77.60 Aligned_cols=169 Identities=18% Similarity=0.229 Sum_probs=105.1
Q ss_pred CceEEeeecceEeEEEEEecCCe-EEEEcC----CcccCCCCCchHHHHHHhhcCCCCCCeEEEEEEEEEecCCCcccCh
Q 004212 453 MEFTCEYKYDGERAQIHYLEDGS-VEIYSR----NAERNTGKFPDVVLAVSRLKKPSVRSFVLDCEIVAYDREKQKILPF 527 (768)
Q Consensus 453 ~~~~~E~KyDG~R~qih~~~~g~-V~lfSR----~g~d~T~~fPel~~~l~~~~~~~~~~~ILDGElVa~d~~~g~~~pF 527 (768)
.+|+||+|+||.-+-+.+ ++|. |+..|| .|+|+|....-|. .|...+. ....+.+-||++.-- ..|
T Consensus 105 ~~~~~EpKiDGlaisL~Y-e~G~Lv~a~TRGDG~~GEDVT~nvrtI~-~IP~~L~-~~~~levRGEv~m~~------~~F 175 (318)
T 3jsl_A 105 VEYMCELKIDGLAVSLKY-VDGYFVQGLTRGDGTTGEDITENLKTIH-AIPLKMK-EPLNVEVRGEAYMPR------RSF 175 (318)
T ss_dssp CCEEEEEEECSEEEEEEE-ETTEEEEEEECTTSSEEEBCHHHHTTCT-TSCSBCS-SCCCEEEEEEEECCH------HHH
T ss_pred ceEEEEEeecceEEEEEE-ECCEEEEEEeCCCCccchhHHHHHHHhc-CCccccC-CCCcEEEEEEEEEcH------HHH
Confidence 479999999999999998 4776 789999 6899986432211 1111121 124689999998631 234
Q ss_pred hhHHhh---------------hhccCCccc----cccceEEEEeeeeecCCccccCCcHHHHHHHHHHhhccCCCeEEEE
Q 004212 528 QTLSTR---------------ARKNVSLSD----IKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFFQFA 588 (768)
Q Consensus 528 q~L~~R---------------~rk~~~~~~----~~~~v~~~vFDiLylnG~~L~~~Pl~ERr~lL~~l~~~~~~~i~l~ 588 (768)
..+-.+ +-......+ ...++.|++|++...+|.. -....++.+.|+++--++.....+
T Consensus 176 ~~lN~~~~~~g~~~faNPRNaAAGsLRqld~~ita~R~L~ff~y~~~~~~~~~--~~t~~e~l~~L~~~GF~v~~~~~~- 252 (318)
T 3jsl_A 176 LRLNEEKEKNDEQLFANPRNAAAGSLRQLDSKLTAKRKLSVFIYSVNDFTDFN--ARSQSEALDELDKLGFTTNKNRAR- 252 (318)
T ss_dssp HHHHHHHBTTBCCCCSSHHHHHHHHHSCSCHHHHHHSCCEEEEEEESCCTTCC--CSBHHHHHHHHHHHTCCCCTTCEE-
T ss_pred HHHHHHHHHhCCccccChHHHHHHHHHccChhhhhhCcceEEEEecccccCCC--CCCHHHHHHHHHHCCCCcCCcceE-
Confidence 443211 100011111 2468999999998766533 257889999999884443333222
Q ss_pred eEEecCCHHHHHHHHHHHHH------cCCceeEEeeCCCCCCcc----CCCCCCCe---EEEcc
Q 004212 589 TTLTSIDLDEIQKFLDAAVD------ASCEGLIIKTMDRDATYE----PSKRSLNW---LKLKK 639 (768)
Q Consensus 589 ~~~~~~~~eei~~~~~~ai~------~G~EGlVlK~~~~dS~Y~----pGkRs~~W---lKvK~ 639 (768)
+.+.+++.++++...+ -.-.|||+|-- +-.+. .-.|.+.| +|+.+
T Consensus 253 ----~~~~~ev~~~~~~~~~~R~~l~y~iDGvViKvn--~~~~q~~LG~t~k~PRWAiAyKfp~ 310 (318)
T 3jsl_A 253 ----VNNIDGVLEYIEKWTSQRESLPYDIDGIVIKVN--DLDQQDEMGFTQKSPRWAIAYKFPA 310 (318)
T ss_dssp ----ESSHHHHHHHHHHHHHHGGGSSSCEEEEEEEES--BHHHHHHHCBCSSSBTTEEEEECC-
T ss_pred ----eCCHHHHHHHHHHHHHHHhcCCCCCCcEEEEEe--CHHHHHHhCCCCCCCCceEEECCCC
Confidence 5688999999888743 34589999985 43322 12356677 56555
No 26
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=97.48 E-value=0.0007 Score=79.39 Aligned_cols=218 Identities=16% Similarity=0.190 Sum_probs=134.0
Q ss_pred ceEEeeecceEeEEEEEecCCe-EEEEcC----CcccCCCCCchHHHHHHhhcCC-C-CCCeEEEEEEEEEecCCCcccC
Q 004212 454 EFTCEYKYDGERAQIHYLEDGS-VEIYSR----NAERNTGKFPDVVLAVSRLKKP-S-VRSFVLDCEIVAYDREKQKILP 526 (768)
Q Consensus 454 ~~~~E~KyDG~R~qih~~~~g~-V~lfSR----~g~d~T~~fPel~~~l~~~~~~-~-~~~~ILDGElVa~d~~~g~~~p 526 (768)
.|+||+|+||.-+-+.+ ++|. |+..|| .|+|+|....-|.. |...+.. . ...+.+-||++.-. ..
T Consensus 109 ~~~~e~KiDGlaisL~Y-e~G~Lv~a~TRGDG~~GEdvT~n~rtI~~-IP~~l~~~~~p~~levRGEv~m~~------~~ 180 (671)
T 2owo_A 109 TWCCELKLDGLAVSILY-ENGVLVSAATRGDGTTGEDITSNVRTIRA-IPLKLHGENIPARLEVRGEVFLPQ------AG 180 (671)
T ss_dssp CEEEEEEESSEEEEEEE-ETTEEEEEECCTTSSEEEBCHHHHHTCTT-SCSBCCSSSCCSEEEEEEEEECCH------HH
T ss_pred eEEEEEecceEEEEEEE-eCCEEEEEEecCCCcchhhHHHHHhhhcC-CCccccCCCCCCeEEEEEEEEEEH------HH
Confidence 69999999999999998 4776 789999 68888863211110 1111211 0 12388999998632 24
Q ss_pred hhhHHhh-hh--------------ccCCccc----cccceEEEEeeeeecCC-ccccCCcHHHHHHHHHHhhccCCCeEE
Q 004212 527 FQTLSTR-AR--------------KNVSLSD----IKVDVCIYAFDILYRNG-QPLLQEQLRVRREHLYDSFEEEPGFFQ 586 (768)
Q Consensus 527 Fq~L~~R-~r--------------k~~~~~~----~~~~v~~~vFDiLylnG-~~L~~~Pl~ERr~lL~~l~~~~~~~i~ 586 (768)
|..|-.+ .. ......+ ...++.||+|++...+| .. -.+..++.+.|+++-=++....+
T Consensus 181 F~~lN~~~~~~g~~~faNpRNaaAGsLrqld~~~~a~R~L~~~~y~~~~~~~~~~--~~t~~e~l~~L~~~Gf~v~~~~~ 258 (671)
T 2owo_A 181 FEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL--PDTHLGRLLQFKKWGLPVSDRVT 258 (671)
T ss_dssp HHHHHHHHHHSSCCCCSCHHHHHHHHHTCSCHHHHHTSCCEEEEEEEEEEESSCC--CSBHHHHHHHHHHHTCCCCTTCE
T ss_pred HHHHHHHHHhcCCCcccChHHHHHHHHHhcChhhHhcCCCEEEEEECcccCCCCC--CCCHHHHHHHHHHCCCCCCCcce
Confidence 5544211 10 0001111 25689999999965554 32 25888999999998555443333
Q ss_pred EEeEEecCCHHHHHHHHHHHHH------cCCceeEEeeCCCCCCcc----CCCCCCCe---EEEccccccccCCcccEEE
Q 004212 587 FATTLTSIDLDEIQKFLDAAVD------ASCEGLIIKTMDRDATYE----PSKRSLNW---LKLKKDYIESIGDSLDLVP 653 (768)
Q Consensus 587 l~~~~~~~~~eei~~~~~~ai~------~G~EGlVlK~~~~dS~Y~----pGkRs~~W---lKvK~dy~~~~~dtlDlvV 653 (768)
+ +.+.+++.++++...+ ..-.|||+|-- +-.+. .-.|.+.| +|+..+ ...-.+
T Consensus 259 ~-----~~~~~~v~~~~~~~~~~R~~l~y~iDGvViKv~--~~~~q~~LG~t~k~PrWAiA~Kfpae-------~~~T~l 324 (671)
T 2owo_A 259 L-----CESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVN--SLAQQEQLGFVARAPRWAVAFKFPAQ-------EQMTFV 324 (671)
T ss_dssp E-----ESSHHHHHHHHHHHHHHGGGSSSCEEEEEEEES--BHHHHHHHCBCSSSBSSEEEEECCCC-------EEEEEE
T ss_pred e-----eCCHHHHHHHHHHHHHHHhcCCCCCccEEEEec--CHHHHHHhCcccCCCCceEEEcCCCc-------eEEEEE
Confidence 3 5678999999888743 35589999975 33322 12467888 777764 344455
Q ss_pred EEEEcCCCCCCCccceEEEEEeeCC--CCeEEEEEEeccCCCHHHHHHHH
Q 004212 654 IAAFHGRGKRTGVYGAFLLACYDSN--NEEFQSICKIGTGFSEAMLEERS 701 (768)
Q Consensus 654 IG~~~G~Gkr~g~~gsfLlg~~d~~--~g~l~~vgkVGTGfsd~~l~~L~ 701 (768)
.+..+.-| |+|.+... |..++- .|. +|.++ |-.+.++.+++.
T Consensus 325 ~~I~~qVG-RTG~iTPv--A~lePV~l~G~--tVsrA-TLHN~d~i~~~d 368 (671)
T 2owo_A 325 RDVEFQVG-RTGAITPV--ARLEPVHVAGV--LVSNA-TLHNADEIERLG 368 (671)
T ss_dssp EEEEEEEC-TTSBEEEE--EEEEEEEETTE--EEEEE-ECCSHHHHHHHT
T ss_pred EEEEEecC-CCceeeeE--EEEEeEEECCE--EEEec-cCCCHHHHHHcC
Confidence 55554444 56666543 333331 354 55665 678888887764
No 27
>3uq8_A DNA ligase; adenylated protein, ATP-grAsp, rossman fold, adenylation; HET: DNA NAD AMP; 1.70A {Haemophilus influenzae} PDB: 3pn1_A* 3bac_A*
Probab=97.29 E-value=0.0003 Score=75.68 Aligned_cols=171 Identities=19% Similarity=0.240 Sum_probs=105.5
Q ss_pred CceEEeeecceEeEEEEEecCCe-EEEEcC----CcccCCCCCchHHHHHHhhcCC--CCCCeEEEEEEEEEecCCCccc
Q 004212 453 MEFTCEYKYDGERAQIHYLEDGS-VEIYSR----NAERNTGKFPDVVLAVSRLKKP--SVRSFVLDCEIVAYDREKQKIL 525 (768)
Q Consensus 453 ~~~~~E~KyDG~R~qih~~~~g~-V~lfSR----~g~d~T~~fPel~~~l~~~~~~--~~~~~ILDGElVa~d~~~g~~~ 525 (768)
-.|+||+|+||.-+-+.+ ++|. |+..|| .|+|+|....-|. .|...+.. ....+.+-||++.-. .
T Consensus 107 ~~~~~EpKiDGlaisL~Y-e~G~Lv~a~TRGDG~~GEDVT~nvrtI~-~IPl~L~~~~~p~~leVRGEv~m~~------~ 178 (322)
T 3uq8_A 107 LTFCCEPKLDGLAVSILY-VNGELTQAATRGDGTTGEDITANIRTIR-NVPLQLLTDNPPARLEVRGEVFMPH------A 178 (322)
T ss_dssp CEEEEEEEESSEEEEEEE-ETTEEEEEEECTTSSEEEBCHHHHHTCT-TSCSBCSCSSCCSEEEEEEEEECCH------H
T ss_pred ceEEEEEeeceEEEEEEE-eCCEEEEEEecCCCccchhHHHHHHHhc-CCCccccCCCCCceEEEEEEEEeeH------H
Confidence 369999999999999998 4777 789999 6899986421111 01111111 013478999998632 2
Q ss_pred ChhhHHhhhh---------------ccCCccc----cccceEEEEeeeeecCCccccCCcHHHHHHHHHHhhccCCCeEE
Q 004212 526 PFQTLSTRAR---------------KNVSLSD----IKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFFQ 586 (768)
Q Consensus 526 pFq~L~~R~r---------------k~~~~~~----~~~~v~~~vFDiLylnG~~L~~~Pl~ERr~lL~~l~~~~~~~i~ 586 (768)
.|..+-.+.. ......+ ...++.||+|++...+|..+ ..+..++.+.|+++--++.....
T Consensus 179 ~F~~lN~~~~~~g~~~faNPRNaAAGsLRqld~~ita~R~L~ff~y~~~~~~~~~~-~~t~~e~l~~L~~~Gf~v~~~~~ 257 (322)
T 3uq8_A 179 GFERLNKYALEHNEKTFANPRNAAAGSLRQLDPNITSKRPLVLNAYGIGIAEGVDL-PTTHYARLQWLKSIGIPVNPEIR 257 (322)
T ss_dssp HHHHHHHHHHHTTCCCCSSHHHHHHHHHTCSCHHHHTTSCCEEEEEEEEEEESCCC-CSBHHHHHHHHHHTTCCCCTTCE
T ss_pred HHHHHHHHHHHhCCccccchhHHHHHHHhhcChhhhhcCccEEEEEeccccCCCCC-CCCHHHHHHHHHHcCCCCCCCcE
Confidence 3554421110 0000111 24679999999987766432 35789999999988444433333
Q ss_pred EEeEEecCCHHHHHHHHHHHHHc------CCceeEEeeCCCCCCccC----CCCCCCe---EEEcc
Q 004212 587 FATTLTSIDLDEIQKFLDAAVDA------SCEGLIIKTMDRDATYEP----SKRSLNW---LKLKK 639 (768)
Q Consensus 587 l~~~~~~~~~eei~~~~~~ai~~------G~EGlVlK~~~~dS~Y~p----GkRs~~W---lKvK~ 639 (768)
+ +.+.+++.++++...+. .-.|||+|-- +-.+.. -.|.+.| +|+.+
T Consensus 258 ~-----~~~~~ev~~~~~~~~~~R~~l~y~iDGvViKvn--~~~~q~~LG~t~k~PRWAiA~Kfpa 316 (322)
T 3uq8_A 258 L-----CNGADEVLGFYRDIQNKRSSLGYDIDGTVLKIN--DIALQNELGFISKAPRWAIAYKFPA 316 (322)
T ss_dssp E-----EESHHHHHHHHHHHHHTTTTTSSCEEEEEEEES--BHHHHHHHCEETTEETTEEEEECCC
T ss_pred E-----eCCHHHHHHHHHHHHHHHhcCCCCCCeEEEEec--CHHHHHHcCccCCCCCceEEEcCCc
Confidence 3 45789999999887543 4479999975 333321 1345677 55554
No 28
>1xdn_A RNA editing ligase MP52; HET: MSE ATP; 1.20A {Trypanosoma brucei} SCOP: d.142.2.4
Probab=97.21 E-value=0.002 Score=67.41 Aligned_cols=180 Identities=19% Similarity=0.261 Sum_probs=99.4
Q ss_pred CCCceEEeeecceEeEEEEEe-cCCe--EEEEcCCcccC-CCCC-------chHHHHHH---hhcC-----CCCCCeEEE
Q 004212 451 QDMEFTCEYKYDGERAQIHYL-EDGS--VEIYSRNAERN-TGKF-------PDVVLAVS---RLKK-----PSVRSFVLD 511 (768)
Q Consensus 451 ~g~~~~~E~KyDG~R~qih~~-~~g~--V~lfSR~g~d~-T~~f-------Pel~~~l~---~~~~-----~~~~~~ILD 511 (768)
.+.+|++.+|.||...-+.+. +++. |++.+|++..- ++.| +++...++ +.+. .....+++=
T Consensus 31 ~~~ewvatEKIHGaNFsii~~~d~~~~~i~~akRs~~l~~~e~FfGy~~i~~~l~~~~~~l~~~l~~~~~~~~~~~v~Vy 110 (277)
T 1xdn_A 31 AAQEWVACEKVHGTNFGIYLINQGDHEVVRFAKRSGIMDPNENFFGYHILIDEFTAQIRILNDLLKQKYGLSRVGRLVLN 110 (277)
T ss_dssp GGSCEEEEEECCSEEEEEEEEEETTEEEEEEEETTEECCTTCCCTTGGGGHHHHHHHHHHHHHHHHHHHTCSCCSEEEEE
T ss_pred CCCcEEEEEeeccccEEEEEecCCCeeEEEEeecccccCcccccccHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEE
Confidence 345899999999999988772 2455 99999998542 2222 44433222 2221 235789999
Q ss_pred EEEEEEecCC--------------CcccChhhHHhhhhccCCccccccceEEEEeeeeecCC---ccccCCcHHHHHHHH
Q 004212 512 CEIVAYDREK--------------QKILPFQTLSTRARKNVSLSDIKVDVCIYAFDILYRNG---QPLLQEQLRVRREHL 574 (768)
Q Consensus 512 GElVa~d~~~--------------g~~~pFq~L~~R~rk~~~~~~~~~~v~~~vFDiLylnG---~~L~~~Pl~ERr~lL 574 (768)
||+..|.-.. .+..|+.. +.+.+.+ ...-..+..|+||||.+.++ ++...++|.+=.+.+
T Consensus 111 GELfGg~y~hp~v~~~~~~~~~~~~~~~p~~~--~~IQ~~i-~~~Y~p~~~FYaFDI~~~~~~~~~~~~~L~fd~~~~~~ 187 (277)
T 1xdn_A 111 GELFGAKYKHPLVPKSEKWCTLPNGKKFPIAG--VQIQREP-FPQYSPELHFFAFDIKYSVSGAEEDFVLLGYDEFVEFS 187 (277)
T ss_dssp EEEEEEECCCTTSCCCCCEEECTTSCEEEGGG--CCSCCCS-SCCCEEEEEEEEEEEEEESSCCGGGEEECCHHHHHHHH
T ss_pred EEEecCccCCccccccccccccCccccCcccc--ccccccc-ccccCCCceEEEEEEEEecCCCccccccCCHHHHHHHH
Confidence 9999875100 00011100 0000111 00011268999999998752 234568888777766
Q ss_pred HHhhccCCCeEEEEeEEecCCHHHHHHHHHH----H------------HHcCCceeEEeeCCCCC---CccCCCCCCCeE
Q 004212 575 YDSFEEEPGFFQFATTLTSIDLDEIQKFLDA----A------------VDASCEGLIIKTMDRDA---TYEPSKRSLNWL 635 (768)
Q Consensus 575 ~~l~~~~~~~i~l~~~~~~~~~eei~~~~~~----a------------i~~G~EGlVlK~~~~dS---~Y~pGkRs~~Wl 635 (768)
.+. .+ +..++.....+.+++.++=.. . ..+=+||+|+|.. .. .|.++. ...-+
T Consensus 188 ~~~----~g-l~~ap~L~rGt~~e~~~~~~~~f~s~ip~~~g~~~~~~~~NiaEGvViKp~--~~g~~~~~~~g-~r~ii 259 (277)
T 1xdn_A 188 SKV----PN-LLYARALVRGTLDECLAFDVENFMTPLPALLGLGNYPLEGNLAEGVVIRHV--RRGDPAVEKHN-VSTII 259 (277)
T ss_dssp HTS----TT-CEECCCSEEESHHHHHTCCGGGCBCSHHHHTTCTTSCCTTCBCCEEEEEET--TTTCHHHHTTC-CCCEE
T ss_pred HHh----cC-CCeeeeeeecCHHHHhhcccccccccchhhcCCCccCCCCCeeeeEEEeec--ccCCcccccCC-CeeEE
Confidence 654 22 123332222334443331111 0 1122899999997 42 455443 45899
Q ss_pred EEcccc
Q 004212 636 KLKKDY 641 (768)
Q Consensus 636 KvK~dy 641 (768)
|.|.+-
T Consensus 260 K~K~~k 265 (277)
T 1xdn_A 260 KLRCSS 265 (277)
T ss_dssp EEECHH
T ss_pred EEeChh
Confidence 999864
No 29
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=97.04 E-value=0.0014 Score=76.84 Aligned_cols=216 Identities=17% Similarity=0.181 Sum_probs=131.5
Q ss_pred ceEEeeecceEeEEEEEecCCeEEEEcC----CcccCCCCCchHHHHHHhhcCCCCCCeEEEEEEEEEecCCCcccChhh
Q 004212 454 EFTCEYKYDGERAQIHYLEDGSVEIYSR----NAERNTGKFPDVVLAVSRLKKPSVRSFVLDCEIVAYDREKQKILPFQT 529 (768)
Q Consensus 454 ~~~~E~KyDG~R~qih~~~~g~V~lfSR----~g~d~T~~fPel~~~l~~~~~~~~~~~ILDGElVa~d~~~g~~~pFq~ 529 (768)
.|+||+|+||.-+ +.+ ++|. +..|| .|+|+|....-|.. |...+......+.+-||++.-. ..|..
T Consensus 110 ~~~~e~KiDGlai-L~Y-e~G~-~a~TRGDG~~GedvT~n~rtI~~-iP~~l~~~p~~levRGEv~m~~------~~F~~ 179 (667)
T 1dgs_A 110 LYTVEHKVDGLSV-LYY-EEGV-WSTGSGDGEVGEEVTQNLLTIPT-IPRRLKGVPDRLEVRGEVYMPI------EAFLR 179 (667)
T ss_dssp EEEEEECCSCEEE-EEE-ETTE-EEEEECSSSEEEBCTGGGTSSTT-SCSBCSSCCSEEEEEEEEECCH------HHHHH
T ss_pred eEEEEEccceeEE-EEE-cCCC-EEEeeCCCcchhhHHHHHhhhcC-CCcccCCCCCeEEEEEEEEEEH------HHHHH
Confidence 4999999999999 888 5888 99999 78999985433221 1112221113478999998632 24555
Q ss_pred HHhh-hh------cc--------CCccc----cccce--EEEEeeeee-cCCccccCCcHHHHHHHHHHhhccCCCeEEE
Q 004212 530 LSTR-AR------KN--------VSLSD----IKVDV--CIYAFDILY-RNGQPLLQEQLRVRREHLYDSFEEEPGFFQF 587 (768)
Q Consensus 530 L~~R-~r------k~--------~~~~~----~~~~v--~~~vFDiLy-lnG~~L~~~Pl~ERr~lL~~l~~~~~~~i~l 587 (768)
|-.+ .. .| ....+ ...++ .||+|++++ .++.. -.+..++.+.|+++-=++....++
T Consensus 180 lN~~~~~~g~~~faNpRNaaAGsLrqld~~~~a~r~L~~~~~~y~~~~~~~~~~--~~t~~e~l~~L~~~Gf~v~~~~~~ 257 (667)
T 1dgs_A 180 LNEELEERGEKVFKNPRNAAAGSLRQKDPRVTAKRGLRATFYALGLGLGLEESG--LKSQYELLLWLKEKGFPVEHCYEK 257 (667)
T ss_dssp HHHHHHHHTCCCCSSHHHHHHHHHSCSSHHHHHHSCCEEECCCBCTTTTTTSCC--CCBHHHHHHHHHHTTCCCCSCEEE
T ss_pred HHHHHHhcCCCcccChHHHHHHHHHhcChhhhhhCCCCCEEEEEEeeccCCCCC--CCCHHHHHHHHHHCCCCCCccceE
Confidence 4211 00 00 01111 14577 999999852 23322 258889999999885454443333
Q ss_pred EeEEecCCHHHHHHHHHHHHH------cCCceeEEeeCCCCCCcc----CCCCCCCe---EEEccccccccCCcccEEEE
Q 004212 588 ATTLTSIDLDEIQKFLDAAVD------ASCEGLIIKTMDRDATYE----PSKRSLNW---LKLKKDYIESIGDSLDLVPI 654 (768)
Q Consensus 588 ~~~~~~~~~eei~~~~~~ai~------~G~EGlVlK~~~~dS~Y~----pGkRs~~W---lKvK~dy~~~~~dtlDlvVI 654 (768)
+.+.+++.++++...+ ..-.|||+|-- +-.+. .-.|.+.| +|+..+ ...-.+.
T Consensus 258 -----~~~~~~v~~~~~~~~~~R~~l~y~iDGvViKv~--~~~~q~~LG~t~k~PrWAiA~Kfpae-------~~~T~l~ 323 (667)
T 1dgs_A 258 -----ALGAEGVEEVYRRGLAQRHALPFEADGVVLKLD--DLTLWGELGYTARAPRFALAYKFPAE-------EKETRLL 323 (667)
T ss_dssp -----EEHHHHHHHHHHHHHHTTTTSSSCCCEEEEEES--BTHHHHHSCBCSSCBSSEEEEECCCC-------CEEEEEE
T ss_pred -----eCCHHHHHHHHHHHHHHHhcCCCCCCcEEEEec--CHHHHHHhCcccCCCCceEEecCCCc-------eEEEEEE
Confidence 4568899999888764 35689999975 43332 12367888 777764 3444555
Q ss_pred EEEcCCCCCCCccceEEEEEeeCC--CCeEEEEEEeccCCCHHHHHHHH
Q 004212 655 AAFHGRGKRTGVYGAFLLACYDSN--NEEFQSICKIGTGFSEAMLEERS 701 (768)
Q Consensus 655 G~~~G~Gkr~g~~gsfLlg~~d~~--~g~l~~vgkVGTGfsd~~l~~L~ 701 (768)
+..+.-| |+|.+... |..++- .|. +|.++ |-.+.++.+++.
T Consensus 324 ~I~~qVG-RTG~iTPv--A~lePV~l~G~--tVsrA-tLhN~d~i~~~d 366 (667)
T 1dgs_A 324 DVVFQVG-RTGRVTPV--GVLEPVFIEGS--EVSRV-TLHNESYIEELD 366 (667)
T ss_dssp EEEEEEC-TTSBEEEE--EEEEEEEETTE--EEEEE-ECCSHHHHHHTT
T ss_pred EEEEecC-CCceeeeE--EEEEeEEECCE--EEEEc-ccCCHHHHHHcC
Confidence 5555444 56666543 333331 354 45565 677777776654
No 30
>4e6n_A Metallophosphoesterase; RNA repair, RNA ligase, ligase-activating, protein binding; HET: AMP; 2.39A {Clostridium thermocellum} PDB: 4drf_A* 3ty9_A* 3ty8_A* 3ty5_A*
Probab=96.92 E-value=0.0059 Score=66.16 Aligned_cols=166 Identities=17% Similarity=0.241 Sum_probs=106.8
Q ss_pred CceEEeeecceEeEEEEEec------------CC-eEEEEcCCcccCCCCCchHHH----HHHhhc------CC-CCCCe
Q 004212 453 MEFTCEYKYDGERAQIHYLE------------DG-SVEIYSRNAERNTGKFPDVVL----AVSRLK------KP-SVRSF 508 (768)
Q Consensus 453 ~~~~~E~KyDG~R~qih~~~------------~g-~V~lfSR~g~d~T~~fPel~~----~l~~~~------~~-~~~~~ 508 (768)
...+||.|.=|-|+.+.+-. +| .=.+|+|+|..+-+. +++.+ .++..+ .. ..+=+
T Consensus 81 ~~VVCEeKHMGSRAVv~vcRd~~~A~~rFGv~~g~~G~~yTRTGR~FF~d-~~l~~~ll~rlr~a~~~aglw~~l~tdWl 159 (427)
T 4e6n_A 81 GKVVCEQKHMGSRAVVIVCKDSQVAEKRFGVLDGTAGICYTRTGRHFFDD-MQLEAELIDRVRKVLDKSGFWGDFNTDWV 159 (427)
T ss_dssp CEEEEEECCCSEEEEEEEESSHHHHHHHHCCCSSCSEEEECTTSCBSCSC-HHHHHHHHHHHHHHHHHHTHHHHTTCSEE
T ss_pred ceEEeccccCCcceEEEEEcCHHHHHHhcCCCCCCcceeEecCCccccCC-chhHHHHHHHHHHHHHhcchHHHhCCcEE
Confidence 47999999999999776532 12 347999999987542 34332 222211 10 23557
Q ss_pred EEEEEEEEEecCCCcc--------------------------------------------cChhhHHhhhhccCC-----
Q 004212 509 VLDCEIVAYDREKQKI--------------------------------------------LPFQTLSTRARKNVS----- 539 (768)
Q Consensus 509 ILDGElVa~d~~~g~~--------------------------------------------~pFq~L~~R~rk~~~----- 539 (768)
.||||++-|+-+.+.. ++-..|..|.+....
T Consensus 160 ~LD~ELmPWSaKA~~Lir~QYA~VgaA~~a~l~~a~~~L~~A~~~~~~~~~~~~~~~~rg~dv~~Ll~r~~~r~~~~~~y 239 (427)
T 4e6n_A 160 CLDCELMPWSAKAQKLLEEQYSAVGISGRVVLDEAVKLLKQASLNKTVSFDVSRQTSGKNADINELLQRFTERSEMMQKY 239 (427)
T ss_dssp EEEEEEECTHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHTC-----------CEECCHHHHHHHHHHHHHHHHHH
T ss_pred EeecccCCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccccccccccccCCCHHHHHHHHHHHHHHHHHH
Confidence 8999999997422110 111112111110000
Q ss_pred ---------ccccccceEEEEeeeeecCCccccCCcHHHHHHHHHHhhccCCC-----eEEEEeEEecCCHHHHHHHHHH
Q 004212 540 ---------LSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPG-----FFQFATTLTSIDLDEIQKFLDA 605 (768)
Q Consensus 540 ---------~~~~~~~v~~~vFDiLylnG~~L~~~Pl~ERr~lL~~l~~~~~~-----~i~l~~~~~~~~~eei~~~~~~ 605 (768)
.-+.-..+.+--|-||-..|....+.|-.--.+.+..+....++ +..++......+.++...++.+
T Consensus 240 ~~AYr~YcWpv~gl~~~rlAPF~iLA~eg~~~~~~~H~WHm~~~~rl~~~d~~l~~~T~~~~VDl~d~~s~~~a~~WW~~ 319 (427)
T 4e6n_A 240 VEAYRKYCWPVNSIDDLKLAPFHILATEGKVHSDKNHIWHMDTIAKYCTQDDSLIMATNHILVDVTDAESVDKGIKWWED 319 (427)
T ss_dssp HHHHHTTCCCCSSGGGCEEEEEEEEEETTEECTTSCHHHHHHHHHHHHSTTCTTBCCCCEEEEETTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCcCceeecchhhhhcccccccCCChHHHHHHHHHHHhcCccceeccccEEeeCCCHHHHHHHHHHHHH
Confidence 00123478999999999999999999999888888888765543 3334433233345677889999
Q ss_pred HHHcCCceeEEeeC
Q 004212 606 AVDASCEGLIIKTM 619 (768)
Q Consensus 606 ai~~G~EGlVlK~~ 619 (768)
..+.|.||+|+|..
T Consensus 320 lT~~GgEGMVVKP~ 333 (427)
T 4e6n_A 320 LTASGGEGMVVKPY 333 (427)
T ss_dssp HHHTTCCEEEEEES
T ss_pred HhcCCCceeEecch
Confidence 99999999999998
No 31
>3gjx_B Snurportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Homo sapiens} PDB: 3nby_B* 3nbz_B* 3nc0_B* 3gb8_B 2qna_B
Probab=96.88 E-value=0.0034 Score=67.71 Aligned_cols=168 Identities=19% Similarity=0.216 Sum_probs=116.4
Q ss_pred ccccccccCChHHHHhhcCCCceEEeeecceEeEEEEEecCCeEEEEcCCcccCC---CCCchHHHHHHhhcCCCCCCeE
Q 004212 433 GPMLAKPTKGVSEIVNKFQDMEFTCEYKYDGERAQIHYLEDGSVEIYSRNAERNT---GKFPDVVLAVSRLKKPSVRSFV 509 (768)
Q Consensus 433 kPMLA~~~~~i~~il~k~~g~~~~~E~KyDG~R~qih~~~~g~V~lfSR~g~d~T---~~fPel~~~l~~~~~~~~~~~I 509 (768)
+.||+.-.-++++-+ +.+|++=+===|.||+|+. ..|....++|+|..+. ...|.=...-.. .-.-+|
T Consensus 106 qlMlsEWl~dvP~dL----~~~W~~vpcPvGkRcLVVa-s~G~T~aysk~G~~l~~F~S~LPGG~~~~s~----~~~~TI 176 (365)
T 3gjx_B 106 QLMLSEWLIDVPSDL----GQEWIVVVCPVGKRALIVA-SRGSTSAYTKSGYCVNRFSSLLPGGNRRNST----AKDYTI 176 (365)
T ss_dssp CSEEEEECCSCCTTH----HHHEEEEEEESSEEEEEEE-ETTEEEEECTTCCEEEEECCSSTTTCC--------CCCCEE
T ss_pred hHHHHHhcccCCccc----ccCeeEEeccCCcEEEEEe-cCceEEEECCCCCEEeeeCCCCCCCCccccC----CCCCEE
Confidence 468876544443222 2368888888899999998 4789999999996642 222321100000 125799
Q ss_pred EEEEEEEEecCCCcccChhhHHhhhhccCCccccccceEEEEeeeeecCCccccCCcHHHHHHHHHHhhccCC-------
Q 004212 510 LDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEP------- 582 (768)
Q Consensus 510 LDGElVa~d~~~g~~~pFq~L~~R~rk~~~~~~~~~~v~~~vFDiLylnG~~L~~~Pl~ERr~lL~~l~~~~~------- 582 (768)
|||=. +.. .-+|+|.|||.++|.++.+-...-|.-.|++-+.+.+
T Consensus 177 LDCIy---~e~-------------------------~~tyYVLDVL~W~g~~l~dCeteFRffWl~SKL~E~~~l~e~s~ 228 (365)
T 3gjx_B 177 LDCIY---NEV-------------------------NQTYYVLDVMCWRGHPFYDCQTDFRFYWMHSKLPEEEGLGEKTK 228 (365)
T ss_dssp EEEEE---ETT-------------------------TTEEEEEEEEEETTEECTTSCHHHHHHHHHHHGGGSTTTTSCCS
T ss_pred EEEEe---ecC-------------------------CceEEEEEEeeeCCcccccCchHHHHHHHHHHhhhccccccccc
Confidence 99853 321 2379999999999999999999999999999887642
Q ss_pred ---CeEEEEeEEecCCHHHHHHHHHHHHHcCCceeEEeeCCCCCCccCCCCCCCeEEEccccc
Q 004212 583 ---GFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYI 642 (768)
Q Consensus 583 ---~~i~l~~~~~~~~~eei~~~~~~ai~~G~EGlVlK~~~~dS~Y~pGkRs~~WlKvK~dy~ 642 (768)
-.|..++...++ .+.+.+.+..-..--.+||.+=.. .+.|.+|. ++-+.=+|+ ||
T Consensus 229 ~np~~Fv~lp~~~C~-~esL~~~ls~~~pfe~DGLLFYHK--~ahY~~G~-TPLVgWLkP-yM 286 (365)
T 3gjx_B 229 LNPFKFVGLKNFPCT-PESLCDVLSMDFPFEVDGLLFYHK--QTHYSPGS-TPLVGWLRP-YM 286 (365)
T ss_dssp SCCSEEEECCEEECC-HHHHHHHTTCCCSSCEEEEEEEET--TCCCCSEE-EEEEEEECH-HH
T ss_pred CCCCceeccCCCCcC-HHHHHHHhccCCCCccceEEEEec--cccccCCC-Cccceecch-hh
Confidence 245556677664 466666665555556889999999 99999994 665555566 54
No 32
>2c5u_A RNA ligase, T4 RNA ligase 1; nucleotidyl transferase, ATP-binding; HET: APC; 2.21A {Bacteriophage T4}
Probab=96.88 E-value=0.0068 Score=66.61 Aligned_cols=141 Identities=14% Similarity=0.133 Sum_probs=88.0
Q ss_pred CceEEeeecceEeEEEEEecCCeEEEEcCCcccCCC-----------CCchHHHHHHhhcCCCCCCeEEEEEEEEEecCC
Q 004212 453 MEFTCEYKYDGERAQIHYLEDGSVEIYSRNAERNTG-----------KFPDVVLAVSRLKKPSVRSFVLDCEIVAYDREK 521 (768)
Q Consensus 453 ~~~~~E~KyDG~R~qih~~~~g~V~lfSR~g~d~T~-----------~fPel~~~l~~~~~~~~~~~ILDGElVa~d~~~ 521 (768)
.++.++.|.||.-+.+.. .+|++.+.||++-.... .+.++.+.+..++. .++++-||++.-. .
T Consensus 93 ~pv~V~eK~DGslv~~~~-~~G~l~~~SKgs~~~~~a~~~~~~l~~~~~~~l~~~~~~l~~---~~~t~~fE~~~pe--n 166 (375)
T 2c5u_A 93 DVDYILTKEDGSLVSTYL-DGDEILFKSKGSIKSEQALMANGILMNINHHRLRDRLKELAE---DGFTANFEFVAPT--N 166 (375)
T ss_dssp GEEEEEEECCSEEEEEEE-ETTEEEEEETTBSSSHHHHHHHHHHHSGGGHHHHHHHHHHHH---TTEEEEEEEECTT--S
T ss_pred CCEEEEEecCCeEEEEEE-ECCEEEEEeCCCCCChHHHHHHHHHhhhcchHHHHHHHHhcC---CCCEEEEEEcCCC--C
Confidence 479999999999976665 58999999999854211 11112222333333 5799999999632 1
Q ss_pred CcccChhhHHhhhhccCCccccccceEEEEeeeeecC-CccccCCcHHHHHHHHHHhhccCCCeEEEEeEEecCCHHHHH
Q 004212 522 QKILPFQTLSTRARKNVSLSDIKVDVCIYAFDILYRN-GQPLLQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQ 600 (768)
Q Consensus 522 g~~~pFq~L~~R~rk~~~~~~~~~~v~~~vFDiLyln-G~~L~~~Pl~ERr~lL~~l~~~~~~~i~l~~~~~~~~~eei~ 600 (768)
.-.+.+ ....+++|||..-+ |+- +|+.++.++.+ +--+....+. .+ +.
T Consensus 167 ~hVl~Y-----------------~~~~L~L~~i~~n~tg~~---l~~~e~~~~a~-~g~~~V~~~~------~~----l~ 215 (375)
T 2c5u_A 167 RIVLAY-----------------QEMKIILLNVRENETGEY---ISYDDIYKDAT-LRPYLVERYE------ID----SP 215 (375)
T ss_dssp CSSSCC-----------------SSCEEEEEEEEETTTCCB---CCHHHHHHCTT-TGGGBCCEEE------CS----ST
T ss_pred ceeccC-----------------CCCCEEEEEEEEcCCCcE---ecHHHHHHHHh-hCCCcCceee------cc----HH
Confidence 111111 12569999998765 444 79999987766 3222222222 11 23
Q ss_pred HHHHHH-HHcCCceeEEeeCCCCCCccCCCCCCCeEEEcccc
Q 004212 601 KFLDAA-VDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDY 641 (768)
Q Consensus 601 ~~~~~a-i~~G~EGlVlK~~~~dS~Y~pGkRs~~WlKvK~dy 641 (768)
++++.+ -..+.||+|++.. + | .++|+|.++
T Consensus 216 ell~~~~~~~~~EGfVir~~--~-----g----~~~K~Kt~~ 246 (375)
T 2c5u_A 216 KWIEEAKNAENIEGYVAVMK--D-----G----SHFKIKSDW 246 (375)
T ss_dssp HHHHHHHHCSSCCEEEEEET--T-----S----CEEEEECHH
T ss_pred HHHHHHhhCCCCceEEEEec--C-----C----CEEEEecHH
Confidence 333332 2578999999997 4 2 499999854
No 33
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=96.81 E-value=0.00078 Score=78.07 Aligned_cols=197 Identities=18% Similarity=0.227 Sum_probs=115.9
Q ss_pred ceEEeeecceEeEEEEEecCCe-EEEEcC----CcccCCCCCchHHHHHHhhcCCC-----CCCeEEEEEEEEEec----
Q 004212 454 EFTCEYKYDGERAQIHYLEDGS-VEIYSR----NAERNTGKFPDVVLAVSRLKKPS-----VRSFVLDCEIVAYDR---- 519 (768)
Q Consensus 454 ~~~~E~KyDG~R~qih~~~~g~-V~lfSR----~g~d~T~~fPel~~~l~~~~~~~-----~~~~ILDGElVa~d~---- 519 (768)
+|+||+|+||.-+-+.+ ++|+ |+..|| .|+|+|....-|. .|...+... ...+.+-||++.-..
T Consensus 117 ~~~~EpKiDGlavsL~Y-e~G~Lv~a~TRGDG~~GEDVT~nvrtI~-~IP~~L~~~~~~~~p~~levRGEv~m~~~~F~~ 194 (615)
T 3sgi_A 117 HYLCELKIDGVALSLVY-REGRLTRASTRGDGRTGEDVTLNARTIA-DVPERLTPGDDYPVPEVLEVRGEVFFRLDDFQA 194 (615)
T ss_dssp CEEEEEEECSEEEEEEE-ETTEEEEEECCTTSSSCBCCHHHHHSCS-SSCSSCCCCSSCCCCSEEEEEEEEECCHHHHHH
T ss_pred eEEEEEEecceEEEEEE-ECCEEEEEEecCCCcchhhHHHHHHhhc-CcchhhcCCcccCCCCeEEEEEEEEEeHHHHHH
Confidence 69999999999999998 5777 789999 7888886321110 011111110 134889999986320
Q ss_pred ------CCCcccChhhHHhhhhccCCccc----cccceEEEEeeeeecCCccccCCcHHHHHHHHHHhhccCCCeEEEEe
Q 004212 520 ------EKQKILPFQTLSTRARKNVSLSD----IKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFFQFAT 589 (768)
Q Consensus 520 ------~~g~~~pFq~L~~R~rk~~~~~~----~~~~v~~~vFDiLylnG~~L~~~Pl~ERr~lL~~l~~~~~~~i~l~~ 589 (768)
+.|+ .+|..-.+.+-......+ .+.++.||+|++...+|.. -....++.+.|.++--++....
T Consensus 195 lN~~~~~~g~-~~faNpRNaAAGsLRqld~~ita~R~L~~f~y~~~~~~~~~--~~t~~e~l~~L~~~Gf~v~~~~---- 267 (615)
T 3sgi_A 195 LNASLVEEGK-APFANPRNSAAGSLRQKDPAVTARRRLRMICHGLGHVEGFR--PATLHQAYLALRAWGLPVSEHT---- 267 (615)
T ss_dssp HHTTCSSSSS-CCCSSHHHHHHHHHTCSSTTHHHHSCCEEEEEEEEEEESCC--CSBTTTHHHHHHHTTCCCCCCC----
T ss_pred HHHHHHHcCC-CcCCChHHHHHHHHHcCChhhHhhCcceEEEEeccccCCCC--CcCHHHHHHHHHHCCCCCCCCe----
Confidence 0111 123222221100011111 2468999999998766533 2356788889988743332221
Q ss_pred EEecCCHHHHHHHHHHHH------HcCCceeEEeeCCCCCCcc----CCCCCCCe---EEEccccccccCCcccEEEEEE
Q 004212 590 TLTSIDLDEIQKFLDAAV------DASCEGLIIKTMDRDATYE----PSKRSLNW---LKLKKDYIESIGDSLDLVPIAA 656 (768)
Q Consensus 590 ~~~~~~~eei~~~~~~ai------~~G~EGlVlK~~~~dS~Y~----pGkRs~~W---lKvK~dy~~~~~dtlDlvVIG~ 656 (768)
..+.+.+++.++++... ...-.|||+|-- +-.+. .-.|.+.| +|+..+ ...-.|.+.
T Consensus 268 -~~~~~~~ev~~~~~~~~~~R~~l~y~iDGvViKvn--~~~~q~~lG~t~k~PRWAiA~Kfpae-------e~~T~l~~I 337 (615)
T 3sgi_A 268 -TLATDLAGVRERIDYWGEHRHEVDHEIDGVVVKVD--EVALQRRLGSTSRAPRWAIAYKYPPE-------EAQTKLLDI 337 (615)
T ss_dssp -CCBSSHHHHHHHHTTTTTSGGGSSSCEEEEEEEES--BHHHHHHHCBCSSSBSSEEEEECCCS-------EEEEECCEE
T ss_pred -EeeCCHHHHHHHHHHHHHHhhcCCCCCCeEEEEec--CHHHHHHhCCCCCCCCceEEEcCCCc-------eeEEEEEEE
Confidence 23678899999987763 345689999985 43332 12367889 777775 333445555
Q ss_pred EcCCCCCCCccceE
Q 004212 657 FHGRGKRTGVYGAF 670 (768)
Q Consensus 657 ~~G~Gkr~g~~gsf 670 (768)
.+.-| |+|.+...
T Consensus 338 ~~qVG-RTG~iTPv 350 (615)
T 3sgi_A 338 RVNVG-RTGRITPF 350 (615)
T ss_dssp CCCBC-SSSCBCCB
T ss_pred EEecC-CCceeeEE
Confidence 55444 45666543
No 34
>3gde_A DNA ligase; DNA-binding domain, adenylation domain, OB-fold domain, ATP-binding, cell cycle, cell division, DNA damage, DNA recombination; HET: DNA; 2.30A {Archaeoglobus fulgidus}
Probab=94.79 E-value=0.097 Score=60.33 Aligned_cols=91 Identities=25% Similarity=0.318 Sum_probs=78.9
Q ss_pred CccchHHHHHHHHHHHhhhc---hHHHHHHHHHHHHhhhcCCCCchHHHHHHHhCccCCCccccccCCCHHHHHHHHHHH
Q 004212 189 ERVPFIFLSLVFDMISNETG---RILITDIVCNMLRTVMETTPEDLVPVVYLAANKIAPAHEGLELGIGDASIIKALAEA 265 (768)
Q Consensus 189 ~~~~F~~la~l~e~I~~tss---r~~k~~iL~~~fr~~i~~~p~dl~~~vyl~~~~l~P~~e~~elGIg~~~L~Kal~~a 265 (768)
.++.-.++-+.|++|+..++ ..+|.++|..+|..+ ++.+.-+.+.++++. ...|+++.++..||+++
T Consensus 113 ~~ltv~~V~~~L~~la~~~g~~s~~~k~~~l~~l~~~~---~~~E~~~l~rli~~~-------lRiG~~~~~vl~ala~a 182 (558)
T 3gde_A 113 EELTVRKVRETFDEIASLTGEGSMKRKIMLLTGLYGLA---TPLEARYLTRLILNE-------MRLGVGEGIMRDAIARA 182 (558)
T ss_dssp CCCBHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHHC---CHHHHHHHHHHHTTC-------CCSSCCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHhC---CHHHHHHHHHHHhcc-------ccccccHHHHHHHHHHH
Confidence 46778899999999998775 478899999999886 889998889998875 45899999999999999
Q ss_pred hCCCHHHHHHHHhhhCChHHHHhh
Q 004212 266 CGRTESHVKKQYQEMGDLGLVAKA 289 (768)
Q Consensus 266 ~G~s~~~ik~~y~~~GDlg~vA~~ 289 (768)
++++.+.++..|....|++.|+..
T Consensus 183 ~~~~~~~~~~~~~~~~dl~~v~~~ 206 (558)
T 3gde_A 183 FRADPETVERAYMITNDLGRVAVV 206 (558)
T ss_dssp TTCCHHHHHHHHHHHCCHHHHHHH
T ss_pred hCCCHHHHHHHhccCCchHHHHHH
Confidence 999999999999999999887753
No 35
>2hiv_A Thermostable DNA ligase; ATP-dependent, open conformation; 2.05A {Sulfolobus solfataricus} PDB: 2hix_A*
Probab=93.62 E-value=0.12 Score=60.36 Aligned_cols=93 Identities=17% Similarity=0.276 Sum_probs=71.9
Q ss_pred CCCcHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCCChHHHHHHHHhhcc--------cCcccHHHHHHHHHhhhc
Q 004212 301 DPLTITKVFDTFRLIAKEAGKDSQEKKKNRIKALLVAATDCEPQYLIRLLQSKL--------RIGLAEQTLLAALGQAAV 372 (768)
Q Consensus 301 ~~LTI~eV~~~L~kIA~~~G~~Sq~~K~~~l~~Ll~~~t~~E~k~lvRiIlkdL--------RiGi~e~tVl~ala~a~~ 372 (768)
.++...++.+.|++|+..+ +...|.++|.++|..+++++..|.++++++.| +.|++++++.++++.++.
T Consensus 19 ~~~~f~~~~~~~~~l~~t~---~r~~k~~~l~~~~~~~~~~d~~~~~~ll~~~l~P~~~~~~~~gi~~~~L~k~~~~~~g 95 (621)
T 2hiv_A 19 SHMEFKVIAEYFDKLEKIS---SRLQLTALLADLLSKSDKTIIDKVVYIIQGKLWPDFLGYPELGIGEKFLIKAISIATN 95 (621)
T ss_dssp --CBTHHHHHHHHHHHHCC---CHHHHHHHHHHHHHTSCGGGHHHHHHHTTTCSSCGGGCCCCCCCCHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHHhcc---CHHHHHHHHHHHHHhcCchHHHHHHHHHhCCcCcccccccccCCCHHHHHHHHHHHHC
Confidence 5678889999999997754 55678999999999999999999999999876 789999999999999877
Q ss_pred cCCCCCCCCCCCcchHHHHHHHHHHHhhcCCchhhhhhhhh
Q 004212 373 YNEQHSKPPPNIQSPLEEAAKIVKQVFSVLPVYEKIVPALL 413 (768)
Q Consensus 373 ~~~~~~~~~~~l~~~l~~a~~~vk~~y~~~pd~~~v~~~ll 413 (768)
.+.. .+++.|...-|++.++..++
T Consensus 96 ~~~~-----------------~~~~~~~~~GDlg~~a~~~~ 119 (621)
T 2hiv_A 96 TDEN-----------------SVENLYKTIGDLGEVARRLK 119 (621)
T ss_dssp CCHH-----------------HHHHHHHHHCCHHHHHHHHH
T ss_pred cCHH-----------------HHHHHHHhcCCHHHHHHHHH
Confidence 5431 22344555556666655554
No 36
>2cfm_A Thermostable DNA ligase; protein-nucleotide complex, cell cycle, cell division, DNA damage, DNA recombination, DNA repair, DNA replication; HET: AMP; 1.8A {Pyrococcus furiosus} PDB: 3rr5_A*
Probab=93.25 E-value=0.24 Score=57.02 Aligned_cols=91 Identities=15% Similarity=0.203 Sum_probs=79.0
Q ss_pred CccchHHHHHHHHHHHhhhc---hHHHHHHHHHHHHhhhcCCCCchHHHHHHHhCccCCCccccccCCCHHHHHHHHHHH
Q 004212 189 ERVPFIFLSLVFDMISNETG---RILITDIVCNMLRTVMETTPEDLVPVVYLAANKIAPAHEGLELGIGDASIIKALAEA 265 (768)
Q Consensus 189 ~~~~F~~la~l~e~I~~tss---r~~k~~iL~~~fr~~i~~~p~dl~~~vyl~~~~l~P~~e~~elGIg~~~L~Kal~~a 265 (768)
.+++-.++-+.|++|+..++ +.+|.++|..+|..+ ++.+.-+.+.++++. ...|+++.++.+||+++
T Consensus 109 ~~ltv~~V~~~L~~la~~~g~~s~~~k~~~l~~ll~~~---~~~e~~~l~rli~~~-------lriG~~~~~vl~ala~a 178 (561)
T 2cfm_A 109 QPLTIKRVYQTLVKVAETTGEGSQDKKVKYLADLFMDA---EPLEAKYLARTILGT-------MRTGVAEGLLRDAIAMA 178 (561)
T ss_dssp CCCBHHHHHHHHHHHHHCCSSSHHHHHHHHHHHHHTTC---CHHHHHHHHHHHHTC-------CCCCCCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC---CHHHHHHHHHHHhcc-------ccccccHHHHHHHHHHH
Confidence 46778899999999999775 467899999999886 889998999998875 35899999999999999
Q ss_pred hCCCHHHHHHHHhhhCChHHHHhh
Q 004212 266 CGRTESHVKKQYQEMGDLGLVAKA 289 (768)
Q Consensus 266 ~G~s~~~ik~~y~~~GDlg~vA~~ 289 (768)
++.+...++..|...+|++.++..
T Consensus 179 ~~~~~~~v~~~~~~~~~l~~v~~~ 202 (561)
T 2cfm_A 179 FHVKVELVERAYMLTSDFGYVAKI 202 (561)
T ss_dssp TTCCHHHHHHHHHHHCCHHHHHHH
T ss_pred hcCCHHHHHHHHccCCCHHHHHHH
Confidence 999999999999999999988754
No 37
>1x9n_A DNA ligase I; 5'-adenylated nicked DNA, protein-DNA complex, L complex; HET: DNA DOC AMP; 3.00A {Homo sapiens} SCOP: a.235.1.1 b.40.4.6 d.142.2.1
Probab=90.87 E-value=0.43 Score=56.28 Aligned_cols=92 Identities=16% Similarity=0.141 Sum_probs=72.5
Q ss_pred CCCCcHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHh---cCCChHHHHHHHHhhcc-------cCcccHHHHHHHHHh
Q 004212 300 PDPLTITKVFDTFRLIAKEAGKDSQEKKKNRIKALLVA---ATDCEPQYLIRLLQSKL-------RIGLAEQTLLAALGQ 369 (768)
Q Consensus 300 ~~~LTI~eV~~~L~kIA~~~G~~Sq~~K~~~l~~Ll~~---~t~~E~k~lvRiIlkdL-------RiGi~e~tVl~ala~ 369 (768)
..++...++.+.+.+|++. .+...|.++|.++|.. ++++|.-|.+.++++.| .+||+++++.++++.
T Consensus 53 ~~~~~~~~la~~~~~i~~t---~~r~~k~~~l~~~~~~~~~~~~~dl~~~v~ll~g~l~P~~~~~elgi~~~~L~k~i~~ 129 (688)
T 1x9n_A 53 GQKVPYLAVARTFEKIEEV---SARLRMVETLSNLLRSVVALSPPDLLPVLYLSLNHLGPPQQGLELGVGDGVLLKAVAQ 129 (688)
T ss_dssp TSCCBHHHHHHHHHHHHTC---CCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHTCSSCGGGCCCCCCCHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHhc---cCHHHHHHHHHHHHHHhhcCChHHHHHHHHHHcCCCCccccccccCcChHHHHHHHHH
Confidence 3678899999999999654 4677889999999999 79999999999999775 479999999999999
Q ss_pred hhccCCCCCCCCCCCcchHHHHHHHHHHHhhcCCchhhhhhh
Q 004212 370 AAVYNEQHSKPPPNIQSPLEEAAKIVKQVFSVLPVYEKIVPA 411 (768)
Q Consensus 370 a~~~~~~~~~~~~~l~~~l~~a~~~vk~~y~~~pd~~~v~~~ 411 (768)
++..+.. .+++.|...-|++.++..
T Consensus 130 ~~g~~~~-----------------~~~~~~~~~GDlg~va~~ 154 (688)
T 1x9n_A 130 ATGRQLE-----------------SVRAEAAEKGDVGLVAEN 154 (688)
T ss_dssp HHTCCHH-----------------HHHHHHHHHTCHHHHTCC
T ss_pred HHCcCHH-----------------HHHHHHHhcCCHHHHHHH
Confidence 9875421 234556666666666543
No 38
>4htp_A DNA ligase 4; helical domain, DNA binding domain, DNA, ligase-HYD complex; HET: DNA; 2.25A {Homo sapiens} PDB: 4hto_A*
Probab=89.45 E-value=0.84 Score=46.92 Aligned_cols=86 Identities=12% Similarity=0.201 Sum_probs=69.5
Q ss_pred CccchHHHHHHHHHHHhhh---chHHHHHHHHHHHHhhhcCCCCchHHHHHHHhCccCCCccccccCCCHHHHHHHHHHH
Q 004212 189 ERVPFIFLSLVFDMISNET---GRILITDIVCNMLRTVMETTPEDLVPVVYLAANKIAPAHEGLELGIGDASIIKALAEA 265 (768)
Q Consensus 189 ~~~~F~~la~l~e~I~~ts---sr~~k~~iL~~~fr~~i~~~p~dl~~~vyl~~~~l~P~~e~~elGIg~~~L~Kal~~a 265 (768)
.++.-.++-+.|++|+..+ +...|.++|..+|+.+ ++.|.-+.+.++++.+ ..|+++.++..++
T Consensus 141 ~~LTv~~V~~~L~~IA~~~g~~s~~~k~~~l~~Ll~~~---t~~E~k~liRiil~~l-------riG~~e~~vl~a~--- 207 (240)
T 4htp_A 141 GSLTIQQVNDLLDSIASNNSAKRKDLIKKSLLQLITQS---SALEQKWLIRMIIKDL-------KLGVSQQTIFSVF--- 207 (240)
T ss_dssp CCCBHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS---CHHHHHHHHHHHHTCC-------CCSSCHHHHHHHH---
T ss_pred CCcCHHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHC---CHHHHHHHHHHHhccc-------ccCccHhHHHHHh---
Confidence 4577889999999999876 3556779999999886 8999999999998754 4899999988776
Q ss_pred hCCCHHHHHHHHhhhCChHHHHhhhc
Q 004212 266 CGRTESHVKKQYQEMGDLGLVAKASR 291 (768)
Q Consensus 266 ~G~s~~~ik~~y~~~GDlg~vA~~~r 291 (768)
+- .....|.-++||+.||..+.
T Consensus 208 -h~---~~~~a~~~~~dL~~V~~~l~ 229 (240)
T 4htp_A 208 -HN---DAAELHNVTTDLEKVCRQLH 229 (240)
T ss_dssp -CT---THHHHHHHHCCHHHHHHHTC
T ss_pred -Ch---hHHHHHHhhCCHHHHHHHHh
Confidence 21 34668899999999998765
No 39
>3l2p_A DNA ligase 3; DNA ligase, DNA repair, ATP-binding, cell cycle, cell divisi damage; HET: DNA AMP; 3.00A {Homo sapiens}
Probab=72.23 E-value=5.5 Score=46.03 Aligned_cols=84 Identities=14% Similarity=0.162 Sum_probs=67.2
Q ss_pred CccchHHHHHHHHHHHhhhchHHHHHHHHHHHHhhhcCCCCchHHHHHHHhCccCCCccccccCCCHHHHHHHHHHHhCC
Q 004212 189 ERVPFIFLSLVFDMISNETGRILITDIVCNMLRTVMETTPEDLVPVVYLAANKIAPAHEGLELGIGDASIIKALAEACGR 268 (768)
Q Consensus 189 ~~~~F~~la~l~e~I~~tssr~~k~~iL~~~fr~~i~~~p~dl~~~vyl~~~~l~P~~e~~elGIg~~~L~Kal~~a~G~ 268 (768)
.++.-.++=+.|++|+..++.....++|..+|..+ +|.+.-+.+.++++. ...|++++++..++..
T Consensus 116 ~~LTv~~V~~~L~~ia~~~g~~sq~~~l~~l~~~~---~~~E~k~l~R~i~~~-------lriG~~e~~vl~a~~~---- 181 (579)
T 3l2p_A 116 SLLTIQEVDEFLLRLSKLTKEDEQQQALQDIASRC---TANDLKCIIRLIKHD-------LKMNSGAKHVLDALDP---- 181 (579)
T ss_dssp CCCBHHHHHHHHHHHHTCCSHHHHHHHHHHHHTTC---CSHHHHHHHHHHTTC-------CSSSCCHHHHHHTTCT----
T ss_pred CCccHHHHHHHHHHHHhccCcHHHHHHHHHHHHhC---CHHHHHHHHHHHHhh-------hhcccchhHHHHHhCH----
Confidence 57888999999999999988887888899888775 899999999988764 4589999998877752
Q ss_pred CHHHHHHHHhhhCChHHHHhh
Q 004212 269 TESHVKKQYQEMGDLGLVAKA 289 (768)
Q Consensus 269 s~~~ik~~y~~~GDlg~vA~~ 289 (768)
.....|...+|++.|+..
T Consensus 182 ---~a~~~~~~~~~l~~v~~~ 199 (579)
T 3l2p_A 182 ---NAYEAFKASRNLQDVVER 199 (579)
T ss_dssp ---THHHHHHHSCCHHHHHHH
T ss_pred ---HHHHHHhhcCCHHHHHHH
Confidence 134567778888887754
No 40
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=45.34 E-value=32 Score=35.91 Aligned_cols=57 Identities=11% Similarity=0.066 Sum_probs=48.7
Q ss_pred cCCcHHHHHHHHHHhhccCCCeEEEEeEEecCCHHHHHHHHHHHHHcCCceeEEeeC
Q 004212 563 LQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTM 619 (768)
Q Consensus 563 ~~~Pl~ERr~lL~~l~~~~~~~i~l~~~~~~~~~eei~~~~~~ai~~G~EGlVlK~~ 619 (768)
..++.+||+++++..++...+++.++-..-..+.++..++-+.+.+.|..|+|+=.+
T Consensus 51 ~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P 107 (294)
T 3b4u_A 51 CSVGSRERQAILSSFIAAGIAPSRIVTGVLVDSIEDAADQSAEALNAGARNILLAPP 107 (294)
T ss_dssp GGSCHHHHHHHHHHHHHTTCCGGGEEEEECCSSHHHHHHHHHHHHHTTCSEEEECCC
T ss_pred hhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCccHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 467999999999999987777766666666678889999999999999999999876
No 41
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=45.03 E-value=40 Score=35.37 Aligned_cols=57 Identities=14% Similarity=0.071 Sum_probs=49.6
Q ss_pred cCCcHHHHHHHHHHhhccCCCeEEEEeEEecCCHHHHHHHHHHHHHcCCceeEEeeC
Q 004212 563 LQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTM 619 (768)
Q Consensus 563 ~~~Pl~ERr~lL~~l~~~~~~~i~l~~~~~~~~~eei~~~~~~ai~~G~EGlVlK~~ 619 (768)
..++.+||+++++..++...+++.++-..-..+.++..++-+.+.+.|..|+|+=.+
T Consensus 63 ~~Lt~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P 119 (304)
T 3l21_A 63 PTTTDGEKIELLRAVLEAVGDRARVIAGAGTYDTAHSIRLAKACAAEGAHGLLVVTP 119 (304)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECC
T ss_pred hhCCHHHHHHHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCC
Confidence 467899999999999987777777776666778899999999999999999999876
No 42
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=44.73 E-value=49 Score=34.63 Aligned_cols=57 Identities=12% Similarity=0.034 Sum_probs=49.7
Q ss_pred cCCcHHHHHHHHHHhhccCCC-eEEEEeEEecCCHHHHHHHHHHHHHcCCceeEEeeC
Q 004212 563 LQEQLRVRREHLYDSFEEEPG-FFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTM 619 (768)
Q Consensus 563 ~~~Pl~ERr~lL~~l~~~~~~-~i~l~~~~~~~~~eei~~~~~~ai~~G~EGlVlK~~ 619 (768)
..++.+||+++++..++...+ ++.++-..-..+..+..++-+.+.+.|..|+|+=.+
T Consensus 55 ~~Ls~~Er~~v~~~~~~~~~g~rvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P 112 (301)
T 3m5v_A 55 ATLTHEEHRTCIEIAVETCKGTKVKVLAGAGSNATHEAVGLAKFAKEHGADGILSVAP 112 (301)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTSSCEEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred hhCCHHHHHHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 467899999999999988777 777777766778899999999999999999999876
No 43
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=44.65 E-value=43 Score=34.85 Aligned_cols=57 Identities=14% Similarity=0.106 Sum_probs=49.4
Q ss_pred cCCcHHHHHHHHHHhhccCCCeEEEEeEEecCCHHHHHHHHHHHHHcCCceeEEeeC
Q 004212 563 LQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTM 619 (768)
Q Consensus 563 ~~~Pl~ERr~lL~~l~~~~~~~i~l~~~~~~~~~eei~~~~~~ai~~G~EGlVlK~~ 619 (768)
..++.+||+++++..++...+++.++-..-..+.++..++-+.+.+.|..|+|+=.+
T Consensus 52 ~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P 108 (293)
T 1f6k_A 52 FMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELGYDCLSAVTP 108 (293)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTSSEEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECC
T ss_pred hhCCHHHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCC
Confidence 467999999999999987777777776666778889999999999999999999876
No 44
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=44.06 E-value=49 Score=34.47 Aligned_cols=57 Identities=7% Similarity=0.054 Sum_probs=48.9
Q ss_pred cCCcHHHHHHHHHHhhccCCCeEEEEeEEecCCHHHHHHHHHHHHHcCCceeEEeeC
Q 004212 563 LQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTM 619 (768)
Q Consensus 563 ~~~Pl~ERr~lL~~l~~~~~~~i~l~~~~~~~~~eei~~~~~~ai~~G~EGlVlK~~ 619 (768)
..++.+||+++++..++...+++.++-..-..+.++..++-+.+.+.|..|+|+=.+
T Consensus 48 ~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P 104 (294)
T 2ehh_A 48 PTLTFEEHEKVIEFAVKRAAGRIKVIAGTGGNATHEAVHLTAHAKEVGADGALVVVP 104 (294)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTSSEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred hhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCC
Confidence 467999999999999987777777776666678889999999999999999999876
No 45
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=43.95 E-value=52 Score=34.51 Aligned_cols=57 Identities=18% Similarity=0.128 Sum_probs=49.2
Q ss_pred cCCcHHHHHHHHHHhhccCCCeEEEEeEEecCCHHHHHHHHHHHHHcCCceeEEeeC
Q 004212 563 LQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTM 619 (768)
Q Consensus 563 ~~~Pl~ERr~lL~~l~~~~~~~i~l~~~~~~~~~eei~~~~~~ai~~G~EGlVlK~~ 619 (768)
..++.+||+++++..++...+++.++-..-..+.++..++-+.+.+.|..|+|+=.+
T Consensus 64 ~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~st~~ai~la~~A~~~Gadavlv~~P 120 (304)
T 3cpr_A 64 PTTTAAEKLELLKAVREEVGDRAKLIAGVGTNNTRTSVELAEAAASAGADGLLVVTP 120 (304)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred hhCCHHHHHHHHHHHHHHhCCCCcEEecCCCCCHHHHHHHHHHHHhcCCCEEEECCC
Confidence 468999999999999987777777776666678889999999999999999999876
No 46
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=43.74 E-value=41 Score=35.13 Aligned_cols=61 Identities=8% Similarity=-0.032 Sum_probs=50.5
Q ss_pred CCccccCCcHHHHHHHHHHhhccCCCeEEEEeEEecCCHHHHHHHHHHHHHcCCceeEEeeC
Q 004212 558 NGQPLLQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTM 619 (768)
Q Consensus 558 nG~~L~~~Pl~ERr~lL~~l~~~~~~~i~l~~~~~~~~~eei~~~~~~ai~~G~EGlVlK~~ 619 (768)
.|+. ..++.+||+++++..++...+++.++-..-..+.++..++-+.+.+.|..|+|+=.+
T Consensus 51 tGE~-~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P 111 (297)
T 3flu_A 51 TGES-ATLSVEEHTAVIEAVVKHVAKRVPVIAGTGANNTVEAIALSQAAEKAGADYTLSVVP 111 (297)
T ss_dssp TTTG-GGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred ccCc-ccCCHHHHHHHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHHHHHHHcCCCEEEECCC
Confidence 3443 467899999999999887777766666666678899999999999999999999876
No 47
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=43.63 E-value=41 Score=35.55 Aligned_cols=57 Identities=9% Similarity=0.058 Sum_probs=48.9
Q ss_pred cCCcHHHHHHHHHHhhccCCCeEEEEeEEecCCHHHHHHHHHHHHHcCCceeEEeeC
Q 004212 563 LQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTM 619 (768)
Q Consensus 563 ~~~Pl~ERr~lL~~l~~~~~~~i~l~~~~~~~~~eei~~~~~~ai~~G~EGlVlK~~ 619 (768)
..++.+||+++++..++...+++.++-..-..+..+..++-+.+.+.|..|+|+=.+
T Consensus 71 ~~Ls~~Er~~v~~~~v~~~~grvpViaGvg~~st~eai~la~~A~~~Gadavlv~~P 127 (314)
T 3qze_A 71 ATLDVEEHIQVIRRVVDQVKGRIPVIAGTGANSTREAVALTEAAKSGGADACLLVTP 127 (314)
T ss_dssp GGCCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred hhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 467899999999999987777766666666678899999999999999999999876
No 48
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=42.96 E-value=42 Score=35.00 Aligned_cols=57 Identities=7% Similarity=-0.082 Sum_probs=48.7
Q ss_pred cCCcHHHHHHHHHHhhccCCCeEEEEeEEecCCHHHHHHHHHHHHHcCCceeEEeeC
Q 004212 563 LQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTM 619 (768)
Q Consensus 563 ~~~Pl~ERr~lL~~l~~~~~~~i~l~~~~~~~~~eei~~~~~~ai~~G~EGlVlK~~ 619 (768)
..++.+||+++++..++...+++.++-..-..+.++..++-+.+.+.|..|+|+=.+
T Consensus 50 ~~Lt~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P 106 (292)
T 3daq_A 50 PTLTTDEKELILKTVIDLVDKRVPVIAGTGTNDTEKSIQASIQAKALGADAIMLITP 106 (292)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECC
T ss_pred ccCCHHHHHHHHHHHHHHhCCCCcEEEeCCcccHHHHHHHHHHHHHcCCCEEEECCC
Confidence 467899999999999887777766666666678899999999999999999999876
No 49
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=42.62 E-value=41 Score=34.95 Aligned_cols=57 Identities=9% Similarity=0.030 Sum_probs=48.8
Q ss_pred cCCcHHHHHHHHHHhhccCCCeEEEEeEEecCCHHHHHHHHHHHHHcCCceeEEeeC
Q 004212 563 LQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTM 619 (768)
Q Consensus 563 ~~~Pl~ERr~lL~~l~~~~~~~i~l~~~~~~~~~eei~~~~~~ai~~G~EGlVlK~~ 619 (768)
..++.+||+++++..++...+++.++-..-..+..+..++-+.+.+.|..|+|+=.+
T Consensus 49 ~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P 105 (291)
T 3tak_A 49 STLSMEEHTQVIKEIIRVANKRIPIIAGTGANSTREAIELTKAAKDLGADAALLVTP 105 (291)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHHTCSEEEEECC
T ss_pred ccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 467899999999999887777766666666678899999999999999999999876
No 50
>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A
Probab=41.82 E-value=38 Score=35.62 Aligned_cols=57 Identities=7% Similarity=-0.083 Sum_probs=48.6
Q ss_pred cCCcHHHHHHHHHHhhccCCCeEEEEeEEecCCHHHHHHHHHHHHHcCCceeEEeeC
Q 004212 563 LQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTM 619 (768)
Q Consensus 563 ~~~Pl~ERr~lL~~l~~~~~~~i~l~~~~~~~~~eei~~~~~~ai~~G~EGlVlK~~ 619 (768)
..++.+||+++++..++...+++.++-..-..+.++..++-+.+.+.|..|+|+=.+
T Consensus 62 ~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P 118 (307)
T 3s5o_A 62 PFLTSSERLEVVSRVRQAMPKNRLLLAGSGCESTQATVEMTVSMAQVGADAAMVVTP 118 (307)
T ss_dssp GGSCHHHHHHHHHHHHHTSCTTSEEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred hhCCHHHHHHHHHHHHHHcCCCCcEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 457899999999999988777777666666678888999999999999999999776
No 51
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=40.85 E-value=51 Score=34.56 Aligned_cols=57 Identities=18% Similarity=0.155 Sum_probs=48.8
Q ss_pred cCCcHHHHHHHHHHhhccCCCeEEEEeEEecCCHHHHHHHHHHHHHcCCceeEEeeC
Q 004212 563 LQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTM 619 (768)
Q Consensus 563 ~~~Pl~ERr~lL~~l~~~~~~~i~l~~~~~~~~~eei~~~~~~ai~~G~EGlVlK~~ 619 (768)
..++.+||+++++..++...+++.++-..-..+.++..++-+.+.+.|..|+|+=.+
T Consensus 59 ~~Ls~eEr~~v~~~~~~~~~grvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P 115 (303)
T 2wkj_A 59 FVQSLSEREQVLEIVAEEAKGKIKLIAHVGCVSTAESQQLAASAKRYGFDAVSAVTP 115 (303)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEEECC
T ss_pred hhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhCCCCEEEecCC
Confidence 467999999999999987777777766666678889999999999999999999876
No 52
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=40.65 E-value=50 Score=34.36 Aligned_cols=57 Identities=12% Similarity=0.019 Sum_probs=48.4
Q ss_pred cCCcHHHHHHHHHHhhccCCCeEEEEeEEecCCHHHHHHHHHHHHHcCCceeEEeeC
Q 004212 563 LQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTM 619 (768)
Q Consensus 563 ~~~Pl~ERr~lL~~l~~~~~~~i~l~~~~~~~~~eei~~~~~~ai~~G~EGlVlK~~ 619 (768)
..++.+||+++++..++...+++.++-..-..+.++..++-+.+.+.|..|+|+=.+
T Consensus 49 ~~Ls~~Er~~v~~~~~~~~~gr~pvi~Gvg~~~t~~ai~la~~a~~~Gadavlv~~P 105 (291)
T 3a5f_A 49 TTMTETERKETIKFVIDKVNKRIPVIAGTGSNNTAASIAMSKWAESIGVDGLLVITP 105 (291)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred hhCCHHHHHHHHHHHHHHhCCCCcEEEeCCcccHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 467999999999999887677766666666678889999999999999999999876
No 53
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=40.49 E-value=47 Score=34.86 Aligned_cols=57 Identities=12% Similarity=0.110 Sum_probs=48.4
Q ss_pred cCCcHHHHHHHHHHhhccCCCeEEEEeEEecCCHHHHHHHHHHHHHcCCceeEEeeC
Q 004212 563 LQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTM 619 (768)
Q Consensus 563 ~~~Pl~ERr~lL~~l~~~~~~~i~l~~~~~~~~~eei~~~~~~ai~~G~EGlVlK~~ 619 (768)
..++.+||+++++..++...+++.++-..-..+.++..++-+.+.+.|..|+|+=.+
T Consensus 60 ~~Ls~eEr~~vi~~~~~~~~grvpViaGvg~~st~~ai~la~~A~~~Gadavlv~~P 116 (306)
T 1o5k_A 60 PTVNEDEREKLVSRTLEIVDGKIPVIVGAGTNSTEKTLKLVKQAEKLGANGVLVVTP 116 (306)
T ss_dssp GGCCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECC
T ss_pred hhCCHHHHHHHHHHHHHHhCCCCeEEEcCCCccHHHHHHHHHHHHhcCCCEEEECCC
Confidence 467999999999999887777766666666678889999999999999999999876
No 54
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=40.12 E-value=51 Score=34.50 Aligned_cols=57 Identities=4% Similarity=-0.078 Sum_probs=48.4
Q ss_pred cCCcHHHHHHHHHHhhccCCCeEEEEeEEecCCHHHHHHHHHHHHHcCCceeEEeeC
Q 004212 563 LQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTM 619 (768)
Q Consensus 563 ~~~Pl~ERr~lL~~l~~~~~~~i~l~~~~~~~~~eei~~~~~~ai~~G~EGlVlK~~ 619 (768)
..++.+||+++++..++...+++.++-..-..+.++..++-+.+.+.|..|+|+=.+
T Consensus 60 ~~Ls~eEr~~v~~~~~~~~~grvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P 116 (301)
T 1xky_A 60 PTLTSEEKVALYRHVVSVVDKRVPVIAGTGSNNTHASIDLTKKATEVGVDAVMLVAP 116 (301)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred hhCCHHHHHHHHHHHHHHhCCCceEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 457899999999999887777766666666678889999999999999999999877
No 55
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=39.73 E-value=40 Score=35.64 Aligned_cols=57 Identities=5% Similarity=-0.042 Sum_probs=48.1
Q ss_pred cCCcHHHHHHHHHHhhccCCCeEEEEeEEecCCHHHHHHHHHHHHHcCCceeEEeeC
Q 004212 563 LQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTM 619 (768)
Q Consensus 563 ~~~Pl~ERr~lL~~l~~~~~~~i~l~~~~~~~~~eei~~~~~~ai~~G~EGlVlK~~ 619 (768)
..++.+||+++++..++...+++.++-..-..+.++..++-+.+.+.|..|+|+=.+
T Consensus 72 ~~Ls~~Er~~v~~~~v~~~~grvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P 128 (315)
T 3na8_A 72 AYLSDPEWDEVVDFTLKTVAHRVPTIVSVSDLTTAKTVRRAQFAESLGAEAVMVLPI 128 (315)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEECCC
T ss_pred hhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCC
Confidence 467899999999999887777766666666678899999999999999999999765
No 56
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=39.54 E-value=40 Score=35.28 Aligned_cols=57 Identities=7% Similarity=0.004 Sum_probs=48.7
Q ss_pred cCCcHHHHHHHHHHhhccCCCeEEEEeEEecCCHHHHHHHHHHHHHcCCceeEEeeC
Q 004212 563 LQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTM 619 (768)
Q Consensus 563 ~~~Pl~ERr~lL~~l~~~~~~~i~l~~~~~~~~~eei~~~~~~ai~~G~EGlVlK~~ 619 (768)
..++.+||+++++..++...+++.++-..-..+.++..++-+.+.+.|..|+|+=.+
T Consensus 52 ~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P 108 (300)
T 3eb2_A 52 AYLGTAQREAVVRATIEAAQRRVPVVAGVASTSVADAVAQAKLYEKLGADGILAILE 108 (300)
T ss_dssp GGCCHHHHHHHHHHHHHHHTTSSCBEEEEEESSHHHHHHHHHHHHHHTCSEEEEEEC
T ss_pred cccCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 457899999999999887777766666666778899999999999999999999877
No 57
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=39.13 E-value=47 Score=34.49 Aligned_cols=57 Identities=12% Similarity=-0.002 Sum_probs=48.6
Q ss_pred cCCcHHHHHHHHHHhhccCCCeEEEEeEEecCCHHHHHHHHHHHHHcCCceeEEeeC
Q 004212 563 LQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTM 619 (768)
Q Consensus 563 ~~~Pl~ERr~lL~~l~~~~~~~i~l~~~~~~~~~eei~~~~~~ai~~G~EGlVlK~~ 619 (768)
..++.+||+++++..++...+++.++-..-..+.++..++-+.+.+.|..|+|+=.+
T Consensus 48 ~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P 104 (289)
T 2yxg_A 48 PTLSHEEHKKVIEKVVDVVNGRVQVIAGAGSNCTEEAIELSVFAEDVGADAVLSITP 104 (289)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTSSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEEECC
T ss_pred hhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCEEEECCC
Confidence 457899999999999887777777776666678888999999999999999999876
No 58
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=39.05 E-value=45 Score=35.27 Aligned_cols=57 Identities=11% Similarity=0.012 Sum_probs=48.6
Q ss_pred cCCcHHHHHHHHHHhhccCCCeEEEEeEEecCCHHHHHHHHHHHHHcCCceeEEeeC
Q 004212 563 LQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTM 619 (768)
Q Consensus 563 ~~~Pl~ERr~lL~~l~~~~~~~i~l~~~~~~~~~eei~~~~~~ai~~G~EGlVlK~~ 619 (768)
..++.+||+++++..++...+++.++-..-..+..+..++-+.+.+.|..|+|+=.+
T Consensus 70 ~~Ls~~Er~~v~~~~v~~~~grvpViaGvg~~st~~ai~la~~A~~~Gadavlv~~P 126 (315)
T 3si9_A 70 PTLTHEEHKRIIELCVEQVAKRVPVVAGAGSNSTSEAVELAKHAEKAGADAVLVVTP 126 (315)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred cccCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCEEEECCC
Confidence 467899999999999887777766666666678899999999999999999999876
No 59
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Probab=37.95 E-value=48 Score=34.44 Aligned_cols=65 Identities=15% Similarity=0.114 Sum_probs=51.0
Q ss_pred eecCCc--cccCCcHHHHHHHHHHhhccCCCeEEEEeEEecCCHHHHHHHHHHHHHcCCceeEEeeC
Q 004212 555 LYRNGQ--PLLQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTM 619 (768)
Q Consensus 555 LylnG~--~L~~~Pl~ERr~lL~~l~~~~~~~i~l~~~~~~~~~eei~~~~~~ai~~G~EGlVlK~~ 619 (768)
++..|. .-..++.+||+++++..++...+++.++-..-..+.++..++-+.+.+.|..|+|+=.+
T Consensus 38 l~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P 104 (292)
T 2vc6_A 38 LVPCGTTGESPTLSKSEHEQVVEITIKTANGRVPVIAGAGSNSTAEAIAFVRHAQNAGADGVLIVSP 104 (292)
T ss_dssp EETTSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred EEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCccHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 445542 23467999999999999887666666665555667888899999999999999999887
No 60
>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}
Probab=37.22 E-value=67 Score=33.80 Aligned_cols=57 Identities=7% Similarity=-0.046 Sum_probs=48.8
Q ss_pred cCCcHHHHHHHHHHhhccCCCeEEEEeEEecCCHHHHHHHHHHHHHcCC-ceeEEeeC
Q 004212 563 LQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASC-EGLIIKTM 619 (768)
Q Consensus 563 ~~~Pl~ERr~lL~~l~~~~~~~i~l~~~~~~~~~eei~~~~~~ai~~G~-EGlVlK~~ 619 (768)
..++.+||+++++..++...+++.++-..-..+..+..++-+.+.+.|. .|+|+=.+
T Consensus 55 ~~Ls~~Er~~v~~~~~~~~~grvpViaGvg~~~t~~ai~la~~A~~~Ga~davlv~~P 112 (311)
T 3h5d_A 55 PTLTHDEELELFAAVQKVVNGRVPLIAGVGTNDTRDSIEFVKEVAEFGGFAAGLAIVP 112 (311)
T ss_dssp GGSCHHHHHHHHHHHHHHSCSSSCEEEECCCSSHHHHHHHHHHHHHSCCCSEEEEECC
T ss_pred hhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHHHHHHhcCCCcEEEEcCC
Confidence 4678999999999999887777777666666788899999999999997 99999876
No 61
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=37.08 E-value=42 Score=35.38 Aligned_cols=56 Identities=9% Similarity=0.115 Sum_probs=48.3
Q ss_pred cCCcHHHHHHHHHHhhccCCCeEEEEeEEecCCHHHHHHHHHHHHHcCCceeEEeeC
Q 004212 563 LQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTM 619 (768)
Q Consensus 563 ~~~Pl~ERr~lL~~l~~~~~~~i~l~~~~~~~~~eei~~~~~~ai~~G~EGlVlK~~ 619 (768)
..++.+||+++++..++.. +++.++-..-..+..+..++-+.+.+.|..|+|+=.+
T Consensus 56 ~~Lt~~Er~~v~~~~v~~~-grvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P 111 (313)
T 3dz1_A 56 PKLDAAEAEAVATRFIKRA-KSMQVIVGVSAPGFAAMRRLARLSMDAGAAGVMIAPP 111 (313)
T ss_dssp GGSCHHHHHHHHHHHHHHC-TTSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEECCC
T ss_pred hhCCHHHHHHHHHHHHHHc-CCCcEEEecCCCCHHHHHHHHHHHHHcCCCEEEECCC
Confidence 4578999999999999888 8777777766778899999999999999999999655
No 62
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=36.61 E-value=46 Score=34.65 Aligned_cols=57 Identities=9% Similarity=-0.009 Sum_probs=48.1
Q ss_pred cCCcHHHHHHHHHHhhccCCCeEEEEeEEecCCHHHHHHHHHHHHHcCCceeEEeeC
Q 004212 563 LQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTM 619 (768)
Q Consensus 563 ~~~Pl~ERr~lL~~l~~~~~~~i~l~~~~~~~~~eei~~~~~~ai~~G~EGlVlK~~ 619 (768)
..++.+||+++++..++...+++.++-..-..+..+..++-+.+.+.|..|+|+=.+
T Consensus 49 ~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P 105 (292)
T 2ojp_A 49 ATLNHDEHADVVMMTLDLADGRIPVIAGTGANATAEAISLTQRFNDSGIVGCLTVTP 105 (292)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHTTTSSCSEEEEECC
T ss_pred hhCCHHHHHHHHHHHHHHhCCCCcEEEecCCccHHHHHHHHHHHHhcCCCEEEECCC
Confidence 467999999999999887777766666666678888899999999999999999876
No 63
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=36.12 E-value=35 Score=35.89 Aligned_cols=57 Identities=9% Similarity=-0.104 Sum_probs=48.0
Q ss_pred cCCcHHHHHHHHHHhhccCCCeEEEEeEEecCCHHHHHHHHHHHHHcCCceeEEeeC
Q 004212 563 LQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTM 619 (768)
Q Consensus 563 ~~~Pl~ERr~lL~~l~~~~~~~i~l~~~~~~~~~eei~~~~~~ai~~G~EGlVlK~~ 619 (768)
..++.+||+++++..++...+++.++-..-..+..+..++-+.+.+.|..|+++=.+
T Consensus 56 ~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P 112 (309)
T 3fkr_A 56 FAITDDERDVLTRTILEHVAGRVPVIVTTSHYSTQVCAARSLRAQQLGAAMVMAMPP 112 (309)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred ccCCHHHHHHHHHHHHHHhCCCCcEEEecCCchHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 457899999999999887777776666666678889999999999999999999665
No 64
>3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis}
Probab=36.04 E-value=41 Score=35.61 Aligned_cols=57 Identities=7% Similarity=0.026 Sum_probs=48.2
Q ss_pred cCCcHHHHHHHHHHhhccCCCeEEEEeEEecCCHHHHHHHHHHHHHcCCceeEEeeC
Q 004212 563 LQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTM 619 (768)
Q Consensus 563 ~~~Pl~ERr~lL~~l~~~~~~~i~l~~~~~~~~~eei~~~~~~ai~~G~EGlVlK~~ 619 (768)
..++.+||+++++..++...+++.++-..-..+..+..++-+.+.+.|..|+|+=.+
T Consensus 59 ~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P 115 (318)
T 3qfe_A 59 FLLTREERAQLIATARKAVGPDFPIMAGVGAHSTRQVLEHINDASVAGANYVLVLPP 115 (318)
T ss_dssp GGSCHHHHHHHHHHHHHHHCTTSCEEEECCCSSHHHHHHHHHHHHHHTCSEEEECCC
T ss_pred hhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 467899999999999887777766666666678899999999999999999999655
No 65
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=34.31 E-value=61 Score=34.46 Aligned_cols=57 Identities=14% Similarity=0.148 Sum_probs=48.7
Q ss_pred cCCcHHHHHHHHHHhhccCCCeEEEEeEEecCCHHHHHHHHHHHHHcCCceeEEeeC
Q 004212 563 LQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTM 619 (768)
Q Consensus 563 ~~~Pl~ERr~lL~~l~~~~~~~i~l~~~~~~~~~eei~~~~~~ai~~G~EGlVlK~~ 619 (768)
..++.+||+++++..++...+++.++-..-..+.++..++-+.+.+.|..|+++=.+
T Consensus 82 ~~Ls~eEr~~vi~~~ve~~~grvpViaGvg~~st~eai~la~~A~~~Gadavlv~~P 138 (332)
T 2r8w_A 82 MYLTREERRRAIEAAATILRGRRTLMAGIGALRTDEAVALAKDAEAAGADALLLAPV 138 (332)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTSSEEEEEECCSSHHHHHHHHHHHHHHTCSEEEECCC
T ss_pred hhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCC
Confidence 357889999999999987777777776666778889999999999999999999876
No 66
>4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A*
Probab=34.11 E-value=45 Score=36.13 Aligned_cols=57 Identities=5% Similarity=-0.131 Sum_probs=48.6
Q ss_pred cCCcHHHHHHHHHHhhccCCCeEEEEeEEecCCHHHHHHHHHHHHHcCCceeEEeeC
Q 004212 563 LQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTM 619 (768)
Q Consensus 563 ~~~Pl~ERr~lL~~l~~~~~~~i~l~~~~~~~~~eei~~~~~~ai~~G~EGlVlK~~ 619 (768)
..++.+||+++++..++...+++.++-..-..+.++..++-+.+.+.|..|+|+=.+
T Consensus 107 ~~Ls~eEr~~vi~~~ve~~~grvpViaGvg~~st~eai~la~~A~~~Gadavlvv~P 163 (360)
T 4dpp_A 107 QLMSWDEHIMLIGHTVNCFGGSIKVIGNTGSNSTREAIHATEQGFAVGMHAALHINP 163 (360)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSEEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred hhCCHHHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 457899999999999887777777766666678889999999999999999999876
No 67
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=33.88 E-value=60 Score=34.18 Aligned_cols=65 Identities=14% Similarity=0.148 Sum_probs=50.7
Q ss_pred eeecCCc--cccCCcHHHHHHHHHHhhccCCCeEEEEeEEecCCHHHHHHHHHHHHHcCCceeEEeeC
Q 004212 554 ILYRNGQ--PLLQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTM 619 (768)
Q Consensus 554 iLylnG~--~L~~~Pl~ERr~lL~~l~~~~~~~i~l~~~~~~~~~eei~~~~~~ai~~G~EGlVlK~~ 619 (768)
-++.+|. .-..++.+||+++++..++...+++.++-..- .+.++..++-+.+.+.|..|+|+=.+
T Consensus 49 Gl~v~GtTGE~~~Ls~eEr~~v~~~~v~~~~grvpViaGvg-~~t~~ai~la~~A~~~Gadavlv~~P 115 (316)
T 3e96_A 49 VIVPCGNTSEFYALSLEEAKEEVRRTVEYVHGRALVVAGIG-YATSTAIELGNAAKAAGADAVMIHMP 115 (316)
T ss_dssp EECTTSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEEC-SSHHHHHHHHHHHHHHTCSEEEECCC
T ss_pred EEEeCccccCcccCCHHHHHHHHHHHHHHhCCCCcEEEEeC-cCHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 3455552 23467899999999999988777776666554 48888899999999999999998765
No 68
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=33.79 E-value=65 Score=33.91 Aligned_cols=56 Identities=11% Similarity=0.098 Sum_probs=48.1
Q ss_pred cCCcHHHHHHHHHHhhccCCCeEEEEeEEecCCHHHHHHHHHHHHHcCCceeEEeeC
Q 004212 563 LQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTM 619 (768)
Q Consensus 563 ~~~Pl~ERr~lL~~l~~~~~~~i~l~~~~~~~~~eei~~~~~~ai~~G~EGlVlK~~ 619 (768)
..++.+||+++++..++...+++.++-..-. +.++..++-+.+.+.|..|+|+=.+
T Consensus 60 ~~Ls~eEr~~vi~~~~~~~~grvpViaGvg~-st~~ai~la~~A~~~Gadavlv~~P 115 (314)
T 3d0c_A 60 YALTIEEAKQVATRVTELVNGRATVVAGIGY-SVDTAIELGKSAIDSGADCVMIHQP 115 (314)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTSSEEEEEECS-SHHHHHHHHHHHHHTTCSEEEECCC
T ss_pred hhCCHHHHHHHHHHHHHHhCCCCeEEecCCc-CHHHHHHHHHHHHHcCCCEEEECCC
Confidence 4578999999999999877777777766666 8888899999999999999999876
No 69
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=33.66 E-value=52 Score=35.19 Aligned_cols=57 Identities=11% Similarity=0.044 Sum_probs=48.2
Q ss_pred cCCcHHHHHHHHHHhhccCCCeEEEEeEEecCCHHHHHHHHHHHHHcCCceeEEeeC
Q 004212 563 LQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTM 619 (768)
Q Consensus 563 ~~~Pl~ERr~lL~~l~~~~~~~i~l~~~~~~~~~eei~~~~~~ai~~G~EGlVlK~~ 619 (768)
..++.+||+++++..++...+++.++-..-..+.++..++-+.+.+.|..|+|+=.+
T Consensus 79 ~~Ls~eEr~~vi~~~ve~~~grvpViaGvg~~st~eai~la~~A~~~Gadavlv~~P 135 (343)
T 2v9d_A 79 SQLGAEERKAIARFAIDHVDRRVPVLIGTGGTNARETIELSQHAQQAGADGIVVINP 135 (343)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTSSCEEEECCSSCHHHHHHHHHHHHHHTCSEEEEECC
T ss_pred hhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCC
Confidence 457899999999999887777766666666678889999999999999999999876
No 70
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=31.62 E-value=48 Score=34.64 Aligned_cols=57 Identities=11% Similarity=0.009 Sum_probs=47.5
Q ss_pred cCCcHHHHHHHHHHhhccCCCeEEEEeEEecCCHHHHHHHHHHHHHcCCceeEEeeC
Q 004212 563 LQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTM 619 (768)
Q Consensus 563 ~~~Pl~ERr~lL~~l~~~~~~~i~l~~~~~~~~~eei~~~~~~ai~~G~EGlVlK~~ 619 (768)
..++.+||+++++..++...+++.++-..-..+.++..++-+.+.+.|..|+|+=.+
T Consensus 48 ~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P 104 (297)
T 2rfg_A 48 PTLTEEEHKRVVALVAEQAQGRVPVIAGAGSNNPVEAVRYAQHAQQAGADAVLCVAG 104 (297)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHHTCSEEEECCC
T ss_pred hhCCHHHHHHHHHHHHHHhCCCCeEEEccCCCCHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 457899999999999887667666665555678888899999999999999999876
No 71
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A
Probab=27.18 E-value=1.2e+02 Score=31.30 Aligned_cols=54 Identities=9% Similarity=0.174 Sum_probs=44.8
Q ss_pred cCCcHHHHHHHHHHhhccCCCeEEEEeEEecCCHHHHHHHHHHHHHcCCceeEEeeC
Q 004212 563 LQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTM 619 (768)
Q Consensus 563 ~~~Pl~ERr~lL~~l~~~~~~~i~l~~~~~~~~~eei~~~~~~ai~~G~EGlVlK~~ 619 (768)
..++.+||+++++..++...+ ++-..-..+.++..++-+.+.+.|..|+|+=.+
T Consensus 47 ~~Ls~eEr~~v~~~~~~~~~g---ViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P 100 (288)
T 2nuw_A 47 PALSKDEKRQNLNALYDVTHK---LIFQVGSLNLNDVMELVKFSNEMDILGVSSHSP 100 (288)
T ss_dssp GGSCHHHHHHHHHHHTTTCSC---EEEECCCSCHHHHHHHHHHHHTSCCSEEEECCC
T ss_pred hhCCHHHHHHHHHHHHHHhCC---eEEeeCCCCHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 467999999999999987766 444445567888899999999999999999876
No 72
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A
Probab=27.06 E-value=1.2e+02 Score=31.37 Aligned_cols=54 Identities=13% Similarity=0.041 Sum_probs=44.9
Q ss_pred cCCcHHHHHHHHHHhhccCCCeEEEEeEEecCCHHHHHHHHHHHHHcCCceeEEeeC
Q 004212 563 LQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTM 619 (768)
Q Consensus 563 ~~~Pl~ERr~lL~~l~~~~~~~i~l~~~~~~~~~eei~~~~~~ai~~G~EGlVlK~~ 619 (768)
..++.+||+++++..++...+ ++-..-..+.++..++-+.+.+.|..|+|+=.+
T Consensus 46 ~~Ls~~Er~~v~~~~~~~~~g---vi~Gvg~~~t~~ai~la~~A~~~Gadavlv~~P 99 (286)
T 2r91_A 46 PALSLQEKMELTDAATSAARR---VIVQVASLNADEAIALAKYAESRGAEAVASLPP 99 (286)
T ss_dssp GGSCHHHHHHHHHHHHHHCSS---EEEECCCSSHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred hhCCHHHHHHHHHHHHHHhCC---EEEeeCCCCHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 467999999999999987766 444445567888899999999999999999876
No 73
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*
Probab=23.33 E-value=2e+02 Score=29.80 Aligned_cols=54 Identities=11% Similarity=0.119 Sum_probs=44.7
Q ss_pred cCCcHHHHHHHHHHhhccCCCeEEEEeEEecCCHHHHHHHHHHHHHcCCceeEEeeC
Q 004212 563 LQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTM 619 (768)
Q Consensus 563 ~~~Pl~ERr~lL~~l~~~~~~~i~l~~~~~~~~~eei~~~~~~ai~~G~EGlVlK~~ 619 (768)
..++.+||+++++..++...+ ++-..-..+.++..++-+.+.+.|..|+|+=.+
T Consensus 47 ~~Ls~eEr~~v~~~~~~~~~g---viaGvg~~~t~~ai~la~~A~~~Gadavlv~~P 100 (293)
T 1w3i_A 47 PSLSPEEKLENLKAVYDVTNK---IIFQVGGLNLDDAIRLAKLSKDFDIVGIASYAP 100 (293)
T ss_dssp GGSCHHHHHHHHHHHHTTCSC---EEEECCCSCHHHHHHHHHHGGGSCCSEEEEECC
T ss_pred hhCCHHHHHHHHHHHHHHcCC---EEEecCCCCHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 467899999999999987766 444445567888899999999999999999876
Done!