BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004214
(768 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 168 bits (425), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 147/551 (26%), Positives = 242/551 (43%), Gaps = 76/551 (13%)
Query: 9 DRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVA 68
D+ V +W+ +G GH V + F PD + S SDD TV++W+ + +
Sbjct: 78 DKTVKLWNRNGQLL-QTLTGHSSSVRGVAFSPD--GQTIASASDDKTVKLWNRNGQ-LLQ 133
Query: 69 TLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGS 128
TL H S V +A + DG T+ SA DK V LW+ + V V P G
Sbjct: 134 TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDG- 192
Query: 129 AFDSFLSSYNQQTIKKKRRSLEIHFITVGE----RGI-----------------VRMWNA 167
+ S+ + +T+K R+ ++ G RG+ V++WN
Sbjct: 193 --QTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR 250
Query: 168 DSACLYE---QKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPE 224
+ L SS ++F P Q + + D+ TV++
Sbjct: 251 NGQLLQTLTGHSSSVNGVAFR--------------PDGQTIASASDDK------TVKLWN 290
Query: 225 KKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEI 284
+ +L+ + L G++ + + F + Q +A A++ + V++++ + L GHS
Sbjct: 291 RNGQLL--QTLTGHSSSVWGVAF-SPDGQTIASASDDKTVKLWNRNGQHL-QTLTGHSSS 346
Query: 285 VLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLV 344
V + A S I + S D +V+LW+ + + TGH +V VAFS Q +
Sbjct: 347 VWGV---AFSPDGQTIASASDDKTVKLWNRNGQLLQTL-TGHSSSVRGVAFSPDGQT-IA 401
Query: 345 SGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTA 404
S S D T+K+W+ +G + + H + +A +P+D + + S D+T
Sbjct: 402 SASDDKTVKLWNRNG-----------QLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTV 450
Query: 405 CVW-RLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGH 463
+W R L+ +T GH + V FSP Q + +AS DKT+K+W+ +G L+T GH
Sbjct: 451 KLWNRNGQLLQTLT--GHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGH 507
Query: 464 TSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFAT 523
+SSV +F G I S D VKLW R G+ + T H +W +A + A+
Sbjct: 508 SSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIAS 566
Query: 524 GGSDALVNLWH 534
SD V LW+
Sbjct: 567 ASSDKTVKLWN 577
Score = 157 bits (397), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 134/514 (26%), Positives = 220/514 (42%), Gaps = 72/514 (14%)
Query: 24 HYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAIT 83
+ + H V + F PD + S SDD TV++W+ + + TL H S V +A +
Sbjct: 10 NRLEAHSSSVRGVAFSPD--GQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFS 66
Query: 84 SDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIK 143
DG T+ SA DK V LW+ + V V P G QTI
Sbjct: 67 PDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDG------------QTI- 113
Query: 144 KKRRSLEIHFITVGERGIVRMWNADSACLYE---QKSSDVTISFEMDDSKRGFTAATVLP 200
+ + V++WN + L SS ++F P
Sbjct: 114 ----------ASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFS--------------P 149
Query: 201 SNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATN 260
Q + + D+ TV++ + +L+ + L G++ + + F + Q +A A++
Sbjct: 150 DGQTIASASDDK------TVKLWNRNGQLL--QTLTGHSSSVWGVAF-SPDGQTIASASD 200
Query: 261 IEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCV 320
+ V++++ + L GHS V + A S I + S D +V+LW+ +
Sbjct: 201 DKTVKLWNRNGQ-LLQTLTGHSSSVRGV---AFSPDGQTIASASDDKTVKLWNRNGQLLQ 256
Query: 321 GVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHG 380
+ TGH +V VAF Q + S S D T+K+W+ +G + + H
Sbjct: 257 TL-TGHSSSVNGVAFRPDGQT-IASASDDKTVKLWNRNG-----------QLLQTLTGHS 303
Query: 381 KDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITA 440
+ +A +P+ + + S D+T +W + + T GH +W V FSP Q + +A
Sbjct: 304 SSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQHLQTLTGHSSSVWGVAFSPDGQTIASA 362
Query: 441 SGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIA 500
S DKT+K+W+ +G L+T GH+SSV +F G I S D VKLW R G+ +
Sbjct: 363 SDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQ 420
Query: 501 TYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 534
T H +W +A + A+ D V LW+
Sbjct: 421 TLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN 454
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 86/168 (51%), Gaps = 5/168 (2%)
Query: 368 MNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVW-RLPDLVSVVTFRGHKRGIW 426
M +K + + AH + +A +P+ + + S D+T +W R L+ +T GH +W
Sbjct: 4 MGVKERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT--GHSSSVW 61
Query: 427 SVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADG 486
V FSP Q + +AS DKT+K+W+ +G L+T GH+SSV +F G I S D
Sbjct: 62 GVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDK 120
Query: 487 LVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 534
VKLW R G+ + T H +W +A + A+ D V LW+
Sbjct: 121 TVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 167
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 115 bits (287), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 74/244 (30%), Positives = 123/244 (50%), Gaps = 21/244 (8%)
Query: 248 LGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDN 307
L ++Q + ++++D +++ C +L GH+ VLCL + +I+TGS D+
Sbjct: 139 LQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCL-----QYDERVIITGSSDS 193
Query: 308 SVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQP 367
+VR+WD + + H AV + F+ + +V+ S D +I VW D P
Sbjct: 194 TVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGM---MVTCSKDRSIAVW-------DMASP 243
Query: 368 MNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWS 427
++ + V+ H +N V +D + + S DRT VW V T GHKRGI
Sbjct: 244 TDITLRRVLVGHRAAVN--VVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIAC 301
Query: 428 VEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGL 487
+++ D++V++ S D TI++W I G+CL+ EGH V F + +IVS DG
Sbjct: 302 LQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNK--RIVSGAYDGK 357
Query: 488 VKLW 491
+K+W
Sbjct: 358 IKVW 361
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/237 (26%), Positives = 121/237 (51%), Gaps = 24/237 (10%)
Query: 300 IVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDG 359
IV+G +DN++++WD + C + TGH G+V + + +++ +++GSSD T++VW +
Sbjct: 146 IVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERV---IITGSSDSTVRVWDVN- 201
Query: 360 LSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFR 419
+ + + +AV L + N+ ++ T S+DR+ VW + + R
Sbjct: 202 -TGEMLNTLIHHCEAV----------LHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRR 250
Query: 420 ---GHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRG 476
GH+ + V+F D+ +++ASGD+TIK+W+ S ++T GH + A R
Sbjct: 251 VLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGI--ACLQYRD 306
Query: 477 AQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 533
+VS +D ++LW + G C+ + HE+ + + K +G D + +W
Sbjct: 307 RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNK--RIVSGAYDGKIKVW 361
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 72/324 (22%), Positives = 126/324 (38%), Gaps = 56/324 (17%)
Query: 85 DGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKK 144
D ++S RD + +WD CK I G Y+++ I
Sbjct: 142 DDQKIVSGLRDNTIKIWDKNTLECK-------------RILTGHTGSVLCLQYDERVI-- 186
Query: 145 KRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATV-LPSNQ 203
IT VR+W+ ++ EM ++ A + L N
Sbjct: 187 ---------ITGSSDSTVRVWDVNTG--------------EMLNTLIHHCEAVLHLRFNN 223
Query: 204 GLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQ 263
G++ + + + + P ++ L + LVG+ + + F +++Y+ A+
Sbjct: 224 GMMVTCSKDRSIAVWDMASP---TDITLRRVLVGHRAAVNVVDF---DDKYIVSASGDRT 277
Query: 264 VQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVG 323
++V++ S+ L GH + CL L+V+GS DN++RLWD E C+ V
Sbjct: 278 IKVWNTSTCEFVRTLNGHKRGIACL-----QYRDRLVVSGSSDNTIRLWDIECGACLRVL 332
Query: 324 TGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDI 383
GH V + F K +VSG+ D IKVW D L + +V G+
Sbjct: 333 EGHEELVRCIRFDNKR---IVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGR-- 387
Query: 384 NSLAVAPNDSLVCTGSQDRTACVW 407
+ ++ + + S D T +W
Sbjct: 388 -VFRLQFDEFQIVSSSHDDTILIW 410
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 15/105 (14%)
Query: 8 ADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLA---- 63
+D + +WD++ G C +GH+ +V I F D + SG+ D ++VWDL+A
Sbjct: 314 SDNTIRLWDIECGACLRVLEGHEELVRCIRF----DNKRIVSGAYDGKIKVWDLVAALDP 369
Query: 64 -----KKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDL 103
C+ TL +H RV + D ++S+ D + +WD
Sbjct: 370 RAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDF 412
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 49/95 (51%), Gaps = 6/95 (6%)
Query: 9 DRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVA 68
D + +WD + C GH G V + + D+ ++ +GS D+TVRVWD+ + +
Sbjct: 152 DNTIKIWDKNTLECKRILTGHTGSVLCLQY----DERVIITGSSDSTVRVWDVNTGEMLN 207
Query: 69 TLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDL 103
TL H V + + + +++ +D+ + +WD+
Sbjct: 208 TLIHHCEAV--LHLRFNNGMMVTCSKDRSIAVWDM 240
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 6/96 (6%)
Query: 8 ADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCV 67
DR + VW+ GHK ++ + + L+ SGS D T+R+WD+ C+
Sbjct: 274 GDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR----DRLVVSGSSDNTIRLWDIECGACL 329
Query: 68 ATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDL 103
L+ H V I D ++S D + +WDL
Sbjct: 330 RVLEGHEELV--RCIRFDNKRIVSGAYDGKIKVWDL 363
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 87/165 (52%)
Query: 369 NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSV 428
N K +A H K ++S+ +PN + + S D+ +W D T GHK GI V
Sbjct: 29 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 88
Query: 429 EFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLV 488
+S ++++AS DKT+KIW +S G CLKT +GH++ V +F + IVS D V
Sbjct: 89 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 148
Query: 489 KLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 533
++W V+TG+C+ T H D + A+ + + + D L +W
Sbjct: 149 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 193
Score = 100 bits (248), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 83/314 (26%), Positives = 145/314 (46%), Gaps = 21/314 (6%)
Query: 226 KMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIV 285
K L L G+ + + +KF E +LA ++ + ++++ ++GH
Sbjct: 27 KPNYALKFTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTISGHK--- 82
Query: 286 LCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVS 345
L + A SS L+V+ S D ++++WD S C+ GH V F+ + N +VS
Sbjct: 83 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVS 141
Query: 346 GSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTAC 405
GS D ++++W D + LK + AH ++++ + SL+ + S D
Sbjct: 142 GSFDESVRIW-------DVKTGKCLK---TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 191
Query: 406 VWRLPDLVSVVTFRGHKRGIWS-VEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHT 464
+W + T S V+FSP + ++ A+ D T+K+W S G CLKT+ GH
Sbjct: 192 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 251
Query: 465 SS--VLRASF-LTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMF 521
+ + A+F +T G IVS D LV +W ++T E + H D + + A +
Sbjct: 252 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENII 311
Query: 522 ATGG--SDALVNLW 533
A+ +D + LW
Sbjct: 312 ASAALENDKTIKLW 325
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 70/142 (49%), Gaps = 2/142 (1%)
Query: 392 DSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSI 451
++L G+Q + V P+ T GH + + SV+FSP + + ++S DK IKIW
Sbjct: 12 ENLYFQGTQSKPTPV--KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA 69
Query: 452 SDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWA 511
DG KT GH + ++ + +VS D +K+W V +G+C+ T H + ++
Sbjct: 70 YDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC 129
Query: 512 LAVGKKTEMFATGGSDALVNLW 533
++ + +G D V +W
Sbjct: 130 CNFNPQSNLIVSGSFDESVRIW 151
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 83/355 (23%), Positives = 133/355 (37%), Gaps = 90/355 (25%)
Query: 8 ADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCV 67
AD+ + +W G GHK +S + + D++ LL S SDD T+++WD+ + KC+
Sbjct: 60 ADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN--LLVSASDDKTLKIWDVSSGKCL 117
Query: 68 ATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTY-EMVEAVCAIPP 126
TL H + V + ++S D+ V +WD++ C T+P + + V AV
Sbjct: 118 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 177
Query: 127 GSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWN-ADSACLYEQKSSDVTISFE 185
GS S SSY+ G+ R+W+ A CL
Sbjct: 178 GSLIVS--SSYD---------------------GLCRIWDTASGQCLKTL---------- 204
Query: 186 MDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDL 245
+DD + P+ + +L T D L L
Sbjct: 205 IDDDNPPVSFVKFSPNGKYILAATLDNTLKL----------------------------- 235
Query: 246 KFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSK 305
+D S C GH C+ +G IV+GS+
Sbjct: 236 ---------------------WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 274
Query: 306 DNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGS--SDHTIKVWSFD 358
DN V +W+ +++ V GH V + A +N + S + +D TIK+W D
Sbjct: 275 DNLVYIWNLQTKEIVQKLQGHTDVVISTA-CHPTENIIASAALENDKTIKLWKSD 328
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 44/103 (42%), Gaps = 3/103 (2%)
Query: 2 FALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPD-TDKSLLFSGSDDATVRVWD 60
+ L D + +WD G C + GHK I + T + SGS+D V +W+
Sbjct: 223 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 282
Query: 61 LLAKKCVATLDKHFSRVTSMAITSDGSTLISAG--RDKVVNLW 101
L K+ V L H V S A + + SA DK + LW
Sbjct: 283 LQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 325
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 87/165 (52%)
Query: 369 NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSV 428
N K +A H K ++S+ +PN + + S D+ +W D T GHK GI V
Sbjct: 34 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 93
Query: 429 EFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLV 488
+S ++++AS DKT+KIW +S G CLKT +GH++ V +F + IVS D V
Sbjct: 94 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 153
Query: 489 KLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 533
++W V+TG+C+ T H D + A+ + + + D L +W
Sbjct: 154 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 198
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 83/314 (26%), Positives = 145/314 (46%), Gaps = 21/314 (6%)
Query: 226 KMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIV 285
K L L G+ + + +KF E +LA ++ + ++++ ++GH
Sbjct: 32 KPNYALKFTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTISGHK--- 87
Query: 286 LCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVS 345
L + A SS L+V+ S D ++++WD S C+ GH V F+ + N +VS
Sbjct: 88 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVS 146
Query: 346 GSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTAC 405
GS D ++++W D + LK + AH ++++ + SL+ + S D
Sbjct: 147 GSFDESVRIW-------DVKTGKCLK---TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 196
Query: 406 VWRLPDLVSVVTFRGHKRGIWS-VEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHT 464
+W + T S V+FSP + ++ A+ D T+K+W S G CLKT+ GH
Sbjct: 197 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 256
Query: 465 SS--VLRASF-LTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMF 521
+ + A+F +T G IVS D LV +W ++T E + H D + + A +
Sbjct: 257 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENII 316
Query: 522 ATGG--SDALVNLW 533
A+ +D + LW
Sbjct: 317 ASAALENDKTIKLW 330
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 83/355 (23%), Positives = 133/355 (37%), Gaps = 90/355 (25%)
Query: 8 ADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCV 67
AD+ + +W G GHK +S + + +D +LL S SDD T+++WD+ + KC+
Sbjct: 65 ADKLIKIWGAYDGKFEKTISGHKLGISDVAW--SSDSNLLVSASDDKTLKIWDVSSGKCL 122
Query: 68 ATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTY-EMVEAVCAIPP 126
TL H + V + ++S D+ V +WD++ C T+P + + V AV
Sbjct: 123 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 182
Query: 127 GSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWN-ADSACLYEQKSSDVTISFE 185
GS S SSY+ G+ R+W+ A CL
Sbjct: 183 GSLIVS--SSYD---------------------GLCRIWDTASGQCLKTL---------- 209
Query: 186 MDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDL 245
+DD + P+ + +L T D L L
Sbjct: 210 IDDDNPPVSFVKFSPNGKYILAATLDNTLKL----------------------------- 240
Query: 246 KFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSK 305
+D S C GH C+ +G IV+GS+
Sbjct: 241 ---------------------WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 279
Query: 306 DNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGS--SDHTIKVWSFD 358
DN V +W+ +++ V GH V + A +N + S + +D TIK+W D
Sbjct: 280 DNLVYIWNLQTKEIVQKLQGHTDVVISTA-CHPTENIIASAALENDKTIKLWKSD 333
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 44/103 (42%), Gaps = 3/103 (2%)
Query: 2 FALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPD-TDKSLLFSGSDDATVRVWD 60
+ L D + +WD G C + GHK I + T + SGS+D V +W+
Sbjct: 228 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 287
Query: 61 LLAKKCVATLDKHFSRVTSMAITSDGSTLISAG--RDKVVNLW 101
L K+ V L H V S A + + SA DK + LW
Sbjct: 288 LQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 330
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 87/165 (52%)
Query: 369 NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSV 428
N K +A H K ++S+ +PN + + S D+ +W D T GHK GI V
Sbjct: 15 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 74
Query: 429 EFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLV 488
+S ++++AS DKT+KIW +S G CLKT +GH++ V +F + IVS D V
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 134
Query: 489 KLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 533
++W V+TG+C+ T H D + A+ + + + D L +W
Sbjct: 135 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179
Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 94/178 (52%), Gaps = 13/178 (7%)
Query: 325 GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVW-SFDGLSDDAEQPMNLKAKAVVAAHGKDI 383
GH AV +V FS + +L S S+D IK+W ++DG K + ++ H I
Sbjct: 24 GHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDG-----------KFEKTISGHKLGI 71
Query: 384 NSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGD 443
+ +A + + +L+ + S D+T +W + + T +GH ++ F+P ++++ S D
Sbjct: 72 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 131
Query: 444 KTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIAT 501
++++IW + G CLKT H+ V F G+ IVS DGL ++W +G+C+ T
Sbjct: 132 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 189
Score = 96.3 bits (238), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 80/302 (26%), Positives = 140/302 (46%), Gaps = 19/302 (6%)
Query: 226 KMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIV 285
K L L G+ + + +KF E +LA ++ + ++++ ++GH
Sbjct: 13 KPNYALKFTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTISGHK--- 68
Query: 286 LCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVS 345
L + A SS L+V+ S D ++++WD S C+ GH V F+ + N +VS
Sbjct: 69 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVS 127
Query: 346 GSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTAC 405
GS D ++++W D + LK + AH ++++ + SL+ + S D
Sbjct: 128 GSFDESVRIW-------DVKTGKCLK---TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 177
Query: 406 VWRLPDLVSVVTFRGHKRGIWS-VEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHT 464
+W + T S V+FSP + ++ A+ D T+K+W S G CLKT+ GH
Sbjct: 178 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 237
Query: 465 SS--VLRASF-LTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMF 521
+ + A+F +T G IVS D LV +W ++T E + H D + + A +
Sbjct: 238 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENII 297
Query: 522 AT 523
A+
Sbjct: 298 AS 299
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 72/308 (23%), Positives = 130/308 (42%), Gaps = 50/308 (16%)
Query: 179 DVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGY 238
+ + F + + ++ P+ + L +AD+ + ++ + K E K + G+
Sbjct: 15 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD---GKFE----KTISGH 67
Query: 239 NEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKI 298
I D+ + + L A++ + ++++D+SS C L GHS V C C +
Sbjct: 68 KLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC---CNFNPQSN 123
Query: 299 LIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS-- 356
LIV+GS D SVR+WD ++ C+ H V AV F++ + +VS S D ++W
Sbjct: 124 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD-GSLIVSSSYDGLCRIWDTA 182
Query: 357 ----FDGLSDDAEQPMNL-----KAKAVVAA------------HGKDINSLAVAPNDSL- 394
L DD P++ K ++AA GK + + N+
Sbjct: 183 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC 242
Query: 395 ------------VCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITAS- 441
+ +GS+D +W L V +GH + S P + ++ +A+
Sbjct: 243 IFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAAL 302
Query: 442 -GDKTIKI 448
DKTIK+
Sbjct: 303 ENDKTIKL 310
Score = 72.8 bits (177), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 62/124 (50%)
Query: 410 PDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLR 469
P+ T GH + + SV+FSP + + ++S DK IKIW DG KT GH +
Sbjct: 14 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 73
Query: 470 ASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDAL 529
++ + +VS D +K+W V +G+C+ T H + ++ ++ + +G D
Sbjct: 74 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 133
Query: 530 VNLW 533
V +W
Sbjct: 134 VRIW 137
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 82/355 (23%), Positives = 133/355 (37%), Gaps = 90/355 (25%)
Query: 8 ADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCV 67
AD+ + +W G GHK +S + + D++ LL S SDD T+++WD+ + KC+
Sbjct: 46 ADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN--LLVSASDDKTLKIWDVSSGKCL 103
Query: 68 ATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTY-EMVEAVCAIPP 126
TL H + V + ++S D+ V +WD++ C T+P + + V AV
Sbjct: 104 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 163
Query: 127 GSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWN-ADSACLYEQKSSDVTISFE 185
GS S SSY+ G+ R+W+ A CL
Sbjct: 164 GSLIVS--SSYD---------------------GLCRIWDTASGQCLKTL---------- 190
Query: 186 MDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDL 245
+DD + P+ + +L T D L L
Sbjct: 191 IDDDNPPVSFVKFSPNGKYILAATLDNTLKL----------------------------- 221
Query: 246 KFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSK 305
+D S C GH C+ +G IV+GS+
Sbjct: 222 ---------------------WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 260
Query: 306 DNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGS--SDHTIKVWSFD 358
DN V +W+ +++ V GH V + A +N + S + +D TIK++ D
Sbjct: 261 DNLVYIWNLQTKEIVQKLQGHTDVVISTA-CHPTENIIASAALENDKTIKLFKSD 314
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 43/102 (42%), Gaps = 3/102 (2%)
Query: 2 FALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPD-TDKSLLFSGSDDATVRVWD 60
+ L D + +WD G C + GHK I + T + SGS+D V +W+
Sbjct: 209 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 268
Query: 61 LLAKKCVATLDKHFSRVTSMAITSDGSTLISAG--RDKVVNL 100
L K+ V L H V S A + + SA DK + L
Sbjct: 269 LQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKL 310
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 87/165 (52%)
Query: 369 NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSV 428
N K +A H K ++S+ +PN + + S D+ +W D T GHK GI V
Sbjct: 15 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 74
Query: 429 EFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLV 488
+S ++++AS DKT+KIW +S G CLKT +GH++ V +F + IVS D V
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 134
Query: 489 KLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 533
++W V+TG+C+ T H D + A+ + + + D L +W
Sbjct: 135 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179
Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 94/178 (52%), Gaps = 13/178 (7%)
Query: 325 GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVW-SFDGLSDDAEQPMNLKAKAVVAAHGKDI 383
GH AV +V FS + +L S S+D IK+W ++DG K + ++ H I
Sbjct: 24 GHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDG-----------KFEKTISGHKLGI 71
Query: 384 NSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGD 443
+ +A + + +L+ + S D+T +W + + T +GH ++ F+P ++++ S D
Sbjct: 72 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 131
Query: 444 KTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIAT 501
++++IW + G CLKT H+ V F G+ IVS DGL ++W +G+C+ T
Sbjct: 132 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 189
Score = 96.3 bits (238), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 80/302 (26%), Positives = 140/302 (46%), Gaps = 19/302 (6%)
Query: 226 KMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIV 285
K L L G+ + + +KF E +LA ++ + ++++ ++GH
Sbjct: 13 KPNYALKFTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTISGHK--- 68
Query: 286 LCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVS 345
L + A SS L+V+ S D ++++WD S C+ GH V F+ + N +VS
Sbjct: 69 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVS 127
Query: 346 GSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTAC 405
GS D ++++W D + LK + AH ++++ + SL+ + S D
Sbjct: 128 GSFDESVRIW-------DVKTGKCLK---TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 177
Query: 406 VWRLPDLVSVVTFRGHKRGIWS-VEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHT 464
+W + T S V+FSP + ++ A+ D T+K+W S G CLKT+ GH
Sbjct: 178 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 237
Query: 465 SS--VLRASF-LTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMF 521
+ + A+F +T G IVS D LV +W ++T E + H D + + A +
Sbjct: 238 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENII 297
Query: 522 AT 523
A+
Sbjct: 298 AS 299
Score = 72.8 bits (177), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 62/124 (50%)
Query: 410 PDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLR 469
P+ T GH + + SV+FSP + + ++S DK IKIW DG KT GH +
Sbjct: 14 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 73
Query: 470 ASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDAL 529
++ + +VS D +K+W V +G+C+ T H + ++ ++ + +G D
Sbjct: 74 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 133
Query: 530 VNLW 533
V +W
Sbjct: 134 VRIW 137
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 82/355 (23%), Positives = 133/355 (37%), Gaps = 90/355 (25%)
Query: 8 ADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCV 67
AD+ + +W G GHK +S + + D++ LL S SDD T+++WD+ + KC+
Sbjct: 46 ADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN--LLVSASDDKTLKIWDVSSGKCL 103
Query: 68 ATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTY-EMVEAVCAIPP 126
TL H + V + ++S D+ V +WD++ C T+P + + V AV
Sbjct: 104 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 163
Query: 127 GSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWN-ADSACLYEQKSSDVTISFE 185
GS S SSY+ G+ R+W+ A CL
Sbjct: 164 GSLIVS--SSYD---------------------GLCRIWDTASGQCLKTL---------- 190
Query: 186 MDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDL 245
+DD + P+ + +L T D L L
Sbjct: 191 IDDDNPPVSFVKFSPNGKYILAATLDNTLKL----------------------------- 221
Query: 246 KFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSK 305
+D S C GH C+ +G IV+GS+
Sbjct: 222 ---------------------WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 260
Query: 306 DNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGS--SDHTIKVWSFD 358
DN V +W+ +++ V GH V + A +N + S + +D TIK++ D
Sbjct: 261 DNLVYIWNLQTKEIVQKLQGHTDVVISTA-CHPTENIIASAALENDKTIKLYKSD 314
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 44/103 (42%), Gaps = 3/103 (2%)
Query: 2 FALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPD-TDKSLLFSGSDDATVRVWD 60
+ L D + +WD G C + GHK I + T + SGS+D V +W+
Sbjct: 209 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 268
Query: 61 LLAKKCVATLDKHFSRVTSMAITSDGSTLISAG--RDKVVNLW 101
L K+ V L H V S A + + SA DK + L+
Sbjct: 269 LQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLY 311
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 87/165 (52%)
Query: 369 NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSV 428
N K +A H K ++S+ +PN + + S D+ +W D T GHK GI V
Sbjct: 36 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 95
Query: 429 EFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLV 488
+S ++++AS DKT+KIW +S G CLKT +GH++ V +F + IVS D V
Sbjct: 96 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 155
Query: 489 KLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 533
++W V+TG+C+ T H D + A+ + + + D L +W
Sbjct: 156 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 200
Score = 100 bits (248), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 83/314 (26%), Positives = 145/314 (46%), Gaps = 21/314 (6%)
Query: 226 KMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIV 285
K L L G+ + + +KF E +LA ++ + ++++ ++GH
Sbjct: 34 KPNYALKFTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTISGHK--- 89
Query: 286 LCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVS 345
L + A SS L+V+ S D ++++WD S C+ GH V F+ + N +VS
Sbjct: 90 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVS 148
Query: 346 GSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTAC 405
GS D ++++W D + LK + AH ++++ + SL+ + S D
Sbjct: 149 GSFDESVRIW-------DVKTGKCLK---TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 198
Query: 406 VWRLPDLVSVVTFRGHKRGIWS-VEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHT 464
+W + T S V+FSP + ++ A+ D T+K+W S G CLKT+ GH
Sbjct: 199 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 258
Query: 465 SS--VLRASF-LTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMF 521
+ + A+F +T G IVS D LV +W ++T E + H D + + A +
Sbjct: 259 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENII 318
Query: 522 ATGG--SDALVNLW 533
A+ +D + LW
Sbjct: 319 ASAALENDKTIKLW 332
Score = 72.8 bits (177), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 83/355 (23%), Positives = 133/355 (37%), Gaps = 90/355 (25%)
Query: 8 ADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCV 67
AD+ + +W G GHK +S + + +D +LL S SDD T+++WD+ + KC+
Sbjct: 67 ADKLIKIWGAYDGKFEKTISGHKLGISDVAW--SSDSNLLVSASDDKTLKIWDVSSGKCL 124
Query: 68 ATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTY-EMVEAVCAIPP 126
TL H + V + ++S D+ V +WD++ C T+P + + V AV
Sbjct: 125 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 184
Query: 127 GSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWN-ADSACLYEQKSSDVTISFE 185
GS S SSY+ G+ R+W+ A CL
Sbjct: 185 GSLIVS--SSYD---------------------GLCRIWDTASGQCLKTL---------- 211
Query: 186 MDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDL 245
+DD + P+ + +L T D L L
Sbjct: 212 IDDDNPPVSFVKFSPNGKYILAATLDNTLKL----------------------------- 242
Query: 246 KFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSK 305
+D S C GH C+ +G IV+GS+
Sbjct: 243 ---------------------WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 281
Query: 306 DNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGS--SDHTIKVWSFD 358
DN V +W+ +++ V GH V + A +N + S + +D TIK+W D
Sbjct: 282 DNLVYIWNLQTKEIVQKLQGHTDVVISTA-CHPTENIIASAALENDKTIKLWKSD 335
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 44/103 (42%), Gaps = 3/103 (2%)
Query: 2 FALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPD-TDKSLLFSGSDDATVRVWD 60
+ L D + +WD G C + GHK I + T + SGS+D V +W+
Sbjct: 230 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 289
Query: 61 LLAKKCVATLDKHFSRVTSMAITSDGSTLISAG--RDKVVNLW 101
L K+ V L H V S A + + SA DK + LW
Sbjct: 290 LQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 332
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 87/165 (52%)
Query: 369 NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSV 428
N K +A H K ++S+ +PN + + S D+ +W D T GHK GI V
Sbjct: 18 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 77
Query: 429 EFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLV 488
+S ++++AS DKT+KIW +S G CLKT +GH++ V +F + IVS D V
Sbjct: 78 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 137
Query: 489 KLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 533
++W V+TG+C+ T H D + A+ + + + D L +W
Sbjct: 138 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 182
Score = 99.8 bits (247), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 82/314 (26%), Positives = 145/314 (46%), Gaps = 21/314 (6%)
Query: 226 KMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIV 285
K L L G+ + + +KF ++LA ++ + ++++ ++GH
Sbjct: 16 KPNYALKFTLAGHTKAVSSVKF-SPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK--- 71
Query: 286 LCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVS 345
L + A SS L+V+ S D ++++WD S C+ GH V F+ + N +VS
Sbjct: 72 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVS 130
Query: 346 GSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTAC 405
GS D ++++W D + LK + AH ++++ + SL+ + S D
Sbjct: 131 GSFDESVRIW-------DVKTGKCLK---TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 180
Query: 406 VWRLPDLVSVVTFRGHKRGIWS-VEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHT 464
+W + T S V+FSP + ++ A+ D T+K+W S G CLKT+ GH
Sbjct: 181 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 240
Query: 465 SS--VLRASF-LTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMF 521
+ + A+F +T G IVS D LV +W ++T E + H D + + A +
Sbjct: 241 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENII 300
Query: 522 ATGG--SDALVNLW 533
A+ +D + LW
Sbjct: 301 ASAALENDKTIKLW 314
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 83/355 (23%), Positives = 133/355 (37%), Gaps = 90/355 (25%)
Query: 8 ADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCV 67
AD+ + +W G GHK +S + + +D +LL S SDD T+++WD+ + KC+
Sbjct: 49 ADKLIKIWGAYDGKFEKTISGHKLGISDVAW--SSDSNLLVSASDDKTLKIWDVSSGKCL 106
Query: 68 ATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTY-EMVEAVCAIPP 126
TL H + V + ++S D+ V +WD++ C T+P + + V AV
Sbjct: 107 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 166
Query: 127 GSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWN-ADSACLYEQKSSDVTISFE 185
GS S SSY+ G+ R+W+ A CL
Sbjct: 167 GSLIVS--SSYD---------------------GLCRIWDTASGQCLKTL---------- 193
Query: 186 MDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDL 245
+DD + P+ + +L T D L L
Sbjct: 194 IDDDNPPVSFVKFSPNGKYILAATLDNTLKL----------------------------- 224
Query: 246 KFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSK 305
+D S C GH C+ +G IV+GS+
Sbjct: 225 ---------------------WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 263
Query: 306 DNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGS--SDHTIKVWSFD 358
DN V +W+ +++ V GH V + A +N + S + +D TIK+W D
Sbjct: 264 DNLVYIWNLQTKEIVQKLQGHTDVVISTA-CHPTENIIASAALENDKTIKLWKSD 317
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 44/103 (42%), Gaps = 3/103 (2%)
Query: 2 FALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPD-TDKSLLFSGSDDATVRVWD 60
+ L D + +WD G C + GHK I + T + SGS+D V +W+
Sbjct: 212 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 271
Query: 61 LLAKKCVATLDKHFSRVTSMAITSDGSTLISAG--RDKVVNLW 101
L K+ V L H V S A + + SA DK + LW
Sbjct: 272 LQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 87/165 (52%)
Query: 369 NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSV 428
N K +A H K ++S+ +PN + + S D+ +W D T GHK GI V
Sbjct: 8 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 67
Query: 429 EFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLV 488
+S ++++AS DKT+KIW +S G CLKT +GH++ V +F + IVS D V
Sbjct: 68 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 127
Query: 489 KLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 533
++W V+TG+C+ T H D + A+ + + + D L +W
Sbjct: 128 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 172
Score = 99.8 bits (247), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 82/314 (26%), Positives = 145/314 (46%), Gaps = 21/314 (6%)
Query: 226 KMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIV 285
K L L G+ + + +KF ++LA ++ + ++++ ++GH
Sbjct: 6 KPNYALKFTLAGHTKAVSSVKF-SPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK--- 61
Query: 286 LCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVS 345
L + A SS L+V+ S D ++++WD S C+ GH V F+ + N +VS
Sbjct: 62 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVS 120
Query: 346 GSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTAC 405
GS D ++++W D + LK + AH ++++ + SL+ + S D
Sbjct: 121 GSFDESVRIW-------DVKTGKCLK---TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 170
Query: 406 VWRLPDLVSVVTFRGHKRGIWS-VEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHT 464
+W + T S V+FSP + ++ A+ D T+K+W S G CLKT+ GH
Sbjct: 171 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 230
Query: 465 SS--VLRASF-LTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMF 521
+ + A+F +T G IVS D LV +W ++T E + H D + + A +
Sbjct: 231 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENII 290
Query: 522 ATGG--SDALVNLW 533
A+ +D + LW
Sbjct: 291 ASAALENDKTIKLW 304
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 83/355 (23%), Positives = 133/355 (37%), Gaps = 90/355 (25%)
Query: 8 ADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCV 67
AD+ + +W G GHK +S + + +D +LL S SDD T+++WD+ + KC+
Sbjct: 39 ADKLIKIWGAYDGKFEKTISGHKLGISDVAW--SSDSNLLVSASDDKTLKIWDVSSGKCL 96
Query: 68 ATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTY-EMVEAVCAIPP 126
TL H + V + ++S D+ V +WD++ C T+P + + V AV
Sbjct: 97 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 156
Query: 127 GSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWN-ADSACLYEQKSSDVTISFE 185
GS S SSY+ G+ R+W+ A CL
Sbjct: 157 GSLIVS--SSYD---------------------GLCRIWDTASGQCLKTL---------- 183
Query: 186 MDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDL 245
+DD + P+ + +L T D L L
Sbjct: 184 IDDDNPPVSFVKFSPNGKYILAATLDNTLKL----------------------------- 214
Query: 246 KFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSK 305
+D S C GH C+ +G IV+GS+
Sbjct: 215 ---------------------WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 253
Query: 306 DNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGS--SDHTIKVWSFD 358
DN V +W+ +++ V GH V + A +N + S + +D TIK+W D
Sbjct: 254 DNLVYIWNLQTKEIVQKLQGHTDVVISTA-CHPTENIIASAALENDKTIKLWKSD 307
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 44/103 (42%), Gaps = 3/103 (2%)
Query: 2 FALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPD-TDKSLLFSGSDDATVRVWD 60
+ L D + +WD G C + GHK I + T + SGS+D V +W+
Sbjct: 202 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 261
Query: 61 LLAKKCVATLDKHFSRVTSMAITSDGSTLISAG--RDKVVNLW 101
L K+ V L H V S A + + SA DK + LW
Sbjct: 262 LQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 304
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 87/165 (52%)
Query: 369 NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSV 428
N K +A H K ++S+ +PN + + S D+ +W D T GHK GI V
Sbjct: 12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 71
Query: 429 EFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLV 488
+S ++++AS DKT+KIW +S G CLKT +GH++ V +F + IVS D V
Sbjct: 72 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 131
Query: 489 KLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 533
++W V+TG+C+ T H D + A+ + + + D L +W
Sbjct: 132 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 176
Score = 99.8 bits (247), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 82/314 (26%), Positives = 145/314 (46%), Gaps = 21/314 (6%)
Query: 226 KMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIV 285
K L L G+ + + +KF ++LA ++ + ++++ ++GH
Sbjct: 10 KPNYALKFTLAGHTKAVSSVKF-SPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK--- 65
Query: 286 LCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVS 345
L + A SS L+V+ S D ++++WD S C+ GH V F+ + N +VS
Sbjct: 66 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVS 124
Query: 346 GSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTAC 405
GS D ++++W D + LK + AH ++++ + SL+ + S D
Sbjct: 125 GSFDESVRIW-------DVKTGKCLK---TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 174
Query: 406 VWRLPDLVSVVTFRGHKRGIWS-VEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHT 464
+W + T S V+FSP + ++ A+ D T+K+W S G CLKT+ GH
Sbjct: 175 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 234
Query: 465 SS--VLRASF-LTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMF 521
+ + A+F +T G IVS D LV +W ++T E + H D + + A +
Sbjct: 235 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENII 294
Query: 522 ATGG--SDALVNLW 533
A+ +D + LW
Sbjct: 295 ASAALENDKTIKLW 308
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 83/355 (23%), Positives = 133/355 (37%), Gaps = 90/355 (25%)
Query: 8 ADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCV 67
AD+ + +W G GHK +S + + D++ LL S SDD T+++WD+ + KC+
Sbjct: 43 ADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN--LLVSASDDKTLKIWDVSSGKCL 100
Query: 68 ATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTY-EMVEAVCAIPP 126
TL H + V + ++S D+ V +WD++ C T+P + + V AV
Sbjct: 101 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 160
Query: 127 GSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWN-ADSACLYEQKSSDVTISFE 185
GS S SSY+ G+ R+W+ A CL
Sbjct: 161 GSLIVS--SSYD---------------------GLCRIWDTASGQCLKTL---------- 187
Query: 186 MDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDL 245
+DD + P+ + +L T D L L
Sbjct: 188 IDDDNPPVSFVKFSPNGKYILAATLDNTLKL----------------------------- 218
Query: 246 KFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSK 305
+D S C GH C+ +G IV+GS+
Sbjct: 219 ---------------------WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 257
Query: 306 DNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGS--SDHTIKVWSFD 358
DN V +W+ +++ V GH V + A +N + S + +D TIK+W D
Sbjct: 258 DNLVYIWNLQTKEIVQKLQGHTDVVISTA-CHPTENIIASAALENDKTIKLWKSD 311
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 44/103 (42%), Gaps = 3/103 (2%)
Query: 2 FALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPD-TDKSLLFSGSDDATVRVWD 60
+ L D + +WD G C + GHK I + T + SGS+D V +W+
Sbjct: 206 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 265
Query: 61 LLAKKCVATLDKHFSRVTSMAITSDGSTLISAG--RDKVVNLW 101
L K+ V L H V S A + + SA DK + LW
Sbjct: 266 LQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 308
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 87/165 (52%)
Query: 369 NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSV 428
N K +A H K ++S+ +PN + + S D+ +W D T GHK GI V
Sbjct: 13 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 72
Query: 429 EFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLV 488
+S ++++AS DKT+KIW +S G CLKT +GH++ V +F + IVS D V
Sbjct: 73 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 132
Query: 489 KLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 533
++W V+TG+C+ T H D + A+ + + + D L +W
Sbjct: 133 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 177
Score = 99.8 bits (247), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 82/314 (26%), Positives = 145/314 (46%), Gaps = 21/314 (6%)
Query: 226 KMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIV 285
K L L G+ + + +KF ++LA ++ + ++++ ++GH
Sbjct: 11 KPNYALKFTLAGHTKAVSSVKF-SPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK--- 66
Query: 286 LCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVS 345
L + A SS L+V+ S D ++++WD S C+ GH V F+ + N +VS
Sbjct: 67 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVS 125
Query: 346 GSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTAC 405
GS D ++++W D + LK + AH ++++ + SL+ + S D
Sbjct: 126 GSFDESVRIW-------DVKTGKCLK---TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 175
Query: 406 VWRLPDLVSVVTFRGHKRGIWS-VEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHT 464
+W + T S V+FSP + ++ A+ D T+K+W S G CLKT+ GH
Sbjct: 176 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 235
Query: 465 SS--VLRASF-LTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMF 521
+ + A+F +T G IVS D LV +W ++T E + H D + + A +
Sbjct: 236 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENII 295
Query: 522 ATGG--SDALVNLW 533
A+ +D + LW
Sbjct: 296 ASAALENDKTIKLW 309
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 83/355 (23%), Positives = 133/355 (37%), Gaps = 90/355 (25%)
Query: 8 ADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCV 67
AD+ + +W G GHK +S + + D++ LL S SDD T+++WD+ + KC+
Sbjct: 44 ADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN--LLVSASDDKTLKIWDVSSGKCL 101
Query: 68 ATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTY-EMVEAVCAIPP 126
TL H + V + ++S D+ V +WD++ C T+P + + V AV
Sbjct: 102 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 161
Query: 127 GSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWN-ADSACLYEQKSSDVTISFE 185
GS S SSY+ G+ R+W+ A CL
Sbjct: 162 GSLIVS--SSYD---------------------GLCRIWDTASGQCLKTL---------- 188
Query: 186 MDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDL 245
+DD + P+ + +L T D L L
Sbjct: 189 IDDDNPPVSFVKFSPNGKYILAATLDNTLKL----------------------------- 219
Query: 246 KFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSK 305
+D S C GH C+ +G IV+GS+
Sbjct: 220 ---------------------WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 258
Query: 306 DNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGS--SDHTIKVWSFD 358
DN V +W+ +++ V GH V + A +N + S + +D TIK+W D
Sbjct: 259 DNLVYIWNLQTKEIVQKLQGHTDVVISTA-CHPTENIIASAALENDKTIKLWKSD 312
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 44/103 (42%), Gaps = 3/103 (2%)
Query: 2 FALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPD-TDKSLLFSGSDDATVRVWD 60
+ L D + +WD G C + GHK I + T + SGS+D V +W+
Sbjct: 207 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 266
Query: 61 LLAKKCVATLDKHFSRVTSMAITSDGSTLISAG--RDKVVNLW 101
L K+ V L H V S A + + SA DK + LW
Sbjct: 267 LQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 309
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 87/165 (52%)
Query: 369 NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSV 428
N K +A H K ++S+ +PN + + S D+ +W D T GHK GI V
Sbjct: 12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 71
Query: 429 EFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLV 488
+S ++++AS DKT+KIW +S G CLKT +GH++ V +F + IVS D V
Sbjct: 72 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 131
Query: 489 KLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 533
++W V+TG+C+ T H D + A+ + + + D L +W
Sbjct: 132 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 176
Score = 99.4 bits (246), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 83/314 (26%), Positives = 145/314 (46%), Gaps = 21/314 (6%)
Query: 226 KMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIV 285
K L L G+ + + +KF E +LA ++ + ++++ ++GH
Sbjct: 10 KPNYALKFTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTISGHK--- 65
Query: 286 LCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVS 345
L + A SS L+V+ S D ++++WD S C+ GH V F+ + N +VS
Sbjct: 66 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVS 124
Query: 346 GSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTAC 405
GS D ++++W D + LK + AH ++++ + SL+ + S D
Sbjct: 125 GSFDESVRIW-------DVKTGKCLK---TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 174
Query: 406 VWRLPDLVSVVTFRGHKRGIWS-VEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHT 464
+W + T S V+FSP + ++ A+ D T+K+W S G CLKT+ GH
Sbjct: 175 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 234
Query: 465 SS--VLRASF-LTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMF 521
+ + A+F +T G IVS D LV +W ++T E + H D + + A +
Sbjct: 235 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENII 294
Query: 522 ATGG--SDALVNLW 533
A+ +D + LW
Sbjct: 295 ASAALENDKTIKLW 308
Score = 72.8 bits (177), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 67/136 (49%), Gaps = 2/136 (1%)
Query: 398 GSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCL 457
G+Q + V P+ T GH + + SV+FSP + + ++S DK IKIW DG
Sbjct: 1 GTQSKPTPV--KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE 58
Query: 458 KTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKK 517
KT GH + ++ + +VS D +K+W V +G+C+ T H + ++ +
Sbjct: 59 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 118
Query: 518 TEMFATGGSDALVNLW 533
+ + +G D V +W
Sbjct: 119 SNLIVSGSFDESVRIW 134
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 83/355 (23%), Positives = 133/355 (37%), Gaps = 90/355 (25%)
Query: 8 ADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCV 67
AD+ + +W G GHK +S + + D++ LL S SDD T+++WD+ + KC+
Sbjct: 43 ADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN--LLVSASDDKTLKIWDVSSGKCL 100
Query: 68 ATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTY-EMVEAVCAIPP 126
TL H + V + ++S D+ V +WD++ C T+P + + V AV
Sbjct: 101 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 160
Query: 127 GSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWN-ADSACLYEQKSSDVTISFE 185
GS S SSY+ G+ R+W+ A CL
Sbjct: 161 GSLIVS--SSYD---------------------GLCRIWDTASGQCLKTL---------- 187
Query: 186 MDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDL 245
+DD + P+ + +L T D L L
Sbjct: 188 IDDDNPPVSFVKFSPNGKYILAATLDNTLKL----------------------------- 218
Query: 246 KFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSK 305
+D S C GH C+ +G IV+GS+
Sbjct: 219 ---------------------WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 257
Query: 306 DNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGS--SDHTIKVWSFD 358
DN V +W+ +++ V GH V + A +N + S + +D TIK+W D
Sbjct: 258 DNLVYIWNLQTKEIVQKLQGHTDVVISTA-CHPTENIIASAALENDKTIKLWKSD 311
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 44/103 (42%), Gaps = 3/103 (2%)
Query: 2 FALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPD-TDKSLLFSGSDDATVRVWD 60
+ L D + +WD G C + GHK I + T + SGS+D V +W+
Sbjct: 206 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 265
Query: 61 LLAKKCVATLDKHFSRVTSMAITSDGSTLISAG--RDKVVNLW 101
L K+ V L H V S A + + SA DK + LW
Sbjct: 266 LQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 308
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 87/165 (52%)
Query: 369 NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSV 428
N K +A H K ++S+ +PN + + S D+ +W D T GHK GI V
Sbjct: 11 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 70
Query: 429 EFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLV 488
+S ++++AS DKT+KIW +S G CLKT +GH++ V +F + IVS D V
Sbjct: 71 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 130
Query: 489 KLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 533
++W V+TG+C+ T H D + A+ + + + D L +W
Sbjct: 131 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 175
Score = 99.4 bits (246), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 82/314 (26%), Positives = 145/314 (46%), Gaps = 21/314 (6%)
Query: 226 KMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIV 285
K L L G+ + + +KF ++LA ++ + ++++ ++GH
Sbjct: 9 KPNYALKFTLAGHTKAVSSVKF-SPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK--- 64
Query: 286 LCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVS 345
L + A SS L+V+ S D ++++WD S C+ GH V F+ + N +VS
Sbjct: 65 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVS 123
Query: 346 GSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTAC 405
GS D ++++W D + LK + AH ++++ + SL+ + S D
Sbjct: 124 GSFDESVRIW-------DVKTGKCLK---TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 173
Query: 406 VWRLPDLVSVVTFRGHKRGIWS-VEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHT 464
+W + T S V+FSP + ++ A+ D T+K+W S G CLKT+ GH
Sbjct: 174 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 233
Query: 465 SS--VLRASF-LTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMF 521
+ + A+F +T G IVS D LV +W ++T E + H D + + A +
Sbjct: 234 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENII 293
Query: 522 ATGG--SDALVNLW 533
A+ +D + LW
Sbjct: 294 ASAALENDKTIKLW 307
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 83/355 (23%), Positives = 133/355 (37%), Gaps = 90/355 (25%)
Query: 8 ADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCV 67
AD+ + +W G GHK +S + + +D +LL S SDD T+++WD+ + KC+
Sbjct: 42 ADKLIKIWGAYDGKFEKTISGHKLGISDVAW--SSDSNLLVSASDDKTLKIWDVSSGKCL 99
Query: 68 ATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTY-EMVEAVCAIPP 126
TL H + V + ++S D+ V +WD++ C T+P + + V AV
Sbjct: 100 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 159
Query: 127 GSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWN-ADSACLYEQKSSDVTISFE 185
GS S SSY+ G+ R+W+ A CL
Sbjct: 160 GSLIVS--SSYD---------------------GLCRIWDTASGQCLKTL---------- 186
Query: 186 MDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDL 245
+DD + P+ + +L T D L L
Sbjct: 187 IDDDNPPVSFVKFSPNGKYILAATLDNTLKL----------------------------- 217
Query: 246 KFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSK 305
+D S C GH C+ +G IV+GS+
Sbjct: 218 ---------------------WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 256
Query: 306 DNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGS--SDHTIKVWSFD 358
DN V +W+ +++ V GH V + A +N + S + +D TIK+W D
Sbjct: 257 DNLVYIWNLQTKEIVQKLQGHTDVVISTA-CHPTENIIASAALENDKTIKLWKSD 310
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 44/103 (42%), Gaps = 3/103 (2%)
Query: 2 FALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPD-TDKSLLFSGSDDATVRVWD 60
+ L D + +WD G C + GHK I + T + SGS+D V +W+
Sbjct: 205 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 264
Query: 61 LLAKKCVATLDKHFSRVTSMAITSDGSTLISAG--RDKVVNLW 101
L K+ V L H V S A + + SA DK + LW
Sbjct: 265 LQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 307
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 87/165 (52%)
Query: 369 NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSV 428
N K +A H K ++S+ +PN + + S D+ +W D T GHK GI V
Sbjct: 18 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 77
Query: 429 EFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLV 488
+S ++++AS DKT+KIW +S G CLKT +GH++ V +F + IVS D V
Sbjct: 78 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 137
Query: 489 KLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 533
++W V+TG+C+ T H D + A+ + + + D L +W
Sbjct: 138 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 182
Score = 99.0 bits (245), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 83/314 (26%), Positives = 145/314 (46%), Gaps = 21/314 (6%)
Query: 226 KMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIV 285
K L L G+ + + +KF E +LA ++ + ++++ ++GH
Sbjct: 16 KPNYALKFTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTISGHK--- 71
Query: 286 LCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVS 345
L + A SS L+V+ S D ++++WD S C+ GH V F+ + N +VS
Sbjct: 72 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVS 130
Query: 346 GSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTAC 405
GS D ++++W D + LK + AH ++++ + SL+ + S D
Sbjct: 131 GSFDESVRIW-------DVKTGKCLK---TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 180
Query: 406 VWRLPDLVSVVTFRGHKRGIWS-VEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHT 464
+W + T S V+FSP + ++ A+ D T+K+W S G CLKT+ GH
Sbjct: 181 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 240
Query: 465 SS--VLRASF-LTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMF 521
+ + A+F +T G IVS D LV +W ++T E + H D + + A +
Sbjct: 241 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENII 300
Query: 522 ATGG--SDALVNLW 533
A+ +D + LW
Sbjct: 301 ASAALENDKTIKLW 314
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 83/355 (23%), Positives = 133/355 (37%), Gaps = 90/355 (25%)
Query: 8 ADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCV 67
AD+ + +W G GHK +S + + D++ LL S SDD T+++WD+ + KC+
Sbjct: 49 ADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN--LLVSASDDKTLKIWDVSSGKCL 106
Query: 68 ATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTY-EMVEAVCAIPP 126
TL H + V + ++S D+ V +WD++ C T+P + + V AV
Sbjct: 107 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 166
Query: 127 GSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWN-ADSACLYEQKSSDVTISFE 185
GS S SSY+ G+ R+W+ A CL
Sbjct: 167 GSLIVS--SSYD---------------------GLCRIWDTASGQCLKTL---------- 193
Query: 186 MDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDL 245
+DD + P+ + +L T D L L
Sbjct: 194 IDDDNPPVSFVKFSPNGKYILAATLDNTLKL----------------------------- 224
Query: 246 KFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSK 305
+D S C GH C+ +G IV+GS+
Sbjct: 225 ---------------------WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 263
Query: 306 DNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGS--SDHTIKVWSFD 358
DN V +W+ +++ V GH V + A +N + S + +D TIK+W D
Sbjct: 264 DNLVYIWNLQTKEIVQKLQGHTDVVISTA-CHPTENIIASAALENDKTIKLWKSD 317
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 44/103 (42%), Gaps = 3/103 (2%)
Query: 2 FALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPD-TDKSLLFSGSDDATVRVWD 60
+ L D + +WD G C + GHK I + T + SGS+D V +W+
Sbjct: 212 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 271
Query: 61 LLAKKCVATLDKHFSRVTSMAITSDGSTLISAG--RDKVVNLW 101
L K+ V L H V S A + + SA DK + LW
Sbjct: 272 LQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 87/165 (52%)
Query: 369 NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSV 428
N K +A H K ++S+ +PN + + S D+ +W D T GHK GI V
Sbjct: 18 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 77
Query: 429 EFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLV 488
+S ++++AS DKT+KIW +S G CLKT +GH++ V +F + IVS D V
Sbjct: 78 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 137
Query: 489 KLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 533
++W V+TG+C+ T H D + A+ + + + D L +W
Sbjct: 138 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 182
Score = 99.4 bits (246), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 82/314 (26%), Positives = 145/314 (46%), Gaps = 21/314 (6%)
Query: 226 KMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIV 285
K L L G+ + + +KF ++LA ++ + ++++ ++GH
Sbjct: 16 KPNYALKFTLAGHTKAVSSVKF-SPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK--- 71
Query: 286 LCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVS 345
L + A SS L+V+ S D ++++WD S C+ GH V F+ + N +VS
Sbjct: 72 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVS 130
Query: 346 GSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTAC 405
GS D ++++W D + LK + AH ++++ + SL+ + S D
Sbjct: 131 GSFDESVRIW-------DVKTGKCLK---TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 180
Query: 406 VWRLPDLVSVVTFRGHKRGIWS-VEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHT 464
+W + T S V+FSP + ++ A+ D T+K+W S G CLKT+ GH
Sbjct: 181 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 240
Query: 465 SS--VLRASF-LTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMF 521
+ + A+F +T G IVS D LV +W ++T E + H D + + A +
Sbjct: 241 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENII 300
Query: 522 ATGG--SDALVNLW 533
A+ +D + LW
Sbjct: 301 ASAALENDKTIKLW 314
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 83/355 (23%), Positives = 133/355 (37%), Gaps = 90/355 (25%)
Query: 8 ADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCV 67
AD+ + +W G GHK +S + + +D +LL S SDD T+++WD+ + KC+
Sbjct: 49 ADKLIKIWGAYDGKFEKTISGHKLGISDVAW--SSDSNLLVSASDDKTLKIWDVSSGKCL 106
Query: 68 ATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTY-EMVEAVCAIPP 126
TL H + V + ++S D+ V +WD++ C T+P + + V AV
Sbjct: 107 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 166
Query: 127 GSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWN-ADSACLYEQKSSDVTISFE 185
GS S SSY+ G+ R+W+ A CL
Sbjct: 167 GSLIVS--SSYD---------------------GLCRIWDTASGQCLKTL---------- 193
Query: 186 MDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDL 245
+DD + P+ + +L T D L L
Sbjct: 194 IDDDNPPVSFVKFSPNGKYILAATLDNTLKL----------------------------- 224
Query: 246 KFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSK 305
+D S C GH C+ +G IV+GS+
Sbjct: 225 ---------------------WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 263
Query: 306 DNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGS--SDHTIKVWSFD 358
DN V +W+ +++ V GH V + A +N + S + +D TIK+W D
Sbjct: 264 DNLVYIWNLQTKEIVQKLQGHTDVVISTA-CHPTENIIASAALENDKTIKLWKSD 317
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 44/103 (42%), Gaps = 3/103 (2%)
Query: 2 FALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPD-TDKSLLFSGSDDATVRVWD 60
+ L D + +WD G C + GHK I + T + SGS+D V +W+
Sbjct: 212 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 271
Query: 61 LLAKKCVATLDKHFSRVTSMAITSDGSTLISAG--RDKVVNLW 101
L K+ V L H V S A + + SA DK + LW
Sbjct: 272 LQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 87/165 (52%)
Query: 369 NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSV 428
N K +A H K ++S+ +PN + + S D+ +W D T GHK GI V
Sbjct: 17 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 76
Query: 429 EFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLV 488
+S ++++AS DKT+KIW +S G CLKT +GH++ V +F + IVS D V
Sbjct: 77 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 136
Query: 489 KLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 533
++W V+TG+C+ T H D + A+ + + + D L +W
Sbjct: 137 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 181
Score = 99.0 bits (245), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 83/314 (26%), Positives = 145/314 (46%), Gaps = 21/314 (6%)
Query: 226 KMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIV 285
K L L G+ + + +KF E +LA ++ + ++++ ++GH
Sbjct: 15 KPNYALKFTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTISGHK--- 70
Query: 286 LCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVS 345
L + A SS L+V+ S D ++++WD S C+ GH V F+ + N +VS
Sbjct: 71 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVS 129
Query: 346 GSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTAC 405
GS D ++++W D + LK + AH ++++ + SL+ + S D
Sbjct: 130 GSFDESVRIW-------DVKTGKCLK---TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 179
Query: 406 VWRLPDLVSVVTFRGHKRGIWS-VEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHT 464
+W + T S V+FSP + ++ A+ D T+K+W S G CLKT+ GH
Sbjct: 180 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 239
Query: 465 SS--VLRASF-LTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMF 521
+ + A+F +T G IVS D LV +W ++T E + H D + + A +
Sbjct: 240 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENII 299
Query: 522 ATGG--SDALVNLW 533
A+ +D + LW
Sbjct: 300 ASAALENDKTIKLW 313
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 83/355 (23%), Positives = 133/355 (37%), Gaps = 90/355 (25%)
Query: 8 ADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCV 67
AD+ + +W G GHK +S + + D++ LL S SDD T+++WD+ + KC+
Sbjct: 48 ADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN--LLVSASDDKTLKIWDVSSGKCL 105
Query: 68 ATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTY-EMVEAVCAIPP 126
TL H + V + ++S D+ V +WD++ C T+P + + V AV
Sbjct: 106 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 165
Query: 127 GSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWN-ADSACLYEQKSSDVTISFE 185
GS S SSY+ G+ R+W+ A CL
Sbjct: 166 GSLIVS--SSYD---------------------GLCRIWDTASGQCLKTL---------- 192
Query: 186 MDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDL 245
+DD + P+ + +L T D L L
Sbjct: 193 IDDDNPPVSFVKFSPNGKYILAATLDNTLKL----------------------------- 223
Query: 246 KFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSK 305
+D S C GH C+ +G IV+GS+
Sbjct: 224 ---------------------WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 262
Query: 306 DNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGS--SDHTIKVWSFD 358
DN V +W+ +++ V GH V + A +N + S + +D TIK+W D
Sbjct: 263 DNLVYIWNLQTKEIVQKLQGHTDVVISTA-CHPTENIIASAALENDKTIKLWKSD 316
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 44/103 (42%), Gaps = 3/103 (2%)
Query: 2 FALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPD-TDKSLLFSGSDDATVRVWD 60
+ L D + +WD G C + GHK I + T + SGS+D V +W+
Sbjct: 211 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 270
Query: 61 LLAKKCVATLDKHFSRVTSMAITSDGSTLISAG--RDKVVNLW 101
L K+ V L H V S A + + SA DK + LW
Sbjct: 271 LQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 313
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 103 bits (258), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 86/165 (52%)
Query: 369 NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSV 428
N K +A H K ++S+ +PN + S D+ +W D T GHK GI V
Sbjct: 15 NYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDV 74
Query: 429 EFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLV 488
+S ++++AS DKT+KIW +S G CLKT +GH++ V +F + IVS D V
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 134
Query: 489 KLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 533
++W V+TG+C+ T H D + A+ + + + D L +W
Sbjct: 135 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179
Score = 99.8 bits (247), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 83/314 (26%), Positives = 145/314 (46%), Gaps = 21/314 (6%)
Query: 226 KMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIV 285
K L L G+ + + +KF E +LA ++ + ++++ ++GH
Sbjct: 13 KPNYALKFTLAGHTKAVSSVKFSPNGE-WLAASSADKLIKIWGAYDGKFEKTISGHK--- 68
Query: 286 LCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVS 345
L + A SS L+V+ S D ++++WD S C+ GH V F+ + N +VS
Sbjct: 69 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVS 127
Query: 346 GSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTAC 405
GS D ++++W D + LK + AH ++++ + SL+ + S D
Sbjct: 128 GSFDESVRIW-------DVKTGKCLK---TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 177
Query: 406 VWRLPDLVSVVTFRGHKRGIWS-VEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHT 464
+W + T S V+FSP + ++ A+ D T+K+W S G CLKT+ GH
Sbjct: 178 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 237
Query: 465 SS--VLRASF-LTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMF 521
+ + A+F +T G IVS D LV +W ++T E + H D + + A +
Sbjct: 238 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENII 297
Query: 522 ATGG--SDALVNLW 533
A+ +D + LW
Sbjct: 298 ASAALENDKTIKLW 311
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 83/355 (23%), Positives = 133/355 (37%), Gaps = 90/355 (25%)
Query: 8 ADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCV 67
AD+ + +W G GHK +S + + D++ LL S SDD T+++WD+ + KC+
Sbjct: 46 ADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN--LLVSASDDKTLKIWDVSSGKCL 103
Query: 68 ATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTY-EMVEAVCAIPP 126
TL H + V + ++S D+ V +WD++ C T+P + + V AV
Sbjct: 104 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 163
Query: 127 GSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWN-ADSACLYEQKSSDVTISFE 185
GS S SSY+ G+ R+W+ A CL
Sbjct: 164 GSLIVS--SSYD---------------------GLCRIWDTASGQCLKTL---------- 190
Query: 186 MDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDL 245
+DD + P+ + +L T D L L
Sbjct: 191 IDDDNPPVSFVKFSPNGKYILAATLDNTLKL----------------------------- 221
Query: 246 KFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSK 305
+D S C GH C+ +G IV+GS+
Sbjct: 222 ---------------------WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 260
Query: 306 DNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGS--SDHTIKVWSFD 358
DN V +W+ +++ V GH V + A +N + S + +D TIK+W D
Sbjct: 261 DNLVYIWNLQTKEIVQKLQGHTDVVISTA-CHPTENIIASAALENDKTIKLWKSD 314
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 44/103 (42%), Gaps = 3/103 (2%)
Query: 2 FALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPD-TDKSLLFSGSDDATVRVWD 60
+ L D + +WD G C + GHK I + T + SGS+D V +W+
Sbjct: 209 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 268
Query: 61 LLAKKCVATLDKHFSRVTSMAITSDGSTLISAG--RDKVVNLW 101
L K+ V L H V S A + + SA DK + LW
Sbjct: 269 LQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 84/159 (52%)
Query: 375 VVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVD 434
+A H K ++S+ +PN + + S D+ +W D T GHK GI V +S
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 435 QVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVR 494
++++AS DKT+KIW +S G CLKT +GH++ V +F + IVS D V++W V+
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 495 TGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 533
TG C+ T H D + A+ + + + D L +W
Sbjct: 141 TGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179
Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 82/314 (26%), Positives = 145/314 (46%), Gaps = 21/314 (6%)
Query: 226 KMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIV 285
K L L G+ + + +KF E +LA ++ + ++++ ++GH
Sbjct: 13 KPNYALMFTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTISGHK--- 68
Query: 286 LCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVS 345
L + A SS L+V+ S D ++++WD S C+ GH V F+ + N +VS
Sbjct: 69 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVS 127
Query: 346 GSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTAC 405
GS D ++++W D + M LK + AH ++++ + SL+ + S D
Sbjct: 128 GSFDESVRIW-------DVKTGMCLK---TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 177
Query: 406 VWRLPDLVSVVTFRGHKRGIWS-VEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHT 464
+W + T S V+FSP + ++ A+ D +K+W S G CLKT+ GH
Sbjct: 178 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHK 237
Query: 465 SS--VLRASF-LTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMF 521
+ + A+F +T G IVS D +V +W ++T E + H D + + A +
Sbjct: 238 NEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENII 297
Query: 522 ATGG--SDALVNLW 533
A+ +D + LW
Sbjct: 298 ASAALENDKTIKLW 311
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 83/355 (23%), Positives = 133/355 (37%), Gaps = 90/355 (25%)
Query: 8 ADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCV 67
AD+ + +W G GHK +S + + +D +LL S SDD T+++WD+ + KC+
Sbjct: 46 ADKLIKIWGAYDGKFEKTISGHKLGISDVAW--SSDSNLLVSASDDKTLKIWDVSSGKCL 103
Query: 68 ATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTY-EMVEAVCAIPP 126
TL H + V + ++S D+ V +WD++ C T+P + + V AV
Sbjct: 104 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRD 163
Query: 127 GSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWN-ADSACLYEQKSSDVTISFE 185
GS S SSY+ G+ R+W+ A CL
Sbjct: 164 GSLIVS--SSYD---------------------GLCRIWDTASGQCLKTL---------- 190
Query: 186 MDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDL 245
+DD + P+ + +L T D L L
Sbjct: 191 IDDDNPPVSFVKFSPNGKYILAATLDNDLKL----------------------------- 221
Query: 246 KFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSK 305
+D S C GH C+ +G IV+GS+
Sbjct: 222 ---------------------WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 260
Query: 306 DNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGS--SDHTIKVWSFD 358
DN V +W+ +++ V GH V + A +N + S + +D TIK+W D
Sbjct: 261 DNMVYIWNLQTKEIVQKLQGHTDVVISTA-CHPTENIIASAALENDKTIKLWKSD 314
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 44/103 (42%), Gaps = 3/103 (2%)
Query: 2 FALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPD-TDKSLLFSGSDDATVRVWD 60
+ L D + +WD G C + GHK I + T + SGS+D V +W+
Sbjct: 209 YILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWN 268
Query: 61 LLAKKCVATLDKHFSRVTSMAITSDGSTLISAG--RDKVVNLW 101
L K+ V L H V S A + + SA DK + LW
Sbjct: 269 LQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 84/159 (52%)
Query: 375 VVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVD 434
+A H K ++S+ +PN + + S D+ +W D T GHK GI V +S
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 435 QVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVR 494
++++AS DKT+KIW +S G CLKT +GH++ V +F + IVS D V++W V+
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 495 TGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 533
TG C+ T H D + A+ + + + D L +W
Sbjct: 141 TGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 82/314 (26%), Positives = 146/314 (46%), Gaps = 21/314 (6%)
Query: 226 KMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIV 285
K L L G+ + + +KF ++LA ++ + ++++ ++GH
Sbjct: 13 KPNYALMFTLAGHTKAVSSVKF-SPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK--- 68
Query: 286 LCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVS 345
L + A SS L+V+ S D ++++WD S C+ GH V F+ + N +VS
Sbjct: 69 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVS 127
Query: 346 GSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTAC 405
GS D ++++W D + M LK + AH ++++ + SL+ + S D
Sbjct: 128 GSFDESVRIW-------DVKTGMCLK---TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 177
Query: 406 VWRLPDLVSVVTFRGHKRGIWS-VEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHT 464
+W + T S V+FSP + ++ A+ D T+K+W S G CLKT+ GH
Sbjct: 178 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 237
Query: 465 SS--VLRASF-LTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMF 521
+ + A+F +T G IVS D +V +W ++T E + H D + + A +
Sbjct: 238 NEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENII 297
Query: 522 ATGG--SDALVNLW 533
A+ +D + LW
Sbjct: 298 ASAALENDKTIKLW 311
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 83/355 (23%), Positives = 133/355 (37%), Gaps = 90/355 (25%)
Query: 8 ADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCV 67
AD+ + +W G GHK +S + + D++ LL S SDD T+++WD+ + KC+
Sbjct: 46 ADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN--LLVSASDDKTLKIWDVSSGKCL 103
Query: 68 ATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTY-EMVEAVCAIPP 126
TL H + V + ++S D+ V +WD++ C T+P + + V AV
Sbjct: 104 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRD 163
Query: 127 GSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWN-ADSACLYEQKSSDVTISFE 185
GS S SSY+ G+ R+W+ A CL
Sbjct: 164 GSLIVS--SSYD---------------------GLCRIWDTASGQCLKTL---------- 190
Query: 186 MDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDL 245
+DD + P+ + +L T D L L
Sbjct: 191 IDDDNPPVSFVKFSPNGKYILAATLDNTLKL----------------------------- 221
Query: 246 KFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSK 305
+D S C GH C+ +G IV+GS+
Sbjct: 222 ---------------------WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 260
Query: 306 DNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGS--SDHTIKVWSFD 358
DN V +W+ +++ V GH V + A +N + S + +D TIK+W D
Sbjct: 261 DNMVYIWNLQTKEIVQKLQGHTDVVISTA-CHPTENIIASAALENDKTIKLWKSD 314
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 44/103 (42%), Gaps = 3/103 (2%)
Query: 2 FALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPD-TDKSLLFSGSDDATVRVWD 60
+ L D + +WD G C + GHK I + T + SGS+D V +W+
Sbjct: 209 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWN 268
Query: 61 LLAKKCVATLDKHFSRVTSMAITSDGSTLISAG--RDKVVNLW 101
L K+ V L H V S A + + SA DK + LW
Sbjct: 269 LQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 100 bits (248), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 122/258 (47%), Gaps = 27/258 (10%)
Query: 277 VLAGHSE-IVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAF 335
VL GH + ++ CL C IV+GS DN++++W + + C+ GH G V +
Sbjct: 113 VLKGHDDHVITCLQFCGNR-----IVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWS--- 164
Query: 336 SKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLV 395
S+ N ++SGS+D T+KVW+ + + + +G + ++ V
Sbjct: 165 SQMRDNIIISGSTDRTLKVWNAE------------TGECIHTLYGHTSTVRCMHLHEKRV 212
Query: 396 CTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGS 455
+GS+D T VW + + GH + V++ + V++ + D +K+W +
Sbjct: 213 VSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYD--GRRVVSGAYDFMVKVWDPETET 270
Query: 456 CLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVG 515
CL T +GHT+ V F G +VS D +++W V TG CI T H+ + +
Sbjct: 271 CLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL- 327
Query: 516 KKTEMFATGGSDALVNLW 533
K + +G +D+ V +W
Sbjct: 328 -KDNILVSGNADSTVKIW 344
Score = 99.8 bits (247), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 80/321 (24%), Positives = 149/321 (46%), Gaps = 39/321 (12%)
Query: 220 VEVPEKKMELILSKRLVGYNEEILD-LKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVL 278
++ ++ EL K L G+++ ++ L+F G + ++ ++V+ + C L
Sbjct: 99 IDTNWRRGELKSPKVLKGHDDHVITCLQFCGNR---IVSGSDDNTLKVWSAVTGKCLRTL 155
Query: 279 AGHSEIVLCLDTCALSSGKI---LIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAF 335
GH T + S ++ +I++GS D ++++W++E+ C+ GH V +
Sbjct: 156 VGH--------TGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHL 207
Query: 336 SKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLV 395
+K +VSGS D T++VW + Q +++ V A V + V
Sbjct: 208 HEKR---VVSGSRDATLRVWDIE-----TGQCLHVLMGHVAAVR-------CVQYDGRRV 252
Query: 396 CTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGS 455
+G+ D VW + T +GH ++S++F + V++ S D +I++W + G+
Sbjct: 253 VSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIH--VVSGSLDTSIRVWDVETGN 310
Query: 456 CLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATY---DKHEDKIWAL 512
C+ T GH S L + + +VS AD VK+W ++TG+C+ T +KH+ + L
Sbjct: 311 CIHTLTGHQS--LTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCL 368
Query: 513 AVGKKTEMFATGGSDALVNLW 533
K T D V LW
Sbjct: 369 QFNK--NFVITSSDDGTVKLW 387
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 118/239 (49%), Gaps = 27/239 (11%)
Query: 264 VQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVG 323
++V++ + C + L GH+ V C+ L ++ V+GS+D ++R+WD E+ C+ V
Sbjct: 181 LKVWNAETGECIHTLYGHTSTVRCMH---LHEKRV--VSGSRDATLRVWDIETGQCLHVL 235
Query: 324 TGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDI 383
GH+ AV V + + +VSG+ D +KVW D E L + H +
Sbjct: 236 MGHVAAVRCVQYDGRR---VVSGAYDFMVKVW-------DPETETCLHT---LQGHTNRV 282
Query: 384 NSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGD 443
SL + V +GS D + VW + + T GH+ +E D ++++ + D
Sbjct: 283 YSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNAD 338
Query: 444 KTIKIWSISDGSCLKTFEG---HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECI 499
T+KIW I G CL+T +G H S+V F +++ DG VKLW ++TGE I
Sbjct: 339 STVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITSSDDGTVKLWDLKTGEFI 395
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 79/168 (47%), Gaps = 7/168 (4%)
Query: 370 LKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVE 429
LK+ V+ H + + + +V +GS D T VW + T GH G+WS +
Sbjct: 108 LKSPKVLKGHDDHVITCLQFCGNRIV-SGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQ 166
Query: 430 FSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVK 489
D ++I+ S D+T+K+W+ G C+ T GHTS+V R L ++VS D ++
Sbjct: 167 MR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTV-RCMHLHE-KRVVSGSRDATLR 222
Query: 490 LWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDST 537
+W + TG+C+ H + V +G D +V +W T
Sbjct: 223 VWDIETGQCLHVLMGHVAAV--RCVQYDGRRVVSGAYDFMVKVWDPET 268
Score = 66.2 bits (160), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 97/213 (45%), Gaps = 25/213 (11%)
Query: 251 EEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVR 310
E+ + + ++V+D+ + C +VL GH V C+ G+ +V+G+ D V+
Sbjct: 208 HEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQ----YDGR-RVVSGAYDFMVK 262
Query: 311 LWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNL 370
+WD E+ C+ GH V ++ F +VSGS D +I+VW +
Sbjct: 263 VWDPETETCLHTLQGHTNRVYSLQFDGI---HVVSGSLDTSIRVWDVE------------ 307
Query: 371 KAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG---HKRGIWS 427
+ G + + D+++ +G+ D T +W + + T +G H+ +
Sbjct: 308 TGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTC 367
Query: 428 VEFSPVDQVVITASGDKTIKIWSISDGSCLKTF 460
++F+ VIT+S D T+K+W + G ++
Sbjct: 368 LQFNK--NFVITSSDDGTVKLWDLKTGEFIRNL 398
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 6/108 (5%)
Query: 8 ADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCV 67
DR + VW+ + G C H GH V + H + + SGS DAT+RVWD+ +C+
Sbjct: 177 TDRTLKVWNAETGECIHTLYGHTSTVRCMHLH----EKRVVSGSRDATLRVWDIETGQCL 232
Query: 68 ATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTY 115
L H + V + DG ++S D +V +WD +C T+ +
Sbjct: 233 HVLMGHVAAV--RCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGH 278
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 54/108 (50%), Gaps = 6/108 (5%)
Query: 9 DRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVA 68
D + VWD++ G C H GH V + + D + SG+ D V+VWD + C+
Sbjct: 218 DATLRVWDIETGQCLHVLMGHVAAVRCVQY----DGRRVVSGAYDFMVKVWDPETETCLH 273
Query: 69 TLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYE 116
TL H +RV S+ DG ++S D + +WD+ +C T+ ++
Sbjct: 274 TLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQ 319
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 53/116 (45%), Gaps = 8/116 (6%)
Query: 9 DRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVA 68
D V VWD + C H +GH V S+ F D + SGS D ++RVWD+ C+
Sbjct: 258 DFMVKVWDPETETCLHTLQGHTNRVYSLQF----DGIHVVSGSLDTSIRVWDVETGNCIH 313
Query: 69 TLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTV--PTYEMVEAVC 122
TL H S + M + + L+S D V +WD++ C T+ P C
Sbjct: 314 TLTGHQSLTSGMELKDN--ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTC 367
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 7/106 (6%)
Query: 4 LLEGADRKVL-VWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLL 62
++ G+D L VW G C GH G V S +++ SGS D T++VW+
Sbjct: 132 IVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWS----SQMRDNIIISGSTDRTLKVWNAE 187
Query: 63 AKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSC 108
+C+ TL H S V M + ++S RD + +WD+ C
Sbjct: 188 TGECIHTLYGHTSTVRCMHLHE--KRVVSGSRDATLRVWDIETGQC 231
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 7/66 (10%)
Query: 8 ADRKVLVWDVDGGFCTHYFKG---HKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK 64
AD V +WD+ G C +G H+ V+ + F +K+ + + SDD TV++WDL
Sbjct: 337 ADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF----NKNFVITSSDDGTVKLWDLKTG 392
Query: 65 KCVATL 70
+ + L
Sbjct: 393 EFIRNL 398
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 82/300 (27%), Positives = 138/300 (46%), Gaps = 28/300 (9%)
Query: 251 EEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVR 310
E+ Y+ + + ++VYD + L+GH V L + G IL V+GS D +VR
Sbjct: 131 EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWAL---KYAHGGIL-VSGSTDRTVR 186
Query: 311 LWDSESRCCVGVGTGHMGAVGAVAFSK-KLQNFLVSGSSDHTIKVWSF---DGLSDDAEQ 366
+WD + CC V GH V + + K ++V+GS D+T+ VW + D E+
Sbjct: 187 VWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEE 246
Query: 367 ---PM-------NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVV 416
P+ N V+ H + + V+ + ++V +GS D T VW + + +
Sbjct: 247 HDYPLVFHTPEENPYFVGVLRGHMASVRT--VSGHGNIVVSGSYDNTLIVWDVAQMKCLY 304
Query: 417 TFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSV--LRASFLT 474
GH I+S + + I+AS D TI+IW + +G + T +GHT+ V LR S
Sbjct: 305 ILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--- 361
Query: 475 RGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 534
+VS ADG ++ W +Y H + A+ ++ GS+ N+++
Sbjct: 362 -DKFLVSAAADGSIRGWDANDYSRKFSY--HHTNLSAITTFYVSDNILVSGSENQFNIYN 418
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 87/380 (22%), Positives = 160/380 (42%), Gaps = 63/380 (16%)
Query: 30 KGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTL 89
+G ++S++ + + + +G+DD +RV+D + KK + L H V ++ + G L
Sbjct: 118 RGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKY-AHGGIL 176
Query: 90 ISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSL 149
+S D+ V +WD++ C F+ S+ I + +
Sbjct: 177 VSGSTDRTVRVWDIKKGCCT------------------HVFEGHNSTVRCLDIVEYK--- 215
Query: 150 EIHFITVGER-GIVRMWN--ADSACLYEQKSSDVTISFEMDDSK-------RGFTAATVL 199
I +I G R + +W +S+ + D + F + RG A+
Sbjct: 216 NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRT 275
Query: 200 PSNQGLLCVTA--DQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAV 257
S G + V+ D L+++ +V + K ILS G+ + I + E ++ ++
Sbjct: 276 VSGHGNIVVSGSYDNTLIVW---DVAQMKCLYILS----GHTDRIYSTIYDHERKRCISA 328
Query: 258 ATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSE-- 315
+ + ++++DL + Y L GH+ +V L S K L V+ + D S+R WD+
Sbjct: 329 SMD-TTIRIWDLENGELMYTLQGHTALVGLLRL----SDKFL-VSAAADGSIRGWDANDY 382
Query: 316 SRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFD-------GLSDDAEQ-- 366
SR + H + A+ N LVSGS + +++ + DA+Q
Sbjct: 383 SRKF----SYHHTNLSAITTFYVSDNILVSGSENQ-FNIYNLRSGKLVHANILKDADQIW 437
Query: 367 PMNLKAKAVVAAHGKDINSL 386
+N K K +VAA KD S
Sbjct: 438 SVNFKGKTLVAAVEKDGQSF 457
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 51/103 (49%), Gaps = 4/103 (3%)
Query: 9 DRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVA 68
D ++VWDV C + GH + S ++ D ++ S S D T+R+WDL + +
Sbjct: 289 DNTLIVWDVAQMKCLYILSGHTDRIYSTIY--DHERKRCISASMDTTIRIWDLENGELMY 346
Query: 69 TLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLT 111
TL H + V + ++ L+SA D + WD DYS K +
Sbjct: 347 TLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYSRKFS 387
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 49/124 (39%), Gaps = 25/124 (20%)
Query: 8 ADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKC- 66
DR V VWD+ G CTH F+GH V + + + +GS D T+ VW L +
Sbjct: 181 TDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSV 240
Query: 67 ----------------------VATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLR 104
V L H + V + ++ G+ ++S D + +WD+
Sbjct: 241 PDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRT--VSGHGNIVVSGSYDNTLIVWDVA 298
Query: 105 DYSC 108
C
Sbjct: 299 QMKC 302
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 26 FKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSD 85
+GH V ++ H + ++ SGS D T+ VWD+ KC+ L H R+ S +
Sbjct: 266 LRGHMASVRTVSGHGN----IVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHE 321
Query: 86 GSTLISAGRDKVVNLWDLRD 105
ISA D + +WDL +
Sbjct: 322 RKRCISASMDTTIRIWDLEN 341
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 8/104 (7%)
Query: 4 LLEGADRKVL-VWD-VDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDL 61
++ GAD K++ V+D ++ F GH G V ++ + +L SGS D TVRVWD+
Sbjct: 135 VITGADDKMIRVYDSINKKFLLQ-LSGHDGGVWALKY---AHGGILVSGSTDRTVRVWDI 190
Query: 62 LAKKCVATLDKHFSRVTSMAIT--SDGSTLISAGRDKVVNLWDL 103
C + H S V + I + +++ RD +++W L
Sbjct: 191 KKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL 234
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 95.9 bits (237), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 82/300 (27%), Positives = 136/300 (45%), Gaps = 28/300 (9%)
Query: 251 EEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVR 310
E+ Y+ + + ++VYD + L+GH V L + G IL V+GS D +VR
Sbjct: 131 EDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWAL---KYAHGGIL-VSGSTDRTVR 186
Query: 311 LWDSESRCCVGVGTGHMGAVGAVAFSK-KLQNFLVSGSSDHTIKVWSF---DGLSDDAEQ 366
+WD + CC V GH V + + K ++V+GS D+T+ VW + D E+
Sbjct: 187 VWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEE 246
Query: 367 ---PM-------NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVV 416
P+ N V+ H + + V+ + ++V +GS D T VW + +
Sbjct: 247 HDYPLVFHTPEENPYFVGVLRGHXASVRT--VSGHGNIVVSGSYDNTLIVWDVAQXKCLY 304
Query: 417 TFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSV--LRASFLT 474
GH I+S + + I+AS D TI+IW + +G T +GHT+ V LR S
Sbjct: 305 ILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTLQGHTALVGLLRLS--- 361
Query: 475 RGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 534
+VS ADG ++ W +Y H + A+ ++ GS+ N+++
Sbjct: 362 -DKFLVSAAADGSIRGWDANDYSRKFSY--HHTNLSAITTFYVSDNILVSGSENQFNIYN 418
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 90/384 (23%), Positives = 159/384 (41%), Gaps = 66/384 (17%)
Query: 26 FKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSD 85
+GH V + L D + + +G+DD +RV+D + KK + L H V ++ +
Sbjct: 117 LRGHXTSVITCLQFED---NYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKY-AH 172
Query: 86 GSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKK 145
G L+S D+ V +WD++ C F+ S+ I +
Sbjct: 173 GGILVSGSTDRTVRVWDIKKGCCT------------------HVFEGHNSTVRCLDIVEY 214
Query: 146 RRSLEIHFITVGER-GIVRMWN--ADSACLYEQKSSDVTISFEMDDSK-------RGFTA 195
+ I +I G R + +W +S+ + D + F + RG A
Sbjct: 215 K---NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXA 271
Query: 196 ATVLPSNQGLLCVTA--DQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQ 253
+ S G + V+ D L+++ +V + K ILS G+ + I + E ++
Sbjct: 272 SVRTVSGHGNIVVSGSYDNTLIVW---DVAQXKCLYILS----GHTDRIYSTIYDHERKR 324
Query: 254 YLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWD 313
++ + + ++++DL + Y L GH+ +V L S K L V+ + D S+R WD
Sbjct: 325 CISASXD-TTIRIWDLENGELXYTLQGHTALVGLLRL----SDKFL-VSAAADGSIRGWD 378
Query: 314 SE--SRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFD-------GLSDDA 364
+ SR + H + A+ N LVSGS + +++ + DA
Sbjct: 379 ANDYSRKF----SYHHTNLSAITTFYVSDNILVSGSENQ-FNIYNLRSGKLVHANILKDA 433
Query: 365 EQ--PMNLKAKAVVAAHGKDINSL 386
+Q +N K K +VAA KD S
Sbjct: 434 DQIWSVNFKGKTLVAAVEKDGQSF 457
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 4/103 (3%)
Query: 9 DRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVA 68
D ++VWDV C + GH + S ++ D ++ S S D T+R+WDL +
Sbjct: 289 DNTLIVWDVAQXKCLYILSGHTDRIYSTIY--DHERKRCISASXDTTIRIWDLENGELXY 346
Query: 69 TLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLT 111
TL H + V + ++ L+SA D + WD DYS K +
Sbjct: 347 TLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYSRKFS 387
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 53/129 (41%), Gaps = 26/129 (20%)
Query: 4 LLEGA-DRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLL 62
L+ G+ DR V VWD+ G CTH F+GH V + + + +GS D T+ VW L
Sbjct: 176 LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLP 235
Query: 63 AKKC-----------------------VATLDKHFSRVTSMAITSDGSTLISAGRDKVVN 99
+ V L H + V + ++ G+ ++S D +
Sbjct: 236 KESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRT--VSGHGNIVVSGSYDNTLI 293
Query: 100 LWDLRDYSC 108
+WD+ C
Sbjct: 294 VWDVAQXKC 302
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 8/104 (7%)
Query: 4 LLEGADRKVL-VWD-VDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDL 61
++ GAD K + V+D ++ F GH G V ++ + +L SGS D TVRVWD+
Sbjct: 135 VITGADDKXIRVYDSINKKFLLQ-LSGHDGGVWALKY---AHGGILVSGSTDRTVRVWDI 190
Query: 62 LAKKCVATLDKHFSRVTSMAIT--SDGSTLISAGRDKVVNLWDL 103
C + H S V + I + +++ RD +++W L
Sbjct: 191 KKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL 234
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 95.9 bits (237), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 120/557 (21%), Positives = 218/557 (39%), Gaps = 108/557 (19%)
Query: 7 GADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKC 66
GAD+ + V+ + G K H+ V F +D S + + S D V++WD K
Sbjct: 634 GADKTLQVFKAETGEKLLDIKAHEDEVLCCAF--SSDDSYIATCSADKKVKIWDSATGKL 691
Query: 67 VATLDKHFSRVTSMAITSDGSTLI--SAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAI 124
V T D+H +V T+ + L+ + D + LWDL C+ T+ + C
Sbjct: 692 VHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRF 751
Query: 125 PPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISF 184
P D L+S G +R+W+ SA E+KS +V
Sbjct: 752 SPD---DELLAS-------------------CSADGTLRLWDVRSA--NERKSINV---- 783
Query: 185 EMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILD 244
KR F ++ E P + +E+I+
Sbjct: 784 -----KRFFLSS------------------------EDPPEDVEVIVKC----------- 803
Query: 245 LKFLGEEEQYLAVATNIEQVQVYDL-SSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTG 303
+ + ++ + A N +V ++D+ +S + + GH + C S L V
Sbjct: 804 CSWSADGDKIIVAAKN--KVLLFDIHTSGLLAEIHTGHHSTI---QYCDFSPYDHLAVIA 858
Query: 304 SKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDD 363
V LW+ +SR V GH+ V V FS +FL + S D TI+VW + +
Sbjct: 859 LSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFL-TASDDQTIRVWETKKVCKN 917
Query: 364 AEQPM-------------------NLKAKAVVAAHGKDINSL--------AVAPNDSLVC 396
+ + N++ ++A I+ L ++P+ V
Sbjct: 918 SAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVA 977
Query: 397 TGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSC 456
G +D + LP+ + GHK+ + ++F+ + +I++S D I++W+ G
Sbjct: 978 FGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDY 1037
Query: 457 LKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGK 516
+ + H +V + L + ++++S DG VK+W V TG + H+ + + A+
Sbjct: 1038 V-FLQAHQETV-KDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISS 1095
Query: 517 KTEMFATGGSDALVNLW 533
F++ +D +W
Sbjct: 1096 DATKFSSTSADKTAKIW 1112
Score = 92.4 bits (228), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 121/529 (22%), Positives = 201/529 (37%), Gaps = 80/529 (15%)
Query: 8 ADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCV 67
AD+KV +WD G H + H V+ F ++ LL +GS+D +++WDL K+C
Sbjct: 677 ADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECR 736
Query: 68 ATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTY----------EM 117
T+ H + V + D L S D + LWD+R + + ++ E
Sbjct: 737 NTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPED 796
Query: 118 VEAVCAIPPGSA---------------FDSFLSSY-------NQQTIKKKRRSLEIHFIT 155
VE + SA FD S + TI+ S H
Sbjct: 797 VEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAV 856
Query: 156 VG-ERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTA----ATVLPSNQGLLCVTA 210
+ + V +WN DS K +D RG + P L +
Sbjct: 857 IALSQYCVELWNIDS----RLKVADC----------RGHLSWVHGVMFSPDGSSFLTASD 902
Query: 211 DQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLS 270
DQ + ++ T +V K ++L + + D+ F E LAV NI +Q+
Sbjct: 903 DQTIRVWETKKVC-KNSAIVLKQEI--------DVVFQENETMVLAV-DNIRGLQLIAGK 952
Query: 271 SMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAV 330
+ Y+ + C LS + G +D ++++ + + G GH AV
Sbjct: 953 TGQIDYLPEAQ------VSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAV 1006
Query: 331 GAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP 390
+ F+ + L+S S D I+VW++ + AH + + +
Sbjct: 1007 RHIQFTADGKT-LISSSEDSVIQVWNW-----------QTGDYVFLQAHQETVKDFRLL- 1053
Query: 391 NDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWS 450
DS + + S D T VW + F H+ + S S + S DKT KIWS
Sbjct: 1054 QDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWS 1113
Query: 451 ISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECI 499
S L +GH V ++F G + + +G +++W V G+ +
Sbjct: 1114 FDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLL 1162
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 61/123 (49%), Gaps = 2/123 (1%)
Query: 413 VSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASF 472
+S + R H ++ FS Q + + DKT++++ G L + H VL +F
Sbjct: 606 LSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAF 665
Query: 473 LTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTE--MFATGGSDALV 530
+ + I +C AD VK+W TG+ + TYD+H +++ K+ + ATG +D +
Sbjct: 666 SSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFL 725
Query: 531 NLW 533
LW
Sbjct: 726 KLW 728
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 81/173 (46%), Gaps = 13/173 (7%)
Query: 326 HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINS 385
H AV FS+ Q + S +D T++V+ ++ E+ +++KA H ++
Sbjct: 614 HTDAVYHACFSQDGQR-IASCGADKTLQVFK----AETGEKLLDIKA------HEDEVLC 662
Query: 386 LAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASG--D 443
A + +DS + T S D+ +W V T+ H + F+ ++ A+G D
Sbjct: 663 CAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSND 722
Query: 444 KTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTG 496
+K+W ++ C T GHT+SV F + SC ADG ++LW VR+
Sbjct: 723 FFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSA 775
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 77/341 (22%), Positives = 128/341 (37%), Gaps = 30/341 (8%)
Query: 248 LGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDN 307
++ Q +A + +QV+ + + H + VLC CA SS I T S D
Sbjct: 623 FSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLC---CAFSSDDSYIATCSADK 679
Query: 308 SVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLV-SGSSDHTIKVWSFDGLSDDAEQ 366
V++WDS + V H V F+ K + L+ +GS+D +K+W +
Sbjct: 680 KVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN-------- 731
Query: 367 PMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIW 426
+ + + H +N +P+D L+ + S D T +W + + KR
Sbjct: 732 --QKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINV-KRFFL 788
Query: 427 SVEFSPVDQVVI------TASGDKTI-------KIWSI-SDGSCLKTFEGHTSSVLRASF 472
S E P D VI +A GDK I ++ I + G + GH S++ F
Sbjct: 789 SSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDF 848
Query: 473 LTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNL 532
V + V+LW + + +A H + + F T D + +
Sbjct: 849 SPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRV 908
Query: 533 WHDSTXXXXXXXXXXXXXXVLRGQELENAVLDADYTKAIQV 573
W V+ QE E VL D + +Q+
Sbjct: 909 WETKKVCKNSAIVLKQEIDVVF-QENETMVLAVDNIRGLQL 948
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/164 (21%), Positives = 69/164 (42%), Gaps = 2/164 (1%)
Query: 372 AKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFS 431
++ VV H + + + + + D+T V++ ++ + H+ + FS
Sbjct: 607 SRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFS 666
Query: 432 PVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIV--SCGADGLVK 489
D + T S DK +KIW + G + T++ H+ V F + ++ + D +K
Sbjct: 667 SDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLK 726
Query: 490 LWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 533
LW + EC T H + + E+ A+ +D + LW
Sbjct: 727 LWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLW 770
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%)
Query: 463 HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFA 522
HT +V A F G +I SCGAD ++++ TGE + HED++ A A
Sbjct: 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIA 673
Query: 523 TGGSDALVNLWHDST 537
T +D V +W +T
Sbjct: 674 TCSADKKVKIWDSAT 688
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 40/95 (42%), Gaps = 11/95 (11%)
Query: 8 ADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDL----LA 63
AD+ +W D H KGH G V F D LL +G D+ +R+W++ L
Sbjct: 1105 ADKTAKIWSFDLLSPLHELKGHNGCVRCSAF--SLDGILLATGDDNGEIRIWNVSDGQLL 1162
Query: 64 KKCVAT-----LDKHFSRVTSMAITSDGSTLISAG 93
C H VT + + D TL+SAG
Sbjct: 1163 HSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG 1197
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 47/102 (46%), Gaps = 3/102 (2%)
Query: 4 LLEGADRKVLVWDVD-GGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLL 62
++ A KVL++D+ G GH + F P +++ V +W++
Sbjct: 813 IIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVI--ALSQYCVELWNID 870
Query: 63 AKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLR 104
++ VA H S V + + DGS+ ++A D+ + +W+ +
Sbjct: 871 SRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETK 912
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 95.9 bits (237), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 120/557 (21%), Positives = 218/557 (39%), Gaps = 108/557 (19%)
Query: 7 GADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKC 66
GAD+ + V+ + G K H+ V F +D S + + S D V++WD K
Sbjct: 641 GADKTLQVFKAETGEKLLDIKAHEDEVLCCAF--SSDDSYIATCSADKKVKIWDSATGKL 698
Query: 67 VATLDKHFSRVTSMAITSDGSTLI--SAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAI 124
V T D+H +V T+ + L+ + D + LWDL C+ T+ + C
Sbjct: 699 VHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRF 758
Query: 125 PPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISF 184
P D L+S G +R+W+ SA E+KS +V
Sbjct: 759 SPD---DELLAS-------------------CSADGTLRLWDVRSA--NERKSINV---- 790
Query: 185 EMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILD 244
KR F ++ E P + +E+I+
Sbjct: 791 -----KRFFLSS------------------------EDPPEDVEVIVKC----------- 810
Query: 245 LKFLGEEEQYLAVATNIEQVQVYDL-SSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTG 303
+ + ++ + A N +V ++D+ +S + + GH + C S L V
Sbjct: 811 CSWSADGDKIIVAAKN--KVLLFDIHTSGLLAEIHTGHHSTI---QYCDFSPYDHLAVIA 865
Query: 304 SKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDD 363
V LW+ +SR V GH+ V V FS +FL + S D TI+VW + +
Sbjct: 866 LSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFL-TASDDQTIRVWETKKVCKN 924
Query: 364 AEQPM-------------------NLKAKAVVAAHGKDINSL--------AVAPNDSLVC 396
+ + N++ ++A I+ L ++P+ V
Sbjct: 925 SAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVA 984
Query: 397 TGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSC 456
G +D + LP+ + GHK+ + ++F+ + +I++S D I++W+ G
Sbjct: 985 FGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDY 1044
Query: 457 LKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGK 516
+ + H +V + L + ++++S DG VK+W V TG + H+ + + A+
Sbjct: 1045 V-FLQAHQETV-KDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISS 1102
Query: 517 KTEMFATGGSDALVNLW 533
F++ +D +W
Sbjct: 1103 DATKFSSTSADKTAKIW 1119
Score = 92.4 bits (228), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 121/529 (22%), Positives = 201/529 (37%), Gaps = 80/529 (15%)
Query: 8 ADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCV 67
AD+KV +WD G H + H V+ F ++ LL +GS+D +++WDL K+C
Sbjct: 684 ADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECR 743
Query: 68 ATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTY----------EM 117
T+ H + V + D L S D + LWD+R + + ++ E
Sbjct: 744 NTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPED 803
Query: 118 VEAVCAIPPGSA---------------FDSFLSSY-------NQQTIKKKRRSLEIHFIT 155
VE + SA FD S + TI+ S H
Sbjct: 804 VEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAV 863
Query: 156 VG-ERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTA----ATVLPSNQGLLCVTA 210
+ + V +WN DS K +D RG + P L +
Sbjct: 864 IALSQYCVELWNIDS----RLKVADC----------RGHLSWVHGVMFSPDGSSFLTASD 909
Query: 211 DQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLS 270
DQ + ++ T +V K ++L + + D+ F E LAV NI +Q+
Sbjct: 910 DQTIRVWETKKVC-KNSAIVLKQEI--------DVVFQENETMVLAV-DNIRGLQLIAGK 959
Query: 271 SMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAV 330
+ Y+ + C LS + G +D ++++ + + G GH AV
Sbjct: 960 TGQIDYLPEAQ------VSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAV 1013
Query: 331 GAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP 390
+ F+ + L+S S D I+VW++ + AH + + +
Sbjct: 1014 RHIQFTADGKT-LISSSEDSVIQVWNW-----------QTGDYVFLQAHQETVKDFRLL- 1060
Query: 391 NDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWS 450
DS + + S D T VW + F H+ + S S + S DKT KIWS
Sbjct: 1061 QDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWS 1120
Query: 451 ISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECI 499
S L +GH V ++F G + + +G +++W V G+ +
Sbjct: 1121 FDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLL 1169
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 61/123 (49%), Gaps = 2/123 (1%)
Query: 413 VSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASF 472
+S + R H ++ FS Q + + DKT++++ G L + H VL +F
Sbjct: 613 LSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAF 672
Query: 473 LTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTE--MFATGGSDALV 530
+ + I +C AD VK+W TG+ + TYD+H +++ K+ + ATG +D +
Sbjct: 673 SSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFL 732
Query: 531 NLW 533
LW
Sbjct: 733 KLW 735
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 81/173 (46%), Gaps = 13/173 (7%)
Query: 326 HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINS 385
H AV FS+ Q + S +D T++V+ ++ E+ +++KA H ++
Sbjct: 621 HTDAVYHACFSQDGQR-IASCGADKTLQVFK----AETGEKLLDIKA------HEDEVLC 669
Query: 386 LAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASG--D 443
A + +DS + T S D+ +W V T+ H + F+ ++ A+G D
Sbjct: 670 CAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSND 729
Query: 444 KTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTG 496
+K+W ++ C T GHT+SV F + SC ADG ++LW VR+
Sbjct: 730 FFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSA 782
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 77/341 (22%), Positives = 128/341 (37%), Gaps = 30/341 (8%)
Query: 248 LGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDN 307
++ Q +A + +QV+ + + H + VLC CA SS I T S D
Sbjct: 630 FSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLC---CAFSSDDSYIATCSADK 686
Query: 308 SVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLV-SGSSDHTIKVWSFDGLSDDAEQ 366
V++WDS + V H V F+ K + L+ +GS+D +K+W +
Sbjct: 687 KVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN-------- 738
Query: 367 PMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIW 426
+ + + H +N +P+D L+ + S D T +W + + KR
Sbjct: 739 --QKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINV-KRFFL 795
Query: 427 SVEFSPVDQVVI------TASGDKTI-------KIWSI-SDGSCLKTFEGHTSSVLRASF 472
S E P D VI +A GDK I ++ I + G + GH S++ F
Sbjct: 796 SSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDF 855
Query: 473 LTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNL 532
V + V+LW + + +A H + + F T D + +
Sbjct: 856 SPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRV 915
Query: 533 WHDSTXXXXXXXXXXXXXXVLRGQELENAVLDADYTKAIQV 573
W V+ QE E VL D + +Q+
Sbjct: 916 WETKKVCKNSAIVLKQEIDVVF-QENETMVLAVDNIRGLQL 955
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/164 (21%), Positives = 69/164 (42%), Gaps = 2/164 (1%)
Query: 372 AKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFS 431
++ VV H + + + + + D+T V++ ++ + H+ + FS
Sbjct: 614 SRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFS 673
Query: 432 PVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIV--SCGADGLVK 489
D + T S DK +KIW + G + T++ H+ V F + ++ + D +K
Sbjct: 674 SDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLK 733
Query: 490 LWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 533
LW + EC T H + + E+ A+ +D + LW
Sbjct: 734 LWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLW 777
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%)
Query: 463 HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFA 522
HT +V A F G +I SCGAD ++++ TGE + HED++ A A
Sbjct: 621 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIA 680
Query: 523 TGGSDALVNLWHDST 537
T +D V +W +T
Sbjct: 681 TCSADKKVKIWDSAT 695
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 40/95 (42%), Gaps = 11/95 (11%)
Query: 8 ADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDL----LA 63
AD+ +W D H KGH G V F D LL +G D+ +R+W++ L
Sbjct: 1112 ADKTAKIWSFDLLSPLHELKGHNGCVRCSAF--SLDGILLATGDDNGEIRIWNVSDGQLL 1169
Query: 64 KKCVAT-----LDKHFSRVTSMAITSDGSTLISAG 93
C H VT + + D TL+SAG
Sbjct: 1170 HSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG 1204
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 47/102 (46%), Gaps = 3/102 (2%)
Query: 4 LLEGADRKVLVWDVD-GGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLL 62
++ A KVL++D+ G GH + F P +++ V +W++
Sbjct: 820 IIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVI--ALSQYCVELWNID 877
Query: 63 AKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLR 104
++ VA H S V + + DGS+ ++A D+ + +W+ +
Sbjct: 878 SRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETK 919
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 93.2 bits (230), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 74/299 (24%), Positives = 128/299 (42%), Gaps = 34/299 (11%)
Query: 255 LAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDS 314
+ A+ ++V+D + L GH++ V D SGK+L + S D +++LWD
Sbjct: 123 MVSASEDATIKVWDYETGDFERTLKGHTDSVQ--DISFDHSGKLL-ASCSADMTIKLWDF 179
Query: 315 ESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKA 374
+ C+ GH V +V+ + +VS S D TIK+W + + +K
Sbjct: 180 QGFECIRTMHGHDHNVSSVSIMPN-GDHIVSASRDKTIKMW-------EVQTGYCVK--- 228
Query: 375 VVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVD 434
H + + + + +L+ + S D+T VW + R H+ + + ++P
Sbjct: 229 TFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPES 288
Query: 435 Q--------------------VVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLT 474
+++ S DKTIK+W +S G CL T GH + V F +
Sbjct: 289 SYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS 348
Query: 475 RGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 533
G I+SC D +++W + C+ T + HE + +L K TG D V +W
Sbjct: 349 GGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 407
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 96/234 (41%), Gaps = 31/234 (13%)
Query: 324 TGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDI 383
+GH V V F + +VS S D TIKVW ++ + D E+ + H +
Sbjct: 105 SGHRSPVTRVIFHPVF-SVMVSASEDATIKVWDYE--TGDFERTLK--------GHTDSV 153
Query: 384 NSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGD 443
++ + L+ + S D T +W + T GH + SV P +++AS D
Sbjct: 154 QDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRD 213
Query: 444 KTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD 503
KTIK+W + G C+KTF GH V G I SC D V++W V T EC A
Sbjct: 214 KTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELR 273
Query: 504 KHEDKI----WAL----------------AVGKKTEMFATGGSDALVNLWHDST 537
+H + WA GK +G D + +W ST
Sbjct: 274 EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST 327
Score = 87.4 bits (215), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 85/344 (24%), Positives = 143/344 (41%), Gaps = 58/344 (16%)
Query: 28 GHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGS 87
GH+ V+ ++FHP S++ S S+DAT++VWD TL H V ++ G
Sbjct: 106 GHRSPVTRVIFHPVF--SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK 163
Query: 88 TLISAGRDKVVNLWDLRDYSCKLTVPTYEM-VEAVCAIPPGSAFDSFLSSYNQQTIKKKR 146
L S D + LWD + + C T+ ++ V +V +P G D +S+ +TIK
Sbjct: 164 LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNG---DHIVSASRDKTIKMWE 220
Query: 147 RSLEIHFIT-VGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGL 205
T G R VRM V P+ G
Sbjct: 221 VQTGYCVKTFTGHREWVRM---------------------------------VRPNQDGT 247
Query: 206 LCVT-ADQQLLLYTTVEVPEKKMELILSKRLV---GYNEEI----------LDLKFLGEE 251
L + ++ Q + V E K EL + +V + E + K G+
Sbjct: 248 LIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKP 307
Query: 252 EQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRL 311
+L + + ++++D+S+ C L GH V + SG I++ + D ++R+
Sbjct: 308 GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGV---LFHSGGKFILSCADDKTLRV 364
Query: 312 WDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVW 355
WD +++ C+ H V ++ F K ++V+GS D T+KVW
Sbjct: 365 WDYKNKRCMKTLNAHEHFVTSLDFHKTAP-YVVTGSVDQTVKVW 407
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/284 (21%), Positives = 119/284 (41%), Gaps = 35/284 (12%)
Query: 231 LSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDT 290
+ L G+ + + D+ F + LA + ++++D C + GH V +
Sbjct: 142 FERTLKGHTDSVQDISF-DHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNV---SS 197
Query: 291 CALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDH 350
++ IV+ S+D ++++W+ ++ CV TGH V V ++ + S S+D
Sbjct: 198 VSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQD-GTLIASCSNDQ 256
Query: 351 TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDS----------------- 393
T++VW + KA + H + ++ AP S
Sbjct: 257 TVRVWVV----------ATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGK 306
Query: 394 ---LVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWS 450
+ +GS+D+T +W + + ++T GH + V F + +++ + DKT+++W
Sbjct: 307 PGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWD 366
Query: 451 ISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVR 494
+ C+KT H V F +V+ D VK+W R
Sbjct: 367 YKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 67/272 (24%), Positives = 117/272 (43%), Gaps = 45/272 (16%)
Query: 276 YVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAF 335
Y L+GH V + + S ++V+ S+D ++++WD E+ GH +V ++F
Sbjct: 102 YALSGHRSPVTRVIFHPVFS---VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISF 158
Query: 336 SKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDIN--SLAVAPNDS 393
L S S+D TIK+W F G + + HG D N S+++ PN
Sbjct: 159 DHS-GKLLASCSADMTIKLWDFQGF------------ECIRTMHGHDHNVSSVSIMPNGD 205
Query: 394 LVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISD 453
+ + S+D+T +W + V TF GH+ + V + ++ + S D+T+++W ++
Sbjct: 206 HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVAT 265
Query: 454 GSCLKTFEGHTSSVLRASFLTR--------------------GAQIVSCGADGLVKLWTV 493
C H V S+ G ++S D +K+W V
Sbjct: 266 KECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDV 325
Query: 494 RTGECIATYDKHEDKIWALAVGKKTEMFATGG 525
TG C+ T H++ W V +F +GG
Sbjct: 326 STGMCLMTLVGHDN--WVRGV-----LFHSGG 350
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 75/161 (46%)
Query: 373 KAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSP 432
K ++ H + + P S++ + S+D T VW T +GH + + F
Sbjct: 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH 160
Query: 433 VDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWT 492
+++ + S D TIK+W C++T GH +V S + G IVS D +K+W
Sbjct: 161 SGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWE 220
Query: 493 VRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 533
V+TG C+ T+ H + + + + + A+ +D V +W
Sbjct: 221 VQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW 261
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 82/325 (25%), Positives = 137/325 (42%), Gaps = 47/325 (14%)
Query: 1 MFALLEGA--DRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRV 58
+F+++ A D + VWD + G KGH V I F D LL S S D T+++
Sbjct: 119 VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISF--DHSGKLLASCSADMTIKL 176
Query: 59 WDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMV 118
WD +C+ T+ H V+S++I +G ++SA RDK + +W+++ C T +
Sbjct: 177 WDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHR-- 234
Query: 119 EAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMW-NADSAC---LYE 174
E V + P S N QT VR+W A C L E
Sbjct: 235 EWVRMVRPNQDGTLIASCSNDQT--------------------VRVWVVATKECKAELRE 274
Query: 175 QKSSDVTISFEMDDSKRGFTAATVLPSNQG------LLCVTADQQLLLYTTVEVPEKKME 228
+ IS+ + S + AT + + LL + D+ + ++ M
Sbjct: 275 HRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDV----STGMC 330
Query: 229 LILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCL 288
L+ LVG++ + + F + L+ A + + ++V+D + C L H V L
Sbjct: 331 LMT---LVGHDNWVRGVLFHSGGKFILSCADD-KTLRVWDYKNKRCMKTLNAHEHFVTSL 386
Query: 289 DTCALSSGKILIVTGSKDNSVRLWD 313
D +VTGS D +V++W+
Sbjct: 387 D---FHKTAPYVVTGSVDQTVKVWE 408
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 52/103 (50%), Gaps = 2/103 (1%)
Query: 2 FALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDL 61
F L D+ + +WDV G C GH V +LFH + + S +DD T+RVWD
Sbjct: 310 FLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFH--SGGKFILSCADDKTLRVWDY 367
Query: 62 LAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLR 104
K+C+ TL+ H VTS+ +++ D+ V +W+ R
Sbjct: 368 KNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 122/559 (21%), Positives = 218/559 (38%), Gaps = 112/559 (20%)
Query: 7 GADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKC 66
GAD+ + V+ + G K H+ V F TD + + S D V++W+ + +
Sbjct: 640 GADKTLQVFKAETGEKLLEIKAHEDEVLCCAF--STDDRFIATCSVDKKVKIWNSMTGEL 697
Query: 67 VATLDKHFSRVTSMAITSDGSTLISA--GRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAI 124
V T D+H +V T+ L+ A D + LWDL C+ T+ + C
Sbjct: 698 VHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRF 757
Query: 125 PPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISF 184
P D L+S G +++W+A SA E+KS +V
Sbjct: 758 SPD---DKLLAS-------------------CSADGTLKLWDATSA--NERKSINV---- 789
Query: 185 EMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILD 244
+Q L +E P++ ME+I+
Sbjct: 790 ---------------------------KQFFL--NLEDPQEDMEVIVKC----------- 809
Query: 245 LKFLGEEEQYLAVATNIEQVQVYDL-SSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTG 303
+ + + + A N ++ ++D+ +S + GH + C S L V
Sbjct: 810 CSWSADGARIMVAAKN--KIFLFDIHTSGLLGEIHTGHHSTI---QYCDFSPQNHLAVVA 864
Query: 304 SKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDD 363
V LW+++SR V GH+ V V FS +FL S S D TI++W + +
Sbjct: 865 LSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTS-SDDQTIRLWETKKVCKN 923
Query: 364 AEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVC----TGSQD-----RTACVWRLP---- 410
+ + LK + V ++ LAV L TG D + +C P
Sbjct: 924 S--AVMLKQEVDVVFQENEVMVLAVDHIRRLQLINGRTGQIDYLTEAQVSCCCLSPHLQY 981
Query: 411 -------------DLVSVVTFRG---HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG 454
+LV+ F+ HK+ +W ++F+ ++ +I++S D I++W+
Sbjct: 982 IAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLD 1041
Query: 455 SCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAV 514
C+ GH +V + L + ++++S DG VK+W + TG + H+ + + +
Sbjct: 1042 KCI-FLRGHQETV-KDFRLLKNSRLLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDI 1099
Query: 515 GKKTEMFATGGSDALVNLW 533
F++ +D +W
Sbjct: 1100 SHDATKFSSTSADKTAKIW 1118
Score = 85.9 bits (211), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 125/568 (22%), Positives = 217/568 (38%), Gaps = 106/568 (18%)
Query: 9 DRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVA 68
D+KV +W+ G H + H V+ F + LL +GS D +++WDL K+C
Sbjct: 684 DKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRN 743
Query: 69 TLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWD-----------LRDYSCKLTVPTYEM 117
T+ H + V + D L S D + LWD ++ + L P +M
Sbjct: 744 TMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLNLEDPQEDM 803
Query: 118 --VEAVCAIPPGSA------------FDSFLSSY-------NQQTIKKKRRSLEIHFITV 156
+ C+ A FD S + TI+ S + H V
Sbjct: 804 EVIVKCCSWSADGARIMVAAKNKIFLFDIHTSGLLGEIHTGHHSTIQYCDFSPQNHLAVV 863
Query: 157 G-ERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTA----ATVLPSNQGLLCVTAD 211
+ V +WN DS K +D RG + P L + D
Sbjct: 864 ALSQYCVELWNTDS----RSKVADC----------RGHLSWVHGVMFSPDGSSFLTSSDD 909
Query: 212 QQLLLYTTVEVPEK-----KME----------LILS----KRLVGYNEEILDLKFLGEEE 252
Q + L+ T +V + K E ++L+ +RL N + +L E +
Sbjct: 910 QTIRLWETKKVCKNSAVMLKQEVDVVFQENEVMVLAVDHIRRLQLINGRTGQIDYLTEAQ 969
Query: 253 ----------QYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVT 302
QY+A +++ +L + H + V + ++ + +++
Sbjct: 970 VSCCCLSPHLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQ---FTADEKTLIS 1026
Query: 303 GSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSD 362
S D +++W+ + C+ + GH V K + L+S S D T+KVW+ ++
Sbjct: 1027 SSDDAEIQVWNWQLDKCIFL-RGHQETVKDFRLLKNSR--LLSWSFDGTVKVWNI--ITG 1081
Query: 363 DAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHK 422
+ E+ H + S ++ + + + S D+TA +W L+ + RGH
Sbjct: 1082 NKEKDF--------VCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHN 1133
Query: 423 RGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLK-----TFEG---HTSSVLRASFLT 474
+ FS ++ T + I+IW++S+G L + EG H V F
Sbjct: 1134 GCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFSP 1193
Query: 475 RGAQIVSCGADGLVKLWTVRTGECIATY 502
G ++S G G +K W V TGE T+
Sbjct: 1194 DGKMLISAG--GYIKWWNVVTGESSQTF 1219
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 2/123 (1%)
Query: 413 VSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASF 472
+S + R H ++ FS Q + + DKT++++ G L + H VL +F
Sbjct: 612 LSRLVVRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAF 671
Query: 473 LTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTE--MFATGGSDALV 530
T I +C D VK+W TGE + TYD+H +++ + + ATG SD +
Sbjct: 672 STDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFL 731
Query: 531 NLW 533
LW
Sbjct: 732 KLW 734
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 76/168 (45%), Gaps = 13/168 (7%)
Query: 326 HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINS 385
H AV FS+ Q + S +D T++V+ ++ E+ + +KA H ++
Sbjct: 620 HTDAVYHACFSEDGQR-IASCGADKTLQVFK----AETGEKLLEIKA------HEDEVLC 668
Query: 386 LAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASG--D 443
A + +D + T S D+ +W V T+ H + F+ ++ A+G D
Sbjct: 669 CAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSD 728
Query: 444 KTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLW 491
+K+W ++ C T GHT+SV F + SC ADG +KLW
Sbjct: 729 CFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLW 776
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/164 (20%), Positives = 70/164 (42%), Gaps = 2/164 (1%)
Query: 372 AKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFS 431
++ VV H + + + + + D+T V++ ++ + H+ + FS
Sbjct: 613 SRLVVRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFS 672
Query: 432 PVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIV--SCGADGLVK 489
D+ + T S DK +KIW+ G + T++ H+ V F ++ + +D +K
Sbjct: 673 TDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLK 732
Query: 490 LWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 533
LW + EC T H + + ++ A+ +D + LW
Sbjct: 733 LWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLW 776
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 36/75 (48%)
Query: 463 HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFA 522
HT +V A F G +I SCGAD ++++ TGE + HED++ A A
Sbjct: 620 HTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIA 679
Query: 523 TGGSDALVNLWHDST 537
T D V +W+ T
Sbjct: 680 TCSVDKKVKIWNSMT 694
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 16/97 (16%)
Query: 8 ADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDL------ 61
AD+ +W D H +GH G V F D +LL +G D+ +R+W++
Sbjct: 1111 ADKTAKIWSFDLLLPLHELRGHNGCVRCSAF--SVDSTLLATGDDNGEIRIWNVSNGELL 1168
Query: 62 -----LAKKCVATLDKHFSRVTSMAITSDGSTLISAG 93
L+++ AT H VT + + DG LISAG
Sbjct: 1169 HLCAPLSEEGAAT---HGGWVTDLCFSPDGKMLISAG 1202
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 22/102 (21%), Positives = 43/102 (42%), Gaps = 3/102 (2%)
Query: 4 LLEGADRKVLVWDVD-GGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLL 62
++ A K+ ++D+ G GH + F P L V +W+
Sbjct: 819 IMVAAKNKIFLFDIHTSGLLGEIHTGHHSTIQYCDFSPQN--HLAVVALSQYCVELWNTD 876
Query: 63 AKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLR 104
++ VA H S V + + DGS+ +++ D+ + LW+ +
Sbjct: 877 SRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETK 918
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 86.7 bits (213), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 120/271 (44%), Gaps = 43/271 (15%)
Query: 291 CALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDH 350
C GK L TG++D +R+WD E+R V + GH + ++ + + LVSGS D
Sbjct: 130 CFSPDGKFL-ATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPS-GDKLVSGSGDR 187
Query: 351 TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDS-LVCTGSQDRTACVW-- 407
T+++W + ++ + + ++AV+P D + GS DR VW
Sbjct: 188 TVRIWD-----------LRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDS 236
Query: 408 -------RLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISD------- 453
RL T GHK ++SV F+ Q V++ S D+++K+W++ +
Sbjct: 237 ETGFLVERLDSENESGT--GHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDS 294
Query: 454 -----GSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDK 508
G+C T+ GH VL + I+S D V W ++G + H +
Sbjct: 295 KTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNS 354
Query: 509 IWALAV------GKKTEMFATGGSDALVNLW 533
+ ++AV G + +FATG D +W
Sbjct: 355 VISVAVANGSSLGPEYNVFATGSGDCKARIW 385
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 72/267 (26%), Positives = 124/267 (46%), Gaps = 33/267 (12%)
Query: 206 LCVTADQQLL-------LYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVA 258
+C + D + L L ++ +K+ +IL G+ ++I L + ++ L
Sbjct: 129 VCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQ----GHEQDIYSLDYFPSGDK-LVSG 183
Query: 259 TNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGK-ILIVTGSKDNSVRLWDSESR 317
+ V+++DL + CS L+ I + T A+S G I GS D +VR+WDSE+
Sbjct: 184 SGDRTVRIWDLRTGQCSLTLS----IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETG 239
Query: 318 CCVG-------VGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSD--DAEQPM 368
V GTGH +V +V F++ Q+ +VSGS D ++K+W+ ++ D++ P
Sbjct: 240 FLVERLDSENESGTGHKDSVYSVVFTRDGQS-VVSGSLDRSVKLWNLQNANNKSDSKTPN 298
Query: 369 NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSV 428
+ + H + S+A ND + +GS+DR W ++ +GH+ + SV
Sbjct: 299 SGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISV 358
Query: 429 ------EFSPVDQVVITASGDKTIKIW 449
P V T SGD +IW
Sbjct: 359 AVANGSSLGPEYNVFATGSGDCKARIW 385
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/224 (25%), Positives = 102/224 (45%), Gaps = 17/224 (7%)
Query: 326 HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDG-----LSDDA---EQPMNLKAKAVVA 377
H V V FS + +L +G + T DG LSDD+ + P NL + +
Sbjct: 63 HTSVVCCVKFSNDGE-YLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPS 121
Query: 378 AHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVV 437
+ I S+ +P+ + TG++DR +W + + V+ +GH++ I+S+++ P +
Sbjct: 122 SDLY-IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKL 180
Query: 438 ITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE 497
++ SGD+T++IW + G C T A G I + D V++W TG
Sbjct: 181 VSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF 240
Query: 498 CIATYDK-------HEDKIWALAVGKKTEMFATGGSDALVNLWH 534
+ D H+D ++++ + + +G D V LW+
Sbjct: 241 LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWN 284
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 74/332 (22%), Positives = 127/332 (38%), Gaps = 77/332 (23%)
Query: 33 VSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISA 92
+ S+ F PD L +G++D +R+WD+ +K V L H + S+ G L+S
Sbjct: 126 IRSVCFSPD--GKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSG 183
Query: 93 GRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIH 152
D+ V +WDLR C LT+ + V V A+ PG
Sbjct: 184 SGDRTVRIWDLRTGQCSLTLSIEDGVTTV-AVSPGDG----------------------K 220
Query: 153 FITVG--ERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTA 210
+I G +R VR+W++++ L E+ S+ DS + Q ++ +
Sbjct: 221 YIAAGSLDRA-VRVWDSETGFLVERLDSENESGTGHKDS---VYSVVFTRDGQSVVSGSL 276
Query: 211 DQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLS 270
D+ + L+ L A N + +
Sbjct: 277 DRSVKLWN------------------------------------LQNANNKSDSKTPNSG 300
Query: 271 SMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAV 330
+ +Y+ GH + VL + A + I++GSKD V WD +S + + GH +V
Sbjct: 301 TCEVTYI--GHKDFVL---SVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSV 355
Query: 331 GAVAFSKKLQ-----NFLVSGSSDHTIKVWSF 357
+VA + N +GS D ++W +
Sbjct: 356 ISVAVANGSSLGPEYNVFATGSGDCKARIWKY 387
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 55/101 (54%), Gaps = 5/101 (4%)
Query: 4 LLEGA-DRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLL 62
L GA DR + +WD++ +GH+ + S+ + P DK L SGS D TVR+WDL
Sbjct: 138 LATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDK--LVSGSGDRTVRIWDLR 195
Query: 63 AKKCVATLDKHFSRVTSMAITSDGSTLISAGR-DKVVNLWD 102
+C TL VT++A++ I+AG D+ V +WD
Sbjct: 196 TGQCSLTLSIE-DGVTTVAVSPGDGKYIAAGSLDRAVRVWD 235
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 50/115 (43%), Gaps = 21/115 (18%)
Query: 9 DRKVLVWDVDGGFCTHYFK-------GHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDL 61
DR V VWD + GF GHK V S++F D + SGS D +V++W+L
Sbjct: 228 DRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFT--RDGQSVVSGSLDRSVKLWNL 285
Query: 62 L------------AKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLR 104
+ C T H V S+A T + ++S +D+ V WD +
Sbjct: 286 QNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKK 340
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 85.5 bits (210), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 103/221 (46%), Gaps = 14/221 (6%)
Query: 297 KILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS 356
K I+ GS D +R+++ + V H + ++A + +++SGS D T+K+W+
Sbjct: 67 KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPT-KPYVLSGSDDLTVKLWN 125
Query: 357 FDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND-SLVCTGSQDRTACVWRLPDLVSV 415
++ N + H + +A P D S +G DRT VW L
Sbjct: 126 WEN---------NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN 176
Query: 416 VTFR-GHKRGIWSVEFSPVDQ--VVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASF 472
T G +RG+ V++ P+ +ITAS D TIKIW SC+ T EGH S+V A F
Sbjct: 177 FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF 236
Query: 473 LTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALA 513
I+S DG +K+W T + T + ++ W +A
Sbjct: 237 HPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIA 277
Score = 72.8 bits (177), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 109/237 (45%), Gaps = 22/237 (9%)
Query: 309 VRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPM 368
V +W+ E++ V V A F + +N+++ GS D I+V+++
Sbjct: 37 VEIWNYETQVEVRSIQVTETPVRAGKFIAR-KNWIIVGSDDFRIRVFNY----------- 84
Query: 369 NLKAKAV-VAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSV-VTFRGHKRGIW 426
N K V AH I S+AV P V +GS D T +W + ++ TF GH+ +
Sbjct: 85 NTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVM 144
Query: 427 SVEFSPVDQVVITASG--DKTIKIWSISDGS---CLKTFEGHTSSVLRASFLTRGAQIVS 481
V F+P D ASG D+T+K+WS+ + L T + + + L +++
Sbjct: 145 CVAFNPKDPSTF-ASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMIT 203
Query: 482 CGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKT-EMFATGGSDALVNLWHDST 537
D +K+W +T C+AT + H + + AV T + +G D + +W+ ST
Sbjct: 204 ASDDLTIKIWDYQTKSCVATLEGHMSNV-SFAVFHPTLPIIISGSEDGTLKIWNSST 259
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 62/270 (22%), Positives = 113/270 (41%), Gaps = 17/270 (6%)
Query: 246 KFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSK 305
KF+ + ++ V ++ +++V++ ++ H + + + A+ K +++GS
Sbjct: 62 KFIARK-NWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSI---AVHPTKPYVLSGSD 117
Query: 306 DNSVRLWDSESRCCV-GVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDA 364
D +V+LW+ E+ + GH V VAF+ K + SG D T+KVWS
Sbjct: 118 DLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL------G 171
Query: 365 EQPMNLKAKAVVAAHGKDINSLAVA--PNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHK 422
+ N + + +N + P+ + T S D T +W V T GH
Sbjct: 172 QSTPNF---TLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHM 228
Query: 423 RGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFE-GHTSSVLRASFLTRGAQIVS 481
+ F P ++I+ S D T+KIW+ S KT G S A+ T ++
Sbjct: 229 SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIA 288
Query: 482 CGADGLVKLWTVRTGECIATYDKHEDKIWA 511
G D + ++ E + D +W+
Sbjct: 289 SGFDNGFTVLSLGNDEPTLSLDPVGKLVWS 318
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 53/107 (49%), Gaps = 5/107 (4%)
Query: 9 DRKVLVWDVDGGFCTHYFK---GHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK 65
DR V VW + G T F G + V+ + ++P DK + + SDD T+++WD K
Sbjct: 162 DRTVKVWSL--GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS 219
Query: 66 CVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTV 112
CVATL+ H S V+ +IS D + +W+ Y + T+
Sbjct: 220 CVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL 266
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 81/201 (40%), Gaps = 36/201 (17%)
Query: 239 NEEILDLKFLGEEEQYLAVATNIEQ------------VQVYDLSSMSCSYVLA-GHSEIV 285
N L+ F G E + VA N + V+V+ L + ++ L G V
Sbjct: 128 NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGV 187
Query: 286 LCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVS 345
+D L K ++T S D ++++WD +++ CV GHM V F L ++S
Sbjct: 188 NYVDYYPLPD-KPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP-IIIS 245
Query: 346 GSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAH---------------------GKDIN 384
GS D T+K+W+ + + L+ +A H G D
Sbjct: 246 GSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEP 305
Query: 385 SLAVAPNDSLVCTGSQDRTAC 405
+L++ P LV +G ++ A
Sbjct: 306 TLSLDPVGKLVWSGGKNAAAS 326
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 52/118 (44%)
Query: 417 TFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRG 476
TF + ++F P + V+T ++IW+ +++ + + V F+ R
Sbjct: 8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARK 67
Query: 477 AQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 534
I+ D ++++ TGE + ++ H D I ++AV +G D V LW+
Sbjct: 68 NWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 3/89 (3%)
Query: 9 DRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVA 68
D + +WD C +GH VS +FHP ++ SGS+D T+++W+ K
Sbjct: 207 DLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTL--PIIISGSEDGTLKIWNSSTYKVEK 264
Query: 69 TLDKHFSRVTSMAITSDG-STLISAGRDK 96
TL+ R +A G I++G D
Sbjct: 265 TLNVGLERSWCIATHPTGRKNYIASGFDN 293
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 64/154 (41%), Gaps = 12/154 (7%)
Query: 4 LLEGADR-KVLVWDVDGGFC-THYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDL 61
+L G+D V +W+ + + F+GH+ V + F+P D S SG D TV+VW L
Sbjct: 112 VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNP-KDPSTFASGCLDRTVKVWSL 170
Query: 62 LAKKCVATLDKHFSRVTSMA---ITSDGSTLISAGRDKVVNLWDLRDYSCKLTVP----- 113
TL R + D +I+A D + +WD + SC T+
Sbjct: 171 GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSN 230
Query: 114 -TYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKR 146
++ + I + D L +N T K ++
Sbjct: 231 VSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEK 264
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/168 (20%), Positives = 64/168 (38%), Gaps = 2/168 (1%)
Query: 368 MNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWS 427
M L K + + + P + V T +W V V + + + + +
Sbjct: 1 MKLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRA 60
Query: 428 VEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGL 487
+F +I S D I++++ + G + FE H + + ++S D
Sbjct: 61 GKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLT 120
Query: 488 VKLWTVRTGECI-ATYDKHEDKIWALAVGKK-TEMFATGGSDALVNLW 533
VKLW + T++ HE + +A K FA+G D V +W
Sbjct: 121 VKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW 168
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 44 KSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDL 103
K+ + GSDD +RV++ + V + H + S+A+ ++S D V LW+
Sbjct: 67 KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW 126
Query: 104 -RDYSCKLTVPTYEMVEAVCAIPP 126
+++ + T +E A P
Sbjct: 127 ENNWALEQTFEGHEHFVMCVAFNP 150
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 103/221 (46%), Gaps = 14/221 (6%)
Query: 297 KILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS 356
K I+ GS D +R+++ + V H + ++A + +++SGS D T+K+W+
Sbjct: 67 KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAV-HPTKPYVLSGSDDLTVKLWN 125
Query: 357 FDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND-SLVCTGSQDRTACVWRLPDLVSV 415
++ N + H + +A P D S +G DRT VW L
Sbjct: 126 WEN---------NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN 176
Query: 416 VTFR-GHKRGIWSVEFSPVD--QVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASF 472
T G +RG+ V++ P+ +ITAS D TIKIW SC+ T EGH S+V A F
Sbjct: 177 FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF 236
Query: 473 LTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALA 513
I+S DG +K+W T + T + ++ W +A
Sbjct: 237 HPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIA 277
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 65/237 (27%), Positives = 109/237 (45%), Gaps = 22/237 (9%)
Query: 309 VRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPM 368
V LW+ E++ V V A F + +N+++ GS D I+V+++
Sbjct: 37 VELWNYETQVEVRSIQVTETPVRAGKFIAR-KNWIIVGSDDFRIRVFNY----------- 84
Query: 369 NLKAKAV-VAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSV-VTFRGHKRGIW 426
N K V AH I S+AV P V +GS D T +W + ++ TF GH+ +
Sbjct: 85 NTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVM 144
Query: 427 SVEFSPVDQVVITASG--DKTIKIWSISDGS---CLKTFEGHTSSVLRASFLTRGAQIVS 481
V F+P D ASG D+T+K+WS+ + L T + + + L +++
Sbjct: 145 CVAFNPKDPSTF-ASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMIT 203
Query: 482 CGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKT-EMFATGGSDALVNLWHDST 537
D +K+W +T C+AT + H + + AV T + +G D + +W+ ST
Sbjct: 204 ASDDLTIKIWDYQTKSCVATLEGHMSNV-SFAVFHPTLPIIISGSEDGTLKIWNSST 259
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 53/107 (49%), Gaps = 5/107 (4%)
Query: 9 DRKVLVWDVDGGFCTHYFK---GHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK 65
DR V VW + G T F G + V+ + ++P DK + + SDD T+++WD K
Sbjct: 162 DRTVKVWSL--GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS 219
Query: 66 CVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTV 112
CVATL+ H S V+ +IS D + +W+ Y + T+
Sbjct: 220 CVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL 266
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 67/154 (43%), Gaps = 15/154 (9%)
Query: 239 NEEILDLKFLGEEEQYLAVATNIEQ------------VQVYDLSSMSCSYVLA-GHSEIV 285
N L+ F G E + VA N + V+V+ L + ++ L G V
Sbjct: 128 NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGV 187
Query: 286 LCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVS 345
+D L K ++T S D ++++WD +++ CV GHM V F L ++S
Sbjct: 188 NYVDYYPLPD-KPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP-IIIS 245
Query: 346 GSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAH 379
GS D T+K+W+ + + L+ +A H
Sbjct: 246 GSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATH 279
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/118 (21%), Positives = 52/118 (44%)
Query: 417 TFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRG 476
TF + ++F P + V+T +++W+ +++ + + V F+ R
Sbjct: 8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARK 67
Query: 477 AQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 534
I+ D ++++ TGE + ++ H D I ++AV +G D V LW+
Sbjct: 68 NWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 3/96 (3%)
Query: 2 FALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDL 61
+ + D + +WD C +GH VS +FHP ++ SGS+D T+++W+
Sbjct: 200 YMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTL--PIIISGSEDGTLKIWNS 257
Query: 62 LAKKCVATLDKHFSRVTSMAITSDG-STLISAGRDK 96
K TL+ R +A G I++G D
Sbjct: 258 STYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDN 293
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 50/114 (43%), Gaps = 6/114 (5%)
Query: 4 LLEGADR-KVLVWDVDGGFC-THYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDL 61
+L G+D V +W+ + + F+GH+ V + F+P D S SG D TV+VW L
Sbjct: 112 VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPK-DPSTFASGCLDRTVKVWSL 170
Query: 62 LAKKCVATLDKHFSR---VTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTV 112
TL R D +I+A D + +WD + SC T+
Sbjct: 171 GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL 224
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/168 (20%), Positives = 64/168 (38%), Gaps = 2/168 (1%)
Query: 368 MNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWS 427
M L K + + + P + V T +W V V + + + + +
Sbjct: 1 MKLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRA 60
Query: 428 VEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGL 487
+F +I S D I++++ + G + FE H + + ++S D
Sbjct: 61 GKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLT 120
Query: 488 VKLWTVRTGECI-ATYDKHEDKIWALAVGKK-TEMFATGGSDALVNLW 533
VKLW + T++ HE + +A K FA+G D V +W
Sbjct: 121 VKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW 168
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 2/101 (1%)
Query: 44 KSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDL 103
K+ + GSDD +RV++ + V + H + S+A+ ++S D V LW+
Sbjct: 67 KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW 126
Query: 104 -RDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIK 143
+++ + T +E A P +F S +T+K
Sbjct: 127 ENNWALEQTFEGHEHFVMCVAFNPKDP-STFASGCLDRTVK 166
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 103/221 (46%), Gaps = 14/221 (6%)
Query: 297 KILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS 356
K I+ GS D +R+++ + V H + ++A + +++SGS D T+K+W+
Sbjct: 67 KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAV-HPTKPYVLSGSDDLTVKLWN 125
Query: 357 FDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND-SLVCTGSQDRTACVWRLPDLVSV 415
++ N + H + +A P D S +G DRT VW L
Sbjct: 126 WEN---------NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN 176
Query: 416 VTFR-GHKRGIWSVEFSPVD--QVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASF 472
T G +RG+ V++ P+ +ITAS D TIKIW SC+ T EGH S+V A F
Sbjct: 177 FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF 236
Query: 473 LTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALA 513
I+S DG +K+W T + T + ++ W +A
Sbjct: 237 HPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIA 277
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 65/237 (27%), Positives = 109/237 (45%), Gaps = 22/237 (9%)
Query: 309 VRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPM 368
V LW+ E++ V V A F + +N+++ GS D I+V+++
Sbjct: 37 VELWNYETQVEVRSIQVTETPVRAGKFIAR-KNWIIVGSDDFRIRVFNY----------- 84
Query: 369 NLKAKAV-VAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSV-VTFRGHKRGIW 426
N K V AH I S+AV P V +GS D T +W + ++ TF GH+ +
Sbjct: 85 NTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVM 144
Query: 427 SVEFSPVDQVVITASG--DKTIKIWSISDGS---CLKTFEGHTSSVLRASFLTRGAQIVS 481
V F+P D ASG D+T+K+WS+ + L T + + + L +++
Sbjct: 145 CVAFNPKDPSTF-ASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMIT 203
Query: 482 CGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKT-EMFATGGSDALVNLWHDST 537
D +K+W +T C+AT + H + + AV T + +G D + +W+ ST
Sbjct: 204 ASDDLTIKIWDYQTKSCVATLEGHMSNV-SFAVFHPTLPIIISGSEDGTLKIWNSST 259
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 53/107 (49%), Gaps = 5/107 (4%)
Query: 9 DRKVLVWDVDGGFCTHYFK---GHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK 65
DR V VW + G T F G + V+ + ++P DK + + SDD T+++WD K
Sbjct: 162 DRTVKVWSL--GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS 219
Query: 66 CVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTV 112
CVATL+ H S V+ +IS D + +W+ Y + T+
Sbjct: 220 CVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL 266
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 67/154 (43%), Gaps = 15/154 (9%)
Query: 239 NEEILDLKFLGEEEQYLAVATNIEQ------------VQVYDLSSMSCSYVLA-GHSEIV 285
N L+ F G E + VA N + V+V+ L + ++ L G V
Sbjct: 128 NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGV 187
Query: 286 LCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVS 345
+D L K ++T S D ++++WD +++ CV GHM V F L ++S
Sbjct: 188 NYVDYYPLPD-KPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP-IIIS 245
Query: 346 GSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAH 379
GS D T+K+W+ + + L+ +A H
Sbjct: 246 GSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATH 279
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/118 (21%), Positives = 52/118 (44%)
Query: 417 TFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRG 476
TF + ++F P + V+T +++W+ +++ + + V F+ R
Sbjct: 8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARK 67
Query: 477 AQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 534
I+ D ++++ TGE + ++ H D I ++AV +G D V LW+
Sbjct: 68 NWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 3/96 (3%)
Query: 2 FALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDL 61
+ + D + +WD C +GH VS +FHP ++ SGS+D T+++W+
Sbjct: 200 YMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTL--PIIISGSEDGTLKIWNS 257
Query: 62 LAKKCVATLDKHFSRVTSMAITSDG-STLISAGRDK 96
K TL+ R +A G I++G D
Sbjct: 258 STYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDN 293
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 50/114 (43%), Gaps = 6/114 (5%)
Query: 4 LLEGADR-KVLVWDVDGGFC-THYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDL 61
+L G+D V +W+ + + F+GH+ V + F+P D S SG D TV+VW L
Sbjct: 112 VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPK-DPSTFASGCLDRTVKVWSL 170
Query: 62 LAKKCVATLDKHFSR---VTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTV 112
TL R D +I+A D + +WD + SC T+
Sbjct: 171 GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL 224
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/168 (20%), Positives = 64/168 (38%), Gaps = 2/168 (1%)
Query: 368 MNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWS 427
M L K + + + P + V T +W V V + + + + +
Sbjct: 1 MKLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRA 60
Query: 428 VEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGL 487
+F +I S D I++++ + G + FE H + + ++S D
Sbjct: 61 GKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLT 120
Query: 488 VKLWTVRTGECI-ATYDKHEDKIWALAVGKK-TEMFATGGSDALVNLW 533
VKLW + T++ HE + +A K FA+G D V +W
Sbjct: 121 VKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW 168
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 2/101 (1%)
Query: 44 KSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDL 103
K+ + GSDD +RV++ + V + H + S+A+ ++S D V LW+
Sbjct: 67 KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW 126
Query: 104 -RDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIK 143
+++ + T +E A P +F S +T+K
Sbjct: 127 ENNWALEQTFEGHEHFVMCVAFNPKDP-STFASGCLDRTVK 166
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 103/221 (46%), Gaps = 14/221 (6%)
Query: 297 KILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS 356
K I+ GS D +R+++ + V H + ++A + +++SGS D T+K+W+
Sbjct: 67 KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAV-HPTKPYVLSGSDDLTVKLWN 125
Query: 357 FDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND-SLVCTGSQDRTACVWRLPDLVSV 415
++ N + H + +A P D S +G DRT VW L
Sbjct: 126 WEN---------NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN 176
Query: 416 VTFR-GHKRGIWSVEFSPVDQ--VVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASF 472
T G +RG+ V++ P+ +ITAS D TIKIW SC+ T EGH S+V A F
Sbjct: 177 FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF 236
Query: 473 LTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALA 513
I+S DG +K+W T + T + ++ W +A
Sbjct: 237 HPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIA 277
Score = 72.8 bits (177), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 65/237 (27%), Positives = 109/237 (45%), Gaps = 22/237 (9%)
Query: 309 VRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPM 368
V LW+ E++ V V A F + +N+++ GS D I+V+++
Sbjct: 37 VELWNYETQVEVRSIQVTETPVRAGKFIAR-KNWIIVGSDDFRIRVFNY----------- 84
Query: 369 NLKAKAV-VAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSV-VTFRGHKRGIW 426
N K V AH I S+AV P V +GS D T +W + ++ TF GH+ +
Sbjct: 85 NTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVM 144
Query: 427 SVEFSPVDQVVITASG--DKTIKIWSISDGS---CLKTFEGHTSSVLRASFLTRGAQIVS 481
V F+P D ASG D+T+K+WS+ + L T + + + L +++
Sbjct: 145 CVAFNPKDPSTF-ASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMIT 203
Query: 482 CGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKT-EMFATGGSDALVNLWHDST 537
D +K+W +T C+AT + H + + AV T + +G D + +W+ ST
Sbjct: 204 ASDDLTIKIWDYQTKSCVATLEGHMSNV-SFAVFHPTLPIIISGSEDGTLKIWNSST 259
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 53/107 (49%), Gaps = 5/107 (4%)
Query: 9 DRKVLVWDVDGGFCTHYFK---GHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK 65
DR V VW + G T F G + V+ + ++P DK + + SDD T+++WD K
Sbjct: 162 DRTVKVWSL--GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS 219
Query: 66 CVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTV 112
CVATL+ H S V+ +IS D + +W+ Y + T+
Sbjct: 220 CVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL 266
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 81/201 (40%), Gaps = 36/201 (17%)
Query: 239 NEEILDLKFLGEEEQYLAVATNIEQ------------VQVYDLSSMSCSYVLA-GHSEIV 285
N L+ F G E + VA N + V+V+ L + ++ L G V
Sbjct: 128 NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGV 187
Query: 286 LCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVS 345
+D L K ++T S D ++++WD +++ CV GHM V F L ++S
Sbjct: 188 NYVDYYPLPD-KPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP-IIIS 245
Query: 346 GSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAH---------------------GKDIN 384
GS D T+K+W+ + + L+ +A H G D
Sbjct: 246 GSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEP 305
Query: 385 SLAVAPNDSLVCTGSQDRTAC 405
+L++ P LV +G ++ A
Sbjct: 306 TLSLDPVGKLVWSGGKNAAAS 326
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/118 (21%), Positives = 52/118 (44%)
Query: 417 TFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRG 476
TF + ++F P + V+T +++W+ +++ + + V F+ R
Sbjct: 8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARK 67
Query: 477 AQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 534
I+ D ++++ TGE + ++ H D I ++AV +G D V LW+
Sbjct: 68 NWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 3/89 (3%)
Query: 9 DRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVA 68
D + +WD C +GH VS +FHP ++ SGS+D T+++W+ K
Sbjct: 207 DLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTL--PIIISGSEDGTLKIWNSSTYKVEK 264
Query: 69 TLDKHFSRVTSMAITSDG-STLISAGRDK 96
TL+ R +A G I++G D
Sbjct: 265 TLNVGLERSWCIATHPTGRKNYIASGFDN 293
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 50/114 (43%), Gaps = 6/114 (5%)
Query: 4 LLEGADR-KVLVWDVDGGFC-THYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDL 61
+L G+D V +W+ + + F+GH+ V + F+P D S SG D TV+VW L
Sbjct: 112 VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNP-KDPSTFASGCLDRTVKVWSL 170
Query: 62 LAKKCVATLDKHFSR---VTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTV 112
TL R D +I+A D + +WD + SC T+
Sbjct: 171 GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL 224
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/168 (20%), Positives = 64/168 (38%), Gaps = 2/168 (1%)
Query: 368 MNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWS 427
M L K + + + P + V T +W V V + + + + +
Sbjct: 1 MKLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRA 60
Query: 428 VEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGL 487
+F +I S D I++++ + G + FE H + + ++S D
Sbjct: 61 GKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLT 120
Query: 488 VKLWTVRTGECI-ATYDKHEDKIWALAVGKK-TEMFATGGSDALVNLW 533
VKLW + T++ HE + +A K FA+G D V +W
Sbjct: 121 VKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW 168
Score = 32.3 bits (72), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 44 KSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDL 103
K+ + GSDD +RV++ + V + H + S+A+ ++S D V LW+
Sbjct: 67 KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW 126
Query: 104 -RDYSCKLTVPTYEMVEAVCAIPP 126
+++ + T +E A P
Sbjct: 127 ENNWALEQTFEGHEHFVMCVAFNP 150
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 82.4 bits (202), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 96/220 (43%), Gaps = 12/220 (5%)
Query: 321 GVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHG 380
G GH G V ++A S N L+S S D T+ W G DD + + +++ H
Sbjct: 11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTG--DDQKFGVPVRS---FKGHS 65
Query: 381 KDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITA 440
+ + + + + S D+T +W + + F GHK + SV+ ++I+
Sbjct: 66 HIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISG 125
Query: 441 SGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTR------GAQIVSCGADGLVKLWTVR 494
S DKTIK+W+I G CL T GH V + + I+S G D +VK W +
Sbjct: 126 SRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 184
Query: 495 TGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 534
+ A + H I L + A+ G D + LW+
Sbjct: 185 QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 85/174 (48%), Gaps = 13/174 (7%)
Query: 373 KAVVAAHGKDINSLAV-APNDSLVCTGSQDRTACVWRLPD-----LVSVVTFRGHKRGIW 426
+ + H + SLA A +L+ + S+D+T W+L V V +F+GH +
Sbjct: 10 RGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQ 69
Query: 427 SVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADG 486
+ ++AS DKT+++W ++ G + F GH S V+ + + I+S D
Sbjct: 70 DCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDK 129
Query: 487 LVKLWTVRTGECIATYDKHEDKIWALAV--GKKTE----MFATGGSDALVNLWH 534
+K+WT++ G+C+AT H D + + V +K + + G+D +V W+
Sbjct: 130 TIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWN 182
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/225 (26%), Positives = 94/225 (41%), Gaps = 42/225 (18%)
Query: 2 FALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDK--SLLFSGSDDATVRVW 59
+AL D+ + +WDV G F GHK V S+ D DK S++ SGS D T++VW
Sbjct: 79 YALSASWDKTLRLWDVATGETYQRFVGHKSDVMSV----DIDKKASMIISGSRDKTIKVW 134
Query: 60 DLLAKKCVATLDKHFSRVTSMAITS------DGSTLISAGRDKVVNLWDLRDYSCKLTVP 113
+ +C+ATL H V+ + + D T+ISAG DK+V W+L + +
Sbjct: 135 -TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFI 193
Query: 114 TYEM-VEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWN-ADSAC 171
+ + + A P G+ S G+ G + +WN A
Sbjct: 194 GHNSNINTLTASPDGTLIAS-----------------------AGKDGEIMLWNLAAKKA 230
Query: 172 LYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLL 216
+Y + D S ++ AAT G+ + D Q L+
Sbjct: 231 MYTLSAQDEVFSLAFSPNRYWLAAATA----TGIKVFSLDPQYLV 271
Score = 32.3 bits (72), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 76/358 (21%), Positives = 146/358 (40%), Gaps = 71/358 (19%)
Query: 68 ATLDKHFSRVTSMAITSDG--STLISAGRDKVVNLWDLRDYSCKLTVPT-----YEMVEA 120
TL+ H VTS+A TS G + L+SA RDK + W L K VP + +
Sbjct: 11 GTLEGHNGWVTSLA-TSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQ 69
Query: 121 VCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQ---KS 177
C + A+ + +S+++ +R+W+ + Y++
Sbjct: 70 DCTLTADGAY-ALSASWDK---------------------TLRLWDVATGETYQRFVGHK 107
Query: 178 SDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVG 237
SDV +S ++D A+ ++ ++ T++V K + + + L+G
Sbjct: 108 SDV-MSVDIDKK-----ASMIISGSRD-------------KTIKVWTIKGQCLAT--LLG 146
Query: 238 YNEEILDLKFLGEEEQ-----YLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCA 292
+N+ + ++ + E+ + A N + V+ ++L+ GH+ ++T
Sbjct: 147 HNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNS---NINTLT 203
Query: 293 LSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTI 352
S LI + KD + LW+ ++ + + V ++AFS + ++ ++ I
Sbjct: 204 ASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSP--NRYWLAAATATGI 260
Query: 353 KVWSFDG--LSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWR 408
KV+S D L DD +KA H SLA + + + G D VW+
Sbjct: 261 KVFSLDPQYLVDDLRPEFAGYSKA-AEPHAV---SLAWSADGQTLFAGYTDNVIRVWQ 314
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 96/220 (43%), Gaps = 12/220 (5%)
Query: 321 GVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHG 380
G GH G V ++A S N L+S S D T+ W G DD + + +++ H
Sbjct: 11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTG--DDQKFGVPVRS---FKGHS 65
Query: 381 KDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITA 440
+ + + + + S D+T +W + + F GHK + SV+ ++I+
Sbjct: 66 HIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISG 125
Query: 441 SGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTR------GAQIVSCGADGLVKLWTVR 494
S DKTIK+W+I G CL T GH V + + I+S G D +VK W +
Sbjct: 126 SRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 184
Query: 495 TGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 534
+ A + H I L + A+ G D + LW+
Sbjct: 185 QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 85/174 (48%), Gaps = 13/174 (7%)
Query: 373 KAVVAAHGKDINSLAV-APNDSLVCTGSQDRTACVWRLPD-----LVSVVTFRGHKRGIW 426
+ + H + SLA A +L+ + S+D+T W+L V V +F+GH +
Sbjct: 10 RGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQ 69
Query: 427 SVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADG 486
+ ++AS DKT+++W ++ G + F GH S V+ + + I+S D
Sbjct: 70 DCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDK 129
Query: 487 LVKLWTVRTGECIATYDKHEDKIWALAV--GKKTE----MFATGGSDALVNLWH 534
+K+WT++ G+C+AT H D + + V +K + + G+D +V W+
Sbjct: 130 TIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWN 182
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/225 (26%), Positives = 94/225 (41%), Gaps = 42/225 (18%)
Query: 2 FALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDK--SLLFSGSDDATVRVW 59
+AL D+ + +WDV G F GHK V S+ D DK S++ SGS D T++VW
Sbjct: 79 YALSASWDKTLRLWDVATGETYQRFVGHKSDVMSV----DIDKKASMIISGSRDKTIKVW 134
Query: 60 DLLAKKCVATLDKHFSRVTSMAITS------DGSTLISAGRDKVVNLWDLRDYSCKLTVP 113
+ +C+ATL H V+ + + D T+ISAG DK+V W+L + +
Sbjct: 135 -TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFI 193
Query: 114 TYEM-VEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWN-ADSAC 171
+ + + A P G+ S G+ G + +WN A
Sbjct: 194 GHNSNINTLTASPDGTLIAS-----------------------AGKDGEIMLWNLAAKKA 230
Query: 172 LYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLL 216
+Y + D S ++ AAT G+ + D Q L+
Sbjct: 231 MYTLSAQDEVFSLAFSPNRYWLAAATA----TGIKVFSLDPQYLV 271
Score = 32.3 bits (72), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 76/359 (21%), Positives = 147/359 (40%), Gaps = 71/359 (19%)
Query: 68 ATLDKHFSRVTSMAITSDG--STLISAGRDKVVNLWDLRDYSCKLTVPT-----YEMVEA 120
TL+ H VTS+A TS G + L+SA RDK + W L K VP + +
Sbjct: 11 GTLEGHNGWVTSLA-TSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQ 69
Query: 121 VCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQ---KS 177
C + A+ + +S+++ +R+W+ + Y++
Sbjct: 70 DCTLTADGAY-ALSASWDK---------------------TLRLWDVATGETYQRFVGHK 107
Query: 178 SDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVG 237
SDV +S ++D A+ ++ ++ T++V K + + + L+G
Sbjct: 108 SDV-MSVDIDKK-----ASMIISGSRD-------------KTIKVWTIKGQCLAT--LLG 146
Query: 238 YNEEILDLKFLGEEEQ-----YLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCA 292
+N+ + ++ + E+ + A N + V+ ++L+ GH+ ++T
Sbjct: 147 HNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNS---NINTLT 203
Query: 293 LSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTI 352
S LI + KD + LW+ ++ + + V ++AFS + ++ ++ I
Sbjct: 204 ASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSP--NRYWLAAATATGI 260
Query: 353 KVWSFDG--LSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRL 409
KV+S D L DD +KA H SLA + + + G D VW++
Sbjct: 261 KVFSLDPQYLVDDLRPEFAGYSKA-AEPHAV---SLAWSADGQTLFAGYTDNVIRVWQV 315
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 96/220 (43%), Gaps = 12/220 (5%)
Query: 321 GVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHG 380
G GH G V ++A S N L+S S D T+ W G DD + + +++ H
Sbjct: 5 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTG--DDQKFGVPVRS---FKGHS 59
Query: 381 KDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITA 440
+ + + + + S D+T +W + + F GHK + SV+ ++I+
Sbjct: 60 HIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISG 119
Query: 441 SGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTR------GAQIVSCGADGLVKLWTVR 494
S DKTIK+W+I G CL T GH V + + I+S G D +VK W +
Sbjct: 120 SRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 178
Query: 495 TGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 534
+ A + H I L + A+ G D + LW+
Sbjct: 179 QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 218
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 85/174 (48%), Gaps = 13/174 (7%)
Query: 373 KAVVAAHGKDINSLAV-APNDSLVCTGSQDRTACVWRLPD-----LVSVVTFRGHKRGIW 426
+ + H + SLA A +L+ + S+D+T W+L V V +F+GH +
Sbjct: 4 RGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQ 63
Query: 427 SVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADG 486
+ ++AS DKT+++W ++ G + F GH S V+ + + I+S D
Sbjct: 64 DCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDK 123
Query: 487 LVKLWTVRTGECIATYDKHEDKIWALAV--GKKTE----MFATGGSDALVNLWH 534
+K+WT++ G+C+AT H D + + V +K + + G+D +V W+
Sbjct: 124 TIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWN 176
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/225 (26%), Positives = 94/225 (41%), Gaps = 42/225 (18%)
Query: 2 FALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDK--SLLFSGSDDATVRVW 59
+AL D+ + +WDV G F GHK V S+ D DK S++ SGS D T++VW
Sbjct: 73 YALSASWDKTLRLWDVATGETYQRFVGHKSDVMSV----DIDKKASMIISGSRDKTIKVW 128
Query: 60 DLLAKKCVATLDKHFSRVTSMAITS------DGSTLISAGRDKVVNLWDLRDYSCKLTVP 113
+ +C+ATL H V+ + + D T+ISAG DK+V W+L + +
Sbjct: 129 -TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFI 187
Query: 114 TYEM-VEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWN-ADSAC 171
+ + + A P G+ S G+ G + +WN A
Sbjct: 188 GHNSNINTLTASPDGTLIAS-----------------------AGKDGEIMLWNLAAKKA 224
Query: 172 LYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLL 216
+Y + D S ++ AAT G+ + D Q L+
Sbjct: 225 MYTLSAQDEVFSLAFSPNRYWLAAATA----TGIKVFSLDPQYLV 265
Score = 32.3 bits (72), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 76/359 (21%), Positives = 147/359 (40%), Gaps = 71/359 (19%)
Query: 68 ATLDKHFSRVTSMAITSDG--STLISAGRDKVVNLWDLRDYSCKLTVPT-----YEMVEA 120
TL+ H VTS+A TS G + L+SA RDK + W L K VP + +
Sbjct: 5 GTLEGHNGWVTSLA-TSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQ 63
Query: 121 VCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQ---KS 177
C + A+ + +S+++ +R+W+ + Y++
Sbjct: 64 DCTLTADGAY-ALSASWDK---------------------TLRLWDVATGETYQRFVGHK 101
Query: 178 SDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVG 237
SDV +S ++D A+ ++ ++ T++V K + + + L+G
Sbjct: 102 SDV-MSVDIDKK-----ASMIISGSRD-------------KTIKVWTIKGQCLAT--LLG 140
Query: 238 YNEEILDLKFLGEEEQ-----YLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCA 292
+N+ + ++ + E+ + A N + V+ ++L+ GH+ ++T
Sbjct: 141 HNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNS---NINTLT 197
Query: 293 LSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTI 352
S LI + KD + LW+ ++ + + V ++AFS + ++ ++ I
Sbjct: 198 ASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSP--NRYWLAAATATGI 254
Query: 353 KVWSFDG--LSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRL 409
KV+S D L DD +KA H SLA + + + G D VW++
Sbjct: 255 KVFSLDPQYLVDDLRPEFAGYSKA-AEPHAV---SLAWSADGQTLFAGYTDNVIRVWQV 309
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 96/220 (43%), Gaps = 12/220 (5%)
Query: 321 GVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHG 380
G GH G V ++A S N L+S S D T+ W G DD + + +++ H
Sbjct: 11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTG--DDQKFGVPVRS---FKGHS 65
Query: 381 KDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITA 440
+ + + + + S D+T +W + + F GHK + SV+ ++I+
Sbjct: 66 HIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISG 125
Query: 441 SGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTR------GAQIVSCGADGLVKLWTVR 494
S DKTIK+W+I G CL T GH V + + I+S G D +VK W +
Sbjct: 126 SRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 184
Query: 495 TGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 534
+ A + H I L + A+ G D + LW+
Sbjct: 185 QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 85/174 (48%), Gaps = 13/174 (7%)
Query: 373 KAVVAAHGKDINSLAV-APNDSLVCTGSQDRTACVWRLPD-----LVSVVTFRGHKRGIW 426
+ + H + SLA A +L+ + S+D+T W+L V V +F+GH +
Sbjct: 10 RGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQ 69
Query: 427 SVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADG 486
+ ++AS DKT+++W ++ G + F GH S V+ + + I+S D
Sbjct: 70 DCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDK 129
Query: 487 LVKLWTVRTGECIATYDKHEDKIWALAV--GKKTE----MFATGGSDALVNLWH 534
+K+WT++ G+C+AT H D + + V +K + + G+D +V W+
Sbjct: 130 TIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWN 182
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/225 (26%), Positives = 94/225 (41%), Gaps = 42/225 (18%)
Query: 2 FALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDK--SLLFSGSDDATVRVW 59
+AL D+ + +WDV G F GHK V S+ D DK S++ SGS D T++VW
Sbjct: 79 YALSASWDKTLRLWDVATGETYQRFVGHKSDVMSV----DIDKKASMIISGSRDKTIKVW 134
Query: 60 DLLAKKCVATLDKHFSRVTSMAITS------DGSTLISAGRDKVVNLWDLRDYSCKLTVP 113
+ +C+ATL H V+ + + D T+ISAG DK+V W+L + +
Sbjct: 135 -TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFI 193
Query: 114 TYEM-VEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWN-ADSAC 171
+ + + A P G+ S G+ G + +WN A
Sbjct: 194 GHNSNINTLTASPDGTLIAS-----------------------AGKDGEIMLWNLAAKKA 230
Query: 172 LYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLL 216
+Y + D S ++ AAT G+ + D Q L+
Sbjct: 231 MYTLSAQDEVFSLAFSPNRYWLAAATA----TGIKVFSLDPQYLV 271
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 76/359 (21%), Positives = 147/359 (40%), Gaps = 71/359 (19%)
Query: 68 ATLDKHFSRVTSMAITSDG--STLISAGRDKVVNLWDLRDYSCKLTVPT-----YEMVEA 120
TL+ H VTS+A TS G + L+SA RDK + W L K VP + +
Sbjct: 11 GTLEGHNGWVTSLA-TSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQ 69
Query: 121 VCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQ---KS 177
C + A+ + +S+++ +R+W+ + Y++
Sbjct: 70 DCTLTADGAY-ALSASWDK---------------------TLRLWDVATGETYQRFVGHK 107
Query: 178 SDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVG 237
SDV +S ++D A+ ++ ++ T++V K + + + L+G
Sbjct: 108 SDV-MSVDIDKK-----ASMIISGSRD-------------KTIKVWTIKGQCLAT--LLG 146
Query: 238 YNEEILDLKFLGEEEQ-----YLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCA 292
+N+ + ++ + E+ + A N + V+ ++L+ GH+ ++T
Sbjct: 147 HNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNS---NINTLT 203
Query: 293 LSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTI 352
S LI + KD + LW+ ++ + + V ++AFS + ++ ++ I
Sbjct: 204 ASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSP--NRYWLAAATATGI 260
Query: 353 KVWSFDG--LSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRL 409
KV+S D L DD +KA H SLA + + + G D VW++
Sbjct: 261 KVFSLDPQYLVDDLRPEFAGYSKA-AEPHAV---SLAWSADGQTLFAGYTDNVIRVWQV 315
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 96/220 (43%), Gaps = 12/220 (5%)
Query: 321 GVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHG 380
G GH G V ++A S N L+S S D T+ W G DD + + +++ H
Sbjct: 11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTG--DDQKFGVPVRS---FKGHS 65
Query: 381 KDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITA 440
+ + + + + S D+T +W + + F GHK + SV+ ++I+
Sbjct: 66 HIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISG 125
Query: 441 SGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTR------GAQIVSCGADGLVKLWTVR 494
S DKTIK+W+I G CL T GH V + + I+S G D +VK W +
Sbjct: 126 SRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 184
Query: 495 TGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 534
+ A + H I L + A+ G D + LW+
Sbjct: 185 QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 85/174 (48%), Gaps = 13/174 (7%)
Query: 373 KAVVAAHGKDINSLAV-APNDSLVCTGSQDRTACVWRLPD-----LVSVVTFRGHKRGIW 426
+ + H + SLA A +L+ + S+D+T W+L V V +F+GH +
Sbjct: 10 RGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQ 69
Query: 427 SVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADG 486
+ ++AS DKT+++W ++ G + F GH S V+ + + I+S D
Sbjct: 70 DCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDK 129
Query: 487 LVKLWTVRTGECIATYDKHEDKIWALAV--GKKTE----MFATGGSDALVNLWH 534
+K+WT++ G+C+AT H D + + V +K + + G+D +V W+
Sbjct: 130 TIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWN 182
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/225 (26%), Positives = 94/225 (41%), Gaps = 42/225 (18%)
Query: 2 FALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDK--SLLFSGSDDATVRVW 59
+AL D+ + +WDV G F GHK V S+ D DK S++ SGS D T++VW
Sbjct: 79 YALSASWDKTLRLWDVATGETYQRFVGHKSDVMSV----DIDKKASMIISGSRDKTIKVW 134
Query: 60 DLLAKKCVATLDKHFSRVTSMAITS------DGSTLISAGRDKVVNLWDLRDYSCKLTVP 113
+ +C+ATL H V+ + + D T+ISAG DK+V W+L + +
Sbjct: 135 -TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFI 193
Query: 114 TYEM-VEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWN-ADSAC 171
+ + + A P G+ S G+ G + +WN A
Sbjct: 194 GHNSNINTLTASPDGTLIAS-----------------------AGKDGEIMLWNLAAKKA 230
Query: 172 LYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLL 216
+Y + D S ++ AAT G+ + D Q L+
Sbjct: 231 MYTLSAQDEVFSLAFSPNRYWLAAATA----TGIKVFSLDPQYLV 271
Score = 33.1 bits (74), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 76/359 (21%), Positives = 147/359 (40%), Gaps = 71/359 (19%)
Query: 68 ATLDKHFSRVTSMAITSDG--STLISAGRDKVVNLWDLRDYSCKLTVPT-----YEMVEA 120
TL+ H VTS+A TS G + L+SA RDK + W L K VP + +
Sbjct: 11 GTLEGHNGWVTSLA-TSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQ 69
Query: 121 VCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQ---KS 177
C + A+ + +S+++ +R+W+ + Y++
Sbjct: 70 DCTLTADGAY-ALSASWDK---------------------TLRLWDVATGETYQRFVGHK 107
Query: 178 SDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVG 237
SDV +S ++D A+ ++ ++ T++V K + + + L+G
Sbjct: 108 SDV-MSVDIDKK-----ASMIISGSRD-------------KTIKVWTIKGQCLAT--LLG 146
Query: 238 YNEEILDLKFLGEEEQ-----YLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCA 292
+N+ + ++ + E+ + A N + V+ ++L+ GH+ ++T
Sbjct: 147 HNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNS---NINTLT 203
Query: 293 LSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTI 352
S LI + KD + LW+ ++ + + V ++AFS + ++ ++ I
Sbjct: 204 ASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSP--NRYWLAAATATGI 260
Query: 353 KVWSFDG--LSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRL 409
KV+S D L DD +P A H SLA + + + G D VW++
Sbjct: 261 KVFSLDPQYLVDDL-RPEFAGYSAAAEPHAV---SLAWSADGQTLFAGYTDNVIRVWQV 315
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/233 (28%), Positives = 109/233 (46%), Gaps = 20/233 (8%)
Query: 304 SKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDD 363
S+D +VRLW + + V G + +V + + + L+ G D I +
Sbjct: 36 SRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSE-KELLLFGGKDTXIN--GVPLFATS 92
Query: 364 AEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKR 423
E P+ + H ++ SL+ D +V +GS D+TA VW+ LV + H
Sbjct: 93 GEDPL-----YTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWKEGSLV--YNLQAHNA 143
Query: 424 GIWS---VEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIV 480
+W V FS + +TAS DKTIK+W + +KTF G + V+R + +
Sbjct: 144 SVWDAKVVSFS--ENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGHFI 199
Query: 481 SCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 533
SC DGL+KL TG+ + TY+ HE ++ + + ++ + G D V +W
Sbjct: 200 SCSNDGLIKLVDXHTGDVLRTYEGHESFVYCIKLLPNGDIVSC-GEDRTVRIW 251
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 52/122 (42%), Gaps = 9/122 (7%)
Query: 4 LLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFH-PDTDKSLLFSGSDDATVRVWDLL 62
L AD+ + +W D K G+ + ++ H D S S+D +++ D
Sbjct: 159 LTASADKTIKLWQND-----KVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDXH 213
Query: 63 AKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCK--LTVPTYEMVEA 120
+ T + H S V + + +G ++S G D+ V +W + S K +T+P +
Sbjct: 214 TGDVLRTYEGHESFVYCIKLLPNGD-IVSCGEDRTVRIWSKENGSLKQVITLPAISIWSV 272
Query: 121 VC 122
C
Sbjct: 273 DC 274
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 104/217 (47%), Gaps = 10/217 (4%)
Query: 321 GVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHG 380
G GH G V +A + + + ++S S D TI +W L+ D E + +A+ H
Sbjct: 32 GTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWK---LTRD-ETNYGIPQRAL-RGHS 86
Query: 381 KDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITA 440
++ + ++ + +GS D T +W L + F GH + + SV FS ++ +++
Sbjct: 87 HFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSG 146
Query: 441 SGDKTIKIWSISDGSCLKTF--EGHTS--SVLRASFLTRGAQIVSCGADGLVKLWTVRTG 496
S DKTIK+W+ + G C T E H+ S +R S + IVSCG D LVK+W +
Sbjct: 147 SRDKTIKLWN-TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC 205
Query: 497 ECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 533
+ + H + + V + A+GG D LW
Sbjct: 206 KLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLW 242
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 61/224 (27%), Positives = 107/224 (47%), Gaps = 18/224 (8%)
Query: 230 ILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLD 289
I + L G++ + D+ + + Q+ + ++++DL++ + + GH++ VL +
Sbjct: 77 IPQRALRGHSHFVSDV-VISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSV- 134
Query: 290 TCALSSGKILIVTGSKDNSVRLWDSESRCCVGV-GTGHMGAVGAVAFSKKLQN-FLVSGS 347
A SS IV+GS+D +++LW++ C V H V V FS N +VS
Sbjct: 135 --AFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCG 192
Query: 348 SDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVW 407
D +KVW+ N K K H +N++ V+P+ SL +G +D A +W
Sbjct: 193 WDKLVKVWNL----------ANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLW 242
Query: 408 RLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSI 451
L + + T G I ++ FSP + A+G +IKIW +
Sbjct: 243 DLNEGKHLYTLDGGDI-INALCFSPNRYWLCAATG-PSIKIWDL 284
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 74/175 (42%), Gaps = 11/175 (6%)
Query: 370 LKAKAVVAAHGKDINSLAVAPN-DSLVCTGSQDRTACVWRLPD-----LVSVVTFRGHKR 423
+ + + H + +A P ++ + S+D+T +W+L + RGH
Sbjct: 28 MTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSH 87
Query: 424 GIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCG 483
+ V S Q ++ S D T+++W ++ G+ + F GHT VL +F + QIVS
Sbjct: 88 FVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGS 147
Query: 484 ADGLVKLWTVRTGECIATYDKHEDKIWALAV----GKKTEMFATGGSDALVNLWH 534
D +KLW G C T W V + + G D LV +W+
Sbjct: 148 RDKTIKLWNT-LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWN 201
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 93/213 (43%), Gaps = 19/213 (8%)
Query: 299 LIVTGSKDNSVRLWD-SESRCCVGVGT----GHMGAVGAVAFSKKLQNFLVSGSSDHTIK 353
+I++ S+D ++ +W + G+ GH V V S Q F +SGS D T++
Sbjct: 53 MILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQ-FALSGSWDGTLR 111
Query: 354 VWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLV 413
+W H KD+ S+A + ++ + +GS+D+T +W +
Sbjct: 112 LWDL----------TTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVC 161
Query: 414 S-VVTFRGHKRGIWSVEFSP--VDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRA 470
V H + V FSP + ++++ DK +K+W++++ GHT +
Sbjct: 162 KYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTV 221
Query: 471 SFLTRGAQIVSCGADGLVKLWTVRTGECIATYD 503
+ G+ S G DG LW + G+ + T D
Sbjct: 222 TVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLD 254
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 54/121 (44%), Gaps = 8/121 (6%)
Query: 9 DRKVLVW-----DVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLA 63
D+ +++W + + G +GH VS ++ +D SGS D T+R+WDL
Sbjct: 60 DKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVI--SSDGQFALSGSWDGTLRLWDLTT 117
Query: 64 KKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCA 123
H V S+A +SD ++S RDK + LW+ CK TV E V
Sbjct: 118 GTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGV-CKYTVQDESHSEWVSC 176
Query: 124 I 124
+
Sbjct: 177 V 177
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 3/119 (2%)
Query: 9 DRKVLVWDVDGGFCTHYFK--GHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKC 66
D+ + +W+ G C + + H VS + F P++ ++ S D V+VW+L K
Sbjct: 149 DKTIKLWNTLG-VCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKL 207
Query: 67 VATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIP 125
H + ++ ++ DGS S G+D LWDL + T+ +++ A+C P
Sbjct: 208 KTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSP 266
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 54/112 (48%), Gaps = 7/112 (6%)
Query: 2 FALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDL 61
FAL D + +WD+ G T F GH V S+ F D + + SGS D T+++W+
Sbjct: 100 FALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQ--IVSGSRDKTIKLWNT 157
Query: 62 LAKKCVATLDKHFSRVTS---MAITSDGSTLISAGRDKVVNLWDLRDYSCKL 110
L D+ S S + S ++S G DK+V +W+L + CKL
Sbjct: 158 LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN--CKL 207
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 50/106 (47%), Gaps = 13/106 (12%)
Query: 7 GADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKC 66
G D + ++WD++ G + G +++++ F P+ + ++++WDL K
Sbjct: 234 GKDGQAMLWDLNEGKHLYTLDGGD-IINALCFSPN---RYWLCAATGPSIKIWDLEGKII 289
Query: 67 VATLDKHF---------SRVTSMAITSDGSTLISAGRDKVVNLWDL 103
V L + + TS+A ++DG TL + D +V +W +
Sbjct: 290 VDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQV 335
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 104/217 (47%), Gaps = 10/217 (4%)
Query: 321 GVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHG 380
G GH G V +A + + + ++S S D TI +W L+ D E + +A+ H
Sbjct: 9 GTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWK---LTRD-ETNYGIPQRAL-RGHS 63
Query: 381 KDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITA 440
++ + ++ + +GS D T +W L + F GH + + SV FS ++ +++
Sbjct: 64 HFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSG 123
Query: 441 SGDKTIKIWSISDGSCLKTF--EGHTS--SVLRASFLTRGAQIVSCGADGLVKLWTVRTG 496
S DKTIK+W+ + G C T E H+ S +R S + IVSCG D LVK+W +
Sbjct: 124 SRDKTIKLWN-TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC 182
Query: 497 ECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 533
+ + H + + V + A+GG D LW
Sbjct: 183 KLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLW 219
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 61/224 (27%), Positives = 107/224 (47%), Gaps = 18/224 (8%)
Query: 230 ILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLD 289
I + L G++ + D+ + + Q+ + ++++DL++ + + GH++ VL +
Sbjct: 54 IPQRALRGHSHFVSDV-VISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSV- 111
Query: 290 TCALSSGKILIVTGSKDNSVRLWDSESRCCVGV-GTGHMGAVGAVAFSKKLQN-FLVSGS 347
A SS IV+GS+D +++LW++ C V H V V FS N +VS
Sbjct: 112 --AFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCG 169
Query: 348 SDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVW 407
D +KVW+ N K K H +N++ V+P+ SL +G +D A +W
Sbjct: 170 WDKLVKVWNL----------ANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLW 219
Query: 408 RLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSI 451
L + + T G I ++ FSP + A+G +IKIW +
Sbjct: 220 DLNEGKHLYTLDGGDI-INALCFSPNRYWLCAATG-PSIKIWDL 261
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 74/175 (42%), Gaps = 11/175 (6%)
Query: 370 LKAKAVVAAHGKDINSLAVAPN-DSLVCTGSQDRTACVWRLPD-----LVSVVTFRGHKR 423
+ + + H + +A P ++ + S+D+T +W+L + RGH
Sbjct: 5 MTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSH 64
Query: 424 GIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCG 483
+ V S Q ++ S D T+++W ++ G+ + F GHT VL +F + QIVS
Sbjct: 65 FVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGS 124
Query: 484 ADGLVKLWTVRTGECIATYDKHEDKIWALAV----GKKTEMFATGGSDALVNLWH 534
D +KLW G C T W V + + G D LV +W+
Sbjct: 125 RDKTIKLWNT-LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWN 178
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 93/213 (43%), Gaps = 19/213 (8%)
Query: 299 LIVTGSKDNSVRLWD-SESRCCVGVGT----GHMGAVGAVAFSKKLQNFLVSGSSDHTIK 353
+I++ S+D ++ +W + G+ GH V V S Q F +SGS D T++
Sbjct: 30 MILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQ-FALSGSWDGTLR 88
Query: 354 VWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLV 413
+W H KD+ S+A + ++ + +GS+D+T +W +
Sbjct: 89 LWDL----------TTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVC 138
Query: 414 S-VVTFRGHKRGIWSVEFSP--VDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRA 470
V H + V FSP + ++++ DK +K+W++++ GHT +
Sbjct: 139 KYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTV 198
Query: 471 SFLTRGAQIVSCGADGLVKLWTVRTGECIATYD 503
+ G+ S G DG LW + G+ + T D
Sbjct: 199 TVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLD 231
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 54/121 (44%), Gaps = 8/121 (6%)
Query: 9 DRKVLVW-----DVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLA 63
D+ +++W + + G +GH VS ++ +D SGS D T+R+WDL
Sbjct: 37 DKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVI--SSDGQFALSGSWDGTLRLWDLTT 94
Query: 64 KKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCA 123
H V S+A +SD ++S RDK + LW+ CK TV E V
Sbjct: 95 GTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGV-CKYTVQDESHSEWVSC 153
Query: 124 I 124
+
Sbjct: 154 V 154
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 3/119 (2%)
Query: 9 DRKVLVWDVDGGFCTHYFK--GHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKC 66
D+ + +W+ G C + + H VS + F P++ ++ S D V+VW+L K
Sbjct: 126 DKTIKLWNTLG-VCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKL 184
Query: 67 VATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIP 125
H + ++ ++ DGS S G+D LWDL + T+ +++ A+C P
Sbjct: 185 KTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSP 243
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 54/112 (48%), Gaps = 7/112 (6%)
Query: 2 FALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDL 61
FAL D + +WD+ G T F GH V S+ F +D + SGS D T+++W+
Sbjct: 77 FALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAF--SSDNRQIVSGSRDKTIKLWNT 134
Query: 62 LAKKCVATLDKHFSRVTS---MAITSDGSTLISAGRDKVVNLWDLRDYSCKL 110
L D+ S S + S ++S G DK+V +W+L + CKL
Sbjct: 135 LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN--CKL 184
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 50/106 (47%), Gaps = 13/106 (12%)
Query: 7 GADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKC 66
G D + ++WD++ G + G +++++ F P+ + ++++WDL K
Sbjct: 211 GKDGQAMLWDLNEGKHLYTLDGGD-IINALCFSPN---RYWLCAATGPSIKIWDLEGKII 266
Query: 67 VATLDKHF---------SRVTSMAITSDGSTLISAGRDKVVNLWDL 103
V L + + TS+A ++DG TL + D +V +W +
Sbjct: 267 VDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQV 312
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 80.1 bits (196), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 94/220 (42%), Gaps = 12/220 (5%)
Query: 321 GVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHG 380
G GH G V ++A S N L+S S D T+ W G DD + + +++ H
Sbjct: 11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTG--DDQKFGVPVRS---FKGHS 65
Query: 381 KDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITA 440
+ + + + + S D+T +W + + F GHK + SV+ +I+
Sbjct: 66 HIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISG 125
Query: 441 SGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTR------GAQIVSCGADGLVKLWTVR 494
S DKTIK+W+I G CL T GH V + + I+S G D VK W +
Sbjct: 126 SRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLN 184
Query: 495 TGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 534
+ A + H I L + A+ G D + LW+
Sbjct: 185 QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWN 224
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 71/143 (49%), Gaps = 7/143 (4%)
Query: 373 KAVVAAHGKDINSLAV-APNDSLVCTGSQDRTACVWRLPD-----LVSVVTFRGHKRGIW 426
+ + H + SLA A +L+ + S+D+T W+L V V +F+GH +
Sbjct: 10 RGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQ 69
Query: 427 SVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADG 486
+ ++AS DKT+++W ++ G + F GH S V + + I+S D
Sbjct: 70 DCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDK 129
Query: 487 LVKLWTVRTGECIATYDKHEDKI 509
+K+WT++ G+C+AT H D +
Sbjct: 130 TIKVWTIK-GQCLATLLGHNDWV 151
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 60/225 (26%), Positives = 91/225 (40%), Gaps = 42/225 (18%)
Query: 2 FALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDK--SLLFSGSDDATVRVW 59
+AL D+ + +WDV G F GHK V S+ D DK S + SGS D T++VW
Sbjct: 79 YALSASWDKTLRLWDVATGETYQRFVGHKSDVXSV----DIDKKASXIISGSRDKTIKVW 134
Query: 60 DLLAKKCVATLDKHFSRVTSMAITS------DGSTLISAGRDKVVNLWDLRDYSCKLTVP 113
+ +C+ATL H V+ + + D T+ISAG DK V W+L + +
Sbjct: 135 -TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFI 193
Query: 114 TYEM-VEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWN-ADSAC 171
+ + + A P G+ S G+ G + +WN A
Sbjct: 194 GHNSNINTLTASPDGTLIAS-----------------------AGKDGEIXLWNLAAKKA 230
Query: 172 LYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLL 216
Y + D S ++ AAT G+ + D Q L+
Sbjct: 231 XYTLSAQDEVFSLAFSPNRYWLAAATA----TGIKVFSLDPQYLV 271
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 76/359 (21%), Positives = 145/359 (40%), Gaps = 71/359 (19%)
Query: 68 ATLDKHFSRVTSMAITSDG--STLISAGRDKVVNLWDLRDYSCKLTVPT-----YEMVEA 120
TL+ H VTS+A TS G + L+SA RDK + W L K VP + +
Sbjct: 11 GTLEGHNGWVTSLA-TSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQ 69
Query: 121 VCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQ---KS 177
C + A+ + +S+++ +R+W+ + Y++
Sbjct: 70 DCTLTADGAY-ALSASWDK---------------------TLRLWDVATGETYQRFVGHK 107
Query: 178 SDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVG 237
SDV S ++D A+ ++ ++ T++V K + + + L+G
Sbjct: 108 SDVX-SVDIDKK-----ASXIISGSRD-------------KTIKVWTIKGQCLAT--LLG 146
Query: 238 YNEEILDLKFLGEEEQ-----YLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCA 292
+N+ + ++ + E+ + A N + V+ ++L+ GH+ ++T
Sbjct: 147 HNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNS---NINTLT 203
Query: 293 LSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTI 352
S LI + KD + LW+ ++ + V ++AFS + ++ ++ I
Sbjct: 204 ASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQ-DEVFSLAFSP--NRYWLAAATATGI 260
Query: 353 KVWSFDG--LSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRL 409
KV+S D L DD +KA H SLA + + + G D VW++
Sbjct: 261 KVFSLDPQYLVDDLRPEFAGYSKA-AEPHAV---SLAWSADGQTLFAGYTDNVIRVWQV 315
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 80.1 bits (196), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 103/235 (43%), Gaps = 23/235 (9%)
Query: 278 LAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSE-----SRCCVGVG----TGHMG 328
L GH V L +V+ S+D ++ W S C G+ GH
Sbjct: 9 LTGHRGWVTSLACPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSA 68
Query: 329 AVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAV 388
V VA S NF VS S DH++++W+ N + + H KD+ S+A
Sbjct: 69 FVSDVALSNN-GNFAVSASWDHSLRLWNL----------QNGQCQYKFLGHTKDVLSVAF 117
Query: 389 APNDSLVCTGSQDRTACVWRLPDLVSVVTFRG-HKRGIWSVEFSP-VDQVVITASG-DKT 445
+P++ + +G +D VW + RG H + V FSP +D VI + G D
Sbjct: 118 SPDNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNL 177
Query: 446 IKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIA 500
+K+W ++ G + +GHT+ V + G+ S DG+ +LW + GE ++
Sbjct: 178 VKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALS 232
Score = 75.9 bits (185), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 100/216 (46%), Gaps = 8/216 (3%)
Query: 324 TGHMGAVGAVAFSKKLQNF--LVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGK 381
TGH G V ++A + + +VS S D T+ W + +E L + + H
Sbjct: 10 TGHRGWVTSLACPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRL-EGHSA 68
Query: 382 DINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITAS 441
++ +A++ N + + S D + +W L + F GH + + SV FSP ++ +++
Sbjct: 69 FVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGG 128
Query: 442 GDKTIKIWSISDGSCLKTFE--GHTS--SVLRASFLTRGAQIVSCGADGLVKLWTVRTGE 497
D +++W++ G C+ T HT S +R S IVS G D LVK+W + TG
Sbjct: 129 RDNALRVWNVK-GECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGR 187
Query: 498 CIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 533
+ H + + ++ V + A+ D + LW
Sbjct: 188 LVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLW 223
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 51/99 (51%), Gaps = 3/99 (3%)
Query: 7 GADRKVLVWDVDGGFCTHYFK--GHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK 64
G D + VW+V G C H H VS + F P D ++ SG D V+VWDL
Sbjct: 128 GRDNALRVWNVKGE-CMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATG 186
Query: 65 KCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDL 103
+ V L H + VTS+ ++ DGS S+ +D V LWDL
Sbjct: 187 RLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDL 225
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 84/179 (46%), Gaps = 16/179 (8%)
Query: 233 KRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCA 292
+RL G++ + D+ L + A+ +++++L + C Y GH++ VL + A
Sbjct: 61 RRLEGHSAFVSDVA-LSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVL---SVA 116
Query: 293 LSSGKILIVTGSKDNSVRLWDSESRCCVGVGTG-HMGAVGAVAFSKKLQ-NFLVSGSSDH 350
S IV+G +DN++R+W+ + C + G H V V FS L +VSG D+
Sbjct: 117 FSPDNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDN 176
Query: 351 TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRL 409
+KVW +LK H + S+ V+P+ SL + +D A +W L
Sbjct: 177 LVKVWDL----ATGRLVTDLK------GHTNYVTSVTVSPDGSLCASSDKDGVARLWDL 225
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/301 (20%), Positives = 116/301 (38%), Gaps = 53/301 (17%)
Query: 20 GFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTS 79
G +GH VS + + + S S D ++R+W+L +C H V S
Sbjct: 57 GLPDRRLEGHSAFVSDVAL--SNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLS 114
Query: 80 MAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQ 139
+A + D ++S GRD + +W+++ C T+ + V + + D+ +
Sbjct: 115 VAFSPDNRQIVSGGRDNALRVWNVKG-ECMHTLSRGAHTDWVSCVRFSPSLDAPV----- 168
Query: 140 QTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVL 199
++ G +V++W+ + L ++ T+ TV
Sbjct: 169 -------------IVSGGWDNLVKVWDLATGRLVT----------DLKGHTNYVTSVTVS 205
Query: 200 PSNQGLLCVTADQ----QLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYL 255
P G LC ++D+ +L T E LS+ G I + F +Y
Sbjct: 206 P--DGSLCASSDKDGVARLWDLTKGEA--------LSEMAAG--APINQICF--SPNRYW 251
Query: 256 AVATNIEQVQVYDLSSMSCSYVLA----GHSEIVLCLDTCALSSGKILIVTGSKDNSVRL 311
A + ++++DL + LA G +IV + A S+ + +G DN +R+
Sbjct: 252 MCAATEKGIRIFDLENKDIIVELAPEHQGSKKIVPECVSIAWSADGSTLYSGYTDNVIRV 311
Query: 312 W 312
W
Sbjct: 312 W 312
Score = 36.6 bits (83), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 49/146 (33%), Gaps = 49/146 (33%)
Query: 7 GADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK- 65
G D V VWD+ G KGH V+S+ PD SL S D R+WDL +
Sbjct: 173 GWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPD--GSLCASSDKDGVARLWDLTKGEA 230
Query: 66 ----------------------CVAT------------------------LDKHFSRVTS 79
C AT K S
Sbjct: 231 LSEMAAGAPINQICFSPNRYWMCAATEKGIRIFDLENKDIIVELAPEHQGSKKIVPECVS 290
Query: 80 MAITSDGSTLISAGRDKVVNLWDLRD 105
+A ++DGSTL S D V+ +W + +
Sbjct: 291 IAWSADGSTLYSGYTDNVIRVWGVSE 316
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 50/95 (52%), Gaps = 12/95 (12%)
Query: 26 FKGHKGVVSSILFHPDTDKSL--LFSGSDDATVRVW----DLLAKKCV-----ATLDKHF 74
GH+G V+S L P T ++ + S S D T+ W D + +C L+ H
Sbjct: 9 LTGHRGWVTS-LACPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHS 67
Query: 75 SRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCK 109
+ V+ +A++++G+ +SA D + LW+L++ C+
Sbjct: 68 AFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQ 102
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/263 (27%), Positives = 123/263 (46%), Gaps = 16/263 (6%)
Query: 272 MSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES-RCCVGVGTGHMGAV 330
+ + L GH V+ +D +S + + S D +RLWD E+ + + G + A
Sbjct: 70 LDLQWSLEGHQLGVVSVD---ISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAW 126
Query: 331 GAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP 390
+AFS Q +L +G+ H KV F S E ++ + GK I S+A +P
Sbjct: 127 -TLAFSPDSQ-YLATGT--HVGKVNIFGVESGKKEYSLDTR--------GKFILSIAYSP 174
Query: 391 NDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWS 450
+ + +G+ D ++ + + T GH I S+ FSP Q+++TAS D IKI+
Sbjct: 175 DGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYD 234
Query: 451 ISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIW 510
+ + T GH S VL +F VS +D VK+W V T C+ T+ H+D++W
Sbjct: 235 VQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVW 294
Query: 511 ALAVGKKTEMFATGGSDALVNLW 533
+ + G D ++++
Sbjct: 295 GVKYNGNGSKIVSVGDDQEIHIY 317
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 91/217 (41%), Gaps = 15/217 (6%)
Query: 300 IVTGSKDNSVRLWD--SESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSF 357
+VTGS D+ V++W E GH V +V S L S S D I++W
Sbjct: 51 VVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLP-IAASSSLDAHIRLWDL 109
Query: 358 DGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVT 417
+ + +Q ++ A V D +LA +P+ + TG+ ++ + +
Sbjct: 110 E----NGKQIKSIDAGPV------DAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYS 159
Query: 418 FRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGA 477
+ I S+ +SP + + + + D I I+ I+ G L T EGH + +F
Sbjct: 160 LDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQ 219
Query: 478 QIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAV 514
+V+ DG +K++ V+ T H W L V
Sbjct: 220 LLVTASDDGYIKIYDVQHANLAGTLSGHAS--WVLNV 254
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 55/106 (51%), Gaps = 3/106 (2%)
Query: 4 LLEGA-DRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLL 62
L GA D + ++D+ G H +GH + S+ F PD+ LL + SDD ++++D+
Sbjct: 179 LASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDS--QLLVTASDDGYIKIYDVQ 236
Query: 63 AKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSC 108
TL H S V ++A D + +S+ DK V +WD+ +C
Sbjct: 237 HANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTC 282
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 47/120 (39%), Gaps = 6/120 (5%)
Query: 419 RGHKRGIWSVEFS----PVDQVVITASGDKTIKIWSISDG--SCLKTFEGHTSSVLRASF 472
+ H IWSV + + V+T S D +K+W D + EGH V+
Sbjct: 29 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDI 88
Query: 473 LTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNL 532
S D ++LW + G+ I + D W LA ++ ATG VN+
Sbjct: 89 SHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNI 148
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Query: 11 KVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATL 70
KV ++ V+ G + + SI + PD L SG+ D + ++D+ K + TL
Sbjct: 145 KVNIFGVESGKKEYSLDTRGKFILSIAYSPD--GKYLASGAIDGIINIFDIATGKLLHTL 202
Query: 71 DKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLR 104
+ H + S+ + D L++A D + ++D++
Sbjct: 203 EGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQ 236
Score = 36.2 bits (82), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 9 DRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVA 68
D + ++DV GH V ++ F PD + S S D +V+VWD+ + CV
Sbjct: 227 DGYIKIYDVQHANLAGTLSGHASWVLNVAFCPD--DTHFVSSSSDKSVKVWDVGTRTCVH 284
Query: 69 TLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWD 102
T H +V + +GS ++S G D+ ++++D
Sbjct: 285 TFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318
Score = 32.3 bits (72), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 29/138 (21%), Positives = 56/138 (40%), Gaps = 8/138 (5%)
Query: 9 DRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVA 68
D + +WD++ G ++ F PD+ L +G+ V ++ + + K
Sbjct: 101 DAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDS--QYLATGTHVGKVNIFGVESGKKEY 158
Query: 69 TLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGS 128
+LD + S+A + DG L S D ++N++D+ T+ + M P S
Sbjct: 159 SLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDS 218
Query: 129 AF------DSFLSSYNQQ 140
D ++ Y+ Q
Sbjct: 219 QLLVTASDDGYIKIYDVQ 236
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 57/125 (45%), Gaps = 5/125 (4%)
Query: 231 LSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDT 290
L L G+ I L F + Q L A++ +++YD+ + + L+GH+ VL +
Sbjct: 198 LLHTLEGHAMPIRSLTF-SPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAF 256
Query: 291 CALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDH 350
C + V+ S D SV++WD +R CV H V V ++ +VS D
Sbjct: 257 CPDDTH---FVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSK-IVSVGDDQ 312
Query: 351 TIKVW 355
I ++
Sbjct: 313 EIHIY 317
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 99/208 (47%), Gaps = 17/208 (8%)
Query: 292 ALSSGKILIVTGSKDNSVRLWDSE--SRCCVGV-GTGHMGAVGAVAFSKKLQNFLVSGSS 348
A + L+ + D +R+W +E S C V GH V VA+S N+L S S
Sbjct: 23 AWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSP-CGNYLASASF 81
Query: 349 DHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWR 408
D T +W + DD E L+ H ++ S+A AP+ +L+ T S+D++ VW
Sbjct: 82 DATTCIWKKN--QDDFECVTTLEG------HENEVKSVAWAPSGNLLATCSRDKSVWVWE 133
Query: 409 LPD---LVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIW--SISDGSCLKTFEGH 463
+ + V H + + V + P +++ +AS D T+K++ D C T EGH
Sbjct: 134 VDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGH 193
Query: 464 TSSVLRASFLTRGAQIVSCGADGLVKLW 491
S+V +F G ++ SC D V++W
Sbjct: 194 ESTVWSLAFDPSGQRLASCSDDRTVRIW 221
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 88/200 (44%), Gaps = 16/200 (8%)
Query: 342 FLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVA-AHGKDINSLAVAPNDSLVCTGSQ 400
L S D I++W +G S K+V++ H + + +A +P + + + S
Sbjct: 30 LLASCGGDRRIRIWGTEGDS--------WICKSVLSEGHQRTVRKVAWSPCGNYLASASF 81
Query: 401 DRTACVWR--LPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG---S 455
D T C+W+ D V T GH+ + SV ++P ++ T S DK++ +W + +
Sbjct: 82 DATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYE 141
Query: 456 CLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE--CIATYDKHEDKIWALA 513
C+ HT V + + S D VKL+ + C AT + HE +W+LA
Sbjct: 142 CVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLA 201
Query: 514 VGKKTEMFATGGSDALVNLW 533
+ A+ D V +W
Sbjct: 202 FDPSGQRLASCSDDRTVRIW 221
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 105/239 (43%), Gaps = 33/239 (13%)
Query: 271 SMSCSYVLA-GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLW--DSESRCCVGVGTGHM 327
S C VL+ GH V A S + + S D + +W + + CV GH
Sbjct: 49 SWICKSVLSEGHQRTVR---KVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHE 105
Query: 328 GAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLA 387
V +VA++ N L + S D ++ VW D + + +V+ +H +D+ +
Sbjct: 106 NEVKSVAWAPS-GNLLATCSRDKSVWVWEVD-------EEDEYECVSVLNSHTQDVKHVV 157
Query: 388 VAPNDSLVCTGSQDRTACVWRLP--DLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKT 445
P+ L+ + S D T ++R D V T GH+ +WS+ F P Q + + S D+T
Sbjct: 158 WHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRT 217
Query: 446 IKIW-------------SISDGS--CLKTFEG-HTSSVLRASFLT-RGAQIVSCGADGL 487
++IW S SD S C+ T G H+ ++ ++ GA +CG D +
Sbjct: 218 VRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAI 276
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 68/276 (24%), Positives = 107/276 (38%), Gaps = 43/276 (15%)
Query: 253 QYLAVATNIEQVQVY--DLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVR 310
YLA A+ ++ + C L GH V + A + L+ T S+D SV
Sbjct: 74 NYLASASFDATTCIWKKNQDDFECVTTLEGHENEV---KSVAWAPSGNLLATCSRDKSVW 130
Query: 311 LW--DSESRC-CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQP 367
+W D E CV V H V V + Q L S S D T+K++ E+
Sbjct: 131 VWEVDEEDEYECVSVLNSHTQDVKHVVWHPS-QELLASASYDDTVKLYR--------EEE 181
Query: 368 MNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRL---------------PDL 412
+ A + H + SLA P+ + + S DRT +WR P
Sbjct: 182 DDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSW 241
Query: 413 VSVVTFRG-HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLK--TF-------EG 462
+ T G H R I+ + + + + TA GD I+++ S + TF +
Sbjct: 242 KCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQA 301
Query: 463 HTSSVLRASFLTRGAQIV-SCGADGLVKLWTVRTGE 497
H+ V ++ + ++ SC DG V W + E
Sbjct: 302 HSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPE 337
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 85/222 (38%), Gaps = 16/222 (7%)
Query: 9 DRKVLVWDVDGG---FCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK 65
D+ V VW+VD C H V +++HP + LL S S D TV+++
Sbjct: 126 DKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPS--QELLASASYDDTVKLYREEEDD 183
Query: 66 --CVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCA 123
C ATL+ H S V S+A G L S D+ V +W R Y +P E A
Sbjct: 184 WVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW--RQY-----LPGNEQGVACSG 236
Query: 124 IPPGSAFDSFLSSYNQQTIKK-KRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTI 182
P LS ++ +TI L T +R++ D +Q + +T
Sbjct: 237 SDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTA 296
Query: 183 SFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPE 224
S+ P GLL +D + + + PE
Sbjct: 297 HLHQAHSQ-DVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPE 337
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 54/110 (49%), Gaps = 10/110 (9%)
Query: 7 GADRKVLVWDVDGG--FCTHYF-KGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLA 63
G DR++ +W +G C +GH+ V + + P + L S S DAT +W
Sbjct: 35 GGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGN--YLASASFDATTCIWKKNQ 92
Query: 64 K--KCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDL---RDYSC 108
+CV TL+ H + V S+A G+ L + RDK V +W++ +Y C
Sbjct: 93 DDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYEC 142
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 51/114 (44%), Gaps = 5/114 (4%)
Query: 425 IWSVEFSPVDQVVITASGDKTIKIWSISDGS--CLKTF-EGHTSSVLRASFLTRGAQIVS 481
W + ++P ++ + GD+ I+IW S C EGH +V + ++ G + S
Sbjct: 19 CWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLAS 78
Query: 482 CGADGLVKLWTVRTG--ECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 533
D +W EC+ T + HE+++ ++A + AT D V +W
Sbjct: 79 ASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVW 132
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 76.6 bits (187), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 62/231 (26%), Positives = 109/231 (47%), Gaps = 23/231 (9%)
Query: 321 GVGTGHMGAVGAV--AFSKKLQN---FLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAV 375
G+ GH V ++ FS+K L+SGS D T+ +W ++ + KA+
Sbjct: 15 GILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKL--YEEEQNGYFGIPHKAL 72
Query: 376 VAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQ 435
H ++ LA++ + + S D+T +W L + F GH+ ++SV FSP ++
Sbjct: 73 TG-HNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNR 131
Query: 436 VVITASGDKTIKIWSISDGSCLKTF---EGHTS--SVLRASFLTRGAQIV--------SC 482
+++A ++ IK+W+I G C + E H+ S +R S + + A V S
Sbjct: 132 QILSAGAEREIKLWNIL-GECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASV 190
Query: 483 GADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 533
G DG +K+W + T+ HE + L++ + ATGG D + +W
Sbjct: 191 GWDGRLKVWNTNF-QIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIW 240
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 89/201 (44%), Gaps = 27/201 (13%)
Query: 360 LSDDAEQPMNLKAKAVVAAHGKDINSLAVA------PNDSLVCTGSQDRTACVWRLPDLV 413
++D++ + + + ++ H + S+ + ++ +GS+D+T +W+L +
Sbjct: 1 MADNSSLDIQVVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEE 60
Query: 414 SVVTF-------RGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSS 466
F GH + + S + I++S DKT+++W + G+ K F GH S
Sbjct: 61 QNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSE 120
Query: 467 VLRASFLTRGAQIVSCGADGLVKLWTVRTGEC-IATYDKHEDKIW------------ALA 513
V +F QI+S GA+ +KLW + GEC ++ +K W A
Sbjct: 121 VYSVAFSPDNRQILSAGAEREIKLWNI-LGECKFSSAEKENHSDWVSCVRYSPIMKSANK 179
Query: 514 VGKKTEMFATGGSDALVNLWH 534
V FA+ G D + +W+
Sbjct: 180 VQPFAPYFASVGWDGRLKVWN 200
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/259 (21%), Positives = 111/259 (42%), Gaps = 29/259 (11%)
Query: 205 LLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQ- 263
L+ + D+ ++++ E + I K L G+N + DL +E A++++ ++
Sbjct: 42 LISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLAL--SQENCFAISSSWDKT 99
Query: 264 VQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWD--SESRCCVG 321
++++DL + + GH V + A S I++ + ++LW+ E +
Sbjct: 100 LRLWDLRTGTTYKRFVGHQSEVY---SVAFSPDNRQILSAGAEREIKLWNILGECKFSSA 156
Query: 322 VGTGHMGAVGAVAFS------KKLQNF---LVSGSSDHTIKVWSFDGLSDDAEQPMNLKA 372
H V V +S K+Q F S D +KVW+ N +
Sbjct: 157 EKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-----------TNFQI 205
Query: 373 KAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSP 432
+ AH ++N L+++PN + TG +D+ +W + +L I + F+P
Sbjct: 206 RYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNP 265
Query: 433 VDQVVITASGDKTIKIWSI 451
Q V + D+ +KI+++
Sbjct: 266 KLQWVAVGT-DQGVKIFNL 283
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 60/293 (20%), Positives = 127/293 (43%), Gaps = 46/293 (15%)
Query: 4 LLEGA-DRKVLVWDVDGGFCTHYF-------KGHKGVVSSILFHPDTDKSLLFSGSDDAT 55
L+ G+ D+ V++W + YF GH VS + + S S D T
Sbjct: 42 LISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLAL--SQENCFAISSSWDKT 99
Query: 56 VRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTY 115
+R+WDL H S V S+A + D ++SAG ++ + LW++ CK +
Sbjct: 100 LRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILG-ECKFSSAEK 158
Query: 116 E-MVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYE 174
E + V + + + S N K + +F +VG G +++WN + Y
Sbjct: 159 ENHSDWVSCV----RYSPIMKSAN------KVQPFAPYFASVGWDGRLKVWNTNFQIRYT 208
Query: 175 QKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEV--PEKKMELILS 232
K+ + ++ ++ P+ + + D++LL++ + + P+++ + +
Sbjct: 209 FKAHESNVNH-----------LSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGST 257
Query: 233 KRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIV 285
+ +N ++ Q++AV T+ + V++++L + S + V +E +
Sbjct: 258 INQIAFNPKL----------QWVAVGTD-QGVKIFNLMTQSKAPVCTIEAEPI 299
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/169 (20%), Positives = 65/169 (38%), Gaps = 59/169 (34%)
Query: 2 FALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDL 61
FA+ D+ + +WD+ G F GH+ V S+ F PD ++ +L +G+ + +++W++
Sbjct: 90 FAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPD-NRQILSAGA-EREIKLWNI 147
Query: 62 LAK---------------KCVA-------------------------------------- 68
L + CV
Sbjct: 148 LGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRY 207
Query: 69 TLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEM 117
T H S V ++I+ +G + + G+DK + +WD+ + LT P E
Sbjct: 208 TFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILN----LTYPQREF 252
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 76.3 bits (186), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 112/230 (48%), Gaps = 23/230 (10%)
Query: 278 LAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWD-SESRCCVGVG----TGHMGAVGA 332
+ H+++V + T ++ +IV+ S+D S+ LW ++ GV TGH V
Sbjct: 378 MRAHTDMVTAIATPIDNAD--IIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVED 435
Query: 333 VAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND 392
V S Q F +SGS D +++W + + V H KD+ S+A + ++
Sbjct: 436 VVLSSDGQ-FALSGSWDGELRLWDL---------AAGVSTRRFVG-HTKDVLSVAFSLDN 484
Query: 393 SLVCTGSQDRTACVWR-LPDLVSVVT--FRGHKRGIWSVEFSP--VDQVVITASGDKTIK 447
+ + S+DRT +W L + ++ GH+ + V FSP + +++AS DKT+K
Sbjct: 485 RQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVK 544
Query: 448 IWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE 497
+W++S+ T GHT V + G+ S G DG+V LW + G+
Sbjct: 545 VWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGK 594
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 100/219 (45%), Gaps = 12/219 (5%)
Query: 321 GVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHG 380
G H V A+A + +VS S D +I +W DD + A+ + H
Sbjct: 376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKL--TKDDKAYGV---AQRRLTGHS 430
Query: 381 KDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITA 440
+ + ++ + +GS D +W L VS F GH + + SV FS ++ +++A
Sbjct: 431 HFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSA 490
Query: 441 SGDKTIKIWSISDGSCLKTF----EGHTS--SVLRASFLTRGAQIVSCGADGLVKLWTVR 494
S D+TIK+W+ + G C T EGH S +R S T IVS D VK+W +
Sbjct: 491 SRDRTIKLWN-TLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLS 549
Query: 495 TGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 533
+ +T H + +AV + A+GG D +V LW
Sbjct: 550 NCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLW 588
Score = 69.3 bits (168), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 66/121 (54%), Gaps = 5/121 (4%)
Query: 9 DRKVLVWDVDGGFCTHYF----KGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK 64
DR + +W+ G C + +GH+ VS + F P+T + + S S D TV+VW+L
Sbjct: 493 DRTIKLWNTLGE-CKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNC 551
Query: 65 KCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAI 124
K +TL H V+++A++ DGS S G+D VV LWDL + ++ ++ A+C
Sbjct: 552 KLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFS 611
Query: 125 P 125
P
Sbjct: 612 P 612
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 98/226 (43%), Gaps = 27/226 (11%)
Query: 278 LAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSK 337
L GHS V + LSS ++GS D +RLWD + GH V +VAFS
Sbjct: 426 LTGHSHFV---EDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFS- 481
Query: 338 KLQNF-LVSGSSDHTIKVWSFDG-----LSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN 391
L N +VS S D TIK+W+ G +S+ E H ++ + +PN
Sbjct: 482 -LDNRQIVSASRDRTIKLWNTLGECKYTISEGGE------------GHRDWVSCVRFSPN 528
Query: 392 --DSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIW 449
+ + S D+T VW L + T GH + +V SP + + D + +W
Sbjct: 529 TLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLW 588
Query: 450 SISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRT 495
+++G L + E + SV+ A + + + +K+W + +
Sbjct: 589 DLAEGKKLYSLEAN--SVIHALCFSPNRYWLCAATEHGIKIWDLES 632
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 63/135 (46%), Gaps = 7/135 (5%)
Query: 373 KAVVAAHGKDINSLAVA-PNDSLVCTGSQDRTACVWRLP--DLVSVVTFR---GHKRGIW 426
K + AH + ++A N ++ + S+D++ +W+L D V R GH +
Sbjct: 375 KGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVE 434
Query: 427 SVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADG 486
V S Q ++ S D +++W ++ G + F GHT VL +F QIVS D
Sbjct: 435 DVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDR 494
Query: 487 LVKLWTVRTGECIAT 501
+KLW GEC T
Sbjct: 495 TIKLWNT-LGECKYT 508
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 8/109 (7%)
Query: 9 DRKVLVW-----DVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLA 63
D+ +++W D G GH V ++ +D SGS D +R+WDL A
Sbjct: 404 DKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLS--SDGQFALSGSWDGELRLWDLAA 461
Query: 64 KKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTV 112
H V S+A + D ++SA RD+ + LW+ CK T+
Sbjct: 462 GVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLG-ECKYTI 509
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 77/317 (24%), Positives = 138/317 (43%), Gaps = 55/317 (17%)
Query: 68 ATLDKHFSRVTSMAITSDGSTLI-SAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPP 126
T+ H VT++A D + +I SA RDK + LW KLT A +
Sbjct: 376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILW-------KLTKDDKAYGVAQRRLTG 428
Query: 127 GSAF--DSFLSSYNQQTIKKKRRSLEIHFITVGE-RGIVRMWN---ADSACLYEQKSSDV 180
S F D LSS Q F G G +R+W+ S + + DV
Sbjct: 429 HSHFVEDVVLSSDGQ-------------FALSGSWDGELRLWDLAAGVSTRRFVGHTKDV 475
Query: 181 -TISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYN 239
+++F +D N+ ++ + D+ + L+ T+ + + +S+ G+
Sbjct: 476 LSVAFSLD--------------NRQIVSASRDRTIKLWNTL----GECKYTISEGGEGHR 517
Query: 240 EEILDLKFLGEEEQYLAVATNIEQ-VQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKI 298
+ + ++F Q V+ + ++ V+V++LS+ LAGH+ V T A+S
Sbjct: 518 DWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYV---STVAVSPDGS 574
Query: 299 LIVTGSKDNSVRLWD-SESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSF 357
L +G KD V LWD +E + + + + A+ FS + + +++H IK+W
Sbjct: 575 LCASGGKDGVVLLWDLAEGKKLYSLEANSV--IHALCFSP--NRYWLCAATEHGIKIWDL 630
Query: 358 DGLSDDAEQPMNLKAKA 374
+ S + ++LKA+A
Sbjct: 631 ESKSIVEDLKVDLKAEA 647
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 50/119 (42%), Gaps = 23/119 (19%)
Query: 7 GADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKC 66
G D VL+WD+ G + + + V+ ++ F P+ + + +++WDL +K
Sbjct: 580 GKDGVVLLWDLAEGKKLYSLEANS-VIHALCFSPN---RYWLCAATEHGIKIWDLESKSI 635
Query: 67 V-------------------ATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDY 106
V A + TS+ ++DGSTL S D V+ +W + Y
Sbjct: 636 VEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIGRY 694
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 75.9 bits (185), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 69/276 (25%), Positives = 115/276 (41%), Gaps = 12/276 (4%)
Query: 262 EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVG 321
E+V+ M L GH VLC+D C K IV+ S+D V +WDS +
Sbjct: 44 ERVEALGQFVMKTRRTLKGHGNKVLCMDWC---KDKRRIVSSSQDGKVIVWDSFTTNKEH 100
Query: 322 VGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGK 381
T V A A++ + G D+ V+ L+ D + M K K+V A H
Sbjct: 101 AVTMPCTWVMACAYAPS-GCAIACGGLDNKCSVYP---LTFDKNENMAAKKKSV-AMHTN 155
Query: 382 DINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVD--QVVIT 439
+++ + +D + T S D T +W + + +F GH + ++ +P + ++
Sbjct: 156 YLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVS 215
Query: 440 ASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECI 499
DK +W + G C++ FE H S V + G S D +L+ +R +
Sbjct: 216 GGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREV 275
Query: 500 ATYDKHEDKIWALAV--GKKTEMFATGGSDALVNLW 533
A Y K A +V + G +D +N+W
Sbjct: 276 AIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVW 311
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 63/127 (49%), Gaps = 5/127 (3%)
Query: 7 GADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKC 66
G D+K +VWD+ G C F+ H+ V+S+ ++P D SGSDDAT R++DL A +
Sbjct: 217 GCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDA--FASGSDDATCRLYDLRADRE 274
Query: 67 VATLDKH--FSRVTSMAITSDGSTLISAGRDKVVNLWD-LRDYSCKLTVPTYEMVEAVCA 123
VA K +S+ + G L + D +N+WD L+ + V +
Sbjct: 275 VAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRV 334
Query: 124 IPPGSAF 130
P G+AF
Sbjct: 335 SPDGTAF 341
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/256 (23%), Positives = 97/256 (37%), Gaps = 12/256 (4%)
Query: 195 AATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQY 254
A PS + C D + +Y +K + K+ V + L +
Sbjct: 111 ACAYAPSGCAIACGGLDNKCSVYPLT--FDKNENMAAKKKSVAMHTNYLSACSFTNSDMQ 168
Query: 255 LAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDS 314
+ A+ ++D+ S GH VLCLD +G V+G D +WD
Sbjct: 169 ILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTF-VSGGCDKKAMVWDM 227
Query: 315 ESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKA 374
S CV H V +V + F SGS D T +++ L D E + K
Sbjct: 228 RSGQCVQAFETHESDVNSVRYYPSGDAF-ASGSDDATCRLYD---LRADREVAIYSKESI 283
Query: 375 VVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVD 434
+ A +S+ + + L+ G D T VW + V GH+ + ++ SP
Sbjct: 284 IFGA-----SSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDG 338
Query: 435 QVVITASGDKTIKIWS 450
+ S D T+++W+
Sbjct: 339 TAFCSGSWDHTLRVWA 354
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 87/213 (40%), Gaps = 25/213 (11%)
Query: 288 LDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFS-KKLQNFLVSG 346
L C+ ++ + I+T S D + LWD ES + GH V + + + N VSG
Sbjct: 157 LSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSG 216
Query: 347 SSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAA---HGKDINSLAVAPNDSLVCTGSQDRT 403
D VW ++++ V A H D+NS+ P+ +GS D T
Sbjct: 217 GCDKKAMVW-------------DMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDAT 263
Query: 404 ACVWRLPDL-----VSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLK 458
RL DL V++ + G SV+FS +++ D TI +W + GS +
Sbjct: 264 C---RLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVS 320
Query: 459 TFEGHTSSVLRASFLTRGAQIVSCGADGLVKLW 491
GH + V G S D +++W
Sbjct: 321 ILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 41/104 (39%)
Query: 1 MFALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWD 60
M L D +WDV+ G F GH V + P + SG D VWD
Sbjct: 167 MQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWD 226
Query: 61 LLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLR 104
+ + +CV + H S V S+ G S D L+DLR
Sbjct: 227 MRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLR 270
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 53/107 (49%), Gaps = 5/107 (4%)
Query: 29 HKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVT--SMAITSDG 86
H +S+ F ++D +L + S D T +WD+ + + + + H + V +A + G
Sbjct: 153 HTNYLSACSF-TNSDMQIL-TASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETG 210
Query: 87 STLISAGRDKVVNLWDLRDYSCKLTVPTYEM-VEAVCAIPPGSAFDS 132
+T +S G DK +WD+R C T+E V +V P G AF S
Sbjct: 211 NTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFAS 257
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 9 DRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVW 59
D + VWDV G GH+ VS++ PD + SGS D T+RVW
Sbjct: 305 DYTINVWDVLKGSRVSILFGHENRVSTLRVSPD--GTAFCSGSWDHTLRVW 353
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/264 (25%), Positives = 112/264 (42%), Gaps = 40/264 (15%)
Query: 299 LIVTGSKDNSVRLWDSESRC-------CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHT 351
L+ GS D++V +W E + + GH V VA+S +L + S D +
Sbjct: 72 LLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSND-GYYLATCSRDKS 130
Query: 352 IKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRL-- 409
+ +W D E + +V+ H +D+ + P+++L+ + S D T +W+
Sbjct: 131 VWIWETD------ESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYD 184
Query: 410 PDLVSVVTFRGHKRGIWSVEFSPVDQVVITASG--DKTIKIWSI--------SDGSCLKT 459
D V GH+ +WS +F + V SG D T+++W + C
Sbjct: 185 DDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAI 244
Query: 460 F-EGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE---------CIATYDKHEDKI 509
+ H V ++ G I S GADG++ ++ GE C Y+ + K
Sbjct: 245 LPDVHKRQVYNVAWGFNGL-IASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKW 303
Query: 510 WALAVGKKTEMFATGGSDALVNLW 533
L + KT + ATGG D +VN W
Sbjct: 304 --LELNGKT-ILATGGDDGIVNFW 324
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 88/209 (42%), Gaps = 21/209 (10%)
Query: 340 QNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGS 399
Q L +GS+D IK+ S DD L AH K I S+A P+ SL+ GS
Sbjct: 24 QGILATGSTDRKIKLVSVK--YDD----FTLIDVLDETAHKKAIRSVAWRPHTSLLAAGS 77
Query: 400 QDRTACVW-------RLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSIS 452
D T +W R ++ + GH+ + V +S + T S DK++ IW
Sbjct: 78 FDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETD 137
Query: 453 DGS----CLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTG--ECIATYDKHE 506
+ C+ + H+ V + A + S D V++W EC+A + HE
Sbjct: 138 ESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHE 197
Query: 507 DKIWALAVGKKTEMF--ATGGSDALVNLW 533
+W+ K +F +G D+ V +W
Sbjct: 198 GTVWSSDFDKTEGVFRLCSGSDDSTVRVW 226
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 66/290 (22%), Positives = 122/290 (42%), Gaps = 19/290 (6%)
Query: 176 KSSDVTISFEMDDS--KRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSK 233
K D T+ +D++ K+ + P L + D + ++ E ++ E+ L
Sbjct: 42 KYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLA 101
Query: 234 RLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDL----SSMSCSYVLAGHSEIVLCLD 289
+ G+ E+ + + + YLA + + V +++ C VL HS+ V
Sbjct: 102 IIEGHENEVKGVAW-SNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDV---K 157
Query: 290 TCALSSGKILIVTGSKDNSVRLWDS--ESRCCVGVGTGHMGAVGAVAFSKKLQNF-LVSG 346
+ L+ + S D++VR+W + CV V GH G V + F K F L SG
Sbjct: 158 HVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSG 217
Query: 347 SSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACV 406
S D T++VW + G +D +Q +A + H + + ++A N + G+ A
Sbjct: 218 SDDSTVRVWKYMGDDEDDQQEWVCEA-ILPDVHKRQVYNVAWGFNGLIASVGADGVLAVY 276
Query: 407 WRLPDLVSVVTFRGHKRGIWS---VEFSPVDQVVITASG--DKTIKIWSI 451
+ V R G++ V++ ++ I A+G D + WS+
Sbjct: 277 EEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSL 326
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 67/157 (42%), Gaps = 15/157 (9%)
Query: 394 LVCTGSQDR----TACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIW 449
++ TGS DR + + L+ V+ HK+ I SV + P ++ S D T+ IW
Sbjct: 26 ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIW 85
Query: 450 SISDGS-------CLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLW-TVRTGE---C 498
+ + + L EGH + V ++ G + +C D V +W T +GE C
Sbjct: 86 AKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYEC 145
Query: 499 IATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHD 535
I+ +H + + + A+ D V +W D
Sbjct: 146 ISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKD 182
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 13/91 (14%)
Query: 29 HKGVVSSILFHPDTDKSLLFSGSDDATVRVW-------DLLAKKCVATLDKHFSRVTSMA 81
HK + S+ + P T SLL +GS D+TV +W +A ++ H + V +A
Sbjct: 57 HKKAIRSVAWRPHT--SLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVA 114
Query: 82 ITSDGSTLISAGRDKVVNLWDL----RDYSC 108
++DG L + RDK V +W+ +Y C
Sbjct: 115 WSNDGYYLATCSRDKSVWIWETDESGEEYEC 145
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 80/204 (39%), Gaps = 44/204 (21%)
Query: 9 DRKVLVWDVDGGF----CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK 64
D+ V +W+ D C + H V +++HP ++LL S S D TVR+W
Sbjct: 128 DKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPS--EALLASSSYDDTVRIWKDYDD 185
Query: 65 --KCVATLDKHFSRVTSMAI--TSDGSTLISAGRDKVVNLW--------DLRDYSCKLTV 112
+CVA L+ H V S T L S D V +W D +++ C+ +
Sbjct: 186 DWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAIL 245
Query: 113 P------TYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKK---RRSL-----EIHFI---- 154
P Y + + D L+ Y + + K +R+L EI+ +
Sbjct: 246 PDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLE 305
Query: 155 --------TVGERGIVRMWNADSA 170
T G+ GIV W+ + A
Sbjct: 306 LNGKTILATGGDDGIVNFWSLEKA 329
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 52/89 (58%)
Query: 419 RGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQ 478
+ H I ++F P + +I++S D +KIWS+ DGS +T GH ++V + + RG
Sbjct: 133 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 192
Query: 479 IVSCGADGLVKLWTVRTGECIATYDKHED 507
++S DG ++LW TG I T+++ E+
Sbjct: 193 VLSASLDGTIRLWECGTGTTIHTFNRKEN 221
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
Query: 368 MNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWS 427
NL+ + + AH +I L P+ + + SQD +W + D + T GH+ +
Sbjct: 125 FNLQ-REIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTD 183
Query: 428 VEFSPVDQVVITASGDKTIKIWSISDGSCLKTF 460
+ + V++AS D TI++W G+ + TF
Sbjct: 184 IAIIDRGRNVLSASLDGTIRLWECGTGTTIHTF 216
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/73 (21%), Positives = 31/73 (42%)
Query: 461 EGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEM 520
+ H S + + F G ++S D +K+W+V+ G T H + +A+ +
Sbjct: 133 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 192
Query: 521 FATGGSDALVNLW 533
+ D + LW
Sbjct: 193 VLSASLDGTIRLW 205
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 52/89 (58%)
Query: 419 RGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQ 478
+ H I ++F P + +I++S D +KIWS+ DGS +T GH ++V + + RG
Sbjct: 136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 195
Query: 479 IVSCGADGLVKLWTVRTGECIATYDKHED 507
++S DG ++LW TG I T+++ E+
Sbjct: 196 VLSASLDGTIRLWECGTGTTIHTFNRKEN 224
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
Query: 368 MNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWS 427
NL+ + + AH +I L P+ + + SQD +W + D + T GH+ +
Sbjct: 128 FNLQ-REIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTD 186
Query: 428 VEFSPVDQVVITASGDKTIKIWSISDGSCLKTF 460
+ + V++AS D TI++W G+ + TF
Sbjct: 187 IAIIDRGRNVLSASLDGTIRLWECGTGTTIHTF 219
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/73 (21%), Positives = 31/73 (42%)
Query: 461 EGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEM 520
+ H S + + F G ++S D +K+W+V+ G T H + +A+ +
Sbjct: 136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 195
Query: 521 FATGGSDALVNLW 533
+ D + LW
Sbjct: 196 VLSASLDGTIRLW 208
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 66.6 bits (161), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 62/231 (26%), Positives = 100/231 (43%), Gaps = 27/231 (11%)
Query: 318 CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVA 377
CC + GH G V ++ ++ + +N++VS S D + VW + L+ + L V+
Sbjct: 58 CCRTL-QGHSGKVYSLDWTPE-KNWIVSASQDGRLIVW--NALTSQKTHAIKLHCPWVME 113
Query: 378 AHGKDINSLAVAPNDSLVCTGSQDRTACVWRLP-------DLVSVVTFRGHKRGIWSVEF 430
A APN V G D ++ L ++ GHK S ++
Sbjct: 114 C--------AFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQY 165
Query: 431 SPVDQV-VITASGDKTIKIWSISDGSCLKTF-----EGHTSSVLRASFLTRGAQI-VSCG 483
P + +IT SGD+T +W ++ G + F GHT+ VL S + A + +S
Sbjct: 166 VPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGS 225
Query: 484 ADGLVKLWTVR-TGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 533
D V+LW +R T + TY HE I ++ + F TG D L+
Sbjct: 226 CDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLF 276
Score = 65.9 bits (159), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 58/250 (23%), Positives = 113/250 (45%), Gaps = 15/250 (6%)
Query: 267 YDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGH 326
++ + + C L GHS V LD + K IV+ S+D + +W++ + H
Sbjct: 51 FNPTDLVCCRTLQGHSGKVYSLD---WTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLH 107
Query: 327 MGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSL 386
V AF+ Q+ + G D +++ LS A++ N+ V+ H +S
Sbjct: 108 CPWVMECAFAPNGQS-VACGGLDSACSIFN---LSSQADRDGNMPVSRVLTGHKGYASSC 163
Query: 387 AVAPN-DSLVCTGSQDRTACVWRLPDLVSVVTF-----RGHKRGIWSVEFSPVD-QVVIT 439
P+ ++ + TGS D+T +W + + F GH + S+ + ++ + I+
Sbjct: 164 QYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFIS 223
Query: 440 ASGDKTIKIWSISDGS-CLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGEC 498
S D T+++W + S ++T+ GH + F G + + DG +L+ +RTG
Sbjct: 224 GSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQ 283
Query: 499 IATYDKHEDK 508
+ Y++ D+
Sbjct: 284 LQVYNREPDR 293
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 67/326 (20%), Positives = 136/326 (41%), Gaps = 29/326 (8%)
Query: 228 ELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLC 287
+L+ + L G++ ++ L + E+ ++ A+ ++ V++ + ++ + H V+
Sbjct: 55 DLVCCRTLQGHSGKVYSLDWT-PEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVM- 112
Query: 288 LDTCALSSGKILIVTGSKDNSVRLWDSESRC-------CVGVGTGHMGAVGAVAFSKKLQ 340
CA + + G D++ +++ S+ V TGH G + + +
Sbjct: 113 --ECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQE 170
Query: 341 NFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAV-APNDSLVCTGS 399
L++GS D T +W Q +++ + H D+ SL++ + N ++ +GS
Sbjct: 171 TRLITGSGDQTCVLWDVT-----TGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGS 225
Query: 400 QDRTACVWRLPDLVSVV-TFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLK 458
D T +W L V T+ GH+ I SV+F P Q T S D T +++ + G L+
Sbjct: 226 CDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQ 285
Query: 459 TF-------EGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATY----DKHED 507
+ + V +F G + + ++G +W E + + HE
Sbjct: 286 VYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEG 345
Query: 508 KIWALAVGKKTEMFATGGSDALVNLW 533
+I L + TG D + +W
Sbjct: 346 RISCLGLSSDGSALCTGSWDKNLKIW 371
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 64/275 (23%), Positives = 121/275 (44%), Gaps = 40/275 (14%)
Query: 200 PSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVAT 259
P+ Q + C D ++ ++ + +S+ L G+ +++ ++E L +
Sbjct: 118 PNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGS 177
Query: 260 NIEQVQVYDLS-----SMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDS 314
+ ++D++ S+ S +GH+ VL L +L++ + ++GS D +VRLWD
Sbjct: 178 GDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNAN--MFISGSCDTTVRLWDL 235
Query: 315 E--SRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSD-----------HTIKVWSFDGLS 361
SR V GH G + +V F Q F +GS D H ++V++ +
Sbjct: 236 RITSRA-VRTYHGHEGDINSVKFFPDGQRF-GTGSDDGTCRLFDMRTGHQLQVYNREPDR 293
Query: 362 DDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWR--LPDLV-SVVTF 418
+D E P+ + S+A + + L+ G + VW L ++V ++ T
Sbjct: 294 NDNELPI--------------VTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTL 339
Query: 419 RG-HKRGIWSVEFSPVDQVVITASGDKTIKIWSIS 452
+ H+ I + S + T S DK +KIW+ S
Sbjct: 340 QNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFS 374
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 62/141 (43%), Gaps = 21/141 (14%)
Query: 1 MFALLEGADRKVLVWDVDGGF-CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVW 59
+F L ADR DG + GHKG SS + PD + L+ +GS D T +W
Sbjct: 134 IFNLSSQADR-------DGNMPVSRVLTGHKGYASSCQYVPDQETRLI-TGSGDQTCVLW 185
Query: 60 DLLAKKCVATLDKHF-----SRVTSMAITS-DGSTLISAGRDKVVNLWDLRDYSCKLTVP 113
D+ + ++ F + V S++I S + + IS D V LWDLR S V
Sbjct: 186 DVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITS--RAVR 243
Query: 114 TYEM----VEAVCAIPPGSAF 130
TY + +V P G F
Sbjct: 244 TYHGHEGDINSVKFFPDGQRF 264
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 7/103 (6%)
Query: 8 ADRKVLVWDVDGG-----FCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDL- 61
D+ ++WDV G F + + GH V S+ + + ++ SGS D TVR+WDL
Sbjct: 178 GDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSIN-SLNANMFISGSCDTTVRLWDLR 236
Query: 62 LAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLR 104
+ + V T H + S+ DG + D L+D+R
Sbjct: 237 ITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMR 279
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 399 SQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLK 458
+Q RTA + DLV T +GH ++S++++P +++AS D + +W+
Sbjct: 43 AQGRTAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTH 102
Query: 459 TFEGHTSSVLRASFLTRGAQIVSCGA 484
+ H V+ +F G Q V+CG
Sbjct: 103 AIKLHCPWVMECAFAPNG-QSVACGG 127
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 32 VVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATL----DKHFSRVTSMAITSDGS 87
+V+S+ F LLF+G + VWD L + V L + H R++ + ++SDGS
Sbjct: 300 IVTSVAF--SISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGS 357
Query: 88 TLISAGRDKVVNLW 101
L + DK + +W
Sbjct: 358 ALCTGSWDKNLKIW 371
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 34/82 (41%)
Query: 456 CLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVG 515
C +T +GH+ V + IVS DG + +W T + H + A
Sbjct: 58 CCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFA 117
Query: 516 KKTEMFATGGSDALVNLWHDST 537
+ A GG D+ ++++ S+
Sbjct: 118 PNGQSVACGGLDSACSIFNLSS 139
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 88/213 (41%), Gaps = 16/213 (7%)
Query: 325 GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDIN 384
GH+ + A+ + LVS S D + +W D + + + L++ V+
Sbjct: 53 GHLAKIYAMHWGTD-SRLLVSASQDGKLIIW--DSYTTNKVHAIPLRSSWVM-------- 101
Query: 385 SLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVT----FRGHKRGIWSVEFSPVDQVVITA 440
+ A AP+ + V G D ++ L V GH + F +Q+V T+
Sbjct: 102 TCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIV-TS 160
Query: 441 SGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIA 500
SGD T +W I G TF GHT V+ S VS D KLW VR G C
Sbjct: 161 SGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQ 220
Query: 501 TYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 533
T+ HE I A+ FATG DA L+
Sbjct: 221 TFTGHESDINAICFFPNGNAFATGSDDATCRLF 253
Score = 65.9 bits (159), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 70/331 (21%), Positives = 138/331 (41%), Gaps = 22/331 (6%)
Query: 210 ADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDL 269
AD L T P ++++ + L G+ +I + + G + + L A+ ++ ++D
Sbjct: 26 ADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHW-GTDSRLLVSASQDGKLIIWDS 84
Query: 270 SSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR-CCVGVG---TG 325
+ + + + S V+ TCA + + G DN +++ ++R V V G
Sbjct: 85 YTTNKVHAIPLRSSWVM---TCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAG 141
Query: 326 HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINS 385
H G + F N +V+ S D T +W + + H D+ S
Sbjct: 142 HTGYLSCCRFLD--DNQIVTSSGDTTCALWDIE----------TGQQTTTFTGHTGDVMS 189
Query: 386 LAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKT 445
L++AP+ L +G+ D +A +W + + + TF GH+ I ++ F P T S D T
Sbjct: 190 LSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT 249
Query: 446 IKIWSISDGSCLKTF--EGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD 503
+++ + L T+ + + SF G +++ D +W +
Sbjct: 250 CRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA 309
Query: 504 KHEDKIWALAVGKKTEMFATGGSDALVNLWH 534
H++++ L V ATG D+ + +W+
Sbjct: 310 GHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 49/106 (46%), Gaps = 4/106 (3%)
Query: 26 FKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSD 85
GH G +S F D + + + S D T +WD+ + T H V S+++ D
Sbjct: 139 LAGHTGYLSCCRF---LDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPD 195
Query: 86 GSTLISAGRDKVVNLWDLRDYSCKLTVPTYEM-VEAVCAIPPGSAF 130
+S D LWD+R+ C+ T +E + A+C P G+AF
Sbjct: 196 TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAF 241
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 5/117 (4%)
Query: 8 ADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCV 67
D +WD++ G T F GH G V S+ PDT L SG+ DA+ ++WD+ C
Sbjct: 162 GDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT--RLFVSGACDASAKLWDVREGMCR 219
Query: 68 ATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAI 124
T H S + ++ +G+ + D L+DLR + TY +C I
Sbjct: 220 QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR---ADQELMTYSHDNIICGI 273
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/136 (22%), Positives = 47/136 (34%), Gaps = 42/136 (30%)
Query: 9 DRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDK------------------------ 44
D +WDV G C F GH+ +++I F P+ +
Sbjct: 205 DASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY 264
Query: 45 ------------------SLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDG 86
LL +G DD VWD L L H +RV+ + +T DG
Sbjct: 265 SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDG 324
Query: 87 STLISAGRDKVVNLWD 102
+ + D + +W+
Sbjct: 325 MAVATGSWDSFLKIWN 340
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 57/303 (18%), Positives = 117/303 (38%), Gaps = 27/303 (8%)
Query: 69 TLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGS 128
TL H +++ +M +D L+SA +D + +WD + +P CA P
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 129 AF------DSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQ------K 176
+ D+ S YN +K + ++ + G G + S C +
Sbjct: 110 NYVACGGLDNICSIYN---LKTREGNVRVSRELAGHTGYL------SCCRFLDDNQIVTS 160
Query: 177 SSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMEL---ILSK 233
S D T + ++ + T T + L + D +L + + K ++ + +
Sbjct: 161 SGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQ 220
Query: 234 RLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCAL 293
G+ +I + F + A ++ +++DL + + H I+ + + +
Sbjct: 221 TFTGHESDINAICFFPNGNAF-ATGSDDATCRLFDLRADQ-ELMTYSHDNIICGITSVSF 278
Query: 294 SSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIK 353
S L++ G D + +WD+ GV GH V + + + +GS D +K
Sbjct: 279 SKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGM-AVATGSWDSFLK 337
Query: 354 VWS 356
+W+
Sbjct: 338 IWN 340
Score = 33.1 bits (74), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Query: 26 FKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSD 85
+GH + ++ H TD LL S S D + +WD V + S V + A
Sbjct: 51 LRGHLAKIYAM--HWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
Query: 86 GSTLISAGRDKVVNLWDLR 104
G+ + G D + ++++L+
Sbjct: 109 GNYVACGGLDNICSIYNLK 127
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 88/213 (41%), Gaps = 16/213 (7%)
Query: 325 GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDIN 384
GH+ + A+ + LVS S D + +W D + + + L++ V+
Sbjct: 53 GHLAKIYAMHWGTD-SRLLVSASQDGKLIIW--DSYTTNKVHAIPLRSSWVM-------- 101
Query: 385 SLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVT----FRGHKRGIWSVEFSPVDQVVITA 440
+ A AP+ + V G D ++ L V GH + F +Q+V T+
Sbjct: 102 TCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIV-TS 160
Query: 441 SGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIA 500
SGD T +W I G TF GHT V+ S VS D KLW VR G C
Sbjct: 161 SGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQ 220
Query: 501 TYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 533
T+ HE I A+ FATG DA L+
Sbjct: 221 TFTGHESDINAICFFPNGNAFATGSDDATCRLF 253
Score = 65.9 bits (159), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 70/331 (21%), Positives = 138/331 (41%), Gaps = 22/331 (6%)
Query: 210 ADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDL 269
AD L T P ++++ + L G+ +I + + G + + L A+ ++ ++D
Sbjct: 26 ADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHW-GTDSRLLVSASQDGKLIIWDS 84
Query: 270 SSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR-CCVGVG---TG 325
+ + + + S V+ TCA + + G DN +++ ++R V V G
Sbjct: 85 YTTNKVHAIPLRSSWVM---TCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAG 141
Query: 326 HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINS 385
H G + F N +V+ S D T +W + + H D+ S
Sbjct: 142 HTGYLSCCRFLD--DNQIVTSSGDTTCALWDIE----------TGQQTTTFTGHTGDVMS 189
Query: 386 LAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKT 445
L++AP+ L +G+ D +A +W + + + TF GH+ I ++ F P T S D T
Sbjct: 190 LSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT 249
Query: 446 IKIWSISDGSCLKTF--EGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD 503
+++ + L T+ + + SF G +++ D +W +
Sbjct: 250 CRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA 309
Query: 504 KHEDKIWALAVGKKTEMFATGGSDALVNLWH 534
H++++ L V ATG D+ + +W+
Sbjct: 310 GHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 49/106 (46%), Gaps = 4/106 (3%)
Query: 26 FKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSD 85
GH G +S F D + + + S D T +WD+ + T H V S+++ D
Sbjct: 139 LAGHTGYLSCCRF---LDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPD 195
Query: 86 GSTLISAGRDKVVNLWDLRDYSCKLTVPTYEM-VEAVCAIPPGSAF 130
+S D LWD+R+ C+ T +E + A+C P G+AF
Sbjct: 196 TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAF 241
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 5/117 (4%)
Query: 8 ADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCV 67
D +WD++ G T F GH G V S+ PDT L SG+ DA+ ++WD+ C
Sbjct: 162 GDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT--RLFVSGACDASAKLWDVREGMCR 219
Query: 68 ATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAI 124
T H S + ++ +G+ + D L+DLR + TY +C I
Sbjct: 220 QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR---ADQELMTYSHDNIICGI 273
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/136 (22%), Positives = 47/136 (34%), Gaps = 42/136 (30%)
Query: 9 DRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDK------------------------ 44
D +WDV G C F GH+ +++I F P+ +
Sbjct: 205 DASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY 264
Query: 45 ------------------SLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDG 86
LL +G DD VWD L L H +RV+ + +T DG
Sbjct: 265 SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDG 324
Query: 87 STLISAGRDKVVNLWD 102
+ + D + +W+
Sbjct: 325 MAVATGSWDSFLKIWN 340
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 57/303 (18%), Positives = 117/303 (38%), Gaps = 27/303 (8%)
Query: 69 TLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGS 128
TL H +++ +M +D L+SA +D + +WD + +P CA P
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 129 AF------DSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQ------K 176
+ D+ S YN +K + ++ + G G + S C +
Sbjct: 110 NYVACGGLDNICSIYN---LKTREGNVRVSRELAGHTGYL------SCCRFLDDNQIVTS 160
Query: 177 SSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMEL---ILSK 233
S D T + ++ + T T + L + D +L + + K ++ + +
Sbjct: 161 SGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQ 220
Query: 234 RLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCAL 293
G+ +I + F + A ++ +++DL + + H I+ + + +
Sbjct: 221 TFTGHESDINAICFFPNGNAF-ATGSDDATCRLFDLRADQ-ELMTYSHDNIICGITSVSF 278
Query: 294 SSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIK 353
S L++ G D + +WD+ GV GH V + + + +GS D +K
Sbjct: 279 SKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGM-AVATGSWDSFLK 337
Query: 354 VWS 356
+W+
Sbjct: 338 IWN 340
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Query: 26 FKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSD 85
+GH + ++ H TD LL S S D + +WD V + S V + A
Sbjct: 51 LRGHLAKIYAM--HWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
Query: 86 GSTLISAGRDKVVNLWDLR 104
G+ + G D + ++++L+
Sbjct: 109 GNYVACGGLDNICSIYNLK 127
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 66.2 bits (160), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 88/213 (41%), Gaps = 16/213 (7%)
Query: 325 GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDIN 384
GH+ + A+ + LVS S D + +W D + + + L++ V+
Sbjct: 64 GHLAKIYAMHWGTD-SRLLVSASQDGKLIIW--DSYTTNKVHAIPLRSSWVM-------- 112
Query: 385 SLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVT----FRGHKRGIWSVEFSPVDQVVITA 440
+ A AP+ + V G D ++ L V GH + F +Q+V T+
Sbjct: 113 TCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIV-TS 171
Query: 441 SGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIA 500
SGD T +W I G TF GHT V+ S VS D KLW VR G C
Sbjct: 172 SGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQ 231
Query: 501 TYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 533
T+ HE I A+ FATG DA L+
Sbjct: 232 TFTGHESDINAICFFPNGNAFATGSDDATCRLF 264
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 70/331 (21%), Positives = 138/331 (41%), Gaps = 22/331 (6%)
Query: 210 ADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDL 269
AD L T P ++++ + L G+ +I + + G + + L A+ ++ ++D
Sbjct: 37 ADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHW-GTDSRLLVSASQDGKLIIWDS 95
Query: 270 SSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR-CCVGVG---TG 325
+ + + + S V+ TCA + + G DN +++ ++R V V G
Sbjct: 96 YTTNKVHAIPLRSSWVM---TCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAG 152
Query: 326 HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINS 385
H G + F N +V+ S D T +W + + H D+ S
Sbjct: 153 HTGYLSCCRFLD--DNQIVTSSGDTTCALWDIE----------TGQQTTTFTGHTGDVMS 200
Query: 386 LAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKT 445
L++AP+ L +G+ D +A +W + + + TF GH+ I ++ F P T S D T
Sbjct: 201 LSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT 260
Query: 446 IKIWSISDGSCLKTF--EGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD 503
+++ + L T+ + + SF G +++ D +W +
Sbjct: 261 CRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA 320
Query: 504 KHEDKIWALAVGKKTEMFATGGSDALVNLWH 534
H++++ L V ATG D+ + +W+
Sbjct: 321 GHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 351
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 49/106 (46%), Gaps = 4/106 (3%)
Query: 26 FKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSD 85
GH G +S F D + + + S D T +WD+ + T H V S+++ D
Sbjct: 150 LAGHTGYLSCCRF---LDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPD 206
Query: 86 GSTLISAGRDKVVNLWDLRDYSCKLTVPTYEM-VEAVCAIPPGSAF 130
+S D LWD+R+ C+ T +E + A+C P G+AF
Sbjct: 207 TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAF 252
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 5/117 (4%)
Query: 8 ADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCV 67
D +WD++ G T F GH G V S+ PDT L SG+ DA+ ++WD+ C
Sbjct: 173 GDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT--RLFVSGACDASAKLWDVREGMCR 230
Query: 68 ATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAI 124
T H S + ++ +G+ + D L+DLR + TY +C I
Sbjct: 231 QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR---ADQELMTYSHDNIICGI 284
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/136 (22%), Positives = 47/136 (34%), Gaps = 42/136 (30%)
Query: 9 DRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDK------------------------ 44
D +WDV G C F GH+ +++I F P+ +
Sbjct: 216 DASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY 275
Query: 45 ------------------SLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDG 86
LL +G DD VWD L L H +RV+ + +T DG
Sbjct: 276 SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDG 335
Query: 87 STLISAGRDKVVNLWD 102
+ + D + +W+
Sbjct: 336 MAVATGSWDSFLKIWN 351
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 57/303 (18%), Positives = 117/303 (38%), Gaps = 27/303 (8%)
Query: 69 TLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGS 128
TL H +++ +M +D L+SA +D + +WD + +P CA P
Sbjct: 61 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 120
Query: 129 AF------DSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQ------K 176
+ D+ S YN +K + ++ + G G + S C +
Sbjct: 121 NYVACGGLDNICSIYN---LKTREGNVRVSRELAGHTGYL------SCCRFLDDNQIVTS 171
Query: 177 SSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMEL---ILSK 233
S D T + ++ + T T + L + D +L + + K ++ + +
Sbjct: 172 SGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQ 231
Query: 234 RLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCAL 293
G+ +I + F + A ++ +++DL + + H I+ + + +
Sbjct: 232 TFTGHESDINAICFFPNGNAF-ATGSDDATCRLFDLRADQ-ELMTYSHDNIICGITSVSF 289
Query: 294 SSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIK 353
S L++ G D + +WD+ GV GH V + + + +GS D +K
Sbjct: 290 SKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGM-AVATGSWDSFLK 348
Query: 354 VWS 356
+W+
Sbjct: 349 IWN 351
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Query: 26 FKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSD 85
+GH + ++ H TD LL S S D + +WD V + S V + A
Sbjct: 62 LRGHLAKIYAM--HWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 119
Query: 86 GSTLISAGRDKVVNLWDLR 104
G+ + G D + ++++L+
Sbjct: 120 GNYVACGGLDNICSIYNLK 138
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 70/331 (21%), Positives = 138/331 (41%), Gaps = 22/331 (6%)
Query: 210 ADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDL 269
AD L T P ++++ + L G+ +I + + G + + L A+ ++ ++D
Sbjct: 26 ADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHW-GTDSRLLLSASQDGKLIIWDS 84
Query: 270 SSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR-CCVGVG---TG 325
+ + + + S V+ TCA + + G DN +++ ++R V V G
Sbjct: 85 YTTNKVHAIPLRSSWVM---TCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAG 141
Query: 326 HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINS 385
H G + F N +V+ S D T +W + + H D+ S
Sbjct: 142 HTGYLSCCRFLD--DNQIVTSSGDTTCALWDIE----------TGQQTTTFTGHTGDVMS 189
Query: 386 LAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKT 445
L++AP+ L +G+ D +A +W + + + TF GH+ I ++ F P T S D T
Sbjct: 190 LSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT 249
Query: 446 IKIWSISDGSCLKTF--EGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD 503
+++ + L T+ + + SF G +++ D +W +
Sbjct: 250 CRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA 309
Query: 504 KHEDKIWALAVGKKTEMFATGGSDALVNLWH 534
H++++ L V ATG D+ + +W+
Sbjct: 310 GHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 49/106 (46%), Gaps = 4/106 (3%)
Query: 26 FKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSD 85
GH G +S F D + + + S D T +WD+ + T H V S+++ D
Sbjct: 139 LAGHTGYLSCCRF---LDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPD 195
Query: 86 GSTLISAGRDKVVNLWDLRDYSCKLTVPTYEM-VEAVCAIPPGSAF 130
+S D LWD+R+ C+ T +E + A+C P G+AF
Sbjct: 196 TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAF 241
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 5/117 (4%)
Query: 8 ADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCV 67
D +WD++ G T F GH G V S+ PDT L SG+ DA+ ++WD+ C
Sbjct: 162 GDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT--RLFVSGACDASAKLWDVREGMCR 219
Query: 68 ATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAI 124
T H S + ++ +G+ + D L+DLR + TY +C I
Sbjct: 220 QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR---ADQELMTYSHDNIICGI 273
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/136 (22%), Positives = 47/136 (34%), Gaps = 42/136 (30%)
Query: 9 DRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDK------------------------ 44
D +WDV G C F GH+ +++I F P+ +
Sbjct: 205 DASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY 264
Query: 45 ------------------SLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDG 86
LL +G DD VWD L L H +RV+ + +T DG
Sbjct: 265 SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDG 324
Query: 87 STLISAGRDKVVNLWD 102
+ + D + +W+
Sbjct: 325 MAVATGSWDSFLKIWN 340
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 57/303 (18%), Positives = 117/303 (38%), Gaps = 27/303 (8%)
Query: 69 TLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGS 128
TL H +++ +M +D L+SA +D + +WD + +P CA P
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 129 AF------DSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQ------K 176
+ D+ S YN +K + ++ + G G + S C +
Sbjct: 110 NYVACGGLDNICSIYN---LKTREGNVRVSRELAGHTGYL------SCCRFLDDNQIVTS 160
Query: 177 SSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMEL---ILSK 233
S D T + ++ + T T + L + D +L + + K ++ + +
Sbjct: 161 SGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQ 220
Query: 234 RLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCAL 293
G+ +I + F + A ++ +++DL + + H I+ + + +
Sbjct: 221 TFTGHESDINAICFFPNGNAF-ATGSDDATCRLFDLRADQ-ELMTYSHDNIICGITSVSF 278
Query: 294 SSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIK 353
S L++ G D + +WD+ GV GH V + + + +GS D +K
Sbjct: 279 SKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGM-AVATGSWDSFLK 337
Query: 354 VWS 356
+W+
Sbjct: 338 IWN 340
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Query: 26 FKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSD 85
+GH + ++ H TD LL S S D + +WD V + S V + A
Sbjct: 51 LRGHLAKIYAM--HWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
Query: 86 GSTLISAGRDKVVNLWDLR 104
G+ + G D + ++++L+
Sbjct: 109 GNYVACGGLDNICSIYNLK 127
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 70/331 (21%), Positives = 138/331 (41%), Gaps = 22/331 (6%)
Query: 210 ADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDL 269
AD L T P ++++ + L G+ +I + + G + + L A+ ++ ++D
Sbjct: 26 ADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHW-GTDSRLLLSASQDGKLIIWDS 84
Query: 270 SSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR-CCVGVG---TG 325
+ + + + S V+ TCA + + G DN +++ ++R V V G
Sbjct: 85 YTTNKVHAIPLRSSWVM---TCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAG 141
Query: 326 HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINS 385
H G + F N +V+ S D T +W + + H D+ S
Sbjct: 142 HTGYLSCCRFLD--DNQIVTSSGDTTCALWDIE----------TGQQTTTFTGHTGDVMS 189
Query: 386 LAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKT 445
L++AP+ L +G+ D +A +W + + + TF GH+ I ++ F P T S D T
Sbjct: 190 LSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT 249
Query: 446 IKIWSISDGSCLKTF--EGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD 503
+++ + L T+ + + SF G +++ D +W +
Sbjct: 250 CRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA 309
Query: 504 KHEDKIWALAVGKKTEMFATGGSDALVNLWH 534
H++++ L V ATG D+ + +W+
Sbjct: 310 GHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 49/106 (46%), Gaps = 4/106 (3%)
Query: 26 FKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSD 85
GH G +S F D + + + S D T +WD+ + T H V S+++ D
Sbjct: 139 LAGHTGYLSCCRF---LDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPD 195
Query: 86 GSTLISAGRDKVVNLWDLRDYSCKLTVPTYEM-VEAVCAIPPGSAF 130
+S D LWD+R+ C+ T +E + A+C P G+AF
Sbjct: 196 TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAF 241
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 5/117 (4%)
Query: 8 ADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCV 67
D +WD++ G T F GH G V S+ PDT L SG+ DA+ ++WD+ C
Sbjct: 162 GDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT--RLFVSGACDASAKLWDVREGMCR 219
Query: 68 ATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAI 124
T H S + ++ +G+ + D L+DLR + TY +C I
Sbjct: 220 QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR---ADQELMTYSHDNIICGI 273
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/136 (22%), Positives = 47/136 (34%), Gaps = 42/136 (30%)
Query: 9 DRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDK------------------------ 44
D +WDV G C F GH+ +++I F P+ +
Sbjct: 205 DASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY 264
Query: 45 ------------------SLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDG 86
LL +G DD VWD L L H +RV+ + +T DG
Sbjct: 265 SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDG 324
Query: 87 STLISAGRDKVVNLWD 102
+ + D + +W+
Sbjct: 325 MAVATGSWDSFLKIWN 340
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 57/303 (18%), Positives = 117/303 (38%), Gaps = 27/303 (8%)
Query: 69 TLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGS 128
TL H +++ +M +D L+SA +D + +WD + +P CA P
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 129 AF------DSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQ------K 176
+ D+ S YN +K + ++ + G G + S C +
Sbjct: 110 NYVACGGLDNICSIYN---LKTREGNVRVSRELAGHTGYL------SCCRFLDDNQIVTS 160
Query: 177 SSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMEL---ILSK 233
S D T + ++ + T T + L + D +L + + K ++ + +
Sbjct: 161 SGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQ 220
Query: 234 RLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCAL 293
G+ +I + F + A ++ +++DL + + H I+ + + +
Sbjct: 221 TFTGHESDINAICFFPNGNAF-ATGSDDATCRLFDLRADQ-ELMTYSHDNIICGITSVSF 278
Query: 294 SSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIK 353
S L++ G D + +WD+ GV GH V + + + +GS D +K
Sbjct: 279 SKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGM-AVATGSWDSFLK 337
Query: 354 VWS 356
+W+
Sbjct: 338 IWN 340
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Query: 26 FKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSD 85
+GH + ++ H TD LL S S D + +WD V + S V + A
Sbjct: 51 LRGHLAKIYAM--HWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
Query: 86 GSTLISAGRDKVVNLWDLR 104
G+ + G D + ++++L+
Sbjct: 109 GNYVACGGLDNICSIYNLK 127
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/241 (23%), Positives = 116/241 (48%), Gaps = 13/241 (5%)
Query: 300 IVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDG 359
IVTG ++ +RLW+ ++ + V H + +V ++K ++S ++ +W+
Sbjct: 123 IVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKD-GTHIISMDVENVTILWNV-- 178
Query: 360 LSDDAEQPMNLK---AKAVVAAHGKDINSLAV----APNDSLVCTGSQDRTACVWRLPDL 412
+S Q LK ++ A + SL V +D V G + V+++ +
Sbjct: 179 ISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKG-AIFVYQITEK 237
Query: 413 VSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASF 472
GH I +EF+ ++++++AS D T++IW +G+ F GH+ S++ AS+
Sbjct: 238 TPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASW 297
Query: 473 LTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNL 532
+ +++SC DG V+LW+++ +A I+A + + + +A D VN+
Sbjct: 298 VGD-DKVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNV 356
Query: 533 W 533
+
Sbjct: 357 Y 357
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 45/101 (44%), Gaps = 3/101 (2%)
Query: 4 LLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLA 63
++ G + V+ + T GH G +S + F+ DT+K LL S SDD T+R+W
Sbjct: 221 VIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFN-DTNK-LLLSASDDGTLRIWHGGN 278
Query: 64 KKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLR 104
H + S + D +IS D V LW L+
Sbjct: 279 GNSQNCFYGHSQSIVSASWVGD-DKVISCSMDGSVRLWSLK 318
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 59/140 (42%), Gaps = 5/140 (3%)
Query: 4 LLEGADRKVL-VWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLL 62
LL +D L +W G + F GH + S + D DK + S S D +VR+W L
Sbjct: 262 LLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGD-DK--VISCSMDGSVRLWSLK 318
Query: 63 AKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVC 122
+A + + I+ DG A D VN++DL+ + K + Y + +
Sbjct: 319 QNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSK-SRSLYGNRDGIL 377
Query: 123 AIPPGSAFDSFLSSYNQQTI 142
P + S+ SS + I
Sbjct: 378 NPLPIPLYASYQSSQDNDYI 397
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 96/230 (41%), Gaps = 61/230 (26%)
Query: 325 GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS---------------------------- 356
GH ++++ L +L+S S DHTI +W
Sbjct: 179 GHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVA 238
Query: 357 --------FDGLSDDAE-------QPMNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQ 400
F ++DD + K V AH ++N L+ P ++ ++ TGS
Sbjct: 239 WHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSA 298
Query: 401 DRTACVWRLPDL-VSVVTFRGHKRGIWSVEFSPVDQVVITASG-DKTIKIWSIS------ 452
D+T +W L +L + + +F HK I+ V++SP ++ ++ +SG D+ + +W +S
Sbjct: 299 DKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQ 358
Query: 453 ------DGS--CLKTFEGHTSSVLRASFLTRGAQIV-SCGADGLVKLWTV 493
DG L GHT+ + S+ I+ S D ++++W +
Sbjct: 359 STEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 408
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/235 (20%), Positives = 98/235 (41%), Gaps = 15/235 (6%)
Query: 190 KRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLG 249
K G+ + N LL + D + L+ P++ + G+ + D+ +
Sbjct: 182 KEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHL 241
Query: 250 EEEQYLAVATNIEQVQVYDLSSMSCS---YVLAGHSEIVLCLDTCALSSGKILIVTGSKD 306
E + +++ ++D + + S + + H+ V CL S + ++ TGS D
Sbjct: 242 LHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYS--EFILATGSAD 299
Query: 307 NSVRLWDSES-RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGL----- 360
+V LWD + + + H + V +S + L S +D + VW +
Sbjct: 300 KTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQS 359
Query: 361 SDDAEQ-PMNLKAKAVVAAHGKDINSLAVAPNDS-LVCTGSQDRTACVWRLPDLV 413
++DAE P L + H I+ + PN+ ++C+ S+D VW++ + V
Sbjct: 360 TEDAEDGPPEL--LFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENV 412
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 12/120 (10%)
Query: 2 FALLEGADRKVLVWDVDGGFCTH-------YFKGHKGVVSSILFHPDTDKSLLFSGSDDA 54
+ L D + +WD++ H F GH VV + +H +SL S +DD
Sbjct: 196 YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHL-LHESLFGSVADDQ 254
Query: 55 TVRVWDLL---AKKCVATLDKHFSRVTSMAITSDGSTLISAGR-DKVVNLWDLRDYSCKL 110
+ +WD K T+D H + V ++ +++ G DK V LWDLR+ KL
Sbjct: 255 KLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKL 314
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 53/100 (53%), Gaps = 6/100 (6%)
Query: 9 DRKVLVWDVDGGFCT---HYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK 65
D+K+++WD + H H V+ + F+P ++ +L +GS D TV +WDL K
Sbjct: 253 DQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSE-FILATGSADKTVALWDLRNLK 311
Query: 66 C-VATLDKHFSRVTSMAITSDGSTLI-SAGRDKVVNLWDL 103
+ + + H + + + T++ S+G D+ +++WDL
Sbjct: 312 LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 351
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 2 FALLEG-ADRKVLVWDVDG-GFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVW 59
F L G AD+ V +WD+ H F+ HK + + + P + L SG+ D + VW
Sbjct: 291 FILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT-DRRLHVW 349
Query: 60 DL 61
DL
Sbjct: 350 DL 351
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 96/230 (41%), Gaps = 61/230 (26%)
Query: 325 GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS---------------------------- 356
GH ++++ L +L+S S DHTI +W
Sbjct: 181 GHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVA 240
Query: 357 --------FDGLSDDAE-------QPMNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQ 400
F ++DD + K V AH ++N L+ P ++ ++ TGS
Sbjct: 241 WHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSA 300
Query: 401 DRTACVWRLPDL-VSVVTFRGHKRGIWSVEFSPVDQVVITASG-DKTIKIWSIS------ 452
D+T +W L +L + + +F HK I+ V++SP ++ ++ +SG D+ + +W +S
Sbjct: 301 DKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQ 360
Query: 453 ------DGS--CLKTFEGHTSSVLRASFLTRGAQIV-SCGADGLVKLWTV 493
DG L GHT+ + S+ I+ S D ++++W +
Sbjct: 361 STEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 410
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/235 (20%), Positives = 98/235 (41%), Gaps = 15/235 (6%)
Query: 190 KRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLG 249
K G+ + N LL + D + L+ P++ + G+ + D+ +
Sbjct: 184 KEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHL 243
Query: 250 EEEQYLAVATNIEQVQVYDLSSMSCS---YVLAGHSEIVLCLDTCALSSGKILIVTGSKD 306
E + +++ ++D + + S + + H+ V CL S + ++ TGS D
Sbjct: 244 LHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYS--EFILATGSAD 301
Query: 307 NSVRLWDSES-RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGL----- 360
+V LWD + + + H + V +S + L S +D + VW +
Sbjct: 302 KTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQS 361
Query: 361 SDDAEQ-PMNLKAKAVVAAHGKDINSLAVAPNDS-LVCTGSQDRTACVWRLPDLV 413
++DAE P L + H I+ + PN+ ++C+ S+D VW++ + V
Sbjct: 362 TEDAEDGPPEL--LFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENV 414
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 12/120 (10%)
Query: 2 FALLEGADRKVLVWDVDGGFCTH-------YFKGHKGVVSSILFHPDTDKSLLFSGSDDA 54
+ L D + +WD++ H F GH VV + +H +SL S +DD
Sbjct: 198 YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHL-LHESLFGSVADDQ 256
Query: 55 TVRVWDLL---AKKCVATLDKHFSRVTSMAITSDGSTLISAGR-DKVVNLWDLRDYSCKL 110
+ +WD K T+D H + V ++ +++ G DK V LWDLR+ KL
Sbjct: 257 KLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKL 316
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 53/100 (53%), Gaps = 6/100 (6%)
Query: 9 DRKVLVWDVDGGFCT---HYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK 65
D+K+++WD + H H V+ + F+P ++ +L +GS D TV +WDL K
Sbjct: 255 DQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSE-FILATGSADKTVALWDLRNLK 313
Query: 66 C-VATLDKHFSRVTSMAITSDGSTLI-SAGRDKVVNLWDL 103
+ + + H + + + T++ S+G D+ +++WDL
Sbjct: 314 LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 353
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 2 FALLEG-ADRKVLVWDVDG-GFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVW 59
F L G AD+ V +WD+ H F+ HK + + + P + L SG+ D + VW
Sbjct: 293 FILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT-DRRLHVW 351
Query: 60 DL 61
DL
Sbjct: 352 DL 353
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 96/230 (41%), Gaps = 61/230 (26%)
Query: 325 GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS---------------------------- 356
GH ++++ L +L+S S DHTI +W
Sbjct: 183 GHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVA 242
Query: 357 --------FDGLSDDAE-------QPMNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQ 400
F ++DD + K V AH ++N L+ P ++ ++ TGS
Sbjct: 243 WHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSA 302
Query: 401 DRTACVWRLPDL-VSVVTFRGHKRGIWSVEFSPVDQVVITASG-DKTIKIWSIS------ 452
D+T +W L +L + + +F HK I+ V++SP ++ ++ +SG D+ + +W +S
Sbjct: 303 DKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQ 362
Query: 453 ------DGS--CLKTFEGHTSSVLRASFLTRGAQIV-SCGADGLVKLWTV 493
DG L GHT+ + S+ I+ S D ++++W +
Sbjct: 363 STEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 412
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/235 (20%), Positives = 98/235 (41%), Gaps = 15/235 (6%)
Query: 190 KRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLG 249
K G+ + N LL + D + L+ P++ + G+ + D+ +
Sbjct: 186 KEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHL 245
Query: 250 EEEQYLAVATNIEQVQVYDLSSMSCS---YVLAGHSEIVLCLDTCALSSGKILIVTGSKD 306
E + +++ ++D + + S + + H+ V CL S + ++ TGS D
Sbjct: 246 LHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYS--EFILATGSAD 303
Query: 307 NSVRLWDSES-RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGL----- 360
+V LWD + + + H + V +S + L S +D + VW +
Sbjct: 304 KTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQS 363
Query: 361 SDDAEQ-PMNLKAKAVVAAHGKDINSLAVAPNDS-LVCTGSQDRTACVWRLPDLV 413
++DAE P L + H I+ + PN+ ++C+ S+D VW++ + V
Sbjct: 364 TEDAEDGPPEL--LFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENV 416
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 12/120 (10%)
Query: 2 FALLEGADRKVLVWDVDGGFCTH-------YFKGHKGVVSSILFHPDTDKSLLFSGSDDA 54
+ L D + +WD++ H F GH VV + +H +SL S +DD
Sbjct: 200 YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHL-LHESLFGSVADDQ 258
Query: 55 TVRVWDLL---AKKCVATLDKHFSRVTSMAITSDGSTLISAGR-DKVVNLWDLRDYSCKL 110
+ +WD K T+D H + V ++ +++ G DK V LWDLR+ KL
Sbjct: 259 KLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKL 318
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 53/100 (53%), Gaps = 6/100 (6%)
Query: 9 DRKVLVWDVDGGFCT---HYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK 65
D+K+++WD + H H V+ + F+P ++ +L +GS D TV +WDL K
Sbjct: 257 DQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSE-FILATGSADKTVALWDLRNLK 315
Query: 66 C-VATLDKHFSRVTSMAITSDGSTLI-SAGRDKVVNLWDL 103
+ + + H + + + T++ S+G D+ +++WDL
Sbjct: 316 LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 355
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 2 FALLEG-ADRKVLVWDVDG-GFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVW 59
F L G AD+ V +WD+ H F+ HK + + + P + L SG+ D + VW
Sbjct: 295 FILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT-DRRLHVW 353
Query: 60 DL 61
DL
Sbjct: 354 DL 355
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 72/148 (48%), Gaps = 12/148 (8%)
Query: 371 KAKAVVAAHGKDINSLAVAP-NDSLVCTGSQDRTACVWRLPD--LV-----SVVTFRGHK 422
K +V H + +A P ND+++ +GS+D T VW +PD LV V+T GH
Sbjct: 72 KNVPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHT 131
Query: 423 RGIWSVEFSPVDQ-VVITASGDKTIKIWSISDGSCLKTF--EGHTSSVLRASFLTRGAQI 479
+ + V + P Q V+++A D I +W + G+ + T + H ++ + GA I
Sbjct: 132 KRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALI 191
Query: 480 VSCGADGLVKLWTVRTGECIATYDK-HE 506
+ D V++ R G +A D+ HE
Sbjct: 192 CTSCRDKRVRVIEPRKGTVVAEKDRPHE 219
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 50/93 (53%), Gaps = 9/93 (9%)
Query: 28 GHKGVVSSILFHPDTDKSLLFSGSDDATVRVWD-------LLAKKCVATLDKHFSRVTSM 80
GH V I + P D +++ SGS+D TV VW+ L ++ V TL+ H RV +
Sbjct: 79 GHTAPVLDIAWXPHND-NVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIV 137
Query: 81 AI-TSDGSTLISAGRDKVVNLWDLRDYSCKLTV 112
A + + L+SAG D V+ +WD+ + LT+
Sbjct: 138 AWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTL 170
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 10/105 (9%)
Query: 9 DRKVLVWDV-DGGFCTHY------FKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDL 61
D V+VW++ DGG +GH V + +HP LL +G D+ + VWD+
Sbjct: 103 DCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDN-VILVWDV 161
Query: 62 LAKKCVATL--DKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLR 104
V TL D H + S+ + DG+ + ++ RDK V + + R
Sbjct: 162 GTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPR 206
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 57/138 (41%), Gaps = 27/138 (19%)
Query: 277 VLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES-------RCCVGVGTGHMGA 329
++ GH+ VL D +I +GS+D +V +W+ R V GH
Sbjct: 76 LVXGHTAPVL--DIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKR 133
Query: 330 VGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVA 389
VG VA+ QN L+S D+ I VW ++ A V G D++ +
Sbjct: 134 VGIVAWHPTAQNVLLSAGXDNVILVW-------------DVGTGAAVLTLGPDVHPDTIY 180
Query: 390 PND-----SLVCTGSQDR 402
D +L+CT +D+
Sbjct: 181 SVDWSRDGALICTSCRDK 198
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 72/148 (48%), Gaps = 12/148 (8%)
Query: 371 KAKAVVAAHGKDINSLAVAP-NDSLVCTGSQDRTACVWRLPD--LV-----SVVTFRGHK 422
K +V H + +A P ND+++ +GS+D T VW +PD LV V+T GH
Sbjct: 72 KNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHT 131
Query: 423 RGIWSVEFSPVDQVVITASG-DKTIKIWSISDGSCLKTF--EGHTSSVLRASFLTRGAQI 479
+ + V + P Q V+ ++G D I +W + G+ + T + H ++ + GA I
Sbjct: 132 KRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALI 191
Query: 480 VSCGADGLVKLWTVRTGECIATYDK-HE 506
+ D V++ R G +A D+ HE
Sbjct: 192 CTSCRDKRVRVIEPRKGTVVAEKDRPHE 219
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 10/105 (9%)
Query: 9 DRKVLVWDV-DGGFCTHY------FKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDL 61
D V+VW++ DGG +GH V + +HP LL +G D+ + VWD+
Sbjct: 103 DCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDN-VILVWDV 161
Query: 62 LAKKCVATL--DKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLR 104
V TL D H + S+ + DG+ + ++ RDK V + + R
Sbjct: 162 GTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPR 206
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 50/93 (53%), Gaps = 9/93 (9%)
Query: 28 GHKGVVSSILFHPDTDKSLLFSGSDDATVRVWD-------LLAKKCVATLDKHFSRVTSM 80
GH V I + P D +++ SGS+D TV VW+ L ++ V TL+ H RV +
Sbjct: 79 GHTAPVLDIAWCPHND-NVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIV 137
Query: 81 AI-TSDGSTLISAGRDKVVNLWDLRDYSCKLTV 112
A + + L+SAG D V+ +WD+ + LT+
Sbjct: 138 AWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTL 170
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 59/138 (42%), Gaps = 27/138 (19%)
Query: 277 VLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES-------RCCVGVGTGHMGA 329
++ GH+ VL + C + +I +GS+D +V +W+ R V GH
Sbjct: 76 LVCGHTAPVLDIAWCPHNDN--VIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKR 133
Query: 330 VGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVA 389
VG VA+ QN L+S D+ I VW ++ A V G D++ +
Sbjct: 134 VGIVAWHPTAQNVLLSAGCDNVILVW-------------DVGTGAAVLTLGPDVHPDTIY 180
Query: 390 PND-----SLVCTGSQDR 402
D +L+CT +D+
Sbjct: 181 SVDWSRDGALICTSCRDK 198
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 89/219 (40%), Gaps = 44/219 (20%)
Query: 277 VLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVG--------TGHMG 328
L+GHS+ V L G+ L +G DN V +W S G G T H G
Sbjct: 225 TLSGHSQEVCGLRWAP--DGRHL-ASGGNDNLVNVWPS----APGEGGWVPLQTFTQHQG 277
Query: 329 AVGAVAFSKKLQNFLVSG--SSDHTIKVW---------SFDGLSDDAEQPMNLKAKAVVA 377
AV AVA+ N L +G +SD I++W + D S + K +++
Sbjct: 278 AVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELIS 337
Query: 378 AHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVV 437
HG N L +W+ P + V +GH + S+ SP V
Sbjct: 338 GHGFAQNQL------------------VIWKYPTMAKVAELKGHTSRVLSLTMSPDGATV 379
Query: 438 ITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRG 476
+A+ D+T+++W + + E +S ++S + +G
Sbjct: 380 ASAAADETLRLWRCFELDPARRREREKASAAKSSLIHQG 418
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 58/248 (23%), Positives = 105/248 (42%), Gaps = 19/248 (7%)
Query: 250 EEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSV 309
+E YLAV T+ +VQ++D+ + HS V +LS ++ +GS+ +
Sbjct: 157 KEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARV-----GSLSWNSYILSSGSRSGHI 211
Query: 310 RLWDSE-SRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPM 368
D + V +GH V + ++ ++ L SG +D+ + VW + P+
Sbjct: 212 HHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRH-LASGGNDNLVNVWP-SAPGEGGWVPL 269
Query: 369 NLKAKAVVAAHGKDINSLAVAPNDSLVCT---GSQDRTACVWRLPDLVSVVTFRGHKRGI 425
H + ++A P S V G+ DR +W + + H + +
Sbjct: 270 Q-----TFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ-V 323
Query: 426 WSVEFSPVDQVVITASG--DKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCG 483
S+ +SP + +I+ G + IW + + +GHTS VL + GA + S
Sbjct: 324 CSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAA 383
Query: 484 ADGLVKLW 491
AD ++LW
Sbjct: 384 ADETLRLW 391
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Query: 8 ADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCV 67
+DR + +W+V G C H V S IL+ P + + G + +W V
Sbjct: 299 SDRHIRIWNVCSGACLSAVDAHSQVCS-ILWSPHYKELISGHGFAQNQLVIWKYPTMAKV 357
Query: 68 ATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLW 101
A L H SRV S+ ++ DG+T+ SA D+ + LW
Sbjct: 358 AELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/230 (23%), Positives = 106/230 (46%), Gaps = 29/230 (12%)
Query: 288 LDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGA--VGAVAFSKKLQNFLVS 345
L+ SSG +L V + DNSV LW + S + + + +VA+ K+ N+L
Sbjct: 108 LNLVDWSSGNVLAV--ALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKE-GNYLAV 164
Query: 346 GSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTAC 405
G+S +++W D +Q L+ + +H + SL+ N ++ +GS R+
Sbjct: 165 GTSSAEVQLW-------DVQQQKRLRN---MTSHSARVGSLSW--NSYILSSGS--RSGH 210
Query: 406 VWRLPDLVS---VVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGS----CLK 458
+ V+ V T GH + + + ++P + + + D + +W + G L+
Sbjct: 211 IHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQ 270
Query: 459 TFEGHTSSVLRASFLTRGAQIVSCG---ADGLVKLWTVRTGECIATYDKH 505
TF H +V ++ + +++ G +D +++W V +G C++ D H
Sbjct: 271 TFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH 320
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 5/92 (5%)
Query: 11 KVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDL-LAKKCVAT 69
+V +WDV H V S+ + + +L SGS + D+ +A+ VAT
Sbjct: 170 EVQLWDVQQQKRLRNMTSHSARVGSLSW----NSYILSSGSRSGHIHHHDVRVAEHHVAT 225
Query: 70 LDKHFSRVTSMAITSDGSTLISAGRDKVVNLW 101
L H V + DG L S G D +VN+W
Sbjct: 226 LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 257
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 7/83 (8%)
Query: 459 TFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE----CIATYDKHEDKIWALA- 513
T GH+ V + G + S G D LV +W GE + T+ +H+ + A+A
Sbjct: 225 TLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAW 284
Query: 514 VGKKTEMFATGG--SDALVNLWH 534
++ + ATGG SD + +W+
Sbjct: 285 CPWQSNVLATGGGTSDRHIRIWN 307
Score = 36.2 bits (82), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Query: 446 IKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGA-DGLVKLWTVRTGEC-IATYD 503
+++W + L+ H++ R L+ + I+S G+ G + VR E +AT
Sbjct: 171 VQLWDVQQQKRLRNMTSHSA---RVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLS 227
Query: 504 KHEDKIWALAVGKKTEMFATGGSDALVNLW 533
H ++ L A+GG+D LVN+W
Sbjct: 228 GHSQEVCGLRWAPDGRHLASGGNDNLVNVW 257
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 89/219 (40%), Gaps = 44/219 (20%)
Query: 277 VLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVG--------TGHMG 328
L+GHS+ V L G+ L +G DN V +W S G G T H G
Sbjct: 236 TLSGHSQEVCGLRWAP--DGRHL-ASGGNDNLVNVWPS----APGEGGWVPLQTFTQHQG 288
Query: 329 AVGAVAFSKKLQNFLVSG--SSDHTIKVW---------SFDGLSDDAEQPMNLKAKAVVA 377
AV AVA+ N L +G +SD I++W + D S + K +++
Sbjct: 289 AVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELIS 348
Query: 378 AHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVV 437
HG N L +W+ P + V +GH + S+ SP V
Sbjct: 349 GHGFAQNQL------------------VIWKYPTMAKVAELKGHTSRVLSLTMSPDGATV 390
Query: 438 ITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRG 476
+A+ D+T+++W + + E +S ++S + +G
Sbjct: 391 ASAAADETLRLWRCFELDPARRREREKASAAKSSLIHQG 429
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 58/248 (23%), Positives = 105/248 (42%), Gaps = 19/248 (7%)
Query: 250 EEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSV 309
+E YLAV T+ +VQ++D+ + HS V +LS ++ +GS+ +
Sbjct: 168 KEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARV-----GSLSWNSYILSSGSRSGHI 222
Query: 310 RLWDSE-SRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPM 368
D + V +GH V + ++ ++ L SG +D+ + VW + P+
Sbjct: 223 HHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRH-LASGGNDNLVNVWP-SAPGEGGWVPL 280
Query: 369 NLKAKAVVAAHGKDINSLAVAPNDSLVCT---GSQDRTACVWRLPDLVSVVTFRGHKRGI 425
H + ++A P S V G+ DR +W + + H + +
Sbjct: 281 Q-----TFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ-V 334
Query: 426 WSVEFSPVDQVVITASG--DKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCG 483
S+ +SP + +I+ G + IW + + +GHTS VL + GA + S
Sbjct: 335 CSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAA 394
Query: 484 ADGLVKLW 491
AD ++LW
Sbjct: 395 ADETLRLW 402
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Query: 8 ADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCV 67
+DR + +W+V G C H V S IL+ P + + G + +W V
Sbjct: 310 SDRHIRIWNVCSGACLSAVDAHSQVCS-ILWSPHYKELISGHGFAQNQLVIWKYPTMAKV 368
Query: 68 ATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLW 101
A L H SRV S+ ++ DG+T+ SA D+ + LW
Sbjct: 369 AELKGHTSRVLSLTMSPDGATVASAAADETLRLW 402
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/230 (23%), Positives = 106/230 (46%), Gaps = 29/230 (12%)
Query: 288 LDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGA--VGAVAFSKKLQNFLVS 345
L+ SSG +L V + DNSV LW + S + + + +VA+ K+ N+L
Sbjct: 119 LNLVDWSSGNVLAV--ALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKE-GNYLAV 175
Query: 346 GSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTAC 405
G+S +++W D +Q L+ + +H + SL+ N ++ +GS R+
Sbjct: 176 GTSSAEVQLW-------DVQQQKRLRN---MTSHSARVGSLSW--NSYILSSGS--RSGH 221
Query: 406 VWRLPDLVS---VVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGS----CLK 458
+ V+ V T GH + + + ++P + + + D + +W + G L+
Sbjct: 222 IHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQ 281
Query: 459 TFEGHTSSVLRASFLTRGAQIVSCG---ADGLVKLWTVRTGECIATYDKH 505
TF H +V ++ + +++ G +D +++W V +G C++ D H
Sbjct: 282 TFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH 331
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 5/92 (5%)
Query: 11 KVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDL-LAKKCVAT 69
+V +WDV H V S+ + + +L SGS + D+ +A+ VAT
Sbjct: 181 EVQLWDVQQQKRLRNMTSHSARVGSLSW----NSYILSSGSRSGHIHHHDVRVAEHHVAT 236
Query: 70 LDKHFSRVTSMAITSDGSTLISAGRDKVVNLW 101
L H V + DG L S G D +VN+W
Sbjct: 237 LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 268
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 7/83 (8%)
Query: 459 TFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE----CIATYDKHEDKIWALA- 513
T GH+ V + G + S G D LV +W GE + T+ +H+ + A+A
Sbjct: 236 TLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAW 295
Query: 514 VGKKTEMFATGG--SDALVNLWH 534
++ + ATGG SD + +W+
Sbjct: 296 CPWQSNVLATGGGTSDRHIRIWN 318
Score = 36.2 bits (82), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Query: 446 IKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGA-DGLVKLWTVRTGEC-IATYD 503
+++W + L+ H++ R L+ + I+S G+ G + VR E +AT
Sbjct: 182 VQLWDVQQQKRLRNMTSHSA---RVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLS 238
Query: 504 KHEDKIWALAVGKKTEMFATGGSDALVNLW 533
H ++ L A+GG+D LVN+W
Sbjct: 239 GHSQEVCGLRWAPDGRHLASGGNDNLVNVW 268
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 51/230 (22%), Positives = 95/230 (41%), Gaps = 61/230 (26%)
Query: 325 GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS---------------------------- 356
GH ++++ L L+S S DHT+ +W
Sbjct: 177 GHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVA 236
Query: 357 --------FDGLSDDAE-------QPMNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQ 400
F ++DD + K +V AH ++N L+ P ++ ++ TGS
Sbjct: 237 WHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSA 296
Query: 401 DRTACVWRLPDL-VSVVTFRGHKRGIWSVEFSPVDQVVITASG-DKTIKIWSIS------ 452
D+T +W L +L + + TF HK I+ V +SP ++ ++ +SG D+ + +W +S
Sbjct: 297 DKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQ 356
Query: 453 ------DGS--CLKTFEGHTSSVLRASFLTRGAQIV-SCGADGLVKLWTV 493
DG L GHT+ + S+ ++ S D ++++W +
Sbjct: 357 SAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQM 406
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/216 (20%), Positives = 93/216 (43%), Gaps = 15/216 (6%)
Query: 205 LLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQV 264
LL + D + L+ P++ + G++ + D+ + E + +++
Sbjct: 195 LLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKL 254
Query: 265 QVYDLSSMSCS---YVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES-RCCV 320
++D S + S +++ H+ V CL S + ++ TGS D +V LWD + + +
Sbjct: 255 MIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYS--EFILATGSADKTVALWDLRNLKLKL 312
Query: 321 GVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGL-----SDDAEQ-PMNLKAKA 374
H + V +S + L S +D + VW + ++DAE P L
Sbjct: 313 HTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPEL--LF 370
Query: 375 VVAAHGKDINSLAVAPNDS-LVCTGSQDRTACVWRL 409
+ H I+ + PN+ ++C+ S+D +W++
Sbjct: 371 IHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQM 406
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 51/113 (45%), Gaps = 12/113 (10%)
Query: 9 DRKVLVWDVDGGF-------CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDL 61
D V +WD++ G F GH VV + +H +SL S +DD + +WD
Sbjct: 201 DHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHL-LHESLFGSVADDQKLMIWDT 259
Query: 62 LAK---KCVATLDKHFSRVTSMAITSDGSTLISAGR-DKVVNLWDLRDYSCKL 110
+ K +D H + V ++ +++ G DK V LWDLR+ KL
Sbjct: 260 RSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKL 312
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 53/100 (53%), Gaps = 6/100 (6%)
Query: 9 DRKVLVWDVDGGFCT---HYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK 65
D+K+++WD + H H V+ + F+P ++ +L +GS D TV +WDL K
Sbjct: 251 DQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSE-FILATGSADKTVALWDLRNLK 309
Query: 66 C-VATLDKHFSRVTSMAITSDGSTLI-SAGRDKVVNLWDL 103
+ T + H + + + T++ S+G D+ +N+WDL
Sbjct: 310 LKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDL 349
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 2 FALLEG-ADRKVLVWDVDG-GFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVW 59
F L G AD+ V +WD+ H F+ HK + + + P + L SG+ D + VW
Sbjct: 289 FILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGT-DRRLNVW 347
Query: 60 DL 61
DL
Sbjct: 348 DL 349
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 74/187 (39%), Gaps = 20/187 (10%)
Query: 278 LAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSK 337
L GHS V L A S + + +G DN V++WD+ S T H AV AVA+
Sbjct: 213 LQGHSSEVCGL---AWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCP 269
Query: 338 KLQNFLVSGSS--DHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLV 395
N L +G D I W+ A+ G + SL +P+ +
Sbjct: 270 WQSNLLATGGGTMDKQIHFWN-----------AATGARVNTVDAGSQVTSLIWSPHSKEI 318
Query: 396 CT--GSQDRTACVWRLPD--LVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSI 451
+ G D +W L V H + SP +++ TA+ D+ +K W +
Sbjct: 319 MSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRV 378
Query: 452 SDGSCLK 458
DG +K
Sbjct: 379 YDGDHVK 385
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 53/116 (45%), Gaps = 6/116 (5%)
Query: 12 VLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDL-LAKKCVATL 70
V ++DV+ GH+ V + + ++ +L SGS + D+ +A + TL
Sbjct: 158 VDIYDVESQTKLRTMAGHQARVGCLSW----NRHVLSSGSRSGAIHHHDVRIANHQIGTL 213
Query: 71 DKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYE-MVEAVCAIP 125
H S V +A SDG L S G D VV +WD R K T + V+AV P
Sbjct: 214 QGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCP 269
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Query: 457 LKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALA-VG 515
+ T +GH+S V ++ + G Q+ S G D +V++W R+ T H + A+A
Sbjct: 210 IGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCP 269
Query: 516 KKTEMFATGGS--DALVNLWHDST 537
++ + ATGG D ++ W+ +T
Sbjct: 270 WQSNLLATGGGTMDKQIHFWNAAT 293
Score = 32.3 bits (72), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 5/109 (4%)
Query: 427 SVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGA-D 485
SV++S + G+ + I+ + + L+T GH + R L+ ++S G+
Sbjct: 139 SVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQA---RVGCLSWNRHVLSSGSRS 195
Query: 486 GLVKLWTVR-TGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 533
G + VR I T H ++ LA A+GG+D +V +W
Sbjct: 196 GAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIW 244
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 33 VSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLD--KHFSRVTSMAITSDGSTLI 90
V+S+++ P + + + G D + +W + +D H +RV A++ DG L
Sbjct: 306 VTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILS 365
Query: 91 SAGRDKVVNLWDLRD 105
+A D+ + W + D
Sbjct: 366 TAASDENLKFWRVYD 380
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/228 (22%), Positives = 93/228 (40%), Gaps = 61/228 (26%)
Query: 325 GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS---------------------------- 356
GH ++++ L L+S S DHT+ +W
Sbjct: 177 GHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVA 236
Query: 357 --------FDGLSDDAE-------QPMNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQ 400
F ++DD + K +V AH ++N L+ P ++ ++ TGS
Sbjct: 237 WHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSA 296
Query: 401 DRTACVWRLPDL-VSVVTFRGHKRGIWSVEFSPVDQVVITASG-DKTIKIWSIS------ 452
D+T +W L +L + + TF HK I+ V +SP ++ ++ +SG D+ + +W +S
Sbjct: 297 DKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQ 356
Query: 453 ------DGS--CLKTFEGHTSSVLRASFLTRGAQIV-SCGADGLVKLW 491
DG L GHT+ + S+ ++ S D + ++W
Sbjct: 357 SAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIXQIW 404
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/215 (20%), Positives = 92/215 (42%), Gaps = 15/215 (6%)
Query: 205 LLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQV 264
LL + D + L+ P++ + G++ + D+ + E + +++
Sbjct: 195 LLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKL 254
Query: 265 QVYDLSSMSCS---YVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES-RCCV 320
++D S + S +++ H+ V CL S + ++ TGS D +V LWD + + +
Sbjct: 255 XIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYS--EFILATGSADKTVALWDLRNLKLKL 312
Query: 321 GVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGL-----SDDAEQ-PMNLKAKA 374
H + V +S + L S +D + VW + ++DAE P L
Sbjct: 313 HTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPEL--LF 370
Query: 375 VVAAHGKDINSLAVAPNDS-LVCTGSQDRTACVWR 408
+ H I+ + PN+ ++C+ S+D +W+
Sbjct: 371 IHGGHTAKISDFSWNPNEPWVICSVSEDNIXQIWQ 405
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 51/113 (45%), Gaps = 12/113 (10%)
Query: 9 DRKVLVWDVDGGF-------CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDL 61
D V +WD++ G F GH VV + +H +SL S +DD + +WD
Sbjct: 201 DHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHL-LHESLFGSVADDQKLXIWDT 259
Query: 62 LAK---KCVATLDKHFSRVTSMAITSDGSTLISAGR-DKVVNLWDLRDYSCKL 110
+ K +D H + V ++ +++ G DK V LWDLR+ KL
Sbjct: 260 RSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKL 312
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 52/100 (52%), Gaps = 6/100 (6%)
Query: 9 DRKVLVWDVDGGFCT---HYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK 65
D+K+ +WD + H H V+ + F+P ++ +L +GS D TV +WDL K
Sbjct: 251 DQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSE-FILATGSADKTVALWDLRNLK 309
Query: 66 C-VATLDKHFSRVTSMAITSDGSTLI-SAGRDKVVNLWDL 103
+ T + H + + + T++ S+G D+ +N+WDL
Sbjct: 310 LKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDL 349
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 2 FALLEG-ADRKVLVWDVDG-GFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVW 59
F L G AD+ V +WD+ H F+ HK + + + P + L SG+ D + VW
Sbjct: 289 FILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGT-DRRLNVW 347
Query: 60 DL 61
DL
Sbjct: 348 DL 349
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 64/144 (44%), Gaps = 14/144 (9%)
Query: 360 LSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSL-VCTGSQDRTACVWRLPDLVSVVTF 418
L D NL +A + +NS+ P+ + +GS D T ++ P TF
Sbjct: 133 LFDTGTSNGNLTGQA------RAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTF 186
Query: 419 RGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFE-------GHTSSVLRAS 471
H + + SV ++P + + GD TI +++ DG+ FE H+ SV +
Sbjct: 187 GEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLT 246
Query: 472 FLTRGAQIVSCGADGLVKLWTVRT 495
+ G +I S AD +K+W V T
Sbjct: 247 WSPDGTKIASASADKTIKIWNVAT 270
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 59/255 (23%), Positives = 96/255 (37%), Gaps = 39/255 (15%)
Query: 312 WDSESRCCVGVG---------------------TGHMGAVGAVAFSKKLQNFLVSGSSDH 350
WDSES+ VG TG A+ +V F ++SGS D+
Sbjct: 111 WDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDN 170
Query: 351 TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLP 410
T+ + F+G K K+ H K ++S+ P+ SL + D T ++
Sbjct: 171 TVAI--FEGPP--------FKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGV 220
Query: 411 DLVSVVTFR-------GHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFE-G 462
D F H ++ + +SP + +AS DKTIKIW+++ KT G
Sbjct: 221 DGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVG 280
Query: 463 HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFA 522
+ + +VS A+G + G H I AL+ +
Sbjct: 281 TRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLF 340
Query: 523 TGGSDALVNLWHDST 537
+ ++ +N W ST
Sbjct: 341 SADAEGHINSWDIST 355
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 48/103 (46%), Gaps = 1/103 (0%)
Query: 3 ALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLL 62
A+ EG +R V+ D G G ++S+ F P ++ SGSDD TV +++
Sbjct: 120 AVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRII-SGSDDNTVAIFEGP 178
Query: 63 AKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRD 105
K +T +H V S+ DGS S G D + L++ D
Sbjct: 179 PFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVD 221
Score = 36.2 bits (82), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 95/471 (20%), Positives = 184/471 (39%), Gaps = 92/471 (19%)
Query: 26 FKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLD-------KHFSRVT 78
F H V S+ ++PD SL S D T+ +++ + + H V
Sbjct: 186 FGEHTKFVHSVRYNPD--GSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVF 243
Query: 79 SMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVE-----------AVCAIPPG 127
+ + DG+ + SA DK + +W++ + T+P +E A+ +I
Sbjct: 244 GLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSI--- 300
Query: 128 SAFDSFLSSYNQQ--TIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFE 185
+ + F++ N + +I + R + +AD L+ + S++
Sbjct: 301 -SANGFINFVNPELGSIDQVRYGHNKAITALSS-------SADGKTLFSADAEGHINSWD 352
Query: 186 MDD--SKRGF--TAATVL-----PSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLV 236
+ S R F AT++ S L V+ D L + VP + SK +
Sbjct: 353 ISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKV-----VPAGGSGVDSSKAVA 407
Query: 237 G-YNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDT--CAL 293
+ + L L + + +AVA + + +Y + +E+ + ++ AL
Sbjct: 408 NKLSSQPLGLAVSADGD--IAVAACYKHIAIYSHGKL---------TEVPISYNSSCVAL 456
Query: 294 SSGKILIVTGSKDNSVRLWD------SESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGS 347
S+ K + G +D+ V ++ SE + V H + +VAFS FLV +
Sbjct: 457 SNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIV-----HPAEITSVAFSNN-GAFLV--A 508
Query: 348 SDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVW 407
+D + KV + ++++ E L H + ++ +P++ + TGS D + VW
Sbjct: 509 TDQSRKVIPYS-VANNFE----LAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVW 563
Query: 408 RL--PDLVSVVTFRGHKRG-----IWSVEFSPVDQVVITASGDKTIKIWSI 451
+ P ++ H IW E +++A D IK W++
Sbjct: 564 NMNKPSDHPIIIKGAHAMSSVNSVIWLNE-----TTIVSAGQDSNIKFWNV 609
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 68/166 (40%), Gaps = 15/166 (9%)
Query: 333 VAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND 392
VA S Q F+ G D + V+ G S + K +V H +I S+A + N
Sbjct: 454 VALSNDKQ-FVAVGGQDSKVHVYKLSGASVS-------EVKTIV--HPAEITSVAFSNNG 503
Query: 393 SLVCTGSQDRTACVWRLPD---LVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIW 449
+ + Q R + + + L ++ H + V +SP + + T S D ++ +W
Sbjct: 504 AFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVW 563
Query: 450 SISDGS--CLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTV 493
+++ S + H S + + IVS G D +K W V
Sbjct: 564 NMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 609
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 50/107 (46%), Gaps = 7/107 (6%)
Query: 2 FALLEGADRKVLVWDVDGGF---CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRV 58
F + RKV+ + V F T+ + H V+ + + PD + L +GS D +V V
Sbjct: 505 FLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVR--LATGSLDNSVIV 562
Query: 59 WDL--LAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDL 103
W++ + + H + I + +T++SAG+D + W++
Sbjct: 563 WNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 609
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/230 (22%), Positives = 95/230 (41%), Gaps = 61/230 (26%)
Query: 325 GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS---------------------------- 356
GH ++++ L L+S S DHTI +W
Sbjct: 175 GHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVS 234
Query: 357 --------FDGLSDDAE-------QPMNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQ 400
F ++DD + K V AH ++N L+ P ++ ++ TGS
Sbjct: 235 WHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSA 294
Query: 401 DRTACVWRLPDL-VSVVTFRGHKRGIWSVEFSPVDQVVITASG-DKTIKIWSIS------ 452
D+T +W L +L + + +F HK I+ V++SP ++ ++ +SG D+ + +W +S
Sbjct: 295 DKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQ 354
Query: 453 ------DGSCLKTF--EGHTSSVLRASFLTRGAQIV-SCGADGLVKLWTV 493
DG F GHT+ + S+ ++ S D ++++W +
Sbjct: 355 SPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQM 404
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/216 (21%), Positives = 91/216 (42%), Gaps = 15/216 (6%)
Query: 205 LLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQV 264
LL + D + L+ VP++ + G+ + D+ + E + +++
Sbjct: 193 LLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKL 252
Query: 265 QVYDLSSMSCS---YVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES-RCCV 320
++D S + S + + H+ V CL S + ++ TGS D +V LWD + + +
Sbjct: 253 MIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYS--EFILATGSADKTVALWDLRNLKLKL 310
Query: 321 GVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGL-----SDDAEQ-PMNLKAKA 374
H + V +S + L S +D + VW + +DAE P L
Sbjct: 311 HSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPEL--LF 368
Query: 375 VVAAHGKDINSLAVAPNDS-LVCTGSQDRTACVWRL 409
+ H I+ + PN+ ++C+ S+D VW++
Sbjct: 369 IHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQM 404
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 54/100 (54%), Gaps = 6/100 (6%)
Query: 9 DRKVLVWDV---DGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK 65
D+K+++WD + +H H V+ + F+P ++ +L +GS D TV +WDL K
Sbjct: 249 DQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSE-FILATGSADKTVALWDLRNLK 307
Query: 66 C-VATLDKHFSRVTSMAITSDGSTLI-SAGRDKVVNLWDL 103
+ + + H + + + T++ S+G D+ +N+WDL
Sbjct: 308 LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDL 347
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 5/89 (5%)
Query: 26 FKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK---KCVATLDKHFSRVTSMAI 82
F GH VV + +H +SL S +DD + +WD + K ++D H + V ++
Sbjct: 223 FTGHTAVVEDVSWHL-LHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSF 281
Query: 83 TSDGSTLISAGR-DKVVNLWDLRDYSCKL 110
+++ G DK V LWDLR+ KL
Sbjct: 282 NPYSEFILATGSADKTVALWDLRNLKLKL 310
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 2 FALLEG-ADRKVLVWDVDG-GFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVW 59
F L G AD+ V +WD+ H F+ HK + + + P + L SG+ D + VW
Sbjct: 287 FILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT-DRRLNVW 345
Query: 60 DL 61
DL
Sbjct: 346 DL 347
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 55/108 (50%), Gaps = 17/108 (15%)
Query: 11 KVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDL-LAKKCVAT 69
KV + D+ G C+H +GH+ + ++ + P D +L + S D+ V++WD+ A C+ T
Sbjct: 167 KVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDY-ILATASADSRVKLWDVRRASGCLIT 225
Query: 70 LDK---------------HFSRVTSMAITSDGSTLISAGRDKVVNLWD 102
LD+ H +V + TSDG L++ G D + LW+
Sbjct: 226 LDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWN 273
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 75/189 (39%), Gaps = 25/189 (13%)
Query: 326 HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINS 385
H +V V + S S D T+KVW + L N + + V + H
Sbjct: 98 HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQ--TADVFNFE-ETVYSHHMS---- 150
Query: 386 LAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSP-VDQVVITASGDK 444
V+ LV G++ + L +GH++ I +V +SP D ++ TAS D
Sbjct: 151 -PVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADS 209
Query: 445 TIKIWSISDGS-CLKTFEGHTSSVLRA---------------SFLTRGAQIVSCGADGLV 488
+K+W + S CL T + H +A F + G +++ G D +
Sbjct: 210 RVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRM 269
Query: 489 KLWTVRTGE 497
+LW GE
Sbjct: 270 RLWNSSNGE 278
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 19/118 (16%)
Query: 255 LAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWD- 313
+AV T +VQ+ DL S SCS++L GH + +L + ++ T S D+ V+LWD
Sbjct: 159 VAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRY--DYILATASADSRVKLWDV 216
Query: 314 ---------------SESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS 356
+S+ T H G V + F+ + L G +D+ +++W+
Sbjct: 217 RRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVG-TDNRMRLWN 273
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/240 (21%), Positives = 101/240 (42%), Gaps = 14/240 (5%)
Query: 264 VQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVG 323
++V+D +++ + V E V +S+ L+ G++ V+L D +S C +
Sbjct: 124 LKVWDTNTLQTADVF-NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHIL 182
Query: 324 TGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSF---DGLSDDAEQPMNLKAKAVVA--- 377
GH + AV++S + L + S+D +K+W G +Q K++AV +
Sbjct: 183 QGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANT 242
Query: 378 AHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGH-----KRGI-WSVEFS 431
AH +N L + + T D +W + + + G K+G+ ++V
Sbjct: 243 AHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCG 302
Query: 432 PVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLW 491
+ V G TI ++++ G + +GH +V F + ++ S D + W
Sbjct: 303 CSSEFVFVPYG-STIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAW 361
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 71/164 (43%), Gaps = 9/164 (5%)
Query: 9 DRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVA 68
D+ + VWD + F + V S + T L+ G+ V++ DL + C
Sbjct: 121 DKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSH 180
Query: 69 TLDKHFSRVTSMAITSD-GSTLISAGRDKVVNLWDLRDYS-CKLTVPTYEMVEAVCAIPP 126
L H + +++ + L +A D V LWD+R S C +T+ + ++
Sbjct: 181 ILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKS------ 234
Query: 127 GSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSA 170
A +S +++N + S +H +TVG +R+WN+ +
Sbjct: 235 -QAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNG 277
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 80/183 (43%), Gaps = 28/183 (15%)
Query: 278 LAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVG--------TGHMGA 329
L+GHS+ V L G+ L +G DN V +W S G G T H GA
Sbjct: 146 LSGHSQEVCGLRWAP--DGRHL-ASGGNDNLVNVWPSAP----GEGGWVPLQTFTQHQGA 198
Query: 330 VGAVAFSKKLQNFLVSG--SSDHTIKVWSF-DGLSDDAEQPMNLKAKAVVAAHGKDINSL 386
V AVA+ N L +G +SD I++W+ G A + + + H K++ S
Sbjct: 199 VKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISG 258
Query: 387 AVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTI 446
+ LV +W+ P + V +GH + S+ SP V +A+ D+T+
Sbjct: 259 HGFAQNQLV----------IWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETL 308
Query: 447 KIW 449
++W
Sbjct: 309 RLW 311
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Query: 8 ADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCV 67
+DR + +W+V G C H V S IL+ P + + G + +W V
Sbjct: 219 SDRHIRIWNVCSGACLSAVDAHSQVCS-ILWSPHYKELISGHGFAQNQLVIWKYPTMAKV 277
Query: 68 ATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLW 101
A L H SRV S+ ++ DG+T+ SA D+ + LW
Sbjct: 278 AELKGHTSRVLSLTMSPDGATVASAAADETLRLW 311
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/248 (23%), Positives = 105/248 (42%), Gaps = 19/248 (7%)
Query: 250 EEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSV 309
+E YLAV T+ +VQ++D+ + HS V +LS ++ +GS+ +
Sbjct: 77 KEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARV-----GSLSWNSYILSSGSRSGHI 131
Query: 310 RLWDSE-SRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPM 368
D + V +GH V + ++ ++ L SG +D+ + VW + P+
Sbjct: 132 HHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRH-LASGGNDNLVNVWP-SAPGEGGWVPL 189
Query: 369 NLKAKAVVAAHGKDINSLAVAPNDSLVCT---GSQDRTACVWRLPDLVSVVTFRGHKRGI 425
H + ++A P S V G+ DR +W + + H + +
Sbjct: 190 Q-----TFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ-V 243
Query: 426 WSVEFSPVDQVVITASG--DKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCG 483
S+ +SP + +I+ G + IW + + +GHTS VL + GA + S
Sbjct: 244 CSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAA 303
Query: 484 ADGLVKLW 491
AD ++LW
Sbjct: 304 ADETLRLW 311
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 53/230 (23%), Positives = 106/230 (46%), Gaps = 29/230 (12%)
Query: 288 LDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGA--VGAVAFSKKLQNFLVS 345
L+ SSG +L V + DNSV LW + S + + + +VA+ K+ N+L
Sbjct: 28 LNLVDWSSGNVLAV--ALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKE-GNYLAV 84
Query: 346 GSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTAC 405
G+S +++W D +Q L+ + +H + SL+ N ++ +GS R+
Sbjct: 85 GTSSAEVQLW-------DVQQQKRLRN---MTSHSARVGSLSW--NSYILSSGS--RSGH 130
Query: 406 VWRLPDLVS---VVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGS----CLK 458
+ V+ V T GH + + + ++P + + + D + +W + G L+
Sbjct: 131 IHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQ 190
Query: 459 TFEGHTSSVLRASFLTRGAQIVSCG---ADGLVKLWTVRTGECIATYDKH 505
TF H +V ++ + +++ G +D +++W V +G C++ D H
Sbjct: 191 TFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH 240
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/183 (20%), Positives = 78/183 (42%), Gaps = 17/183 (9%)
Query: 235 LVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYV----LAGHSEIVLCLDT 290
L G+++E+ L++ + ++LA N V V+ + +V H V +
Sbjct: 146 LSGHSQEVCGLRW-APDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAW 204
Query: 291 CALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVS-GSSD 349
C S + G+ D +R+W+ S C+ H V ++ +S + + G +
Sbjct: 205 CPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQ 263
Query: 350 HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRL 409
+ + +W + ++ AE + H + SL ++P+ + V + + D T +WR
Sbjct: 264 NQLVIWKYPTMAKVAE----------LKGHTSRVLSLTMSPDGATVASAAADETLRLWRC 313
Query: 410 PDL 412
+L
Sbjct: 314 FEL 316
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 5/92 (5%)
Query: 11 KVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDL-LAKKCVAT 69
+V +WDV H V S+ + + +L SGS + D+ +A+ VAT
Sbjct: 90 EVQLWDVQQQKRLRNMTSHSARVGSLSW----NSYILSSGSRSGHIHHHDVRVAEHHVAT 145
Query: 70 LDKHFSRVTSMAITSDGSTLISAGRDKVVNLW 101
L H V + DG L S G D +VN+W
Sbjct: 146 LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 177
Score = 36.2 bits (82), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 457 LKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE----CIATYDKHEDKIWAL 512
+ T GH+ V + G + S G D LV +W GE + T+ +H+ + A+
Sbjct: 143 VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAV 202
Query: 513 A-VGKKTEMFATGG--SDALVNLWH 534
A ++ + ATGG SD + +W+
Sbjct: 203 AWCPWQSNVLATGGGTSDRHIRIWN 227
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Query: 446 IKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGA-DGLVKLWTVRTGEC-IATYD 503
+++W + L+ H++ R L+ + I+S G+ G + VR E +AT
Sbjct: 91 VQLWDVQQQKRLRNMTSHSA---RVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLS 147
Query: 504 KHEDKIWALAVGKKTEMFATGGSDALVNLW 533
H ++ L A+GG+D LVN+W
Sbjct: 148 GHSQEVCGLRWAPDGRHLASGGNDNLVNVW 177
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 52/99 (52%), Gaps = 8/99 (8%)
Query: 418 FRGHKRGIWSVEFSPVD-QVVITASGDKTIKIWSISDGSCLKTF---EGHTSSVLRASFL 473
+ GH I ++F P D ++++ S D +++W+I + + F EGH VL A +
Sbjct: 147 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 206
Query: 474 TRGAQIVSCGADGLVKLWTVRTGECI----ATYDKHEDK 508
G +I+SCG D +KLW + + + +YD + +K
Sbjct: 207 LLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNK 245
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 59/145 (40%), Gaps = 23/145 (15%)
Query: 22 CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATL---DKHFSRVT 78
C ++ GH ++ + FHP D +LL S S D +R+W++ VA + H V
Sbjct: 143 CIKHYVGHGNAINELKFHP-RDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVL 201
Query: 79 SMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYN 138
S G ++S G D + LW + + M+ A+ ++D YN
Sbjct: 202 SADYDLLGEKIMSCGMDHSLKLW---------RINSKRMMNAI-----KESYD-----YN 242
Query: 139 QQTIKKKRRSLEIHFITVGERGIVR 163
+ S +IHF R I R
Sbjct: 243 PNKTNRPFISQKIHFPDFSTRDIHR 267
Score = 36.6 bits (83), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Query: 290 TCALS-----SGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLV 344
TCA + S +L V GS+ +R+ + + C+ GH A+ + F + N L+
Sbjct: 110 TCAWTYDSNTSHPLLAVAGSR-GIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLL 168
Query: 345 SGSSDHTIKVWS 356
S S DH +++W+
Sbjct: 169 SVSKDHALRLWN 180
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/112 (20%), Positives = 49/112 (43%), Gaps = 4/112 (3%)
Query: 426 WSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQ-IVSCGA 484
W+ + + ++ A I+I + C+K + GH +++ F R ++S
Sbjct: 113 WTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSK 172
Query: 485 DGLVKLWTVRTGECIATY---DKHEDKIWALAVGKKTEMFATGGSDALVNLW 533
D ++LW ++T +A + + H D++ + E + G D + LW
Sbjct: 173 DHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLW 224
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 4/106 (3%)
Query: 255 LAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDS 314
LAVA + +++ + +M C GH + L L+++ SKD+++RLW+
Sbjct: 124 LAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPN--LLLSVSKDHALRLWNI 181
Query: 315 ESRCCVGVGTGHMGAVGAV--AFSKKLQNFLVSGSSDHTIKVWSFD 358
++ V + G G V A L ++S DH++K+W +
Sbjct: 182 QTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRIN 227
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 52/99 (52%), Gaps = 8/99 (8%)
Query: 418 FRGHKRGIWSVEFSPVD-QVVITASGDKTIKIWSISDGSCLKTF---EGHTSSVLRASFL 473
+ GH I ++F P D ++++ S D +++W+I + + F EGH VL A +
Sbjct: 106 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 165
Query: 474 TRGAQIVSCGADGLVKLWTVRTGECI----ATYDKHEDK 508
G +I+SCG D +KLW + + + +YD + +K
Sbjct: 166 LLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNK 204
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 59/145 (40%), Gaps = 23/145 (15%)
Query: 22 CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATL---DKHFSRVT 78
C ++ GH ++ + FHP D +LL S S D +R+W++ VA + H V
Sbjct: 102 CIKHYVGHGNAINELKFHP-RDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVL 160
Query: 79 SMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYN 138
S G ++S G D + LW + + M+ A+ ++D YN
Sbjct: 161 SADYDLLGEKIMSCGMDHSLKLW---------RINSKRMMNAI-----KESYD-----YN 201
Query: 139 QQTIKKKRRSLEIHFITVGERGIVR 163
+ S +IHF R I R
Sbjct: 202 PNKTNRPFISQKIHFPDFSTRDIHR 226
Score = 36.2 bits (82), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Query: 290 TCALS-----SGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLV 344
TCA + S +L V GS+ +R+ + + C+ GH A+ + F + N L+
Sbjct: 69 TCAWTYDSNTSHPLLAVAGSR-GIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLL 127
Query: 345 SGSSDHTIKVWS 356
S S DH +++W+
Sbjct: 128 SVSKDHALRLWN 139
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/112 (20%), Positives = 49/112 (43%), Gaps = 4/112 (3%)
Query: 426 WSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQ-IVSCGA 484
W+ + + ++ A I+I + C+K + GH +++ F R ++S
Sbjct: 72 WTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSK 131
Query: 485 DGLVKLWTVRTGECIATY---DKHEDKIWALAVGKKTEMFATGGSDALVNLW 533
D ++LW ++T +A + + H D++ + E + G D + LW
Sbjct: 132 DHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLW 183
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 4/106 (3%)
Query: 255 LAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDS 314
LAVA + +++ + +M C GH + L L+++ SKD+++RLW+
Sbjct: 83 LAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPN--LLLSVSKDHALRLWNI 140
Query: 315 ESRCCVGVGTGHMGAVGAV--AFSKKLQNFLVSGSSDHTIKVWSFD 358
++ V + G G V A L ++S DH++K+W +
Sbjct: 141 QTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRIN 186
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 52/99 (52%), Gaps = 8/99 (8%)
Query: 418 FRGHKRGIWSVEFSPVD-QVVITASGDKTIKIWSISDGSCLKTF---EGHTSSVLRASFL 473
+ GH I ++F P D ++++ S D +++W+I + + F EGH VL A +
Sbjct: 111 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 170
Query: 474 TRGAQIVSCGADGLVKLWTVRTGECI----ATYDKHEDK 508
G +I+SCG D +KLW + + + +YD + +K
Sbjct: 171 LLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNK 209
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 59/145 (40%), Gaps = 23/145 (15%)
Query: 22 CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATL---DKHFSRVT 78
C ++ GH ++ + FHP D +LL S S D +R+W++ VA + H V
Sbjct: 107 CIKHYVGHGNAINELKFHP-RDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVL 165
Query: 79 SMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYN 138
S G ++S G D + LW + + M+ A+ ++D YN
Sbjct: 166 SADYDLLGEKIMSCGMDHSLKLW---------RINSKRMMNAI-----KESYD-----YN 206
Query: 139 QQTIKKKRRSLEIHFITVGERGIVR 163
+ S +IHF R I R
Sbjct: 207 PNKTNRPFISQKIHFPDFSTRDIHR 231
Score = 36.2 bits (82), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Query: 290 TCALS-----SGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLV 344
TCA + S +L V GS+ +R+ + + C+ GH A+ + F + N L+
Sbjct: 74 TCAWTYDSNTSHPLLAVAGSR-GIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLL 132
Query: 345 SGSSDHTIKVWS 356
S S DH +++W+
Sbjct: 133 SVSKDHALRLWN 144
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/112 (20%), Positives = 49/112 (43%), Gaps = 4/112 (3%)
Query: 426 WSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQ-IVSCGA 484
W+ + + ++ A I+I + C+K + GH +++ F R ++S
Sbjct: 77 WTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSK 136
Query: 485 DGLVKLWTVRTGECIATY---DKHEDKIWALAVGKKTEMFATGGSDALVNLW 533
D ++LW ++T +A + + H D++ + E + G D + LW
Sbjct: 137 DHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLW 188
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 4/106 (3%)
Query: 255 LAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDS 314
LAVA + +++ + +M C GH + L L+++ SKD+++RLW+
Sbjct: 88 LAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPN--LLLSVSKDHALRLWNI 145
Query: 315 ESRCCVGVGTGHMGAVGAV--AFSKKLQNFLVSGSSDHTIKVWSFD 358
++ V + G G V A L ++S DH++K+W +
Sbjct: 146 QTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRIN 191
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 52/99 (52%), Gaps = 8/99 (8%)
Query: 418 FRGHKRGIWSVEFSPVD-QVVITASGDKTIKIWSISDGSCLKTF---EGHTSSVLRASFL 473
+ GH I ++F P D ++++ S D +++W+I + + F EGH VL A +
Sbjct: 110 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 169
Query: 474 TRGAQIVSCGADGLVKLWTVRTGECI----ATYDKHEDK 508
G +I+SCG D +KLW + + + +YD + +K
Sbjct: 170 LLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNK 208
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 59/145 (40%), Gaps = 23/145 (15%)
Query: 22 CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATL---DKHFSRVT 78
C ++ GH ++ + FHP D +LL S S D +R+W++ VA + H V
Sbjct: 106 CIKHYVGHGNAINELKFHP-RDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVL 164
Query: 79 SMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYN 138
S G ++S G D + LW + + M+ A+ ++D YN
Sbjct: 165 SADYDLLGEKIMSCGMDHSLKLW---------RINSKRMMNAI-----KESYD-----YN 205
Query: 139 QQTIKKKRRSLEIHFITVGERGIVR 163
+ S +IHF R I R
Sbjct: 206 PNKTNRPFISQKIHFPDFSTRDIHR 230
Score = 36.2 bits (82), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Query: 290 TCALS-----SGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLV 344
TCA + S +L V GS+ +R+ + + C+ GH A+ + F + N L+
Sbjct: 73 TCAWTYDSNTSHPLLAVAGSR-GIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLL 131
Query: 345 SGSSDHTIKVWS 356
S S DH +++W+
Sbjct: 132 SVSKDHALRLWN 143
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/112 (20%), Positives = 49/112 (43%), Gaps = 4/112 (3%)
Query: 426 WSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQ-IVSCGA 484
W+ + + ++ A I+I + C+K + GH +++ F R ++S
Sbjct: 76 WTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSK 135
Query: 485 DGLVKLWTVRTGECIATY---DKHEDKIWALAVGKKTEMFATGGSDALVNLW 533
D ++LW ++T +A + + H D++ + E + G D + LW
Sbjct: 136 DHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLW 187
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 4/106 (3%)
Query: 255 LAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDS 314
LAVA + +++ + +M C GH + L L+++ SKD+++RLW+
Sbjct: 87 LAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPN--LLLSVSKDHALRLWNI 144
Query: 315 ESRCCVGVGTGHMGAVGAV--AFSKKLQNFLVSGSSDHTIKVWSFD 358
++ V + G G V A L ++S DH++K+W +
Sbjct: 145 QTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRIN 190
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 52/99 (52%), Gaps = 8/99 (8%)
Query: 418 FRGHKRGIWSVEFSPVD-QVVITASGDKTIKIWSISDGSCLKTF---EGHTSSVLRASFL 473
+ GH I ++F P D ++++ S D +++W+I + + F EGH VL A +
Sbjct: 110 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 169
Query: 474 TRGAQIVSCGADGLVKLWTVRTGECI----ATYDKHEDK 508
G +I+SCG D +KLW + + + +YD + +K
Sbjct: 170 LLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNK 208
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 59/145 (40%), Gaps = 23/145 (15%)
Query: 22 CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATL---DKHFSRVT 78
C ++ GH ++ + FHP D +LL S S D +R+W++ VA + H V
Sbjct: 106 CIKHYVGHGNAINELKFHP-RDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVL 164
Query: 79 SMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYN 138
S G ++S G D + LW + + M+ A+ ++D YN
Sbjct: 165 SADYDLLGEKIMSCGMDHSLKLW---------RINSKRMMNAI-----KESYD-----YN 205
Query: 139 QQTIKKKRRSLEIHFITVGERGIVR 163
+ S +IHF R I R
Sbjct: 206 PNKTNRPFISQKIHFPDFSTRDIHR 230
Score = 36.2 bits (82), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Query: 290 TCALS-----SGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLV 344
TCA + S +L V GS+ +R+ + + C+ GH A+ + F + N L+
Sbjct: 73 TCAWTYDSNTSHPLLAVAGSR-GIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLL 131
Query: 345 SGSSDHTIKVWS 356
S S DH +++W+
Sbjct: 132 SVSKDHALRLWN 143
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/112 (20%), Positives = 49/112 (43%), Gaps = 4/112 (3%)
Query: 426 WSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQ-IVSCGA 484
W+ + + ++ A I+I + C+K + GH +++ F R ++S
Sbjct: 76 WTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSK 135
Query: 485 DGLVKLWTVRTGECIATY---DKHEDKIWALAVGKKTEMFATGGSDALVNLW 533
D ++LW ++T +A + + H D++ + E + G D + LW
Sbjct: 136 DHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLW 187
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 4/106 (3%)
Query: 255 LAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDS 314
LAVA + +++ + +M C GH + L L+++ SKD+++RLW+
Sbjct: 87 LAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPN--LLLSVSKDHALRLWNI 144
Query: 315 ESRCCVGVGTGHMGAVGAV--AFSKKLQNFLVSGSSDHTIKVWSFD 358
++ V + G G V A L ++S DH++K+W +
Sbjct: 145 QTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRIN 190
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/213 (21%), Positives = 81/213 (38%), Gaps = 14/213 (6%)
Query: 326 HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKD--I 383
H V AV S ++ G +KVW D P N + + +D I
Sbjct: 50 HGEVVCAVTISNPTRHVYTGGKG--CVKVW-------DISHPGNKSPVSQLDCLNRDNYI 100
Query: 384 NSLAVAPNDSLVCTGSQDRTACVWRL--PDLVSVVTFRGHKRGIWSVEFSPVDQVVITAS 441
S + P+ + G + T +W L P +++ SP +V +
Sbjct: 101 RSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCC 160
Query: 442 GDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIAT 501
D I +W + + + ++ F+GHT G ++ + G D V+ W +R G +
Sbjct: 161 SDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQ 220
Query: 502 YDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 534
+D +I++L E A G + V + H
Sbjct: 221 HD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLH 252
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/163 (21%), Positives = 64/163 (39%), Gaps = 19/163 (11%)
Query: 43 DKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWD 102
D + FS D + VWDL + V H + + I++DG+ L + G D V WD
Sbjct: 152 DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWD 211
Query: 103 LRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTI---KKKRRSLEIH------- 152
LR+ + ++ P G + S N + + K + L +H
Sbjct: 212 LREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSL 271
Query: 153 --------FITVGERGIVRMWNAD-SACLYEQKSSDVTISFEM 186
F++ G+ ++ W A +++ K S +S ++
Sbjct: 272 KFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDI 314
Score = 36.6 bits (83), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 41/197 (20%), Positives = 65/197 (32%), Gaps = 48/197 (24%)
Query: 343 LVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDR 402
L+ G T+ +W A P + KA + + +LA++P+ + + D
Sbjct: 112 LIVGGEASTLSIWDLA-----APTP---RIKAELTSSAPACYALAISPDSKVCFSCCSDG 163
Query: 403 TACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEG 462
VW L + V F+GH G ++ S + T D T++ W + +G L+ +
Sbjct: 164 NIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDF 223
Query: 463 ----------------------------------------HTSSVLRASFLTRGAQIVSC 482
H S VL F G VS
Sbjct: 224 TSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVST 283
Query: 483 GADGLVKLWTVRTGECI 499
G D L+ W G I
Sbjct: 284 GKDNLLNAWRTPYGASI 300
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 8 ADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDL 61
+D + VWD+ F+GH S I D K L++G D TVR WDL
Sbjct: 161 SDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTK--LWTGGLDNTVRSWDL 212
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 45/90 (50%)
Query: 413 VSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASF 472
+ + GH+R + V+++ ++ + S D + +W +G L T +GHT ++
Sbjct: 23 MKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDV 82
Query: 473 LTRGAQIVSCGADGLVKLWTVRTGECIATY 502
V+ AD +KLW V G+C+AT+
Sbjct: 83 DCFTKYCVTGSADYSIKLWDVSNGQCVATW 112
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 44/86 (51%)
Query: 376 VAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQ 435
+ H + + + L+ + S+D +A VW + + T GH IWS++ +
Sbjct: 28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTK 87
Query: 436 VVITASGDKTIKIWSISDGSCLKTFE 461
+T S D +IK+W +S+G C+ T++
Sbjct: 88 YCVTGSADYSIKLWDVSNGQCVATWK 113
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Query: 454 GSCLKTFE--GHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWA 511
GS +K + GH + + + G + SC D +W GE + T D H IW+
Sbjct: 20 GSHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWS 79
Query: 512 LAVGKKTEMFATGGSDALVNLW 533
+ V T+ TG +D + LW
Sbjct: 80 IDVDCFTKYCVTGSADYSIKLW 101
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 53/109 (48%), Gaps = 2/109 (1%)
Query: 28 GHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGS 87
GH+ ++ + ++ + D LLFS S D++ VW L + + TLD H + S+ +
Sbjct: 30 GHERPLTQVKYNKEGD--LLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTK 87
Query: 88 TLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSS 136
++ D + LWD+ + C T + V+ V P G+ F + L +
Sbjct: 88 YCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDN 136
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 66/328 (20%), Positives = 125/328 (38%), Gaps = 38/328 (11%)
Query: 234 RLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCAL 293
+L G+ + +K+ E + + + + Y L+ L GH+ + +D
Sbjct: 27 KLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLG-TLDGHTGTIWSIDVDCF 85
Query: 294 SSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLV----SGSSD 349
+ VTGS D S++LWD + CV + V V FS FL +
Sbjct: 86 TK---YCVTGSADYSIKLWDVSNGQCVATWKSPV-PVKRVEFSPCGNYFLAILDNVMKNP 141
Query: 350 HTIKVWSFD------GLSDDAEQPMNLKAKAVVAAHGKDINSLAV-APNDSLVCTGSQDR 402
+I ++ + L+ +E+P++ ++ G D ++A + + G +D
Sbjct: 142 GSINIYEIERDSATHELTKVSEEPIH----KIITHEGLDAATVAGWSTKGKYIIAGHKDG 197
Query: 403 TACVWRLPDLVSVV-TFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFE 461
+ + + V + H++ I ++FSP IT+S D + +S LK +E
Sbjct: 198 KISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE 257
Query: 462 GHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTG---------------ECIATYDKHE 506
T L + +T + + G K T + E I H
Sbjct: 258 --TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHF 315
Query: 507 DKIWALAVGKKTEMFATGGSDALVNLWH 534
+ +A+ + +A+GG D + L H
Sbjct: 316 GPLNTVAISPQGTSYASGGEDGFIRLHH 343
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 62/275 (22%), Positives = 103/275 (37%), Gaps = 52/275 (18%)
Query: 300 IVTGSKDNSVRLWD--SESRCCVGVGTGHMGAVGAVAFS-KKLQNFLVSGSSDHTIKVWS 356
+ T S D ++++++ E+ + TGH G V V ++ K L S S D + +W
Sbjct: 24 LATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK 83
Query: 357 FDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND--SLVCTGSQDRTACVWRLPD--L 412
E+ AV A H +NS+ AP++ L+ S D V +
Sbjct: 84 --------EENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT 135
Query: 413 VSVVTFRGHKRGIWSVEFSPV-------------DQVVITASGDKTIKIWSI-SDGSCL- 457
S + H G+ S ++P + +T D +KIW SD
Sbjct: 136 TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYV 195
Query: 458 --KTFEGHT---------SSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE-----CIAT 501
T EGH+ +VL S+L +Q +C +WT + +
Sbjct: 196 LESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTC------IIWTQDNEQGPWKKTLLK 249
Query: 502 YDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDS 536
+K D +W + + A G D V LW ++
Sbjct: 250 EEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284
Score = 33.1 bits (74), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 34/86 (39%), Gaps = 4/86 (4%)
Query: 415 VVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGS--CLKTFEGHTSSVLRASF 472
VV H I + + T S DKTIKI+ + + + T GH V R +
Sbjct: 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDW 61
Query: 473 LTR--GAQIVSCGADGLVKLWTVRTG 496
G + SC DG V +W G
Sbjct: 62 AHPKFGTILASCSYDGKVLIWKEENG 87
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 39/182 (21%), Positives = 74/182 (40%), Gaps = 23/182 (12%)
Query: 375 VVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVS--VVTFRGHKRGIWSVEFS- 431
+ AH + I+ + + T S D+T ++ + + T GH+ +W V+++
Sbjct: 4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH 63
Query: 432 -PVDQVVITASGDKTIKIWSISDG--SCLKTFEGHTSSVLRASFLTR--GAQIVSCGADG 486
++ + S D + IW +G S + H++SV + G ++ +DG
Sbjct: 64 PKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDG 123
Query: 487 LVKLWTVRTGECIATY--DKHEDKI----WALAV---------GKKTEMFATGGSDALVN 531
V + + + D H + WA A K++ F TGG+D LV
Sbjct: 124 KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVK 183
Query: 532 LW 533
+W
Sbjct: 184 IW 185
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 62/275 (22%), Positives = 103/275 (37%), Gaps = 52/275 (18%)
Query: 300 IVTGSKDNSVRLWD--SESRCCVGVGTGHMGAVGAVAFS-KKLQNFLVSGSSDHTIKVWS 356
+ T S D ++++++ E+ + TGH G V V ++ K L S S D + +W
Sbjct: 26 LATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK 85
Query: 357 FDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND--SLVCTGSQDRTACVWRLPD--L 412
E+ AV A H +NS+ AP++ L+ S D V +
Sbjct: 86 --------EENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT 137
Query: 413 VSVVTFRGHKRGIWSVEFSPV-------------DQVVITASGDKTIKIWSI-SDGSCL- 457
S + H G+ S ++P + +T D +KIW SD
Sbjct: 138 TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYV 197
Query: 458 --KTFEGHT---------SSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE-----CIAT 501
T EGH+ +VL S+L +Q +C +WT + +
Sbjct: 198 LESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTC------IIWTQDNEQGPWKKTLLK 251
Query: 502 YDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDS 536
+K D +W + + A G D V LW ++
Sbjct: 252 EEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 286
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 93/426 (21%), Positives = 165/426 (38%), Gaps = 56/426 (13%)
Query: 2 FALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSG-SDDATVRVWD 60
F + G+DRK+ +D G Y + + V +F S F+ DAT+RVWD
Sbjct: 221 FVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWD 280
Query: 61 LLAKKCVA--TLDKHFSRVTSMAITSDGS-TLISAGRDKVVNLWDLRDYSCKLTVPTYEM 117
+ KCV TLDK + + + G+ +IS D +N ++L T+ +
Sbjct: 281 VTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNK 340
Query: 118 VEAVCAIPP--GSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQ 175
+ P ++D + ++ ++ + +L IV + N+ A Y
Sbjct: 341 GITALTVNPLISGSYDGRIMEWSSSSMHQDHSNL-----------IVSLDNS-KAQEYSS 388
Query: 176 KSSDVTISFE-MDDSKRGFTAATVLPSNQGLLCV-TADQQLLLYTTVEVPEKKMELILSK 233
S D T+ + + G +N G V T D LL+ + ++I S
Sbjct: 389 ISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSF-----TGDIIKSV 443
Query: 234 RLVGYNEEILDLKFLGEEEQYLAVA-TNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCA 292
RL + + Y+AV +QV+ LS + S+ L + + +
Sbjct: 444 RLNSPGSAV------SLSQNYVAVGLEEGNTIQVFKLSDLEVSFDL--KTPLRAKPSYIS 495
Query: 293 LSSGKILIVTGSKDNSVRLWDSESRCCV----GVGTGHMGAVGAVAFSKKL------QNF 342
+S + I G + L+D +SR T + A+ K ++
Sbjct: 496 ISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDL 555
Query: 343 LVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDR 402
+ +GS D I ++S ++PM K + AH +N+L +LV +G+
Sbjct: 556 VATGSLDTNIFIYS-------VKRPM--KIIKALNAHKDGVNNLLWETPSTLVSSGAD-- 604
Query: 403 TACVWR 408
AC+ R
Sbjct: 605 -ACIKR 609
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 60/151 (39%), Gaps = 30/151 (19%)
Query: 376 VAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG------------HKR 423
V+ H + IN+ C Q R + D SVV ++G HK+
Sbjct: 156 VSGHSQRINA----------CHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQ 205
Query: 424 G--IWSVEFSP-VDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTR---GA 477
G + VEFSP + VIT D+ I + G LK E V F
Sbjct: 206 GSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQ 265
Query: 478 QIVSCGADGLVKLWTVRTGECIA--TYDKHE 506
+ + GAD +++W V T +C+ T DK +
Sbjct: 266 KFATVGADATIRVWDVTTSKCVQKWTLDKQQ 296
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 42/106 (39%), Gaps = 7/106 (6%)
Query: 435 QVVITASGDKTIKIWSISDGSCLK--TFEGHTSSVLRASFLTRG-AQIVSCGADGLVKLW 491
Q T D TI++W ++ C++ T + + + G +I+S DG + +
Sbjct: 265 QKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFY 324
Query: 492 TVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDST 537
+ E + T H I AL V +G D + W S+
Sbjct: 325 ELGHDEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSS 366
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/275 (22%), Positives = 103/275 (37%), Gaps = 52/275 (18%)
Query: 300 IVTGSKDNSVRLWD--SESRCCVGVGTGHMGAVGAVAFS-KKLQNFLVSGSSDHTIKVWS 356
+ T S D ++++++ E+ + TGH G V V ++ K L S S D + +W
Sbjct: 24 LATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK 83
Query: 357 FDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND--SLVCTGSQDRTACVWRLPD--L 412
E+ AV A H +NS+ AP++ L+ S D V +
Sbjct: 84 --------EENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT 135
Query: 413 VSVVTFRGHKRGIWSVEFSPV-------------DQVVITASGDKTIKIWSI-SDGSCL- 457
S + H G+ S ++P + +T D +KIW SD
Sbjct: 136 TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYV 195
Query: 458 --KTFEGHT---------SSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE-----CIAT 501
T EGH+ +VL S+L +Q +C +WT + +
Sbjct: 196 LESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTC------IIWTQDNEQGPWKKTLLK 249
Query: 502 YDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDS 536
+K D +W + + A G D V LW ++
Sbjct: 250 EEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 66/283 (23%), Positives = 107/283 (37%), Gaps = 64/283 (22%)
Query: 300 IVTGSKDNSVRLWDSESRCCVGVGT--GHMGAVGAVAFSKKLQ-NFLVSGSSDHTIKVWS 356
+ T S D SV+++D + + + GH G V VA++ + N L S S D + +W
Sbjct: 28 LATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87
Query: 357 FDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDS--LVCTGSQDRTACVWRLPDLVS 414
E+ + A H +NS+ AP+D ++ GS D +S
Sbjct: 88 --------EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGA---------IS 130
Query: 415 VVTFRG------------HKRGIWSVEFSPV---------------DQVVITASG--DKT 445
++T+ G H G +V ++P + + ASG D
Sbjct: 131 LLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNL 190
Query: 446 IKIWSISDGSCLK---TFEGHTSSVLRASFLTR----GAQIVSCGADGLVKLWTVRTGEC 498
IK+W + K E H+ V ++ + I SC DG V +WT
Sbjct: 191 IKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASS 250
Query: 499 IATYD-----KHEDKIWALAVGKKTEMFATGGSDALVNLWHDS 536
T+ K D +W ++ + A G D V LW +S
Sbjct: 251 -NTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292
>pdb|3GRE|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Vps15 Wd
Repeat Domain
Length = 437
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 96/227 (42%), Gaps = 35/227 (15%)
Query: 152 HFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTAD 211
+ IT ++G++++WN + E SS +T D T T++P+ + D
Sbjct: 78 YLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-----DCSSTVTQITMIPNFDAFAVSSKD 132
Query: 212 QQLLLYTT------VEVPEKKMELI--LSKRLVGYNEEILDLK-FLGEEEQYLAVATNIE 262
Q+++ EV E I ++ + G NE + ++ F+ EE+ L TN+
Sbjct: 133 GQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLS 192
Query: 263 QVQVYDLSSMSCSYVLAG---HSEI-VLCLD--TCALSSGKILIVTGSKDNSVRLWDSES 316
+V ++D+ ++ ++ H + +C+D C L + G+ + +WD
Sbjct: 193 RVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVL-------ILGTTRGIIDIWD--I 243
Query: 317 RCCVGVGTGHMG------AVGAVAFSKKLQNFLVSGSSDHTIKVWSF 357
R V + + G V F K +V GSS + +W+F
Sbjct: 244 RFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNF 290
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 4/106 (3%)
Query: 2 FALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSG-SDDATVRVWD 60
F + G+DRK+ +D G Y + + V +F S F+ DAT+RVWD
Sbjct: 221 FVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWD 280
Query: 61 LLAKKCVA--TLDKHFSRVTSMAITSDGS-TLISAGRDKVVNLWDL 103
+ KCV TLDK + + + G+ +IS D +N ++L
Sbjct: 281 VTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 326
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 60/151 (39%), Gaps = 30/151 (19%)
Query: 376 VAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG------------HKR 423
V+ H + IN+ C Q R + D SVV ++G HK+
Sbjct: 156 VSGHSQRINA----------CHLKQSRPXRSXTVGDDGSVVFYQGPPFKFSASDRTHHKQ 205
Query: 424 G--IWSVEFSP-VDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTR---GA 477
G + VEFSP + VIT D+ I + G LK E V F
Sbjct: 206 GSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQ 265
Query: 478 QIVSCGADGLVKLWTVRTGECIA--TYDKHE 506
+ + GAD +++W V T +C+ T DK +
Sbjct: 266 KFATVGADATIRVWDVTTSKCVQKWTLDKQQ 296
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 40/102 (39%), Gaps = 7/102 (6%)
Query: 435 QVVITASGDKTIKIWSISDGSCLK--TFEGHTSSVLRASFLTRG-AQIVSCGADGLVKLW 491
Q T D TI++W ++ C++ T + + + G +I+S DG + +
Sbjct: 265 QKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFY 324
Query: 492 TVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 533
+ E + T H I AL V +G D + W
Sbjct: 325 ELGHDEVLKTISGHNKGITALTVNP----LISGSYDGRIXEW 362
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 60/270 (22%), Positives = 102/270 (37%), Gaps = 42/270 (15%)
Query: 300 IVTGSKDNSVRLWD--SESRCCVGVGTGHMGAVGAVAFS-KKLQNFLVSGSSDHTIKVWS 356
+ T S D ++++++ E+ + TGH G V V ++ K L S S D + +W
Sbjct: 24 MATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWK 83
Query: 357 FDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND--SLVCTGSQDRTACVWRLPD--L 412
E+ AV A H +NS+ AP++ ++ S D V +
Sbjct: 84 --------EENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGT 135
Query: 413 VSVVTFRGHKRGIWSVEFSPV-------------DQVVITASGDKTIKIWSI-SDGSCL- 457
S + H G+ S ++P + +T D +KIW SD
Sbjct: 136 TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYV 195
Query: 458 --KTFEGHTSSVLRASF----LTRGAQIVSCGADGLVKLWTVRTGE-----CIATYDKHE 506
T EGH+ V ++ L R + + S D +WT + + +K
Sbjct: 196 LESTLEGHSDWVRDVAWSPTVLLR-SYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFP 254
Query: 507 DKIWALAVGKKTEMFATGGSDALVNLWHDS 536
D +W + + A G D V LW ++
Sbjct: 255 DVLWRASWSLSGNVLALSGGDNKVTLWKEN 284
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 50/221 (22%), Positives = 89/221 (40%), Gaps = 27/221 (12%)
Query: 300 IVTGSKDNSVRLWD----SESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVW 355
+ GSK + LW+ + G+G G G++ + F+ N + S + T ++
Sbjct: 135 VAVGSKGGDIMLWNFGIKDKPTFIKGIGAG--GSITGLKFNPLNTNQFYASSMEGTTRLQ 192
Query: 356 SFDGLSDDAEQPMNLKAKAVVAAHGKDIN----SLAVAPNDSLVCTGSQDRTACVWRLPD 411
F G N+ V A IN SL V+ + +V TG + + D
Sbjct: 193 DFKG---------NI---LRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNM-D 239
Query: 412 LVSVVTFRGHKRGIWSVEFSPV-DQVVITASGDKTIKIWSISDGSCLKTF---EGHTSSV 467
+ R HK+ + V +P D + TAS D+T+KIW + +F H V
Sbjct: 240 GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPV 299
Query: 468 LRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDK 508
A F GA++++ +++++ +C H +
Sbjct: 300 NAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHR 340
Score = 32.7 bits (73), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Query: 26 FKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATL---DKHFSRVTSMAI 82
+ HK V+ + +P D L + S D TV++WDL + A+ H V +
Sbjct: 246 LRMHKKKVTHVALNPCCD-WFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACF 304
Query: 83 TSDGSTLISAGRDKVVNLWDLRDYSCKL 110
+ DG+ L++ + + ++ + C L
Sbjct: 305 SPDGARLLTTDQKSEIRVYSASQWDCPL 332
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 50/221 (22%), Positives = 89/221 (40%), Gaps = 27/221 (12%)
Query: 300 IVTGSKDNSVRLWD----SESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVW 355
+ GSK + LW+ + G+G G G++ + F+ N + S + T ++
Sbjct: 135 VAVGSKGGDIMLWNFGIKDKPTFIKGIGAG--GSITGLKFNPLNTNQFYASSMEGTTRLQ 192
Query: 356 SFDGLSDDAEQPMNLKAKAVVAAHGKDIN----SLAVAPNDSLVCTGSQDRTACVWRLPD 411
F G N+ V A IN SL V+ + +V TG + + D
Sbjct: 193 DFKG---------NI---LRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNM-D 239
Query: 412 LVSVVTFRGHKRGIWSVEFSPV-DQVVITASGDKTIKIWSISDGSCLKTF---EGHTSSV 467
+ R HK+ + V +P D + TAS D+T+KIW + +F H V
Sbjct: 240 GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPV 299
Query: 468 LRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDK 508
A F GA++++ +++++ +C H +
Sbjct: 300 NAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHR 340
Score = 32.7 bits (73), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Query: 26 FKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATL---DKHFSRVTSMAI 82
+ HK V+ + +P D L + S D TV++WDL + A+ H V +
Sbjct: 246 LRMHKKKVTHVALNPCCD-WFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACF 304
Query: 83 TSDGSTLISAGRDKVVNLWDLRDYSCKL 110
+ DG+ L++ + + ++ + C L
Sbjct: 305 SPDGARLLTTDQKSEIRVYSASQWDCPL 332
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 50/221 (22%), Positives = 89/221 (40%), Gaps = 27/221 (12%)
Query: 300 IVTGSKDNSVRLWD----SESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVW 355
+ GSK + LW+ + G+G G G++ + F+ N + S + T ++
Sbjct: 136 VAVGSKGGDIMLWNFGIKDKPTFIKGIGAG--GSITGLKFNPLNTNQFYASSMEGTTRLQ 193
Query: 356 SFDGLSDDAEQPMNLKAKAVVAAHGKDIN----SLAVAPNDSLVCTGSQDRTACVWRLPD 411
F G N+ V A IN SL V+ + +V TG + + D
Sbjct: 194 DFKG---------NI---LRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNM-D 240
Query: 412 LVSVVTFRGHKRGIWSVEFSPV-DQVVITASGDKTIKIWSISDGSCLKTF---EGHTSSV 467
+ R HK+ + V +P D + TAS D+T+KIW + +F H V
Sbjct: 241 GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPV 300
Query: 468 LRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDK 508
A F GA++++ +++++ +C H +
Sbjct: 301 NAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHR 341
Score = 32.3 bits (72), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 29 HKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATL---DKHFSRVTSMAITSD 85
HK V+ + +P D L + S D TV++WDL + A+ H V + + D
Sbjct: 250 HKKKVTHVALNPCCD-WFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPD 308
Query: 86 GSTLISAGRDKVVNLWDLRDYSCKL 110
G+ L++ + + ++ + C L
Sbjct: 309 GARLLTTDQKSEIRVYSASQWDCPL 333
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 59/139 (42%), Gaps = 24/139 (17%)
Query: 394 LVCTGSQDRTACVWRLPDLVSVVTFR------GHKRGIWSVEFSPVDQVVITAS------ 441
L+ TG + T + L L + F + I SV+FSP ++ A
Sbjct: 209 LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFG 268
Query: 442 ---------GDK--TIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKL 490
G++ ++ + + S + L F H+S V+ SF G + S G DG ++
Sbjct: 269 CITLYETEFGERIGSLSVPTHSSQASLGEF-AHSSWVMSLSFNDSGETLCSAGWDGKLRF 327
Query: 491 WTVRTGECIATYDKHEDKI 509
W V+T E I T + H D I
Sbjct: 328 WDVKTKERITTLNMHCDDI 346
Score = 29.3 bits (64), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 73 HFSRVTSMAITSDGSTLISAGRDKVVNLWDLR 104
H S V S++ G TL SAG D + WD++
Sbjct: 300 HSSWVMSLSFNDSGETLCSAGWDGKLRFWDVK 331
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 59/139 (42%), Gaps = 24/139 (17%)
Query: 394 LVCTGSQDRTACVWRLPDLVSVVTFR------GHKRGIWSVEFSPVDQVVITAS------ 441
L+ TG + T + L L + F + I SV+FSP ++ A
Sbjct: 199 LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFG 258
Query: 442 ---------GDK--TIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKL 490
G++ ++ + + S + L F H+S V+ SF G + S G DG ++
Sbjct: 259 CITLYETEFGERIGSLSVPTHSSQASLGEF-AHSSWVMSLSFNDSGETLCSAGWDGKLRF 317
Query: 491 WTVRTGECIATYDKHEDKI 509
W V+T E I T + H D I
Sbjct: 318 WDVKTKERITTLNMHCDDI 336
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 438 ITASGDKTIKIWSISDGSCLKTFEGHTSSV-LRASFLTRGAQIVSCGADGLVKLWTVR 494
++ D ++K+W +S + LK++ H+S V A+ + +SCG DG + LW R
Sbjct: 155 VSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTR 212
Score = 37.0 bits (84), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 69/164 (42%), Gaps = 42/164 (25%)
Query: 42 TDKSLLFSGSDDATVRVWDLLAKKCVATLD----KHFSRVTSMAITSDGSTLISAGRDKV 97
++K +L + SD V +W++L K+ + +H V ++++ SDG+ +S G+D
Sbjct: 104 SEKGILVA-SDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFS 162
Query: 98 VNLWDLRDYSCKLTVPTYEM----VEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHF 153
V +WDL S K + +Y V V A P + TI F
Sbjct: 163 VKVWDL---SQKAVLKSYNAHSSEVNCVAACP------------GKDTI----------F 197
Query: 154 ITVGERGIVRMWNADSA--------CLYEQKSSDVTISFEMDDS 189
++ GE G + +W+ C + + VT E DD+
Sbjct: 198 LSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDT 241
Score = 36.2 bits (82), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 9/104 (8%)
Query: 437 VITASGDKTIKIWSISDGSCL-----KTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLW 491
++ AS +++W I + L +E H V S + G Q VS G D VK+W
Sbjct: 108 ILVASDSGAVELWEILEKESLLVNKFAKYE-HDDIVKTLSVFSDGTQAVSGGKDFSVKVW 166
Query: 492 TVRTGECIATYDKHEDKIWALAV--GKKTEMFATGGSDALVNLW 533
+ + +Y+ H ++ +A GK T +F + G D + LW
Sbjct: 167 DLSQKAVLKSYNAHSSEVNCVAACPGKDT-IFLSCGEDGRILLW 209
Score = 29.3 bits (64), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 47/108 (43%), Gaps = 7/108 (6%)
Query: 252 EQYLAVATNIEQVQVYDL----SSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDN 307
E+ + VA++ V+++++ S + + H +IV L ++ S V+G KD
Sbjct: 105 EKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTL---SVFSDGTQAVSGGKDF 161
Query: 308 SVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVW 355
SV++WD + + H V VA +S D I +W
Sbjct: 162 SVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLW 209
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 60/268 (22%), Positives = 102/268 (38%), Gaps = 42/268 (15%)
Query: 302 TGSKDNSVRLWD--SESRCCVGVGTGHMGAVGAVAFS-KKLQNFLVSGSSDHTIKVWSFD 358
T S D ++++++ E+ + TGH G V V ++ K L S S D + +W
Sbjct: 26 TCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVXIWK-- 83
Query: 359 GLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND---SLVCTGSQDRTACV-WRLPDLVS 414
E+ AV A H +NS+ AP++ L+ S + + V ++ S
Sbjct: 84 ------EENGRWSQIAVHAVHSASVNSVQWAPHEYGPXLLVASSDGKVSVVEFKENGTTS 137
Query: 415 VVTFRGHKRGIWSVEFSPV-------------DQVVITASGDKTIKIWSI-SDGSCL--- 457
+ H G+ S ++P + +T D +KIW SD
Sbjct: 138 PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLE 197
Query: 458 KTFEGHTSSVLRASF----LTRGAQIVSCGADGLVKLWTVRTGE-----CIATYDKHEDK 508
T EGH+ V ++ L R + S D +WT + + +K D
Sbjct: 198 STLEGHSDWVRDVAWSPTVLLR-SYXASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDV 256
Query: 509 IWALAVGKKTEMFATGGSDALVNLWHDS 536
+W + + A G D V LW ++
Sbjct: 257 LWRASWSLSGNVLALSGGDNKVTLWKEN 284
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 300 IVTGSKDNSVRLW----DSESRCCVGVGTGHMGAVGAVAFSKK--LQNFLVSGSSDHTIK 353
VTG DN V++W D+++ GH V VA+S L+++ S S D T
Sbjct: 173 FVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYXASVSQDRTCI 232
Query: 354 VWSFD 358
+W+ D
Sbjct: 233 IWTQD 237
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 45/229 (19%), Positives = 96/229 (41%), Gaps = 31/229 (13%)
Query: 299 LIVTGSKDNSVRLWDSESRCC----------VGVGTGHMGAVGAVAFSKKLQNFLVSGSS 348
++ +G + + +WD ++C G + V ++A+++ L + S S
Sbjct: 128 VLASGGNNGEIFIWDM-NKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGS 186
Query: 349 DHTIKVWSFDG------LSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGS-QD 401
+ +W LS + + +VV H K+ +A A TGS D
Sbjct: 187 SNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATA-------TGSDND 239
Query: 402 RTACVWRLPDLVSVVTF--RGHKRGIWSVEFSPVDQVVITASG-DKTIKIWSISDGSCLK 458
+ +W L + + + +GH++GI S+++ D+ ++ +SG D T+ +W+ L
Sbjct: 240 PSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLS 299
Query: 459 TFEGHTSSVLRASFLTRGAQIVSCGA-DGLVKLWTVRTGECIATYDKHE 506
F + + F + +C + D +++ T++ T D+ E
Sbjct: 300 QFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQN--LTNTLDEQE 346
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 66/320 (20%), Positives = 133/320 (41%), Gaps = 29/320 (9%)
Query: 51 SDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKL 110
S D+++ +W LLA A +K + S+ + S + L + +K++ L + S +L
Sbjct: 42 STDSSLELWSLLA----ADSEK---PIASLQVDSKFNDLDWSHNNKII-AGALDNGSLEL 93
Query: 111 TVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSA 170
Y EA AI + F + SS +T+K + + + G G + +W+ +
Sbjct: 94 ----YSTNEANNAINSMARFSNHSSSV--KTVKFNAKQDNV-LASGGNNGEIFIWDMNKC 146
Query: 171 CLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELI 230
+ +T M + A NQ L V A + ++ + K E+I
Sbjct: 147 TESPSNYTPLTPGQSMSSVDEVISLAW----NQSLAHVFASAGSSNFASIWDLKAKKEVI 202
Query: 231 ---LSKRLVGYNEEILDLKFLGEEEQYLAVAT---NIEQVQVYDLSSMSCSY--VLAGHS 282
+ G +++ +++ + +A AT N + ++DL + + + GH
Sbjct: 203 HLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQ 262
Query: 283 EIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNF 342
+ +L LD C + L+++ +DN+V LW+ ES + F+ + +
Sbjct: 263 KGILSLDWC--HQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDL 320
Query: 343 LVSGSSDHTIKVWSFDGLSD 362
S D+ I+V + L++
Sbjct: 321 FACASFDNKIEVQTLQNLTN 340
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 15/121 (12%)
Query: 242 ILDLKFLGEEEQYLAVATNIEQVQVYDLS-------SMSCSYVLAGHSEIVLCLDTCALS 294
+ DL ++GE + + VA++ V++++L S C Y H +IV T ++
Sbjct: 85 VADLTWVGE--RGILVASDSGAVELWELDENETLIVSKFCKY---EHDDIV---STVSVL 136
Query: 295 SGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKV 354
S V+GSKD +++WD + + H V VA S + +S S D+ I +
Sbjct: 137 SSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILL 196
Query: 355 W 355
W
Sbjct: 197 W 197
Score = 36.6 bits (83), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 49 SGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITS-DGSTLISAGRDKVVNLWDLR 104
SGS D ++VWDL + +++ H ++VT +A + S +S D + LWD R
Sbjct: 144 SGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTR 200
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 44/102 (43%), Gaps = 5/102 (4%)
Query: 437 VITASGDKTIKIWSISDGSCLKTFE----GHTSSVLRASFLTRGAQIVSCGADGLVKLWT 492
++ AS +++W + + L + H V S L+ G Q VS D +K+W
Sbjct: 96 ILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWD 155
Query: 493 VRTGECIATYDKHEDKIWALAVGK-KTEMFATGGSDALVNLW 533
+ +++Y H ++ +A K +F + D + LW
Sbjct: 156 LAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLW 197
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/162 (19%), Positives = 62/162 (38%), Gaps = 41/162 (25%)
Query: 437 VITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVR-- 494
++T D I ++ ++T + SS L A R +I++ + G +K+W R
Sbjct: 163 IVTVGEDGRINLFRADHKEAVRTIDNADSSTLHAVTFLRTPEILTVNSIGQLKIWDFRQQ 222
Query: 495 ----------TGECIATY--DKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTXXXXX 542
TG+ + + D+H ++ + ATGG D ++++W
Sbjct: 223 GNEPSQILSLTGDRVPLHCVDRHPNQ---------QHVVATGGQDGMLSIWD-------- 265
Query: 543 XXXXXXXXXVLRGQELENAVLDADYTKAIQVAFELRRPHKLF 584
+R + ++L A + +V F P LF
Sbjct: 266 ----------VRQGTMPVSLLKAHEAEMWEVHFHPSNPEHLF 297
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 63/322 (19%), Positives = 139/322 (43%), Gaps = 53/322 (16%)
Query: 253 QYLAVATNIEQVQVYDLSSMSCSYVLA----GHSEIVLCLDTCALSSGKILIVTGSKDNS 308
+++A ++ + ++V+ L + ++ L+ H ++ +D + G+I I + S D +
Sbjct: 24 RHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRI-IASASYDKT 82
Query: 309 VRLW--DSESRCCVGVGTGHM-------GAVGAVAFSK-KLQNFLVSGSSDHTIKVWSFD 358
V+LW D + C G + G++ +V F+ L L +D ++++
Sbjct: 83 VKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLY--- 139
Query: 359 GLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSL-----------------VCTGSQD 401
DA +P +L++ + + ++ L++ P + L + + +
Sbjct: 140 ----DALEPSDLRSWTLTS----EMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALE 191
Query: 402 RTACVWRLPD--LVSVVTFRGHKRGIWSVEFSPV----DQVVITASGDKTIKIWSISDG- 454
+ R D L GHK I S+ ++P Q++ T D I+I+ I++
Sbjct: 192 QAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKL 251
Query: 455 SCLKTFEGHTSSVL--RASFLTRGAQIVS-CGADGLVKLWTVRTGECIATYDKHEDKIWA 511
S L + E T+S + ++ + AQ S + +L + E ++ +D H ++W+
Sbjct: 252 SPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWS 311
Query: 512 LAVGKKTEMFATGGSDALVNLW 533
++ + ++ G D V LW
Sbjct: 312 VSWNLTGTILSSAGDDGKVRLW 333
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 63/322 (19%), Positives = 139/322 (43%), Gaps = 53/322 (16%)
Query: 253 QYLAVATNIEQVQVYDLSSMSCSYVLA----GHSEIVLCLDTCALSSGKILIVTGSKDNS 308
+++A ++ + ++V+ L + ++ L+ H ++ +D + G+I I + S D +
Sbjct: 22 RHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRI-IASASYDKT 80
Query: 309 VRLW--DSESRCCVGVGTGHM-------GAVGAVAFSK-KLQNFLVSGSSDHTIKVWSFD 358
V+LW D + C G + G++ +V F+ L L +D ++++
Sbjct: 81 VKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLY--- 137
Query: 359 GLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSL-----------------VCTGSQD 401
DA +P +L++ + + ++ L++ P + L + + +
Sbjct: 138 ----DALEPSDLRSWTLTS----EMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALE 189
Query: 402 RTACVWRLPD--LVSVVTFRGHKRGIWSVEFSPV----DQVVITASGDKTIKIWSISDG- 454
+ R D L GHK I S+ ++P Q++ T D I+I+ I++
Sbjct: 190 QAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKL 249
Query: 455 SCLKTFEGHTSSVL--RASFLTRGAQIVS-CGADGLVKLWTVRTGECIATYDKHEDKIWA 511
S L + E T+S + ++ + AQ S + +L + E ++ +D H ++W+
Sbjct: 250 SPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWS 309
Query: 512 LAVGKKTEMFATGGSDALVNLW 533
++ + ++ G D V LW
Sbjct: 310 VSWNLTGTILSSAGDDGKVRLW 331
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 32.7 bits (73), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 67/340 (19%), Positives = 146/340 (42%), Gaps = 58/340 (17%)
Query: 237 GYNEEILDL--KFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLA----GHSEIVLCLDT 290
G+++ + D+ F G +++A ++ + ++V+ L + ++ L+ H ++ +D
Sbjct: 9 GHDDLVHDVVYDFYG---RHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDW 65
Query: 291 CALSSGKILIVTGSKDNSVRLW--DSESRCCVGVGTGHM-------GAVGAVAFSK-KLQ 340
+ G+I I + S D +V+LW D + C G + G++ +V F+ L
Sbjct: 66 ASPEYGRI-IASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLG 124
Query: 341 NFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSL------ 394
L +D ++++ DA +P +L++ + + + L++ P + L
Sbjct: 125 LKLACLGNDGILRLY-------DALEPSDLRSWTLTS----EXKVLSIPPANHLQSDFCL 173
Query: 395 -----------VCTGSQDRTACVWRLPD--LVSVVTFRGHKRGIWSVEFSPV----DQVV 437
+ + ++ R D L GHK I S+ ++P Q++
Sbjct: 174 SWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLI 233
Query: 438 ITASGDKTIKIWSISDG-SCLKTFEGHTSSVL--RASFLTRGAQIVS-CGADGLVKLWTV 493
T D I+I+ I++ S L + E T+S ++ + AQ S + +L +
Sbjct: 234 ATGCKDGRIRIFKITEKLSPLASEESLTNSNXFDNSADVDXDAQGRSDSNTEEKAELQSN 293
Query: 494 RTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 533
E ++ +D H ++W+++ + ++ G D V LW
Sbjct: 294 LQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLW 333
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 55/135 (40%), Gaps = 16/135 (11%)
Query: 277 VLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSE--SRCCVGVGTGHMGAVGAVA 334
V + + + CL + ++ GS N VR W+ + + H G V V
Sbjct: 34 VTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVC 93
Query: 335 FSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLA--VAPND 392
+S + + S D T K+W D S+ A Q +A H + ++ APN
Sbjct: 94 WSDDGSK-VFTASCDKTAKMW--DLSSNQAIQ---------IAQHDAPVKTIHWIKAPNY 141
Query: 393 SLVCTGSQDRTACVW 407
S V TGS D+T W
Sbjct: 142 SCVMTGSWDKTLKFW 156
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
Query: 33 VSSILFHPDT-DKSLLFSGSDDATVRVWDLL--AKKCVATLDKHFSRVTSMAITSDGSTL 89
+ + F P T + L +GS VR W++ + H V + + DGS +
Sbjct: 42 IGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKV 101
Query: 90 ISAGRDKVVNLWDL 103
+A DK +WDL
Sbjct: 102 FTASCDKTAKMWDL 115
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 45/114 (39%), Gaps = 10/114 (8%)
Query: 428 VEFSPV---DQVVITASGDKTIKIWSISDG--SCLKTFEGHTSSVLRASFLTRGAQIVSC 482
+ FSP +I S ++ W + D + K + HT VL + G+++ +
Sbjct: 45 LSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTA 104
Query: 483 GADGLVKLWTVRTGEC--IATYDKHEDKI-WALAVGKKTEMFATGGSDALVNLW 533
D K+W + + + IA +D I W A M TG D + W
Sbjct: 105 SCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVM--TGSWDKTLKFW 156
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 251 EEQYLAVATNIEQVQVYDLSSMSCS-YVLAGHSEIVLCLDTCALSSGKIL---IVTGSKD 306
+++YLA + +++L + Y + GH EI+ +D IVTGS+D
Sbjct: 79 QQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRD 138
Query: 307 NSVRLWDSESR 317
+V++WD +
Sbjct: 139 GTVKVWDPRQK 149
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 52/241 (21%), Positives = 96/241 (39%), Gaps = 59/241 (24%)
Query: 328 GAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLA 387
G GA + Q +L +G + +W+ + E P+ V H + IN++
Sbjct: 71 GTFGATSLQ---QRYLATGDFGGNLHIWNLEA----PEMPV-----YSVKGHKEIINAID 118
Query: 388 V---------APNDSLVCTGSQDRTACVW--RLPD--LVSVVTFRG-HKRGIWSVEFSPV 433
AP + TGS+D T VW R D + ++ +G +KR W+V F
Sbjct: 119 GIGGLGIGEGAPE---IVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNA 175
Query: 434 ----DQVVITASGDKTIKIW-----------SISDGSCLKTFEGHTSSVLRASFLTRGAQ 478
++VV + IK++ +I +G C F+ S+ +
Sbjct: 176 YNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISM---------NK 226
Query: 479 IVSCGADGLVKLWTVRT-----GECIATYDKHEDKIWALA-VGKKTEMFATGGSDALVNL 532
+V+ +G ++ +RT G + H+ +W + + + E+F T G ++L
Sbjct: 227 LVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHL 286
Query: 533 W 533
W
Sbjct: 287 W 287
>pdb|3NOW|A Chain A, Unc-45 From Drosophila Melanogaster
Length = 810
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 51/116 (43%), Gaps = 10/116 (8%)
Query: 252 EQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRL 311
+ LA+AT +++Q ++C ++A S+ C + + SK++ +R+
Sbjct: 293 QMILAMATTDDELQ----QRVACECLIAASSKKDKAKALCEQGVDILKRLYHSKNDGIRV 348
Query: 312 WDSESRCCVGVGTGHMGAV------GAVAFSKKLQNFLVSGSSDHTIKVWSFDGLS 361
C +G G A+ A+ ++ + FL+ D I+ W+ DGL+
Sbjct: 349 RALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLA 404
>pdb|3A1Y|G Chain G, The Structure Of Protein Complex
Length = 284
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 590 VCRKREAELQIEKALHALGKEEIRQLLEYV 619
V R EL I+KA LGK E+ +L+EY+
Sbjct: 54 VSRNTLIELAIKKAAKELGKPELEKLVEYI 83
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,174,908
Number of Sequences: 62578
Number of extensions: 838394
Number of successful extensions: 4048
Number of sequences better than 100.0: 104
Number of HSP's better than 100.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 1994
Number of HSP's gapped (non-prelim): 760
length of query: 768
length of database: 14,973,337
effective HSP length: 106
effective length of query: 662
effective length of database: 8,340,069
effective search space: 5521125678
effective search space used: 5521125678
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)