Query 004214
Match_columns 768
No_of_seqs 1179 out of 4184
Neff 10.9
Searched_HMMs 46136
Date Thu Mar 28 19:31:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004214.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004214hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0319 WD40-repeat-containing 100.0 9.1E-99 2E-103 750.8 58.0 651 2-692 119-774 (775)
2 KOG0306 WD40-repeat-containing 100.0 8.8E-69 1.9E-73 535.8 52.7 678 2-698 79-860 (888)
3 KOG0291 WD40-repeat-containing 100.0 1.5E-62 3.2E-67 491.5 60.3 636 2-691 69-857 (893)
4 KOG0319 WD40-repeat-containing 100.0 1.4E-54 3E-59 434.3 49.4 488 2-542 76-583 (775)
5 KOG0271 Notchless-like WD40 re 100.0 4.4E-56 9.5E-61 411.0 28.5 369 21-534 106-479 (480)
6 KOG0271 Notchless-like WD40 re 100.0 4.4E-50 9.5E-55 371.2 22.6 345 2-492 129-479 (480)
7 KOG0318 WD40 repeat stress pro 100.0 3E-45 6.4E-50 353.2 53.4 492 1-536 72-602 (603)
8 KOG0291 WD40-repeat-containing 100.0 4.8E-45 1E-49 366.1 56.7 483 7-540 32-554 (893)
9 KOG0318 WD40 repeat stress pro 100.0 7.6E-45 1.7E-49 350.4 54.3 484 6-541 35-565 (603)
10 KOG0306 WD40-repeat-containing 100.0 1E-44 2.2E-49 363.6 49.2 482 4-539 37-625 (888)
11 KOG0310 Conserved WD40 repeat- 100.0 1.2E-46 2.7E-51 360.5 30.9 430 236-687 23-482 (487)
12 KOG1408 WD40 repeat protein [F 100.0 1.6E-44 3.4E-49 359.3 42.2 519 4-540 52-717 (1080)
13 KOG1539 WD repeat protein [Gen 100.0 8.5E-43 1.8E-47 354.2 53.9 488 2-534 126-646 (910)
14 KOG0272 U4/U6 small nuclear ri 100.0 1.2E-45 2.5E-50 346.9 24.2 287 234-534 170-458 (459)
15 KOG0272 U4/U6 small nuclear ri 100.0 3.6E-43 7.7E-48 330.2 23.6 284 27-492 172-458 (459)
16 KOG0286 G-protein beta subunit 100.0 3.5E-41 7.5E-46 301.8 34.7 294 23-492 48-343 (343)
17 KOG0286 G-protein beta subunit 100.0 9.4E-40 2E-44 292.7 35.1 291 228-534 44-343 (343)
18 KOG0279 G protein beta subunit 100.0 1.8E-39 3.9E-44 289.2 32.7 291 229-536 5-313 (315)
19 KOG0279 G protein beta subunit 100.0 5.2E-39 1.1E-43 286.3 33.7 292 21-494 6-313 (315)
20 KOG0315 G-protein beta subunit 100.0 6.3E-39 1.4E-43 280.6 32.0 294 43-515 9-309 (311)
21 KOG0273 Beta-transducin family 100.0 4.5E-39 9.8E-44 306.6 32.9 244 277-536 271-523 (524)
22 KOG0315 G-protein beta subunit 100.0 1.2E-38 2.6E-43 278.9 32.0 295 1-473 11-309 (311)
23 KOG0296 Angio-associated migra 100.0 2.1E-38 4.6E-43 292.8 33.0 331 22-536 56-398 (399)
24 KOG0273 Beta-transducin family 100.0 1.7E-37 3.6E-42 295.9 29.4 308 2-494 193-523 (524)
25 KOG0295 WD40 repeat-containing 100.0 3.3E-38 7.1E-43 291.2 23.8 290 231-535 100-405 (406)
26 KOG0295 WD40 repeat-containing 100.0 6.2E-38 1.3E-42 289.5 24.4 291 22-493 100-405 (406)
27 KOG0263 Transcription initiati 100.0 2.1E-37 4.6E-42 314.9 27.9 247 264-524 433-703 (707)
28 KOG1539 WD repeat protein [Gen 100.0 2E-35 4.4E-40 300.7 40.9 443 3-495 175-649 (910)
29 KOG0263 Transcription initiati 100.0 1.1E-37 2.4E-42 317.0 23.0 274 239-538 378-651 (707)
30 KOG0284 Polyadenylation factor 100.0 5E-38 1.1E-42 294.1 17.7 286 238-538 95-382 (464)
31 KOG1408 WD40 repeat protein [F 100.0 1.3E-35 2.8E-40 296.0 34.0 482 2-495 92-714 (1080)
32 KOG0285 Pleiotropic regulator 100.0 2.4E-36 5.2E-41 277.8 26.4 289 22-494 143-439 (460)
33 KOG1063 RNA polymerase II elon 100.0 2.7E-34 5.8E-39 286.7 40.7 494 3-538 27-650 (764)
34 KOG0276 Vesicle coat complex C 100.0 1.9E-34 4.2E-39 283.9 39.0 412 24-539 7-493 (794)
35 KOG0281 Beta-TrCP (transducin 100.0 2.5E-37 5.4E-42 283.0 15.0 276 239-540 197-481 (499)
36 KOG0265 U5 snRNP-specific prot 100.0 3.9E-35 8.5E-40 264.3 28.8 287 232-533 40-335 (338)
37 KOG0265 U5 snRNP-specific prot 100.0 3.7E-35 8.1E-40 264.4 28.6 286 24-491 41-335 (338)
38 KOG0285 Pleiotropic regulator 100.0 3.3E-35 7.1E-40 270.4 26.4 292 228-536 140-439 (460)
39 KOG0284 Polyadenylation factor 100.0 2.3E-36 5.1E-41 283.0 18.4 282 29-451 95-379 (464)
40 KOG0296 Angio-associated migra 100.0 1.8E-34 3.9E-39 266.8 30.6 317 2-494 78-398 (399)
41 KOG0645 WD40 repeat protein [G 100.0 1.2E-33 2.6E-38 251.0 33.3 290 22-494 6-311 (312)
42 KOG2106 Uncharacterized conser 100.0 2.3E-32 5E-37 262.8 44.5 461 11-535 135-625 (626)
43 KOG0276 Vesicle coat complex C 100.0 5.3E-35 1.1E-39 287.9 27.0 285 233-531 7-294 (794)
44 KOG0281 Beta-TrCP (transducin 100.0 4.5E-36 9.7E-41 274.8 13.6 273 3-415 210-482 (499)
45 KOG0282 mRNA splicing factor [ 100.0 5E-35 1.1E-39 280.4 19.2 292 22-450 206-503 (503)
46 KOG0645 WD40 repeat protein [G 100.0 1.8E-32 3.9E-37 243.5 33.8 290 230-536 5-311 (312)
47 KOG0292 Vesicle coat complex C 100.0 2.6E-33 5.7E-38 286.3 32.1 295 26-493 5-320 (1202)
48 cd00200 WD40 WD40 domain, foun 100.0 1.3E-32 2.7E-37 278.9 37.5 286 234-534 4-289 (289)
49 KOG0293 WD40 repeat-containing 100.0 3.1E-34 6.6E-39 268.9 22.8 292 23-358 217-513 (519)
50 KOG2106 Uncharacterized conser 100.0 2.7E-31 5.8E-36 255.5 43.1 419 11-536 86-521 (626)
51 cd00200 WD40 WD40 domain, foun 100.0 1.7E-32 3.6E-37 278.0 37.0 288 23-492 2-289 (289)
52 KOG0292 Vesicle coat complex C 100.0 9.6E-32 2.1E-36 274.9 41.5 323 2-359 23-398 (1202)
53 KOG0316 Conserved WD40 repeat- 100.0 5E-33 1.1E-37 241.6 26.7 284 233-534 11-297 (307)
54 KOG0266 WD40 repeat-containing 100.0 1.2E-32 2.6E-37 291.1 33.4 292 24-494 152-454 (456)
55 PLN00181 protein SPA1-RELATED; 100.0 6.5E-32 1.4E-36 308.4 41.6 312 53-493 457-792 (793)
56 KOG0266 WD40 repeat-containing 100.0 1.3E-32 2.8E-37 290.9 33.0 283 239-536 159-454 (456)
57 KOG1063 RNA polymerase II elon 100.0 2.1E-31 4.6E-36 266.1 39.5 506 2-536 71-699 (764)
58 KOG0282 mRNA splicing factor [ 100.0 7E-34 1.5E-38 272.6 18.7 291 230-534 205-503 (503)
59 KOG0313 Microtubule binding pr 100.0 3.7E-32 8.1E-37 252.7 27.5 292 237-536 103-418 (423)
60 KOG0278 Serine/threonine kinas 100.0 3.2E-33 7E-38 244.9 18.1 291 233-540 8-301 (334)
61 PLN00181 protein SPA1-RELATED; 100.0 5.9E-31 1.3E-35 300.5 41.5 286 234-535 478-792 (793)
62 KOG0293 WD40 repeat-containing 100.0 4E-32 8.7E-37 254.7 23.4 291 231-537 216-514 (519)
63 KOG0316 Conserved WD40 repeat- 100.0 2.1E-31 4.6E-36 231.5 26.0 283 23-492 10-297 (307)
64 KOG2048 WD40 repeat protein [G 100.0 2E-28 4.4E-33 244.7 49.0 487 3-536 40-548 (691)
65 KOG0277 Peroxisomal targeting 100.0 2.7E-31 5.8E-36 233.7 21.9 281 243-535 12-308 (311)
66 KOG0643 Translation initiation 100.0 7.4E-31 1.6E-35 232.6 24.0 291 25-452 5-317 (327)
67 KOG2048 WD40 repeat protein [G 100.0 1.2E-27 2.5E-32 239.3 47.6 460 28-540 23-509 (691)
68 KOG0313 Microtubule binding pr 100.0 2E-30 4.4E-35 241.2 25.9 281 29-493 104-417 (423)
69 KOG0274 Cdc4 and related F-box 100.0 2.7E-30 5.9E-35 270.8 29.9 281 238-544 207-490 (537)
70 KOG1407 WD40 repeat protein [F 100.0 5.7E-30 1.2E-34 226.4 27.0 234 235-485 60-293 (313)
71 KOG0643 Translation initiation 100.0 9.6E-30 2.1E-34 225.6 28.5 295 234-537 5-318 (327)
72 KOG0278 Serine/threonine kinas 100.0 3.3E-31 7.2E-36 232.3 18.7 289 24-456 8-301 (334)
73 KOG1407 WD40 repeat protein [F 100.0 1.5E-29 3.3E-34 223.7 27.4 278 233-527 14-293 (313)
74 KOG0274 Cdc4 and related F-box 100.0 1E-29 2.2E-34 266.5 31.1 290 24-506 201-494 (537)
75 KOG1446 Histone H3 (Lys4) meth 100.0 1E-28 2.2E-33 225.7 33.4 286 233-537 8-304 (311)
76 KOG0277 Peroxisomal targeting 100.0 4.1E-30 8.9E-35 226.3 23.4 283 194-493 12-308 (311)
77 KOG0268 Sof1-like rRNA process 100.0 5.3E-31 1.1E-35 243.4 15.0 288 23-497 59-348 (433)
78 KOG0275 Conserved WD40 repeat- 100.0 8.4E-31 1.8E-35 238.1 16.0 287 28-450 211-507 (508)
79 KOG0305 Anaphase promoting com 100.0 6.2E-29 1.4E-33 249.7 29.0 271 251-538 187-463 (484)
80 KOG0300 WD40 repeat-containing 100.0 1.6E-29 3.4E-34 229.3 21.9 332 21-496 139-478 (481)
81 KOG0310 Conserved WD40 repeat- 100.0 6.5E-29 1.4E-33 239.1 26.7 282 190-493 26-308 (487)
82 KOG0288 WD40 repeat protein Ti 100.0 4.6E-30 1E-34 241.4 17.7 282 234-534 170-459 (459)
83 KOG1446 Histone H3 (Lys4) meth 100.0 1.5E-27 3.3E-32 218.0 33.4 292 65-494 5-303 (311)
84 KOG0283 WD40 repeat-containing 100.0 5.6E-29 1.2E-33 256.2 24.6 209 272-496 359-578 (712)
85 KOG0772 Uncharacterized conser 100.0 8.1E-29 1.8E-33 239.1 24.0 304 23-492 160-485 (641)
86 KOG0288 WD40 repeat protein Ti 100.0 8.2E-30 1.8E-34 239.7 16.6 284 22-491 167-458 (459)
87 KOG0275 Conserved WD40 repeat- 100.0 9.4E-30 2E-34 231.3 16.5 282 237-534 211-507 (508)
88 KOG0301 Phospholipase A2-activ 100.0 2.4E-28 5.2E-33 244.5 27.5 283 229-537 4-289 (745)
89 KOG0772 Uncharacterized conser 100.0 2E-28 4.4E-33 236.4 25.7 212 323-538 264-489 (641)
90 KOG0268 Sof1-like rRNA process 100.0 4.4E-29 9.4E-34 230.8 20.0 334 230-586 57-393 (433)
91 KOG0973 Histone transcription 100.0 1.7E-28 3.8E-33 259.1 27.3 311 29-497 12-358 (942)
92 KOG0289 mRNA splicing factor [ 100.0 6.2E-28 1.3E-32 228.4 26.5 282 241-535 221-505 (506)
93 KOG0640 mRNA cleavage stimulat 100.0 1E-28 2.3E-33 223.4 18.9 252 274-536 164-426 (430)
94 KOG0308 Conserved WD40 repeat- 100.0 1.3E-28 2.9E-33 244.4 20.3 353 2-503 39-402 (735)
95 KOG0299 U3 snoRNP-associated p 100.0 3.8E-27 8.2E-32 225.2 26.4 239 280-535 200-455 (479)
96 KOG0299 U3 snoRNP-associated p 100.0 3.2E-27 7E-32 225.6 25.9 286 23-441 135-444 (479)
97 KOG0308 Conserved WD40 repeat- 100.0 2.9E-28 6.4E-33 242.0 19.4 289 245-536 30-327 (735)
98 KOG0647 mRNA export protein (c 100.0 4.7E-27 1E-31 212.4 25.2 275 28-483 25-312 (347)
99 KOG0294 WD40 repeat-containing 100.0 2.3E-26 5E-31 209.2 29.4 290 204-514 3-305 (362)
100 PTZ00420 coronin; Provisional 100.0 2.1E-26 4.6E-31 242.3 33.1 234 302-538 49-295 (568)
101 KOG0305 Anaphase promoting com 100.0 7.6E-27 1.7E-31 234.8 28.4 266 6-454 193-463 (484)
102 KOG0283 WD40 repeat-containing 100.0 1.1E-27 2.4E-32 246.7 22.8 215 231-454 361-578 (712)
103 KOG0264 Nucleosome remodeling 100.0 2.6E-27 5.6E-32 226.6 23.3 254 279-537 121-405 (422)
104 PTZ00421 coronin; Provisional 100.0 3.3E-26 7.2E-31 240.3 33.3 215 322-539 70-293 (493)
105 KOG0641 WD40 repeat protein [G 100.0 2.8E-25 6.1E-30 192.1 32.7 299 28-493 30-348 (350)
106 PTZ00421 coronin; Provisional 100.0 5.7E-26 1.2E-30 238.6 34.5 229 277-517 70-314 (493)
107 KOG0301 Phospholipase A2-activ 100.0 1.2E-26 2.6E-31 232.5 27.5 225 245-494 64-288 (745)
108 PTZ00420 coronin; Provisional 100.0 8.2E-26 1.8E-30 237.9 35.1 247 258-518 50-318 (568)
109 KOG0294 WD40 repeat-containing 100.0 1.9E-26 4.2E-31 209.7 26.1 244 275-537 36-282 (362)
110 KOG0289 mRNA splicing factor [ 100.0 1.3E-26 2.7E-31 219.6 25.6 271 2-451 233-505 (506)
111 KOG0973 Histone transcription 100.0 9.9E-26 2.1E-30 238.4 30.4 285 241-540 15-359 (942)
112 KOG0647 mRNA export protein (c 99.9 1.6E-25 3.5E-30 202.6 25.2 270 238-524 26-311 (347)
113 KOG0264 Nucleosome remodeling 99.9 5.7E-26 1.2E-30 217.4 23.5 252 233-494 118-404 (422)
114 KOG1332 Vesicle coat complex C 99.9 1.9E-26 4.1E-31 202.1 18.3 248 279-537 8-287 (299)
115 KOG1036 Mitotic spindle checkp 99.9 4.8E-25 1E-29 200.5 26.9 267 239-526 13-294 (323)
116 KOG0640 mRNA cleavage stimulat 99.9 1.9E-25 4.2E-30 202.3 23.8 296 22-410 104-426 (430)
117 KOG0646 WD40 repeat protein [G 99.9 1.2E-25 2.6E-30 215.5 23.7 252 262-519 61-332 (476)
118 KOG0300 WD40 repeat-containing 99.9 1.2E-25 2.5E-30 204.2 22.3 293 228-538 137-478 (481)
119 KOG0646 WD40 repeat protein [G 99.9 7.1E-25 1.5E-29 210.2 28.3 238 241-493 83-349 (476)
120 KOG1445 Tumor-specific antigen 99.9 1.8E-24 4E-29 213.9 30.3 233 303-539 599-847 (1012)
121 KOG2096 WD40 repeat protein [G 99.9 5.2E-25 1.1E-29 200.4 24.4 312 56-450 63-400 (420)
122 KOG1036 Mitotic spindle checkp 99.9 1.7E-24 3.7E-29 197.0 27.4 270 189-484 12-294 (323)
123 KOG0641 WD40 repeat protein [G 99.9 2.7E-23 5.9E-28 179.9 33.1 285 237-536 30-349 (350)
124 KOG4283 Transcription-coupled 99.9 1.9E-24 4E-29 194.7 24.7 255 236-493 98-364 (397)
125 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 5.4E-23 1.2E-27 209.9 38.0 288 2-432 3-300 (300)
126 KOG1963 WD40 repeat protein [G 99.9 5.4E-22 1.2E-26 205.6 43.8 482 23-538 9-540 (792)
127 KOG4283 Transcription-coupled 99.9 6.7E-24 1.5E-28 191.1 25.9 295 26-451 39-364 (397)
128 KOG2096 WD40 repeat protein [G 99.9 1.1E-23 2.3E-28 191.9 27.2 290 233-539 80-405 (420)
129 KOG1445 Tumor-specific antigen 99.9 2.7E-23 5.8E-28 205.8 31.4 176 347-528 600-786 (1012)
130 KOG0650 WD40 repeat nucleolar 99.9 2.7E-24 5.8E-29 211.8 24.2 319 21-491 391-732 (733)
131 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 7.2E-23 1.6E-27 209.0 35.8 270 253-539 2-282 (300)
132 KOG0267 Microtubule severing p 99.9 3.4E-26 7.3E-31 230.1 10.5 252 258-529 10-261 (825)
133 KOG0269 WD40 repeat-containing 99.9 5.9E-25 1.3E-29 223.1 18.3 290 194-496 43-342 (839)
134 KOG0639 Transducin-like enhanc 99.9 1.8E-24 3.8E-29 208.4 20.4 279 239-535 418-703 (705)
135 KOG1273 WD40 repeat protein [G 99.9 1.5E-23 3.2E-28 190.7 24.6 293 33-452 26-322 (405)
136 KOG1274 WD40 repeat protein [G 99.9 2.4E-23 5.2E-28 215.7 29.3 276 237-533 11-297 (933)
137 KOG0650 WD40 repeat nucleolar 99.9 9.1E-24 2E-28 208.1 24.6 316 66-533 392-732 (733)
138 KOG0269 WD40 repeat-containing 99.9 1.5E-24 3.3E-29 220.2 19.7 231 292-533 95-337 (839)
139 KOG0639 Transducin-like enhanc 99.9 4.5E-24 9.8E-29 205.6 21.3 282 28-493 417-703 (705)
140 KOG0321 WD40 repeat-containing 99.9 1.1E-23 2.3E-28 209.4 23.7 289 250-541 62-396 (720)
141 KOG1332 Vesicle coat complex C 99.9 4.3E-24 9.4E-29 187.4 17.5 251 26-451 7-285 (299)
142 KOG2445 Nuclear pore complex c 99.9 5.3E-23 1.2E-27 186.8 25.1 253 279-536 10-318 (361)
143 KOG1274 WD40 repeat protein [G 99.9 3.5E-23 7.6E-28 214.5 26.7 243 279-537 10-263 (933)
144 KOG4328 WD40 protein [Function 99.9 6.6E-23 1.4E-27 196.0 25.2 306 15-494 171-495 (498)
145 KOG2055 WD40 repeat protein [G 99.9 1.1E-22 2.4E-27 194.7 26.5 285 237-536 211-512 (514)
146 KOG0267 Microtubule severing p 99.9 4.4E-25 9.5E-30 222.2 8.4 223 300-539 7-229 (825)
147 KOG1273 WD40 repeat protein [G 99.9 1.7E-22 3.7E-27 183.9 24.4 285 242-538 26-324 (405)
148 PF08625 Utp13: Utp13 specific 99.9 2.9E-24 6.2E-29 181.4 11.7 136 555-690 1-141 (141)
149 KOG4328 WD40 protein [Function 99.9 1.1E-22 2.3E-27 194.6 23.2 291 233-536 180-495 (498)
150 COG2319 FOG: WD40 repeat [Gene 99.9 1.8E-19 4E-24 194.7 50.7 372 25-537 60-443 (466)
151 KOG1538 Uncharacterized conser 99.9 6.1E-19 1.3E-23 176.2 47.3 403 32-490 14-520 (1081)
152 KOG2055 WD40 repeat protein [G 99.9 4.2E-22 9.2E-27 190.7 24.0 287 188-494 211-512 (514)
153 KOG1963 WD40 repeat protein [G 99.9 3.5E-20 7.6E-25 192.3 37.8 495 6-541 33-588 (792)
154 KOG2445 Nuclear pore complex c 99.9 3.3E-21 7.1E-26 175.2 26.0 267 27-410 10-318 (361)
155 KOG4378 Nuclear protein COP1 [ 99.9 1.1E-21 2.3E-26 189.2 23.1 211 253-476 92-305 (673)
156 KOG0270 WD40 repeat-containing 99.9 1.4E-21 3E-26 186.5 23.3 289 195-500 130-455 (463)
157 KOG0302 Ribosome Assembly prot 99.9 1.1E-21 2.4E-26 183.1 21.9 248 234-492 146-436 (440)
158 KOG1034 Transcriptional repres 99.9 3.5E-21 7.6E-26 176.6 24.4 294 233-536 32-383 (385)
159 KOG0321 WD40 repeat-containing 99.9 1.2E-21 2.6E-26 194.9 22.6 307 2-317 66-393 (720)
160 KOG0302 Ribosome Assembly prot 99.9 3.4E-22 7.4E-27 186.5 17.0 220 324-544 148-386 (440)
161 KOG2919 Guanine nucleotide-bin 99.9 5.3E-21 1.2E-25 174.9 22.7 234 297-537 123-368 (406)
162 KOG4378 Nuclear protein COP1 [ 99.9 3.5E-21 7.7E-26 185.7 22.0 293 205-518 5-305 (673)
163 COG2319 FOG: WD40 repeat [Gene 99.9 5.4E-18 1.2E-22 183.1 49.7 352 2-495 79-443 (466)
164 KOG0270 WD40 repeat-containing 99.9 2.9E-21 6.3E-26 184.4 20.4 239 297-545 192-458 (463)
165 KOG0322 G-protein beta subunit 99.9 2E-21 4.3E-26 172.8 18.0 306 22-451 6-322 (323)
166 KOG0307 Vesicle coat complex C 99.9 2E-21 4.4E-26 207.0 14.8 249 283-539 65-330 (1049)
167 KOG1538 Uncharacterized conser 99.9 4.4E-20 9.5E-25 184.3 22.6 274 241-538 14-295 (1081)
168 KOG1034 Transcriptional repres 99.9 2.9E-19 6.3E-24 164.1 25.6 297 191-494 39-383 (385)
169 KOG1009 Chromatin assembly com 99.9 3.4E-19 7.3E-24 168.5 25.5 326 30-541 13-377 (434)
170 KOG1188 WD40 repeat protein [G 99.8 1.4E-19 3E-24 167.3 18.4 272 253-535 41-345 (376)
171 KOG0307 Vesicle coat complex C 99.8 3.3E-19 7.1E-24 190.3 23.7 247 239-497 64-330 (1049)
172 KOG0642 Cell-cycle nuclear pro 99.8 6.9E-20 1.5E-24 180.4 16.0 259 276-539 288-564 (577)
173 KOG1007 WD repeat protein TSSC 99.8 9.7E-19 2.1E-23 157.7 21.7 274 254-536 28-361 (370)
174 KOG1587 Cytoplasmic dynein int 99.8 2E-18 4.3E-23 179.9 26.9 276 262-539 222-519 (555)
175 KOG2919 Guanine nucleotide-bin 99.8 4.3E-18 9.4E-23 156.0 24.6 277 33-443 52-361 (406)
176 KOG0322 G-protein beta subunit 99.8 2.5E-19 5.3E-24 159.6 15.8 288 236-535 11-322 (323)
177 KOG0642 Cell-cycle nuclear pro 99.8 1E-19 2.2E-24 179.2 14.6 276 24-464 288-573 (577)
178 KOG1009 Chromatin assembly com 99.8 5.4E-18 1.2E-22 160.4 24.5 125 2-128 28-178 (434)
179 KOG4227 WD40 repeat protein [G 99.8 2.2E-18 4.7E-23 161.6 21.3 300 24-409 50-386 (609)
180 KOG1188 WD40 repeat protein [G 99.8 1.6E-18 3.5E-23 160.3 18.9 281 2-410 42-346 (376)
181 KOG1517 Guanine nucleotide bin 99.8 3E-18 6.4E-23 180.3 23.2 316 9-455 1049-1384(1387)
182 KOG0303 Actin-binding protein 99.8 2.6E-18 5.6E-23 161.7 20.2 213 322-539 76-297 (472)
183 KOG0649 WD40 repeat protein [G 99.8 1.6E-17 3.4E-22 146.3 23.5 235 292-537 18-275 (325)
184 KOG1587 Cytoplasmic dynein int 99.8 8.3E-18 1.8E-22 175.3 25.2 280 9-411 221-517 (555)
185 KOG1912 WD40 repeat protein [G 99.8 3.6E-16 7.8E-21 159.5 34.2 511 3-537 28-742 (1062)
186 KOG1007 WD repeat protein TSSC 99.8 1.7E-17 3.6E-22 149.8 21.8 279 9-410 39-361 (370)
187 KOG0644 Uncharacterized conser 99.8 1.4E-19 3E-24 185.5 9.5 289 230-539 181-471 (1113)
188 KOG1310 WD40 repeat protein [G 99.8 8.5E-18 1.8E-22 164.6 20.7 222 67-412 43-305 (758)
189 KOG4227 WD40 repeat protein [G 99.8 2.1E-17 4.5E-22 155.2 21.3 249 237-493 103-386 (609)
190 KOG0644 Uncharacterized conser 99.8 5.7E-19 1.2E-23 181.0 11.6 285 24-360 184-470 (1113)
191 KOG1334 WD40 repeat protein [G 99.8 3.2E-18 7E-23 165.5 13.3 301 229-538 132-468 (559)
192 PF02239 Cytochrom_D1: Cytochr 99.8 8.6E-15 1.9E-19 149.3 39.2 334 2-461 8-356 (369)
193 KOG1524 WD40 repeat-containing 99.8 4.5E-17 9.9E-22 159.1 20.5 209 299-535 77-285 (737)
194 PRK11028 6-phosphogluconolacto 99.8 9.6E-16 2.1E-20 157.5 31.3 270 255-536 5-304 (330)
195 KOG0290 Conserved WD40 repeat- 99.8 9.3E-17 2E-21 145.3 20.0 253 284-539 46-321 (364)
196 KOG1517 Guanine nucleotide bin 99.8 1.6E-16 3.4E-21 167.5 24.8 195 292-496 1173-1383(1387)
197 KOG0303 Actin-binding protein 99.8 1.6E-16 3.4E-21 149.8 22.1 236 249-498 41-298 (472)
198 KOG1334 WD40 repeat protein [G 99.7 1.6E-17 3.5E-22 160.7 14.2 305 67-495 135-467 (559)
199 PF02239 Cytochrom_D1: Cytochr 99.7 9.2E-15 2E-19 149.1 35.0 324 46-503 8-356 (369)
200 KOG2110 Uncharacterized conser 99.7 1E-14 2.2E-19 137.0 32.0 270 250-537 15-331 (391)
201 KOG2041 WD40 repeat protein [G 99.7 9.3E-15 2E-19 147.9 33.2 572 2-624 28-735 (1189)
202 KOG4547 WD40 repeat-containing 99.7 2.5E-15 5.5E-20 150.0 28.6 190 295-494 3-220 (541)
203 KOG1240 Protein kinase contain 99.7 5.6E-16 1.2E-20 166.2 25.3 362 59-492 1034-1431(1431)
204 KOG4497 Uncharacterized conser 99.7 6.5E-16 1.4E-20 142.2 21.8 343 79-531 13-427 (447)
205 KOG1524 WD40 repeat-containing 99.7 2.4E-16 5.2E-21 154.2 19.0 209 251-490 74-282 (737)
206 PRK11028 6-phosphogluconolacto 99.7 2.4E-14 5.2E-19 147.2 32.8 244 242-494 37-304 (330)
207 KOG2394 WD40 protein DMR-N9 [G 99.7 6.8E-16 1.5E-20 151.3 19.7 175 300-474 188-384 (636)
208 KOG0649 WD40 repeat protein [G 99.7 1.2E-14 2.6E-19 128.3 25.4 284 193-491 13-313 (325)
209 KOG1240 Protein kinase contain 99.7 3.8E-15 8.3E-20 159.9 25.9 365 15-408 1034-1431(1431)
210 KOG2110 Uncharacterized conser 99.7 1.1E-14 2.4E-19 136.7 25.8 227 294-538 14-250 (391)
211 KOG1912 WD40 repeat protein [G 99.7 1.4E-14 3E-19 148.1 28.6 433 29-496 14-553 (1062)
212 KOG2111 Uncharacterized conser 99.7 6.9E-14 1.5E-18 128.9 29.8 278 242-535 8-321 (346)
213 PRK01742 tolB translocation pr 99.7 2.7E-15 5.9E-20 158.8 23.0 235 261-517 183-426 (429)
214 KOG0974 WD-repeat protein WDR6 99.7 4.2E-14 9.2E-19 150.2 31.4 398 1-457 146-578 (967)
215 KOG0771 Prolactin regulatory e 99.7 6.5E-16 1.4E-20 147.8 15.9 195 331-537 148-355 (398)
216 KOG1523 Actin-related protein 99.7 6.6E-15 1.4E-19 135.5 21.0 236 280-527 8-269 (361)
217 KOG1272 WD40-repeat-containing 99.7 1.8E-16 4E-21 152.5 11.0 263 74-481 129-396 (545)
218 KOG3881 Uncharacterized conser 99.7 5.7E-15 1.2E-19 139.6 20.7 273 237-517 53-342 (412)
219 KOG0290 Conserved WD40 repeat- 99.7 3.7E-15 8E-20 135.0 18.4 245 191-448 97-361 (364)
220 KOG0771 Prolactin regulatory e 99.7 1.3E-14 2.7E-19 139.1 21.0 192 292-494 152-354 (398)
221 KOG4497 Uncharacterized conser 99.6 4.1E-14 8.8E-19 130.5 22.1 273 248-537 16-392 (447)
222 KOG1272 WD40-repeat-containing 99.6 4.1E-16 8.9E-21 150.1 9.3 231 285-536 132-362 (545)
223 KOG2315 Predicted translation 99.6 8.7E-13 1.9E-17 131.0 32.7 357 9-475 10-411 (566)
224 PRK01742 tolB translocation pr 99.6 1.6E-14 3.5E-19 153.0 22.0 211 306-536 183-401 (429)
225 KOG1523 Actin-related protein 99.6 1.4E-14 3.1E-19 133.3 18.3 209 324-540 7-240 (361)
226 KOG2394 WD40 protein DMR-N9 [G 99.6 3E-14 6.5E-19 140.0 19.7 211 191-432 174-384 (636)
227 KOG2139 WD40 repeat protein [G 99.6 8.5E-14 1.8E-18 130.2 21.2 227 299-529 112-368 (445)
228 COG5354 Uncharacterized protei 99.6 1.8E-12 3.8E-17 127.2 30.9 365 13-486 15-421 (561)
229 KOG2321 WD40 repeat protein [G 99.6 1.5E-13 3.3E-18 136.2 23.7 195 243-453 137-344 (703)
230 KOG2315 Predicted translation 99.6 5.4E-12 1.2E-16 125.5 33.9 264 262-543 105-397 (566)
231 KOG2321 WD40 repeat protein [G 99.6 4.3E-13 9.2E-18 133.0 24.0 282 237-537 49-344 (703)
232 KOG2111 Uncharacterized conser 99.6 9.6E-12 2.1E-16 115.0 30.7 237 32-361 7-259 (346)
233 PRK03629 tolB translocation pr 99.6 1.5E-12 3.3E-17 137.5 29.3 236 262-516 179-427 (429)
234 KOG3881 Uncharacterized conser 99.6 4.3E-13 9.4E-18 127.1 22.0 226 234-475 100-342 (412)
235 KOG1310 WD40 repeat protein [G 99.6 2.9E-14 6.4E-19 140.2 14.4 230 229-460 40-311 (758)
236 PF08662 eIF2A: Eukaryotic tra 99.6 3.1E-13 6.7E-18 125.0 20.1 150 384-538 9-181 (194)
237 KOG2139 WD40 repeat protein [G 99.6 6E-12 1.3E-16 118.0 27.6 305 30-451 98-430 (445)
238 KOG2314 Translation initiation 99.6 6.8E-12 1.5E-16 124.1 29.2 232 292-538 313-575 (698)
239 PF04762 IKI3: IKI3 family; I 99.6 8E-08 1.7E-12 109.4 65.3 399 29-453 74-565 (928)
240 PRK02889 tolB translocation pr 99.5 1.4E-12 2.9E-17 138.1 24.5 238 262-517 176-425 (427)
241 PRK04922 tolB translocation pr 99.5 1.8E-12 3.9E-17 137.7 25.5 235 262-516 184-432 (433)
242 PF08662 eIF2A: Eukaryotic tra 99.5 1.2E-12 2.7E-17 121.0 20.6 158 331-502 9-186 (194)
243 COG4946 Uncharacterized protei 99.5 1.9E-09 4.1E-14 105.1 41.0 220 203-441 278-507 (668)
244 PRK05137 tolB translocation pr 99.5 1.1E-11 2.3E-16 132.0 28.3 236 262-517 182-433 (435)
245 PRK05137 tolB translocation pr 99.5 1.2E-11 2.6E-16 131.7 27.8 216 307-538 182-414 (435)
246 PRK03629 tolB translocation pr 99.5 2.6E-11 5.5E-16 128.2 29.3 214 308-537 180-407 (429)
247 KOG0974 WD-repeat protein WDR6 99.5 1E-10 2.2E-15 125.0 33.2 395 2-454 101-523 (967)
248 COG5354 Uncharacterized protei 99.5 9.2E-11 2E-15 115.4 29.3 372 57-528 15-421 (561)
249 KOG1354 Serine/threonine prote 99.5 9.8E-12 2.1E-16 115.8 20.8 238 279-533 161-431 (433)
250 PRK04922 tolB translocation pr 99.5 1.3E-11 2.8E-16 131.2 25.1 214 307-537 184-412 (433)
251 KOG2041 WD40 repeat protein [G 99.5 3.3E-10 7.1E-15 115.6 33.3 461 29-536 13-573 (1189)
252 PRK02889 tolB translocation pr 99.5 7.2E-12 1.6E-16 132.6 22.5 206 307-528 176-392 (427)
253 PF04762 IKI3: IKI3 family; I 99.4 4.5E-08 9.8E-13 111.4 50.7 445 31-533 22-561 (928)
254 PF10282 Lactonase: Lactonase, 99.4 9E-09 2E-13 105.8 39.6 290 212-514 13-345 (345)
255 KOG4547 WD40 repeat-containing 99.4 3.1E-11 6.7E-16 121.2 19.7 191 339-538 4-222 (541)
256 KOG1354 Serine/threonine prote 99.4 4.6E-11 9.9E-16 111.5 19.1 253 282-539 25-362 (433)
257 KOG1409 Uncharacterized conser 99.4 7.5E-11 1.6E-15 110.2 20.5 337 65-495 15-395 (404)
258 TIGR03300 assembly_YfgL outer 99.4 1.3E-09 2.9E-14 114.3 33.1 216 254-491 147-376 (377)
259 TIGR02658 TTQ_MADH_Hv methylam 99.4 4.9E-09 1.1E-13 104.4 34.8 125 334-461 200-339 (352)
260 TIGR03300 assembly_YfgL outer 99.4 1.1E-09 2.4E-14 114.9 32.2 263 253-533 106-376 (377)
261 PF09384 UTP15_C: UTP15 C term 99.4 4.7E-12 1E-16 109.7 10.7 128 553-685 20-148 (148)
262 TIGR02800 propeller_TolB tol-p 99.4 3.8E-10 8.2E-15 120.6 27.4 233 262-514 170-416 (417)
263 KOG1409 Uncharacterized conser 99.4 1.4E-10 3E-15 108.4 20.4 245 231-494 16-270 (404)
264 COG4946 Uncharacterized protei 99.4 1.3E-08 2.8E-13 99.4 34.5 217 292-525 274-507 (668)
265 KOG0280 Uncharacterized conser 99.4 2.5E-10 5.5E-15 104.5 21.5 272 210-496 44-335 (339)
266 PF10282 Lactonase: Lactonase, 99.3 1.4E-08 2.9E-13 104.5 37.2 292 160-472 13-345 (345)
267 PRK04792 tolB translocation pr 99.3 6.3E-10 1.4E-14 118.2 28.1 235 263-516 199-446 (448)
268 PRK00178 tolB translocation pr 99.3 7.9E-10 1.7E-14 118.1 28.2 236 263-517 180-428 (430)
269 KOG0280 Uncharacterized conser 99.3 3.7E-10 8E-15 103.4 21.4 267 262-539 46-336 (339)
270 PRK01029 tolB translocation pr 99.3 8.9E-10 1.9E-14 116.0 26.9 220 307-539 165-406 (428)
271 TIGR02658 TTQ_MADH_Hv methylam 99.3 2.3E-08 5.1E-13 99.6 34.7 280 10-323 27-338 (352)
272 PRK01029 tolB translocation pr 99.3 1.7E-09 3.7E-14 113.8 28.5 244 262-518 165-426 (428)
273 TIGR02800 propeller_TolB tol-p 99.3 1.2E-09 2.6E-14 116.8 27.1 205 307-528 170-386 (417)
274 KOG1064 RAVE (regulator of V-A 99.3 3.4E-11 7.4E-16 134.6 14.6 198 279-503 2205-2407(2439)
275 PRK00178 tolB translocation pr 99.3 1.7E-09 3.7E-14 115.6 26.1 213 308-536 180-406 (430)
276 COG2706 3-carboxymuconate cycl 99.2 8.4E-08 1.8E-12 91.5 33.0 267 261-537 15-322 (346)
277 PRK04792 tolB translocation pr 99.2 8.5E-09 1.8E-13 109.6 27.9 213 308-536 199-425 (448)
278 PLN02919 haloacid dehalogenase 99.2 1.9E-08 4.1E-13 116.8 32.1 247 292-539 575-891 (1057)
279 KOG1064 RAVE (regulator of V-A 99.2 8.6E-11 1.9E-15 131.5 11.6 191 324-539 2205-2401(2439)
280 PLN02919 haloacid dehalogenase 99.2 3.6E-08 7.9E-13 114.5 33.4 253 243-498 571-892 (1057)
281 KOG4532 WD40-like repeat conta 99.2 8.1E-09 1.8E-13 93.4 21.6 225 299-536 86-331 (344)
282 KOG4190 Uncharacterized conser 99.2 1.9E-10 4.1E-15 113.8 11.8 289 230-532 726-1032(1034)
283 KOG4532 WD40-like repeat conta 99.2 1.5E-08 3.2E-13 91.8 21.8 233 251-494 83-331 (344)
284 KOG2314 Translation initiation 99.2 1.7E-08 3.7E-13 100.6 24.2 128 308-443 426-558 (698)
285 COG2706 3-carboxymuconate cycl 99.1 8E-07 1.7E-11 85.0 32.9 291 211-514 15-344 (346)
286 PF04003 Utp12: Dip2/Utp12 Fam 99.1 1.6E-10 3.4E-15 96.4 6.9 93 596-689 14-110 (110)
287 KOG0309 Conserved WD40 repeat- 99.1 2.2E-09 4.8E-14 110.2 14.2 284 243-539 28-342 (1081)
288 KOG4190 Uncharacterized conser 99.1 7.2E-10 1.6E-14 109.8 10.3 247 276-537 729-989 (1034)
289 KOG0309 Conserved WD40 repeat- 99.0 2.1E-09 4.4E-14 110.4 12.8 233 204-452 83-339 (1081)
290 KOG3914 WD repeat protein WDR4 99.0 2.7E-09 5.9E-14 102.4 12.3 159 335-503 70-232 (390)
291 PRK11138 outer membrane biogen 99.0 7.9E-07 1.7E-11 93.7 32.0 264 252-535 120-393 (394)
292 PRK11138 outer membrane biogen 98.9 1.7E-06 3.6E-11 91.2 30.8 309 3-357 72-393 (394)
293 KOG2114 Vacuolar assembly/sort 98.9 9.6E-06 2.1E-10 86.1 34.8 211 292-507 31-257 (933)
294 PRK04043 tolB translocation pr 98.9 6.1E-07 1.3E-11 93.9 26.6 212 307-537 169-401 (419)
295 PRK04043 tolB translocation pr 98.9 1.2E-06 2.7E-11 91.6 28.6 213 262-495 169-401 (419)
296 COG5170 CDC55 Serine/threonine 98.9 6.4E-08 1.4E-12 89.5 15.9 248 282-534 26-365 (460)
297 KOG1645 RING-finger-containing 98.9 2E-07 4.3E-12 89.6 19.6 261 264-537 175-462 (463)
298 KOG3914 WD repeat protein WDR4 98.9 1.5E-08 3.2E-13 97.5 11.9 156 383-541 65-228 (390)
299 PF08450 SGL: SMP-30/Gluconola 98.9 7.6E-06 1.6E-10 80.1 31.0 216 292-524 7-243 (246)
300 KOG2695 WD40 repeat protein [G 98.9 6.4E-09 1.4E-13 97.5 8.0 160 343-515 227-401 (425)
301 COG5170 CDC55 Serine/threonine 98.9 1.1E-07 2.4E-12 87.9 15.9 243 240-494 27-367 (460)
302 PF08450 SGL: SMP-30/Gluconola 98.9 1.3E-05 2.8E-10 78.5 31.9 219 244-483 4-244 (246)
303 PF13360 PQQ_2: PQQ-like domai 98.9 3.9E-06 8.4E-11 81.9 28.3 219 261-501 2-237 (238)
304 KOG0882 Cyclophilin-related pe 98.8 8.8E-08 1.9E-12 93.2 15.1 281 238-533 8-369 (558)
305 PF13360 PQQ_2: PQQ-like domai 98.8 3.1E-06 6.6E-11 82.7 25.7 216 306-539 2-233 (238)
306 KOG0882 Cyclophilin-related pe 98.8 9.6E-08 2.1E-12 93.0 12.5 214 325-547 7-242 (558)
307 KOG4714 Nucleoporin [Nuclear s 98.8 2.1E-07 4.4E-12 84.2 13.5 144 296-453 101-255 (319)
308 KOG4714 Nucleoporin [Nuclear s 98.7 5.2E-07 1.1E-11 81.7 15.8 95 262-358 159-254 (319)
309 PF15492 Nbas_N: Neuroblastoma 98.7 1.4E-05 3E-10 74.4 25.3 201 293-505 51-270 (282)
310 PF00400 WD40: WD domain, G-be 98.7 3.6E-08 7.8E-13 64.5 6.2 39 20-60 1-39 (39)
311 KOG3617 WD40 and TPR repeat-co 98.7 1.7E-06 3.8E-11 90.9 20.8 244 8-269 39-332 (1416)
312 KOG1832 HIV-1 Vpr-binding prot 98.7 8.7E-09 1.9E-13 108.0 3.4 219 275-522 1094-1317(1516)
313 KOG4649 PQQ (pyrrolo-quinoline 98.7 8E-05 1.7E-09 68.0 27.9 111 2-116 25-135 (354)
314 KOG1832 HIV-1 Vpr-binding prot 98.7 2.3E-08 5E-13 105.0 5.8 266 231-524 1093-1377(1516)
315 PF00400 WD40: WD domain, G-be 98.7 7.5E-08 1.6E-12 62.9 6.2 39 64-102 1-39 (39)
316 PF06433 Me-amine-dh_H: Methyl 98.7 0.00014 3.1E-09 70.9 31.0 278 10-325 17-330 (342)
317 PF06433 Me-amine-dh_H: Methyl 98.7 2.7E-05 6E-10 75.8 26.0 193 262-462 118-330 (342)
318 PF07433 DUF1513: Protein of u 98.6 7E-05 1.5E-09 72.2 28.0 243 243-527 8-277 (305)
319 KOG2695 WD40 repeat protein [G 98.6 7.3E-08 1.6E-12 90.6 7.6 143 396-541 228-381 (425)
320 KOG1275 PAB-dependent poly(A) 98.6 7.8E-07 1.7E-11 94.4 15.8 181 342-537 149-343 (1118)
321 PF15492 Nbas_N: Neuroblastoma 98.6 7.6E-05 1.7E-09 69.6 26.5 237 200-463 6-270 (282)
322 KOG4649 PQQ (pyrrolo-quinoline 98.6 0.00055 1.2E-08 62.7 29.9 262 253-537 64-352 (354)
323 KOG1645 RING-finger-containing 98.5 1.1E-05 2.5E-10 77.9 18.7 265 56-358 175-461 (463)
324 KOG1920 IkappaB kinase complex 98.5 0.0001 2.3E-09 81.6 27.8 242 239-497 68-325 (1265)
325 KOG1275 PAB-dependent poly(A) 98.5 2.6E-06 5.5E-11 90.7 14.7 187 3-223 150-345 (1118)
326 KOG2114 Vacuolar assembly/sort 98.5 6.4E-05 1.4E-09 80.1 23.9 208 248-467 31-259 (933)
327 PRK02888 nitrous-oxide reducta 98.4 0.00022 4.7E-09 75.5 27.6 211 295-525 203-450 (635)
328 cd00216 PQQ_DH Dehydrogenases 98.4 0.00037 8E-09 75.3 30.4 241 253-504 111-434 (488)
329 KOG2066 Vacuolar assembly/sort 98.4 7E-06 1.5E-10 86.5 15.9 180 328-536 40-233 (846)
330 PF07433 DUF1513: Protein of u 98.4 0.00013 2.7E-09 70.5 23.1 203 330-542 7-253 (305)
331 cd00216 PQQ_DH Dehydrogenases 98.4 0.00016 3.4E-09 78.1 26.9 280 252-541 61-429 (488)
332 KOG2066 Vacuolar assembly/sort 98.4 3.1E-05 6.7E-10 81.8 19.2 170 299-494 51-233 (846)
333 PRK02888 nitrous-oxide reducta 98.4 0.00038 8.2E-09 73.7 26.9 149 382-538 236-406 (635)
334 PF08596 Lgl_C: Lethal giant l 98.3 0.00084 1.8E-08 69.3 28.0 237 32-340 3-319 (395)
335 KOG3621 WD40 repeat-containing 98.3 0.00034 7.5E-09 73.2 23.9 285 237-541 30-358 (726)
336 PF00930 DPPIV_N: Dipeptidyl p 98.2 0.0024 5.2E-08 66.1 29.4 297 8-348 21-348 (353)
337 PF04053 Coatomer_WDAD: Coatom 98.2 0.0024 5.2E-08 66.9 29.2 222 284-541 34-267 (443)
338 PF00930 DPPIV_N: Dipeptidyl p 98.1 0.0024 5.2E-08 66.1 27.0 305 39-400 1-347 (353)
339 PF11768 DUF3312: Protein of u 98.1 0.0056 1.2E-07 63.5 28.2 77 376-454 255-331 (545)
340 KOG1920 IkappaB kinase complex 98.1 0.0041 9E-08 69.6 28.7 240 74-360 68-324 (1265)
341 PF08596 Lgl_C: Lethal giant l 98.1 0.0037 8.1E-08 64.5 27.1 194 237-442 84-326 (395)
342 COG3391 Uncharacterized conser 98.1 0.013 2.7E-07 61.2 31.3 261 264-539 13-286 (381)
343 PF06977 SdiA-regulated: SdiA- 98.1 0.0038 8.3E-08 59.6 24.8 199 323-533 17-247 (248)
344 PF03178 CPSF_A: CPSF A subuni 98.0 0.005 1.1E-07 62.9 27.5 219 307-535 2-264 (321)
345 PF06977 SdiA-regulated: SdiA- 98.0 0.0052 1.1E-07 58.7 25.2 209 277-491 16-247 (248)
346 KOG1008 Uncharacterized conser 98.0 1.6E-06 3.5E-11 88.6 1.3 197 329-536 58-275 (783)
347 KOG3617 WD40 and TPR repeat-co 98.0 0.00017 3.8E-09 76.4 15.9 265 250-538 25-335 (1416)
348 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.0 0.024 5.2E-07 61.6 32.9 62 401-463 440-501 (527)
349 PF04841 Vps16_N: Vps16, N-ter 98.0 0.031 6.8E-07 58.7 36.0 214 263-492 62-285 (410)
350 COG0823 TolB Periplasmic compo 97.9 0.001 2.3E-08 69.3 20.3 181 292-484 200-389 (425)
351 KOG3621 WD40 repeat-containing 97.9 0.00017 3.8E-09 75.3 14.2 153 292-453 41-198 (726)
352 PF04053 Coatomer_WDAD: Coatom 97.9 0.00086 1.9E-08 70.2 19.5 146 378-538 30-175 (443)
353 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.9 0.013 2.9E-07 63.5 28.9 285 252-541 69-495 (527)
354 COG3391 Uncharacterized conser 97.9 0.019 4E-07 59.9 29.0 213 292-516 81-308 (381)
355 PF11768 DUF3312: Protein of u 97.9 0.043 9.4E-07 57.2 37.0 152 420-580 257-437 (545)
356 PF00780 CNH: CNH domain; Int 97.9 0.025 5.3E-07 56.4 28.4 231 251-506 6-267 (275)
357 KOG1008 Uncharacterized conser 97.9 4.6E-06 1E-10 85.4 1.4 204 282-494 56-275 (783)
358 COG0823 TolB Periplasmic compo 97.9 0.0011 2.3E-08 69.2 18.4 191 320-524 185-387 (425)
359 PF03178 CPSF_A: CPSF A subuni 97.8 0.012 2.5E-07 60.2 25.9 177 262-452 2-202 (321)
360 PF04192 Utp21: Utp21 specific 97.8 6.2E-05 1.3E-09 71.0 8.2 114 566-691 112-234 (237)
361 KOG1897 Damage-specific DNA bi 97.8 0.097 2.1E-06 57.9 50.0 216 308-536 751-1004(1096)
362 PF00780 CNH: CNH domain; Int 97.8 0.022 4.9E-07 56.7 26.0 229 292-539 3-258 (275)
363 PF04841 Vps16_N: Vps16, N-ter 97.7 0.022 4.7E-07 59.8 26.3 197 308-517 62-270 (410)
364 KOG1897 Damage-specific DNA bi 97.7 0.12 2.6E-06 57.2 44.7 413 77-538 490-944 (1096)
365 PF08553 VID27: VID27 cytoplas 97.7 0.0094 2E-07 66.1 23.4 142 303-451 500-646 (794)
366 COG3386 Gluconolactonase [Carb 97.6 0.029 6.3E-07 55.7 23.1 222 292-525 32-274 (307)
367 KOG4640 Anaphase-promoting com 97.6 0.00035 7.7E-09 72.1 9.4 93 380-473 20-114 (665)
368 PF02897 Peptidase_S9_N: Proly 97.5 0.18 4E-06 53.7 31.7 239 292-539 131-407 (414)
369 COG3386 Gluconolactonase [Carb 97.5 0.059 1.3E-06 53.6 24.2 217 248-484 33-275 (307)
370 KOG4640 Anaphase-promoting com 97.5 0.0004 8.8E-09 71.7 9.1 93 422-515 20-114 (665)
371 smart00320 WD40 WD40 repeats. 97.4 0.00036 7.8E-09 44.7 5.5 39 20-60 2-40 (40)
372 PF14583 Pectate_lyase22: Olig 97.4 0.17 3.6E-06 51.1 29.2 269 251-535 46-380 (386)
373 PF14655 RAB3GAP2_N: Rab3 GTPa 97.4 0.13 2.8E-06 53.2 25.9 85 377-461 304-407 (415)
374 PRK13616 lipoprotein LpqB; Pro 97.4 0.016 3.5E-07 63.4 20.5 209 306-532 328-564 (591)
375 smart00320 WD40 WD40 repeats. 97.4 0.00054 1.2E-08 43.8 5.5 39 64-102 2-40 (40)
376 KOG2395 Protein involved in va 97.3 0.01 2.2E-07 60.5 16.2 147 294-451 343-499 (644)
377 KOG2079 Vacuolar assembly/sort 97.3 0.0024 5.2E-08 70.4 12.3 98 2-103 101-202 (1206)
378 PF08553 VID27: VID27 cytoplas 97.3 0.016 3.4E-07 64.4 18.5 139 392-535 493-646 (794)
379 PF14583 Pectate_lyase22: Olig 97.3 0.25 5.4E-06 49.9 31.1 280 194-492 39-379 (386)
380 COG3204 Uncharacterized protei 97.2 0.09 1.9E-06 50.1 20.0 178 71-272 82-265 (316)
381 PRK13616 lipoprotein LpqB; Pro 97.1 0.016 3.5E-07 63.4 16.8 148 381-536 350-525 (591)
382 TIGR03074 PQQ_membr_DH membran 97.1 0.77 1.7E-05 52.1 37.8 111 3-114 197-354 (764)
383 PF14783 BBS2_Mid: Ciliary BBS 97.1 0.05 1.1E-06 43.8 14.7 101 330-447 2-109 (111)
384 PF14727 PHTB1_N: PTHB1 N-term 97.1 0.48 1E-05 49.2 27.1 280 201-493 36-359 (418)
385 KOG2444 WD40 repeat protein [G 97.1 0.00082 1.8E-08 60.8 5.0 140 395-537 33-178 (238)
386 PF14783 BBS2_Mid: Ciliary BBS 97.1 0.041 8.9E-07 44.3 13.9 102 242-353 2-109 (111)
387 PHA02713 hypothetical protein; 97.0 0.052 1.1E-06 59.7 19.7 144 390-539 350-536 (557)
388 KOG4499 Ca2+-binding protein R 97.0 0.24 5.1E-06 45.4 19.6 136 381-517 109-264 (310)
389 PF14655 RAB3GAP2_N: Rab3 GTPa 97.0 0.31 6.7E-06 50.5 23.1 92 232-324 300-407 (415)
390 PHA02713 hypothetical protein; 96.9 0.074 1.6E-06 58.5 19.5 225 263-507 273-546 (557)
391 KOG4441 Proteins containing BT 96.8 0.13 2.7E-06 56.6 20.0 224 297-538 285-548 (571)
392 KOG4441 Proteins containing BT 96.8 0.18 3.8E-06 55.5 20.7 228 251-497 284-549 (571)
393 COG3490 Uncharacterized protei 96.7 0.36 7.7E-06 45.7 19.1 231 294-543 45-317 (366)
394 KOG2444 WD40 repeat protein [G 96.7 0.0036 7.7E-08 56.8 6.1 102 3-105 73-178 (238)
395 PF02897 Peptidase_S9_N: Proly 96.7 1.1 2.5E-05 47.6 31.7 74 32-107 125-213 (414)
396 KOG2079 Vacuolar assembly/sort 96.6 0.0076 1.6E-07 66.7 9.0 97 391-487 98-198 (1206)
397 PF10647 Gmad1: Lipoprotein Lp 96.6 0.72 1.6E-05 44.9 21.9 147 329-486 25-187 (253)
398 COG3490 Uncharacterized protei 96.5 0.8 1.7E-05 43.5 20.5 244 242-492 70-346 (366)
399 PF10433 MMS1_N: Mono-function 96.4 1.9 4.1E-05 47.2 43.8 403 77-516 46-503 (504)
400 PF14727 PHTB1_N: PTHB1 N-term 96.4 1.5 3.3E-05 45.6 30.0 154 151-314 38-203 (418)
401 KOG2395 Protein involved in va 96.2 0.068 1.5E-06 54.8 12.2 137 394-534 348-498 (644)
402 PF10647 Gmad1: Lipoprotein Lp 96.2 0.31 6.7E-06 47.5 16.7 145 382-529 25-188 (253)
403 TIGR03074 PQQ_membr_DH membran 96.2 2.1 4.5E-05 48.7 25.0 207 296-503 194-486 (764)
404 PF05096 Glu_cyclase_2: Glutam 96.2 1.3 2.8E-05 42.4 24.8 181 330-525 47-249 (264)
405 COG3204 Uncharacterized protei 96.2 0.65 1.4E-05 44.5 17.5 171 26-222 81-265 (316)
406 PF05694 SBP56: 56kDa selenium 96.0 0.82 1.8E-05 46.7 18.4 193 340-538 87-344 (461)
407 KOG1916 Nuclear protein, conta 95.8 0.0071 1.5E-07 65.4 3.5 188 306-499 110-328 (1283)
408 KOG3630 Nuclear pore complex, 95.8 0.11 2.4E-06 58.2 12.3 144 380-525 100-262 (1405)
409 PHA03098 kelch-like protein; P 95.7 0.74 1.6E-05 51.0 19.2 185 297-498 295-515 (534)
410 PF12894 Apc4_WD40: Anaphase-p 95.7 0.033 7.2E-07 37.2 5.2 34 422-456 11-44 (47)
411 COG5276 Uncharacterized conser 95.7 2.1 4.6E-05 40.9 28.2 270 242-535 89-368 (370)
412 PF12894 Apc4_WD40: Anaphase-p 95.6 0.045 9.8E-07 36.6 5.4 34 74-108 11-44 (47)
413 PF14870 PSII_BNR: Photosynthe 95.6 2.8 6.1E-05 41.6 28.2 152 378-533 142-301 (302)
414 KOG1898 Splicing factor 3b, su 95.5 6.1 0.00013 44.9 32.3 132 401-538 911-1050(1205)
415 KOG1916 Nuclear protein, conta 95.4 0.01 2.2E-07 64.3 2.9 214 234-492 127-372 (1283)
416 TIGR02604 Piru_Ver_Nterm putat 95.3 0.63 1.4E-05 48.4 15.9 145 381-528 14-205 (367)
417 PHA03098 kelch-like protein; P 95.1 0.76 1.6E-05 50.9 16.8 142 391-538 342-513 (534)
418 PF12234 Rav1p_C: RAVE protein 95.1 0.74 1.6E-05 50.2 15.7 111 381-493 30-155 (631)
419 PF05096 Glu_cyclase_2: Glutam 95.1 3.3 7.2E-05 39.7 25.0 95 251-346 138-249 (264)
420 PHA02790 Kelch-like protein; P 94.8 2.3 5E-05 46.1 18.9 183 296-497 271-473 (480)
421 PF15390 DUF4613: Domain of un 94.8 1.6 3.5E-05 46.0 16.2 159 282-451 19-185 (671)
422 KOG4499 Ca2+-binding protein R 94.4 4.1 8.9E-05 37.7 18.7 101 330-432 160-263 (310)
423 PF14870 PSII_BNR: Photosynthe 94.4 5.8 0.00013 39.4 29.4 108 419-527 141-253 (302)
424 KOG2280 Vacuolar assembly/sort 94.4 7.1 0.00015 42.7 20.2 72 29-105 42-113 (829)
425 KOG3630 Nuclear pore complex, 94.4 0.6 1.3E-05 52.8 12.9 153 329-482 102-261 (1405)
426 KOG4659 Uncharacterized conser 94.4 13 0.00029 43.4 30.3 30 150-179 409-438 (1899)
427 PF12234 Rav1p_C: RAVE protein 94.2 1.3 2.9E-05 48.3 15.0 112 422-535 29-155 (631)
428 PHA02790 Kelch-like protein; P 94.1 2.5 5.3E-05 45.9 17.2 140 390-538 317-472 (480)
429 PF08728 CRT10: CRT10; InterP 94.0 2.9 6.4E-05 46.2 17.1 113 381-494 101-246 (717)
430 smart00036 CNH Domain found in 93.9 8 0.00017 38.9 29.3 235 253-503 14-279 (302)
431 COG3823 Glutamine cyclotransfe 93.7 3.6 7.7E-05 37.4 14.0 171 298-482 57-247 (262)
432 PF14781 BBS2_N: Ciliary BBSom 93.4 3 6.6E-05 35.1 12.3 110 42-173 8-130 (136)
433 PF07995 GSDH: Glucose / Sorbo 93.4 10 0.00022 38.7 27.8 237 286-531 5-330 (331)
434 PF14781 BBS2_N: Ciliary BBSom 93.4 4.3 9.2E-05 34.2 13.4 122 198-322 6-132 (136)
435 KOG3616 Selective LIM binding 93.3 2.9 6.3E-05 45.2 14.9 77 421-502 336-413 (1636)
436 COG5167 VID27 Protein involved 93.3 1.8 3.9E-05 44.7 12.9 149 294-452 477-632 (776)
437 KOG2247 WD40 repeat-containing 93.2 0.1 2.2E-06 53.0 4.3 237 292-545 42-289 (615)
438 PF10168 Nup88: Nuclear pore c 93.2 18 0.0004 41.0 24.1 33 191-223 147-182 (717)
439 PRK13684 Ycf48-like protein; P 92.7 13 0.00028 38.0 29.9 151 380-535 172-330 (334)
440 PF10168 Nup88: Nuclear pore c 92.7 4.5 9.7E-05 45.7 16.5 71 381-452 85-179 (717)
441 PRK10115 protease 2; Provision 92.4 24 0.00051 40.3 31.3 234 292-538 134-396 (686)
442 KOG2280 Vacuolar assembly/sort 92.2 21 0.00046 39.3 28.8 54 422-476 216-271 (829)
443 PF07569 Hira: TUP1-like enhan 91.9 1.2 2.7E-05 42.0 9.6 66 470-536 16-95 (219)
444 TIGR02604 Piru_Ver_Nterm putat 91.9 7.1 0.00015 40.6 16.1 99 381-483 72-202 (367)
445 COG5167 VID27 Protein involved 91.9 6.9 0.00015 40.6 14.9 140 391-535 478-631 (776)
446 PF13449 Phytase-like: Esteras 91.8 13 0.00028 37.9 17.5 152 327-481 19-231 (326)
447 PF10313 DUF2415: Uncharacteri 91.6 0.82 1.8E-05 29.6 5.3 31 75-105 1-34 (43)
448 PF07569 Hira: TUP1-like enhan 91.5 4.1 9E-05 38.5 12.6 70 430-500 18-101 (219)
449 PF13449 Phytase-like: Esteras 91.5 13 0.00029 37.9 17.2 155 381-536 20-249 (326)
450 PF08728 CRT10: CRT10; InterP 91.3 8.3 0.00018 42.8 16.0 142 392-535 49-245 (717)
451 KOG3616 Selective LIM binding 91.1 7.2 0.00016 42.3 14.6 68 30-102 14-81 (1636)
452 PRK14131 N-acetylneuraminic ac 91.1 22 0.00048 37.2 19.2 40 488-527 314-353 (376)
453 PF10313 DUF2415: Uncharacteri 91.0 1.1 2.4E-05 29.1 5.4 31 423-453 1-34 (43)
454 COG4257 Vgb Streptogramin lyas 90.9 15 0.00033 35.1 16.0 187 330-538 64-264 (353)
455 COG4257 Vgb Streptogramin lyas 90.8 16 0.00034 35.0 19.0 223 294-537 71-306 (353)
456 PF15390 DUF4613: Domain of un 90.6 27 0.00059 37.4 24.8 165 75-272 20-188 (671)
457 PF11635 Med16: Mediator compl 90.3 40 0.00087 38.9 21.6 195 253-447 63-345 (753)
458 PF10214 Rrn6: RNA polymerase 90.2 42 0.00091 38.9 26.7 167 325-495 77-277 (765)
459 PRK13684 Ycf48-like protein; P 90.1 24 0.00053 36.1 28.3 151 327-492 172-329 (334)
460 PF05694 SBP56: 56kDa selenium 90.0 26 0.00056 36.4 26.2 125 3-127 91-256 (461)
461 PRK14131 N-acetylneuraminic ac 89.9 21 0.00046 37.3 17.6 15 307-321 189-203 (376)
462 KOG2377 Uncharacterized conser 89.5 16 0.00034 37.6 14.7 124 348-480 41-169 (657)
463 PF11715 Nup160: Nucleoporin N 89.4 6.2 0.00014 43.8 13.9 73 41-115 157-259 (547)
464 KOG1898 Splicing factor 3b, su 89.0 50 0.0011 38.1 27.5 66 47-112 552-626 (1205)
465 TIGR03118 PEPCTERM_chp_1 conse 88.9 24 0.00053 34.5 24.5 80 344-432 216-307 (336)
466 PF07995 GSDH: Glucose / Sorbo 88.8 30 0.00065 35.3 28.5 69 379-447 251-330 (331)
467 KOG1900 Nuclear pore complex, 88.2 7.3 0.00016 45.6 12.9 145 304-453 96-273 (1311)
468 KOG2377 Uncharacterized conser 88.0 11 0.00023 38.7 12.5 101 420-522 64-169 (657)
469 KOG2247 WD40 repeat-containing 87.9 0.075 1.6E-06 54.0 -2.2 143 381-528 35-180 (615)
470 TIGR03118 PEPCTERM_chp_1 conse 87.4 31 0.00066 33.9 24.0 218 292-516 30-307 (336)
471 PF11635 Med16: Mediator compl 87.3 63 0.0014 37.3 23.8 68 422-489 259-345 (753)
472 TIGR03547 muta_rot_YjhT mutatr 86.8 41 0.00089 34.7 22.1 42 487-528 291-332 (346)
473 TIGR02276 beta_rpt_yvtn 40-res 86.8 2.9 6.4E-05 26.9 5.7 40 84-123 1-41 (42)
474 COG5276 Uncharacterized conser 86.1 35 0.00075 33.2 27.7 222 251-493 137-368 (370)
475 KOG3380 Actin-related protein 85.8 9.7 0.00021 32.4 9.2 91 554-645 38-139 (152)
476 KOG1900 Nuclear pore complex, 85.6 9.8 0.00021 44.6 12.2 136 399-537 96-273 (1311)
477 PF11715 Nup160: Nucleoporin N 85.3 9.1 0.0002 42.5 12.1 72 390-461 156-257 (547)
478 PF12768 Rax2: Cortical protei 85.0 16 0.00035 35.9 12.1 115 9-126 15-147 (281)
479 PF12657 TFIIIC_delta: Transcr 84.4 5.8 0.00013 36.0 8.3 31 507-537 86-122 (173)
480 PF08801 Nucleoporin_N: Nup133 84.4 39 0.00085 36.0 16.0 31 465-495 190-220 (422)
481 TIGR02276 beta_rpt_yvtn 40-res 84.0 4.8 0.0001 25.9 5.7 40 474-514 1-41 (42)
482 COG4590 ABC-type uncharacteriz 84.0 15 0.00033 37.6 11.4 164 328-503 221-395 (733)
483 KOG1983 Tomosyn and related SN 83.9 43 0.00093 39.8 16.9 72 421-498 197-268 (993)
484 COG3292 Predicted periplasmic 83.5 68 0.0015 34.4 21.6 71 29-105 163-234 (671)
485 PF05935 Arylsulfotrans: Aryls 83.4 72 0.0016 34.6 19.9 117 386-506 153-313 (477)
486 COG4590 ABC-type uncharacteriz 82.9 6.6 0.00014 40.1 8.4 172 277-460 215-394 (733)
487 TIGR01063 gyrA DNA gyrase, A s 82.6 1E+02 0.0022 35.8 27.5 206 199-410 493-718 (800)
488 PF10433 MMS1_N: Mono-function 82.4 82 0.0018 34.5 38.1 260 199-474 219-503 (504)
489 PLN02193 nitrile-specifier pro 82.4 78 0.0017 34.3 19.5 135 391-527 228-387 (470)
490 KOG4460 Nuclear pore complex, 81.9 33 0.00071 36.1 12.9 74 382-455 105-201 (741)
491 KOG2063 Vacuolar assembly/sort 81.9 1E+02 0.0022 35.8 18.0 269 202-490 26-304 (877)
492 KOG1896 mRNA cleavage and poly 81.7 1.2E+02 0.0026 35.9 38.4 186 304-493 1001-1212(1366)
493 PF02333 Phytase: Phytase; In 81.6 68 0.0015 33.1 24.6 199 250-453 66-291 (381)
494 PF14761 HPS3_N: Hermansky-Pud 81.3 47 0.001 30.9 13.2 176 37-216 22-211 (215)
495 PF10395 Utp8: Utp8 family; I 81.2 96 0.0021 34.5 24.5 247 250-502 37-313 (670)
496 TIGR03548 mutarot_permut cycli 80.8 69 0.0015 32.6 21.5 64 391-455 123-197 (323)
497 PLN02153 epithiospecifier prot 80.5 73 0.0016 32.7 22.4 23 390-412 136-169 (341)
498 PF03022 MRJP: Major royal jel 80.5 65 0.0014 32.1 20.7 177 262-440 34-253 (287)
499 PF08801 Nucleoporin_N: Nup133 80.3 69 0.0015 34.1 16.0 31 507-537 190-220 (422)
500 PRK05560 DNA gyrase subunit A; 80.1 1.3E+02 0.0027 35.2 27.6 276 200-482 496-799 (805)
No 1
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=9.1e-99 Score=750.80 Aligned_cols=651 Identities=46% Similarity=0.770 Sum_probs=600.6
Q ss_pred EEEeecCCCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCe-eEEEecCccceeEEE
Q 004214 2 FALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK-CVATLDKHFSRVTSM 80 (768)
Q Consensus 2 ~latg~~dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~-~~~~l~~h~~~V~~l 80 (768)
++|+||.||.|+|||+..+.++|.|+||.+.|.++.|+|+-.+.+|++|..|++|++||+.+.. ++.++..|.+.|+++
T Consensus 119 LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL 198 (775)
T KOG0319|consen 119 LLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSL 198 (775)
T ss_pred eEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeee
Confidence 6899999999999999999999999999999999999999999999999999999999998554 588999999999999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCc
Q 004214 81 AITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERG 160 (768)
Q Consensus 81 ~fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 160 (768)
+|++|+..++++|+|..+.+||+.+.+...+.|.++.++++.+.+.+. +..+.+++++|++|
T Consensus 199 ~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~------------------~~~~~~~~TaG~~g 260 (775)
T KOG0319|consen 199 AFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREEL------------------GGKGEYIITAGGSG 260 (775)
T ss_pred eeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhc------------------CCcceEEEEecCCc
Confidence 999999999999999999999999999999999999999999888721 11144999999999
Q ss_pred EEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCC
Q 004214 161 IVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNE 240 (768)
Q Consensus 161 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (768)
.+++||.+++.......... ...+......+....+++++.++++.+|+.. ++.+.+.+.|+++
T Consensus 261 ~~~~~d~es~~~~~~~~~~~---------~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~-------~l~i~k~ivG~nd 324 (775)
T KOG0319|consen 261 VVQYWDSESGKCVYKQRQSD---------SEEIDHLLAIESMSQLLLVTAEQNLFLYDED-------ELTIVKQIVGYND 324 (775)
T ss_pred eEEEEecccchhhhhhccCC---------chhhhcceeccccCceEEEEccceEEEEEcc-------ccEEehhhcCCch
Confidence 99999999994443322211 1236777788899999999999999999765 5678889999999
Q ss_pred ceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCc---
Q 004214 241 EILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR--- 317 (768)
Q Consensus 241 ~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--- 317 (768)
+|.+|+|.+++.++++++++.+.+++|+..+..+. .+.+|...|.+++ .+..+ .+|++|++|.++++|.++.+
T Consensus 325 EI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~--~~~~g-~llat~sKD~svilWr~~~~~~~ 400 (775)
T KOG0319|consen 325 EILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLD--VWSSG-DLLATGSKDKSVILWRLNNNCSK 400 (775)
T ss_pred hheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeee--ecccC-cEEEEecCCceEEEEEecCCcch
Confidence 99999999999999999999999999999998887 9999999999997 56666 46999999999999977443
Q ss_pred -eEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEE
Q 004214 318 -CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVC 396 (768)
Q Consensus 318 -~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 396 (768)
.++....+|++.|.+++++..+..+|+++|.|+++++|+++...... .+.......+...|.+.|++++++|+.+++|
T Consensus 401 ~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~-~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiA 479 (775)
T KOG0319|consen 401 SLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETA-FPIVLTCRYTERAHDKDINCVAIAPNDKLIA 479 (775)
T ss_pred hhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCccccc-ccceehhhHHHHhhcccccceEecCCCceEE
Confidence 34566789999999999999999999999999999999998733222 2444555566788999999999999999999
Q ss_pred EEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCC
Q 004214 397 TGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRG 476 (768)
Q Consensus 397 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~ 476 (768)
+|+.|++.+||+++.+....++.||..+|+|+.|+|.++.++|+|.|++|+||.+.++.|+++|+||...|..+.|..+|
T Consensus 480 T~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~ 559 (775)
T KOG0319|consen 480 TGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNG 559 (775)
T ss_pred ecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCHHHHHHHHHHHHHHHHhhh
Q 004214 477 AQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAEREEAFRKEEEAVLRGQ 556 (768)
Q Consensus 477 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~ 556 (768)
++|++++.||.|++|++++++|+.++++|.+.||+++.+|.+.+++||+.||.|.+|...|.+...++.++++++++++|
T Consensus 560 ~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~Te~~~~ee~~K~~eaieq~Q 639 (775)
T KOG0319|consen 560 KQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVTEEEQNEEQEKREEAIEQEQ 639 (775)
T ss_pred cEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEeecCcHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcccchHHHHHHHhhcCCchhHHHHHHHHHhchhhHHHHHHHHhhcCHHHHHHHHHHHHHHhcCCCchHHHHHHH
Q 004214 557 ELENAVLDADYTKAIQVAFELRRPHKLFELFASVCRKREAELQIEKALHALGKEEIRQLLEYVREWNTKPKLCHVAQFVL 636 (768)
Q Consensus 557 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~~~~~~~~l 636 (768)
++++++.+++|.+|+.+|+.+.+|+..|.++...++++. +.++++++.+|+.++.+.||+|+.+|+||+|++.++|++|
T Consensus 640 eL~n~l~~~~~~~A~~LA~tLd~P~~~f~vi~~~~r~r~-~e~l~~av~~L~~dq~~~Ll~~~~~WnTnsk~c~vaQ~vL 718 (775)
T KOG0319|consen 640 ELENLLSQKRYTKAFVLALTLDKPHLVFTVINALYRERD-PEELGQAVFRLNEDQPEALLQFVVKWNTNSKTCHVAQRVL 718 (775)
T ss_pred HHHHHHhhhhhHHHHHhHhhccCchhHHHHHHHHHhcCC-cHHHHHHHHHhhhhhHHHHHHHHHHhcCCcchhHHHHHHH
Confidence 999999999999999999999999999999999988776 5689999999999999999999999999999999999999
Q ss_pred HHHhccCCcchhhcccChHhHHHhhccchHhHHHHHHHhHhhhhhhheecccccCC
Q 004214 637 FQLFNIHPPTEIIEIKGISDVLEGLIPYTQRHFSRIDRLVRSTFLLDYTLTGMSVI 692 (768)
Q Consensus 637 ~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~ 692 (768)
+.+|+.+.++++.+.|++.++++.|+||++|||+|++++.+..++|||++.+|+..
T Consensus 719 ~~~l~~~~p~el~~~~g~~~~~e~l~PYtqRHf~Rid~~~~~~~lLdf~~~eM~~~ 774 (775)
T KOG0319|consen 719 YEILKRVDPEELVRWPGSGEVVEALLPYTQRHFRRIDRLVQDSALLDFTWFEMRIS 774 (775)
T ss_pred HHHHhccChHHhhcccchHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHhhhheecC
Confidence 99999999999999999999999999999999999999999999999999999753
No 2
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=8.8e-69 Score=535.82 Aligned_cols=678 Identities=22% Similarity=0.356 Sum_probs=505.8
Q ss_pred EEEeecCCCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEE
Q 004214 2 FALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMA 81 (768)
Q Consensus 2 ~latg~~dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~ 81 (768)
+||+|.+||.|+||+..++....+|.||..+|+++.|...|.+ |+|||.|+.|.+||+....-+..++||...|+.+-
T Consensus 79 ~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~r--laSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~ 156 (888)
T KOG0306|consen 79 LLAVGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDKIGTR--LASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQAL 156 (888)
T ss_pred eEEEEecCceEEeeccCCCceeeeecccccceEEEEEcccCce--EeecCCCccEEEEEeccceeeEEeecchHHHhHHh
Confidence 5899999999999999999999999999999999999999998 99999999999999999999999999999999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCeeeeeeecc-eeEeeEEecCCC--------CCccccc------------------
Q 004214 82 ITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTY-EMVEAVCAIPPG--------SAFDSFL------------------ 134 (768)
Q Consensus 82 fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~-~~v~~~~~~~~~--------~~~~~~~------------------ 134 (768)
|..+.++|+++|.|+.|++||+++..|..+.-.+ ..+.++++.+.- ......+
T Consensus 157 F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~ 236 (888)
T KOG0306|consen 157 FLNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFEDDEKETNRYISTKLR 236 (888)
T ss_pred ccCCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEecceEEEEecCCceEEEEeecccccccccccceeecc
Confidence 9998999999999999999999999999887654 447777776620 0000000
Q ss_pred cccchh----hhhcccCCcceEEEEeeCCcEEEEEEcCCce-e---eee-----cCCce------e---------ecccc
Q 004214 135 SSYNQQ----TIKKKRRSLEIHFITVGERGIVRMWNADSAC-L---YEQ-----KSSDV------T---------ISFEM 186 (768)
Q Consensus 135 ~~~~~~----~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~-~---~~~-----~~~~~------~---------~~~~~ 186 (768)
+...++ ...........++++-+.|..+.++.+.+.. + ... +.... . .....
T Consensus 237 G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ 316 (888)
T KOG0306|consen 237 GTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLET 316 (888)
T ss_pred ceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHh
Confidence 000000 0011111223334444444444444443330 0 000 00000 0 00000
Q ss_pred cCcccceeEEEEccCCCc--eEEEEecCeEEEEeeccCcc--cceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCC
Q 004214 187 DDSKRGFTAATVLPSNQG--LLCVTADQQLLLYTTVEVPE--KKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIE 262 (768)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~--l~~~~~dg~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~ 262 (768)
......+..+.+.|.+.. .+....++.+.+|.+..... +...........||...|.+++++. ++.++..+..+
T Consensus 317 ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~--d~~~~~Sga~~ 394 (888)
T KOG0306|consen 317 IRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSS--DSILLASGAGE 394 (888)
T ss_pred eechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeec--CceeeeecCCC
Confidence 111123344455554433 35557889999998876221 2334445567889999999999984 33555555569
Q ss_pred cEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcE
Q 004214 263 QVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNF 342 (768)
Q Consensus 263 ~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 342 (768)
.+.+|+..+.++++++... .+.|.. +.|.+.+ +++|...|.+.+||+.+...+....+|.+.|++++.+|++. .
T Consensus 395 SikiWn~~t~kciRTi~~~--y~l~~~--Fvpgd~~-Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~-g 468 (888)
T KOG0306|consen 395 SIKIWNRDTLKCIRTITCG--YILASK--FVPGDRY-IVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNK-G 468 (888)
T ss_pred cEEEEEccCcceeEEeccc--cEEEEE--ecCCCce-EEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCC-c
Confidence 9999999999999998765 455543 6666665 99999999999999999999999999999999999999977 6
Q ss_pred EEEEeCCCeEEEEeCCCCCCCCccc---cccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEe
Q 004214 343 LVSGSSDHTIKVWSFDGLSDDAEQP---MNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFR 419 (768)
Q Consensus 343 l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 419 (768)
+++||.|.+|++||+......+... ...+.. ....-...|.|+.+||||++||++--|.++++|-+++.+...++.
T Consensus 469 ~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~-rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLY 547 (888)
T KOG0306|consen 469 FVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHT-RTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLY 547 (888)
T ss_pred eEEecCCcEEEEEeEEEEeccCcccceeeeeccc-eEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeec
Confidence 9999999999999986443211110 111111 123346789999999999999999999999999999999999999
Q ss_pred ccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEE
Q 004214 420 GHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECI 499 (768)
Q Consensus 420 ~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 499 (768)
||.-||.|+.+|||+++++|||.|++|+||-++-|.|.+.+.+|...|+++.|.|....++++|.||.|+-||-...+++
T Consensus 548 GHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~i 627 (888)
T KOG0306|consen 548 GHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEI 627 (888)
T ss_pred ccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCHHH----HHHHHHHHHHH--HHhh------------------
Q 004214 500 ATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAE----REEAFRKEEEA--VLRG------------------ 555 (768)
Q Consensus 500 ~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~~~----~~~~~~~~~~~--~~~~------------------ 555 (768)
+++.+|...|++++.+|+|.+++++|.|..|++|+...+.. .++.+++++.+ +..+
T Consensus 628 q~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~tde~~~lEeekE~ErEe~yE~l~~~~e~~~~~~~~~g~~~~~sk 707 (888)
T KOG0306|consen 628 QKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTDEILILEEEKEGEREEEYETLLASEEVVAGDGSADGDAGVASK 707 (888)
T ss_pred eeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccCcceeeehhhhhhhHHHHHHhhhhcccccCCCcccccccchhh
Confidence 99999999999999999999999999999999999877322 22211111111 0000
Q ss_pred hHHHHhhcccchHHHHHHHhh---------cCCch-hHHHHHH--------HHHhchhhHHHHHHHHhhcCHHHHHHHHH
Q 004214 556 QELENAVLDADYTKAIQVAFE---------LRRPH-KLFELFA--------SVCRKREAELQIEKALHALGKEEIRQLLE 617 (768)
Q Consensus 556 ~~~~~~~~~~~~~~a~~~~~~---------~~~~~-~~~~~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~ll~ 617 (768)
+.++......+..+|++++.+ +..|. .++..+. .. -.+.+..+++.++.-||++++..+|+
T Consensus 708 kTieSvk~aE~i~ea~di~~~e~~~~ee~~~g~P~npll~a~~ks~e~yi~dt-l~~Ir~S~Ld~aLlllPfS~V~~vl~ 786 (888)
T KOG0306|consen 708 KTIESVKSAERILEALDIGREELTQLEEYSPGHPHNPLLNAYNKSPEKYIVDT-LMKIRASELDDALLLLPFSYVLDVLK 786 (888)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhHHhhcCCCCCcHHHHHhcCCHHHHHHHH-HHhcchhhhhhhheeccHHHHHHHHH
Confidence 111122222223334332221 11222 1111111 11 12234568999999999999999999
Q ss_pred HHHHHhcCCCchHHHHHHHHHHhccCCcchhhcccChHhHHHhhccchHhHHHHHHHhHhhhhhhheecccccCCCcchh
Q 004214 618 YVREWNTKPKLCHVAQFVLFQLFNIHPPTEIIEIKGISDVLEGLIPYTQRHFSRIDRLVRSTFLLDYTLTGMSVIEPDTE 697 (768)
Q Consensus 618 ~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ 697 (768)
++..|+.++...+++.+++..|+++| ...+...+++.+.|+.+...+.+-. -|+.+.+.+|++.+++.+..-+
T Consensus 787 ~i~~~~q~~~~veLv~rv~~fL~rih-~~~it~~~~~kp~l~~i~s~l~~~v------~q~rdv~G~NlagL~~l~~E~e 859 (888)
T KOG0306|consen 787 FIDECIQRKSKVELVCRVLFFLLRIH-HKQITAHKNMKPLLEKIKSKLREIV------EQLRDVLGFNLAGLSLLKQEWE 859 (888)
T ss_pred HHHHHHcCCCcceeEeeeeeehhhhh-hhhhccccchHHHHHHHHHHHHHHH------HHhhhhhhhhhhHHHHHHHhhh
Confidence 99999999999999999999999999 6688889999999999988888544 4566666999999998764333
Q ss_pred h
Q 004214 698 A 698 (768)
Q Consensus 698 ~ 698 (768)
+
T Consensus 860 ~ 860 (888)
T KOG0306|consen 860 D 860 (888)
T ss_pred c
Confidence 3
No 3
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.5e-62 Score=491.55 Aligned_cols=636 Identities=21% Similarity=0.328 Sum_probs=504.7
Q ss_pred EEEeecCCCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCC--------eeEEEecCc
Q 004214 2 FALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK--------KCVATLDKH 73 (768)
Q Consensus 2 ~latg~~dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~--------~~~~~l~~h 73 (768)
++++....|...+-+......+|.+. .+.+|.|+.|||||++ +|.|. ...+.||..... ...+++.+|
T Consensus 69 lllavdE~g~~~lvs~~~r~Vlh~f~-fk~~v~~i~fSPng~~--fav~~-gn~lqiw~~P~~~~~~~~pFvl~r~~~g~ 144 (893)
T KOG0291|consen 69 LLLAVDERGRALLVSLLSRSVLHRFN-FKRGVGAIKFSPNGKF--FAVGC-GNLLQIWHAPGEIKNEFNPFVLHRTYLGH 144 (893)
T ss_pred EEEEEcCCCcEEEEecccceeeEEEe-ecCccceEEECCCCcE--EEEEe-cceeEEEecCcchhcccCcceEeeeecCC
Confidence 34455566666777776666667665 6789999999999986 55543 567999987432 234667889
Q ss_pred cceeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeee--ecc-eeEeeEEecCCCCCccccccccchhhhhcccCCcc
Q 004214 74 FSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTV--PTY-EMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLE 150 (768)
Q Consensus 74 ~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~--~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (768)
...|+++.|+.|.++|++++.|..+++|++...+..... ..+ ..+.+..|..+..
T Consensus 145 fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~---------------------- 202 (893)
T KOG0291|consen 145 FDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSL---------------------- 202 (893)
T ss_pred ccceeEEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcc----------------------
Confidence 999999999999999999999999999999887764433 233 3455555554433
Q ss_pred eEEEEeeCCcEEEEEEcCCceeeeecC----------------Cc--------eeecccccCcccceeEEEEccCCCceE
Q 004214 151 IHFITVGERGIVRMWNADSACLYEQKS----------------SD--------VTISFEMDDSKRGFTAATVLPSNQGLL 206 (768)
Q Consensus 151 ~~~~~~~~~g~i~iwd~~~~~~~~~~~----------------~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~ 206 (768)
.+++.+.||.+.+|............ .+ .....-.......++++.|++....++
T Consensus 203 -~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lv 281 (893)
T KOG0291|consen 203 -DLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLV 281 (893)
T ss_pred -eEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEE
Confidence 79999999999999887331100000 00 000111122235678888999999999
Q ss_pred EEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeC-CCcEEEEECCCceeeeeeeCCccce
Q 004214 207 CVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATN-IEQVQVYDLSSMSCSYVLAGHSEIV 285 (768)
Q Consensus 207 ~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-~~~i~i~d~~~~~~~~~~~~~~~~v 285 (768)
++-..|.+.+|.++. ..+...+.-...+|..+.|+. .+.++|.|+. -|++.||+.++...+...++|...+
T Consensus 282 vgFssG~f~LyelP~-------f~lih~LSis~~~I~t~~~N~-tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i 353 (893)
T KOG0291|consen 282 VGFSSGEFGLYELPD-------FNLIHSLSISDQKILTVSFNS-TGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRI 353 (893)
T ss_pred EEecCCeeEEEecCC-------ceEEEEeecccceeeEEEecc-cCCEEEEcCCccceEEEEEeeccceeeeccccccce
Confidence 999999999999874 445556666677899999974 6778888776 4899999999999999999999999
Q ss_pred EEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCc
Q 004214 286 LCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAE 365 (768)
Q Consensus 286 ~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 365 (768)
.|++ ++|++.. +++|+.||.|++||..++-|..++..|+..|+.+.|+..+. .+++.+-||+|+.||+.....
T Consensus 354 ~~l~--YSpDgq~-iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~-~llssSLDGtVRAwDlkRYrN--- 426 (893)
T KOG0291|consen 354 TSLA--YSPDGQL-IATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGN-VLLSSSLDGTVRAWDLKRYRN--- 426 (893)
T ss_pred eeEE--ECCCCcE-EEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCC-EEEEeecCCeEEeeeecccce---
Confidence 9998 7777765 99999999999999999999999999999999999999966 799999999999999985432
Q ss_pred cccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCC-cEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCC
Q 004214 366 QPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDR-TACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDK 444 (768)
Q Consensus 366 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~ 444 (768)
.............|++..|.|.++++|+.|. .|.+|++++|+.+-.+.||++||.+++|+|++..|++++.|.
T Consensus 427 ------fRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDk 500 (893)
T KOG0291|consen 427 ------FRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDK 500 (893)
T ss_pred ------eeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccc
Confidence 1111222344568999999999999999887 599999999999999999999999999999999999999999
Q ss_pred cEEEEeCCCC-ceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEecc-------------------
Q 004214 445 TIKIWSISDG-SCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDK------------------- 504 (768)
Q Consensus 445 ~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~------------------- 504 (768)
+||+||+-.. ..+.++. +...++.++|+|+|+.|+++..||.|.+||+..+..+.++++
T Consensus 501 TVRiW~if~s~~~vEtl~-i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~s 579 (893)
T KOG0291|consen 501 TVRIWDIFSSSGTVETLE-IRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENS 579 (893)
T ss_pred eEEEEEeeccCceeeeEe-eccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhc
Confidence 9999998654 3445555 788899999999999999999999999999988766655432
Q ss_pred -CCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCHHHHHH--------------HH--------------HHH----HHH
Q 004214 505 -HEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAEREE--------------AF--------------RKE----EEA 551 (768)
Q Consensus 505 -~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~--------------~~--------------~~~----~~~ 551 (768)
.....+.+++|+||.++++||....|++|++.++...+. .. ..+ +..
T Consensus 580 a~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfqiS~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~~ 659 (893)
T KOG0291|consen 580 AKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKKFQISDNRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEGR 659 (893)
T ss_pred ccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheeeeEEeccccchhHHHHHhccccccccCCcccccccccccccc
Confidence 224578999999999999999999999999887654311 00 000 000
Q ss_pred H--------------------------------------------------------------HhhhHHHHhhcccchHH
Q 004214 552 V--------------------------------------------------------------LRGQELENAVLDADYTK 569 (768)
Q Consensus 552 ~--------------------------------------------------------------~~~~~~~~~~~~~~~~~ 569 (768)
+ .........+...+|.+
T Consensus 660 i~~~lpG~~~gdlssRr~rpeIrv~sv~fsPtgraFAaatTEGl~IYsld~~~~FDPf~LD~~vTPe~v~~al~~qey~~ 739 (893)
T KOG0291|consen 660 IDIALPGVQRGDLSSRRFRPEIRVTSVQFSPTGRAFAAATTEGLLIYSLDTTILFDPFDLDVDVTPESVREALREQEYLK 739 (893)
T ss_pred ccccCCccccCCccccccCceEEEEEEEECCCcCeeeeecccceEEEecCCceEEcccccccccCHHHHHHHHhcchHHH
Confidence 0 00123557788889999
Q ss_pred HHHHHhhcCCchhHHHHHHHHHhchhhHHHHHHHHhhcCHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhccCCcchhh
Q 004214 570 AIQVAFELRRPHKLFELFASVCRKREAELQIEKALHALGKEEIRQLLEYVREWNTKPKLCHVAQFVLFQLFNIHPPTEII 649 (768)
Q Consensus 570 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 649 (768)
|+.+++++|.+..+.+++++++.. .++.+...||..++++||++|.+.+.+++|.++++.|+++||..||.....
T Consensus 740 AlvmslRLNe~~lI~evlesvp~~-----~Ie~V~~~Lp~~y~erll~~l~~~l~~s~HieF~l~W~~~il~~hG~~~~~ 814 (893)
T KOG0291|consen 740 ALVMSLRLNEYKLIKEVLESVPIK-----DIELVASSLPTAYLERLLKALSRFLENSPHIEFYLRWLRAILTYHGSSLKR 814 (893)
T ss_pred HHHHHHhcCHHHHHHHHHHhCChh-----hhhhhhhcCcHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHhhhhhhc
Confidence 999999999998888888888665 799999999999999999999999999999999999999999999986556
Q ss_pred cccChHhHHHhhccchHhHHHHHHHhHh-hhhhhheecccccC
Q 004214 650 EIKGISDVLEGLIPYTQRHFSRIDRLVR-STFLLDYTLTGMSV 691 (768)
Q Consensus 650 ~~~~~~~~l~~l~~~~~~~~~~~~~l~~-~~~~l~~~~~~~~~ 691 (768)
....+.++|.+|++.+.||.+.+.+|+. .++.|.|++..++.
T Consensus 815 ~~~~~~~~~~~lqk~i~r~~~~l~kl~~~Nky~L~~lv~~~~~ 857 (893)
T KOG0291|consen 815 RAETLLPALTSLQKSIVRHIDDLSKLCSLNKYTLRYLVSKRQS 857 (893)
T ss_pred cceehhhHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHhhhhh
Confidence 6667888999999999999999999994 34445555444433
No 4
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.4e-54 Score=434.30 Aligned_cols=488 Identities=21% Similarity=0.353 Sum_probs=408.3
Q ss_pred EEEeecCCCcEEEEECCCCEEEEEEEc-CCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEE
Q 004214 2 FALLEGADRKVLVWDVDGGFCTHYFKG-HKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSM 80 (768)
Q Consensus 2 ~latg~~dg~i~vwd~~~~~~~~~l~g-h~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l 80 (768)
+|++++....+++|++++|++++..+. |+++|.-|+|+|.|.. +++|+.||.|+|||+..+.+.+.|+||.+.|.++
T Consensus 76 ~L~~a~rs~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g~L--lAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl 153 (775)
T KOG0319|consen 76 VLVTASRSQLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTGTL--LATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSL 153 (775)
T ss_pred EEEEeeccceEEEEEcccchHhHhHhhccCCCeEEEEEcCCCce--EEeccccceEEEEEeeCCEEEEEecCCCceEEEE
Confidence 688899999999999999999999998 9999999999998854 9999999999999999999999999999999999
Q ss_pred EEcCCCCE--EEEEeCCCeEEEEECCCCee-eeee-ecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEe
Q 004214 81 AITSDGST--LISAGRDKVVNLWDLRDYSC-KLTV-PTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITV 156 (768)
Q Consensus 81 ~fs~d~~~--L~s~~~dg~i~vWd~~~~~~-~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (768)
.|.|+-.+ |++++.|+++++||+.+... +.+. .+...+.++.+.+++. .++++
T Consensus 154 ~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~-----------------------~~ls~ 210 (775)
T KOG0319|consen 154 LFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSL-----------------------ELLSV 210 (775)
T ss_pred EeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCc-----------------------eEEEe
Confidence 99997654 88999999999999996554 4444 3456689999999865 78999
Q ss_pred eCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccC-----CCceEEEEecCeEEEEeeccCcccceeeEE
Q 004214 157 GERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPS-----NQGLLCVTADQQLLLYTTVEVPEKKMELIL 231 (768)
Q Consensus 157 ~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~ 231 (768)
|.|..+.+||+..-+....... ...+-.+.+.+. +..+++++.+|.++.|+...........
T Consensus 211 ~RDkvi~vwd~~~~~~l~~lp~-----------ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~-- 277 (775)
T KOG0319|consen 211 GRDKVIIVWDLVQYKKLKTLPL-----------YESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQR-- 277 (775)
T ss_pred ccCcEEEEeehhhhhhhheech-----------hhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhc--
Confidence 9999999999955422111110 122333334444 5678999999999999987654211111
Q ss_pred EeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEE
Q 004214 232 SKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRL 311 (768)
Q Consensus 232 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~i 311 (768)
.. ...++..+...+ ....++..+.+..+.+||..+.+....+.|..+.|..+. +..+....++.+++.+.+++
T Consensus 278 ---~~-~~~e~~~~~~~~-~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~--~lG~e~~~laVATNs~~lr~ 350 (775)
T KOG0319|consen 278 ---QS-DSEEIDHLLAIE-SMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMK--FLGPEESHLAVATNSPELRL 350 (775)
T ss_pred ---cC-Cchhhhcceecc-ccCceEEEEccceEEEEEccccEEehhhcCCchhheeee--ecCCccceEEEEeCCCceEE
Confidence 11 023355666654 344566666779999999999999999999999999987 77777677999999999999
Q ss_pred EeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccC
Q 004214 312 WDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN 391 (768)
Q Consensus 312 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 391 (768)
|+..+..+. .+.+|+..|.++....+| .+|++|+.|.++++|.++.... ...+.....+|...|.+++++..
T Consensus 351 y~~~~~~c~-ii~GH~e~vlSL~~~~~g-~llat~sKD~svilWr~~~~~~------~~~~~a~~~gH~~svgava~~~~ 422 (775)
T KOG0319|consen 351 YTLPTSYCQ-IIPGHTEAVLSLDVWSSG-DLLATGSKDKSVILWRLNNNCS------KSLCVAQANGHTNSVGAVAGSKL 422 (775)
T ss_pred EecCCCceE-EEeCchhheeeeeecccC-cEEEEecCCceEEEEEecCCcc------hhhhhhhhcccccccceeeeccc
Confidence 999887766 789999999999966665 4899999999999999843321 33345556789999999999874
Q ss_pred -CCEEEEEeCCCcEEEEeCCCCce---EE------EEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEee
Q 004214 392 -DSLVCTGSQDRTACVWRLPDLVS---VV------TFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFE 461 (768)
Q Consensus 392 -~~~l~~~~~dg~i~i~d~~~~~~---~~------~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~ 461 (768)
..+|++++.|+++++|+++..+. .. +...|...|+|++++|+..++||||.|++.+||++..+..+.++.
T Consensus 423 ~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLs 502 (775)
T KOG0319|consen 423 GASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLS 502 (775)
T ss_pred CccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEee
Confidence 46899999999999999976221 11 234699999999999999999999999999999999999999999
Q ss_pred cCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCHHHH
Q 004214 462 GHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAER 541 (768)
Q Consensus 462 ~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~~~~ 541 (768)
||...|.++.|+|..+.++|+|.|++|+||.+.++.|++++.+|...|....|-.+|..|++++.||.+++|++++.+..
T Consensus 503 GH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~ 582 (775)
T KOG0319|consen 503 GHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECE 582 (775)
T ss_pred CCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998875
Q ss_pred H
Q 004214 542 E 542 (768)
Q Consensus 542 ~ 542 (768)
.
T Consensus 583 ~ 583 (775)
T KOG0319|consen 583 M 583 (775)
T ss_pred h
Confidence 4
No 5
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.4e-56 Score=410.95 Aligned_cols=369 Identities=27% Similarity=0.438 Sum_probs=316.4
Q ss_pred EEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEE
Q 004214 21 FCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNL 100 (768)
Q Consensus 21 ~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~v 100 (768)
+|...+.||.++|-|++|+|+|.+ |++|+.|.++++||+.+..++++.++|...|.|++|+|||+.||||+.||.|++
T Consensus 106 rCssS~~GH~e~Vl~~~fsp~g~~--l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~l 183 (480)
T KOG0271|consen 106 RCSSSIAGHGEAVLSVQFSPTGSR--LVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRL 183 (480)
T ss_pred eeccccCCCCCcEEEEEecCCCce--EEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEE
Confidence 456688899999999999999998 999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCce
Q 004214 101 WDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDV 180 (768)
Q Consensus 101 Wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~ 180 (768)
||.++|+++
T Consensus 184 wdpktg~~~----------------------------------------------------------------------- 192 (480)
T KOG0271|consen 184 WDPKTGQQI----------------------------------------------------------------------- 192 (480)
T ss_pred ecCCCCCcc-----------------------------------------------------------------------
Confidence 998877532
Q ss_pred eecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEec----CCCCEEE
Q 004214 181 TISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLG----EEEQYLA 256 (768)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~l~ 256 (768)
.+.+.+|...|++++|-| +...+||
T Consensus 193 ---------------------------------------------------g~~l~gH~K~It~Lawep~hl~p~~r~la 221 (480)
T KOG0271|consen 193 ---------------------------------------------------GRALRGHKKWITALAWEPLHLVPPCRRLA 221 (480)
T ss_pred ---------------------------------------------------cccccCcccceeEEeecccccCCCcccee
Confidence 134556777788888854 5667999
Q ss_pred EEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEe
Q 004214 257 VATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFS 336 (768)
Q Consensus 257 ~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~ 336 (768)
+++.||.++|||+..+.++..+.+|+.+|+|+. +. |..++++|+.|++|++|+...|.+.+.+++|...|..++.+
T Consensus 222 s~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvr---wG-G~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lals 297 (480)
T KOG0271|consen 222 SSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVR---WG-GEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALS 297 (480)
T ss_pred cccCCCCEEEEEccCceEEEEeccCccceEEEE---Ec-CCceEEecCCCceEEEEEccchhHHHhhcccchheeeeecc
Confidence 999999999999999999999999999999996 23 33469999999999999999999999999999999999998
Q ss_pred cCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC-CceE
Q 004214 337 KKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPD-LVSV 415 (768)
Q Consensus 337 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~-~~~~ 415 (768)
.+. .|-+|..|.+=+-..... ....+....+ ....-..+..+++|+.|.++.+|+... .+++
T Consensus 298 Tdy--~LRtgaf~~t~~~~~~~s-------e~~~~Al~rY--------~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi 360 (480)
T KOG0271|consen 298 TDY--VLRTGAFDHTGRKPKSFS-------EEQKKALERY--------EAVLKDSGERLVSGSDDFTLFLWNPFKSKKPI 360 (480)
T ss_pred chh--hhhccccccccccCCChH-------HHHHHHHHHH--------HHhhccCcceeEEecCCceEEEecccccccch
Confidence 762 355554443211111000 0000000000 001112457899999999999999754 4588
Q ss_pred EEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCC
Q 004214 416 VTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRT 495 (768)
Q Consensus 416 ~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 495 (768)
..+.+|..-|+.+.||||++++|+++-|+.|++||.++|+.+.+|+||-.+|..++|+.|.++|++|+.|.++++|++++
T Consensus 361 ~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~t 440 (480)
T KOG0271|consen 361 TRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRT 440 (480)
T ss_pred hhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeee
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004214 496 GECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 534 (768)
Q Consensus 496 ~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~ 534 (768)
.+....+.+|.+.|.++.|+|||..+++|+.|..+++|.
T Consensus 441 kKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 441 KKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred eeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 999999999999999999999999999999999999995
No 6
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.4e-50 Score=371.22 Aligned_cols=345 Identities=24% Similarity=0.385 Sum_probs=289.8
Q ss_pred EEEeecCCCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeE-EEecCccceeEEE
Q 004214 2 FALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCV-ATLDKHFSRVTSM 80 (768)
Q Consensus 2 ~latg~~dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~-~~l~~h~~~V~~l 80 (768)
.||+|+-|.++++||+.+....++.+||...|.|++|+|||+. ||+|+.||+|++||..+|+++ ..|.+|...|+++
T Consensus 129 ~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~--iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~L 206 (480)
T KOG0271|consen 129 RLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKK--IASGSKDGSIRLWDPKTGQQIGRALRGHKKWITAL 206 (480)
T ss_pred eEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcch--hhccccCCeEEEecCCCCCcccccccCcccceeEE
Confidence 6899999999999999999999999999999999999999999 999999999999999999876 6789999999999
Q ss_pred EEcC-----CCCEEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEE
Q 004214 81 AITS-----DGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFIT 155 (768)
Q Consensus 81 ~fs~-----d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (768)
+|-| ..++|++++.||.|+|||+..+.++..
T Consensus 207 awep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~-------------------------------------------- 242 (480)
T KOG0271|consen 207 AWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRT-------------------------------------------- 242 (480)
T ss_pred eecccccCCCccceecccCCCCEEEEEccCceEEEE--------------------------------------------
Confidence 9965 678999999999999999977654433
Q ss_pred eeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeee
Q 004214 156 VGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRL 235 (768)
Q Consensus 156 ~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~ 235 (768)
+
T Consensus 243 -------------------------------------------------------------------------------l 243 (480)
T KOG0271|consen 243 -------------------------------------------------------------------------------L 243 (480)
T ss_pred -------------------------------------------------------------------------------e
Confidence 3
Q ss_pred cccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCC
Q 004214 236 VGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSE 315 (768)
Q Consensus 236 ~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~ 315 (768)
.||..+|+|++|- .+.++++++.|++|++|+...|.+.+.+.+|...|+.++ .+. .+.|-+|..|.+=+-....
T Consensus 244 sgHT~~VTCvrwG--G~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~la--lsT--dy~LRtgaf~~t~~~~~~~ 317 (480)
T KOG0271|consen 244 SGHTASVTCVRWG--GEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLA--LST--DYVLRTGAFDHTGRKPKSF 317 (480)
T ss_pred ccCccceEEEEEc--CCceEEecCCCceEEEEEccchhHHHhhcccchheeeee--ccc--hhhhhccccccccccCCCh
Confidence 4677788999985 456999999999999999999999999999999999986 222 2235555443221111100
Q ss_pred CceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEE
Q 004214 316 SRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLV 395 (768)
Q Consensus 316 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 395 (768)
+ +... ..-. .- -+..+++...+++|+.|.++.+|+... ..++.....+|..-|+.+.||||++++
T Consensus 318 s-e~~~--~Al~-rY--~~~~~~~~erlVSgsDd~tlflW~p~~---------~kkpi~rmtgHq~lVn~V~fSPd~r~I 382 (480)
T KOG0271|consen 318 S-EEQK--KALE-RY--EAVLKDSGERLVSGSDDFTLFLWNPFK---------SKKPITRMTGHQALVNHVSFSPDGRYI 382 (480)
T ss_pred H-HHHH--HHHH-HH--HHhhccCcceeEEecCCceEEEecccc---------cccchhhhhchhhheeeEEECCCccEE
Confidence 0 0000 0000 00 011233345799999999999998653 333556678899999999999999999
Q ss_pred EEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeC
Q 004214 396 CTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTR 475 (768)
Q Consensus 396 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~ 475 (768)
|+++.|+.|++|+.++|+.+.+|+||-.+|..++|+.|.++|++|+.|.++++|++++.+....+.||...|.++.|+||
T Consensus 383 ASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspD 462 (480)
T KOG0271|consen 383 ASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPD 462 (480)
T ss_pred EEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEeCCCcEEEEE
Q 004214 476 GAQIVSCGADGLVKLWT 492 (768)
Q Consensus 476 ~~~l~s~~~dg~i~iwd 492 (768)
|..+++|+.|..+++|.
T Consensus 463 G~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 463 GQRVASGGKDKVLRLWR 479 (480)
T ss_pred CceeecCCCceEEEeec
Confidence 99999999999999994
No 7
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=3e-45 Score=353.16 Aligned_cols=492 Identities=18% Similarity=0.279 Sum_probs=393.0
Q ss_pred CEEEeecCCCcEEEEECCCCE--EEEEEEcCCCcEEEEEEeeCCCccEEEEE-eCCCcEEEEECCCCeeEEEecCcccee
Q 004214 1 MFALLEGADRKVLVWDVDGGF--CTHYFKGHKGVVSSILFHPDTDKSLLFSG-SDDATVRVWDLLAKKCVATLDKHFSRV 77 (768)
Q Consensus 1 ~~latg~~dg~i~vwd~~~~~--~~~~l~gh~~~V~~l~~spd~~~~~l~sg-~~dg~I~iWd~~~~~~~~~l~~h~~~V 77 (768)
.|+|+|...|+|+|||..... +...++.-.++|..++|++|+++ ++|+| +.+...+++-+.+|..+..+.||...|
T Consensus 72 ~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~R-I~avGEGrerfg~~F~~DSG~SvGei~GhSr~i 150 (603)
T KOG0318|consen 72 FYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKR-IAAVGEGRERFGHVFLWDSGNSVGEITGHSRRI 150 (603)
T ss_pred eEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcE-EEEEecCccceeEEEEecCCCccceeeccceeE
Confidence 389999999999999996533 33467778999999999999987 33333 334444555555899999999999999
Q ss_pred EEEEEcCCCC-EEEEEeCCCeEEEEECCCCeeeeeeecce-eEeeEEecCCCCCccccccccchhhhhcccCCcceEEEE
Q 004214 78 TSMAITSDGS-TLISAGRDKVVNLWDLRDYSCKLTVPTYE-MVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFIT 155 (768)
Q Consensus 78 ~~l~fs~d~~-~L~s~~~dg~i~vWd~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (768)
.++.|-|... +++|++.|++|.+|+=.-.+...++..+. .+.++.++|+|+ .|++
T Consensus 151 ns~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~-----------------------~Fat 207 (603)
T KOG0318|consen 151 NSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGS-----------------------RFAT 207 (603)
T ss_pred eeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCC-----------------------eEEE
Confidence 9999999776 58999999999999988888777776554 589999999998 8999
Q ss_pred eeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeee
Q 004214 156 VGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRL 235 (768)
Q Consensus 156 ~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~ 235 (768)
+|.||.+.+||-.++........ ...+...+.++.++|++.++++++.|.++++|+.....-.. ++.....
T Consensus 208 ~gsDgki~iyDGktge~vg~l~~-------~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~-t~~~~~~- 278 (603)
T KOG0318|consen 208 AGSDGKIYIYDGKTGEKVGELED-------SDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVS-TWPMGST- 278 (603)
T ss_pred ecCCccEEEEcCCCccEEEEecC-------CCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEE-EeecCCc-
Confidence 99999999999999955443322 34567899999999999999999999999999998763111 1111111
Q ss_pred cccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCC
Q 004214 236 VGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSE 315 (768)
Q Consensus 236 ~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~ 315 (768)
..+.-..+.|- ...|++-+-+|.|.+++...+.....+.+|...|+++. ..+++.. |++|+.||.|.-|+..
T Consensus 279 --v~dqqvG~lWq---kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLt--v~~d~~~-i~SgsyDG~I~~W~~~ 350 (603)
T KOG0318|consen 279 --VEDQQVGCLWQ---KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALT--VSPDGKT-IYSGSYDGHINSWDSG 350 (603)
T ss_pred --hhceEEEEEEe---CCeEEEEEcCcEEEEecccCCChhheecccccceeEEE--EcCCCCE-EEeeccCceEEEEecC
Confidence 22344555553 55888888899999999999999999999999999998 7777755 9999999999999999
Q ss_pred CceEEEee-ecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCcc--ccccc-------------------ee
Q 004214 316 SRCCVGVG-TGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQ--PMNLK-------------------AK 373 (768)
Q Consensus 316 ~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~~-------------------~~ 373 (768)
++..-+.. .+|...|.+++.+..+. +++.+.|.++++.++......... ..... ..
T Consensus 351 ~g~~~~~~g~~h~nqI~~~~~~~~~~--~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~i 428 (603)
T KOG0318|consen 351 SGTSDRLAGKGHTNQIKGMAASESGE--LFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDI 428 (603)
T ss_pred CccccccccccccceEEEEeecCCCc--EEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcE
Confidence 88766554 78999999999988544 899999999999987544222111 00000 01
Q ss_pred eEee--------ccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCc--eEEEEeccCCCeEEEEEccCCCEEEEeeCC
Q 004214 374 AVVA--------AHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLV--SVVTFRGHKRGIWSVEFSPVDQVVITASGD 443 (768)
Q Consensus 374 ~~~~--------~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d 443 (768)
..+. .-.-...+++++|++..+++|+.||.|++|.+.... ....+..|..+|++++||||+.+||++...
T Consensus 429 v~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~ 508 (603)
T KOG0318|consen 429 VLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDAS 508 (603)
T ss_pred EEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccC
Confidence 1111 112345789999999999999999999999998654 344566799999999999999999999999
Q ss_pred CcEEEEeCCCCceeEE-eecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCe-EEEEeccCCCcEEEEEEcCCCCEE
Q 004214 444 KTIKIWSISDGSCLKT-FEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE-CIATYDKHEDKIWALAVGKKTEMF 521 (768)
Q Consensus 444 ~~i~iwd~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~l~~s~~~~~l 521 (768)
+.+.+||+.+.+.... +.-|...|.+++|+|+..++|+|+-|-.|.||+++... -+....+|...|+.+.|- +...+
T Consensus 509 rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wl-de~tv 587 (603)
T KOG0318|consen 509 RKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWL-DESTV 587 (603)
T ss_pred CcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEeccccccCceeEEEe-cCceE
Confidence 9999999998876433 33499999999999999999999999999999998754 344456799999999997 56689
Q ss_pred EEEeCCCcEEEEEcC
Q 004214 522 ATGGSDALVNLWHDS 536 (768)
Q Consensus 522 ~s~~~dg~v~vw~~~ 536 (768)
++.|.|..|++|++.
T Consensus 588 vSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 588 VSSGQDANIKVWNVT 602 (603)
T ss_pred EeccCcceeEEeccc
Confidence 999999999999864
No 8
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.8e-45 Score=366.08 Aligned_cols=483 Identities=17% Similarity=0.273 Sum_probs=401.2
Q ss_pred cCCCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCC
Q 004214 7 GADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDG 86 (768)
Q Consensus 7 ~~dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~ 86 (768)
..++.|.|+|..+.+-....-.+...|++++.||+|.. +++....|...+-++.....++.+. ...+|.++.|||||
T Consensus 32 PvGNrvsv~dLknN~S~Tl~~e~~~NI~~ialSp~g~l--llavdE~g~~~lvs~~~r~Vlh~f~-fk~~v~~i~fSPng 108 (893)
T KOG0291|consen 32 PVGNRVSVFDLKNNKSYTLPLETRYNITRIALSPDGTL--LLAVDERGRALLVSLLSRSVLHRFN-FKRGVGAIKFSPNG 108 (893)
T ss_pred ccCCEEEEEEccCCcceeEEeecCCceEEEEeCCCceE--EEEEcCCCcEEEEecccceeeEEEe-ecCccceEEECCCC
Confidence 45788999999887644444468999999999999987 8888999999999998888888877 56779999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCee--------eeee-ecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEee
Q 004214 87 STLISAGRDKVVNLWDLRDYSC--------KLTV-PTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVG 157 (768)
Q Consensus 87 ~~L~s~~~dg~i~vWd~~~~~~--------~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (768)
+++|.+.. +.+.||....... ..++ .+...+.++.|+.+.. .+++++
T Consensus 109 ~~fav~~g-n~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr-----------------------~l~~gs 164 (893)
T KOG0291|consen 109 KFFAVGCG-NLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSR-----------------------LLVTGS 164 (893)
T ss_pred cEEEEEec-ceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCc-----------------------eEEecc
Confidence 98887764 6799998754322 1122 2334578888888775 899999
Q ss_pred CCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccc-----------
Q 004214 158 ERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKK----------- 226 (768)
Q Consensus 158 ~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~----------- 226 (768)
.|-..++|.++...- ...+....+...+..+.|..+...+++++.||.+.+|.....|...
T Consensus 165 rD~s~rl~~v~~~k~--------~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~ 236 (893)
T KOG0291|consen 165 RDLSARLFGVDGNKN--------LFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSD 236 (893)
T ss_pred ccceEEEEEeccccc--------cceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccc
Confidence 999999999876622 1223345566788888899999999999999999999887332110
Q ss_pred ---------------eeeEEEe-eecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEee
Q 004214 227 ---------------MELILSK-RLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDT 290 (768)
Q Consensus 227 ---------------~~~~~~~-~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~ 290 (768)
......+ -+......+++.+|+ +....|++|-.+|...+|.+....++..+.-...+|..+.
T Consensus 237 d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH-~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~- 314 (893)
T KOG0291|consen 237 DEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFH-KGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVS- 314 (893)
T ss_pred cccccccchhhhcceEEEEEEeeeecccccceeeeecc-CCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEE-
Confidence 0011111 122223678888887 4778999999999999999999999999998888999987
Q ss_pred eeecCCCEEEEEE-eCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccc
Q 004214 291 CALSSGKILIVTG-SKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMN 369 (768)
Q Consensus 291 ~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 369 (768)
+...|.+ ++.| +.-|.+-+|+.++...+...++|...+++++++|||+ ++++|+.||.|++||...
T Consensus 315 -~N~tGDW-iA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq-~iaTG~eDgKVKvWn~~S---------- 381 (893)
T KOG0291|consen 315 -FNSTGDW-IAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQ-LIATGAEDGKVKVWNTQS---------- 381 (893)
T ss_pred -ecccCCE-EEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCc-EEEeccCCCcEEEEeccC----------
Confidence 7788888 5555 4559999999999999999999999999999999987 899999999999999874
Q ss_pred cceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccC-CCeEEEEEccCCCEEEEeeCCC-cEE
Q 004214 370 LKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHK-RGIWSVEFSPVDQVVITASGDK-TIK 447 (768)
Q Consensus 370 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~v~~v~~s~~~~~l~t~~~d~-~i~ 447 (768)
.-+..++..|...|+++.|+..|+.+++++.||+|+.||+...+..+++.... ....|++..|.|.++.+|+.|. .|.
T Consensus 382 gfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~If 461 (893)
T KOG0291|consen 382 GFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIF 461 (893)
T ss_pred ceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEE
Confidence 34788889999999999999999999999999999999999999888887643 3568899999999999998875 599
Q ss_pred EEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCC-eEEEEeccCCCcEEEEEEcCCCCEEEEEeC
Q 004214 448 IWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTG-ECIATYDKHEDKIWALAVGKKTEMFATGGS 526 (768)
Q Consensus 448 iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~ 526 (768)
+|++++|+.+-.+.||.++|.+++|+|.|..|++++.|.+|++||+-.. ..+.++. +...+.+++|+|+|+.|+++..
T Consensus 462 vWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrPdG~elaVaTl 540 (893)
T KOG0291|consen 462 VWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRPDGKELAVATL 540 (893)
T ss_pred EEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEe-eccceeEEEEcCCCCeEEEEEe
Confidence 9999999999999999999999999999999999999999999998654 3455665 7788999999999999999999
Q ss_pred CCcEEEEEcCCHHH
Q 004214 527 DALVNLWHDSTAAE 540 (768)
Q Consensus 527 dg~v~vw~~~~~~~ 540 (768)
||.|.+||...+..
T Consensus 541 dgqItf~d~~~~~q 554 (893)
T KOG0291|consen 541 DGQITFFDIKEAVQ 554 (893)
T ss_pred cceEEEEEhhhcee
Confidence 99999999876543
No 9
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=7.6e-45 Score=350.35 Aligned_cols=484 Identities=16% Similarity=0.207 Sum_probs=383.4
Q ss_pred ecCCCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCee--EEEecCccceeEEEEEc
Q 004214 6 EGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKC--VATLDKHFSRVTSMAIT 83 (768)
Q Consensus 6 g~~dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~--~~~l~~h~~~V~~l~fs 83 (768)
+..+..|.+-++++...+..+.+|..+++-..|||.|.+ +|+|...|+|||||....+. ..+++.-.++|..|+|+
T Consensus 35 Y~nGksv~ir~i~~~~~~~iYtEH~~~vtVAkySPsG~y--iASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd 112 (603)
T KOG0318|consen 35 YTNGKSVIIRNIDNPASVDIYTEHAHQVTVAKYSPSGFY--IASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWD 112 (603)
T ss_pred EeCCCEEEEEECCCccceeeeccccceeEEEEeCCCceE--EeecCCcCcEEEEeccCcceeeeeeeeecccccccceeC
Confidence 456788999999999999999999999999999999876 99999999999999865433 35567788999999999
Q ss_pred CCCCEEEEEeC--CCeEEEEECCCCeeeeeeeccee-EeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCc
Q 004214 84 SDGSTLISAGR--DKVVNLWDLRDYSCKLTVPTYEM-VEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERG 160 (768)
Q Consensus 84 ~d~~~L~s~~~--dg~i~vWd~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 160 (768)
+|+++++..|. +...+++-+.+|..+..+..+.. +.++.|-|.. +.+++++++|+
T Consensus 113 ~ds~RI~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsR----------------------PfRi~T~sdDn 170 (603)
T KOG0318|consen 113 FDSKRIAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSR----------------------PFRIATGSDDN 170 (603)
T ss_pred CCCcEEEEEecCccceeEEEEecCCCccceeeccceeEeeeeccCCC----------------------ceEEEeccCCC
Confidence 99999998874 33334444445666666665554 5666666544 34899999999
Q ss_pred EEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCC
Q 004214 161 IVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNE 240 (768)
Q Consensus 161 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (768)
.+.+|+-. +.........+..-+.++.|+|++..+++++.||.+.+|+-.... ..-......+|.+
T Consensus 171 ~v~ffeGP----------PFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge----~vg~l~~~~aHkG 236 (603)
T KOG0318|consen 171 TVAFFEGP----------PFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGE----KVGELEDSDAHKG 236 (603)
T ss_pred eEEEeeCC----------CeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCcc----EEEEecCCCCccc
Confidence 99998643 223334445566788899999999999999999999999988764 2222333568999
Q ss_pred ceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEE
Q 004214 241 EILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCV 320 (768)
Q Consensus 241 ~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 320 (768)
.|..++|+| +...+++++.|.+++|||+.+.++++++......-...-.|.+. +.. |++.+-+|.|.+++.....++
T Consensus 237 sIfalsWsP-Ds~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq-kd~-lItVSl~G~in~ln~~d~~~~ 313 (603)
T KOG0318|consen 237 SIFALSWSP-DSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ-KDH-LITVSLSGTINYLNPSDPSVL 313 (603)
T ss_pred cEEEEEECC-CCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe-CCe-EEEEEcCcEEEEecccCCChh
Confidence 999999995 88899999999999999999999998886544311111122344 334 899999999999999999999
Q ss_pred EeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeC
Q 004214 321 GVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ 400 (768)
Q Consensus 321 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 400 (768)
..+.+|...|+++..+|+++ +|++|+.||.|.-|+...+... ...-..|...|.+++.+..+. +++.+.
T Consensus 314 ~~i~GHnK~ITaLtv~~d~~-~i~SgsyDG~I~~W~~~~g~~~---------~~~g~~h~nqI~~~~~~~~~~-~~t~g~ 382 (603)
T KOG0318|consen 314 KVISGHNKSITALTVSPDGK-TIYSGSYDGHINSWDSGSGTSD---------RLAGKGHTNQIKGMAASESGE-LFTIGW 382 (603)
T ss_pred heecccccceeEEEEcCCCC-EEEeeccCceEEEEecCCcccc---------ccccccccceEEEEeecCCCc-EEEEec
Confidence 99999999999999999985 8999999999999999865321 122256888899998876554 566677
Q ss_pred CCcEEEEeCCCCc------------e-------------------EEEEecc--------CCCeEEEEEccCCCEEEEee
Q 004214 401 DRTACVWRLPDLV------------S-------------------VVTFRGH--------KRGIWSVEFSPVDQVVITAS 441 (768)
Q Consensus 401 dg~i~i~d~~~~~------------~-------------------~~~~~~~--------~~~v~~v~~s~~~~~l~t~~ 441 (768)
|.++++.++.... + +..++.+ .....+++++|++..+++|+
T Consensus 383 Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG 462 (603)
T KOG0318|consen 383 DDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGG 462 (603)
T ss_pred CCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEec
Confidence 8888888763210 0 0111111 23467899999999999999
Q ss_pred CCCcEEEEeCCCCce--eEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEe-ccCCCcEEEEEEcCCC
Q 004214 442 GDKTIKIWSISDGSC--LKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATY-DKHEDKIWALAVGKKT 518 (768)
Q Consensus 442 ~d~~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~l~~s~~~ 518 (768)
.|+.|+||.+..+.. ...+..|.++|++++||||+.||++|...+.+.+||+.+.+..... --|...|.+++|+|+.
T Consensus 463 ~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n 542 (603)
T KOG0318|consen 463 QDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNN 542 (603)
T ss_pred ccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCc
Confidence 999999999977553 3355679999999999999999999999999999999998874433 3399999999999999
Q ss_pred CEEEEEeCCCcEEEEEcCCHHHH
Q 004214 519 EMFATGGSDALVNLWHDSTAAER 541 (768)
Q Consensus 519 ~~l~s~~~dg~v~vw~~~~~~~~ 541 (768)
.++|||+-|-.|.||+++.+...
T Consensus 543 ~~vATGSlDt~Viiysv~kP~~~ 565 (603)
T KOG0318|consen 543 KLVATGSLDTNVIIYSVKKPAKH 565 (603)
T ss_pred eEEEeccccceEEEEEccChhhh
Confidence 99999999999999999876543
No 10
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1e-44 Score=363.63 Aligned_cols=482 Identities=21% Similarity=0.338 Sum_probs=376.8
Q ss_pred EeecCCCcEEEEECCCCEEEEEEE--cCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEE
Q 004214 4 LLEGADRKVLVWDVDGGFCTHYFK--GHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMA 81 (768)
Q Consensus 4 atg~~dg~i~vwd~~~~~~~~~l~--gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~ 81 (768)
++++....|.+||+.+|.....+. .-...|+|++-+|+... ||.|..||.|+||+..++....++.||...|+.+.
T Consensus 37 va~~a~E~vn~WdlRtge~~~~l~~~~~k~evt~l~~~~d~l~--lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~ 114 (888)
T KOG0306|consen 37 VAVSALEQVNIWDLRTGEIEKKLILLKKKAEVTCLRSSDDILL--LAVGYADGSVQIFSLESEEILITFNGHKAAVTTLK 114 (888)
T ss_pred EEEeccccEeEEeeecchhhhhhhhhcccceEEEeeccCCcce--EEEEecCceEEeeccCCCceeeeecccccceEEEE
Confidence 344567789999999996555443 34568999999997655 99999999999999999999999999999999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCeeeeeeecce-eEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCc
Q 004214 82 ITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYE-MVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERG 160 (768)
Q Consensus 82 fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 160 (768)
|...|..|+|||.|+.|.+||+-.......+..+. .+...-|..... .+++.+.|+
T Consensus 115 fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~-----------------------~lvS~sKDs 171 (888)
T KOG0306|consen 115 FDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDS-----------------------FLVSVSKDS 171 (888)
T ss_pred EcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCCe-----------------------EEEEeccCc
Confidence 99999999999999999999998888888877644 455555555333 899999999
Q ss_pred EEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccc--------------
Q 004214 161 IVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKK-------------- 226 (768)
Q Consensus 161 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~-------------- 226 (768)
.|++||+++...+..... +...+..+++.+ ..+++++.++.+.+|++.......
T Consensus 172 ~iK~WdL~tqhCf~Thvd----------~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~ 239 (888)
T KOG0306|consen 172 MIKFWDLETQHCFETHVD----------HRGEIWALVLDE--KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTF 239 (888)
T ss_pred eEEEEecccceeeeEEec----------ccceEEEEEEec--ceEEEEecCCceEEEEeecccccccccccceeecccee
Confidence 999999999955433222 224455555555 788888899999999882221110
Q ss_pred --------eeeEE-------------------------------Ee-----------------------------eeccc
Q 004214 227 --------MELIL-------------------------------SK-----------------------------RLVGY 238 (768)
Q Consensus 227 --------~~~~~-------------------------------~~-----------------------------~~~~~ 238 (768)
.++.. .+ .....
T Consensus 240 ~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~ 319 (888)
T KOG0306|consen 240 IRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRT 319 (888)
T ss_pred eeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheec
Confidence 00000 00 00001
Q ss_pred CCceeEEEEecCCCCE-EEEEeCCCcEEEEECCCceee---------eeeeCCccceEEEeeeeecCCCEEEEEEeCCCe
Q 004214 239 NEEILDLKFLGEEEQY-LAVATNIEQVQVYDLSSMSCS---------YVLAGHSEIVLCLDTCALSSGKILIVTGSKDNS 308 (768)
Q Consensus 239 ~~~i~~~~~~~~~~~~-l~~~~~~~~i~i~d~~~~~~~---------~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~ 308 (768)
...+.++.+.+..+.. .++...++.+..|.++..... ..+.+|...|.+++ ++.+ ..++++| ..+.
T Consensus 320 ~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~--vS~d-~~~~~Sg-a~~S 395 (888)
T KOG0306|consen 320 SAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLC--VSSD-SILLASG-AGES 395 (888)
T ss_pred hhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEE--eecC-ceeeeec-CCCc
Confidence 2334455555433222 233356678888877652211 35679999999996 4444 4434444 4679
Q ss_pred EEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEE
Q 004214 309 VRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAV 388 (768)
Q Consensus 309 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 388 (768)
+++|+..+.++++++.. +.+.+..|.|.+. ++++|...|.+.+||+... .......+|.+.|.+++.
T Consensus 396 ikiWn~~t~kciRTi~~--~y~l~~~Fvpgd~-~Iv~G~k~Gel~vfdlaS~----------~l~Eti~AHdgaIWsi~~ 462 (888)
T KOG0306|consen 396 IKIWNRDTLKCIRTITC--GYILASKFVPGDR-YIVLGTKNGELQVFDLASA----------SLVETIRAHDGAIWSISL 462 (888)
T ss_pred EEEEEccCcceeEEecc--ccEEEEEecCCCc-eEEEeccCCceEEEEeehh----------hhhhhhhccccceeeeee
Confidence 99999999999998874 3888999999855 8999999999999999843 344555689999999999
Q ss_pred ccCCCEEEEEeCCCcEEEEeCCC-----CceEEEEe-------ccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCce
Q 004214 389 APNDSLVCTGSQDRTACVWRLPD-----LVSVVTFR-------GHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSC 456 (768)
Q Consensus 389 s~~~~~l~~~~~dg~i~i~d~~~-----~~~~~~~~-------~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~ 456 (768)
+||++.+++|+.|.+|++||+.- +.....+. .-...|.|+.+||||++|+++--|.+|+||-+++-+.
T Consensus 463 ~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKF 542 (888)
T KOG0306|consen 463 SPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKF 542 (888)
T ss_pred cCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceee
Confidence 99999999999999999999741 11111111 1356799999999999999999999999999999999
Q ss_pred eEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 004214 457 LKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDS 536 (768)
Q Consensus 457 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~ 536 (768)
.-++.||.-||.++.+|||++.++||+.|.+|+||-++-|.|.+.+.+|.+.|.++.|-|....+.++|.||.|+-||-.
T Consensus 543 flsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~ 622 (888)
T KOG0306|consen 543 FLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGE 622 (888)
T ss_pred eeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred CHH
Q 004214 537 TAA 539 (768)
Q Consensus 537 ~~~ 539 (768)
.-+
T Consensus 623 kFe 625 (888)
T KOG0306|consen 623 KFE 625 (888)
T ss_pred hhh
Confidence 433
No 11
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.2e-46 Score=360.51 Aligned_cols=430 Identities=20% Similarity=0.313 Sum_probs=370.6
Q ss_pred cccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCC
Q 004214 236 VGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSE 315 (768)
Q Consensus 236 ~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~ 315 (768)
....+.|.+++|+|..+..+|++++ -.+.+|+..+....+.+......+.+++ +-++|. ++++|...|.|++||+.
T Consensus 23 ~ke~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~~srFk~~v~s~~--fR~DG~-LlaaGD~sG~V~vfD~k 98 (487)
T KOG0310|consen 23 HKEHNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKTFSRFKDVVYSVD--FRSDGR-LLAAGDESGHVKVFDMK 98 (487)
T ss_pred ccccCcceeEecCCCCCCceEEecc-cEEEEEecchhhhhhhHHhhccceeEEE--eecCCe-EEEccCCcCcEEEeccc
Confidence 3446789999999988888888776 7899999999998888888899999987 666666 49999999999999988
Q ss_pred CceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEcc-CCCE
Q 004214 316 SRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP-NDSL 394 (768)
Q Consensus 316 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~ 394 (768)
+...++.+.+|+.++..+.|+|.+...+++|+.|+.+++||+.+. .......+|.+.|.|.+|+| ++.+
T Consensus 99 ~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a----------~v~~~l~~htDYVR~g~~~~~~~hi 168 (487)
T KOG0310|consen 99 SRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTA----------YVQAELSGHTDYVRCGDISPANDHI 168 (487)
T ss_pred cHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCc----------EEEEEecCCcceeEeeccccCCCeE
Confidence 888889999999999999999999999999999999999999853 23557789999999999999 5679
Q ss_pred EEEEeCCCcEEEEeCCCC-ceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCC-ceeEEeecCCCcEEEEEE
Q 004214 395 VCTGSQDRTACVWRLPDL-VSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG-SCLKTFEGHTSSVLRASF 472 (768)
Q Consensus 395 l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~~~~ 472 (768)
+++|++||.|++||++.. ..+.++. |..+|.++.+-|.|..++++++ ..|+|||+.+| +.+..+..|...|||+++
T Consensus 169 vvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l 246 (487)
T KOG0310|consen 169 VVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRL 246 (487)
T ss_pred EEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEe
Confidence 999999999999999987 5566665 9999999999999999999987 78999999855 555666669999999999
Q ss_pred EeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCHHHHHHHH-------
Q 004214 473 LTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAEREEAF------- 545 (768)
Q Consensus 473 s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~------- 545 (768)
..++..|++|+-||.|++||+.+.+.+..+. ..++|.+++.+|+++.++.|..||.+.+-+....++.....
T Consensus 247 ~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~k~k~s~~~~~r~~r~ 325 (487)
T KOG0310|consen 247 ASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREVKKKPSKEPKRRADRS 325 (487)
T ss_pred ecCCceEeecccccceEEEEccceEEEEeee-cccceeeEEecCCCceEEEecccceeeeehhhcccCCCcccccccccc
Confidence 9999999999999999999999999999997 88999999999999999999999998887544332211100
Q ss_pred ------------HH-------HHHHHHhhhHHHHhhcccchHHHHHHHhh-cCCchhHHHHHHHHHhchhhHHHHHHHHh
Q 004214 546 ------------RK-------EEEAVLRGQELENAVLDADYTKAIQVAFE-LRRPHKLFELFASVCRKREAELQIEKALH 605 (768)
Q Consensus 546 ------------~~-------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 605 (768)
.. ++..-.+...++..+..++|.+|++.+++ ...| +++.+++.+..+++.+..|+.
T Consensus 326 ~~~~v~~r~~~~~~~~ddiv~n~~~r~~L~~~Dk~Lk~F~~kkALd~vl~~~~~p----elvvavl~eL~~Rg~l~~AL~ 401 (487)
T KOG0310|consen 326 DGFFVKVRGQNYKGQKDDIVVNEVKRLKLTYFDKRLKQFKHKKALDHVLEPKKDP----ELVVAVLSELVHRGGLRRALA 401 (487)
T ss_pred ccceEeeeccccccccceeEeccccccCCchHHHHHhhhhHHHHHHHHhcccCCh----hHHHHHHHHHHHhhHHHHHhc
Confidence 00 00011234568889999999999999999 4455 445556666667779999999
Q ss_pred hcCHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhccCCcchhhcccChHhHHHhhccchHhHHHHHHHhHhhhhhhhee
Q 004214 606 ALGKEEIRQLLEYVREWNTKPKLCHVAQFVLFQLFNIHPPTEIIEIKGISDVLEGLIPYTQRHFSRIDRLVRSTFLLDYT 685 (768)
Q Consensus 606 ~l~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~ 685 (768)
++++.++..||.||.+.++.+|++.++..|...||.+|+.. +...|.+.+.++.|...++++..-.+++++..|+||++
T Consensus 402 grde~eL~~lLnfl~~~l~~~rf~~~L~~~~~~iLd~Y~~~-i~~s~~l~k~i~~L~~~V~~Ev~~q~ellr~~G~ldmL 480 (487)
T KOG0310|consen 402 GRDESELAPLLNFLVKNLTVVRFASILMEVVSVILDLYARD-IEGSPMLAKLIQALRGKVEQEVRVQKELLRLIGMLDML 480 (487)
T ss_pred CccHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHhh-hccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999774 77789999999999999999999999999999999998
Q ss_pred cc
Q 004214 686 LT 687 (768)
Q Consensus 686 ~~ 687 (768)
..
T Consensus 481 ~~ 482 (487)
T KOG0310|consen 481 GS 482 (487)
T ss_pred hH
Confidence 73
No 12
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=1.6e-44 Score=359.28 Aligned_cols=519 Identities=18% Similarity=0.244 Sum_probs=404.4
Q ss_pred EeecCCCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEe--CCCcEEEEECCCCeeEEEecCccceeEEEE
Q 004214 4 LLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGS--DDATVRVWDLLAKKCVATLDKHFSRVTSMA 81 (768)
Q Consensus 4 atg~~dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~--~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~ 81 (768)
+++-++-.|.+||++....-|.+..|..+++|++|||+|++ +|+|- ....++||++.....+..|..|...|+|++
T Consensus 52 ~aYpAGCvVVlfn~~~~tQ~hlvnssRk~~t~vAfS~~Gry--vatGEcG~~pa~kVw~la~h~vVAEfvdHKY~vtcva 129 (1080)
T KOG1408|consen 52 CAYPAGCVVVLFNVDSCTQSHLVNSSRKPLTCVAFSQNGRY--VATGECGRTPASKVWSLAFHGVVAEFVDHKYNVTCVA 129 (1080)
T ss_pred eeeccCcEEEEEcccccchhheecccCcceeEEEEcCCCcE--EEecccCCCccceeeeeccccchhhhhhccccceeee
Confidence 34556778999999999888888899999999999999998 99985 677899999999999999999999999999
Q ss_pred EcCCCCEEEEEeC--CCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCcccc--------------------------
Q 004214 82 ITSDGSTLISAGR--DKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSF-------------------------- 133 (768)
Q Consensus 82 fs~d~~~L~s~~~--dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-------------------------- 133 (768)
|+|.++|+++.|. |-.|.+|||+.......-.....+..++|+.+++.+...
T Consensus 130 Fsp~~kyvvSVGsQHDMIVnv~dWr~N~~~asnkiss~Vsav~fsEdgSYfvT~gnrHvk~wyl~~~~KykdpiPl~gRs 209 (1080)
T KOG1408|consen 130 FSPGNKYVVSVGSQHDMIVNVNDWRVNSSGASNKISSVVSAVAFSEDGSYFVTSGNRHVKLWYLQIQSKYKDPIPLPGRS 209 (1080)
T ss_pred ecCCCcEEEeeccccceEEEhhhhhhcccccccccceeEEEEEEccCCceeeeeeeeeEEEEEeeccccccCCccccchh
Confidence 9999999999885 567899999877766666677778888888888643211
Q ss_pred --ccccch------------------------------------------hhhhcccCCcceEEEEeeCCcEEEEEEcCC
Q 004214 134 --LSSYNQ------------------------------------------QTIKKKRRSLEIHFITVGERGIVRMWNADS 169 (768)
Q Consensus 134 --~~~~~~------------------------------------------~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~ 169 (768)
++.... ............++++++.+|.|++|+..+
T Consensus 210 ~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs~r~I~cgCa~g~vrlFnp~t 289 (1080)
T KOG1408|consen 210 YFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICVSSRLIACGCAKGMVRLFNPET 289 (1080)
T ss_pred hhccccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeeeecceEEEeeccceeeecCcch
Confidence 000000 000001111456789999999999999887
Q ss_pred ceeeeecCCceee--------------cccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeee
Q 004214 170 ACLYEQKSSDVTI--------------SFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRL 235 (768)
Q Consensus 170 ~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~ 235 (768)
-............ ............++.|.+..+.+.|+..|..+++|++.+.... -.....
T Consensus 290 L~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kv----gk~~s~ 365 (1080)
T KOG1408|consen 290 LDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKV----GKCSSM 365 (1080)
T ss_pred hhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEcCceEEEEeccccccc----cceeee
Confidence 7333221111110 1111112234567789999999999999999999999876532 223344
Q ss_pred cccCCceeEEEEecC----------CCCEEEEEeCCCcEEEEECCCceeee-----------------------------
Q 004214 236 VGYNEEILDLKFLGE----------EEQYLAVATNIEQVQVYDLSSMSCSY----------------------------- 276 (768)
Q Consensus 236 ~~~~~~i~~~~~~~~----------~~~~l~~~~~~~~i~i~d~~~~~~~~----------------------------- 276 (768)
..|...|.++.-.|- -...+.+++.|++|++|++..+..-.
T Consensus 366 lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~ 445 (1080)
T KOG1408|consen 366 LYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASA 445 (1080)
T ss_pred eeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccC
Confidence 556666666655441 12468999999999999997621100
Q ss_pred --------eeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecC--CCcEEEEE
Q 004214 277 --------VLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKK--LQNFLVSG 346 (768)
Q Consensus 277 --------~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~s~ 346 (768)
........+.+++ .+|++.. |++|..-|.+++|++..-+....+..|...|.|+.++.. +..+|+++
T Consensus 446 ~~fdka~~s~~d~r~G~R~~~--vSp~gqh-LAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASa 522 (1080)
T KOG1408|consen 446 GIFDKALVSTCDSRFGFRALA--VSPDGQH-LASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASA 522 (1080)
T ss_pred CcccccchhhcCcccceEEEE--ECCCcce-ecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhc
Confidence 0112344577776 7777776 999999999999999999999999999999999999853 34589999
Q ss_pred eCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCC--CEEEEEeCCCcEEEEeCCCCceEEEEec----
Q 004214 347 SSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND--SLVCTGSQDRTACVWRLPDLVSVVTFRG---- 420 (768)
Q Consensus 347 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~---- 420 (768)
+.|.-|.+||+.. ......++.+|...|+++.|..+| ..+++++.|+.|.+--.+.......+..
T Consensus 523 srdRlIHV~Dv~r---------ny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t 593 (1080)
T KOG1408|consen 523 SRDRLIHVYDVKR---------NYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQT 593 (1080)
T ss_pred cCCceEEEEeccc---------ccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccc
Confidence 9999999999874 445677788999999999999987 7889999998876644332211122222
Q ss_pred -cCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeec---CCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCC
Q 004214 421 -HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEG---HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTG 496 (768)
Q Consensus 421 -~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 496 (768)
....+..++..|..+++++++.|+.|+|||+.+|+..+.|++ |.+....+...|.|.||++.+.|.++.++|.-+|
T Consensus 594 ~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sg 673 (1080)
T KOG1408|consen 594 LSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSG 673 (1080)
T ss_pred cccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccc
Confidence 234688999999999999999999999999999999999984 6778889999999999999999999999999999
Q ss_pred eEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCHHH
Q 004214 497 ECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAE 540 (768)
Q Consensus 497 ~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~~~ 540 (768)
+|+.+..+|...|+.+.|.+|.+.|++.+.||.|.||.+.....
T Consensus 674 EcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~~mi 717 (1080)
T KOG1408|consen 674 ECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPLTMI 717 (1080)
T ss_pred hhhhhhcCcchheeeeeecccchhheeecCCceEEEEECchhHh
Confidence 99999999999999999999999999999999999999987443
No 13
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=8.5e-43 Score=354.17 Aligned_cols=488 Identities=17% Similarity=0.241 Sum_probs=396.6
Q ss_pred EEEeecCCCcEEEEECCCC-----EEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccce
Q 004214 2 FALLEGADRKVLVWDVDGG-----FCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSR 76 (768)
Q Consensus 2 ~latg~~dg~i~vwd~~~~-----~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~ 76 (768)
++.++..++.+.||+..++ .....++.-.+.|+++ +||....+-++.|+.+|.+.+||+.+++.+++++++...
T Consensus 126 ~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital-~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~ 204 (910)
T KOG1539|consen 126 HLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITAL-LHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSR 204 (910)
T ss_pred eEEEEEccCcEEEEEeccccccccccceeeeccCCceeeE-ecchhheeeEEEeecCCcEEEEEeccCcEEEEecccccc
Confidence 4667788999999999874 1112233333348887 688877777999999999999999999999999999999
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeeeecc-eeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEE
Q 004214 77 VTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTY-EMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFIT 155 (768)
Q Consensus 77 V~~l~fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (768)
|+++.-+|-=..++.|..+|+|.+++++.++.+.++... ..+.++.|..+|.. .+++
T Consensus 205 IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p----------------------~las 262 (910)
T KOG1539|consen 205 ITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNP----------------------LLAS 262 (910)
T ss_pred eeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCe----------------------eEEe
Confidence 999999998889999999999999999999999999996 88999999999873 6888
Q ss_pred eeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeee
Q 004214 156 VGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRL 235 (768)
Q Consensus 156 ~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~ 235 (768)
++..|.+.+||++...+..... ..+..++....+.|....+++.+.|+.+++|-...+... ....+..
T Consensus 263 ~~~~G~m~~wDLe~kkl~~v~~---------nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~---pR~LR~R 330 (910)
T KOG1539|consen 263 GRSNGDMAFWDLEKKKLINVTR---------NAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGV---PRLLRSR 330 (910)
T ss_pred ccCCceEEEEEcCCCeeeeeee---------ccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCc---chheeec
Confidence 8889999999999885543322 123467788889999999999999999999877754432 3345667
Q ss_pred cccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeee------------------eeCCccceEEEeeeee--cC
Q 004214 236 VGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYV------------------LAGHSEIVLCLDTCAL--SS 295 (768)
Q Consensus 236 ~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~------------------~~~~~~~v~~l~~~~~--~~ 295 (768)
.||..+..++.|...++..+..++.|+..+.+++.....-+. ....-.+|..+++... ..
T Consensus 331 ~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~ 410 (910)
T KOG1539|consen 331 GGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKE 410 (910)
T ss_pred cCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhh
Confidence 899999999999999999999999999999988753221110 0112234444431111 11
Q ss_pred CCEEEEEEeCCCeEEEEeCCCceEEE-ee-----ecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccc
Q 004214 296 GKILIVTGSKDNSVRLWDSESRCCVG-VG-----TGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMN 369 (768)
Q Consensus 296 ~~~~l~~~~~dg~i~iwd~~~~~~~~-~~-----~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 369 (768)
..+.++..-.+...+.|++++...-+ .+ +.....+++++.++.|+ +.+.|...|+|-+|++.++-...
T Consensus 411 W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGN-F~~IG~S~G~Id~fNmQSGi~r~----- 484 (910)
T KOG1539|consen 411 WDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGN-FVFIGYSKGTIDRFNMQSGIHRK----- 484 (910)
T ss_pred hcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCc-eEEEeccCCeEEEEEcccCeeec-----
Confidence 22335555567789999998765422 22 22347899999999976 88999999999999998653211
Q ss_pred cceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEE
Q 004214 370 LKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIW 449 (768)
Q Consensus 370 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iw 449 (768)
.......|..+|++++.+.-++.+++++.+|.+++||+.+...+..++ -..+++++..+....+++.+..|-.|+++
T Consensus 485 --sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~-l~~~~~~iv~hr~s~l~a~~~ddf~I~vv 561 (910)
T KOG1539|consen 485 --SFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLR-LGSSITGIVYHRVSDLLAIALDDFSIRVV 561 (910)
T ss_pred --ccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeec-cCCCcceeeeeehhhhhhhhcCceeEEEE
Confidence 111225799999999999999999999999999999999988777776 46678899999999999999999999999
Q ss_pred eCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCC-C
Q 004214 450 SISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSD-A 528 (768)
Q Consensus 450 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~d-g 528 (768)
|..+.+.++.|.||.+.|++++|||||++|++++.|++|++||+.++.++..+. -..+.+++.|||+|.+|||...| .
T Consensus 562 D~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~-vd~~~~sls~SPngD~LAT~Hvd~~ 640 (910)
T KOG1539|consen 562 DVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL-VDSPCTSLSFSPNGDFLATVHVDQN 640 (910)
T ss_pred EchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEe-cCCcceeeEECCCCCEEEEEEecCc
Confidence 999999999999999999999999999999999999999999999999999886 67889999999999999999988 4
Q ss_pred cEEEEE
Q 004214 529 LVNLWH 534 (768)
Q Consensus 529 ~v~vw~ 534 (768)
-|++|-
T Consensus 641 gIylWs 646 (910)
T KOG1539|consen 641 GIYLWS 646 (910)
T ss_pred eEEEEE
Confidence 589996
No 14
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.2e-45 Score=346.91 Aligned_cols=287 Identities=28% Similarity=0.416 Sum_probs=268.8
Q ss_pred eecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecC-CCEEEEEEeCCCeEEEE
Q 004214 234 RLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSS-GKILIVTGSKDNSVRLW 312 (768)
Q Consensus 234 ~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~-~~~~l~~~~~dg~i~iw 312 (768)
...|...++..+.|+ .++..+++|+-+|.+++|+..+...+.++.+|...+.++. |.|. ...-+++|+.||++++|
T Consensus 170 SQ~gd~rPis~~~fS-~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~--fhP~~~~~~lat~s~Dgtvklw 246 (459)
T KOG0272|consen 170 SQVGDTRPISGCSFS-RDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAV--FHPVDSDLNLATASADGTVKLW 246 (459)
T ss_pred hhccCCCcceeeEee-cCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEE--EccCCCccceeeeccCCceeee
Confidence 334556677777776 5889999999999999999999999999999999999998 6676 34459999999999999
Q ss_pred eCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCC
Q 004214 313 DSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND 392 (768)
Q Consensus 313 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 392 (768)
++.+..++..+.+|...|..++|+|+|+ +|.+++.|.+-++||+... .......+|...|.+++|.|||
T Consensus 247 ~~~~e~~l~~l~gH~~RVs~VafHPsG~-~L~TasfD~tWRlWD~~tk----------~ElL~QEGHs~~v~~iaf~~DG 315 (459)
T KOG0272|consen 247 KLSQETPLQDLEGHLARVSRVAFHPSGK-FLGTASFDSTWRLWDLETK----------SELLLQEGHSKGVFSIAFQPDG 315 (459)
T ss_pred ccCCCcchhhhhcchhhheeeeecCCCc-eeeecccccchhhcccccc----------hhhHhhcccccccceeEecCCC
Confidence 9999999999999999999999999987 8999999999999999854 3455568899999999999999
Q ss_pred CEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEE
Q 004214 393 SLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASF 472 (768)
Q Consensus 393 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 472 (768)
.++++|+.|..-+|||++++.++..+.+|..+|.+|+|+|+|..||||+.|++++|||++..+++.++.+|.+-|+.++|
T Consensus 316 SL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~ 395 (459)
T KOG0272|consen 316 SLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKY 395 (459)
T ss_pred ceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Ee-CCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004214 473 LT-RGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 534 (768)
Q Consensus 473 s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~ 534 (768)
+| .|.+|+|++.|++++||...++.+++++.+|.+.|.+++++|+++++++++.|.++++|.
T Consensus 396 ~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 396 SPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 98 788999999999999999999999999999999999999999999999999999999996
No 15
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.6e-43 Score=330.19 Aligned_cols=284 Identities=31% Similarity=0.430 Sum_probs=260.2
Q ss_pred EcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCC--CCEEEEEeCCCeEEEEECC
Q 004214 27 KGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSD--GSTLISAGRDKVVNLWDLR 104 (768)
Q Consensus 27 ~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d--~~~L~s~~~dg~i~vWd~~ 104 (768)
.|-+.+|..+.||+|++. ||||+.+|.++||+..+...+.+|.+|.+.|.++.|+|. +..|+||+.||++++|++.
T Consensus 172 ~gd~rPis~~~fS~ds~~--laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~ 249 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSKH--LATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLS 249 (459)
T ss_pred ccCCCcceeeEeecCCCe--EEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccC
Confidence 467889999999999988 999999999999999999999999999999999999997 5689999999999998875
Q ss_pred CCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeecc
Q 004214 105 DYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISF 184 (768)
Q Consensus 105 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~ 184 (768)
+-.+
T Consensus 250 ~e~~---------------------------------------------------------------------------- 253 (459)
T KOG0272|consen 250 QETP---------------------------------------------------------------------------- 253 (459)
T ss_pred CCcc----------------------------------------------------------------------------
Confidence 4221
Q ss_pred cccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcE
Q 004214 185 EMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQV 264 (768)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i 264 (768)
T Consensus 254 -------------------------------------------------------------------------------- 253 (459)
T KOG0272|consen 254 -------------------------------------------------------------------------------- 253 (459)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEE
Q 004214 265 QVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLV 344 (768)
Q Consensus 265 ~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 344 (768)
+..+.+|...|..++ |.|+|.. |+|++.|.+-++||+.++..+....||...|.+++|.|+|. +++
T Consensus 254 ----------l~~l~gH~~RVs~Va--fHPsG~~-L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGS-L~~ 319 (459)
T KOG0272|consen 254 ----------LQDLEGHLARVSRVA--FHPSGKF-LGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGS-LAA 319 (459)
T ss_pred ----------hhhhhcchhhheeee--ecCCCce-eeecccccchhhcccccchhhHhhcccccccceeEecCCCc-eee
Confidence 224455666666665 6677765 99999999999999999999999999999999999999987 899
Q ss_pred EEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCC
Q 004214 345 SGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRG 424 (768)
Q Consensus 345 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 424 (768)
+|+-|..-++||++++ .....+.+|.++|.+++|+|+|-.||+|+.|++++|||++....+.++.+|..-
T Consensus 320 tGGlD~~~RvWDlRtg----------r~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nl 389 (459)
T KOG0272|consen 320 TGGLDSLGRVWDLRTG----------RCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNL 389 (459)
T ss_pred ccCccchhheeecccC----------cEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccch
Confidence 9999999999999944 578888999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEcc-CCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEE
Q 004214 425 IWSVEFSP-VDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWT 492 (768)
Q Consensus 425 v~~v~~s~-~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd 492 (768)
|+.|.|+| .|.+|+|++.|++++||...++.+++++.||.+.|.++.+++++.++++++.|.++++|.
T Consensus 390 VS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 390 VSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred hhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 99999999 789999999999999999999999999999999999999999999999999999999995
No 16
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=3.5e-41 Score=301.85 Aligned_cols=294 Identities=26% Similarity=0.408 Sum_probs=263.3
Q ss_pred EEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 004214 23 THYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWD 102 (768)
Q Consensus 23 ~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd 102 (768)
.+.|+||.+.|.++.|++|+++ +++++.||.+.|||.-+...++.++-....|..++|+|.|+++|+||-|+...||+
T Consensus 48 rr~LkGH~~Ki~~~~ws~Dsr~--ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ 125 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDSRR--IVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYP 125 (343)
T ss_pred EEEecccccceeeeEecCCcCe--EEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEe
Confidence 4789999999999999999998 99999999999999999999999998999999999999999999999999999998
Q ss_pred CCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceee
Q 004214 103 LRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTI 182 (768)
Q Consensus 103 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~ 182 (768)
+.+....
T Consensus 126 ls~~d~~------------------------------------------------------------------------- 132 (343)
T KOG0286|consen 126 LSTRDAE------------------------------------------------------------------------- 132 (343)
T ss_pred ccccccc-------------------------------------------------------------------------
Confidence 7642100
Q ss_pred cccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCC
Q 004214 183 SFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIE 262 (768)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~ 262 (768)
|
T Consensus 133 -------------------------------------------------------------------------------g 133 (343)
T KOG0286|consen 133 -------------------------------------------------------------------------------G 133 (343)
T ss_pred -------------------------------------------------------------------------------c
Confidence 0
Q ss_pred cEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcE
Q 004214 263 QVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNF 342 (768)
Q Consensus 263 ~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 342 (768)
. -...+.+.+|.+.+.|.. |.. +.. |+|++.|.+..+||+++++.+..+.+|.+.|.++.++|...+.
T Consensus 134 ~--------~~v~r~l~gHtgylScC~--f~d-D~~-ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~nt 201 (343)
T KOG0286|consen 134 N--------VRVSRELAGHTGYLSCCR--FLD-DNH-ILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNT 201 (343)
T ss_pred c--------ceeeeeecCccceeEEEE--EcC-CCc-eEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCe
Confidence 0 011235678888888875 444 555 9999999999999999999999999999999999999955668
Q ss_pred EEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEec--
Q 004214 343 LVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG-- 420 (768)
Q Consensus 343 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-- 420 (768)
+++|+-|+..++||++.+ .....+.+|..+|+++.|.|+|.-+++|+.|+++++||++....+..+..
T Consensus 202 FvSg~cD~~aklWD~R~~----------~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~ 271 (343)
T KOG0286|consen 202 FVSGGCDKSAKLWDVRSG----------QCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDS 271 (343)
T ss_pred EEecccccceeeeeccCc----------ceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCc
Confidence 999999999999999944 47888999999999999999999999999999999999999988887763
Q ss_pred cCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEE
Q 004214 421 HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWT 492 (768)
Q Consensus 421 ~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd 492 (768)
-..+|++++||..|++|++|..|.++.+||.-.++.+..+.||.+.|+++..+|||.-+++|+.|.+++||.
T Consensus 272 ~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 272 IICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred ccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 235899999999999999999999999999999999999999999999999999999999999999999994
No 17
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=9.4e-40 Score=292.69 Aligned_cols=291 Identities=22% Similarity=0.366 Sum_probs=267.9
Q ss_pred eeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCC
Q 004214 228 ELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDN 307 (768)
Q Consensus 228 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg 307 (768)
.+...+.+.||...|.++.|.+ +.+++++++.||.+.|||.-+...+..++.....|...+ +.|.+.. ++.|+-|+
T Consensus 44 ~~~~rr~LkGH~~Ki~~~~ws~-Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA--~sPSg~~-VAcGGLdN 119 (343)
T KOG0286|consen 44 QMRTRRTLKGHLNKIYAMDWST-DSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCA--YSPSGNF-VACGGLDN 119 (343)
T ss_pred eeeeEEEecccccceeeeEecC-CcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEE--ECCCCCe-EEecCcCc
Confidence 4455688999999999999985 889999999999999999999999888888888888776 7777765 99999999
Q ss_pred eEEEEeCCCc------eEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCC
Q 004214 308 SVRLWDSESR------CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGK 381 (768)
Q Consensus 308 ~i~iwd~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (768)
...||++.+. ...+.+.+|++.+.++.|.+++ .|++++.|.+..+||++.+ .....+.+|..
T Consensus 120 ~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~--~ilT~SGD~TCalWDie~g----------~~~~~f~GH~g 187 (343)
T KOG0286|consen 120 KCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN--HILTGSGDMTCALWDIETG----------QQTQVFHGHTG 187 (343)
T ss_pred eeEEEecccccccccceeeeeecCccceeEEEEEcCCC--ceEecCCCceEEEEEcccc----------eEEEEecCCcc
Confidence 9999999865 4556788999999999999975 4999999999999999844 46778889999
Q ss_pred CeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEe
Q 004214 382 DINSLAVAP-NDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTF 460 (768)
Q Consensus 382 ~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~ 460 (768)
+|.+++++| +++.+++|+.|+..++||++.+...++|.+|...|+++.|.|+|.-+++|+.|++.++||++..+.+..+
T Consensus 188 DV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~y 267 (343)
T KOG0286|consen 188 DVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVY 267 (343)
T ss_pred cEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeee
Confidence 999999999 9999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred ec--CCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004214 461 EG--HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 534 (768)
Q Consensus 461 ~~--~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~ 534 (768)
.. -..+|++++||..|++|++|..|.++.+||.-.++.+..+.+|.++|.++..+|||..++||+-|..++||.
T Consensus 268 s~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 268 SHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred ccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 73 346899999999999999999999999999999999999999999999999999999999999999999994
No 18
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.8e-39 Score=289.20 Aligned_cols=291 Identities=25% Similarity=0.379 Sum_probs=256.5
Q ss_pred eEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCC-----ceeeeeeeCCccceEEEeeeeecCCCEEEEEE
Q 004214 229 LILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSS-----MSCSYVLAGHSEIVLCLDTCALSSGKILIVTG 303 (768)
Q Consensus 229 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~-----~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~ 303 (768)
+.....+.+|++.|..++..+.+.+.++.++.|..+.+|++.. |..++.+.||...|..+. ..+++.. .+++
T Consensus 5 l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~--~s~dg~~-alS~ 81 (315)
T KOG0279|consen 5 LVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVV--LSSDGNF-ALSA 81 (315)
T ss_pred heeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceE--EccCCce-EEec
Confidence 4456678899999999999998899999999999999998754 667889999999999986 6666665 9999
Q ss_pred eCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeec--cCC
Q 004214 304 SKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAA--HGK 381 (768)
Q Consensus 304 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~ 381 (768)
+.|+++++||+.+++..+.+.+|...|.+++|+++.. .+++|+.|.+|++|++-.. ...+... +..
T Consensus 82 swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~-qivSGSrDkTiklwnt~g~-----------ck~t~~~~~~~~ 149 (315)
T KOG0279|consen 82 SWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNR-QIVSGSRDKTIKLWNTLGV-----------CKYTIHEDSHRE 149 (315)
T ss_pred cccceEEEEEecCCcEEEEEEecCCceEEEEecCCCc-eeecCCCcceeeeeeeccc-----------EEEEEecCCCcC
Confidence 9999999999999999999999999999999999965 7999999999999998643 2222222 367
Q ss_pred CeEEEEEccC--CCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEE
Q 004214 382 DINSLAVAPN--DSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKT 459 (768)
Q Consensus 382 ~i~~~~~s~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~ 459 (768)
-|+|+.|+|+ ..+|++++.|++|++||+++.+....+.+|.+.++.+++||||.++++|+.||.+.+||++.++++..
T Consensus 150 WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lys 229 (315)
T KOG0279|consen 150 WVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYS 229 (315)
T ss_pred cEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEe
Confidence 8999999997 78999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred eecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEecc----C-----CCcEEEEEEcCCCCEEEEEeCCCcE
Q 004214 460 FEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDK----H-----EDKIWALAVGKKTEMFATGGSDALV 530 (768)
Q Consensus 460 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----~-----~~~v~~l~~s~~~~~l~s~~~dg~v 530 (768)
+. |...|.+++|+|+.-+|+.+.. ..|+|||+.++.++..+.. . .....+++|++||..|++|-.|+.|
T Consensus 230 l~-a~~~v~sl~fspnrywL~~at~-~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~i 307 (315)
T KOG0279|consen 230 LE-AFDIVNSLCFSPNRYWLCAATA-TSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVI 307 (315)
T ss_pred cc-CCCeEeeEEecCCceeEeeccC-CceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcE
Confidence 87 8899999999999877766554 4599999999988877642 1 2235678999999999999999999
Q ss_pred EEEEcC
Q 004214 531 NLWHDS 536 (768)
Q Consensus 531 ~vw~~~ 536 (768)
++|.+.
T Consensus 308 rv~qv~ 313 (315)
T KOG0279|consen 308 RVWQVA 313 (315)
T ss_pred EEEEee
Confidence 999864
No 19
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=5.2e-39 Score=286.27 Aligned_cols=292 Identities=26% Similarity=0.462 Sum_probs=249.4
Q ss_pred EEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECC-----CCeeEEEecCccceeEEEEEcCCCCEEEEEeCC
Q 004214 21 FCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLL-----AKKCVATLDKHFSRVTSMAITSDGSTLISAGRD 95 (768)
Q Consensus 21 ~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~-----~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~d 95 (768)
....+++||++.|+.++..+. ...++.+++.|.++.+|++. .|.+++.|+||...|..+..++||++.++++.|
T Consensus 6 ~l~~tl~gh~d~Vt~la~~~~-~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD 84 (315)
T KOG0279|consen 6 VLRGTLEGHTDWVTALAIKIK-NSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWD 84 (315)
T ss_pred eeeeeecCCCceEEEEEeecC-CCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEecccc
Confidence 345688999999999999997 45679999999999999874 467899999999999999999999999999999
Q ss_pred CeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeee
Q 004214 96 KVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQ 175 (768)
Q Consensus 96 g~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~ 175 (768)
+++++||+.+++
T Consensus 85 ~~lrlWDl~~g~-------------------------------------------------------------------- 96 (315)
T KOG0279|consen 85 GTLRLWDLATGE-------------------------------------------------------------------- 96 (315)
T ss_pred ceEEEEEecCCc--------------------------------------------------------------------
Confidence 999999987653
Q ss_pred cCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEE
Q 004214 176 KSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYL 255 (768)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 255 (768)
T Consensus 97 -------------------------------------------------------------------------------- 96 (315)
T KOG0279|consen 97 -------------------------------------------------------------------------------- 96 (315)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecc-cCcEEEEE
Q 004214 256 AVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGH-MGAVGAVA 334 (768)
Q Consensus 256 ~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~ 334 (768)
..+.+.+|...|.+++ +++++.. +++|+.|.+|.+|+............. .+.|.|+.
T Consensus 97 ------------------~t~~f~GH~~dVlsva--~s~dn~q-ivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvr 155 (315)
T KOG0279|consen 97 ------------------STRRFVGHTKDVLSVA--FSTDNRQ-IVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVR 155 (315)
T ss_pred ------------------EEEEEEecCCceEEEE--ecCCCce-eecCCCcceeeeeeecccEEEEEecCCCcCcEEEEE
Confidence 1225667888888887 6676666 999999999999999877665554443 88999999
Q ss_pred EecCC-CcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCc
Q 004214 335 FSKKL-QNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLV 413 (768)
Q Consensus 335 ~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~ 413 (768)
|+|+. ..+++++++|++|++||++ ..+....+.+|...++.+++||||.+.++|+.||.+.+||++.++
T Consensus 156 fsP~~~~p~Ivs~s~DktvKvWnl~----------~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k 225 (315)
T KOG0279|consen 156 FSPNESNPIIVSASWDKTVKVWNLR----------NCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGK 225 (315)
T ss_pred EcCCCCCcEEEEccCCceEEEEccC----------CcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCc
Confidence 99985 4589999999999999998 445667778899999999999999999999999999999999999
Q ss_pred eEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEee----cC-----CCcEEEEEEEeCCCEEEEEeC
Q 004214 414 SVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFE----GH-----TSSVLRASFLTRGAQIVSCGA 484 (768)
Q Consensus 414 ~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~----~~-----~~~v~~~~~s~~~~~l~s~~~ 484 (768)
.+..+. |...|.+++|+|+.-.|+.+ .+..|+|||+.++.++..+. +. .....+++|++||..|++|..
T Consensus 226 ~lysl~-a~~~v~sl~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~t 303 (315)
T KOG0279|consen 226 NLYSLE-AFDIVNSLCFSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYT 303 (315)
T ss_pred eeEecc-CCCeEeeEEecCCceeEeec-cCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeec
Confidence 988776 88999999999977666555 45679999999998887665 22 334578899999999999999
Q ss_pred CCcEEEEECC
Q 004214 485 DGLVKLWTVR 494 (768)
Q Consensus 485 dg~i~iwd~~ 494 (768)
|+.|++|.+.
T Consensus 304 d~~irv~qv~ 313 (315)
T KOG0279|consen 304 DNVIRVWQVA 313 (315)
T ss_pred CCcEEEEEee
Confidence 9999999875
No 20
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=6.3e-39 Score=280.62 Aligned_cols=294 Identities=28% Similarity=0.480 Sum_probs=251.7
Q ss_pred CccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEE
Q 004214 43 DKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVC 122 (768)
Q Consensus 43 ~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~ 122 (768)
...+|+|++.|.+|++|...+|.|.++++...+.|..+.++||++.||+++. ..|++||+.++..
T Consensus 9 ~~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np-------------- 73 (311)
T KOG0315|consen 9 DPVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNP-------------- 73 (311)
T ss_pred CceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCC--------------
Confidence 3457999999999999999999999999988889999999999999999886 4588888765420
Q ss_pred ecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCC
Q 004214 123 AIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSN 202 (768)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (768)
T Consensus 74 -------------------------------------------------------------------------------- 73 (311)
T KOG0315|consen 74 -------------------------------------------------------------------------------- 73 (311)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCc
Q 004214 203 QGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHS 282 (768)
Q Consensus 203 ~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~ 282 (768)
.++..+.+|+
T Consensus 74 ----------------------------------------------------------------------~Pv~t~e~h~ 83 (311)
T KOG0315|consen 74 ----------------------------------------------------------------------NPVATFEGHT 83 (311)
T ss_pred ----------------------------------------------------------------------CceeEEeccC
Confidence 1223566777
Q ss_pred cceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCC
Q 004214 283 EIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSD 362 (768)
Q Consensus 283 ~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 362 (768)
..|+.+. |..+++. +++|+.||+++|||++...+.+.+. |..+|+++..+|+.. -|++|..+|.|++||+.....
T Consensus 84 kNVtaVg--F~~dgrW-MyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQt-eLis~dqsg~irvWDl~~~~c 158 (311)
T KOG0315|consen 84 KNVTAVG--FQCDGRW-MYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQT-ELISGDQSGNIRVWDLGENSC 158 (311)
T ss_pred CceEEEE--EeecCeE-EEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcc-eEEeecCCCcEEEEEccCCcc
Confidence 8888886 6666666 9999999999999999977666665 669999999999844 699999999999999985422
Q ss_pred CCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC------ceEEEEeccCCCeEEEEEccCCCE
Q 004214 363 DAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDL------VSVVTFRGHKRGIWSVEFSPVDQV 436 (768)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~------~~~~~~~~~~~~v~~v~~s~~~~~ 436 (768)
. ..........|.++++.|||.+++.+...|++++|++-+. +++..++.|.+.+..+.+||++++
T Consensus 159 ~---------~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~ 229 (311)
T KOG0315|consen 159 T---------HELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKY 229 (311)
T ss_pred c---------cccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcE
Confidence 1 1112233467999999999999999999999999998653 566778899999999999999999
Q ss_pred EEEeeCCCcEEEEeCCCC-ceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEc
Q 004214 437 VITASGDKTIKIWSISDG-SCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVG 515 (768)
Q Consensus 437 l~t~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s 515 (768)
||+++.|.+++||+.++. +....+.+|...+..++||.||.||++|+.|+.+++|++..++.+..+.+|.....|++..
T Consensus 230 lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 230 LATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred EEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 999999999999999887 6778889999999999999999999999999999999999999999999999888887753
No 21
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=4.5e-39 Score=306.59 Aligned_cols=244 Identities=23% Similarity=0.393 Sum_probs=222.9
Q ss_pred eeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEe
Q 004214 277 VLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS 356 (768)
Q Consensus 277 ~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd 356 (768)
++..|.++|.++. +...|.+ |++++.||++.+||..++.....+..|..+-..+.|-.+. -+++++.|+.|+++.
T Consensus 271 tl~~HkgPI~slK--Wnk~G~y-ilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~--~F~ts~td~~i~V~k 345 (524)
T KOG0273|consen 271 TLGQHKGPIFSLK--WNKKGTY-ILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSND--EFATSSTDGCIHVCK 345 (524)
T ss_pred hhhccCCceEEEE--EcCCCCE-EEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCc--eEeecCCCceEEEEE
Confidence 5566888888886 5566665 9999999999999999999999999999987788887764 489999999999999
Q ss_pred CCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCC--
Q 004214 357 FDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVD-- 434 (768)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~-- 434 (768)
+.. ..+..++.+|.+.|.++.|+|.|.+|++++.|++++||+.........+.+|...|..+.|+|.|
T Consensus 346 v~~----------~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v 415 (524)
T KOG0273|consen 346 VGE----------DRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPV 415 (524)
T ss_pred ecC----------CCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCc
Confidence 873 34677788899999999999999999999999999999999999999999999999999999975
Q ss_pred -------CEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCC
Q 004214 435 -------QVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHED 507 (768)
Q Consensus 435 -------~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 507 (768)
..+++++.|++|++||+..+.++.+|..|..+|.+++|+|+|+|+++|+.||.|.+|++++++.++.+. -.+
T Consensus 416 ~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~-~~~ 494 (524)
T KOG0273|consen 416 TSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQ-GTG 494 (524)
T ss_pred cCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeec-CCC
Confidence 478999999999999999999999999999999999999999999999999999999999999999997 566
Q ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 004214 508 KIWALAVGKKTEMFATGGSDALVNLWHDS 536 (768)
Q Consensus 508 ~v~~l~~s~~~~~l~s~~~dg~v~vw~~~ 536 (768)
.|..++|+.+|..|.++-.||.+++-++.
T Consensus 495 ~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 495 GIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred eEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 79999999999999999999999998764
No 22
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.2e-38 Score=278.88 Aligned_cols=295 Identities=22% Similarity=0.450 Sum_probs=249.1
Q ss_pred CEEEeecCCCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCe--eEEEecCccceeE
Q 004214 1 MFALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK--CVATLDKHFSRVT 78 (768)
Q Consensus 1 ~~latg~~dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~--~~~~l~~h~~~V~ 78 (768)
++||++|-|.+|++|...+|.|.++++...+.|..+.+.||++. ||+++.. .|++||+.++. ++.++.+|...|+
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~--LAaa~~q-hvRlyD~~S~np~Pv~t~e~h~kNVt 87 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKD--LAAAGNQ-HVRLYDLNSNNPNPVATFEGHTKNVT 87 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcch--hhhccCC-eeEEEEccCCCCCceeEEeccCCceE
Confidence 47999999999999999999999999988899999999999887 8887754 59999998775 5899999999999
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeC
Q 004214 79 SMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGE 158 (768)
Q Consensus 79 ~l~fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (768)
++.|..+|++++|+|.||+++|||++...+.+.+
T Consensus 88 aVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~---------------------------------------------- 121 (311)
T KOG0315|consen 88 AVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNY---------------------------------------------- 121 (311)
T ss_pred EEEEeecCeEEEecCCCceEEEEeccCcccchhc----------------------------------------------
Confidence 9999999999999999999999999763221111
Q ss_pred CcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeeccc
Q 004214 159 RGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGY 238 (768)
Q Consensus 159 ~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~ 238 (768)
T Consensus 122 -------------------------------------------------------------------------------- 121 (311)
T KOG0315|consen 122 -------------------------------------------------------------------------------- 121 (311)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCce
Q 004214 239 NEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC 318 (768)
Q Consensus 239 ~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 318 (768)
.|..+|.++. ..|.... |++|..+|.|++||+....
T Consensus 122 -----------------------------------------~~~spVn~vv--lhpnQte-Lis~dqsg~irvWDl~~~~ 157 (311)
T KOG0315|consen 122 -----------------------------------------QHNSPVNTVV--LHPNQTE-LISGDQSGNIRVWDLGENS 157 (311)
T ss_pred -----------------------------------------cCCCCcceEE--ecCCcce-EEeecCCCcEEEEEccCCc
Confidence 1234444543 3343344 7888888888888888775
Q ss_pred EEEeee-cccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEE
Q 004214 319 CVGVGT-GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCT 397 (768)
Q Consensus 319 ~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 397 (768)
+...+- ....+|.++...|+|+ +++.+...|...+|++..... .....+...+..|...+..+.+||++++||+
T Consensus 158 c~~~liPe~~~~i~sl~v~~dgs-ml~a~nnkG~cyvW~l~~~~~----~s~l~P~~k~~ah~~~il~C~lSPd~k~lat 232 (311)
T KOG0315|consen 158 CTHELIPEDDTSIQSLTVMPDGS-MLAAANNKGNCYVWRLLNHQT----ASELEPVHKFQAHNGHILRCLLSPDVKYLAT 232 (311)
T ss_pred cccccCCCCCcceeeEEEcCCCc-EEEEecCCccEEEEEccCCCc----cccceEhhheecccceEEEEEECCCCcEEEe
Confidence 555433 3456799999999987 789999999999999986432 2245566678999999999999999999999
Q ss_pred EeCCCcEEEEeCCCC-ceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEE
Q 004214 398 GSQDRTACVWRLPDL-VSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFL 473 (768)
Q Consensus 398 ~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s 473 (768)
++.|.+++||+.++. +....+.+|...++.++||.+|++|+||+.|+.+++|++..++.++.+.+|.....+++..
T Consensus 233 ~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 233 CSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred ecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 999999999999988 6677889999999999999999999999999999999999999999999999988888764
No 23
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=2.1e-38 Score=292.77 Aligned_cols=331 Identities=21% Similarity=0.311 Sum_probs=280.3
Q ss_pred EEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEE
Q 004214 22 CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLW 101 (768)
Q Consensus 22 ~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vW 101 (768)
.++.|..|++.|.+++.+|+.+ +++||+.|..-.+|++.++.....+.+|+..|+++.||.||.+||||+-+|.|+||
T Consensus 56 S~~tF~~H~~svFavsl~P~~~--l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~ 133 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNNN--LVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVF 133 (399)
T ss_pred ceeehhhcCCceEEEEeCCCCc--eEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEE
Confidence 3678999999999999999544 59999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCcee
Q 004214 102 DLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVT 181 (768)
Q Consensus 102 d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~ 181 (768)
+..++.....+.
T Consensus 134 ~~stg~~~~~~~-------------------------------------------------------------------- 145 (399)
T KOG0296|consen 134 KVSTGGEQWKLD-------------------------------------------------------------------- 145 (399)
T ss_pred EcccCceEEEee--------------------------------------------------------------------
Confidence 988764322210
Q ss_pred ecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCC
Q 004214 182 ISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNI 261 (768)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~ 261 (768)
.++..
T Consensus 146 ----------------------------------------------------------~e~~d----------------- 150 (399)
T KOG0296|consen 146 ----------------------------------------------------------QEVED----------------- 150 (399)
T ss_pred ----------------------------------------------------------cccCc-----------------
Confidence 01111
Q ss_pred CcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCc
Q 004214 262 EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQN 341 (768)
Q Consensus 262 ~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 341 (768)
+.|..+++...+|++|+.||.+.+|.+.++.....+.+|..++++=.|.|+|+
T Consensus 151 --------------------------ieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGK- 203 (399)
T KOG0296|consen 151 --------------------------IEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGK- 203 (399)
T ss_pred --------------------------eEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCc-
Confidence 11223333444599999999999999999888999999999999999999987
Q ss_pred EEEEEeCCCeEEEEeCCCCCCCCccccccceeeEe-eccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEe-
Q 004214 342 FLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVV-AAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFR- 419 (768)
Q Consensus 342 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~- 419 (768)
.++++..||+|++|+..++.. .... ........++.++..+..++.|..++.+++-+..+++.+....
T Consensus 204 r~~tgy~dgti~~Wn~ktg~p----------~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~ 273 (399)
T KOG0296|consen 204 RILTGYDDGTIIVWNPKTGQP----------LHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNG 273 (399)
T ss_pred eEEEEecCceEEEEecCCCce----------eEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCC
Confidence 699999999999999986532 1111 1223456788999999999999999999999999998888777
Q ss_pred -------ccCCCeEEEEEcc---CCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEE
Q 004214 420 -------GHKRGIWSVEFSP---VDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVK 489 (768)
Q Consensus 420 -------~~~~~v~~v~~s~---~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~ 489 (768)
.+...+.|+.+.| .-.+.|+|+-||+|.|||+...++.+.+. |..+|+++.|.+ ..+|++++.+|.|+
T Consensus 274 ~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~-t~~l~t~c~~g~v~ 351 (399)
T KOG0296|consen 274 TVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLN-TDYLLTACANGKVR 351 (399)
T ss_pred CCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheecc-CCCceEEEEEcC-cchheeeccCceEE
Confidence 3444555555554 55788999999999999998888777777 999999999998 78999999999999
Q ss_pred EEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 004214 490 LWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDS 536 (768)
Q Consensus 490 iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~ 536 (768)
.||.++|+++.++.+|..+|.+++++|+.++++|+|.|+..+||+..
T Consensus 352 ~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 352 QWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred eeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 99999999999999999999999999999999999999999999864
No 24
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.7e-37 Score=295.92 Aligned_cols=308 Identities=25% Similarity=0.423 Sum_probs=263.5
Q ss_pred EEEeecCCCcEEEEECCC--CE--EEEEEE------c----CCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeE
Q 004214 2 FALLEGADRKVLVWDVDG--GF--CTHYFK------G----HKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCV 67 (768)
Q Consensus 2 ~latg~~dg~i~vwd~~~--~~--~~~~l~------g----h~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~ 67 (768)
++|+|+.|-..++|++.. .. .+..|+ + -...|++++|+.+|.. ||+|+.||.++||+. +|.++
T Consensus 193 llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~--LatG~~~G~~riw~~-~G~l~ 269 (524)
T KOG0273|consen 193 LLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTL--LATGSEDGEARIWNK-DGNLI 269 (524)
T ss_pred hhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCe--EEEeecCcEEEEEec-Cchhh
Confidence 578899999999999964 11 111121 2 2468999999999988 999999999999996 88889
Q ss_pred EEecCccceeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccC
Q 004214 68 ATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRR 147 (768)
Q Consensus 68 ~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (768)
.+|..|+++|.++.|+.+|.||++++.|+++.+||..++.....++.+
T Consensus 270 ~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~-------------------------------- 317 (524)
T KOG0273|consen 270 STLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFH-------------------------------- 317 (524)
T ss_pred hhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeec--------------------------------
Confidence 999999999999999999999999999999999999877654443321
Q ss_pred CcceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccce
Q 004214 148 SLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKM 227 (768)
Q Consensus 148 ~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~ 227 (768)
T Consensus 318 -------------------------------------------------------------------------------- 317 (524)
T KOG0273|consen 318 -------------------------------------------------------------------------------- 317 (524)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCC
Q 004214 228 ELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDN 307 (768)
Q Consensus 228 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg 307 (768)
..+...+. |.. +.. +++.+.||
T Consensus 318 ------------------------------------------------------s~~~lDVd--W~~-~~~-F~ts~td~ 339 (524)
T KOG0273|consen 318 ------------------------------------------------------SAPALDVD--WQS-NDE-FATSSTDG 339 (524)
T ss_pred ------------------------------------------------------cCCccceE--Eec-Cce-EeecCCCc
Confidence 11111121 222 223 89999999
Q ss_pred eEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEE
Q 004214 308 SVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLA 387 (768)
Q Consensus 308 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 387 (768)
.|+++.+....++.++.+|.++|.++.|+|.+. +|++++.|+++++|++... .....+.+|...|..+.
T Consensus 340 ~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~-LLaS~SdD~TlkiWs~~~~----------~~~~~l~~Hskei~t~~ 408 (524)
T KOG0273|consen 340 CIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGS-LLASCSDDGTLKIWSMGQS----------NSVHDLQAHSKEIYTIK 408 (524)
T ss_pred eEEEEEecCCCcceeeecccCceEEEEECCCCc-eEEEecCCCeeEeeecCCC----------cchhhhhhhccceeeEe
Confidence 999999999999999999999999999999977 8999999999999998733 35556688999999999
Q ss_pred EccCC---------CEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeE
Q 004214 388 VAPND---------SLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLK 458 (768)
Q Consensus 388 ~s~~~---------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~ 458 (768)
|+|.| ..+++++.|++|++||+..+.++.+|..|..+|.+++|+|+|+++|+|+.||.|.||+.++++..+
T Consensus 409 wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~ 488 (524)
T KOG0273|consen 409 WSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVK 488 (524)
T ss_pred ecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeE
Confidence 99954 479999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECC
Q 004214 459 TFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVR 494 (768)
Q Consensus 459 ~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 494 (768)
.+.+ .+.|..++|+.+|.+|..+..||.+++.|++
T Consensus 489 s~~~-~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 489 SYQG-TGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred eecC-CCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 9984 5669999999999999999999999999875
No 25
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.3e-38 Score=291.25 Aligned_cols=290 Identities=28% Similarity=0.474 Sum_probs=268.8
Q ss_pred EEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEE
Q 004214 231 LSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVR 310 (768)
Q Consensus 231 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~ 310 (768)
....+.++..+|+.+.|. |+...+++++.+++|++||..++++...+++|.+.+..+. +...|.. +++++.|-.+.
T Consensus 100 l~~~l~g~r~~vt~v~~h-p~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~--~~a~Gk~-l~tcSsDl~~~ 175 (406)
T KOG0295|consen 100 LVQKLAGHRSSVTRVIFH-PSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDIS--FDASGKY-LATCSSDLSAK 175 (406)
T ss_pred chhhhhccccceeeeeec-cCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEE--EecCccE-EEecCCccchh
Confidence 445677888899999986 5788999999999999999999999999999999999997 6666765 99999999999
Q ss_pred EEeCCC-ceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEc
Q 004214 311 LWDSES-RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVA 389 (768)
Q Consensus 311 iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 389 (768)
+||..+ .+++....+|...|.+++|-|.|. ++++++.|.+|+.|++..+ ....++.+|..-|..++.+
T Consensus 176 LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd-~ilS~srD~tik~We~~tg----------~cv~t~~~h~ewvr~v~v~ 244 (406)
T KOG0295|consen 176 LWDFDTFFRCIKSLIGHEHGVSSVFFLPLGD-HILSCSRDNTIKAWECDTG----------YCVKTFPGHSEWVRMVRVN 244 (406)
T ss_pred heeHHHHHHHHHHhcCcccceeeEEEEecCC-eeeecccccceeEEecccc----------eeEEeccCchHhEEEEEec
Confidence 999987 667778889999999999999975 8999999999999999844 4778888999999999999
Q ss_pred cCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccC---------------CCEEEEeeCCCcEEEEeCCCC
Q 004214 390 PNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPV---------------DQVVITASGDKTIKIWSISDG 454 (768)
Q Consensus 390 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~---------------~~~l~t~~~d~~i~iwd~~~~ 454 (768)
.||.++|+++.|.++++|-+.++.+...++.|..+|.|++|.|. ++++.+++.|++|++||+.+|
T Consensus 245 ~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg 324 (406)
T KOG0295|consen 245 QDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG 324 (406)
T ss_pred CCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC
Confidence 99999999999999999999999999999999999999999873 259999999999999999999
Q ss_pred ceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004214 455 SCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 534 (768)
Q Consensus 455 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~ 534 (768)
.|+.++.+|...|..++|+|.|+||+++.+|+++++||+++++|..++..|+.-|++++|+.+..+++||+-|..+++|.
T Consensus 325 ~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 325 MCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred eEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred c
Q 004214 535 D 535 (768)
Q Consensus 535 ~ 535 (768)
.
T Consensus 405 c 405 (406)
T KOG0295|consen 405 C 405 (406)
T ss_pred c
Confidence 4
No 26
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.2e-38 Score=289.46 Aligned_cols=291 Identities=28% Similarity=0.538 Sum_probs=261.5
Q ss_pred EEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEE
Q 004214 22 CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLW 101 (768)
Q Consensus 22 ~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vW 101 (768)
..+.+.||..+|+.+-|+|+ ..++++++.|++|++||..+|++...|+||...|..++|+..|++|++++.|-.+++|
T Consensus 100 l~~~l~g~r~~vt~v~~hp~--~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LW 177 (406)
T KOG0295|consen 100 LVQKLAGHRSSVTRVIFHPS--EALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLW 177 (406)
T ss_pred chhhhhccccceeeeeeccC--ceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhhe
Confidence 46778899999999999995 4559999999999999999999999999999999999999999999999999888899
Q ss_pred ECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCcee
Q 004214 102 DLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVT 181 (768)
Q Consensus 102 d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~ 181 (768)
|..+.
T Consensus 178 d~~~~--------------------------------------------------------------------------- 182 (406)
T KOG0295|consen 178 DFDTF--------------------------------------------------------------------------- 182 (406)
T ss_pred eHHHH---------------------------------------------------------------------------
Confidence 87541
Q ss_pred ecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCC
Q 004214 182 ISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNI 261 (768)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~ 261 (768)
T Consensus 183 -------------------------------------------------------------------------------- 182 (406)
T KOG0295|consen 183 -------------------------------------------------------------------------------- 182 (406)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCc
Q 004214 262 EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQN 341 (768)
Q Consensus 262 ~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 341 (768)
.++++.+.+|...|.++. +.|.+.. +++++.|.+|+.|++.++-++.++.+|..-|..+..+.||.
T Consensus 183 ----------~~c~ks~~gh~h~vS~V~--f~P~gd~-ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGt- 248 (406)
T KOG0295|consen 183 ----------FRCIKSLIGHEHGVSSVF--FLPLGDH-ILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGT- 248 (406)
T ss_pred ----------HHHHHHhcCcccceeeEE--EEecCCe-eeecccccceeEEecccceeEEeccCchHhEEEEEecCCee-
Confidence 112234556777777776 6777765 99999999999999999999999999999999999999976
Q ss_pred EEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccC---------------CCEEEEEeCCCcEEE
Q 004214 342 FLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN---------------DSLVCTGSQDRTACV 406 (768)
Q Consensus 342 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~---------------~~~l~~~~~dg~i~i 406 (768)
++++++.|.++++|-+... .....+..|..+|.+++|.|. +.++++++.|++|++
T Consensus 249 i~As~s~dqtl~vW~~~t~----------~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~ 318 (406)
T KOG0295|consen 249 IIASCSNDQTLRVWVVATK----------QCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKI 318 (406)
T ss_pred EEEecCCCceEEEEEeccc----------hhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEE
Confidence 8999999999999988743 355667789999999998762 258999999999999
Q ss_pred EeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCC
Q 004214 407 WRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADG 486 (768)
Q Consensus 407 ~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 486 (768)
||+.++.++.++.+|...|..++|+|.|++|+++..|+++++||+++++|++++..|...++++.|..+..++++|+-|.
T Consensus 319 wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdq 398 (406)
T KOG0295|consen 319 WDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQ 398 (406)
T ss_pred EeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEC
Q 004214 487 LVKLWTV 493 (768)
Q Consensus 487 ~i~iwd~ 493 (768)
++++|.-
T Consensus 399 t~KvwEc 405 (406)
T KOG0295|consen 399 TVKVWEC 405 (406)
T ss_pred eeeeeec
Confidence 9999964
No 27
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2.1e-37 Score=314.94 Aligned_cols=247 Identities=30% Similarity=0.532 Sum_probs=220.5
Q ss_pred EEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEE
Q 004214 264 VQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFL 343 (768)
Q Consensus 264 i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 343 (768)
+.+.|..+....+.+.+|.++|.... ++|+.+. |++++.|+++|+|.+.+..++..+++|..||+.+.|+|.|- ++
T Consensus 433 ~~~~D~~~~~~~~~L~GH~GPVyg~s--FsPd~rf-LlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~Gy-YF 508 (707)
T KOG0263|consen 433 VDMLDDDSSGTSRTLYGHSGPVYGCS--FSPDRRF-LLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGY-YF 508 (707)
T ss_pred hhhccccCCceeEEeecCCCceeeee--ecccccc-eeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCce-EE
Confidence 44455556666667999999999997 7777665 99999999999999999999999999999999999999955 89
Q ss_pred EEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCC
Q 004214 344 VSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKR 423 (768)
Q Consensus 344 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 423 (768)
++++.|++-++|... ...+.+.+.+|-.+|.|+.|+|+..++++|+.|.+|++||+.+|..++.|.||.+
T Consensus 509 atas~D~tArLWs~d----------~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~ 578 (707)
T KOG0263|consen 509 ATASHDQTARLWSTD----------HNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKG 578 (707)
T ss_pred EecCCCceeeeeecc----------cCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCC
Confidence 999999999999987 4457888899999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCe------
Q 004214 424 GIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE------ 497 (768)
Q Consensus 424 ~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~------ 497 (768)
+|++++|||+|++|++|+.||.|.+||+.+++++..+.+|.+.|.++.|+.+|..|++|+.|.+|++||+..-.
T Consensus 579 ~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~ 658 (707)
T KOG0263|consen 579 PVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIELLNLG 658 (707)
T ss_pred ceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999985321
Q ss_pred ------------------EEEEeccCCCcEEEEEEcCCCCEEEEE
Q 004214 498 ------------------CIATYDKHEDKIWALAVGKKTEMFATG 524 (768)
Q Consensus 498 ------------------~~~~~~~~~~~v~~l~~s~~~~~l~s~ 524 (768)
++.++..-..+|.++.|..-.-.|++|
T Consensus 659 ~~~~~~~~~~~~~~~~~~llgs~~tK~tpv~~l~FtrrNl~L~~g 703 (707)
T KOG0263|consen 659 HISTSNSAITQENNASSLLLGSFYTKNTPVVGLHFTRRNLLLAVG 703 (707)
T ss_pred ccccccccccccCCCCcceeeeeeecCceEEEEEEeccceeEEec
Confidence 445555566778888887665444444
No 28
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=2e-35 Score=300.65 Aligned_cols=443 Identities=19% Similarity=0.312 Sum_probs=345.0
Q ss_pred EEeecCCCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEE
Q 004214 3 ALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAI 82 (768)
Q Consensus 3 latg~~dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~f 82 (768)
++.|+.+|.+.+||+.+++.+++++++...||++.-+|-=+ ++|.|..+|+|.|+|+..++.+.+|+...++|++++|
T Consensus 175 IvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLD--VVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSF 252 (910)
T KOG1539|consen 175 IVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALD--VVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSF 252 (910)
T ss_pred EEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcce--EEEEeccCceEEEEEcccCcEEEEEEccccceeEEEe
Confidence 67899999999999999999999999999999999999544 5999999999999999999999999955699999999
Q ss_pred cCCCCEE-EEEeCCCeEEEEECCCCeeeeeee--cceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCC
Q 004214 83 TSDGSTL-ISAGRDKVVNLWDLRDYSCKLTVP--TYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGER 159 (768)
Q Consensus 83 s~d~~~L-~s~~~dg~i~vWd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (768)
..||+.+ ++++..|.+.+||++..+.+.... +...+....|.|... .+++.+.|
T Consensus 253 rtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~ep-----------------------Vl~ta~~D 309 (910)
T KOG1539|consen 253 RTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEP-----------------------VLVTAGAD 309 (910)
T ss_pred ccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCc-----------------------eEeeccCC
Confidence 9999865 555666999999999988776654 234566666666554 78999999
Q ss_pred cEEEEEEcCCc----eeeeecCCceeecccccCcccceeEEEEc-cCCCceEEEEecCeEEEEeeccCcccc-eee----
Q 004214 160 GIVRMWNADSA----CLYEQKSSDVTISFEMDDSKRGFTAATVL-PSNQGLLCVTADQQLLLYTTVEVPEKK-MEL---- 229 (768)
Q Consensus 160 g~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~dg~i~~~~~~~~~~~~-~~~---- 229 (768)
..+++|-.+++ .+.+.+. .+.....++.|. ..+..++.+..|+.++.+++....... ...
T Consensus 310 nSlk~~vfD~~dg~pR~LR~R~----------GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~ 379 (910)
T KOG1539|consen 310 NSLKVWVFDSGDGVPRLLRSRG----------GHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNK 379 (910)
T ss_pred CceeEEEeeCCCCcchheeecc----------CCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccc
Confidence 99999877655 2222221 222344555555 556667888889988888765543211 000
Q ss_pred EEEe------eecccCCceeEEEEec----CCCCEEEEEeCCCcEEEEECCCceee-eeeeCCc----cceEEEeeeeec
Q 004214 230 ILSK------RLVGYNEEILDLKFLG----EEEQYLAVATNIEQVQVYDLSSMSCS-YVLAGHS----EIVLCLDTCALS 294 (768)
Q Consensus 230 ~~~~------~~~~~~~~i~~~~~~~----~~~~~l~~~~~~~~i~i~d~~~~~~~-~~~~~~~----~~v~~l~~~~~~ 294 (768)
...+ ...-.-.+|..+++.. .-.+.+++.-++...+.|+......- ..+. +. ..+.+.+.|..+
T Consensus 380 ~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~-~~~~~~~~~~~~av~vs~ 458 (910)
T KOG1539|consen 380 KRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLD-PKRFKKDDINATAVCVSF 458 (910)
T ss_pred cccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEec-CccccccCcceEEEEEec
Confidence 0000 1111234566666643 23467777778889999999876652 2232 22 333444444666
Q ss_pred CCCEEEEEEeCCCeEEEEeCCCceEEEee---ecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccc
Q 004214 295 SGKILIVTGSKDNSVRLWDSESRCCVGVG---TGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLK 371 (768)
Q Consensus 295 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 371 (768)
.|+. .+.|...|.|-+|++++|-....+ ..|.++|+.++...-++ .+++++.+|.+++||+....
T Consensus 459 CGNF-~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~-~~vsa~~~Gilkfw~f~~k~---------- 526 (910)
T KOG1539|consen 459 CGNF-VFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNR-LLVSAGADGILKFWDFKKKV---------- 526 (910)
T ss_pred cCce-EEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCc-eEEEccCcceEEEEecCCcc----------
Confidence 6665 889999999999999999888888 58999999999988755 79999999999999997432
Q ss_pred eeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeC
Q 004214 372 AKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSI 451 (768)
Q Consensus 372 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~ 451 (768)
. .....-...++++..+....+++.+..|-.|.++|..+.+.++.+.||...|++++|||||++|++++.|++|++||+
T Consensus 527 l-~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDl 605 (910)
T KOG1539|consen 527 L-KKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDL 605 (910)
T ss_pred e-eeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEec
Confidence 1 111223456788888888889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCC-CcEEEEECCC
Q 004214 452 SDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGAD-GLVKLWTVRT 495 (768)
Q Consensus 452 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d-g~i~iwd~~~ 495 (768)
.++.++-.+. -..+.+.+.|+|+|.+||++..| .-|++|.-++
T Consensus 606 pt~~lID~~~-vd~~~~sls~SPngD~LAT~Hvd~~gIylWsNks 649 (910)
T KOG1539|consen 606 PTGTLIDGLL-VDSPCTSLSFSPNGDFLATVHVDQNGIYLWSNKS 649 (910)
T ss_pred cCcceeeeEe-cCCcceeeEECCCCCEEEEEEecCceEEEEEchh
Confidence 9999998886 67889999999999999999998 4799996443
No 29
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.1e-37 Score=316.97 Aligned_cols=274 Identities=27% Similarity=0.474 Sum_probs=241.1
Q ss_pred CCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCce
Q 004214 239 NEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC 318 (768)
Q Consensus 239 ~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 318 (768)
...+.|..|+ ++..++|.|..|..|++|.+...+.. .++... .+ . .+=+++.|-.+.+.|..+..
T Consensus 378 ~~~v~ca~fS-ddssmlA~Gf~dS~i~~~Sl~p~kl~-~lk~~~-~l-----------~-~~d~~sad~~~~~~D~~~~~ 442 (707)
T KOG0263|consen 378 YQGVTCAEFS-DDSSMLACGFVDSSVRVWSLTPKKLK-KLKDAS-DL-----------S-NIDTESADVDVDMLDDDSSG 442 (707)
T ss_pred CCcceeEeec-CCcchhhccccccEEEEEecchhhhc-cccchh-hh-----------c-cccccccchhhhhccccCCc
Confidence 4456666666 56679999999999999998765322 222111 00 0 13334445557777887777
Q ss_pred EEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEE
Q 004214 319 CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTG 398 (768)
Q Consensus 319 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 398 (768)
....+.+|.++|..+.|+|+ .++|++++.|+++++|.+. .........+|..+|..+.|+|.|-++|++
T Consensus 443 ~~~~L~GH~GPVyg~sFsPd-~rfLlScSED~svRLWsl~----------t~s~~V~y~GH~~PVwdV~F~P~GyYFata 511 (707)
T KOG0263|consen 443 TSRTLYGHSGPVYGCSFSPD-RRFLLSCSEDSSVRLWSLD----------TWSCLVIYKGHLAPVWDVQFAPRGYYFATA 511 (707)
T ss_pred eeEEeecCCCceeeeeeccc-ccceeeccCCcceeeeecc----------cceeEEEecCCCcceeeEEecCCceEEEec
Confidence 78889999999999999999 4599999999999999998 455777788999999999999999999999
Q ss_pred eCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCE
Q 004214 399 SQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQ 478 (768)
Q Consensus 399 ~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 478 (768)
+.|++.++|......+.+.+.+|-..|.|+.|+|+..++++||.|.+||+||+.+|..++.|.||.++|++++|||+|++
T Consensus 512 s~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~ 591 (707)
T KOG0263|consen 512 SHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRY 591 (707)
T ss_pred CCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCH
Q 004214 479 IVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTA 538 (768)
Q Consensus 479 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~ 538 (768)
|++|+.||.|++||+.+++.+..+.+|.+.|.++.||.+|..||+||.|..|++||+...
T Consensus 592 LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 592 LASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred EeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 999999999999999999999999999999999999999999999999999999998654
No 30
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=5e-38 Score=294.12 Aligned_cols=286 Identities=24% Similarity=0.433 Sum_probs=256.1
Q ss_pred cCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCc
Q 004214 238 YNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR 317 (768)
Q Consensus 238 ~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 317 (768)
....|..+.|.| +++.|++|+..|.+.+|+..+......++.|..+|.++. +++++.. +++|+.+|.|++|+..-.
T Consensus 95 vkc~V~~v~WtP-eGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~--ws~~g~w-miSgD~gG~iKyWqpnmn 170 (464)
T KOG0284|consen 95 VKCPVNVVRWTP-EGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMK--WSHNGTW-MISGDKGGMIKYWQPNMN 170 (464)
T ss_pred cccceeeEEEcC-CCceeEeecccccEEEecCceeeHHHHhhhhcccceeEE--EccCCCE-EEEcCCCceEEecccchh
Confidence 355788899985 788999999999999999988877778899999999998 7777776 999999999999998766
Q ss_pred eEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEE
Q 004214 318 CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCT 397 (768)
Q Consensus 318 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 397 (768)
........|...|++++|+|+.. .|++++.||+|+|||.... +....+.+|.-.|.+++|+|...++++
T Consensus 171 nVk~~~ahh~eaIRdlafSpnDs-kF~t~SdDg~ikiWdf~~~----------kee~vL~GHgwdVksvdWHP~kgLias 239 (464)
T KOG0284|consen 171 NVKIIQAHHAEAIRDLAFSPNDS-KFLTCSDDGTIKIWDFRMP----------KEERVLRGHGWDVKSVDWHPTKGLIAS 239 (464)
T ss_pred hhHHhhHhhhhhhheeccCCCCc-eeEEecCCCeEEEEeccCC----------chhheeccCCCCcceeccCCccceeEE
Confidence 54444445669999999999755 7999999999999998743 355566899999999999999999999
Q ss_pred EeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEe-CC
Q 004214 398 GSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLT-RG 476 (768)
Q Consensus 398 ~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~-~~ 476 (768)
|+.|..|++||.+++.++.++.+|...|..+.|+|++++|+++|.|..+++||+++-+.+.++++|...|+++.|+| ..
T Consensus 240 gskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~ 319 (464)
T KOG0284|consen 240 GSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNE 319 (464)
T ss_pred ccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999 45
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEe-ccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCH
Q 004214 477 AQIVSCGADGLVKLWTVRTGECIATY-DKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTA 538 (768)
Q Consensus 477 ~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~ 538 (768)
..|.+|+.||.|..|.+...+++..+ .+|...||+|+|+|-|..|++|+.|.++++|....+
T Consensus 320 ~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~rp 382 (464)
T KOG0284|consen 320 SLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRNRP 382 (464)
T ss_pred cceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccCCC
Confidence 68889999999999999866666655 479999999999999999999999999999986543
No 31
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=1.3e-35 Score=296.03 Aligned_cols=482 Identities=21% Similarity=0.282 Sum_probs=338.6
Q ss_pred EEEeec--CCCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeC--CCcEEEEECCCCeeEEEecCcccee
Q 004214 2 FALLEG--ADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSD--DATVRVWDLLAKKCVATLDKHFSRV 77 (768)
Q Consensus 2 ~latg~--~dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~--dg~I~iWd~~~~~~~~~l~~h~~~V 77 (768)
|+|+|- ....++||++.....+..|..|+-.|+|++|+|.+++ +++.+. |-.|.+||+........-+ -.+.|
T Consensus 92 yvatGEcG~~pa~kVw~la~h~vVAEfvdHKY~vtcvaFsp~~ky--vvSVGsQHDMIVnv~dWr~N~~~asnk-iss~V 168 (1080)
T KOG1408|consen 92 YVATGECGRTPASKVWSLAFHGVVAEFVDHKYNVTCVAFSPGNKY--VVSVGSQHDMIVNVNDWRVNSSGASNK-ISSVV 168 (1080)
T ss_pred EEEecccCCCccceeeeeccccchhhhhhccccceeeeecCCCcE--EEeeccccceEEEhhhhhhcccccccc-cceeE
Confidence 788875 6778999999998899999999999999999999887 665544 5678899986554443322 45679
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCeeee-eeec--------------------------------ce--------
Q 004214 78 TSMAITSDGSTLISAGRDKVVNLWDLRDYSCKL-TVPT--------------------------------YE-------- 116 (768)
Q Consensus 78 ~~l~fs~d~~~L~s~~~dg~i~vWd~~~~~~~~-~~~~--------------------------------~~-------- 116 (768)
..++|+.||.|++|++. .+|++|.++.++... .+|. ..
T Consensus 169 sav~fsEdgSYfvT~gn-rHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFS 247 (1080)
T KOG1408|consen 169 SAVAFSEDGSYFVTSGN-RHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFS 247 (1080)
T ss_pred EEEEEccCCceeeeeee-eeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceeeec
Confidence 99999999999999985 679999986654110 0000 00
Q ss_pred --------------eEeeEEec-----------------CCCCCccccc------ccc----ch--------------hh
Q 004214 117 --------------MVEAVCAI-----------------PPGSAFDSFL------SSY----NQ--------------QT 141 (768)
Q Consensus 117 --------------~v~~~~~~-----------------~~~~~~~~~~------~~~----~~--------------~~ 141 (768)
...+++.+ |..-.++..+ +.. .+ ..
T Consensus 248 sRRLLDKWVqcRTTnAnCIcVs~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~ 327 (1080)
T KOG1408|consen 248 SRRLLDKWVQCRTTNANCICVSSRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDA 327 (1080)
T ss_pred hhhhhhhhhhhhccccceeeeecceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCce
Confidence 00111111 1110111000 000 00 00
Q ss_pred hhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCce-----eecccccC-cccceeEEEEccCCCceEEEEecCeEE
Q 004214 142 IKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDV-----TISFEMDD-SKRGFTAATVLPSNQGLLCVTADQQLL 215 (768)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~-----~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~dg~i~ 215 (768)
...........+.+.-.|..+++||++.-.......... ......-. ....... +.. ....+++.+.|++|+
T Consensus 328 IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~-acl-p~~cF~TCSsD~TIR 405 (1080)
T KOG1408|consen 328 IACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTA-ACL-PRGCFTTCSSDGTIR 405 (1080)
T ss_pred eEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCccc-ccC-CccceeEecCCCcEE
Confidence 011112234567788889999999997762221111100 00000000 0000011 111 233488999999999
Q ss_pred EEeeccCcccce-----------eeE-------------------EEeeecccCCceeEEEEecCCCCEEEEEeCCCcEE
Q 004214 216 LYTTVEVPEKKM-----------ELI-------------------LSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQ 265 (768)
Q Consensus 216 ~~~~~~~~~~~~-----------~~~-------------------~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~ 265 (768)
+|++........ ..+ .....-+....+.+++.+ +++++||.|...|.++
T Consensus 406 lW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vS-p~gqhLAsGDr~Gnlr 484 (1080)
T KOG1408|consen 406 LWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVS-PDGQHLASGDRGGNLR 484 (1080)
T ss_pred EeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEEC-CCcceecccCccCceE
Confidence 999887321111 000 000111223456777776 5899999999999999
Q ss_pred EEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCC-ceEEEeeecccCcEEEEEEecCC-CcEE
Q 004214 266 VYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES-RCCVGVGTGHMGAVGAVAFSKKL-QNFL 343 (768)
Q Consensus 266 i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~~l 343 (768)
+|++...+....+..|...|.|+.+.+-.-+..+|++++.|..|++||... -.++.++.+|...|+++.|.-.| +..+
T Consensus 485 Vy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~M 564 (1080)
T KOG1408|consen 485 VYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKM 564 (1080)
T ss_pred EEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEE
Confidence 999999999999999999999998555455667899999999999999864 45677889999999999998765 3458
Q ss_pred EEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEec---
Q 004214 344 VSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG--- 420 (768)
Q Consensus 344 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--- 420 (768)
++++.|..|.+--....... ..-...........+..+++.|+.+++++++.|..|+||++.+++....|++
T Consensus 565 iscGADksimFr~~qk~~~g-----~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~ 639 (1080)
T KOG1408|consen 565 ISCGADKSIMFRVNQKASSG-----RLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRD 639 (1080)
T ss_pred EeccCchhhheehhccccCc-----eeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeeccccc
Confidence 89999988765433211110 0111111122235688999999999999999999999999999999999986
Q ss_pred cCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCC
Q 004214 421 HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRT 495 (768)
Q Consensus 421 ~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 495 (768)
|.+....+...|.|.++++.+.|+++.++|..+|+|+.+..||...|+.+.|++|-+.|++.+.||.|.||.+..
T Consensus 640 ~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 640 HEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred CCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence 666778899999999999999999999999999999999999999999999999999999999999999999864
No 32
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=2.4e-36 Score=277.83 Aligned_cols=289 Identities=26% Similarity=0.490 Sum_probs=255.7
Q ss_pred EEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEE
Q 004214 22 CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLW 101 (768)
Q Consensus 22 ~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vW 101 (768)
..+.++||.+.|.|+++.|-..+ +++|+.|++|+|||+.+|++..++.||-..|..+++|+--.||++++.|+.|+.|
T Consensus 143 l~rVi~gHlgWVr~vavdP~n~w--f~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCw 220 (460)
T KOG0285|consen 143 LYRVISGHLGWVRSVAVDPGNEW--FATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCW 220 (460)
T ss_pred ehhhhhhccceEEEEeeCCCcee--EEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEE
Confidence 45678899999999999997666 9999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCcee
Q 004214 102 DLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVT 181 (768)
Q Consensus 102 d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~ 181 (768)
|++..+
T Consensus 221 DLe~nk-------------------------------------------------------------------------- 226 (460)
T KOG0285|consen 221 DLEYNK-------------------------------------------------------------------------- 226 (460)
T ss_pred echhhh--------------------------------------------------------------------------
Confidence 886543
Q ss_pred ecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCC
Q 004214 182 ISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNI 261 (768)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~ 261 (768)
T Consensus 227 -------------------------------------------------------------------------------- 226 (460)
T KOG0285|consen 227 -------------------------------------------------------------------------------- 226 (460)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCc
Q 004214 262 EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQN 341 (768)
Q Consensus 262 ~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 341 (768)
.++.+.||-+.|+|++ ..|.... |++|+.|.++++||+++...+..+.+|..+|..+.+.|..+
T Consensus 227 ------------vIR~YhGHlS~V~~L~--lhPTldv-l~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dp- 290 (460)
T KOG0285|consen 227 ------------VIRHYHGHLSGVYCLD--LHPTLDV-LVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDP- 290 (460)
T ss_pred ------------hHHHhccccceeEEEe--cccccee-EEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCC-
Confidence 2234567888888887 5565555 99999999999999999999999999999999999998766
Q ss_pred EEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEecc
Q 004214 342 FLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGH 421 (768)
Q Consensus 342 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 421 (768)
.+++|+.|++|++||+.. .+.......|...+.+++.+|....+|+++.| .|+-|++..+..+..+.+|
T Consensus 291 qvit~S~D~tvrlWDl~a----------gkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh 359 (460)
T KOG0285|consen 291 QVITGSHDSTVRLWDLRA----------GKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGH 359 (460)
T ss_pred ceEEecCCceEEEeeecc----------CceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccc
Confidence 599999999999999984 44677788899999999999999999999887 5999999999999999999
Q ss_pred CCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEee--------cCCCcEEEEEEEeCCCEEEEEeCCCcEEEEEC
Q 004214 422 KRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFE--------GHTSSVLRASFLTRGAQIVSCGADGLVKLWTV 493 (768)
Q Consensus 422 ~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~--------~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 493 (768)
..-|.+++...|| ++++|+.+|.+.+||.++|-..+.+. .....|.+.+|...|..|++|..|.+|++|.-
T Consensus 360 ~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~ke 438 (460)
T KOG0285|consen 360 NAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKE 438 (460)
T ss_pred cceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEec
Confidence 9999999998765 67889999999999999987665552 13457899999999999999999999999964
Q ss_pred C
Q 004214 494 R 494 (768)
Q Consensus 494 ~ 494 (768)
+
T Consensus 439 D 439 (460)
T KOG0285|consen 439 D 439 (460)
T ss_pred c
Confidence 3
No 33
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=2.7e-34 Score=286.68 Aligned_cols=494 Identities=18% Similarity=0.291 Sum_probs=355.8
Q ss_pred EEeecCCCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCC-ccEEEEEeCCCcEEEEECCCC--eeEEEecCccceeEE
Q 004214 3 ALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTD-KSLLFSGSDDATVRVWDLLAK--KCVATLDKHFSRVTS 79 (768)
Q Consensus 3 latg~~dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~-~~~l~sg~~dg~I~iWd~~~~--~~~~~l~~h~~~V~~ 79 (768)
+++.|+...|.+||......+..+.||.++|+|+.|-|+.+ ...+++|+.|+.|++|.+... .++.++.+|...+.|
T Consensus 27 ~vafGa~~~Iav~dp~k~~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~~c 106 (764)
T KOG1063|consen 27 LVAFGAGPAIAVADPEKILIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKECVC 106 (764)
T ss_pred eEEecCCceEEEeCcccceeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcceeEEE
Confidence 56678899999999999988999999999999999998766 124999999999999999733 456677776665555
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCe--eeeeeec--ce-eEeeEEecCCCCCccccccccchhhhhcccCCcceEEE
Q 004214 80 MAITSDGSTLISAGRDKVVNLWDLRDYS--CKLTVPT--YE-MVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFI 154 (768)
Q Consensus 80 l~fs~d~~~L~s~~~dg~i~vWd~~~~~--~~~~~~~--~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (768)
+ ........+...|+.+.+||.+..+ +...+.. .. ...++++.++. ....++
T Consensus 107 v--~a~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~---------------------~~~lla 163 (764)
T KOG1063|consen 107 V--VARSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNN---------------------KTFLLA 163 (764)
T ss_pred E--EeeeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccC---------------------CcEEEE
Confidence 4 4333333334789999999995544 2212211 11 11223333311 223566
Q ss_pred EeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCC---ceEEEEecCeEEEEeeccCcccc-----
Q 004214 155 TVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQ---GLLCVTADQQLLLYTTVEVPEKK----- 226 (768)
Q Consensus 155 ~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~~~~dg~i~~~~~~~~~~~~----- 226 (768)
.++.+..|.++.-...+.. .-.....+.+-+..+.|...+. .+++++.|..|++|.+.......
T Consensus 164 ~Ggs~~~v~~~s~~~d~f~--------~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e 235 (764)
T KOG1063|consen 164 CGGSKFVVDLYSSSADSFA--------RVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNERE 235 (764)
T ss_pred ecCcceEEEEeccCCccee--------EEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccc
Confidence 7777777877765533111 1112223334444444443333 45667789999999877655111
Q ss_pred ------------eee-------EEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeee----e---eeC
Q 004214 227 ------------MEL-------ILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSY----V---LAG 280 (768)
Q Consensus 227 ------------~~~-------~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~----~---~~~ 280 (768)
+.. .....+.||.+.|.++.|.+ ....|++++.|.++.+|...+..-+. . ..+
T Consensus 236 ~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p-~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg 314 (764)
T KOG1063|consen 236 DSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHP-EGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGG 314 (764)
T ss_pred cccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEcc-chhhheecccCcceEEEecCCccceEEEEEEeecccc
Confidence 011 01123459999999999986 44678889999999999887653221 1 222
Q ss_pred CccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCC---ceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeC
Q 004214 281 HSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES---RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSF 357 (768)
Q Consensus 281 ~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~ 357 (768)
......... +++++. .+++-+..|..++|.... -.....+.||.+.|+.++|.|.|. ++++.+.|-+-++|--
T Consensus 315 ~a~GF~g~l--w~~n~~-~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGe-flLsvs~DQTTRlFa~ 390 (764)
T KOG1063|consen 315 SAGGFWGGL--WSPNSN-VIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGE-FLLSVSLDQTTRLFAR 390 (764)
T ss_pred cccceeeEE--EcCCCC-EEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCC-EEEEeccccceeeecc
Confidence 233344443 556655 488889999999998333 234456789999999999999987 8999999999999865
Q ss_pred CCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC--------------------------
Q 004214 358 DGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPD-------------------------- 411 (768)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~-------------------------- 411 (768)
-+.+ .........+-|+.+++|+++-+....+++|.....+++|+.+.
T Consensus 391 wg~q------~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~V 464 (764)
T KOG1063|consen 391 WGRQ------QEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANV 464 (764)
T ss_pred cccc------cceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhccccccc
Confidence 4211 12455566677999999999998777888888889999997531
Q ss_pred -----------------Cc---------------------------------eEEEEeccCCCeEEEEEccCCCEEEEee
Q 004214 412 -----------------LV---------------------------------SVVTFRGHKRGIWSVEFSPVDQVVITAS 441 (768)
Q Consensus 412 -----------------~~---------------------------------~~~~~~~~~~~v~~v~~s~~~~~l~t~~ 441 (768)
|. .+..+.||...|.+++.+|+++++|+++
T Consensus 465 paLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaC 544 (764)
T KOG1063|consen 465 PALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASAC 544 (764)
T ss_pred ccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehh
Confidence 00 0112237888999999999999999998
Q ss_pred CCC-----cEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeE----EEEeccCCCcEEEE
Q 004214 442 GDK-----TIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGEC----IATYDKHEDKIWAL 512 (768)
Q Consensus 442 ~d~-----~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~l 512 (768)
... .|++|+..+...++.+.+|.-.|+.++|||||++|++.+.|+++.+|....+.. ....+.|..-||+.
T Consensus 545 KS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdc 624 (764)
T KOG1063|consen 545 KSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDC 624 (764)
T ss_pred hhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEc
Confidence 643 599999999999999999999999999999999999999999999998764421 23367899999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEcCCH
Q 004214 513 AVGKKTEMFATGGSDALVNLWHDSTA 538 (768)
Q Consensus 513 ~~s~~~~~l~s~~~dg~v~vw~~~~~ 538 (768)
.|+|++.+++|+|.|..|.+|.....
T Consensus 625 sW~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 625 SWSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred ccCcccceeEEecCCceEEEEeccCc
Confidence 99999999999999999999998765
No 34
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-34 Score=283.93 Aligned_cols=412 Identities=19% Similarity=0.341 Sum_probs=315.8
Q ss_pred EEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 004214 24 HYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDL 103 (768)
Q Consensus 24 ~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~ 103 (768)
+++..|...|.++.|||...+ ++++-..|.|.|||.++...+..+.-..-+|.+..|-+-.+++++|+.|..|+|++.
T Consensus 7 rk~~~rSdRVKsVd~HPtePw--~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfny 84 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPTEPW--ILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNY 84 (794)
T ss_pred hHhhccCCceeeeecCCCCce--EEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEec
Confidence 345569999999999997555 888899999999999999999999988899999999999999999999999999999
Q ss_pred CCCeeeeeeecce-eEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceee
Q 004214 104 RDYSCKLTVPTYE-MVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTI 182 (768)
Q Consensus 104 ~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~ 182 (768)
.+++.+..+..+. .+.+++..|..+ +++++++|-.|++|+.+.+
T Consensus 85 nt~ekV~~FeAH~DyIR~iavHPt~P-----------------------~vLtsSDDm~iKlW~we~~------------ 129 (794)
T KOG0276|consen 85 NTGEKVKTFEAHSDYIRSIAVHPTLP-----------------------YVLTSSDDMTIKLWDWENE------------ 129 (794)
T ss_pred ccceeeEEeeccccceeeeeecCCCC-----------------------eEEecCCccEEEEeeccCc------------
Confidence 9999999997665 488888888765 8999999999999998765
Q ss_pred cccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCC
Q 004214 183 SFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIE 262 (768)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~ 262 (768)
......+.||..-|.+++|.|.+.+.+|+++-|+
T Consensus 130 ----------------------------------------------wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDr 163 (794)
T KOG0276|consen 130 ----------------------------------------------WACEQTFEGHEHYVMQVAFNPKDPNTFASASLDR 163 (794)
T ss_pred ----------------------------------------------eeeeeEEcCcceEEEEEEecCCCccceeeeeccc
Confidence 2234567789999999999999999999999999
Q ss_pred cEEEEECCCceeeeeeeCCccceEEEeeeeecC-CCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCc
Q 004214 263 QVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSS-GKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQN 341 (768)
Q Consensus 263 ~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 341 (768)
+|++|.+.+..+..++.+|...|.|++ +.+. ++.++++|+.|.+|++||.++..|++++.+|...|..++|+|.-+
T Consensus 164 TVKVWslgs~~~nfTl~gHekGVN~Vd--yy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lp- 240 (794)
T KOG0276|consen 164 TVKVWSLGSPHPNFTLEGHEKGVNCVD--YYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELP- 240 (794)
T ss_pred cEEEEEcCCCCCceeeeccccCcceEE--eccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCc-
Confidence 999999999999999999999999998 4443 345699999999999999999999999999999999999999966
Q ss_pred EEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEe--
Q 004214 342 FLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFR-- 419 (768)
Q Consensus 342 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-- 419 (768)
++++|+.||++++|+-.+. +....+.-....+.|++-.+.++.+++|...|.|.+= +-..++..++.
T Consensus 241 iiisgsEDGTvriWhs~Ty----------~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v~-lgreeP~vsMd~~ 309 (794)
T KOG0276|consen 241 IIISGSEDGTVRIWNSKTY----------KLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTVK-LGREEPAVSMDSN 309 (794)
T ss_pred EEEEecCCccEEEecCcce----------ehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEEE-ccCCCCceeecCC
Confidence 8999999999999987643 2233333345678888888888888888877765442 21111111110
Q ss_pred ------cc---------------------------------CCCeEEEEEccCCCEEEEeeCCCcEEEEeCC------CC
Q 004214 420 ------GH---------------------------------KRGIWSVEFSPVDQVVITASGDKTIKIWSIS------DG 454 (768)
Q Consensus 420 ------~~---------------------------------~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~------~~ 454 (768)
.| .-....++-+|+|++++++ .||.-.||..- .|
T Consensus 310 gKIiwa~~~ei~~~~~ks~~~~~ev~DgErL~LsvKeLgs~eiyPq~L~hsPNGrfV~Vc-gdGEyiIyTala~RnK~fG 388 (794)
T KOG0276|consen 310 GKIIWAVHSEIQAVNLKSVGAQKEVTDGERLPLSVKELGSVEIYPQTLAHSPNGRFVVVC-GDGEYIIYTALALRNKAFG 388 (794)
T ss_pred ccEEEEcCceeeeeeceeccCcccccCCccccchhhhccccccchHHhccCCCCcEEEEe-cCccEEEEEeeehhhcccc
Confidence 00 0112346678888877666 45777776521 11
Q ss_pred cee--------------------EEe---ecCCCcEEEEEEE---eCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCc
Q 004214 455 SCL--------------------KTF---EGHTSSVLRASFL---TRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDK 508 (768)
Q Consensus 455 ~~~--------------------~~~---~~~~~~v~~~~~s---~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 508 (768)
+.+ ..+ +.|.. .+..++ --|..|+....++.+++||..+++.++++....
T Consensus 389 ~~~eFvw~~dsne~avRes~~~vki~knfke~ks--i~~~~~~e~i~gg~Llg~~ss~~~~fydW~~~~lVrrI~v~~-- 464 (794)
T KOG0276|consen 389 SGLEFVWAADSNEFAVRESNGNVKIFKNFKEHKS--IRPDMSAEGIFGGPLLGVRSSDFLCFYDWESGELVRRIEVTS-- 464 (794)
T ss_pred cceeEEEcCCCCeEEEEecCCceEEEecceeccc--cccccceeeecCCceEEEEeCCeEEEEEcccceEEEEEeecc--
Confidence 111 111 11110 001111 113345555556779999999999999987443
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEEcCCHH
Q 004214 509 IWALAVGKKTEMFATGGSDALVNLWHDSTAA 539 (768)
Q Consensus 509 v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~~ 539 (768)
-.+.|+.+|.+++.++.|. .++...+...
T Consensus 465 -k~v~w~d~g~lVai~~d~S-fyil~~n~d~ 493 (794)
T KOG0276|consen 465 -KHVYWSDNGELVAIAGDDS-FYILKFNADA 493 (794)
T ss_pred -ceeEEecCCCEEEEEecCc-eeEEEecHHH
Confidence 3578999999888888665 5666665543
No 35
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=2.5e-37 Score=283.03 Aligned_cols=276 Identities=28% Similarity=0.560 Sum_probs=248.3
Q ss_pred CCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCce
Q 004214 239 NEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC 318 (768)
Q Consensus 239 ~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 318 (768)
...|.|+.| ++..+++|..|++|.+||..+..+.+.+.||++.|.|+.+ +..++++|+.|.+|++||.++++
T Consensus 197 skgVYClQY---DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqy-----d~rviisGSSDsTvrvWDv~tge 268 (499)
T KOG0281|consen 197 SKGVYCLQY---DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQY-----DERVIVSGSSDSTVRVWDVNTGE 268 (499)
T ss_pred CCceEEEEe---cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeec-----cceEEEecCCCceEEEEeccCCc
Confidence 456788887 6678999999999999999999999999999999999972 22369999999999999999999
Q ss_pred EEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEE
Q 004214 319 CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTG 398 (768)
Q Consensus 319 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 398 (768)
++.++-+|...|..+.|+.. ++++++.|.++.+||+.... .......+.+|...|+.+.|+ .++++++
T Consensus 269 ~l~tlihHceaVLhlrf~ng---~mvtcSkDrsiaVWdm~sps-------~it~rrVLvGHrAaVNvVdfd--~kyIVsA 336 (499)
T KOG0281|consen 269 PLNTLIHHCEAVLHLRFSNG---YMVTCSKDRSIAVWDMASPT-------DITLRRVLVGHRAAVNVVDFD--DKYIVSA 336 (499)
T ss_pred hhhHHhhhcceeEEEEEeCC---EEEEecCCceeEEEeccCch-------HHHHHHHHhhhhhheeeeccc--cceEEEe
Confidence 99999999999999999865 89999999999999998543 344666778999999999986 5699999
Q ss_pred eCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCE
Q 004214 399 SQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQ 478 (768)
Q Consensus 399 ~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 478 (768)
+.|.+|++|++.+++.+.++.+|..+|.|+.+. |+++++|+.|.+|++||+..|.|++.++||..-|.++.|. .+.
T Consensus 337 SgDRTikvW~~st~efvRtl~gHkRGIAClQYr--~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~kr 412 (499)
T KOG0281|consen 337 SGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKR 412 (499)
T ss_pred cCCceEEEEeccceeeehhhhcccccceehhcc--CeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--Cce
Confidence 999999999999999999999999999999886 9999999999999999999999999999999999999995 568
Q ss_pred EEEEeCCCcEEEEECCCCe---------EEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCHHH
Q 004214 479 IVSCGADGLVKLWTVRTGE---------CIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAE 540 (768)
Q Consensus 479 l~s~~~dg~i~iwd~~~~~---------~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~~~ 540 (768)
+++|+.||+|+|||+.++. |+.++..|.+.|..+.| |...+++++.|.+|.|||+..+..
T Consensus 413 IVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~~~ 481 (499)
T KOG0281|consen 413 IVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNGPP 481 (499)
T ss_pred eeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCCCCc
Confidence 9999999999999998764 55666779999999999 677899999999999999876543
No 36
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=3.9e-35 Score=264.27 Aligned_cols=287 Identities=23% Similarity=0.395 Sum_probs=257.2
Q ss_pred EeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEEC-CCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEE
Q 004214 232 SKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDL-SSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVR 310 (768)
Q Consensus 232 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~-~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~ 310 (768)
...+.+|.+.|..+.|.| ++..||+|+.|..|.+|+. ...+....+.+|.+.|..+. +..++.. +++++.|.+++
T Consensus 40 ~m~l~gh~geI~~~~F~P-~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~--~~~d~s~-i~S~gtDk~v~ 115 (338)
T KOG0265|consen 40 IMLLPGHKGEIYTIKFHP-DGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELH--GMRDGSH-ILSCGTDKTVR 115 (338)
T ss_pred hhhcCCCcceEEEEEECC-CCCeEeecCCcceEEEEeccccccceeeeccccceeEeee--eccCCCE-EEEecCCceEE
Confidence 356789999999999997 9999999999999999995 44556667889999999998 7777776 99999999999
Q ss_pred EEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEcc
Q 004214 311 LWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP 390 (768)
Q Consensus 311 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 390 (768)
.||.++|+....+++|..-|.++.-+.-|..++.+++.||++++||++...... ......+++++.|..
T Consensus 116 ~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~-----------t~~~kyqltAv~f~d 184 (338)
T KOG0265|consen 116 GWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIK-----------TFENKYQLTAVGFKD 184 (338)
T ss_pred EEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhh-----------ccccceeEEEEEecc
Confidence 999999999999999999999999888888899999999999999998432111 112245689999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCC----CceeEEeecCCC-
Q 004214 391 NDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISD----GSCLKTFEGHTS- 465 (768)
Q Consensus 391 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~----~~~~~~~~~~~~- 465 (768)
.+..+.+|+-|+.|++||++.......+.||..+|+.+..+|+|.++.+-+.|.++++||++. ..++..+.+|..
T Consensus 185 ~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hn 264 (338)
T KOG0265|consen 185 TSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHN 264 (338)
T ss_pred cccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhh
Confidence 999999999999999999999999999999999999999999999999999999999999875 356888887654
Q ss_pred ---cEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEE
Q 004214 466 ---SVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 533 (768)
Q Consensus 466 ---~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw 533 (768)
....++|+|+++.+..|+.|..+++||..+...+..+.+|.+.|.+++|+|....|.+++.|.+|++=
T Consensus 265 feknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lg 335 (338)
T KOG0265|consen 265 FEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLG 335 (338)
T ss_pred hhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEee
Confidence 45788999999999999999999999999989999999999999999999999999999999998873
No 37
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=3.7e-35 Score=264.38 Aligned_cols=286 Identities=27% Similarity=0.463 Sum_probs=247.7
Q ss_pred EEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEEC-CCCeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 004214 24 HYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDL-LAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWD 102 (768)
Q Consensus 24 ~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~-~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd 102 (768)
..+.||++.|..+.|+|+|.. +|||+.|..|.+|++ ...+-...+++|++.|..+.|++|++.++++|.|.+|+.||
T Consensus 41 m~l~gh~geI~~~~F~P~gs~--~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD 118 (338)
T KOG0265|consen 41 MLLPGHKGEIYTIKFHPDGSC--FASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWD 118 (338)
T ss_pred hhcCCCcceEEEEEECCCCCe--EeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEe
Confidence 467799999999999999988 999999999999996 45566788999999999999999999999999999999999
Q ss_pred CCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceee
Q 004214 103 LRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTI 182 (768)
Q Consensus 103 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~ 182 (768)
.++|++++.+
T Consensus 119 ~~tG~~~rk~---------------------------------------------------------------------- 128 (338)
T KOG0265|consen 119 AETGKRIRKH---------------------------------------------------------------------- 128 (338)
T ss_pred cccceeeehh----------------------------------------------------------------------
Confidence 9887655443
Q ss_pred cccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCC
Q 004214 183 SFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIE 262 (768)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~ 262 (768)
T Consensus 129 -------------------------------------------------------------------------------- 128 (338)
T KOG0265|consen 129 -------------------------------------------------------------------------------- 128 (338)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcE
Q 004214 263 QVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNF 342 (768)
Q Consensus 263 ~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 342 (768)
++|...|..+. ...-+..++.+|+.||++++||+++...+..+. ....++++.|...+. .
T Consensus 129 ----------------k~h~~~vNs~~--p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~-q 188 (338)
T KOG0265|consen 129 ----------------KGHTSFVNSLD--PSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSD-Q 188 (338)
T ss_pred ----------------ccccceeeecC--ccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEeccccc-c
Confidence 33444444443 444566789999999999999999988887764 356799999998866 5
Q ss_pred EEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC----ceEEEE
Q 004214 343 LVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDL----VSVVTF 418 (768)
Q Consensus 343 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~ 418 (768)
+.+|+-|+.|++||++ ......+..+|.+.|+.+..+|+|.++.+-+-|.++++||++.. +++..+
T Consensus 189 v~sggIdn~ikvWd~r----------~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if 258 (338)
T KOG0265|consen 189 VISGGIDNDIKVWDLR----------KNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIF 258 (338)
T ss_pred eeeccccCceeeeccc----------cCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEe
Confidence 8999999999999997 44478888999999999999999999999999999999998743 457777
Q ss_pred eccCC----CeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEE
Q 004214 419 RGHKR----GIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLW 491 (768)
Q Consensus 419 ~~~~~----~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw 491 (768)
.+|.. ....++|+|+++.+.+|+.|+.+++||......+..+.||.+.|.++.|+|....|.+++.|.+|++=
T Consensus 259 ~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lg 335 (338)
T KOG0265|consen 259 QGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLG 335 (338)
T ss_pred ecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEee
Confidence 77543 34678999999999999999999999999889999999999999999999999999999999998863
No 38
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=3.3e-35 Score=270.40 Aligned_cols=292 Identities=24% Similarity=0.432 Sum_probs=264.9
Q ss_pred eeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCC
Q 004214 228 ELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDN 307 (768)
Q Consensus 228 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg 307 (768)
...+.+.+.+|.+.|.++++-| .+.+|++|+.|+.+.|||+.+++...++.||...|..++ +++... ++++++.|+
T Consensus 140 pwKl~rVi~gHlgWVr~vavdP-~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~va--vS~rHp-YlFs~gedk 215 (460)
T KOG0285|consen 140 PWKLYRVISGHLGWVRSVAVDP-GNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVA--VSKRHP-YLFSAGEDK 215 (460)
T ss_pred cceehhhhhhccceEEEEeeCC-CceeEEecCCCceeEEEEcccCeEEEeecchhheeeeee--ecccCc-eEEEecCCC
Confidence 3456677889999999999986 588999999999999999999999999999999999997 555555 599999999
Q ss_pred eEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEE
Q 004214 308 SVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLA 387 (768)
Q Consensus 308 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 387 (768)
.|+.||+..++.++.+.+|-+.|.|++.+|.-. .|++|+.|.++++||++ .......+.+|..+|.++.
T Consensus 216 ~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTld-vl~t~grDst~RvWDiR----------tr~~V~~l~GH~~~V~~V~ 284 (460)
T KOG0285|consen 216 QVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLD-VLVTGGRDSTIRVWDIR----------TRASVHVLSGHTNPVASVM 284 (460)
T ss_pred eeEEEechhhhhHHHhccccceeEEEeccccce-eEEecCCcceEEEeeec----------ccceEEEecCCCCcceeEE
Confidence 999999999999999999999999999999855 89999999999999998 4447788899999999999
Q ss_pred EccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcE
Q 004214 388 VAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSV 467 (768)
Q Consensus 388 ~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v 467 (768)
+.|-...+++|+.|++|++||+..++...++..|...|.+++.+|....+|+++.| .|+-|++..|..+..+.+|+.-|
T Consensus 285 ~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~ii 363 (460)
T KOG0285|consen 285 CQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAII 363 (460)
T ss_pred eecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhcccccccee
Confidence 99988899999999999999999999999999999999999999999999999886 59999999999999999999999
Q ss_pred EEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEec--------cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 004214 468 LRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD--------KHEDKIWALAVGKKTEMFATGGSDALVNLWHDS 536 (768)
Q Consensus 468 ~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--------~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~ 536 (768)
+++....|| ++++|+..|.+.+||.++|-..+... ..+..|++.+|...|..|++|..|.+|++|+-.
T Consensus 364 ntl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keD 439 (460)
T KOG0285|consen 364 NTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKED 439 (460)
T ss_pred eeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEecc
Confidence 999998887 88899999999999999986655442 134568999999999999999999999999754
No 39
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=2.3e-36 Score=282.95 Aligned_cols=282 Identities=28% Similarity=0.473 Sum_probs=246.9
Q ss_pred CCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEEECCCCee
Q 004214 29 HKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSC 108 (768)
Q Consensus 29 h~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~~~~~ 108 (768)
-+..|..+.|.|+|++ |++|+..|.+.+|+..+-.--..+..|.++|+++.|+++|.+++|++.+|.|++|+..-..
T Consensus 95 vkc~V~~v~WtPeGRR--Lltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn- 171 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRR--LLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN- 171 (464)
T ss_pred cccceeeEEEcCCCce--eEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh-
Confidence 3558999999999999 9999999999999985544445567899999999999999999999999999999763211
Q ss_pred eeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccC
Q 004214 109 KLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDD 188 (768)
Q Consensus 109 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 188 (768)
T Consensus 172 -------------------------------------------------------------------------------- 171 (464)
T KOG0284|consen 172 -------------------------------------------------------------------------------- 171 (464)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeec-ccCCceeEEEEecCCCCEEEEEeCCCcEEEE
Q 004214 189 SKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLV-GYNEEILDLKFLGEEEQYLAVATNIEQVQVY 267 (768)
Q Consensus 189 ~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~ 267 (768)
.+... .|...|++++|+| ++..+++++.||.|+||
T Consensus 172 -------------------------------------------Vk~~~ahh~eaIRdlafSp-nDskF~t~SdDg~ikiW 207 (464)
T KOG0284|consen 172 -------------------------------------------VKIIQAHHAEAIRDLAFSP-NDSKFLTCSDDGTIKIW 207 (464)
T ss_pred -------------------------------------------hHHhhHhhhhhhheeccCC-CCceeEEecCCCeEEEE
Confidence 01111 2336889999987 77899999999999999
Q ss_pred ECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEe
Q 004214 268 DLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGS 347 (768)
Q Consensus 268 d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~ 347 (768)
|.........+.+|.-.|.|++ +.|..+ ++++|++|..|++||.+++.++.++.+|...|..+.|+|++ ++|+++|
T Consensus 208 df~~~kee~vL~GHgwdVksvd--WHP~kg-LiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~-N~Llt~s 283 (464)
T KOG0284|consen 208 DFRMPKEERVLRGHGWDVKSVD--WHPTKG-LIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNG-NWLLTGS 283 (464)
T ss_pred eccCCchhheeccCCCCcceec--cCCccc-eeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCC-CeeEEcc
Confidence 9999999999999999999997 656555 59999999999999999999999999999999999999997 6999999
Q ss_pred CCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCceEEEEe-ccCCCe
Q 004214 348 SDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQDRTACVWRLPDLVSVVTFR-GHKRGI 425 (768)
Q Consensus 348 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v 425 (768)
.|..++++|++ ..+....+.+|.+.+++++|+| ...+|.+|+.||.|..|.+...+++..+. +|...|
T Consensus 284 kD~~~kv~DiR----------~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~i 353 (464)
T KOG0284|consen 284 KDQSCKVFDIR----------TMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEI 353 (464)
T ss_pred CCceEEEEehh----------HhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccce
Confidence 99999999998 3456777889999999999999 67899999999999999998666655543 699999
Q ss_pred EEEEEccCCCEEEEeeCCCcEEEEeC
Q 004214 426 WSVEFSPVDQVVITASGDKTIKIWSI 451 (768)
Q Consensus 426 ~~v~~s~~~~~l~t~~~d~~i~iwd~ 451 (768)
++++|+|-|.+|++|+.|.++++|.-
T Consensus 354 wsl~~hPlGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 354 WSLAYHPLGHILATGSNDRTVRFWTR 379 (464)
T ss_pred eeeeccccceeEeecCCCcceeeecc
Confidence 99999999999999999999999974
No 40
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.8e-34 Score=266.85 Aligned_cols=317 Identities=18% Similarity=0.265 Sum_probs=260.6
Q ss_pred EEEeecCCCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEE
Q 004214 2 FALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMA 81 (768)
Q Consensus 2 ~latg~~dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~ 81 (768)
++||||.|..-.||+..+|.....+.||+..|+|+.||.||.+ ||||+.+|.|+||...++.....+...-+.|.-|.
T Consensus 78 l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fshdgtl--LATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~ 155 (399)
T KOG0296|consen 78 LVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTL--LATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLK 155 (399)
T ss_pred eEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceE--EEecCCCccEEEEEcccCceEEEeecccCceEEEE
Confidence 6899999999999999999999999999999999999999988 99999999999999999999998887777888999
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcE
Q 004214 82 ITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGI 161 (768)
Q Consensus 82 fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 161 (768)
|+|-+..|+.|+.||.+-+|.+.++
T Consensus 156 WHp~a~illAG~~DGsvWmw~ip~~------------------------------------------------------- 180 (399)
T KOG0296|consen 156 WHPRAHILLAGSTDGSVWMWQIPSQ------------------------------------------------------- 180 (399)
T ss_pred ecccccEEEeecCCCcEEEEECCCc-------------------------------------------------------
Confidence 9999999999999988888876432
Q ss_pred EEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCc
Q 004214 162 VRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEE 241 (768)
Q Consensus 162 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (768)
T Consensus 181 -------------------------------------------------------------------------------- 180 (399)
T KOG0296|consen 181 -------------------------------------------------------------------------------- 180 (399)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEE
Q 004214 242 ILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVG 321 (768)
Q Consensus 242 i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 321 (768)
...+.+.+|+.+++|=. +.|+|++ +++|..||+|++||+.+++++.
T Consensus 181 -------------------------------~~~kv~~Gh~~~ct~G~--f~pdGKr-~~tgy~dgti~~Wn~ktg~p~~ 226 (399)
T KOG0296|consen 181 -------------------------------ALCKVMSGHNSPCTCGE--FIPDGKR-ILTGYDDGTIIVWNPKTGQPLH 226 (399)
T ss_pred -------------------------------ceeeEecCCCCCccccc--ccCCCce-EEEEecCceEEEEecCCCceeE
Confidence 11225566777777765 7888887 9999999999999999999988
Q ss_pred eeec-ccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEE---EccCCCEEEE
Q 004214 322 VGTG-HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLA---VAPNDSLVCT 397 (768)
Q Consensus 322 ~~~~-~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~s~~~~~l~~ 397 (768)
.+.. ......++.++..+. .++.|+.++.+++-+...+........ ........+...+.|+. ++..-.+.|+
T Consensus 227 ~~~~~e~~~~~~~~~~~~~~-~~~~g~~e~~~~~~~~~sgKVv~~~n~--~~~~l~~~~e~~~esve~~~~ss~lpL~A~ 303 (399)
T KOG0296|consen 227 KITQAEGLELPCISLNLAGS-TLTKGNSEGVACGVNNGSGKVVNCNNG--TVPELKPSQEELDESVESIPSSSKLPLAAC 303 (399)
T ss_pred EecccccCcCCccccccccc-eeEeccCCccEEEEccccceEEEecCC--CCccccccchhhhhhhhhcccccccchhhc
Confidence 7763 234567778877755 688888888888877654421111100 11111123444444444 4446678999
Q ss_pred EeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCC
Q 004214 398 GSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGA 477 (768)
Q Consensus 398 ~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~ 477 (768)
|+-||+|.|||+...++...+. |..+|+.+.|-+ ..+|++++.+|.|+.||.++|+++.++.||...|.+++++|+++
T Consensus 304 G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~ 381 (399)
T KOG0296|consen 304 GSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKR 381 (399)
T ss_pred ccccceEEEEecccchhheecc-CCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCc
Confidence 9999999999998877666555 899999999999 88999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCcEEEEECC
Q 004214 478 QIVSCGADGLVKLWTVR 494 (768)
Q Consensus 478 ~l~s~~~dg~i~iwd~~ 494 (768)
++++++.|++.+||++.
T Consensus 382 ~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 382 LVVTVSDDNTALVFEVP 398 (399)
T ss_pred EEEEecCCCeEEEEecC
Confidence 99999999999999864
No 41
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.2e-33 Score=251.02 Aligned_cols=290 Identities=29% Similarity=0.473 Sum_probs=240.4
Q ss_pred EEEEEEcCCCcEEEEEEeeC-CCccEEEEEeCCCcEEEEECCC---CeeEEEe-cCccceeEEEEEcCCCCEEEEEeCCC
Q 004214 22 CTHYFKGHKGVVSSILFHPD-TDKSLLFSGSDDATVRVWDLLA---KKCVATL-DKHFSRVTSMAITSDGSTLISAGRDK 96 (768)
Q Consensus 22 ~~~~l~gh~~~V~~l~~spd-~~~~~l~sg~~dg~I~iWd~~~---~~~~~~l-~~h~~~V~~l~fs~d~~~L~s~~~dg 96 (768)
..+.++||.+.|..++|+|- |. +||||+.|..|+||+... -.+...+ .+|+..|.+++|+|.|++|++++.|.
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~--ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~ 83 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGV--ILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDA 83 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCce--EEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccc
Confidence 46789999999999999996 44 599999999999999974 4555556 36999999999999999999999999
Q ss_pred eEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeec
Q 004214 97 VVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQK 176 (768)
Q Consensus 97 ~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~ 176 (768)
++.||.-..+
T Consensus 84 t~~Iw~k~~~---------------------------------------------------------------------- 93 (312)
T KOG0645|consen 84 TVVIWKKEDG---------------------------------------------------------------------- 93 (312)
T ss_pred eEEEeecCCC----------------------------------------------------------------------
Confidence 9999953211
Q ss_pred CCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEE
Q 004214 177 SSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLA 256 (768)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 256 (768)
T Consensus 94 -------------------------------------------------------------------------------- 93 (312)
T KOG0645|consen 94 -------------------------------------------------------------------------------- 93 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCC---ceEEEeeecccCcEEEE
Q 004214 257 VATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES---RCCVGVGTGHMGAVGAV 333 (768)
Q Consensus 257 ~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~---~~~~~~~~~~~~~v~~~ 333 (768)
..+++..+.||...|.|++ ++.+|+. ||+++.|..|-+|.... ..+...+++|+..|..+
T Consensus 94 --------------efecv~~lEGHEnEVK~Va--ws~sG~~-LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V 156 (312)
T KOG0645|consen 94 --------------EFECVATLEGHENEVKCVA--WSASGNY-LATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHV 156 (312)
T ss_pred --------------ceeEEeeeeccccceeEEE--EcCCCCE-EEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEE
Confidence 1233447888999999997 6666665 99999999999998874 46788899999999999
Q ss_pred EEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCc
Q 004214 334 AFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLV 413 (768)
Q Consensus 334 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~ 413 (768)
.|+|. ..+|++++.|.+|++|+-... -.......+.+|...|.+++|+|.|..|++++.|++++||...+.-
T Consensus 157 ~WHPt-~dlL~S~SYDnTIk~~~~~~d-------ddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~ 228 (312)
T KOG0645|consen 157 IWHPT-EDLLFSCSYDNTIKVYRDEDD-------DDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL 228 (312)
T ss_pred EEcCC-cceeEEeccCCeEEEEeecCC-------CCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCc
Confidence 99997 448999999999999986632 1556788889999999999999999999999999999999865321
Q ss_pred eEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCC------cee-EEeecCCCcEEEEEEEeC-CCEEEEEeCC
Q 004214 414 SVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG------SCL-KTFEGHTSSVLRASFLTR-GAQIVSCGAD 485 (768)
Q Consensus 414 ~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~------~~~-~~~~~~~~~v~~~~~s~~-~~~l~s~~~d 485 (768)
-..|..++..+.|. ...|++++.|+.|++|--... +.+ ..-..|...|++++|.|. .++|++|+.|
T Consensus 229 ----~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DD 302 (312)
T KOG0645|consen 229 ----SGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDD 302 (312)
T ss_pred ----chhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCC
Confidence 12378899999998 568999999999999986543 111 223468899999999995 7799999999
Q ss_pred CcEEEEECC
Q 004214 486 GLVKLWTVR 494 (768)
Q Consensus 486 g~i~iwd~~ 494 (768)
|.|++|.+.
T Consensus 303 G~v~~W~l~ 311 (312)
T KOG0645|consen 303 GIVNFWELE 311 (312)
T ss_pred ceEEEEEec
Confidence 999999864
No 42
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=2.3e-32 Score=262.79 Aligned_cols=461 Identities=17% Similarity=0.204 Sum_probs=346.2
Q ss_pred cEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEE--EeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCE
Q 004214 11 KVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFS--GSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGST 88 (768)
Q Consensus 11 ~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~s--g~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~ 88 (768)
.|++||..+-..++.+..-...|+|++||+.....+++. -+.+..+.|||+..+......+.-+..|....|.|.+..
T Consensus 135 hvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~n 214 (626)
T KOG2106|consen 135 HVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPN 214 (626)
T ss_pred eeeecccccceeeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCc
Confidence 699999999998999998889999999998644433443 355677999999999888888877888999999997776
Q ss_pred EEEEeCCCeEEEEECCCCeeeeeeec-----ceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEE
Q 004214 89 LISAGRDKVVNLWDLRDYSCKLTVPT-----YEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVR 163 (768)
Q Consensus 89 L~s~~~dg~i~vWd~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~ 163 (768)
|+.....+.+.+|+++.+...++... ...+.+++|.+++ .++++..+|.|.
T Consensus 215 liit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~eng------------------------dviTgDS~G~i~ 270 (626)
T KOG2106|consen 215 LIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENG------------------------DVITGDSGGNIL 270 (626)
T ss_pred EEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCC------------------------CEEeecCCceEE
Confidence 66666678999999999887665432 2458899999998 589999999999
Q ss_pred EEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCcee
Q 004214 164 MWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEIL 243 (768)
Q Consensus 164 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 243 (768)
+|+..+..+..+.. .+..++.+++...++. +++++.|..+..|+-.-.+. ....+....+.|.
T Consensus 271 Iw~~~~~~~~k~~~----------aH~ggv~~L~~lr~Gt-llSGgKDRki~~Wd~~y~k~------r~~elPe~~G~iR 333 (626)
T KOG2106|consen 271 IWSKGTNRISKQVH----------AHDGGVFSLCMLRDGT-LLSGGKDRKIILWDDNYRKL------RETELPEQFGPIR 333 (626)
T ss_pred EEeCCCceEEeEee----------ecCCceEEEEEecCcc-EeecCccceEEecccccccc------ccccCchhcCCee
Confidence 99997664433221 3446677777666555 45599999999999332221 1223334455666
Q ss_pred EEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEee
Q 004214 244 DLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVG 323 (768)
Q Consensus 244 ~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 323 (768)
.++-..++ +++|+..+.|.-=.++++-.+ ...+|.+....++ ..+... ++++++.|+.+++|+ ..++....
T Consensus 334 tv~e~~~d---i~vGTtrN~iL~Gt~~~~f~~-~v~gh~delwgla--~hps~~-q~~T~gqdk~v~lW~--~~k~~wt~ 404 (626)
T KOG2106|consen 334 TVAEGKGD---ILVGTTRNFILQGTLENGFTL-TVQGHGDELWGLA--THPSKN-QLLTCGQDKHVRLWN--DHKLEWTK 404 (626)
T ss_pred EEecCCCc---EEEeeccceEEEeeecCCceE-EEEecccceeeEE--cCCChh-heeeccCcceEEEcc--CCceeEEE
Confidence 66643322 888888777776666655444 5678888888886 555555 499999999999999 33333322
Q ss_pred ecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCc
Q 004214 324 TGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRT 403 (768)
Q Consensus 324 ~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~ 403 (768)
.-..++.|+.|+|.| .++.|+..|...+.|.... ....... .+.++++++|+|+|.+||+|+.|+.
T Consensus 405 -~~~d~~~~~~fhpsg--~va~Gt~~G~w~V~d~e~~----------~lv~~~~-d~~~ls~v~ysp~G~~lAvgs~d~~ 470 (626)
T KOG2106|consen 405 -IIEDPAECADFHPSG--VVAVGTATGRWFVLDTETQ----------DLVTIHT-DNEQLSVVRYSPDGAFLAVGSHDNH 470 (626)
T ss_pred -EecCceeEeeccCcc--eEEEeeccceEEEEecccc----------eeEEEEe-cCCceEEEEEcCCCCEEEEecCCCe
Confidence 245788999999997 6999999999999998742 1222222 3789999999999999999999999
Q ss_pred EEEEeCCCCceE-EE-EeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEE--------------ee----cC
Q 004214 404 ACVWRLPDLVSV-VT-FRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKT--------------FE----GH 463 (768)
Q Consensus 404 i~i~d~~~~~~~-~~-~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~--------------~~----~~ 463 (768)
|++|.+...... .. -+.+..+|+.+.||+|++++.+-+.|-.|..|....-..+.. |. .|
T Consensus 471 iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~ 550 (626)
T KOG2106|consen 471 IYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSD 550 (626)
T ss_pred EEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccC
Confidence 999998654322 22 223458999999999999999999999999995432221111 11 24
Q ss_pred CCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCe---EEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 004214 464 TSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE---CIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHD 535 (768)
Q Consensus 464 ~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~ 535 (768)
...|..++-+...+.+++|...|.|++|...-.+ ....+.+|.+.|++++|..+...+++.+.|..|..|++
T Consensus 551 ~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 551 GTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred CchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 4455556666778899999999999999865433 44567789999999999999999999889999999986
No 43
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.3e-35 Score=287.88 Aligned_cols=285 Identities=24% Similarity=0.408 Sum_probs=261.9
Q ss_pred eeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEE
Q 004214 233 KRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLW 312 (768)
Q Consensus 233 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iw 312 (768)
+.+..+.+.|-++.++| .++.++++-.+|.|.|||.++...++.+.-..-+|.+.. +....+. +++|+.|..|++|
T Consensus 7 rk~~~rSdRVKsVd~HP-tePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~k--fiaRknW-iv~GsDD~~IrVf 82 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHP-TEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAK--FIARKNW-IVTGSDDMQIRVF 82 (794)
T ss_pred hHhhccCCceeeeecCC-CCceEEEeeecCeeEEEecccceeeeeeeecccchhhhe--eeeccce-EEEecCCceEEEE
Confidence 34445777889999885 677888888889999999999999999998888888876 5555555 9999999999999
Q ss_pred eCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEcc-C
Q 004214 313 DSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP-N 391 (768)
Q Consensus 313 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~ 391 (768)
+..+++.+..+..|..-|.+++.+|..+ ++++++.|-+|++||... ......++.+|...|.+++|+| |
T Consensus 83 nynt~ekV~~FeAH~DyIR~iavHPt~P-~vLtsSDDm~iKlW~we~---------~wa~~qtfeGH~HyVMqv~fnPkD 152 (794)
T KOG0276|consen 83 NYNTGEKVKTFEAHSDYIRSIAVHPTLP-YVLTSSDDMTIKLWDWEN---------EWACEQTFEGHEHYVMQVAFNPKD 152 (794)
T ss_pred ecccceeeEEeeccccceeeeeecCCCC-eEEecCCccEEEEeeccC---------ceeeeeEEcCcceEEEEEEecCCC
Confidence 9999999999999999999999999955 899999999999999985 5668889999999999999999 7
Q ss_pred CCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCC--CEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEE
Q 004214 392 DSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVD--QVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLR 469 (768)
Q Consensus 392 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~--~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~ 469 (768)
.+.+|+++.|++|++|.+.+..+..++.+|..+|+|++|-+-| .+|++|+.|.+|+|||..+..|+++++||...|..
T Consensus 153 ~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~ 232 (794)
T KOG0276|consen 153 PNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSF 232 (794)
T ss_pred ccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceE
Confidence 7899999999999999999999999999999999999998854 69999999999999999999999999999999999
Q ss_pred EEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEE
Q 004214 470 ASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVN 531 (768)
Q Consensus 470 ~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~ 531 (768)
+.|+|.=..+++|++||+++||+..+.+...++...-.+||+++-.+.+..++.|..+|.|.
T Consensus 233 v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~ 294 (794)
T KOG0276|consen 233 VFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVT 294 (794)
T ss_pred EEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEE
Confidence 99999999999999999999999999999999887889999999999988999999888874
No 44
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=4.5e-36 Score=274.81 Aligned_cols=273 Identities=27% Similarity=0.513 Sum_probs=218.7
Q ss_pred EEeecCCCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEE
Q 004214 3 ALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAI 82 (768)
Q Consensus 3 latg~~dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~f 82 (768)
+++|..|++|+|||..+..+.+.|.||++.|-|+.|.. + ++++|+.|.+|+|||+.+|+++.++-+|...|..+.|
T Consensus 210 iVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~--r--viisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf 285 (499)
T KOG0281|consen 210 IVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDE--R--VIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRF 285 (499)
T ss_pred hhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccc--e--EEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEE
Confidence 56778888888888888888888888888888888754 3 4788888888888888888888888888888888888
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEE
Q 004214 83 TSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIV 162 (768)
Q Consensus 83 s~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i 162 (768)
+ +.+++|++.|.++.|||+.+..
T Consensus 286 ~--ng~mvtcSkDrsiaVWdm~sps------------------------------------------------------- 308 (499)
T KOG0281|consen 286 S--NGYMVTCSKDRSIAVWDMASPT------------------------------------------------------- 308 (499)
T ss_pred e--CCEEEEecCCceeEEEeccCch-------------------------------------------------------
Confidence 7 4478888888888888775421
Q ss_pred EEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCce
Q 004214 163 RMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEI 242 (768)
Q Consensus 163 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i 242 (768)
.....+.+.||...|
T Consensus 309 -----------------------------------------------------------------~it~rrVLvGHrAaV 323 (499)
T KOG0281|consen 309 -----------------------------------------------------------------DITLRRVLVGHRAAV 323 (499)
T ss_pred -----------------------------------------------------------------HHHHHHHHhhhhhhe
Confidence 011223456778888
Q ss_pred eEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEe
Q 004214 243 LDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGV 322 (768)
Q Consensus 243 ~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 322 (768)
..+.| +++++++++.|.+|++|++.++.+++++.+|...|.|+. - .+.++++|+.|.+|++||+..|.+++.
T Consensus 324 NvVdf---d~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQ----Y-r~rlvVSGSSDntIRlwdi~~G~cLRv 395 (499)
T KOG0281|consen 324 NVVDF---DDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQ----Y-RDRLVVSGSSDNTIRLWDIECGACLRV 395 (499)
T ss_pred eeecc---ccceEEEecCCceEEEEeccceeeehhhhcccccceehh----c-cCeEEEecCCCceEEEEeccccHHHHH
Confidence 88887 445999999999999999999999999999999999985 2 334699999999999999999999999
Q ss_pred eecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCC
Q 004214 323 GTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDR 402 (768)
Q Consensus 323 ~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg 402 (768)
+.||..-|.++.|... .+++|+.||+|++||+........ +...........|.+.|..+.|. ...+++++.|.
T Consensus 396 LeGHEeLvRciRFd~k---rIVSGaYDGkikvWdl~aaldpra-~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHdd 469 (499)
T KOG0281|consen 396 LEGHEELVRCIRFDNK---RIVSGAYDGKIKVWDLQAALDPRA-PASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDD 469 (499)
T ss_pred HhchHHhhhheeecCc---eeeeccccceEEEEecccccCCcc-cccchHHHhhhhccceeEEEeec--ceEEEeccCCC
Confidence 9999999999999865 599999999999999986543221 22333455566788899999985 56799999999
Q ss_pred cEEEEeCCCCceE
Q 004214 403 TACVWRLPDLVSV 415 (768)
Q Consensus 403 ~i~i~d~~~~~~~ 415 (768)
+|.|||+.++.+.
T Consensus 470 tILiWdFl~~~~~ 482 (499)
T KOG0281|consen 470 TILIWDFLNGPPS 482 (499)
T ss_pred eEEEEEcCCCCcc
Confidence 9999999876544
No 45
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=5e-35 Score=280.39 Aligned_cols=292 Identities=22% Similarity=0.393 Sum_probs=251.2
Q ss_pred EEEEEEcCCCcEEEEEEee-CCCccEEEEEeCCCcEEEEECCC-CeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEE
Q 004214 22 CTHYFKGHKGVVSSILFHP-DTDKSLLFSGSDDATVRVWDLLA-KKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVN 99 (768)
Q Consensus 22 ~~~~l~gh~~~V~~l~~sp-d~~~~~l~sg~~dg~I~iWd~~~-~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~ 99 (768)
.++.+.||+..|+++.|.| .+. +|++|+.|+.|+||++.. +++++++.+|..+|.+++|+++|..++|+|-|+.|+
T Consensus 206 ~~~~~~gH~kgvsai~~fp~~~h--LlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lK 283 (503)
T KOG0282|consen 206 LSHNLSGHTKGVSAIQWFPKKGH--LLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLK 283 (503)
T ss_pred heeeccCCccccchhhhccceee--EEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeee
Confidence 4688999999999999999 444 599999999999999976 999999999999999999999999999999999999
Q ss_pred EEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCc
Q 004214 100 LWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSD 179 (768)
Q Consensus 100 vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~ 179 (768)
+||+++|+++..+....
T Consensus 284 lwDtETG~~~~~f~~~~--------------------------------------------------------------- 300 (503)
T KOG0282|consen 284 LWDTETGQVLSRFHLDK--------------------------------------------------------------- 300 (503)
T ss_pred eeccccceEEEEEecCC---------------------------------------------------------------
Confidence 99999999877765322
Q ss_pred eeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEe
Q 004214 180 VTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVAT 259 (768)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 259 (768)
.+.++.|.|++.+.+++|+
T Consensus 301 -------------------------------------------------------------~~~cvkf~pd~~n~fl~G~ 319 (503)
T KOG0282|consen 301 -------------------------------------------------------------VPTCVKFHPDNQNIFLVGG 319 (503)
T ss_pred -------------------------------------------------------------CceeeecCCCCCcEEEEec
Confidence 3456666666778899999
Q ss_pred CCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeee-cccCcEEEEEEecC
Q 004214 260 NIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGT-GHMGAVGAVAFSKK 338 (768)
Q Consensus 260 ~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~ 338 (768)
.++.|+.||+++++.++.+..|-+.|..+. |.+.+.. +++.+.|+.+++|+......+.... .+.....++..+|+
T Consensus 320 sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~--F~~~g~r-FissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~ 396 (503)
T KOG0282|consen 320 SDKKIRQWDIRSGKVVQEYDRHLGAILDIT--FVDEGRR-FISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPN 396 (503)
T ss_pred CCCcEEEEeccchHHHHHHHhhhhheeeeE--EccCCce-EeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCC
Confidence 999999999999999999999999999998 8888887 9999999999999998876665433 33455678999999
Q ss_pred CCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccC--CCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEE
Q 004214 339 LQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHG--KDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVV 416 (768)
Q Consensus 339 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~ 416 (768)
++ ++++-+-|+.|.++.+... ........+.+|. +.-..+.|||||.+|++|+.||.+.+||.++-+.+.
T Consensus 397 ~~-~~~aQs~dN~i~ifs~~~~-------~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~ 468 (503)
T KOG0282|consen 397 GK-WFAAQSMDNYIAIFSTVPP-------FRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVS 468 (503)
T ss_pred CC-eehhhccCceEEEEecccc-------cccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhh
Confidence 76 8999999999999986532 2233344445553 455678999999999999999999999999999999
Q ss_pred EEeccCCCeEEEEEccCC-CEEEEeeCCCcEEEEe
Q 004214 417 TFRGHKRGIWSVEFSPVD-QVVITASGDKTIKIWS 450 (768)
Q Consensus 417 ~~~~~~~~v~~v~~s~~~-~~l~t~~~d~~i~iwd 450 (768)
.++.|..++..+.|+|.. ..+||++.||.|++||
T Consensus 469 ~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 469 KLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred ccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 999999999999999964 6899999999999996
No 46
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.8e-32 Score=243.52 Aligned_cols=290 Identities=26% Similarity=0.463 Sum_probs=246.6
Q ss_pred EEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCC---ceeeeee-eCCccceEEEeeeeecCCCEEEEEEeC
Q 004214 230 ILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSS---MSCSYVL-AGHSEIVLCLDTCALSSGKILIVTGSK 305 (768)
Q Consensus 230 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~---~~~~~~~-~~~~~~v~~l~~~~~~~~~~~l~~~~~ 305 (768)
.....+.+|.+.+..++|+|..+..||+++.|..|++|+... ..+...+ .+|+..|..++ +.|.++ +|++|+.
T Consensus 5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvA--wsp~g~-~La~aSF 81 (312)
T KOG0645|consen 5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVA--WSPHGR-YLASASF 81 (312)
T ss_pred eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeee--ecCCCc-EEEEeec
Confidence 345677899999999999987688999999999999999985 3444444 57999999997 777777 5999999
Q ss_pred CCeEEEEeCCC--ceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCe
Q 004214 306 DNSVRLWDSES--RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDI 383 (768)
Q Consensus 306 dg~i~iwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i 383 (768)
|.++.||.-.. .+++..+.+|...|.+++|+++|. +|++++.|++|-+|.+.... .......+..|...|
T Consensus 82 D~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~-~LATCSRDKSVWiWe~dedd-------Efec~aVL~~HtqDV 153 (312)
T KOG0645|consen 82 DATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGN-YLATCSRDKSVWIWEIDEDD-------EFECIAVLQEHTQDV 153 (312)
T ss_pred cceEEEeecCCCceeEEeeeeccccceeEEEEcCCCC-EEEEeeCCCeEEEEEecCCC-------cEEEEeeeccccccc
Confidence 99999997664 478889999999999999999976 89999999999999988443 455788889999999
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEeCC---CCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEe
Q 004214 384 NSLAVAPNDSLVCTGSQDRTACVWRLP---DLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTF 460 (768)
Q Consensus 384 ~~~~~s~~~~~l~~~~~dg~i~i~d~~---~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~ 460 (768)
..+.|+|...+|+++++|.+|++|+-. +..+..++.+|...|++++|+|.|..|++++.|++|+||-+.+.-.
T Consensus 154 K~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~---- 229 (312)
T KOG0645|consen 154 KHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLS---- 229 (312)
T ss_pred cEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCcc----
Confidence 999999999999999999999999876 3468899999999999999999999999999999999998652211
Q ss_pred ecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCC------eEEE-EeccCCCcEEEEEEcCC-CCEEEEEeCCCcEEE
Q 004214 461 EGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTG------ECIA-TYDKHEDKIWALAVGKK-TEMFATGGSDALVNL 532 (768)
Q Consensus 461 ~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~------~~~~-~~~~~~~~v~~l~~s~~-~~~l~s~~~dg~v~v 532 (768)
..|..++..+.|. ...|++++.|+.|++|.-..+ +.+. .-..|...|+++.|.|. ...|++|+.||.|++
T Consensus 230 ~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~ 307 (312)
T KOG0645|consen 230 GMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNF 307 (312)
T ss_pred hhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEE
Confidence 1377889999998 448999999999999976542 1111 22468899999999995 789999999999999
Q ss_pred EEcC
Q 004214 533 WHDS 536 (768)
Q Consensus 533 w~~~ 536 (768)
|.+.
T Consensus 308 W~l~ 311 (312)
T KOG0645|consen 308 WELE 311 (312)
T ss_pred EEec
Confidence 9864
No 47
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.6e-33 Score=286.29 Aligned_cols=295 Identities=24% Similarity=0.491 Sum_probs=249.4
Q ss_pred EEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004214 26 FKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRD 105 (768)
Q Consensus 26 l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~~ 105 (768)
|...+..|..++|||. +.+++++-..|.|.+||..-+.++..|..|.++|..++|+|++..++|||.|..|+||+..+
T Consensus 5 fEskSsRvKglsFHP~--rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~ 82 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPK--RPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKT 82 (1202)
T ss_pred hhcccccccceecCCC--CCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccc
Confidence 4456778999999994 55699999999999999999999999999999999999999999999999999999998876
Q ss_pred CeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeeccc
Q 004214 106 YSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFE 185 (768)
Q Consensus 106 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~ 185 (768)
.+|+.
T Consensus 83 rrclf--------------------------------------------------------------------------- 87 (1202)
T KOG0292|consen 83 RRCLF--------------------------------------------------------------------------- 87 (1202)
T ss_pred ceehh---------------------------------------------------------------------------
Confidence 55433
Q ss_pred ccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEE
Q 004214 186 MDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQ 265 (768)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~ 265 (768)
T Consensus 88 -------------------------------------------------------------------------------- 87 (1202)
T KOG0292|consen 88 -------------------------------------------------------------------------------- 87 (1202)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEE
Q 004214 266 VYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVS 345 (768)
Q Consensus 266 i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s 345 (768)
++.+|-+.|..+. |.+.-.+ +++++.|.+|+||+..++.++..+.||...|.|..|+|... ++++
T Consensus 88 -----------tL~GHlDYVRt~~--FHheyPW-IlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptED-lIVS 152 (1202)
T KOG0292|consen 88 -----------TLLGHLDYVRTVF--FHHEYPW-ILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTED-LIVS 152 (1202)
T ss_pred -----------hhccccceeEEee--ccCCCce-EEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccc-eEEE
Confidence 3445555666553 4444454 99999999999999999999999999999999999999744 8999
Q ss_pred EeCCCeEEEEeCCCCCCCCcccc-------------------ccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEE
Q 004214 346 GSSDHTIKVWSFDGLSDDAEQPM-------------------NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACV 406 (768)
Q Consensus 346 ~~~dg~i~iwd~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i 406 (768)
+|-|.+|++||+.+.......+. ......++.+|...|+.++|+|.-.++++|+.|..|++
T Consensus 153 aSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKl 232 (1202)
T KOG0292|consen 153 ASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKL 232 (1202)
T ss_pred ecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeE
Confidence 99999999999976532221111 23345677899999999999999999999999999999
Q ss_pred EeCCCCc--eEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeC
Q 004214 407 WRLPDLV--SVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGA 484 (768)
Q Consensus 407 ~d~~~~~--~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 484 (768)
|.+..-+ .+-+.++|...|.++-|+|..+++++.++|++|+|||+...+.+++|+......+.++-+|..+++++|-.
T Consensus 233 WrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHD 312 (1202)
T KOG0292|consen 233 WRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHD 312 (1202)
T ss_pred EEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeecC
Confidence 9987554 45678899999999999999999999999999999999999999999877888888999999888877765
Q ss_pred CCcEEEEEC
Q 004214 485 DGLVKLWTV 493 (768)
Q Consensus 485 dg~i~iwd~ 493 (768)
.| +.||.+
T Consensus 313 sG-m~VFkl 320 (1202)
T KOG0292|consen 313 SG-MIVFKL 320 (1202)
T ss_pred Cc-eEEEEE
Confidence 55 444444
No 48
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=1.3e-32 Score=278.90 Aligned_cols=286 Identities=34% Similarity=0.572 Sum_probs=257.9
Q ss_pred eecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEe
Q 004214 234 RLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWD 313 (768)
Q Consensus 234 ~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd 313 (768)
.+.+|.++|.+++|++ +++++++++.+|.+.+|+..++.....+..|...+..+. +.+++.. +++++.+|.|++|+
T Consensus 4 ~~~~h~~~i~~~~~~~-~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~-l~~~~~~~~i~i~~ 79 (289)
T cd00200 4 TLKGHTGGVTCVAFSP-DGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVA--ASADGTY-LASGSSDKTIRLWD 79 (289)
T ss_pred HhcccCCCEEEEEEcC-CCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEE--ECCCCCE-EEEEcCCCeEEEEE
Confidence 4557889999999986 578999999999999999999988888899999987776 6666655 99999999999999
Q ss_pred CCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCC
Q 004214 314 SESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDS 393 (768)
Q Consensus 314 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 393 (768)
+.+++....+..|...+.++.|+|++ .++++++.+|.+.+||+... ........|...+.+++|+|++.
T Consensus 80 ~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~----------~~~~~~~~~~~~i~~~~~~~~~~ 148 (289)
T cd00200 80 LETGECVRTLTGHTSYVSSVAFSPDG-RILSSSSRDKTIKVWDVETG----------KCLTTLRGHTDWVNSVAFSPDGT 148 (289)
T ss_pred cCcccceEEEeccCCcEEEEEEcCCC-CEEEEecCCCeEEEEECCCc----------EEEEEeccCCCcEEEEEEcCcCC
Confidence 99988888888999999999999984 47888888999999999732 23444557888999999999999
Q ss_pred EEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEE
Q 004214 394 LVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFL 473 (768)
Q Consensus 394 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s 473 (768)
++++++.||.|++||+.+++....+..|...+.+++|+|+++.+++++.|+.|++||+..++.+..+..|...+.++.|+
T Consensus 149 ~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~ 228 (289)
T cd00200 149 FVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFS 228 (289)
T ss_pred EEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEc
Confidence 99998889999999999999999999999999999999999999999999999999999999999998899999999999
Q ss_pred eCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004214 474 TRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 534 (768)
Q Consensus 474 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~ 534 (768)
|++.++++++.||.|++|++.+++++..+..|...|.+++|+|++.+|++++.||.+++|+
T Consensus 229 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 229 PDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred CCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 9988999888899999999999999999999999999999999999999999999999995
No 49
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.1e-34 Score=268.87 Aligned_cols=292 Identities=22% Similarity=0.335 Sum_probs=256.0
Q ss_pred EEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCC---eeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEE
Q 004214 23 THYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK---KCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVN 99 (768)
Q Consensus 23 ~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~---~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~ 99 (768)
.+.+..|.+.|.-+.||++|++ |||++.|.+..||.+..- +..+++.+|..+|.-+.||||.+||++||.|..+.
T Consensus 217 ~qil~~htdEVWfl~FS~nGky--LAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~ 294 (519)
T KOG0293|consen 217 WQILQDHTDEVWFLQFSHNGKY--LASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLS 294 (519)
T ss_pred hhhHhhCCCcEEEEEEcCCCee--EeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHhee
Confidence 4677889999999999999998 999999999999998543 45788999999999999999999999999999999
Q ss_pred EEECCCCeeeeeeecc--eeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecC
Q 004214 100 LWDLRDYSCKLTVPTY--EMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKS 177 (768)
Q Consensus 100 vWd~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~ 177 (768)
+||+.+|.+...++.. ..+.+.+|.|++. .+++|+.|+.+..||+++.....-..
T Consensus 295 lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~-----------------------~~V~Gs~dr~i~~wdlDgn~~~~W~g 351 (519)
T KOG0293|consen 295 LWDVDTGDLRHLYPSGLGFSVSSCAWCPDGF-----------------------RFVTGSPDRTIIMWDLDGNILGNWEG 351 (519)
T ss_pred eccCCcchhhhhcccCcCCCcceeEEccCCc-----------------------eeEecCCCCcEEEecCCcchhhcccc
Confidence 9999999999888776 5688999999987 89999999999999999874322211
Q ss_pred CceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEE
Q 004214 178 SDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAV 257 (768)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~ 257 (768)
. ....+..++..+++..+++++.|..+.+|+...... +.+.....+|++...+ .++.++++
T Consensus 352 v----------r~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~d--------r~lise~~~its~~iS-~d~k~~Lv 412 (519)
T KOG0293|consen 352 V----------RDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVD--------RGLISEEQPITSFSIS-KDGKLALV 412 (519)
T ss_pred c----------ccceeEEEEEcCCCcEEEEEecccceeeechhhhhh--------hccccccCceeEEEEc-CCCcEEEE
Confidence 1 114567788999999999999999999998765432 2245556788888887 47888889
Q ss_pred EeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEec
Q 004214 258 ATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSK 337 (768)
Q Consensus 258 ~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~ 337 (768)
.-.+..+++||++....++.+.||...-.-+..||-..+..++++|+.|+.|+||+..+++++..+.||...|.+++|+|
T Consensus 413 nL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP 492 (519)
T KOG0293|consen 413 NLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNP 492 (519)
T ss_pred EcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCC
Confidence 99999999999999999999999999888888888887777899999999999999999999999999999999999999
Q ss_pred CCCcEEEEEeCCCeEEEEeCC
Q 004214 338 KLQNFLVSGSSDHTIKVWSFD 358 (768)
Q Consensus 338 ~~~~~l~s~~~dg~i~iwd~~ 358 (768)
..+.++++++.||+|+||...
T Consensus 493 ~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 493 ADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred CCHHHhhccCCCCeEEEecCC
Confidence 999999999999999999765
No 50
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=2.7e-31 Score=255.49 Aligned_cols=419 Identities=17% Similarity=0.264 Sum_probs=307.8
Q ss_pred cEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCC--------cEEEEECCCCeeEEEecCccceeEEEEE
Q 004214 11 KVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDA--------TVRVWDLLAKKCVATLDKHFSRVTSMAI 82 (768)
Q Consensus 11 ~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg--------~I~iWd~~~~~~~~~l~~h~~~V~~l~f 82 (768)
.+.+++++... ++.+.||+..|.||+.+||.-. +++|-.-| .|+|||..+-..+..+......|++++|
T Consensus 86 V~Vl~n~ee~~-Qr~y~GH~ddikc~~vHPdri~--vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaF 162 (626)
T KOG2106|consen 86 VGVLYNWEERS-QRHYLGHNDDIKCMAVHPDRIR--VATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAF 162 (626)
T ss_pred EEEEEeehhhh-cccccCCCCceEEEeecCCcee--eccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeee
Confidence 44555554332 4566789999999999997554 88775544 5999999888888888877788999999
Q ss_pred cC--CCCEEEEE--eCCCeEEEEECCCCeeeeeeecce-eEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEee
Q 004214 83 TS--DGSTLISA--GRDKVVNLWDLRDYSCKLTVPTYE-MVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVG 157 (768)
Q Consensus 83 s~--d~~~L~s~--~~dg~i~vWd~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (768)
|+ .|.+|... +.+..+.|||++.+.........+ .+....|.|.+. .++...
T Consensus 163 sk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~-----------------------nliit~ 219 (626)
T KOG2106|consen 163 SKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDP-----------------------NLIITC 219 (626)
T ss_pred cccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCC-----------------------cEEEEe
Confidence 97 35555554 456789999998876655544332 234444554443 344444
Q ss_pred CCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecc
Q 004214 158 ERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVG 237 (768)
Q Consensus 158 ~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~ 237 (768)
..|.+.+|+++++.+.... - . --..
T Consensus 220 Gk~H~~Fw~~~~~~l~k~~----------------------------------------------------~-~--fek~ 244 (626)
T KOG2106|consen 220 GKGHLYFWTLRGGSLVKRQ----------------------------------------------------G-I--FEKR 244 (626)
T ss_pred CCceEEEEEccCCceEEEe----------------------------------------------------e-c--cccc
Confidence 4455555555444222100 0 0 0001
Q ss_pred cCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCc
Q 004214 238 YNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR 317 (768)
Q Consensus 238 ~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 317 (768)
...-|.+++|.+. .-+++|.++|.|.||+..+.+..+....|.+.|.++. ...++. |++|++|..|..||-. -
T Consensus 245 ekk~Vl~v~F~en--gdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~--~lr~Gt--llSGgKDRki~~Wd~~-y 317 (626)
T KOG2106|consen 245 EKKFVLCVTFLEN--GDVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLC--MLRDGT--LLSGGKDRKIILWDDN-Y 317 (626)
T ss_pred cceEEEEEEEcCC--CCEEeecCCceEEEEeCCCceEEeEeeecCCceEEEE--EecCcc--EeecCccceEEecccc-c
Confidence 1246889999753 3688999999999999999888888789999999996 555553 6779999999999932 2
Q ss_pred eEEE--eeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEE
Q 004214 318 CCVG--VGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLV 395 (768)
Q Consensus 318 ~~~~--~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 395 (768)
+.++ .+....++|..++-... . ++.|...+.|..=.+... ......+|......++.+|+...+
T Consensus 318 ~k~r~~elPe~~G~iRtv~e~~~--d-i~vGTtrN~iL~Gt~~~~-----------f~~~v~gh~delwgla~hps~~q~ 383 (626)
T KOG2106|consen 318 RKLRETELPEQFGPIRTVAEGKG--D-ILVGTTRNFILQGTLENG-----------FTLTVQGHGDELWGLATHPSKNQL 383 (626)
T ss_pred cccccccCchhcCCeeEEecCCC--c-EEEeeccceEEEeeecCC-----------ceEEEEecccceeeEEcCCChhhe
Confidence 2222 23445677887765433 2 777777777766555432 455668899999999999999999
Q ss_pred EEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeC
Q 004214 396 CTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTR 475 (768)
Q Consensus 396 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~ 475 (768)
++++.|+.+++|+ ..++..+.. -..++.|++|+|.| .+|.|...|...+.|.++...+..-.. ..+++.++|+|+
T Consensus 384 ~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~ 458 (626)
T KOG2106|consen 384 LTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPD 458 (626)
T ss_pred eeccCcceEEEcc--CCceeEEEE-ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCC
Confidence 9999999999999 444544433 56789999999999 999999999999999998666655554 899999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCC-eEEEEec-cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 004214 476 GAQIVSCGADGLVKLWTVRTG-ECIATYD-KHEDKIWALAVGKKTEMFATGGSDALVNLWHDS 536 (768)
Q Consensus 476 ~~~l~s~~~dg~i~iwd~~~~-~~~~~~~-~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~ 536 (768)
|.+||.|+.|+.|+||.+..+ ....... -+..+|+.+.||+|+++|.+-+.|-.|..|...
T Consensus 459 G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~ 521 (626)
T KOG2106|consen 459 GAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPS 521 (626)
T ss_pred CCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccc
Confidence 999999999999999998754 3333322 244899999999999999999999999999543
No 51
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=1.7e-32 Score=278.03 Aligned_cols=288 Identities=35% Similarity=0.632 Sum_probs=248.8
Q ss_pred EEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 004214 23 THYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWD 102 (768)
Q Consensus 23 ~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd 102 (768)
++.+++|.+.|++++|+|+++. +++++.||.|++|++.+++....+..|...+..+.|+|++++|++++.+|.|++||
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~~--l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~ 79 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGKL--LATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWD 79 (289)
T ss_pred chHhcccCCCEEEEEEcCCCCE--EEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEE
Confidence 3567899999999999999877 99999999999999999988889999999999999999999999999999999999
Q ss_pred CCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceee
Q 004214 103 LRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTI 182 (768)
Q Consensus 103 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~ 182 (768)
+.+++..
T Consensus 80 ~~~~~~~------------------------------------------------------------------------- 86 (289)
T cd00200 80 LETGECV------------------------------------------------------------------------- 86 (289)
T ss_pred cCcccce-------------------------------------------------------------------------
Confidence 8653211
Q ss_pred cccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCC
Q 004214 183 SFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIE 262 (768)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~ 262 (768)
T Consensus 87 -------------------------------------------------------------------------------- 86 (289)
T cd00200 87 -------------------------------------------------------------------------------- 86 (289)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcE
Q 004214 263 QVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNF 342 (768)
Q Consensus 263 ~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 342 (768)
..+..|...+.++. +.+++ .++++++.+|.|.+||+.+++....+..|...+.+++|+|++. +
T Consensus 87 -------------~~~~~~~~~i~~~~--~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~ 149 (289)
T cd00200 87 -------------RTLTGHTSYVSSVA--FSPDG-RILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGT-F 149 (289)
T ss_pred -------------EEEeccCCcEEEEE--EcCCC-CEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCC-E
Confidence 01223344555554 44443 3477777799999999999998888889999999999999844 7
Q ss_pred EEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccC
Q 004214 343 LVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHK 422 (768)
Q Consensus 343 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 422 (768)
+++++.++.|++||+... ........|...+.+++|+|+++.+++++.|+.+++||+.+++.+..+..|.
T Consensus 150 l~~~~~~~~i~i~d~~~~----------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~ 219 (289)
T cd00200 150 VASSSQDGTIKLWDLRTG----------KCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHE 219 (289)
T ss_pred EEEEcCCCcEEEEEcccc----------ccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcC
Confidence 777777999999999733 2344455778899999999999999999999999999999999998888899
Q ss_pred CCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEE
Q 004214 423 RGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWT 492 (768)
Q Consensus 423 ~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd 492 (768)
.++.+++|+|++.++++++.||.|++||+.++++...+.+|...+.+++|+|++++|++++.||.|++|+
T Consensus 220 ~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 220 NGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred CceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 9999999999999999988899999999999999999999999999999999999999999999999996
No 52
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.6e-32 Score=274.94 Aligned_cols=323 Identities=16% Similarity=0.285 Sum_probs=257.9
Q ss_pred EEEeecCCCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEE
Q 004214 2 FALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMA 81 (768)
Q Consensus 2 ~latg~~dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~ 81 (768)
++.++-..|.|.+||..=+.+++.|.+|.++|..++|||++.. ++||++|..|+||+..+.+|+.+|.||-.-|..+.
T Consensus 23 wILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qpl--FVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~ 100 (1202)
T KOG0292|consen 23 WILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPL--FVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVF 100 (1202)
T ss_pred EEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCe--EEecCCccEEEEEecccceehhhhccccceeEEee
Confidence 5778888999999999999999999999999999999997655 99999999999999999999999999999999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccee-EeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCc
Q 004214 82 ITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEM-VEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERG 160 (768)
Q Consensus 82 fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 160 (768)
|++.-.+++|+|.|.+|+||++.+++++..+.++.. +-+..|.|... .+++++-|-
T Consensus 101 FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptED-----------------------lIVSaSLDQ 157 (1202)
T KOG0292|consen 101 FHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTED-----------------------LIVSASLDQ 157 (1202)
T ss_pred ccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccc-----------------------eEEEecccc
Confidence 999999999999999999999999999999987765 78888888665 899999999
Q ss_pred EEEEEEcCCceeeeecCC-------------------ceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeecc
Q 004214 161 IVRMWNADSACLYEQKSS-------------------DVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVE 221 (768)
Q Consensus 161 ~i~iwd~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~ 221 (768)
+||+||+.+-........ +.........+.+++..++|.|.-..+++++.|..+++|....
T Consensus 158 TVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmne 237 (1202)
T KOG0292|consen 158 TVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNE 237 (1202)
T ss_pred eEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEecc
Confidence 999999976622211111 2334455678889999999999999999999999999999876
Q ss_pred CcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEE
Q 004214 222 VPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIV 301 (768)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~ 301 (768)
. .........||.+.|.++.|.| ..+++++.+.|+.|++||+.....+.++....+...+++ ..|..+ +++
T Consensus 238 t-----KaWEvDtcrgH~nnVssvlfhp-~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~la--ahP~lN-LfA 308 (1202)
T KOG0292|consen 238 T-----KAWEVDTCRGHYNNVSSVLFHP-HQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILA--AHPELN-LFA 308 (1202)
T ss_pred c-----cceeehhhhcccCCcceEEecC-ccceeEecCCCccEEEEecccccceeeeeccCCeEEEEE--ecCCcc-eee
Confidence 5 2344567889999999999985 677999999999999999999999999988888888886 555444 244
Q ss_pred EEeCCCeEEEEeCCCce----------------EEE-------------eeec---ccCcEEEEEEecCCCcEEEEEeC-
Q 004214 302 TGSKDNSVRLWDSESRC----------------CVG-------------VGTG---HMGAVGAVAFSKKLQNFLVSGSS- 348 (768)
Q Consensus 302 ~~~~dg~i~iwd~~~~~----------------~~~-------------~~~~---~~~~v~~~~~~~~~~~~l~s~~~- 348 (768)
+ +.|+-+.+|.++... .+. .+.. ...++.++.++|.....+++...
T Consensus 309 A-gHDsGm~VFkleRErpa~~v~~n~LfYvkd~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~ 387 (1202)
T KOG0292|consen 309 A-GHDSGMIVFKLERERPAYAVNGNGLFYVKDRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLD 387 (1202)
T ss_pred e-ecCCceEEEEEcccCceEEEcCCEEEEEccceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEEeccC
Confidence 4 445555566544211 111 1111 12567788888876645554433
Q ss_pred CCeEEEEeCCC
Q 004214 349 DHTIKVWSFDG 359 (768)
Q Consensus 349 dg~i~iwd~~~ 359 (768)
.|.-.++.+..
T Consensus 388 n~~y~L~~ipk 398 (1202)
T KOG0292|consen 388 NGEYELVQIPK 398 (1202)
T ss_pred CCeEEEEEecC
Confidence 45555565543
No 53
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5e-33 Score=241.63 Aligned_cols=284 Identities=19% Similarity=0.287 Sum_probs=250.0
Q ss_pred eeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEE
Q 004214 233 KRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLW 312 (768)
Q Consensus 233 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iw 312 (768)
..+.++.+.|..+.|+. ++++.+++++|.+|++|+...+.+++++.+|...|..++ ...++.. +++|+.|..+.+|
T Consensus 11 ~~l~~~qgaV~avryN~-dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~--~s~Dnsk-f~s~GgDk~v~vw 86 (307)
T KOG0316|consen 11 SILDCAQGAVRAVRYNV-DGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAA--LSSDNSK-FASCGGDKAVQVW 86 (307)
T ss_pred eeecccccceEEEEEcc-CCCEEEEcCCCceEEeecccccceeeeecCCCceeeecc--ccccccc-cccCCCCceEEEE
Confidence 45667889999999984 889999999999999999999999999999999999987 5566665 9999999999999
Q ss_pred eCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCC
Q 004214 313 DSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND 392 (768)
Q Consensus 313 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 392 (768)
|+.+|+..+.+.+|.+.|..+.|+.+.. .+++|+.|.++++||.+.. ...+.+++......|.++.++ +
T Consensus 87 DV~TGkv~Rr~rgH~aqVNtV~fNeesS-Vv~SgsfD~s~r~wDCRS~--------s~ePiQildea~D~V~Si~v~--~ 155 (307)
T KOG0316|consen 87 DVNTGKVDRRFRGHLAQVNTVRFNEESS-VVASGSFDSSVRLWDCRSR--------SFEPIQILDEAKDGVSSIDVA--E 155 (307)
T ss_pred EcccCeeeeecccccceeeEEEecCcce-EEEeccccceeEEEEcccC--------CCCccchhhhhcCceeEEEec--c
Confidence 9999999999999999999999999854 8999999999999999865 444566666677888888875 6
Q ss_pred CEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcE--EEE
Q 004214 393 SLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSV--LRA 470 (768)
Q Consensus 393 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v--~~~ 470 (768)
..|++|+.||+++.||++.+....-.- ..||+|++|+++++..++++.|+++++.|-.+|++++.+.||...- ..+
T Consensus 156 heIvaGS~DGtvRtydiR~G~l~sDy~--g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc 233 (307)
T KOG0316|consen 156 HEIVAGSVDGTVRTYDIRKGTLSSDYF--GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDC 233 (307)
T ss_pred cEEEeeccCCcEEEEEeecceeehhhc--CCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeee
Confidence 789999999999999999998776554 4589999999999999999999999999999999999999998754 456
Q ss_pred EEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCc-EEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004214 471 SFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDK-IWALAVGKKTEMFATGGSDALVNLWH 534 (768)
Q Consensus 471 ~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~l~~s~~~~~l~s~~~dg~v~vw~ 534 (768)
+++.....+++|++||.|++||+.....+..+..|... |.+++++|.-..|++++..+ +..|.
T Consensus 234 ~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~~-~~~~~ 297 (307)
T KOG0316|consen 234 CLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATGHG-DLFWY 297 (307)
T ss_pred eecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecCCc-eecee
Confidence 67777889999999999999999999999999988877 89999999888787776444 56664
No 54
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.2e-32 Score=291.06 Aligned_cols=292 Identities=33% Similarity=0.533 Sum_probs=253.9
Q ss_pred EEEEcC-CCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCe--eEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEE
Q 004214 24 HYFKGH-KGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK--CVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNL 100 (768)
Q Consensus 24 ~~l~gh-~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~--~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~v 100 (768)
..+.+| ...|+++.|+|+|+. +++++.|+.+++|++.+++ ....+.+|...|.+++|+|+++++++++.|++|++
T Consensus 152 ~~~~~~~~~sv~~~~fs~~g~~--l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiri 229 (456)
T KOG0266|consen 152 QTLAGHECPSVTCVDFSPDGRA--LAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRI 229 (456)
T ss_pred eeecccccCceEEEEEcCCCCe--EEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEE
Confidence 444444 889999999999998 9999999999999998888 78888999999999999999999999999999999
Q ss_pred EECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCce
Q 004214 101 WDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDV 180 (768)
Q Consensus 101 Wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~ 180 (768)
||+...
T Consensus 230 wd~~~~-------------------------------------------------------------------------- 235 (456)
T KOG0266|consen 230 WDLKDD-------------------------------------------------------------------------- 235 (456)
T ss_pred eeccCC--------------------------------------------------------------------------
Confidence 998321
Q ss_pred eecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeC
Q 004214 181 TISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATN 260 (768)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~ 260 (768)
T Consensus 236 -------------------------------------------------------------------------------- 235 (456)
T KOG0266|consen 236 -------------------------------------------------------------------------------- 235 (456)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCC
Q 004214 261 IEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQ 340 (768)
Q Consensus 261 ~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 340 (768)
+..++++.+|...|++++ +.+.+ .++++|+.|++|++||+.++++...+.+|.+.|++++|++++.
T Consensus 236 -----------~~~~~~l~gH~~~v~~~~--f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~ 301 (456)
T KOG0266|consen 236 -----------GRNLKTLKGHSTYVTSVA--FSPDG-NLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGN 301 (456)
T ss_pred -----------CeEEEEecCCCCceEEEE--ecCCC-CEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCC
Confidence 122336667888888887 77888 5699999999999999999999999999999999999999976
Q ss_pred cEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCC--CeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEE
Q 004214 341 NFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGK--DINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTF 418 (768)
Q Consensus 341 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 418 (768)
++++++.|+.|++||+..+... .......+.. .++++.|+|++.++++++.|+.+++||+..+.....+
T Consensus 302 -~l~s~s~d~~i~vwd~~~~~~~--------~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~ 372 (456)
T KOG0266|consen 302 -LLVSASYDGTIRVWDLETGSKL--------CLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTY 372 (456)
T ss_pred -EEEEcCCCccEEEEECCCCcee--------eeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeee
Confidence 7899999999999999865311 1223333333 5999999999999999999999999999999999999
Q ss_pred eccCCC---eEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecC-CCcEEEEEEEeCCCEEEEEe--CCCcEEEEE
Q 004214 419 RGHKRG---IWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGH-TSSVLRASFLTRGAQIVSCG--ADGLVKLWT 492 (768)
Q Consensus 419 ~~~~~~---v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~s~~--~dg~i~iwd 492 (768)
.+|... +.+...++.+.++++|+.|+.|++||+.++..+..+.+| ...+..+.++|..+++++++ .|+.+++|.
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~ 452 (456)
T KOG0266|consen 373 TGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWK 452 (456)
T ss_pred cccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEec
Confidence 998875 444556788999999999999999999999999999999 89999999999999999998 688999997
Q ss_pred CC
Q 004214 493 VR 494 (768)
Q Consensus 493 ~~ 494 (768)
..
T Consensus 453 ~~ 454 (456)
T KOG0266|consen 453 YD 454 (456)
T ss_pred CC
Confidence 53
No 55
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=6.5e-32 Score=308.35 Aligned_cols=312 Identities=17% Similarity=0.263 Sum_probs=253.8
Q ss_pred CCcEEEEECCCCeeEEEe-----cCccceeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCC
Q 004214 53 DATVRVWDLLAKKCVATL-----DKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPG 127 (768)
Q Consensus 53 dg~I~iWd~~~~~~~~~l-----~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~ 127 (768)
+|.+++|+..+.+....+ ..|.+.|.+++|+|+|++|+++|.|+.|++|++...... +
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~-----------------~ 519 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKD-----------------G 519 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccc-----------------c
Confidence 678999998876665443 358999999999999999999999999999997541100 0
Q ss_pred CCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEE
Q 004214 128 SAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLC 207 (768)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 207 (768)
...
T Consensus 520 ~~~----------------------------------------------------------------------------- 522 (793)
T PLN00181 520 RDI----------------------------------------------------------------------------- 522 (793)
T ss_pred ccc-----------------------------------------------------------------------------
Confidence 000
Q ss_pred EEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEE
Q 004214 208 VTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLC 287 (768)
Q Consensus 208 ~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~ 287 (768)
.. ..... .+...+.+++|.+..+.++++++.||.|++||+.+++.+..+.+|...|.+
T Consensus 523 --------------------~~-~~~~~-~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~ 580 (793)
T PLN00181 523 --------------------HY-PVVEL-ASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWS 580 (793)
T ss_pred --------------------cc-ceEEe-cccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEE
Confidence 00 00000 113457788888878889999999999999999999999999999999999
Q ss_pred EeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccc
Q 004214 288 LDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQP 367 (768)
Q Consensus 288 l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 367 (768)
++ +.+.++.+|++|+.||.|++||+.++..+..+..+ ..+.++.|++....++++|+.||.|++||++...
T Consensus 581 l~--~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~------ 651 (793)
T PLN00181 581 ID--YSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPK------ 651 (793)
T ss_pred EE--EcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCC------
Confidence 98 76655556999999999999999999888887755 6799999976556689999999999999997431
Q ss_pred cccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC------CceEEEEeccCCCeEEEEEccCCCEEEEee
Q 004214 368 MNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPD------LVSVVTFRGHKRGIWSVEFSPVDQVVITAS 441 (768)
Q Consensus 368 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~------~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~ 441 (768)
.......+|...|.++.|. ++.++++++.|++|++||+.. ..++..+.+|...+.+++|+|++.+|++|+
T Consensus 652 ---~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs 727 (793)
T PLN00181 652 ---LPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGS 727 (793)
T ss_pred ---ccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEe
Confidence 1234456899999999997 678999999999999999974 356788999999999999999999999999
Q ss_pred CCCcEEEEeCCCCceeEEe-------------ecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEEC
Q 004214 442 GDKTIKIWSISDGSCLKTF-------------EGHTSSVLRASFLTRGAQIVSCGADGLVKLWTV 493 (768)
Q Consensus 442 ~d~~i~iwd~~~~~~~~~~-------------~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 493 (768)
.|+.|++|+.....++..+ ..|...|.+++|+|++..|++|+.||.|+||++
T Consensus 728 ~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 728 ETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred CCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 9999999998766544322 234567999999999999999999999999986
No 56
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.3e-32 Score=290.90 Aligned_cols=283 Identities=27% Similarity=0.482 Sum_probs=256.7
Q ss_pred CCceeEEEEecCCCCEEEEEeCCCcEEEEECCCce--eeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeC-C
Q 004214 239 NEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMS--CSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDS-E 315 (768)
Q Consensus 239 ~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~--~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~-~ 315 (768)
...+.++.|++ ++..++.++.++.+++|+..+.. ....+.+|...|.+++ +++++.. +++++.|++|++||+ .
T Consensus 159 ~~sv~~~~fs~-~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~--fs~d~~~-l~s~s~D~tiriwd~~~ 234 (456)
T KOG0266|consen 159 CPSVTCVDFSP-DGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVA--FSPDGSY-LLSGSDDKTLRIWDLKD 234 (456)
T ss_pred cCceEEEEEcC-CCCeEEEccCCCcEEEeecccccchhhccccccccceeeeE--ECCCCcE-EEEecCCceEEEeeccC
Confidence 66788888885 66679999999999999998877 7777899999999998 7777775 999999999999999 5
Q ss_pred CceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEE
Q 004214 316 SRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLV 395 (768)
Q Consensus 316 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 395 (768)
.+..+.++.+|...|++++|+|++ +++++|+.|++|++||++. ......+.+|...|++++|++++++|
T Consensus 235 ~~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~----------~~~~~~l~~hs~~is~~~f~~d~~~l 303 (456)
T KOG0266|consen 235 DGRNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRT----------GECVRKLKGHSDGISGLAFSPDGNLL 303 (456)
T ss_pred CCeEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccC----------CeEEEeeeccCCceEEEEECCCCCEE
Confidence 668999999999999999999998 6999999999999999984 45788889999999999999999999
Q ss_pred EEEeCCCcEEEEeCCCCc--eEEEEeccCCC--eEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcE---E
Q 004214 396 CTGSQDRTACVWRLPDLV--SVVTFRGHKRG--IWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSV---L 468 (768)
Q Consensus 396 ~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~--v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v---~ 468 (768)
++++.|+.|++||+.++. +...+.++..+ ++++.|+|++.++++++.|+.+++||+..+.++..+.+|...+ .
T Consensus 304 ~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~ 383 (456)
T KOG0266|consen 304 VSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIF 383 (456)
T ss_pred EEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEe
Confidence 999999999999999998 56777776665 9999999999999999999999999999999999999998853 3
Q ss_pred EEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccC-CCcEEEEEEcCCCCEEEEEe--CCCcEEEEEcC
Q 004214 469 RASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKH-EDKIWALAVGKKTEMFATGG--SDALVNLWHDS 536 (768)
Q Consensus 469 ~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~l~~s~~~~~l~s~~--~dg~v~vw~~~ 536 (768)
+..+++.+.++++|+.|+.|++|++.++..+..+.+| ...+..++++|..+++++++ .|+.+++|...
T Consensus 384 ~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 384 SPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred cccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 4455778999999999999999999999999999999 89999999999999999998 79999999754
No 57
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=2.1e-31 Score=266.07 Aligned_cols=506 Identities=16% Similarity=0.253 Sum_probs=364.2
Q ss_pred EEEeecCCCcEEEEECCCC--EEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCe--eEEEecCccc--
Q 004214 2 FALLEGADRKVLVWDVDGG--FCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK--CVATLDKHFS-- 75 (768)
Q Consensus 2 ~latg~~dg~i~vwd~~~~--~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~--~~~~l~~h~~-- 75 (768)
++++|+.||.|++|.+... .++..+.||...+.|+.=.+ . .....+.|+++.+||.+..+ +...+.-..+
T Consensus 71 ~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~~cv~a~~--~--~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ 146 (764)
T KOG1063|consen 71 EMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKECVCVVARS--S--VMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEA 146 (764)
T ss_pred eEEEccCCCcEEEEEEeehheEEEEeecCcceeEEEEEeee--e--EEEeeccCceEEEeecCCCceeeehheehhhhhH
Confidence 6899999999999999733 35567777666665554332 2 13333789999999996555 3333332222
Q ss_pred eeEEEEEcC-CCCEEE-EEeCCCeEEEEECCCCe--eeeeeecce-eEeeEEecCCCCCccccccccchhhhhcccCCcc
Q 004214 76 RVTSMAITS-DGSTLI-SAGRDKVVNLWDLRDYS--CKLTVPTYE-MVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLE 150 (768)
Q Consensus 76 ~V~~l~fs~-d~~~L~-s~~~dg~i~vWd~~~~~--~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (768)
-..|+++.| ++.+|. .++.+..|.++.-.+.+ .+..+..+. -+..+.|...+. ..
T Consensus 147 ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~--------------------~~ 206 (764)
T KOG1063|consen 147 IPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGG--------------------DD 206 (764)
T ss_pred hhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCC--------------------Cc
Confidence 334666667 445544 45566677777655433 334444443 366776665543 24
Q ss_pred eEEEEeeCCcEEEEEEcCCceeee----ecC------C-----------ceeecccccCcccceeEEEEccCCCceEEEE
Q 004214 151 IHFITVGERGIVRMWNADSACLYE----QKS------S-----------DVTISFEMDDSKRGFTAATVLPSNQGLLCVT 209 (768)
Q Consensus 151 ~~~~~~~~~g~i~iwd~~~~~~~~----~~~------~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 209 (768)
.++++++.|..||||.+.-+.... ... . ......-...+.+=+.++.+.|.+..|++++
T Consensus 207 ~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSAS 286 (764)
T KOG1063|consen 207 LLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSAS 286 (764)
T ss_pred EEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecc
Confidence 489999999999999875442111 000 0 0011112335556677888999999999999
Q ss_pred ecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCC---ceeeeeeeCCccceE
Q 004214 210 ADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSS---MSCSYVLAGHSEIVL 286 (768)
Q Consensus 210 ~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~---~~~~~~~~~~~~~v~ 286 (768)
.|.++.+|...................|.........|++ +++.+++-+..|..++|.... ......+.||.+.|.
T Consensus 287 aDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~-n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~ 365 (764)
T KOG1063|consen 287 ADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSP-NSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVK 365 (764)
T ss_pred cCcceEEEecCCccceEEEEEEeecccccccceeeEEEcC-CCCEEEEecccCcEEEEeccCccceeeccccccccccce
Confidence 9999999998876544444444444556666788888885 667888888889999998332 133445789999999
Q ss_pred EEeeeeecCCCEEEEEEeCCCeEEEEeCCCc----eEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCC--
Q 004214 287 CLDTCALSSGKILIVTGSKDNSVRLWDSESR----CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGL-- 360 (768)
Q Consensus 287 ~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-- 360 (768)
.++ +.|.|.. +++.+.|-+-|+|-.-.. -.+...+-|...++|+++-+. +..+++|.....+++|+.+..
T Consensus 366 dv~--W~psGef-lLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~-~~~FVSgAdEKVlRvF~aPk~fv 441 (764)
T KOG1063|consen 366 DVD--WDPSGEF-LLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNE-DLQFVSGADEKVLRVFEAPKSFV 441 (764)
T ss_pred eee--ecCCCCE-EEEeccccceeeecccccccceeeecccccccccceeeehccC-CceeeecccceeeeeecCcHHHH
Confidence 998 7788886 889999999999865421 233445568889999999885 446999999999999986521
Q ss_pred ------------CC-C-----------------C--------------ccc--------------------cccceeeEe
Q 004214 361 ------------SD-D-----------------A--------------EQP--------------------MNLKAKAVV 376 (768)
Q Consensus 361 ------------~~-~-----------------~--------------~~~--------------------~~~~~~~~~ 376 (768)
.. . . +.+ ........+
T Consensus 442 ~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KL 521 (764)
T KOG1063|consen 442 KSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKL 521 (764)
T ss_pred HHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHh
Confidence 00 0 0 000 001112234
Q ss_pred eccCCCeEEEEEccCCCEEEEEeCCC-----cEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeC
Q 004214 377 AAHGKDINSLAVAPNDSLVCTGSQDR-----TACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSI 451 (768)
Q Consensus 377 ~~~~~~i~~~~~s~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~ 451 (768)
.+|...|.+++.+|+++++|+++... .|++|+..+......+.+|.-.|+.++|||||++|++.+.|+++.+|..
T Consensus 522 YGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~ 601 (764)
T KOG1063|consen 522 YGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEV 601 (764)
T ss_pred ccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeee
Confidence 67999999999999999999998654 5999999999999999999999999999999999999999999999997
Q ss_pred CCCc----eeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCC--eEEEE--eccCCCcEEEEEEcCC-----C
Q 004214 452 SDGS----CLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTG--ECIAT--YDKHEDKIWALAVGKK-----T 518 (768)
Q Consensus 452 ~~~~----~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~--~~~~~--~~~~~~~v~~l~~s~~-----~ 518 (768)
.... .....+.|..-|.++.|+|++.+++|++.|.+|++|..... +.+.. ...+...|+++++.|- +
T Consensus 602 ~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~ 681 (764)
T KOG1063|consen 602 QEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKG 681 (764)
T ss_pred ecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeecccccccc
Confidence 5432 22336789999999999999999999999999999998877 44443 2348889999998772 3
Q ss_pred CEEEEEeCCCcEEEEEcC
Q 004214 519 EMFATGGSDALVNLWHDS 536 (768)
Q Consensus 519 ~~l~s~~~dg~v~vw~~~ 536 (768)
..+++|-..|.|.+|+..
T Consensus 682 ~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 682 DVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred ceEEEEecccEEEEEecc
Confidence 377889999999999965
No 58
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=7e-34 Score=272.56 Aligned_cols=291 Identities=20% Similarity=0.308 Sum_probs=256.6
Q ss_pred EEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCC-ceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCe
Q 004214 230 ILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSS-MSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNS 308 (768)
Q Consensus 230 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~-~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~ 308 (768)
.......||...|.++.|++....+|++++.|+.|+||++.. +.+++++.+|..+|..+. ++..+.. +++++.|+.
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~--~s~~g~~-fLS~sfD~~ 281 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDAS--FNNCGTS-FLSASFDRF 281 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhh--ccccCCe-eeeeeccee
Confidence 345678899999999999998999999999999999999876 899999999999999997 7777776 999999999
Q ss_pred EEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEE
Q 004214 309 VRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAV 388 (768)
Q Consensus 309 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 388 (768)
|++||+++|+++..+. ....++|+.|.|++.+.+++|+.|+.|+.||++.+ +....+..|-..|..+.|
T Consensus 282 lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~----------kvvqeYd~hLg~i~~i~F 350 (503)
T KOG0282|consen 282 LKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSG----------KVVQEYDRHLGAILDITF 350 (503)
T ss_pred eeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccch----------HHHHHHHhhhhheeeeEE
Confidence 9999999999998876 34578999999999889999999999999999954 355566778899999999
Q ss_pred ccCCCEEEEEeCCCcEEEEeCCCCceEEEEec-cCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCC---ceeEEeecCC
Q 004214 389 APNDSLVCTGSQDRTACVWRLPDLVSVVTFRG-HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG---SCLKTFEGHT 464 (768)
Q Consensus 389 s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~---~~~~~~~~~~ 464 (768)
-++|+.+++.+.|++++||+.+...++..... +.....++..+|+++++++-+.|+.|.+|.+... ..-+.|+||.
T Consensus 351 ~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~ 430 (503)
T KOG0282|consen 351 VDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHS 430 (503)
T ss_pred ccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhccee
Confidence 99999999999999999999988766654332 3345678999999999999999999999997543 3446677886
Q ss_pred C--cEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCC-CCEEEEEeCCCcEEEEE
Q 004214 465 S--SVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKK-TEMFATGGSDALVNLWH 534 (768)
Q Consensus 465 ~--~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~-~~~l~s~~~dg~v~vw~ 534 (768)
. --..+.|||||.+|++|+.||.+.+||.++-+.+..+.+|..++..+.|+|. ...+||+|-||.|++|+
T Consensus 431 vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 431 VAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred ccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 4 4567899999999999999999999999999999999999999999999995 56799999999999996
No 59
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=3.7e-32 Score=252.69 Aligned_cols=292 Identities=21% Similarity=0.360 Sum_probs=246.6
Q ss_pred ccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCC
Q 004214 237 GYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES 316 (768)
Q Consensus 237 ~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 316 (768)
.|++.|.++.-. +.++++|+.||.+++||.. |+....+.+|.+++..+++....+....|++++.|.++++|..+.
T Consensus 103 ~hdDWVSsv~~~---~~~IltgsYDg~~riWd~~-Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~ 178 (423)
T KOG0313|consen 103 LHDDWVSSVKGA---SKWILTGSYDGTSRIWDLK-GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNV 178 (423)
T ss_pred cchhhhhhhccc---CceEEEeecCCeeEEEecC-CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecC
Confidence 456666666653 6799999999999999965 677779999999999888665555556799999999999998876
Q ss_pred ceE----EEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCC---------------CccccccceeeEee
Q 004214 317 RCC----VGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDD---------------AEQPMNLKAKAVVA 377 (768)
Q Consensus 317 ~~~----~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---------------~~~~~~~~~~~~~~ 377 (768)
+.. +....||...|.++...+++. .+++|+.|.++++|+....... ........+...+.
T Consensus 179 ~~~~~~~~~~~~GHk~~V~sVsv~~sgt-r~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~ 257 (423)
T KOG0313|consen 179 GENKVKALKVCRGHKRSVDSVSVDSSGT-RFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLE 257 (423)
T ss_pred chhhhhHHhHhcccccceeEEEecCCCC-eEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEec
Confidence 643 233459999999999999976 7999999999999994322111 01222345677788
Q ss_pred ccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCc--
Q 004214 378 AHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGS-- 455 (768)
Q Consensus 378 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~-- 455 (768)
+|..+|.++.|++ ...+++++.|.+|+.||+.++....++. ....++|+.++|..++|++|+.|..+++||.+++.
T Consensus 258 GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~-~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs 335 (423)
T KOG0313|consen 258 GHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLT-TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGS 335 (423)
T ss_pred ccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeee-cCcceeEeecccccceeeecCCCCceeecCCCCCCCc
Confidence 9999999999998 6789999999999999999999988877 46789999999999999999999999999998763
Q ss_pred -eeEEeecCCCcEEEEEEEeCCC-EEEEEeCCCcEEEEECCCCe-EEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEE
Q 004214 456 -CLKTFEGHTSSVLRASFLTRGA-QIVSCGADGLVKLWTVRTGE-CIATYDKHEDKIWALAVGKKTEMFATGGSDALVNL 532 (768)
Q Consensus 456 -~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~v 532 (768)
...+|.+|.+.|.++.|+|... +|++|+.|+++++||+++.. ++..+.+|.+.|.++.|. ++..+++||.|..|++
T Consensus 336 ~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i 414 (423)
T KOG0313|consen 336 VVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRI 414 (423)
T ss_pred eeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEEE
Confidence 5578899999999999999655 67899999999999999988 999999999999999997 6779999999999999
Q ss_pred EEcC
Q 004214 533 WHDS 536 (768)
Q Consensus 533 w~~~ 536 (768)
+.-.
T Consensus 415 ~~~~ 418 (423)
T KOG0313|consen 415 FKGS 418 (423)
T ss_pred eccc
Confidence 8643
No 60
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=3.2e-33 Score=244.88 Aligned_cols=291 Identities=20% Similarity=0.329 Sum_probs=260.3
Q ss_pred eeecccCCceeEEEEec--CCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEE
Q 004214 233 KRLVGYNEEILDLKFLG--EEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVR 310 (768)
Q Consensus 233 ~~~~~~~~~i~~~~~~~--~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~ 310 (768)
....||..+|.+++|++ +++-+|++++.|+.-.+-+-.++.-+.++.+|.+.|.... ...+....++++.|-+-+
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~---l~~na~~aasaaadftak 84 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSAT---LNKNATRAASAAADFTAK 84 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeee---cCchhhhhhhhcccchhh
Confidence 45578999999999987 7888999999999999999999999999999999998874 334444588899999999
Q ss_pred EEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEcc
Q 004214 311 LWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP 390 (768)
Q Consensus 311 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 390 (768)
+||.-+|..+..+. |..-|.+++|+.+.. +|++|+.+..+++||++.... +...+.+|...|..+.|..
T Consensus 85 vw~a~tgdelhsf~-hkhivk~~af~~ds~-~lltgg~ekllrvfdln~p~A---------pp~E~~ghtg~Ir~v~wc~ 153 (334)
T KOG0278|consen 85 VWDAVTGDELHSFE-HKHIVKAVAFSQDSN-YLLTGGQEKLLRVFDLNRPKA---------PPKEISGHTGGIRTVLWCH 153 (334)
T ss_pred hhhhhhhhhhhhhh-hhheeeeEEecccch-hhhccchHHHhhhhhccCCCC---------CchhhcCCCCcceeEEEec
Confidence 99999998888875 889999999999955 799999999999999985432 3445678999999999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEE
Q 004214 391 NDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRA 470 (768)
Q Consensus 391 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~ 470 (768)
..+.|++++.|++|++||.+++..+.++. ...+|+++.++++|++|.++.. +.|.+||..+..+++.+. ....|.+.
T Consensus 154 eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia~g-ssV~Fwdaksf~~lKs~k-~P~nV~SA 230 (334)
T KOG0278|consen 154 EDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIAYG-SSVKFWDAKSFGLLKSYK-MPCNVESA 230 (334)
T ss_pred cCceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEecC-ceeEEeccccccceeecc-Cccccccc
Confidence 99999999999999999999999999988 6789999999999998888765 789999999999999887 55678999
Q ss_pred EEEeCCCEEEEEeCCCcEEEEECCCCeEEEEe-ccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCHHH
Q 004214 471 SFLTRGAQIVSCGADGLVKLWTVRTGECIATY-DKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAE 540 (768)
Q Consensus 471 ~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~~~ 540 (768)
.++|+...+++|+.|+.++.||..+|+.+..+ ++|.++|.|+.|+|+|...++|+.||+|++|....++.
T Consensus 231 SL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 231 SLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred cccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence 99999999999999999999999999999986 89999999999999999999999999999999877654
No 61
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=5.9e-31 Score=300.46 Aligned_cols=286 Identities=18% Similarity=0.254 Sum_probs=238.2
Q ss_pred eecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCce--------eeeeeeCCccceEEEeeeeecCCCEEEEEEeC
Q 004214 234 RLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMS--------CSYVLAGHSEIVLCLDTCALSSGKILIVTGSK 305 (768)
Q Consensus 234 ~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~--------~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~ 305 (768)
.+.+|.+.|.+++|++ ++.++++|+.|+.|++|+..... ....+. +...+.++. +.+..+.++++++.
T Consensus 478 ~~~~~~~~V~~i~fs~-dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~--~~~~~~~~las~~~ 553 (793)
T PLN00181 478 DLLNSSNLVCAIGFDR-DGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGIC--WNSYIKSQVASSNF 553 (793)
T ss_pred cccCCCCcEEEEEECC-CCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEE--eccCCCCEEEEEeC
Confidence 3456888999999985 77899999999999999975421 111222 345677776 55555556999999
Q ss_pred CCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEE
Q 004214 306 DNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINS 385 (768)
Q Consensus 306 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 385 (768)
||.|++||+.+++.+..+.+|.+.|++++|+|....+|++|+.||+|++||+.... ...... +...+.+
T Consensus 554 Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~----------~~~~~~-~~~~v~~ 622 (793)
T PLN00181 554 EGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV----------SIGTIK-TKANICC 622 (793)
T ss_pred CCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCc----------EEEEEe-cCCCeEE
Confidence 99999999999999999999999999999998545689999999999999997432 222333 3357899
Q ss_pred EEEc-cCCCEEEEEeCCCcEEEEeCCCCc-eEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCC------Ccee
Q 004214 386 LAVA-PNDSLVCTGSQDRTACVWRLPDLV-SVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISD------GSCL 457 (768)
Q Consensus 386 ~~~s-~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~------~~~~ 457 (768)
+.|+ +++.+|++|+.||.|++||+++.. .+..+.+|...|.++.|. ++.+|++++.|++|++||+.. +.++
T Consensus 623 v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l 701 (793)
T PLN00181 623 VQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPL 701 (793)
T ss_pred EEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcce
Confidence 9995 579999999999999999998765 567788999999999997 688999999999999999974 3678
Q ss_pred EEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEe-------------ccCCCcEEEEEEcCCCCEEEEE
Q 004214 458 KTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATY-------------DKHEDKIWALAVGKKTEMFATG 524 (768)
Q Consensus 458 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-------------~~~~~~v~~l~~s~~~~~l~s~ 524 (768)
..+.+|...+..++|+|++.+|++|+.||.|++|+.....++..+ ..|...|.+++|+|++..|++|
T Consensus 702 ~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~ 781 (793)
T PLN00181 702 HSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAA 781 (793)
T ss_pred EEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEe
Confidence 899999999999999999999999999999999998766544322 2345679999999999999999
Q ss_pred eCCCcEEEEEc
Q 004214 525 GSDALVNLWHD 535 (768)
Q Consensus 525 ~~dg~v~vw~~ 535 (768)
+.||.|+||++
T Consensus 782 ~~dG~I~i~~~ 792 (793)
T PLN00181 782 NSTGNIKILEM 792 (793)
T ss_pred cCCCcEEEEec
Confidence 99999999986
No 62
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4e-32 Score=254.71 Aligned_cols=291 Identities=21% Similarity=0.317 Sum_probs=246.9
Q ss_pred EEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCc---eeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCC
Q 004214 231 LSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSM---SCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDN 307 (768)
Q Consensus 231 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~---~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg 307 (768)
....+..|.++|.-+.|++ ++++||+++.|.+..+|.+... +...++.+|..+|..+. ++|++++ +++++.+.
T Consensus 216 t~qil~~htdEVWfl~FS~-nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~--wSPDdry-LlaCg~~e 291 (519)
T KOG0293|consen 216 TWQILQDHTDEVWFLQFSH-NGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIM--WSPDDRY-LLACGFDE 291 (519)
T ss_pred hhhhHhhCCCcEEEEEEcC-CCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEE--ECCCCCe-EEecCchH
Confidence 3455778899999999985 8999999999999999987654 34678899999999997 7787776 88888888
Q ss_pred eEEEEeCCCceEEEeee-cccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEE
Q 004214 308 SVRLWDSESRCCVGVGT-GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSL 386 (768)
Q Consensus 308 ~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 386 (768)
.+.+||..+|.....+. ++...+.+++|.|||. .+++|+.|+++..||+++.... .... .....|.++
T Consensus 292 ~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~-~~V~Gs~dr~i~~wdlDgn~~~-----~W~g-----vr~~~v~dl 360 (519)
T KOG0293|consen 292 VLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGF-RFVTGSPDRTIIMWDLDGNILG-----NWEG-----VRDPKVHDL 360 (519)
T ss_pred heeeccCCcchhhhhcccCcCCCcceeEEccCCc-eeEecCCCCcEEEecCCcchhh-----cccc-----cccceeEEE
Confidence 89999999998877665 3567899999999987 5999999999999999864211 1111 112458899
Q ss_pred EEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCc
Q 004214 387 AVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSS 466 (768)
Q Consensus 387 ~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~ 466 (768)
++.+||+++++.+.|..|++|+.++......+. ...+|+++++|.+++++++.-.+..+++||+.....++.+.||...
T Consensus 361 ait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~ 439 (519)
T KOG0293|consen 361 AITYDGKYVLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQG 439 (519)
T ss_pred EEcCCCcEEEEEecccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhccccc
Confidence 999999999999999999999998766554333 5678999999999999999999999999999999999999999753
Q ss_pred --EEEEEEEe-CCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCC-CCEEEEEeCCCcEEEEEcCC
Q 004214 467 --VLRASFLT-RGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKK-TEMFATGGSDALVNLWHDST 537 (768)
Q Consensus 467 --v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~-~~~l~s~~~dg~v~vw~~~~ 537 (768)
+..-+|-. +..++++|++|+.|+||+..+|+++..+.+|...|++++|+|. ..++|++|.||+|+||....
T Consensus 440 ~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 440 HFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred ceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 55556654 4579999999999999999999999999999999999999995 56899999999999998764
No 63
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.1e-31 Score=231.52 Aligned_cols=283 Identities=21% Similarity=0.306 Sum_probs=239.8
Q ss_pred EEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 004214 23 THYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWD 102 (768)
Q Consensus 23 ~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd 102 (768)
.+.+.+|+++|.++.|+-||++ .++++.|.+|++||...|.+++++.+|...|..++.+.|+..+++||.|..+.+||
T Consensus 10 ~~~l~~~qgaV~avryN~dGnY--~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwD 87 (307)
T KOG0316|consen 10 LSILDCAQGAVRAVRYNVDGNY--CLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWD 87 (307)
T ss_pred ceeecccccceEEEEEccCCCE--EEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEE
Confidence 5778899999999999999998 99999999999999999999999999999999999999999999999999888888
Q ss_pred CCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceee
Q 004214 103 LRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTI 182 (768)
Q Consensus 103 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~ 182 (768)
+.+|+...
T Consensus 88 V~TGkv~R------------------------------------------------------------------------ 95 (307)
T KOG0316|consen 88 VNTGKVDR------------------------------------------------------------------------ 95 (307)
T ss_pred cccCeeee------------------------------------------------------------------------
Confidence 87765332
Q ss_pred cccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCC
Q 004214 183 SFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIE 262 (768)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~ 262 (768)
T Consensus 96 -------------------------------------------------------------------------------- 95 (307)
T KOG0316|consen 96 -------------------------------------------------------------------------------- 95 (307)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCC--ceEEEeeecccCcEEEEEEecCCC
Q 004214 263 QVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES--RCCVGVGTGHMGAVGAVAFSKKLQ 340 (768)
Q Consensus 263 ~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~ 340 (768)
.+.+|...|..+. +. .....+++|+.|.++++||.++ .++++.+......|.++..+..
T Consensus 96 --------------r~rgH~aqVNtV~--fN-eesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~h-- 156 (307)
T KOG0316|consen 96 --------------RFRGHLAQVNTVR--FN-EESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEH-- 156 (307)
T ss_pred --------------ecccccceeeEEE--ec-CcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEeccc--
Confidence 3344555555553 33 3334599999999999999875 5678888888899999998754
Q ss_pred cEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEec
Q 004214 341 NFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG 420 (768)
Q Consensus 341 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 420 (768)
.+++|+.||+++.||++.+.. .......+|+++.|+++++..++++.|+++++.|-.+++.+..++|
T Consensus 157 -eIvaGS~DGtvRtydiR~G~l------------~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkG 223 (307)
T KOG0316|consen 157 -EIVAGSVDGTVRTYDIRKGTL------------SSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKG 223 (307)
T ss_pred -EEEeeccCCcEEEEEeeccee------------ehhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcc
Confidence 699999999999999986532 1233457899999999999999999999999999999999999999
Q ss_pred cCCCe--EEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCc-EEEEEEEeCCCEEEEEeCCCcEEEEE
Q 004214 421 HKRGI--WSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSS-VLRASFLTRGAQIVSCGADGLVKLWT 492 (768)
Q Consensus 421 ~~~~v--~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~s~~~dg~i~iwd 492 (768)
|...- ...+++.....+++|++||.|.+||+.+...+..+..|... ++++.+.|.-..|+++... .+..|-
T Consensus 224 hkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~-~~~~~~ 297 (307)
T KOG0316|consen 224 HKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATGH-GDLFWY 297 (307)
T ss_pred cccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecCC-ceecee
Confidence 98753 45567777899999999999999999999999999988887 8999999988777777643 455564
No 64
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2e-28 Score=244.69 Aligned_cols=487 Identities=14% Similarity=0.184 Sum_probs=352.3
Q ss_pred EEeecCCCcEEEEECCCCE-EEEEEEcCC-CcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEE
Q 004214 3 ALLEGADRKVLVWDVDGGF-CTHYFKGHK-GVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSM 80 (768)
Q Consensus 3 latg~~dg~i~vwd~~~~~-~~~~l~gh~-~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l 80 (768)
||.+-++|.|.+|++..+- +...+.||. ..|.+++|++.++ |++.+.+|.|.-||+.+++++..+....+.|+++
T Consensus 40 lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~R---LFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsi 116 (691)
T KOG2048|consen 40 LAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGR---LFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSI 116 (691)
T ss_pred eeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCe---EEeecCCceEEEEecccCceeEEecCCCcceeEE
Confidence 7889999999999997664 445677764 5899999996544 9999999999999999999999999999999999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCeeeeeeec---ceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEee
Q 004214 81 AITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPT---YEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVG 157 (768)
Q Consensus 81 ~fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (768)
+.+|.+..++.++.||.+...+...++....... ...+.++.|.|++. .+++|+
T Consensus 117 ai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~-----------------------~i~~Gs 173 (691)
T KOG2048|consen 117 AINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGT-----------------------KIAGGS 173 (691)
T ss_pred EeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCcc-----------------------EEEecc
Confidence 9999999999999999999999888887665543 34578888888875 799999
Q ss_pred CCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecc
Q 004214 158 ERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVG 237 (768)
Q Consensus 158 ~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~ 237 (768)
.||.|++||...+.......... .........+.....+-....++++.+.|.+.+|+..... +......
T Consensus 174 ~Dg~Iriwd~~~~~t~~~~~~~~---d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gT-------LiqS~~~ 243 (691)
T KOG2048|consen 174 IDGVIRIWDVKSGQTLHIITMQL---DRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGT-------LIQSHSC 243 (691)
T ss_pred cCceEEEEEcCCCceEEEeeecc---cccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcc-------hhhhhhh
Confidence 99999999999984332110000 0001111222333333478889999999999999987553 4456667
Q ss_pred cCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCcee----eeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEe
Q 004214 238 YNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSC----SYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWD 313 (768)
Q Consensus 238 ~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~----~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd 313 (768)
|...|.+++.. ++++++.+++.|+.|.-|...+... ......|...+.+++ .... .+++|+.|+.+.+-.
T Consensus 244 h~adVl~Lav~-~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~a--v~~~---~l~sgG~d~~l~i~~ 317 (691)
T KOG2048|consen 244 HDADVLALAVA-DNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMA--VIEN---ALISGGRDFTLAICS 317 (691)
T ss_pred hhcceeEEEEc-CCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeee--eecc---eEEecceeeEEEEcc
Confidence 88999999987 4778999999999999998876643 223467888999987 5444 599999999988875
Q ss_pred CCCceEEEeeecccC-cEEE-EEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccC
Q 004214 314 SESRCCVGVGTGHMG-AVGA-VAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN 391 (768)
Q Consensus 314 ~~~~~~~~~~~~~~~-~v~~-~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 391 (768)
.......... .+.. +-.+ +...| ..+++.--.+..+.+|.+.......+.... ............|.+.++||+
T Consensus 318 s~~~~~~~h~-~~~~~p~~~~v~~a~--~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~-~Llkl~~k~~~nIs~~aiSPd 393 (691)
T KOG2048|consen 318 SREFKNMDHR-QKNLFPASDRVSVAP--ENRLLVLWKAHGVDLWRLGSVILQGEYNYI-HLLKLFTKEKENISCAAISPD 393 (691)
T ss_pred ccccCchhhh-ccccccccceeecCc--cceEEEEeccccccceeccCcccccccChh-hheeeecCCccceeeeccCCC
Confidence 5442111100 0110 0011 12223 234555555677788877655332222211 222333344567999999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCCceEEEEe-----ccCCCeEEEEEccCCCEEEEee-CCCcEEEEeCCCCc--eeEEee--
Q 004214 392 DSLVCTGSQDRTACVWRLPDLVSVVTFR-----GHKRGIWSVEFSPVDQVVITAS-GDKTIKIWSISDGS--CLKTFE-- 461 (768)
Q Consensus 392 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~-----~~~~~v~~v~~s~~~~~l~t~~-~d~~i~iwd~~~~~--~~~~~~-- 461 (768)
|++++.++- ...++|.+.....+.... ....+...+.|+-+++.++.++ .+..+.++++.+.. .+..+.
T Consensus 394 g~~Ia~st~-~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~ 472 (691)
T KOG2048|consen 394 GNLIAISTV-SRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQ 472 (691)
T ss_pred CCEEEEeec-cceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccc
Confidence 999999875 467888876532222211 2234677888998888777777 67788888876543 333332
Q ss_pred cCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcC-CCCEEEEEeCCCcEEEEEcC
Q 004214 462 GHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGK-KTEMFATGGSDALVNLWHDS 536 (768)
Q Consensus 462 ~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~-~~~~l~s~~~dg~v~vw~~~ 536 (768)
+...+|..+..+|+|+||++.+.+|.|.+|++++.+.-.........|++++++| +...|+.+..++.+.-|+++
T Consensus 473 ~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~~~~lvvats~nQv~efdi~ 548 (691)
T KOG2048|consen 473 AKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKVRLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDIE 548 (691)
T ss_pred cCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchhccCcceeeeeccccccCcEEEEecCCeEEEEecc
Confidence 3557899999999999999999999999999999876665545668999999995 66789999999999999984
No 65
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.7e-31 Score=233.71 Aligned_cols=281 Identities=21% Similarity=0.289 Sum_probs=237.6
Q ss_pred eEEEEecCCCCEEEEEeC-------CCcEEEEECCCceeeeeee--CCccceEEEeeeeecCCCEEEEEEeCCCeEEEEe
Q 004214 243 LDLKFLGEEEQYLAVATN-------IEQVQVYDLSSMSCSYVLA--GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWD 313 (768)
Q Consensus 243 ~~~~~~~~~~~~l~~~~~-------~~~i~i~d~~~~~~~~~~~--~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd 313 (768)
.++.|+|--+++||+++. .|.+.|.++....-+.... .-.+.+..++ +++.....+++++.||++++||
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~--Wse~~e~~~~~a~GDGSLrl~d 89 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVA--WSENHENQVIAASGDGSLRLFD 89 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEee--ecCCCcceEEEEecCceEEEec
Confidence 577888877778877653 5889999986444443332 3456677777 5566666799999999999999
Q ss_pred CC-CceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEcc-C
Q 004214 314 SE-SRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP-N 391 (768)
Q Consensus 314 ~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~ 391 (768)
+. ...++..++.|...|.++.|++..+..++++++|++|++|+... .....++.+|...|...+|+| .
T Consensus 90 ~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r----------~~Sv~Tf~gh~~~Iy~a~~sp~~ 159 (311)
T KOG0277|consen 90 LTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNR----------PNSVQTFNGHNSCIYQAAFSPHI 159 (311)
T ss_pred cCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCC----------CcceEeecCCccEEEEEecCCCC
Confidence 65 34688889999999999999998888899999999999999873 346677899999999999999 6
Q ss_pred CCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEcc-CCCEEEEeeCCCcEEEEeCCCC-ceeEEeecCCCcEEE
Q 004214 392 DSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSP-VDQVVITASGDKTIKIWSISDG-SCLKTFEGHTSSVLR 469 (768)
Q Consensus 392 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~t~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~ 469 (768)
++++++++.|+++++||++.......+..|...|.|+.|+. +.++|+||+.|+.|++||+++- .++..+.+|.-.|..
T Consensus 160 ~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRk 239 (311)
T KOG0277|consen 160 PNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRK 239 (311)
T ss_pred CCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEE
Confidence 88999999999999999987655555899999999999998 4678999999999999999875 578889999999999
Q ss_pred EEEEeCC-CEEEEEeCCCcEEEEECCCC-eEEEEeccCCCcEEEEEEcC-CCCEEEEEeCCCcEEEEEc
Q 004214 470 ASFLTRG-AQIVSCGADGLVKLWTVRTG-ECIATYDKHEDKIWALAVGK-KTEMFATGGSDALVNLWHD 535 (768)
Q Consensus 470 ~~~s~~~-~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~l~~s~-~~~~l~s~~~dg~v~vw~~ 535 (768)
++|||.. ..|++++.|-+++|||...+ .++.+...|..-|..+.||+ ++.++|+++-|+.++||+.
T Consensus 240 vk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 240 VKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred EecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 9999964 57899999999999998854 56677788889999999998 6779999999999999984
No 66
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=7.4e-31 Score=232.63 Aligned_cols=291 Identities=22% Similarity=0.297 Sum_probs=228.0
Q ss_pred EEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 004214 25 YFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLR 104 (768)
Q Consensus 25 ~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~ 104 (768)
.++||..+++.+.|+.+|+. |++++.|.++.||-..+|+.+.++.||.+.|+++..+.+.++|+|++.|.++++||++
T Consensus 5 ~l~GHERplTqiKyN~eGDL--lFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~ 82 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDL--LFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVE 82 (327)
T ss_pred ccccCccccceEEecCCCcE--EEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcC
Confidence 47899999999999999998 9999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeecc
Q 004214 105 DYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISF 184 (768)
Q Consensus 105 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~ 184 (768)
+|+++.+++...++..+.|++.+..+ +...++ .
T Consensus 83 tGk~la~~k~~~~Vk~~~F~~~gn~~-----------------------l~~tD~-~----------------------- 115 (327)
T KOG0643|consen 83 TGKQLATWKTNSPVKRVDFSFGGNLI-----------------------LASTDK-Q----------------------- 115 (327)
T ss_pred CCcEEEEeecCCeeEEEeeccCCcEE-----------------------EEEehh-h-----------------------
Confidence 99999999998888888888877521 111110 0
Q ss_pred cccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcE
Q 004214 185 EMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQV 264 (768)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i 264 (768)
.+. .+.|
T Consensus 116 -----------------------mg~--------------------------------------------------~~~v 122 (327)
T KOG0643|consen 116 -----------------------MGY--------------------------------------------------TCFV 122 (327)
T ss_pred -----------------------cCc--------------------------------------------------ceEE
Confidence 000 1223
Q ss_pred EEEECC-------CceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCc-eEEEeeecccCcEEEEEEe
Q 004214 265 QVYDLS-------SMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR-CCVGVGTGHMGAVGAVAFS 336 (768)
Q Consensus 265 ~i~d~~-------~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~ 336 (768)
.++|++ +..+...+..+.+.++.+- +.+.+.. |++|..||.|.+||..++ +.+.....|...|+.+.++
T Consensus 123 ~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~--Wg~l~~~-ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s 199 (327)
T KOG0643|consen 123 SVFDIRDDSSDIDSEEPYLKIPTPDSKITSAL--WGPLGET-IIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFS 199 (327)
T ss_pred EEEEccCChhhhcccCceEEecCCccceeeee--ecccCCE-EEEecCCCcEEEEEcccCceeeechhhhcccccccccc
Confidence 333332 3334455556666666664 5666665 999999999999999997 5566667899999999999
Q ss_pred cCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCc-------------
Q 004214 337 KKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRT------------- 403 (768)
Q Consensus 337 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~------------- 403 (768)
|+.. ++++++.|.+-++||+... ....+ .....+|++.+++|....++.|+....
T Consensus 200 ~d~T-~FiT~s~Dttakl~D~~tl----------~v~Kt-y~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKF 267 (327)
T KOG0643|consen 200 RDRT-YFITGSKDTTAKLVDVRTL----------EVLKT-YTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKF 267 (327)
T ss_pred CCcc-eEEecccCccceeeeccce----------eeEEE-eeecccccceecccccceEEecCCceeeeeeeecccccch
Confidence 9955 8999999999999999843 22222 335678999999997666666543211
Q ss_pred -EEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCC
Q 004214 404 -ACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSIS 452 (768)
Q Consensus 404 -i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~ 452 (768)
.++|++-..+.+..+++|-++|++++|+|+|+..++|++||.|++.-..
T Consensus 268 EArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 268 EARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred hhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEec
Confidence 1222222335677888999999999999999999999999999998654
No 67
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.98 E-value=1.2e-27 Score=239.34 Aligned_cols=460 Identities=14% Similarity=0.176 Sum_probs=333.5
Q ss_pred cCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCe-eEEEecCcc-ceeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004214 28 GHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK-CVATLDKHF-SRVTSMAITSDGSTLISAGRDKVVNLWDLRD 105 (768)
Q Consensus 28 gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~-~~~~l~~h~-~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~~ 105 (768)
--...|+||||+.+.+. ||.+-.||.|-||++..+- +...+.++. +.|.+++|+ ++..|+|.+.+|.|.-||+.+
T Consensus 23 ~~Ps~I~slA~s~kS~~--lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~ 99 (691)
T KOG2048|consen 23 YKPSEIVSLAYSHKSNQ--LAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHT 99 (691)
T ss_pred eeccceEEEEEeccCCc--eeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEeccc
Confidence 35679999999998887 9999999999999998763 344566654 489999999 566899999999999999999
Q ss_pred Ceeeeeeec-ceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeecc
Q 004214 106 YSCKLTVPT-YEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISF 184 (768)
Q Consensus 106 ~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~ 184 (768)
++.+..+.. ...+.+++..|.+. .+..+++||.+..++...+.+.......
T Consensus 100 lk~~~~~d~~gg~IWsiai~p~~~-----------------------~l~IgcddGvl~~~s~~p~~I~~~r~l~----- 151 (691)
T KOG2048|consen 100 LKQKYNIDSNGGAIWSIAINPENT-----------------------ILAIGCDDGVLYDFSIGPDKITYKRSLM----- 151 (691)
T ss_pred CceeEEecCCCcceeEEEeCCccc-----------------------eEEeecCCceEEEEecCCceEEEEeecc-----
Confidence 999888865 45689999998876 7788899998888888877554333222
Q ss_pred cccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccce-eeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCc
Q 004214 185 EMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKM-ELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQ 263 (768)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~ 263 (768)
.....+..+.+.|++..++.|+.||.|++|+......... .....+...+...-|.++.|. ....+++|...|.
T Consensus 152 ---rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~L--rd~tI~sgDS~G~ 226 (691)
T KOG2048|consen 152 ---RQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFL--RDSTIASGDSAGT 226 (691)
T ss_pred ---cccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEe--ecCcEEEecCCce
Confidence 2235677888999999999999999999999987754321 011111112234457788887 4568999999999
Q ss_pred EEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceE----EEeeecccCcEEEEEEecCC
Q 004214 264 VQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC----VGVGTGHMGAVGAVAFSKKL 339 (768)
Q Consensus 264 i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~~~~~~~~ 339 (768)
|.+||...+..+.....|...|.|++ ..+++.. +++++.|+.|..|...++.. ......|...|.+++..++
T Consensus 227 V~FWd~~~gTLiqS~~~h~adVl~La--v~~~~d~-vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~- 302 (691)
T KOG2048|consen 227 VTFWDSIFGTLIQSHSCHDADVLALA--VADNEDR-VFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN- 302 (691)
T ss_pred EEEEcccCcchhhhhhhhhcceeEEE--EcCCCCe-EEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc-
Confidence 99999999999999999999999997 5555555 99999999999998776532 2234578999999999987
Q ss_pred CcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCc------
Q 004214 340 QNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLV------ 413 (768)
Q Consensus 340 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~------ 413 (768)
.+++|+.|.++.+-......... ........+. . -+...|.. ++..--....+.+|.+.+..
T Consensus 303 --~l~sgG~d~~l~i~~s~~~~~~~------h~~~~~~p~~-~--~v~~a~~~-~L~~~w~~h~v~lwrlGS~~~~g~~~ 370 (691)
T KOG2048|consen 303 --ALISGGRDFTLAICSSREFKNMD------HRQKNLFPAS-D--RVSVAPEN-RLLVLWKAHGVDLWRLGSVILQGEYN 370 (691)
T ss_pred --eEEecceeeEEEEccccccCchh------hhcccccccc-c--eeecCccc-eEEEEeccccccceeccCcccccccC
Confidence 79999999999887655321100 0000000111 1 12223333 33333445667777765441
Q ss_pred ---eEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEee-----cCCCcEEEEEEEeCCCEEEEEe-C
Q 004214 414 ---SVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFE-----GHTSSVLRASFLTRGAQIVSCG-A 484 (768)
Q Consensus 414 ---~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~s~~-~ 484 (768)
...-.......|.|.+.||+|++++.+.- ..++||.+...-.+.... ...-+...+.|+-+++.++.++ .
T Consensus 371 ~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~-~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~ 449 (691)
T KOG2048|consen 371 YIHLLKLFTKEKENISCAAISPDGNLIAISTV-SRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKN 449 (691)
T ss_pred hhhheeeecCCccceeeeccCCCCCEEEEeec-cceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecc
Confidence 11222224567999999999999998875 678899886533222221 2234667788999998888777 6
Q ss_pred CCcEEEEECCCCe--EEEEec--cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCHHH
Q 004214 485 DGLVKLWTVRTGE--CIATYD--KHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAE 540 (768)
Q Consensus 485 dg~i~iwd~~~~~--~~~~~~--~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~~~ 540 (768)
+..+.+++..+.. .+..+. +-...|..+..||+|++||+.+.+|.|.+|++.+.+.
T Consensus 450 ~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~ 509 (691)
T KOG2048|consen 450 IFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLES 509 (691)
T ss_pred cceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccceEEEEEccccee
Confidence 7788888776543 222221 2456799999999999999999999999999987543
No 68
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.98 E-value=2e-30 Score=241.20 Aligned_cols=281 Identities=30% Similarity=0.449 Sum_probs=230.2
Q ss_pred CCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCC---CCEEEEEeCCCeEEEEECCC
Q 004214 29 HKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSD---GSTLISAGRDKVVNLWDLRD 105 (768)
Q Consensus 29 h~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d---~~~L~s~~~dg~i~vWd~~~ 105 (768)
|.+.|.++...+ +. +++|+.||.++|||. .|++...+.||.++|.+++|--- ...++++|.|.++++|.++.
T Consensus 104 hdDWVSsv~~~~--~~--IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~ 178 (423)
T KOG0313|consen 104 HDDWVSSVKGAS--KW--ILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNV 178 (423)
T ss_pred chhhhhhhcccC--ce--EEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecC
Confidence 888888888874 56 999999999999997 89999999999999998887532 23589999999999987754
Q ss_pred CeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeeccc
Q 004214 106 YSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFE 185 (768)
Q Consensus 106 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~ 185 (768)
+.....
T Consensus 179 ~~~~~~-------------------------------------------------------------------------- 184 (423)
T KOG0313|consen 179 GENKVK-------------------------------------------------------------------------- 184 (423)
T ss_pred chhhhh--------------------------------------------------------------------------
Confidence 321100
Q ss_pred ccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEE
Q 004214 186 MDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQ 265 (768)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~ 265 (768)
T Consensus 185 -------------------------------------------------------------------------------- 184 (423)
T KOG0313|consen 185 -------------------------------------------------------------------------------- 184 (423)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCC-------------------------CceEE
Q 004214 266 VYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSE-------------------------SRCCV 320 (768)
Q Consensus 266 i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~-------------------------~~~~~ 320 (768)
.+..-.||...|.+++ ..+++.. +++|+.|..|.+|+.. ++.++
T Consensus 185 --------~~~~~~GHk~~V~sVs--v~~sgtr-~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~ 253 (423)
T KOG0313|consen 185 --------ALKVCRGHKRSVDSVS--VDSSGTR-FCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPL 253 (423)
T ss_pred --------HHhHhcccccceeEEE--ecCCCCe-EEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCce
Confidence 0012227888888886 6666666 9999999999999822 13456
Q ss_pred EeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeC
Q 004214 321 GVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ 400 (768)
Q Consensus 321 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 400 (768)
..+.+|..+|.++.|++. ..++++++|.+|+.||+..+... .....+..++++..+|..++|++|+.
T Consensus 254 vtl~GHt~~Vs~V~w~d~--~v~yS~SwDHTIk~WDletg~~~-----------~~~~~~ksl~~i~~~~~~~Ll~~gss 320 (423)
T KOG0313|consen 254 VTLEGHTEPVSSVVWSDA--TVIYSVSWDHTIKVWDLETGGLK-----------STLTTNKSLNCISYSPLSKLLASGSS 320 (423)
T ss_pred EEecccccceeeEEEcCC--CceEeecccceEEEEEeecccce-----------eeeecCcceeEeecccccceeeecCC
Confidence 678899999999999984 36999999999999999865321 11224567899999999999999999
Q ss_pred CCcEEEEeCCCCc---eEEEEeccCCCeEEEEEccCC-CEEEEeeCCCcEEEEeCCCCc-eeEEeecCCCcEEEEEEEeC
Q 004214 401 DRTACVWRLPDLV---SVVTFRGHKRGIWSVEFSPVD-QVVITASGDKTIKIWSISDGS-CLKTFEGHTSSVLRASFLTR 475 (768)
Q Consensus 401 dg~i~i~d~~~~~---~~~~~~~~~~~v~~v~~s~~~-~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~ 475 (768)
|..+++||.+++. ...++.+|..-|.++.|+|.. ..|++|+.|+++++||+++.+ ++..+.+|...|.++.|. +
T Consensus 321 dr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~ 399 (423)
T KOG0313|consen 321 DRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-E 399 (423)
T ss_pred CCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-C
Confidence 9999999998763 456788999999999999965 578899999999999999887 999999999999999997 4
Q ss_pred CCEEEEEeCCCcEEEEEC
Q 004214 476 GAQIVSCGADGLVKLWTV 493 (768)
Q Consensus 476 ~~~l~s~~~dg~i~iwd~ 493 (768)
+.++++||.|.+|+|+.-
T Consensus 400 ~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 400 GGLIVSGGADNKLRIFKG 417 (423)
T ss_pred CceEEeccCcceEEEecc
Confidence 569999999999999864
No 69
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.98 E-value=2.7e-30 Score=270.84 Aligned_cols=281 Identities=28% Similarity=0.486 Sum_probs=250.5
Q ss_pred cCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeee-eeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCC
Q 004214 238 YNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYV-LAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES 316 (768)
Q Consensus 238 ~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~-~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 316 (768)
+...+.+..+. ..++++++.++.|.+|+..++..+.. +.+|.+.|.++. + +.+..++++|+.|.++++||..+
T Consensus 207 ~~~~~~~~q~~---~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~--~-~~~~~~lvsgS~D~t~rvWd~~s 280 (537)
T KOG0274|consen 207 DDHVVLCLQLH---DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLA--F-PSGGDKLVSGSTDKTERVWDCST 280 (537)
T ss_pred Ccchhhhheee---cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEE--E-ecCCCEEEEEecCCcEEeEecCC
Confidence 44556666665 66899999999999999999999888 999999999995 3 43555699999999999999999
Q ss_pred ceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEE
Q 004214 317 RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVC 396 (768)
Q Consensus 317 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 396 (768)
+.+..++.+|.+.|.++...+. .+++|+.|.+|++|+++++ .......+|..+|+++.++ +.+++
T Consensus 281 g~C~~~l~gh~stv~~~~~~~~---~~~sgs~D~tVkVW~v~n~----------~~l~l~~~h~~~V~~v~~~--~~~lv 345 (537)
T KOG0274|consen 281 GECTHSLQGHTSSVRCLTIDPF---LLVSGSRDNTVKVWDVTNG----------ACLNLLRGHTGPVNCVQLD--EPLLV 345 (537)
T ss_pred CcEEEEecCCCceEEEEEccCc---eEeeccCCceEEEEeccCc----------ceEEEeccccccEEEEEec--CCEEE
Confidence 9999999999999999998775 6889999999999999843 4666677799999999998 88999
Q ss_pred EEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCC-ceeEEeecCCCcEEEEEEEeC
Q 004214 397 TGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG-SCLKTFEGHTSSVLRASFLTR 475 (768)
Q Consensus 397 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~ 475 (768)
+|+.||+|++||+.+++++.++.+|...|.++.+.+. ..+++|+.|++|++||+.+. +|+.++.+|..-+..+.+ .
T Consensus 346 sgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~ 422 (537)
T KOG0274|consen 346 SGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--R 422 (537)
T ss_pred EEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--c
Confidence 9999999999999999999999999999999988865 89999999999999999999 999999999998866554 5
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEecc-CCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCHHHHHHH
Q 004214 476 GAQIVSCGADGLVKLWTVRTGECIATYDK-HEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAEREEA 544 (768)
Q Consensus 476 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~ 544 (768)
+++|++++.||+|++||..+++++.++.+ |...|+++++. ...+++++.||.+.+||+.++......
T Consensus 423 ~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 423 DNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred cceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchhhhh
Confidence 77999999999999999999999999998 67899998886 567999999999999999988765543
No 70
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.98 E-value=5.7e-30 Score=226.35 Aligned_cols=234 Identities=16% Similarity=0.274 Sum_probs=207.8
Q ss_pred ecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeC
Q 004214 235 LVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDS 314 (768)
Q Consensus 235 ~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~ 314 (768)
..+|.+.|-.++|.++....+++++.+..|++||..++++........+.+.-. ++|++++ ++.++.|..|...|.
T Consensus 60 ~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~i~---wsp~g~~-~~~~~kdD~it~id~ 135 (313)
T KOG1407|consen 60 YRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENINIT---WSPDGEY-IAVGNKDDRITFIDA 135 (313)
T ss_pred ccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcceEEE---EcCCCCE-EEEecCcccEEEEEe
Confidence 346777888899999999999999999999999999999998887777776655 8888887 999999999999999
Q ss_pred CCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCE
Q 004214 315 ESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSL 394 (768)
Q Consensus 315 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 394 (768)
++.+.....+ ....+.-++|+.+ +++++.....|+|.|.... .+++.....+|.....|+.|+|+|++
T Consensus 136 r~~~~~~~~~-~~~e~ne~~w~~~-nd~Fflt~GlG~v~ILsyp----------sLkpv~si~AH~snCicI~f~p~Gry 203 (313)
T KOG1407|consen 136 RTYKIVNEEQ-FKFEVNEISWNNS-NDLFFLTNGLGCVEILSYP----------SLKPVQSIKAHPSNCICIEFDPDGRY 203 (313)
T ss_pred cccceeehhc-ccceeeeeeecCC-CCEEEEecCCceEEEEecc----------ccccccccccCCcceEEEEECCCCce
Confidence 9887776544 3456777888855 4577777788999999887 56688888999999999999999999
Q ss_pred EEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEe
Q 004214 395 VCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLT 474 (768)
Q Consensus 395 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~ 474 (768)
+|+|+.|..+.+||++..-+.+.+..+.-+|..+.||.+|++||+|++|..|-|=++.+|..+..+. +.++...++|+|
T Consensus 204 fA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHP 282 (313)
T KOG1407|consen 204 FATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHP 282 (313)
T ss_pred EeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecC
Confidence 9999999999999999999999999999999999999999999999999999999999999999998 889999999999
Q ss_pred CCCEEEEEeCC
Q 004214 475 RGAQIVSCGAD 485 (768)
Q Consensus 475 ~~~~l~s~~~d 485 (768)
...+||-++.|
T Consensus 283 k~~LLAyA~dd 293 (313)
T KOG1407|consen 283 KRPLLAYACDD 293 (313)
T ss_pred CCceeeEEecC
Confidence 99999887764
No 71
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.98 E-value=9.6e-30 Score=225.58 Aligned_cols=295 Identities=21% Similarity=0.231 Sum_probs=246.7
Q ss_pred eecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEe
Q 004214 234 RLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWD 313 (768)
Q Consensus 234 ~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd 313 (768)
.+.||..+++.+.|+ .++.+|.+++.|....+|-...|+.+-++.+|++.|.|++ ...+... +++|+.|.++++||
T Consensus 5 ~l~GHERplTqiKyN-~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~D--id~~s~~-liTGSAD~t~kLWD 80 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYN-REGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCD--IDWDSKH-LITGSADQTAKLWD 80 (327)
T ss_pred ccccCccccceEEec-CCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEE--ecCCcce-eeeccccceeEEEE
Confidence 467899999999998 4888999999999999999999999999999999999998 5555555 99999999999999
Q ss_pred CCCceEEEeeecccCcEEEEEEecCCCcEEEEE----eCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEc
Q 004214 314 SESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSG----SSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVA 389 (768)
Q Consensus 314 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 389 (768)
+.+|+++..++ ...+|..+.|+++|...+++. +..+.|.++|++...... ....+......+.+.++.+-|+
T Consensus 81 v~tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~---~s~ep~~kI~t~~skit~a~Wg 156 (327)
T KOG0643|consen 81 VETGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDI---DSEEPYLKIPTPDSKITSALWG 156 (327)
T ss_pred cCCCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhh---cccCceEEecCCccceeeeeec
Confidence 99999999887 457899999999987444433 335789999998553211 1233455666777999999999
Q ss_pred cCCCEEEEEeCCCcEEEEeCCCCc-eEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEE
Q 004214 390 PNDSLVCTGSQDRTACVWRLPDLV-SVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVL 468 (768)
Q Consensus 390 ~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~ 468 (768)
|-++.|++|..||.|.+||+++++ .+.....|...|+.+.++|+..++++++.|.+-++||..+.++++++. ...+|+
T Consensus 157 ~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~-te~PvN 235 (327)
T KOG0643|consen 157 PLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT-TERPVN 235 (327)
T ss_pred ccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEee-eccccc
Confidence 999999999999999999999974 555667899999999999999999999999999999999999999998 678999
Q ss_pred EEEEEeCCCEEEEEeCCCc--EE------------EEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004214 469 RASFLTRGAQIVSCGADGL--VK------------LWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 534 (768)
Q Consensus 469 ~~~~s~~~~~l~s~~~dg~--i~------------iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~ 534 (768)
+.+++|....++.|+.-.. |. +|++-.-+.+..+++|-++|++++|+|+|...++||+||.|++..
T Consensus 236 ~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~ 315 (327)
T KOG0643|consen 236 TAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHH 315 (327)
T ss_pred ceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEE
Confidence 9999998887777664322 22 222222345667789999999999999999999999999999986
Q ss_pred cCC
Q 004214 535 DST 537 (768)
Q Consensus 535 ~~~ 537 (768)
...
T Consensus 316 Fd~ 318 (327)
T KOG0643|consen 316 FDS 318 (327)
T ss_pred ecc
Confidence 653
No 72
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.98 E-value=3.3e-31 Score=232.32 Aligned_cols=289 Identities=20% Similarity=0.296 Sum_probs=236.6
Q ss_pred EEEEcCCCcEEEEEEee---CCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEE
Q 004214 24 HYFKGHKGVVSSILFHP---DTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNL 100 (768)
Q Consensus 24 ~~l~gh~~~V~~l~~sp---d~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~v 100 (768)
.+..||+.+|..++||| +|-+ |++++.||.-.+-+-++|.-+.+|.+|.+.|++..+..+....++++.|-+-++
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~f--lisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakv 85 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYF--LISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKV 85 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceE--EEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhh
Confidence 46679999999999986 5544 999999999999999999999999999999999999999989999999999999
Q ss_pred EECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCce
Q 004214 101 WDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDV 180 (768)
Q Consensus 101 Wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~ 180 (768)
||.-+|..+.++.+...+.+++|+.+..
T Consensus 86 w~a~tgdelhsf~hkhivk~~af~~ds~---------------------------------------------------- 113 (334)
T KOG0278|consen 86 WDAVTGDELHSFEHKHIVKAVAFSQDSN---------------------------------------------------- 113 (334)
T ss_pred hhhhhhhhhhhhhhhheeeeEEecccch----------------------------------------------------
Confidence 9999998888887766666666655443
Q ss_pred eecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeC
Q 004214 181 TISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATN 260 (768)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~ 260 (768)
+|++|+.
T Consensus 114 -------------------------------------------------------------------------~lltgg~ 120 (334)
T KOG0278|consen 114 -------------------------------------------------------------------------YLLTGGQ 120 (334)
T ss_pred -------------------------------------------------------------------------hhhccch
Confidence 3444444
Q ss_pred CCcEEEEECCCce-eeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCC
Q 004214 261 IEQVQVYDLSSMS-CSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKL 339 (768)
Q Consensus 261 ~~~i~i~d~~~~~-~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 339 (768)
+..+++||++..+ +...+.+|.+.|..+. |...+.. +++++.|++||+||.+++..+..+. ...+|+++.++++|
T Consensus 121 ekllrvfdln~p~App~E~~ghtg~Ir~v~--wc~eD~~-iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG 196 (334)
T KOG0278|consen 121 EKLLRVFDLNRPKAPPKEISGHTGGIRTVL--WCHEDKC-ILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDG 196 (334)
T ss_pred HHHhhhhhccCCCCCchhhcCCCCcceeEE--EeccCce-EEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCC
Confidence 4444444444332 3346678888888887 4455665 7888999999999999999998876 45789999999997
Q ss_pred CcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEE-
Q 004214 340 QNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTF- 418 (768)
Q Consensus 340 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~- 418 (768)
. +++....+.|++||...... ... ..-...|.+...+|+...+++|+.|..++.||..+++.+..+
T Consensus 197 ~--ilTia~gssV~Fwdaksf~~----------lKs-~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~n 263 (334)
T KOG0278|consen 197 R--ILTIAYGSSVKFWDAKSFGL----------LKS-YKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYN 263 (334)
T ss_pred C--EEEEecCceeEEeccccccc----------eee-ccCccccccccccCCCceEEecCcceEEEEEeccCCceeeecc
Confidence 6 77778889999999875432 111 123456889999999999999999999999999999999886
Q ss_pred eccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCce
Q 004214 419 RGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSC 456 (768)
Q Consensus 419 ~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~ 456 (768)
++|.++|.|+.|+|+|...++|++||+|++|....++.
T Consensus 264 kgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 264 KGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred cCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence 89999999999999999999999999999999866553
No 73
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=1.5e-29 Score=223.69 Aligned_cols=278 Identities=19% Similarity=0.262 Sum_probs=244.1
Q ss_pred eeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeee--eeCCccceEEEeeeeecCCCEEEEEEeCCCeEE
Q 004214 233 KRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYV--LAGHSEIVLCLDTCALSSGKILIVTGSKDNSVR 310 (768)
Q Consensus 233 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~--~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~ 310 (768)
+...+|...+.+++|.. ++..++.++.++.+.+|++........ ..+|.+.|-.+. +.+....++++++.|.+|+
T Consensus 14 r~~~~~~~~v~Sv~wn~-~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~--w~~~~~d~~atas~dk~ir 90 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNC-DGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLC--WDPKHPDLFATASGDKTIR 90 (313)
T ss_pred HHhhhhhhcceEEEEcc-cCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhhe--eCCCCCcceEEecCCceEE
Confidence 56678889999999984 889999999999999999988765543 578988888887 7787777899999999999
Q ss_pred EEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEcc
Q 004214 311 LWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP 390 (768)
Q Consensus 311 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 390 (768)
+||.+.+++........+.+ -+.|+|+|. ++++++.|..|.+.|.+...... .......++-++|+.
T Consensus 91 ~wd~r~~k~~~~i~~~~eni-~i~wsp~g~-~~~~~~kdD~it~id~r~~~~~~-----------~~~~~~e~ne~~w~~ 157 (313)
T KOG1407|consen 91 IWDIRSGKCTARIETKGENI-NITWSPDGE-YIAVGNKDDRITFIDARTYKIVN-----------EEQFKFEVNEISWNN 157 (313)
T ss_pred EEEeccCcEEEEeeccCcce-EEEEcCCCC-EEEEecCcccEEEEEecccceee-----------hhcccceeeeeeecC
Confidence 99999999998877555444 577999977 79999999999999988542211 122334577888998
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEE
Q 004214 391 NDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRA 470 (768)
Q Consensus 391 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~ 470 (768)
++.+++.....|+|.|......+++..++.|.....|+.|+|+|+++|+|+.|..+.+||+..--|++.+..+.-+|..+
T Consensus 158 ~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTl 237 (313)
T KOG1407|consen 158 SNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTL 237 (313)
T ss_pred CCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEE
Confidence 88888887888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCC
Q 004214 471 SFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSD 527 (768)
Q Consensus 471 ~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~d 527 (768)
.|+.||++||+|++|..|-|=++++|..+..+. +.++...++|+|....||-++.|
T Consensus 238 SFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 238 SFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred EeccCcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecC
Confidence 999999999999999999999999999999997 89999999999999999977754
No 74
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.97 E-value=1e-29 Score=266.53 Aligned_cols=290 Identities=35% Similarity=0.596 Sum_probs=251.3
Q ss_pred EEEEc-CCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEE-ecCccceeEEEEEcCCCCEEEEEeCCCeEEEE
Q 004214 24 HYFKG-HKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVAT-LDKHFSRVTSMAITSDGSTLISAGRDKVVNLW 101 (768)
Q Consensus 24 ~~l~g-h~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~-l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vW 101 (768)
..+.+ |...+.+..|++ .+ +++++.|++|++||..++..+.. +.||.+.|++++|..-+.+|++|+.|.++++|
T Consensus 201 ~~~~~~~~~~~~~~q~~~--~~--~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvW 276 (537)
T KOG0274|consen 201 KVLLGTDDHVVLCLQLHD--GF--FKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVW 276 (537)
T ss_pred eeecccCcchhhhheeec--Ce--EEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeE
Confidence 34444 677899999983 44 99999999999999999999988 99999999999998878899999999988888
Q ss_pred ECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCcee
Q 004214 102 DLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVT 181 (768)
Q Consensus 102 d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~ 181 (768)
|..+|+|.
T Consensus 277 d~~sg~C~------------------------------------------------------------------------ 284 (537)
T KOG0274|consen 277 DCSTGECT------------------------------------------------------------------------ 284 (537)
T ss_pred ecCCCcEE------------------------------------------------------------------------
Confidence 87665433
Q ss_pred ecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCC
Q 004214 182 ISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNI 261 (768)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~ 261 (768)
T Consensus 285 -------------------------------------------------------------------------------- 284 (537)
T KOG0274|consen 285 -------------------------------------------------------------------------------- 284 (537)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCc
Q 004214 262 EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQN 341 (768)
Q Consensus 262 ~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 341 (768)
..+.+|.+.+.|+. ....++++|+.|.+|++|++.++..+..+.+|.++|.++.++. .
T Consensus 285 --------------~~l~gh~stv~~~~-----~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~~---~ 342 (537)
T KOG0274|consen 285 --------------HSLQGHTSSVRCLT-----IDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLDE---P 342 (537)
T ss_pred --------------EEecCCCceEEEEE-----ccCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEecC---C
Confidence 35556777777764 2233588899999999999999999999999999999999983 3
Q ss_pred EEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC-ceEEEEec
Q 004214 342 FLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDL-VSVVTFRG 420 (768)
Q Consensus 342 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~ 420 (768)
++++|+.|++|++||+. ..+....+.+|...|.++.+.+. ..+++|+.|++|++||+++. +++.++.+
T Consensus 343 ~lvsgs~d~~v~VW~~~----------~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~ 411 (537)
T KOG0274|consen 343 LLVSGSYDGTVKVWDPR----------TGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQG 411 (537)
T ss_pred EEEEEecCceEEEEEhh----------hceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcC
Confidence 89999999999999998 45688888999999999988776 89999999999999999999 99999999
Q ss_pred cCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeec-CCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEE
Q 004214 421 HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEG-HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECI 499 (768)
Q Consensus 421 ~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 499 (768)
|..-+..+.+. +++|++++.|++|++||..++++++++.+ |...|..+++. ...+++++.||.+++||++++++.
T Consensus 412 h~~~v~~l~~~--~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~ 487 (537)
T KOG0274|consen 412 HTSLVSSLLLR--DNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLI 487 (537)
T ss_pred Ccccccccccc--cceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchh
Confidence 99988776655 88999999999999999999999999998 67888888876 468899999999999999999998
Q ss_pred EEeccCC
Q 004214 500 ATYDKHE 506 (768)
Q Consensus 500 ~~~~~~~ 506 (768)
..+-.+.
T Consensus 488 ~~l~~~~ 494 (537)
T KOG0274|consen 488 RTLLSTD 494 (537)
T ss_pred hhhhhcc
Confidence 8774343
No 75
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1e-28 Score=225.68 Aligned_cols=286 Identities=18% Similarity=0.276 Sum_probs=239.5
Q ss_pred eeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeC--CCeEE
Q 004214 233 KRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSK--DNSVR 310 (768)
Q Consensus 233 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~--dg~i~ 310 (768)
+.+....+.|.++.|+ +++.++++++.|..+++||..++.++..+..+.-.+..+. +...... ++.++. |.+|+
T Consensus 8 k~f~~~~~~i~sl~fs-~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~--Fth~~~~-~i~sStk~d~tIr 83 (311)
T KOG1446|consen 8 KVFRETNGKINSLDFS-DDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLAC--FTHHSNT-VIHSSTKEDDTIR 83 (311)
T ss_pred cccccCCCceeEEEec-CCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEE--EecCCce-EEEccCCCCCceE
Confidence 4444567889999998 4788889999999999999999999999998887877776 6666666 444544 88999
Q ss_pred EEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEcc
Q 004214 311 LWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP 390 (768)
Q Consensus 311 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 390 (768)
..++.+++.++.+.||...|.+++.+|.+. .+++++.|++|++||++... +.... +...-..++|+|
T Consensus 84 yLsl~dNkylRYF~GH~~~V~sL~~sP~~d-~FlS~S~D~tvrLWDlR~~~----------cqg~l--~~~~~pi~AfDp 150 (311)
T KOG1446|consen 84 YLSLHDNKYLRYFPGHKKRVNSLSVSPKDD-TFLSSSLDKTVRLWDLRVKK----------CQGLL--NLSGRPIAAFDP 150 (311)
T ss_pred EEEeecCceEEEcCCCCceEEEEEecCCCC-eEEecccCCeEEeeEecCCC----------CceEE--ecCCCcceeECC
Confidence 999999999999999999999999999874 79999999999999998432 22222 222334679999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCC--ceEEEEe---ccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCC
Q 004214 391 NDSLVCTGSQDRTACVWRLPDL--VSVVTFR---GHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTS 465 (768)
Q Consensus 391 ~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~---~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~ 465 (768)
.|-++|++.....|++||++.. .+..++. +.....+.+.|||+|++++.+...+.+++.|.-+|..+.++.++..
T Consensus 151 ~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~ 230 (311)
T KOG1446|consen 151 EGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPN 230 (311)
T ss_pred CCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccC
Confidence 9999999998889999999864 3444443 3466789999999999999999999999999999999999987765
Q ss_pred cE---EEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEecc-CCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 004214 466 SV---LRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDK-HEDKIWALAVGKKTEMFATGGSDALVNLWHDST 537 (768)
Q Consensus 466 ~v---~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~ 537 (768)
.- ...+|+||++++++|+.||+|.+|++++|..+..+.+ +.+++.++.|+|.-.++++++ ..+.+|-...
T Consensus 231 ~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~--s~l~fw~p~~ 304 (311)
T KOG1446|consen 231 AGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSAS--SNLVFWLPDE 304 (311)
T ss_pred CCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecC--ceEEEEeccc
Confidence 43 6788999999999999999999999999999999998 689999999999887777765 4688887653
No 76
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=4.1e-30 Score=226.28 Aligned_cols=283 Identities=22% Similarity=0.361 Sum_probs=236.4
Q ss_pred eEEEEccCC-CceEEE-------EecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEE
Q 004214 194 TAATVLPSN-QGLLCV-------TADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQ 265 (768)
Q Consensus 194 ~~~~~~~~~-~~l~~~-------~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~ 265 (768)
..+.|+|-- ++++++ ..+|.+.+.++...+. +.. .......+.+.+++|++..++.+++++.||.++
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~g----i~e-~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLr 86 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKG----IQE-CQSYDTEDGLFDVAWSENHENQVIAASGDGSLR 86 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCC----eEE-EEeeecccceeEeeecCCCcceEEEEecCceEE
Confidence 455566653 334333 3578888888863321 111 122234568899999999999999999999999
Q ss_pred EEECCC-ceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEE
Q 004214 266 VYDLSS-MSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLV 344 (768)
Q Consensus 266 i~d~~~-~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 344 (768)
+||+.. ..++..++.|...|.+++ +....+..+++++.||+|++|+...+..+.++.+|...|....|+|..+++++
T Consensus 87 l~d~~~~s~Pi~~~kEH~~EV~Svd--wn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfa 164 (311)
T KOG0277|consen 87 LFDLTMPSKPIHKFKEHKREVYSVD--WNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFA 164 (311)
T ss_pred EeccCCCCcchhHHHhhhhheEEec--cccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEE
Confidence 999653 456778899999999999 77777777899999999999999999999999999999999999999999999
Q ss_pred EEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCC-ceEEEEeccC
Q 004214 345 SGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQDRTACVWRLPDL-VSVVTFRGHK 422 (768)
Q Consensus 345 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~ 422 (768)
+++.|+++++||++.. .+. ..+..|...|.++.|+. +...+++|+.|+.|+.||+++. .++..+.+|.
T Consensus 165 s~Sgd~~l~lwdvr~~---------gk~-~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~ 234 (311)
T KOG0277|consen 165 SASGDGTLRLWDVRSP---------GKF-MSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHG 234 (311)
T ss_pred EccCCceEEEEEecCC---------Cce-eEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCc
Confidence 9999999999999853 223 33778999999999998 7789999999999999999875 4678899999
Q ss_pred CCeEEEEEccCC-CEEEEeeCCCcEEEEeCCC-CceeEEeecCCCcEEEEEEEe-CCCEEEEEeCCCcEEEEEC
Q 004214 423 RGIWSVEFSPVD-QVVITASGDKTIKIWSISD-GSCLKTFEGHTSSVLRASFLT-RGAQIVSCGADGLVKLWTV 493 (768)
Q Consensus 423 ~~v~~v~~s~~~-~~l~t~~~d~~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~ 493 (768)
-.|..+.|||.. .+|++++.|-++||||... ..++.+...|+..+..+.|++ ++.++++++.|+.++||+.
T Consensus 235 ~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 235 LAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred eEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 999999999964 7899999999999999874 457778888999999999987 5679999999999999984
No 77
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=5.3e-31 Score=243.42 Aligned_cols=288 Identities=22% Similarity=0.403 Sum_probs=230.0
Q ss_pred EEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 004214 23 THYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWD 102 (768)
Q Consensus 23 ~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd 102 (768)
+..|.||...|.|++=+|. +...+|||+.||.|+|||+....++.++..|.+.|..|++.. ..++++|.|.+|+.|.
T Consensus 59 v~~L~gHrdGV~~lakhp~-~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPN-KLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWK 135 (433)
T ss_pred hhhccccccccchhhcCcc-hhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeee
Confidence 5678999999999999996 335599999999999999999999999999999999999986 6789999999999997
Q ss_pred CCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceee
Q 004214 103 LRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTI 182 (768)
Q Consensus 103 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~ 182 (768)
+... +..++.
T Consensus 136 ~~~~-p~~til--------------------------------------------------------------------- 145 (433)
T KOG0268|consen 136 IDGP-PLHTIL--------------------------------------------------------------------- 145 (433)
T ss_pred ccCC-cceeee---------------------------------------------------------------------
Confidence 6431 000000
Q ss_pred cccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCC
Q 004214 183 SFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIE 262 (768)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~ 262 (768)
T Consensus 146 -------------------------------------------------------------------------------- 145 (433)
T KOG0268|consen 146 -------------------------------------------------------------------------------- 145 (433)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcE
Q 004214 263 QVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNF 342 (768)
Q Consensus 263 ~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 342 (768)
....+..++ ....+. .++|++. .|.|||.....++..+.--...|.++.|+|....+
T Consensus 146 ------------------g~s~~~gId--h~~~~~-~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsI 202 (433)
T KOG0268|consen 146 ------------------GKSVYLGID--HHRKNS-VFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSI 202 (433)
T ss_pred ------------------ccccccccc--cccccc-cccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchh
Confidence 000111111 112222 3777765 48999999888999988888999999999998889
Q ss_pred EEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC-ceEEEEecc
Q 004214 343 LVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDL-VSVVTFRGH 421 (768)
Q Consensus 343 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~ 421 (768)
|++++.|++|.+||++........ .....-+.++|+|.+-.+++|+.|..++.||++.. .++....+|
T Consensus 203 Las~~sDrsIvLyD~R~~~Pl~KV-----------i~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dh 271 (433)
T KOG0268|consen 203 LASCASDRSIVLYDLRQASPLKKV-----------ILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDH 271 (433)
T ss_pred eeeeccCCceEEEecccCCcccee-----------eeeccccceecCccccceeeccccccceehhhhhhcccchhhccc
Confidence 999999999999999965422111 11234578999998889999999999999999876 567788999
Q ss_pred CCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeec-CCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCe
Q 004214 422 KRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEG-HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE 497 (768)
Q Consensus 422 ~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~ 497 (768)
...|.+++|||.|+-+++||.|.+|+||..+.+.....+.. --..|.++.||.|.+|+++|+.|+.|++|.....+
T Consensus 272 vsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Ase 348 (433)
T KOG0268|consen 272 VSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASE 348 (433)
T ss_pred ceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhh
Confidence 99999999999999999999999999999987754433321 22468999999999999999999999999765444
No 78
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=8.4e-31 Score=238.09 Aligned_cols=287 Identities=20% Similarity=0.313 Sum_probs=243.6
Q ss_pred cCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEec--------CccceeEEEEEcCCCCEEEEEeCCCeEE
Q 004214 28 GHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLD--------KHFSRVTSMAITSDGSTLISAGRDKVVN 99 (768)
Q Consensus 28 gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~--------~h~~~V~~l~fs~d~~~L~s~~~dg~i~ 99 (768)
|....+.|..|||||++ |++|+.||.|.|||..+|+....++ -+..+|.|+.||.|...|++|+.||.|+
T Consensus 211 g~KSh~EcA~FSPDgqy--LvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIK 288 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQY--LVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIK 288 (508)
T ss_pred ccccchhheeeCCCCce--EeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEE
Confidence 45677899999999998 9999999999999999998765543 3778999999999999999999999999
Q ss_pred EEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCc
Q 004214 100 LWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSD 179 (768)
Q Consensus 100 vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~ 179 (768)
+|.+++|.|+..+..
T Consensus 289 vWri~tG~ClRrFdr----------------------------------------------------------------- 303 (508)
T KOG0275|consen 289 VWRIETGQCLRRFDR----------------------------------------------------------------- 303 (508)
T ss_pred EEEEecchHHHHhhh-----------------------------------------------------------------
Confidence 999999988766531
Q ss_pred eeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEe
Q 004214 180 VTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVAT 259 (768)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 259 (768)
.|...|+++.|+. ++..+.+++
T Consensus 304 ---------------------------------------------------------AHtkGvt~l~FSr-D~SqiLS~s 325 (508)
T KOG0275|consen 304 ---------------------------------------------------------AHTKGVTCLSFSR-DNSQILSAS 325 (508)
T ss_pred ---------------------------------------------------------hhccCeeEEEEcc-Ccchhhccc
Confidence 2334556666663 556677788
Q ss_pred CCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeec--ccCcEEEEEEec
Q 004214 260 NIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTG--HMGAVGAVAFSK 337 (768)
Q Consensus 260 ~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~~~ 337 (768)
.|..+++.-+.+|+++..+.+|.+.|+... +.++|.. +++++.||+|++|+..+.+++.+++. ...+|.++...|
T Consensus 326 fD~tvRiHGlKSGK~LKEfrGHsSyvn~a~--ft~dG~~-iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~P 402 (508)
T KOG0275|consen 326 FDQTVRIHGLKSGKCLKEFRGHSSYVNEAT--FTDDGHH-IISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLP 402 (508)
T ss_pred ccceEEEeccccchhHHHhcCccccccceE--EcCCCCe-EEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcC
Confidence 889999999999999999999999999987 7777776 99999999999999999999988874 456788898989
Q ss_pred CCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEE
Q 004214 338 KLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVT 417 (768)
Q Consensus 338 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 417 (768)
.++..++++...++|.+.++.+.- .+....-....+...+.+.+|.|.++.+.+.|+.++.|...+|+.-.+
T Consensus 403 Knpeh~iVCNrsntv~imn~qGQv--------VrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~t 474 (508)
T KOG0275|consen 403 KNPEHFIVCNRSNTVYIMNMQGQV--------VRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERT 474 (508)
T ss_pred CCCceEEEEcCCCeEEEEeccceE--------EeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeee
Confidence 888899999999999999986421 011111122345677788999999999999999999999999999999
Q ss_pred EeccCCCeEEEEEccCCCEEEEeeCCCcEEEEe
Q 004214 418 FRGHKRGIWSVEFSPVDQVVITASGDKTIKIWS 450 (768)
Q Consensus 418 ~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd 450 (768)
+..|...+..++-+|..++||+-++||.+++|.
T Consensus 475 l~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 475 LPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred eecccccccccccCcccchhhhhcccchhhhcC
Confidence 999999999999999999999999999999994
No 79
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=6.2e-29 Score=249.74 Aligned_cols=271 Identities=21% Similarity=0.369 Sum_probs=240.7
Q ss_pred CCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeec-ccCc
Q 004214 251 EEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTG-HMGA 329 (768)
Q Consensus 251 ~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~ 329 (768)
..+.+++|.. ..|++|+..++........+...|+++. +.++|.. |++|..+|.|.|||..+.+.+..+.+ |...
T Consensus 187 s~n~laValg-~~vylW~~~s~~v~~l~~~~~~~vtSv~--ws~~G~~-LavG~~~g~v~iwD~~~~k~~~~~~~~h~~r 262 (484)
T KOG0305|consen 187 SANVLAVALG-QSVYLWSASSGSVTELCSFGEELVTSVK--WSPDGSH-LAVGTSDGTVQIWDVKEQKKTRTLRGSHASR 262 (484)
T ss_pred cCCeEEEEec-ceEEEEecCCCceEEeEecCCCceEEEE--ECCCCCE-EEEeecCCeEEEEehhhccccccccCCcCce
Confidence 4457777765 7899999999998777777789999998 6677776 99999999999999999999999888 9999
Q ss_pred EEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeC
Q 004214 330 VGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRL 409 (768)
Q Consensus 330 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~ 409 (768)
|.+++|... .+.+|+.|+.|..+|++.... ......+|...|..+.|+++++++|+|+.|+.+.|||.
T Consensus 263 vg~laW~~~---~lssGsr~~~I~~~dvR~~~~---------~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~ 330 (484)
T KOG0305|consen 263 VGSLAWNSS---VLSSGSRDGKILNHDVRISQH---------VVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDG 330 (484)
T ss_pred eEEEeccCc---eEEEecCCCcEEEEEEecchh---------hhhhhhcccceeeeeEECCCCCeeccCCCccceEeccC
Confidence 999999943 799999999999999986432 11136789999999999999999999999999999999
Q ss_pred CCCceEEEEeccCCCeEEEEEccC-CCEEEEee--CCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEe--C
Q 004214 410 PDLVSVVTFRGHKRGIWSVEFSPV-DQVVITAS--GDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCG--A 484 (768)
Q Consensus 410 ~~~~~~~~~~~~~~~v~~v~~s~~-~~~l~t~~--~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~--~ 484 (768)
....+...+..|...|.+++|+|- ..+||+|+ .|+.|++||..+|..+..+. -...|..+.|++..+.|+++. .
T Consensus 331 ~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s 409 (484)
T KOG0305|consen 331 LSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYS 409 (484)
T ss_pred CCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCC
Confidence 999999999999999999999995 57888875 59999999999999998887 567899999999998777654 3
Q ss_pred CCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCH
Q 004214 485 DGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTA 538 (768)
Q Consensus 485 dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~ 538 (768)
++.|.||+..+.+.+..+.+|..+|..++++|||..+++|+.|.++++|++-+.
T Consensus 410 ~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 410 ENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 668999999999999999999999999999999999999999999999998764
No 80
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.6e-29 Score=229.27 Aligned_cols=332 Identities=24% Similarity=0.410 Sum_probs=253.2
Q ss_pred EEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEE
Q 004214 21 FCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNL 100 (768)
Q Consensus 21 ~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~v 100 (768)
+.++.|.||.+.|+.++... ..+++.+++.|.+.+||.+++|.|+.++.||.+.|.++.|++.+.++++++.|++-.|
T Consensus 139 ~lvre~~GHkDGiW~Vaa~~--tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHI 216 (481)
T KOG0300|consen 139 RLVRELEGHKDGIWHVAADS--TQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHI 216 (481)
T ss_pred eehhhhcccccceeeehhhc--CCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHH
Confidence 34667889999999998865 4457999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCce
Q 004214 101 WDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDV 180 (768)
Q Consensus 101 Wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~ 180 (768)
|...-.-.+ |.... |.+. ..+.
T Consensus 217 W~~av~~~v---P~~~a-------~~~h------------------------------------------------SsEe 238 (481)
T KOG0300|consen 217 WKAAVNWEV---PSNNA-------PSDH------------------------------------------------SSEE 238 (481)
T ss_pred HHHhhcCcC---CCCCC-------CCCC------------------------------------------------Cchh
Confidence 974211100 00000 0000 0000
Q ss_pred eecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeC
Q 004214 181 TISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATN 260 (768)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~ 260 (768)
.. ..++....+..- + ..+.
T Consensus 239 E~-----------------------------------------------------e~sDe~~~d~d~---~-----~~sD 257 (481)
T KOG0300|consen 239 EE-----------------------------------------------------EHSDEHNRDTDS---S-----EKSD 257 (481)
T ss_pred hh-----------------------------------------------------hccccccccccc---c-----cccC
Confidence 00 000000000000 0 0000
Q ss_pred CCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCC
Q 004214 261 IEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQ 340 (768)
Q Consensus 261 ~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 340 (768)
...|+ .++..+.+|...|.+.+ +...+.. +++++.|.+..+||++++.++..+.+|....+.++-+|. +
T Consensus 258 ~~tiR-------vPl~~ltgH~~vV~a~d--WL~gg~Q-~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHpt-Q 326 (481)
T KOG0300|consen 258 GHTIR-------VPLMRLTGHRAVVSACD--WLAGGQQ-MVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPT-Q 326 (481)
T ss_pred Cceee-------eeeeeeeccccceEehh--hhcCcce-eeeeeccccceeeeeccCceeccccCcchhccccccCCc-c
Confidence 01121 13446788999999887 6666665 999999999999999999999999999999999999998 5
Q ss_pred cEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCc-eEEEEe
Q 004214 341 NFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLV-SVVTFR 419 (768)
Q Consensus 341 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~ 419 (768)
.++++.+.|.+.++||++. .......+.+|...|++..|..+. .+++|+.|.+|++||+++.+ ++.+++
T Consensus 327 rLVvTsSrDtTFRLWDFRe---------aI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIR 396 (481)
T KOG0300|consen 327 RLVVTSSRDTTFRLWDFRE---------AIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIR 396 (481)
T ss_pred eEEEEeccCceeEeccchh---------hcceeeeecccccceeEEEEecCC-ceeecCCCceEEEeeeccccCcceeee
Confidence 5899999999999999983 455778899999999999999765 58899999999999998875 555665
Q ss_pred ccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEE-----eecCCCcEEEEEEEeCC--CEEEEEeCCCcEEEEE
Q 004214 420 GHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKT-----FEGHTSSVLRASFLTRG--AQIVSCGADGLVKLWT 492 (768)
Q Consensus 420 ~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~-----~~~~~~~v~~~~~s~~~--~~l~s~~~dg~i~iwd 492 (768)
...+++.++.+..+.+++.-..+..|++||+.. ..+.. -.+|..-|+|++|..+. .-|++++-|..+.-|.
T Consensus 397 -tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG-~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~ 474 (481)
T KOG0300|consen 397 -TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNG-NRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWK 474 (481)
T ss_pred -cCCccceeEeecCCceEEeccCCceEEEEecCC-CccccCCcccccccceeeeeeeccccCcccccccccccceeeeeE
Confidence 567899999999888999999999999999954 43333 34899999999998653 4688999999999998
Q ss_pred CCCC
Q 004214 493 VRTG 496 (768)
Q Consensus 493 ~~~~ 496 (768)
+...
T Consensus 475 in~p 478 (481)
T KOG0300|consen 475 INTP 478 (481)
T ss_pred eccc
Confidence 7653
No 81
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=6.5e-29 Score=239.11 Aligned_cols=282 Identities=19% Similarity=0.338 Sum_probs=248.0
Q ss_pred ccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEEC
Q 004214 190 KRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDL 269 (768)
Q Consensus 190 ~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~ 269 (768)
...+..++|+|....-++++..-.+.+|+..... ..+.+..+...+.++.|-. ++.++|+|...|.|++||.
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~-------~~k~~srFk~~v~s~~fR~-DG~LlaaGD~sG~V~vfD~ 97 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRS-------VRKTFSRFKDVVYSVDFRS-DGRLLAAGDESGHVKVFDM 97 (487)
T ss_pred cCcceeEecCCCCCCceEEecccEEEEEecchhh-------hhhhHHhhccceeEEEeec-CCeEEEccCCcCcEEEecc
Confidence 3678899999999999999999999999876432 3344566777888888874 8899999999999999998
Q ss_pred CCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCC
Q 004214 270 SSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSD 349 (768)
Q Consensus 270 ~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d 349 (768)
.+...++.+..|+.++..+. |.+.++.++++|+.|+.+++||+.+......+.+|++.|.|.+|+|...+++++|+.|
T Consensus 98 k~r~iLR~~~ah~apv~~~~--f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYD 175 (487)
T KOG0310|consen 98 KSRVILRQLYAHQAPVHVTK--FSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYD 175 (487)
T ss_pred ccHHHHHHHhhccCceeEEE--ecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCC
Confidence 88788889999999999998 7788888899999999999999999988778999999999999999988899999999
Q ss_pred CeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCc-eEEEEeccCCCeEEE
Q 004214 350 HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLV-SVVTFRGHKRGIWSV 428 (768)
Q Consensus 350 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~v~~v 428 (768)
|.|++||.+.. ........|+.+|..+.+-|.|..+++++. ..|++||+.+|. .+..+..|...|+|+
T Consensus 176 g~vrl~DtR~~----------~~~v~elnhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL 244 (487)
T KOG0310|consen 176 GKVRLWDTRSL----------TSRVVELNHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCL 244 (487)
T ss_pred ceEEEEEeccC----------CceeEEecCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEE
Confidence 99999999843 244455679999999999999999999875 579999998654 445555599999999
Q ss_pred EEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEEC
Q 004214 429 EFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTV 493 (768)
Q Consensus 429 ~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 493 (768)
++..++..|++|+-|+.|++||+.+.+.+..+. ..++|.+++.+|++..++.|..||.+.+-+.
T Consensus 245 ~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~rr~ 308 (487)
T KOG0310|consen 245 RLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRR 308 (487)
T ss_pred EeecCCceEeecccccceEEEEccceEEEEeee-cccceeeEEecCCCceEEEecccceeeeehh
Confidence 999999999999999999999999999999887 7899999999999999999999998877643
No 82
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=4.6e-30 Score=241.36 Aligned_cols=282 Identities=23% Similarity=0.329 Sum_probs=241.8
Q ss_pred eecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCce--eeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEE
Q 004214 234 RLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMS--CSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRL 311 (768)
Q Consensus 234 ~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~--~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~i 311 (768)
.+..|.+++.++.|.+ +...|++|+.|..|.+|+....+ ...++.+..++++.++ +.+++.. +++++.|+.+++
T Consensus 170 ~ld~h~gev~~v~~l~-~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d--~d~~~~~-~iAas~d~~~r~ 245 (459)
T KOG0288|consen 170 VLDAHEGEVHDVEFLR-NSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSID--FDSDNKH-VIAASNDKNLRL 245 (459)
T ss_pred hhhccccccceeEEcc-CcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceee--ecCCCce-EEeecCCCceee
Confidence 3556788899999984 66799999999999999988776 6678889999999998 8888877 888899999999
Q ss_pred EeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccC
Q 004214 312 WDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN 391 (768)
Q Consensus 312 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 391 (768)
|++...+...++.+|++.|+++.|..... .+++|+.|.+|+.||+....... .+ -....+..|..+
T Consensus 246 Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~-~vVsgs~DRtiK~WDl~k~~C~k----------t~-l~~S~cnDI~~~-- 311 (459)
T KOG0288|consen 246 WNVDSLRLRHTLSGHTDKVTAAKFKLSHS-RVVSGSADRTIKLWDLQKAYCSK----------TV-LPGSQCNDIVCS-- 311 (459)
T ss_pred eeccchhhhhhhcccccceeeehhhcccc-ceeeccccchhhhhhhhhhheec----------cc-cccccccceEec--
Confidence 99999999999999999999999988744 49999999999999998532211 11 112344555555
Q ss_pred CCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecC----CCcE
Q 004214 392 DSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGH----TSSV 467 (768)
Q Consensus 392 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~----~~~v 467 (768)
+..+++|-.|++|++||.++..+......+. .|+++..++++..|.+++.|.++.+.|+++......+.+. ....
T Consensus 312 ~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDw 390 (459)
T KOG0288|consen 312 ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDW 390 (459)
T ss_pred ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeecccccccccc
Confidence 5678899999999999999999999988765 9999999999999999999999999999999888887632 2348
Q ss_pred EEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCc--EEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004214 468 LRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDK--IWALAVGKKTEMFATGGSDALVNLWH 534 (768)
Q Consensus 468 ~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~--v~~l~~s~~~~~l~s~~~dg~v~vw~ 534 (768)
+.+.|||++.|+++|+.||.|+||++.++++...+...... |++++|+|.|..|++++.++.+.+|.
T Consensus 391 trvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 391 TRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred ceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 89999999999999999999999999999999888765554 99999999999999999999999993
No 83
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.5e-27 Score=218.04 Aligned_cols=292 Identities=18% Similarity=0.303 Sum_probs=231.4
Q ss_pred eeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccee-EeeEEecCCCCCccccccccchhhhh
Q 004214 65 KCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEM-VEAVCAIPPGSAFDSFLSSYNQQTIK 143 (768)
Q Consensus 65 ~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (768)
++.+.|..-.+.|.++.|+++|.+|++++.|.++++||..+++.+.++..... +..++
T Consensus 5 ~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~--------------------- 63 (311)
T KOG1446|consen 5 RPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLAC--------------------- 63 (311)
T ss_pred ccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEE---------------------
Confidence 34455665677899999999999999999999999999999988877754321 22222
Q ss_pred cccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCc
Q 004214 144 KKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVP 223 (768)
Q Consensus 144 ~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~ 223 (768)
T Consensus 64 -------------------------------------------------------------------------------- 63 (311)
T KOG1446|consen 64 -------------------------------------------------------------------------------- 63 (311)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeC--CCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEE
Q 004214 224 EKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATN--IEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIV 301 (768)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~--~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~ 301 (768)
|.... ..++.++. |..|+..++.+.+.++.+.||...|..+. ..|.+.. ++
T Consensus 64 -----------------------Fth~~-~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~--~sP~~d~-Fl 116 (311)
T KOG1446|consen 64 -----------------------FTHHS-NTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLS--VSPKDDT-FL 116 (311)
T ss_pred -----------------------EecCC-ceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEE--ecCCCCe-EE
Confidence 22111 12222222 67899999999999999999999999998 6677765 99
Q ss_pred EEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCC
Q 004214 302 TGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGK 381 (768)
Q Consensus 302 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (768)
+++.|++|++||++..++...+..... ..++|.|.|- ++|++.....|++||++.....+....... .....
T Consensus 117 S~S~D~tvrLWDlR~~~cqg~l~~~~~--pi~AfDp~GL-ifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~-----~~~~~ 188 (311)
T KOG1446|consen 117 SSSLDKTVRLWDLRVKKCQGLLNLSGR--PIAAFDPEGL-IFALANGSELIKLYDLRSFDKGPFTTFSIT-----DNDEA 188 (311)
T ss_pred ecccCCeEEeeEecCCCCceEEecCCC--cceeECCCCc-EEEEecCCCeEEEEEecccCCCCceeEccC-----CCCcc
Confidence 999999999999998877776654433 4578999965 777777777999999997644332221111 13456
Q ss_pred CeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCe---EEEEEccCCCEEEEeeCCCcEEEEeCCCCceeE
Q 004214 382 DINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGI---WSVEFSPVDQVVITASGDKTIKIWSISDGSCLK 458 (768)
Q Consensus 382 ~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v---~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~ 458 (768)
..+.+.|||||+.++.++..+.+++.|.-+|....++.++...- -..+|+||++++++|+.||+|.+|++++|..+.
T Consensus 189 ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~ 268 (311)
T KOG1446|consen 189 EWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVA 268 (311)
T ss_pred ceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEee
Confidence 78999999999999999999999999999999999988876543 578899999999999999999999999999999
Q ss_pred Eeec-CCCcEEEEEEEeCCCEEEEEeCCCcEEEEECC
Q 004214 459 TFEG-HTSSVLRASFLTRGAQIVSCGADGLVKLWTVR 494 (768)
Q Consensus 459 ~~~~-~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 494 (768)
.+.+ +..++.++.|+|.-..+++++ ..+.+|=..
T Consensus 269 ~~~~~~~~~~~~~~fnP~~~mf~sa~--s~l~fw~p~ 303 (311)
T KOG1446|consen 269 VLRGPNGGPVSCVRFNPRYAMFVSAS--SNLVFWLPD 303 (311)
T ss_pred EecCCCCCCccccccCCceeeeeecC--ceEEEEecc
Confidence 9998 689999999999877777664 568888654
No 84
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=5.6e-29 Score=256.23 Aligned_cols=209 Identities=26% Similarity=0.403 Sum_probs=174.7
Q ss_pred ceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCe
Q 004214 272 MSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHT 351 (768)
Q Consensus 272 ~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~ 351 (768)
.+++..+.||.+.|..+. |+.++ +|++++.|.+|++|++....++..|. |..-|+|++|+|...++|++|+-||.
T Consensus 359 ekP~~ef~GHt~DILDlS---WSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~K 433 (712)
T KOG0283|consen 359 EKPFCEFKGHTADILDLS---WSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGK 433 (712)
T ss_pred ccchhhhhccchhheecc---cccCC-eeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeecccccc
Confidence 345668899999999995 34444 49999999999999999999999886 99999999999999999999999999
Q ss_pred EEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEec--c------CC
Q 004214 352 IKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG--H------KR 423 (768)
Q Consensus 352 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~------~~ 423 (768)
++||++... .......-..-|++++|.|+|+..++|+.+|.+++|+....+......- | ..
T Consensus 434 vRiWsI~d~-----------~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~ 502 (712)
T KOG0283|consen 434 VRLWSISDK-----------KVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGK 502 (712)
T ss_pred eEEeecCcC-----------eeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCc
Confidence 999999743 2222233347899999999999999999999999999998877655432 1 23
Q ss_pred CeEEEEEccCC-CEEEEeeCCCcEEEEeCCCCceeEEeecCCC--cEEEEEEEeCCCEEEEEeCCCcEEEEECCCC
Q 004214 424 GIWSVEFSPVD-QVVITASGDKTIKIWSISDGSCLKTFEGHTS--SVLRASFLTRGAQIVSCGADGLVKLWTVRTG 496 (768)
Q Consensus 424 ~v~~v~~s~~~-~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 496 (768)
.|+.+.|.|.. ..+++.+.|..|||||+++..++..|+|+.. .-....|+.||++|+++++|..|++|+....
T Consensus 503 rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 503 RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSF 578 (712)
T ss_pred eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCC
Confidence 79999999854 3477777899999999999999999997654 3456789999999999999999999998543
No 85
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.97 E-value=8.1e-29 Score=239.14 Aligned_cols=304 Identities=20% Similarity=0.291 Sum_probs=232.1
Q ss_pred EEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCC----eeEEEecC-ccceeEEEEEcCCCCEEEEEeCCCe
Q 004214 23 THYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK----KCVATLDK-HFSRVTSMAITSDGSTLISAGRDKV 97 (768)
Q Consensus 23 ~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~----~~~~~l~~-h~~~V~~l~fs~d~~~L~s~~~dg~ 97 (768)
--.|++|+..|+++++.|.|.+ ++||+.|.+|++||+... +..+.+.. ....|.+++|++.|..|++.+....
T Consensus 160 Ei~l~hgtk~Vsal~~Dp~GaR--~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aq 237 (641)
T KOG0772|consen 160 EIQLKHGTKIVSALAVDPSGAR--FVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQ 237 (641)
T ss_pred eEeccCCceEEEEeeecCCCce--eeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcc
Confidence 4568899999999999999998 999999999999998643 22333432 3457999999999999998888888
Q ss_pred EEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecC
Q 004214 98 VNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKS 177 (768)
Q Consensus 98 i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~ 177 (768)
.+++|-...+......
T Consensus 238 akl~DRdG~~~~e~~K---------------------------------------------------------------- 253 (641)
T KOG0772|consen 238 AKLLDRDGFEIVEFSK---------------------------------------------------------------- 253 (641)
T ss_pred eeEEccCCceeeeeec----------------------------------------------------------------
Confidence 8888754332211111
Q ss_pred CceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEE
Q 004214 178 SDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAV 257 (768)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~ 257 (768)
T Consensus 254 -------------------------------------------------------------------------------- 253 (641)
T KOG0772|consen 254 -------------------------------------------------------------------------------- 253 (641)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCc-eEEEeee-----cccCcEE
Q 004214 258 ATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR-CCVGVGT-----GHMGAVG 331 (768)
Q Consensus 258 ~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~-----~~~~~v~ 331 (768)
|.-+|-|+. ...||...++|.+ |.|..+..+++++.||++++||+... +.+.+++ +..-+++
T Consensus 254 ----GDQYI~Dm~------nTKGHia~lt~g~--whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~t 321 (641)
T KOG0772|consen 254 ----GDQYIRDMY------NTKGHIAELTCGC--WHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVT 321 (641)
T ss_pred ----cchhhhhhh------ccCCceeeeeccc--cccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCce
Confidence 111111111 2346666677765 66776666888888888888887653 2233332 3345789
Q ss_pred EEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCC--CeEEEEEccCCCEEEEEeCCCcEEEEeC
Q 004214 332 AVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGK--DINSLAVAPNDSLVCTGSQDRTACVWRL 409 (768)
Q Consensus 332 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~s~~~~~l~~~~~dg~i~i~d~ 409 (768)
.++|+++++ ++++|+.||+|.+|+..... ......+..+|.. .|+|++||++|++|++-+.|+++++||+
T Consensus 322 sC~~nrdg~-~iAagc~DGSIQ~W~~~~~~-------v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDL 393 (641)
T KOG0772|consen 322 SCAWNRDGK-LIAAGCLDGSIQIWDKGSRT-------VRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDL 393 (641)
T ss_pred eeecCCCcc-hhhhcccCCceeeeecCCcc-------cccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeec
Confidence 999999987 69999999999999985432 2224455567877 9999999999999999999999999999
Q ss_pred CCCc-eEEEEec--cCCCeEEEEEccCCCEEEEeeC------CCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEE
Q 004214 410 PDLV-SVVTFRG--HKRGIWSVEFSPVDQVVITASG------DKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIV 480 (768)
Q Consensus 410 ~~~~-~~~~~~~--~~~~v~~v~~s~~~~~l~t~~~------d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 480 (768)
+..+ ++.+..+ ...+-+.++|||+.++|++|.. .|++.+||..+...+.++.-....|..+.|+|.=+.|+
T Consensus 394 rq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~ 473 (641)
T KOG0772|consen 394 RQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIF 473 (641)
T ss_pred cccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhhee
Confidence 8764 4444443 2345688999999999999864 57899999999999999988889999999999999999
Q ss_pred EEeCCCcEEEEE
Q 004214 481 SCGADGLVKLWT 492 (768)
Q Consensus 481 s~~~dg~i~iwd 492 (768)
.|+.||+++||=
T Consensus 474 ~gsgdG~~~vyY 485 (641)
T KOG0772|consen 474 AGSGDGTAHVYY 485 (641)
T ss_pred eecCCCceEEEE
Confidence 999999999873
No 86
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=8.2e-30 Score=239.69 Aligned_cols=284 Identities=25% Similarity=0.415 Sum_probs=236.3
Q ss_pred EEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCe--eEEEecCccceeEEEEEcCCCCEEEEEeCCCeEE
Q 004214 22 CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK--CVATLDKHFSRVTSMAITSDGSTLISAGRDKVVN 99 (768)
Q Consensus 22 ~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~--~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~ 99 (768)
+...+..|.+.|..+.|-++... |++|+.|..|++|++..++ .+.+|.|..++|+++.|.++++++++++.|+.++
T Consensus 167 ~~~~ld~h~gev~~v~~l~~sdt--latgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r 244 (459)
T KOG0288|consen 167 ALFVLDAHEGEVHDVEFLRNSDT--LATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLR 244 (459)
T ss_pred hhhhhhccccccceeEEccCcch--hhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCcee
Confidence 44567789999999999998777 9999999999999997766 6788888999999999999999999999999999
Q ss_pred EEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCc
Q 004214 100 LWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSD 179 (768)
Q Consensus 100 vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~ 179 (768)
+|++.+++..
T Consensus 245 ~Wnvd~~r~~---------------------------------------------------------------------- 254 (459)
T KOG0288|consen 245 LWNVDSLRLR---------------------------------------------------------------------- 254 (459)
T ss_pred eeeccchhhh----------------------------------------------------------------------
Confidence 9987654321
Q ss_pred eeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEe
Q 004214 180 VTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVAT 259 (768)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 259 (768)
T Consensus 255 -------------------------------------------------------------------------------- 254 (459)
T KOG0288|consen 255 -------------------------------------------------------------------------------- 254 (459)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCC
Q 004214 260 NIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKL 339 (768)
Q Consensus 260 ~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 339 (768)
.++.+|++.|+++. +...... +++|+.|.+|++||+....+..++- ....+..++.++.
T Consensus 255 ----------------~TLsGHtdkVt~ak--~~~~~~~-vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~~~- 313 (459)
T KOG0288|consen 255 ----------------HTLSGHTDKVTAAK--FKLSHSR-VVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCSIS- 313 (459)
T ss_pred ----------------hhhcccccceeeeh--hhccccc-eeeccccchhhhhhhhhhheecccc-ccccccceEecce-
Confidence 24556777777775 4343433 9999999999999999988776654 3345566666533
Q ss_pred CcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEe
Q 004214 340 QNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFR 419 (768)
Q Consensus 340 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 419 (768)
.+++|..|+.|++||++... .......+ +.|+++..+++|..+.+++.|.++.+.|+++......+.
T Consensus 314 --~~~SgH~DkkvRfwD~Rs~~----------~~~sv~~g-g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~s 380 (459)
T KOG0288|consen 314 --DVISGHFDKKVRFWDIRSAD----------KTRSVPLG-GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFS 380 (459)
T ss_pred --eeeecccccceEEEeccCCc----------eeeEeecC-cceeeEeeccCCeEEeeecCCCceeeeecccccEEEEee
Confidence 68999999999999998542 33343444 489999999999999999999999999999998887776
Q ss_pred cc----CCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCC--cEEEEEEEeCCCEEEEEeCCCcEEEE
Q 004214 420 GH----KRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTS--SVLRASFLTRGAQIVSCGADGLVKLW 491 (768)
Q Consensus 420 ~~----~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~s~~~dg~i~iw 491 (768)
.. ....+.+.|||++.|+++|+.||.|+||++.++++...+..... .|+++.|+|.|..|++++.++.+.+|
T Consensus 381 A~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 381 AEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred ccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 42 23488999999999999999999999999999999998886554 49999999999999999999999999
No 87
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=9.4e-30 Score=231.27 Aligned_cols=282 Identities=21% Similarity=0.364 Sum_probs=246.5
Q ss_pred ccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeee--------eeCCccceEEEeeeeecCCCEEEEEEeCCCe
Q 004214 237 GYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYV--------LAGHSEIVLCLDTCALSSGKILIVTGSKDNS 308 (768)
Q Consensus 237 ~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~--------~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~ 308 (768)
|..+.+-|..|+ |++++|++|+-||.|.+||..+|+.... +.-+..+|.|+. |+.+.. ++++|+.||.
T Consensus 211 g~KSh~EcA~FS-PDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~--FSRDsE-MlAsGsqDGk 286 (508)
T KOG0275|consen 211 GQKSHVECARFS-PDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCIS--FSRDSE-MLASGSQDGK 286 (508)
T ss_pred ccccchhheeeC-CCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEe--ecccHH-HhhccCcCCc
Confidence 445556666666 6999999999999999999999876543 345788999997 666555 5999999999
Q ss_pred EEEEeCCCceEEEeee-cccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEE
Q 004214 309 VRLWDSESRCCVGVGT-GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLA 387 (768)
Q Consensus 309 i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 387 (768)
|++|.+.+|.+++.+. .|+..|+|+.|+.++. .+++++.|.++++--+.. .+....+.+|.+.|+...
T Consensus 287 IKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~S-qiLS~sfD~tvRiHGlKS----------GK~LKEfrGHsSyvn~a~ 355 (508)
T KOG0275|consen 287 IKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNS-QILSASFDQTVRIHGLKS----------GKCLKEFRGHSSYVNEAT 355 (508)
T ss_pred EEEEEEecchHHHHhhhhhccCeeEEEEccCcc-hhhcccccceEEEecccc----------chhHHHhcCccccccceE
Confidence 9999999999999887 8999999999999977 689999999999998874 446667789999999999
Q ss_pred EccCCCEEEEEeCCCcEEEEeCCCCceEEEEec--cCCCeEEEEEccC-CCEEEEeeCCCcEEEEeCCCCceeEEeec--
Q 004214 388 VAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG--HKRGIWSVEFSPV-DQVVITASGDKTIKIWSISDGSCLKTFEG-- 462 (768)
Q Consensus 388 ~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~v~~v~~s~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~-- 462 (768)
|.++|..+++++.||+|++|+..+.+++.+++. ...+|.++-.-|. -..++++...++|.|-++ .|+.+++|..
T Consensus 356 ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~-qGQvVrsfsSGk 434 (508)
T KOG0275|consen 356 FTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM-QGQVVRSFSSGK 434 (508)
T ss_pred EcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEec-cceEEeeeccCC
Confidence 999999999999999999999999999988875 4457888887775 467888888899999998 6888888863
Q ss_pred -CCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004214 463 -HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 534 (768)
Q Consensus 463 -~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~ 534 (768)
..+...+.+.+|.|.++.+.+.|+.++.|.+.+|..-.++..|...|..++-+|..+.||+-++||.+++|.
T Consensus 435 REgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 435 REGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred ccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 234567788999999999999999999999999999999999999999999999999999999999999996
No 88
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.97 E-value=2.4e-28 Score=244.54 Aligned_cols=283 Identities=23% Similarity=0.364 Sum_probs=244.8
Q ss_pred eEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeee--eeeCCccceEE-EeeeeecCCCEEEEEEeC
Q 004214 229 LILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSY--VLAGHSEIVLC-LDTCALSSGKILIVTGSK 305 (768)
Q Consensus 229 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~--~~~~~~~~v~~-l~~~~~~~~~~~l~~~~~ 305 (768)
..+...+.||...|..++.. ++..++.++.||++++|+-...+.+. .+.+|.+.+.+ ++ +...++..+++|+.
T Consensus 4 Y~ls~~l~gH~~DVr~v~~~--~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~--y~e~~~~~l~~g~~ 79 (745)
T KOG0301|consen 4 YKLSHELEGHKSDVRAVAVT--DGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSIC--YAESDKGRLVVGGM 79 (745)
T ss_pred ceeEEEeccCccchheeEec--CCeEEeecCCCCceeeeeccCcccccceecccCcceeeccce--eccccCcceEeecc
Confidence 34567788999999888875 44588999999999999987665543 46777777766 44 54444445999999
Q ss_pred CCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEE
Q 004214 306 DNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINS 385 (768)
Q Consensus 306 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 385 (768)
|++|.+|...+..++..+.+|...|.++....++. +++||+|.++++|.... ......+|...|.+
T Consensus 80 D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~--~iSgSWD~TakvW~~~~------------l~~~l~gH~asVWA 145 (745)
T KOG0301|consen 80 DTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT--LISGSWDSTAKVWRIGE------------LVYSLQGHTASVWA 145 (745)
T ss_pred cceEEEEecCCCCchhhhhccccceeeeecCCcCc--eEecccccceEEecchh------------hhcccCCcchheee
Confidence 99999999999999999999999999999887754 89999999999998653 34447899999999
Q ss_pred EEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCC
Q 004214 386 LAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTS 465 (768)
Q Consensus 386 ~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~ 465 (768)
++.-|.+ .+++|+.|.+|++|.- ++.+.+|.+|...|+.+++-|++ .+++++.||.|++|++ +|.++.++.+|..
T Consensus 146 v~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~ghtn 220 (745)
T KOG0301|consen 146 VASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGHTN 220 (745)
T ss_pred eeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeeccce
Confidence 9999988 8999999999999985 77889999999999999999865 4778899999999999 8999999999999
Q ss_pred cEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 004214 466 SVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDST 537 (768)
Q Consensus 466 ~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~ 537 (768)
.|.++....++..++++++|++++||+.. +|.+.+..+...||++.+-++|. +++|++||.|+||....
T Consensus 221 ~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 221 FVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDK 289 (745)
T ss_pred EEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEecc
Confidence 99999988889999999999999999876 89999986666999999988886 67888999999998773
No 89
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.97 E-value=2e-28 Score=236.38 Aligned_cols=212 Identities=15% Similarity=0.226 Sum_probs=173.2
Q ss_pred eecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCC
Q 004214 323 GTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDR 402 (768)
Q Consensus 323 ~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg 402 (768)
.++|...++|.+|+|..+..+++++.||++++|++........ ........+..-++++++|+|+|++||+|+.||
T Consensus 264 TKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~q----Vik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DG 339 (641)
T KOG0772|consen 264 TKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQ----VIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDG 339 (641)
T ss_pred cCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhhee----EEeeccCCCcccCceeeecCCCcchhhhcccCC
Confidence 3689999999999999999999999999999999986532110 001111123445789999999999999999999
Q ss_pred cEEEEeCCCCc---eEEEEeccCC--CeEEEEEccCCCEEEEeeCCCcEEEEeCCCC-ceeEEeecC--CCcEEEEEEEe
Q 004214 403 TACVWRLPDLV---SVVTFRGHKR--GIWSVEFSPVDQVVITASGDKTIKIWSISDG-SCLKTFEGH--TSSVLRASFLT 474 (768)
Q Consensus 403 ~i~i~d~~~~~---~~~~~~~~~~--~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~-~~~~~~~~~--~~~v~~~~~s~ 474 (768)
.|.+|+..+.. ....-..|.. .|+|+.||++|++|++-+.|+++++||++.. +++....+- ..+-+.++|||
T Consensus 340 SIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSP 419 (641)
T KOG0772|consen 340 SIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSP 419 (641)
T ss_pred ceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCC
Confidence 99999975542 2233345776 8999999999999999999999999999875 566665543 33567899999
Q ss_pred CCCEEEEEeC------CCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCH
Q 004214 475 RGAQIVSCGA------DGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTA 538 (768)
Q Consensus 475 ~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~ 538 (768)
+.++|++|.. .|++.+||..+.+.+..+.-....|..+.|+|.-+.|.+|+.||.+++|-..+.
T Consensus 420 d~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp~~ 489 (641)
T KOG0772|consen 420 DDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYYDPNE 489 (641)
T ss_pred CceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEEECccc
Confidence 9999999865 568999999999999999888889999999999999999999999999876554
No 90
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=4.4e-29 Score=230.81 Aligned_cols=334 Identities=15% Similarity=0.246 Sum_probs=252.4
Q ss_pred EEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeE
Q 004214 230 ILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSV 309 (768)
Q Consensus 230 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i 309 (768)
+....+.||.+.|.+++-.|..-..+++|+.||.|++||+.+..+...+..|.+.|..+. +.. .. +++++.|.+|
T Consensus 57 PFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~--v~~--~~-~~tvgdDKtv 131 (433)
T KOG0268|consen 57 PFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGIC--VTQ--TS-FFTVGDDKTV 131 (433)
T ss_pred cchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEE--ecc--cc-eEEecCCcce
Confidence 445567899999999999887778999999999999999999999999999999999996 333 33 8999999999
Q ss_pred EEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEc
Q 004214 310 RLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVA 389 (768)
Q Consensus 310 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 389 (768)
+.|.+... +..++-+ .+.+..+.-+..+. .++++|. .|.|||.... .+...+.-....|.++.|+
T Consensus 132 K~wk~~~~-p~~tilg-~s~~~gIdh~~~~~-~FaTcGe--~i~IWD~~R~----------~Pv~smswG~Dti~svkfN 196 (433)
T KOG0268|consen 132 KQWKIDGP-PLHTILG-KSVYLGIDHHRKNS-VFATCGE--QIDIWDEQRD----------NPVSSMSWGADSISSVKFN 196 (433)
T ss_pred eeeeccCC-cceeeec-cccccccccccccc-cccccCc--eeeecccccC----------CccceeecCCCceeEEecC
Confidence 99987763 4444432 23455555554433 6788776 4899998733 2444444456779999999
Q ss_pred cC-CCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCC-ceeEEeecCCCcE
Q 004214 390 PN-DSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG-SCLKTFEGHTSSV 467 (768)
Q Consensus 390 ~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~-~~~~~~~~~~~~v 467 (768)
|. ...|++++.|+.|.+||+++..++..+. -...-+.++|+|..-.+++|++|..++.||++.- .++..+.+|.+.|
T Consensus 197 pvETsILas~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV 275 (433)
T KOG0268|consen 197 PVETSILASCASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAV 275 (433)
T ss_pred CCcchheeeeccCCceEEEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeE
Confidence 95 4577788899999999999998887655 3445678999998888999999999999999874 6788889999999
Q ss_pred EEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEec-cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCHHHHHHHHH
Q 004214 468 LRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD-KHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAEREEAFR 546 (768)
Q Consensus 468 ~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~ 546 (768)
+++.|||.|+-+++|+.|.+|+||.+..+..-..+. .....|.++.||-|.+++++||.|+.|++|...-.+.......
T Consensus 276 ~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Aseklgv~t~ 355 (433)
T KOG0268|consen 276 MDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKLGVITP 355 (433)
T ss_pred EEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhhcCCCCh
Confidence 999999999999999999999999998776544432 1235699999999999999999999999999876665443333
Q ss_pred HHHHHHHhhhHHHHhhcccchHHHHHHHhhcCCchhHHHH
Q 004214 547 KEEEAVLRGQELENAVLDADYTKAIQVAFELRRPHKLFEL 586 (768)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 586 (768)
.+++.....+.+..-.. .+.+...+|-+-.-|..++..
T Consensus 356 rEk~~~~Y~e~Lke~y~--~~peIkRIarHR~lPk~i~~a 393 (433)
T KOG0268|consen 356 REKNKLEYNEALKERYK--HLPEIKRIARHRHLPKPIKKA 393 (433)
T ss_pred hHHHHHHHHHHHHHHHh--hcHHHHHHHhhccCCHHHHHH
Confidence 33333333333322111 233444445554455544443
No 91
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=1.7e-28 Score=259.14 Aligned_cols=311 Identities=23% Similarity=0.343 Sum_probs=244.0
Q ss_pred CCCcEEEEEEeeCCCccEEEEEe--CCCcEEEEECCC------------CeeEEEecCccceeEEEEEcCCCCEEEEEeC
Q 004214 29 HKGVVSSILFHPDTDKSLLFSGS--DDATVRVWDLLA------------KKCVATLDKHFSRVTSMAITSDGSTLISAGR 94 (768)
Q Consensus 29 h~~~V~~l~~spd~~~~~l~sg~--~dg~I~iWd~~~------------~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~ 94 (768)
++..|.++..+|||.. +|||+ .||.++||+... .+.+.++..|.+.|+|+.|+|||+|||+|+.
T Consensus 12 ~~~~IfSIdv~pdg~~--~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSD 89 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVK--FATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSD 89 (942)
T ss_pred CCeeEEEEEecCCcee--EecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccC
Confidence 3557999999999998 99999 899999998642 3456777889999999999999999999999
Q ss_pred CCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeee
Q 004214 95 DKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYE 174 (768)
Q Consensus 95 dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~ 174 (768)
|+.|.||+.... . .+.
T Consensus 90 D~~v~iW~~~~~-~-----------------~~~---------------------------------------------- 105 (942)
T KOG0973|consen 90 DRLVMIWERAEI-G-----------------SGT---------------------------------------------- 105 (942)
T ss_pred cceEEEeeeccc-C-----------------Ccc----------------------------------------------
Confidence 999999986430 0 000
Q ss_pred ecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCE
Q 004214 175 QKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQY 254 (768)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 254 (768)
++++..
T Consensus 106 -------------------------------~fgs~g------------------------------------------- 111 (942)
T KOG0973|consen 106 -------------------------------VFGSTG------------------------------------------- 111 (942)
T ss_pred -------------------------------cccccc-------------------------------------------
Confidence 000000
Q ss_pred EEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEE
Q 004214 255 LAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVA 334 (768)
Q Consensus 255 l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~ 334 (768)
| .-+.+..++...+.+|...|..+. +.|++. ++++++.|++|.+||..+...+..+.+|.+.|..+.
T Consensus 112 -------~---~~~vE~wk~~~~l~~H~~DV~Dv~--Wsp~~~-~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs 178 (942)
T KOG0973|consen 112 -------G---AKNVESWKVVSILRGHDSDVLDVN--WSPDDS-LLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVS 178 (942)
T ss_pred -------c---ccccceeeEEEEEecCCCccceec--cCCCcc-EEEEecccceEEEEccccceeeeeeecccccccceE
Confidence 0 002344556668888999998887 666555 599999999999999999999999999999999999
Q ss_pred EecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeC----CCcEEEEeCC
Q 004214 335 FSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ----DRTACVWRLP 410 (768)
Q Consensus 335 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~----dg~i~i~d~~ 410 (768)
|.|-|+ +|++-+.|++|++|++.......... .......-...+..+.|||||.+|++... -.++.|.+-.
T Consensus 179 ~DP~Gk-y~ASqsdDrtikvwrt~dw~i~k~It----~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~ 253 (942)
T KOG0973|consen 179 WDPIGK-YFASQSDDRTLKVWRTSDWGIEKSIT----KPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERG 253 (942)
T ss_pred ECCccC-eeeeecCCceEEEEEcccceeeEeec----cchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecC
Confidence 999987 89999999999999976422111000 00000112345788999999999998643 2378899988
Q ss_pred CCceEEEEeccCCCeEEEEEccC-----CC------------EEEEeeCCCcEEEEeCCCCceeEEee-cCCCcEEEEEE
Q 004214 411 DLVSVVTFRGHKRGIWSVEFSPV-----DQ------------VVITASGDKTIKIWSISDGSCLKTFE-GHTSSVLRASF 472 (768)
Q Consensus 411 ~~~~~~~~~~~~~~v~~v~~s~~-----~~------------~l~t~~~d~~i~iwd~~~~~~~~~~~-~~~~~v~~~~~ 472 (768)
+.+.-..+-||..+++++.|+|. .. .+|+|+.|++|-||.....+++.... -...+|.+++|
T Consensus 254 tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsW 333 (942)
T KOG0973|consen 254 TWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSW 333 (942)
T ss_pred CceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeE
Confidence 88888999999999999999982 11 78999999999999997777765543 34678999999
Q ss_pred EeCCCEEEEEeCCCcEEEEECCCCe
Q 004214 473 LTRGAQIVSCGADGLVKLWTVRTGE 497 (768)
Q Consensus 473 s~~~~~l~s~~~dg~i~iwd~~~~~ 497 (768)
+|||..|+.++.||+|.++.+...+
T Consensus 334 spdG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 334 SPDGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred cCCCCeEEEEecCCeEEEEEcchHH
Confidence 9999999999999999999987543
No 92
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.96 E-value=6.2e-28 Score=228.37 Aligned_cols=282 Identities=20% Similarity=0.267 Sum_probs=242.2
Q ss_pred ceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEE
Q 004214 241 EILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCV 320 (768)
Q Consensus 241 ~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 320 (768)
.+..+...+. .+.+++|+.|..+.++|..+.+.+..+.||...|+.+. +.+... .+++++.|..|++|........
T Consensus 221 gi~ald~~~s-~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~--~~~~~~-~v~~aSad~~i~vws~~~~s~~ 296 (506)
T KOG0289|consen 221 GITALDIIPS-SSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVK--FHKDLD-TVITASADEIIRVWSVPLSSEP 296 (506)
T ss_pred CeeEEeecCC-CCcceecCCCCceEEEecchhhhhhhccCcceEEEEEE--eccchh-heeecCCcceEEeeccccccCc
Confidence 3445555544 67899999999999999999999999999999999986 555554 4999999999999999888888
Q ss_pred EeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeC
Q 004214 321 GVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ 400 (768)
Q Consensus 321 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 400 (768)
.....|..+|+.+..+|.|. ||++++.||+..+.|++.+.. ..........-.+++.+|+|||.+|.+|+.
T Consensus 297 ~~~~~h~~~V~~ls~h~tge-YllsAs~d~~w~Fsd~~~g~~--------lt~vs~~~s~v~~ts~~fHpDgLifgtgt~ 367 (506)
T KOG0289|consen 297 TSSRPHEEPVTGLSLHPTGE-YLLSASNDGTWAFSDISSGSQ--------LTVVSDETSDVEYTSAAFHPDGLIFGTGTP 367 (506)
T ss_pred cccccccccceeeeeccCCc-EEEEecCCceEEEEEccCCcE--------EEEEeeccccceeEEeeEcCCceEEeccCC
Confidence 88889999999999999977 899999999999999986521 111111123356899999999999999999
Q ss_pred CCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCC-CcEEEEEEEeCCCEE
Q 004214 401 DRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHT-SSVLRASFLTRGAQI 479 (768)
Q Consensus 401 dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l 479 (768)
||.++|||+.+...+..|.+|.++|.+++|+.+|-+|++++.|+.|++||++..+..+++.-.. ..+.++.|.+.|.+|
T Consensus 368 d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L 447 (506)
T KOG0289|consen 368 DGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYL 447 (506)
T ss_pred CceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeE
Confidence 9999999999999999999999999999999999999999999999999999988888876433 379999999999999
Q ss_pred EEEeCCCcEEEEEC--CCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 004214 480 VSCGADGLVKLWTV--RTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHD 535 (768)
Q Consensus 480 ~s~~~dg~i~iwd~--~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~ 535 (768)
+.++.|=+|++++- ++..++..+..|.+..+.+.|....++++++|.|..++++.+
T Consensus 448 ~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 448 GIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred EeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 99987767777663 356788888889999999999999999999999999988754
No 93
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=1e-28 Score=223.35 Aligned_cols=252 Identities=21% Similarity=0.306 Sum_probs=205.7
Q ss_pred eeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeee--cccCcEEEEEEecCCCcEEEEEeCCCe
Q 004214 274 CSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGT--GHMGAVGAVAFSKKLQNFLVSGSSDHT 351 (768)
Q Consensus 274 ~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~dg~ 351 (768)
.++++..|.+.|.++. |.|... +|++|+.|++|++||+......+.++ ....+|.++.|+|.|. +++.|..-.+
T Consensus 164 vIRTlYDH~devn~l~--FHPre~-ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGe-fllvgTdHp~ 239 (430)
T KOG0640|consen 164 VIRTLYDHVDEVNDLD--FHPRET-ILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGE-FLLVGTDHPT 239 (430)
T ss_pred eEeehhhccCccccee--ecchhh-eEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCc-eEEEecCCCc
Confidence 3457778999999997 666655 49999999999999997644333222 2457899999999977 8999999999
Q ss_pred EEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEec-cC-CCeEEEE
Q 004214 352 IKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG-HK-RGIWSVE 429 (768)
Q Consensus 352 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~-~~v~~v~ 429 (768)
+++||+...+.-. ....-..|...|+++.+++.|++.++|+.||.|++||--+++++.++.. |. ..|.+..
T Consensus 240 ~rlYdv~T~Qcfv-------sanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~ 312 (430)
T KOG0640|consen 240 LRLYDVNTYQCFV-------SANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAV 312 (430)
T ss_pred eeEEeccceeEee-------ecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEE
Confidence 9999998653211 1112356889999999999999999999999999999999988887753 54 4789999
Q ss_pred EccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCC-----CcEEEEEEEeCCCEEEEEeC-CCcEEEEECCCCeEEEEe-
Q 004214 430 FSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHT-----SSVLRASFLTRGAQIVSCGA-DGLVKLWTVRTGECIATY- 502 (768)
Q Consensus 430 ~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~-----~~v~~~~~s~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~- 502 (768)
|..+|+++++.+.|..+++|.+.+++++..+.|.. ..-+...|+....|++.-.+ .+.+.-||.+++..+..+
T Consensus 313 Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~s 392 (430)
T KOG0640|consen 313 FTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLS 392 (430)
T ss_pred EccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcc
Confidence 99999999999999999999999999999987542 22345667777778776655 568999999998765544
Q ss_pred ccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 004214 503 DKHEDKIWALAVGKKTEMFATGGSDALVNLWHDS 536 (768)
Q Consensus 503 ~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~ 536 (768)
-+|++.+..+.-||.+..+++|+.|...++|...
T Consensus 393 lgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 393 LGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred cCCCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence 3799999999999999999999999999999754
No 94
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.3e-28 Score=244.43 Aligned_cols=353 Identities=19% Similarity=0.324 Sum_probs=270.2
Q ss_pred EEEeecCCCcEEEEECCCCE------EEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCC--eeEEEecCc
Q 004214 2 FALLEGADRKVLVWDVDGGF------CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK--KCVATLDKH 73 (768)
Q Consensus 2 ~latg~~dg~i~vwd~~~~~------~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~--~~~~~l~~h 73 (768)
||.|||.||.|++|++.... +..++..|.+.|..++...+|+. |+++|.|.+|++|+...+ -++.++..|
T Consensus 39 yLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~t--lIS~SsDtTVK~W~~~~~~~~c~stir~H 116 (735)
T KOG0308|consen 39 YLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKT--LISASSDTTVKVWNAHKDNTFCMSTIRTH 116 (735)
T ss_pred eEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCc--eEEecCCceEEEeecccCcchhHhhhhcc
Confidence 79999999999999994322 46788899999999999999887 999999999999999877 688899999
Q ss_pred cceeEEEEE-cCCCCEEEEEeCCCeEEEEECCCCee--eeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcc
Q 004214 74 FSRVTSMAI-TSDGSTLISAGRDKVVNLWDLRDYSC--KLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLE 150 (768)
Q Consensus 74 ~~~V~~l~f-s~d~~~L~s~~~dg~i~vWd~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (768)
..-|.|+++ .++...+||||-|+.|.+||+.++.. +.++..
T Consensus 117 ~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~------------------------------------ 160 (735)
T KOG0308|consen 117 KDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNN------------------------------------ 160 (735)
T ss_pred cchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccc------------------------------------
Confidence 999999999 78888999999999999999987632 111100
Q ss_pred eEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeE
Q 004214 151 IHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELI 230 (768)
Q Consensus 151 ~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~ 230 (768)
..
T Consensus 161 ------------------------------------------------------------------------------~t 162 (735)
T KOG0308|consen 161 ------------------------------------------------------------------------------VT 162 (735)
T ss_pred ------------------------------------------------------------------------------cc
Confidence 00
Q ss_pred EEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEE
Q 004214 231 LSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVR 310 (768)
Q Consensus 231 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~ 310 (768)
......|+...|++++-.+ .+..++.|+..+.+++||..+...+..+.+|+..|.++. ...+|.. +++++.||+|+
T Consensus 163 ~~sl~sG~k~siYSLA~N~-t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll--~~dDGt~-~ls~sSDgtIr 238 (735)
T KOG0308|consen 163 VNSLGSGPKDSIYSLAMNQ-TGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLL--VNDDGTR-LLSASSDGTIR 238 (735)
T ss_pred cccCCCCCccceeeeecCC-cceEEEecCcccceEEeccccccceeeeeccccceEEEE--EcCCCCe-EeecCCCceEE
Confidence 0001114556677777653 557888899999999999999999999999999999996 5566665 99999999999
Q ss_pred EEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEcc
Q 004214 311 LWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP 390 (768)
Q Consensus 311 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 390 (768)
+||+...+++.++..|...|+++..+|+-. .+++|+.||.|..=|+++.. ..........+|..+..+.
T Consensus 239 lWdLgqQrCl~T~~vH~e~VWaL~~~~sf~-~vYsG~rd~~i~~Tdl~n~~----------~~tlick~daPv~~l~~~~ 307 (735)
T KOG0308|consen 239 LWDLGQQRCLATYIVHKEGVWALQSSPSFT-HVYSGGRDGNIYRTDLRNPA----------KSTLICKEDAPVLKLHLHE 307 (735)
T ss_pred eeeccccceeeeEEeccCceEEEeeCCCcc-eEEecCCCCcEEecccCCch----------hheEeecCCCchhhhhhcc
Confidence 999999999999999999999999998855 79999999999999988531 1122223345666677765
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEE
Q 004214 391 NDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRA 470 (768)
Q Consensus 391 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~ 470 (768)
..+-+-+++.|+.|+-|..+-.. .+++.+.+.. -+.|......+... .+-..+.| ..++...
T Consensus 308 ~~~~~WvtTtds~I~rW~~~~~~---------------~l~~s~~~~~-~~T~~~~~~~~~~~-tp~~vi~G-g~ai~k~ 369 (735)
T KOG0308|consen 308 HDNSVWVTTTDSSIKRWKLEPDI---------------ALSVSGDLDF-FSTDSNNHSCDLTN-TPDSVIPG-GAAIKKH 369 (735)
T ss_pred ccCCceeeeccccceecCCcccc---------------ccccCCCCCc-ccccCCCccccccC-CCceeccC-chhhhhh
Confidence 55555778899999999754221 3444455444 33444444544321 33333332 3456667
Q ss_pred EEEeCCCEEEEEeCCCcEEEEECCCCeEEEEec
Q 004214 471 SFLTRGAQIVSCGADGLVKLWTVRTGECIATYD 503 (768)
Q Consensus 471 ~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 503 (768)
++..|.+++++-...|.+.+||+-....+..+.
T Consensus 370 ~mL~dkRhVlTkDa~gnv~lwDIl~~~~~~d~g 402 (735)
T KOG0308|consen 370 AMLNDKRHVLTKDAKGNVALWDILACVKVEDFG 402 (735)
T ss_pred hhhcCcceEeeecCCCCEEEEEeeeeeehhhcc
Confidence 777899999999999999999998777666553
No 95
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=3.8e-27 Score=225.18 Aligned_cols=239 Identities=28% Similarity=0.477 Sum_probs=201.7
Q ss_pred CCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCC
Q 004214 280 GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDG 359 (768)
Q Consensus 280 ~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 359 (768)
+|...+.+++ .++++++ |++|+.|..|.||+..+.+.+..+.+|.+.|.+++|-.. .+-+++++.|++|++|+++
T Consensus 200 ~h~keil~~a--vS~Dgky-latgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~g-t~~lys~s~Drsvkvw~~~- 274 (479)
T KOG0299|consen 200 GHVKEILTLA--VSSDGKY-LATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKG-TSELYSASADRSVKVWSID- 274 (479)
T ss_pred cccceeEEEE--EcCCCcE-EEecCCCceEEEecCcccchhhcccccccceeeeeeecC-ccceeeeecCCceEEEehh-
Confidence 6777888886 6677775 999999999999999999999999999999999999776 4569999999999999998
Q ss_pred CCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEE
Q 004214 360 LSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVIT 439 (768)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t 439 (768)
......++.+|.+.|.++....-++.+.+|+.|+++++|++... ....+.+|.+.+-|++|-. ...+++
T Consensus 275 ---------~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ee-sqlifrg~~~sidcv~~In-~~Hfvs 343 (479)
T KOG0299|consen 275 ---------QLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEE-SQLIFRGGEGSIDCVAFIN-DEHFVS 343 (479)
T ss_pred ---------HhHHHHHHhCCccceeeechhcccceEEeccccceeEEEecccc-ceeeeeCCCCCeeeEEEec-ccceee
Confidence 44466677899999999999999999999999999999999543 3445788999999999986 557899
Q ss_pred eeCCCcEEEEeCCCCceeEEee-c-----------CCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCC----eEEEEec
Q 004214 440 ASGDKTIKIWSISDGSCLKTFE-G-----------HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTG----ECIATYD 503 (768)
Q Consensus 440 ~~~d~~i~iwd~~~~~~~~~~~-~-----------~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~ 503 (768)
|+.+|.|.+|++...+++.+.. + +..+|++++..|...++++|+.+|.|++|-+..| +++..+.
T Consensus 344 GSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls 423 (479)
T KOG0299|consen 344 GSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS 423 (479)
T ss_pred ccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc
Confidence 9999999999999988887664 1 2238999999999999999999999999999887 4566665
Q ss_pred cCCCcEEEEEEcCCCCEEEEE-eCCCcEEEEEc
Q 004214 504 KHEDKIWALAVGKKTEMFATG-GSDALVNLWHD 535 (768)
Q Consensus 504 ~~~~~v~~l~~s~~~~~l~s~-~~dg~v~vw~~ 535 (768)
-.+-|++++|+++|+.+++| |....+-=|-.
T Consensus 424 -~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~~ 455 (479)
T KOG0299|consen 424 -LVGFVNSLAFSNSGKRIVAGIGKEHRLGRWWC 455 (479)
T ss_pred -cccEEEEEEEccCCCEEEEecccccccceeeE
Confidence 67889999999999966655 44544544543
No 96
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=3.2e-27 Score=225.61 Aligned_cols=286 Identities=26% Similarity=0.391 Sum_probs=226.4
Q ss_pred EEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeE----EE------------e--cCccceeEEEEEcC
Q 004214 23 THYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCV----AT------------L--DKHFSRVTSMAITS 84 (768)
Q Consensus 23 ~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~----~~------------l--~~h~~~V~~l~fs~ 84 (768)
...+..|.-+|+||+++||.++ +++++.+|+|.=|++.+|+.. .+ . ++|...|.+++.|+
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~--~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~ 212 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKR--VFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSS 212 (479)
T ss_pred ceeeccccCcceEEEeeccccc--eeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcC
Confidence 5667789999999999999998 999999999999999887633 11 1 27888999999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEE
Q 004214 85 DGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRM 164 (768)
Q Consensus 85 d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i 164 (768)
||+||++++.|..|.||+.++.+.++.
T Consensus 213 Dgkylatgg~d~~v~Iw~~~t~ehv~~----------------------------------------------------- 239 (479)
T KOG0299|consen 213 DGKYLATGGRDRHVQIWDCDTLEHVKV----------------------------------------------------- 239 (479)
T ss_pred CCcEEEecCCCceEEEecCcccchhhc-----------------------------------------------------
Confidence 999999999999999999988654433
Q ss_pred EEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeE
Q 004214 165 WNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILD 244 (768)
Q Consensus 165 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 244 (768)
+.+|.+.|.+
T Consensus 240 ----------------------------------------------------------------------~~ghr~~V~~ 249 (479)
T KOG0299|consen 240 ----------------------------------------------------------------------FKGHRGAVSS 249 (479)
T ss_pred ----------------------------------------------------------------------ccccccceee
Confidence 3356667777
Q ss_pred EEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeee
Q 004214 245 LKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGT 324 (768)
Q Consensus 245 ~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 324 (768)
++|- .+...+++++.|+.|.+|+++....+.++.+|.+.|..++ .....+. +.+|+.|+++++|++.. .....+.
T Consensus 250 L~fr-~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Id--aL~reR~-vtVGgrDrT~rlwKi~e-esqlifr 324 (479)
T KOG0299|consen 250 LAFR-KGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGID--ALSRERC-VTVGGRDRTVRLWKIPE-ESQLIFR 324 (479)
T ss_pred eeee-cCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeec--hhcccce-EEeccccceeEEEeccc-cceeeee
Confidence 7776 3566788889999999999999999999999999999998 6666654 77777999999999944 3444677
Q ss_pred cccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccc--eeeEeeccCCCeEEEEEccCCCEEEEEeCCC
Q 004214 325 GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLK--AKAVVAAHGKDINSLAVAPNDSLVCTGSQDR 402 (768)
Q Consensus 325 ~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg 402 (768)
+|.+.+.|++|-.+. .+++|+.+|.|.+|++.............. +......++..|++++..|...++|+|+.+|
T Consensus 325 g~~~sidcv~~In~~--HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G 402 (479)
T KOG0299|consen 325 GGEGSIDCVAFINDE--HFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSG 402 (479)
T ss_pred CCCCCeeeEEEeccc--ceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCC
Confidence 899999999998763 599999999999999875432211110000 0001122334799999999999999999999
Q ss_pred cEEEEeCCCC----ceEEEEeccCCCeEEEEEccCCCEEEEee
Q 004214 403 TACVWRLPDL----VSVVTFRGHKRGIWSVEFSPVDQVVITAS 441 (768)
Q Consensus 403 ~i~i~d~~~~----~~~~~~~~~~~~v~~v~~s~~~~~l~t~~ 441 (768)
.|++|-+.++ .++..+. -.+-|++++|+++|+.+++|.
T Consensus 403 ~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagi 444 (479)
T KOG0299|consen 403 CVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGI 444 (479)
T ss_pred ceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEec
Confidence 9999998876 3444444 567899999999999776664
No 97
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.9e-28 Score=241.99 Aligned_cols=289 Identities=18% Similarity=0.321 Sum_probs=236.6
Q ss_pred EEEecCCCCEEEEEeCCCcEEEEECCCce------eeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCc-
Q 004214 245 LKFLGEEEQYLAVATNIEQVQVYDLSSMS------CSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR- 317 (768)
Q Consensus 245 ~~~~~~~~~~l~~~~~~~~i~i~d~~~~~------~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~- 317 (768)
+....+++++|.+|+.||.|++|+..... ....++.|.+.|..+. ....++. |++++.|-+|++|+...+
T Consensus 30 Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDii--L~~~~~t-lIS~SsDtTVK~W~~~~~~ 106 (735)
T KOG0308|consen 30 LQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDII--LCGNGKT-LISASSDTTVKVWNAHKDN 106 (735)
T ss_pred ccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHH--hhcCCCc-eEEecCCceEEEeecccCc
Confidence 34455788899999999999999986432 3567788999999986 3344555 999999999999999877
Q ss_pred -eEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEe-eccCCCeEEEEEccCCCEE
Q 004214 318 -CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVV-AAHGKDINSLAVAPNDSLV 395 (768)
Q Consensus 318 -~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~s~~~~~l 395 (768)
-++..+..|...|.|+++-.....++++||-|+.|.+||+..+................ .++..+|.+++.++.|..+
T Consensus 107 ~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~i 186 (735)
T KOG0308|consen 107 TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTII 186 (735)
T ss_pred chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEE
Confidence 57778889999999999944346689999999999999999763311111111122222 2788999999999999999
Q ss_pred EEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeC
Q 004214 396 CTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTR 475 (768)
Q Consensus 396 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~ 475 (768)
++|+..+.+++||.++.+.+..++||...|.++..++||+.+++++.||+|++||+...+|+.++..|...|.++..+|+
T Consensus 187 vsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~s 266 (735)
T KOG0308|consen 187 VSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPS 266 (735)
T ss_pred EecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 004214 476 GAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDS 536 (768)
Q Consensus 476 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~ 536 (768)
-..+++|+.||.|..=|+++......+.....+|..+..+...+-+-+++.|+.|.-|...
T Consensus 267 f~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~ 327 (735)
T KOG0308|consen 267 FTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLE 327 (735)
T ss_pred cceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCc
Confidence 9999999999999999999854333333356667777666554544666677788877654
No 98
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=4.7e-27 Score=212.41 Aligned_cols=275 Identities=25% Similarity=0.346 Sum_probs=213.7
Q ss_pred cCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCC-CeeE-EEecCccceeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004214 28 GHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLA-KKCV-ATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRD 105 (768)
Q Consensus 28 gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~-~~~~-~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~~ 105 (768)
...+.|.+|+|||.. ..+++.||.||+||+|+++. |..+ .....|.++|.+++|+.||..+++++.|+.+++||+.+
T Consensus 25 pP~DsIS~l~FSP~~-~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S 103 (347)
T KOG0647|consen 25 PPEDSISALAFSPQA-DNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLAS 103 (347)
T ss_pred CcccchheeEecccc-CceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccC
Confidence 467899999999943 34577999999999999976 4443 33456999999999999999999999999999999987
Q ss_pred CeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeeccc
Q 004214 106 YSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFE 185 (768)
Q Consensus 106 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~ 185 (768)
++..
T Consensus 104 ~Q~~---------------------------------------------------------------------------- 107 (347)
T KOG0647|consen 104 GQVS---------------------------------------------------------------------------- 107 (347)
T ss_pred CCee----------------------------------------------------------------------------
Confidence 6421
Q ss_pred ccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEE
Q 004214 186 MDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQ 265 (768)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~ 265 (768)
T Consensus 108 -------------------------------------------------------------------------------- 107 (347)
T KOG0647|consen 108 -------------------------------------------------------------------------------- 107 (347)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEE
Q 004214 266 VYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVS 345 (768)
Q Consensus 266 i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s 345 (768)
.+..|..+|.++.|..... -..|+||+.|.+|+.||++...++..+.- .+.+.++..-.. ++++
T Consensus 108 -----------~v~~Hd~pvkt~~wv~~~~-~~cl~TGSWDKTlKfWD~R~~~pv~t~~L-PeRvYa~Dv~~p---m~vV 171 (347)
T KOG0647|consen 108 -----------QVAAHDAPVKTCHWVPGMN-YQCLVTGSWDKTLKFWDTRSSNPVATLQL-PERVYAADVLYP---MAVV 171 (347)
T ss_pred -----------eeeecccceeEEEEecCCC-cceeEecccccceeecccCCCCeeeeeec-cceeeehhccCc---eeEE
Confidence 1122334444443111111 23499999999999999999888877663 456666665443 7899
Q ss_pred EeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC--ceEEEEeccCC
Q 004214 346 GSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDL--VSVVTFRGHKR 423 (768)
Q Consensus 346 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~ 423 (768)
+..++.|.+|++.+..... ........-.++|++..++....+.|+-.|.+.+..+..+ +.-.+|+.|..
T Consensus 172 ata~r~i~vynL~n~~te~--------k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~ 243 (347)
T KOG0647|consen 172 ATAERHIAVYNLENPPTEF--------KRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRS 243 (347)
T ss_pred EecCCcEEEEEcCCCcchh--------hhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEecc
Confidence 9999999999997653221 1111123346789999999888899999999999998876 45556777762
Q ss_pred ---------CeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEe
Q 004214 424 ---------GIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCG 483 (768)
Q Consensus 424 ---------~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 483 (768)
+|++++|+|....|+|++.||++.+||-.....+++.+.|..+|++..|+.+|.+++-+.
T Consensus 244 ~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 244 TNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred CCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEe
Confidence 578899999999999999999999999988889999999999999999999999887653
No 99
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.3e-26 Score=209.20 Aligned_cols=290 Identities=15% Similarity=0.228 Sum_probs=231.0
Q ss_pred ceEEEEecCeEEEEeeccCc-----ccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeee
Q 004214 204 GLLCVTADQQLLLYTTVEVP-----EKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVL 278 (768)
Q Consensus 204 ~l~~~~~dg~i~~~~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~ 278 (768)
.+++++....|+-+.+...+ .....+...-....|.+.|++++. ++.++++|++|.+|+|||+.+......+
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV---s~~~~aSGssDetI~IYDm~k~~qlg~l 79 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV---SGPYVASGSSDETIHIYDMRKRKQLGIL 79 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe---cceeEeccCCCCcEEEEeccchhhhcce
Confidence 46778888888888877665 122334445556788899999997 5679999999999999999999999999
Q ss_pred eCCccceEEEeeeeecCCC-EEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeC
Q 004214 279 AGHSEIVLCLDTCALSSGK-ILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSF 357 (768)
Q Consensus 279 ~~~~~~v~~l~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~ 357 (768)
..|.+.|+++. |.++-. ..|++|+.||.|.+|+.....++..+++|.+.|+.++++|.++ +.++.+.|+.++.||+
T Consensus 80 l~HagsitaL~--F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~K-LALsVg~D~~lr~WNL 156 (362)
T KOG0294|consen 80 LSHAGSITALK--FYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGK-LALSVGGDQVLRTWNL 156 (362)
T ss_pred eccccceEEEE--ecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCc-eEEEEcCCceeeeehh
Confidence 99999999998 555432 1399999999999999999999999999999999999999976 7889999999999999
Q ss_pred CCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEE
Q 004214 358 DGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVV 437 (768)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l 437 (768)
-.+..... ..-....+.+.|+|.|.+++.++.+ .|-+|.+.+......+... ..+.|+.|-. +..|
T Consensus 157 V~Gr~a~v-----------~~L~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~-~r~l~~~~l~-~~~L 222 (362)
T KOG0294|consen 157 VRGRVAFV-----------LNLKNKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIENP-KRILCATFLD-GSEL 222 (362)
T ss_pred hcCcccee-----------eccCCcceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhcc-ccceeeeecC-CceE
Confidence 76532211 1112233459999999999998876 5899999887766655432 4566776664 6789
Q ss_pred EEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEE--EeCCCEEEEEeCCCcEEEEECCCC-----eEEEEeccCCCcEE
Q 004214 438 ITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASF--LTRGAQIVSCGADGLVKLWTVRTG-----ECIATYDKHEDKIW 510 (768)
Q Consensus 438 ~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~--s~~~~~l~s~~~dg~i~iwd~~~~-----~~~~~~~~~~~~v~ 510 (768)
++|+.|+.|++||..+..+...+.+|...|-++.+ .|++.+|++++.||.|+|||++.. +++..+. -..+++
T Consensus 223 ~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n-~~~Rlt 301 (362)
T KOG0294|consen 223 LVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKKRPTLLAELN-TNVRLT 301 (362)
T ss_pred EEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccccCCcceeEEee-cCCccc
Confidence 99999999999999999999999999999999985 467889999999999999999865 3444444 244455
Q ss_pred EEEE
Q 004214 511 ALAV 514 (768)
Q Consensus 511 ~l~~ 514 (768)
|+..
T Consensus 302 Cl~~ 305 (362)
T KOG0294|consen 302 CLRV 305 (362)
T ss_pred eeee
Confidence 5543
No 100
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=2.1e-26 Score=242.26 Aligned_cols=234 Identities=16% Similarity=0.258 Sum_probs=190.7
Q ss_pred EEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCC
Q 004214 302 TGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGK 381 (768)
Q Consensus 302 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (768)
.|+.++.|++|+......+..+.+|.++|.+++|+|+...+|++|+.||+|++||+......... ...+...+.+|..
T Consensus 49 gGG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~--i~~p~~~L~gH~~ 126 (568)
T PTZ00420 49 GGGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKE--IKDPQCILKGHKK 126 (568)
T ss_pred CCCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccc--cccceEEeecCCC
Confidence 35667899999998888888999999999999999986668999999999999999754211100 0123345678999
Q ss_pred CeEEEEEccCCCE-EEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEe
Q 004214 382 DINSLAVAPNDSL-VCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTF 460 (768)
Q Consensus 382 ~i~~~~~s~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~ 460 (768)
.|.+++|+|++.. +++++.|++|++||+++++....+. |...|.+++|+|+|.+|++++.|+.|+|||+++++.+.++
T Consensus 127 ~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl 205 (568)
T PTZ00420 127 KISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSF 205 (568)
T ss_pred cEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEE
Confidence 9999999998875 5789999999999999998877776 6678999999999999999999999999999999999999
Q ss_pred ecCCCcEEEEE-----EEeCCCEEEEEeCCC----cEEEEECCC-CeEEEEec--cCCCcEEEEEEcCCCCEEEEEeCCC
Q 004214 461 EGHTSSVLRAS-----FLTRGAQIVSCGADG----LVKLWTVRT-GECIATYD--KHEDKIWALAVGKKTEMFATGGSDA 528 (768)
Q Consensus 461 ~~~~~~v~~~~-----~s~~~~~l~s~~~dg----~i~iwd~~~-~~~~~~~~--~~~~~v~~l~~s~~~~~l~s~~~dg 528 (768)
.+|.+.+.... |++++.+|++++.|+ .|+|||+++ ++++..+. .+.+.+......++|.++++|+.|+
T Consensus 206 ~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~ 285 (568)
T PTZ00420 206 HIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDG 285 (568)
T ss_pred ecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCC
Confidence 99988754433 457889999988774 799999995 56666543 3334444444566799999999999
Q ss_pred cEEEEEcCCH
Q 004214 529 LVNLWHDSTA 538 (768)
Q Consensus 529 ~v~vw~~~~~ 538 (768)
.|++|++..+
T Consensus 286 tIr~~e~~~~ 295 (568)
T PTZ00420 286 NCRYYQHSLG 295 (568)
T ss_pred eEEEEEccCC
Confidence 9999999765
No 101
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=7.6e-27 Score=234.77 Aligned_cols=266 Identities=27% Similarity=0.408 Sum_probs=227.8
Q ss_pred ecCCCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecC-ccceeEEEEEcC
Q 004214 6 EGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDK-HFSRVTSMAITS 84 (768)
Q Consensus 6 g~~dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~-h~~~V~~l~fs~ 84 (768)
-+.+..|.+|+..++........+...|+++.|+++|.. ||+|..+|.|.|||..+.+.+..+.+ |...|-+++|.
T Consensus 193 Valg~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~--LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~- 269 (484)
T KOG0305|consen 193 VALGQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSH--LAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN- 269 (484)
T ss_pred EEecceEEEEecCCCceEEeEecCCCceEEEEECCCCCE--EEEeecCCeEEEEehhhccccccccCCcCceeEEEecc-
Confidence 345779999999999977777767999999999999998 99999999999999999999999999 99999999998
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEE
Q 004214 85 DGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRM 164 (768)
Q Consensus 85 d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i 164 (768)
+..+.+|+.|+.|..+|++..+..
T Consensus 270 -~~~lssGsr~~~I~~~dvR~~~~~------------------------------------------------------- 293 (484)
T KOG0305|consen 270 -SSVLSSGSRDGKILNHDVRISQHV------------------------------------------------------- 293 (484)
T ss_pred -CceEEEecCCCcEEEEEEecchhh-------------------------------------------------------
Confidence 668889999999999987643200
Q ss_pred EEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeE
Q 004214 165 WNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILD 244 (768)
Q Consensus 165 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 244 (768)
T Consensus 294 -------------------------------------------------------------------------------- 293 (484)
T KOG0305|consen 294 -------------------------------------------------------------------------------- 293 (484)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeee
Q 004214 245 LKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGT 324 (768)
Q Consensus 245 ~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 324 (768)
...+.+|...|..+. +.+++.. +++|+.|+.+.|||.....+...+.
T Consensus 294 ------------------------------~~~~~~H~qeVCgLk--ws~d~~~-lASGgnDN~~~Iwd~~~~~p~~~~~ 340 (484)
T KOG0305|consen 294 ------------------------------VSTLQGHRQEVCGLK--WSPDGNQ-LASGGNDNVVFIWDGLSPEPKFTFT 340 (484)
T ss_pred ------------------------------hhhhhcccceeeeeE--ECCCCCe-eccCCCccceEeccCCCccccEEEe
Confidence 002456777788886 5566665 9999999999999998888999999
Q ss_pred cccCcEEEEEEecCCCcEEEEEe--CCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEE--eC
Q 004214 325 GHMGAVGAVAFSKKLQNFLVSGS--SDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTG--SQ 400 (768)
Q Consensus 325 ~~~~~v~~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~--~~ 400 (768)
.|.+.|.+++|+|-...+||+|+ .|+.|++||...+.. .........|.++.|++..+.|+++ ..
T Consensus 341 ~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~-----------i~~vdtgsQVcsL~Wsk~~kEi~sthG~s 409 (484)
T KOG0305|consen 341 EHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGAR-----------IDSVDTGSQVCSLIWSKKYKELLSTHGYS 409 (484)
T ss_pred ccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcE-----------ecccccCCceeeEEEcCCCCEEEEecCCC
Confidence 99999999999999888999986 599999999985531 1123356789999999998777764 45
Q ss_pred CCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCC
Q 004214 401 DRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG 454 (768)
Q Consensus 401 dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~ 454 (768)
+..|.||+..+.+.+..+.+|...|..++++|||..+++|+.|.++++|++-..
T Consensus 410 ~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 410 ENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 678999999999999999999999999999999999999999999999998664
No 102
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.1e-27 Score=246.68 Aligned_cols=215 Identities=22% Similarity=0.318 Sum_probs=175.8
Q ss_pred EEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEE
Q 004214 231 LSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVR 310 (768)
Q Consensus 231 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~ 310 (768)
....+.||.+.|.++.|+ ..++|++++.|.+|++|++....|+..+. |.+.|+|++ |.|-+..+|++|+-||.|+
T Consensus 361 P~~ef~GHt~DILDlSWS--Kn~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVa--FnPvDDryFiSGSLD~KvR 435 (712)
T KOG0283|consen 361 PFCEFKGHTADILDLSWS--KNNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVA--FNPVDDRYFISGSLDGKVR 435 (712)
T ss_pred chhhhhccchhheecccc--cCCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEE--ecccCCCcEeecccccceE
Confidence 345678999999999998 56799999999999999999999997775 999999999 8998888999999999999
Q ss_pred EEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEcc
Q 004214 311 LWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP 390 (768)
Q Consensus 311 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 390 (768)
||++...+.+.-...+ .-|++++|.|+|+ ..+.|+.+|.+++|+................... ..| ..|+.+.|.|
T Consensus 436 iWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk-~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk-~~~-~rITG~Q~~p 511 (712)
T KOG0283|consen 436 LWSISDKKVVDWNDLR-DLITAVCYSPDGK-GAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKK-KQG-KRITGLQFFP 511 (712)
T ss_pred EeecCcCeeEeehhhh-hhheeEEeccCCc-eEEEEEeccEEEEEEccCCeEEEeeeEeeccCcc-ccC-ceeeeeEecC
Confidence 9999988877655544 8899999999977 7999999999999998865322221111111111 112 3899999998
Q ss_pred C-CCEEEEEeCCCcEEEEeCCCCceEEEEeccCC--CeEEEEEccCCCEEEEeeCCCcEEEEeCCCC
Q 004214 391 N-DSLVCTGSQDRTACVWRLPDLVSVVTFRGHKR--GIWSVEFSPVDQVVITASGDKTIKIWSISDG 454 (768)
Q Consensus 391 ~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~ 454 (768)
. ...+++.+.|..|+|||.++..++..|+|+.. .-....|+.||++|++++.|..|+||++...
T Consensus 512 ~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 512 GDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSF 578 (712)
T ss_pred CCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCC
Confidence 3 44677789999999999999889888887543 3356789999999999999999999998443
No 103
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.96 E-value=2.6e-27 Score=226.63 Aligned_cols=254 Identities=20% Similarity=0.365 Sum_probs=217.4
Q ss_pred eCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCce----------EEEeeecccCcEEEEEEecCCCcEEEEEeC
Q 004214 279 AGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC----------CVGVGTGHMGAVGAVAFSKKLQNFLVSGSS 348 (768)
Q Consensus 279 ~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----------~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~ 348 (768)
-.|.+.|..+. +.|.+..++++++..+.|.|||...-. +-..+.+|...-.+++|++.....+++++.
T Consensus 121 i~h~gEVnRaR--ymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~ 198 (422)
T KOG0264|consen 121 INHDGEVNRAR--YMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSD 198 (422)
T ss_pred ccCCccchhhh--hCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccC
Confidence 45788888887 778888889999999999999976421 122677898888889999988889999999
Q ss_pred CCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCC--CCceEEEEeccCCCe
Q 004214 349 DHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQDRTACVWRLP--DLVSVVTFRGHKRGI 425 (768)
Q Consensus 349 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~v 425 (768)
|++|.+||+...... .....+...+.+|...|..++|+| +..++++++.|+.+.|||++ +.++.....+|..+|
T Consensus 199 d~~i~lwdi~~~~~~---~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~v 275 (422)
T KOG0264|consen 199 DHTICLWDINAESKE---DKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEV 275 (422)
T ss_pred CCcEEEEeccccccC---CccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCce
Confidence 999999999876543 224557778899999999999999 67789999999999999999 667777888999999
Q ss_pred EEEEEccC-CCEEEEeeCCCcEEEEeCCCC-ceeEEeecCCCcEEEEEEEeCC-CEEEEEeCCCcEEEEECCC-------
Q 004214 426 WSVEFSPV-DQVVITASGDKTIKIWSISDG-SCLKTFEGHTSSVLRASFLTRG-AQIVSCGADGLVKLWTVRT------- 495 (768)
Q Consensus 426 ~~v~~s~~-~~~l~t~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~------- 495 (768)
+|++|+|- +.+||||+.|++|++||+++- .++.++.+|...|.++.|+|.. ..|++++.|+.+.|||+..
T Consensus 276 n~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~ 355 (422)
T KOG0264|consen 276 NCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSP 355 (422)
T ss_pred eEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccCh
Confidence 99999995 578899999999999999885 5889999999999999999964 5789999999999999863
Q ss_pred -------CeEEEEeccCCCcEEEEEEcCCCCE-EEEEeCCCcEEEEEcCC
Q 004214 496 -------GECIATYDKHEDKIWALAVGKKTEM-FATGGSDALVNLWHDST 537 (768)
Q Consensus 496 -------~~~~~~~~~~~~~v~~l~~s~~~~~-l~s~~~dg~v~vw~~~~ 537 (768)
.+++....+|...|..+.|+|+..+ +++.++|+.+.||+...
T Consensus 356 eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 356 EDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred hhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 2456777899999999999998775 66889999999999873
No 104
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=3.3e-26 Score=240.30 Aligned_cols=215 Identities=20% Similarity=0.290 Sum_probs=178.9
Q ss_pred eeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCC-CEEEEEeC
Q 004214 322 VGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND-SLVCTGSQ 400 (768)
Q Consensus 322 ~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~ 400 (768)
.+.+|.+.|.+++|+|....+|++|+.|++|++||+....... ........+.+|...|.+++|+|++ .+|++|+.
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~---~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~ 146 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQ---NISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGA 146 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCcccc---ccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeC
Confidence 4678999999999999435589999999999999997542111 0122455678899999999999975 79999999
Q ss_pred CCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCc-EEEEEEEeCCCEE
Q 004214 401 DRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSS-VLRASFLTRGAQI 479 (768)
Q Consensus 401 dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l 479 (768)
|++|++||+.+++.+..+.+|...|.+++|+|+|.+|++++.|++|+|||+++++.+.++.+|.+. +..+.|.+++..+
T Consensus 147 DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~i 226 (493)
T PTZ00421 147 DMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLI 226 (493)
T ss_pred CCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeE
Confidence 999999999999999999999999999999999999999999999999999999999999999865 4567899988888
Q ss_pred EEEe----CCCcEEEEECCCCe-EEEEeccC-CCcEEEEEEcCCCCEEEEEe-CCCcEEEEEcCCHH
Q 004214 480 VSCG----ADGLVKLWTVRTGE-CIATYDKH-EDKIWALAVGKKTEMFATGG-SDALVNLWHDSTAA 539 (768)
Q Consensus 480 ~s~~----~dg~i~iwd~~~~~-~~~~~~~~-~~~v~~l~~s~~~~~l~s~~-~dg~v~vw~~~~~~ 539 (768)
++++ .|+.|++||+++.. ++.....+ ...+....|++++.+|++++ .||.|++|++.++.
T Consensus 227 vt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~ 293 (493)
T PTZ00421 227 ITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER 293 (493)
T ss_pred EEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc
Confidence 7765 47899999998754 44444333 34566678999999999888 59999999998654
No 105
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=2.8e-25 Score=192.13 Aligned_cols=299 Identities=20% Similarity=0.307 Sum_probs=222.5
Q ss_pred cCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECC------CCe--------e-EEEecCccceeEEEEEcCCCCEEEEE
Q 004214 28 GHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLL------AKK--------C-VATLDKHFSRVTSMAITSDGSTLISA 92 (768)
Q Consensus 28 gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~------~~~--------~-~~~l~~h~~~V~~l~fs~d~~~L~s~ 92 (768)
.....|.+++|+|.|.. .|.|+...+.+|--.. .+. . ...-+.|.+.|.|.+|||+|.+|+++
T Consensus 30 ~dsqairav~fhp~g~l--yavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatg 107 (350)
T KOG0641|consen 30 EDSQAIRAVAFHPAGGL--YAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATG 107 (350)
T ss_pred cchhheeeEEecCCCce--EEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEec
Confidence 36789999999999887 8999999998887542 111 1 12235689999999999999999999
Q ss_pred eCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCcee
Q 004214 93 GRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACL 172 (768)
Q Consensus 93 ~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~ 172 (768)
+.|.+|++.-+....+-.+-
T Consensus 108 sndk~ik~l~fn~dt~~~~g------------------------------------------------------------ 127 (350)
T KOG0641|consen 108 SNDKTIKVLPFNADTCNATG------------------------------------------------------------ 127 (350)
T ss_pred CCCceEEEEecccccccccC------------------------------------------------------------
Confidence 99999988644321100000
Q ss_pred eeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCC
Q 004214 173 YEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEE 252 (768)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 252 (768)
....+.-|.+.|.+++|...
T Consensus 128 ----------------------------------------------------------~dle~nmhdgtirdl~fld~-- 147 (350)
T KOG0641|consen 128 ----------------------------------------------------------HDLEFNMHDGTIRDLAFLDD-- 147 (350)
T ss_pred ----------------------------------------------------------cceeeeecCCceeeeEEecC--
Confidence 00112224455556665421
Q ss_pred CEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEE-eCCCeEEEEeCCCceEEEeeecccCcEE
Q 004214 253 QYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTG-SKDNSVRLWDSESRCCVGVGTGHMGAVG 331 (768)
Q Consensus 253 ~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 331 (768)
. ..++.+|+++ ..|..|++-|...++....+.+|++.|.
T Consensus 148 ---------------------------------------~-~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghil 187 (350)
T KOG0641|consen 148 ---------------------------------------P-ESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHIL 187 (350)
T ss_pred ---------------------------------------C-CcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEE
Confidence 1 1223334444 4577888889999999999999999998
Q ss_pred EEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004214 332 AVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPD 411 (768)
Q Consensus 332 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~ 411 (768)
++.--. ..++++|+.|.+|++||++-............. -.-..+.|.++++.|.|++|++|-.|....+||++.
T Consensus 188 alyswn--~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~---~glessavaav~vdpsgrll~sg~~dssc~lydirg 262 (350)
T KOG0641|consen 188 ALYSWN--GAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHD---GGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRG 262 (350)
T ss_pred EEEEec--CcEEEccCCCceEEEEeeeccceeeeccCcccC---CCcccceeEEEEECCCcceeeeccCCCceEEEEeeC
Confidence 874332 338999999999999999854321110000000 001236789999999999999999999999999999
Q ss_pred CceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCC----ceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCc
Q 004214 412 LVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG----SCLKTFEGHTSSVLRASFLTRGAQIVSCGADGL 487 (768)
Q Consensus 412 ~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~----~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~ 487 (768)
++++..+..|...|.|+.|+|.-.++++++.|..|++-|+... -++.....|...+..+.|.|..--+++.+.|.+
T Consensus 263 ~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt 342 (350)
T KOG0641|consen 263 GRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKT 342 (350)
T ss_pred CceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcce
Confidence 9999999999999999999999999999999999999998532 233445579999999999999989999999999
Q ss_pred EEEEEC
Q 004214 488 VKLWTV 493 (768)
Q Consensus 488 i~iwd~ 493 (768)
+.+|-+
T Consensus 343 ~tlwa~ 348 (350)
T KOG0641|consen 343 ATLWAL 348 (350)
T ss_pred EEEecc
Confidence 999975
No 106
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=5.7e-26 Score=238.55 Aligned_cols=229 Identities=19% Similarity=0.254 Sum_probs=188.2
Q ss_pred eeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCc-------eEEEeeecccCcEEEEEEecCCCcEEEEEeCC
Q 004214 277 VLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR-------CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSD 349 (768)
Q Consensus 277 ~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d 349 (768)
.+.+|.+.|.+++ +.+.++.+|++|+.||+|++||+.++ .++..+.+|...|.+++|+|.+.++|++++.|
T Consensus 70 ~l~GH~~~V~~v~--fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~D 147 (493)
T PTZ00421 70 ILLGQEGPIIDVA--FNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGAD 147 (493)
T ss_pred eEeCCCCCEEEEE--EcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCC
Confidence 4789999999998 66634445999999999999999764 35667889999999999999877799999999
Q ss_pred CeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCC-eEEE
Q 004214 350 HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRG-IWSV 428 (768)
Q Consensus 350 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-v~~v 428 (768)
++|++||+..+ .....+..|...|.+++|+|+|.+|++++.|++|++||+++++.+..+.+|... +..+
T Consensus 148 gtVrIWDl~tg----------~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~ 217 (493)
T PTZ00421 148 MVVNVWDVERG----------KAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRC 217 (493)
T ss_pred CEEEEEECCCC----------eEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEE
Confidence 99999999843 244556779999999999999999999999999999999999999999999765 4567
Q ss_pred EEccCCCEEEEee----CCCcEEEEeCCCCc-eeEEeecC-CCcEEEEEEEeCCCEEEEEe-CCCcEEEEECCCCeEEEE
Q 004214 429 EFSPVDQVVITAS----GDKTIKIWSISDGS-CLKTFEGH-TSSVLRASFLTRGAQIVSCG-ADGLVKLWTVRTGECIAT 501 (768)
Q Consensus 429 ~~s~~~~~l~t~~----~d~~i~iwd~~~~~-~~~~~~~~-~~~v~~~~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~~~ 501 (768)
.|.+++..+++++ .|+.|++||+++.. ++.....+ ...+....|++++++|++++ .||.|++||+.+++++..
T Consensus 218 ~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~ 297 (493)
T PTZ00421 218 LWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFC 297 (493)
T ss_pred EEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEE
Confidence 8999888777654 47899999998764 44444433 34556677899999999888 499999999999988776
Q ss_pred ecc-CCCcEEEEEEcCC
Q 004214 502 YDK-HEDKIWALAVGKK 517 (768)
Q Consensus 502 ~~~-~~~~v~~l~~s~~ 517 (768)
... +..++.+++|.|.
T Consensus 298 ~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 298 SSYSSVEPHKGLCMMPK 314 (493)
T ss_pred eeccCCCCCcceEeccc
Confidence 543 4456778888875
No 107
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.96 E-value=1.2e-26 Score=232.45 Aligned_cols=225 Identities=28% Similarity=0.442 Sum_probs=196.9
Q ss_pred EEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeee
Q 004214 245 LKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGT 324 (768)
Q Consensus 245 ~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 324 (768)
++|...++..+++|+.|..|.+|...+..+...+.+|...|.|++ ...++ . +++|+.|.++++|-. +++...+.
T Consensus 64 i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls--~~~~~-~-~iSgSWD~TakvW~~--~~l~~~l~ 137 (745)
T KOG0301|consen 64 ICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLS--IGEDG-T-LISGSWDSTAKVWRI--GELVYSLQ 137 (745)
T ss_pred ceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeee--cCCcC-c-eEecccccceEEecc--hhhhcccC
Confidence 556555666799999999999999999999999999999999986 33333 3 899999999999965 44556689
Q ss_pred cccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcE
Q 004214 325 GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTA 404 (768)
Q Consensus 325 ~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i 404 (768)
+|+.+|++++..|.+ .+++|+.|.+|++|.-. +...++.+|.+.|+.+++-|++ .+++++.||.|
T Consensus 138 gH~asVWAv~~l~e~--~~vTgsaDKtIklWk~~------------~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~I 202 (745)
T KOG0301|consen 138 GHTASVWAVASLPEN--TYVTGSADKTIKLWKGG------------TLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSI 202 (745)
T ss_pred CcchheeeeeecCCC--cEEeccCcceeeeccCC------------chhhhhccchhheeeeEEecCC-CeEeecCCceE
Confidence 999999999999986 59999999999999743 3667788999999999999875 47888999999
Q ss_pred EEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeC
Q 004214 405 CVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGA 484 (768)
Q Consensus 405 ~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 484 (768)
++|++ +++.+..+.+|..-|.++...+++..++++++|++++||+.. .|.+.+.-....|+++.+.++| -+++|+.
T Consensus 203 r~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~Ng-DIvvg~S 278 (745)
T KOG0301|consen 203 RLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNG-DIVVGGS 278 (745)
T ss_pred EEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCC-CEEEecc
Confidence 99999 889999999999999999988889999999999999999975 8888888666799999999888 5778899
Q ss_pred CCcEEEEECC
Q 004214 485 DGLVKLWTVR 494 (768)
Q Consensus 485 dg~i~iwd~~ 494 (768)
||.|+||...
T Consensus 279 DG~VrVfT~~ 288 (745)
T KOG0301|consen 279 DGRVRVFTVD 288 (745)
T ss_pred CceEEEEEec
Confidence 9999999875
No 108
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=8.2e-26 Score=237.87 Aligned_cols=247 Identities=15% Similarity=0.210 Sum_probs=196.6
Q ss_pred EeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCce--------EEEeeecccCc
Q 004214 258 ATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC--------CVGVGTGHMGA 329 (768)
Q Consensus 258 ~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--------~~~~~~~~~~~ 329 (768)
|+..+.+++|+......+..+.+|...|.+++ +.+.+..+|++|+.||.|++||+.++. ++..+.+|...
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~la--fsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~ 127 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQ--FNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKK 127 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEE--EcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCc
Confidence 45568899999988888888999999999998 667655569999999999999997542 34467889999
Q ss_pred EEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeC
Q 004214 330 VGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRL 409 (768)
Q Consensus 330 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~ 409 (768)
|.+++|+|++..++++++.|++|++||+..+. ..... .|...|.+++|+|+|.+|++++.|+.|++||+
T Consensus 128 V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~----------~~~~i-~~~~~V~SlswspdG~lLat~s~D~~IrIwD~ 196 (568)
T PTZ00420 128 ISIIDWNPMNYYIMCSSGFDSFVNIWDIENEK----------RAFQI-NMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDP 196 (568)
T ss_pred EEEEEECCCCCeEEEEEeCCCeEEEEECCCCc----------EEEEE-ecCCcEEEEEECCCCCEEEEEecCCEEEEEEC
Confidence 99999999988778899999999999998542 12222 35678999999999999999999999999999
Q ss_pred CCCceEEEEeccCCCeEE-----EEEccCCCEEEEeeCCC----cEEEEeCCC-CceeEEeec--CCCcEEEEEEEeCCC
Q 004214 410 PDLVSVVTFRGHKRGIWS-----VEFSPVDQVVITASGDK----TIKIWSISD-GSCLKTFEG--HTSSVLRASFLTRGA 477 (768)
Q Consensus 410 ~~~~~~~~~~~~~~~v~~-----v~~s~~~~~l~t~~~d~----~i~iwd~~~-~~~~~~~~~--~~~~v~~~~~s~~~~ 477 (768)
++++.+..+.+|.+.+.+ ..|++++.+|++++.|+ +|+|||+++ +.++..+.. +.+.+......++|.
T Consensus 197 Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~ 276 (568)
T PTZ00420 197 RKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGL 276 (568)
T ss_pred CCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCC
Confidence 999999999999876543 34568889999988764 799999985 566666542 333343344455688
Q ss_pred EEEEEeCCCcEEEEECCCCeE--EEEeccCCCcEEEEEEcCCC
Q 004214 478 QIVSCGADGLVKLWTVRTGEC--IATYDKHEDKIWALAVGKKT 518 (768)
Q Consensus 478 ~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~l~~s~~~ 518 (768)
++++|+.|+.|++|++..+.. +..+. +..++.+++|.|..
T Consensus 277 l~lsGkGD~tIr~~e~~~~~~~~l~~~~-s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 277 IYLIGKGDGNCRYYQHSLGSIRKVNEYK-SCSPFRSFGFLPKQ 318 (568)
T ss_pred EEEEEECCCeEEEEEccCCcEEeecccc-cCCCccceEEcccc
Confidence 999999999999999987743 22222 56778899999964
No 109
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.9e-26 Score=209.72 Aligned_cols=244 Identities=22% Similarity=0.423 Sum_probs=209.6
Q ss_pred eeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCC-cEEEEEeCCCeEE
Q 004214 275 SYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQ-NFLVSGSSDHTIK 353 (768)
Q Consensus 275 ~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~s~~~dg~i~ 353 (768)
...++.|...+++++ -++. ++++|+.|-+|+|||+.+...+..+-.|.+.|+++.|.+... +.|++|+.||.|.
T Consensus 36 lF~~~aH~~sitavA----Vs~~-~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~ 110 (362)
T KOG0294|consen 36 LFAFSAHAGSITALA----VSGP-YVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHII 110 (362)
T ss_pred cccccccccceeEEE----ecce-eEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEE
Confidence 455688999999997 2344 599999999999999999999999999999999999988642 3699999999999
Q ss_pred EEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccC
Q 004214 354 VWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPV 433 (768)
Q Consensus 354 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~ 433 (768)
+|+.. .......+.+|...|+.++++|.+++-++.+.|+.++.||+-.|+.-..++- ...-+.+.|+|.
T Consensus 111 iw~~~----------~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L-~~~at~v~w~~~ 179 (362)
T KOG0294|consen 111 IWRVG----------SWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNL-KNKATLVSWSPQ 179 (362)
T ss_pred EEEcC----------CeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeecc-CCcceeeEEcCC
Confidence 99987 6678888999999999999999999999999999999999998877665552 233445999999
Q ss_pred CCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEE
Q 004214 434 DQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALA 513 (768)
Q Consensus 434 ~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~ 513 (768)
|.+++.++. ..|-||.+.+......+... ..+.++.|. ++..|++|+.|+.|.+||..+..+...+.+|..+|-++.
T Consensus 180 Gd~F~v~~~-~~i~i~q~d~A~v~~~i~~~-~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~ 256 (362)
T KOG0294|consen 180 GDHFVVSGR-NKIDIYQLDNASVFREIENP-KRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIA 256 (362)
T ss_pred CCEEEEEec-cEEEEEecccHhHhhhhhcc-ccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchhheeeeE
Confidence 999988887 56999999888777776633 556666664 567999999999999999999999999999999999997
Q ss_pred E--cCCCCEEEEEeCCCcEEEEEcCC
Q 004214 514 V--GKKTEMFATGGSDALVNLWHDST 537 (768)
Q Consensus 514 ~--s~~~~~l~s~~~dg~v~vw~~~~ 537 (768)
+ .|++.+|+|+|+||.|+|||+..
T Consensus 257 ~~~~~~~~~lvTaSSDG~I~vWd~~~ 282 (362)
T KOG0294|consen 257 SYTNPEHEYLVTASSDGFIKVWDIDM 282 (362)
T ss_pred EEecCCceEEEEeccCceEEEEEccc
Confidence 4 46788999999999999999875
No 110
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.96 E-value=1.3e-26 Score=219.55 Aligned_cols=271 Identities=22% Similarity=0.352 Sum_probs=225.2
Q ss_pred EEEeecCCCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEE
Q 004214 2 FALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMA 81 (768)
Q Consensus 2 ~latg~~dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~ 81 (768)
++.|||.|..+.++|..+++.+..|+||...|+.+.|+|+... +++++.|-.|+||.............|.++|+.+.
T Consensus 233 ~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~--v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls 310 (506)
T KOG0289|consen 233 KILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDT--VITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLS 310 (506)
T ss_pred cceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhh--eeecCCcceEEeeccccccCccccccccccceeee
Confidence 4689999999999999999999999999999999999998777 99999999999999998888888999999999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcE
Q 004214 82 ITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGI 161 (768)
Q Consensus 82 fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 161 (768)
..|.|.||++++.|++..+.|++++.++......
T Consensus 311 ~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~---------------------------------------------- 344 (506)
T KOG0289|consen 311 LHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDE---------------------------------------------- 344 (506)
T ss_pred eccCCcEEEEecCCceEEEEEccCCcEEEEEeec----------------------------------------------
Confidence 9999999999999999999888776533221100
Q ss_pred EEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCc
Q 004214 162 VRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEE 241 (768)
Q Consensus 162 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (768)
T Consensus 345 -------------------------------------------------------------------------------- 344 (506)
T KOG0289|consen 345 -------------------------------------------------------------------------------- 344 (506)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEE
Q 004214 242 ILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVG 321 (768)
Q Consensus 242 i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 321 (768)
...-.+++.. +.| ++.+|.+|+.||.|++||+.++..+.
T Consensus 345 --------------------------------------~s~v~~ts~~--fHp-DgLifgtgt~d~~vkiwdlks~~~~a 383 (506)
T KOG0289|consen 345 --------------------------------------TSDVEYTSAA--FHP-DGLIFGTGTPDGVVKIWDLKSQTNVA 383 (506)
T ss_pred --------------------------------------cccceeEEee--EcC-CceEEeccCCCceEEEEEcCCccccc
Confidence 0001122332 444 44569999999999999999999999
Q ss_pred eeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCC
Q 004214 322 VGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQD 401 (768)
Q Consensus 322 ~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d 401 (768)
.|.+|+++|..++|+.+|- ++++++.|+.|++||++.... ...........+.++.|++.|.+|+.++.|
T Consensus 384 ~Fpght~~vk~i~FsENGY-~Lat~add~~V~lwDLRKl~n---------~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~ 453 (506)
T KOG0289|consen 384 KFPGHTGPVKAISFSENGY-WLATAADDGSVKLWDLRKLKN---------FKTIQLDEKKEVNSLSFDQSGTYLGIAGSD 453 (506)
T ss_pred cCCCCCCceeEEEeccCce-EEEEEecCCeEEEEEehhhcc---------cceeeccccccceeEEEcCCCCeEEeecce
Confidence 9999999999999999965 899999999999999985431 112222233479999999999999999877
Q ss_pred CcEEEEeC--CCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeC
Q 004214 402 RTACVWRL--PDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSI 451 (768)
Q Consensus 402 g~i~i~d~--~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~ 451 (768)
=.|++++- .+...+..+..|.+..+++.|....+++++++.|..++++.+
T Consensus 454 l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 454 LQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred eEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 66666653 256778888889999999999999999999999999988864
No 111
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=9.9e-26 Score=238.44 Aligned_cols=285 Identities=18% Similarity=0.225 Sum_probs=239.7
Q ss_pred ceeEEEEecCCCCEEEEEe--CCCcEEEEECCC------------ceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCC
Q 004214 241 EILDLKFLGEEEQYLAVAT--NIEQVQVYDLSS------------MSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKD 306 (768)
Q Consensus 241 ~i~~~~~~~~~~~~l~~~~--~~~~i~i~d~~~------------~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~d 306 (768)
.|.++..+ +++..+++|+ .|+.+++|+... ...+.....|.+.|.|+. |.+++.+ ||+|+.|
T Consensus 15 ~IfSIdv~-pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR--~S~dG~~-lAsGSDD 90 (942)
T KOG0973|consen 15 SIFSIDVH-PDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVR--FSPDGSY-LASGSDD 90 (942)
T ss_pred eEEEEEec-CCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEE--ECCCCCe-EeeccCc
Confidence 45666665 5889999999 789999998753 223445678999999997 7777776 9999999
Q ss_pred CeEEEEeCCC------------------ceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCcccc
Q 004214 307 NSVRLWDSES------------------RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPM 368 (768)
Q Consensus 307 g~i~iwd~~~------------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 368 (768)
+.|.+|.... .+.+..+.+|.+.|..++|+|++. ++++++.|++|.+|+..
T Consensus 91 ~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~-~lvS~s~DnsViiwn~~---------- 159 (942)
T KOG0973|consen 91 RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS-LLVSVSLDNSVIIWNAK---------- 159 (942)
T ss_pred ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc-EEEEecccceEEEEccc----------
Confidence 9999998762 235677889999999999999866 99999999999999987
Q ss_pred ccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccC------CCeEEEEEccCCCEEEEeeC
Q 004214 369 NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHK------RGIWSVEFSPVDQVVITASG 442 (768)
Q Consensus 369 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------~~v~~v~~s~~~~~l~t~~~ 442 (768)
.......+.+|...|..+.|+|-|++||+-+.|++|++|++.+......+.++. ..+..+.|||||++|++...
T Consensus 160 tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA 239 (942)
T KOG0973|consen 160 TFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNA 239 (942)
T ss_pred cceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhh
Confidence 446788889999999999999999999999999999999988877766666543 35788999999999998643
Q ss_pred ----CCcEEEEeCCCCceeEEeecCCCcEEEEEEEeC------C-------C----EEEEEeCCCcEEEEECCCCeEEEE
Q 004214 443 ----DKTIKIWSISDGSCLKTFEGHTSSVLRASFLTR------G-------A----QIVSCGADGLVKLWTVRTGECIAT 501 (768)
Q Consensus 443 ----d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~------~-------~----~l~s~~~dg~i~iwd~~~~~~~~~ 501 (768)
-.++.|.+-.+.+.-..|-||.+++.++.|+|. . + .+|+|+.|++|.||.....+++..
T Consensus 240 ~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~v 319 (942)
T KOG0973|consen 240 VNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFV 319 (942)
T ss_pred ccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhh
Confidence 356889998888888999999999999999972 1 1 578999999999999988887766
Q ss_pred ec-cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCHHH
Q 004214 502 YD-KHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAE 540 (768)
Q Consensus 502 ~~-~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~~~ 540 (768)
+. -....|..|+|+|||..|++++.||+|.+..+...+.
T Consensus 320 i~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~El 359 (942)
T KOG0973|consen 320 IHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKEL 359 (942)
T ss_pred hhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHHh
Confidence 53 2457899999999999999999999999999887654
No 112
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=1.6e-25 Score=202.55 Aligned_cols=270 Identities=20% Similarity=0.256 Sum_probs=214.7
Q ss_pred cCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCc-ee-eeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCC
Q 004214 238 YNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSM-SC-SYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSE 315 (768)
Q Consensus 238 ~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~-~~-~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~ 315 (768)
..+.|.+++|+|....++++++.|++|++|+++.. .. .+....|.++|.+++ |..++.. +++|+.|+.+++||+.
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~--Wsddgsk-Vf~g~~Dk~~k~wDL~ 102 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVC--WSDDGSK-VFSGGCDKQAKLWDLA 102 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEE--EccCCce-EEeeccCCceEEEEcc
Confidence 35679999999988889999999999999999873 32 345677999999986 6666655 9999999999999999
Q ss_pred CceEEEeeecccCcEEEEEEecCCC-cEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCE
Q 004214 316 SRCCVGVGTGHMGAVGAVAFSKKLQ-NFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSL 394 (768)
Q Consensus 316 ~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 394 (768)
+++ +..+..|.++|.++.|-+... .+|++|++|++|++||++... +.... .-...+.++. --..+
T Consensus 103 S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~----------pv~t~-~LPeRvYa~D--v~~pm 168 (347)
T KOG0647|consen 103 SGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSN----------PVATL-QLPERVYAAD--VLYPM 168 (347)
T ss_pred CCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCC----------eeeee-eccceeeehh--ccCce
Confidence 994 555678999999999976532 478999999999999998432 22111 1223344433 34568
Q ss_pred EEEEeCCCcEEEEeCCCCceEE-EE-eccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCC--ceeEEeecCCC-----
Q 004214 395 VCTGSQDRTACVWRLPDLVSVV-TF-RGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG--SCLKTFEGHTS----- 465 (768)
Q Consensus 395 l~~~~~dg~i~i~d~~~~~~~~-~~-~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~--~~~~~~~~~~~----- 465 (768)
++++..++.|.+|+++++.... .. ..-.-.+.|++..++....+.|+-.|.+-|..+..+ +.-.+|+.|..
T Consensus 169 ~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~ 248 (347)
T KOG0647|consen 169 AVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVN 248 (347)
T ss_pred eEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCC
Confidence 8999999999999997653221 11 112346889999999888899999999999999887 44455666652
Q ss_pred ----cEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEE
Q 004214 466 ----SVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATG 524 (768)
Q Consensus 466 ----~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~ 524 (768)
.|++++|+|.-..|+++|.||++.+||-+....+.+...|..+|++.+|+.+|.++|-+
T Consensus 249 ~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 249 DDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred CceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEE
Confidence 67889999999999999999999999999888999999999999999999999988744
No 113
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.95 E-value=5.7e-26 Score=217.45 Aligned_cols=252 Identities=25% Similarity=0.441 Sum_probs=213.1
Q ss_pred eeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCce----------eeeeeeCCccceEEEeeeeecCCCEEEEE
Q 004214 233 KRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMS----------CSYVLAGHSEIVLCLDTCALSSGKILIVT 302 (768)
Q Consensus 233 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~----------~~~~~~~~~~~v~~l~~~~~~~~~~~l~~ 302 (768)
.....|.++|..+.+.|.+...+|+.+..+.++|||..+-. ....+.+|...-+++. +.+.....+++
T Consensus 118 ~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~gls--Wn~~~~g~Lls 195 (422)
T KOG0264|consen 118 SQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLS--WNRQQEGTLLS 195 (422)
T ss_pred EEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccc--cccccceeEee
Confidence 34567889999999999999999999999999999986432 1226788988767776 66666667999
Q ss_pred EeCCCeEEEEeCCCc-------eEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeE
Q 004214 303 GSKDNSVRLWDSESR-------CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAV 375 (768)
Q Consensus 303 ~~~dg~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 375 (768)
|+.|++|++||+... .+...+.+|...|..++|++....+|++++.|+.+.|||++.. ..+....
T Consensus 196 ~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~--------~~~~~~~ 267 (422)
T KOG0264|consen 196 GSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN--------TSKPSHS 267 (422)
T ss_pred ccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCC--------CCCCccc
Confidence 999999999998743 2456788999999999999998889999999999999999853 2335566
Q ss_pred eeccCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCC-ceEEEEeccCCCeEEEEEccC-CCEEEEeeCCCcEEEEeCC
Q 004214 376 VAAHGKDINSLAVAP-NDSLVCTGSQDRTACVWRLPDL-VSVVTFRGHKRGIWSVEFSPV-DQVVITASGDKTIKIWSIS 452 (768)
Q Consensus 376 ~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~v~~s~~-~~~l~t~~~d~~i~iwd~~ 452 (768)
..+|...|+|++|+| ++..||+|+.|++|.+||+++. +++.++.+|...|.+|.|||. ...||+++.|+.+.|||+.
T Consensus 268 ~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls 347 (422)
T KOG0264|consen 268 VKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLS 347 (422)
T ss_pred ccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEecc
Confidence 688999999999999 7788999999999999999986 577889999999999999997 5789999999999999986
Q ss_pred CC--------------ceeEEeecCCCcEEEEEEEeCCCE-EEEEeCCCcEEEEECC
Q 004214 453 DG--------------SCLKTFEGHTSSVLRASFLTRGAQ-IVSCGADGLVKLWTVR 494 (768)
Q Consensus 453 ~~--------------~~~~~~~~~~~~v~~~~~s~~~~~-l~s~~~dg~i~iwd~~ 494 (768)
.- +++..-.||...|..+.|+|+..+ +++++.|+.+.||...
T Consensus 348 ~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 348 RIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred ccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 42 234555699999999999998875 5778889999999864
No 114
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.9e-26 Score=202.13 Aligned_cols=248 Identities=25% Similarity=0.409 Sum_probs=202.0
Q ss_pred eCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCc---eEEEeeecccCcEEEEEEe-cCCCcEEEEEeCCCeEEE
Q 004214 279 AGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR---CCVGVGTGHMGAVGAVAFS-KKLQNFLVSGSSDHTIKV 354 (768)
Q Consensus 279 ~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~-~~~~~~l~s~~~dg~i~i 354 (768)
..|.+.|..+. ..--+.. |+|++.|++|+|+..+++ .++..+.+|.+||+.++|. |.-..+|++++.||.|.+
T Consensus 8 t~H~D~IHda~--lDyygkr-lATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIi 84 (299)
T KOG1332|consen 8 TQHEDMIHDAQ--LDYYGKR-LATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVII 84 (299)
T ss_pred hhhhhhhhHhh--hhhhcce-eeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEE
Confidence 45777776664 3333555 999999999999998754 5678899999999999995 555669999999999999
Q ss_pred EeCCCCCCCCccccccceeeEeeccCCCeEEEEEccC--CCEEEEEeCCCcEEEEeCCCC---ceEEEEeccCCCeEEEE
Q 004214 355 WSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN--DSLVCTGSQDRTACVWRLPDL---VSVVTFRGHKRGIWSVE 429 (768)
Q Consensus 355 wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~v~~v~ 429 (768)
|.-.++ ..........|...|++++|.|. |-.|++++.||.|.|.+.++. ........|.-.|++++
T Consensus 85 Wke~~g--------~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVs 156 (299)
T KOG1332|consen 85 WKEENG--------RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVS 156 (299)
T ss_pred EecCCC--------chhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceee
Confidence 987755 34455566789999999999994 678999999999999998754 22334567999999999
Q ss_pred EccC---C-----------CEEEEeeCCCcEEEEeCCCC--ceeEEeecCCCcEEEEEEEeCC----CEEEEEeCCCcEE
Q 004214 430 FSPV---D-----------QVVITASGDKTIKIWSISDG--SCLKTFEGHTSSVLRASFLTRG----AQIVSCGADGLVK 489 (768)
Q Consensus 430 ~s~~---~-----------~~l~t~~~d~~i~iwd~~~~--~~~~~~~~~~~~v~~~~~s~~~----~~l~s~~~dg~i~ 489 (768)
|.|. | +.|++|+.|..|+||+..++ ..-++|.+|.+.|..++|.|.- .+|++++.||+|.
T Consensus 157 wapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~vi 236 (299)
T KOG1332|consen 157 WAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVI 236 (299)
T ss_pred ecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEE
Confidence 9996 4 56999999999999998876 3456689999999999999964 4899999999999
Q ss_pred EEECCCC--e-EEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 004214 490 LWTVRTG--E-CIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDST 537 (768)
Q Consensus 490 iwd~~~~--~-~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~ 537 (768)
||..... + ....+......++.+.||+.|+.|+.++.|..|.+|.-+.
T Consensus 237 Iwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 237 IWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred EEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 9987521 1 1223344678899999999999999999999999998654
No 115
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=4.8e-25 Score=200.54 Aligned_cols=267 Identities=22% Similarity=0.280 Sum_probs=214.5
Q ss_pred CCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCce
Q 004214 239 NEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC 318 (768)
Q Consensus 239 ~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 318 (768)
.+.|.++.|+ +..+.|++++.||.+++|+....... ..-.|..++.+.+ |. +... +++|+-||.|+.+|+.++.
T Consensus 13 ~d~IS~v~f~-~~~~~LLvssWDgslrlYdv~~~~l~-~~~~~~~plL~c~--F~-d~~~-~~~G~~dg~vr~~Dln~~~ 86 (323)
T KOG1036|consen 13 EDGISSVKFS-PSSSDLLVSSWDGSLRLYDVPANSLK-LKFKHGAPLLDCA--FA-DEST-IVTGGLDGQVRRYDLNTGN 86 (323)
T ss_pred hhceeeEEEc-CcCCcEEEEeccCcEEEEeccchhhh-hheecCCceeeee--cc-CCce-EEEeccCceEEEEEecCCc
Confidence 4578999999 67778888889999999999887444 3345788888875 44 4444 9999999999999999886
Q ss_pred EEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEE
Q 004214 319 CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTG 398 (768)
Q Consensus 319 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 398 (768)
... +..|..+|.|+.+++. ...+++|++|++|++||.+.... .........|.++.. .|+.|++|
T Consensus 87 ~~~-igth~~~i~ci~~~~~-~~~vIsgsWD~~ik~wD~R~~~~-----------~~~~d~~kkVy~~~v--~g~~LvVg 151 (323)
T KOG1036|consen 87 EDQ-IGTHDEGIRCIEYSYE-VGCVISGSWDKTIKFWDPRNKVV-----------VGTFDQGKKVYCMDV--SGNRLVVG 151 (323)
T ss_pred cee-eccCCCceEEEEeecc-CCeEEEcccCccEEEEecccccc-----------ccccccCceEEEEec--cCCEEEEe
Confidence 554 4569999999999976 44799999999999999884211 111122346666655 47789999
Q ss_pred eCCCcEEEEeCCCCceEEEEe--ccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCC----ceeEEeecCC--------
Q 004214 399 SQDRTACVWRLPDLVSVVTFR--GHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG----SCLKTFEGHT-------- 464 (768)
Q Consensus 399 ~~dg~i~i~d~~~~~~~~~~~--~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~----~~~~~~~~~~-------- 464 (768)
+.|..+.+||+++.......+ .-.-.+.|+++-|++.-.++++-||.|.+=.++.. +.-..|+.|.
T Consensus 152 ~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~ 231 (323)
T KOG1036|consen 152 TSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEI 231 (323)
T ss_pred ecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceE
Confidence 999999999999876554332 23457899999999888999999999988666655 3344566664
Q ss_pred -CcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeC
Q 004214 465 -SSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGS 526 (768)
Q Consensus 465 -~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~ 526 (768)
-+|++++|+|-...|+||+.||.|.+||+.+.+.+..+......|.+++|+.+|..||+++.
T Consensus 232 ~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 232 IYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred EEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 38999999999999999999999999999999999999888888999999999999999874
No 116
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.94 E-value=1.9e-25 Score=202.33 Aligned_cols=296 Identities=19% Similarity=0.332 Sum_probs=230.9
Q ss_pred EEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCC------------C------eeEEEecCccceeEEEEEc
Q 004214 22 CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLA------------K------KCVATLDKHFSRVTSMAIT 83 (768)
Q Consensus 22 ~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~------------~------~~~~~l~~h~~~V~~l~fs 83 (768)
....+..|++++.+-+|+|||.. +|+|+.|..|+|.|++. + -.+++|-.|...|+++.|.
T Consensus 104 Et~ylt~HK~~cR~aafs~DG~l--vATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FH 181 (430)
T KOG0640|consen 104 ETKYLTSHKSPCRAAAFSPDGSL--VATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFH 181 (430)
T ss_pred ceEEEeecccceeeeeeCCCCcE--EEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeec
Confidence 35677889999999999999987 99999999999999861 1 2467888899999999999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeee---eeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCc
Q 004214 84 SDGSTLISAGRDKVVNLWDLRDYSCK---LTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERG 160 (768)
Q Consensus 84 ~d~~~L~s~~~dg~i~vWd~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 160 (768)
|....|++++.|++|+++|+..-... +.+..-+++.++.|.|.|. +++.+.+-.
T Consensus 182 Pre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGe-----------------------fllvgTdHp 238 (430)
T KOG0640|consen 182 PRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGE-----------------------FLLVGTDHP 238 (430)
T ss_pred chhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCc-----------------------eEEEecCCC
Confidence 99999999999999999999765433 3445566788999999886 777777778
Q ss_pred EEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCC
Q 004214 161 IVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNE 240 (768)
Q Consensus 161 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (768)
.+++||+++.+.+.. ...-.+|.+
T Consensus 239 ~~rlYdv~T~Qcfvs--------------------------------------------------------anPd~qht~ 262 (430)
T KOG0640|consen 239 TLRLYDVNTYQCFVS--------------------------------------------------------ANPDDQHTG 262 (430)
T ss_pred ceeEEeccceeEeee--------------------------------------------------------cCccccccc
Confidence 888888877633211 112335778
Q ss_pred ceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeee-eCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceE
Q 004214 241 EILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVL-AGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC 319 (768)
Q Consensus 241 ~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~-~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 319 (768)
.|.++.|++ .+++.++++.||.|++||--+++|+.++ ..|.+.-.|-+ .+..++.++++.+.|..+++|.+.++++
T Consensus 263 ai~~V~Ys~-t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa--~Ftkn~kyiLsSG~DS~vkLWEi~t~R~ 339 (430)
T KOG0640|consen 263 AITQVRYSS-TGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSA--VFTKNGKYILSSGKDSTVKLWEISTGRM 339 (430)
T ss_pred ceeEEEecC-CccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeE--EEccCCeEEeecCCcceeeeeeecCCce
Confidence 899999985 7889999999999999999999999887 44665544443 4555555699999999999999999999
Q ss_pred EEeeeccc--C---cEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCE
Q 004214 320 VGVGTGHM--G---AVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSL 394 (768)
Q Consensus 320 ~~~~~~~~--~---~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 394 (768)
+..+.+-. + .-+...|+......|.---..+.+.-||-++.. +......+|++.++.+.-||.+.-
T Consensus 340 l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtad---------r~~l~slgHn~a~R~i~HSP~~p~ 410 (430)
T KOG0640|consen 340 LKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTAD---------RVALLSLGHNGAVRWIVHSPVEPA 410 (430)
T ss_pred EEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchh---------hhhhcccCCCCCceEEEeCCCCCc
Confidence 98877531 1 123345655544233333345778899988643 233344789999999999999999
Q ss_pred EEEEeCCCcEEEEeCC
Q 004214 395 VCTGSQDRTACVWRLP 410 (768)
Q Consensus 395 l~~~~~dg~i~i~d~~ 410 (768)
+++++.|..+++|--+
T Consensus 411 FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 411 FMTCSDDFRARFWYRR 426 (430)
T ss_pred eeeecccceeeeeeec
Confidence 9999999999999643
No 117
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.2e-25 Score=215.47 Aligned_cols=252 Identities=20% Similarity=0.348 Sum_probs=210.1
Q ss_pred CcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCc
Q 004214 262 EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQN 341 (768)
Q Consensus 262 ~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 341 (768)
..+.+|.+..........--.+++.|+. .++.| .+++.|+..|.|++|.+.+|..+..+.+|-..|+++.|+.||.
T Consensus 61 p~l~vw~i~k~~~~~q~~v~Pg~v~al~--s~n~G-~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs- 136 (476)
T KOG0646|consen 61 PLLHVWEILKKDQVVQYIVLPGPVHALA--SSNLG-YFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGS- 136 (476)
T ss_pred ccccccccCchhhhhhhcccccceeeee--cCCCc-eEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCc-
Confidence 4666777665554443333456788885 44444 5588888999999999999999999999999999999999977
Q ss_pred EEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccC--CCEEEEEeCCCcEEEEeCCCCceEEEEe
Q 004214 342 FLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN--DSLVCTGSQDRTACVWRLPDLVSVVTFR 419 (768)
Q Consensus 342 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 419 (768)
+|++|+.||.|.+|.+...-..... ....+...+..|.-+|+.+.+.+. ...+++++.|.++++||+..+..+.++.
T Consensus 137 ~iiTgskDg~V~vW~l~~lv~a~~~-~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~ 215 (476)
T KOG0646|consen 137 HIITGSKDGAVLVWLLTDLVSADND-HSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT 215 (476)
T ss_pred EEEecCCCccEEEEEEEeecccccC-CCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe
Confidence 8999999999999998654222111 155678888999999999998875 4689999999999999999999888876
Q ss_pred ccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCC----------------CceeEEeecCCC--cEEEEEEEeCCCEEEE
Q 004214 420 GHKRGIWSVEFSPVDQVVITASGDKTIKIWSISD----------------GSCLKTFEGHTS--SVLRASFLTRGAQIVS 481 (768)
Q Consensus 420 ~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~----------------~~~~~~~~~~~~--~v~~~~~s~~~~~l~s 481 (768)
....+.+++.+|-++.+++|+.+|.|.+.++.. +..+..+.||.+ .|+|++++-||..|++
T Consensus 216 -fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlS 294 (476)
T KOG0646|consen 216 -FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLS 294 (476)
T ss_pred -cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEe
Confidence 678899999999999999999999999988643 234566779988 9999999999999999
Q ss_pred EeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCC
Q 004214 482 CGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTE 519 (768)
Q Consensus 482 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~ 519 (768)
|+.||.|+|||+.+.++++++....++|+.+.+.|-.+
T Consensus 295 Gd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~ 332 (476)
T KOG0646|consen 295 GDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLER 332 (476)
T ss_pred eCCCCCEEEEecchHHHHHHHhhhccccceeEeecccc
Confidence 99999999999999999999987789999999966543
No 118
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.2e-25 Score=204.25 Aligned_cols=293 Identities=25% Similarity=0.365 Sum_probs=247.3
Q ss_pred eeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCC
Q 004214 228 ELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDN 307 (768)
Q Consensus 228 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg 307 (768)
...+.+.+.||.+.|..++.-. ..+.+.+++.|.+.+||.++++.|+..+.||.+.|.|+. +.+.+ .++++++.|+
T Consensus 137 ~~~lvre~~GHkDGiW~Vaa~~-tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsik--fh~s~-~L~lTaSGD~ 212 (481)
T KOG0300|consen 137 KFRLVRELEGHKDGIWHVAADS-TQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIK--FHNSG-LLLLTASGDE 212 (481)
T ss_pred eEeehhhhcccccceeeehhhc-CCcceeecccccceeEEeeccccceeeecccccceeeEE--ecccc-ceEEEccCCc
Confidence 3445677889999999998764 445889999999999999999999999999999999996 55544 5699999999
Q ss_pred eEEEEeC------CC----------------------------------ceEEEeeecccCcEEEEEEecCCCcEEEEEe
Q 004214 308 SVRLWDS------ES----------------------------------RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGS 347 (768)
Q Consensus 308 ~i~iwd~------~~----------------------------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~ 347 (768)
+-.||.. .. ..++..+.+|.+.|.+..|...|+ .+++++
T Consensus 213 taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~-Q~vTaS 291 (481)
T KOG0300|consen 213 TAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQ-QMVTAS 291 (481)
T ss_pred chHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcc-eeeeee
Confidence 9999951 00 124556789999999999988766 699999
Q ss_pred CCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC-ceEEEEeccCCCeE
Q 004214 348 SDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDL-VSVVTFRGHKRGIW 426 (768)
Q Consensus 348 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~ 426 (768)
+|.+-.+||+..+ .....+.+|....+.++-+|..+++++++.|.+.++||++.. ..+..|+||...|+
T Consensus 292 WDRTAnlwDVEtg----------e~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVT 361 (481)
T KOG0300|consen 292 WDRTANLWDVETG----------EVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVT 361 (481)
T ss_pred ccccceeeeeccC----------ceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeeccccccee
Confidence 9999999999844 467778899999999999999999999999999999999854 45778999999999
Q ss_pred EEEEccCCCEEEEeeCCCcEEEEeCCCC-ceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEe---
Q 004214 427 SVEFSPVDQVVITASGDKTIKIWSISDG-SCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATY--- 502 (768)
Q Consensus 427 ~v~~s~~~~~l~t~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--- 502 (768)
++.|..+. .+++|+.|.+|+|||+++. .++.++. ...+++.++.+..+..++.--.+..|++||+... .+..+
T Consensus 362 S~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~-RlaRlPrt 438 (481)
T KOG0300|consen 362 SVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGN-RLARLPRT 438 (481)
T ss_pred EEEEecCC-ceeecCCCceEEEeeeccccCcceeee-cCCccceeEeecCCceEEeccCCceEEEEecCCC-ccccCCcc
Confidence 99999855 5889999999999999875 4677776 6788999999998889999888999999998543 33333
Q ss_pred --ccCCCcEEEEEEcCCC--CEEEEEeCCCcEEEEEcCCH
Q 004214 503 --DKHEDKIWALAVGKKT--EMFATGGSDALVNLWHDSTA 538 (768)
Q Consensus 503 --~~~~~~v~~l~~s~~~--~~l~s~~~dg~v~vw~~~~~ 538 (768)
.+|..-|+|++|..+. .-|+++|-|..+.=|+++++
T Consensus 439 sRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 439 SRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred cccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 4788889999998653 45889999999999998865
No 119
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=7.1e-25 Score=210.17 Aligned_cols=238 Identities=20% Similarity=0.276 Sum_probs=193.2
Q ss_pred ceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCC-----
Q 004214 241 EILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSE----- 315 (768)
Q Consensus 241 ~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~----- 315 (768)
++.+++-+ +.+.+++.|+..|.+++|.+.+|..+..+..|-..|+|+. +..++.. |++|++||.|.+|.+.
T Consensus 83 ~v~al~s~-n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~--fs~dgs~-iiTgskDg~V~vW~l~~lv~a 158 (476)
T KOG0646|consen 83 PVHALASS-NLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLK--FSDDGSH-IITGSKDGAVLVWLLTDLVSA 158 (476)
T ss_pred ceeeeecC-CCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEE--EeCCCcE-EEecCCCccEEEEEEEeeccc
Confidence 44444444 4677888888999999999999999999999999999996 6666655 9999999999999753
Q ss_pred ----CceEEEeeecccCcEEEEEEecCC-CcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEcc
Q 004214 316 ----SRCCVGVGTGHMGAVGAVAFSKKL-QNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP 390 (768)
Q Consensus 316 ----~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 390 (768)
+-.+...+..|+-+|+.+...+.+ ...+++++.|.++++||+..+ ........+..+.+++++|
T Consensus 159 ~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g-----------~LLlti~fp~si~av~lDp 227 (476)
T KOG0646|consen 159 DNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG-----------VLLLTITFPSSIKAVALDP 227 (476)
T ss_pred ccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccc-----------eeeEEEecCCcceeEEEcc
Confidence 356788899999999999998763 347999999999999999865 2233344667899999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCC----------------ceEEEEeccCC--CeEEEEEccCCCEEEEeeCCCcEEEEeCC
Q 004214 391 NDSLVCTGSQDRTACVWRLPDL----------------VSVVTFRGHKR--GIWSVEFSPVDQVVITASGDKTIKIWSIS 452 (768)
Q Consensus 391 ~~~~l~~~~~dg~i~i~d~~~~----------------~~~~~~~~~~~--~v~~v~~s~~~~~l~t~~~d~~i~iwd~~ 452 (768)
.++.+.+|+.+|.|.+.++... ..+..+.||.. +|+|++++-||.+|++|+.||.|+|||+.
T Consensus 228 ae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~ 307 (476)
T KOG0646|consen 228 AERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIY 307 (476)
T ss_pred cccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecc
Confidence 9999999999999999887432 34567778988 99999999999999999999999999999
Q ss_pred CCceeEEeecCCCcEEEEEEEeCCCEEEEE-eCCCcEEEEEC
Q 004214 453 DGSCLKTFEGHTSSVLRASFLTRGAQIVSC-GADGLVKLWTV 493 (768)
Q Consensus 453 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~-~~dg~i~iwd~ 493 (768)
+.++++++....++|+.+.+.|-.+-.+.+ +....+-.|++
T Consensus 308 S~Q~iRtl~~~kgpVtnL~i~~~~~~~~l~~~~~ps~~~~~l 349 (476)
T KOG0646|consen 308 SKQCIRTLQTSKGPVTNLQINPLERGIILFEHKQPSLPNPHL 349 (476)
T ss_pred hHHHHHHHhhhccccceeEeeccccceecccccCccCCchHh
Confidence 999999998788999999997754433332 22234444443
No 120
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.94 E-value=1.8e-24 Score=213.93 Aligned_cols=233 Identities=17% Similarity=0.270 Sum_probs=172.6
Q ss_pred EeCCCeEEEEeCCCceEEE--eee--cccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeec
Q 004214 303 GSKDNSVRLWDSESRCCVG--VGT--GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAA 378 (768)
Q Consensus 303 ~~~dg~i~iwd~~~~~~~~--~~~--~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 378 (768)
++..|.|-||+++..-.+. .+. .....|+.+.|.|-....|++++.||.|++|.+..+.... ....+...+..
T Consensus 599 ~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e---~~~tPe~~lt~ 675 (1012)
T KOG1445|consen 599 AGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPE---NEMTPEKILTI 675 (1012)
T ss_pred cCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCc---ccCCcceeeec
Confidence 4557889999886422111 111 1346799999999878889999999999999998654322 23446667788
Q ss_pred cCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCc-e
Q 004214 379 HGKDINSLAVAP-NDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGS-C 456 (768)
Q Consensus 379 ~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~-~ 456 (768)
|...|+++.|+| -...|+++++|.+|++||+.+++....+.+|.+.|..++|||+|+.+|+.+.||+|++|+.+++. +
T Consensus 676 h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~p 755 (1012)
T KOG1445|consen 676 HGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQP 755 (1012)
T ss_pred ccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCc
Confidence 999999999999 56789999999999999999999999999999999999999999999999999999999988764 4
Q ss_pred eEEeecCC-CcEEEEEEEeCCCEEEEEeCCC----cEEEEECCCC--eEEEEe--ccCCCcEEEEEEcCCCC-EEEEEeC
Q 004214 457 LKTFEGHT-SSVLRASFLTRGAQIVSCGADG----LVKLWTVRTG--ECIATY--DKHEDKIWALAVGKKTE-MFATGGS 526 (768)
Q Consensus 457 ~~~~~~~~-~~v~~~~~s~~~~~l~s~~~dg----~i~iwd~~~~--~~~~~~--~~~~~~v~~l~~s~~~~-~l~s~~~ 526 (768)
++.-.+.. ..--.+.|.-+|+++++.+.|. .|.+||..+- .++.+. +.-... .--.+.+|.. .+++|-.
T Consensus 756 v~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~-LvP~YD~Ds~~lfltGKG 834 (1012)
T KOG1445|consen 756 VYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSP-LVPHYDYDSNVLFLTGKG 834 (1012)
T ss_pred cccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCcc-ccccccCCCceEEEecCC
Confidence 44433322 2335688999999998887764 6888887653 233322 111111 1112344444 5678888
Q ss_pred CCcEEEEEcCCHH
Q 004214 527 DALVNLWHDSTAA 539 (768)
Q Consensus 527 dg~v~vw~~~~~~ 539 (768)
|..|.+|++..+.
T Consensus 835 D~~v~~yEv~~es 847 (1012)
T KOG1445|consen 835 DRFVNMYEVIYES 847 (1012)
T ss_pred CceEEEEEecCCC
Confidence 9999999976543
No 121
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=5.2e-25 Score=200.37 Aligned_cols=312 Identities=20% Similarity=0.278 Sum_probs=207.9
Q ss_pred EEEEECCCCee-----EEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeee-----eeecceeEeeEEecC
Q 004214 56 VRVWDLLAKKC-----VATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKL-----TVPTYEMVEAVCAIP 125 (768)
Q Consensus 56 I~iWd~~~~~~-----~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~~~~~~~-----~~~~~~~v~~~~~~~ 125 (768)
+.-|+....+. +..|++|...|++++|+.||++|+|++.|+.|++|++++..... .--.....
T Consensus 63 ~~~~k~~q~~f~Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhp------- 135 (420)
T KOG2096|consen 63 NDQWKAKQPTFVHPLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHP------- 135 (420)
T ss_pred hhhhcccCCCcccchhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCc-------
Confidence 45566544433 35678999999999999999999999999999999998743211 10111123
Q ss_pred CCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCce
Q 004214 126 PGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGL 205 (768)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 205 (768)
+.+.|.|+-..+
T Consensus 136 --------------------------------------------------------------------T~V~FapDc~s~ 147 (420)
T KOG2096|consen 136 --------------------------------------------------------------------TRVVFAPDCKSV 147 (420)
T ss_pred --------------------------------------------------------------------eEEEECCCcceE
Confidence 333444444433
Q ss_pred EEEE-ecCeEEEEeeccCcccceeeEEEe-----eecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeee
Q 004214 206 LCVT-ADQQLLLYTTVEVPEKKMELILSK-----RLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLA 279 (768)
Q Consensus 206 ~~~~-~dg~i~~~~~~~~~~~~~~~~~~~-----~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~ 279 (768)
+... ..+.+++|................ -..-|.-.+.++-.. .+..++++++.+..|.+|++. |+.+..+.
T Consensus 148 vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA-~~~k~imsas~dt~i~lw~lk-Gq~L~~id 225 (420)
T KOG2096|consen 148 VVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIA-GNAKYIMSASLDTKICLWDLK-GQLLQSID 225 (420)
T ss_pred EEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeec-CCceEEEEecCCCcEEEEecC-Cceeeeec
Confidence 2222 333455554443332221111111 111233334443332 577899999999999999999 77766665
Q ss_pred CCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCC---Cc-----eEEEeeecccCcEEEEEEecCCCcEEEEEeCCCe
Q 004214 280 GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSE---SR-----CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHT 351 (768)
Q Consensus 280 ~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~---~~-----~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~ 351 (768)
.....-+..+ .+|+|+. +++++-.--|++|.+- .| ..+..+++|...|..++|+++.. .+++.+.||+
T Consensus 226 tnq~~n~~aa--vSP~GRF-ia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~-r~vtvSkDG~ 301 (420)
T KOG2096|consen 226 TNQSSNYDAA--VSPDGRF-IAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSST-RAVTVSKDGK 301 (420)
T ss_pred ccccccccee--eCCCCcE-EEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcc-eeEEEecCCc
Confidence 4433333333 5566654 8888888899999853 22 23456789999999999999955 7999999999
Q ss_pred EEEEeCCCCCCCCcccccccee-eEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEe-ccCCCeEEEE
Q 004214 352 IKVWSFDGLSDDAEQPMNLKAK-AVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFR-GHKRGIWSVE 429 (768)
Q Consensus 352 i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~v~ 429 (768)
+++||.+-.....+.+..++.- ............++++|+|+.||.+. ...+++|..++++....+. .|...|++++
T Consensus 302 wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is 380 (420)
T KOG2096|consen 302 WRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSIS 380 (420)
T ss_pred EEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEE
Confidence 9999987543333333222222 22223344455899999999988765 4689999999987766654 4899999999
Q ss_pred EccCCCEEEEeeCCCcEEEEe
Q 004214 430 FSPVDQVVITASGDKTIKIWS 450 (768)
Q Consensus 430 ~s~~~~~l~t~~~d~~i~iwd 450 (768)
|+++|+++++++ |+.++++.
T Consensus 381 ~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 381 YSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred ecCCCcEEeeec-ceeeeeec
Confidence 999999999986 48888876
No 122
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=1.7e-24 Score=196.98 Aligned_cols=270 Identities=21% Similarity=0.323 Sum_probs=222.2
Q ss_pred cccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEE
Q 004214 189 SKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYD 268 (768)
Q Consensus 189 ~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d 268 (768)
+...+..+.|+|..+.|++++-||.+++|+.... ..+....+..++++++|. +...+++|+-||.|+.+|
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~--------~l~~~~~~~~plL~c~F~--d~~~~~~G~~dg~vr~~D 81 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPAN--------SLKLKFKHGAPLLDCAFA--DESTIVTGGLDGQVRRYD 81 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccch--------hhhhheecCCceeeeecc--CCceEEEeccCceEEEEE
Confidence 3578899999999999999999999999998765 223445678899999997 477999999999999999
Q ss_pred CCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeC
Q 004214 269 LSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSS 348 (768)
Q Consensus 269 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~ 348 (768)
+.++... .+..|..++.|+. .....+. +++|+.|++|++||.+.......+. ....|.++....+ .|++|+.
T Consensus 82 ln~~~~~-~igth~~~i~ci~--~~~~~~~-vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v~g~---~LvVg~~ 153 (323)
T KOG1036|consen 82 LNTGNED-QIGTHDEGIRCIE--YSYEVGC-VISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDVSGN---RLVVGTS 153 (323)
T ss_pred ecCCcce-eeccCCCceEEEE--eeccCCe-EEEcccCccEEEEeccccccccccc-cCceEEEEeccCC---EEEEeec
Confidence 9988766 6778999999998 5555555 9999999999999999755555544 3347888877654 7999999
Q ss_pred CCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC----ceEEEEeccC--
Q 004214 349 DHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDL----VSVVTFRGHK-- 422 (768)
Q Consensus 349 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~-- 422 (768)
|..|.+||++...... ........-.++|+++-|++.-+++++-||.|.+=.++.. +....|+.|.
T Consensus 154 ~r~v~iyDLRn~~~~~--------q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~ 225 (323)
T KOG1036|consen 154 DRKVLIYDLRNLDEPF--------QRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLS 225 (323)
T ss_pred CceEEEEEcccccchh--------hhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecc
Confidence 9999999999764322 1111223346899999999888999999999988777655 4445667664
Q ss_pred -------CCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeC
Q 004214 423 -------RGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGA 484 (768)
Q Consensus 423 -------~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 484 (768)
.||++++|+|-...|+||+.||.|.+||+.+.+.+..+......|..++|+.+|..||+++.
T Consensus 226 ~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 226 EKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred cCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 37999999999999999999999999999999999999888888999999999999999875
No 123
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=2.7e-23 Score=179.86 Aligned_cols=285 Identities=20% Similarity=0.288 Sum_probs=227.9
Q ss_pred ccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCC------ce---------eeeeeeCCccceEEEeeeeecCCCEEEE
Q 004214 237 GYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSS------MS---------CSYVLAGHSEIVLCLDTCALSSGKILIV 301 (768)
Q Consensus 237 ~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~------~~---------~~~~~~~~~~~v~~l~~~~~~~~~~~l~ 301 (768)
.....|..++|.| .+.+.++|++..++++..... +. ..+.-..|.+.|+|.+ |++.+. +++
T Consensus 30 ~dsqairav~fhp-~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~--ws~~ge-lia 105 (350)
T KOG0641|consen 30 EDSQAIRAVAFHP-AGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTA--WSPCGE-LIA 105 (350)
T ss_pred cchhheeeEEecC-CCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEE--ecCccC-eEE
Confidence 3455788899885 778999999999998864321 11 1122356889999996 666666 499
Q ss_pred EEeCCCeEEEEeCCCceEE-----EeeecccCcEEEEEEecC---CCcEEEEEe-CCCeEEEEeCCCCCCCCccccccce
Q 004214 302 TGSKDNSVRLWDSESRCCV-----GVGTGHMGAVGAVAFSKK---LQNFLVSGS-SDHTIKVWSFDGLSDDAEQPMNLKA 372 (768)
Q Consensus 302 ~~~~dg~i~iwd~~~~~~~-----~~~~~~~~~v~~~~~~~~---~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~ 372 (768)
+|++|.+|++..++...+. ..+..|.+.|..++|..+ +..+|++++ .|..|.+-|...+ ..
T Consensus 106 tgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g----------~~ 175 (350)
T KOG0641|consen 106 TGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRG----------QG 175 (350)
T ss_pred ecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCC----------Cc
Confidence 9999999999876643332 246779999999999643 334566554 4666666666533 35
Q ss_pred eeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEec--c-----CCCeEEEEEccCCCEEEEeeCCCc
Q 004214 373 KAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG--H-----KRGIWSVEFSPVDQVVITASGDKT 445 (768)
Q Consensus 373 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~-----~~~v~~v~~s~~~~~l~t~~~d~~ 445 (768)
...+.+|.+.|.++ ++-+|-++++|+.|.+|++||++-...+.++.. | ...|.+++..|.|++|++|-.|..
T Consensus 176 ~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dss 254 (350)
T KOG0641|consen 176 FHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSS 254 (350)
T ss_pred ceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCc
Confidence 66678899998876 456789999999999999999998877776653 2 357999999999999999999999
Q ss_pred EEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCC----eEEEEeccCCCcEEEEEEcCCCCEE
Q 004214 446 IKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTG----ECIATYDKHEDKIWALAVGKKTEMF 521 (768)
Q Consensus 446 i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~l~~s~~~~~l 521 (768)
..+||++.+++++.|..|...|.++.|+|...|+++++.|..|++-|++.. -++.....|.+.+..+.|+|..-.+
T Consensus 255 c~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sf 334 (350)
T KOG0641|consen 255 CMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSF 334 (350)
T ss_pred eEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCcccee
Confidence 999999999999999999999999999999999999999999999998632 2344445699999999999999999
Q ss_pred EEEeCCCcEEEEEcC
Q 004214 522 ATGGSDALVNLWHDS 536 (768)
Q Consensus 522 ~s~~~dg~v~vw~~~ 536 (768)
++.+.|.++.+|-++
T Consensus 335 isssadkt~tlwa~~ 349 (350)
T KOG0641|consen 335 ISSSADKTATLWALN 349 (350)
T ss_pred eeccCcceEEEeccC
Confidence 999999999999764
No 124
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.94 E-value=1.9e-24 Score=194.66 Aligned_cols=255 Identities=18% Similarity=0.266 Sum_probs=200.2
Q ss_pred cccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCC
Q 004214 236 VGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSE 315 (768)
Q Consensus 236 ~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~ 315 (768)
.+|.-.|.++.|.|-+..++.+++-|..+++||..+.+....+.- .+.|++-++........++++|..+-.|++-|+.
T Consensus 98 ~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~m-e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~ 176 (397)
T KOG4283|consen 98 NGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKM-EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIA 176 (397)
T ss_pred ccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEeec-CceeehhhcChhhhcceEEEEecCCCcEEEEecc
Confidence 356678899999999999999999999999999999887766543 3444444433334445679999999999999999
Q ss_pred CceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCC-----CccccccceeeEeeccCCCeEEEEEcc
Q 004214 316 SRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDD-----AEQPMNLKAKAVVAAHGKDINSLAVAP 390 (768)
Q Consensus 316 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~~~i~~~~~s~ 390 (768)
+|.....+.+|.+.|.++.|+|....+|++|+.||.|++||++..... ..............+|.+.++.++|+.
T Consensus 177 SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tS 256 (397)
T KOG4283|consen 177 SGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTS 256 (397)
T ss_pred CCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecc
Confidence 999999999999999999999998889999999999999999865211 111112222334567999999999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCceEEEEec---cCC----CeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecC
Q 004214 391 NDSLVCTGSQDRTACVWRLPDLVSVVTFRG---HKR----GIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGH 463 (768)
Q Consensus 391 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~----~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~ 463 (768)
++.++++.+.|..+++|+..+|+....-.+ |.. .+. +. +.+...++---.++.+.++++-+|..++.+.+|
T Consensus 257 d~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h 334 (397)
T KOG4283|consen 257 DARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTH 334 (397)
T ss_pred cchhhhhccCccceEEeecccCcccccccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeecc
Confidence 999999999999999999987753221111 111 111 22 333344444445689999999999999999999
Q ss_pred CCcEEEEEEEeCCCEEEEEeCCCcEEEEEC
Q 004214 464 TSSVLRASFLTRGAQIVSCGADGLVKLWTV 493 (768)
Q Consensus 464 ~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 493 (768)
-..+.+..+-|+-+...+|+.|+.|..|-+
T Consensus 335 ~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 335 LKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred cceeeEEeecCchhhhhccccCCccccccc
Confidence 999999999999999999999999999976
No 125
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.94 E-value=5.4e-23 Score=209.90 Aligned_cols=288 Identities=17% Similarity=0.162 Sum_probs=203.1
Q ss_pred EEEeecCCCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEE
Q 004214 2 FALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMA 81 (768)
Q Consensus 2 ~latg~~dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~ 81 (768)
++++++.|+.|.+||..+++.+..+.+|.. +.+++|+|+++. ++++++.++.|++||..+++.+..+..+.. +..++
T Consensus 3 ~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~-l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~ 79 (300)
T TIGR03866 3 AYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKL-LYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFA 79 (300)
T ss_pred EEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCE-EEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEE
Confidence 578899999999999999999999887654 678999999875 346778899999999999998887776544 56789
Q ss_pred EcCCCCEEEEE-eCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCc
Q 004214 82 ITSDGSTLISA-GRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERG 160 (768)
Q Consensus 82 fs~d~~~L~s~-~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 160 (768)
|+|+++.++++ +.++.|++||+.+++.+..++....+.
T Consensus 80 ~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~----------------------------------------- 118 (300)
T TIGR03866 80 LHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPE----------------------------------------- 118 (300)
T ss_pred ECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcc-----------------------------------------
Confidence 99999987655 568999999998766554443211112
Q ss_pred EEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCC
Q 004214 161 IVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNE 240 (768)
Q Consensus 161 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (768)
T Consensus 119 -------------------------------------------------------------------------------- 118 (300)
T TIGR03866 119 -------------------------------------------------------------------------------- 118 (300)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceeEEEEecCCCCEEEEEeCCC-cEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceE
Q 004214 241 EILDLKFLGEEEQYLAVATNIE-QVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC 319 (768)
Q Consensus 241 ~i~~~~~~~~~~~~l~~~~~~~-~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 319 (768)
.++|+ +++.+++++..++ .+.+||..++.....+.... .+.++. +.+++..+++++..++.|++||+.+++.
T Consensus 119 ---~~~~~-~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~-~~~~~~--~s~dg~~l~~~~~~~~~v~i~d~~~~~~ 191 (300)
T TIGR03866 119 ---GMAVS-PDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQ-RPRFAE--FTADGKELWVSSEIGGTVSVIDVATRKV 191 (300)
T ss_pred ---eEEEC-CCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCC-CccEEE--ECCCCCEEEEEcCCCCEEEEEEcCccee
Confidence 22222 2333444444332 34455665555443332221 233444 6677777556666799999999999887
Q ss_pred EEeeeccc-----C--cEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCC
Q 004214 320 VGVGTGHM-----G--AVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND 392 (768)
Q Consensus 320 ~~~~~~~~-----~--~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 392 (768)
+..+..+. . ....++|+|+++..+++.+.++.+.+||+.... .... ..+...+.+++|+|+|
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~----------~~~~-~~~~~~~~~~~~~~~g 260 (300)
T TIGR03866 192 IKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYE----------VLDY-LLVGQRVWQLAFTPDE 260 (300)
T ss_pred eeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCc----------EEEE-EEeCCCcceEEECCCC
Confidence 76654321 1 234688999988555666667889999986431 1111 1244578899999999
Q ss_pred CEEEEE-eCCCcEEEEeCCCCceEEEEeccCCCeEEEEEcc
Q 004214 393 SLVCTG-SQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSP 432 (768)
Q Consensus 393 ~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~ 432 (768)
++|+++ ..+|.|.+||+.+++.+..+... ...+.++++|
T Consensus 261 ~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 261 KYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred CEEEEEcCCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence 999886 46899999999999999988754 5558888875
No 126
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=5.4e-22 Score=205.59 Aligned_cols=482 Identities=16% Similarity=0.204 Sum_probs=315.0
Q ss_pred EEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCC---CEEEEEeCCCeEE
Q 004214 23 THYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDG---STLISAGRDKVVN 99 (768)
Q Consensus 23 ~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~---~~L~s~~~dg~i~ 99 (768)
...+.|-...-..-.||+|+++ ++. ..+..|.||...+|.++..+.+|..+++.+.+.|.. .++++++.||.|+
T Consensus 9 ~~~lgg~n~~~~~avfSnD~k~--l~~-~~~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~ 85 (792)
T KOG1963|consen 9 PALLGGRNGNKSPAVFSNDAKF--LFL-CTGNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIR 85 (792)
T ss_pred eeeeccccceecccccccCCcE--EEE-eeCCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEE
Confidence 3345555555555678999886 333 345679999999999999999999999999998754 4788999999999
Q ss_pred EEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCc----eeeee
Q 004214 100 LWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSA----CLYEQ 175 (768)
Q Consensus 100 vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~----~~~~~ 175 (768)
+||+..+.+++++...-++..+.+.|.-.... ...++....-..+........ .....
T Consensus 86 vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s------------------~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~ 147 (792)
T KOG1963|consen 86 VWDWSDGELLKTFDNNLPVHALVYKPAQADIS------------------ANVYVSVEDYSILTTFSKKLSKQSSRFVLA 147 (792)
T ss_pred EecCCCcEEEEEEecCCceeEEEechhHhCcc------------------ceeEeecccceeeeecccccccceeeeEee
Confidence 99999999999998877776666543211100 000011111111111111000 00000
Q ss_pred cCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEE
Q 004214 176 KSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYL 255 (768)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 255 (768)
........+ .........+..++.+ .+..+..+..+.+|....... ..........|.-.+.+.+++ +++.++
T Consensus 148 t~~~~~~d~--~~~~~~~~~I~~~~~g-e~~~i~~~~~~~~~~v~~~~~---~~~~~~~~~~Htf~~t~~~~s-pn~~~~ 220 (792)
T KOG1963|consen 148 TFDSAKGDF--LKEHQEPKSIVDNNSG-EFKGIVHMCKIHIYFVPKHTK---HTSSRDITVHHTFNITCVALS-PNERYL 220 (792)
T ss_pred eccccchhh--hhhhcCCccEEEcCCc-eEEEEEEeeeEEEEEecccce---eeccchhhhhhcccceeEEec-cccceE
Confidence 000000000 0000012333344444 344455566677777665431 111122223344446777776 589999
Q ss_pred EEEeCCCcEEEEECCC----ceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEE
Q 004214 256 AVATNIEQVQVYDLSS----MSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVG 331 (768)
Q Consensus 256 ~~~~~~~~i~i~d~~~----~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 331 (768)
|+|..+|+|.+|.--. ......+.-|...|.++. |.++|.. |++|+..|.+.+|.+.+++ ...+..-.++|.
T Consensus 221 Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~--fS~~G~~-LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~ 296 (792)
T KOG1963|consen 221 AAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLS--FSSDGAY-LLSGGREGVLVLWQLETGK-KQFLPRLGSPIL 296 (792)
T ss_pred EEeccCCcEEEEeccccccccccceEEEecccccceeE--EecCCce-EeecccceEEEEEeecCCC-cccccccCCeeE
Confidence 9999999999997443 223456788999999998 8888887 9999999999999999988 555666788999
Q ss_pred EEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccce-eeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 004214 332 AVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKA-KAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLP 410 (768)
Q Consensus 332 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~ 410 (768)
.+.++|++. +.+....|+.|.+.................+ ........+-.+.++++|.-+.++..+..|.|.+||+-
T Consensus 297 ~i~vS~ds~-~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~ 375 (792)
T KOG1963|consen 297 HIVVSPDSD-LYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLY 375 (792)
T ss_pred EEEEcCCCC-eEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEecc
Confidence 999999976 6777778999999887544221111000000 00112233456788999977788888999999999998
Q ss_pred CCceEEEEec-----------cCCCeEEEEEccCCCEEEEeeC--------C--CcEEEEeCCCCce----eEE-eecCC
Q 004214 411 DLVSVVTFRG-----------HKRGIWSVEFSPVDQVVITASG--------D--KTIKIWSISDGSC----LKT-FEGHT 464 (768)
Q Consensus 411 ~~~~~~~~~~-----------~~~~v~~v~~s~~~~~l~t~~~--------d--~~i~iwd~~~~~~----~~~-~~~~~ 464 (768)
+...+..+.. +..++++++.+..|.+++|.-. | -.+++|-...... ... ...|.
T Consensus 376 td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~ 455 (792)
T KOG1963|consen 376 TDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHG 455 (792)
T ss_pred ccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCC
Confidence 7766655442 2235788888888999998642 3 3478887654332 222 23677
Q ss_pred CcEEEEEEEeC--CCEEEEEeCCCcEEEEECCCC----------eEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEE
Q 004214 465 SSVLRASFLTR--GAQIVSCGADGLVKLWTVRTG----------ECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNL 532 (768)
Q Consensus 465 ~~v~~~~~s~~--~~~l~s~~~dg~i~iwd~~~~----------~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~v 532 (768)
..+...+|.+. ....++++.||.++||-+... .|...-..|..++++++|+.||. +++.+.|+.|.+
T Consensus 456 ~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGs-lla~s~~~~Iti 534 (792)
T KOG1963|consen 456 NAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGS-LLAVSFDDTITI 534 (792)
T ss_pred ceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCc-EEEEecCCEEEE
Confidence 77766666543 337899999999999987322 23333334889999999999995 555667889999
Q ss_pred EEcCCH
Q 004214 533 WHDSTA 538 (768)
Q Consensus 533 w~~~~~ 538 (768)
||..+.
T Consensus 535 wd~~~~ 540 (792)
T KOG1963|consen 535 WDYDTK 540 (792)
T ss_pred ecCCCh
Confidence 999985
No 127
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.93 E-value=6.7e-24 Score=191.09 Aligned_cols=295 Identities=22% Similarity=0.351 Sum_probs=224.2
Q ss_pred EEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCe------------eE---EEecCccceeEEEEEcC-CCCEE
Q 004214 26 FKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK------------CV---ATLDKHFSRVTSMAITS-DGSTL 89 (768)
Q Consensus 26 l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~------------~~---~~l~~h~~~V~~l~fs~-d~~~L 89 (768)
.+.|.+.|.++.+.|. ...++++|+.||.|.|||+++.. ++ ..-.+|.-.|.++.|-| |...+
T Consensus 39 ~r~HgGsvNsL~id~t-egrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmF 117 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLT-EGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMF 117 (397)
T ss_pred eccCCCccceeeeccc-cceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCcee
Confidence 3469999999999885 23459999999999999997543 11 11246888999999999 55677
Q ss_pred EEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCC
Q 004214 90 ISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADS 169 (768)
Q Consensus 90 ~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~ 169 (768)
.+++-|.+++|||..+.+....+...+.+...+++|-.
T Consensus 118 tssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a------------------------------------------ 155 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMA------------------------------------------ 155 (397)
T ss_pred ecccccceEEEeecccceeeEEeecCceeehhhcChhh------------------------------------------
Confidence 78889999999999998876666655444443333311
Q ss_pred ceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEec
Q 004214 170 ACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLG 249 (768)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 249 (768)
T Consensus 156 -------------------------------------------------------------------------------- 155 (397)
T KOG4283|consen 156 -------------------------------------------------------------------------------- 155 (397)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCc-eEEEe------
Q 004214 250 EEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR-CCVGV------ 322 (768)
Q Consensus 250 ~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~------ 322 (768)
...-++|+|+.+.+|++.|+.+|.+...+.+|.+.|.++. +.|.....|++|+.||.|++||++.. .+...
T Consensus 156 ~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~--Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~ 233 (397)
T KOG4283|consen 156 MSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVE--WSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNT 233 (397)
T ss_pred hcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEE--eccCceeEEEecCCCceEEEEEeecccceeEEeecccC
Confidence 1223788899999999999999999999999999999999 77888999999999999999998753 22222
Q ss_pred --------eecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCE
Q 004214 323 --------GTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSL 394 (768)
Q Consensus 323 --------~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 394 (768)
-..|.+.|..++|+.++. ++++.+.|..+++|+...+.............. ..| -.+. +. +-+...
T Consensus 234 k~~p~~~~n~ah~gkvngla~tSd~~-~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~--~~~-~~~~-~~-~~~s~v 307 (397)
T KOG4283|consen 234 KRPPILKTNTAHYGKVNGLAWTSDAR-YLASCGTDDRIRVWNMESGRNTLREFGPIIHNQ--TTS-FAVH-IQ-SMDSDV 307 (397)
T ss_pred ccCccccccccccceeeeeeecccch-hhhhccCccceEEeecccCcccccccccccccc--ccc-ceEE-Ee-ecccce
Confidence 236788999999999977 789999999999999987754322111000000 000 0111 22 223344
Q ss_pred EEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeC
Q 004214 395 VCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSI 451 (768)
Q Consensus 395 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~ 451 (768)
++.--.++.+.++++-.+..+..+.+|...|.|.++-|+-+...+|..|+.|..|-.
T Consensus 308 fv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 308 FVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred EEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhccccCCccccccc
Confidence 444456689999999999999999999999999999999999999999999999986
No 128
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.1e-23 Score=191.88 Aligned_cols=290 Identities=17% Similarity=0.273 Sum_probs=214.7
Q ss_pred eeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceee--eee--eCCccceEEEeeeeecCCCEEEEEEeCCCe
Q 004214 233 KRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCS--YVL--AGHSEIVLCLDTCALSSGKILIVTGSKDNS 308 (768)
Q Consensus 233 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~--~~~--~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~ 308 (768)
..+.+|...|++++|++ +++.|++++.|+.|++|++...... +.+ .-.-+..+.+. |.++.+.++++.....+
T Consensus 80 ~~LKgH~~~vt~~~FsS-dGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~--FapDc~s~vv~~~~g~~ 156 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSS-DGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVV--FAPDCKSVVVSVKRGNK 156 (420)
T ss_pred hhhhccCCceeeeEEcC-CCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEE--ECCCcceEEEEEccCCE
Confidence 45789999999999985 8899999999999999999864321 111 01112234444 77888887777777889
Q ss_pred EEEEeCCCce---E---------EEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEe
Q 004214 309 VRLWDSESRC---C---------VGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVV 376 (768)
Q Consensus 309 i~iwd~~~~~---~---------~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 376 (768)
+++|.+...+ . ......|.-.+..+-.... ..++++++.|..|.+|++.+. .....
T Consensus 157 l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~-~k~imsas~dt~i~lw~lkGq-----------~L~~i 224 (420)
T KOG2096|consen 157 LCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGN-AKYIMSASLDTKICLWDLKGQ-----------LLQSI 224 (420)
T ss_pred EEEEEeeecccCCCCcccccccccccchhcccceEEEeecCC-ceEEEEecCCCcEEEEecCCc-----------eeeee
Confidence 9999764321 1 1112235556666666555 458999999999999999732 22233
Q ss_pred eccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC---C-----CceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEE
Q 004214 377 AAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLP---D-----LVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKI 448 (768)
Q Consensus 377 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~---~-----~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~i 448 (768)
......-...++||+|+++++++----|++|.+- + -..+..++||...|..++|+|+.+.+++.+.||+++|
T Consensus 225 dtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wri 304 (420)
T KOG2096|consen 225 DTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRI 304 (420)
T ss_pred ccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEE
Confidence 3333445678899999999999998899999862 2 2456678999999999999999999999999999999
Q ss_pred EeCCC-------CceeEEee----cCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEec-cCCCcEEEEEEcC
Q 004214 449 WSISD-------GSCLKTFE----GHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD-KHEDKIWALAVGK 516 (768)
Q Consensus 449 wd~~~-------~~~~~~~~----~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~l~~s~ 516 (768)
||++- .+.+++.. ...+....+.++|+|+.|+.+.. ..+++|..++|+....++ .|...|.+++|++
T Consensus 305 wdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~g-s~l~~~~se~g~~~~~~e~~h~~~Is~is~~~ 383 (420)
T KOG2096|consen 305 WDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFG-SDLKVFASEDGKDYPELEDIHSTTISSISYSS 383 (420)
T ss_pred eeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecC-CceEEEEcccCccchhHHHhhcCceeeEEecC
Confidence 99742 22333331 22234458999999998887653 579999999998777664 5899999999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCHH
Q 004214 517 KTEMFATGGSDALVNLWHDSTAA 539 (768)
Q Consensus 517 ~~~~l~s~~~dg~v~vw~~~~~~ 539 (768)
+|++++++| |..+++..-.++.
T Consensus 384 ~g~~~atcG-dr~vrv~~ntpg~ 405 (420)
T KOG2096|consen 384 DGKYIATCG-DRYVRVIRNTPGW 405 (420)
T ss_pred CCcEEeeec-ceeeeeecCCCch
Confidence 999999998 6678888755443
No 129
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.93 E-value=2.7e-23 Score=205.78 Aligned_cols=176 Identities=19% Similarity=0.307 Sum_probs=138.9
Q ss_pred eCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCC-------ceEEEE
Q 004214 347 SSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQDRTACVWRLPDL-------VSVVTF 418 (768)
Q Consensus 347 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~-------~~~~~~ 418 (768)
+..|.|-||+++.....+...+. .......|+.+.|+| |...||+++.||.|++|.+..+ .+-..+
T Consensus 600 g~gG~iai~el~~PGrLPDgv~p------~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~l 673 (1012)
T KOG1445|consen 600 GSGGVIAIYELNEPGRLPDGVMP------GLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKIL 673 (1012)
T ss_pred CCCceEEEEEcCCCCCCCccccc------ccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceee
Confidence 44677888887754332221111 122456789999999 8889999999999999998643 456678
Q ss_pred eccCCCeEEEEEccC-CCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCe
Q 004214 419 RGHKRGIWSVEFSPV-DQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE 497 (768)
Q Consensus 419 ~~~~~~v~~v~~s~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~ 497 (768)
.+|...|+++.|+|- ...|++++.|-+|++||+.+++....+.+|.+.|..++|||+|+.+++.+.||+|++|+.++++
T Consensus 674 t~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e 753 (1012)
T KOG1445|consen 674 TIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSRE 753 (1012)
T ss_pred ecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCC
Confidence 899999999999995 5789999999999999999999999999999999999999999999999999999999998875
Q ss_pred -EEEEeccCC-CcEEEEEEcCCCCEEEEEeCCC
Q 004214 498 -CIATYDKHE-DKIWALAVGKKTEMFATGGSDA 528 (768)
Q Consensus 498 -~~~~~~~~~-~~v~~l~~s~~~~~l~s~~~dg 528 (768)
++..-.+.. ..-..+.|.-+|+++++.|-|.
T Consensus 754 ~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk 786 (1012)
T KOG1445|consen 754 QPVYEGKGPVGTRGARILWACDGRIVIVVGFDK 786 (1012)
T ss_pred CccccCCCCccCcceeEEEEecCcEEEEecccc
Confidence 344333222 1223466777999988887664
No 130
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=2.7e-24 Score=211.83 Aligned_cols=319 Identities=24% Similarity=0.335 Sum_probs=229.0
Q ss_pred EEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCE--EEEEeCCCeE
Q 004214 21 FCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGST--LISAGRDKVV 98 (768)
Q Consensus 21 ~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~--L~s~~~dg~i 98 (768)
.|-..++||++.|.||...|.|.+ ||+|+.||+|+||.+.+|+|+.++. ..+.|.|++|+|.+.. ||.+-... +
T Consensus 391 ~~~lvyrGHtg~Vr~iSvdp~G~w--lasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~-~ 466 (733)
T KOG0650|consen 391 RCALVYRGHTGLVRSISVDPSGEW--LASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGEC-V 466 (733)
T ss_pred eeeeeEeccCCeEEEEEecCCcce--eeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCc-e
Confidence 355678999999999999998887 9999999999999999999999887 4557999999997753 44433333 4
Q ss_pred EEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCC
Q 004214 99 NLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSS 178 (768)
Q Consensus 99 ~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~ 178 (768)
.+-+..-|..+...+..+ .|..+
T Consensus 467 ~ivnp~~G~~~e~~~t~e-----------------------------------ll~~~---------------------- 489 (733)
T KOG0650|consen 467 LIVNPIFGDRLEVGPTKE-----------------------------------LLASA---------------------- 489 (733)
T ss_pred EEeCccccchhhhcchhh-----------------------------------hhhcC----------------------
Confidence 443322111000000000 00000
Q ss_pred ceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEE
Q 004214 179 DVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVA 258 (768)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 258 (768)
|.. .
T Consensus 490 ---------------------~~~-------------------------------------------------------~ 493 (733)
T KOG0650|consen 490 ---------------------PNE-------------------------------------------------------S 493 (733)
T ss_pred ---------------------CCc-------------------------------------------------------c
Confidence 000 0
Q ss_pred eCCCcEEEEECCCce----eeeeeeCCccceEEEeeeeecCCCEEEEEEeCC---CeEEEEeCCCceEEEeeecccCcEE
Q 004214 259 TNIEQVQVYDLSSMS----CSYVLAGHSEIVLCLDTCALSSGKILIVTGSKD---NSVRLWDSESRCCVGVGTGHMGAVG 331 (768)
Q Consensus 259 ~~~~~i~i~d~~~~~----~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~ 331 (768)
..++.+..|.-.... -+...-.|...|..+. +...|.+ |++...+ ..|.|.++.......-|....+.|.
T Consensus 494 ~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vt--WHrkGDY-latV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq 570 (733)
T KOG0650|consen 494 EPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVT--WHRKGDY-LATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQ 570 (733)
T ss_pred CCcccceeechhhhhhhccceEEEEecCCccceee--eecCCce-EEEeccCCCcceEEEEecccccccCchhhcCCcee
Confidence 001223333322111 1223445777888887 7777776 6665443 4788899887776666767788899
Q ss_pred EEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004214 332 AVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPD 411 (768)
Q Consensus 332 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~ 411 (768)
++.|+|... +|++++. ..|++||+.. ......+......|.+++++|.|.-|+.|+.|+.+..||+.-
T Consensus 571 ~v~FHPs~p-~lfVaTq-~~vRiYdL~k----------qelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldl 638 (733)
T KOG0650|consen 571 RVKFHPSKP-YLFVATQ-RSVRIYDLSK----------QELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDL 638 (733)
T ss_pred EEEecCCCc-eEEEEec-cceEEEehhH----------HHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEccc
Confidence 999999865 5555554 5799999873 222333344556789999999999999999999999999974
Q ss_pred C-ceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCC------C---ceeEEeecCCCc----EEEEEEEeCCC
Q 004214 412 L-VSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISD------G---SCLKTFEGHTSS----VLRASFLTRGA 477 (768)
Q Consensus 412 ~-~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~------~---~~~~~~~~~~~~----v~~~~~s~~~~ 477 (768)
. ++..++.-|...+++++|++.-.++++|+.||++.||.-.- . -+++.+.+|... |..+.|+|...
T Consensus 639 sskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qp 718 (733)
T KOG0650|consen 639 SSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQP 718 (733)
T ss_pred CcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCc
Confidence 4 67778888999999999999999999999999999986321 1 256788898776 99999999999
Q ss_pred EEEEEeCCCcEEEE
Q 004214 478 QIVSCGADGLVKLW 491 (768)
Q Consensus 478 ~l~s~~~dg~i~iw 491 (768)
+|++++.||+|++|
T Consensus 719 WLfsAGAd~tirlf 732 (733)
T KOG0650|consen 719 WLFSAGADGTIRLF 732 (733)
T ss_pred eEEecCCCceEEee
Confidence 99999999999998
No 131
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.93 E-value=7.2e-23 Score=208.99 Aligned_cols=270 Identities=13% Similarity=0.158 Sum_probs=207.7
Q ss_pred CEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEE
Q 004214 253 QYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGA 332 (768)
Q Consensus 253 ~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 332 (768)
..+++++.++.+.+||+.+++....+..+.. +.++. +.+++..++++++.++.|++||..+++....+..+.. +..
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~--~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~ 77 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGIT--LSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PEL 77 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceE--ECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccE
Confidence 4678888999999999999988888876654 45565 6777777567788899999999999888776665544 467
Q ss_pred EEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCC-cEEEEeCCC
Q 004214 333 VAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDR-TACVWRLPD 411 (768)
Q Consensus 333 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-~i~i~d~~~ 411 (768)
++++|+++.++++++.++.+++||+.... ..... .+...+.+++|+|+|.+++++..++ .+.+||..+
T Consensus 78 ~~~~~~g~~l~~~~~~~~~l~~~d~~~~~----------~~~~~-~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~ 146 (300)
T TIGR03866 78 FALHPNGKILYIANEDDNLVTVIDIETRK----------VLAEI-PVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKT 146 (300)
T ss_pred EEECCCCCEEEEEcCCCCeEEEEECCCCe----------EEeEe-eCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCC
Confidence 89999987555666778999999997431 11111 1234468899999999999988775 467789988
Q ss_pred CceEEEEeccCCCeEEEEEccCCCEEEEe-eCCCcEEEEeCCCCceeEEeecCCC-------cEEEEEEEeCCCEEEEE-
Q 004214 412 LVSVVTFRGHKRGIWSVEFSPVDQVVITA-SGDKTIKIWSISDGSCLKTFEGHTS-------SVLRASFLTRGAQIVSC- 482 (768)
Q Consensus 412 ~~~~~~~~~~~~~v~~v~~s~~~~~l~t~-~~d~~i~iwd~~~~~~~~~~~~~~~-------~v~~~~~s~~~~~l~s~- 482 (768)
++....+.. ...+.+++|+|++++|+++ ..++.|++||+.+++++..+..+.. ....++|+|++++++++
T Consensus 147 ~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~ 225 (300)
T TIGR03866 147 YEIVDNVLV-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVAL 225 (300)
T ss_pred CeEEEEEEc-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEc
Confidence 877665442 3456789999999988654 4689999999999988777653211 23468899999986554
Q ss_pred eCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEE-eCCCcEEEEEcCCHH
Q 004214 483 GADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATG-GSDALVNLWHDSTAA 539 (768)
Q Consensus 483 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~-~~dg~v~vw~~~~~~ 539 (768)
+.++.+.+||+.+++.+..+. +...+++++|+|+|++|+++ +.+|.|.+||..+++
T Consensus 226 ~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~ 282 (300)
T TIGR03866 226 GPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALK 282 (300)
T ss_pred CCCCeEEEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCc
Confidence 456789999999998877664 55679999999999999886 468999999998754
No 132
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=3.4e-26 Score=230.13 Aligned_cols=252 Identities=25% Similarity=0.446 Sum_probs=223.8
Q ss_pred EeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEec
Q 004214 258 ATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSK 337 (768)
Q Consensus 258 ~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~ 337 (768)
......+++|+.+ .+..|...+.|+. ..... ..+++|+.|-.+.+|.......+..+.+|..+|.++.|++
T Consensus 10 ~~~~t~Lr~~~~~------~~~~hsaav~~lk--~~~s~-r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~ 80 (825)
T KOG0267|consen 10 TKRATKLRVWDTR------EFVAHSAAVGCLK--IRKSS-RSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDT 80 (825)
T ss_pred eeeeeccccccch------hhhhhhhhhceee--eeccc-eeeccCCCceeeccccccCCchhheeeccCCcceeeecCc
Confidence 3334556677765 3445777788875 33333 4599999999999999988877888999999999999999
Q ss_pred CCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEE
Q 004214 338 KLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVT 417 (768)
Q Consensus 338 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 417 (768)
. ..++++|+.+|+|++||+. ..+....+.+|...+.++.|+|-+.+.+.|+.|+.+++||.+...+...
T Consensus 81 ~-E~LlaagsasgtiK~wDle----------eAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~ 149 (825)
T KOG0267|consen 81 S-ERLLAAGSASGTIKVWDLE----------EAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHT 149 (825)
T ss_pred c-hhhhcccccCCceeeeehh----------hhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceee
Confidence 8 4589999999999999998 3345667889999999999999999999999999999999998889999
Q ss_pred EeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCe
Q 004214 418 FRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE 497 (768)
Q Consensus 418 ~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~ 497 (768)
+.+|...|.++.|+|+|++++.|+.|.+++|||+..|+.+..|.+|.+.+..+.|+|..-.+++|+.|++|++||+++.+
T Consensus 150 ~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe 229 (825)
T KOG0267|consen 150 YKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFE 229 (825)
T ss_pred ecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccCCCcEEEEEEcCCCCEEEEEeCCCc
Q 004214 498 CIATYDKHEDKIWALAVGKKTEMFATGGSDAL 529 (768)
Q Consensus 498 ~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~ 529 (768)
.+.........|.+++|+|++..+++|..+..
T Consensus 230 ~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~sl 261 (825)
T KOG0267|consen 230 VISSGKPETDGVRSLAFNPDGKIVLSGEQISL 261 (825)
T ss_pred EeeccCCccCCceeeeecCCceeeecCchhhh
Confidence 99999888899999999999999988876543
No 133
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=5.9e-25 Score=223.10 Aligned_cols=290 Identities=20% Similarity=0.252 Sum_probs=226.9
Q ss_pred eEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCC--
Q 004214 194 TAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSS-- 271 (768)
Q Consensus 194 ~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~-- 271 (768)
.++...++...+++++. ..+.+|.+........-....+......-.+.+++|..-..+++|+++..|.|.+||+..
T Consensus 43 nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~ 121 (839)
T KOG0269|consen 43 NAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNKSI 121 (839)
T ss_pred ceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCccc
Confidence 34445555555555443 345666655443221111111222223345667888888889999999999999999987
Q ss_pred -ceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCC
Q 004214 272 -MSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDH 350 (768)
Q Consensus 272 -~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg 350 (768)
...+..+..|...+.+++ +.+....+|++|+.||+|++||++...-..++.+....|..+.|+|...+.|+++...|
T Consensus 122 rnk~l~~f~EH~Rs~~~ld--fh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG 199 (839)
T KOG0269|consen 122 RNKLLTVFNEHERSANKLD--FHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSG 199 (839)
T ss_pred cchhhhHhhhhccceeeee--eccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCc
Confidence 566668899999999999 77778888999999999999999999888888899999999999998888999999999
Q ss_pred eEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCce--EEEEeccCCCeEEE
Q 004214 351 TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVS--VVTFRGHKRGIWSV 428 (768)
Q Consensus 351 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~v~~v 428 (768)
.+.+||++.. ......+.+|.++|.|+.|+|++.+||+|+.|++|+|||..+.+. ..++. ...+|.++
T Consensus 200 ~lqlWDlRqp---------~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tIn-Tiapv~rV 269 (839)
T KOG0269|consen 200 YLQLWDLRQP---------DRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTIN-TIAPVGRV 269 (839)
T ss_pred eEEEeeccCc---------hhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEe-ecceeeee
Confidence 9999999853 335566788999999999999999999999999999999986543 33333 45689999
Q ss_pred EEccCCC-EEEEee--CCCcEEEEeCCCC-ceeEEeecCCCcEEEEEEEe-CCCEEEEEeCCCcEEEEECCCC
Q 004214 429 EFSPVDQ-VVITAS--GDKTIKIWSISDG-SCLKTFEGHTSSVLRASFLT-RGAQIVSCGADGLVKLWTVRTG 496 (768)
Q Consensus 429 ~~s~~~~-~l~t~~--~d~~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~ 496 (768)
.|-|... .|++++ .|..|+|||++.. -+..++..|...++.++|.. |...|.+++.||+|..-.++++
T Consensus 270 kWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 270 KWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred eeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence 9999865 455554 4789999998754 57788999999999999965 5567899999998876655544
No 134
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.93 E-value=1.8e-24 Score=208.45 Aligned_cols=279 Identities=18% Similarity=0.282 Sum_probs=228.5
Q ss_pred CCceeEEEEecCCCCEEEEEeCCCcEEEEECCCce---eeeeeeC--CccceEEEeeeeecCCCEEEEEEeCCCeEEEEe
Q 004214 239 NEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMS---CSYVLAG--HSEIVLCLDTCALSSGKILIVTGSKDNSVRLWD 313 (768)
Q Consensus 239 ~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~---~~~~~~~--~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd 313 (768)
.++|.+..-.+...+++.+|+. |.|+|||+.... .+..+.. ....+.+.. .+++++. |++|+.-.++.|||
T Consensus 418 HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSck--L~pdgrt-LivGGeastlsiWD 493 (705)
T KOG0639|consen 418 HGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCK--LLPDGRT-LIVGGEASTLSIWD 493 (705)
T ss_pred cCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeE--ecCCCce-EEeccccceeeeee
Confidence 4455565555566778888877 999999986532 2222322 234455544 6677776 88899999999999
Q ss_pred CCCceEE--EeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccC
Q 004214 314 SESRCCV--GVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN 391 (768)
Q Consensus 314 ~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 391 (768)
+....+. ..+........+++.+||.+ +.++++.||.|.+||+. +......+.+|.+.+.||.++++
T Consensus 494 LAapTprikaeltssapaCyALa~spDak-vcFsccsdGnI~vwDLh----------nq~~VrqfqGhtDGascIdis~d 562 (705)
T KOG0639|consen 494 LAAPTPRIKAELTSSAPACYALAISPDAK-VCFSCCSDGNIAVWDLH----------NQTLVRQFQGHTDGASCIDISKD 562 (705)
T ss_pred ccCCCcchhhhcCCcchhhhhhhcCCccc-eeeeeccCCcEEEEEcc----------cceeeecccCCCCCceeEEecCC
Confidence 9865433 33333445677899999955 88899999999999998 44577788999999999999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEE
Q 004214 392 DSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRAS 471 (768)
Q Consensus 392 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~ 471 (768)
|..|.+|+-|.+|+-||+++++.+.... ....|.++.++|.+.+|++|-.++.+.|-... +.....+.-|...|.++.
T Consensus 563 GtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~s-kp~kyqlhlheScVLSlK 640 (705)
T KOG0639|consen 563 GTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTS-KPEKYQLHLHESCVLSLK 640 (705)
T ss_pred CceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecC-CccceeecccccEEEEEE
Confidence 9999999999999999999988776544 56789999999999999999999999998864 444556667999999999
Q ss_pred EEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 004214 472 FLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHD 535 (768)
Q Consensus 472 ~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~ 535 (768)
|++.|+++++.+.|..+..|...-|..+...+ ..+.|.++.+|.|.++++||+.|..-.||.+
T Consensus 641 Fa~cGkwfvStGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 641 FAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred ecccCceeeecCchhhhhhccCccccceeecc-ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 99999999999999999999999999888876 6788999999999999999999998888875
No 135
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.5e-23 Score=190.74 Aligned_cols=293 Identities=20% Similarity=0.303 Sum_probs=211.2
Q ss_pred EEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeee
Q 004214 33 VSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTV 112 (768)
Q Consensus 33 V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~ 112 (768)
-.|+.|++-|.+ ||+|+.||.|.|||+.|...-+.+.+|..+|++++||+||+.|+|++.|..|.+||+..|.+++.+
T Consensus 26 a~~~~Fs~~G~~--lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri 103 (405)
T KOG1273|consen 26 AECCQFSRWGDY--LAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI 103 (405)
T ss_pred cceEEeccCcce--eeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEE
Confidence 789999999988 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccc
Q 004214 113 PTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRG 192 (768)
Q Consensus 113 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (768)
....++....+.|...... +++.-
T Consensus 104 rf~spv~~~q~hp~k~n~~---------------------va~~~----------------------------------- 127 (405)
T KOG1273|consen 104 RFDSPVWGAQWHPRKRNKC---------------------VATIM----------------------------------- 127 (405)
T ss_pred EccCccceeeeccccCCeE---------------------EEEEe-----------------------------------
Confidence 8888887777777543110 00000
Q ss_pred eeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCc
Q 004214 193 FTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSM 272 (768)
Q Consensus 193 ~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~ 272 (768)
+ ....-+.|+++. ..++.-..++...
T Consensus 128 ------------------~----------------------------~sp~vi~~s~~~-h~~Lp~d~d~dln------- 153 (405)
T KOG1273|consen 128 ------------------E----------------------------ESPVVIDFSDPK-HSVLPKDDDGDLN------- 153 (405)
T ss_pred ------------------c----------------------------CCcEEEEecCCc-eeeccCCCccccc-------
Confidence 0 000011111100 0000001111100
Q ss_pred eeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeeccc-CcEEEEEEecCCCcEEEEEeCCCe
Q 004214 273 SCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHM-GAVGAVAFSKKLQNFLVSGSSDHT 351 (768)
Q Consensus 273 ~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~~~dg~ 351 (768)
....|. .+...++. +++|...|.+.++|..+.+++..++-.+ ..|..+.++..|. +|+.-+.|..
T Consensus 154 ----~sas~~--------~fdr~g~y-IitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~-~liiNtsDRv 219 (405)
T KOG1273|consen 154 ----SSASHG--------VFDRRGKY-IITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGR-FLIINTSDRV 219 (405)
T ss_pred ----cccccc--------cccCCCCE-EEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCc-EEEEecCCce
Confidence 001111 14455665 9999999999999999999998888666 7899999999866 8999999999
Q ss_pred EEEEeCCCCCCCCc-cccccceeeEeeccCCCeEEEEEccCCCEEEEEeC-CCcEEEEeCCCCceEEEEeccC-CCeEEE
Q 004214 352 IKVWSFDGLSDDAE-QPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ-DRTACVWRLPDLVSVVTFRGHK-RGIWSV 428 (768)
Q Consensus 352 i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~-~~v~~v 428 (768)
|+.|++........ ..........-......-.+++|+.+|.+++.|+. -..++||.-..|..++.+.|.. .....+
T Consensus 220 IR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV 299 (405)
T KOG1273|consen 220 IRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDV 299 (405)
T ss_pred EEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeec
Confidence 99999874322100 00000000000012234567899999999988874 3579999999999999999877 567889
Q ss_pred EEccCCCEEEEeeCCCcEEEEeCC
Q 004214 429 EFSPVDQVVITASGDKTIKIWSIS 452 (768)
Q Consensus 429 ~~s~~~~~l~t~~~d~~i~iwd~~ 452 (768)
.|+|-...+++- ..|.|+||...
T Consensus 300 ~whp~rp~i~si-~sg~v~iw~~~ 322 (405)
T KOG1273|consen 300 NWHPVRPIIASI-ASGVVYIWAVV 322 (405)
T ss_pred ccccceeeeeec-cCCceEEEEee
Confidence 999998888887 56999999864
No 136
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=2.4e-23 Score=215.73 Aligned_cols=276 Identities=16% Similarity=0.203 Sum_probs=228.5
Q ss_pred ccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCc-eeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCC
Q 004214 237 GYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSM-SCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSE 315 (768)
Q Consensus 237 ~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~ 315 (768)
.|....+.++|.+ ++.++++++.+|.|++|+.... .....+..+...|.+++ . ... .|++|+.+++|.+|.+.
T Consensus 11 aht~G~t~i~~d~-~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia--~--~s~-~f~~~s~~~tv~~y~fp 84 (933)
T KOG1274|consen 11 AHTGGLTLICYDP-DGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIA--C--YSN-HFLTGSEQNTVLRYKFP 84 (933)
T ss_pred hccCceEEEEEcC-CCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEe--e--ccc-ceEEeeccceEEEeeCC
Confidence 4566677888875 5569999999999999998766 44555555888888875 2 223 49999999999999999
Q ss_pred CceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEE
Q 004214 316 SRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLV 395 (768)
Q Consensus 316 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 395 (768)
++..-..+...+-++.+++++.+|. +++.|+.|-.|++.++... .....+.+|..+|.++.|+|++.+|
T Consensus 85 s~~~~~iL~Rftlp~r~~~v~g~g~-~iaagsdD~~vK~~~~~D~----------s~~~~lrgh~apVl~l~~~p~~~fL 153 (933)
T KOG1274|consen 85 SGEEDTILARFTLPIRDLAVSGSGK-MIAAGSDDTAVKLLNLDDS----------SQEKVLRGHDAPVLQLSYDPKGNFL 153 (933)
T ss_pred CCCccceeeeeeccceEEEEecCCc-EEEeecCceeEEEEecccc----------chheeecccCCceeeeeEcCCCCEE
Confidence 8887767777788999999999976 7999999999999998743 3566778999999999999999999
Q ss_pred EEEeCCCcEEEEeCCCCceEEEEecc--------CCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeec--CCC
Q 004214 396 CTGSQDRTACVWRLPDLVSVVTFRGH--------KRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEG--HTS 465 (768)
Q Consensus 396 ~~~~~dg~i~i~d~~~~~~~~~~~~~--------~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~--~~~ 465 (768)
|+.+.||.|++|++.++....++.+- ...+..++|+|+|..++..+.|+.|++|+..++.....+.. +..
T Consensus 154 Avss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss 233 (933)
T KOG1274|consen 154 AVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSS 233 (933)
T ss_pred EEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeeccccccc
Confidence 99999999999999998877666541 34677899999988888888999999999999998888763 344
Q ss_pred cEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEE
Q 004214 466 SVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 533 (768)
Q Consensus 466 ~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw 533 (768)
.+..++|+|+|+|||+++.||.|.|||+++-+. ......|.+++|.|+++.+-.....|...+|
T Consensus 234 ~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 234 KFSDLQWSPNGKYIAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred ceEEEEEcCCCcEEeeeccCCcEEEEecccchh----ccccceeEEEecCCCCCeeEEEeeccccccC
Confidence 589999999999999999999999999998322 2345789999999998877666666665555
No 137
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=9.1e-24 Score=208.11 Aligned_cols=316 Identities=19% Similarity=0.251 Sum_probs=235.4
Q ss_pred eEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcc
Q 004214 66 CVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKK 145 (768)
Q Consensus 66 ~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (768)
+-..+.||.+.|.+|...|.|.+|++|+.||+|+||.+.+|+|+.++...+.|.+++|.|.+...
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~--------------- 456 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLC--------------- 456 (733)
T ss_pred eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCce---------------
Confidence 34567899999999999999999999999999999999999999999888888888887765411
Q ss_pred cCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCccc
Q 004214 146 RRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEK 225 (768)
Q Consensus 146 ~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~ 225 (768)
T Consensus 457 -------------------------------------------------------------------------------- 456 (733)
T KOG0650|consen 457 -------------------------------------------------------------------------------- 456 (733)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEE--
Q 004214 226 KMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTG-- 303 (768)
Q Consensus 226 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~-- 303 (768)
.||++.. +.+.+.+..-|..+.. + +... +|+++
T Consensus 457 ----------------------------vLAvA~~-~~~~ivnp~~G~~~e~--~-------------~t~e-ll~~~~~ 491 (733)
T KOG0650|consen 457 ----------------------------VLAVAVG-ECVLIVNPIFGDRLEV--G-------------PTKE-LLASAPN 491 (733)
T ss_pred ----------------------------eEEEEec-CceEEeCccccchhhh--c-------------chhh-hhhcCCC
Confidence 1111111 1111212111100000 0 0000 01111
Q ss_pred --eCCCeEEEEeCCCce----EEEeeecccCcEEEEEEecCCCcEEEEEeC---CCeEEEEeCCCCCCCCccccccceee
Q 004214 304 --SKDNSVRLWDSESRC----CVGVGTGHMGAVGAVAFSKKLQNFLVSGSS---DHTIKVWSFDGLSDDAEQPMNLKAKA 374 (768)
Q Consensus 304 --~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~ 374 (768)
..++.+..|.-.... -+...-.|...|..+.|+..|. +|++... ...|.|.++.... ...
T Consensus 492 ~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGD-YlatV~~~~~~~~VliHQLSK~~----------sQ~ 560 (733)
T KOG0650|consen 492 ESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGD-YLATVMPDSGNKSVLIHQLSKRK----------SQS 560 (733)
T ss_pred ccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCc-eEEEeccCCCcceEEEEeccccc----------ccC
Confidence 234466677543211 1334456889999999999987 6777654 3568888887432 222
Q ss_pred EeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCC
Q 004214 375 VVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG 454 (768)
Q Consensus 375 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~ 454 (768)
.+....+.|.++.|+|...+|++++. ..|+|||+...+.+..+......|..++++|.|.-|+.|+.|+.+..||+.-+
T Consensus 561 PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldls 639 (733)
T KOG0650|consen 561 PFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLS 639 (733)
T ss_pred chhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccC
Confidence 23344577899999999999998876 67999999988888887777888999999999999999999999999999754
Q ss_pred -ceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECC------CC---eEEEEeccCCCc----EEEEEEcCCCCE
Q 004214 455 -SCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVR------TG---ECIATYDKHEDK----IWALAVGKKTEM 520 (768)
Q Consensus 455 -~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~------~~---~~~~~~~~~~~~----v~~l~~s~~~~~ 520 (768)
++.+++..|...+++++|++.-.++++|+.||++.||.-. .+ -++..+.+|... |....|+|...+
T Consensus 640 skPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpW 719 (733)
T KOG0650|consen 640 SKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPW 719 (733)
T ss_pred cchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCce
Confidence 6788899999999999999999999999999999998532 11 256677888765 889999999999
Q ss_pred EEEEeCCCcEEEE
Q 004214 521 FATGGSDALVNLW 533 (768)
Q Consensus 521 l~s~~~dg~v~vw 533 (768)
|+++|.||+|++|
T Consensus 720 LfsAGAd~tirlf 732 (733)
T KOG0650|consen 720 LFSAGADGTIRLF 732 (733)
T ss_pred EEecCCCceEEee
Confidence 9999999999998
No 138
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.5e-24 Score=220.15 Aligned_cols=231 Identities=21% Similarity=0.323 Sum_probs=194.1
Q ss_pred eecCCCEEEEEEeCCCeEEEEeCCC---ceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCcccc
Q 004214 292 ALSSGKILIVTGSKDNSVRLWDSES---RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPM 368 (768)
Q Consensus 292 ~~~~~~~~l~~~~~dg~i~iwd~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 368 (768)
+..-...+|++++..|.|.+||+.. .+.+..+..|...+.++.|++..+++|++|++||+|++||++..
T Consensus 95 W~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~-------- 166 (839)
T KOG0269|consen 95 WGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSK-------- 166 (839)
T ss_pred cccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecc--------
Confidence 4444556799999999999999987 66677889999999999999999999999999999999999843
Q ss_pred ccceeeEeeccCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCC-ceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcE
Q 004214 369 NLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQDRTACVWRLPDL-VSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTI 446 (768)
Q Consensus 369 ~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i 446 (768)
+...++.+....|+.+.|+| .+..++++...|.+.+||++.. ++...+..|.++|.|+.|+|++.+||||+.|+.|
T Consensus 167 --~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~v 244 (839)
T KOG0269|consen 167 --KSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMV 244 (839)
T ss_pred --cccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccE
Confidence 34445556778899999999 6889999999999999999865 5566788999999999999999999999999999
Q ss_pred EEEeCCCCc--eeEEeecCCCcEEEEEEEeCCCE-EEEEeC--CCcEEEEECCCC-eEEEEeccCCCcEEEEEEcC-CCC
Q 004214 447 KIWSISDGS--CLKTFEGHTSSVLRASFLTRGAQ-IVSCGA--DGLVKLWTVRTG-ECIATYDKHEDKIWALAVGK-KTE 519 (768)
Q Consensus 447 ~iwd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~-l~s~~~--dg~i~iwd~~~~-~~~~~~~~~~~~v~~l~~s~-~~~ 519 (768)
+|||..+++ .+.++. ...+|.+++|-|...+ |++++. |-.|+|||++.. -+-.++..|...++.++|.. |..
T Consensus 245 kiWd~t~~~~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~ 323 (839)
T KOG0269|consen 245 KIWDMTDSRAKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRI 323 (839)
T ss_pred EEEeccCCCccceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCce
Confidence 999997654 334443 4578999999998765 565554 678999999764 57788889999999999975 566
Q ss_pred EEEEEeCCCcEEEE
Q 004214 520 MFATGGSDALVNLW 533 (768)
Q Consensus 520 ~l~s~~~dg~v~vw 533 (768)
.+.+++.||.|..-
T Consensus 324 ~l~s~sKD~tv~qh 337 (839)
T KOG0269|consen 324 NLWSCSKDGTVLQH 337 (839)
T ss_pred eeEeecCccHHHHh
Confidence 78899999987543
No 139
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.92 E-value=4.5e-24 Score=205.64 Aligned_cols=282 Identities=21% Similarity=0.351 Sum_probs=224.8
Q ss_pred cCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCC---CeeEEEecC--ccceeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 004214 28 GHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLA---KKCVATLDK--HFSRVTSMAITSDGSTLISAGRDKVVNLWD 102 (768)
Q Consensus 28 gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~---~~~~~~l~~--h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd 102 (768)
.|...|.++++|...+. +.||+. |.|+|||+.. ..++..|.. ...-|.++.+.|||+.|++||.-.++.|||
T Consensus 417 ~HGEvVcAvtIS~~trh--VyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWD 493 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRH--VYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWD 493 (705)
T ss_pred ccCcEEEEEEecCCcce--eEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeee
Confidence 49999999999988777 999886 5599999953 344555543 345788999999999999999988999999
Q ss_pred CCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceee
Q 004214 103 LRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTI 182 (768)
Q Consensus 103 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~ 182 (768)
+..-.....
T Consensus 494 LAapTprik----------------------------------------------------------------------- 502 (705)
T KOG0639|consen 494 LAAPTPRIK----------------------------------------------------------------------- 502 (705)
T ss_pred ccCCCcchh-----------------------------------------------------------------------
Confidence 864221000
Q ss_pred cccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCC
Q 004214 183 SFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIE 262 (768)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~ 262 (768)
T Consensus 503 -------------------------------------------------------------------------------- 502 (705)
T KOG0639|consen 503 -------------------------------------------------------------------------------- 502 (705)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcE
Q 004214 263 QVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNF 342 (768)
Q Consensus 263 ~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 342 (768)
..+.......++++ .+++.+ +.+++..||.|.|||+.+...++.+.+|+..+.|+.++++|. .
T Consensus 503 -------------aeltssapaCyALa--~spDak-vcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGt-k 565 (705)
T KOG0639|consen 503 -------------AELTSSAPACYALA--ISPDAK-VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGT-K 565 (705)
T ss_pred -------------hhcCCcchhhhhhh--cCCccc-eeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCc-e
Confidence 00011111222332 445544 488888999999999999999999999999999999999987 5
Q ss_pred EEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccC
Q 004214 343 LVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHK 422 (768)
Q Consensus 343 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 422 (768)
|-+|+-|++|+.||++.+.... .....+.|.++..+|++.++++|-.++.+.+...... ....+.-|.
T Consensus 566 lWTGGlDntvRcWDlregrqlq-----------qhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp-~kyqlhlhe 633 (705)
T KOG0639|consen 566 LWTGGLDNTVRCWDLREGRQLQ-----------QHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKP-EKYQLHLHE 633 (705)
T ss_pred eecCCCccceeehhhhhhhhhh-----------hhhhhhhheecccCCCccceeeecccCcEEEEecCCc-cceeecccc
Confidence 9999999999999998653211 1223567999999999999999999999998876543 344566799
Q ss_pred CCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEEC
Q 004214 423 RGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTV 493 (768)
Q Consensus 423 ~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 493 (768)
..|.++.|.+.|+++++.+.|+.+..|...-|..+...+ ...+|+++.+|.|.+|+++|+.|..-.||.+
T Consensus 634 ScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 634 SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred cEEEEEEecccCceeeecCchhhhhhccCccccceeecc-ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 999999999999999999999999999999898887776 6788999999999999999999988888864
No 140
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.92 E-value=1.1e-23 Score=209.40 Aligned_cols=289 Identities=22% Similarity=0.299 Sum_probs=222.7
Q ss_pred CCCCEEEEEeCCCcEEEEECCCcee------eeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEe-
Q 004214 250 EEEQYLAVATNIEQVQVYDLSSMSC------SYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGV- 322 (768)
Q Consensus 250 ~~~~~l~~~~~~~~i~i~d~~~~~~------~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~- 322 (768)
.....|+++..+|.|.++|...... ......|.+.|..+. +.+ +..+|++++.|.++++||+.+..+...
T Consensus 62 n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~--wap-ge~~lVsasGDsT~r~Wdvk~s~l~G~~ 138 (720)
T KOG0321|consen 62 NKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLK--WAP-GESLLVSASGDSTIRPWDVKTSRLVGGR 138 (720)
T ss_pred CccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeec--cCC-CceeEEEccCCceeeeeeeccceeecce
Confidence 4567899999999999999876543 355678999999997 555 777799999999999999999998877
Q ss_pred -eecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCC-----------------ccccccceeeEeeccCCCeE
Q 004214 323 -GTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDA-----------------EQPMNLKAKAVVAAHGKDIN 384 (768)
Q Consensus 323 -~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~i~ 384 (768)
+.+|.+.|.++||.|..+..|++|+.||.|.|||++...... ......+......++...|.
T Consensus 139 ~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ 218 (720)
T KOG0321|consen 139 LNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIF 218 (720)
T ss_pred eecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCcee
Confidence 889999999999999999999999999999999987542100 00001112223345556666
Q ss_pred E---EEEccCCCEEEEEeC-CCcEEEEeCCCCceEEE--------Eecc---CCCeEEEEEccCCCEEEEeeCCCcEEEE
Q 004214 385 S---LAVAPNDSLVCTGSQ-DRTACVWRLPDLVSVVT--------FRGH---KRGIWSVEFSPVDQVVITASGDKTIKIW 449 (768)
Q Consensus 385 ~---~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~~~~--------~~~~---~~~v~~v~~s~~~~~l~t~~~d~~i~iw 449 (768)
+ +.+..|...||+++. |+.|+|||++....... +..| ...++++.....|.+|++.+.|++|+.|
T Consensus 219 ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~y 298 (720)
T KOG0321|consen 219 SSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFY 298 (720)
T ss_pred eeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEE
Confidence 5 666678888998887 99999999987543222 2223 3467888888889999999999999999
Q ss_pred eCCCC--ceeEEeecCCCc--EEEEEEEeCCCEEEEEeCCCcEEEEECCCCe-EEEEeccCCCcEEEEEEcCC-CCEEEE
Q 004214 450 SISDG--SCLKTFEGHTSS--VLRASFLTRGAQIVSCGADGLVKLWTVRTGE-CIATYDKHEDKIWALAVGKK-TEMFAT 523 (768)
Q Consensus 450 d~~~~--~~~~~~~~~~~~--v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~l~~s~~-~~~l~s 523 (768)
|+.+. .++..+.++... -..-..+|++.+|++|+.|+..++|.+.+.+ ....+.+|.-.|++++|.|. -.-++|
T Consensus 299 nm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~T 378 (720)
T KOG0321|consen 299 NMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVAT 378 (720)
T ss_pred eccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCcee
Confidence 98764 345555554332 2233568999999999999999999998865 45566789999999999884 335778
Q ss_pred EeCCCcEEEEEcCCHHHH
Q 004214 524 GGSDALVNLWHDSTAAER 541 (768)
Q Consensus 524 ~~~dg~v~vw~~~~~~~~ 541 (768)
++.|..+++|++..+-..
T Consensus 379 cSdD~~~kiW~l~~~l~e 396 (720)
T KOG0321|consen 379 CSDDFRVKIWRLSNGLEE 396 (720)
T ss_pred eccCcceEEEeccCchhh
Confidence 899999999999765443
No 141
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=4.3e-24 Score=187.41 Aligned_cols=251 Identities=23% Similarity=0.332 Sum_probs=196.7
Q ss_pred EEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCC---eeEEEecCccceeEEEEEcC--CCCEEEEEeCCCeEEE
Q 004214 26 FKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK---KCVATLDKHFSRVTSMAITS--DGSTLISAGRDKVVNL 100 (768)
Q Consensus 26 l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~---~~~~~l~~h~~~V~~l~fs~--d~~~L~s~~~dg~i~v 100 (768)
-.+|...|......--|++ |||++.|++|+|+.+.+. +++.+|.||.++|+.++|.. -|..||+++.||.|.|
T Consensus 7 dt~H~D~IHda~lDyygkr--lATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIi 84 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKR--LATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVII 84 (299)
T ss_pred hhhhhhhhhHhhhhhhcce--eeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEE
Confidence 3569999998888877888 999999999999999754 56889999999999999975 7999999999999999
Q ss_pred EECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCce
Q 004214 101 WDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDV 180 (768)
Q Consensus 101 Wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~ 180 (768)
|.-++++-
T Consensus 85 Wke~~g~w------------------------------------------------------------------------ 92 (299)
T KOG1332|consen 85 WKEENGRW------------------------------------------------------------------------ 92 (299)
T ss_pred EecCCCch------------------------------------------------------------------------
Confidence 98765420
Q ss_pred eecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeC
Q 004214 181 TISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATN 260 (768)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~ 260 (768)
T Consensus 93 -------------------------------------------------------------------------------- 92 (299)
T KOG1332|consen 93 -------------------------------------------------------------------------------- 92 (299)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCc---eEEEeeecccCcEEEEEEec
Q 004214 261 IEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR---CCVGVGTGHMGAVGAVAFSK 337 (768)
Q Consensus 261 ~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~ 337 (768)
........|...|+++++.+.. .+.+|++++.||.|.+.+.++. ........|.-.|++++|.|
T Consensus 93 ------------~k~~e~~~h~~SVNsV~waphe-ygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswap 159 (299)
T KOG1332|consen 93 ------------TKAYEHAAHSASVNSVAWAPHE-YGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAP 159 (299)
T ss_pred ------------hhhhhhhhhcccceeecccccc-cceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecC
Confidence 0011233455666666533322 3445899999999999987654 23345568999999999998
Q ss_pred C---C----------CcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCC----CEEEEEeC
Q 004214 338 K---L----------QNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND----SLVCTGSQ 400 (768)
Q Consensus 338 ~---~----------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~----~~l~~~~~ 400 (768)
. | ...|++|+.|..|++|+.... .......+.+|.+-|+.++|.|.- ..||+++.
T Consensus 160 a~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~--------~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~Sq 231 (299)
T KOG1332|consen 160 ASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSD--------SWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQ 231 (299)
T ss_pred cCCCccccccCcccccceeeccCCccceeeeecCCc--------chhhhhhhhhcchhhhhhhhccccCCCceeeEEecC
Confidence 6 3 135999999999999998864 334455578999999999999953 57999999
Q ss_pred CCcEEEEeCCCCc---eEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeC
Q 004214 401 DRTACVWRLPDLV---SVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSI 451 (768)
Q Consensus 401 dg~i~i~d~~~~~---~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~ 451 (768)
||++.||..+... ....+......++.+.||+.|++|++++.|+.|.+|--
T Consensus 232 Dg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke 285 (299)
T KOG1332|consen 232 DGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKE 285 (299)
T ss_pred CCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEe
Confidence 9999999876321 12234446678999999999999999999999999974
No 142
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=5.3e-23 Score=186.79 Aligned_cols=253 Identities=19% Similarity=0.394 Sum_probs=200.0
Q ss_pred eCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCC----ceEEEeeecccCcEEEEEEe-cCCCcEEEEEeCCCeEE
Q 004214 279 AGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES----RCCVGVGTGHMGAVGAVAFS-KKLQNFLVSGSSDHTIK 353 (768)
Q Consensus 279 ~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~v~~~~~~-~~~~~~l~s~~~dg~i~ 353 (768)
.+|.+-|.|+. +...|+. +++++.|++|.|||..+ ..+....+.|.+.|..+.|. |.-...+++++.|+++.
T Consensus 10 s~h~DlihdVs--~D~~GRR-mAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~ 86 (361)
T KOG2445|consen 10 SGHKDLIHDVS--FDFYGRR-MATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVS 86 (361)
T ss_pred cCCcceeeeee--ecccCce-eeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCcee
Confidence 56888899998 7777777 99999999999999643 35667788999999999995 55556899999999999
Q ss_pred EEeCCCCCCCCccccccceeeEeeccCCCeEEEEEcc--CCCEEEEEeCCCcEEEEeCCCCc------eEEEEe------
Q 004214 354 VWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP--NDSLVCTGSQDRTACVWRLPDLV------SVVTFR------ 419 (768)
Q Consensus 354 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~--~~~~l~~~~~dg~i~i~d~~~~~------~~~~~~------ 419 (768)
+|.-..... ...........++......|+.+.|.| -|-.+|+++.||.++||+..+.. ....+.
T Consensus 87 iWEE~~~~~-~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp 165 (361)
T KOG2445|consen 87 IWEEQEKSE-EAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPP 165 (361)
T ss_pred eeeeccccc-ccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCc
Confidence 997542111 111124445666677788999999999 57899999999999999876432 222222
Q ss_pred -ccCCCeEEEEEccC---CCEEEEeeCC-----CcEEEEeCCCC----ceeEEeecCCCcEEEEEEEeCC----CEEEEE
Q 004214 420 -GHKRGIWSVEFSPV---DQVVITASGD-----KTIKIWSISDG----SCLKTFEGHTSSVLRASFLTRG----AQIVSC 482 (768)
Q Consensus 420 -~~~~~v~~v~~s~~---~~~l~t~~~d-----~~i~iwd~~~~----~~~~~~~~~~~~v~~~~~s~~~----~~l~s~ 482 (768)
.+..+..|+.|+|. ..+||+|+.+ +.++||....+ ..+.++.+|..+|++++|.|+- ..|+++
T Consensus 166 ~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA 245 (361)
T KOG2445|consen 166 GKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVA 245 (361)
T ss_pred ccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEe
Confidence 35677889999985 4688888776 47999986543 3556778999999999999962 478999
Q ss_pred eCCCcEEEEECCC--------------------CeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 004214 483 GADGLVKLWTVRT--------------------GECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDS 536 (768)
Q Consensus 483 ~~dg~i~iwd~~~--------------------~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~ 536 (768)
+.|| |+||.+.. -+.+..+..|.+.||.+.|.-.|..|++.|.||+|++|..+
T Consensus 246 ~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 246 TKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred ecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 9999 99999873 13456678999999999999999999999999999999754
No 143
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=3.5e-23 Score=214.52 Aligned_cols=243 Identities=20% Similarity=0.306 Sum_probs=206.7
Q ss_pred eCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCc-eEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeC
Q 004214 279 AGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR-CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSF 357 (768)
Q Consensus 279 ~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~ 357 (768)
..|+...+.++ +.+++.. |++++.||.|++|+..+. .....+..+...|.+++.... .|++|+.+++|..|.+
T Consensus 10 yaht~G~t~i~--~d~~gef-i~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~---~f~~~s~~~tv~~y~f 83 (933)
T KOG1274|consen 10 YAHTGGLTLIC--YDPDGEF-ICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSN---HFLTGSEQNTVLRYKF 83 (933)
T ss_pred hhccCceEEEE--EcCCCCE-EEEecCCCceEEeecCCcccCCchhhccCceeEEEeeccc---ceEEeeccceEEEeeC
Confidence 45777777775 7777875 999999999999987665 333333347777888877654 7999999999999999
Q ss_pred CCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEE
Q 004214 358 DGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVV 437 (768)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l 437 (768)
..+. ....+....-++++++|+.+|+++|.|+.|-.|++.++.+......+++|..+|.++.|+|.+++|
T Consensus 84 ps~~----------~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fL 153 (933)
T KOG1274|consen 84 PSGE----------EDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFL 153 (933)
T ss_pred CCCC----------ccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEE
Confidence 8653 222334456789999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeCCCcEEEEeCCCCceeEEeecC--------CCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEecc--CCC
Q 004214 438 ITASGDKTIKIWSISDGSCLKTFEGH--------TSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDK--HED 507 (768)
Q Consensus 438 ~t~~~d~~i~iwd~~~~~~~~~~~~~--------~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~ 507 (768)
|+.+.||.|+|||+.++.+..++.+- ...+..++|+|+|..|+..+.|+.|++|+..+++....+.. +..
T Consensus 154 Avss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss 233 (933)
T KOG1274|consen 154 AVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSS 233 (933)
T ss_pred EEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeeccccccc
Confidence 99999999999999999887776531 34678899999988999999999999999999998887753 455
Q ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 004214 508 KIWALAVGKKTEMFATGGSDALVNLWHDST 537 (768)
Q Consensus 508 ~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~ 537 (768)
.+..+.|+|+|.|||+++.||.|.|||..+
T Consensus 234 ~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 234 KFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred ceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 589999999999999999999999999987
No 144
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.92 E-value=6.6e-23 Score=196.05 Aligned_cols=306 Identities=17% Similarity=0.255 Sum_probs=224.3
Q ss_pred EECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCC----eeEEEecCccceeEEEEEcCC-CCEE
Q 004214 15 WDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK----KCVATLDKHFSRVTSMAITSD-GSTL 89 (768)
Q Consensus 15 wd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~----~~~~~l~~h~~~V~~l~fs~d-~~~L 89 (768)
.|+.+-......+-|.++|++++|+|.....++|+|..-|.|-+||+.+. ..+..+..|.++|.+|.|+|. -..+
T Consensus 171 l~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i 250 (498)
T KOG4328|consen 171 LDLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQI 250 (498)
T ss_pred cccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhhe
Confidence 34444455566778999999999999988789999999999999999532 346778899999999999994 4678
Q ss_pred EEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCC
Q 004214 90 ISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADS 169 (768)
Q Consensus 90 ~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~ 169 (768)
++.+.||+|+.=|++.+.....+.
T Consensus 251 ~ssSyDGtiR~~D~~~~i~e~v~s-------------------------------------------------------- 274 (498)
T KOG4328|consen 251 YSSSYDGTIRLQDFEGNISEEVLS-------------------------------------------------------- 274 (498)
T ss_pred eeeccCceeeeeeecchhhHHHhh--------------------------------------------------------
Confidence 899999999998886542100000
Q ss_pred ceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEec
Q 004214 170 ACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLG 249 (768)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 249 (768)
.
T Consensus 275 -------------------------------------------------------------------------------~ 275 (498)
T KOG4328|consen 275 -------------------------------------------------------------------------------L 275 (498)
T ss_pred -------------------------------------------------------------------------------c
Confidence 0
Q ss_pred CCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceE-EEeeecccC
Q 004214 250 EEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC-VGVGTGHMG 328 (768)
Q Consensus 250 ~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~ 328 (768)
.+. ...+..++ +...... ++.|..=|...+||.+++.. ...+..|..
T Consensus 276 ~~d-----------------------------~~~fs~~d--~~~e~~~-vl~~~~~G~f~~iD~R~~~s~~~~~~lh~k 323 (498)
T KOG4328|consen 276 DTD-----------------------------NIWFSSLD--FSAESRS-VLFGDNVGNFNVIDLRTDGSEYENLRLHKK 323 (498)
T ss_pred Ccc-----------------------------ceeeeecc--ccCCCcc-EEEeecccceEEEEeecCCccchhhhhhhc
Confidence 000 00011111 3334444 55566666888898886543 556677888
Q ss_pred cEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEe
Q 004214 329 AVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWR 408 (768)
Q Consensus 329 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d 408 (768)
.|.+++++|..+.++++++.|++.+|||++....... +......|...|.+..|||.+-.|++.+.|..|+|||
T Consensus 324 KI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s------p~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~d 397 (498)
T KOG4328|consen 324 KITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKAS------PFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFD 397 (498)
T ss_pred ccceeecCCCCchheeecccCcceeeeehhhhcCCCC------cceecccccceeeeeEEcCCCCceEeeccCCceEEee
Confidence 9999999999999999999999999999997643221 2445567999999999999887799999999999999
Q ss_pred CC----CCceEEEEeccCC------CeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCC-cEEE-EEEEeCC
Q 004214 409 LP----DLVSVVTFRGHKR------GIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTS-SVLR-ASFLTRG 476 (768)
Q Consensus 409 ~~----~~~~~~~~~~~~~------~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~-~~~s~~~ 476 (768)
.. ...+...+. |.. ...-..|.|+..++++|-.-..|-|+|-..++.+..+..... .|.+ ..|+|-+
T Consensus 398 ss~~sa~~~p~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~ 476 (498)
T KOG4328|consen 398 SSCISAKDEPLGTIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMR 476 (498)
T ss_pred cccccccCCccceee-ccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccc
Confidence 83 334444444 322 233467999999999999999999999988888888754433 4444 4789988
Q ss_pred CEEEEE-eCCCcEEEEECC
Q 004214 477 AQIVSC-GADGLVKLWTVR 494 (768)
Q Consensus 477 ~~l~s~-~~dg~i~iwd~~ 494 (768)
..+++| +..|.|+||.-+
T Consensus 477 ~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 477 DTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred cceeccCCccceEEEEecC
Confidence 855555 457889988644
No 145
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.1e-22 Score=194.66 Aligned_cols=285 Identities=12% Similarity=0.130 Sum_probs=231.1
Q ss_pred ccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCc--eeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeC
Q 004214 237 GYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSM--SCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDS 314 (768)
Q Consensus 237 ~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~--~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~ 314 (768)
...+.|+++.|+| ..+.+++|+.|+.+++|.+... ..+..+.-...+|.+.. +.+.|...+++++....++.||+
T Consensus 211 ps~~~I~sv~FHp-~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~--f~p~G~~~i~~s~rrky~ysyDl 287 (514)
T KOG2055|consen 211 PSHGGITSVQFHP-TAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAE--FAPNGHSVIFTSGRRKYLYSYDL 287 (514)
T ss_pred cCcCCceEEEecC-CCceEEEecCCCcEEEEEecCccChhheeeeeccCccceee--ecCCCceEEEecccceEEEEeec
Confidence 3467899999985 7889999999999999987643 45556666677888876 88888866999999999999999
Q ss_pred CCceEEEe--eeccc-CcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccC
Q 004214 315 ESRCCVGV--GTGHM-GAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN 391 (768)
Q Consensus 315 ~~~~~~~~--~~~~~-~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 391 (768)
.+.+.... ..++. ..+....++|+++ +++..+..|.|.+....++. ........+.|..++|+.+
T Consensus 288 e~ak~~k~~~~~g~e~~~~e~FeVShd~~-fia~~G~~G~I~lLhakT~e-----------li~s~KieG~v~~~~fsSd 355 (514)
T KOG2055|consen 288 ETAKVTKLKPPYGVEEKSMERFEVSHDSN-FIAIAGNNGHIHLLHAKTKE-----------LITSFKIEGVVSDFTFSSD 355 (514)
T ss_pred cccccccccCCCCcccchhheeEecCCCC-eEEEcccCceEEeehhhhhh-----------hhheeeeccEEeeEEEecC
Confidence 98765443 23333 3567788899966 89999999999998766432 1111224567899999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCCceEEEEeccCC-CeEEEEEccCCCEEEEeeCCCcEEEEeCCC------CceeEEeecCC
Q 004214 392 DSLVCTGSQDRTACVWRLPDLVSVVTFRGHKR-GIWSVEFSPVDQVVITASGDKTIKIWSISD------GSCLKTFEGHT 464 (768)
Q Consensus 392 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~------~~~~~~~~~~~ 464 (768)
++.|++.+.+|.|.+||++...++..+....+ .-++++.++++.+||+|+..|.|.|||..+ .+++.++..-.
T Consensus 356 sk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLt 435 (514)
T KOG2055|consen 356 SKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLT 435 (514)
T ss_pred CcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhh
Confidence 99999999999999999999988888774332 347888899999999999999999999653 46788888888
Q ss_pred CcEEEEEEEeCCCEEEEEeC--CCcEEEEECCCCeEEEEeccC---CCcEEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 004214 465 SSVLRASFLTRGAQIVSCGA--DGLVKLWTVRTGECIATYDKH---EDKIWALAVGKKTEMFATGGSDALVNLWHDS 536 (768)
Q Consensus 465 ~~v~~~~~s~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~---~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~ 536 (768)
..|++++|+++++.|+.++. ...+++-.+.+......+... -+.|+||+|||.+.+||.|..+|.+.+|++.
T Consensus 436 t~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 436 TAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred eeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 89999999999999987776 568999988887776666543 3568999999999999999999999999874
No 146
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=4.4e-25 Score=222.19 Aligned_cols=223 Identities=29% Similarity=0.517 Sum_probs=200.4
Q ss_pred EEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeecc
Q 004214 300 IVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAH 379 (768)
Q Consensus 300 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 379 (768)
++.+..+-.+++||.+. +..|...+.++..-.. ...+++|+.|..+-+|.+... .....+.+|
T Consensus 7 ~m~~~~~t~Lr~~~~~~------~~~hsaav~~lk~~~s-~r~~~~Gg~~~k~~L~~i~kp----------~~i~S~~~h 69 (825)
T KOG0267|consen 7 LMKTKRATKLRVWDTRE------FVAHSAAVGCLKIRKS-SRSLVTGGEDEKVNLWAIGKP----------NAITSLTGH 69 (825)
T ss_pred cceeeeeeccccccchh------hhhhhhhhceeeeecc-ceeeccCCCceeeccccccCC----------chhheeecc
Confidence 44455556677887654 3568888888887444 458999999999999998743 233347899
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEE
Q 004214 380 GKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKT 459 (768)
Q Consensus 380 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~ 459 (768)
..+|.++.|++...+|++|+.+|+|++||+...+.++++.+|...+.++.|+|.+.+.+.|+.|+.+++||++...|.+.
T Consensus 70 espIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~ 149 (825)
T KOG0267|consen 70 ESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHT 149 (825)
T ss_pred CCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCHH
Q 004214 460 FEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAA 539 (768)
Q Consensus 460 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~~ 539 (768)
+.+|...|..+.|+|+|+++++|++|..++|||...|+.+..|..|.+.+.++.|+|..-.+++||.|+++++|++++-+
T Consensus 150 ~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe 229 (825)
T KOG0267|consen 150 YKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFE 229 (825)
T ss_pred ecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998643
No 147
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.7e-22 Score=183.87 Aligned_cols=285 Identities=17% Similarity=0.224 Sum_probs=222.3
Q ss_pred eeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEE
Q 004214 242 ILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVG 321 (768)
Q Consensus 242 i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 321 (768)
..++.|+ +.+.+||+|..+|.|.|||+.+...-+.+.+|..+|.+++ ++++|+. |++++.|..|.+||+..|.++.
T Consensus 26 a~~~~Fs-~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~--WS~dgr~-LltsS~D~si~lwDl~~gs~l~ 101 (405)
T KOG1273|consen 26 AECCQFS-RWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLC--WSRDGRK-LLTSSRDWSIKLWDLLKGSPLK 101 (405)
T ss_pred cceEEec-cCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEE--ecCCCCE-eeeecCCceeEEEeccCCCcee
Confidence 5677777 5889999999999999999999999999999999999997 7777776 9999999999999999999888
Q ss_pred eeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCC
Q 004214 322 VGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQD 401 (768)
Q Consensus 322 ~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d 401 (768)
.+. ..++|+.+.|+|...+..++.--+..-.+-++....... .+.......+....+..|.+.|+++++|...
T Consensus 102 rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~------Lp~d~d~dln~sas~~~fdr~g~yIitGtsK 174 (405)
T KOG1273|consen 102 RIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSV------LPKDDDGDLNSSASHGVFDRRGKYIITGTSK 174 (405)
T ss_pred EEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceee------ccCCCccccccccccccccCCCCEEEEecCc
Confidence 776 568999999999877666655444444455544211000 0000000011112234688999999999999
Q ss_pred CcEEEEeCCCCceEEEEeccC-CCeEEEEEccCCCEEEEeeCCCcEEEEeCCCC-------c--eeEEeec--CCCcEEE
Q 004214 402 RTACVWRLPDLVSVVTFRGHK-RGIWSVEFSPVDQVVITASGDKTIKIWSISDG-------S--CLKTFEG--HTSSVLR 469 (768)
Q Consensus 402 g~i~i~d~~~~~~~~~~~~~~-~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~-------~--~~~~~~~--~~~~v~~ 469 (768)
|.+.++|..+.+++..++-.. ..|..+.|+..|++|+.-+.|+.||.|+++.- + +.+++.. ....=.+
T Consensus 175 Gkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ 254 (405)
T KOG1273|consen 175 GKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKK 254 (405)
T ss_pred ceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhh
Confidence 999999999999999888766 78999999999999999999999999998631 1 1122211 1223356
Q ss_pred EEEEeCCCEEEEEeC-CCcEEEEECCCCeEEEEeccCC-CcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCH
Q 004214 470 ASFLTRGAQIVSCGA-DGLVKLWTVRTGECIATYDKHE-DKIWALAVGKKTEMFATGGSDALVNLWHDSTA 538 (768)
Q Consensus 470 ~~~s~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~-~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~ 538 (768)
++|+.+|.|++.++. -..++||.-..|.+++.+.+.. .....+.|+|-...+++. ..|.+++|.....
T Consensus 255 ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~~ 324 (405)
T KOG1273|consen 255 CCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQV 324 (405)
T ss_pred eeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEeecc
Confidence 899999999988775 3479999999999999998877 457789999999888887 7889999987654
No 148
>PF08625 Utp13: Utp13 specific WD40 associated domain; InterPro: IPR013934 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. Utp13 is a nucleolar protein and component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA []. Upt13 is also a component of the Pwp2 complex that forms part of a stable particle subunit independent of the U3 small nucleolar ribonucleoprotein that is essential for the initial assembly steps of the 90S pre-ribosome []. Components of the Pwp2 complex are: Utp1 (Pwp2), Utp6, Utp12 (Dip2), Utp13, Utp18, and Utp21. The relationship between the Pwp2 complex and the t-Utps complex [] that also associates with the 5' end of nascent pre-18S rRNA is unclear. ; GO: 0006364 rRNA processing, 0032040 small-subunit processome
Probab=99.91 E-value=2.9e-24 Score=181.41 Aligned_cols=136 Identities=38% Similarity=0.803 Sum_probs=127.9
Q ss_pred hhHHHHhhcccchHHHHHHHhhcCCchhHHHHHHHHH---hchhh--HHHHHHHHhhcCHHHHHHHHHHHHHHhcCCCch
Q 004214 555 GQELENAVLDADYTKAIQVAFELRRPHKLFELFASVC---RKREA--ELQIEKALHALGKEEIRQLLEYVREWNTKPKLC 629 (768)
Q Consensus 555 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---~~~~~--~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~~ 629 (768)
+|++.+++..++|.+|+.+|+++++|.+++.++..++ .+... ...++.++..|+.+++..||+|+++||||+|++
T Consensus 1 eQ~L~N~l~~~~y~~Al~LAl~L~~P~~ll~i~~~~~~~~~~~~~~g~~~l~~~i~~L~~~~l~~LL~~ir~WNTNsr~~ 80 (141)
T PF08625_consen 1 EQELSNLLRQKDYKEALRLALKLDHPFRLLKILKDLLETEEDEDSIGSEELDEVIKKLDDEQLEKLLRFIRDWNTNSRTS 80 (141)
T ss_pred CchHHHHHHhhhHHHHHHHHHhcCCcHHHHHHHHHHHhcccccccchHHHHHHHHHhcCHHHHHHHHHHHHHhhcccccH
Confidence 3688999999999999999999999999999999998 32222 467999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCcchhhcccChHhHHHhhccchHhHHHHHHHhHhhhhhhheeccccc
Q 004214 630 HVAQFVLFQLFNIHPPTEIIEIKGISDVLEGLIPYTQRHFSRIDRLVRSTFLLDYTLTGMS 690 (768)
Q Consensus 630 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~ 690 (768)
.++|.+|++||+.|+++.+...|++.+++++|.+|++||++|+++|.+.+++|||++.+|+
T Consensus 81 ~vAQ~vL~~il~~~~~~~L~~~~~~~~~le~lipYteRH~~Rl~~L~q~syllDy~l~~M~ 141 (141)
T PF08625_consen 81 HVAQRVLNAILKSHPPEELLKIPGLKEILEALIPYTERHFQRLDRLLQKSYLLDYTLQQMD 141 (141)
T ss_pred HHHHHHHHHHHHhCCHHHHHccccHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999985
No 149
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.91 E-value=1.1e-22 Score=194.63 Aligned_cols=291 Identities=21% Similarity=0.267 Sum_probs=226.2
Q ss_pred eeecccCCceeEEEEecCCC-CEEEEEeCCCcEEEEECCCc----eeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCC
Q 004214 233 KRLVGYNEEILDLKFLGEEE-QYLAVATNIEQVQVYDLSSM----SCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDN 307 (768)
Q Consensus 233 ~~~~~~~~~i~~~~~~~~~~-~~l~~~~~~~~i~i~d~~~~----~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg 307 (768)
....-+...|.+++|+|... +++|+|...|+|-+||+.+. .-+..+..|..+|.++. |+|.+...+++.+.||
T Consensus 180 ~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~--F~P~n~s~i~ssSyDG 257 (498)
T KOG4328|consen 180 NVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLK--FSPANTSQIYSSSYDG 257 (498)
T ss_pred ceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceE--ecCCChhheeeeccCc
Confidence 34456778999999999777 89999999999999999532 23556788999999998 7787777799999999
Q ss_pred eEEEEeCCCceEEEeeec--ccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEE
Q 004214 308 SVRLWDSESRCCVGVGTG--HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINS 385 (768)
Q Consensus 308 ~i~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 385 (768)
+|++-|++.+..-..+.. ....+..+.|+.+... ++.+..=|...+||.+.... ......-|...|++
T Consensus 258 tiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~-vl~~~~~G~f~~iD~R~~~s---------~~~~~~lh~kKI~s 327 (498)
T KOG4328|consen 258 TIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRS-VLFGDNVGNFNVIDLRTDGS---------EYENLRLHKKKITS 327 (498)
T ss_pred eeeeeeecchhhHHHhhcCccceeeeeccccCCCcc-EEEeecccceEEEEeecCCc---------cchhhhhhhcccce
Confidence 999999987654443333 4455677888877664 56666666999999986532 23334557789999
Q ss_pred EEEcc-CCCEEEEEeCCCcEEEEeCCCCc----eEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCC----CCce
Q 004214 386 LAVAP-NDSLVCTGSQDRTACVWRLPDLV----SVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSIS----DGSC 456 (768)
Q Consensus 386 ~~~s~-~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~----~~~~ 456 (768)
++++| ...+|++++.|++++|||++... ++.....|...|.+..|||.+-.|+|.+.|..|+|||.. ...+
T Consensus 328 v~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p 407 (498)
T KOG4328|consen 328 VALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEP 407 (498)
T ss_pred eecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCc
Confidence 99999 56789999999999999997642 234455699999999999998889999999999999983 3344
Q ss_pred eEEeecCCC------cEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCC-cEEEE-EEcCCCCEEEEE-eCC
Q 004214 457 LKTFEGHTS------SVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHED-KIWAL-AVGKKTEMFATG-GSD 527 (768)
Q Consensus 457 ~~~~~~~~~------~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~l-~~s~~~~~l~s~-~~d 527 (768)
..++. |.. ......|.|+..++++|-.-..|-|+|-..++.+..+..... .|.++ .|+|-+..+++| +..
T Consensus 408 ~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~ 486 (498)
T KOG4328|consen 408 LGTIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSS 486 (498)
T ss_pred cceee-ccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCcc
Confidence 44444 332 344578999999999999988999999999998888754444 56665 899988855554 567
Q ss_pred CcEEEEEcC
Q 004214 528 ALVNLWHDS 536 (768)
Q Consensus 528 g~v~vw~~~ 536 (768)
|.|+||--+
T Consensus 487 Gki~vft~k 495 (498)
T KOG4328|consen 487 GKIYVFTNK 495 (498)
T ss_pred ceEEEEecC
Confidence 889988644
No 150
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.91 E-value=1.8e-19 Score=194.67 Aligned_cols=372 Identities=32% Similarity=0.584 Sum_probs=289.9
Q ss_pred EEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCe-eEEEecCccc-eeEEEEE-cCCCC-EEEEEeC-CCeEE
Q 004214 25 YFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK-CVATLDKHFS-RVTSMAI-TSDGS-TLISAGR-DKVVN 99 (768)
Q Consensus 25 ~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~-~~~~l~~h~~-~V~~l~f-s~d~~-~L~s~~~-dg~i~ 99 (768)
.+.+|...|.++.|.+.+.. ++.++.|+.+.+|+...+. .+..+.++.. .+..+.+ ++++. +++..+. |+.+.
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 137 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGEL--LLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVK 137 (466)
T ss_pred eeeeccceEEEEEECCCCcE--EEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEE
Confidence 46689999999999998877 8888899999999998887 7777776443 6777777 78887 5555444 88888
Q ss_pred EEECCC-CeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCC
Q 004214 100 LWDLRD-YSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSS 178 (768)
Q Consensus 100 vWd~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~ 178 (768)
+|+... ....
T Consensus 138 ~~~~~~~~~~~--------------------------------------------------------------------- 148 (466)
T COG2319 138 LWDLSTPGKLI--------------------------------------------------------------------- 148 (466)
T ss_pred EEEecCCCeEE---------------------------------------------------------------------
Confidence 998765 2111
Q ss_pred ceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEE
Q 004214 179 DVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVA 258 (768)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 258 (768)
....+|...+..+.|.+.. ..++.+
T Consensus 149 ------------------------------------------------------~~~~~~~~~v~~~~~~~~~-~~~~~~ 173 (466)
T COG2319 149 ------------------------------------------------------RTLEGHSESVTSLAFSPDG-KLLASG 173 (466)
T ss_pred ------------------------------------------------------EEEecCcccEEEEEECCCC-CEEEec
Confidence 2223344556667776544 366666
Q ss_pred eC-CCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEE-eeecccCcEEEEEEe
Q 004214 259 TN-IEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVG-VGTGHMGAVGAVAFS 336 (768)
Q Consensus 259 ~~-~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~~ 336 (768)
+. ++.+++|+...+.....+.+|...+.+++ +.+.+..++++++.|+.|++||...+.... .+.+|.... ...|+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~ 250 (466)
T COG2319 174 SSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLA--FSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFS 250 (466)
T ss_pred CCCCCceEEEEcCCCceEEeeccCCCceEEEE--EcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeEC
Confidence 64 89999999999888889999999999998 556666446666999999999999888887 688888876 44899
Q ss_pred cCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEE
Q 004214 337 KKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVV 416 (768)
Q Consensus 337 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~ 416 (768)
|++ .++++++.|+.+++|++..... .......|...+.++.|+|++..+++++.|+.+.+|+..+.....
T Consensus 251 ~~~-~~~~~~~~d~~~~~~~~~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 320 (466)
T COG2319 251 PDG-SLLASGSSDGTIRLWDLRSSSS---------LLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLS 320 (466)
T ss_pred CCC-CEEEEecCCCcEEEeeecCCCc---------EEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEE
Confidence 997 5788999999999999985432 122226778999999999988888889999999999998887777
Q ss_pred EEe--ccCCCeEEEEEccCCCEEEEe-eCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEE-EeCCCcEEEEE
Q 004214 417 TFR--GHKRGIWSVEFSPVDQVVITA-SGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVS-CGADGLVKLWT 492 (768)
Q Consensus 417 ~~~--~~~~~v~~v~~s~~~~~l~t~-~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s-~~~dg~i~iwd 492 (768)
... .|...+..+.|.+++..++.+ ..|+.+.+|++............. .+..+.+.+ ...... +..++.+.+|+
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 398 (466)
T COG2319 321 SLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHS-NVLSVSFSP-DGRVVSSGSTDGTVRLWD 398 (466)
T ss_pred EeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCc-eEEEEEECC-CCCEEEEecCCCceEEEe
Confidence 666 788889999994332455555 688999999998877333333222 288889988 544444 68899999999
Q ss_pred CCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 004214 493 VRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDST 537 (768)
Q Consensus 493 ~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~ 537 (768)
............+...+....+++++..+++++.++.+.+|+..+
T Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 399 LSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred cccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 999988887775547899999999999999999999999999887
No 151
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.90 E-value=6.1e-19 Score=176.19 Aligned_cols=403 Identities=16% Similarity=0.226 Sum_probs=273.1
Q ss_pred cEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeee
Q 004214 32 VVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLT 111 (768)
Q Consensus 32 ~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~ 111 (768)
.|..++|-|||...++|.| ..+.+||...|..+.++++|...|.+++|+.||+.++||+.|..|.+|.-. .+.+..
T Consensus 14 ci~d~afkPDGsqL~lAAg---~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~k-lEG~Lk 89 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG---SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSK-LEGILK 89 (1081)
T ss_pred chheeEECCCCceEEEecC---CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccc-ccceee
Confidence 8899999999998555443 469999999999999999999999999999999999999999999999754 344556
Q ss_pred eecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCccc
Q 004214 112 VPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKR 191 (768)
Q Consensus 112 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (768)
..+...+.++.|.|-...++ + +.-...-+|..+...+...+. ..
T Consensus 90 YSH~D~IQCMsFNP~~h~La-----------------------s-CsLsdFglWS~~qK~V~K~ks------------s~ 133 (1081)
T KOG1538|consen 90 YSHNDAIQCMSFNPITHQLA-----------------------S-CSLSDFGLWSPEQKSVSKHKS------------SS 133 (1081)
T ss_pred eccCCeeeEeecCchHHHhh-----------------------h-cchhhccccChhhhhHHhhhh------------he
Confidence 67778899999998765332 2 222245567665553332222 24
Q ss_pred ceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCC----CEEEEEeCCCcEEEE
Q 004214 192 GFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEE----QYLAVATNIEQVQVY 267 (768)
Q Consensus 192 ~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~l~~~~~~~~i~i~ 267 (768)
.+.++++..++..++.+..+|+|.+-+....+ .....+..|.+++|.+++|+|..+ ..+++...+.++.+|
T Consensus 134 R~~~CsWtnDGqylalG~~nGTIsiRNk~gEe-----k~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy 208 (1081)
T KOG1538|consen 134 RIICCSWTNDGQYLALGMFNGTISIRNKNGEE-----KVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFY 208 (1081)
T ss_pred eEEEeeecCCCcEEEEeccCceEEeecCCCCc-----ceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEE
Confidence 56778899999999999999999988655442 233455678899999999987543 578888888888888
Q ss_pred ECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEe
Q 004214 268 DLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGS 347 (768)
Q Consensus 268 d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~ 347 (768)
.+.....- .-..-.-...|+. ++++|.. +..|+.|+.+.+|- +.|-.+.+.......|+.++..|+++ .++.|+
T Consensus 209 ~LsG~~Ig-k~r~L~FdP~Cis--Yf~NGEy-~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ-~v~~GC 282 (1081)
T KOG1538|consen 209 QLSGKQIG-KDRALNFDPCCIS--YFTNGEY-ILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQ-YVVVGC 282 (1081)
T ss_pred Eecceeec-ccccCCCCchhhe--eccCCcE-EEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEccCCc-eEEEEE
Confidence 77543322 1122223345776 7788887 88899999999985 45666677666788999999999977 789999
Q ss_pred CCCeEEEEeCCCCCCCC----------------------ccc--------------------cccc--------------
Q 004214 348 SDHTIKVWSFDGLSDDA----------------------EQP--------------------MNLK-------------- 371 (768)
Q Consensus 348 ~dg~i~iwd~~~~~~~~----------------------~~~--------------------~~~~-------------- 371 (768)
.||+|-.|++-....-. ... ....
T Consensus 283 qDGTiACyNl~fSTVH~ly~~RYA~R~sMtDVivQhLi~~qkvrIkC~DLVkKiaiYrnrLAVQLpeki~iYel~se~~~ 362 (1081)
T KOG1538|consen 283 QDGTIACYNLIFSTVHGLYKDRYAYRDSMTDVIVQHLITEQKVRIKCKDLVKKIAIYRNRLAVQLPEKILIYELYSEDLS 362 (1081)
T ss_pred ccCeeehhhhHHhHhhhhhHHhhhhhhhhHHHHHHHHhhcceeeeeHHHHHHHHHhhhhhheecccceEEEEeccccccc
Confidence 99999999864210000 000 0000
Q ss_pred -----------------ee-----eEeeccCCCeEEEEEc---------------------c-CCCEEEEEeCCCcEEEE
Q 004214 372 -----------------AK-----AVVAAHGKDINSLAVA---------------------P-NDSLVCTGSQDRTACVW 407 (768)
Q Consensus 372 -----------------~~-----~~~~~~~~~i~~~~~s---------------------~-~~~~l~~~~~dg~i~i~ 407 (768)
.. ...........|+.|. | ...-+++|..||.|.-.
T Consensus 363 ~mhY~v~ekI~kkf~cSLlVVc~~HiVlCqekrLqClDF~Gvk~ReW~M~S~iRYikV~GGP~gREgL~vGlknGqV~ki 442 (1081)
T KOG1538|consen 363 DMHYRVKEKIIKKFECSLLVVCANHIVLCQEKRLQCLDFSGVKEREWQMESLIRYIKVIGGPPGREGLLVGLKNGQVLKI 442 (1081)
T ss_pred cchhHHHHHHHhhccceEEEEEcCeEEEEcccceeeecccchhhhhhhHHHHHHhhhhhcCCCCcceeEEEecCCcEEEE
Confidence 00 0000111222233332 1 11234455555544332
Q ss_pred eCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCc
Q 004214 408 RLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGL 487 (768)
Q Consensus 408 d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~ 487 (768)
-+++.-++. +......|.|+.++.+...||+....++..++|+.+++.+..- ..+.+++|+....-+++-+..|.
T Consensus 443 F~dN~~PiL-l~~~~tAvrClDINA~R~kLAvVDD~~~c~v~DI~t~elL~QE----pg~nSV~wNT~~E~MlcfT~~g~ 517 (1081)
T KOG1538|consen 443 FVDNLFPIL-LLKQATAVRCLDINASRKKLAVVDDNDTCLVYDIDTKELLFQE----PGANSVAWNTQCEDMLCFTGGGY 517 (1081)
T ss_pred EecCCchhh-eecccceeEEeeccCCcceEEEEccCCeEEEEEccCCceEeec----CCCceEEeeccccceEEEecCCc
Confidence 233322222 2224567999999999999999999999999999999877654 34677888765443433333355
Q ss_pred EEE
Q 004214 488 VKL 490 (768)
Q Consensus 488 i~i 490 (768)
+.|
T Consensus 518 L~V 520 (1081)
T KOG1538|consen 518 LNV 520 (1081)
T ss_pred eEE
Confidence 444
No 152
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=4.2e-22 Score=190.71 Aligned_cols=287 Identities=16% Similarity=0.204 Sum_probs=227.0
Q ss_pred CcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEE
Q 004214 188 DSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVY 267 (768)
Q Consensus 188 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~ 267 (768)
....+++++.|+|....+++++.|+.+++|.+.....+. ...+.-...+|.+++|.+.+...+++++....++.|
T Consensus 211 ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~-----lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysy 285 (514)
T KOG2055|consen 211 PSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPK-----LQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSY 285 (514)
T ss_pred cCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChh-----heeeeeccCccceeeecCCCceEEEecccceEEEEe
Confidence 345789999999999999999999999999998775442 233344466889999998776699999999999999
Q ss_pred ECCCceeeee--eeCCcc-ceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEE
Q 004214 268 DLSSMSCSYV--LAGHSE-IVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLV 344 (768)
Q Consensus 268 d~~~~~~~~~--~~~~~~-~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 344 (768)
|+.+.+.... +.++.. .+.... .++++. +|+..+..|.|.+....+++.+..++ -.+.|..++|+.+++ .|+
T Consensus 286 Dle~ak~~k~~~~~g~e~~~~e~Fe--VShd~~-fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk-~l~ 360 (514)
T KOG2055|consen 286 DLETAKVTKLKPPYGVEEKSMERFE--VSHDSN-FIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSK-ELL 360 (514)
T ss_pred eccccccccccCCCCcccchhheeE--ecCCCC-eEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCc-EEE
Confidence 9998876543 344432 222222 345555 59999999999999999999988877 568899999999976 677
Q ss_pred EEeCCCeEEEEeCCCCCCCCccccccceeeEee-ccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC------CceEEE
Q 004214 345 SGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVA-AHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPD------LVSVVT 417 (768)
Q Consensus 345 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~------~~~~~~ 417 (768)
+++.+|.|.+||++.. .....+. ...-.-++++.++++.+||+|+..|.|.|||..+ .+++..
T Consensus 361 ~~~~~GeV~v~nl~~~----------~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~ 430 (514)
T KOG2055|consen 361 ASGGTGEVYVWNLRQN----------SCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKT 430 (514)
T ss_pred EEcCCceEEEEecCCc----------ceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhh
Confidence 7888899999999853 2222222 2223447788899999999999999999999653 466777
Q ss_pred EeccCCCeEEEEEccCCCEEEEeeC--CCcEEEEeCCCCceeEEeecC---CCcEEEEEEEeCCCEEEEEeCCCcEEEEE
Q 004214 418 FRGHKRGIWSVEFSPVDQVVITASG--DKTIKIWSISDGSCLKTFEGH---TSSVLRASFLTRGAQIVSCGADGLVKLWT 492 (768)
Q Consensus 418 ~~~~~~~v~~v~~s~~~~~l~t~~~--d~~i~iwd~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~s~~~dg~i~iwd 492 (768)
+..-...|+++.|+|+.++||.+|. +..+|+-.+.+......|... -+.|+|++|+|.|.+|+.|..+|.|.+|.
T Consensus 431 ~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~k 510 (514)
T KOG2055|consen 431 VDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFK 510 (514)
T ss_pred hhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEe
Confidence 7667789999999999999998875 667999998877766666533 35689999999999999999999999998
Q ss_pred CC
Q 004214 493 VR 494 (768)
Q Consensus 493 ~~ 494 (768)
+.
T Consensus 511 L~ 512 (514)
T KOG2055|consen 511 LH 512 (514)
T ss_pred ec
Confidence 74
No 153
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=3.5e-20 Score=192.28 Aligned_cols=495 Identities=15% Similarity=0.171 Sum_probs=315.1
Q ss_pred ecCCCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCc-cEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcC
Q 004214 6 EGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDK-SLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITS 84 (768)
Q Consensus 6 g~~dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~-~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~ 84 (768)
+..+..|.||...+|.|++.|.+|..+++.+.+.|.... .++.+++.||.|++||...+.++.++..+.. +..+.+.|
T Consensus 33 ~~~~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~-v~~~~~~~ 111 (792)
T KOG1963|consen 33 LCTGNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLP-VHALVYKP 111 (792)
T ss_pred EeeCCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCc-eeEEEech
Confidence 345789999999999999999999999999999886553 5688999999999999999999999875433 44444432
Q ss_pred ---CCCEEEEEe-CCCeE-EEEECCCCeeeeeee-------------cceeEeeEEecCCCCCccccccccchhhhhccc
Q 004214 85 ---DGSTLISAG-RDKVV-NLWDLRDYSCKLTVP-------------TYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKR 146 (768)
Q Consensus 85 ---d~~~L~s~~-~dg~i-~vWd~~~~~~~~~~~-------------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (768)
+....+..+ .|..+ .-...........+. .......+...+.
T Consensus 112 ~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~-------------------- 171 (792)
T KOG1963|consen 112 AQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNS-------------------- 171 (792)
T ss_pred hHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCC--------------------
Confidence 111222222 11111 101111111000000 0000111122221
Q ss_pred CCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccc
Q 004214 147 RSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKK 226 (768)
Q Consensus 147 ~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~ 226 (768)
..+.....+..+.+|....+.-. ... ......+...+++..++|.+..++++..||+|.+|.-.....
T Consensus 172 ----ge~~~i~~~~~~~~~~v~~~~~~-~~~-----~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~-- 239 (792)
T KOG1963|consen 172 ----GEFKGIVHMCKIHIYFVPKHTKH-TSS-----RDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSD-- 239 (792)
T ss_pred ----ceEEEEEEeeeEEEEEeccccee-ecc-----chhhhhhcccceeEEeccccceEEEeccCCcEEEEecccccc--
Confidence 23444445556777777665310 000 001112223368899999999999999999999998765322
Q ss_pred eeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCC
Q 004214 227 MELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKD 306 (768)
Q Consensus 227 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~d 306 (768)
.......+.=|..+|.+++|++ ++.+|++|+..+.+.+|.+.+++ .+.++.-.++|..+. +++++.. .+....|
T Consensus 240 -~~~t~t~lHWH~~~V~~L~fS~-~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~--vS~ds~~-~sl~~~D 313 (792)
T KOG1963|consen 240 -DSETCTLLHWHHDEVNSLSFSS-DGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIV--VSPDSDL-YSLVLED 313 (792)
T ss_pred -ccccceEEEecccccceeEEec-CCceEeecccceEEEEEeecCCC-cccccccCCeeEEEE--EcCCCCe-EEEEecC
Confidence 1223344556788999999995 88899999999999999999998 556777788888886 6666665 7777789
Q ss_pred CeEEEEeCCCceEEEeeec-----------ccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeE
Q 004214 307 NSVRLWDSESRCCVGVGTG-----------HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAV 375 (768)
Q Consensus 307 g~i~iwd~~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 375 (768)
+.|.+....+......+.+ ..+-.+.++++|. .+.++-.+..|.|.+||+-.................
T Consensus 314 NqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr-~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~ 392 (792)
T KOG1963|consen 314 NQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPR-TNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSD 392 (792)
T ss_pred ceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCC-CCceeecCCCceEEEEeccccceeeeEEEEeecccC
Confidence 9999998766554444332 2344677888885 335788889999999998754322111000000000
Q ss_pred ee-ccCCCeEEEEEccCCCEEEEEeC--------CC--cEEEEeCCCCceEE-----EEeccCCCeEEEEEccC--CCEE
Q 004214 376 VA-AHGKDINSLAVAPNDSLVCTGSQ--------DR--TACVWRLPDLVSVV-----TFRGHKRGIWSVEFSPV--DQVV 437 (768)
Q Consensus 376 ~~-~~~~~i~~~~~s~~~~~l~~~~~--------dg--~i~i~d~~~~~~~~-----~~~~~~~~v~~v~~s~~--~~~l 437 (768)
-. .+...+++++.+..|.+++++-. || .+++|-......-. ....|...+...++.+. ...+
T Consensus 393 ~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~ 472 (792)
T KOG1963|consen 393 GDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRC 472 (792)
T ss_pred CcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCccccee
Confidence 00 23345788888888999988642 33 57888765443222 22357777666666543 3379
Q ss_pred EEeeCCCcEEEEeCCCC----------ceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCC-CeEEEEeccCC
Q 004214 438 ITASGDKTIKIWSISDG----------SCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRT-GECIATYDKHE 506 (768)
Q Consensus 438 ~t~~~d~~i~iwd~~~~----------~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~ 506 (768)
++++.||.++||-+.+. .|...-.-|..+++.++|+.||..|+ .+.|++|.+||..+ .+.........
T Consensus 473 vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla-~s~~~~Itiwd~~~~~~l~~~~~~~~ 551 (792)
T KOG1963|consen 473 VTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLA-VSFDDTITIWDYDTKNELLCTEGSRN 551 (792)
T ss_pred EEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEE-EecCCEEEEecCCChhhhhccccccc
Confidence 99999999999998432 23322224788999999999995554 56678999999988 44444443333
Q ss_pred CcEEEEEEcCCC--CEEEEEeCCCcEEEEEcCCHHHH
Q 004214 507 DKIWALAVGKKT--EMFATGGSDALVNLWHDSTAAER 541 (768)
Q Consensus 507 ~~v~~l~~s~~~--~~l~s~~~dg~v~vw~~~~~~~~ 541 (768)
.++..+.+.... ...+.....+.+.+|++.+....
T Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~WNll~~~l~ 588 (792)
T KOG1963|consen 552 WPIAELLFTAQTQNDGALVHATQQRLSVWNLLSMSLI 588 (792)
T ss_pred cchHhHhhhcccccccceeeccCceEehHhhhhhhee
Confidence 344444333211 12233445677899998766543
No 154
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=3.3e-21 Score=175.24 Aligned_cols=267 Identities=15% Similarity=0.305 Sum_probs=200.1
Q ss_pred EcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCC----CeeEEEecCccceeEEEEEcC--CCCEEEEEeCCCeEEE
Q 004214 27 KGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLA----KKCVATLDKHFSRVTSMAITS--DGSTLISAGRDKVVNL 100 (768)
Q Consensus 27 ~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~----~~~~~~l~~h~~~V~~l~fs~--d~~~L~s~~~dg~i~v 100 (768)
.+|.+-|.++.|.+.|++ +|+|+.|++|+|||..+ -.+....+.|.+.|..+.|.+ -|+.+|+++.|+++.|
T Consensus 10 s~h~DlihdVs~D~~GRR--mAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~i 87 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRR--MATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSI 87 (361)
T ss_pred cCCcceeeeeeecccCce--eeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceee
Confidence 479999999999999999 99999999999999643 356677889999999999965 5899999999999999
Q ss_pred EECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCce
Q 004214 101 WDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDV 180 (768)
Q Consensus 101 Wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~ 180 (768)
|.-.... ... .
T Consensus 88 WEE~~~~----~~~-----------~------------------------------------------------------ 98 (361)
T KOG2445|consen 88 WEEQEKS----EEA-----------H------------------------------------------------------ 98 (361)
T ss_pred eeecccc----ccc-----------c------------------------------------------------------
Confidence 9643110 000 0
Q ss_pred eecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCC-CCEEEEEe
Q 004214 181 TISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEE-EQYLAVAT 259 (768)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~ 259 (768)
.........+....+.|+++.|.|.. +-.||+++
T Consensus 99 ---------------------------------------------~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~ 133 (361)
T KOG2445|consen 99 ---------------------------------------------GRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAAS 133 (361)
T ss_pred ---------------------------------------------cceeEEEEEeecCCcceeEEEecchhcceEEEEec
Confidence 00111223344556688899997743 55788899
Q ss_pred CCCcEEEEECCCcee------eeee-------eCCccceEEEeeeeecCCCEEEEEEeCC-----CeEEEEeCCCc----
Q 004214 260 NIEQVQVYDLSSMSC------SYVL-------AGHSEIVLCLDTCALSSGKILIVTGSKD-----NSVRLWDSESR---- 317 (768)
Q Consensus 260 ~~~~i~i~d~~~~~~------~~~~-------~~~~~~v~~l~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~---- 317 (768)
.||.++||+....-. ...+ ..+..+..|+.|+...-...+|+.|+.+ +.+.||....+
T Consensus 134 aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw 213 (361)
T KOG2445|consen 134 ADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKW 213 (361)
T ss_pred cCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCccee
Confidence 999999998754322 2222 2467788899877655566778888766 57888876543
Q ss_pred eEEEeeecccCcEEEEEEecCCC---cEEEEEeCCCeEEEEeCCCCC----------CCCccccccceeeEeeccCCCeE
Q 004214 318 CCVGVGTGHMGAVGAVAFSKKLQ---NFLVSGSSDHTIKVWSFDGLS----------DDAEQPMNLKAKAVVAAHGKDIN 384 (768)
Q Consensus 318 ~~~~~~~~~~~~v~~~~~~~~~~---~~l~s~~~dg~i~iwd~~~~~----------~~~~~~~~~~~~~~~~~~~~~i~ 384 (768)
..+..+.+|+.+|+.++|.|+-. .++++++.|| |+||.+.... ..............+..|.+.|.
T Consensus 214 ~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VW 292 (361)
T KOG2445|consen 214 LKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVW 292 (361)
T ss_pred eeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceE
Confidence 23456779999999999999743 4799999999 9999998421 11122234445566778999999
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEeCC
Q 004214 385 SLAVAPNDSLVCTGSQDRTACVWRLP 410 (768)
Q Consensus 385 ~~~~s~~~~~l~~~~~dg~i~i~d~~ 410 (768)
.+.|+-.|..|++.+.||.|++|...
T Consensus 293 rv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 293 RVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred EEEEeeeeeEEeecCCCceeeehhhh
Confidence 99999999999999999999999753
No 155
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.89 E-value=1.1e-21 Score=189.18 Aligned_cols=211 Identities=16% Similarity=0.227 Sum_probs=182.4
Q ss_pred CEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecc-cCcEE
Q 004214 253 QYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGH-MGAVG 331 (768)
Q Consensus 253 ~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~ 331 (768)
.+++.|+..+.|.|||+....+.+.+.+|...|+++. +...+.+ |++++..|.|.|..+.++.....+... ...|.
T Consensus 92 ~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~--YN~~Dey-iAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvR 168 (673)
T KOG4378|consen 92 LYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVD--YNNTDEY-IASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVR 168 (673)
T ss_pred eeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEE--ecCCcce-eEEeccCCcEEEEecccCccccceecCCCCeEE
Confidence 5788888899999999998888999999999999997 6666665 999999999999999998877777655 44566
Q ss_pred EEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCC
Q 004214 332 AVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQDRTACVWRLP 410 (768)
Q Consensus 332 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~ 410 (768)
-+.|+|..+.+|.+++.+|.|.+||+.... +.......|..+...++|+| +..+|++.+.|..|.+||..
T Consensus 169 ll~ys~skr~lL~~asd~G~VtlwDv~g~s---------p~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~ 239 (673)
T KOG4378|consen 169 LLRYSPSKRFLLSIASDKGAVTLWDVQGMS---------PIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIR 239 (673)
T ss_pred EeecccccceeeEeeccCCeEEEEeccCCC---------cccchhhhccCCcCcceecCCccceEEEecccceEEEeecc
Confidence 999999988899999999999999998643 23344567999999999999 56788999999999999998
Q ss_pred CCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCC-CceeEEeecCCCcEEEEEEEeCC
Q 004214 411 DLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISD-GSCLKTFEGHTSSVLRASFLTRG 476 (768)
Q Consensus 411 ~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~ 476 (768)
..+....+. ...+.++++|+++|.+|++|...|.|..||++. ..++..+..|...|++++|-+..
T Consensus 240 s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 240 SQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred cccccceee-ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 777666655 567899999999999999999999999999986 46889999999999999997764
No 156
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=1.4e-21 Score=186.53 Aligned_cols=289 Identities=21% Similarity=0.316 Sum_probs=208.3
Q ss_pred EEEEccCCCceEEEEecC---eEEEEeeccCcccceeeEEEeeecccCCceeEEEEec------CCCCEEEEEeCCCcEE
Q 004214 195 AATVLPSNQGLLCVTADQ---QLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLG------EEEQYLAVATNIEQVQ 265 (768)
Q Consensus 195 ~~~~~~~~~~l~~~~~dg---~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------~~~~~l~~~~~~~~i~ 265 (768)
-..+-|..+.++|+-.+. .+.+|-..... ..+.....+. ......|+.|.. ..++++|+|+.+..|.
T Consensus 130 e~~V~psDnlIl~ar~eddvs~LEvYVyn~~e---~nlYvHHD~i-lpafPLC~ewld~~~~~~~~gNyvAiGtmdp~Ie 205 (463)
T KOG0270|consen 130 EEQVKPSDNLILCARNEDDVSYLEVYVYNEEE---ENLYVHHDFI-LPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIE 205 (463)
T ss_pred cceeccCCcEEEEeeccCCceEEEEEEEcCCC---cceeEeccee-ccCcchhhhhhhcCCCCCCCcceEEEeccCceeE
Confidence 445567777777776543 23333322221 1121111111 122334555532 3467999999999999
Q ss_pred EEECCCcee---------------------eeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeee
Q 004214 266 VYDLSSMSC---------------------SYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGT 324 (768)
Q Consensus 266 i~d~~~~~~---------------------~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 324 (768)
|||+.-... .....+|++.|..+. +...-+.+|++|+.|.+|.+||+.++++..++.
T Consensus 206 IWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls--~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~ 283 (463)
T KOG0270|consen 206 IWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALS--WNRNFRNVLASGSADKTVKLWDVDTGKPKSSIT 283 (463)
T ss_pred EeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHH--hccccceeEEecCCCceEEEEEcCCCCcceehh
Confidence 999852111 011246888888887 555566689999999999999999999999999
Q ss_pred cccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccC-CCEEEEEeCCCc
Q 004214 325 GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN-DSLVCTGSQDRT 403 (768)
Q Consensus 325 ~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~ 403 (768)
.|.+.|.++.|+|..+.+|++|+.|++|.+.|.+.... ....-...+.|-.++|.|. ...+++++.||+
T Consensus 284 ~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~----------s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~ 353 (463)
T KOG0270|consen 284 HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSN----------SGKEWKFDGEVEKVAWDPHSENSFFVSTDDGT 353 (463)
T ss_pred hcCCceeEEEecCCCceEEEeccccceEEeeeccCccc----------cCceEEeccceEEEEecCCCceeEEEecCCce
Confidence 99999999999999999999999999999999985221 1111223567899999994 567788889999
Q ss_pred EEEEeCCCC-ceEEEEeccCCCeEEEEEccCC-CEEEEeeCCCcEEEEeCCCCceeEEeecCC---CcEEEEEEEeCCC-
Q 004214 404 ACVWRLPDL-VSVVTFRGHKRGIWSVEFSPVD-QVVITASGDKTIKIWSISDGSCLKTFEGHT---SSVLRASFLTRGA- 477 (768)
Q Consensus 404 i~i~d~~~~-~~~~~~~~~~~~v~~v~~s~~~-~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~---~~v~~~~~s~~~~- 477 (768)
++-+|++.. +++.+++.|..+|.++++++.- .+++|++.|+.|++|++....+-.... |. +...|.++.|+-.
T Consensus 354 v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~-~~~~~~rl~c~~~~~~~a~ 432 (463)
T KOG0270|consen 354 VYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKE-HSFKLGRLHCFALDPDVAF 432 (463)
T ss_pred EEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCccccc-ccccccceeecccCCCcce
Confidence 999999876 8999999999999999999864 688999999999999986544322111 22 2345556666544
Q ss_pred EEEEEeCCCcEEEEECCCCeEEE
Q 004214 478 QIVSCGADGLVKLWTVRTGECIA 500 (768)
Q Consensus 478 ~l~s~~~dg~i~iwd~~~~~~~~ 500 (768)
.++.|+..+.++|||+.++..+.
T Consensus 433 ~la~GG~k~~~~vwd~~~~~~V~ 455 (463)
T KOG0270|consen 433 TLAFGGEKAVLRVWDIFTNSPVR 455 (463)
T ss_pred EEEecCccceEEEeecccChhHH
Confidence 56778888889999998876554
No 157
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.89 E-value=1.1e-21 Score=183.11 Aligned_cols=248 Identities=24% Similarity=0.346 Sum_probs=190.4
Q ss_pred eecccCCceeEEEEecC-CCCEEEEEeCCCcEEEEECCC----------------ceeeeeeeCCccceEEEeeeeecCC
Q 004214 234 RLVGYNEEILDLKFLGE-EEQYLAVATNIEQVQVYDLSS----------------MSCSYVLAGHSEIVLCLDTCALSSG 296 (768)
Q Consensus 234 ~~~~~~~~i~~~~~~~~-~~~~l~~~~~~~~i~i~d~~~----------------~~~~~~~~~~~~~v~~l~~~~~~~~ 296 (768)
...+|.+.+..+...+- +..+.++-+..|.|+||++.. .+.+.++.+|...=++++ ++|-.
T Consensus 146 ~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~Ld--WSp~~ 223 (440)
T KOG0302|consen 146 KSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLD--WSPIK 223 (440)
T ss_pred cccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeee--ccccc
Confidence 34455556666555443 566777788899999999853 345677888998888888 44432
Q ss_pred CEEEEEEeCCCeEEEEeCCCceEEE---eeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCcccccccee
Q 004214 297 KILIVTGSKDNSVRLWDSESRCCVG---VGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAK 373 (768)
Q Consensus 297 ~~~l~~~~~dg~i~iwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 373 (768)
.-.+++|..-+.|++|...++.... .+.+|+..|-.++|+|....+|++|+-||+|+|||++... .+..
T Consensus 224 ~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~--------~~~~ 295 (440)
T KOG0302|consen 224 TGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGP--------KKAA 295 (440)
T ss_pred ccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCC--------ccce
Confidence 2238899888999999988876433 3567999999999999999999999999999999999762 2334
Q ss_pred eEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC---CceEEEEeccCCCeEEEEEccC-CCEEEEeeCCCcEEEE
Q 004214 374 AVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPD---LVSVVTFRGHKRGIWSVEFSPV-DQVVITASGDKTIKIW 449 (768)
Q Consensus 374 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~---~~~~~~~~~~~~~v~~v~~s~~-~~~l~t~~~d~~i~iw 449 (768)
....+|...|+.+.|+.+-.+||+|+.||+++|||++. ++++..++-|..+|+++.|+|. ...|++++.|.+|.||
T Consensus 296 ~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiW 375 (440)
T KOG0302|consen 296 VSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIW 375 (440)
T ss_pred eEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEE
Confidence 44488999999999999888999999999999999975 5688899999999999999996 4678888999999999
Q ss_pred eCCCCce----------------eEEeecC--CCcEEEEEEEeCC-CEEEEEeCCCcEEEEE
Q 004214 450 SISDGSC----------------LKTFEGH--TSSVLRASFLTRG-AQIVSCGADGLVKLWT 492 (768)
Q Consensus 450 d~~~~~~----------------~~~~~~~--~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd 492 (768)
|+.--.- .+-+.-| ...+-.+.|+++- .+|++.+.|| +.||.
T Consensus 376 DlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 376 DLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVFK 436 (440)
T ss_pred EeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEEE
Confidence 9853210 1111123 3456677887753 3788888888 45553
No 158
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.89 E-value=3.5e-21 Score=176.62 Aligned_cols=294 Identities=18% Similarity=0.253 Sum_probs=221.6
Q ss_pred eeecccCCceeEEEEec---C-CCCEEEEEeCCCcEEEEECCCceeeeeee-----CCccceEEEeeeeecC-CCEEEEE
Q 004214 233 KRLVGYNEEILDLKFLG---E-EEQYLAVATNIEQVQVYDLSSMSCSYVLA-----GHSEIVLCLDTCALSS-GKILIVT 302 (768)
Q Consensus 233 ~~~~~~~~~i~~~~~~~---~-~~~~l~~~~~~~~i~i~d~~~~~~~~~~~-----~~~~~v~~l~~~~~~~-~~~~l~~ 302 (768)
+...+++.+|..++|.+ . ..+.+++++. ..+.+|.....--++.++ .|......++|++... +..++++
T Consensus 32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~ 110 (385)
T KOG1034|consen 32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAA 110 (385)
T ss_pred ehhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEe
Confidence 34456778899999863 2 3344555444 788888876544333332 3566666677666655 5778999
Q ss_pred EeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCC
Q 004214 303 GSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKD 382 (768)
Q Consensus 303 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (768)
|+.-|.|++.|+.++++...+.+|...|..+.+.|..++++++++.|.+|++|++++... .....-..+|...
T Consensus 111 ~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~C-------v~VfGG~egHrde 183 (385)
T KOG1034|consen 111 GGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVC-------VAVFGGVEGHRDE 183 (385)
T ss_pred ecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeE-------EEEecccccccCc
Confidence 999999999999999999999999999999999999999999999999999999985421 1122234679999
Q ss_pred eEEEEEccCCCEEEEEeCCCcEEEEeCCCCce------E----------------E------EEeccCCCeEEEEEccCC
Q 004214 383 INSLAVAPNDSLVCTGSQDRTACVWRLPDLVS------V----------------V------TFRGHKRGIWSVEFSPVD 434 (768)
Q Consensus 383 i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~------~----------------~------~~~~~~~~v~~v~~s~~~ 434 (768)
|.++.|+++|.+|++++.|.++++|++...+. . . +-..|...|-|+.|- |
T Consensus 184 VLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--g 261 (385)
T KOG1034|consen 184 VLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--G 261 (385)
T ss_pred EEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--h
Confidence 99999999999999999999999999873211 0 0 122366777777776 7
Q ss_pred CEEEEeeCCCcEEEEeCC-CC-------------ceeEEeecCCCcEEEEEE--EeCCCEEEEEeCCCcEEEEECCCCeE
Q 004214 435 QVVITASGDKTIKIWSIS-DG-------------SCLKTFEGHTSSVLRASF--LTRGAQIVSCGADGLVKLWTVRTGEC 498 (768)
Q Consensus 435 ~~l~t~~~d~~i~iwd~~-~~-------------~~~~~~~~~~~~v~~~~~--s~~~~~l~s~~~dg~i~iwd~~~~~~ 498 (768)
+++++-+-++.|..|-.. -+ ..+.++.-....|.-+.| .|-++.|+.|...|.|++||++..++
T Consensus 262 d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep 341 (385)
T KOG1034|consen 262 DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEP 341 (385)
T ss_pred hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCC
Confidence 899998888999999861 11 123444445556666655 46688999999999999999998765
Q ss_pred E--EEec--cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 004214 499 I--ATYD--KHEDKIWALAVGKKTEMFATGGSDALVNLWHDS 536 (768)
Q Consensus 499 ~--~~~~--~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~ 536 (768)
. .++. .....|...+||.|+..|+....|+.|.-||..
T Consensus 342 ~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 342 PKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred ccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 2 1221 234568899999999999999999999999854
No 159
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.89 E-value=1.2e-21 Score=194.92 Aligned_cols=307 Identities=17% Similarity=0.252 Sum_probs=205.2
Q ss_pred EEEeecCCCcEEEEECCCCEE------EEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEE--ecCc
Q 004214 2 FALLEGADRKVLVWDVDGGFC------THYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVAT--LDKH 73 (768)
Q Consensus 2 ~latg~~dg~i~vwd~~~~~~------~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~--l~~h 73 (768)
+||.+-.||.|.++|...-.. +.....|.+.|..+.|-| |+ ..|++++.|.++++||+.+++++.. +.||
T Consensus 66 iLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap-ge-~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH 143 (720)
T KOG0321|consen 66 ILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP-GE-SLLVSASGDSTIRPWDVKTSRLVGGRLNLGH 143 (720)
T ss_pred eEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCC-Cc-eeEEEccCCceeeeeeeccceeecceeeccc
Confidence 588999999999999865432 244557999999999999 43 4599999999999999999999877 8999
Q ss_pred cceeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEec-C-CCCCccccccccc------hhhhhc
Q 004214 74 FSRVTSMAITSDGS-TLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAI-P-PGSAFDSFLSSYN------QQTIKK 144 (768)
Q Consensus 74 ~~~V~~l~fs~d~~-~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~-~-~~~~~~~~~~~~~------~~~~~~ 144 (768)
.+.|.+++|.|++. .+++||.||.|.|||++-...-..-.....+....-. | +............ ......
T Consensus 144 ~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTv 223 (720)
T KOG0321|consen 144 TGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTV 223 (720)
T ss_pred ccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEE
Confidence 99999999999654 6789999999999998643310000000000000000 0 0000000000000 000001
Q ss_pred ccCCcceEEEEeeC-CcEEEEEEcCCceeeeecCCceeeccc-ccCcccceeEEEEccCCCceEEEEecCeEEEEeeccC
Q 004214 145 KRRSLEIHFITVGE-RGIVRMWNADSACLYEQKSSDVTISFE-MDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEV 222 (768)
Q Consensus 145 ~~~~~~~~~~~~~~-~g~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~ 222 (768)
....++..++++|. |+.|++||+................+. ......+++.+.....+.++++...|+.|++|++...
T Consensus 224 v~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~ 303 (720)
T KOG0321|consen 224 VLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSL 303 (720)
T ss_pred EEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEecccc
Confidence 11123447788887 999999999988433322222211111 1333567788888888999999999999999998865
Q ss_pred cccceeeEEEeeeccc-CCceeEEEEecCCCCEEEEEeCCCcEEEEECCCcee-eeeeeCCccceEEEeeeeecCCCEEE
Q 004214 223 PEKKMELILSKRLVGY-NEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSC-SYVLAGHSEIVLCLDTCALSSGKILI 300 (768)
Q Consensus 223 ~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~-~~~~~~~~~~v~~l~~~~~~~~~~~l 300 (768)
..... ....++ ...++--....+++.+++.|+.++..++|.+.+.+. ...+.+|.-.|++++|+..+... +
T Consensus 304 s~sP~-----~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~--v 376 (720)
T KOG0321|consen 304 SISPV-----AEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTP--V 376 (720)
T ss_pred CcCch-----hhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCC--c
Confidence 42111 111111 122222333567999999999999999999987654 45678999999999976665554 7
Q ss_pred EEEeCCCeEEEEeCCCc
Q 004214 301 VTGSKDNSVRLWDSESR 317 (768)
Q Consensus 301 ~~~~~dg~i~iwd~~~~ 317 (768)
++++.|..+++|++..+
T Consensus 377 ~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 377 ATCSDDFRVKIWRLSNG 393 (720)
T ss_pred eeeccCcceEEEeccCc
Confidence 88899999999998654
No 160
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.89 E-value=3.4e-22 Score=186.45 Aligned_cols=220 Identities=24% Similarity=0.413 Sum_probs=177.3
Q ss_pred ecccCcEEEEEEecCC-CcEEEEEeCCCeEEEEeCCCCCCC------CccccccceeeEeeccCCCeEEEEEccC-CCEE
Q 004214 324 TGHMGAVGAVAFSKKL-QNFLVSGSSDHTIKVWSFDGLSDD------AEQPMNLKAKAVVAAHGKDINSLAVAPN-DSLV 395 (768)
Q Consensus 324 ~~~~~~v~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~------~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l 395 (768)
.+|.+.+..+...+-+ ..+.++-+..|.|.+|++...-.. ........+...+.+|...-.+++|||- ...+
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L 227 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL 227 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence 3577777777777664 345667788999999998753111 1112345677788899999999999992 3347
Q ss_pred EEEeCCCcEEEEeCCCCce---EEEEeccCCCeEEEEEccC-CCEEEEeeCCCcEEEEeCCCC---ceeEEeecCCCcEE
Q 004214 396 CTGSQDRTACVWRLPDLVS---VVTFRGHKRGIWSVEFSPV-DQVVITASGDKTIKIWSISDG---SCLKTFEGHTSSVL 468 (768)
Q Consensus 396 ~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~v~~v~~s~~-~~~l~t~~~d~~i~iwd~~~~---~~~~~~~~~~~~v~ 468 (768)
++|..-+.|++|...++.- ...+.+|+..|..++|||. ...|++|+-||+|+|||++.+ .++.+ +.|.+.|+
T Consensus 228 lsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDVN 306 (440)
T KOG0302|consen 228 LSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDVN 306 (440)
T ss_pred ccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-eccCCcee
Confidence 8888888999999887642 2346679999999999996 468999999999999999988 45554 78999999
Q ss_pred EEEEEeCCCEEEEEeCCCcEEEEECCC---CeEEEEeccCCCcEEEEEEcCC-CCEEEEEeCCCcEEEEEcCCHHHHHHH
Q 004214 469 RASFLTRGAQIVSCGADGLVKLWTVRT---GECIATYDKHEDKIWALAVGKK-TEMFATGGSDALVNLWHDSTAAEREEA 544 (768)
Q Consensus 469 ~~~~s~~~~~l~s~~~dg~i~iwd~~~---~~~~~~~~~~~~~v~~l~~s~~-~~~l~s~~~dg~v~vw~~~~~~~~~~~ 544 (768)
.+.|+.+-.+|++|+.||+++|||+++ ++++.+++.|..+|+++.|+|. ...|+++|.|..|.+||+..+...++.
T Consensus 307 VISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~ 386 (440)
T KOG0302|consen 307 VISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEI 386 (440)
T ss_pred eEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhh
Confidence 999999888999999999999999875 6789999999999999999995 567889999999999999876554433
No 161
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.88 E-value=5.3e-21 Score=174.92 Aligned_cols=234 Identities=17% Similarity=0.286 Sum_probs=182.8
Q ss_pred CEEEEEEeCCCeEEEEeCCCceEEEeeec--ccC---cEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccc
Q 004214 297 KILIVTGSKDNSVRLWDSESRCCVGVGTG--HMG---AVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLK 371 (768)
Q Consensus 297 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~---~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 371 (768)
..++++.+.+.-|++||.-+|+....+.+ |.. ...+++|+|||. .|+ ++....|++||+.........- ..
T Consensus 123 t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGe-qlf-aGykrcirvFdt~RpGr~c~vy--~t 198 (406)
T KOG2919|consen 123 TNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGE-QLF-AGYKRCIRVFDTSRPGRDCPVY--TT 198 (406)
T ss_pred cceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCC-eEe-ecccceEEEeeccCCCCCCcch--hh
Confidence 34588888899999999999888777654 333 346899999988 344 5677899999995432211100 00
Q ss_pred eeeEeeccCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeC-CCcEEEE
Q 004214 372 AKAVVAAHGKDINSLAVAP-NDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASG-DKTIKIW 449 (768)
Q Consensus 372 ~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~-d~~i~iw 449 (768)
...-..+..+-|.+++|+| +.+.+++|+....+-||.-....++..+-+|.+.|+.++|.++|+.|++|+. |-.|..|
T Consensus 199 ~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~W 278 (406)
T KOG2919|consen 199 VTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCW 278 (406)
T ss_pred hhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEE
Confidence 0111223456789999999 5569999999999999999999999999999999999999999999999875 6789999
Q ss_pred eCCC-CceeEEeecCCC-cEEEEEE--EeCCCEEEEEeCCCcEEEEECCC-CeEEEEeccCCCcEEEEEEcCCCCEEEEE
Q 004214 450 SISD-GSCLKTFEGHTS-SVLRASF--LTRGAQIVSCGADGLVKLWTVRT-GECIATYDKHEDKIWALAVGKKTEMFATG 524 (768)
Q Consensus 450 d~~~-~~~~~~~~~~~~-~v~~~~~--s~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~l~~s~~~~~l~s~ 524 (768)
|++. +.++..+..|.. .-.++.| .|+|++|++|+.||.|++||++. |..+..+..|...++.++++|--..++++
T Consensus 279 DiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilats 358 (406)
T KOG2919|consen 279 DIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATS 358 (406)
T ss_pred eehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeec
Confidence 9986 467778887776 4455655 57899999999999999999998 78788888899999999999998888888
Q ss_pred eCCCcEEEEEcCC
Q 004214 525 GSDALVNLWHDST 537 (768)
Q Consensus 525 ~~dg~v~vw~~~~ 537 (768)
+.. ++|...+
T Consensus 359 sGq---r~f~~~~ 368 (406)
T KOG2919|consen 359 SGQ---RIFKYPK 368 (406)
T ss_pred cCc---eeecCCC
Confidence 755 4554443
No 162
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.88 E-value=3.5e-21 Score=185.66 Aligned_cols=293 Identities=14% Similarity=0.251 Sum_probs=218.4
Q ss_pred eEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEE--eCCCcEEEEECCCc--eeeeeeeC
Q 004214 205 LLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVA--TNIEQVQVYDLSSM--SCSYVLAG 280 (768)
Q Consensus 205 l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~--~~~~~i~i~d~~~~--~~~~~~~~ 280 (768)
+.+++....+.+|+........... .......+.+++|...+. |+++ +.|..+++|.-... .....-..
T Consensus 5 l~~aS~gd~~kl~D~s~~~~~~~~~-----~~t~~pg~~s~~w~~~n~--lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~ 77 (673)
T KOG4378|consen 5 LHVASTGDKTKLSDFSDLETKSEYV-----HQTAEPGDFSFNWQRRNF--LVVASMAGDKVMRIKEKDGKTPEVPRVRKL 77 (673)
T ss_pred eeeeccCCceEEeecccccCccccc-----cCCCCCcceeeeccccce--EEEeecCCceeEEEecccCCCCccceeecc
Confidence 5666777788999887654221111 011122377888875443 5544 44667788864432 22222222
Q ss_pred CccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCC
Q 004214 281 HSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGL 360 (768)
Q Consensus 281 ~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 360 (768)
..+.-.|++ ..+.. .++++|+..+.|+|||++...+.+.+++|...|+++.++.... ++++++..|.|.+..+...
T Consensus 78 ~gd~~~Cv~--~~s~S-~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~De-yiAsvs~gGdiiih~~~t~ 153 (673)
T KOG4378|consen 78 TGDNAFCVA--CASQS-LYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDE-YIASVSDGGDIIIHGTKTK 153 (673)
T ss_pred ccchHHHHh--hhhcc-eeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcc-eeEEeccCCcEEEEecccC
Confidence 222444554 22333 4599999999999999998888899999999999999998744 8999999999999998754
Q ss_pred CCCCccccccceeeEeeccCCCeEEEEEccCCC-EEEEEeCCCcEEEEeCCCCceEEEE-eccCCCeEEEEEccCC-CEE
Q 004214 361 SDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDS-LVCTGSQDRTACVWRLPDLVSVVTF-RGHKRGIWSVEFSPVD-QVV 437 (768)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~v~~v~~s~~~-~~l 437 (768)
.. ........+..|+-+.|+|..+ +|.+++.+|.|.+||+....++..+ ..|..+...++|+|.. .+|
T Consensus 154 ~~---------tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~ 224 (673)
T KOG4378|consen 154 QK---------TTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALL 224 (673)
T ss_pred cc---------ccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceE
Confidence 32 1111122345567899999654 5678899999999999887776654 5699999999999965 678
Q ss_pred EEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCC-CeEEEEeccCCCcEEEEEEcC
Q 004214 438 ITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRT-GECIATYDKHEDKIWALAVGK 516 (768)
Q Consensus 438 ~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~l~~s~ 516 (768)
++.+.|..|.+||.........+. ...+...++|+++|.+|+.|...|.|..||++. ..++.++..|...|++++|-|
T Consensus 225 vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~ 303 (673)
T KOG4378|consen 225 VSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQP 303 (673)
T ss_pred EEecccceEEEeecccccccceee-ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeee
Confidence 889999999999999877777665 667889999999999999999999999999985 468999999999999999977
Q ss_pred CC
Q 004214 517 KT 518 (768)
Q Consensus 517 ~~ 518 (768)
..
T Consensus 304 s~ 305 (673)
T KOG4378|consen 304 SP 305 (673)
T ss_pred cc
Confidence 64
No 163
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.88 E-value=5.4e-18 Score=183.13 Aligned_cols=352 Identities=33% Similarity=0.576 Sum_probs=267.9
Q ss_pred EEEeecCCCcEEEEECCCCE-EEEEEEcCCC-cEEEEEE-eeCCCccEEEE-EeCCCcEEEEECCC-CeeEEEecCccce
Q 004214 2 FALLEGADRKVLVWDVDGGF-CTHYFKGHKG-VVSSILF-HPDTDKSLLFS-GSDDATVRVWDLLA-KKCVATLDKHFSR 76 (768)
Q Consensus 2 ~latg~~dg~i~vwd~~~~~-~~~~l~gh~~-~V~~l~~-spd~~~~~l~s-g~~dg~I~iWd~~~-~~~~~~l~~h~~~ 76 (768)
.++.++.|+.+.+|+...+. .+..+.++.. .+..+.+ ++++.. +++. +..|+.+.+||... ......+..|...
T Consensus 79 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 157 (466)
T COG2319 79 LLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNS-ILLASSSLDGTVKLWDLSTPGKLIRTLEGHSES 157 (466)
T ss_pred EEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcce-EEeccCCCCccEEEEEecCCCeEEEEEecCccc
Confidence 45677789999999999887 7788887554 8888888 777663 2444 45599999999988 8888999999999
Q ss_pred eEEEEEcCCCCEEEEEeC-CCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEE
Q 004214 77 VTSMAITSDGSTLISAGR-DKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFIT 155 (768)
Q Consensus 77 V~~l~fs~d~~~L~s~~~-dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (768)
|..++|+|++.++++++. |+.+++|+...+..+..
T Consensus 158 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------- 193 (466)
T COG2319 158 VTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLST-------------------------------------------- 193 (466)
T ss_pred EEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEe--------------------------------------------
Confidence 999999999999998886 99999999876332211
Q ss_pred eeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeee
Q 004214 156 VGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRL 235 (768)
Q Consensus 156 ~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~ 235 (768)
+
T Consensus 194 -------------------------------------------------------------------------------~ 194 (466)
T COG2319 194 -------------------------------------------------------------------------------L 194 (466)
T ss_pred -------------------------------------------------------------------------------e
Confidence 1
Q ss_pred cccCCceeEEEEecCCCC-EEEEEeCCCcEEEEECCCceeee-eeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEe
Q 004214 236 VGYNEEILDLKFLGEEEQ-YLAVATNIEQVQVYDLSSMSCSY-VLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWD 313 (768)
Q Consensus 236 ~~~~~~i~~~~~~~~~~~-~l~~~~~~~~i~i~d~~~~~~~~-~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd 313 (768)
.+|...+.+++|. +++. .++.++.++.+++||...+.... .+.+|.... ... +.+.+. ++++++.|+.+++|+
T Consensus 195 ~~~~~~v~~~~~~-~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~--~~~~~~-~~~~~~~d~~~~~~~ 269 (466)
T COG2319 195 AGHTDPVSSLAFS-PDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSS--FSPDGS-LLASGSSDGTIRLWD 269 (466)
T ss_pred ccCCCceEEEEEc-CCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEe--ECCCCC-EEEEecCCCcEEEee
Confidence 1245567777777 4444 44555889999999988777777 688888774 322 556664 478999999999999
Q ss_pred CCCceE-EEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeE--eeccCCCeEEEEEcc
Q 004214 314 SESRCC-VGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAV--VAAHGKDINSLAVAP 390 (768)
Q Consensus 314 ~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~s~ 390 (768)
...... ...+.+|...+.++.|.|++. .+++++.|+.+.+|+..... .... ...|...+..+.+.+
T Consensus 270 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~ 338 (466)
T COG2319 270 LRSSSSLLRTLSGHSSSVLSVAFSPDGK-LLASGSSDGTVRLWDLETGK----------LLSSLTLKGHEGPVSSLSFSP 338 (466)
T ss_pred ecCCCcEEEEEecCCccEEEEEECCCCC-EEEEeeCCCcEEEEEcCCCc----------eEEEeeecccCCceEEEEECC
Confidence 986654 444467899999999999756 56668888999999877432 1111 246777789999943
Q ss_pred CCCEEEEE-eCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEE-eeCCCcEEEEeCCCCceeEEeecCCCcEE
Q 004214 391 NDSLVCTG-SQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVIT-ASGDKTIKIWSISDGSCLKTFEGHTSSVL 468 (768)
Q Consensus 391 ~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t-~~~d~~i~iwd~~~~~~~~~~~~~~~~v~ 468 (768)
++..++.+ ..|+.+.+|+............ ...+..+.+++ ...+.. +..++.+.+|+.........+..+...+.
T Consensus 339 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (466)
T COG2319 339 DGSLLVSGGSDDGTIRLWDLRTGKPLKTLEG-HSNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVT 416 (466)
T ss_pred CCCEEEEeecCCCcEEeeecCCCceeEEecC-CceEEEEEECC-CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEE
Confidence 43555555 6889999999988773333322 22288999999 544444 68899999999998888877775557888
Q ss_pred EEEEEeCCCEEEEEeCCCcEEEEECCC
Q 004214 469 RASFLTRGAQIVSCGADGLVKLWTVRT 495 (768)
Q Consensus 469 ~~~~s~~~~~l~s~~~dg~i~iwd~~~ 495 (768)
...+++++..+++++.++.+++|+..+
T Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 417 SLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred EEEECCCCcEEEEecCCCcEEEEeccC
Confidence 999999999999999999999999988
No 164
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=2.9e-21 Score=184.39 Aligned_cols=239 Identities=23% Similarity=0.378 Sum_probs=188.1
Q ss_pred CEEEEEEeCCCeEEEEeCCCce---EE------------------EeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEE
Q 004214 297 KILIVTGSKDNSVRLWDSESRC---CV------------------GVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVW 355 (768)
Q Consensus 297 ~~~l~~~~~dg~i~iwd~~~~~---~~------------------~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iw 355 (768)
++++|.|+.|..|.|||+.-.. +. ....+|+..|.+++|+..-+++|++||.|.+|++|
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW 271 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW 271 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence 3469999999999999975211 00 11236999999999999989999999999999999
Q ss_pred eCCCCCCCCccccccceeeEeeccCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCC
Q 004214 356 SFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVD 434 (768)
Q Consensus 356 d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~ 434 (768)
|+..+ ++..++..|.+.|.++.|+| ....|++|+.|++|.++|++........-...+.|..++|.|..
T Consensus 272 D~~~g----------~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~s 341 (463)
T KOG0270|consen 272 DVDTG----------KPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHS 341 (463)
T ss_pred EcCCC----------CcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCC
Confidence 99954 46667778999999999999 57899999999999999998533332222356789999999975
Q ss_pred -CEEEEeeCCCcEEEEeCCCC-ceeEEeecCCCcEEEEEEEeCC-CEEEEEeCCCcEEEEECCCCeE--EEEeccCCCcE
Q 004214 435 -QVVITASGDKTIKIWSISDG-SCLKTFEGHTSSVLRASFLTRG-AQIVSCGADGLVKLWTVRTGEC--IATYDKHEDKI 509 (768)
Q Consensus 435 -~~l~t~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~v 509 (768)
..++++..||+|+-+|++.. +++.++..|.++|.++++++.- .+|++++.|+.|++|++....+ +....-.-+..
T Consensus 342 e~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl 421 (463)
T KOG0270|consen 342 ENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRL 421 (463)
T ss_pred ceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccce
Confidence 56777889999999999875 9999999999999999998754 4789999999999999865433 22222122446
Q ss_pred EEEEEcCCCC-EEEEEeCCCcEEEEEcCCHHHHHHHH
Q 004214 510 WALAVGKKTE-MFATGGSDALVNLWHDSTAAEREEAF 545 (768)
Q Consensus 510 ~~l~~s~~~~-~l~s~~~dg~v~vw~~~~~~~~~~~~ 545 (768)
.|+++.|+-. .++.||..+.++||+..+.....+..
T Consensus 422 ~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~kaF 458 (463)
T KOG0270|consen 422 HCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVRKAF 458 (463)
T ss_pred eecccCCCcceEEEecCccceEEEeecccChhHHHhh
Confidence 6778888654 57778888899999998876655443
No 165
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.88 E-value=2e-21 Score=172.76 Aligned_cols=306 Identities=20% Similarity=0.326 Sum_probs=206.3
Q ss_pred EEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEec-CccceeEEEEEcCCCCEEEEEeCCCeEEE
Q 004214 22 CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLD-KHFSRVTSMAITSDGSTLISAGRDKVVNL 100 (768)
Q Consensus 22 ~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~-~h~~~V~~l~fs~d~~~L~s~~~dg~i~v 100 (768)
.+..|++|.+.|+++.|-.+++ |.+|..-|.|++|++.+.+.+..++ .|...|+.+.-.|+ ..|.+-++|+.+.+
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~r---L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~l 81 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANER---LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLIL 81 (323)
T ss_pred CeeEeccccchheehhhccchh---hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEE
Confidence 3567889999999999988755 9999999999999999999998888 56779999999987 57899999999999
Q ss_pred EECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCce
Q 004214 101 WDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDV 180 (768)
Q Consensus 101 Wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~ 180 (768)
|++..+..+..-. -.++.+.|.+.
T Consensus 82 w~ia~s~~i~i~S--i~~nslgFCrf------------------------------------------------------ 105 (323)
T KOG0322|consen 82 WTIAYSAFISIHS--IVVNSLGFCRF------------------------------------------------------ 105 (323)
T ss_pred EEccCcceEEEee--eeccccccccc------------------------------------------------------
Confidence 9987643221110 00111111110
Q ss_pred eecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeC
Q 004214 181 TISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATN 260 (768)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~ 260 (768)
.+.+.+... -.+..|..... +....--++.
T Consensus 106 ----------------Sl~~~~k~~------eqll~yp~rgs----------------------------de~h~~D~g~ 135 (323)
T KOG0322|consen 106 ----------------SLVKKPKNS------EQLLEYPSRGS----------------------------DETHKQDGGD 135 (323)
T ss_pred ----------------eeccCCCcc------hhheecCCccc----------------------------chhhhhccCc
Confidence 000000000 00000000000 0000000000
Q ss_pred CCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceE----------EEeeecccCcE
Q 004214 261 IEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC----------VGVGTGHMGAV 330 (768)
Q Consensus 261 ~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----------~~~~~~~~~~v 330 (768)
.-++++-|-. -.+..+.+.|..+-+......++++|-.+|.+.+||+.++.. ......|..+|
T Consensus 136 ~tqv~i~dd~-------~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpv 208 (323)
T KOG0322|consen 136 TTQVQIADDS-------ERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPV 208 (323)
T ss_pred cceeEccCch-------hccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcc
Confidence 0111111110 112334455554333334455688899999999999998733 33345789999
Q ss_pred EEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 004214 331 GAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLP 410 (768)
Q Consensus 331 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~ 410 (768)
.++.+.+.-. .=++|+.+..+..|++..... .........-....|..+.+-||++.+|+++.|+.|++|..+
T Consensus 209 lsldyas~~~-rGisgga~dkl~~~Sl~~s~g------slq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswr 281 (323)
T KOG0322|consen 209 LSLDYASSCD-RGISGGADDKLVMYSLNHSTG------SLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWR 281 (323)
T ss_pred eeeeechhhc-CCcCCCccccceeeeeccccC------cccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEec
Confidence 9999987533 457788888899998874321 112222223344568889999999999999999999999999
Q ss_pred CCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeC
Q 004214 411 DLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSI 451 (768)
Q Consensus 411 ~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~ 451 (768)
++.++..++-|...|.+++|+|+..++|+++.|++|.+|++
T Consensus 282 tl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 282 TLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred cCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 99999999999999999999999999999999999999986
No 166
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=2e-21 Score=206.96 Aligned_cols=249 Identities=21% Similarity=0.344 Sum_probs=202.7
Q ss_pred cceEEEeeeeecCCC-EEEEEEeCCCeEEEEeCCCc------eEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEE
Q 004214 283 EIVLCLDTCALSSGK-ILIVTGSKDNSVRLWDSESR------CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVW 355 (768)
Q Consensus 283 ~~v~~l~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iw 355 (768)
.....++|+.+.++. -+|+.|..||.|.+||...- ..+.....|.+.|..+.|++...+++++|+.||.|.||
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iW 144 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIW 144 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEe
Confidence 445667654443331 25899999999999997652 34556778999999999999988899999999999999
Q ss_pred eCCCCCCCCccccccceeeEeeccCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCceEEEEeccCC--CeEEEEEcc
Q 004214 356 SFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKR--GIWSVEFSP 432 (768)
Q Consensus 356 d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~v~~v~~s~ 432 (768)
|+.......... .......|.+++|+. ....|++++.+|.+.|||++..+++..+..+.. .+..++|+|
T Consensus 145 Dlnn~~tP~~~~--------~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP 216 (1049)
T KOG0307|consen 145 DLNKPETPFTPG--------SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHP 216 (1049)
T ss_pred ccCCcCCCCCCC--------CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCC
Confidence 998643221111 233457899999998 467889999999999999999988888776655 477899999
Q ss_pred CC-CEEEEeeCCC---cEEEEeCCCC-ceeEEeecCCCcEEEEEEEeCC-CEEEEEeCCCcEEEEECCCCeEEEEeccCC
Q 004214 433 VD-QVVITASGDK---TIKIWSISDG-SCLKTFEGHTSSVLRASFLTRG-AQIVSCGADGLVKLWTVRTGECIATYDKHE 506 (768)
Q Consensus 433 ~~-~~l~t~~~d~---~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 506 (768)
++ ..|++++.|. .|.+||++.. .+++++++|...|.++.|++.+ ++|++++.|+.|.+|+..+|+.+..+....
T Consensus 217 ~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~ 296 (1049)
T KOG0307|consen 217 DHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQG 296 (1049)
T ss_pred CCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCC
Confidence 86 4566666543 5999999865 5788899999999999999866 899999999999999999999999998888
Q ss_pred CcEEEEEEcCCCC-EEEEEeCCCcEEEEEcCCHH
Q 004214 507 DKIWALAVGKKTE-MFATGGSDALVNLWHDSTAA 539 (768)
Q Consensus 507 ~~v~~l~~s~~~~-~l~s~~~dg~v~vw~~~~~~ 539 (768)
+.+..+.|+|... .+++++-||.|.|+.+.+..
T Consensus 297 nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 297 NWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred cceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 8899999999766 78888999999999986543
No 167
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.86 E-value=4.4e-20 Score=184.26 Aligned_cols=274 Identities=22% Similarity=0.329 Sum_probs=217.3
Q ss_pred ceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEE
Q 004214 241 EILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCV 320 (768)
Q Consensus 241 ~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 320 (768)
.|.+++|-|++.++++.++ ..+.+||...|.....+.+|.+.|+|++ ++.+|+. +++|+.|..|.+|+..-.-.+
T Consensus 14 ci~d~afkPDGsqL~lAAg--~rlliyD~ndG~llqtLKgHKDtVycVA--ys~dGkr-FASG~aDK~VI~W~~klEG~L 88 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG--SRLLVYDTSDGTLLQPLKGHKDTVYCVA--YAKDGKR-FASGSADKSVIIWTSKLEGIL 88 (1081)
T ss_pred chheeEECCCCceEEEecC--CEEEEEeCCCcccccccccccceEEEEE--EccCCce-eccCCCceeEEEeccccccee
Confidence 7889999876666655554 5899999999999999999999999998 7777776 999999999999987643333
Q ss_pred EeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeC
Q 004214 321 GVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ 400 (768)
Q Consensus 321 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 400 (768)
. ..|...|.|+.|+|-.. .+++++-. ..-+|....... ........+.+++|..||.+++.|-.
T Consensus 89 k--YSH~D~IQCMsFNP~~h-~LasCsLs-dFglWS~~qK~V------------~K~kss~R~~~CsWtnDGqylalG~~ 152 (1081)
T KOG1538|consen 89 K--YSHNDAIQCMSFNPITH-QLASCSLS-DFGLWSPEQKSV------------SKHKSSSRIICCSWTNDGQYLALGMF 152 (1081)
T ss_pred e--eccCCeeeEeecCchHH-Hhhhcchh-hccccChhhhhH------------HhhhhheeEEEeeecCCCcEEEEecc
Confidence 2 36999999999999854 67777643 356786542210 01112356889999999999999999
Q ss_pred CCcEEEEeCCCCceEEEEe---ccCCCeEEEEEccCC-----CEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEE
Q 004214 401 DRTACVWRLPDLVSVVTFR---GHKRGIWSVEFSPVD-----QVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASF 472 (768)
Q Consensus 401 dg~i~i~d~~~~~~~~~~~---~~~~~v~~v~~s~~~-----~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 472 (768)
||+|.+-+- ++++...+. |...+|++++|+|.. ..+++.....++.+|.+ +|+.+..-+.-.-...|+.+
T Consensus 153 nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~L-sG~~Igk~r~L~FdP~CisY 230 (1081)
T KOG1538|consen 153 NGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQL-SGKQIGKDRALNFDPCCISY 230 (1081)
T ss_pred CceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEe-cceeecccccCCCCchhhee
Confidence 999999864 344333333 467899999999963 57888888888999887 56666544444455678999
Q ss_pred EeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCH
Q 004214 473 LTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTA 538 (768)
Q Consensus 473 s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~ 538 (768)
.++|.|++.|+.|+.+++|. +.|-.+.++......||.++..|++++++.|+.||+|.-|++...
T Consensus 231 f~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fS 295 (1081)
T KOG1538|consen 231 FTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIFS 295 (1081)
T ss_pred ccCCcEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHHh
Confidence 99999999999999999996 577888888778889999999999999999999999999987543
No 168
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.86 E-value=2.9e-19 Score=164.12 Aligned_cols=297 Identities=19% Similarity=0.310 Sum_probs=216.3
Q ss_pred cceeEEEEcc----CCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEec---CCCCEEEEEeCCCc
Q 004214 191 RGFTAATVLP----SNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLG---EEEQYLAVATNIEQ 263 (768)
Q Consensus 191 ~~~~~~~~~~----~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~l~~~~~~~~ 263 (768)
..+..++|.+ +...+++....+.+.+|........ .+...-.-..+......++|.- ....++|+|+.-|.
T Consensus 39 ~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~i--r~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~Gv 116 (385)
T KOG1034|consen 39 KPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGI--RLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGV 116 (385)
T ss_pred CccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccce--eeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeE
Confidence 3444455442 2334555556677888887655311 1111111123566777788743 24678999999999
Q ss_pred EEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeee---cccCcEEEEEEecCCC
Q 004214 264 VQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGT---GHMGAVGAVAFSKKLQ 340 (768)
Q Consensus 264 i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~ 340 (768)
|+|.|..++++...+.+|...|..+. +.|....+++++++|..|++|++++..++..+. +|.+.|.++.|+++|.
T Consensus 117 IrVid~~~~~~~~~~~ghG~sINeik--~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd 194 (385)
T KOG1034|consen 117 IRVIDVVSGQCSKNYRGHGGSINEIK--FHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGD 194 (385)
T ss_pred EEEEecchhhhccceeccCccchhhh--cCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCC
Confidence 99999999999999999999999998 778888889999999999999999999998875 6999999999999987
Q ss_pred cEEEEEeCCCeEEEEeCCCCCC--C-----------Ccccc-----ccceeeEeeccCCCeEEEEEccCCCEEEEEeCCC
Q 004214 341 NFLVSGSSDHTIKVWSFDGLSD--D-----------AEQPM-----NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDR 402 (768)
Q Consensus 341 ~~l~s~~~dg~i~iwd~~~~~~--~-----------~~~~~-----~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg 402 (768)
++++++.|.++++|+++...- . ...++ ......+...|...|-|+.|- |.++++-+-++
T Consensus 195 -~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscen 271 (385)
T KOG1034|consen 195 -RIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCEN 271 (385)
T ss_pred -eeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccCc
Confidence 899999999999999983210 0 00000 011111334577777777775 57899989899
Q ss_pred cEEEEeCCC-Cc-------------eEEEEeccCCCeEEEE--EccCCCEEEEeeCCCcEEEEeCCCCcee--EEee--c
Q 004214 403 TACVWRLPD-LV-------------SVVTFRGHKRGIWSVE--FSPVDQVVITASGDKTIKIWSISDGSCL--KTFE--G 462 (768)
Q Consensus 403 ~i~i~d~~~-~~-------------~~~~~~~~~~~v~~v~--~s~~~~~l~t~~~d~~i~iwd~~~~~~~--~~~~--~ 462 (768)
.|..|.... .+ .+..+.-....|+-+. |.|-++.||.|...|.|.+||++...+. .++. .
T Consensus 272 aI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~ 351 (385)
T KOG1034|consen 272 AIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSK 351 (385)
T ss_pred eEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEecc
Confidence 999998721 11 2233333445566655 4566899999999999999999887653 2222 2
Q ss_pred CCCcEEEEEEEeCCCEEEEEeCCCcEEEEECC
Q 004214 463 HTSSVLRASFLTRGAQIVSCGADGLVKLWTVR 494 (768)
Q Consensus 463 ~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 494 (768)
....|...+|+.||..|+..+.|++|.-||..
T Consensus 352 ~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 352 SGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred ccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 24578999999999999999999999999853
No 169
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.85 E-value=3.4e-19 Score=168.47 Aligned_cols=326 Identities=22% Similarity=0.292 Sum_probs=215.6
Q ss_pred CCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCC---------eeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEE
Q 004214 30 KGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK---------KCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNL 100 (768)
Q Consensus 30 ~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~---------~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~v 100 (768)
..+|..+.|.+++. ..+|||+.|..|+||-+..+ +.+..|..|...|+++.|+|+|..|+||+.+|.|.+
T Consensus 13 ~~pv~s~dfq~n~~-~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~l 91 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSL-NKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFL 91 (434)
T ss_pred CCceEEEEeccCcc-cceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEE
Confidence 45899999998765 24999999999999987532 235678889999999999999999999999999999
Q ss_pred EECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCce
Q 004214 101 WDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDV 180 (768)
Q Consensus 101 Wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~ 180 (768)
|-...-. +.+.++. .
T Consensus 92 Wk~~~~~--------------------------------------------------------~~~~d~e-~-------- 106 (434)
T KOG1009|consen 92 WKQGDVR--------------------------------------------------------IFDADTE-A-------- 106 (434)
T ss_pred EEecCcC--------------------------------------------------------Cccccch-h--------
Confidence 9654300 0000000 0
Q ss_pred eecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeC
Q 004214 181 TISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATN 260 (768)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~ 260 (768)
.
T Consensus 107 -----------------------------------------------~-------------------------------- 107 (434)
T KOG1009|consen 107 -----------------------------------------------D-------------------------------- 107 (434)
T ss_pred -----------------------------------------------h--------------------------------
Confidence 0
Q ss_pred CCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCC
Q 004214 261 IEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQ 340 (768)
Q Consensus 261 ~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 340 (768)
-+-+.......+.+|...++.++ +.+++.. +++|+.|+.+++||+..|.....+..|...+..++|.|-++
T Consensus 108 ------~~ke~w~v~k~lr~h~~diydL~--Ws~d~~~-l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~q 178 (434)
T KOG1009|consen 108 ------LNKEKWVVKKVLRGHRDDIYDLA--WSPDSNF-LVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQ 178 (434)
T ss_pred ------hCccceEEEEEecccccchhhhh--ccCCCce-eeeeeccceEEEEEeccceeEeeccccccccceeecchhhh
Confidence 00011122235566777777775 5566654 99999999999999999999999999999999999999866
Q ss_pred cEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCC-CeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEe
Q 004214 341 NFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGK-DINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFR 419 (768)
Q Consensus 341 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 419 (768)
++++-+.|...+.+.+... .....+.. ...+-++.+. .....++|.=++++
T Consensus 179 -yv~s~s~dr~~~~~~~~~~-------------~~~~~~~~~~m~~~~~~~~--------e~~s~rLfhDeTlk------ 230 (434)
T KOG1009|consen 179 -YVASKSSDRHPEGFSAKLK-------------QVIKRHGLDIMPAKAFNER--------EGKSTRLFHDETLK------ 230 (434)
T ss_pred -hhhhhccCcccceeeeeee-------------eeeeeeeeeEeeecccCCC--------CcceeeeeecCchh------
Confidence 7888888886666655421 11111110 0011111111 11122233222211
Q ss_pred ccCCCeEEEEEccCCCEEEEeeC----CC-----cEEEEeCCC-CceeEEeecCCCcEEEEEEEe---------------
Q 004214 420 GHKRGIWSVEFSPVDQVVITASG----DK-----TIKIWSISD-GSCLKTFEGHTSSVLRASFLT--------------- 474 (768)
Q Consensus 420 ~~~~~v~~v~~s~~~~~l~t~~~----d~-----~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~--------------- 474 (768)
.-...++|+|+|.+|++.+. .+ ..++|+-.. .++...+.+...+...+.|+|
T Consensus 231 ---sFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~ 307 (434)
T KOG1009|consen 231 ---SFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLF 307 (434)
T ss_pred ---hhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEecccccccccc
Confidence 11345677888887776542 12 224444322 234555555556666666654
Q ss_pred ---CCCEEEEEeCCCcEEEEECCCCeEEEEec-cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCHHHH
Q 004214 475 ---RGAQIVSCGADGLVKLWTVRTGECIATYD-KHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAER 541 (768)
Q Consensus 475 ---~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~~~~ 541 (768)
.+-.++.++. ..|+|||.++.+++.... -|-..|+.++|++||.+|+..+.||.+.+-.+++.+.-
T Consensus 308 ~lpyrlvfaiAt~-~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 308 VLPYRLVFAIATK-NSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWELG 377 (434)
T ss_pred ccccceEEEEeec-ceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchhcc
Confidence 2233455554 569999999988777654 48899999999999999999999999988887765543
No 170
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=1.4e-19 Score=167.30 Aligned_cols=272 Identities=19% Similarity=0.287 Sum_probs=197.8
Q ss_pred CEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecC-CCEEEEEEeCCCeEEEEeCCCceEEEe--eeccc-C
Q 004214 253 QYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSS-GKILIVTGSKDNSVRLWDSESRCCVGV--GTGHM-G 328 (768)
Q Consensus 253 ~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~-~ 328 (768)
..+|++...|.|++||..+++.+..+.++...+..+. +... ....+.+++.||+|++||+++...... +..+. .
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vr--f~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~ 118 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVR--FISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGT 118 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceE--EecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCC
Confidence 5789999999999999999999999999998888887 4443 455699999999999999987655443 33444 4
Q ss_pred cEEEEEEecCCCcEEEEEe----CCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEcc-CCCEEEEEeCCCc
Q 004214 329 AVGAVAFSKKLQNFLVSGS----SDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQDRT 403 (768)
Q Consensus 329 ~v~~~~~~~~~~~~l~s~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~ 403 (768)
+..+++.+-. .+++++|+ .+-.|.+||++..+. ........|.+.|+++.|+| +.++|++|+.||.
T Consensus 119 ~f~~ld~nck-~~ii~~GtE~~~s~A~v~lwDvR~~qq--------~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGL 189 (376)
T KOG1188|consen 119 PFICLDLNCK-KNIIACGTELTRSDASVVLWDVRSEQQ--------LLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGL 189 (376)
T ss_pred cceEeeccCc-CCeEEeccccccCceEEEEEEeccccc--------hhhhhhhhccCcceeEEecCCCCCeEEeecccce
Confidence 5666666545 33677765 367899999986421 13445577999999999999 6789999999999
Q ss_pred EEEEeCCCCc---eEEEEeccCCCeEEEEEccCC-CEEEEeeCCCcEEEEeCCCCceeEEeecCC------------CcE
Q 004214 404 ACVWRLPDLV---SVVTFRGHKRGIWSVEFSPVD-QVVITASGDKTIKIWSISDGSCLKTFEGHT------------SSV 467 (768)
Q Consensus 404 i~i~d~~~~~---~~~~~~~~~~~v~~v~~s~~~-~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~------------~~v 467 (768)
|.+||+.... .+...-.|...|.++.|..++ +.|.+-+...+..+|+++.+.+...++... ..+
T Consensus 190 vnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~ 269 (376)
T KOG1188|consen 190 VNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYV 269 (376)
T ss_pred EEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhhe
Confidence 9999986542 222233477889999999877 457888888999999999998776665321 111
Q ss_pred EEEEEEeCCCEEEEEeC-CCcEEEEECC---CC---eEEEEecc-CCCcEEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 004214 468 LRASFLTRGAQIVSCGA-DGLVKLWTVR---TG---ECIATYDK-HEDKIWALAVGKKTEMFATGGSDALVNLWHD 535 (768)
Q Consensus 468 ~~~~~s~~~~~l~s~~~-dg~i~iwd~~---~~---~~~~~~~~-~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~ 535 (768)
.......++..++.++. -|...++-+. ++ +.+..+.+ |..-|.++.|...+.++.|||+||.+.+|..
T Consensus 270 I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 270 INEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred eecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 11111123344444444 5555555432 33 34455555 6667888999889999999999999999985
No 171
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=3.3e-19 Score=190.32 Aligned_cols=247 Identities=18% Similarity=0.326 Sum_probs=198.5
Q ss_pred CCceeEEEEecCCCC---EEEEEeCCCcEEEEECCCc------eeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeE
Q 004214 239 NEEILDLKFLGEEEQ---YLAVATNIEQVQVYDLSSM------SCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSV 309 (768)
Q Consensus 239 ~~~i~~~~~~~~~~~---~l~~~~~~~~i~i~d~~~~------~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i 309 (768)
......++|.+.... +++.|..||.|.+||.... ..+.....|.+.|..++ +.+..+.++++|+.||.|
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLD--fN~~q~nlLASGa~~geI 141 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLD--FNPFQGNLLASGADDGEI 141 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeee--ccccCCceeeccCCCCcE
Confidence 335567777654443 6899999999999998752 23456688999999999 888888789999999999
Q ss_pred EEEeCCCceEEEee--ecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeecc--CCCeEE
Q 004214 310 RLWDSESRCCVGVG--TGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAH--GKDINS 385 (768)
Q Consensus 310 ~iwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~ 385 (768)
.|||+..-+.-..+ ....+.|.+++|+..-.++|++++.+|.+.|||++.... ...+..+ ...+..
T Consensus 142 ~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~p----------ii~ls~~~~~~~~S~ 211 (1049)
T KOG0307|consen 142 LIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKP----------IIKLSDTPGRMHCSV 211 (1049)
T ss_pred EEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCc----------ccccccCCCccceee
Confidence 99999874433332 225678999999998888999999999999999985421 1111112 245789
Q ss_pred EEEccCC-CEEEEEeCCC---cEEEEeCCCC-ceEEEEeccCCCeEEEEEccCC-CEEEEeeCCCcEEEEeCCCCceeEE
Q 004214 386 LAVAPND-SLVCTGSQDR---TACVWRLPDL-VSVVTFRGHKRGIWSVEFSPVD-QVVITASGDKTIKIWSISDGSCLKT 459 (768)
Q Consensus 386 ~~~s~~~-~~l~~~~~dg---~i~i~d~~~~-~~~~~~~~~~~~v~~v~~s~~~-~~l~t~~~d~~i~iwd~~~~~~~~~ 459 (768)
++|+|++ ..+++++.|. .|.+||++.. .++..+.+|..+|.++.|++.+ .+|++++.|+.|.+|+.++++.+..
T Consensus 212 l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~ 291 (1049)
T KOG0307|consen 212 LAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGE 291 (1049)
T ss_pred eeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeee
Confidence 9999965 4566666554 6999998754 5677788999999999999977 8999999999999999999999999
Q ss_pred eecCCCcEEEEEEEeCCC-EEEEEeCCCcEEEEECCCCe
Q 004214 460 FEGHTSSVLRASFLTRGA-QIVSCGADGLVKLWTVRTGE 497 (768)
Q Consensus 460 ~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~~ 497 (768)
+.....++..+.|+|... .+++++-||.|-||.+..+.
T Consensus 292 ~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 292 LPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred cCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 999889999999999766 77888899999999987654
No 172
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.83 E-value=6.9e-20 Score=180.37 Aligned_cols=259 Identities=19% Similarity=0.247 Sum_probs=196.7
Q ss_pred eeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCC--------ceEEEeeecccCcEEEEEEecCCCcEEEEEe
Q 004214 276 YVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES--------RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGS 347 (768)
Q Consensus 276 ~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~ 347 (768)
.++..|.+.+..+. +.+... .|++++.||.+.+|+++. -+++.++.+|.++|.|+++.+++. .+++|+
T Consensus 288 ~tl~s~~d~ir~l~--~~~sep-~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~-~~ysgg 363 (577)
T KOG0642|consen 288 FTLRSHDDCIRALA--FHPSEP-VLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGE-HCYSGG 363 (577)
T ss_pred eeeecchhhhhhhh--cCCCCC-eEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCce-EEEeec
Confidence 36667888888875 444444 499999999999999932 356788999999999999999966 799999
Q ss_pred CCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEecc--CCCe
Q 004214 348 SDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGH--KRGI 425 (768)
Q Consensus 348 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~v 425 (768)
.||+|+.|++..........-.......+.+|.+.|..+++|+....|++++.||+++.|+.....+ .++... .+.-
T Consensus 364 ~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~P 442 (577)
T KOG0642|consen 364 IDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYP 442 (577)
T ss_pred cCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCc
Confidence 9999999998843332222223345667789999999999999999999999999999999876655 333321 2234
Q ss_pred EEEEEccCC-CEEEEeeCCCcEEEEeCCCCceeEEeec-------CCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCe
Q 004214 426 WSVEFSPVD-QVVITASGDKTIKIWSISDGSCLKTFEG-------HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE 497 (768)
Q Consensus 426 ~~v~~s~~~-~~l~t~~~d~~i~iwd~~~~~~~~~~~~-------~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~ 497 (768)
.++++-... ...++...-+.--+++...+..+..+.. ....+..+.+.|.+.+.+++..|+.|+++|..+++
T Consensus 443 lsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~ 522 (577)
T KOG0642|consen 443 LSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGK 522 (577)
T ss_pred ceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccc
Confidence 556655433 2222222223333444444444444431 12456778899999999999999999999999999
Q ss_pred EEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCHH
Q 004214 498 CIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAA 539 (768)
Q Consensus 498 ~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~~ 539 (768)
++.....|...++++++.|+|.+|++++.||.+++|++....
T Consensus 523 ~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~ 564 (577)
T KOG0642|consen 523 ILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKT 564 (577)
T ss_pred cchheeeccceecceeecCCCceEEeecCCceeehhhccchh
Confidence 999999999999999999999999999999999999986543
No 173
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.83 E-value=9.7e-19 Score=157.72 Aligned_cols=274 Identities=25% Similarity=0.351 Sum_probs=201.3
Q ss_pred EEEEEeC----CCcEEEEECCCcee---eeeeeCCccceEEEeeeeecCCCEEEEEEeCC-------CeEEEEeCCCc--
Q 004214 254 YLAVATN----IEQVQVYDLSSMSC---SYVLAGHSEIVLCLDTCALSSGKILIVTGSKD-------NSVRLWDSESR-- 317 (768)
Q Consensus 254 ~l~~~~~----~~~i~i~d~~~~~~---~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~d-------g~i~iwd~~~~-- 317 (768)
.+++|++ +++|.+.++..... ...+..|.+.|..++ ..|.+..+|+++..+ -.+.||.+...
T Consensus 28 cFlvgTnslK~dNqVhll~~d~e~s~l~skvf~h~agEvw~la--s~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~ 105 (370)
T KOG1007|consen 28 CFLVGTNSLKEDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLA--SSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLG 105 (370)
T ss_pred EEEEeccccCCcceeEEEEecCccchhhhhhhhcCCcceehhh--cCCCCCceEEEEEeccCCCcceeeEEEEecccccC
Confidence 4455554 56777766654432 235667888999998 667777778877553 24678987532
Q ss_pred -------eEEEeee-cccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEc
Q 004214 318 -------CCVGVGT-GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVA 389 (768)
Q Consensus 318 -------~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 389 (768)
+++..+. .+-+.|.|+.|.|++.. +++-. |..|.+|++.......... .......+....++-+|+
T Consensus 106 ~S~~~tlE~v~~Ldteavg~i~cvew~Pns~k-lasm~-dn~i~l~~l~ess~~vaev----~ss~s~e~~~~ftsg~Ws 179 (370)
T KOG1007|consen 106 QSNSSTLECVASLDTEAVGKINCVEWEPNSDK-LASMD-DNNIVLWSLDESSKIVAEV----LSSESAEMRHSFTSGAWS 179 (370)
T ss_pred ccccchhhHhhcCCHHHhCceeeEEEcCCCCe-eEEec-cCceEEEEcccCcchheee----cccccccccceecccccC
Confidence 2233333 45678999999998764 55444 8899999998764321110 111112256677889999
Q ss_pred c--CCCEEEEEeCCCcEEEEeCCCCceEEEEe-ccCCCeEEEEEccCCC-EEEEeeCCCcEEEEeCCC-CceeEEeecCC
Q 004214 390 P--NDSLVCTGSQDRTACVWRLPDLVSVVTFR-GHKRGIWSVEFSPVDQ-VVITASGDKTIKIWSISD-GSCLKTFEGHT 464 (768)
Q Consensus 390 ~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~v~~s~~~~-~l~t~~~d~~i~iwd~~~-~~~~~~~~~~~ 464 (768)
| +|+.+++. .|+++..||+++.+....+. .|...|..+.|+|+-+ +|++++.||.|+|||.+. ..++..+.+|.
T Consensus 180 pHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~Hs 258 (370)
T KOG1007|consen 180 PHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHS 258 (370)
T ss_pred CCCccceEEEe-CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCc
Confidence 9 77777774 57999999999987776665 5888999999999864 788899999999999876 46899999999
Q ss_pred CcEEEEEEEeC-CCEEEEEeCCCcEEEEECCCC-----------------------------eEEEEeccCCCcEEEEEE
Q 004214 465 SSVLRASFLTR-GAQIVSCGADGLVKLWTVRTG-----------------------------ECIATYDKHEDKIWALAV 514 (768)
Q Consensus 465 ~~v~~~~~s~~-~~~l~s~~~dg~i~iwd~~~~-----------------------------~~~~~~~~~~~~v~~l~~ 514 (768)
..|.++.|+|. .+++++|+.|..|.+|...+- -.+.++..|.+.|.+++|
T Consensus 259 HWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aW 338 (370)
T KOG1007|consen 259 HWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAW 338 (370)
T ss_pred eEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEee
Confidence 99999999985 457789999999999965310 134577889999999999
Q ss_pred cCCCCE-EEEEeCCCcEEEEEcC
Q 004214 515 GKKTEM-FATGGSDALVNLWHDS 536 (768)
Q Consensus 515 s~~~~~-l~s~~~dg~v~vw~~~ 536 (768)
|.-..+ +|+-+.||.+.|=++.
T Consensus 339 SsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 339 SSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred ccCCCeeEEEeccCceEEeecCC
Confidence 986655 6778999999886654
No 174
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.83 E-value=2e-18 Score=179.86 Aligned_cols=276 Identities=18% Similarity=0.234 Sum_probs=207.0
Q ss_pred CcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceE--EE----eeecccCcEEEEEE
Q 004214 262 EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC--VG----VGTGHMGAVGAVAF 335 (768)
Q Consensus 262 ~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~----~~~~~~~~v~~~~~ 335 (768)
+.+.+|++...........-...|.|+. +.+.+..+++.|..+|.|.+||+..+.. .. ....|..+++.+.|
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~--f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW 299 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLESPSEVTCLK--FCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVW 299 (555)
T ss_pred ceEEEEecCCCCCceEEEecCCceeEEE--eccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEE
Confidence 4799999988754444445567888988 6677777899999999999999987654 22 23368899999999
Q ss_pred ecCCC-cEEEEEeCCCeEEEEeCCCCCCCCcccccccee--eEeeccCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCC
Q 004214 336 SKKLQ-NFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAK--AVVAAHGKDINSLAVAP-NDSLVCTGSQDRTACVWRLPD 411 (768)
Q Consensus 336 ~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~ 411 (768)
..+-. .-+++++.||.|..|+++............... .........+++++|.| +...+++|+.+|.|.--+...
T Consensus 300 ~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g 379 (555)
T KOG1587|consen 300 LQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKG 379 (555)
T ss_pred eccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccC
Confidence 76422 238888889999999987654322111100000 11112335688999998 567899999999988744332
Q ss_pred C--------ceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCC-CCceeEEeecCCCcEEEEEEEeCCC-EEEE
Q 004214 412 L--------VSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSIS-DGSCLKTFEGHTSSVLRASFLTRGA-QIVS 481 (768)
Q Consensus 412 ~--------~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~-~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s 481 (768)
. +....+..|.++|.++.++|-+..++..+.|.+|+||... ...++..+..+...|++++|||-.. .+++
T Consensus 380 ~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~ 459 (555)
T KOG1587|consen 380 YTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFAT 459 (555)
T ss_pred CcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEE
Confidence 2 2233566789999999999988777666669999999988 7788888888888999999999764 6678
Q ss_pred EeCCCcEEEEECCC--CeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCHH
Q 004214 482 CGADGLVKLWTVRT--GECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAA 539 (768)
Q Consensus 482 ~~~dg~i~iwd~~~--~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~~ 539 (768)
+..||.|.+||+.. ..++.+...+....+.+.|++.|+.|++|...|.+.+|++...-
T Consensus 460 ~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~l 519 (555)
T KOG1587|consen 460 VDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSESL 519 (555)
T ss_pred EcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCchh
Confidence 88899999999864 35666665566667778899999999999999999999997543
No 175
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.82 E-value=4.3e-18 Score=156.05 Aligned_cols=277 Identities=18% Similarity=0.288 Sum_probs=193.4
Q ss_pred EEEEEEeeCCCccEEEEEeCCCcEEEEECCCC-------e-----eEEEecC-ccceeEEEEEc-------CCCCEEEEE
Q 004214 33 VSSILFHPDTDKSLLFSGSDDATVRVWDLLAK-------K-----CVATLDK-HFSRVTSMAIT-------SDGSTLISA 92 (768)
Q Consensus 33 V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~-------~-----~~~~l~~-h~~~V~~l~fs-------~d~~~L~s~ 92 (768)
...+.|+|||.. |++-+.|..+.+|++... . ...+++- ....|...+|- |+..++++.
T Consensus 52 ~kgckWSPDGSc--iL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~s 129 (406)
T KOG2919|consen 52 LKGCKWSPDGSC--ILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVS 129 (406)
T ss_pred hccceeCCCCce--EEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeec
Confidence 456789999998 999999999999998421 0 0111111 23356666664 678899999
Q ss_pred eCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCcee
Q 004214 93 GRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACL 172 (768)
Q Consensus 93 ~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~ 172 (768)
+.+.-|.+||.-+|+....+........+
T Consensus 130 sr~~PIh~wdaftG~lraSy~~ydh~de~--------------------------------------------------- 158 (406)
T KOG2919|consen 130 SRDQPIHLWDAFTGKLRASYRAYDHQDEY--------------------------------------------------- 158 (406)
T ss_pred cccCceeeeeccccccccchhhhhhHHhh---------------------------------------------------
Confidence 99999999999999877665433211000
Q ss_pred eeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCC
Q 004214 173 YEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEE 252 (768)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 252 (768)
. ...+++|++ ++
T Consensus 159 ------------------t-------------------------------------------------aAhsL~Fs~-DG 170 (406)
T KOG2919|consen 159 ------------------T-------------------------------------------------AAHSLQFSP-DG 170 (406)
T ss_pred ------------------h-------------------------------------------------hheeEEecC-CC
Confidence 0 112233332 22
Q ss_pred CEEEEEeCCCcEEEEEC-CCceeeee-------eeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeee
Q 004214 253 QYLAVATNIEQVQVYDL-SSMSCSYV-------LAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGT 324 (768)
Q Consensus 253 ~~l~~~~~~~~i~i~d~-~~~~~~~~-------~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 324 (768)
..|.+|.+ ..|++||+ +.|..... -.+..+.+.|++ ++|.+...++.|+....+-||.-..+.++..+.
T Consensus 171 eqlfaGyk-rcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a--~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llg 247 (406)
T KOG2919|consen 171 EQLFAGYK-RCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFA--FSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLG 247 (406)
T ss_pred CeEeeccc-ceEEEeeccCCCCCCcchhhhhcccccccceeeeee--ccCCCCcceeeecccceeeeEecCCCCceeeec
Confidence 23333322 45555555 22221111 123356677777 778777779999999999999999999999999
Q ss_pred cccCcEEEEEEecCCCcEEEEEe-CCCeEEEEeCCCCCCCCccccccceeeEeeccCC---CeEEEEEccCCCEEEEEeC
Q 004214 325 GHMGAVGAVAFSKKLQNFLVSGS-SDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGK---DINSLAVAPNDSLVCTGSQ 400 (768)
Q Consensus 325 ~~~~~v~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---~i~~~~~s~~~~~l~~~~~ 400 (768)
+|.+.|+.++|.++|.+ |++|+ .|-.|..||++... .+...+..|.. .-.-....|.+++|++|+.
T Consensus 248 gh~gGvThL~~~edGn~-lfsGaRk~dkIl~WDiR~~~---------~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~t 317 (406)
T KOG2919|consen 248 GHGGGVTHLQWCEDGNK-LFSGARKDDKILCWDIRYSR---------DPVYALERHVGDTNQRILFDLDPKGEILASGDT 317 (406)
T ss_pred ccCCCeeeEEeccCcCe-ecccccCCCeEEEEeehhcc---------chhhhhhhhccCccceEEEecCCCCceeeccCC
Confidence 99999999999999885 55554 58889999998532 12222333332 1123456789999999999
Q ss_pred CCcEEEEeCCC-CceEEEEeccCCCeEEEEEccCCCEEEEeeCC
Q 004214 401 DRTACVWRLPD-LVSVVTFRGHKRGIWSVEFSPVDQVVITASGD 443 (768)
Q Consensus 401 dg~i~i~d~~~-~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d 443 (768)
||.|++||+++ +..+..+..+...++.++++|--.++++++..
T Consensus 318 dG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 318 DGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred CccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence 99999999998 67788888899999999999998899998864
No 176
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.82 E-value=2.5e-19 Score=159.57 Aligned_cols=288 Identities=16% Similarity=0.223 Sum_probs=201.9
Q ss_pred cccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeee-CCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeC
Q 004214 236 VGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLA-GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDS 314 (768)
Q Consensus 236 ~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~-~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~ 314 (768)
.++.+.++++.|-. ..+|..|...|.|.+|++.+......+. .+...|+.+. ..+. +. +.+-+.|+.+.+|++
T Consensus 11 Rp~~~~v~s~~fqa--~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq--~~p~-d~-l~tqgRd~~L~lw~i 84 (323)
T KOG0322|consen 11 RPHSSSVTSVLFQA--NERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQ--SIPN-DS-LDTQGRDPLLILWTI 84 (323)
T ss_pred ccccchheehhhcc--chhhhcccccceEEEEEeecCccchhhhhhccceeecee--ecCC-cc-hhhcCCCceEEEEEc
Confidence 37788888888853 3469999999999999999998888887 5677888875 4443 44 889999999999999
Q ss_pred CCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCC-eEEEEeCCCCCCCCccc-cccc----eeeEeeccCCCeEEEEE
Q 004214 315 ESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDH-TIKVWSFDGLSDDAEQP-MNLK----AKAVVAAHGKDINSLAV 388 (768)
Q Consensus 315 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~-~~~~----~~~~~~~~~~~i~~~~~ 388 (768)
..+..+.. |.-.+.++.|.+-. +...+... ..-.++-+......... .... ......+..+.+.+..+
T Consensus 85 a~s~~i~i---~Si~~nslgFCrfS---l~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~ 158 (323)
T KOG0322|consen 85 AYSAFISI---HSIVVNSLGFCRFS---LVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDK 158 (323)
T ss_pred cCcceEEE---eeeeccccccccce---eccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeec
Confidence 87654433 44455555555431 22222211 11122211111000000 0000 00011123345555554
Q ss_pred cc-CC--CEEEEEeCCCcEEEEeCCCCce----------EEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCC-
Q 004214 389 AP-ND--SLVCTGSQDRTACVWRLPDLVS----------VVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG- 454 (768)
Q Consensus 389 s~-~~--~~l~~~~~dg~i~i~d~~~~~~----------~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~- 454 (768)
.. ++ -++++|-++|.+.+||+.++.. ......|..+|.++.|.+.-..=++|+.+..+..|++...
T Consensus 159 ~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~ 238 (323)
T KOG0322|consen 159 DHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHST 238 (323)
T ss_pred cccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeecccc
Confidence 33 22 3567788999999999998733 3344468999999999987666678888888999988643
Q ss_pred -ce--eEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEE
Q 004214 455 -SC--LKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVN 531 (768)
Q Consensus 455 -~~--~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~ 531 (768)
.+ ...+.-.+..|..+.+-||++.+++++.||.|+||+.++..++..+..|.+.|.+++|+|+.+.+|+++.|+.|.
T Consensus 239 gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rIS 318 (323)
T KOG0322|consen 239 GSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARIS 318 (323)
T ss_pred CcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEE
Confidence 22 122333445678899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEc
Q 004214 532 LWHD 535 (768)
Q Consensus 532 vw~~ 535 (768)
+|++
T Consensus 319 LWkL 322 (323)
T KOG0322|consen 319 LWKL 322 (323)
T ss_pred eeec
Confidence 9985
No 177
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.82 E-value=1e-19 Score=179.22 Aligned_cols=276 Identities=20% Similarity=0.317 Sum_probs=191.8
Q ss_pred EEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCC--------CeeEEEecCccceeEEEEEcCCCCEEEEEeCC
Q 004214 24 HYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLA--------KKCVATLDKHFSRVTSMAITSDGSTLISAGRD 95 (768)
Q Consensus 24 ~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~--------~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~d 95 (768)
.++..|...|++++|+|.... |++++.||++++|+++. -+++.+|.+|.++|.|+++++++.++++||.|
T Consensus 288 ~tl~s~~d~ir~l~~~~sep~--lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~D 365 (577)
T KOG0642|consen 288 FTLRSHDDCIRALAFHPSEPV--LITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGID 365 (577)
T ss_pred eeeecchhhhhhhhcCCCCCe--EEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccC
Confidence 367789999999999996555 99999999999999932 26789999999999999999999999999999
Q ss_pred CeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeee
Q 004214 96 KVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQ 175 (768)
Q Consensus 96 g~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~ 175 (768)
|+|+.|++.... .|...
T Consensus 366 g~I~~w~~p~n~----------------dp~ds----------------------------------------------- 382 (577)
T KOG0642|consen 366 GTIRCWNLPPNQ----------------DPDDS----------------------------------------------- 382 (577)
T ss_pred ceeeeeccCCCC----------------Ccccc-----------------------------------------------
Confidence 999999874210 00000
Q ss_pred cCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEE
Q 004214 176 KSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYL 255 (768)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 255 (768)
T Consensus 383 -------------------------------------------------------------------------------- 382 (577)
T KOG0642|consen 383 -------------------------------------------------------------------------------- 382 (577)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecc--cCcEEEE
Q 004214 256 AVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGH--MGAVGAV 333 (768)
Q Consensus 256 ~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~v~~~ 333 (768)
|| .......+.||.+.++.+. +++.... |++++.||++++|+.....+ .++... .+.-.++
T Consensus 383 -----------~d--p~vl~~~l~Ghtdavw~l~--~s~~~~~-Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsv 445 (577)
T KOG0642|consen 383 -----------YD--PSVLSGTLLGHTDAVWLLA--LSSTKDR-LLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSV 445 (577)
T ss_pred -----------cC--cchhccceeccccceeeee--ecccccc-eeeecCCceEEeeccCCcCc-cccCCccccCCcceE
Confidence 00 0001125667888887775 4444443 88889999999998876655 222211 1222344
Q ss_pred EEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCc
Q 004214 334 AFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLV 413 (768)
Q Consensus 334 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~ 413 (768)
.+......+.++...-+.-.++++.......... ............++-+..+|.+.+.+++..|+.|+++|..+++
T Consensus 446 d~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~---s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~ 522 (577)
T KOG0642|consen 446 DRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFE---SSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGK 522 (577)
T ss_pred eeccchhHhhhhhcccccccchhhhhhhheeecc---ccCCCcccccCccceEEecCCCCeeEecccCCceecccccccc
Confidence 4433221122222222222233322211100000 0000001122457788899999999999999999999999999
Q ss_pred eEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCC
Q 004214 414 SVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHT 464 (768)
Q Consensus 414 ~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~ 464 (768)
++.....|...++++++.|+|.+|++++.|+.+++|.+....|+.....|.
T Consensus 523 ~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~r 573 (577)
T KOG0642|consen 523 ILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAHR 573 (577)
T ss_pred cchheeeccceecceeecCCCceEEeecCCceeehhhccchheeecccccc
Confidence 999999999999999999999999999999999999998888887766664
No 178
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.82 E-value=5.4e-18 Score=160.40 Aligned_cols=125 Identities=24% Similarity=0.353 Sum_probs=106.1
Q ss_pred EEEeecCCCcEEEEECCCC---------EEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECC--------C-
Q 004214 2 FALLEGADRKVLVWDVDGG---------FCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLL--------A- 63 (768)
Q Consensus 2 ~latg~~dg~i~vwd~~~~---------~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~--------~- 63 (768)
.+||||.|..|++|-+..+ +.+..|.+|...|+++.|+|+|.. ||||+++|.|.+|-.. +
T Consensus 28 ~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gel--LASg~D~g~v~lWk~~~~~~~~~d~e 105 (434)
T KOG1009|consen 28 KLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGEL--LASGGDGGEVFLWKQGDVRIFDADTE 105 (434)
T ss_pred ceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCe--eeecCCCceEEEEEecCcCCccccch
Confidence 5899999999999988422 234577899999999999999988 9999999999999765 2
Q ss_pred -------CeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeeeecce-eEeeEEecCCCC
Q 004214 64 -------KKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYE-MVEAVCAIPPGS 128 (768)
Q Consensus 64 -------~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~-~v~~~~~~~~~~ 128 (768)
......+.+|...|..++|+||+.++++++.|+.+++||+..|+.......+. .+..+++.|-+.
T Consensus 106 ~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~q 178 (434)
T KOG1009|consen 106 ADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQ 178 (434)
T ss_pred hhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhh
Confidence 23456778999999999999999999999999999999999999988876554 367777777665
No 179
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=2.2e-18 Score=161.64 Aligned_cols=300 Identities=17% Similarity=0.225 Sum_probs=205.5
Q ss_pred EEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECC------CCeeEEEec-CccceeEEEEEcCCCCEEEEEeCCC
Q 004214 24 HYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLL------AKKCVATLD-KHFSRVTSMAITSDGSTLISAGRDK 96 (768)
Q Consensus 24 ~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~------~~~~~~~l~-~h~~~V~~l~fs~d~~~L~s~~~dg 96 (768)
..+.+|.+.|.++.||.++++ |++|+.|..+++|++. +.+++.... .|.+.|.|++|...+..|++|+.++
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~--L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~ 127 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRF--LASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWG 127 (609)
T ss_pred hhhhhhccccceeeeccCCeE--EeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcc
Confidence 455689999999999999887 9999999999999984 345665554 3668999999999999999999999
Q ss_pred eEEEEECCCCeeeeeeecce---eEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceee
Q 004214 97 VVNLWDLRDYSCKLTVPTYE---MVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLY 173 (768)
Q Consensus 97 ~i~vWd~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~ 173 (768)
+|...|+++.+.+..+.... .+..+..+|... .|++.+.+|.|.+||.
T Consensus 128 ~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN-----------------------~~~~~t~~~~V~~~D~------ 178 (609)
T KOG4227|consen 128 TVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDN-----------------------TLIVVTRAKLVSFIDN------ 178 (609)
T ss_pred eeEeeecccceeeeeecccCcccceeecccCCCCc-----------------------eEEEEecCceEEEEec------
Confidence 99999999988776665433 333333333322 4444445555555544
Q ss_pred eecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCC
Q 004214 174 EQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQ 253 (768)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 253 (768)
...+..... .-+........++.|.|....
T Consensus 179 ----------------------------------------------Rd~~~~~~~----~~~AN~~~~F~t~~F~P~~P~ 208 (609)
T KOG4227|consen 179 ----------------------------------------------RDRQNPISL----VLPANSGKNFYTAEFHPETPA 208 (609)
T ss_pred ----------------------------------------------cCCCCCCce----eeecCCCccceeeeecCCCce
Confidence 433211100 112233445677888888889
Q ss_pred EEEEEeCCCcEEEEECCCceee-ee------eeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecc
Q 004214 254 YLAVATNIEQVQVYDLSSMSCS-YV------LAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGH 326 (768)
Q Consensus 254 ~l~~~~~~~~i~i~d~~~~~~~-~~------~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 326 (768)
+++++...+.+-+||....+.. .. ++.....-.+.. |.+.|.. +.+--....-.+||+.+..+...-..|
T Consensus 209 Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~--~~~~G~Q-~msiRR~~~P~~~D~~S~R~~V~k~D~ 285 (609)
T KOG4227|consen 209 LILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSL--WSPSGNQ-FMSIRRGKCPLYFDFISQRCFVLKSDH 285 (609)
T ss_pred eEEeccccCCCCceeeccccchHHhhhccccCcccchhhhhee--eCCCCCe-ehhhhccCCCEEeeeecccceeEeccC
Confidence 9999999999999998754422 11 111111112222 7777776 555444455567787775443322223
Q ss_pred c-------CcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCc-------------cccccceeeEeeccCCCeEEE
Q 004214 327 M-------GAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAE-------------QPMNLKAKAVVAAHGKDINSL 386 (768)
Q Consensus 327 ~-------~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-------------~~~~~~~~~~~~~~~~~i~~~ 386 (768)
. ..+.+++|..+. -+++|+.+-.|.+|.+........ ...-.....++.+|..-++.+
T Consensus 286 N~~GY~N~~T~KS~~F~~D~--~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQV 363 (609)
T KOG4227|consen 286 NPNGYCNIKTIKSMTFIDDY--TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQV 363 (609)
T ss_pred CCCcceeeeeeeeeeeecce--eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccce
Confidence 2 356788888763 389999999999999875432211 112234566788999999999
Q ss_pred EEccCCCEEEEEeCCCcEEEEeC
Q 004214 387 AVAPNDSLVCTGSQDRTACVWRL 409 (768)
Q Consensus 387 ~~s~~~~~l~~~~~dg~i~i~d~ 409 (768)
.|+|...+|++.+-.+.+++|.-
T Consensus 364 RF~~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 364 RFSQHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred eecCCcceEeccchhhheecccc
Confidence 99999999999999999999974
No 180
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=1.6e-18 Score=160.27 Aligned_cols=281 Identities=16% Similarity=0.207 Sum_probs=197.3
Q ss_pred EEEeecCCCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEe--cCcc-ceeE
Q 004214 2 FALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATL--DKHF-SRVT 78 (768)
Q Consensus 2 ~latg~~dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l--~~h~-~~V~ 78 (768)
.+|++.+.|.|++||..+|..+..|++|...+..++|..+.....+.+|+.||+|++||+.+......+ ..|. .+..
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~ 121 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFI 121 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcce
Confidence 478999999999999999999999999999999999987545556999999999999999887665443 4555 4667
Q ss_pred EEEEcCCCCEEEEEe----CCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEE
Q 004214 79 SMAITSDGSTLISAG----RDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFI 154 (768)
Q Consensus 79 ~l~fs~d~~~L~s~~----~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (768)
+++....++.++++. .+-.|.+||++..+..
T Consensus 122 ~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~--------------------------------------------- 156 (376)
T KOG1188|consen 122 CLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQL--------------------------------------------- 156 (376)
T ss_pred EeeccCcCCeEEeccccccCceEEEEEEeccccch---------------------------------------------
Confidence 777766677777664 2445666666543210
Q ss_pred EeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEee
Q 004214 155 TVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKR 234 (768)
Q Consensus 155 ~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~ 234 (768)
+..-
T Consensus 157 ----------------------------------------------------------------------------l~~~ 160 (376)
T KOG1188|consen 157 ----------------------------------------------------------------------------LRQL 160 (376)
T ss_pred ----------------------------------------------------------------------------hhhh
Confidence 1112
Q ss_pred ecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceee---eeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEE
Q 004214 235 LVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCS---YVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRL 311 (768)
Q Consensus 235 ~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~---~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~i 311 (768)
...|.+.|++++|.|.+.++|++|+.||-|.+||+.....- ...-.|...|.++. |..++-..+.+-+..++..+
T Consensus 161 ~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~ig--w~~~~ykrI~clTH~Etf~~ 238 (376)
T KOG1188|consen 161 NESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIG--WLSKKYKRIMCLTHMETFAI 238 (376)
T ss_pred hhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeee--eecCCcceEEEEEccCceeE
Confidence 33578899999999999999999999999999999765322 22345667788887 66666334888888999999
Q ss_pred EeCCCceEEEeeeccc------------CcEEEEEEecCCCcEEEEEeC-CCeEEEEeCCCCCCCCccccccceeeEeec
Q 004214 312 WDSESRCCVGVGTGHM------------GAVGAVAFSKKLQNFLVSGSS-DHTIKVWSFDGLSDDAEQPMNLKAKAVVAA 378 (768)
Q Consensus 312 wd~~~~~~~~~~~~~~------------~~v~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 378 (768)
|+++.+.+...+.... ..+-. +.+|.+...++.++. -+...++-+....... .......+.+
T Consensus 239 ~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~-~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~----~~~~~a~l~g 313 (376)
T KOG1188|consen 239 YELEDGSEETWLENPDVSADDLRKEDNCDYVIN-EHSPGDKDTCALAGTDSNKGTIFPLVDTSSGS----LLTEPAILQG 313 (376)
T ss_pred EEccCCChhhcccCccchhhhHHhhhhhhheee-cccCCCcceEEEeccccCceeEEEeeeccccc----ccCccccccC
Confidence 9999877554433210 01111 112433444544444 5666666554211110 2223333344
Q ss_pred -cCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 004214 379 -HGKDINSLAVAPNDSLVCTGSQDRTACVWRLP 410 (768)
Q Consensus 379 -~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~ 410 (768)
|..-|+++.|...+.++.+|+.||.+.+|..+
T Consensus 314 ~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 314 GHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVE 346 (376)
T ss_pred CcHHHHHHHhhhcccceeeccCCCceEEEEecC
Confidence 67778899999999999999999999999863
No 181
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=3e-18 Score=180.28 Aligned_cols=316 Identities=21% Similarity=0.346 Sum_probs=213.1
Q ss_pred CCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCc---cceeEEEEEcC-
Q 004214 9 DRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKH---FSRVTSMAITS- 84 (768)
Q Consensus 9 dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h---~~~V~~l~fs~- 84 (768)
+..|..||.. .+.+..+.-..+.|+|-... ++++...-.|+|||.+.++.+..|..+ ...|+.+.+-.
T Consensus 1049 t~~i~~W~~~------~~~~n~~~pk~~~~hpf~p~--i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe 1120 (1387)
T KOG1517|consen 1049 TNPIGNWDQK------FMTGNNQPPKTLKFHPFEPQ--IAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINE 1120 (1387)
T ss_pred cccccchHHH------HHhcCCCCCceeeecCCCce--eEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecc
Confidence 4445666642 12233345566778886665 888887788999999999999888754 34799999865
Q ss_pred -CCCEEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEE
Q 004214 85 -DGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVR 163 (768)
Q Consensus 85 -d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~ 163 (768)
|..+|++++.||.|+||+--...- . ...++++
T Consensus 1121 ~D~aLlLtas~dGvIRIwk~y~~~~----~------------------------------------~~eLVTa------- 1153 (1387)
T KOG1517|consen 1121 QDDALLLTASSDGVIRIWKDYADKW----K------------------------------------KPELVTA------- 1153 (1387)
T ss_pred cchhheeeeccCceEEEeccccccc----C------------------------------------CceeEEe-------
Confidence 566899999999999996321100 0 0011111
Q ss_pred EEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCcee
Q 004214 164 MWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEIL 243 (768)
Q Consensus 164 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 243 (768)
|..-++ .+......| .
T Consensus 1154 -w~~Ls~---------------------------------~~~~~r~~~------------------------------~ 1169 (1387)
T KOG1517|consen 1154 -WSSLSD---------------------------------QLPGARGTG------------------------------L 1169 (1387)
T ss_pred -eccccc---------------------------------cCccCCCCC------------------------------e
Confidence 111000 000001111 1
Q ss_pred EEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeee-CCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCc---eE
Q 004214 244 DLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLA-GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR---CC 319 (768)
Q Consensus 244 ~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~-~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~ 319 (768)
-+.|....+ +|.+++.-..|+|||.....+...++ +....++++. .....+.++++|..||.|++||.+.. ..
T Consensus 1170 v~dWqQ~~G-~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS--~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~ 1246 (1387)
T KOG1517|consen 1170 VVDWQQQSG-HLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALS--ADLVHGNIIAAGFADGSVRVYDRRMAPPDSL 1246 (1387)
T ss_pred eeehhhhCC-eEEecCCeeEEEEEecccceeEeecccCCCccceeec--ccccCCceEEEeecCCceEEeecccCCcccc
Confidence 122222233 45555556899999999888777664 3455667775 44444556999999999999998753 35
Q ss_pred EEeeecccCc--EEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEee--ccCCCeEEEEEccCCCEE
Q 004214 320 VGVGTGHMGA--VGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVA--AHGKDINSLAVAPNDSLV 395 (768)
Q Consensus 320 ~~~~~~~~~~--v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~s~~~~~l 395 (768)
+...+.|... |..+.+.+.|-.-+++|+.||.|++||++..... ....... ..++..+++.+++....+
T Consensus 1247 v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e-------~~~~iv~~~~yGs~lTal~VH~hapii 1319 (1387)
T KOG1517|consen 1247 VCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKE-------TFLTIVAHWEYGSALTALTVHEHAPII 1319 (1387)
T ss_pred ceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCccc-------ccceeeeccccCccceeeeeccCCCee
Confidence 6677788887 9999999987667999999999999999864110 1111111 123468999999999999
Q ss_pred EEEeCCCcEEEEeCCCCceEEEEec-------cCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCc
Q 004214 396 CTGSQDRTACVWRLPDLVSVVTFRG-------HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGS 455 (768)
Q Consensus 396 ~~~~~dg~i~i~d~~~~~~~~~~~~-------~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~ 455 (768)
|+|+. +.|+||++... .+..++. ..+.+.|++|+|..-++|+|+.|.+|.||......
T Consensus 1320 AsGs~-q~ikIy~~~G~-~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1320 ASGSA-QLIKIYSLSGE-QLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred eecCc-ceEEEEecChh-hhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 99998 99999998533 3332222 24568999999999999999999999999876543
No 182
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.81 E-value=2.6e-18 Score=161.66 Aligned_cols=213 Identities=16% Similarity=0.290 Sum_probs=175.1
Q ss_pred eeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEcc-CCCEEEEEeC
Q 004214 322 VGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQ 400 (768)
Q Consensus 322 ~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~ 400 (768)
.+.+|+++|..++|+|-+.+.+++||.|.+|.+|.+........ ...+...+.+|...|..++|+| -.+.|++++.
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~---ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~ 152 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRD---LTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGS 152 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccC---cccceEEEeecceeEEEEeecccchhhHhhccC
Confidence 45689999999999999888999999999999999986543322 2246777899999999999999 4678999999
Q ss_pred CCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCc-EEEEEEEeCCCEE
Q 004214 401 DRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSS-VLRASFLTRGAQI 479 (768)
Q Consensus 401 dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l 479 (768)
|.+|.+|++.+++.+.++. |...|+++.|+.+|.+|++++.|+.|||||.++++.+..-.+|.+. -..+.|..+|..+
T Consensus 153 Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~ 231 (472)
T KOG0303|consen 153 DNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIF 231 (472)
T ss_pred CceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCcee
Confidence 9999999999999999988 9999999999999999999999999999999999999988888763 5667888999855
Q ss_pred EEEe---CCCcEEEEECCCCe---EEEEeccCCCcEEEEEEcCCCCEEEE-EeCCCcEEEEEcCCHH
Q 004214 480 VSCG---ADGLVKLWTVRTGE---CIATYDKHEDKIWALAVGKKTEMFAT-GGSDALVNLWHDSTAA 539 (768)
Q Consensus 480 ~s~~---~dg~i~iwd~~~~~---~~~~~~~~~~~v~~l~~s~~~~~l~s-~~~dg~v~vw~~~~~~ 539 (768)
-+|- .+.++-+||..+-+ ....++. ++.|.---+.+|...+.. |-.|+.|+.|++....
T Consensus 232 tTGfsr~seRq~aLwdp~nl~eP~~~~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 232 TTGFSRMSERQIALWDPNNLEEPIALQELDT-SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred eeccccccccceeccCcccccCcceeEEecc-CCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 4443 36789999976543 3445553 344544457788777665 4479999999987643
No 183
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=1.6e-17 Score=146.30 Aligned_cols=235 Identities=17% Similarity=0.259 Sum_probs=175.1
Q ss_pred eecCCCEEEEEEeCCCeEEEEeCCC----------ceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCC
Q 004214 292 ALSSGKILIVTGSKDNSVRLWDSES----------RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLS 361 (768)
Q Consensus 292 ~~~~~~~~l~~~~~dg~i~iwd~~~----------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 361 (768)
+.|.++ +|++|+.+|.|.+..+.+ ...+....+|.+++..++|..+ +|++|+ ||.|+-|..+...
T Consensus 18 ~sp~~~-~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~---~Lls~g-dG~V~gw~W~E~~ 92 (325)
T KOG0649|consen 18 ISPSKQ-YLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDD---FLLSGG-DGLVYGWEWNEEE 92 (325)
T ss_pred hCCcce-EEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehh---heeecc-CceEEEeeehhhh
Confidence 445555 499999999999998753 2334455899999999999954 566665 4999999887543
Q ss_pred CCCcccc--cc-ceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEE
Q 004214 362 DDAEQPM--NL-KAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVI 438 (768)
Q Consensus 362 ~~~~~~~--~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~ 438 (768)
....... .. .+...-...-..|+++...|..+-++.++.|+.++-||+++|+...+++||+..|.++.--.....++
T Consensus 93 es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qil 172 (325)
T KOG0649|consen 93 ESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQIL 172 (325)
T ss_pred hhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCccee
Confidence 2111000 00 01111111234689999999877777888999999999999999999999999999999855566788
Q ss_pred EeeCCCcEEEEeCCCCceeEEeecCC----------CcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCc
Q 004214 439 TASGDKTIKIWSISDGSCLKTFEGHT----------SSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDK 508 (768)
Q Consensus 439 t~~~d~~i~iwd~~~~~~~~~~~~~~----------~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 508 (768)
+|++||++|+||+++++++..+.... ..|.+++ -+..+|++|+. ..+.+|.+++.++...+. -..+
T Consensus 173 sG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala--~~edWlvCGgG-p~lslwhLrsse~t~vfp-ipa~ 248 (325)
T KOG0649|consen 173 SGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALA--VNEDWLVCGGG-PKLSLWHLRSSESTCVFP-IPAR 248 (325)
T ss_pred ecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEe--ccCceEEecCC-CceeEEeccCCCceEEEe-cccc
Confidence 99999999999999999998876322 2354444 45568887764 569999999999988886 6677
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 004214 509 IWALAVGKKTEMFATGGSDALVNLWHDST 537 (768)
Q Consensus 509 v~~l~~s~~~~~l~s~~~dg~v~vw~~~~ 537 (768)
+..+.|. ...++++|....|.-|.+..
T Consensus 249 v~~v~F~--~d~vl~~G~g~~v~~~~l~G 275 (325)
T KOG0649|consen 249 VHLVDFV--DDCVLIGGEGNHVQSYTLNG 275 (325)
T ss_pred eeEeeee--cceEEEeccccceeeeeecc
Confidence 8888885 44677888777888887654
No 184
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.80 E-value=8.3e-18 Score=175.30 Aligned_cols=280 Identities=17% Similarity=0.193 Sum_probs=202.1
Q ss_pred CCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCee--EEEe----cCccceeEEEEE
Q 004214 9 DRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKC--VATL----DKHFSRVTSMAI 82 (768)
Q Consensus 9 dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~--~~~l----~~h~~~V~~l~f 82 (768)
++.+.||++.........-.-...|+|++|+|... .++|.|..+|.|.+||+..+.. ...+ ..|..+|+.+.|
T Consensus 221 ~~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p-~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW 299 (555)
T KOG1587|consen 221 DGVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDP-NLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVW 299 (555)
T ss_pred CceEEEEecCCCCCceEEEecCCceeEEEeccCCc-ceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEE
Confidence 34799999977632333333678999999999743 5799999999999999987655 3222 358889999999
Q ss_pred cCCCC--EEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCc
Q 004214 83 TSDGS--TLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERG 160 (768)
Q Consensus 83 s~d~~--~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 160 (768)
..+.. -+++++.||.|..|+++...........+ +
T Consensus 300 ~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~--------~----------------------------------- 336 (555)
T KOG1587|consen 300 LQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLE--------S----------------------------------- 336 (555)
T ss_pred eccCCCCceEEEecCCcEeeeeccccccchhhcccc--------c-----------------------------------
Confidence 76544 48999999999999765432110000000 0
Q ss_pred EEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCC
Q 004214 161 IVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNE 240 (768)
Q Consensus 161 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (768)
............
T Consensus 337 --------------------------------------------------------------------~~~~~~~~~~~~ 348 (555)
T KOG1587|consen 337 --------------------------------------------------------------------KKHKGQQSSKAV 348 (555)
T ss_pred --------------------------------------------------------------------cccccccccccc
Confidence 000000011123
Q ss_pred ceeEEEEecCCCCEEEEEeCCCcEEEEECCCcee--------eeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEE
Q 004214 241 EILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSC--------SYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLW 312 (768)
Q Consensus 241 ~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~--------~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iw 312 (768)
.++.+.|.+.+...+++|+..|.|.--+...... ...+..|.++|+++. +.|-...++.+++ |.+++||
T Consensus 349 ~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~--~nPF~~k~fls~g-DW~vriW 425 (555)
T KOG1587|consen 349 GATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVS--RNPFYPKNFLSVG-DWTVRIW 425 (555)
T ss_pred ceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeee--cCCCccceeeeec-cceeEec
Confidence 5678888888899999999999998844433221 235567899999998 6666666566666 9999999
Q ss_pred eCC-CceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccC
Q 004214 313 DSE-SRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN 391 (768)
Q Consensus 313 d~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 391 (768)
... ...++..+..+...|++++|+|..+.+|+++..||.+.+||+...... +......+....+.+.|+++
T Consensus 426 s~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~--------Pv~s~~~~~~~l~~~~~s~~ 497 (555)
T KOG1587|consen 426 SEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEE--------PVLSQKVCSPALTRVRWSPN 497 (555)
T ss_pred cccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccC--------CcccccccccccceeecCCC
Confidence 988 677787888888889999999998889999999999999999855322 22222233556678889999
Q ss_pred CCEEEEEeCCCcEEEEeCCC
Q 004214 392 DSLVCTGSQDRTACVWRLPD 411 (768)
Q Consensus 392 ~~~l~~~~~dg~i~i~d~~~ 411 (768)
|+.|++|...|++++|++..
T Consensus 498 g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 498 GKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred CcEEEEecCCCcEEEEEcCc
Confidence 99999999999999999864
No 185
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=3.6e-16 Score=159.52 Aligned_cols=511 Identities=13% Similarity=0.145 Sum_probs=308.0
Q ss_pred EEeecCCCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeC----------CCccEEEEEeCCCcEEEEECCCCeeEEEecC
Q 004214 3 ALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPD----------TDKSLLFSGSDDATVRVWDLLAKKCVATLDK 72 (768)
Q Consensus 3 latg~~dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd----------~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~ 72 (768)
|++.|+...|.|-|..+-+.++.+.-|...|+.+.|.|- ....+||++...|.|.+||...+..+..+..
T Consensus 28 LiAygshslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~ 107 (1062)
T KOG1912|consen 28 LIAYGSHSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSH 107 (1062)
T ss_pred eEEEecCceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcC
Confidence 455677899999999999999999999999999999763 2346789999999999999999999999999
Q ss_pred ccceeEEEEEcC---CC-CEEEEEeCCCeEEEEECCCCeeeeeeecce-eEeeEEecCCCCCccccccccchhhh-----
Q 004214 73 HFSRVTSMAITS---DG-STLISAGRDKVVNLWDLRDYSCKLTVPTYE-MVEAVCAIPPGSAFDSFLSSYNQQTI----- 142 (768)
Q Consensus 73 h~~~V~~l~fs~---d~-~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~----- 142 (768)
|..+|..++|-+ +. ..|+.......+.+|+..+|+......... ...++.+.|-...-..+++..+....
T Consensus 108 ~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~ 187 (1062)
T KOG1912|consen 108 SNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLG 187 (1062)
T ss_pred CCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccC
Confidence 999999999976 34 467777778899999999998776654332 23334444433321111111000000
Q ss_pred -------------------------------hccc----------------CCcceEEEEeeCCcEEEEEEcCCceeeee
Q 004214 143 -------------------------------KKKR----------------RSLEIHFITVGERGIVRMWNADSACLYEQ 175 (768)
Q Consensus 143 -------------------------------~~~~----------------~~~~~~~~~~~~~g~i~iwd~~~~~~~~~ 175 (768)
.... .+....++-..-...+.++|++-.+....
T Consensus 188 ~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~v 267 (1062)
T KOG1912|consen 188 LSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAV 267 (1062)
T ss_pred CCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEE
Confidence 0000 00001122222333456666655533221
Q ss_pred cCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCccccee------------eEEEeeecccCCcee
Q 004214 176 KSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKME------------LILSKRLVGYNEEIL 243 (768)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~------------~~~~~~~~~~~~~i~ 243 (768)
... ......+....-.|..+.++|+..||.+.+|.....+..... ....+... .-.+.
T Consensus 268 vpi--------er~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~--~~rp~ 337 (1062)
T KOG1912|consen 268 VPI--------ERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPME--EFRPV 337 (1062)
T ss_pred EEe--------ccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeech--hcccc
Confidence 111 111122344444455677899999999999987765432111 00011111 11122
Q ss_pred EEEEecCCCCEEEEEeCCCcEEEEECCCceeee-------------------------------eeeCCccceEEEeee-
Q 004214 244 DLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSY-------------------------------VLAGHSEIVLCLDTC- 291 (768)
Q Consensus 244 ~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~-------------------------------~~~~~~~~v~~l~~~- 291 (768)
.....|.+...+++--.+|.+.+|.+.+++... .-.+|.....|...-
T Consensus 338 ~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p 417 (1062)
T KOG1912|consen 338 IGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRP 417 (1062)
T ss_pred eeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCceeeeccc
Confidence 233344456667777777888888877543210 001344444443311
Q ss_pred -------eecCC-------CEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeC---------
Q 004214 292 -------ALSSG-------KILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSS--------- 348 (768)
Q Consensus 292 -------~~~~~-------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~--------- 348 (768)
..+++ -.+++.|+..|+|.++|+.++.....+..|++.|.++.|..... +++.+.
T Consensus 418 ~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~ss--lvSfsys~~n~~sg~ 495 (1062)
T KOG1912|consen 418 MPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSS--LVSFSYSHVNSASGG 495 (1062)
T ss_pred CcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhhcccccceeeeeecccee--EEEeeeccccccccc
Confidence 11111 13688999999999999999999999999999999999987643 555443
Q ss_pred -CCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEE----------E
Q 004214 349 -DHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVV----------T 417 (768)
Q Consensus 349 -dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~----------~ 417 (768)
-+.+.+-|++++-... ..........+|+.+..|..|++++....+.-+.+||+++..++. .
T Consensus 496 vrN~l~vtdLrtGlsk~-------fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~a~P~it~ 568 (1062)
T KOG1912|consen 496 VRNDLVVTDLRTGLSKR-------FRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSLALPLITV 568 (1062)
T ss_pred eeeeEEEEEcccccccc-------cccCCCCCcCcceeeeecccCceEEEEecccchHHHhhccchHHHHHhhcCCcEEE
Confidence 2345667777653211 122223456789999999999999999999999999986543211 0
Q ss_pred E----ecc------------------------CCC---------------------------eEEEEEccCCCEEEEeeC
Q 004214 418 F----RGH------------------------KRG---------------------------IWSVEFSPVDQVVITASG 442 (768)
Q Consensus 418 ~----~~~------------------------~~~---------------------------v~~v~~s~~~~~l~t~~~ 442 (768)
+ ..| ... +..++|- +..++.|..
T Consensus 569 leWsl~~~~si~qk~ls~q~sms~n~vv~ds~es~~~~~~~~a~~~sdgsq~~~a~esfafal~~mAwk--~d~lv~GD~ 646 (1062)
T KOG1912|consen 569 LEWSLPKHPSIKQKELSKQSSMSENLVVLDSVESRIYHITLSALVVSDGSQVNTAWESFAFALCAMAWK--DDILVVGDV 646 (1062)
T ss_pred EeecccCCCCcccccchhhhhhhhceeeeccccchheehhhhhhhhccccchhhHHHHHHHHHHhhhcc--CCeeEeecc
Confidence 0 000 000 0112222 557899999
Q ss_pred CCcEEEEeCCCCceeE--EeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEE--EEcCCC
Q 004214 443 DKTIKIWSISDGSCLK--TFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWAL--AVGKKT 518 (768)
Q Consensus 443 d~~i~iwd~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l--~~s~~~ 518 (768)
+|++.+||+.-..... ....|........+.|....++.--.|+ +-+||.+....+..+.+-...-..+ .|....
T Consensus 647 ~GNl~~WDlg~R~SRg~~d~p~~ra~~l~~~~ipG~~~~lvl~~d~-~~lwdtk~~~lV~siag~dssfrlldvdlc~~~ 725 (1062)
T KOG1912|consen 647 EGNLVVWDLGRRQSRGVRDSPDPRAHSLTFPQIPGDHTTLVLELDW-LPLWDTKADTLVLSIAGMDSSFRLLDVDLCEKS 725 (1062)
T ss_pred cCceeEEecccccccCccCCCCchhhheecccCCCCceEEEEecCc-ceecccccceeeeeeccCCcceEEEEEEecccC
Confidence 9999999975332222 1222333333334445433444444454 7889998888888886555544444 444333
Q ss_pred CEEEEEeCCCcEEEEEcCC
Q 004214 519 EMFATGGSDALVNLWHDST 537 (768)
Q Consensus 519 ~~l~s~~~dg~v~vw~~~~ 537 (768)
..++ ..|.++++-....
T Consensus 726 ~~~l--~~d~~~Rf~~m~m 742 (1062)
T KOG1912|consen 726 PLVL--PNDNKERFRVMPM 742 (1062)
T ss_pred ceec--CCCCceeEEeccc
Confidence 3333 3344666655443
No 186
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.80 E-value=1.7e-17 Score=149.84 Aligned_cols=279 Identities=22% Similarity=0.321 Sum_probs=202.4
Q ss_pred CCcEEEEECCCC--EEE-EEEEcCCCcEEEEEEeeCCCccEEEEEeCC-------CcEEEEECCC---------CeeEEE
Q 004214 9 DRKVLVWDVDGG--FCT-HYFKGHKGVVSSILFHPDTDKSLLFSGSDD-------ATVRVWDLLA---------KKCVAT 69 (768)
Q Consensus 9 dg~i~vwd~~~~--~~~-~~l~gh~~~V~~l~~spd~~~~~l~sg~~d-------g~I~iWd~~~---------~~~~~~ 69 (768)
|+.|.+.+.+.+ ... ..|..|.+.|..++-+|-..+ +|+|+..+ ..+.||.+.. -+++..
T Consensus 39 dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~-ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~ 117 (370)
T KOG1007|consen 39 DNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQR-ILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVAS 117 (370)
T ss_pred cceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCc-eEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhc
Confidence 566776666433 222 356678999999999997554 56766442 2478998853 345666
Q ss_pred ec-CccceeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee-eeeecceeEeeEEecCCCCCccccccccchhhhhcccC
Q 004214 70 LD-KHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCK-LTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRR 147 (768)
Q Consensus 70 l~-~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (768)
|. .+-+.|.|+.|.|++..|++.. |..|.+|++..+..+ ..++...
T Consensus 118 Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~------------------------------- 165 (370)
T KOG1007|consen 118 LDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSE------------------------------- 165 (370)
T ss_pred CCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccc-------------------------------
Confidence 65 5667899999999999999887 778999999875431 1111000
Q ss_pred CcceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccce
Q 004214 148 SLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKM 227 (768)
Q Consensus 148 ~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~ 227 (768)
T Consensus 166 -------------------------------------------------------------------------------- 165 (370)
T KOG1007|consen 166 -------------------------------------------------------------------------------- 165 (370)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeEEEeeecccCCceeEEEEec-CCCCEEEEEeCCCcEEEEECCCceeeeee-eCCccceEEEeeeeecCCCEEEEEEeC
Q 004214 228 ELILSKRLVGYNEEILDLKFLG-EEEQYLAVATNIEQVQVYDLSSMSCSYVL-AGHSEIVLCLDTCALSSGKILIVTGSK 305 (768)
Q Consensus 228 ~~~~~~~~~~~~~~i~~~~~~~-~~~~~l~~~~~~~~i~i~d~~~~~~~~~~-~~~~~~v~~l~~~~~~~~~~~l~~~~~ 305 (768)
..++....++-+|+| .+++.++ .+++++++.||+++..+...+ ..|...|..++ +.|+...+|++|+.
T Consensus 166 -------s~e~~~~ftsg~WspHHdgnqv~-tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlD--fNpnkq~~lvt~gD 235 (370)
T KOG1007|consen 166 -------SAEMRHSFTSGAWSPHHDGNQVA-TTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLD--FNPNKQHILVTCGD 235 (370)
T ss_pred -------cccccceecccccCCCCccceEE-EeCCCcEEEEEccchhhhcchhhhhcceeeecc--CCCCceEEEEEcCC
Confidence 000122334445555 3444444 455699999999998877666 56888999999 88999999999999
Q ss_pred CCeEEEEeCCC-ceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCc-------------------
Q 004214 306 DNSVRLWDSES-RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAE------------------- 365 (768)
Q Consensus 306 dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~------------------- 365 (768)
||.|++||.+. ..++..+.+|...|+++.|+|....++++|+.|..|.+|-.........
T Consensus 236 dgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~ 315 (370)
T KOG1007|consen 236 DGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERV 315 (370)
T ss_pred CccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhc
Confidence 99999999975 5678899999999999999998888999999999999997654321110
Q ss_pred cccccceeeEeeccCCCeEEEEEccC-CCEEEEEeCCCcEEEEeCC
Q 004214 366 QPMNLKAKAVVAAHGKDINSLAVAPN-DSLVCTGSQDRTACVWRLP 410 (768)
Q Consensus 366 ~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~i~d~~ 410 (768)
.+..-....++..|.+.|.+++||.- .=.+|+-++||.+.|=.+.
T Consensus 316 kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 316 KPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred ccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 12222334567789999999999984 4567788999999887654
No 187
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.79 E-value=1.4e-19 Score=185.45 Aligned_cols=289 Identities=22% Similarity=0.320 Sum_probs=229.9
Q ss_pred EEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeE
Q 004214 230 ILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSV 309 (768)
Q Consensus 230 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i 309 (768)
...+.+.||...|+|..|. ..+.++++|++|..++||..++..+.....||.+.++.++ .+..+.++++++.|..|
T Consensus 181 k~ikrLlgH~naVyca~fD-rtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdla---vs~~n~~iaaaS~D~vI 256 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFD-RTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLA---VSSNNTMIAAASNDKVI 256 (1113)
T ss_pred HHHHHHHhhhhheeeeeec-cccceEeecCccceeeeeeccchhhhccCCCCccccchhc---cchhhhhhhhcccCceE
Confidence 3446688999999999986 4788999999999999999999999999999999999995 34455569999999999
Q ss_pred EEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEc
Q 004214 310 RLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVA 389 (768)
Q Consensus 310 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 389 (768)
++|.+..+.++..+.+|++.|++++|+|- .+.+.||++++||.+-.... ..+........+-+.++.|.
T Consensus 257 rvWrl~~~~pvsvLrghtgavtaiafsP~-----~sss~dgt~~~wd~r~~~~~------y~prp~~~~~~~~~~s~~~~ 325 (1113)
T KOG0644|consen 257 RVWRLPDGAPVSVLRGHTGAVTAIAFSPR-----ASSSDDGTCRIWDARLEPRI------YVPRPLKFTEKDLVDSILFE 325 (1113)
T ss_pred EEEecCCCchHHHHhccccceeeeccCcc-----ccCCCCCceEeccccccccc------cCCCCCCcccccceeeeecc
Confidence 99999999999999999999999999995 37889999999998722110 00111111123567788888
Q ss_pred cCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccC-CCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEE
Q 004214 390 PNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPV-DQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVL 468 (768)
Q Consensus 390 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~ 468 (768)
.++.-+++|+.|+.-..|.+.... .+...+.-+.++.+ ..+.+++-.+-.+++|++.+|...+.+.+|...+.
T Consensus 326 ~~~~~f~Tgs~d~ea~n~e~~~l~------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~y 399 (1113)
T KOG0644|consen 326 NNGDRFLTGSRDGEARNHEFEQLA------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVY 399 (1113)
T ss_pred ccccccccccCCcccccchhhHhh------hhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhccccccee
Confidence 899999999999998888764321 12221212222222 24666777788899999999999999999999999
Q ss_pred EEEEEeCCCE-EEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCHH
Q 004214 469 RASFLTRGAQ-IVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAA 539 (768)
Q Consensus 469 ~~~~s~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~~ 539 (768)
.+.++|.... ..+++.||...|||+-.|.+++.+....+.+..-.||++|..++....-|.+.|.....++
T Consensus 400 vLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~ 471 (1113)
T KOG0644|consen 400 VLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSK 471 (1113)
T ss_pred eeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCc
Confidence 9999997655 4688999999999999999988877566778888999999999988888888887655443
No 188
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=8.5e-18 Score=164.62 Aligned_cols=222 Identities=16% Similarity=0.239 Sum_probs=157.7
Q ss_pred EEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhccc
Q 004214 67 VATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKR 146 (768)
Q Consensus 67 ~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (768)
-+.|.||.+.|.++.|+.+|.+|++|+.|-.+.|||.-..+++..+.
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~--------------------------------- 89 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSIS--------------------------------- 89 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeee---------------------------------
Confidence 45688999999999999999999999999999999987655443332
Q ss_pred CCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccc
Q 004214 147 RSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKK 226 (768)
Q Consensus 147 ~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~ 226 (768)
T Consensus 90 -------------------------------------------------------------------------------- 89 (758)
T KOG1310|consen 90 -------------------------------------------------------------------------------- 89 (758)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeEEEeeecccCCceeEEEEecC-CCCEEEEEeCCCcEEEEECCC----------ceeeeeeeCCccceEEEeeeeecC
Q 004214 227 MELILSKRLVGYNEEILDLKFLGE-EEQYLAVATNIEQVQVYDLSS----------MSCSYVLAGHSEIVLCLDTCALSS 295 (768)
Q Consensus 227 ~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~~~~~i~i~d~~~----------~~~~~~~~~~~~~v~~l~~~~~~~ 295 (768)
.||...|.++.|.|. ++..+++|..|..|++||+.. ......+..|...|.-++ ..+.
T Consensus 90 ---------TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria--~~p~ 158 (758)
T KOG1310|consen 90 ---------TGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIA--TAPN 158 (758)
T ss_pred ---------cccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhhee--cCCC
Confidence 256667788888774 445677788889999999874 234456678999998887 5566
Q ss_pred CCEEEEEEeCCCeEEEEeCCCceE----------EEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCC-
Q 004214 296 GKILIVTGSKDNSVRLWDSESRCC----------VGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDA- 364 (768)
Q Consensus 296 ~~~~l~~~~~dg~i~iwd~~~~~~----------~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~- 364 (768)
+...+.+++.||+|+-+|++.... +..+...--...++.++|..+.+|++|+.|-..++||.+......
T Consensus 159 ~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~ 238 (758)
T KOG1310|consen 159 GPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFR 238 (758)
T ss_pred CCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCC
Confidence 767799999999999999975211 111112234567899999999999999999999999954321100
Q ss_pred -------ccccccceee-EeeccC-----------CCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 004214 365 -------EQPMNLKAKA-VVAAHG-----------KDINSLAVAPNDSLVCTGSQDRTACVWRLPDL 412 (768)
Q Consensus 365 -------~~~~~~~~~~-~~~~~~-----------~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~ 412 (768)
..+....... ...+|- ..++-++|+|+|..|++.-..-.|+++|+..+
T Consensus 239 s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~ 305 (758)
T KOG1310|consen 239 SDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNED 305 (758)
T ss_pred CCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCC
Confidence 0010000111 111111 22567899999998888776678999998644
No 189
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=2.1e-17 Score=155.16 Aligned_cols=249 Identities=16% Similarity=0.194 Sum_probs=181.8
Q ss_pred ccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeC--CccceEEEeeeeecCCCEEEEEEeCCCeEEEEeC
Q 004214 237 GYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAG--HSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDS 314 (768)
Q Consensus 237 ~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~--~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~ 314 (768)
.|.+.|.+++|.. ....+.+|..+++|...|+++.+.+..+.. ..+.|+.+. ..|.++. |++.+.+|.|.+||.
T Consensus 103 ~H~SNIF~L~F~~-~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~--~~P~DN~-~~~~t~~~~V~~~D~ 178 (609)
T KOG4227|consen 103 PHRSNIFSLEFDL-ENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMD--QHPTDNT-LIVVTRAKLVSFIDN 178 (609)
T ss_pred ccccceEEEEEcc-CCeeEecCCCcceeEeeecccceeeeeecccCcccceeecc--cCCCCce-EEEEecCceEEEEec
Confidence 3557888999874 567888999999999999999988876642 345899988 7777665 999999999999998
Q ss_pred CCce-EE--EeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccC
Q 004214 315 ESRC-CV--GVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN 391 (768)
Q Consensus 315 ~~~~-~~--~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 391 (768)
+... .. ..+.........+.|+|..+.+|++.+..+-+.+||.+....... .......+......-.++.|+|+
T Consensus 179 Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~---~~~~~~~L~~~~~~~M~~~~~~~ 255 (609)
T KOG4227|consen 179 RDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVY---QRSMFKGLPQENTEWMGSLWSPS 255 (609)
T ss_pred cCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHH---hhhccccCcccchhhhheeeCCC
Confidence 7654 11 112234456778899999898999999999999999985432110 00001111111223467889999
Q ss_pred CCEEEEEeCCCcEEEEeCCCCceEEEEeccC-------CCeEEEEEccCCCEEEEeeCCCcEEEEeCCC-----C-----
Q 004214 392 DSLVCTGSQDRTACVWRLPDLVSVVTFRGHK-------RGIWSVEFSPVDQVVITASGDKTIKIWSISD-----G----- 454 (768)
Q Consensus 392 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-------~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~-----~----- 454 (768)
|..+.+--....-.+||+.+..+..--..|. ..+.+++|..+. .+++|+.+-.|++|.+.. |
T Consensus 256 G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG 334 (609)
T KOG4227|consen 256 GNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIG 334 (609)
T ss_pred CCeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccC
Confidence 9999887776677788887754433222232 246678887654 499999999999998742 1
Q ss_pred -------------ceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEEC
Q 004214 455 -------------SCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTV 493 (768)
Q Consensus 455 -------------~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 493 (768)
..+..++||..-+..+.|+|...+|++.+....+++|..
T Consensus 335 ~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 335 HDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred cchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheecccc
Confidence 134567899999999999999999999999999999964
No 190
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.78 E-value=5.7e-19 Score=180.98 Aligned_cols=285 Identities=18% Similarity=0.258 Sum_probs=223.2
Q ss_pred EEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 004214 24 HYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDL 103 (768)
Q Consensus 24 ~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~ 103 (768)
..|.||..+|.|.+|...|.+ +++|++|..|+||..+++.++..+.||.+.|+.++.+.+..++++++.|..|++|.+
T Consensus 184 krLlgH~naVyca~fDrtg~~--Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl 261 (1113)
T KOG0644|consen 184 KRLLGHRNAVYCAIFDRTGRY--IITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRL 261 (1113)
T ss_pred HHHHhhhhheeeeeeccccce--EeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEec
Confidence 356789999999999998888 999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeeeeeecce-eEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCc-eeeeecCCcee
Q 004214 104 RDYSCKLTVPTYE-MVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSA-CLYEQKSSDVT 181 (768)
Q Consensus 104 ~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~-~~~~~~~~~~~ 181 (768)
.++.++..+..+. .+.+++|+|-. +.+.||++++||..-. ..+......
T Consensus 262 ~~~~pvsvLrghtgavtaiafsP~~---------------------------sss~dgt~~~wd~r~~~~~y~prp~~-- 312 (1113)
T KOG0644|consen 262 PDGAPVSVLRGHTGAVTAIAFSPRA---------------------------SSSDDGTCRIWDARLEPRIYVPRPLK-- 312 (1113)
T ss_pred CCCchHHHHhccccceeeeccCccc---------------------------cCCCCCceEeccccccccccCCCCCC--
Confidence 9999998887665 58999998853 5678999999998822 111111111
Q ss_pred ecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCC
Q 004214 182 ISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNI 261 (768)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~ 261 (768)
......+....+...+..+++++.++.-..|...... .+...+.-+.+.+....+.+++-.+
T Consensus 313 -----~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~-------------~~~~~lif~t~ssd~~~~~~~ar~~ 374 (1113)
T KOG0644|consen 313 -----FTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLA-------------WRSNLLIFVTRSSDLSSIVVTARND 374 (1113)
T ss_pred -----cccccceeeeeccccccccccccCCcccccchhhHhh-------------hhccceEEEeccccccccceeeeee
Confidence 1122455666777888888899988887777654322 1222222222333334567777788
Q ss_pred CcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCc
Q 004214 262 EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQN 341 (768)
Q Consensus 262 ~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 341 (768)
-.+.+|++.++.....+.+|...+..+. +.+-+.....+++.||...|||+-.|.++..+....+.+...+|+++|..
T Consensus 375 ~~~~vwnl~~g~l~H~l~ghsd~~yvLd--~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts 452 (1113)
T KOG0644|consen 375 HRLCVWNLYTGQLLHNLMGHSDEVYVLD--VHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTS 452 (1113)
T ss_pred eEeeeeecccchhhhhhcccccceeeee--ecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCce
Confidence 8999999999999999999999999998 77777776788999999999999998887766544567778899999874
Q ss_pred EEEEEeCCCeEEEEeCCCC
Q 004214 342 FLVSGSSDHTIKVWSFDGL 360 (768)
Q Consensus 342 ~l~s~~~dg~i~iwd~~~~ 360 (768)
++....-|.+.|.....+
T Consensus 453 -~~lsd~hgql~i~g~gqs 470 (1113)
T KOG0644|consen 453 -IALSDDHGQLYILGTGQS 470 (1113)
T ss_pred -EecCCCCCceEEeccCCC
Confidence 566666688888765533
No 191
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=3.2e-18 Score=165.48 Aligned_cols=301 Identities=23% Similarity=0.279 Sum_probs=234.6
Q ss_pred eEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeee-eCCccceEEEeeeeecCCCEEEEEEeCCC
Q 004214 229 LILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVL-AGHSEIVLCLDTCALSSGKILIVTGSKDN 307 (768)
Q Consensus 229 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~-~~~~~~v~~l~~~~~~~~~~~l~~~~~dg 307 (768)
+.+...+.+|.+.|..+.|.. .+..+++++.+..|.+||..++.....+ .+|...|....+..+..+.. +++++.||
T Consensus 132 ~~l~~kL~~H~GcVntV~FN~-~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~t-i~~~s~dg 209 (559)
T KOG1334|consen 132 LRLQKKLNKHKGCVNTVHFNQ-RGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRT-IVTSSRDG 209 (559)
T ss_pred hhhhhcccCCCCccceeeecc-cCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcC-ceeccccC
Confidence 445567888999999999984 7889999999999999999988776655 67888888877556666666 99999999
Q ss_pred eEEEEeCCC-ceE--EEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCC---
Q 004214 308 SVRLWDSES-RCC--VGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGK--- 381 (768)
Q Consensus 308 ~i~iwd~~~-~~~--~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--- 381 (768)
.+++=.+.. +.+ ...+..|.++|.-++.-|+...-|.+++.|+.+.-+|++...... .......+..
T Consensus 210 qvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~-------~~~cr~~~~~~~v 282 (559)
T KOG1334|consen 210 QVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAE-------KFVCREADEKERV 282 (559)
T ss_pred ceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccc-------eeeeeccCCccce
Confidence 999877643 222 234557999999999999999899999999999999988653221 1112223333
Q ss_pred CeEEEEEccCC-CEEEEEeCCCcEEEEeCCCCce------EEEEec------cCCCeEEEEEccCCCEEEEeeCCCcEEE
Q 004214 382 DINSLAVAPND-SLVCTGSQDRTACVWRLPDLVS------VVTFRG------HKRGIWSVEFSPVDQVVITASGDKTIKI 448 (768)
Q Consensus 382 ~i~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~------~~~~~~------~~~~v~~v~~s~~~~~l~t~~~d~~i~i 448 (768)
...+++..|.. ..+++|+.|..+++||.+.... +..+.. ..-.|++++|+.++.-|+++..|-.|++
T Consensus 283 ~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYL 362 (559)
T KOG1334|consen 283 GLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYL 362 (559)
T ss_pred eeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEE
Confidence 56789999954 5899999999999999864321 222222 2347999999988877777778889999
Q ss_pred EeCC--CC----------ceeEE-eecCCC--cEEEEEE-EeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEE
Q 004214 449 WSIS--DG----------SCLKT-FEGHTS--SVLRASF-LTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWAL 512 (768)
Q Consensus 449 wd~~--~~----------~~~~~-~~~~~~--~v~~~~~-s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l 512 (768)
|.-. .| ..++. ++||.. .|-.+-| -|...|+++|+.-|.|.||+-.+++.+.-+.+...-|+||
T Consensus 363 F~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCL 442 (559)
T KOG1334|consen 363 FNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCL 442 (559)
T ss_pred eccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEecc
Confidence 9532 23 22333 778865 4666665 5788999999999999999999999999888877799999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEcCCH
Q 004214 513 AVGKKTEMFATGGSDALVNLWHDSTA 538 (768)
Q Consensus 513 ~~s~~~~~l~s~~~dg~v~vw~~~~~ 538 (768)
.-+|--..||+.|-|..|+||-..+.
T Consensus 443 EpHP~~PvLAsSGid~DVKIWTP~~~ 468 (559)
T KOG1334|consen 443 EPHPHLPVLASSGIDHDVKIWTPLTA 468 (559)
T ss_pred CCCCCCchhhccCCccceeeecCCcc
Confidence 99999999999999999999987543
No 192
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.77 E-value=8.6e-15 Score=149.28 Aligned_cols=334 Identities=17% Similarity=0.159 Sum_probs=204.7
Q ss_pred EEEeecCCCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEE
Q 004214 2 FALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMA 81 (768)
Q Consensus 2 ~latg~~dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~ 81 (768)
++++-..+|.|.|.|..+.+.+..+..+...-..++|+|||++ +.+++.||.|.++|+.+++.+.++..... ..+++
T Consensus 8 ~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~--~yv~~rdg~vsviD~~~~~~v~~i~~G~~-~~~i~ 84 (369)
T PF02239_consen 8 FYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRY--LYVANRDGTVSVIDLATGKVVATIKVGGN-PRGIA 84 (369)
T ss_dssp EEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSE--EEEEETTSEEEEEETTSSSEEEEEE-SSE-EEEEE
T ss_pred EEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCE--EEEEcCCCeEEEEECCcccEEEEEecCCC-cceEE
Confidence 5567778999999999999999999876555556789999998 66667899999999999999999986544 67899
Q ss_pred EcCCCCEEEEEe-CCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCc
Q 004214 82 ITSDGSTLISAG-RDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERG 160 (768)
Q Consensus 82 fs~d~~~L~s~~-~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 160 (768)
+|+||++++++. .++.+.++|.++.+.++.++........
T Consensus 85 ~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~--------------------------------------- 125 (369)
T PF02239_consen 85 VSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDG--------------------------------------- 125 (369)
T ss_dssp E--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTT---------------------------------------
T ss_pred EcCCCCEEEEEecCCCceeEeccccccceeecccccccccc---------------------------------------
Confidence 999999998775 6899999999999988877643210000
Q ss_pred EEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCC
Q 004214 161 IVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNE 240 (768)
Q Consensus 161 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (768)
..+
T Consensus 126 -----------------------------------------------------------------------------~~~ 128 (369)
T PF02239_consen 126 -----------------------------------------------------------------------------PES 128 (369)
T ss_dssp -----------------------------------------------------------------------------S--
T ss_pred -----------------------------------------------------------------------------cCC
Confidence 011
Q ss_pred ceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeee--eeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCce
Q 004214 241 EILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSY--VLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC 318 (768)
Q Consensus 241 ~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~--~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 318 (768)
.+..+..++....+++..-..+.|.+.|........ .+. ......... +.+++++++++...++.|-++|..+++
T Consensus 129 Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~-~g~~~~D~~--~dpdgry~~va~~~sn~i~viD~~~~k 205 (369)
T PF02239_consen 129 RVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIK-VGRFPHDGG--FDPDGRYFLVAANGSNKIAVIDTKTGK 205 (369)
T ss_dssp -EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE---TTEEEEE--E-TTSSEEEEEEGGGTEEEEEETTTTE
T ss_pred CceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeec-ccccccccc--cCcccceeeecccccceeEEEeeccce
Confidence 122222232222233344445777777766543322 222 122233332 778888877777788899999999998
Q ss_pred EEEeee----cccCcEEEEEEecCCCcEEEEEeC-CCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCC
Q 004214 319 CVGVGT----GHMGAVGAVAFSKKLQNFLVSGSS-DHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDS 393 (768)
Q Consensus 319 ~~~~~~----~~~~~v~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 393 (768)
.+..+. .|..+...+ .+|....+..++.. ...+-........ .......+..........+ .-+..+|+++
T Consensus 206 ~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~~~~~~~ig~~~v~--v~d~~~wkvv~~I~~~G~g-lFi~thP~s~ 281 (369)
T PF02239_consen 206 LVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLGYFAIPLIGTDPVS--VHDDYAWKVVKTIPTQGGG-LFIKTHPDSR 281 (369)
T ss_dssp EEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSSSSEEEEEE--TTT---STTTBTSEEEEEE-SSSS---EE--TT-S
T ss_pred EEEEeeccccccccccccc-cCCCcceEEeeccccceecccccCCccc--cchhhcCeEEEEEECCCCc-ceeecCCCCc
Confidence 776543 355555544 34433222222221 1222222221110 0111245556666655555 7788899999
Q ss_pred EEEEE----eCCCcEEEEeCCCCceEEEEecc-CCCeEEEEEccCCCEEEEeeCC--CcEEEEeCCCCceeEEee
Q 004214 394 LVCTG----SQDRTACVWRLPDLVSVVTFRGH-KRGIWSVEFSPVDQVVITASGD--KTIKIWSISDGSCLKTFE 461 (768)
Q Consensus 394 ~l~~~----~~dg~i~i~d~~~~~~~~~~~~~-~~~v~~v~~s~~~~~l~t~~~d--~~i~iwd~~~~~~~~~~~ 461 (768)
++.+. ...++|.++|..+.+.+..+... ...+..+.|+++|+.+..+..+ +.|.+||..+.+.+..+.
T Consensus 282 ~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 282 YVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp EEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred cEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 99998 44579999999999887777532 2358999999999977665543 369999999999998886
No 193
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.76 E-value=4.5e-17 Score=159.12 Aligned_cols=209 Identities=17% Similarity=0.245 Sum_probs=169.5
Q ss_pred EEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeec
Q 004214 299 LIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAA 378 (768)
Q Consensus 299 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 378 (768)
.++.++.||.+.+.+ ..++.-.....|.+.+.+-.|+|+|. -|++++.||.|++|.-.++ ...++..
T Consensus 77 ~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGt-gLlt~GEDG~iKiWSrsGM-----------LRStl~Q 143 (737)
T KOG1524|consen 77 TLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGA-GLLTAGEDGVIKIWSRSGM-----------LRSTVVQ 143 (737)
T ss_pred eEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCc-eeeeecCCceEEEEeccch-----------HHHHHhh
Confidence 488889999999886 34556667789999999999999987 5899999999999986543 3334455
Q ss_pred cCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeE
Q 004214 379 HGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLK 458 (768)
Q Consensus 379 ~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~ 458 (768)
...+|.|++|.|+.+-++.+ ..+.+.|=.+.....+...+.|.+-|.++.|+|..+++++|++|-..+|||- .|..+.
T Consensus 144 ~~~~v~c~~W~p~S~~vl~c-~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~-~G~~Lf 221 (737)
T KOG1524|consen 144 NEESIRCARWAPNSNSIVFC-QGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA-QGANLF 221 (737)
T ss_pred cCceeEEEEECCCCCceEEe-cCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecc-cCcccc
Confidence 67889999999987766654 3466777777777777788999999999999999999999999999999996 688888
Q ss_pred EeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 004214 459 TFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHD 535 (768)
Q Consensus 459 ~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~ 535 (768)
.-..|..+|++++|.|+ +.++.++. .++++ -....+.|..++||+||..++.|...|.+.+=..
T Consensus 222 ~S~~~ey~ITSva~npd-~~~~v~S~-nt~R~-----------~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ 285 (737)
T KOG1524|consen 222 TSAAEEYAITSVAFNPE-KDYLLWSY-NTARF-----------SSPRVGSIFNLSWSADGTQATCGTSTGQLIVAYA 285 (737)
T ss_pred cCChhccceeeeeeccc-cceeeeee-eeeee-----------cCCCccceEEEEEcCCCceeeccccCceEEEeee
Confidence 88889999999999999 55555543 23331 1234678999999999999999999998866443
No 194
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.76 E-value=9.6e-16 Score=157.54 Aligned_cols=270 Identities=12% Similarity=0.190 Sum_probs=176.9
Q ss_pred EEEEeCCCcEEEEECCC-ce--eeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCC-CceE--EEeeecccC
Q 004214 255 LAVATNIEQVQVYDLSS-MS--CSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSE-SRCC--VGVGTGHMG 328 (768)
Q Consensus 255 l~~~~~~~~i~i~d~~~-~~--~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~--~~~~~~~~~ 328 (768)
+++...++.|.+|++.+ +. .+..+.. .+....+. +.++++.+++++..++.|.+|++. ++.. ..... ..+
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~~-~~~~~~l~--~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~ 80 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVDV-PGQVQPMV--ISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPG 80 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEec-CCCCccEE--ECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCC
Confidence 34446689999999964 32 3344432 23445555 667777755555668999999986 3332 22222 234
Q ss_pred cEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEe-CCCcEEEE
Q 004214 329 AVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGS-QDRTACVW 407 (768)
Q Consensus 329 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~ 407 (768)
....++++|+++.++++...++.|.+|++....... ..... ..+.....+++++|+++++++++ .++.|.+|
T Consensus 81 ~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~------~~~~~-~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~ 153 (330)
T PRK11028 81 SPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPV------APIQI-IEGLEGCHSANIDPDNRTLWVPCLKEDRIRLF 153 (330)
T ss_pred CceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCC------Cceee-ccCCCcccEeEeCCCCCEEEEeeCCCCEEEEE
Confidence 567899999988555555568999999986321110 01111 11223467788999999886655 56899999
Q ss_pred eCCCCceEEE-----Ee-ccCCCeEEEEEccCCCEEEEeeC-CCcEEEEeCCC--C--ceeEEeecC------CCcEEEE
Q 004214 408 RLPDLVSVVT-----FR-GHKRGIWSVEFSPVDQVVITASG-DKTIKIWSISD--G--SCLKTFEGH------TSSVLRA 470 (768)
Q Consensus 408 d~~~~~~~~~-----~~-~~~~~v~~v~~s~~~~~l~t~~~-d~~i~iwd~~~--~--~~~~~~~~~------~~~v~~~ 470 (768)
|+.+...+.. .. ........++|+|+|++++++.. +++|.+|++.. + +.+..+..+ ......+
T Consensus 154 d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i 233 (330)
T PRK11028 154 TLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADI 233 (330)
T ss_pred EECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeE
Confidence 9976332211 11 12344678999999999988876 89999999973 3 234444322 1223468
Q ss_pred EEEeCCCEEEEEeC-CCcEEEEECCCCe----EEEEeccCCCcEEEEEEcCCCCEEEEEeC-CCcEEEEEcC
Q 004214 471 SFLTRGAQIVSCGA-DGLVKLWTVRTGE----CIATYDKHEDKIWALAVGKKTEMFATGGS-DALVNLWHDS 536 (768)
Q Consensus 471 ~~s~~~~~l~s~~~-dg~i~iwd~~~~~----~~~~~~~~~~~v~~l~~s~~~~~l~s~~~-dg~v~vw~~~ 536 (768)
.|+|+|++|+++.. ++.|.+|++.+.. .+..... ......+.++|+|++|+++.. ++.|.+|+++
T Consensus 234 ~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 234 HITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred EECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 89999999998865 7899999986533 2233221 124557899999999998775 8999999875
No 195
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.76 E-value=9.3e-17 Score=145.26 Aligned_cols=253 Identities=15% Similarity=0.256 Sum_probs=184.1
Q ss_pred ceEEEeeeeecCCCEEEEEEeC----CCeEEEEeC--CCceEEEee-ecccCcEEEEEEecCCC----cEEEEEeCCCeE
Q 004214 284 IVLCLDTCALSSGKILIVTGSK----DNSVRLWDS--ESRCCVGVG-TGHMGAVGAVAFSKKLQ----NFLVSGSSDHTI 352 (768)
Q Consensus 284 ~v~~l~~~~~~~~~~~l~~~~~----dg~i~iwd~--~~~~~~~~~-~~~~~~v~~~~~~~~~~----~~l~s~~~dg~i 352 (768)
++.++.|...++.+..++.|+- .+.|.|..+ .+++.+... ..|.-+++.+.|.|+.. .+|++++ ..+
T Consensus 46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~L 123 (364)
T KOG0290|consen 46 PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS--DFL 123 (364)
T ss_pred ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhccc--CeE
Confidence 4455554444555666787763 355665543 344444322 35888999999999853 3455443 479
Q ss_pred EEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCc---eEEEEeccCCCeEEE
Q 004214 353 KVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQDRTACVWRLPDLV---SVVTFRGHKRGIWSV 428 (768)
Q Consensus 353 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~v~~v 428 (768)
++|.+.......... ..........+..+++++.|+. +.+++.+++-|-+..|||++++. ....+-.|...|..+
T Consensus 124 RlWri~~ee~~~~~~-~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DI 202 (364)
T KOG0290|consen 124 RLWRIGDEESRVELQ-SVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDI 202 (364)
T ss_pred EEEeccCcCCceehh-hhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEE
Confidence 999987432211111 1111122345678999999998 77899999999999999999863 355677899999999
Q ss_pred EEccCC-CEEEEeeCCCcEEEEeCCCCceeEEe---ecCCCcEEEEEEEeC-CCEEEEEeCCC-cEEEEECCC-CeEEEE
Q 004214 429 EFSPVD-QVVITASGDKTIKIWSISDGSCLKTF---EGHTSSVLRASFLTR-GAQIVSCGADG-LVKLWTVRT-GECIAT 501 (768)
Q Consensus 429 ~~s~~~-~~l~t~~~d~~i~iwd~~~~~~~~~~---~~~~~~v~~~~~s~~-~~~l~s~~~dg-~i~iwd~~~-~~~~~~ 501 (768)
+|...+ +.+|+.+.||.||+||++..+.-..+ .....+..+++|+++ -+++++-..|. .|.|.|++. ..++.+
T Consensus 203 af~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~ 282 (364)
T KOG0290|consen 203 AFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVAR 282 (364)
T ss_pred EeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceeh
Confidence 999865 68899999999999999876533322 223567889999874 56788776655 799999986 468899
Q ss_pred eccCCCcEEEEEEcCC-CCEEEEEeCCCcEEEEEcCCHH
Q 004214 502 YDKHEDKIWALAVGKK-TEMFATGGSDALVNLWHDSTAA 539 (768)
Q Consensus 502 ~~~~~~~v~~l~~s~~-~~~l~s~~~dg~v~vw~~~~~~ 539 (768)
+.+|.+.|++++|.|. ...|+++|.|..+.+||+....
T Consensus 283 L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~ 321 (364)
T KOG0290|consen 283 LRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMP 321 (364)
T ss_pred hhcCcccccceEecCCCCceeeecCCcceEEEEeccccc
Confidence 9999999999999995 6689999999999999987643
No 196
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.76 E-value=1.6e-16 Score=167.52 Aligned_cols=195 Identities=19% Similarity=0.234 Sum_probs=148.9
Q ss_pred eecCCCEEEEEEeCCCeEEEEeCCCceEEEeee-cccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCcccccc
Q 004214 292 ALSSGKILIVTGSKDNSVRLWDSESRCCVGVGT-GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNL 370 (768)
Q Consensus 292 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 370 (768)
|....+. |++++.-..|+|||......+..+. +....|+++.-+-...+++++|..||.|++||.+.....
T Consensus 1173 WqQ~~G~-Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~d------- 1244 (1387)
T KOG1517|consen 1173 WQQQSGH-LLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPD------- 1244 (1387)
T ss_pred hhhhCCe-EEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCcc-------
Confidence 4444555 5555557899999999877766544 455667888777666679999999999999999865322
Q ss_pred ceeeEeeccCCC--eEEEEEccCCC-EEEEEeCCCcEEEEeCCCCceE--EEEeccC--C-CeEEEEEccCCCEEEEeeC
Q 004214 371 KAKAVVAAHGKD--INSLAVAPNDS-LVCTGSQDRTACVWRLPDLVSV--VTFRGHK--R-GIWSVEFSPVDQVVITASG 442 (768)
Q Consensus 371 ~~~~~~~~~~~~--i~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~--~-~v~~v~~s~~~~~l~t~~~ 442 (768)
........|... |..+.+.++|- .|++|+.||.|++||++..... ..+..|. + ..+++..+++..++|+|+.
T Consensus 1245 s~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~ 1324 (1387)
T KOG1517|consen 1245 SLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA 1324 (1387)
T ss_pred ccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc
Confidence 245566778777 99999999665 4999999999999999874222 2222232 3 5999999999999999999
Q ss_pred CCcEEEEeCCCCceeEEeec-------CCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCC
Q 004214 443 DKTIKIWSISDGSCLKTFEG-------HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTG 496 (768)
Q Consensus 443 d~~i~iwd~~~~~~~~~~~~-------~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 496 (768)
+.|+||++ .|+.+..+.. ..+.+.+++|+|..-+|++|+.|.+|.||....+
T Consensus 1325 -q~ikIy~~-~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1325 -QLIKIYSL-SGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred -ceEEEEec-ChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence 99999998 4555555442 2356799999999999999999999999987554
No 197
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.76 E-value=1.6e-16 Score=149.79 Aligned_cols=236 Identities=21% Similarity=0.318 Sum_probs=177.0
Q ss_pred cCCCCEEEEE---eCCCcEEEEECC-Ccee---eeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCc----
Q 004214 249 GEEEQYLAVA---TNIEQVQVYDLS-SMSC---SYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR---- 317 (768)
Q Consensus 249 ~~~~~~l~~~---~~~~~i~i~d~~-~~~~---~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---- 317 (768)
.-+..++|+. +..|...+.-+. +|+. .-.+.+|+.+|..++|| |-+...||+|+.|.+|.||.+..+
T Consensus 41 avNPkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~--PfnD~vIASgSeD~~v~vW~IPe~~l~~ 118 (472)
T KOG0303|consen 41 AVNPKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWC--PFNDCVIASGSEDTKVMVWQIPENGLTR 118 (472)
T ss_pred ccCCceEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccC--ccCCceeecCCCCceEEEEECCCccccc
Confidence 3455666653 233344444332 2322 22467999999999955 445556999999999999997643
Q ss_pred ---eEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCE
Q 004214 318 ---CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSL 394 (768)
Q Consensus 318 ---~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 394 (768)
+++..+.+|...|..++|+|...++|++++.|.+|.+|++..+. .... ..|.+-|.++.|+.||.+
T Consensus 119 ~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tge----------ali~-l~hpd~i~S~sfn~dGs~ 187 (472)
T KOG0303|consen 119 DLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGE----------ALIT-LDHPDMVYSMSFNRDGSL 187 (472)
T ss_pred CcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCc----------eeee-cCCCCeEEEEEeccCCce
Confidence 45677889999999999999999999999999999999998653 2222 339999999999999999
Q ss_pred EEEEeCCCcEEEEeCCCCceEEEEeccCCC-eEEEEEccCCCEEEEee---CCCcEEEEeCCCCc---eeEEeecCCCcE
Q 004214 395 VCTGSQDRTACVWRLPDLVSVVTFRGHKRG-IWSVEFSPVDQVVITAS---GDKTIKIWSISDGS---CLKTFEGHTSSV 467 (768)
Q Consensus 395 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-v~~v~~s~~~~~l~t~~---~d~~i~iwd~~~~~---~~~~~~~~~~~v 467 (768)
+++.+.|+.|+|||.++++.+..-.+|.+. -..+.|-.+|.++-||. .+.++-+||..+-+ ....+. ..+.|
T Consensus 188 l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGv 266 (472)
T KOG0303|consen 188 LCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGV 266 (472)
T ss_pred eeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEec-cCCce
Confidence 999999999999999999999988888763 44566777888555553 46889999976543 334444 34556
Q ss_pred EEEEEEeCCCEEEEEe-CCCcEEEEECCCCeE
Q 004214 468 LRASFLTRGAQIVSCG-ADGLVKLWTVRTGEC 498 (768)
Q Consensus 468 ~~~~~s~~~~~l~s~~-~dg~i~iwd~~~~~~ 498 (768)
.---|.+|.+.+..++ .|+.|+.|.+.+..+
T Consensus 267 l~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P 298 (472)
T KOG0303|consen 267 LLPFYDPDTSIVYLCGKGDSSIRYFEITNEPP 298 (472)
T ss_pred EEeeecCCCCEEEEEecCCcceEEEEecCCCc
Confidence 6566778888776555 599999999876553
No 198
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=1.6e-17 Score=160.67 Aligned_cols=305 Identities=20% Similarity=0.249 Sum_probs=222.6
Q ss_pred EEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhccc
Q 004214 67 VATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKR 146 (768)
Q Consensus 67 ~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (768)
...|..|.+.|..+.|...|..|+|++.|..|.+|||..++....+..
T Consensus 135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~S-------------------------------- 182 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFES-------------------------------- 182 (559)
T ss_pred hhcccCCCCccceeeecccCceeeccCccceEEeehhhccCccccccc--------------------------------
Confidence 456788999999999999999999999999999999988765544431
Q ss_pred CCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccc
Q 004214 147 RSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKK 226 (768)
Q Consensus 147 ~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~ 226 (768)
T Consensus 183 -------------------------------------------------------------------------------- 182 (559)
T KOG1334|consen 183 -------------------------------------------------------------------------------- 182 (559)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeEEEeeecccCCceeEEEEec-CCCCEEEEEeCCCcEEEEECCC-cee--eeeeeCCccceEEEeeeeecCCCEEEEE
Q 004214 227 MELILSKRLVGYNEEILDLKFLG-EEEQYLAVATNIEQVQVYDLSS-MSC--SYVLAGHSEIVLCLDTCALSSGKILIVT 302 (768)
Q Consensus 227 ~~~~~~~~~~~~~~~i~~~~~~~-~~~~~l~~~~~~~~i~i~d~~~-~~~--~~~~~~~~~~v~~l~~~~~~~~~~~l~~ 302 (768)
||...|....|.| .+...+++++.||++++=.+.. +.+ ...+..|.++|.-++ ..|....-|.+
T Consensus 183 ----------GH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhkla--v~p~sp~~f~S 250 (559)
T KOG1334|consen 183 ----------GHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLA--VEPDSPKPFLS 250 (559)
T ss_pred ----------ccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecccccCccceee--ecCCCCCcccc
Confidence 1122222222322 2334566666677777655432 222 345677899998887 66666667999
Q ss_pred EeCCCeEEEEeCCCceEEEeee---cccC---cEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccc--cccceee
Q 004214 303 GSKDNSVRLWDSESRCCVGVGT---GHMG---AVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQP--MNLKAKA 374 (768)
Q Consensus 303 ~~~dg~i~iwd~~~~~~~~~~~---~~~~---~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~~~ 374 (768)
++.|+.+.-+|++.+.+...+. .+.. ...+++..|...+.+++++.|-.+++||.+......... ....+..
T Consensus 251 ~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~h 330 (559)
T KOG1334|consen 251 CGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHH 330 (559)
T ss_pred cccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCcc
Confidence 9999999999998765443332 2333 567889999888899999999999999988654321111 1111222
Q ss_pred EeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC--C----------ceE-EEEeccCC--CeEEEE-EccCCCEEE
Q 004214 375 VVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPD--L----------VSV-VTFRGHKR--GIWSVE-FSPVDQVVI 438 (768)
Q Consensus 375 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~--~----------~~~-~~~~~~~~--~v~~v~-~s~~~~~l~ 438 (768)
........|++++|+.++.-+.++-.|-.|++|.-.- + ..+ ..++||.. .|..+- |-|...+++
T Consensus 331 l~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVv 410 (559)
T KOG1334|consen 331 LVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVV 410 (559)
T ss_pred ccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEE
Confidence 2223456799999998888888888888999995421 2 122 23778865 355554 567889999
Q ss_pred EeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCC
Q 004214 439 TASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRT 495 (768)
Q Consensus 439 t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 495 (768)
+|+.-|.|.||+-.+++.++-+++...-|+|+.=+|.-..||++|-|..|+||...+
T Consensus 411 SGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~ 467 (559)
T KOG1334|consen 411 SGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLT 467 (559)
T ss_pred ecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecCCc
Confidence 999999999999999999999998888999999999999999999999999997543
No 199
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.75 E-value=9.2e-15 Score=149.06 Aligned_cols=324 Identities=15% Similarity=0.089 Sum_probs=202.1
Q ss_pred EEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecC
Q 004214 46 LLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIP 125 (768)
Q Consensus 46 ~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~ 125 (768)
++++-..+|.|.|.|..+.+.+.++......-..+.|+|||+++++++.||.|.++|+.+++.+.+++.......+++++
T Consensus 8 ~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~ 87 (369)
T PF02239_consen 8 FYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSP 87 (369)
T ss_dssp EEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--
T ss_pred EEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcC
Confidence 45667778999999999999999998765555567899999999999999999999999999888887666555555555
Q ss_pred CCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCce
Q 004214 126 PGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGL 205 (768)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 205 (768)
+|.
T Consensus 88 DG~----------------------------------------------------------------------------- 90 (369)
T PF02239_consen 88 DGK----------------------------------------------------------------------------- 90 (369)
T ss_dssp TTT-----------------------------------------------------------------------------
T ss_pred CCC-----------------------------------------------------------------------------
Confidence 443
Q ss_pred EEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEE-EeCCCcEEEEECCCceeeeeeeCC---
Q 004214 206 LCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAV-ATNIEQVQVYDLSSMSCSYVLAGH--- 281 (768)
Q Consensus 206 ~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~-~~~~~~i~i~d~~~~~~~~~~~~~--- 281 (768)
++++ ....+.+.++|..+.+.++.+...
T Consensus 91 ------------------------------------------------~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~ 122 (369)
T PF02239_consen 91 ------------------------------------------------YVYVANYEPGTVSVIDAETLEPVKTIPTGGMP 122 (369)
T ss_dssp ------------------------------------------------EEEEEEEETTEEEEEETTT--EEEEEE--EE-
T ss_pred ------------------------------------------------EEEEEecCCCceeEeccccccceeeccccccc
Confidence 3332 233566777777776666655432
Q ss_pred ----ccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEE-eeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEe
Q 004214 282 ----SEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVG-VGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS 356 (768)
Q Consensus 282 ----~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd 356 (768)
...+..+. ..+....++++--..+.|.+.|......+. .............|+|+++.++++...+..|-++|
T Consensus 123 ~~~~~~Rv~aIv--~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD 200 (369)
T PF02239_consen 123 VDGPESRVAAIV--ASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVID 200 (369)
T ss_dssp TTTS---EEEEE--E-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEE
T ss_pred ccccCCCceeEE--ecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEe
Confidence 23344553 445555545555555889888987654332 22223455678899999886667677788999999
Q ss_pred CCCCCCCCccccccceeeEeeccCCCeEEE-------EE--ccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEE
Q 004214 357 FDGLSDDAEQPMNLKAKAVVAAHGKDINSL-------AV--APNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWS 427 (768)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-------~~--s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~ 427 (768)
............ -...|..+...+ .| ...+...++.-....+.+||..+.+.+..+.....+ .-
T Consensus 201 ~~~~k~v~~i~~------g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lF 273 (369)
T PF02239_consen 201 TKTGKLVALIDT------GKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LF 273 (369)
T ss_dssp TTTTEEEEEEE-------SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---
T ss_pred eccceEEEEeec------cccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ce
Confidence 875421110000 001122222211 12 222333323333346678999999999999987777 78
Q ss_pred EEEccCCCEEEEe----eCCCcEEEEeCCCCceeEEeecC-CCcEEEEEEEeCCCEEEEEeCC--CcEEEEECCCCeEEE
Q 004214 428 VEFSPVDQVVITA----SGDKTIKIWSISDGSCLKTFEGH-TSSVLRASFLTRGAQIVSCGAD--GLVKLWTVRTGECIA 500 (768)
Q Consensus 428 v~~s~~~~~l~t~----~~d~~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~s~~~d--g~i~iwd~~~~~~~~ 500 (768)
+..+|+++++.+. ...++|.++|.++.+.+.++... ...+..+.|+++|+++..+..+ |.|.+||..+.+.+.
T Consensus 274 i~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~ 353 (369)
T PF02239_consen 274 IKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKK 353 (369)
T ss_dssp EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEE
T ss_pred eecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEE
Confidence 8889999999988 45689999999999888887632 2358899999999977655543 369999999999998
Q ss_pred Eec
Q 004214 501 TYD 503 (768)
Q Consensus 501 ~~~ 503 (768)
.+.
T Consensus 354 ~i~ 356 (369)
T PF02239_consen 354 RIP 356 (369)
T ss_dssp EEE
T ss_pred EEE
Confidence 886
No 200
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.75 E-value=1e-14 Score=137.01 Aligned_cols=270 Identities=17% Similarity=0.207 Sum_probs=187.1
Q ss_pred CCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCC--CeEEEEeCCCceEEEeeeccc
Q 004214 250 EEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKD--NSVRLWDSESRCCVGVGTGHM 327 (768)
Q Consensus 250 ~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~ 327 (768)
.+...|.+|+.+| .++|+........... .+.+.-+...|++ . +++..+.+ ..++++++..+..+..+. ..
T Consensus 15 qd~~~lsvGs~~G-yk~~~~~~~~k~~~~~--~~~~~IvEmLFSS-S--LvaiV~~~qpr~Lkv~~~Kk~~~ICe~~-fp 87 (391)
T KOG2110|consen 15 QDSTLLSVGSKDG-YKIFSCSPFEKCFSKD--TEGVSIVEMLFSS-S--LVAIVSIKQPRKLKVVHFKKKTTICEIF-FP 87 (391)
T ss_pred cceeEEEccCCCc-eeEEecCchHHhhccc--CCCeEEEEeeccc-c--eeEEEecCCCceEEEEEcccCceEEEEe-cC
Confidence 3555666676654 4667766544322211 1222222211332 2 34444333 469999999888777665 45
Q ss_pred CcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEe--CCCcEE
Q 004214 328 GAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGS--QDRTAC 405 (768)
Q Consensus 328 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~dg~i~ 405 (768)
.+|.++.++.+ .|+++-.+. |.+||++.... .........+...+.++++++.+.++|.-+ ..|.|.
T Consensus 88 t~IL~VrmNr~---RLvV~Lee~-IyIydI~~Mkl-------LhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~ 156 (391)
T KOG2110|consen 88 TSILAVRMNRK---RLVVCLEES-IYIYDIKDMKL-------LHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVV 156 (391)
T ss_pred CceEEEEEccc---eEEEEEccc-EEEEeccccee-------ehhhhccCCCccceEeeccCCCCceEEecCCCCCceEE
Confidence 67889999876 456555544 99999986531 112222234555677777777777888643 468999
Q ss_pred EEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCc-EEEEeCCCCceeEEeecC--CCcEEEEEEEeCCCEEEEE
Q 004214 406 VWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKT-IKIWSISDGSCLKTFEGH--TSSVLRASFLTRGAQIVSC 482 (768)
Q Consensus 406 i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~-i~iwd~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~s~ 482 (768)
+||+.+.+++..+..|.+++.+++|+++|.+|||++..|+ ||||.+.+|+.+..|+.. ...|.+++|+|++++|++.
T Consensus 157 l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~s 236 (391)
T KOG2110|consen 157 LFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAAS 236 (391)
T ss_pred EEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEe
Confidence 9999999999999999999999999999999999999987 699999999999999743 3467899999999999999
Q ss_pred eCCCcEEEEECCCCeE-------------------------------------EEEeccCCC---cEEEEEEcCCCCEEE
Q 004214 483 GADGLVKLWTVRTGEC-------------------------------------IATYDKHED---KIWALAVGKKTEMFA 522 (768)
Q Consensus 483 ~~dg~i~iwd~~~~~~-------------------------------------~~~~~~~~~---~v~~l~~s~~~~~l~ 522 (768)
+..++|+||.+..-.. ..+.....+ .+..+.-.+...++.
T Consensus 237 S~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~ 316 (391)
T KOG2110|consen 237 SNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVL 316 (391)
T ss_pred cCCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEE
Confidence 9999999998753210 000000111 233333335778999
Q ss_pred EEeCCCcEEEEEcCC
Q 004214 523 TGGSDALVNLWHDST 537 (768)
Q Consensus 523 s~~~dg~v~vw~~~~ 537 (768)
.++.||.++.|.+..
T Consensus 317 vas~dG~~y~y~l~~ 331 (391)
T KOG2110|consen 317 VASYDGHLYSYRLPP 331 (391)
T ss_pred EEEcCCeEEEEEcCC
Confidence 999999999999875
No 201
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=9.3e-15 Score=147.86 Aligned_cols=572 Identities=16% Similarity=0.157 Sum_probs=331.0
Q ss_pred EEEeecCCCcEEEEECCCCE---------------EEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCee
Q 004214 2 FALLEGADRKVLVWDVDGGF---------------CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKC 66 (768)
Q Consensus 2 ~latg~~dg~i~vwd~~~~~---------------~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~ 66 (768)
|+|+||.||.++|..+.+.. .-++|.||.+.|..+.|+.+.+. |-|...+|.|.||-+-.|.-
T Consensus 28 yIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QK--LTtSDt~GlIiVWmlykgsW 105 (1189)
T KOG2041|consen 28 YIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQK--LTTSDTSGLIIVWMLYKGSW 105 (1189)
T ss_pred eEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccccc--ccccCCCceEEEEeeecccH
Confidence 79999999999999885421 22578899999999999987776 99999999999999988765
Q ss_pred EEEec--CccceeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhc
Q 004214 67 VATLD--KHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKK 144 (768)
Q Consensus 67 ~~~l~--~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (768)
...+. ...+.|.+|+|+.||..+..+-.||.|.|=.++..+.-..--.......+.++++..
T Consensus 106 ~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~---------------- 169 (1189)
T KOG2041|consen 106 CEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLE---------------- 169 (1189)
T ss_pred HHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccHH----------------
Confidence 44432 245679999999999999999999999887776544322111112233455555543
Q ss_pred ccCCcceEEEEeeCCcEEEEEEcCCceeeeecC-CceeecccccCcccce--------eEEEEccCCCceEEEEecCeEE
Q 004214 145 KRRSLEIHFITVGERGIVRMWNADSACLYEQKS-SDVTISFEMDDSKRGF--------TAATVLPSNQGLLCVTADQQLL 215 (768)
Q Consensus 145 ~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~--------~~~~~~~~~~~l~~~~~dg~i~ 215 (768)
.++.+-..|...++|..+.-...... .....+.........+ ......|+...+++...+|.+.
T Consensus 170 -------~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~Q 242 (1189)
T KOG2041|consen 170 -------QALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQ 242 (1189)
T ss_pred -------HHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceeh
Confidence 22333445667777766551100000 0000000000000001 1112346778888899999999
Q ss_pred EEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCC---------CcEEEEECCCceeeeeeeCCccceE
Q 004214 216 LYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNI---------EQVQVYDLSSMSCSYVLAGHSEIVL 286 (768)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~---------~~i~i~d~~~~~~~~~~~~~~~~v~ 286 (768)
+......+.+.. ....-.+....|++ ++..||+++.+ +.|.+|. .-|..+..++.....|+
T Consensus 243 iMR~eND~~Pvv--------~dtgm~~vgakWnh-~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It 312 (1189)
T KOG2041|consen 243 IMRSENDPEPVV--------VDTGMKIVGAKWNH-NGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCIT 312 (1189)
T ss_pred hhhhcCCCCCeE--------EecccEeecceecC-CCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCceee
Confidence 887766554321 11123567778874 77888887764 2444444 34566667777778888
Q ss_pred EEeeeeecCCCEEEEEEeCCCeEEEEeCCC--------ceEEEeeecccCcEEEEEEe---------------------c
Q 004214 287 CLDTCALSSGKILIVTGSKDNSVRLWDSES--------RCCVGVGTGHMGAVGAVAFS---------------------K 337 (768)
Q Consensus 287 ~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~--------~~~~~~~~~~~~~v~~~~~~---------------------~ 337 (768)
+++ |-..+-. ++.+ -|+.|.+=+++. ...+........+-.++.|- .
T Consensus 313 ~ls--WEg~gLr-iA~A-vdsfiyfanIRP~ykWgy~e~TvVy~y~~~e~p~y~i~Fwdtk~nek~vK~V~~~~~~a~~~ 388 (1189)
T KOG2041|consen 313 GLS--WEGTGLR-IAIA-VDSFIYFANIRPEYKWGYIEETVVYVYQKEELPQYGIMFWDTKTNEKTVKTVTHFENMAFYR 388 (1189)
T ss_pred eeE--EcCCceE-EEEE-ecceEEEEeecccceEEEeeeEEEEEEccCCCcceEEEEEecccChhhhhhhcceeehheec
Confidence 885 4333332 4433 366666655443 22333333333333343332 2
Q ss_pred CCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeE-------eeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 004214 338 KLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAV-------VAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLP 410 (768)
Q Consensus 338 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-------~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~ 410 (768)
+ ...|+.-..+|.+.-++.-... . ..-.... +...-..|.-.-..-++..++.++.+ .+.+|...
T Consensus 389 e-hCvL~~~~d~~~i~e~s~le~~--~----~~~~l~LCNSIGT~lD~kytdirP~Fv~vn~~~vviAS~e-~~~iWhy~ 460 (1189)
T KOG2041|consen 389 E-HCVLINRQDDGVIPEYSTLENR--S----RVYFLQLCNSIGTSLDYKYTDIRPKFVCVNGICVVIASEE-RYFIWHYV 460 (1189)
T ss_pred c-cEEEEeccccCCCcchhhhhcc--c----ceEEEeeecccCCcCCCCcceeeeeEEEecceEEEEeccc-cEEEEEEe
Confidence 2 1122233333333322110000 0 0000000 00001122222233366677777765 46777643
Q ss_pred CCc--------------------------------eEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeE
Q 004214 411 DLV--------------------------------SVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLK 458 (768)
Q Consensus 411 ~~~--------------------------------~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~ 458 (768)
..+ ...++.|...+|.+++.+ .++|..+-..|.|.-|.+.+.....
T Consensus 461 ~pK~~s~l~~~k~rkegr~h~Ddtp~ga~d~~l~ys~kt~~G~~DpICAl~~s--dk~l~vareSG~I~rySl~nv~l~n 538 (1189)
T KOG2041|consen 461 LPKFNSVLAGVKIRKEGRFHGDDTPEGAQDRTLEYSTKTLLGSKDPICALCIS--DKFLMVARESGGIYRYSLNNVVLTN 538 (1189)
T ss_pred ccchhhhhhhhhhcccccccCCCCccchhhceeeccceeeccCCCcceeeeec--ceEEEEEeccCceEEEEecceeeee
Confidence 211 013444567788888887 7899999999999999998887776
Q ss_pred EeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECC---CCeEEE-EeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004214 459 TFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVR---TGECIA-TYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 534 (768)
Q Consensus 459 ~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~---~~~~~~-~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~ 534 (768)
... -+..+.++++.-+...++.-..-|.+.+.|+. +|..+. .+......||++.|..|...|++-.....+.|++
T Consensus 539 ~y~-~n~~~y~~~lNCnstRlAiId~~gv~tf~dLd~d~~g~ql~~~~~~errDVWd~~Wa~dNp~llAlmeKtrmyifr 617 (1189)
T KOG2041|consen 539 SYP-VNPSIYSIKLNCNSTRLAIIDLVGVVTFQDLDYDFDGDQLKLIYTSERRDVWDYEWAQDNPNLLALMEKTRMYIFR 617 (1189)
T ss_pred ccc-cCchheeEeeccCcchhhhhhhhceeeeeecccccCcceeeeeehhhhhhhhhhhhccCCchHHhhhhhceEEEec
Confidence 665 56778899999888899988888999998876 344444 3344556799999998877666665555566665
Q ss_pred cCCHHHHH--------------------HHHHHHH---------HHHHhhhHHHHhhcccchHHHHHHHhhcCCchhHHH
Q 004214 535 DSTAAERE--------------------EAFRKEE---------EAVLRGQELENAVLDADYTKAIQVAFELRRPHKLFE 585 (768)
Q Consensus 535 ~~~~~~~~--------------------~~~~~~~---------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 585 (768)
-+.+++.. +.....+ -++...+...+++......+|.+..-...+| +++.
T Consensus 618 gndpeEp~s~sGyIc~FedLeitsVlld~Il~~pE~pnk~~ii~~~ikslrD~~~Lve~vgledA~qfiEdnPHp-rLWr 696 (1189)
T KOG2041|consen 618 GNDPEEPSSVSGYICLFEDLEITSVLLDKILLTPENPNKTCIIEVMIKSLRDVMNLVEAVGLEDAIQFIEDNPHP-RLWR 696 (1189)
T ss_pred CcCccccccccceEEEeeceEEEEEEHhhHhcCcCCCCcceEEEEEehhhhhHHHHHHHhchHHHHHHHhcCCch-HHHH
Confidence 54433221 1111100 0122234556667777777888766655555 4555
Q ss_pred HHHHHHhchhhHHHHHHHHhhcCHHHHHHHHHHHHHHhc
Q 004214 586 LFASVCRKREAELQIEKALHALGKEEIRQLLEYVREWNT 624 (768)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~ 624 (768)
++....-.+..-...+.+.-++....-.+|.++|+....
T Consensus 697 llAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s 735 (1189)
T KOG2041|consen 697 LLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHS 735 (1189)
T ss_pred HHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhh
Confidence 554332222222245556655555555566655554443
No 202
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.74 E-value=2.5e-15 Score=150.01 Aligned_cols=190 Identities=22% Similarity=0.290 Sum_probs=155.0
Q ss_pred CCCEEEEEEeCCCeEEEEeCCCceEEEeeecc---cCcEEEEEEe------c-------------CCCcEEEEEeCCCeE
Q 004214 295 SGKILIVTGSKDNSVRLWDSESRCCVGVGTGH---MGAVGAVAFS------K-------------KLQNFLVSGSSDHTI 352 (768)
Q Consensus 295 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~v~~~~~~------~-------------~~~~~l~s~~~dg~i 352 (768)
+...++|....||.+++|+...++....+... ++..++..|. | .+...++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 33446999999999999999998877766532 2333444442 2 123478889999999
Q ss_pred EEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEcc
Q 004214 353 KVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSP 432 (768)
Q Consensus 353 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~ 432 (768)
.+|++..+ ..........|...|+++.++.+-..|.+++.|+.+..|+..+...++...+....+.+++++|
T Consensus 83 ~~ys~~~g--------~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~ 154 (541)
T KOG4547|consen 83 LLYSVAGG--------EITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISP 154 (541)
T ss_pred EEEEecCC--------eEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcC
Confidence 99998865 3334444467999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeC-----CCEEEEEeC-CCcEEEEECC
Q 004214 433 VDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTR-----GAQIVSCGA-DGLVKLWTVR 494 (768)
Q Consensus 433 ~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~-----~~~l~s~~~-dg~i~iwd~~ 494 (768)
||..+++|+ ++|++||+++++.+.+|.||.++|.++.|..+ |.+++++.. +..+.+|-+.
T Consensus 155 D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~ 220 (541)
T KOG4547|consen 155 DGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVE 220 (541)
T ss_pred CCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEE
Confidence 999999988 78999999999999999999999999999887 677766543 5567777654
No 203
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.74 E-value=5.6e-16 Score=166.16 Aligned_cols=362 Identities=16% Similarity=0.173 Sum_probs=215.6
Q ss_pred EECCCCeeEEEecCccceeEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCcccccccc
Q 004214 59 WDLLAKKCVATLDKHFSRVTSMAITSDG-STLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSY 137 (768)
Q Consensus 59 Wd~~~~~~~~~l~~h~~~V~~l~fs~d~-~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 137 (768)
|++ .|..+..+..|+..|..++.++.. .+++|||.||+|++|+...-..-.
T Consensus 1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~--------------------------- 1085 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG--------------------------- 1085 (1431)
T ss_pred CCc-cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCc---------------------------
Confidence 665 788999999999999999988755 999999999999999986532110
Q ss_pred chhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEE
Q 004214 138 NQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLY 217 (768)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~ 217 (768)
+.-.....|+..+ ..+..+...+.++.+++++.||.+.+.
T Consensus 1086 -------------------~s~rS~ltys~~~---------------------sr~~~vt~~~~~~~~Av~t~DG~v~~~ 1125 (1431)
T KOG1240|consen 1086 -------------------GSARSELTYSPEG---------------------SRVEKVTMCGNGDQFAVSTKDGSVRVL 1125 (1431)
T ss_pred -------------------ceeeeeEEEeccC---------------------CceEEEEeccCCCeEEEEcCCCeEEEE
Confidence 0000111121111 233455566777777777788888777
Q ss_pred eeccCcccceeeEEEeeec-ccCCceeEE-EEecCCCC-EEEEEeCCCcEEEEECCCceeeeeee--CCccceEEEeeee
Q 004214 218 TTVEVPEKKMELILSKRLV-GYNEEILDL-KFLGEEEQ-YLAVATNIEQVQVYDLSSMSCSYVLA--GHSEIVLCLDTCA 292 (768)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~-~~~~~i~~~-~~~~~~~~-~l~~~~~~~~i~i~d~~~~~~~~~~~--~~~~~v~~l~~~~ 292 (768)
++.............+... ...+.+.+| +|...... .++.++..+.|..||+........++ ...+.|++++ .
T Consensus 1126 ~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~--i 1203 (1431)
T KOG1240|consen 1126 RIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIV--I 1203 (1431)
T ss_pred EccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEE--e
Confidence 7766322222222222111 122334443 44444444 78889999999999998877665543 3457788875 6
Q ss_pred ecCCCEEEEEEeCCCeEEEEeCCCceEEEeee-cccCcEEEEEEecCCC--cEEEEEe--CCCeEEEEeCCCCCCCCccc
Q 004214 293 LSSGKILIVTGSKDNSVRLWDSESRCCVGVGT-GHMGAVGAVAFSKKLQ--NFLVSGS--SDHTIKVWSFDGLSDDAEQP 367 (768)
Q Consensus 293 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~--~~l~s~~--~dg~i~iwd~~~~~~~~~~~ 367 (768)
.+.+.+ +++|+..|.+.+||++-+.++.... ++..++..+..+|-.+ ...++++ ..+.|.+|++..+.......
T Consensus 1204 dp~~~W-lviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~ 1282 (1431)
T KOG1240|consen 1204 DPWCNW-LVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLW 1282 (1431)
T ss_pred cCCceE-EEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEE
Confidence 666664 9999999999999999888877654 4557788887776544 4555544 47889999998763221100
Q ss_pred cc-------cceee--EeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceE-EEEeccCCCeEEEEEccCCCEE
Q 004214 368 MN-------LKAKA--VVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSV-VTFRGHKRGIWSVEFSPVDQVV 437 (768)
Q Consensus 368 ~~-------~~~~~--~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~v~~v~~s~~~~~l 437 (768)
.. ..... ....+.-......+..-+..+.+|+.|..|+.||....+.. ....+..........+. +..+
T Consensus 1283 ~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~-~~~~ 1361 (1431)
T KOG1240|consen 1283 ASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESY-DLST 1361 (1431)
T ss_pred cCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCccccccccchhc-cccc
Confidence 00 00000 00012222333444445678999999999999998765443 22222222222222222 1222
Q ss_pred EEeeCCCcEEE-EeCCC-----CceeEE--------eecCCCcEEEEEEEeCC-CEEEEEeCCCcEEEEE
Q 004214 438 ITASGDKTIKI-WSISD-----GSCLKT--------FEGHTSSVLRASFLTRG-AQIVSCGADGLVKLWT 492 (768)
Q Consensus 438 ~t~~~d~~i~i-wd~~~-----~~~~~~--------~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd 492 (768)
+.++.--...| .-... +..... -..|..+|+++++.... .+|++++.||.|+||.
T Consensus 1362 i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1362 IPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred cCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 22221100000 00000 001111 12588899999987544 5889999999999993
No 204
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.73 E-value=6.5e-16 Score=142.18 Aligned_cols=343 Identities=13% Similarity=0.124 Sum_probs=225.6
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeC
Q 004214 79 SMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGE 158 (768)
Q Consensus 79 ~l~fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (768)
-.+|||+|+|+|+++.- .+.|=|..+.+....+..-..+..+.+..+.
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cldki~yieW~ads------------------------------- 60 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCLDKIVYIEWKADS------------------------------- 60 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHHHHhhheeeeccc-------------------------------
Confidence 35799999999999876 7888888887766555444444444443322
Q ss_pred CcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEE-EecCeEEEEeeccCcccceeeEEEeeecc
Q 004214 159 RGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCV-TADQQLLLYTTVEVPEKKMELILSKRLVG 237 (768)
Q Consensus 159 ~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~~~~~~~~~~~~~~~~~~~~~~~ 237 (768)
..++|+ ..++.+.+|++... .....+..
T Consensus 61 --------------------------------------------~~ilC~~yk~~~vqvwsl~Qp-------ew~ckIde 89 (447)
T KOG4497|consen 61 --------------------------------------------CHILCVAYKDPKVQVWSLVQP-------EWYCKIDE 89 (447)
T ss_pred --------------------------------------------eeeeeeeeccceEEEEEeecc-------eeEEEecc
Confidence 222222 23345555554422 12233344
Q ss_pred cCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCC---eEEEEeC
Q 004214 238 YNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDN---SVRLWDS 314 (768)
Q Consensus 238 ~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg---~i~iwd~ 314 (768)
....+..++|+|++...|.+..-+-.|.+|.+.+......- -....+..++ +.++++. .+..+.-. .+.+..-
T Consensus 90 g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~-~pK~~~kg~~--f~~dg~f-~ai~sRrDCkdyv~i~~c 165 (447)
T KOG4497|consen 90 GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLP-HPKTNVKGYA--FHPDGQF-CAILSRRDCKDYVQISSC 165 (447)
T ss_pred CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEec-ccccCceeEE--ECCCCce-eeeeecccHHHHHHHHhh
Confidence 45677888888877777888888899999999988766432 2233345555 6666665 55554321 1222222
Q ss_pred CCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCE
Q 004214 315 ESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSL 394 (768)
Q Consensus 315 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 394 (768)
..-..+..+...+-..+.+.|+|+|. .+ .+||-.-. ........+-.+..++|+|.+++
T Consensus 166 ~~W~ll~~f~~dT~DltgieWsPdg~-~l---------aVwd~~Le-----------ykv~aYe~~lG~k~v~wsP~~qf 224 (447)
T KOG4497|consen 166 KAWILLKEFKLDTIDLTGIEWSPDGN-WL---------AVWDNVLE-----------YKVYAYERGLGLKFVEWSPCNQF 224 (447)
T ss_pred HHHHHHHhcCCCcccccCceECCCCc-EE---------EEecchhh-----------heeeeeeeccceeEEEeccccce
Confidence 23334555566677788999999976 34 35653210 11111223356889999999999
Q ss_pred EEEEeCCCcEEEEeCCCCceEEEE--------------------------------------------------------
Q 004214 395 VCTGSQDRTACVWRLPDLVSVVTF-------------------------------------------------------- 418 (768)
Q Consensus 395 l~~~~~dg~i~i~d~~~~~~~~~~-------------------------------------------------------- 418 (768)
+++|+.|+.+++.+--+.++...+
T Consensus 225 lavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~ 304 (447)
T KOG4497|consen 225 LAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVK 304 (447)
T ss_pred EEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhccee
Confidence 999999999988653222211110
Q ss_pred ----e------ccCCCeEEEEEccCCCEEEEeeC--CCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCC
Q 004214 419 ----R------GHKRGIWSVEFSPVDQVVITASG--DKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADG 486 (768)
Q Consensus 419 ----~------~~~~~v~~v~~s~~~~~l~t~~~--d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 486 (768)
+ ....++.-++|++|..+++|-.. -+.+-+||++..+....+. ...+|....|.|....|+.+....
T Consensus 305 ~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vctg~s 383 (447)
T KOG4497|consen 305 VHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCTGKS 383 (447)
T ss_pred eecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEEcCCc
Confidence 0 01234667899999999998654 3568999998877666665 667899999999999998888778
Q ss_pred cEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEE
Q 004214 487 LVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVN 531 (768)
Q Consensus 487 ~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~ 531 (768)
.+++|...-..++..-. ..-.|..+.|..+|..++-.+.|....
T Consensus 384 rLY~W~psg~~~V~vP~-~GF~i~~l~W~~~g~~i~l~~kDafc~ 427 (447)
T KOG4497|consen 384 RLYFWAPSGPRVVGVPK-KGFNIQKLQWLQPGEFIVLCGKDAFCV 427 (447)
T ss_pred eEEEEcCCCceEEecCC-CCceeeeEEecCCCcEEEEEcCCceEE
Confidence 89999876655555433 456799999999999999999997543
No 205
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.73 E-value=2.4e-16 Score=154.16 Aligned_cols=209 Identities=14% Similarity=0.196 Sum_probs=162.1
Q ss_pred CCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcE
Q 004214 251 EEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAV 330 (768)
Q Consensus 251 ~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v 330 (768)
....++++++||.+.+.+- .++..+....|.+.+.|-. +.++|.- |++++.||.|++|.- +|....++.....+|
T Consensus 74 ~~d~~~i~s~DGkf~il~k-~~rVE~sv~AH~~A~~~gR--W~~dGtg-Llt~GEDG~iKiWSr-sGMLRStl~Q~~~~v 148 (737)
T KOG1524|consen 74 GSDTLLICSNDGRFVILNK-SARVERSISAHAAAISSGR--WSPDGAG-LLTAGEDGVIKIWSR-SGMLRSTVVQNEESI 148 (737)
T ss_pred CcceEEEEcCCceEEEecc-cchhhhhhhhhhhhhhhcc--cCCCCce-eeeecCCceEEEEec-cchHHHHHhhcCcee
Confidence 3446777888888888773 4556667888999999987 7777777 999999999999974 444444455567899
Q ss_pred EEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 004214 331 GAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLP 410 (768)
Q Consensus 331 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~ 410 (768)
.|++|.|+..+.+++.+. .+.+=.+. .........+|.+-|.++.|+|..+++++|+.|-..++||..
T Consensus 149 ~c~~W~p~S~~vl~c~g~--h~~IKpL~----------~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~ 216 (737)
T KOG1524|consen 149 RCARWAPNSNSIVFCQGG--HISIKPLA----------ANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ 216 (737)
T ss_pred EEEEECCCCCceEEecCC--eEEEeecc----------cccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc
Confidence 999999998887776654 44443333 112344567899999999999999999999999999999964
Q ss_pred CCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEE
Q 004214 411 DLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKL 490 (768)
Q Consensus 411 ~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~i 490 (768)
|..+..-..|..+|++++|.|+ ..++.++. ++.|+= ....+.|..++||+||..+++|+..|.+.+
T Consensus 217 -G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~-nt~R~~-----------~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 217 -GANLFTSAAEEYAITSVAFNPE-KDYLLWSY-NTARFS-----------SPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred -CcccccCChhccceeeeeeccc-cceeeeee-eeeeec-----------CCCccceEEEEEcCCCceeeccccCceEEE
Confidence 5566666779999999999998 77777765 455521 235678999999999999999999997654
No 206
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.71 E-value=2.4e-14 Score=147.17 Aligned_cols=244 Identities=13% Similarity=0.205 Sum_probs=155.3
Q ss_pred eeEEEEecCCCCEEEEE-eCCCcEEEEECCC-cee--eeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCC-
Q 004214 242 ILDLKFLGEEEQYLAVA-TNIEQVQVYDLSS-MSC--SYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES- 316 (768)
Q Consensus 242 i~~~~~~~~~~~~l~~~-~~~~~i~i~d~~~-~~~--~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~- 316 (768)
...+.+++ ++++|+++ ..++.|.+|++.. +.. ..... .......+. +.++++.++++...++.|.+|++.+
T Consensus 37 ~~~l~~sp-d~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~--~~~~g~~l~v~~~~~~~v~v~~~~~~ 112 (330)
T PRK11028 37 VQPMVISP-DKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHIS--TDHQGRFLFSASYNANCVSVSPLDKD 112 (330)
T ss_pred CccEEECC-CCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEE--ECCCCCEEEEEEcCCCeEEEEEECCC
Confidence 44556654 55565554 4578888898863 322 12221 122334454 7778887555555689999999864
Q ss_pred c---eEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCC
Q 004214 317 R---CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDS 393 (768)
Q Consensus 317 ~---~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 393 (768)
+ ..+..+. +.....+++++|+++.++++...++.|.+||+......... ...............++|+|+|+
T Consensus 113 g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~----~~~~~~~~~g~~p~~~~~~pdg~ 187 (330)
T PRK11028 113 GIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQ----EPAEVTTVEGAGPRHMVFHPNQQ 187 (330)
T ss_pred CCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCccccc----CCCceecCCCCCCceEEECCCCC
Confidence 2 2222222 22346778899998866677778899999999752211000 00000011234567899999999
Q ss_pred EEEEEeC-CCcEEEEeCCC--C--ceEEEEecc------CCCeEEEEEccCCCEEEEeeC-CCcEEEEeCCCCceeEEee
Q 004214 394 LVCTGSQ-DRTACVWRLPD--L--VSVVTFRGH------KRGIWSVEFSPVDQVVITASG-DKTIKIWSISDGSCLKTFE 461 (768)
Q Consensus 394 ~l~~~~~-dg~i~i~d~~~--~--~~~~~~~~~------~~~v~~v~~s~~~~~l~t~~~-d~~i~iwd~~~~~~~~~~~ 461 (768)
+++++.. ++.|.+|++.. + +.+..+..+ ......+.++|++++++++.. ++.|.+|++.......++.
T Consensus 188 ~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~ 267 (330)
T PRK11028 188 YAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFE 267 (330)
T ss_pred EEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEe
Confidence 9988876 89999999973 2 233333322 112346889999999998854 7899999986543222222
Q ss_pred cCC---CcEEEEEEEeCCCEEEEEeC-CCcEEEEECC
Q 004214 462 GHT---SSVLRASFLTRGAQIVSCGA-DGLVKLWTVR 494 (768)
Q Consensus 462 ~~~---~~v~~~~~s~~~~~l~s~~~-dg~i~iwd~~ 494 (768)
++. .....+.|+|+|++|+++.. +++|.+|++.
T Consensus 268 ~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 268 GHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred EEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 221 24457899999999998776 8899999874
No 207
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.71 E-value=6.8e-16 Score=151.35 Aligned_cols=175 Identities=15% Similarity=0.209 Sum_probs=140.4
Q ss_pred EEEEeCCCeEEEEeCCCceEEEeee----cccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccc--------
Q 004214 300 IVTGSKDNSVRLWDSESRCCVGVGT----GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQP-------- 367 (768)
Q Consensus 300 l~~~~~dg~i~iwd~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------- 367 (768)
++.|-..|.|.+.|....+....+. -....|+++.|-|.+...++++-.+|.+.+||...........
T Consensus 188 llIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~ 267 (636)
T KOG2394|consen 188 LLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGD 267 (636)
T ss_pred eEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCC
Confidence 7778888999998876532222111 2347899999999989899999999999999864321111100
Q ss_pred ----------cccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEE
Q 004214 368 ----------MNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVV 437 (768)
Q Consensus 368 ----------~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l 437 (768)
....+..........|+.++|+|||++||+.+.||.++|||+.+.+++..++..-+...|++|||||++|
T Consensus 268 ~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyI 347 (636)
T KOG2394|consen 268 QFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYI 347 (636)
T ss_pred eeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEE
Confidence 0011222223344589999999999999999999999999999999888888888899999999999999
Q ss_pred EEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEe
Q 004214 438 ITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLT 474 (768)
Q Consensus 438 ~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~ 474 (768)
++|++|.-|.||.+..++.+..-.+|..+|..++|.|
T Consensus 348 vtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 348 VTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred EecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 9999999999999999999999999999999999987
No 208
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=1.2e-14 Score=128.32 Aligned_cols=284 Identities=16% Similarity=0.168 Sum_probs=188.3
Q ss_pred eeEEEEccCCCceEEEEecCeEEEEeeccCcccce---eeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEEC
Q 004214 193 FTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKM---ELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDL 269 (768)
Q Consensus 193 ~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~ 269 (768)
+...+++|....++++..+|.|.++++........ .........+|+++++.++|. +.+|++++. |.|+-|..
T Consensus 13 vf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~---d~~Lls~gd-G~V~gw~W 88 (325)
T KOG0649|consen 13 VFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH---DDFLLSGGD-GLVYGWEW 88 (325)
T ss_pred HHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee---hhheeeccC-ceEEEeee
Confidence 34456788999999999999999998876543221 122233347899999999997 345666555 99999876
Q ss_pred CCcee----ee----eeeCCc-----cceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEe
Q 004214 270 SSMSC----SY----VLAGHS-----EIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFS 336 (768)
Q Consensus 270 ~~~~~----~~----~~~~~~-----~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~ 336 (768)
..... .. ..+.|. ..|.++. ..|..+. ++.++.|+.++-||+++|+..+.+++|++.|.++.--
T Consensus 89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~--ldP~enS-i~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R 165 (325)
T KOG0649|consen 89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMW--LDPSENS-ILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGR 165 (325)
T ss_pred hhhhhhccchhhhhhcCccccCcccCCccceeE--eccCCCc-EEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeec
Confidence 54322 10 112222 3355553 4455555 5666689999999999999999999999999999884
Q ss_pred cCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEE
Q 004214 337 KKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVV 416 (768)
Q Consensus 337 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~ 416 (768)
.... .+++|+.||++++||.++.......................|-+++.+ ..++++|+ ...+.+|.++..++..
T Consensus 166 ~~~~-qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~--edWlvCGg-Gp~lslwhLrsse~t~ 241 (325)
T KOG0649|consen 166 NANG-QILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVN--EDWLVCGG-GPKLSLWHLRSSESTC 241 (325)
T ss_pred ccCc-ceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEecc--CceEEecC-CCceeEEeccCCCceE
Confidence 3323 499999999999999987654332211111111111223445666554 55777765 4679999999998888
Q ss_pred EEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCC-CEEEEEeCCCcEEEE
Q 004214 417 TFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRG-AQIVSCGADGLVKLW 491 (768)
Q Consensus 417 ~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~iw 491 (768)
.+. -..++..+.|- ...+++++..+.|.-|.+ +|.............++..|+... ++|-.++....+.|+
T Consensus 242 vfp-ipa~v~~v~F~--~d~vl~~G~g~~v~~~~l-~Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 242 VFP-IPARVHLVDFV--DDCVLIGGEGNHVQSYTL-NGVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred EEe-cccceeEeeee--cceEEEeccccceeeeee-ccEEEEeccCCccceeeecccCCceEEEEecccceeeeee
Confidence 776 45678888887 456777887788999987 455555555444445555554332 344444555555554
No 209
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.70 E-value=3.8e-15 Score=159.88 Aligned_cols=365 Identities=17% Similarity=0.181 Sum_probs=213.6
Q ss_pred EECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCC-------eeEEEecCccceeEEEEEcCCCC
Q 004214 15 WDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK-------KCVATLDKHFSRVTSMAITSDGS 87 (768)
Q Consensus 15 wd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~-------~~~~~l~~h~~~V~~l~fs~d~~ 87 (768)
|++ .|..+..+..|...|..++.++.. ..+++|||.||+|++||...- +...++....+.+.++.+.+.++
T Consensus 1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~-~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~ 1111 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEH-TSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD 1111 (1431)
T ss_pred CCc-cceEeehhhhccccccceeecCCC-CceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC
Confidence 444 467799999999999999998764 134999999999999998531 22334444567899999999999
Q ss_pred EEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEc
Q 004214 88 TLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNA 167 (768)
Q Consensus 88 ~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~ 167 (768)
.+|.++.||.|++.++.-....+..... ...++.........- . ..........++.+...+.+..||+
T Consensus 1112 ~~Av~t~DG~v~~~~id~~~~~~~~~~~------~ri~n~~~~g~vv~m----~-a~~~~~~S~~lvy~T~~~~iv~~D~ 1180 (1431)
T KOG1240|consen 1112 QFAVSTKDGSVRVLRIDHYNVSKRVATQ------VRIPNLKKDGVVVSM----H-AFTAIVQSHVLVYATDLSRIVSWDT 1180 (1431)
T ss_pred eEEEEcCCCeEEEEEccccccccceeee------eecccccCCCceEEe----e-cccccccceeEEEEEeccceEEecc
Confidence 9999999999999998763211111100 000000000000000 0 0000011136777888899999998
Q ss_pred CCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEE
Q 004214 168 DSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKF 247 (768)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 247 (768)
....... ........+.++..+..|.++.++.|+..|.+.+|++.-. .+...-..++..++..+..
T Consensus 1181 r~~~~~w--------~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~------~~i~sw~~P~~~~i~~v~~ 1246 (1431)
T KOG1240|consen 1181 RMRHDAW--------RLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFR------VPILSWEHPARAPIRHVWL 1246 (1431)
T ss_pred hhhhhHH--------hhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecC------ceeecccCcccCCcceEEe
Confidence 8772221 1222333477889999999999999999999999998743 2233333344566666655
Q ss_pred ecCCC--CEEEEEe--CCCcEEEEECCCceeeeeeeCC-c---------------cceEEEeeeeecCCCEEEEEEeCCC
Q 004214 248 LGEEE--QYLAVAT--NIEQVQVYDLSSMSCSYVLAGH-S---------------EIVLCLDTCALSSGKILIVTGSKDN 307 (768)
Q Consensus 248 ~~~~~--~~l~~~~--~~~~i~i~d~~~~~~~~~~~~~-~---------------~~v~~l~~~~~~~~~~~l~~~~~dg 307 (768)
.+..+ ...++++ ..+.|.+|++.++.+...+... . ..-.+...|....++.++.+|+.|.
T Consensus 1247 ~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~ 1326 (1431)
T KOG1240|consen 1247 CPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDM 1326 (1431)
T ss_pred eccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCcc
Confidence 44322 4444443 5789999999999777665332 0 1111122233444555699999999
Q ss_pred eEEEEeCCCceEEE-eeecccCcEEEEEEecCCCcEEEEEeCCCeEEE-EeCCCCCC--C-CccccccceeeEeeccCCC
Q 004214 308 SVRLWDSESRCCVG-VGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKV-WSFDGLSD--D-AEQPMNLKAKAVVAAHGKD 382 (768)
Q Consensus 308 ~i~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~i-wd~~~~~~--~-~~~~~~~~~~~~~~~~~~~ 382 (768)
.|+.||........ ...+..........+.+- -++.++.--...+ .....+.. . ...............|...
T Consensus 1327 kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~~--~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~ 1404 (1431)
T KOG1240|consen 1327 KIRKWDPTRPEISSYAVPGPSTSYSTNSESYDL--STIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDP 1404 (1431)
T ss_pred ceeeccCCCcccccccccCccccccccchhccc--cccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccch
Confidence 99999987654431 111221122222222110 1222221100000 00000000 0 0000111122223458889
Q ss_pred eEEEEEccC-CCEEEEEeCCCcEEEEe
Q 004214 383 INSLAVAPN-DSLVCTGSQDRTACVWR 408 (768)
Q Consensus 383 i~~~~~s~~-~~~l~~~~~dg~i~i~d 408 (768)
|+++++... ..++++++.||.|++|.
T Consensus 1405 Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1405 ITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred hhhhhhhccCccEEEEecCCCeeeecC
Confidence 999988764 46899999999999993
No 210
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.70 E-value=1.1e-14 Score=136.73 Aligned_cols=227 Identities=11% Similarity=0.216 Sum_probs=165.3
Q ss_pred cCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCC--CeEEEEeCCCCCCCCccccccc
Q 004214 294 SSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSD--HTIKVWSFDGLSDDAEQPMNLK 371 (768)
Q Consensus 294 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~ 371 (768)
..+..+|..|+.|| .++|+................|--+-|+.. +++..+.+ +.++++++...
T Consensus 14 Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSSS---LvaiV~~~qpr~Lkv~~~Kk~----------- 78 (391)
T KOG2110|consen 14 NQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSSS---LVAIVSIKQPRKLKVVHFKKK----------- 78 (391)
T ss_pred ccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecccc---eeEEEecCCCceEEEEEcccC-----------
Confidence 34445577788877 466766543332222222233445555543 55555544 34778877632
Q ss_pred eeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEec---cCCCeEEEEEccCCCEEEEee--CCCcE
Q 004214 372 AKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG---HKRGIWSVEFSPVDQVVITAS--GDKTI 446 (768)
Q Consensus 372 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~v~~v~~s~~~~~l~t~~--~d~~i 446 (768)
...........|.++.++.+ .|++.-.+ .|+|||+++.+.+.++.. +..++.++.+++.+.++|--+ ..|.|
T Consensus 79 ~~ICe~~fpt~IL~VrmNr~--RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV 155 (391)
T KOG2110|consen 79 TTICEIFFPTSILAVRMNRK--RLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDV 155 (391)
T ss_pred ceEEEEecCCceEEEEEccc--eEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceE
Confidence 11112234567888888654 56665554 499999999999988764 344566666666667887533 46899
Q ss_pred EEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCc-EEEEECCCCeEEEEeccC--CCcEEEEEEcCCCCEEEE
Q 004214 447 KIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGL-VKLWTVRTGECIATYDKH--EDKIWALAVGKKTEMFAT 523 (768)
Q Consensus 447 ~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~--~~~v~~l~~s~~~~~l~s 523 (768)
.+||+.+-+++..+..|.+++-+++|+++|.+||+++..|+ ||||.+.+|+.+..|+.- ...|.+++|+|++++|++
T Consensus 156 ~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~ 235 (391)
T KOG2110|consen 156 VLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAA 235 (391)
T ss_pred EEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEE
Confidence 99999999999999999999999999999999999999995 799999999999998743 345889999999999999
Q ss_pred EeCCCcEEEEEcCCH
Q 004214 524 GGSDALVNLWHDSTA 538 (768)
Q Consensus 524 ~~~dg~v~vw~~~~~ 538 (768)
.|+.++|++|++...
T Consensus 236 sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 236 SSNTETVHIFKLEKV 250 (391)
T ss_pred ecCCCeEEEEEeccc
Confidence 999999999998764
No 211
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=1.4e-14 Score=148.15 Aligned_cols=433 Identities=14% Similarity=0.122 Sum_probs=272.4
Q ss_pred CCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCC------------CEEEEEeCCC
Q 004214 29 HKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDG------------STLISAGRDK 96 (768)
Q Consensus 29 h~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~------------~~L~s~~~dg 96 (768)
|...-.++.|+|.|- +|-|+ ...|.|-|..+-+.++.+..|...|+.+.|.|-. -.|+++...|
T Consensus 14 ~~sN~~A~Dw~~~GL---iAygs-hslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~G 89 (1062)
T KOG1912|consen 14 SRSNRNAADWSPSGL---IAYGS-HSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISG 89 (1062)
T ss_pred CcccccccccCccce---EEEec-CceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccC
Confidence 444567888999752 45444 5669999999999999999999999999998731 2467777889
Q ss_pred eEEEEECCCCeeeeeeecc-eeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeee
Q 004214 97 VVNLWDLRDYSCKLTVPTY-EMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQ 175 (768)
Q Consensus 97 ~i~vWd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~ 175 (768)
.|.+||...+..+..+..+ .++..++|.+.... ....+++......+.+|+..+|..+..
T Consensus 90 rIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~-------------------Srd~LlaIh~ss~lvLwntdtG~k~Wk 150 (1062)
T KOG1912|consen 90 RIILVDFVLASVINWLSHSNDSVQDLCWVPARDD-------------------SRDVLLAIHGSSTLVLWNTDTGEKFWK 150 (1062)
T ss_pred cEEEEEehhhhhhhhhcCCCcchhheeeeeccCc-------------------chheeEEecCCcEEEEEEccCCceeec
Confidence 9999999998877777654 35777887765431 123677777888999999999966654
Q ss_pred cCCceeecccccCcccceeEEEEccCCCce-EEEEecCeEEEEeeccCcccce---eeEEEee--e-----------ccc
Q 004214 176 KSSDVTISFEMDDSKRGFTAATVLPSNQGL-LCVTADQQLLLYTTVEVPEKKM---ELILSKR--L-----------VGY 238 (768)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~dg~i~~~~~~~~~~~~~---~~~~~~~--~-----------~~~ 238 (768)
+.... ....+..+.|...+- ...+..|.+.+-+.....++.. .+.+... - ..+
T Consensus 151 ~~ys~----------~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ 220 (1062)
T KOG1912|consen 151 YDYSH----------EILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNST 220 (1062)
T ss_pred cccCC----------cceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccc
Confidence 43321 223345555655443 4444556655554433322211 1111111 0 001
Q ss_pred CCce---------eEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeE
Q 004214 239 NEEI---------LDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSV 309 (768)
Q Consensus 239 ~~~i---------~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i 309 (768)
...- ..++|+|.-.+.+..... ..+.++|++-..++....-..+.+.-+++...+... .|+++..||.+
T Consensus 221 ts~~~sa~fity~a~faf~p~~rn~lfi~~p-rellv~dle~~~~l~vvpier~~akfv~vlP~~~rd-~LfclH~nG~l 298 (1062)
T KOG1912|consen 221 TSTPASAYFITYCAQFAFSPHWRNILFITFP-RELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRD-ALFCLHSNGRL 298 (1062)
T ss_pred cCCCcchhHHHHHHhhhcChhhhceEEEEec-cceEEEcchhhceeEEEEeccCCcceeEeccCCCcc-eEEEEecCCeE
Confidence 1111 123455555555555444 889999999888888877777766666633444444 48899999999
Q ss_pred EEEeCCC----------------ceEEEeeec-ccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCc-------
Q 004214 310 RLWDSES----------------RCCVGVGTG-HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAE------- 365 (768)
Q Consensus 310 ~iwd~~~----------------~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~------- 365 (768)
.+|--+. +.....+.. ..-........|..++.++.--.+|.+.+|.+.++.....
T Consensus 299 tirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~ie 378 (1062)
T KOG1912|consen 299 TIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIE 378 (1062)
T ss_pred EEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCccccccccc
Confidence 9996433 111111110 0111122223343333444445677788888874421110
Q ss_pred --cccc------------cceeeEeeccCCCeEEEEEcc-----------CC-------CEEEEEeCCCcEEEEeCCCCc
Q 004214 366 --QPMN------------LKAKAVVAAHGKDINSLAVAP-----------ND-------SLVCTGSQDRTACVWRLPDLV 413 (768)
Q Consensus 366 --~~~~------------~~~~~~~~~~~~~i~~~~~s~-----------~~-------~~l~~~~~dg~i~i~d~~~~~ 413 (768)
.++. .........|....++....| .+ .++|.|+..|+|.++|+.++.
T Consensus 379 l~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~ 458 (1062)
T KOG1912|consen 379 LVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNA 458 (1062)
T ss_pred ccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchh
Confidence 0000 001111123455555544433 12 368999999999999999999
Q ss_pred eEEEEeccCCCeEEEEEccCCCEEEEe---------eCCCcEEEEeCCCCcee--EEee-cCCCcEEEEEEEeCCCEEEE
Q 004214 414 SVVTFRGHKRGIWSVEFSPVDQVVITA---------SGDKTIKIWSISDGSCL--KTFE-GHTSSVLRASFLTRGAQIVS 481 (768)
Q Consensus 414 ~~~~~~~~~~~v~~v~~s~~~~~l~t~---------~~d~~i~iwd~~~~~~~--~~~~-~~~~~v~~~~~s~~~~~l~s 481 (768)
....+..|...|.++.|-....++-.+ +.-+.+.+-|+++|... +-+. ....+|..+..|..|+||+.
T Consensus 459 v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~~irvS~~~~yLai 538 (1062)
T KOG1912|consen 459 VAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRAIRVSSSGRYLAI 538 (1062)
T ss_pred hhhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccCCCCCcCcceeeeecccCceEEE
Confidence 999999999999999998765544322 22345778899988543 2223 34578999999999999999
Q ss_pred EeCCCcEEEEECCCC
Q 004214 482 CGADGLVKLWTVRTG 496 (768)
Q Consensus 482 ~~~dg~i~iwd~~~~ 496 (768)
.-.|.-+-+||+++.
T Consensus 539 ~Fr~~plEiwd~kt~ 553 (1062)
T KOG1912|consen 539 LFRREPLEIWDLKTL 553 (1062)
T ss_pred EecccchHHHhhccc
Confidence 999999999998653
No 212
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.70 E-value=6.9e-14 Score=128.88 Aligned_cols=278 Identities=19% Similarity=0.255 Sum_probs=183.9
Q ss_pred eeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCC------CeEEEEeCC
Q 004214 242 ILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKD------NSVRLWDSE 315 (768)
Q Consensus 242 i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~d------g~i~iwd~~ 315 (768)
..+++|. .+...+++|+. .-.++|+.+..+.......+...+.-+. ..-..+.+.+.|+.+ +.|.|||-.
T Consensus 8 ~lsvs~N-QD~ScFava~~-~Gfriyn~~P~ke~~~r~~~~~G~~~ve--MLfR~N~laLVGGg~~pky~pNkviIWDD~ 83 (346)
T KOG2111|consen 8 TLSVSFN-QDHSCFAVATD-TGFRIYNCDPFKESASRQFIDGGFKIVE--MLFRSNYLALVGGGSRPKYPPNKVIIWDDL 83 (346)
T ss_pred eeEEEEc-cCCceEEEEec-CceEEEecCchhhhhhhccccCchhhhh--HhhhhceEEEecCCCCCCCCCceEEEEecc
Confidence 3446665 46677888877 5578999877544333332222221111 111223334455443 579999977
Q ss_pred CceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEE
Q 004214 316 SRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLV 395 (768)
Q Consensus 316 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 395 (768)
...++..+. ...+|.++.+.++ .+++. ..+.|.+|.+..... .. ........+....+++-..+..+|
T Consensus 84 k~~~i~el~-f~~~I~~V~l~r~---riVvv-l~~~I~VytF~~n~k------~l-~~~et~~NPkGlC~~~~~~~k~~L 151 (346)
T KOG2111|consen 84 KERCIIELS-FNSEIKAVKLRRD---RIVVV-LENKIYVYTFPDNPK------LL-HVIETRSNPKGLCSLCPTSNKSLL 151 (346)
T ss_pred cCcEEEEEE-eccceeeEEEcCC---eEEEE-ecCeEEEEEcCCChh------he-eeeecccCCCceEeecCCCCceEE
Confidence 777776665 5688999999987 34444 457899999874211 11 111111222333333333344455
Q ss_pred EE-EeCCCcEEEEeCCCCce--EEEEeccCCCeEEEEEccCCCEEEEeeCCCc-EEEEeCCCCceeEEeec--CCCcEEE
Q 004214 396 CT-GSQDRTACVWRLPDLVS--VVTFRGHKRGIWSVEFSPVDQVVITASGDKT-IKIWSISDGSCLKTFEG--HTSSVLR 469 (768)
Q Consensus 396 ~~-~~~dg~i~i~d~~~~~~--~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~-i~iwd~~~~~~~~~~~~--~~~~v~~ 469 (768)
|. |-.-|.|.|-|+...+. ...+..|...|.|++.+-+|.++||+|..|+ |||||..+|+.+..++. ....|.+
T Consensus 152 afPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~ 231 (346)
T KOG2111|consen 152 AFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYC 231 (346)
T ss_pred EcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEE
Confidence 54 34568999999976655 5778899999999999999999999999997 79999999999999873 3457999
Q ss_pred EEEEeCCCEEEEEeCCCcEEEEECCCCe---E---------------------EEEeccCCCcEEEEEEcCCCCEEEEEe
Q 004214 470 ASFLTRGAQIVSCGADGLVKLWTVRTGE---C---------------------IATYDKHEDKIWALAVGKKTEMFATGG 525 (768)
Q Consensus 470 ~~~s~~~~~l~s~~~dg~i~iwd~~~~~---~---------------------~~~~~~~~~~v~~l~~s~~~~~l~s~~ 525 (768)
++|||++.+|++++.-|+|+||.++... . +..+.-..++..-++|-.+.+.++..+
T Consensus 232 iaFSp~~s~LavsSdKgTlHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~ 311 (346)
T KOG2111|consen 232 IAFSPNSSWLAVSSDKGTLHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAIC 311 (346)
T ss_pred EEeCCCccEEEEEcCCCeEEEEEeecCCCCccccccccccccccchhcccceeEEEEEccCCCcEEEEecCCCCeEEEEE
Confidence 9999999999999999999999886422 1 111122334455567776666777777
Q ss_pred CCCcEEEEEc
Q 004214 526 SDALVNLWHD 535 (768)
Q Consensus 526 ~dg~v~vw~~ 535 (768)
.||.-+-+.+
T Consensus 312 ~Dgsy~k~~f 321 (346)
T KOG2111|consen 312 ADGSYYKFKF 321 (346)
T ss_pred eCCcEEEEEe
Confidence 7887544443
No 213
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.69 E-value=2.7e-15 Score=158.83 Aligned_cols=235 Identities=16% Similarity=0.188 Sum_probs=164.7
Q ss_pred CCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCC---CeEEEEeCCCceE--EEeeecccCcEEEEEE
Q 004214 261 IEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKD---NSVRLWDSESRCC--VGVGTGHMGAVGAVAF 335 (768)
Q Consensus 261 ~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~--~~~~~~~~~~v~~~~~ 335 (768)
+..|.+||..... ...+..|...+.... ++|++.. ++.++.+ ..|++||+.+++. +..+.+| ...++|
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~--wSPDG~~-la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~w 255 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPA--WSPDGSK-LAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAF 255 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccce--EcCCCCE-EEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeE
Confidence 3689999987655 446677777888887 8888887 5554432 4799999988754 3333333 446899
Q ss_pred ecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEe-CCCcEEEEeCCCC-c
Q 004214 336 SKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGS-QDRTACVWRLPDL-V 413 (768)
Q Consensus 336 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~-~ 413 (768)
+|+|+.++++.+.+|.+.+|.++... . ....+..+...+.+..|+|||+.|+.++ .+|...+|+++.. .
T Consensus 256 SPDG~~La~~~~~~g~~~Iy~~d~~~--------~-~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~ 326 (429)
T PRK01742 256 SPDGSRLAFASSKDGVLNIYVMGANG--------G-TPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGG 326 (429)
T ss_pred CCCCCEEEEEEecCCcEEEEEEECCC--------C-CeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 99988655555678877766443211 0 1122334556678899999999777655 5788888876432 2
Q ss_pred eEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEEC
Q 004214 414 SVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTV 493 (768)
Q Consensus 414 ~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 493 (768)
....+ .+.. .+..|+|+|+.|+.++.++ +.+||+.++........+ ....+.|+|+|++|+.++.+|.+.+|.+
T Consensus 327 ~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~ 400 (429)
T PRK01742 327 GASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQL 400 (429)
T ss_pred CeEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEE
Confidence 22222 3433 4678999999998887755 666999888765333322 2356789999999999999998888876
Q ss_pred --CCCeEEEEeccCCCcEEEEEEcCC
Q 004214 494 --RTGECIATYDKHEDKIWALAVGKK 517 (768)
Q Consensus 494 --~~~~~~~~~~~~~~~v~~l~~s~~ 517 (768)
.+|..+..+..|.+.+...+|+|-
T Consensus 401 ~~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 401 VSADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred EECCCCceEEccCCCCCCCCcccCCC
Confidence 368888899888888999999984
No 214
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.69 E-value=4.2e-14 Score=150.20 Aligned_cols=398 Identities=13% Similarity=0.168 Sum_probs=218.8
Q ss_pred CEEEeecCCCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEE-EecCccceeEE
Q 004214 1 MFALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVA-TLDKHFSRVTS 79 (768)
Q Consensus 1 ~~latg~~dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~-~l~~h~~~V~~ 79 (768)
.++++|+.-+.|++|++..-..-..+.||.+.|.++.|+-||.+ +++.|+|.++++|++.+++... +.-+|+..|+.
T Consensus 146 ~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~--i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~ 223 (967)
T KOG0974|consen 146 LYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRY--IASVSDDRSIRLWPIDSREVLGCTGFGHSARVWA 223 (967)
T ss_pred EEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcE--EEEEecCcceeeeecccccccCcccccccceeEE
Confidence 37899999999999999744434469999999999999999998 9999999999999999998876 67789999999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCeeeeeeecc--eeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEee
Q 004214 80 MAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTY--EMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVG 157 (768)
Q Consensus 80 l~fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (768)
++|.|+ +++|++.|.+.++|+....+.. .+..+ ..+..+...+.. ...++++
T Consensus 224 ~~~~~n--~i~t~gedctcrvW~~~~~~l~-~y~~h~g~~iw~~~~~~~~-----------------------~~~vT~g 277 (967)
T KOG0974|consen 224 CCFLPN--RIITVGEDCTCRVWGVNGTQLE-VYDEHSGKGIWKIAVPIGV-----------------------IIKVTGG 277 (967)
T ss_pred EEeccc--eeEEeccceEEEEEecccceeh-hhhhhhhcceeEEEEcCCc-----------------------eEEEeec
Confidence 999998 9999999999999976543332 33322 224555554443 3789999
Q ss_pred CCcEEEEEEcCCceeeeecCCceeecccccCccccee----EEEEccCCCceEEEEe--cCeEEEEeeccCcccceeeEE
Q 004214 158 ERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFT----AATVLPSNQGLLCVTA--DQQLLLYTTVEVPEKKMELIL 231 (768)
Q Consensus 158 ~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~--dg~i~~~~~~~~~~~~~~~~~ 231 (768)
.||.+++|++.+.......................+. ...+...+..+...+. ++.+......
T Consensus 278 ~Ds~lk~~~l~~r~~e~~~~~~~~~~s~~kl~~~~f~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------- 346 (967)
T KOG0974|consen 278 NDSTLKLWDLNGRGLEGHVEQSSLLSSIVKLKDDQFVKCDTLLNFANHGGKLSILGNKGEKELITFESD----------- 346 (967)
T ss_pred cCcchhhhhhhccccccceeeeeeecchhhhcceeeeehHHHHHHHhcCCeEeecccccccceeeeeec-----------
Confidence 9999999998766221110000000000000000000 0000011111111111 1111111111
Q ss_pred EeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCE----EEEEEeCCC
Q 004214 232 SKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKI----LIVTGSKDN 307 (768)
Q Consensus 232 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~----~l~~~~~dg 307 (768)
.-..+.+.-.+..+++.+++.+.+.+.-...........-|. .+. ..+.... ....-.-+|
T Consensus 347 ---------s~~~i~~~~~~~~~v~~~~~k~~~~v~~~~~~~~~~~~~~h~-~~s-----~~~~~~~~~~~~~~~~~~~g 411 (967)
T KOG0974|consen 347 ---------SMLRIIFSCTNDDWVAHMSNKGDIYVAWHQNTIVITTSSLHR-KLS-----ANPISQVCEASYVASKLIDG 411 (967)
T ss_pred ---------cCccceehccccceeeeccCCCcEEEEEeecccCccchhHHH-HHh-----hCcccceeeeeeehhhccCC
Confidence 001122222355677778887877775544332111111111 000 1111110 112222345
Q ss_pred eEEEEeCCC-------ceE---EEee-ecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEe
Q 004214 308 SVRLWDSES-------RCC---VGVG-TGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVV 376 (768)
Q Consensus 308 ~i~iwd~~~-------~~~---~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 376 (768)
..+.|.... .-. ...+ ......+.++.-.+.+. .++.|+.-|.+.++++..+......... +....
T Consensus 412 ~~~~r~~~~~~~~~ad~~~i~~~~~f~~~~~~~~~~l~~~~~~~-~~l~Gs~~g~lv~~~l~~~~~~~~~~~~--~~~~~ 488 (967)
T KOG0974|consen 412 SIQVRNLSGSLESFADVLNIRSLKEFRLPFAFRIPCLTSVVEDN-LILIGSRHGELVLYNLDEPNDDIVLSLS--RSHEL 488 (967)
T ss_pred cchhhhhhcccccccceeEEeeeeeeccccCCCCcceecccCcc-eEEEccCcCcEEEecCCCCCccceeecc--Ccccc
Confidence 556664211 001 1111 12334556666666544 6889999999999999866433221111 11111
Q ss_pred eccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCce------EEEEeccCCC-----eEEEEEccCCCEEEEeeCCCc
Q 004214 377 AAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVS------VVTFRGHKRG-----IWSVEFSPVDQVVITASGDKT 445 (768)
Q Consensus 377 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~------~~~~~~~~~~-----v~~v~~s~~~~~l~t~~~d~~ 445 (768)
..| +.+....--++.-++.+.+.||...++.+..... +..++.+..- ...+.++| +++++.|-....
T Consensus 489 ~~~-~si~~~~~kdn~~~~~~~g~dg~~~~~~~~r~~~~n~~~~L~~~~~~s~v~~g~~~~~~~~~k-~n~~~~gf~st~ 566 (967)
T KOG0974|consen 489 DTG-SSITCIRSKDNSAIFMTTGRDGYWSTIELIRGGTTNYPMELMNKKSFSTVSSGALPSKFINWK-GNLLIVGFYSTS 566 (967)
T ss_pred ccc-ccEEEEecCCCcEEEEEecCCcEEEEEEEecCccccccceeeeeccCCeeeecchhhhhccCC-CceEEEEEEecc
Confidence 111 2344444444556677788889888887754432 2222222211 11223333 566666666666
Q ss_pred EEEEeCCCCcee
Q 004214 446 IKIWSISDGSCL 457 (768)
Q Consensus 446 i~iwd~~~~~~~ 457 (768)
..+||..+...+
T Consensus 567 f~l~n~T~~~~i 578 (967)
T KOG0974|consen 567 FILWNETNETPI 578 (967)
T ss_pred ceEeccccCcee
Confidence 777776554443
No 215
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=6.5e-16 Score=147.79 Aligned_cols=195 Identities=17% Similarity=0.224 Sum_probs=155.7
Q ss_pred EEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 004214 331 GAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLP 410 (768)
Q Consensus 331 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~ 410 (768)
.+++|+.+|. .+++|+.||++|+|+++.. ........|...|.++.|+|||++|++-+.| ..+||+..
T Consensus 148 k~vaf~~~gs-~latgg~dg~lRv~~~Ps~----------~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~ 215 (398)
T KOG0771|consen 148 KVVAFNGDGS-KLATGGTDGTLRVWEWPSM----------LTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVN 215 (398)
T ss_pred eEEEEcCCCC-EeeeccccceEEEEecCcc----------hhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEec
Confidence 7889999976 7999999999999998743 3444556788999999999999999999999 89999999
Q ss_pred CCceEEEEecc--CCCeEEEEEccCC-----CEEEEeeCCCcEEEEeCCCCc-----eeEEeecCCCcEEEEEEEeCCCE
Q 004214 411 DLVSVVTFRGH--KRGIWSVEFSPVD-----QVVITASGDKTIKIWSISDGS-----CLKTFEGHTSSVLRASFLTRGAQ 478 (768)
Q Consensus 411 ~~~~~~~~~~~--~~~v~~v~~s~~~-----~~l~t~~~d~~i~iwd~~~~~-----~~~~~~~~~~~v~~~~~s~~~~~ 478 (768)
++..+...... ......+.|+.++ .+++....-+.|+.|++.... ..++...-...|++++.+++|++
T Consensus 216 ~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf 295 (398)
T KOG0771|consen 216 TGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKF 295 (398)
T ss_pred cCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcE
Confidence 99766655532 2346678888877 333444445667777764332 12222234468999999999999
Q ss_pred EEEEeCCCcEEEEECCCCeEEEEe-ccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 004214 479 IVSCGADGLVKLWTVRTGECIATY-DKHEDKIWALAVGKKTEMFATGGSDALVNLWHDST 537 (768)
Q Consensus 479 l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~ 537 (768)
++.|+.||.|-|++..+-++++-. +.|...|+.+.|+|+.+++++.+.|....|..+.-
T Consensus 296 ~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 296 LALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 999999999999999998887766 47999999999999999999999999988887653
No 216
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.68 E-value=6.6e-15 Score=135.47 Aligned_cols=236 Identities=15% Similarity=0.160 Sum_probs=185.4
Q ss_pred CCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCce---EEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEe
Q 004214 280 GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC---CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS 356 (768)
Q Consensus 280 ~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd 356 (768)
....+|+|.+ +.++... ++.+.....|.||...... ...+++.|...|+.++|+|..+ .|++++.|..-++|.
T Consensus 8 ~~~~pitchA--wn~drt~-iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~sn-rIvtcs~drnayVw~ 83 (361)
T KOG1523|consen 8 RLLEPITCHA--WNSDRTQ-IAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSN-RIVTCSHDRNAYVWT 83 (361)
T ss_pred eccCceeeee--ecCCCce-EEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCC-ceeEccCCCCccccc
Confidence 3457888886 5555554 9999999999999887654 6778889999999999999965 699999999999998
Q ss_pred CCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceE----EEEeccCCCeEEEEEcc
Q 004214 357 FDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSV----VTFRGHKRGIWSVEFSP 432 (768)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~----~~~~~~~~~v~~v~~s~ 432 (768)
...+. ..++...+..++...+++.|+|.++.||+|+....|.||-++....- ..-+.+...|++++|+|
T Consensus 84 ~~~~~-------~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhp 156 (361)
T KOG1523|consen 84 QPSGG-------TWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHP 156 (361)
T ss_pred cCCCC-------eeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccC
Confidence 84332 66677788889999999999999999999999999999988654322 12234667899999999
Q ss_pred CCCEEEEeeCCCcEEEEeCC------------------CCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECC
Q 004214 433 VDQVVITASGDKTIKIWSIS------------------DGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVR 494 (768)
Q Consensus 433 ~~~~l~t~~~d~~i~iwd~~------------------~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 494 (768)
++-+|++|+.|+..|||..- .|.++..+....+.+..+.|+|+|+.|+-.+.|+.+.+-|..
T Consensus 157 nnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~ 236 (361)
T KOG1523|consen 157 NNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAA 236 (361)
T ss_pred CcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecC
Confidence 99999999999999999741 133445555567899999999999999999999999999876
Q ss_pred CCe-EEEEeccCCCcEEEEEEcCCCCEEEEEeCC
Q 004214 495 TGE-CIATYDKHEDKIWALAVGKKTEMFATGGSD 527 (768)
Q Consensus 495 ~~~-~~~~~~~~~~~v~~l~~s~~~~~l~s~~~d 527 (768)
... .+.+.....-+..++.|-.+.. +++++.|
T Consensus 237 ~p~~~v~~~~~~~lP~ls~~~ise~~-vv~ag~~ 269 (361)
T KOG1523|consen 237 GPSERVQSVATAQLPLLSVSWISENS-VVAAGYD 269 (361)
T ss_pred CCchhccchhhccCCceeeEeecCCc-eeecCCC
Confidence 654 4444444446777777765443 4444444
No 217
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.68 E-value=1.8e-16 Score=152.55 Aligned_cols=263 Identities=20% Similarity=0.241 Sum_probs=190.6
Q ss_pred cceeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEE
Q 004214 74 FSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHF 153 (768)
Q Consensus 74 ~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (768)
.-+...+.++.+|++|+.+|.-|.|..+|+.++++...+...+.+..+.|.....
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq------------------------- 183 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQ------------------------- 183 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchH-------------------------
Confidence 4456788999999999999999999999999999888887766666665555442
Q ss_pred EEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEe
Q 004214 154 ITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSK 233 (768)
Q Consensus 154 ~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~ 233 (768)
T Consensus 184 -------------------------------------------------------------------------------- 183 (545)
T KOG1272|consen 184 -------------------------------------------------------------------------------- 183 (545)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEe
Q 004214 234 RLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWD 313 (768)
Q Consensus 234 ~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd 313 (768)
++|++-. ..++|||-. |..+..+..| ..|..+. |.|. ..+|++++..|.++.-|
T Consensus 184 --------------------~~AVAQK-~y~yvYD~~-GtElHClk~~-~~v~rLe--FLPy-HfLL~~~~~~G~L~Y~D 237 (545)
T KOG1272|consen 184 --------------------FFAVAQK-KYVYVYDNN-GTELHCLKRH-IRVARLE--FLPY-HFLLVAASEAGFLKYQD 237 (545)
T ss_pred --------------------HHHhhhh-ceEEEecCC-CcEEeehhhc-Cchhhhc--ccch-hheeeecccCCceEEEe
Confidence 2333222 344444432 2222233222 2344444 4443 45699999999999999
Q ss_pred CCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCC
Q 004214 314 SESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDS 393 (768)
Q Consensus 314 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 393 (768)
+.+|+.+..+..-.+.+..++-+|-+. ++-+|..+|+|.+|.... ..+......|.++|.++++.++|+
T Consensus 238 VS~GklVa~~~t~~G~~~vm~qNP~Na-Vih~GhsnGtVSlWSP~s----------kePLvKiLcH~g~V~siAv~~~G~ 306 (545)
T KOG1272|consen 238 VSTGKLVASIRTGAGRTDVMKQNPYNA-VIHLGHSNGTVSLWSPNS----------KEPLVKILCHRGPVSSIAVDRGGR 306 (545)
T ss_pred echhhhhHHHHccCCccchhhcCCccc-eEEEcCCCceEEecCCCC----------cchHHHHHhcCCCcceEEECCCCc
Confidence 999999999998899999999999855 889999999999998763 335555678999999999999999
Q ss_pred EEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEe-CCCCc--eeEEeecC--CCcEE
Q 004214 394 LVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWS-ISDGS--CLKTFEGH--TSSVL 468 (768)
Q Consensus 394 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd-~~~~~--~~~~~~~~--~~~v~ 468 (768)
++++++.|..++|||++....+.++.. ..+...++||..|. || .+....|.||. .-.+. +-..+-.| .++|.
T Consensus 307 YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkgl-LA-~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~ 383 (545)
T KOG1272|consen 307 YMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKGL-LA-LSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVE 383 (545)
T ss_pred EEeecccccceeEeeeccccccceeec-CCCccccccccccc-ee-eecCCeeeeehhhhcCCCCCCcchhhhccCcccc
Confidence 999999999999999999887777765 56778889986553 33 34446799995 22211 11111122 34788
Q ss_pred EEEEEeCCCEEEE
Q 004214 469 RASFLTRGAQIVS 481 (768)
Q Consensus 469 ~~~~s~~~~~l~s 481 (768)
.+.|.|-...|-.
T Consensus 384 ~l~FcP~EDvLGI 396 (545)
T KOG1272|consen 384 DLRFCPYEDVLGI 396 (545)
T ss_pred cceeccHHHeeec
Confidence 8888887665544
No 218
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.68 E-value=5.7e-15 Score=139.64 Aligned_cols=273 Identities=12% Similarity=0.135 Sum_probs=199.2
Q ss_pred ccCCceeEEEEecCCCCEEEEEe-CCCcEEEEECCCceeeee------eeCCccceEEEeeeeecCCCEEEEEEeCCCeE
Q 004214 237 GYNEEILDLKFLGEEEQYLAVAT-NIEQVQVYDLSSMSCSYV------LAGHSEIVLCLDTCALSSGKILIVTGSKDNSV 309 (768)
Q Consensus 237 ~~~~~i~~~~~~~~~~~~l~~~~-~~~~i~i~d~~~~~~~~~------~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i 309 (768)
.....+..++|......-+..+. .+..+..+......+... ......+|..+. ..++. |++|-.+|.+
T Consensus 53 ~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~----~~dg~-Litc~~sG~l 127 (412)
T KOG3881|consen 53 DELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLK----LADGT-LITCVSSGNL 127 (412)
T ss_pred chhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchh----hcCCE-EEEEecCCcE
Confidence 34556777888655555555555 666777777766655443 344556666663 23344 8889999999
Q ss_pred EEEeCCCce----EEEeeecccCcEEEEEEecCCCcEEEEEeCC--CeEEEEeCCCCCCCCccccccceeeEeeccCCCe
Q 004214 310 RLWDSESRC----CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSD--HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDI 383 (768)
Q Consensus 310 ~iwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i 383 (768)
.+|....+. .+..+..+ ..+..+.-++..+.++++|+.. ..+++||+......... ...+.-..-..-.-.+
T Consensus 128 ~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~a-KNvpnD~L~LrVPvW~ 205 (412)
T KOG3881|consen 128 QVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSA-KNVPNDRLGLRVPVWI 205 (412)
T ss_pred EEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeec-cCCCCccccceeeeee
Confidence 999987432 22222222 4566677777777788889998 88999999865211100 0000000001112346
Q ss_pred EEEEEccC--CCEEEEEeCCCcEEEEeCCCC-ceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEE-
Q 004214 384 NSLAVAPN--DSLVCTGSQDRTACVWRLPDL-VSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKT- 459 (768)
Q Consensus 384 ~~~~~s~~--~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~- 459 (768)
+++.|-|. ...||+++.-+.+++||.+.+ +++..+.-.+.+++++...|+++++++|..-|.+..||++.++.+..
T Consensus 206 tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~ 285 (412)
T KOG3881|consen 206 TDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCG 285 (412)
T ss_pred ccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccc
Confidence 78888887 889999999999999999865 57778888889999999999999999999999999999999998877
Q ss_pred eecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCC
Q 004214 460 FEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKK 517 (768)
Q Consensus 460 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~ 517 (768)
+.+..+.|+++..+|.+++|+++|-|..|+|+|+++.+++.... -...++++-+.++
T Consensus 286 ~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvY-vKs~lt~il~~~~ 342 (412)
T KOG3881|consen 286 LKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVY-VKSRLTFILLRDD 342 (412)
T ss_pred cCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhh-hhccccEEEecCC
Confidence 88999999999999999999999999999999999977776654 4456666666554
No 219
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.68 E-value=3.7e-15 Score=135.05 Aligned_cols=245 Identities=16% Similarity=0.265 Sum_probs=186.3
Q ss_pred cceeEEEEccCCCce---EEEEecCeEEEEeeccCccc--ceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEE
Q 004214 191 RGFTAATVLPSNQGL---LCVTADQQLLLYTTVEVPEK--KMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQ 265 (768)
Q Consensus 191 ~~~~~~~~~~~~~~l---~~~~~dg~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~ 265 (768)
-..+.+.|.|+.... +.++.+..+++|.+...... ............+..++++..|..-+.+++.+++-|-+..
T Consensus 97 YP~tK~~wiPd~~g~~pdlLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCT 176 (364)
T KOG0290|consen 97 YPVTKLMWIPDSKGVYPDLLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCT 176 (364)
T ss_pred CCccceEecCCccccCcchhhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEE
Confidence 455677788877533 66777889999998854221 1111222234556779999999999999999999999999
Q ss_pred EEECCCce---eeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEee---ecccCcEEEEEEecCC
Q 004214 266 VYDLSSMS---CSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVG---TGHMGAVGAVAFSKKL 339 (768)
Q Consensus 266 i~d~~~~~---~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~~~~~~~~ 339 (768)
|||++++. ....+-.|...|..++ |...+..+|++.+.||.+|+||++...--..+ .....+...++|++..
T Consensus 177 iWdie~~~~~~vkTQLIAHDKEV~DIa--f~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqD 254 (364)
T KOG0290|consen 177 IWDIETGVSGTVKTQLIAHDKEVYDIA--FLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQD 254 (364)
T ss_pred EEEEeeccccceeeEEEecCcceeEEE--eccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCC
Confidence 99999874 3567889999999998 77777788999999999999999875433332 2335678899999998
Q ss_pred CcEEEEEeCC-CeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCc----
Q 004214 340 QNFLVSGSSD-HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQDRTACVWRLPDLV---- 413 (768)
Q Consensus 340 ~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~---- 413 (768)
.+++++...| ..|.+.|++. ...+...+..|...|++++|.| ....|++++.|..+.+||+...-
T Consensus 255 pnymATf~~dS~~V~iLDiR~---------P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~ 325 (364)
T KOG0290|consen 255 PNYMATFAMDSNKVVILDIRV---------PCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENG 325 (364)
T ss_pred chHHhhhhcCCceEEEEEecC---------CCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCC
Confidence 8888887765 4588999985 4456777889999999999999 57789999999999999997542
Q ss_pred --eEEEEeccCCCeEEEEEccC-CCEEEEeeCCCcEEE
Q 004214 414 --SVVTFRGHKRGIWSVEFSPV-DQVVITASGDKTIKI 448 (768)
Q Consensus 414 --~~~~~~~~~~~v~~v~~s~~-~~~l~t~~~d~~i~i 448 (768)
++..+. ....|..+.|+|. +..++.+.. +.+.|
T Consensus 326 ~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~~-kklei 361 (364)
T KOG0290|consen 326 EDPILAYT-AGGEVNQIQWSSSQPDWIAICFG-KKLEI 361 (364)
T ss_pred CCchhhhh-ccceeeeeeecccCCCEEEEEec-CeeeE
Confidence 222222 5678999999974 567777755 44433
No 220
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=1.3e-14 Score=139.08 Aligned_cols=192 Identities=17% Similarity=0.194 Sum_probs=144.7
Q ss_pred eecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccc
Q 004214 292 ALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLK 371 (768)
Q Consensus 292 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 371 (768)
+..++.. +++|+.||++|+|+..+...+.....|.+.|.++.|+|+|+ +|++.+.| ..++|+...+.......
T Consensus 152 f~~~gs~-latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk-~lasig~d-~~~VW~~~~g~~~a~~t---- 224 (398)
T KOG0771|consen 152 FNGDGSK-LATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGK-FLASIGAD-SARVWSVNTGAALARKT---- 224 (398)
T ss_pred EcCCCCE-eeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCc-EEEEecCC-ceEEEEeccCchhhhcC----
Confidence 6666666 99999999999999888888888888999999999999977 79999999 89999998763211111
Q ss_pred eeeEeeccCCCeEEEEEccCC-----CEEEEEeCCCcEEEEeCCCCce-----EEEEeccCCCeEEEEEccCCCEEEEee
Q 004214 372 AKAVVAAHGKDINSLAVAPND-----SLVCTGSQDRTACVWRLPDLVS-----VVTFRGHKRGIWSVEFSPVDQVVITAS 441 (768)
Q Consensus 372 ~~~~~~~~~~~i~~~~~s~~~-----~~l~~~~~dg~i~i~d~~~~~~-----~~~~~~~~~~v~~v~~s~~~~~l~t~~ 441 (768)
....+.....+.|+.++ .+++....-+.|..|++..... ..........|++++.+++|++++.|+
T Consensus 225 ----~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT 300 (398)
T KOG0771|consen 225 ----PFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGT 300 (398)
T ss_pred ----CcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEec
Confidence 01222334566677665 3333344455677766543221 111112345799999999999999999
Q ss_pred CCCcEEEEeCCCCceeEEee-cCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECC
Q 004214 442 GDKTIKIWSISDGSCLKTFE-GHTSSVLRASFLTRGAQIVSCGADGLVKLWTVR 494 (768)
Q Consensus 442 ~d~~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 494 (768)
.||.|-|++..+-++++-++ .|...|+.+.|+|+.+++++.+.|....|..+.
T Consensus 301 ~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 301 MDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred cCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence 99999999998888776654 799999999999999999998888777776553
No 221
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.65 E-value=4.1e-14 Score=130.53 Aligned_cols=273 Identities=13% Similarity=0.188 Sum_probs=193.8
Q ss_pred ecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeeccc
Q 004214 248 LGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHM 327 (768)
Q Consensus 248 ~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 327 (768)
++++++++|++... .+.|-|..+.+..+.+.. -+.|.-+. +..+.-..+.....++.|.+|++...+-...+....
T Consensus 16 fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yie--W~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~ 91 (447)
T KOG4497|consen 16 FSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIE--WKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQ 91 (447)
T ss_pred ECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhhee--eeccceeeeeeeeccceEEEEEeecceeEEEeccCC
Confidence 34689999999885 888888888776654433 22333343 445555667778899999999999998888888888
Q ss_pred CcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCC-----
Q 004214 328 GAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDR----- 402 (768)
Q Consensus 328 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg----- 402 (768)
.++.+++|+|+|++++.+...+-.|.+|.+.+.. ..........+..++|+|+|++.+..+.-.
T Consensus 92 agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~-----------~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv 160 (447)
T KOG4497|consen 92 AGLSSISWSPDGRHILLTSEFDLRITVWSLNTQK-----------GYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYV 160 (447)
T ss_pred CcceeeeECCCcceEeeeecceeEEEEEEeccce-----------eEEecccccCceeEEECCCCceeeeeecccHHHHH
Confidence 9999999999999999999999999999987431 111122223456778888887777665421
Q ss_pred -------------------------------cEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeC
Q 004214 403 -------------------------------TACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSI 451 (768)
Q Consensus 403 -------------------------------~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~ 451 (768)
.+.+||..-.-.+. .....-++..+.|+|.+++|++|+.|+.+||.+-
T Consensus 161 ~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~-aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh 239 (447)
T KOG4497|consen 161 QISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVY-AYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNH 239 (447)
T ss_pred HHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheee-eeeeccceeEEEeccccceEEeeccchhhhhhce
Confidence 12233321111111 1113357889999999999999999999988664
Q ss_pred CCCceeEE------------------------------------------------------------ee------cCCC
Q 004214 452 SDGSCLKT------------------------------------------------------------FE------GHTS 465 (768)
Q Consensus 452 ~~~~~~~~------------------------------------------------------------~~------~~~~ 465 (768)
-+.++... ++ ....
T Consensus 240 ~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~ 319 (447)
T KOG4497|consen 240 FTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKC 319 (447)
T ss_pred eeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCccc
Confidence 32221111 00 1123
Q ss_pred cEEEEEEEeCCCEEEEEeCC--CcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 004214 466 SVLRASFLTRGAQIVSCGAD--GLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDST 537 (768)
Q Consensus 466 ~v~~~~~s~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~ 537 (768)
.+-.++|++|..|+++-.+. ..+-+||++..+....+. ...+|.+..|+|....|+.+.....+++|....
T Consensus 320 g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vctg~srLY~W~psg 392 (447)
T KOG4497|consen 320 GAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSG 392 (447)
T ss_pred ccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEEcCCceEEEEcCCC
Confidence 46668999999999887653 479999998877666664 677899999999999999888888899998764
No 222
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.65 E-value=4.1e-16 Score=150.15 Aligned_cols=231 Identities=17% Similarity=0.212 Sum_probs=192.2
Q ss_pred eEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCC
Q 004214 285 VLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDA 364 (768)
Q Consensus 285 v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 364 (768)
.+.+. +..+|.. ++.|+..|.|..+|..++.+...+.. ...|..+.|..+.. +++......+.+||-.+.
T Consensus 132 PY~~~--ytrnGrh-lllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq--~~AVAQK~y~yvYD~~Gt---- 201 (545)
T KOG1272|consen 132 PYHLD--YTRNGRH-LLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQ--FFAVAQKKYVYVYDNNGT---- 201 (545)
T ss_pred Ceeee--ecCCccE-EEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchH--HHHhhhhceEEEecCCCc----
Confidence 34454 6666776 88899999999999999998877653 45678888887644 455567788999986543
Q ss_pred ccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCC
Q 004214 365 EQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDK 444 (768)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~ 444 (768)
....+.. ...|..+.|-|..-+|++++..|.++.-|+.+|+.+..+..-.+.+..++-+|-+..+-+|...|
T Consensus 202 -------ElHClk~-~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnG 273 (545)
T KOG1272|consen 202 -------ELHCLKR-HIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNG 273 (545)
T ss_pred -------EEeehhh-cCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCc
Confidence 2222222 35688999999999999999999999999999999999998889999999999999999999999
Q ss_pred cEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEE
Q 004214 445 TIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATG 524 (768)
Q Consensus 445 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~ 524 (768)
+|.+|.....+++..+..|.++|.++++.++|+|++|++.|..++|||++....+.++.. ..+...+++|..| +++.
T Consensus 274 tVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg--lLA~ 350 (545)
T KOG1272|consen 274 TVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG--LLAL 350 (545)
T ss_pred eEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccccc--ceee
Confidence 999999999999999999999999999999999999999999999999999988887764 5667788888766 4455
Q ss_pred eCCCcEEEEEcC
Q 004214 525 GSDALVNLWHDS 536 (768)
Q Consensus 525 ~~dg~v~vw~~~ 536 (768)
|....|.||...
T Consensus 351 ~~G~~v~iw~d~ 362 (545)
T KOG1272|consen 351 SYGDHVQIWKDA 362 (545)
T ss_pred ecCCeeeeehhh
Confidence 555679999753
No 223
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=8.7e-13 Score=130.99 Aligned_cols=357 Identities=17% Similarity=0.187 Sum_probs=215.6
Q ss_pred CCcEEEEECCCCEEEEEEEcC---CCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCC
Q 004214 9 DRKVLVWDVDGGFCTHYFKGH---KGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSD 85 (768)
Q Consensus 9 dg~i~vwd~~~~~~~~~l~gh---~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d 85 (768)
.-.+.+|+...........++ .......++|++|+ ++..+.+..|+|++..++..+.+...- .+.++.|||-
T Consensus 10 Se~~~l~~~~~~~~~~~~f~~~~~~~~~~v~~~S~~G~---lfA~~~~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~ 84 (566)
T KOG2315|consen 10 SEGFYLFNGPGSKDAVTVFEQNKTSRPCNVFAYSNNGR---LFAYSDNQVVKVFEIATLKVVLCVELK--KTYDLLFSPK 84 (566)
T ss_pred cceeEEeccCCccccccccccCCCCCcceeEEEcCCCc---EEEEEcCCeEEEEEccCCcEEEEeccc--eeeeeeeccc
Confidence 445677777554333333333 34567888999887 555666788999999888655444433 6899999999
Q ss_pred CCEEEEEe-----C-----CCeEEEEECCCCeeeeeeecceeE-eeEEecCCCCCccccccccchhhhhcccCCcceEEE
Q 004214 86 GSTLISAG-----R-----DKVVNLWDLRDYSCKLTVPTYEMV-EAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFI 154 (768)
Q Consensus 86 ~~~L~s~~-----~-----dg~i~vWd~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (768)
|.+|.+-- . ...+.+|+++++.....+.....- ....|+.+....+
T Consensus 85 g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~a----------------------- 141 (566)
T KOG2315|consen 85 GNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLAA----------------------- 141 (566)
T ss_pred ccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcCcccccccchhhhh-----------------------
Confidence 99998631 1 235789999986655555433221 3444444443211
Q ss_pred EeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEee
Q 004214 155 TVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKR 234 (768)
Q Consensus 155 ~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~ 234 (768)
--..+.+.+|++.+.... .
T Consensus 142 -rlv~nev~f~~~~~f~~~------------------------------------------------------------~ 160 (566)
T KOG2315|consen 142 -RLVSNEVQFYDLGSFKTI------------------------------------------------------------Q 160 (566)
T ss_pred -hhhcceEEEEecCCccce------------------------------------------------------------e
Confidence 111223444444332000 0
Q ss_pred ecccCCceeEEEEecC-CCCEEEE-----EeCCCcEEEEECCCceeeeeee--C--CccceEEEeeeeecCCCEEEEEEe
Q 004214 235 LVGYNEEILDLKFLGE-EEQYLAV-----ATNIEQVQVYDLSSMSCSYVLA--G--HSEIVLCLDTCALSSGKILIVTGS 304 (768)
Q Consensus 235 ~~~~~~~i~~~~~~~~-~~~~l~~-----~~~~~~i~i~d~~~~~~~~~~~--~--~~~~v~~l~~~~~~~~~~~l~~~~ 304 (768)
..-+...|..+.+++. ....+|+ .+.-+.++||..........+. . ..+.| .+. |...+.-+|+.++
T Consensus 161 ~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkv-qm~--WN~~gt~LLvLas 237 (566)
T KOG2315|consen 161 HKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKV-QMK--WNKLGTALLVLAS 237 (566)
T ss_pred eeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhcccccccee-EEE--eccCCceEEEEEE
Confidence 0011233444444443 2333333 2334677888765222111110 0 01111 121 4444444444433
Q ss_pred C-----------CCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEe-CCCeEEEEeCCCCCCCCccccccce
Q 004214 305 K-----------DNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGS-SDHTIKVWSFDGLSDDAEQPMNLKA 372 (768)
Q Consensus 305 ~-----------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~ 372 (768)
. ..++++.+++...+... -.-.++|.++.|+|++..+.++-+ .-..+.|||++.
T Consensus 238 tdVDktn~SYYGEq~Lyll~t~g~s~~V~-L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~------------- 303 (566)
T KOG2315|consen 238 TDVDKTNASYYGEQTLYLLATQGESVSVP-LLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG------------- 303 (566)
T ss_pred EeecCCCccccccceEEEEEecCceEEEe-cCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCC-------------
Confidence 2 23678888774333332 235799999999999887655544 456789998873
Q ss_pred eeEeeccCCCeEEEEEccCCCEEEEEeCC---CcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeC------C
Q 004214 373 KAVVAAHGKDINSLAVAPNDSLVCTGSQD---RTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASG------D 443 (768)
Q Consensus 373 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~------d 443 (768)
...+.-..++=+++-|+|.|++++.++-+ |.+-+||+.+.+.+..+... .-+-+.|+|||++++|+.. |
T Consensus 304 ~~v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~--~tt~~eW~PdGe~flTATTaPRlrvd 381 (566)
T KOG2315|consen 304 KPVFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAA--NTTVFEWSPDGEYFLTATTAPRLRVD 381 (566)
T ss_pred CEeEeCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccC--CceEEEEcCCCcEEEEEeccccEEec
Confidence 33334455667899999999999988754 78999999998888877643 3456899999999999876 6
Q ss_pred CcEEEEeCCCCceeEEeecCCCcEEEEEEEeC
Q 004214 444 KTIKIWSISDGSCLKTFEGHTSSVLRASFLTR 475 (768)
Q Consensus 444 ~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~ 475 (768)
+.++||+. +|..+....-. .....+.|-|.
T Consensus 382 Ng~Kiwhy-tG~~l~~~~f~-sEL~qv~W~P~ 411 (566)
T KOG2315|consen 382 NGIKIWHY-TGSLLHEKMFK-SELLQVEWRPF 411 (566)
T ss_pred CCeEEEEe-cCceeehhhhh-HhHhheeeeec
Confidence 78999997 67666543311 15667788764
No 224
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=1.6e-14 Score=152.97 Aligned_cols=211 Identities=14% Similarity=0.082 Sum_probs=147.4
Q ss_pred CCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCC---CeEEEEeCCCCCCCCccccccceeeEeeccCCC
Q 004214 306 DNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSD---HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKD 382 (768)
Q Consensus 306 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (768)
+..|.+||..... ...+..|...+.+.+|+|+|+. ++.++.+ ..|.+||+..+.. ..... ....
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~-la~~s~~~~~~~i~i~dl~tg~~--------~~l~~---~~g~ 249 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSK-LAYVSFENKKSQLVVHDLRSGAR--------KVVAS---FRGH 249 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCE-EEEEEecCCCcEEEEEeCCCCce--------EEEec---CCCc
Confidence 4689999987655 3455677888999999999885 5554432 4799999875421 11111 1223
Q ss_pred eEEEEEccCCCEEEEEe-CCCcEEEE--eCCCCceEEEEeccCCCeEEEEEccCCCEEEEee-CCCcEEEEeCCCC-cee
Q 004214 383 INSLAVAPNDSLVCTGS-QDRTACVW--RLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITAS-GDKTIKIWSISDG-SCL 457 (768)
Q Consensus 383 i~~~~~s~~~~~l~~~~-~dg~i~i~--d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~-~d~~i~iwd~~~~-~~~ 457 (768)
..+++|+|||+.|+.++ .+|.+.|| |+.++. ...+..+...+.+..|+|||+.|+.++ .++...||++... ...
T Consensus 250 ~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~ 328 (429)
T PRK01742 250 NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGA 328 (429)
T ss_pred cCceeECCCCCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCe
Confidence 34689999999888765 67765555 665554 345666777788999999999776554 5788888876432 222
Q ss_pred EEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 004214 458 KTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDS 536 (768)
Q Consensus 458 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~ 536 (768)
..+ ++.. ....|+|+|++|+.++.++ +.+||+.+++.......+ ...++.|+|+|++|+.++.+|...+|.+.
T Consensus 329 ~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~ 401 (429)
T PRK01742 329 SLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLV 401 (429)
T ss_pred EEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEE
Confidence 333 3443 4578999999998887765 566999988765333222 33567899999999999999988888753
No 225
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.64 E-value=1.4e-14 Score=133.33 Aligned_cols=209 Identities=16% Similarity=0.255 Sum_probs=172.5
Q ss_pred ecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCc
Q 004214 324 TGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRT 403 (768)
Q Consensus 324 ~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~ 403 (768)
..-..+|+|.+|+++.. .++.+.....|.||.....+ ......++..|...|+.++|+|..+.|++++.|..
T Consensus 7 ~~~~~pitchAwn~drt-~iAv~~~~~evhiy~~~~~~-------~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drn 78 (361)
T KOG1523|consen 7 HRLLEPITCHAWNSDRT-QIAVSPNNHEVHIYSMLGAD-------LWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRN 78 (361)
T ss_pred eeccCceeeeeecCCCc-eEEeccCCceEEEEEecCCC-------CceeceehhhhCcceeEEeecCCCCceeEccCCCC
Confidence 33467899999999965 78999999999999987542 25577788899999999999999999999999999
Q ss_pred EEEEeCCC---CceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCce----eEEeecCCCcEEEEEEEeCC
Q 004214 404 ACVWRLPD---LVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSC----LKTFEGHTSSVLRASFLTRG 476 (768)
Q Consensus 404 i~i~d~~~---~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~----~~~~~~~~~~v~~~~~s~~~ 476 (768)
-++|...+ .++...+..++...+++.|+|.++.+|+|+....|.||-++...- -+.-+.+...|+++.|+|++
T Consensus 79 ayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnn 158 (361)
T KOG1523|consen 79 AYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNN 158 (361)
T ss_pred ccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCc
Confidence 99999843 256667777999999999999999999999999999988754321 12233577899999999999
Q ss_pred CEEEEEeCCCcEEEEEC-----C-------------CCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCH
Q 004214 477 AQIVSCGADGLVKLWTV-----R-------------TGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTA 538 (768)
Q Consensus 477 ~~l~s~~~dg~i~iwd~-----~-------------~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~ 538 (768)
-+|++|+.|+..+||.. + -|+.+..+....+.|..+.|+|+|..|+-.+.|+.+.+=|...+
T Consensus 159 VLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p 238 (361)
T KOG1523|consen 159 VLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGP 238 (361)
T ss_pred ceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCC
Confidence 99999999999999863 1 13344455456678999999999999999999999999887766
Q ss_pred HH
Q 004214 539 AE 540 (768)
Q Consensus 539 ~~ 540 (768)
.+
T Consensus 239 ~~ 240 (361)
T KOG1523|consen 239 SE 240 (361)
T ss_pred ch
Confidence 43
No 226
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.62 E-value=3e-14 Score=139.98 Aligned_cols=211 Identities=19% Similarity=0.279 Sum_probs=148.8
Q ss_pred cceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECC
Q 004214 191 RGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLS 270 (768)
Q Consensus 191 ~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~ 270 (768)
..+....-.+.+-.++++-..|.+.+++....+. .........-....++++.|.+.++..++++-.+|.+++||..
T Consensus 174 Hdfn~~~a~~~g~dllIGf~tGqvq~idp~~~~~---sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~ 250 (636)
T KOG2394|consen 174 HDFNSFTATPKGLDLLIGFTTGQVQLIDPINFEV---SKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKE 250 (636)
T ss_pred ecccccccCCCCcceEEeeccCceEEecchhhHH---HHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeecc
Confidence 3444445567777889999999999888665221 1112222233347899999999999999999999999999972
Q ss_pred CceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCC
Q 004214 271 SMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDH 350 (768)
Q Consensus 271 ~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg 350 (768)
- ..+.+.+- +...+.+.. +.....-+ ..+..++..+.--.+.|...+|+|||+ +|++.+.||
T Consensus 251 ~------~~~~t~p~----~~~~k~~~~-f~i~t~ks------k~~rNPv~~w~~~~g~in~f~FS~DG~-~LA~VSqDG 312 (636)
T KOG2394|consen 251 I------VCGATAPS----YQALKDGDQ-FAILTSKS------KKTRNPVARWHIGEGSINEFAFSPDGK-YLATVSQDG 312 (636)
T ss_pred c------cccCCCCc----ccccCCCCe-eEEeeeec------cccCCccceeEeccccccceeEcCCCc-eEEEEecCc
Confidence 1 11111111 113334433 33221111 111133333334456899999999977 899999999
Q ss_pred eEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEE
Q 004214 351 TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEF 430 (768)
Q Consensus 351 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~ 430 (768)
.++|||+.. ..........-+...|++|||||++|++|+.|.-|.||.+...+.+..-.+|...|..|+|
T Consensus 313 fLRvF~fdt----------~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaF 382 (636)
T KOG2394|consen 313 FLRIFDFDT----------QELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAF 382 (636)
T ss_pred eEEEeeccH----------HHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEee
Confidence 999999973 3334444445578899999999999999999999999999999999999999999999999
Q ss_pred cc
Q 004214 431 SP 432 (768)
Q Consensus 431 s~ 432 (768)
.|
T Consensus 383 Dp 384 (636)
T KOG2394|consen 383 DP 384 (636)
T ss_pred cc
Confidence 83
No 227
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=8.5e-14 Score=130.23 Aligned_cols=227 Identities=16% Similarity=0.197 Sum_probs=157.5
Q ss_pred EEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCcc--cccc--ceee
Q 004214 299 LIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQ--PMNL--KAKA 374 (768)
Q Consensus 299 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~--~~~~ 374 (768)
-++++..|-.|++|+-....+...-......|++++|-|.+..-++.|+..| |.+|..+........ -... ....
T Consensus 112 ~fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl 190 (445)
T KOG2139|consen 112 AFAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVL 190 (445)
T ss_pred hhhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccccchhhe
Confidence 3788899999999998874433333345678999999999888888888765 899987643221110 0000 0111
Q ss_pred EeeccCCCeEEEEEccCCCEEEEEeC-CCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCC-
Q 004214 375 VVAAHGKDINSLAVAPNDSLVCTGSQ-DRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSIS- 452 (768)
Q Consensus 375 ~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~- 452 (768)
...+| .+|+++.|.+||..+++++. |..|.|||..++..+.-.....+.++-+.||||+.+|+++.-|+..++|+..
T Consensus 191 ~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q 269 (445)
T KOG2139|consen 191 QDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQ 269 (445)
T ss_pred eCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcc
Confidence 12233 78999999999999999885 5689999999987766554456788999999999999999999999999643
Q ss_pred CCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCC----Ce-----------EEEEe-----cc----CCCc
Q 004214 453 DGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRT----GE-----------CIATY-----DK----HEDK 508 (768)
Q Consensus 453 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~----~~-----------~~~~~-----~~----~~~~ 508 (768)
+..+.+-.- ..+.|...+|+|.|++|+-+.. |.-++|.+.. +. .+..+ .. -.++
T Consensus 270 ~wt~erw~l-gsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cge 347 (445)
T KOG2139|consen 270 SWTKERWIL-GSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGE 347 (445)
T ss_pred cceecceec-cCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCc
Confidence 444444433 3458999999999997754443 3334444321 10 11111 11 1467
Q ss_pred EEEEEEcCCCCEEEEEeCCCc
Q 004214 509 IWALAVGKKTEMFATGGSDAL 529 (768)
Q Consensus 509 v~~l~~s~~~~~l~s~~~dg~ 529 (768)
+.+++|.|.|++||+....+.
T Consensus 348 aq~lawDpsGeyLav~fKg~~ 368 (445)
T KOG2139|consen 348 AQCLAWDPSGEYLAVIFKGQS 368 (445)
T ss_pred cceeeECCCCCEEEEEEcCCc
Confidence 889999999999998765543
No 228
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.62 E-value=1.8e-12 Score=127.18 Aligned_cols=365 Identities=16% Similarity=0.183 Sum_probs=219.7
Q ss_pred EEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEE
Q 004214 13 LVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISA 92 (768)
Q Consensus 13 ~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~ 92 (768)
.+|+..+...-..+....-++..++|||.|.+ |++....| |.+|.-..+..+..+. |.. |..+.|||.++||.+-
T Consensus 15 ~f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~--l~~~~~~~-V~~~~g~~~~~l~~~~-~~~-V~~~~fSP~~kYL~tw 89 (561)
T COG5354 15 VFWNSQSEVIHTRFESENWPVAYVSESPLGTY--LFSEHAAG-VECWGGPSKAKLVRFR-HPD-VKYLDFSPNEKYLVTW 89 (561)
T ss_pred EeecCccccccccccccCcchhheeecCcchh--eehhhccc-eEEccccchhheeeee-cCC-ceecccCcccceeeee
Confidence 34555555433344446778999999999998 77776666 9999988877666665 444 8999999999999997
Q ss_pred eCCCe---------------EEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEee
Q 004214 93 GRDKV---------------VNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVG 157 (768)
Q Consensus 93 ~~dg~---------------i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (768)
+..+. +.+||..++..+..+......
T Consensus 90 ~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~--------------------------------------- 130 (561)
T COG5354 90 SREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQP--------------------------------------- 130 (561)
T ss_pred ccCCccChhhccCCccccCceeEEeccCceeEeeccccCCc---------------------------------------
Confidence 75443 555555555544444322110
Q ss_pred CCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecc
Q 004214 158 ERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVG 237 (768)
Q Consensus 158 ~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~ 237 (768)
..+...+.|+-+....+-. ....+.++.+...-. ......+
T Consensus 131 --------------------------------~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~t~n~~----~~p~~~l-- 171 (561)
T COG5354 131 --------------------------------YLGWPVLKFSIDDKYVARV-VGSSLYIHEITDNIE----EHPFKNL-- 171 (561)
T ss_pred --------------------------------ccccceeeeeecchhhhhh-ccCeEEEEecCCccc----cCchhhc--
Confidence 0122223333333333222 344555555421110 0000000
Q ss_pred cCCceeEEEEecC-CCCEEEE-----EeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEe-------
Q 004214 238 YNEEILDLKFLGE-EEQYLAV-----ATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGS------- 304 (768)
Q Consensus 238 ~~~~i~~~~~~~~-~~~~l~~-----~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~------- 304 (768)
....+.+..++|. +...||. ....+.+++|.+..+..+..-.-..-.-..+. +.+.+..+++-.-
T Consensus 172 r~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLk--W~~~g~~ll~l~~t~~ksnK 249 (561)
T COG5354 172 RPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLK--WQVLGKYLLVLVMTHTKSNK 249 (561)
T ss_pred cccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEE--EecCCceEEEEEEEeeeccc
Confidence 1245566666664 3344444 23467888998876655433211111111222 4444444332211
Q ss_pred ---CCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEE-eCCCeEEEEeCCCCCCCCccccccceeeEeeccC
Q 004214 305 ---KDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSG-SSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHG 380 (768)
Q Consensus 305 ---~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 380 (768)
....++++++....+.... .-.++|...+|.|.++.+.+.. -.+..+.++|++.. .......
T Consensus 250 syfgesnLyl~~~~e~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-------------l~~~~Pe 315 (561)
T COG5354 250 SYFGESNLYLLRITERSIPVEK-DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-------------LRFYFPE 315 (561)
T ss_pred ceeccceEEEEeecccccceec-cccccceeeeecccCCceeEEecccccceeecccccc-------------eEEecCC
Confidence 1346788888754443332 5689999999999987654443 56788889988742 1222233
Q ss_pred CCeEEEEEccCCCEEEEEeCC---CcEEEEeCCCCceEE-EEeccCCCeEEEEEccCCCEEEEeeC------CCcEEEEe
Q 004214 381 KDINSLAVAPNDSLVCTGSQD---RTACVWRLPDLVSVV-TFRGHKRGIWSVEFSPVDQVVITASG------DKTIKIWS 450 (768)
Q Consensus 381 ~~i~~~~~s~~~~~l~~~~~d---g~i~i~d~~~~~~~~-~~~~~~~~v~~v~~s~~~~~l~t~~~------d~~i~iwd 450 (768)
..=+.+.|+|.+++++.++-| |.+-+||......+. .+.+. ..+-+.|+|+++++.++.. |..|.|||
T Consensus 316 ~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~--n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~ 393 (561)
T COG5354 316 QKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL--NTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWD 393 (561)
T ss_pred cccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecC--CceEeeccCCceEEEecCCCcccccCcceEEEE
Confidence 444678899999999998765 579999987654443 55543 3455789999999888753 77899999
Q ss_pred CCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCC
Q 004214 451 ISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADG 486 (768)
Q Consensus 451 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 486 (768)
+.... +. ..+.+.|.|.|++..+.+.++
T Consensus 394 v~g~~-~f-------el~~~~W~p~~~~~ttsSs~~ 421 (561)
T COG5354 394 VYGAK-VF-------ELTNITWDPSGQYVTTSSSCP 421 (561)
T ss_pred ecCch-hh-------hhhhccccCCcccceeeccCC
Confidence 85332 22 456688999888887777665
No 229
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=1.5e-13 Score=136.18 Aligned_cols=195 Identities=16% Similarity=0.219 Sum_probs=147.5
Q ss_pred eEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEe
Q 004214 243 LDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGV 322 (768)
Q Consensus 243 ~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 322 (768)
.+++++.++..++++|+. ..|+-++++.|..+..+....+.+.++. ..+-.+ +|++|+.+|.|..||.+....+..
T Consensus 137 RDm~y~~~scDly~~gsg-~evYRlNLEqGrfL~P~~~~~~~lN~v~--in~~hg-Lla~Gt~~g~VEfwDpR~ksrv~~ 212 (703)
T KOG2321|consen 137 RDMKYHKPSCDLYLVGSG-SEVYRLNLEQGRFLNPFETDSGELNVVS--INEEHG-LLACGTEDGVVEFWDPRDKSRVGT 212 (703)
T ss_pred ccccccCCCccEEEeecC-cceEEEEccccccccccccccccceeee--ecCccc-eEEecccCceEEEecchhhhhhee
Confidence 455565556666666655 7888899999999988888888888886 545555 599999999999999988766655
Q ss_pred ee------cccC-----cEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccC
Q 004214 323 GT------GHMG-----AVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN 391 (768)
Q Consensus 323 ~~------~~~~-----~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 391 (768)
+. .|.+ .|+++.|+.+|- .+++|+.+|.|.|||++...+ ....-.....+|..+.|.+.
T Consensus 213 l~~~~~v~s~pg~~~~~svTal~F~d~gL-~~aVGts~G~v~iyDLRa~~p---------l~~kdh~~e~pi~~l~~~~~ 282 (703)
T KOG2321|consen 213 LDAASSVNSHPGGDAAPSVTALKFRDDGL-HVAVGTSTGSVLIYDLRASKP---------LLVKDHGYELPIKKLDWQDT 282 (703)
T ss_pred eecccccCCCccccccCcceEEEecCCce-eEEeeccCCcEEEEEcccCCc---------eeecccCCccceeeeccccc
Confidence 43 2333 499999999855 699999999999999985421 22222334567888999875
Q ss_pred --CCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCC
Q 004214 392 --DSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISD 453 (768)
Q Consensus 392 --~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~ 453 (768)
+..+++ .....++|||-.+++....+.. ...+..+|+-|++.++++|-.++.+..|=+..
T Consensus 283 ~~q~~v~S-~Dk~~~kiWd~~~Gk~~asiEp-t~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 283 DQQNKVVS-MDKRILKIWDECTGKPMASIEP-TSDLNDFCFVPGSGMFFTANESSKMHTYYIPS 344 (703)
T ss_pred CCCceEEe-cchHHhhhcccccCCceeeccc-cCCcCceeeecCCceEEEecCCCcceeEEccc
Confidence 344444 4457899999999999888874 45699999999999999998888777766543
No 230
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=5.4e-12 Score=125.48 Aligned_cols=264 Identities=14% Similarity=0.190 Sum_probs=171.7
Q ss_pred CcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCc
Q 004214 262 EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQN 341 (768)
Q Consensus 262 ~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 341 (768)
..+.+|+++++.....+......-++.. |..+. . +++--..+.+.+|+..+.+... ..-|...|+.+.++|.+..
T Consensus 105 pn~~v~~vet~~~~s~~q~k~Q~~W~~q--fs~dE-s-l~arlv~nev~f~~~~~f~~~~-~kl~~~~i~~f~lSpgp~~ 179 (566)
T KOG2315|consen 105 PNVLVYNVETGVQRSQIQKKMQNGWVPQ--FSIDE-S-LAARLVSNEVQFYDLGSFKTIQ-HKLSVSGITMLSLSPGPEP 179 (566)
T ss_pred CceeeeeeccceehhheehhhhcCcccc--cccch-h-hhhhhhcceEEEEecCCcccee-eeeeccceeeEEecCCCCC
Confidence 5677888877554444443332224554 33333 3 4444446789999988743332 2346788999999987443
Q ss_pred -EEEE-----EeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCE-EEE--EeCC---------Cc
Q 004214 342 -FLVS-----GSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSL-VCT--GSQD---------RT 403 (768)
Q Consensus 342 -~l~s-----~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~-l~~--~~~d---------g~ 403 (768)
.+++ .+.-+.|++|.+....... ....... ...+-..+.|++-|.- |+. ..-| .+
T Consensus 180 ~~vAvyvPe~kGaPa~vri~~~~~~~~~~----~~a~ksF---Fkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~ 252 (566)
T KOG2315|consen 180 PFVAVYVPEKKGAPASVRIYKYPEEGQHQ----PVANKSF---FKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQT 252 (566)
T ss_pred ceEEEEccCCCCCCcEEEEeccccccccc----hhhhccc---cccceeEEEeccCCceEEEEEEEeecCCCccccccce
Confidence 3333 3456789999887321111 0001111 1123345677775542 222 2223 36
Q ss_pred EEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEe--eCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEE
Q 004214 404 ACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITA--SGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVS 481 (768)
Q Consensus 404 i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~--~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 481 (768)
++++++........+. ..++|.++.|+|+++-+++. -.-..+.|||+ .+.++..| ..++-+++-|+|.|++++.
T Consensus 253 Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnl-r~~~v~df--~egpRN~~~fnp~g~ii~l 328 (566)
T KOG2315|consen 253 LYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNL-RGKPVFDF--PEGPRNTAFFNPHGNIILL 328 (566)
T ss_pred EEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcC-CCCEeEeC--CCCCccceEECCCCCEEEE
Confidence 8888877434433333 57899999999999766654 45668999998 46666666 5677788999999999988
Q ss_pred EeC---CCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeC------CCcEEEEEcCCHHHHHH
Q 004214 482 CGA---DGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGS------DALVNLWHDSTAAEREE 543 (768)
Q Consensus 482 ~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~------dg~v~vw~~~~~~~~~~ 543 (768)
+|- -|.|-|||+.+.+++..+..... +-+.|+|||++++|+.. |..++||+.......+.
T Consensus 329 AGFGNL~G~mEvwDv~n~K~i~~~~a~~t--t~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~~~ 397 (566)
T KOG2315|consen 329 AGFGNLPGDMEVWDVPNRKLIAKFKAANT--TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLHEK 397 (566)
T ss_pred eecCCCCCceEEEeccchhhccccccCCc--eEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceeehh
Confidence 876 47899999999999999875544 44789999999999875 67789999876544333
No 231
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=4.3e-13 Score=133.04 Aligned_cols=282 Identities=15% Similarity=0.184 Sum_probs=197.4
Q ss_pred ccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCC
Q 004214 237 GYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES 316 (768)
Q Consensus 237 ~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 316 (768)
.+....+.+..++++...+|+|.....|++||+........-......|.-. ..+++-.-++.-..|.+|.+....
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~fe---iLsDD~SK~v~L~~DR~IefHak~- 124 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFE---ILSDDYSKSVFLQNDRTIEFHAKY- 124 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEE---EeccchhhheEeecCceeeehhhc-
Confidence 4555667788887777788899999999999998876654443333444333 333332224445556666554322
Q ss_pred ceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEE
Q 004214 317 RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVC 396 (768)
Q Consensus 317 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 396 (768)
|.....- -...-..++++..... |+.++....|.-+++..+. ....+......++++.+++-..+|+
T Consensus 125 G~hy~~R--IP~~GRDm~y~~~scD-ly~~gsg~evYRlNLEqGr----------fL~P~~~~~~~lN~v~in~~hgLla 191 (703)
T KOG2321|consen 125 GRHYRTR--IPKFGRDMKYHKPSCD-LYLVGSGSEVYRLNLEQGR----------FLNPFETDSGELNVVSINEEHGLLA 191 (703)
T ss_pred Ceeeeee--cCcCCccccccCCCcc-EEEeecCcceEEEEccccc----------cccccccccccceeeeecCccceEE
Confidence 1111110 1122244555544343 4444445567777777542 2333344457899999999999999
Q ss_pred EEeCCCcEEEEeCCCCceEEEEec------cCC-----CeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEee-cCC
Q 004214 397 TGSQDRTACVWRLPDLVSVVTFRG------HKR-----GIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFE-GHT 464 (768)
Q Consensus 397 ~~~~dg~i~i~d~~~~~~~~~~~~------~~~-----~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~-~~~ 464 (768)
+|+.+|.|.+||.++...+..+.. |.+ .|+++.|+.+|-.+++|..+|.|.|||++..+++..-. +..
T Consensus 192 ~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e 271 (703)
T KOG2321|consen 192 CGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYE 271 (703)
T ss_pred ecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCc
Confidence 999999999999988776665543 222 49999999999999999999999999999988876554 344
Q ss_pred CcEEEEEEEeC--CCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 004214 465 SSVLRASFLTR--GAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDST 537 (768)
Q Consensus 465 ~~v~~~~~s~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~ 537 (768)
-+|..+.|.+. ++.+++. ....++|||-.+|+....+. ....+..+++-|++-+++++-.++.+..|-+..
T Consensus 272 ~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiE-pt~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 272 LPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIE-PTSDLNDFCFVPGSGMFFTANESSKMHTYYIPS 344 (703)
T ss_pred cceeeecccccCCCceEEec-chHHhhhcccccCCceeecc-ccCCcCceeeecCCceEEEecCCCcceeEEccc
Confidence 57888999775 3445544 34689999999999999987 566699999999999999999999887776543
No 232
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.58 E-value=9.6e-12 Score=114.96 Aligned_cols=237 Identities=18% Similarity=0.241 Sum_probs=153.8
Q ss_pred cEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccc--eeEEEEEcCCCCEEEEEe-CC------CeEEEEE
Q 004214 32 VVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFS--RVTSMAITSDGSTLISAG-RD------KVVNLWD 102 (768)
Q Consensus 32 ~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~--~V~~l~fs~d~~~L~s~~-~d------g~i~vWd 102 (768)
...+++|+.|... ++.|.++| .+||+.+.-+.......+.+ .+..|-|- .++|+-.| .. +.|.|||
T Consensus 7 ~~lsvs~NQD~Sc--Fava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR--~N~laLVGGg~~pky~pNkviIWD 81 (346)
T KOG2111|consen 7 KTLSVSFNQDHSC--FAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFR--SNYLALVGGGSRPKYPPNKVIIWD 81 (346)
T ss_pred ceeEEEEccCCce--EEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhh--hceEEEecCCCCCCCCCceEEEEe
Confidence 3445899998776 77777777 89999876444333332333 23333343 45665443 22 4799999
Q ss_pred CCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceee
Q 004214 103 LRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTI 182 (768)
Q Consensus 103 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~ 182 (768)
=...+++.++....++.++.+.++. +++. -.+.|.+|.....
T Consensus 82 D~k~~~i~el~f~~~I~~V~l~r~r-------------------------iVvv-l~~~I~VytF~~n------------ 123 (346)
T KOG2111|consen 82 DLKERCIIELSFNSEIKAVKLRRDR-------------------------IVVV-LENKIYVYTFPDN------------ 123 (346)
T ss_pred cccCcEEEEEEeccceeeEEEcCCe-------------------------EEEE-ecCeEEEEEcCCC------------
Confidence 8888888888888888888776642 2222 2234555544322
Q ss_pred cccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEec-CCCCEEEE-EeC
Q 004214 183 SFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLG-EEEQYLAV-ATN 260 (768)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~l~~-~~~ 260 (768)
+...... ... ..... -++..+ .+..+||. |..
T Consensus 124 ----------------------------------------~k~l~~~---et~-~NPkG--lC~~~~~~~k~~LafPg~k 157 (346)
T KOG2111|consen 124 ----------------------------------------PKLLHVI---ETR-SNPKG--LCSLCPTSNKSLLAFPGFK 157 (346)
T ss_pred ----------------------------------------hhheeee---ecc-cCCCc--eEeecCCCCceEEEcCCCc
Confidence 2100000 000 00001 111111 22233333 445
Q ss_pred CCcEEEEECCCcee--eeeeeCCccceEEEeeeeecCCCEEEEEEeCCCe-EEEEeCCCceEEEeeec--ccCcEEEEEE
Q 004214 261 IEQVQVYDLSSMSC--SYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNS-VRLWDSESRCCVGVGTG--HMGAVGAVAF 335 (768)
Q Consensus 261 ~~~i~i~d~~~~~~--~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~--~~~~v~~~~~ 335 (768)
-|+|+|-|+..... ...+..|...|.|++ ..-+|. ++||++..|+ |||||..+|..+..+.. ....|.+++|
T Consensus 158 ~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~--Ln~~Gt-~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaF 234 (346)
T KOG2111|consen 158 TGQVQIVDLASTKPNAPSIINAHDSDIACVA--LNLQGT-LVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAF 234 (346)
T ss_pred cceEEEEEhhhcCcCCceEEEcccCceeEEE--EcCCcc-EEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEe
Confidence 69999999887655 578899999999996 555555 5999999986 79999999999988763 4567999999
Q ss_pred ecCCCcEEEEEeCCCeEEEEeCCCCC
Q 004214 336 SKKLQNFLVSGSSDHTIKVWSFDGLS 361 (768)
Q Consensus 336 ~~~~~~~l~s~~~dg~i~iwd~~~~~ 361 (768)
+|+.. +|+++|..|++.++.+....
T Consensus 235 Sp~~s-~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 235 SPNSS-WLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred CCCcc-EEEEEcCCCeEEEEEeecCC
Confidence 99966 89999999999999988643
No 233
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=1.5e-12 Score=137.50 Aligned_cols=236 Identities=11% Similarity=0.072 Sum_probs=159.5
Q ss_pred CcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEe--CCCeEEEEeCCCceEEEeeecccCcEEEEEEecCC
Q 004214 262 EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGS--KDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKL 339 (768)
Q Consensus 262 ~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 339 (768)
..|.++|....... .+..+...+.+.. ++|++..++++.. .+..|.+|++.+++..... ...+.+....|+|+|
T Consensus 179 ~~l~~~d~dg~~~~-~lt~~~~~~~~p~--wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~-~~~~~~~~~~~SPDG 254 (429)
T PRK03629 179 YELRVSDYDGYNQF-VVHRSPQPLMSPA--WSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA-SFPRHNGAPAFSPDG 254 (429)
T ss_pred eeEEEEcCCCCCCE-EeecCCCceeeeE--EcCCCCEEEEEEecCCCcEEEEEECCCCCeEEcc-CCCCCcCCeEECCCC
Confidence 47888888765543 3444556777776 8888887444432 2457999999887643322 223334568999999
Q ss_pred CcEEEEEeCCC--eEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCC-Cc--EEEEeCCCCce
Q 004214 340 QNFLVSGSSDH--TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQD-RT--ACVWRLPDLVS 414 (768)
Q Consensus 340 ~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g~--i~i~d~~~~~~ 414 (768)
+.++++.+.+| .|.+||+..+. . .....+...+....|+|+|+.|+..+.+ +. |+++|+.++..
T Consensus 255 ~~La~~~~~~g~~~I~~~d~~tg~----------~-~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~ 323 (429)
T PRK03629 255 SKLAFALSKTGSLNLYVMDLASGQ----------I-RQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP 323 (429)
T ss_pred CEEEEEEcCCCCcEEEEEECCCCC----------E-EEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe
Confidence 86666656555 48888886432 1 1122233456789999999988877654 44 55557766644
Q ss_pred EEEEeccCCCeEEEEEccCCCEEEEeeCC---CcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCc---E
Q 004214 415 VVTFRGHKRGIWSVEFSPVDQVVITASGD---KTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGL---V 488 (768)
Q Consensus 415 ~~~~~~~~~~v~~v~~s~~~~~l~t~~~d---~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~---i 488 (768)
..+..+........|+|+|+.|+..+.+ ..|.+||+.++... .+... .......|+|||++|+.++.++. +
T Consensus 324 -~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l 400 (429)
T PRK03629 324 -QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVL 400 (429)
T ss_pred -EEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCCceECCCCCEEEEEEcCCCceEE
Confidence 3344344556778999999998876543 35889999887643 33321 22346789999999999888764 6
Q ss_pred EEEECCCCeEEEEeccCCCcEEEEEEcC
Q 004214 489 KLWTVRTGECIATYDKHEDKIWALAVGK 516 (768)
Q Consensus 489 ~iwd~~~~~~~~~~~~~~~~v~~l~~s~ 516 (768)
.++++ +|.....+.+|.+.+...+|+|
T Consensus 401 ~~~~~-~G~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 401 NLVST-DGRFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred EEEEC-CCCCeEECccCCCCcCCcccCC
Confidence 77777 5666677777888898899987
No 234
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.58 E-value=4.3e-13 Score=127.09 Aligned_cols=226 Identities=15% Similarity=0.162 Sum_probs=167.8
Q ss_pred eecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCce----eeeeeeCCccceEEEeeeeecCCCEEEEEEeCC--C
Q 004214 234 RLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMS----CSYVLAGHSEIVLCLDTCALSSGKILIVTGSKD--N 307 (768)
Q Consensus 234 ~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~----~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~d--g 307 (768)
.......+|..++.. +..|++|..+|.+.+|....+. ....+..+ ..+..+. -.+....++++|+.. .
T Consensus 100 ~~~l~~~~I~gl~~~---dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r--~~~~~p~Iva~GGke~~n 173 (412)
T KOG3881|consen 100 TVSLGTKSIKGLKLA---DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVR--QTDTDPYIVATGGKENIN 173 (412)
T ss_pred ccccccccccchhhc---CCEEEEEecCCcEEEEeccCCccccccceeeecC-Cceeeec--cCCCCCceEecCchhccc
Confidence 344455566666653 3578888999999999988443 22233333 3344444 445556668889999 8
Q ss_pred eEEEEeCCCceEEEeeeccc---------CcEEEEEEecCC-CcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEee
Q 004214 308 SVRLWDSESRCCVGVGTGHM---------GAVGAVAFSKKL-QNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVA 377 (768)
Q Consensus 308 ~i~iwd~~~~~~~~~~~~~~---------~~v~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 377 (768)
.+.+||++..+.+..-+.-. -.++++.|.+.. ...|++++.-+.+++||.+.. ..+...+.
T Consensus 174 ~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~q---------RRPV~~fd 244 (412)
T KOG3881|consen 174 ELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQ---------RRPVAQFD 244 (412)
T ss_pred ceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCccc---------CcceeEec
Confidence 99999999886665443211 235677787651 346999999999999999843 33555556
Q ss_pred ccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEE-EeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCce
Q 004214 378 AHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVT-FRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSC 456 (768)
Q Consensus 378 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~ 456 (768)
....+++++...|.++++++|..-|.+..||++.++.... +.+..+.|+++..+|.++++++++-|+.|||+|+.+.++
T Consensus 245 ~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkl 324 (412)
T KOG3881|consen 245 FLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKL 324 (412)
T ss_pred cccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchh
Confidence 6678999999999999999999999999999999998887 889999999999999999999999999999999998776
Q ss_pred eEEeecCCCcEEEEEEEeC
Q 004214 457 LKTFEGHTSSVLRASFLTR 475 (768)
Q Consensus 457 ~~~~~~~~~~v~~~~~s~~ 475 (768)
+.... -...++++.+.++
T Consensus 325 l~kvY-vKs~lt~il~~~~ 342 (412)
T KOG3881|consen 325 LHKVY-VKSRLTFILLRDD 342 (412)
T ss_pred hhhhh-hhccccEEEecCC
Confidence 65543 2334455555443
No 235
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=2.9e-14 Score=140.16 Aligned_cols=230 Identities=16% Similarity=0.232 Sum_probs=168.1
Q ss_pred eEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeee-eCCccceEEEeeeeecCCCEEEEEEeCCC
Q 004214 229 LILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVL-AGHSEIVLCLDTCALSSGKILIVTGSKDN 307 (768)
Q Consensus 229 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~-~~~~~~v~~l~~~~~~~~~~~l~~~~~dg 307 (768)
+.....+.||.+.|.++.|+. ++.+|++|+.|-.+.|||.-..+.+..+ .+|...|.|+.+.....+. ++++|..|.
T Consensus 40 L~lE~eL~GH~GCVN~LeWn~-dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnr-iv~sgAgDk 117 (758)
T KOG1310|consen 40 LDLEAELTGHTGCVNCLEWNA-DGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNR-IVLSGAGDK 117 (758)
T ss_pred cchhhhhccccceecceeecC-CCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCe-EEEeccCcc
Confidence 344567889999999999984 8899999999999999999877777665 7899999999955444444 599999999
Q ss_pred eEEEEeCCC----------ceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEee
Q 004214 308 SVRLWDSES----------RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVA 377 (768)
Q Consensus 308 ~i~iwd~~~----------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 377 (768)
.|+++|+.. ......+..|...|..++..|++++.+.+++.||+++-+|++...................
T Consensus 118 ~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~ 197 (758)
T KOG1310|consen 118 LIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYN 197 (758)
T ss_pred eEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhc
Confidence 999999984 2345556789999999999999999999999999999999986422111000000000111
Q ss_pred ccCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCC--------Cc----------eEEEE-eccC-----------CCeE
Q 004214 378 AHGKDINSLAVAP-NDSLVCTGSQDRTACVWRLPD--------LV----------SVVTF-RGHK-----------RGIW 426 (768)
Q Consensus 378 ~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~--------~~----------~~~~~-~~~~-----------~~v~ 426 (768)
..--...+++++| +..+|++|+.|-..++||.+. +. ++.-+ .+|- ..++
T Consensus 198 ~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t 277 (758)
T KOG1310|consen 198 PQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCT 277 (758)
T ss_pred hhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeE
Confidence 1123467899999 567899999999999999421 11 11111 1221 1256
Q ss_pred EEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEe
Q 004214 427 SVEFSPVDQVVITASGDKTIKIWSISDGSCLKTF 460 (768)
Q Consensus 427 ~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~ 460 (768)
-+.|+|+|.-|++.-..-.|+++|+..++....+
T Consensus 278 ~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 278 YVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred EEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence 6889999977766666678999999887765544
No 236
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.57 E-value=3.1e-13 Score=124.98 Aligned_cols=150 Identities=19% Similarity=0.299 Sum_probs=113.6
Q ss_pred EEEEEccCCCEEEEEeC---C-------CcEEEEeCCC-CceEEEEec-cCCCeEEEEEccCCCEEEEe--eCCCcEEEE
Q 004214 384 NSLAVAPNDSLVCTGSQ---D-------RTACVWRLPD-LVSVVTFRG-HKRGIWSVEFSPVDQVVITA--SGDKTIKIW 449 (768)
Q Consensus 384 ~~~~~s~~~~~l~~~~~---d-------g~i~i~d~~~-~~~~~~~~~-~~~~v~~v~~s~~~~~l~t~--~~d~~i~iw 449 (768)
..+.|+|+|.+|++-.. | |...+|.++. ......+.- ..++|.+++|+|+|+.+++. ..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 46788999987776544 1 2345555522 233444433 34579999999999987654 456799999
Q ss_pred eCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeC---CCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeC
Q 004214 450 SISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGA---DGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGS 526 (768)
Q Consensus 450 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~ 526 (768)
|++ ++.+..+. ...+..+.|+|+|++|++++. .|.|.+||+++.+.+.+.. |. .++.++|+|+|++|+++..
T Consensus 89 d~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~~-~~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 89 DVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-HS-DATDVEWSPDGRYLATATT 163 (194)
T ss_pred cCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-cC-cEEEEEEcCCCCEEEEEEe
Confidence 996 77777774 567788999999999999875 3679999999999998876 44 4789999999999999874
Q ss_pred ------CCcEEEEEcCCH
Q 004214 527 ------DALVNLWHDSTA 538 (768)
Q Consensus 527 ------dg~v~vw~~~~~ 538 (768)
|..++||+....
T Consensus 164 ~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 164 SPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred ccceeccccEEEEEecCe
Confidence 788999998643
No 237
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=6e-12 Score=118.05 Aligned_cols=305 Identities=14% Similarity=0.154 Sum_probs=187.9
Q ss_pred CCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCc-cceeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCe
Q 004214 30 KGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKH-FSRVTSMAITSDGS-TLISAGRDKVVNLWDLRDYS 107 (768)
Q Consensus 30 ~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h-~~~V~~l~fs~d~~-~L~s~~~dg~i~vWd~~~~~ 107 (768)
.-.+..++|++.- ..+|++..|-.|++||-.. ++...++.. ...|++++|-|.+. .|+.++.. -|++|.....-
T Consensus 98 ~~dlr~~aWhqH~--~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tl 173 (445)
T KOG2139|consen 98 EIDLRGVAWHQHI--IAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTL 173 (445)
T ss_pred hcceeeEeechhh--hhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCccc
Confidence 3456778999954 4489999999999999766 666666643 34799999999654 55566654 49999764311
Q ss_pred eeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeeccccc
Q 004214 108 CKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMD 187 (768)
Q Consensus 108 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~ 187 (768)
.... -+.
T Consensus 174 n~~r-----------------------------------------~~~-------------------------------- 180 (445)
T KOG2139|consen 174 NANR-----------------------------------------NIR-------------------------------- 180 (445)
T ss_pred cccc-----------------------------------------ccc--------------------------------
Confidence 0000 000
Q ss_pred CcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEE
Q 004214 188 DSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVY 267 (768)
Q Consensus 188 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~ 267 (768)
....+...+ .+-.|| .+|+++.|.++...++-++-.+..|.||
T Consensus 181 --------------------~~s~~~~qv----------------l~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iW 223 (445)
T KOG2139|consen 181 --------------------MMSTHHLQV----------------LQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIW 223 (445)
T ss_pred --------------------cccccchhh----------------eeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEE
Confidence 000000000 011122 5788999986544444444567899999
Q ss_pred ECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEe
Q 004214 268 DLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGS 347 (768)
Q Consensus 268 d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~ 347 (768)
|..++..+......-+.+.-+. ++|++.. |++++-|+..++|+....-.........+.|...+|+|.|+.+|++.+
T Consensus 224 dpdtg~~~pL~~~glgg~slLk--wSPdgd~-lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s 300 (445)
T KOG2139|consen 224 DPDTGQKIPLIPKGLGGFSLLK--WSPDGDV-LFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS 300 (445)
T ss_pred cCCCCCcccccccCCCceeeEE--EcCCCCE-EEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc
Confidence 9999988766655566676776 7787776 888899999999965433222222334459999999999998888887
Q ss_pred CCCeEEEEeCCCCCCCCccccccceee---------Ee---eccCCCeEEEEEccCCCEEEEEeCCCc--------EEEE
Q 004214 348 SDHTIKVWSFDGLSDDAEQPMNLKAKA---------VV---AAHGKDINSLAVAPNDSLVCTGSQDRT--------ACVW 407 (768)
Q Consensus 348 ~dg~i~iwd~~~~~~~~~~~~~~~~~~---------~~---~~~~~~i~~~~~s~~~~~l~~~~~dg~--------i~i~ 407 (768)
....+.-............+...+... .. .--.+.+.+++|+|.|.++|+.-..+. |.+|
T Consensus 301 gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~f 380 (445)
T KOG2139|consen 301 GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRF 380 (445)
T ss_pred CCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhh
Confidence 766554444332221111111111111 00 112467889999999999999766543 6677
Q ss_pred eCCCCceEEEEe-c--cCCCeEEEEEcc---CCCEEEEeeCCCcEEEEeC
Q 004214 408 RLPDLVSVVTFR-G--HKRGIWSVEFSP---VDQVVITASGDKTIKIWSI 451 (768)
Q Consensus 408 d~~~~~~~~~~~-~--~~~~v~~v~~s~---~~~~l~t~~~d~~i~iwd~ 451 (768)
|.+..-.+.-.. + ...+...++|+| ++.+|..+-..|.+.-|++
T Consensus 381 dtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl 430 (445)
T KOG2139|consen 381 DTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPL 430 (445)
T ss_pred cccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeee
Confidence 765543332221 1 112244566665 4667777777788877776
No 238
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=6.8e-12 Score=124.13 Aligned_cols=232 Identities=10% Similarity=0.112 Sum_probs=140.2
Q ss_pred eecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCC-----CeEEEEeCCCCCCCCcc
Q 004214 292 ALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSD-----HTIKVWSFDGLSDDAEQ 366 (768)
Q Consensus 292 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~ 366 (768)
++.+++. +|--.. ..|.||+..+..++..-.-.-..|....|+|.+. +|+--+.. ..+.+-.+...
T Consensus 313 WS~DdKy-~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~-llAYwtpe~~~~parvtL~evPs~------ 383 (698)
T KOG2314|consen 313 WSHDDKY-FARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSN-LLAYWTPETNNIPARVTLMEVPSK------ 383 (698)
T ss_pred eccCCce-eEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcc-eEEEEcccccCCcceEEEEecCcc------
Confidence 4444443 554443 5788998877655554444556788889999844 44322111 12333333321
Q ss_pred ccccceeeEeeccCCCeEEEEEccCCCEEEEEeC----------CCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCE
Q 004214 367 PMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ----------DRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQV 436 (768)
Q Consensus 367 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~ 436 (768)
.......-+.-.=..+-|-.+|.+|+.--. -..+.|+.++........-.-...|...+|-|.|..
T Consensus 384 ----~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdk 459 (698)
T KOG2314|consen 384 ----REIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDK 459 (698)
T ss_pred ----ceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCe
Confidence 122222222222234667778888876321 123556665544333222235678899999999988
Q ss_pred EEEeeC---CCcEEEEeCCC----CceeEEeecCCCcEEEEEEEeCCCEEEEEe---CCCcEEEEECCCCeEEEEeccCC
Q 004214 437 VITASG---DKTIKIWSISD----GSCLKTFEGHTSSVLRASFLTRGAQIVSCG---ADGLVKLWTVRTGECIATYDKHE 506 (768)
Q Consensus 437 l~t~~~---d~~i~iwd~~~----~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~ 506 (768)
+++-+. ..++.+|.+.+ .+++..+.. ...+.+.|+|.|++++.+. ..|.+.++|..-..+..+-....
T Consensus 460 F~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh 537 (698)
T KOG2314|consen 460 FAVISGNTVKNTVSFYAVETNIKKPSLVKELDK--KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEH 537 (698)
T ss_pred EEEEEccccccceeEEEeecCCCchhhhhhhcc--cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccc
Confidence 877554 35788898763 234455542 5667899999999987764 46889999987544433332233
Q ss_pred CcEEEEEEcCCCCEEEEEeCC------CcEEEEEcCCH
Q 004214 507 DKIWALAVGKKTEMFATGGSD------ALVNLWHDSTA 538 (768)
Q Consensus 507 ~~v~~l~~s~~~~~l~s~~~d------g~v~vw~~~~~ 538 (768)
...+.+.|.|.|+|++|+++- .--++|++...
T Consensus 538 ~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqGr 575 (698)
T KOG2314|consen 538 FAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQGR 575 (698)
T ss_pred cccccceECCCCCEEEEeeehhhhccccceEEEEeecH
Confidence 456778999999999999863 33577877653
No 239
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.55 E-value=8e-08 Score=109.45 Aligned_cols=399 Identities=15% Similarity=0.120 Sum_probs=228.7
Q ss_pred CCCcEEEEEEeeCCCccEEEEEeCCCcEEEE----ECCCC--eeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 004214 29 HKGVVSSILFHPDTDKSLLFSGSDDATVRVW----DLLAK--KCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWD 102 (768)
Q Consensus 29 h~~~V~~l~~spd~~~~~l~sg~~dg~I~iW----d~~~~--~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd 102 (768)
..+.|.++.|-++... ++.+..+|.|.+. |..+. +.+..+ .++|.+++||||+..|+.+..++++.+-+
T Consensus 74 ~~~~ivs~~yl~d~~~--l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~v---d~GI~a~~WSPD~Ella~vT~~~~l~~mt 148 (928)
T PF04762_consen 74 PNDKIVSFQYLADSES--LCIALASGDIILVREDPDPDEDEIEIVGSV---DSGILAASWSPDEELLALVTGEGNLLLMT 148 (928)
T ss_pred CCCcEEEEEeccCCCc--EEEEECCceEEEEEccCCCCCceeEEEEEE---cCcEEEEEECCCcCEEEEEeCCCEEEEEe
Confidence 3468999999998877 8888889999999 54433 334443 46799999999999999999998888764
Q ss_pred CCCCeeeeeeeccee------EeeEEecCCCCCccccccc--------------------cchhhhhcccCCcceEEEEe
Q 004214 103 LRDYSCKLTVPTYEM------VEAVCAIPPGSAFDSFLSS--------------------YNQQTIKKKRRSLEIHFITV 156 (768)
Q Consensus 103 ~~~~~~~~~~~~~~~------v~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~ 156 (768)
.+...+...+.... ...+.|-.....+-...+. .........-+.++.+|++.
T Consensus 149 -~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVs 227 (928)
T PF04762_consen 149 -RDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVS 227 (928)
T ss_pred -ccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEE
Confidence 45555544443221 1222222222211111111 11111122233455566665
Q ss_pred eC------CcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEe---cCeEEEEeeccCcccce
Q 004214 157 GE------RGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTA---DQQLLLYTTVEVPEKKM 227 (768)
Q Consensus 157 ~~------~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---dg~i~~~~~~~~~~~~~ 227 (768)
+- ...+|+|+-++. +..... ...+.-..+++.|.++.+++... ...+.+|......-..+
T Consensus 228 s~~~~~~~~R~iRVy~ReG~-L~stSE----------~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF 296 (928)
T PF04762_consen 228 SVEPETGSRRVIRVYSREGE-LQSTSE----------PVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEF 296 (928)
T ss_pred EEEcCCCceeEEEEECCCce-EEeccc----------cCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeE
Confidence 43 357888887733 221111 11123356678888887766654 35677776655443332
Q ss_pred eeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCcee--eeeeeC-CccceEEEeeeeecCCCEEEEEEe
Q 004214 228 ELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSC--SYVLAG-HSEIVLCLDTCALSSGKILIVTGS 304 (768)
Q Consensus 228 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~--~~~~~~-~~~~v~~l~~~~~~~~~~~l~~~~ 304 (768)
.++. ......|..+.|++ ++..||+...+. |++|-..+..- .+.+.. ....+..+. |.+.....|...+
T Consensus 297 ~l~~----~~~~~~v~~l~Wn~-ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~--Wdpe~p~~L~v~t 368 (928)
T PF04762_consen 297 TLRF----DPEEEKVIELAWNS-DSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVK--WDPEKPLRLHVLT 368 (928)
T ss_pred ecCC----CCCCceeeEEEECC-CCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceE--ECCCCCCEEEEEe
Confidence 2221 23456789999985 778888877644 99999877542 222221 122233344 5565555566666
Q ss_pred CCCeEEEEeCC----Cc--------eEEEeee-----------------------cccCcEEEEEEecCCCcEEEEEeCC
Q 004214 305 KDNSVRLWDSE----SR--------CCVGVGT-----------------------GHMGAVGAVAFSKKLQNFLVSGSSD 349 (768)
Q Consensus 305 ~dg~i~iwd~~----~~--------~~~~~~~-----------------------~~~~~v~~~~~~~~~~~~l~s~~~d 349 (768)
.+|.+..+++. .+ ..+.... .-..+|.+++|++++. .+++-..|
T Consensus 369 ~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~-~~avl~~d 447 (928)
T PF04762_consen 369 SNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNS-RFAVLTSD 447 (928)
T ss_pred cCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCC-eEEEEECC
Confidence 66666555421 10 0111111 1346799999999866 48889999
Q ss_pred CeEEEEeCCCCCCCCc-cc-cccce------eeEeeccCCCeEEEEEccCCCEEEEEeCC---CcEEEEeCCCCc---eE
Q 004214 350 HTIKVWSFDGLSDDAE-QP-MNLKA------KAVVAAHGKDINSLAVAPNDSLVCTGSQD---RTACVWRLPDLV---SV 415 (768)
Q Consensus 350 g~i~iwd~~~~~~~~~-~~-~~~~~------~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~i~d~~~~~---~~ 415 (768)
|.+.+|.......... .+ ..... ..........+..++|..+..+++....+ ..+.+++..... ..
T Consensus 448 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 527 (928)
T PF04762_consen 448 GSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASV 527 (928)
T ss_pred CCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCceeE
Confidence 9999998654432210 00 00000 00111234567888888887777776664 578888874332 23
Q ss_pred EEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCC
Q 004214 416 VTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISD 453 (768)
Q Consensus 416 ~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~ 453 (768)
.....-...+..+...++...++.-..+|.+...+...
T Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~ 565 (928)
T PF04762_consen 528 ESSTEVDGVVLIISSSPDSGSLYIQTNDGKVFQLSSDG 565 (928)
T ss_pred EEEeccCceEEEEeeCCCCcEEEEEECCCEEEEeecCC
Confidence 33333445566666666655466666788888766544
No 240
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=1.4e-12 Score=138.10 Aligned_cols=238 Identities=13% Similarity=0.097 Sum_probs=155.8
Q ss_pred CcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEe-CC--CeEEEEeCCCceEEEeeecccCcEEEEEEecC
Q 004214 262 EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGS-KD--NSVRLWDSESRCCVGVGTGHMGAVGAVAFSKK 338 (768)
Q Consensus 262 ~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~-~d--g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~ 338 (768)
..|.++|... .....+..+...+.+.. ++|+++. |+..+ .+ ..|.+||+.+++.... ....+.+.+..|+|+
T Consensus 176 ~~L~~~D~dG-~~~~~l~~~~~~v~~p~--wSPDG~~-la~~s~~~~~~~I~~~dl~~g~~~~l-~~~~g~~~~~~~SPD 250 (427)
T PRK02889 176 YQLQISDADG-QNAQSALSSPEPIISPA--WSPDGTK-LAYVSFESKKPVVYVHDLATGRRRVV-ANFKGSNSAPAWSPD 250 (427)
T ss_pred cEEEEECCCC-CCceEeccCCCCcccce--EcCCCCE-EEEEEccCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCC
Confidence 4677777643 33344556667777776 7788877 54444 22 4699999998876443 333455678999999
Q ss_pred CCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeC-CCcEEEEeC--CCCceE
Q 004214 339 LQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ-DRTACVWRL--PDLVSV 415 (768)
Q Consensus 339 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~i~d~--~~~~~~ 415 (768)
|+.++++.+.+|...+|.++.... ....+..+........|+|||+.|+..+. +|...+|.+ .++...
T Consensus 251 G~~la~~~~~~g~~~Iy~~d~~~~---------~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~ 321 (427)
T PRK02889 251 GRTLAVALSRDGNSQIYTVNADGS---------GLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ 321 (427)
T ss_pred CCEEEEEEccCCCceEEEEECCCC---------CcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE
Confidence 987667788888877776542211 11122223344567889999998886654 455566654 444332
Q ss_pred EEEeccCCCeEEEEEccCCCEEEEeeCCC---cEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCC---cEE
Q 004214 416 VTFRGHKRGIWSVEFSPVDQVVITASGDK---TIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADG---LVK 489 (768)
Q Consensus 416 ~~~~~~~~~v~~v~~s~~~~~l~t~~~d~---~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg---~i~ 489 (768)
.+..+.......+|+|+|++|+..+.++ .|.+||+.+++... +.. ........|+|||++|+.++.++ .+.
T Consensus 322 -~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~-~~~~~~p~~spdg~~l~~~~~~~g~~~l~ 398 (427)
T PRK02889 322 -RVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTD-TTRDESPSFAPNGRYILYATQQGGRSVLA 398 (427)
T ss_pred -EEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccC-CCCccCceECCCCCEEEEEEecCCCEEEE
Confidence 2222233345678999999998776554 69999998876543 332 23346789999999988777644 355
Q ss_pred EEECCCCeEEEEeccCCCcEEEEEEcCC
Q 004214 490 LWTVRTGECIATYDKHEDKIWALAVGKK 517 (768)
Q Consensus 490 iwd~~~~~~~~~~~~~~~~v~~l~~s~~ 517 (768)
+.++ +|.....+..+.+.+...+|+|-
T Consensus 399 ~~~~-~g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 399 AVSS-DGRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred EEEC-CCCceEEeecCCCCCCCCccCCC
Confidence 5566 56666666667777788888874
No 241
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=1.8e-12 Score=137.74 Aligned_cols=235 Identities=16% Similarity=0.097 Sum_probs=157.6
Q ss_pred CcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeC---CCeEEEEeCCCceEEEeeecccCcEEEEEEecC
Q 004214 262 EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSK---DNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKK 338 (768)
Q Consensus 262 ~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~ 338 (768)
..|.+||..... ...+..+...+.+.. ++++++. |+..+. ...|++||+.+++.... ....+...+..|+|+
T Consensus 184 ~~l~i~D~~g~~-~~~lt~~~~~v~~p~--wSpDg~~-la~~s~~~~~~~l~~~dl~~g~~~~l-~~~~g~~~~~~~SpD 258 (433)
T PRK04922 184 YALQVADSDGYN-PQTILRSAEPILSPA--WSPDGKK-LAYVSFERGRSAIYVQDLATGQRELV-ASFRGINGAPSFSPD 258 (433)
T ss_pred EEEEEECCCCCC-ceEeecCCCcccccc--CCCCCCE-EEEEecCCCCcEEEEEECCCCCEEEe-ccCCCCccCceECCC
Confidence 368889886443 345556666777776 7788877 555442 34799999988765433 334455567899999
Q ss_pred CCcEEEEEeCCC--eEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeC-CCc--EEEEeCCCCc
Q 004214 339 LQNFLVSGSSDH--TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ-DRT--ACVWRLPDLV 413 (768)
Q Consensus 339 ~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~--i~i~d~~~~~ 413 (768)
|+.++++.+.+| .|.+||+..+. ......+.......+|+|||+.|+.++. +|. |+++++.+++
T Consensus 259 G~~l~~~~s~~g~~~Iy~~d~~~g~-----------~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~ 327 (433)
T PRK04922 259 GRRLALTLSRDGNPEIYVMDLGSRQ-----------LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGS 327 (433)
T ss_pred CCEEEEEEeCCCCceEEEEECCCCC-----------eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 987667777666 58888887542 1112233344567899999998887764 444 6777776665
Q ss_pred eEEEEeccCCCeEEEEEccCCCEEEEeeCCC---cEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCC---Cc
Q 004214 414 SVVTFRGHKRGIWSVEFSPVDQVVITASGDK---TIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGAD---GL 487 (768)
Q Consensus 414 ~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~---~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d---g~ 487 (768)
... +..+.......+|+|+|+.|+..+.++ .|.+||+.+++.. .+. +........|+|||++++..+.+ +.
T Consensus 328 ~~~-lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~ 404 (433)
T PRK04922 328 AER-LTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGV 404 (433)
T ss_pred eEE-eecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceE
Confidence 432 222334455789999999998765433 6999999887654 333 33345567999999988776653 35
Q ss_pred EEEEECCCCeEEEEeccCCCcEEEEEEcC
Q 004214 488 VKLWTVRTGECIATYDKHEDKIWALAVGK 516 (768)
Q Consensus 488 i~iwd~~~~~~~~~~~~~~~~v~~l~~s~ 516 (768)
|.++++. |.....+..+.+.+...+|+|
T Consensus 405 L~~~~~~-g~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 405 LAAVSTD-GRVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred EEEEECC-CCceEEcccCCCCCCCCccCC
Confidence 7888874 445566655667777778876
No 242
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.53 E-value=1.2e-12 Score=120.99 Aligned_cols=158 Identities=13% Similarity=0.277 Sum_probs=113.7
Q ss_pred EEEEEecCCCcEEEEEeC---------CCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEE--e
Q 004214 331 GAVAFSKKLQNFLVSGSS---------DHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTG--S 399 (768)
Q Consensus 331 ~~~~~~~~~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~--~ 399 (768)
..+.|+|.|..+++.... -|...+|.++... ............+|.+++|+|+|+.+++. .
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~--------~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~ 80 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKN--------IPVESIELKKEGPIHDVAWSPNGNEFAVIYGS 80 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCC--------CccceeeccCCCceEEEEECcCCCEEEEEEcc
Confidence 356788887755555441 2345566554221 11111222234579999999999987654 3
Q ss_pred CCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeC---CCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCC
Q 004214 400 QDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASG---DKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRG 476 (768)
Q Consensus 400 ~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~---d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~ 476 (768)
.++.|.+||++ ++.+..+. ...+..+.|+|+|++|++|+. .|.|.+||.++.+.+.++. |. .++.+.|+|+|
T Consensus 81 ~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~~-~~t~~~WsPdG 155 (194)
T PF08662_consen 81 MPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-HS-DATDVEWSPDG 155 (194)
T ss_pred CCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-cC-cEEEEEEcCCC
Confidence 56799999996 66666654 567889999999999999874 3679999999999988876 33 47899999999
Q ss_pred CEEEEEeC------CCcEEEEECCCCeEEEEe
Q 004214 477 AQIVSCGA------DGLVKLWTVRTGECIATY 502 (768)
Q Consensus 477 ~~l~s~~~------dg~i~iwd~~~~~~~~~~ 502 (768)
++|+++.. |..++||+. +|+.+...
T Consensus 156 r~~~ta~t~~r~~~dng~~Iw~~-~G~~l~~~ 186 (194)
T PF08662_consen 156 RYLATATTSPRLRVDNGFKIWSF-QGRLLYKK 186 (194)
T ss_pred CEEEEEEeccceeccccEEEEEe-cCeEeEec
Confidence 99998875 678899997 56666554
No 243
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.51 E-value=1.9e-09 Score=105.13 Aligned_cols=220 Identities=13% Similarity=0.089 Sum_probs=149.1
Q ss_pred CceEEEEecCeEEEEeeccCcccceeeEEEee----ecccCCceeEEE-EecCCCCEEEEEeCCCcEEEEECCCceeeee
Q 004214 203 QGLLCVTADQQLLLYTTVEVPEKKMELILSKR----LVGYNEEILDLK-FLGEEEQYLAVATNIEQVQVYDLSSMSCSYV 277 (768)
Q Consensus 203 ~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~----~~~~~~~i~~~~-~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~ 277 (768)
..-++-...|.|++|+.....-.+....+... ....-.+.--+. |...++.+++..+. |+..+.+...+-.+.
T Consensus 278 GkrIvFq~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~~~iq- 355 (668)
T COG4946 278 GKRIVFQNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDGYSIQ- 355 (668)
T ss_pred CcEEEEecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCCeeEE-
Confidence 34456677789999988776544333221111 111111111122 45567888888877 888887766554432
Q ss_pred eeCCccceEEEeeeeecCCCEEEEEEeCCC-eEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEe
Q 004214 278 LAGHSEIVLCLDTCALSSGKILIVTGSKDN-SVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS 356 (768)
Q Consensus 278 ~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd 356 (768)
-+|...|.-.. ...+... ++.|..|| .+-++|..+++... +...-+.|.++..+++|+ +++.+.....+.+.|
T Consensus 356 -v~~~~~VrY~r--~~~~~e~-~vigt~dgD~l~iyd~~~~e~kr-~e~~lg~I~av~vs~dGK-~~vvaNdr~el~vid 429 (668)
T COG4946 356 -VGKKGGVRYRR--IQVDPEG-DVIGTNDGDKLGIYDKDGGEVKR-IEKDLGNIEAVKVSPDGK-KVVVANDRFELWVID 429 (668)
T ss_pred -cCCCCceEEEE--EccCCcc-eEEeccCCceEEEEecCCceEEE-eeCCccceEEEEEcCCCc-EEEEEcCceEEEEEE
Confidence 24455565554 4444454 88999999 99999999886544 456778999999999987 688888888888899
Q ss_pred CCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCC----cEEEEeCCCCceEEEEeccCCCeEEEEEcc
Q 004214 357 FDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDR----TACVWRLPDLVSVVTFRGHKRGIWSVEFSP 432 (768)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~ 432 (768)
++++. ....-.....-|+.++|+|+++++|-+--+| .|++||+..++...... ....=.+-+|.|
T Consensus 430 idngn----------v~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta~DfsPaFD~ 498 (668)
T COG4946 430 IDNGN----------VRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTAYDFSPAFDP 498 (668)
T ss_pred ecCCC----------eeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC-CcccccCcccCC
Confidence 98653 3334444567799999999999999988776 68999998887655433 333345667889
Q ss_pred CCCEEEEee
Q 004214 433 VDQVVITAS 441 (768)
Q Consensus 433 ~~~~l~t~~ 441 (768)
++++|.--+
T Consensus 499 d~ryLYfLs 507 (668)
T COG4946 499 DGRYLYFLS 507 (668)
T ss_pred CCcEEEEEe
Confidence 998876544
No 244
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=1.1e-11 Score=132.03 Aligned_cols=236 Identities=12% Similarity=0.010 Sum_probs=158.6
Q ss_pred CcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEe--CCCeEEEEeCCCceEEEeeecccCcEEEEEEecCC
Q 004214 262 EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGS--KDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKL 339 (768)
Q Consensus 262 ~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 339 (768)
..|.++|..... ...+..|...+.+.. ++++++.++++.. .+..|.+||+.+++.. .+..+.+.+.+.+|+|+|
T Consensus 182 ~~l~~~d~dg~~-~~~lt~~~~~v~~p~--wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG 257 (435)
T PRK05137 182 KRLAIMDQDGAN-VRYLTDGSSLVLTPR--FSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDG 257 (435)
T ss_pred eEEEEECCCCCC-cEEEecCCCCeEeeE--ECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCC
Confidence 478888875444 445667777888887 7888887444332 2468999999888654 344566677889999999
Q ss_pred CcEEEEEeCCCe--EEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeC-CC--cEEEEeCCCCce
Q 004214 340 QNFLVSGSSDHT--IKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ-DR--TACVWRLPDLVS 414 (768)
Q Consensus 340 ~~~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg--~i~i~d~~~~~~ 414 (768)
+.++++.+.++. |.+||+..+. ...+..+........|+|||+.|+..+. +| .|+++|+.++..
T Consensus 258 ~~la~~~~~~g~~~Iy~~d~~~~~-----------~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~ 326 (435)
T PRK05137 258 RKVVMSLSQGGNTDIYTMDLRSGT-----------TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP 326 (435)
T ss_pred CEEEEEEecCCCceEEEEECCCCc-----------eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe
Confidence 877777777766 6666776431 1222334445667899999998887764 33 688888876654
Q ss_pred EEEEeccCCCeEEEEEccCCCEEEEeeCC---CcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCC------
Q 004214 415 VVTFRGHKRGIWSVEFSPVDQVVITASGD---KTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGAD------ 485 (768)
Q Consensus 415 ~~~~~~~~~~v~~v~~s~~~~~l~t~~~d---~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d------ 485 (768)
. .+..+...+....|+|+|+.|+..+.+ ..|.+||+..+. ...+. ....+....|+|||+.|+..+.+
T Consensus 327 ~-~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~ 403 (435)
T PRK05137 327 R-RISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-ERILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGA 403 (435)
T ss_pred E-EeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc-eEecc-CCCCCCCCeECCCCCEEEEEEccCCCCCc
Confidence 3 343345566778999999999876543 368889985544 33333 22346778999999988765543
Q ss_pred CcEEEEECCCCeEEEEeccCCCcEEEEEEcCC
Q 004214 486 GLVKLWTVRTGECIATYDKHEDKIWALAVGKK 517 (768)
Q Consensus 486 g~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~ 517 (768)
..+.++|+..+.. ..+. ..+.+...+|+|-
T Consensus 404 ~~L~~~dl~g~~~-~~l~-~~~~~~~p~Wsp~ 433 (435)
T PRK05137 404 PKLYTVDLTGRNE-REVP-TPGDASDPAWSPL 433 (435)
T ss_pred ceEEEEECCCCce-EEcc-CCCCccCcccCCC
Confidence 2577888766544 4444 3445666777763
No 245
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=1.2e-11 Score=131.67 Aligned_cols=216 Identities=9% Similarity=-0.015 Sum_probs=147.9
Q ss_pred CeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEe--CCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeE
Q 004214 307 NSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGS--SDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDIN 384 (768)
Q Consensus 307 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 384 (768)
..|.++|..... ...+..|...+.+.+|+|+|+.++++.. .+..|.+||+..+. ...+..+...+.
T Consensus 182 ~~l~~~d~dg~~-~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~-----------~~~l~~~~g~~~ 249 (435)
T PRK05137 182 KRLAIMDQDGAN-VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQ-----------RELVGNFPGMTF 249 (435)
T ss_pred eEEEEECCCCCC-cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCc-----------EEEeecCCCccc
Confidence 378888886543 3445677889999999999885444332 34689999987542 112233455677
Q ss_pred EEEEccCCCEEE-EEeCCCc--EEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeC-C--CcEEEEeCCCCceeE
Q 004214 385 SLAVAPNDSLVC-TGSQDRT--ACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASG-D--KTIKIWSISDGSCLK 458 (768)
Q Consensus 385 ~~~~s~~~~~l~-~~~~dg~--i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~-d--~~i~iwd~~~~~~~~ 458 (768)
+.+|+|||+.|+ +.+.++. |++||+.++.. ..+..+........|+|||+.|+..+. + ..|++||+..+.. .
T Consensus 250 ~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~-~ 327 (435)
T PRK05137 250 APRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP-R 327 (435)
T ss_pred CcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-E
Confidence 889999998776 4455554 77778887755 345556666778999999998887663 3 3688889876654 3
Q ss_pred EeecCCCcEEEEEEEeCCCEEEEEeCC---CcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCC------Cc
Q 004214 459 TFEGHTSSVLRASFLTRGAQIVSCGAD---GLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSD------AL 529 (768)
Q Consensus 459 ~~~~~~~~v~~~~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~d------g~ 529 (768)
.+..+...+....|+|+|++|+..+.+ ..|.+||+.++.. ..+. ....+....|+|||+.|+..+.+ ..
T Consensus 328 ~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~ 405 (435)
T PRK05137 328 RISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPK 405 (435)
T ss_pred EeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcce
Confidence 443345566778999999999876653 2688888765543 3332 23346778999999998765543 24
Q ss_pred EEEEEcCCH
Q 004214 530 VNLWHDSTA 538 (768)
Q Consensus 530 v~vw~~~~~ 538 (768)
|.++++...
T Consensus 406 L~~~dl~g~ 414 (435)
T PRK05137 406 LYTVDLTGR 414 (435)
T ss_pred EEEEECCCC
Confidence 677776543
No 246
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=2.6e-11 Score=128.22 Aligned_cols=214 Identities=13% Similarity=0.047 Sum_probs=144.3
Q ss_pred eEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEe--CCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEE
Q 004214 308 SVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGS--SDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINS 385 (768)
Q Consensus 308 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 385 (768)
.|.+||........ +..+...+.+.+|+|+|+.++++.. .+..+.+|++..+.. .........+..
T Consensus 180 ~l~~~d~dg~~~~~-lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~-----------~~l~~~~~~~~~ 247 (429)
T PRK03629 180 ELRVSDYDGYNQFV-VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-----------RQVASFPRHNGA 247 (429)
T ss_pred eEEEEcCCCCCCEE-eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCe-----------EEccCCCCCcCC
Confidence 68899987654433 3446678999999999885444432 345788999875421 111112233456
Q ss_pred EEEccCCCEEEEE-eCCC--cEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCC-C--cEEEEeCCCCceeEE
Q 004214 386 LAVAPNDSLVCTG-SQDR--TACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGD-K--TIKIWSISDGSCLKT 459 (768)
Q Consensus 386 ~~~s~~~~~l~~~-~~dg--~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d-~--~i~iwd~~~~~~~~~ 459 (768)
.+|+|||+.|+.. +.+| .|++||+.+++... +..+...+....|+|+|+.|+..+.+ + .|.++|+.++.. ..
T Consensus 248 ~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~ 325 (429)
T PRK03629 248 PAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QR 325 (429)
T ss_pred eEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EE
Confidence 8999999988865 4455 58899998876544 34345567889999999988776654 4 455557766654 34
Q ss_pred eecCCCcEEEEEEEeCCCEEEEEeCC---CcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCc---EEEE
Q 004214 460 FEGHTSSVLRASFLTRGAQIVSCGAD---GLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDAL---VNLW 533 (768)
Q Consensus 460 ~~~~~~~v~~~~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~---v~vw 533 (768)
+..+........|+|||++|+..+.+ ..|.+||+.+++... +.. ........|+|||++|+.++.++. +.++
T Consensus 326 lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~ 403 (429)
T PRK03629 326 ITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LTD-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLV 403 (429)
T ss_pred eecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-eCC-CCCCCCceECCCCCEEEEEEcCCCceEEEEE
Confidence 44344455678999999999876553 358889998886443 322 122346789999999999888765 6667
Q ss_pred EcCC
Q 004214 534 HDST 537 (768)
Q Consensus 534 ~~~~ 537 (768)
++..
T Consensus 404 ~~~G 407 (429)
T PRK03629 404 STDG 407 (429)
T ss_pred ECCC
Confidence 6643
No 247
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.49 E-value=1e-10 Score=125.03 Aligned_cols=395 Identities=17% Similarity=0.197 Sum_probs=223.7
Q ss_pred EEEeecCCCcEEEEECCCCEEEEEEEcCCCc--EEEE--EEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCcccee
Q 004214 2 FALLEGADRKVLVWDVDGGFCTHYFKGHKGV--VSSI--LFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRV 77 (768)
Q Consensus 2 ~latg~~dg~i~vwd~~~~~~~~~l~gh~~~--V~~l--~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V 77 (768)
.++.+..+..+.+||...+.....+...... .+++ -+++ ...++++|+.-+.|.+|++..-+.-..+.+|.+.|
T Consensus 101 ~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~--~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~i 178 (967)
T KOG0974|consen 101 KIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSA--EELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSI 178 (967)
T ss_pred eEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccC--cEEEEEeccccccEEEEeccccCCcceecccCCce
Confidence 5788889999999999888866665532221 1222 2344 44569999999999999997333333689999999
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCeeee--eeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEE
Q 004214 78 TSMAITSDGSTLISAGRDKVVNLWDLRDYSCKL--TVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFIT 155 (768)
Q Consensus 78 ~~l~fs~d~~~L~s~~~dg~i~vWd~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (768)
.++.|+.||.+++|++.|.++++|++++.+... -+.+...+..+++.|. .+++
T Consensus 179 F~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n-------------------------~i~t 233 (967)
T KOG0974|consen 179 FSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN-------------------------RIIT 233 (967)
T ss_pred EEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc-------------------------eeEE
Confidence 999999999999999999999999999988665 3455566788888775 6899
Q ss_pred eeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeee
Q 004214 156 VGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRL 235 (768)
Q Consensus 156 ~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~ 235 (768)
+++|-+.++|+.+...+.. -.....+.+..+...+.....++++.|+.+++|+............ ...
T Consensus 234 ~gedctcrvW~~~~~~l~~----------y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~~e~~~~~--~~~ 301 (967)
T KOG0974|consen 234 VGEDCTCRVWGVNGTQLEV----------YDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRGLEGHVEQ--SSL 301 (967)
T ss_pred eccceEEEEEecccceehh----------hhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhccccccceee--eee
Confidence 9999999999776654321 1112235677788888888889999999999998765432110000 000
Q ss_pred cccCCceeEEEEe--------cCCCCEEEEEeC--CCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeC
Q 004214 236 VGYNEEILDLKFL--------GEEEQYLAVATN--IEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSK 305 (768)
Q Consensus 236 ~~~~~~i~~~~~~--------~~~~~~l~~~~~--~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~ 305 (768)
........+..|. ...+..++..+. .+.+...+..++ ...+. ......+++.++.
T Consensus 302 ~~s~~kl~~~~f~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~---------~~i~~------~~~~~~~v~~~~~ 366 (967)
T KOG0974|consen 302 LSSIVKLKDDQFVKCDTLLNFANHGGKLSILGNKGEKELITFESDSM---------LRIIF------SCTNDDWVAHMSN 366 (967)
T ss_pred ecchhhhcceeeeehHHHHHHHhcCCeEeecccccccceeeeeeccC---------cccee------hccccceeeeccC
Confidence 0000000000110 001111222221 111111111110 01111 1112223555555
Q ss_pred CCeEEEEeCCCceEEEeeeccc----CcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccce-eeEeeccC
Q 004214 306 DNSVRLWDSESRCCVGVGTGHM----GAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKA-KAVVAAHG 380 (768)
Q Consensus 306 dg~i~iwd~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~ 380 (768)
.+.+.+.-............|. .+...++.-. +..+-..+|..++|.....-........... ........
T Consensus 367 k~~~~v~~~~~~~~~~~~~~h~~~s~~~~~~~~~~~----~~~~~~~~g~~~~r~~~~~~~~~ad~~~i~~~~~f~~~~~ 442 (967)
T KOG0974|consen 367 KGDIYVAWHQNTIVITTSSLHRKLSANPISQVCEAS----YVASKLIDGSIQVRNLSGSLESFADVLNIRSLKEFRLPFA 442 (967)
T ss_pred CCcEEEEEeecccCccchhHHHHHhhCcccceeeee----eehhhccCCcchhhhhhcccccccceeEEeeeeeeccccC
Confidence 5555554433221111111111 1111111110 1222234556666654322111111111111 11123345
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEec---c----CCCeEEEEEccCCCEEEEeeCCCcEEEEeCCC
Q 004214 381 KDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG---H----KRGIWSVEFSPVDQVVITASGDKTIKIWSISD 453 (768)
Q Consensus 381 ~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~----~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~ 453 (768)
..+.++.-.+.+..++.|+.-|.+.+|++..+....+..+ | .+.+....--++.-++.+.+.||.+.++.+..
T Consensus 443 ~~~~~l~~~~~~~~~l~Gs~~g~lv~~~l~~~~~~~~~~~~~~~~~~~~~si~~~~~kdn~~~~~~~g~dg~~~~~~~~r 522 (967)
T KOG0974|consen 443 FRIPCLTSVVEDNLILIGSRHGELVLYNLDEPNDDIVLSLSRSHELDTGSSITCIRSKDNSAIFMTTGRDGYWSTIELIR 522 (967)
T ss_pred CCCcceecccCcceEEEccCcCcEEEecCCCCCccceeeccCcccccccccEEEEecCCCcEEEEEecCCcEEEEEEEec
Confidence 6678888888888999999999999999876543322221 1 12344444344455677778888888887754
Q ss_pred C
Q 004214 454 G 454 (768)
Q Consensus 454 ~ 454 (768)
+
T Consensus 523 ~ 523 (967)
T KOG0974|consen 523 G 523 (967)
T ss_pred C
Confidence 4
No 248
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.48 E-value=9.2e-11 Score=115.37 Aligned_cols=372 Identities=14% Similarity=0.113 Sum_probs=220.1
Q ss_pred EEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccc
Q 004214 57 RVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSS 136 (768)
Q Consensus 57 ~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 136 (768)
.+|+..+...-..+....-++..++|||.|.+|++....| |.+|.-..+..+..+. +..+..+.|+|.+..+......
T Consensus 15 ~f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~~-~~~V~~~~fSP~~kYL~tw~~~ 92 (561)
T COG5354 15 VFWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRFR-HPDVKYLDFSPNEKYLVTWSRE 92 (561)
T ss_pred EeecCccccccccccccCcchhheeecCcchheehhhccc-eEEccccchhheeeee-cCCceecccCcccceeeeeccC
Confidence 4566555555555555666899999999999999988766 9999988877444443 4557788888888743321111
Q ss_pred cchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEE
Q 004214 137 YNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLL 216 (768)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~ 216 (768)
.-. .....+.--+.+..+.+||+.++.++....
T Consensus 93 pi~--------~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~--------------------------------------- 125 (561)
T COG5354 93 PII--------EPEIEISPFTSKNNVFVWDIASGMIVFSFN--------------------------------------- 125 (561)
T ss_pred Ccc--------ChhhccCCccccCceeEEeccCceeEeecc---------------------------------------
Confidence 000 000011111222245566655553321110
Q ss_pred EeeccCcccceeeEEEeeecccCCc--ee-EEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCC---ccceEEEee
Q 004214 217 YTTVEVPEKKMELILSKRLVGYNEE--IL-DLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGH---SEIVLCLDT 290 (768)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~--i~-~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~---~~~v~~l~~ 290 (768)
+...+ .. -+.|+- ++.++|-- -...+.++++ +.... ....+ ...+....
T Consensus 126 --------------------~~~q~~~~Wp~~k~s~-~D~y~ARv-v~~sl~i~e~-t~n~~-~~p~~~lr~~gi~dFs- 180 (561)
T COG5354 126 --------------------GISQPYLGWPVLKFSI-DDKYVARV-VGSSLYIHEI-TDNIE-EHPFKNLRPVGILDFS- 180 (561)
T ss_pred --------------------ccCCcccccceeeeee-cchhhhhh-ccCeEEEEec-CCccc-cCchhhccccceeeEE-
Confidence 00001 11 233332 33333332 2357888886 32221 11111 12333333
Q ss_pred eeecC--CCEEEEE-----EeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEe----------CCCeEE
Q 004214 291 CALSS--GKILIVT-----GSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGS----------SDHTIK 353 (768)
Q Consensus 291 ~~~~~--~~~~l~~-----~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~----------~dg~i~ 353 (768)
++|. +.. |+. ++.++.+++|.+..+..+....-....-..+.|.+.|..+++-.- ....+.
T Consensus 181 -isP~~n~~~-la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLy 258 (561)
T COG5354 181 -ISPEGNHDE-LAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLY 258 (561)
T ss_pred -ecCCCCCce-EEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEE
Confidence 3333 222 232 456789999999877766654433333456777777764333221 124567
Q ss_pred EEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEe--CCCcEEEEeCCCCceEEEEeccCCCeEEEEEc
Q 004214 354 VWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGS--QDRTACVWRLPDLVSVVTFRGHKRGIWSVEFS 431 (768)
Q Consensus 354 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s 431 (768)
++++... .........++|...+|.|.++.+++.+ .+..+.++|++.. ..+......=..+.|+
T Consensus 259 l~~~~e~-----------~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N---l~~~~Pe~~rNT~~fs 324 (561)
T COG5354 259 LLRITER-----------SIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN---LRFYFPEQKRNTIFFS 324 (561)
T ss_pred EEeeccc-----------ccceeccccccceeeeecccCCceeEEecccccceeecccccc---eEEecCCccccccccc
Confidence 7776522 1111124568899999999887776654 6778999998876 2334455566778899
Q ss_pred cCCCEEEEeeCC---CcEEEEeCCCCc-eeEEeecCCCcEEEEEEEeCCCEEEEEeC------CCcEEEEECCCCeEEEE
Q 004214 432 PVDQVVITASGD---KTIKIWSISDGS-CLKTFEGHTSSVLRASFLTRGAQIVSCGA------DGLVKLWTVRTGECIAT 501 (768)
Q Consensus 432 ~~~~~l~t~~~d---~~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~s~~~------dg~i~iwd~~~~~~~~~ 501 (768)
|.+++++.++-| |.|-+||..... ++..+.+.+... +.|+||+.++.+... |..++|||+.....-
T Consensus 325 p~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~s~--~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f-- 400 (561)
T COG5354 325 PHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNTSY--CDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF-- 400 (561)
T ss_pred CcccEEEEecCCccccceEEeccCCceEEEEEeecCCceE--eeccCCceEEEecCCCcccccCcceEEEEecCchhh--
Confidence 999999998765 679999976654 444776655443 789999999877643 778999998543321
Q ss_pred eccCCCcEEEEEEcCCCCEEEEEeCCC
Q 004214 502 YDKHEDKIWALAVGKKTEMFATGGSDA 528 (768)
Q Consensus 502 ~~~~~~~v~~l~~s~~~~~l~s~~~dg 528 (768)
..+.+.|.|.|++..+.+.+.
T Consensus 401 ------el~~~~W~p~~~~~ttsSs~~ 421 (561)
T COG5354 401 ------ELTNITWDPSGQYVTTSSSCP 421 (561)
T ss_pred ------hhhhccccCCcccceeeccCC
Confidence 456678888888877777665
No 249
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.47 E-value=9.8e-12 Score=115.83 Aligned_cols=238 Identities=17% Similarity=0.221 Sum_probs=152.4
Q ss_pred eCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCce-E--EEeeec-----ccCcEEEEEEecCCCcEEEEEeCCC
Q 004214 279 AGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC-C--VGVGTG-----HMGAVGAVAFSKKLQNFLVSGSSDH 350 (768)
Q Consensus 279 ~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~--~~~~~~-----~~~~v~~~~~~~~~~~~l~s~~~dg 350 (768)
..|.-.|.++. ..++... +++ ..|=.|.+|+++-.. . +..+++ -+..|++..|+|...++++-.+..|
T Consensus 161 NaHtyhiNSIS--~NsD~Et-~lS-ADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKG 236 (433)
T KOG1354|consen 161 NAHTYHINSIS--VNSDKET-FLS-ADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKG 236 (433)
T ss_pred ccceeEeeeee--ecCccce-Eee-ccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCC
Confidence 45777888886 6666665 444 457899999986321 1 112222 2456899999999888999999999
Q ss_pred eEEEEeCCCCCC------CCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeC-CCCceEEEEeccC-
Q 004214 351 TIKVWSFDGLSD------DAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRL-PDLVSVVTFRGHK- 422 (768)
Q Consensus 351 ~i~iwd~~~~~~------~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~-~~~~~~~~~~~~~- 422 (768)
+|++.|++.... ..+.+........+..--..|..+.|+++|+++++-+. -+|++||+ ...+++.+++-|.
T Consensus 237 tIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~ 315 (433)
T KOG1354|consen 237 TIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEY 315 (433)
T ss_pred cEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHh
Confidence 999999984321 11112222223333344567889999999999998665 58999999 5667777777663
Q ss_pred -----------CCe---EEEEEccCCCEEEEeeCCCcEEEEeCCCCcee-EEeecCCCc--EEEEEEEeCCCEEEEEeCC
Q 004214 423 -----------RGI---WSVEFSPVDQVVITASGDKTIKIWSISDGSCL-KTFEGHTSS--VLRASFLTRGAQIVSCGAD 485 (768)
Q Consensus 423 -----------~~v---~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~-~~~~~~~~~--v~~~~~s~~~~~l~s~~~d 485 (768)
..| ..++|+.++.+++||+....+++|++..|... .++...... ...+ ..-+.+.+++..
T Consensus 316 lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~---~k~~~V~~~g~r 392 (433)
T KOG1354|consen 316 LRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKV---LKLRLVSSSGKR 392 (433)
T ss_pred HHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcceeecccccccCCccccc---ccceeeecCCCc
Confidence 222 45789999999999999999999998766432 233222111 1111 112234444443
Q ss_pred CcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEE
Q 004214 486 GLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 533 (768)
Q Consensus 486 g~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw 533 (768)
....+| +..++ ....+...+|+|..+.+|.+..+. +++|
T Consensus 393 ~~~~~~-------vd~ld-f~kkilh~aWhp~en~ia~aatnn-lyif 431 (433)
T KOG1354|consen 393 KRDEIS-------VDALD-FRKKILHTAWHPKENSIAVAATNN-LYIF 431 (433)
T ss_pred cccccc-------cchhh-hhhHHHhhccCCccceeeeeecCc-eEEe
Confidence 332221 11121 344566788999999998887664 4554
No 250
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=1.3e-11 Score=131.22 Aligned_cols=214 Identities=15% Similarity=0.061 Sum_probs=144.2
Q ss_pred CeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeC---CCeEEEEeCCCCCCCCccccccceeeEeeccCCCe
Q 004214 307 NSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSS---DHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDI 383 (768)
Q Consensus 307 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i 383 (768)
..|.+||...... ..+..+...+.+.+|+|+++. ++..+. +..|.+||+..+.. ..........
T Consensus 184 ~~l~i~D~~g~~~-~~lt~~~~~v~~p~wSpDg~~-la~~s~~~~~~~l~~~dl~~g~~-----------~~l~~~~g~~ 250 (433)
T PRK04922 184 YALQVADSDGYNP-QTILRSAEPILSPAWSPDGKK-LAYVSFERGRSAIYVQDLATGQR-----------ELVASFRGIN 250 (433)
T ss_pred EEEEEECCCCCCc-eEeecCCCccccccCCCCCCE-EEEEecCCCCcEEEEEECCCCCE-----------EEeccCCCCc
Confidence 3688999865443 344556778999999999884 554443 34699999875421 1112223344
Q ss_pred EEEEEccCCCEEEE-EeCCC--cEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeC-CCc--EEEEeCCCCcee
Q 004214 384 NSLAVAPNDSLVCT-GSQDR--TACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASG-DKT--IKIWSISDGSCL 457 (768)
Q Consensus 384 ~~~~~s~~~~~l~~-~~~dg--~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~-d~~--i~iwd~~~~~~~ 457 (768)
.+.+|+|+|+.++. .+.+| .|++||+.+++.. .+..+.......+|+|||+.|+.++. +|. |+++|+.+++..
T Consensus 251 ~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~ 329 (433)
T PRK04922 251 GAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE 329 (433)
T ss_pred cCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeE
Confidence 57899999987764 45555 5999999887643 45555555678899999998887664 444 777777766543
Q ss_pred EEeecCCCcEEEEEEEeCCCEEEEEeCCC---cEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCC---CcEE
Q 004214 458 KTFEGHTSSVLRASFLTRGAQIVSCGADG---LVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSD---ALVN 531 (768)
Q Consensus 458 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~d---g~v~ 531 (768)
. +..+.......+|+|+|++|+..+.++ .|.+||+.+++.. .+. +........|+|||++++..+.+ +.|.
T Consensus 330 ~-lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~ 406 (433)
T PRK04922 330 R-LTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLA 406 (433)
T ss_pred E-eecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEE
Confidence 3 222333445689999999998765433 6999999888765 333 33344567999999988876653 3467
Q ss_pred EEEcCC
Q 004214 532 LWHDST 537 (768)
Q Consensus 532 vw~~~~ 537 (768)
+++...
T Consensus 407 ~~~~~g 412 (433)
T PRK04922 407 AVSTDG 412 (433)
T ss_pred EEECCC
Confidence 777653
No 251
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.47 E-value=3.3e-10 Score=115.60 Aligned_cols=461 Identities=13% Similarity=0.101 Sum_probs=287.8
Q ss_pred CCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCe---------------eEEEecCccceeEEEEEcCCCCEEEEEe
Q 004214 29 HKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK---------------CVATLDKHFSRVTSMAITSDGSTLISAG 93 (768)
Q Consensus 29 h~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~---------------~~~~l~~h~~~V~~l~fs~d~~~L~s~~ 93 (768)
......|++|+....+ +|.|+.||.++|-.+.+.. .-+++.||++.|.-+.|+.+.+.|-|+.
T Consensus 13 nnvkL~c~~WNke~gy--IAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSD 90 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGY--IACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSD 90 (1189)
T ss_pred CCceEEEEEEcccCCe--EEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccC
Confidence 4557789999987666 9999999999999875421 1256889999999999999999999999
Q ss_pred CCCeEEEEECCCCeeeeee---ecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCc
Q 004214 94 RDKVVNLWDLRDYSCKLTV---PTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSA 170 (768)
Q Consensus 94 ~dg~i~vWd~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~ 170 (768)
.+|.|.||-+-.+.=.... .....+.+++|..+|. .+..+-+||.|.+=.+++.
T Consensus 91 t~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~-----------------------kIcIvYeDGavIVGsvdGN 147 (1189)
T KOG2041|consen 91 TSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGT-----------------------KICIVYEDGAVIVGSVDGN 147 (1189)
T ss_pred CCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCc-----------------------EEEEEEccCCEEEEeeccc
Confidence 9999999998766532222 2344578899998887 5555666666666555555
Q ss_pred eeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEE----EeeecccCCceeEEE
Q 004214 171 CLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELIL----SKRLVGYNEEILDLK 246 (768)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~ 246 (768)
.+....... .....+.++++...++..-.+|.+.+|+....-..++.... ...+......|..+.
T Consensus 148 RIwgKeLkg-----------~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~ 216 (1189)
T KOG2041|consen 148 RIWGKELKG-----------QLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIE 216 (1189)
T ss_pred eecchhcch-----------heccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCcccccee
Confidence 443222111 22346678899999999999999999998776544433322 222333444566777
Q ss_pred Ee-------cCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCC---------CeEE
Q 004214 247 FL-------GEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKD---------NSVR 310 (768)
Q Consensus 247 ~~-------~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~d---------g~i~ 310 (768)
|. +|+.+.++++..+|.+++..-........+... -.+.... |.+.|.. |+.++.+ +.|.
T Consensus 217 w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtg-m~~vgak--Wnh~G~v-LAvcG~~~da~~~~d~n~v~ 292 (1189)
T KOG2041|consen 217 WNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTG-MKIVGAK--WNHNGAV-LAVCGNDSDADEPTDSNKVH 292 (1189)
T ss_pred eccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecc-cEeecce--ecCCCcE-EEEccCcccccCccccceEE
Confidence 63 478899999999999999876554443333322 3344444 5666665 6666543 2455
Q ss_pred EEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCC-------------CCccccccceeeEee
Q 004214 311 LWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSD-------------DAEQPMNLKAKAVVA 377 (768)
Q Consensus 311 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-------------~~~~~~~~~~~~~~~ 377 (768)
+|. .-|..+..++.....|++++|-..|- =++-..|+.|.+=+++..-. ..+.+..........
T Consensus 293 Fys-p~G~i~gtlkvpg~~It~lsWEg~gL--riA~AvdsfiyfanIRP~ykWgy~e~TvVy~y~~~e~p~y~i~Fwdtk 369 (1189)
T KOG2041|consen 293 FYS-PYGHIVGTLKVPGSCITGLSWEGTGL--RIAIAVDSFIYFANIRPEYKWGYIEETVVYVYQKEELPQYGIMFWDTK 369 (1189)
T ss_pred Eec-cchhheEEEecCCceeeeeEEcCCce--EEEEEecceEEEEeecccceEEEeeeEEEEEEccCCCcceEEEEEecc
Confidence 554 34667778888888999999976643 33344566666655542200 000000000000000
Q ss_pred ------ccCCCeEEEEEccCCCEEEEEeCCCcEEEEeC-CCCceEEEEecc-------CCCeEEE---EEccCCCEEEEe
Q 004214 378 ------AHGKDINSLAVAPNDSLVCTGSQDRTACVWRL-PDLVSVVTFRGH-------KRGIWSV---EFSPVDQVVITA 440 (768)
Q Consensus 378 ------~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~-~~~~~~~~~~~~-------~~~v~~v---~~s~~~~~l~t~ 440 (768)
..-....+++++.+.-.|++-..||.+.-++. ++...+..+.-. ....+.+ -..-++.+++.+
T Consensus 370 ~nek~vK~V~~~~~~a~~~ehCvL~~~~d~~~i~e~s~le~~~~~~~l~LCNSIGT~lD~kytdirP~Fv~vn~~~vviA 449 (1189)
T KOG2041|consen 370 TNEKTVKTVTHFENMAFYREHCVLINRQDDGVIPEYSTLENRSRVYFLQLCNSIGTSLDYKYTDIRPKFVCVNGICVVIA 449 (1189)
T ss_pred cChhhhhhhcceeehheecccEEEEeccccCCCcchhhhhcccceEEEeeecccCCcCCCCcceeeeeEEEecceEEEEe
Confidence 01122345666666666666666776665532 111111111100 0111111 112246677777
Q ss_pred eCCCcEEEEeCCCCce--------------------------------eEEeecCCCcEEEEEEEeCCCEEEEEeCCCcE
Q 004214 441 SGDKTIKIWSISDGSC--------------------------------LKTFEGHTSSVLRASFLTRGAQIVSCGADGLV 488 (768)
Q Consensus 441 ~~d~~i~iwd~~~~~~--------------------------------~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i 488 (768)
|.+ .+.+|.....+. .+++.|...+|..++.+ .++|+.+-..|.|
T Consensus 450 S~e-~~~iWhy~~pK~~s~l~~~k~rkegr~h~Ddtp~ga~d~~l~ys~kt~~G~~DpICAl~~s--dk~l~vareSG~I 526 (1189)
T KOG2041|consen 450 SEE-RYFIWHYVLPKFNSVLAGVKIRKEGRFHGDDTPEGAQDRTLEYSTKTLLGSKDPICALCIS--DKFLMVARESGGI 526 (1189)
T ss_pred ccc-cEEEEEEeccchhhhhhhhhhcccccccCCCCccchhhceeeccceeeccCCCcceeeeec--ceEEEEEeccCce
Confidence 774 577887532210 12344566777666665 5689999999999
Q ss_pred EEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 004214 489 KLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDS 536 (768)
Q Consensus 489 ~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~ 536 (768)
.-|.+.+.-....+. -+..|.+++..-+...++....-|.+.+.++.
T Consensus 527 ~rySl~nv~l~n~y~-~n~~~y~~~lNCnstRlAiId~~gv~tf~dLd 573 (1189)
T KOG2041|consen 527 YRYSLNNVVLTNSYP-VNPSIYSIKLNCNSTRLAIIDLVGVVTFQDLD 573 (1189)
T ss_pred EEEEecceeeeeccc-cCchheeEeeccCcchhhhhhhhceeeeeecc
Confidence 999998887776665 45678888887777777777777777777655
No 252
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.46 E-value=7.2e-12 Score=132.59 Aligned_cols=206 Identities=12% Similarity=0.060 Sum_probs=134.4
Q ss_pred CeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCC--CeEEEEeCCCCCCCCccccccceeeEeeccCCCeE
Q 004214 307 NSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSD--HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDIN 384 (768)
Q Consensus 307 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 384 (768)
..|.++|.... ....+..+...+.+.+|+|+|+.++++...+ ..|.+||+..+. . ..+......+.
T Consensus 176 ~~L~~~D~dG~-~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~----------~-~~l~~~~g~~~ 243 (427)
T PRK02889 176 YQLQISDADGQ-NAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGR----------R-RVVANFKGSNS 243 (427)
T ss_pred cEEEEECCCCC-CceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCC----------E-EEeecCCCCcc
Confidence 46777777443 3334456778899999999987544433232 459999987542 1 11122334556
Q ss_pred EEEEccCCCEEEE-EeCCCcEEEEe--CCCCceEEEEeccCCCeEEEEEccCCCEEEEeeC-CCcEEEEe--CCCCceeE
Q 004214 385 SLAVAPNDSLVCT-GSQDRTACVWR--LPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASG-DKTIKIWS--ISDGSCLK 458 (768)
Q Consensus 385 ~~~~s~~~~~l~~-~~~dg~i~i~d--~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~-d~~i~iwd--~~~~~~~~ 458 (768)
+.+|+|||+.|+. .+.+|...+|. +.++. ...+..+........|+|||+.|+..+. +|...||. +.++...
T Consensus 244 ~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~- 321 (427)
T PRK02889 244 APAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ- 321 (427)
T ss_pred ceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE-
Confidence 8899999998874 56777766665 44443 4445555556677899999998876554 45556665 4444432
Q ss_pred EeecCCCcEEEEEEEeCCCEEEEEeCCC---cEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCC
Q 004214 459 TFEGHTSSVLRASFLTRGAQIVSCGADG---LVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDA 528 (768)
Q Consensus 459 ~~~~~~~~v~~~~~s~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg 528 (768)
.+..+........|+|+|++|+..+.++ .|.+||+.+++...... ........|+|||++|+.++.++
T Consensus 322 ~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~--~~~~~~p~~spdg~~l~~~~~~~ 392 (427)
T PRK02889 322 RVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTD--TTRDESPSFAPNGRYILYATQQG 392 (427)
T ss_pred EEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccC--CCCccCceECCCCCEEEEEEecC
Confidence 2222223344678999999998777654 69999998887543322 23346789999999988877544
No 253
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.42 E-value=4.5e-08 Score=111.41 Aligned_cols=445 Identities=13% Similarity=0.150 Sum_probs=254.1
Q ss_pred CcEEEEEEeeCCCccEEEEEeCCC--cEEEEECCCC---eeEEEec-----CccceeEEEEEcCCCCEEEEEeCCCeEEE
Q 004214 31 GVVSSILFHPDTDKSLLFSGSDDA--TVRVWDLLAK---KCVATLD-----KHFSRVTSMAITSDGSTLISAGRDKVVNL 100 (768)
Q Consensus 31 ~~V~~l~~spd~~~~~l~sg~~dg--~I~iWd~~~~---~~~~~l~-----~h~~~V~~l~fs~d~~~L~s~~~dg~i~v 100 (768)
..+...+|.+..+..+++.+.... .|.+...... +.+..+. ...+.|.++.|-++...|+.+..+|.|.+
T Consensus 22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~ 101 (928)
T PF04762_consen 22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIIL 101 (928)
T ss_pred cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEE
Confidence 467888888877776666665544 3444443322 2444443 24568999999999999999999999999
Q ss_pred E----ECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeec
Q 004214 101 W----DLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQK 176 (768)
Q Consensus 101 W----d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~ 176 (768)
. +..+......-.....+.+++|+|++. .++.++.+|.+.+..-+-.-+....
T Consensus 102 ~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~E-----------------------lla~vT~~~~l~~mt~~fd~i~E~~ 158 (928)
T PF04762_consen 102 VREDPDPDEDEIEIVGSVDSGILAASWSPDEE-----------------------LLALVTGEGNLLLMTRDFDPISEVP 158 (928)
T ss_pred EEccCCCCCceeEEEEEEcCcEEEEEECCCcC-----------------------EEEEEeCCCEEEEEeccceEEEEee
Confidence 9 666666555556677899999999987 5566666666666543222111110
Q ss_pred CCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcc-------cceeeEEEeeecccCCceeEEEEec
Q 004214 177 SSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPE-------KKMELILSKRLVGYNEEILDLKFLG 249 (768)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~-------~~~~~~~~~~~~~~~~~i~~~~~~~ 249 (768)
.... .......+.++-...=.-|....++. +.........+. .++.-..++|-+
T Consensus 159 l~~~------------------~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRG 219 (928)
T PF04762_consen 159 LDSD------------------DFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRG 219 (928)
T ss_pred cCcc------------------ccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECC
Confidence 0000 00011112221111111111000000 000000011122 555667888875
Q ss_pred CCCCEEEEEeC------CCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeC---CCeEEEEeCCCceEE
Q 004214 250 EEEQYLAVATN------IEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSK---DNSVRLWDSESRCCV 320 (768)
Q Consensus 250 ~~~~~l~~~~~------~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~ 320 (768)
|+.++|+.+- ...++||+-+ |.....-..-.+--.+++ |.|.|.. +|+... ...|.+|.-+ |-.-
T Consensus 220 -DG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~--WrPsG~l-IA~~q~~~~~~~VvFfErN-GLrh 293 (928)
T PF04762_consen 220 -DGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALS--WRPSGNL-IASSQRLPDRHDVVFFERN-GLRH 293 (928)
T ss_pred -CCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCcc--CCCCCCE-EEEEEEcCCCcEEEEEecC-CcEe
Confidence 7888888764 2578999977 443333332222233444 6666664 766654 3456666533 3222
Q ss_pred Eee----ecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEee-ccCCCeEEEEEcc-CCCE
Q 004214 321 GVG----TGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVA-AHGKDINSLAVAP-NDSL 394 (768)
Q Consensus 321 ~~~----~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~s~-~~~~ 394 (768)
..| ......|..+.|++++. +|+....|. |.+|-..+. .+-.+.... .....+..+.|+| +...
T Consensus 294 geF~l~~~~~~~~v~~l~Wn~ds~-iLAv~~~~~-vqLWt~~NY--------HWYLKqei~~~~~~~~~~~~Wdpe~p~~ 363 (928)
T PF04762_consen 294 GEFTLRFDPEEEKVIELAWNSDSE-ILAVWLEDR-VQLWTRSNY--------HWYLKQEIRFSSSESVNFVKWDPEKPLR 363 (928)
T ss_pred eeEecCCCCCCceeeEEEECCCCC-EEEEEecCC-ceEEEeeCC--------EEEEEEEEEccCCCCCCceEECCCCCCE
Confidence 222 23456899999999966 777766555 999987753 222222222 2233455589999 4556
Q ss_pred EEEEeCCCcEEEEeCC----CC--------ceEEEEec-----------------------cCCCeEEEEEccCCCEEEE
Q 004214 395 VCTGSQDRTACVWRLP----DL--------VSVVTFRG-----------------------HKRGIWSVEFSPVDQVVIT 439 (768)
Q Consensus 395 l~~~~~dg~i~i~d~~----~~--------~~~~~~~~-----------------------~~~~v~~v~~s~~~~~l~t 439 (768)
|...+.+|.+..+++. .+ ..+..+.| ...+|.+++|++++..+++
T Consensus 364 L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~av 443 (928)
T PF04762_consen 364 LHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAV 443 (928)
T ss_pred EEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEE
Confidence 7777776777665431 10 11222221 2568999999999988999
Q ss_pred eeCCCcEEEEeCCCCce--------eEEee----------cCCCcEEEEEEEeCCCEEEEEeCC---CcEEEEECCCC--
Q 004214 440 ASGDKTIKIWSISDGSC--------LKTFE----------GHTSSVLRASFLTRGAQIVSCGAD---GLVKLWTVRTG-- 496 (768)
Q Consensus 440 ~~~d~~i~iwd~~~~~~--------~~~~~----------~~~~~v~~~~~s~~~~~l~s~~~d---g~i~iwd~~~~-- 496 (768)
-..||.|.+|....... ...+. .....+..++|..+...++....+ ..+.++++...
T Consensus 444 l~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 523 (928)
T PF04762_consen 444 LTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSEN 523 (928)
T ss_pred EECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCC
Confidence 99999999998543221 11111 123457888888887776666554 57888877433
Q ss_pred -eEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEE
Q 004214 497 -ECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 533 (768)
Q Consensus 497 -~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw 533 (768)
..+.....-.+.+..+...++...++.-..+|.+...
T Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~G~v~~~ 561 (928)
T PF04762_consen 524 SASVESSTEVDGVVLIISSSPDSGSLYIQTNDGKVFQL 561 (928)
T ss_pred ceeEEEEeccCceEEEEeeCCCCcEEEEEECCCEEEEe
Confidence 2333333344555555555555445555567766543
No 254
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.40 E-value=9e-09 Score=105.79 Aligned_cols=290 Identities=14% Similarity=0.158 Sum_probs=176.2
Q ss_pred CeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeC----CCcEEEEECCCc--ee--eeeeeCCcc
Q 004214 212 QQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATN----IEQVQVYDLSSM--SC--SYVLAGHSE 283 (768)
Q Consensus 212 g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~----~~~i~i~d~~~~--~~--~~~~~~~~~ 283 (768)
+.|..|.+..... .+..... .........+++++ ++++|.+... .+.|..|.+... .. +........
T Consensus 13 ~gI~~~~~d~~~g---~l~~~~~-~~~~~~Ps~l~~~~-~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~ 87 (345)
T PF10282_consen 13 GGIYVFRFDEETG---TLTLVQT-VAEGENPSWLAVSP-DGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGS 87 (345)
T ss_dssp TEEEEEEEETTTT---EEEEEEE-EEESSSECCEEE-T-TSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSS
T ss_pred CcEEEEEEcCCCC---CceEeee-ecCCCCCceEEEEe-CCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCC
Confidence 6777777743332 2222222 22334455566665 5566666555 578999887764 32 222332222
Q ss_pred ceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCC-ceEEEe---ee----------cccCcEEEEEEecCCCcEEEEEeCC
Q 004214 284 IVLCLDTCALSSGKILIVTGSKDNSVRLWDSES-RCCVGV---GT----------GHMGAVGAVAFSKKLQNFLVSGSSD 349 (768)
Q Consensus 284 ~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~---~~----------~~~~~v~~~~~~~~~~~~l~s~~~d 349 (768)
....++ ..++++.++++...+|.|.++++.. +.+... .. .......++.++|+++.++++.-..
T Consensus 88 ~p~~i~--~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~ 165 (345)
T PF10282_consen 88 SPCHIA--VDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGA 165 (345)
T ss_dssp CEEEEE--ECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTT
T ss_pred CcEEEE--EecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCC
Confidence 223343 6678887666666799999999986 443332 11 1234578999999988666666667
Q ss_pred CeEEEEeCCCCCCCCccccccc-eeeEeeccCCCeEEEEEccCCCEEEEEe-CCCcEEEEeCC--CCc--eEEEEecc--
Q 004214 350 HTIKVWSFDGLSDDAEQPMNLK-AKAVVAAHGKDINSLAVAPNDSLVCTGS-QDRTACVWRLP--DLV--SVVTFRGH-- 421 (768)
Q Consensus 350 g~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~~--~~~--~~~~~~~~-- 421 (768)
..|.+|++...... .. ............+.++|+|+++++.+.. .++.|.+|++. ++. .+..+...
T Consensus 166 D~v~~~~~~~~~~~------l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~ 239 (345)
T PF10282_consen 166 DRVYVYDIDDDTGK------LTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPE 239 (345)
T ss_dssp TEEEEEEE-TTS-T------EEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCET
T ss_pred CEEEEEEEeCCCce------EEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccc
Confidence 78999998754211 11 1122234567789999999999886665 56789999987 432 22222211
Q ss_pred ----CCCeEEEEEccCCCEEEEee-CCCcEEEEeCC--CCc--eeEEeecCCCcEEEEEEEeCCCEEEEEeC-CCcEEEE
Q 004214 422 ----KRGIWSVEFSPVDQVVITAS-GDKTIKIWSIS--DGS--CLKTFEGHTSSVLRASFLTRGAQIVSCGA-DGLVKLW 491 (768)
Q Consensus 422 ----~~~v~~v~~s~~~~~l~t~~-~d~~i~iwd~~--~~~--~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-dg~i~iw 491 (768)
......++++|||++|+++. .+++|.+|++. ++. .+..+.........+.++|+|++|+++.. ++.|.+|
T Consensus 240 ~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf 319 (345)
T PF10282_consen 240 GFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVF 319 (345)
T ss_dssp TSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEE
T ss_pred cccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEE
Confidence 12578899999999888765 46789999993 333 33444444455889999999999988875 6689998
Q ss_pred EC--CCCeEEEEec-cCCCcEEEEEE
Q 004214 492 TV--RTGECIATYD-KHEDKIWALAV 514 (768)
Q Consensus 492 d~--~~~~~~~~~~-~~~~~v~~l~~ 514 (768)
++ .+|.+...-. ..-....|+.|
T Consensus 320 ~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 320 DIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp EEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred EEeCCCCcEEEecccccCCCCEEEeC
Confidence 76 4676544432 12334455554
No 255
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.39 E-value=3.1e-11 Score=121.20 Aligned_cols=191 Identities=8% Similarity=0.149 Sum_probs=153.3
Q ss_pred CCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEE------c--------------cCCCEEEEE
Q 004214 339 LQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAV------A--------------PNDSLVCTG 398 (768)
Q Consensus 339 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~------s--------------~~~~~l~~~ 398 (768)
+..+++....||.+++|+........+..... .-.+..++..| + .+-..++-|
T Consensus 4 ~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~-------~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlg 76 (541)
T KOG4547|consen 4 ALDYFALSTGDGRLRIWDTAKNQLQQEFAPIA-------SLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLG 76 (541)
T ss_pred hhheEeecCCCCeEEEEEccCceeeeeeccch-------hccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEee
Confidence 34589999999999999987653322111000 01111222222 1 234578889
Q ss_pred eCCCcEEEEeCCCCceEEEEe--ccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCC
Q 004214 399 SQDRTACVWRLPDLVSVVTFR--GHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRG 476 (768)
Q Consensus 399 ~~dg~i~i~d~~~~~~~~~~~--~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~ 476 (768)
...|.|.+|+...++....+. .|.++|.++.++.+-..|.+++.|+.+..|+...+..++.+.+....+.+++.+|||
T Consensus 77 t~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~ 156 (541)
T KOG4547|consen 77 TPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDG 156 (541)
T ss_pred cCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCC
Confidence 999999999999999888776 589999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCC-----CCEEEE-EeCCCcEEEEEcCCH
Q 004214 477 AQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKK-----TEMFAT-GGSDALVNLWHDSTA 538 (768)
Q Consensus 477 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~-----~~~l~s-~~~dg~v~vw~~~~~ 538 (768)
..|++++ +.|++||+.+++.+.+|.+|.++|.++.|.-+ |.++.+ ...+..+.+|-....
T Consensus 157 ~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~ 222 (541)
T KOG4547|consen 157 KILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKE 222 (541)
T ss_pred CEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEcc
Confidence 9999887 78999999999999999999999999999876 666655 445666888887653
No 256
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.38 E-value=4.6e-11 Score=111.46 Aligned_cols=253 Identities=21% Similarity=0.314 Sum_probs=174.6
Q ss_pred ccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCce-----EEEeeeccc------------CcEEEEEEecCCC-cEE
Q 004214 282 SEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC-----CVGVGTGHM------------GAVGAVAFSKKLQ-NFL 343 (768)
Q Consensus 282 ~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~~~------------~~v~~~~~~~~~~-~~l 343 (768)
.+.+.++. +...|.. |++|..+|.|.++.-.... ....++.|. ..|..+.|.+++. ..+
T Consensus 25 adiis~ve--f~~~Ge~-LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~F 101 (433)
T KOG1354|consen 25 ADIISAVE--FDHYGER-LATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEF 101 (433)
T ss_pred hcceeeEE--eecccce-EeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEE
Confidence 45667776 6677776 9999999999999643221 333444443 3567788877643 357
Q ss_pred EEEeCCCeEEEEeCCCCCCCCc--------c---------c----c-----ccceeeEeeccCCCeEEEEEccCCCEEEE
Q 004214 344 VSGSSDHTIKVWSFDGLSDDAE--------Q---------P----M-----NLKAKAVVAAHGKDINSLAVAPNDSLVCT 397 (768)
Q Consensus 344 ~s~~~dg~i~iwd~~~~~~~~~--------~---------~----~-----~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 397 (768)
+..+.|.+|++|.+........ . + . .........+|.-.|+++.++.|+..+++
T Consensus 102 LlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lS 181 (433)
T KOG1354|consen 102 LLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLS 181 (433)
T ss_pred EEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEee
Confidence 7788999999999865422110 0 0 0 00011122468888999999999998888
Q ss_pred EeCCCcEEEEeCCCCce---EEEEecc-----CCCeEEEEEccC-CCEEEEeeCCCcEEEEeCCCCcee----EEe----
Q 004214 398 GSQDRTACVWRLPDLVS---VVTFRGH-----KRGIWSVEFSPV-DQVVITASGDKTIKIWSISDGSCL----KTF---- 460 (768)
Q Consensus 398 ~~~dg~i~i~d~~~~~~---~~~~~~~-----~~~v~~v~~s~~-~~~l~t~~~d~~i~iwd~~~~~~~----~~~---- 460 (768)
+ .|=.|.+|+++--.. +.-++.+ ..-|++..|+|. .++++-.+..|+|++-|++...+- +.|
T Consensus 182 A-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepe 260 (433)
T KOG1354|consen 182 A-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPE 260 (433)
T ss_pred c-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhcccc
Confidence 6 467899999863322 2223333 235888999996 467777778899999999843211 111
Q ss_pred --------ecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEEC-CCCeEEEEeccCCC------------cE---EEEEEcC
Q 004214 461 --------EGHTSSVLRASFLTRGAQIVSCGADGLVKLWTV-RTGECIATYDKHED------------KI---WALAVGK 516 (768)
Q Consensus 461 --------~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~-~~~~~~~~~~~~~~------------~v---~~l~~s~ 516 (768)
..--..|..+.|+++|+|+++-+. -+|++||+ ...+++.++..|.. .| ..++|+.
T Consensus 261 dp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg 339 (433)
T KOG1354|consen 261 DPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG 339 (433)
T ss_pred CCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcC
Confidence 122357889999999999998654 57999999 56777777766542 22 4578999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCHH
Q 004214 517 KTEMFATGGSDALVNLWHDSTAA 539 (768)
Q Consensus 517 ~~~~l~s~~~dg~v~vw~~~~~~ 539 (768)
++.+++||+....+++++...+.
T Consensus 340 ~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 340 NDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred CcceEecccccceEEEecCCCCc
Confidence 99999999999999999965544
No 257
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.38 E-value=7.5e-11 Score=110.17 Aligned_cols=337 Identities=14% Similarity=0.203 Sum_probs=212.0
Q ss_pred eeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeeeeeeecceeEeeEEecCCCCCccccccccchhhhh
Q 004214 65 KCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLR-DYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIK 143 (768)
Q Consensus 65 ~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (768)
..++.++||...|+....-|-..-+++++.|.+++||--. .++.-..+.+.
T Consensus 15 ~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~---------------------------- 66 (404)
T KOG1409|consen 15 ELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHY---------------------------- 66 (404)
T ss_pred hhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhh----------------------------
Confidence 3456788999999998888888889999999999999432 22211111110
Q ss_pred cccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCc
Q 004214 144 KKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVP 223 (768)
Q Consensus 144 ~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~ 223 (768)
.....+...+.+....|+++-.+|.+.-+.+...-
T Consensus 67 ---------------------------------------------mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedf 101 (404)
T KOG1409|consen 67 ---------------------------------------------MPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDF 101 (404)
T ss_pred ---------------------------------------------CCCCceEeeeeccceEEEEEEecceEEEEEhhhhh
Confidence 11334556666777778888888888888776544
Q ss_pred ccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEE
Q 004214 224 EKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTG 303 (768)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~ 303 (768)
+ .....+....|...+..+.|.- ....+++.+.|..+.---.+.+..+..+.- ....+++. +.- .+...|
T Consensus 102 n---km~~~r~~~~h~~~v~~~if~~-~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~-~~~~t~~~--~d~---~~~fvG 171 (404)
T KOG1409|consen 102 N---KMTFLKDYLAHQARVSAIVFSL-THEWVLSTGKDKQFAWHCTESGNRLGGYNF-ETPASALQ--FDA---LYAFVG 171 (404)
T ss_pred h---hcchhhhhhhhhcceeeEEecC-CceeEEEeccccceEEEeeccCCcccceEe-eccCCCCc--eee---EEEEec
Confidence 3 2334455667788888888864 344566666655554433444332211110 00000110 000 035556
Q ss_pred eCCCeEEEEeC--CCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCC
Q 004214 304 SKDNSVRLWDS--ESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGK 381 (768)
Q Consensus 304 ~~dg~i~iwd~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (768)
...|.|..-.+ ..-.++..+.+|.+.+.+++|.|. +.++.+|..|..+.+||+.... .......+|.+
T Consensus 172 d~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~-~~~LfSg~~d~~vi~wdigg~~---------g~~~el~gh~~ 241 (404)
T KOG1409|consen 172 DHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPG-QRLLFSGASDHSVIMWDIGGRK---------GTAYELQGHND 241 (404)
T ss_pred ccccceEEEEEeecCCceEEEEcCcccceEEEEEcCC-CcEEEeccccCceEEEeccCCc---------ceeeeeccchh
Confidence 66666665544 345677888999999999999998 4489999999999999997532 24556678999
Q ss_pred CeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEE-----------------------------Eecc-----CCCeEE
Q 004214 382 DINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVT-----------------------------FRGH-----KRGIWS 427 (768)
Q Consensus 382 ~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~-----------------------------~~~~-----~~~v~~ 427 (768)
.|..+...+--+.+.+++.||.|.+|+.+....... ++.| ...|..
T Consensus 242 kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~ 321 (404)
T KOG1409|consen 242 KVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCG 321 (404)
T ss_pred hhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCc
Confidence 999999888889999999999999999864321100 0001 111211
Q ss_pred EEEccCCCEEEEeeCCCcEEEEeCC-------CCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCC
Q 004214 428 VEFSPVDQVVITASGDKTIKIWSIS-------DGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRT 495 (768)
Q Consensus 428 v~~s~~~~~l~t~~~d~~i~iwd~~-------~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 495 (768)
.+-+ +.....+-+..-.+|+-|.- +..++..+..-...|+.+.+...-.+|+++|.|..|+|||+++
T Consensus 322 ~c~s-~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqetlglLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 322 KCSS-NRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQETLGLLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred cccc-CccccccccceeEEEEecccchhhhcCCCCccccccccccceeEEEhhhhccceeecCCceEEEEEechh
Confidence 1111 11122222222344444421 2234555544456788888888888999999999999999864
No 258
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.38 E-value=1.3e-09 Score=114.30 Aligned_cols=216 Identities=10% Similarity=0.021 Sum_probs=128.9
Q ss_pred EEEEEeCCCcEEEEECCCceeeeeeeCCccceEEE--eeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccC---
Q 004214 254 YLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCL--DTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMG--- 328 (768)
Q Consensus 254 ~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l--~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--- 328 (768)
.+++++.++.++.||..+++.+............. ...... ++. ++.+..+|.+..+|..+++.+........
T Consensus 147 ~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~~~-v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~ 224 (377)
T TIGR03300 147 LVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-DGG-VLVGFAGGKLVALDLQTGQPLWEQRVALPKGR 224 (377)
T ss_pred EEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-CCE-EEEECCCCEEEEEEccCCCEeeeeccccCCCC
Confidence 34444555666666666666555443322111000 000111 233 67788889999999998877654321100
Q ss_pred -c------E-EEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeC
Q 004214 329 -A------V-GAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ 400 (768)
Q Consensus 329 -~------v-~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 400 (768)
. + ....+. +. .++.++.+|.+..||...+.. ..... .. ...... ..+..+++++.
T Consensus 225 ~~~~~~~~~~~~p~~~--~~-~vy~~~~~g~l~a~d~~tG~~----------~W~~~-~~-~~~~p~--~~~~~vyv~~~ 287 (377)
T TIGR03300 225 TELERLVDVDGDPVVD--GG-QVYAVSYQGRVAALDLRSGRV----------LWKRD-AS-SYQGPA--VDDNRLYVTDA 287 (377)
T ss_pred CchhhhhccCCccEEE--CC-EEEEEEcCCEEEEEECCCCcE----------EEeec-cC-CccCce--EeCCEEEEECC
Confidence 0 0 011111 22 677888899999999875521 11111 11 111112 24667888889
Q ss_pred CCcEEEEeCCCCceEEEEeccCC-CeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEE
Q 004214 401 DRTACVWRLPDLVSVVTFRGHKR-GIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQI 479 (768)
Q Consensus 401 dg~i~i~d~~~~~~~~~~~~~~~-~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 479 (768)
+|.+..+|..+++.+........ ...+... .+..+++++.+|.|+++|..+|+.+.++..+...+..--...+ ..|
T Consensus 288 ~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~-~~l 364 (377)
T TIGR03300 288 DGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVVG-DGL 364 (377)
T ss_pred CCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEEC-CEE
Confidence 99999999999988765532211 2222222 3678899999999999999999999998866654433322334 358
Q ss_pred EEEeCCCcEEEE
Q 004214 480 VSCGADGLVKLW 491 (768)
Q Consensus 480 ~s~~~dg~i~iw 491 (768)
+.++.||.|+.|
T Consensus 365 ~v~~~dG~l~~~ 376 (377)
T TIGR03300 365 LVQTRDGDLYAF 376 (377)
T ss_pred EEEeCCceEEEe
Confidence 889999998876
No 259
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.38 E-value=4.9e-09 Score=104.37 Aligned_cols=125 Identities=14% Similarity=0.068 Sum_probs=84.7
Q ss_pred EEec-CCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEe--eccCCCeEEEEEccCCCEEEEEeC----------
Q 004214 334 AFSK-KLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVV--AAHGKDINSLAVAPNDSLVCTGSQ---------- 400 (768)
Q Consensus 334 ~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~s~~~~~l~~~~~---------- 400 (768)
.+.+ ++. ++..... |+|.+.|+.........+......... .-....+.-++++|+++.++++..
T Consensus 200 ~~~~~dg~-~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~ 277 (352)
T TIGR02658 200 AYSNKSGR-LVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTA 277 (352)
T ss_pred ceEcCCCc-EEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCC
Confidence 3455 655 4444444 999999976442211111000000000 012334455999999998888532
Q ss_pred CCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCC-EEEEee-CCCcEEEEeCCCCceeEEee
Q 004214 401 DRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQ-VVITAS-GDKTIKIWSISDGSCLKTFE 461 (768)
Q Consensus 401 dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~t~~-~d~~i~iwd~~~~~~~~~~~ 461 (768)
.+.|.++|..+++.+..+.. ...+..++++||++ +|++.. .++.|.++|..+++.++++.
T Consensus 278 ~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 278 SRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVN 339 (352)
T ss_pred CCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence 24799999999999998874 56899999999999 888766 57889999999999999883
No 260
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.38 E-value=1.1e-09 Score=114.90 Aligned_cols=263 Identities=13% Similarity=0.053 Sum_probs=157.8
Q ss_pred CEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEE-
Q 004214 253 QYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVG- 331 (768)
Q Consensus 253 ~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~- 331 (768)
..+++++.++.++.+|..+++......... .+.+. ....++. ++.++.+|.+..||..+++.+...........
T Consensus 106 ~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~---p~v~~~~-v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~ 180 (377)
T TIGR03300 106 GLVFVGTEKGEVIALDAEDGKELWRAKLSS-EVLSP---PLVANGL-VVVRTNDGRLTALDAATGERLWTYSRVTPALTL 180 (377)
T ss_pred CEEEEEcCCCEEEEEECCCCcEeeeeccCc-eeecC---CEEECCE-EEEECCCCeEEEEEcCCCceeeEEccCCCceee
Confidence 345555556666666666666554443221 11111 1112344 66677899999999999988776654332211
Q ss_pred ----EEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEcc--CCCEEEEEeCCCcEE
Q 004214 332 ----AVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP--NDSLVCTGSQDRTAC 405 (768)
Q Consensus 332 ----~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~--~~~~l~~~~~dg~i~ 405 (768)
+.... + . .++.+..+|.+..+|..++...-......... .........+.-+| .+..+++++.+|.++
T Consensus 181 ~~~~sp~~~-~-~-~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g---~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~ 254 (377)
T TIGR03300 181 RGSASPVIA-D-G-GVLVGFAGGKLVALDLQTGQPLWEQRVALPKG---RTELERLVDVDGDPVVDGGQVYAVSYQGRVA 254 (377)
T ss_pred cCCCCCEEE-C-C-EEEEECCCCEEEEEEccCCCEeeeeccccCCC---CCchhhhhccCCccEEECCEEEEEEcCCEEE
Confidence 11122 2 2 57788888999999987653211100000000 00000000011111 355788888899999
Q ss_pred EEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCC-cEEEEEEEeCCCEEEEEeC
Q 004214 406 VWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTS-SVLRASFLTRGAQIVSCGA 484 (768)
Q Consensus 406 i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~s~~~ 484 (768)
.||..+++.+...... ...... ..+..+++++.||.+..+|..+|+.+........ ....... .+..|++++.
T Consensus 255 a~d~~tG~~~W~~~~~--~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~ 328 (377)
T TIGR03300 255 ALDLRSGRVLWKRDAS--SYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDF 328 (377)
T ss_pred EEECCCCcEEEeeccC--CccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeC
Confidence 9999999877665421 112222 2467788888999999999999988766532211 1122222 4678999999
Q ss_pred CCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEE
Q 004214 485 DGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 533 (768)
Q Consensus 485 dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw 533 (768)
+|.|+++|..+|+.+.++..+...+++--...+ ..|+.++.||.|..|
T Consensus 329 ~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 329 EGYLHWLSREDGSFVARLKTDGSGIASPPVVVG-DGLLVQTRDGDLYAF 376 (377)
T ss_pred CCEEEEEECCCCCEEEEEEcCCCccccCCEEEC-CEEEEEeCCceEEEe
Confidence 999999999999999998866654433222223 458889999998765
No 261
>PF09384 UTP15_C: UTP15 C terminal; InterPro: IPR018983 This entry represents the C-terminal domain of the U3 small nucleolar RNA-associated protein 15 (UTP15). This protein is involved in nucleolar processing of pre-18S ribosomal RNA, and is required for optimal pre-ribosomal RNA transcription by RNA polymerase I together with a subset of U3 proteins required for transcription (t-UTPs). UTP15 is a component of the ribosomal small subunit (SSU) processome, which is a large ribonucleoprotein (RNP) required for processing of precursors to the small subunit RNA, the 18S, of the ribosome [, ]. This domain is found C-terminal to the WD40 repeat (IPR001680 from INTERPRO). UTP15 associates with U3 snoRNA, which is ubiquitous in eukaryotes and is required for nucleolar processing of pre-18S ribosomal RNA []. ; GO: 0006364 rRNA processing, 0005730 nucleolus
Probab=99.36 E-value=4.7e-12 Score=109.73 Aligned_cols=128 Identities=16% Similarity=0.228 Sum_probs=113.2
Q ss_pred HhhhHHHHhhcccchHHHHHHHh-hcCCchhHHHHHHHHHhchhhHHHHHHHHhhcCHHHHHHHHHHHHHHhcCCCchHH
Q 004214 553 LRGQELENAVLDADYTKAIQVAF-ELRRPHKLFELFASVCRKREAELQIEKALHALGKEEIRQLLEYVREWNTKPKLCHV 631 (768)
Q Consensus 553 ~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~~~~ 631 (768)
.+.+.++.++..++|.+|++.++ ..+.|..++.++.++ .+++.+..|+.++++..+.++|+|+.+++++|+++.+
T Consensus 20 ~kl~~~D~~Lr~F~y~~ALD~aL~~~~~p~~~vavl~EL----~~R~~L~~AL~~Rde~~L~piL~Fl~k~i~~pr~~~~ 95 (148)
T PF09384_consen 20 KKLSKYDKLLRKFRYKKALDAALVKNKSPEVVVAVLEEL----IRRGALRAALAGRDEESLEPILKFLIKNITDPRYTRI 95 (148)
T ss_pred ccchHHHHHHHcCCHHHHHHHHHhcCCChHHHHHHHHHH----HHccHHHHHHHhCCHHHHHHHHHHHHHhCCCcccHHH
Confidence 35567889999999999999999 666675555555544 4456999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCcchhhcccChHhHHHhhccchHhHHHHHHHhHhhhhhhhee
Q 004214 632 AQFVLFQLFNIHPPTEIIEIKGISDVLEGLIPYTQRHFSRIDRLVRSTFLLDYT 685 (768)
Q Consensus 632 ~~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~ 685 (768)
+..++..+|++|++ .+..++.+.+.+..|...++++.+...+|+++.|+||++
T Consensus 96 l~~v~~~ildiY~~-~~~~s~~v~~~~~~L~~~v~~E~~~~~~l~~l~G~ld~L 148 (148)
T PF09384_consen 96 LVDVANIILDIYSP-VIGQSPEVDKLFQKLQRKVQEELQLQKELLELQGMLDML 148 (148)
T ss_pred HHHHHHHHHHHHHH-HhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhC
Confidence 99999999999976 566678899999999999999999999999999999975
No 262
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.35 E-value=3.8e-10 Score=120.60 Aligned_cols=233 Identities=17% Similarity=0.112 Sum_probs=151.2
Q ss_pred CcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCC---CeEEEEeCCCceEEEeeecccCcEEEEEEecC
Q 004214 262 EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKD---NSVRLWDSESRCCVGVGTGHMGAVGAVAFSKK 338 (768)
Q Consensus 262 ~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~ 338 (768)
..|.++|..... ...+..+...+.... ++++++. ++.+..+ ..|++||+.++..... ..+.+.+.+++|+|+
T Consensus 170 ~~l~~~d~~g~~-~~~l~~~~~~~~~p~--~Spdg~~-la~~~~~~~~~~i~v~d~~~g~~~~~-~~~~~~~~~~~~spD 244 (417)
T TIGR02800 170 YELQVADYDGAN-PQTITRSREPILSPA--WSPDGQK-LAYVSFESGKPEIYVQDLATGQREKV-ASFPGMNGAPAFSPD 244 (417)
T ss_pred ceEEEEcCCCCC-CEEeecCCCceeccc--CCCCCCE-EEEEEcCCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCC
Confidence 457778875443 344555666676666 7788887 4444432 4799999998765433 335566778999999
Q ss_pred CCcEEEEEeCCC--eEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCC-C--cEEEEeCCCCc
Q 004214 339 LQNFLVSGSSDH--TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQD-R--TACVWRLPDLV 413 (768)
Q Consensus 339 ~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g--~i~i~d~~~~~ 413 (768)
++.++++.+.++ .|.+|++.... ......+........|+|+|+.|+..+.. + .|+++++.+++
T Consensus 245 g~~l~~~~~~~~~~~i~~~d~~~~~-----------~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~ 313 (417)
T TIGR02800 245 GSKLAVSLSKDGNPDIYVMDLDGKQ-----------LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE 313 (417)
T ss_pred CCEEEEEECCCCCccEEEEECCCCC-----------EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 886666666655 47778876432 11112233334567899999988776543 3 58888887765
Q ss_pred eEEEEeccCCCeEEEEEccCCCEEEEeeCCC---cEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCC---c
Q 004214 414 SVVTFRGHKRGIWSVEFSPVDQVVITASGDK---TIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADG---L 487 (768)
Q Consensus 414 ~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~---~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg---~ 487 (768)
.. .+..+...+....|+|+|++++.++.++ .|.+||+.++... .+... .......|+|+|++|+.++.++ .
T Consensus 314 ~~-~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~ 390 (417)
T TIGR02800 314 VR-RLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDT-GLDESPSFAPNGRMILYATTRGGRGV 390 (417)
T ss_pred EE-EeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCC-CCCCCceECCCCCEEEEEEeCCCcEE
Confidence 43 3444556678889999999999888766 7999999876543 33222 2334568999999988877654 3
Q ss_pred EEEEECCCCeEEEEeccCCCcEEEEEE
Q 004214 488 VKLWTVRTGECIATYDKHEDKIWALAV 514 (768)
Q Consensus 488 i~iwd~~~~~~~~~~~~~~~~v~~l~~ 514 (768)
+.+.+. ++.....+..+.+.+..++|
T Consensus 391 l~~~~~-~g~~~~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 391 LGLVST-DGRFRARLPLGNGDVREPAW 416 (417)
T ss_pred EEEEEC-CCceeeECCCCCCCcCCCCC
Confidence 555553 45555555544445544444
No 263
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.35 E-value=1.4e-10 Score=108.39 Aligned_cols=245 Identities=16% Similarity=0.298 Sum_probs=170.5
Q ss_pred EEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECC-Cceeeeee-eCCccceEEEeeeeecCCCEEEEEEeCCCe
Q 004214 231 LSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLS-SMSCSYVL-AGHSEIVLCLDTCALSSGKILIVTGSKDNS 308 (768)
Q Consensus 231 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~-~~~~~~~~-~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~ 308 (768)
....+.|+.+.+++....+ .++-++..+.|.++++|--. .++.-..+ ..-..+++++. +.+.... |+.|-..|+
T Consensus 16 ll~~~eG~~d~vn~~~l~~-~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~--y~~e~~~-L~vg~~ngt 91 (404)
T KOG1409|consen 16 LLSKIEGSQDDVNAAILIP-KEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAME--YVSESRR-LYVGQDNGT 91 (404)
T ss_pred hhhhhcCchhhhhhheecc-CCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEee--eeccceE-EEEEEecce
Confidence 3455667777777766664 55678888899999999643 33322222 22234556664 5555555 899999999
Q ss_pred EEEEeC----CCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCC-CCCCCCccccccceeeEeeccCCCe
Q 004214 309 VRLWDS----ESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFD-GLSDDAEQPMNLKAKAVVAAHGKDI 383 (768)
Q Consensus 309 i~iwd~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~i 383 (768)
+.-+.+ +.....+....|...+..+.|+.. ...+++.+.|..+. |... .+... ....+. ...
T Consensus 92 vtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~-~e~V~s~~~dk~~~-~hc~e~~~~l--------g~Y~~~---~~~ 158 (404)
T KOG1409|consen 92 VTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLT-HEWVLSTGKDKQFA-WHCTESGNRL--------GGYNFE---TPA 158 (404)
T ss_pred EEEEEhhhhhhhcchhhhhhhhhcceeeEEecCC-ceeEEEeccccceE-EEeeccCCcc--------cceEee---ccC
Confidence 998864 345566677789999999999877 44788888887654 4332 21100 000000 111
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEeC--CCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCc-eeEEe
Q 004214 384 NSLAVAPNDSLVCTGSQDRTACVWRL--PDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGS-CLKTF 460 (768)
Q Consensus 384 ~~~~~s~~~~~l~~~~~dg~i~i~d~--~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~-~~~~~ 460 (768)
+++.+.-. +...|...|.|....+ ....++.++.+|..++++++|.|...+|.+|..|..+.+||+--++ ....+
T Consensus 159 t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el 236 (404)
T KOG1409|consen 159 SALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYEL 236 (404)
T ss_pred CCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeee
Confidence 11111111 5556666676666554 4456788999999999999999999999999999999999986544 34567
Q ss_pred ecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECC
Q 004214 461 EGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVR 494 (768)
Q Consensus 461 ~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 494 (768)
.+|...|..+...+--+.|++++.||.|.+|+.+
T Consensus 237 ~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 237 QGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMN 270 (404)
T ss_pred ccchhhhhhhhhhhhheeeeeccCCCeEEEEecc
Confidence 7899999999998889999999999999999974
No 264
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.35 E-value=1.3e-08 Score=99.42 Aligned_cols=217 Identities=12% Similarity=0.100 Sum_probs=153.3
Q ss_pred eecCCCEEEEEEeCCCeEEEEeCCCceEEEeeec---c---c-----CcEEEEE-EecCCCcEEEEEeCCCeEEEEeCCC
Q 004214 292 ALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTG---H---M-----GAVGAVA-FSKKLQNFLVSGSSDHTIKVWSFDG 359 (768)
Q Consensus 292 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~---~-----~~v~~~~-~~~~~~~~l~s~~~dg~i~iwd~~~ 359 (768)
..++|+..++ +..|.|.+||..+......--+ . . .+..-+. |++-...+++..|. |...+.+...
T Consensus 274 ~nsDGkrIvF--q~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~ 350 (668)
T COG4946 274 ANSDGKRIVF--QNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWD 350 (668)
T ss_pred cCCCCcEEEE--ecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCC
Confidence 5567776444 3467899999887554322111 0 0 0111111 33333445666554 4455554332
Q ss_pred CCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCC-cEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEE
Q 004214 360 LSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDR-TACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVI 438 (768)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~ 438 (768)
......++...|.-..+..+++-++.|..|| .+-|||..+++.. .+...-+.|.++..+|+|+.++
T Consensus 351 ------------~~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k-r~e~~lg~I~av~vs~dGK~~v 417 (668)
T COG4946 351 ------------GYSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK-RIEKDLGNIEAVKVSPDGKKVV 417 (668)
T ss_pred ------------CeeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEE-EeeCCccceEEEEEcCCCcEEE
Confidence 2233355667788888888888999999999 8999999887654 4555678899999999999999
Q ss_pred EeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCC----cEEEEECCCCeEEEEeccCCCcEEEEEE
Q 004214 439 TASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADG----LVKLWTVRTGECIATYDKHEDKIWALAV 514 (768)
Q Consensus 439 t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~~v~~l~~ 514 (768)
++.....+-+.|+.+|.....=+...+-|+...|+|+++++|-+--+| .|+++|+..++....-. ..+.=.+-+|
T Consensus 418 vaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta~DfsPaF 496 (668)
T COG4946 418 VANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTAYDFSPAF 496 (668)
T ss_pred EEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC-CcccccCccc
Confidence 999999999999999987766666778899999999999999988877 58999998887655432 3333456689
Q ss_pred cCCCCEEEEEe
Q 004214 515 GKKTEMFATGG 525 (768)
Q Consensus 515 s~~~~~l~s~~ 525 (768)
.||+++|.--+
T Consensus 497 D~d~ryLYfLs 507 (668)
T COG4946 497 DPDGRYLYFLS 507 (668)
T ss_pred CCCCcEEEEEe
Confidence 99999876544
No 265
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.35 E-value=2.5e-10 Score=104.47 Aligned_cols=272 Identities=19% Similarity=0.210 Sum_probs=177.1
Q ss_pred ecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEec--CCCC-EEEEEeCCCcEEEEECCCceeeeeeeC---Ccc
Q 004214 210 ADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLG--EEEQ-YLAVATNIEQVQVYDLSSMSCSYVLAG---HSE 283 (768)
Q Consensus 210 ~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~-~l~~~~~~~~i~i~d~~~~~~~~~~~~---~~~ 283 (768)
..|.+.+|++....... .........+.+..+.|.. .++. .++.+...|.|.+|..........+.+ ..-
T Consensus 44 R~Gkl~Lys~~d~~~~~----l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki 119 (339)
T KOG0280|consen 44 RSGKLHLYSLEDMKLSP----LDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKI 119 (339)
T ss_pred eccceEEEeecccccCc----cceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhh
Confidence 45677777776554322 1111112234556666632 3333 667788889999998765544444433 222
Q ss_pred ceE-EEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEE--eeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCC
Q 004214 284 IVL-CLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVG--VGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGL 360 (768)
Q Consensus 284 ~v~-~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 360 (768)
.+. ++..-+...+.. ++++..+|.+.+-+........ ..+.|.-+.+...|+...++++.+|+.|+.+..||++..
T Consensus 120 ~~~~~lslD~~~~~~~-i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p 198 (339)
T KOG0280|consen 120 SVVEALSLDISTSGTK-IFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIP 198 (339)
T ss_pred hheeeeEEEeeccCce-EEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCC
Confidence 222 333335566665 8889899999976665554444 788999999999999888889999999999999999832
Q ss_pred CCCCccccccceeeEeeccCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCC-CceEEEEeccCCCeEEEEEccCC--CE
Q 004214 361 SDDAEQPMNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQDRTACVWRLPD-LVSVVTFRGHKRGIWSVEFSPVD--QV 436 (768)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~v~~v~~s~~~--~~ 436 (768)
. .........|...|.++.-+| .+.++++|+.|-.|++||.++ ++++..-. -.++|+.+.++|.- .+
T Consensus 199 ~--------~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~l 269 (339)
T KOG0280|consen 199 K--------TFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRL 269 (339)
T ss_pred c--------ceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-cccceEEEEecchhhhHH
Confidence 1 112222456888999999887 688999999999999999985 44544332 45889999999953 34
Q ss_pred EEEeeCCCcEEEEeCCCCc-----eeEEeecCCCcEEEEEEEeCCCEEEEEeC-CCcEE-EEECCCC
Q 004214 437 VITASGDKTIKIWSISDGS-----CLKTFEGHTSSVLRASFLTRGAQIVSCGA-DGLVK-LWTVRTG 496 (768)
Q Consensus 437 l~t~~~d~~i~iwd~~~~~-----~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-dg~i~-iwd~~~~ 496 (768)
|+++-. .-.+|-+...+. .......|.+-+..-.|.....+|++++- |+.++ +|-.-++
T Consensus 270 L~~CMh-~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 270 LAACMH-NGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred HHHHHh-cCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 444444 446777765542 33445567666666666444456777653 55544 6654444
No 266
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.35 E-value=1.4e-08 Score=104.48 Aligned_cols=292 Identities=15% Similarity=0.149 Sum_probs=177.9
Q ss_pred cEEEEEEc--CCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEe----cCeEEEEeeccCcccceeeEEEe
Q 004214 160 GIVRMWNA--DSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTA----DQQLLLYTTVEVPEKKMELILSK 233 (768)
Q Consensus 160 g~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----dg~i~~~~~~~~~~~~~~~~~~~ 233 (768)
+.|..|++ .++.+...... ........++++|++..++++.. .+.+..|.+..... .+....
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~~---------~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g---~L~~~~ 80 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQTV---------AEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTG---TLTLLN 80 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEE---------EESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTT---EEEEEE
T ss_pred CcEEEEEEcCCCCCceEeeee---------cCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcc---eeEEee
Confidence 67888877 44443322211 12245567788899999988887 46888888876521 222222
Q ss_pred eecccCCceeEEEEecCCCCEEEEE-eCCCcEEEEECCC-ceeeee---ee----------CCccceEEEeeeeecCCCE
Q 004214 234 RLVGYNEEILDLKFLGEEEQYLAVA-TNIEQVQVYDLSS-MSCSYV---LA----------GHSEIVLCLDTCALSSGKI 298 (768)
Q Consensus 234 ~~~~~~~~i~~~~~~~~~~~~l~~~-~~~~~i~i~d~~~-~~~~~~---~~----------~~~~~v~~l~~~~~~~~~~ 298 (768)
...........+++.+ ++.+++++ ..+|.|.++++.. +..... +. .......++. +.|+++.
T Consensus 81 ~~~~~g~~p~~i~~~~-~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~--~~pdg~~ 157 (345)
T PF10282_consen 81 SVPSGGSSPCHIAVDP-DGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVV--FSPDGRF 157 (345)
T ss_dssp EEEESSSCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEE--E-TTSSE
T ss_pred eeccCCCCcEEEEEec-CCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEE--ECCCCCE
Confidence 3332333445566664 55555555 4689999999986 433322 11 1123345555 7788888
Q ss_pred EEEEEeCCCeEEEEeCCCce--EE--Eeee-cccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCcccccccee
Q 004214 299 LIVTGSKDNSVRLWDSESRC--CV--GVGT-GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAK 373 (768)
Q Consensus 299 ~l~~~~~dg~i~iwd~~~~~--~~--~~~~-~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 373 (768)
++++.-....|.+|++.... .. ..+. .....-..++|+|+++.+.++.-.++.|.++++..... .....
T Consensus 158 v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g------~~~~~ 231 (345)
T PF10282_consen 158 VYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDG------SLTEI 231 (345)
T ss_dssp EEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTT------EEEEE
T ss_pred EEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCC------ceeEE
Confidence 66666666789999987654 32 2222 34456789999999887777777899999999872211 11111
Q ss_pred eEee------ccCCCeEEEEEccCCCEEEEEeC-CCcEEEEeCC--CC--ceEEEEeccCCCeEEEEEccCCCEEEEee-
Q 004214 374 AVVA------AHGKDINSLAVAPNDSLVCTGSQ-DRTACVWRLP--DL--VSVVTFRGHKRGIWSVEFSPVDQVVITAS- 441 (768)
Q Consensus 374 ~~~~------~~~~~i~~~~~s~~~~~l~~~~~-dg~i~i~d~~--~~--~~~~~~~~~~~~v~~v~~s~~~~~l~t~~- 441 (768)
.... ........++++|||++|.++.. .+.|.+|++. ++ +.+..+.......+.++++|+|++|+++.
T Consensus 232 ~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~ 311 (345)
T PF10282_consen 232 QTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQ 311 (345)
T ss_dssp EEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEET
T ss_pred EEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEec
Confidence 1111 11225788999999999888764 5679999983 23 33444444455689999999999999887
Q ss_pred CCCcEEEEeC--CCCceeEEee-cCCCcEEEEEE
Q 004214 442 GDKTIKIWSI--SDGSCLKTFE-GHTSSVLRASF 472 (768)
Q Consensus 442 ~d~~i~iwd~--~~~~~~~~~~-~~~~~v~~~~~ 472 (768)
.++.|.+|++ .+|.+...-. ..-....|+.|
T Consensus 312 ~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 312 DSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp TTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred CCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 5678999976 4565443332 23344555655
No 267
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.35 E-value=6.3e-10 Score=118.16 Aligned_cols=235 Identities=14% Similarity=0.085 Sum_probs=148.3
Q ss_pred cEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCC--eEEEEeCCCceEEEeeecccCcEEEEEEecCCC
Q 004214 263 QVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDN--SVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQ 340 (768)
Q Consensus 263 ~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 340 (768)
.+.++|...... +.+..+...+.+.. ++|+++.++++...++ .|++||+.+++.... ....+......|+|+|+
T Consensus 199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~--wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l-t~~~g~~~~~~wSPDG~ 274 (448)
T PRK04792 199 QLMIADYDGYNE-QMLLRSPEPLMSPA--WSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV-TSFPGINGAPRFSPDGK 274 (448)
T ss_pred EEEEEeCCCCCc-eEeecCCCcccCce--ECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe-cCCCCCcCCeeECCCCC
Confidence 566677655443 34444555666666 7888887555544443 588889988765332 22233345789999998
Q ss_pred cEEEEEeCCCe--EEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeC-CC--cEEEEeCCCCceE
Q 004214 341 NFLVSGSSDHT--IKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ-DR--TACVWRLPDLVSV 415 (768)
Q Consensus 341 ~~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg--~i~i~d~~~~~~~ 415 (768)
.++++.+.+|. |.++|+..+. ......+.......+|+|||+.|+..+. ++ .|+++|+.+++..
T Consensus 275 ~La~~~~~~g~~~Iy~~dl~tg~-----------~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~ 343 (448)
T PRK04792 275 KLALVLSKDGQPEIYVVDIATKA-----------LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVS 343 (448)
T ss_pred EEEEEEeCCCCeEEEEEECCCCC-----------eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE
Confidence 77677777776 6666765431 1112223345567899999998877654 33 4777788777643
Q ss_pred EEEeccCCCeEEEEEccCCCEEEEeeCC-C--cEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCC-C--cEE
Q 004214 416 VTFRGHKRGIWSVEFSPVDQVVITASGD-K--TIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGAD-G--LVK 489 (768)
Q Consensus 416 ~~~~~~~~~v~~v~~s~~~~~l~t~~~d-~--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d-g--~i~ 489 (768)
. +..........+|+|+|++|+..+.+ + .|.++|+.++... .+... .......|+|||++|+..+.+ | .++
T Consensus 344 ~-Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~ 420 (448)
T PRK04792 344 R-LTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLA 420 (448)
T ss_pred E-EecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCC-CCCCCceECCCCCEEEEEEecCCceEEE
Confidence 3 22222233457899999988776543 3 4566788777643 23222 122345799999988766543 3 377
Q ss_pred EEECCCCeEEEEeccCCCcEEEEEEcC
Q 004214 490 LWTVRTGECIATYDKHEDKIWALAVGK 516 (768)
Q Consensus 490 iwd~~~~~~~~~~~~~~~~v~~l~~s~ 516 (768)
+++. +|.....+..+.+.+...+|+|
T Consensus 421 ~~~~-~G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 421 AVSI-DGRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred EEEC-CCCceEECcCCCCCcCCCccCC
Confidence 7776 6666777766667777888887
No 268
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.33 E-value=7.9e-10 Score=118.11 Aligned_cols=236 Identities=13% Similarity=0.045 Sum_probs=150.3
Q ss_pred cEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCC--CeEEEEeCCCceEEEeeecccCcEEEEEEecCCC
Q 004214 263 QVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKD--NSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQ 340 (768)
Q Consensus 263 ~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 340 (768)
.|.++|...+.. ..+..+...+.... ++++++.++++...+ ..|.+||+.+++.... ....+.+....|+|+|+
T Consensus 180 ~l~~~d~~g~~~-~~l~~~~~~~~~p~--wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l-~~~~g~~~~~~~SpDG~ 255 (430)
T PRK00178 180 TLQRSDYDGARA-VTLLQSREPILSPR--WSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQI-TNFEGLNGAPAWSPDGS 255 (430)
T ss_pred EEEEECCCCCCc-eEEecCCCceeeee--ECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEc-cCCCCCcCCeEECCCCC
Confidence 477778775544 44555666777766 778888744444333 3689999988865443 22334456789999988
Q ss_pred cEEEEEeCCC--eEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeC-CC--cEEEEeCCCCceE
Q 004214 341 NFLVSGSSDH--TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ-DR--TACVWRLPDLVSV 415 (768)
Q Consensus 341 ~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg--~i~i~d~~~~~~~ 415 (768)
.++++.+.+| .|.+||+.++.. ..+..+........|+|||+.++..+. +| .|+++++.+++..
T Consensus 256 ~la~~~~~~g~~~Iy~~d~~~~~~-----------~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~ 324 (430)
T PRK00178 256 KLAFVLSKDGNPEIYVMDLASRQL-----------SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE 324 (430)
T ss_pred EEEEEEccCCCceEEEEECCCCCe-----------EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEE
Confidence 6666666666 577778765421 112223344566789999998876654 33 5777888777643
Q ss_pred EEEeccCCCeEEEEEccCCCEEEEeeCC-C--cEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCC-C--cEE
Q 004214 416 VTFRGHKRGIWSVEFSPVDQVVITASGD-K--TIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGAD-G--LVK 489 (768)
Q Consensus 416 ~~~~~~~~~v~~v~~s~~~~~l~t~~~d-~--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d-g--~i~ 489 (768)
. +...........|+|+|+.|+..+.+ + .|.+||+.++... .+. +........|+|||++++..+.+ | .|.
T Consensus 325 ~-lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt-~~~~~~~p~~spdg~~i~~~~~~~g~~~l~ 401 (430)
T PRK00178 325 R-VTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR-ILT-DTSLDESPSVAPNGTMLIYATRQQGRGVLM 401 (430)
T ss_pred E-eecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEE-Ecc-CCCCCCCceECCCCCEEEEEEecCCceEEE
Confidence 3 22222334467899999998877643 2 5888999887643 332 22222356899999998776653 3 467
Q ss_pred EEECCCCeEEEEeccCCCcEEEEEEcCC
Q 004214 490 LWTVRTGECIATYDKHEDKIWALAVGKK 517 (768)
Q Consensus 490 iwd~~~~~~~~~~~~~~~~v~~l~~s~~ 517 (768)
++++. |.....+..+.+.+...+|+|-
T Consensus 402 ~~~~~-g~~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 402 LVSIN-GRVRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred EEECC-CCceEECcCCCCCcCCCccCCC
Confidence 77774 4444455555666777778763
No 269
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.33 E-value=3.7e-10 Score=103.40 Aligned_cols=267 Identities=16% Similarity=0.166 Sum_probs=180.4
Q ss_pred CcEEEEECCCceeee---eeeCCccceEEEeeeeecCCCE-EEEEEeCCCeEEEEeCCCceEEEeeeccc------CcEE
Q 004214 262 EQVQVYDLSSMSCSY---VLAGHSEIVLCLDTCALSSGKI-LIVTGSKDNSVRLWDSESRCCVGVGTGHM------GAVG 331 (768)
Q Consensus 262 ~~i~i~d~~~~~~~~---~~~~~~~~v~~l~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------~~v~ 331 (768)
|.+.+|++...+... ........+..+.|+..+.++. .++-+...|.|.++..........+.+-. ....
T Consensus 46 Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~l 125 (339)
T KOG0280|consen 46 GKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEAL 125 (339)
T ss_pred cceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeee
Confidence 678888877654432 1122344455555555555444 56777788999999766544333333221 1234
Q ss_pred EEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCC
Q 004214 332 AVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQDRTACVWRLP 410 (768)
Q Consensus 332 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~ 410 (768)
++.|++.+. -++++-.+|.+.+-+.... ........+.|.-.+....|+. +.+++.+|+.|+.+..||++
T Consensus 126 slD~~~~~~-~i~vs~s~G~~~~v~~t~~--------~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R 196 (339)
T KOG0280|consen 126 SLDISTSGT-KIFVSDSRGSISGVYETEM--------VLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIR 196 (339)
T ss_pred EEEeeccCc-eEEEEcCCCcEEEEeccee--------eeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEec
Confidence 677888766 4788888888885554422 3344556788999999999987 55789999999999999998
Q ss_pred -CCceEEE-EeccCCCeEEEEEcc-CCCEEEEeeCCCcEEEEeCCC-CceeEEeecCCCcEEEEEEEeCC--CEEEEEeC
Q 004214 411 -DLVSVVT-FRGHKRGIWSVEFSP-VDQVVITASGDKTIKIWSISD-GSCLKTFEGHTSSVLRASFLTRG--AQIVSCGA 484 (768)
Q Consensus 411 -~~~~~~~-~~~~~~~v~~v~~s~-~~~~l~t~~~d~~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~--~~l~s~~~ 484 (768)
.++.+.. .+.|..+|.++.-+| .+.+++||+.|-.|++||.++ ++++..-. -.+.|.++.++|.- ..|+++-.
T Consensus 197 ~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh 275 (339)
T KOG0280|consen 197 IPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMH 275 (339)
T ss_pred CCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHh
Confidence 3344433 556889999998887 478999999999999999984 66665544 44889999999853 34555555
Q ss_pred CCcEEEEECCCC--e---EEEEeccCCCcEEEEEEcCCCCEEEEEe-CCCcEE-EEEcCCHH
Q 004214 485 DGLVKLWTVRTG--E---CIATYDKHEDKIWALAVGKKTEMFATGG-SDALVN-LWHDSTAA 539 (768)
Q Consensus 485 dg~i~iwd~~~~--~---~~~~~~~~~~~v~~l~~s~~~~~l~s~~-~dg~v~-vw~~~~~~ 539 (768)
+| .+|-+...+ + .......|.+-+..-.|......|+|++ .|..++ +|-..+++
T Consensus 276 ~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~~ 336 (339)
T KOG0280|consen 276 NG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITGE 336 (339)
T ss_pred cC-ceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccCC
Confidence 55 566665543 3 3344556776666666755556788865 677744 88766653
No 270
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=8.9e-10 Score=115.97 Aligned_cols=220 Identities=11% Similarity=0.028 Sum_probs=137.7
Q ss_pred CeEEEEeCCCceEEEeeecccCcEEEEEEecCCCc--EEEEEeCCC--eEEEEeCCCCCCCCccccccceeeEeeccCCC
Q 004214 307 NSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQN--FLVSGSSDH--TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKD 382 (768)
Q Consensus 307 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (768)
..|.+.|...+.... +........+-.|+|+|+. ++++...+| .|.+.++..+.. ..+......
T Consensus 165 ~~l~~~d~dG~~~~~-lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~-----------~~lt~~~g~ 232 (428)
T PRK01029 165 GELWSVDYDGQNLRP-LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAG-----------KKILALQGN 232 (428)
T ss_pred ceEEEEcCCCCCceE-cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCc-----------eEeecCCCC
Confidence 467777776654433 3334556677899999876 333444444 466667764421 111222334
Q ss_pred eEEEEEccCCCEEEEEeC-CC----cEEEEeCCCC---ceEEEEeccCCCeEEEEEccCCCEEEEee-CCCcEEEE--eC
Q 004214 383 INSLAVAPNDSLVCTGSQ-DR----TACVWRLPDL---VSVVTFRGHKRGIWSVEFSPVDQVVITAS-GDKTIKIW--SI 451 (768)
Q Consensus 383 i~~~~~s~~~~~l~~~~~-dg----~i~i~d~~~~---~~~~~~~~~~~~v~~v~~s~~~~~l~t~~-~d~~i~iw--d~ 451 (768)
....+|+|||+.|+..+. +| .+..|++..+ .......++.......+|+|||+.|+..+ .+|...|| ++
T Consensus 233 ~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~ 312 (428)
T PRK01029 233 QLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQI 312 (428)
T ss_pred ccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEEC
Confidence 456899999998887653 23 3444676652 33333333333456789999999777655 45654555 44
Q ss_pred CC-CceeEEeecCCCcEEEEEEEeCCCEEEEEeCC---CcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeC-
Q 004214 452 SD-GSCLKTFEGHTSSVLRASFLTRGAQIVSCGAD---GLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGS- 526 (768)
Q Consensus 452 ~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~- 526 (768)
.. +.....+..+...+....|+|||++|+..+.+ ..|.+||+.+++...... ....+....|+|||+.|+..+.
T Consensus 313 ~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~-~~~~~~~p~wSpDG~~L~f~~~~ 391 (428)
T PRK01029 313 DPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTT-SPENKESPSWAIDSLHLVYSAGN 391 (428)
T ss_pred cccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccC-CCCCccceEECCCCCEEEEEECC
Confidence 32 33345555455667789999999998876543 369999999887654333 3345678899999998875443
Q ss_pred --CCcEEEEEcCCHH
Q 004214 527 --DALVNLWHDSTAA 539 (768)
Q Consensus 527 --dg~v~vw~~~~~~ 539 (768)
.+.|.+|++.+++
T Consensus 392 ~g~~~L~~vdl~~g~ 406 (428)
T PRK01029 392 SNESELYLISLITKK 406 (428)
T ss_pred CCCceEEEEECCCCC
Confidence 3458888877653
No 271
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.31 E-value=2.3e-08 Score=99.58 Aligned_cols=280 Identities=13% Similarity=0.046 Sum_probs=170.3
Q ss_pred CcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEe--------CCCcEEEEECCCCeeEEEecCccc------
Q 004214 10 RKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGS--------DDATVRVWDLLAKKCVATLDKHFS------ 75 (768)
Q Consensus 10 g~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~--------~dg~I~iWd~~~~~~~~~l~~h~~------ 75 (768)
++|.|.|..+++.+..+..-..+-. + +||||+..+++... .+..|.+||..+++.+..+.-...
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~ 104 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG 104 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence 8999999999998888874333322 4 99999985555441 577899999999999988874222
Q ss_pred -eeEEEEEcCCCCEEEEEe-C-CCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceE
Q 004214 76 -RVTSMAITSDGSTLISAG-R-DKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIH 152 (768)
Q Consensus 76 -~V~~l~fs~d~~~L~s~~-~-dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (768)
....++++|||++|+... . +..|.+.|+.+++.+..++......-+..... .
T Consensus 105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~-------------------------~ 159 (352)
T TIGR02658 105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTAND-------------------------T 159 (352)
T ss_pred CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCC-------------------------c
Confidence 234789999999999776 3 68999999999999999887543222222221 1
Q ss_pred EEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEE
Q 004214 153 FITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILS 232 (768)
Q Consensus 153 ~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~ 232 (768)
+...+.||......++............ +..+ ...-+..-.+.+.+...+.++..|.+.+.++.............
T Consensus 160 ~~~~~~Dg~~~~v~~d~~g~~~~~~~~v---f~~~-~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~ 235 (352)
T TIGR02658 160 FFMHCRDGSLAKVGYGTKGNPKIKPTEV---FHPE-DEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEA 235 (352)
T ss_pred cEEEeecCceEEEEecCCCceEEeeeee---ecCC-ccccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecceeee
Confidence 2233444444443332221111000000 0000 00000001345645566666666999999865433211111000
Q ss_pred eeec----c-cCCceeEEEEecCCCCEEEEE---------eCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCC-
Q 004214 233 KRLV----G-YNEEILDLKFLGEEEQYLAVA---------TNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGK- 297 (768)
Q Consensus 233 ~~~~----~-~~~~i~~~~~~~~~~~~l~~~---------~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~- 297 (768)
.... + ..+.+.-++++++.+..++.. ...+.|.++|..+++.+..+.. ...+..+. ++++++
T Consensus 236 ~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~ia--vS~Dgkp 312 (352)
T TIGR02658 236 FTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSIN--VSQDAKP 312 (352)
T ss_pred ccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEE--ECCCCCe
Confidence 0000 1 122233377775444444433 2235899999999999988764 23666776 788888
Q ss_pred EEEEEEeCCCeEEEEeCCCceEEEee
Q 004214 298 ILIVTGSKDNSVRLWDSESRCCVGVG 323 (768)
Q Consensus 298 ~~l~~~~~dg~i~iwd~~~~~~~~~~ 323 (768)
.++++...++.|.++|..+++.+..+
T Consensus 313 ~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 313 LLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred EEEEeCCCCCcEEEEECcCCeEEeee
Confidence 54445557889999999999888876
No 272
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.31 E-value=1.7e-09 Score=113.79 Aligned_cols=244 Identities=11% Similarity=0.043 Sum_probs=149.0
Q ss_pred CcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCE--EEEEEeCCC--eEEEEeCCCceEEEeeecccCcEEEEEEec
Q 004214 262 EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKI--LIVTGSKDN--SVRLWDSESRCCVGVGTGHMGAVGAVAFSK 337 (768)
Q Consensus 262 ~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~--~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~ 337 (768)
..|.+.|...+.... +.........-. |+|+++. ++++...+| .|.+.++.+++..... ...+......|+|
T Consensus 165 ~~l~~~d~dG~~~~~-lt~~~~~~~sP~--wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt-~~~g~~~~p~wSP 240 (428)
T PRK01029 165 GELWSVDYDGQNLRP-LTQEHSLSITPT--WMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKIL-ALQGNQLMPTFSP 240 (428)
T ss_pred ceEEEEcCCCCCceE-cccCCCCcccce--EccCCCceEEEEEEccCCCceEEEEECCCCCceEee-cCCCCccceEECC
Confidence 467777776555443 333333344444 7788765 233444443 5777788877644332 2344556789999
Q ss_pred CCCcEEEEEeCCC----eEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEe-CCCcEEEE--eCC
Q 004214 338 KLQNFLVSGSSDH----TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGS-QDRTACVW--RLP 410 (768)
Q Consensus 338 ~~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~--d~~ 410 (768)
||+.++++...+| .+..|++..+.. .................+|+|||+.|+..+ .+|...+| ++.
T Consensus 241 DG~~Laf~s~~~g~~di~~~~~~~~~g~~-------g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~ 313 (428)
T PRK01029 241 RKKLLAFISDRYGNPDLFIQSFSLETGAI-------GKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQID 313 (428)
T ss_pred CCCEEEEEECCCCCcceeEEEeecccCCC-------CcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECc
Confidence 9986666654433 334466553210 011122222223346789999999887765 45654444 443
Q ss_pred C-CceEEEEeccCCCeEEEEEccCCCEEEEeeCC---CcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeC--
Q 004214 411 D-LVSVVTFRGHKRGIWSVEFSPVDQVVITASGD---KTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGA-- 484 (768)
Q Consensus 411 ~-~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d---~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-- 484 (768)
. +.....+..+...+....|||||+.|+..+.+ ..|.+||+.+++...... ....+....|+|||++|+....
T Consensus 314 ~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~-~~~~~~~p~wSpDG~~L~f~~~~~ 392 (428)
T PRK01029 314 PEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTT-SPENKESPSWAIDSLHLVYSAGNS 392 (428)
T ss_pred ccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccC-CCCCccceEECCCCCEEEEEECCC
Confidence 2 23344455555677889999999988876543 469999998887644332 3445677899999998875443
Q ss_pred -CCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCC
Q 004214 485 -DGLVKLWTVRTGECIATYDKHEDKIWALAVGKKT 518 (768)
Q Consensus 485 -dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~ 518 (768)
...|+++|+.+++...... ..+.+...+|+|-.
T Consensus 393 g~~~L~~vdl~~g~~~~Lt~-~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 393 NESELYLISLITKKTRKIVI-GSGEKRFPSWGAFP 426 (428)
T ss_pred CCceEEEEECCCCCEEEeec-CCCcccCceecCCC
Confidence 3468899998877554443 45556677888753
No 273
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.30 E-value=1.2e-09 Score=116.77 Aligned_cols=205 Identities=14% Similarity=0.058 Sum_probs=139.3
Q ss_pred CeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCC---CeEEEEeCCCCCCCCccccccceeeEeeccCCCe
Q 004214 307 NSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSD---HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDI 383 (768)
Q Consensus 307 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i 383 (768)
..|.++|...... ..+..+...+...+|+|+|+. ++.++.+ ..|.+||+..+. ......+...+
T Consensus 170 ~~l~~~d~~g~~~-~~l~~~~~~~~~p~~Spdg~~-la~~~~~~~~~~i~v~d~~~g~-----------~~~~~~~~~~~ 236 (417)
T TIGR02800 170 YELQVADYDGANP-QTITRSREPILSPAWSPDGQK-LAYVSFESGKPEIYVQDLATGQ-----------REKVASFPGMN 236 (417)
T ss_pred ceEEEEcCCCCCC-EEeecCCCceecccCCCCCCE-EEEEEcCCCCcEEEEEECCCCC-----------EEEeecCCCCc
Confidence 3688888764433 334456667889999999885 4444432 479999987542 11122344556
Q ss_pred EEEEEccCCCEEEEE-eCCC--cEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeC-CC--cEEEEeCCCCcee
Q 004214 384 NSLAVAPNDSLVCTG-SQDR--TACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASG-DK--TIKIWSISDGSCL 457 (768)
Q Consensus 384 ~~~~~s~~~~~l~~~-~~dg--~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~-d~--~i~iwd~~~~~~~ 457 (768)
.+++|+|+|+.|+.. +.++ .|++|++.++... .+..+........|+|+|+.|+..+. ++ .|.++|+.+++.
T Consensus 237 ~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~- 314 (417)
T TIGR02800 237 GAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV- 314 (417)
T ss_pred cceEECCCCCEEEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE-
Confidence 678999999877654 4444 5888998876543 34445455567899999998876654 23 688888877654
Q ss_pred EEeecCCCcEEEEEEEeCCCEEEEEeCCC---cEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCC
Q 004214 458 KTFEGHTSSVLRASFLTRGAQIVSCGADG---LVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDA 528 (768)
Q Consensus 458 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg 528 (768)
..+..+...+....|+|+|++++.++.++ .|.+||+.++.... +... .......|+|+|++|+..+.++
T Consensus 315 ~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~-l~~~-~~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 315 RRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERV-LTDT-GLDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred EEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEeCC
Confidence 34444556677889999999999888775 78999998865433 2222 2334568999999988877654
No 274
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.29 E-value=3.4e-11 Score=134.64 Aligned_cols=198 Identities=19% Similarity=0.288 Sum_probs=154.2
Q ss_pred eCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeee-cccCcEEEEEEecCCCcEEEEEeCCCeEEEEeC
Q 004214 279 AGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGT-GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSF 357 (768)
Q Consensus 279 ~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~ 357 (768)
..+-..|.++. ..|... +.++|+.||.+++|....++.+..+. .-...|+.+.|+.+|+ -+..+..||.+.+|..
T Consensus 2205 k~~v~~v~r~~--sHp~~~-~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGn-k~~i~d~dg~l~l~q~ 2280 (2439)
T KOG1064|consen 2205 KHPVENVRRMT--SHPSDP-YYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGN-KFGIVDGDGDLSLWQA 2280 (2439)
T ss_pred ecccCceeeec--CCCCCc-eEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCC-ceeeeccCCceeeccc
Confidence 34556677775 444444 48999999999999998887776654 2337899999999987 4788889999999987
Q ss_pred CCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEe---CCCcEEEEeCCC-CceEEEEeccCCCeEEEEEccC
Q 004214 358 DGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGS---QDRTACVWRLPD-LVSVVTFRGHKRGIWSVEFSPV 433 (768)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~---~dg~i~i~d~~~-~~~~~~~~~~~~~v~~v~~s~~ 433 (768)
. .++......|+.....+.|-. ..+++++ .++.+.+||.-- +..-..-..|...++++++-|.
T Consensus 2281 ~-----------pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~ 2347 (2439)
T KOG1064|consen 2281 S-----------PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPK 2347 (2439)
T ss_pred C-----------CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCc
Confidence 6 224455577888888888765 5666654 467999999632 1111222779999999999999
Q ss_pred CCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEec
Q 004214 434 DQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD 503 (768)
Q Consensus 434 ~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 503 (768)
.++|++|+.+|.|++||++..+.+++++. +. ...++++|+..|.++||++.....+.++.
T Consensus 2348 ~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2348 HQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred ceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhcCc
Confidence 99999999999999999998888877764 33 56799999999999999998887777664
No 275
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.27 E-value=1.7e-09 Score=115.61 Aligned_cols=213 Identities=12% Similarity=0.008 Sum_probs=137.5
Q ss_pred eEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCC--CeEEEEeCCCCCCCCccccccceeeEeeccCCCeEE
Q 004214 308 SVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSD--HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINS 385 (768)
Q Consensus 308 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 385 (768)
.|.++|...+.. ..+..+...+....|+|+|+.++++...+ ..|.+|++..+.. ..+......+..
T Consensus 180 ~l~~~d~~g~~~-~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~-----------~~l~~~~g~~~~ 247 (430)
T PRK00178 180 TLQRSDYDGARA-VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR-----------EQITNFEGLNGA 247 (430)
T ss_pred EEEEECCCCCCc-eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE-----------EEccCCCCCcCC
Confidence 477778776544 33445667889999999987544444333 3688889875421 111112233456
Q ss_pred EEEccCCCEEEE-EeCCC--cEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeC-C--CcEEEEeCCCCceeEE
Q 004214 386 LAVAPNDSLVCT-GSQDR--TACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASG-D--KTIKIWSISDGSCLKT 459 (768)
Q Consensus 386 ~~~s~~~~~l~~-~~~dg--~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~-d--~~i~iwd~~~~~~~~~ 459 (768)
..|+|||+.|+. ...+| .|++||+.+++.. .+..+........|+|+|+.|+..+. + ..|+++|+.+++....
T Consensus 248 ~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~l 326 (430)
T PRK00178 248 PAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERV 326 (430)
T ss_pred eEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe
Confidence 899999998874 44455 5888899887654 34445556677899999998776553 3 3588888877764332
Q ss_pred eecCCCcEEEEEEEeCCCEEEEEeCC-C--cEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCC-C--cEEEE
Q 004214 460 FEGHTSSVLRASFLTRGAQIVSCGAD-G--LVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSD-A--LVNLW 533 (768)
Q Consensus 460 ~~~~~~~v~~~~~s~~~~~l~s~~~d-g--~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~d-g--~v~vw 533 (768)
.. .........|+|+|++|+..+.+ + .|.+||+.+++... +. +........|+|+|++++..+.+ | .|.++
T Consensus 327 t~-~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt-~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~ 403 (430)
T PRK00178 327 TF-VGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LT-DTSLDESPSVAPNGTMLIYATRQQGRGVLMLV 403 (430)
T ss_pred ec-CCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-cc-CCCCCCCceECCCCCEEEEEEecCCceEEEEE
Confidence 21 22233457899999999877653 3 58889998876533 22 12222356899999998876643 3 35555
Q ss_pred EcC
Q 004214 534 HDS 536 (768)
Q Consensus 534 ~~~ 536 (768)
+..
T Consensus 404 ~~~ 406 (430)
T PRK00178 404 SIN 406 (430)
T ss_pred ECC
Confidence 554
No 276
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.25 E-value=8.4e-08 Score=91.54 Aligned_cols=267 Identities=9% Similarity=0.101 Sum_probs=171.1
Q ss_pred CCcEEEEECCCceeee---eeeCCccceEEEeeeeecCCCEEEEEEeC---CCeEEEEeCCC--ceEEE--eeecccCcE
Q 004214 261 IEQVQVYDLSSMSCSY---VLAGHSEIVLCLDTCALSSGKILIVTGSK---DNSVRLWDSES--RCCVG--VGTGHMGAV 330 (768)
Q Consensus 261 ~~~i~i~d~~~~~~~~---~~~~~~~~v~~l~~~~~~~~~~~l~~~~~---dg~i~iwd~~~--~~~~~--~~~~~~~~v 330 (768)
+..|++|++.+..-.. .+..+...++-++ +.++.+. |.++.. +|.|..|.+.. |+... .......+-
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~--~~~~~~~-LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p 91 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLA--VNPDQRH-LYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPP 91 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEE--ECCCCCE-EEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCC
Confidence 5789999987432211 2233445556665 6666666 555543 57777776654 54332 222233344
Q ss_pred EEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCC----------eEEEEEccCCCEEEEEeC
Q 004214 331 GAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKD----------INSLAVAPNDSLVCTGSQ 400 (768)
Q Consensus 331 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~----------i~~~~~s~~~~~l~~~~~ 400 (768)
..++++++++.++++.-.-|.|.++-+....... .......|... +-...+.|++++|++.+.
T Consensus 92 ~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~-------~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DL 164 (346)
T COG2706 92 CYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQ-------PVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDL 164 (346)
T ss_pred eEEEECCCCCEEEEEEccCceEEEEEcccCCccc-------cceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeec
Confidence 8899999987444444456899999886532111 11111122222 678889999999988764
Q ss_pred -CCcEEEEeCCCCceEEEEe---ccCCCeEEEEEccCCCEEEEeeC-CCcEEEEeCCCC-ceeEEee---------cCCC
Q 004214 401 -DRTACVWRLPDLVSVVTFR---GHKRGIWSVEFSPVDQVVITASG-DKTIKIWSISDG-SCLKTFE---------GHTS 465 (768)
Q Consensus 401 -dg~i~i~d~~~~~~~~~~~---~~~~~v~~v~~s~~~~~l~t~~~-d~~i~iwd~~~~-~~~~~~~---------~~~~ 465 (768)
--.|.+|++..++....-. ........|.|+|++++..+.++ +++|-+|..... ..+..++ .-..
T Consensus 165 G~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~ 244 (346)
T COG2706 165 GTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTN 244 (346)
T ss_pred CCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCC
Confidence 2369999998776433211 24556789999999999887765 899999998763 2222222 1234
Q ss_pred cEEEEEEEeCCCEEEEEeC-CCcEEEEECCC--Ce--EEEEeccCCCcEEEEEEcCCCCEEEEEeCCC-cEEEEEcCC
Q 004214 466 SVLRASFLTRGAQIVSCGA-DGLVKLWTVRT--GE--CIATYDKHEDKIWALAVGKKTEMFATGGSDA-LVNLWHDST 537 (768)
Q Consensus 466 ~v~~~~~s~~~~~l~s~~~-dg~i~iwd~~~--~~--~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg-~v~vw~~~~ 537 (768)
+...+.+++||++|.++.. ...|-+|.+.. ++ .+.....+......+.|+|.|++|++++.++ .|.+|.++.
T Consensus 245 ~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~ 322 (346)
T COG2706 245 WAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDK 322 (346)
T ss_pred ceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcC
Confidence 6677899999999988765 33788887754 32 2223333444467899999999999998654 588887654
No 277
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.21 E-value=8.5e-09 Score=109.58 Aligned_cols=213 Identities=11% Similarity=0.031 Sum_probs=133.6
Q ss_pred eEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCC--eEEEEeCCCCCCCCccccccceeeEeeccCCCeEE
Q 004214 308 SVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDH--TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINS 385 (768)
Q Consensus 308 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 385 (768)
.|.++|...... ..+..+...+.+..|+|+|+.++++...++ .|.+||+..+.. . ...........
T Consensus 199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~----------~-~lt~~~g~~~~ 266 (448)
T PRK04792 199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR----------E-KVTSFPGINGA 266 (448)
T ss_pred EEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe----------E-EecCCCCCcCC
Confidence 566777765433 334456678889999999886555544444 577788765421 1 11111223346
Q ss_pred EEEccCCCEEEE-EeCCCc--EEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeC-C--CcEEEEeCCCCceeEE
Q 004214 386 LAVAPNDSLVCT-GSQDRT--ACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASG-D--KTIKIWSISDGSCLKT 459 (768)
Q Consensus 386 ~~~s~~~~~l~~-~~~dg~--i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~-d--~~i~iwd~~~~~~~~~ 459 (768)
.+|+|||+.|+. .+.+|. |+++|+.+++.. .+..+.......+|+|||+.|+..+. + ..|.++|+.+++....
T Consensus 267 ~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~L 345 (448)
T PRK04792 267 PRFSPDGKKLALVLSKDGQPEIYVVDIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRL 345 (448)
T ss_pred eeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEE
Confidence 899999998765 455664 778888877543 34445556678899999998876553 3 3577778877765432
Q ss_pred eecCCCcEEEEEEEeCCCEEEEEeC-CC--cEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeC-CCc--EEEE
Q 004214 460 FEGHTSSVLRASFLTRGAQIVSCGA-DG--LVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGS-DAL--VNLW 533 (768)
Q Consensus 460 ~~~~~~~v~~~~~s~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~-dg~--v~vw 533 (768)
...........|+|||++|+..+. ++ .|.++|+.+++... +... .......|+|+|++|+..+. +|. +.++
T Consensus 346 -t~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~ 422 (448)
T PRK04792 346 -TFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAV 422 (448)
T ss_pred -ecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEecCCceEEEEE
Confidence 212223345789999999877655 34 45667888876533 2212 12224579999998876554 343 5556
Q ss_pred EcC
Q 004214 534 HDS 536 (768)
Q Consensus 534 ~~~ 536 (768)
+..
T Consensus 423 ~~~ 425 (448)
T PRK04792 423 SID 425 (448)
T ss_pred ECC
Confidence 653
No 278
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.20 E-value=1.9e-08 Score=116.83 Aligned_cols=247 Identities=14% Similarity=0.172 Sum_probs=158.5
Q ss_pred eecCCCEEEEEEeCCCeEEEEeCCCceEEEeee-cc------------cCcEEEEEEecCCCcEEEEEeCCCeEEEEeCC
Q 004214 292 ALSSGKILIVTGSKDNSVRLWDSESRCCVGVGT-GH------------MGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFD 358 (768)
Q Consensus 292 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~------------~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 358 (768)
..+.++.++++-+.++.|++||........... +. -.....+++++++..++++-..++.|+.+|+.
T Consensus 575 vd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~ 654 (1057)
T PLN02919 575 IDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREIDFV 654 (1057)
T ss_pred EECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEEecC
Confidence 444556667777888999999986543322211 11 12357889998866555655667889999876
Q ss_pred CCCCCCccc-----cccceeeE-eeccCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCceEEEEecc----------
Q 004214 359 GLSDDAEQP-----MNLKAKAV-VAAHGKDINSLAVAP-NDSLVCTGSQDRTACVWRLPDLVSVVTFRGH---------- 421 (768)
Q Consensus 359 ~~~~~~~~~-----~~~~~~~~-~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---------- 421 (768)
......... ........ ....-.....++++| ++.++++.+.++.|++||..++... .+.+.
T Consensus 655 ~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~ 733 (1057)
T PLN02919 655 NETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSS 733 (1057)
T ss_pred CCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCc
Confidence 431100000 00000000 000012346899999 5667777778899999998776432 22111
Q ss_pred -----CCCeEEEEEccCCC-EEEEeeCCCcEEEEeCCCCceeEEe-------------ecC--------CCcEEEEEEEe
Q 004214 422 -----KRGIWSVEFSPVDQ-VVITASGDKTIKIWSISDGSCLKTF-------------EGH--------TSSVLRASFLT 474 (768)
Q Consensus 422 -----~~~v~~v~~s~~~~-~l~t~~~d~~i~iwd~~~~~~~~~~-------------~~~--------~~~v~~~~~s~ 474 (768)
-...+.++++|+++ ++++-+.++.|++||+.++...... ..+ -.....+++++
T Consensus 734 ~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~ 813 (1057)
T PLN02919 734 GTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAK 813 (1057)
T ss_pred cccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeC
Confidence 12356799999988 4555566799999999876532111 000 11345789999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEec-------------cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCHH
Q 004214 475 RGAQIVSCGADGLVKLWTVRTGECIATYD-------------KHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAA 539 (768)
Q Consensus 475 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------------~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~~ 539 (768)
+|+.+++-..++.|++||..++....... +.-.....++++++|+.+++-+.++.|++|++.+++
T Consensus 814 dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 814 DGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred CCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence 99988888889999999998877654321 111246789999999999999999999999998754
No 279
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.19 E-value=8.6e-11 Score=131.54 Aligned_cols=191 Identities=15% Similarity=0.287 Sum_probs=154.4
Q ss_pred ecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCc
Q 004214 324 TGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRT 403 (768)
Q Consensus 324 ~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~ 403 (768)
..+-..|.++.-+|... +.++|+.||.|++|....+.. ...........|+.+.|+.+|+.+..+..||.
T Consensus 2205 k~~v~~v~r~~sHp~~~-~Yltgs~dgsv~~~~w~~~~~---------v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~ 2274 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDP-YYLTGSQDGSVRMFEWGHGQQ---------VVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGD 2274 (2439)
T ss_pred ecccCceeeecCCCCCc-eEEecCCCceEEEEeccCCCe---------EEEeeccCcchhhhhhhcccCCceeeeccCCc
Confidence 34556677888888755 789999999999998875421 11122223378899999999999999999999
Q ss_pred EEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEee---CCCcEEEEeCCC---CceeEEeecCCCcEEEEEEEeCCC
Q 004214 404 ACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITAS---GDKTIKIWSISD---GSCLKTFEGHTSSVLRASFLTRGA 477 (768)
Q Consensus 404 i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~---~d~~i~iwd~~~---~~~~~~~~~~~~~v~~~~~s~~~~ 477 (768)
+.+|... .++....+.|....+.+.|-. ..+++++ .++.+.+||..- ..++. ..|.+.++++++.|..+
T Consensus 2275 l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~q 2349 (2439)
T KOG1064|consen 2275 LSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQ 2349 (2439)
T ss_pred eeecccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcce
Confidence 9999987 667777888999999999984 6677765 478999999532 23444 67999999999999999
Q ss_pred EEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCHH
Q 004214 478 QIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAA 539 (768)
Q Consensus 478 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~~ 539 (768)
.|++||.+|.|++||++..+.++++.. +. ...++++|+..|.++||++....
T Consensus 2350 llisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ 2401 (2439)
T KOG1064|consen 2350 LLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFG 2401 (2439)
T ss_pred EEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccc
Confidence 999999999999999999888877764 44 67799999999999999998754
No 280
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.19 E-value=3.6e-08 Score=114.53 Aligned_cols=253 Identities=13% Similarity=0.087 Sum_probs=162.1
Q ss_pred eEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeC--C------------ccceEEEeeeeecCCCEEEEEEeCCCe
Q 004214 243 LDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAG--H------------SEIVLCLDTCALSSGKILIVTGSKDNS 308 (768)
Q Consensus 243 ~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~--~------------~~~v~~l~~~~~~~~~~~l~~~~~dg~ 308 (768)
..+++.+.++.++++-+.++.|++||..... +..+.+ . -.....++ +.++++.++++-..++.
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~-i~~ig~~g~~G~~dG~~~~a~f~~P~GIa--vd~~gn~LYVaDt~n~~ 647 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNF-IVQIGSTGEEGLRDGSFEDATFNRPQGLA--YNAKKNLLYVADTENHA 647 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCE-EEEEccCCCcCCCCCchhccccCCCcEEE--EeCCCCEEEEEeCCCce
Confidence 3466666667777777888999999986543 323322 1 11234554 55666664555566688
Q ss_pred EEEEeCCCceEEEeee-cc---------------cCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCcc----cc
Q 004214 309 VRLWDSESRCCVGVGT-GH---------------MGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQ----PM 368 (768)
Q Consensus 309 i~iwd~~~~~~~~~~~-~~---------------~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~----~~ 368 (768)
|+.+|..++....... +. -..-..++++|++..++++.+.++.|++||...+...... ..
T Consensus 648 Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~ 727 (1057)
T PLN02919 648 LREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER 727 (1057)
T ss_pred EEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccc
Confidence 9999988765432211 00 1123578999966667888888999999998654210000 00
Q ss_pred ccceeeEeeccCCCeEEEEEccCCCE-EEEEeCCCcEEEEeCCCCceEEEEec---------------------cCCCeE
Q 004214 369 NLKAKAVVAAHGKDINSLAVAPNDSL-VCTGSQDRTACVWRLPDLVSVVTFRG---------------------HKRGIW 426 (768)
Q Consensus 369 ~~~~~~~~~~~~~~i~~~~~s~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~---------------------~~~~v~ 426 (768)
...........-.....++++|+++. +++-+.++.|++||+.++.......+ .-....
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 00000000011234678999999884 45556678999999987653211100 011246
Q ss_pred EEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEee-------------cCCCcEEEEEEEeCCCEEEEEeCCCcEEEEEC
Q 004214 427 SVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFE-------------GHTSSVLRASFLTRGAQIVSCGADGLVKLWTV 493 (768)
Q Consensus 427 ~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~-------------~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 493 (768)
.++++++|+++++-..++.|++||..++....... +.-.....++++++|+.+++-+.++.|++||+
T Consensus 808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~ 887 (1057)
T PLN02919 808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDL 887 (1057)
T ss_pred eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEEC
Confidence 88999999999998999999999998776543221 11235678999999998888888999999999
Q ss_pred CCCeE
Q 004214 494 RTGEC 498 (768)
Q Consensus 494 ~~~~~ 498 (768)
.+++.
T Consensus 888 ~~~~~ 892 (1057)
T PLN02919 888 NKGEA 892 (1057)
T ss_pred CCCcc
Confidence 88764
No 281
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.18 E-value=8.1e-09 Score=93.43 Aligned_cols=225 Identities=16% Similarity=0.059 Sum_probs=152.7
Q ss_pred EEEEEeCCCeEEEEeCCCceE-EEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEee
Q 004214 299 LIVTGSKDNSVRLWDSESRCC-VGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVA 377 (768)
Q Consensus 299 ~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 377 (768)
.|+.|+..|...+|...+.+. +.....|...|+-+.-.-+...-+..++.|.++++.++....... .
T Consensus 86 ~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~------------~ 153 (344)
T KOG4532|consen 86 TLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKF------------A 153 (344)
T ss_pred EEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccc------------e
Confidence 389999999999999986543 333333444333322222223347778899999999887542211 1
Q ss_pred ccC--CCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC-ceE-E-EEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCC
Q 004214 378 AHG--KDINSLAVAPNDSLVCTGSQDRTACVWRLPDL-VSV-V-TFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSIS 452 (768)
Q Consensus 378 ~~~--~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~-~~~-~-~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~ 452 (768)
.|. -.+.+++++++++++++.+....|..|.++.. +.+ . .....+..-.+..|+.....+|++..||++.|||++
T Consensus 154 ~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR 233 (344)
T KOG4532|consen 154 VHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVR 233 (344)
T ss_pred eeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEec
Confidence 122 23789999999999999999999999998653 222 2 233345566788999999999999999999999998
Q ss_pred CCc-eeE----EeecCCCcEEEEEEEeCCC--EEEEEeCCCcEEEEECCCCeEEEEecc-------CCC-cEEEEEEcCC
Q 004214 453 DGS-CLK----TFEGHTSSVLRASFLTRGA--QIVSCGADGLVKLWTVRTGECIATYDK-------HED-KIWALAVGKK 517 (768)
Q Consensus 453 ~~~-~~~----~~~~~~~~v~~~~~s~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~-------~~~-~v~~l~~s~~ 517 (768)
... +.. +-..|.+.+..+.|++.|. +|+..-.-+.+.+-|++++...+.+.. |.. .|..-.|+.+
T Consensus 234 ~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~ 313 (344)
T KOG4532|consen 234 NMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNE 313 (344)
T ss_pred ccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCC
Confidence 753 322 2236899999999998665 455555557899999999876655432 222 2666777777
Q ss_pred CCEEEEEeCCCcEEEEEcC
Q 004214 518 TEMFATGGSDALVNLWHDS 536 (768)
Q Consensus 518 ~~~l~s~~~dg~v~vw~~~ 536 (768)
+.-+.+..++. +.=|++.
T Consensus 314 n~s~~v~~e~~-~ae~ni~ 331 (344)
T KOG4532|consen 314 NESNDVKNELQ-GAEYNIL 331 (344)
T ss_pred Ccccccccchh-hheeecc
Confidence 66655555442 3444443
No 282
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.17 E-value=1.9e-10 Score=113.81 Aligned_cols=289 Identities=16% Similarity=0.239 Sum_probs=197.7
Q ss_pred EEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCC-------ceeeeeeeCCccceEEEeeeeecCCCEEEEE
Q 004214 230 ILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSS-------MSCSYVLAGHSEIVLCLDTCALSSGKILIVT 302 (768)
Q Consensus 230 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~-------~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~ 302 (768)
.......||...|..+... ++++.+++++.|.+|++|.+.. ..+..+++.|..+|..+. +..+.+. ++
T Consensus 726 irL~nf~GH~~~iRai~Ai-dNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~ig--fL~~lr~-i~- 800 (1034)
T KOG4190|consen 726 IRLCNFTGHQEKIRAIAAI-DNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIG--FLADLRS-IA- 800 (1034)
T ss_pred eeeecccCcHHHhHHHHhc-ccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCccccee--eeeccce-ee-
Confidence 3445677888888888776 4778899999999999999863 347778899999999997 5555544 44
Q ss_pred EeCCCeEEEEeCCCceEEEeee--cccCcEEEEEEecC-CCcEEEEE-eCCCeEEEEeCCCCCCCCccccccceeeEeec
Q 004214 303 GSKDNSVRLWDSESRCCVGVGT--GHMGAVGAVAFSKK-LQNFLVSG-SSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAA 378 (768)
Q Consensus 303 ~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~-~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 378 (768)
+.||.|++||.--++++.... ...+.+..+..-++ .+.++++| +...+|+++|.+...-..+. ......+
T Consensus 801 -ScD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~-----kVcna~~ 874 (1034)
T KOG4190|consen 801 -SCDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCEL-----KVCNAPG 874 (1034)
T ss_pred -eccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeE-----EeccCCC
Confidence 458999999988777665332 12233333333343 34455555 77899999998854311100 0111123
Q ss_pred cCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEE-EeCCCCcee
Q 004214 379 HGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKI-WSISDGSCL 457 (768)
Q Consensus 379 ~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~i-wd~~~~~~~ 457 (768)
.+.-++++++.|.|+.++++-.+|+|.+.|.++|+.+...+........++ .|.++.|+....|.++.+ |...+|...
T Consensus 875 Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgimh 953 (1034)
T KOG4190|consen 875 PNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMH 953 (1034)
T ss_pred CchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeee
Confidence 345688999999999999999999999999999999887776555444444 466778888888899999 988888776
Q ss_pred EEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECC-C---CeEEEEe--ccCCCcEEEEEEcCCCCEEEEEeCCCcEE
Q 004214 458 KTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVR-T---GECIATY--DKHEDKIWALAVGKKTEMFATGGSDALVN 531 (768)
Q Consensus 458 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~-~---~~~~~~~--~~~~~~v~~l~~s~~~~~l~s~~~dg~v~ 531 (768)
.+.+....+..-+ -.-|.-|+++.....+.+|.-. . ...+..+ +...+..++++.-|-...+.+|.+.|.|.
T Consensus 954 ~q~kpppepahfl--qsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~Ia 1031 (1034)
T KOG4190|consen 954 LQDKPPPEPAHFL--QSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIA 1031 (1034)
T ss_pred eccCCCCcchhhh--hccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCcee
Confidence 6665443332211 1235567776666667777321 0 1112222 23567788999999888888999999887
Q ss_pred E
Q 004214 532 L 532 (768)
Q Consensus 532 v 532 (768)
+
T Consensus 1032 L 1032 (1034)
T KOG4190|consen 1032 L 1032 (1034)
T ss_pred e
Confidence 5
No 283
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.16 E-value=1.5e-08 Score=91.84 Aligned_cols=233 Identities=10% Similarity=0.030 Sum_probs=153.1
Q ss_pred CCCEEEEEeCCCcEEEEECCCceeee-eeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCc
Q 004214 251 EEQYLAVATNIEQVQVYDLSSMSCSY-VLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGA 329 (768)
Q Consensus 251 ~~~~l~~~~~~~~i~i~d~~~~~~~~-~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 329 (768)
...+||.|+..|...+|...+.+... ....|...|.-.. -..+...-+..++.|.++++.++..+..........-.
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~--r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~ 160 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVK--RYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLT 160 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeecccccchhhhh--hhcccccceeeccCCcceeEEEEecCcccceeeccccc
Confidence 45689999999999999998765433 3344444443332 11122222667778888888887654433222212223
Q ss_pred EEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeC
Q 004214 330 VGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRL 409 (768)
Q Consensus 330 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~ 409 (768)
+.+++++++++ ++++.+....|..|.++.... ...........+.--+..|+.....+|++++||++.|||+
T Consensus 161 ~ns~~~snd~~-~~~~Vgds~~Vf~y~id~~se-------y~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DV 232 (344)
T KOG4532|consen 161 QNSLHYSNDPS-WGSSVGDSRRVFRYAIDDESE-------YIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDV 232 (344)
T ss_pred eeeeEEcCCCc-eEEEecCCCcceEEEeCCccc-------eeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEe
Confidence 78899999966 888889999999999885432 1112233344455567889999999999999999999999
Q ss_pred CCCceEE-----EEeccCCCeEEEEEccCC--CEEEEeeCCCcEEEEeCCCCceeEEee-------cCCC-cEEEEEEEe
Q 004214 410 PDLVSVV-----TFRGHKRGIWSVEFSPVD--QVVITASGDKTIKIWSISDGSCLKTFE-------GHTS-SVLRASFLT 474 (768)
Q Consensus 410 ~~~~~~~-----~~~~~~~~v~~v~~s~~~--~~l~t~~~d~~i~iwd~~~~~~~~~~~-------~~~~-~v~~~~~s~ 474 (768)
+...... +-..|.+.+..+.|++.| .+|+..-.=+.+.+.|++++.-.+.+. .|.. .|..-.|+.
T Consensus 233 R~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~ 312 (344)
T KOG4532|consen 233 RNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNN 312 (344)
T ss_pred cccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccC
Confidence 8654322 223488999999999865 345555555889999999987555443 2322 377777777
Q ss_pred CCCEEEEEeCCCcEEEEECC
Q 004214 475 RGAQIVSCGADGLVKLWTVR 494 (768)
Q Consensus 475 ~~~~l~s~~~dg~i~iwd~~ 494 (768)
++.-+.+.+++. +.=|++.
T Consensus 313 ~n~s~~v~~e~~-~ae~ni~ 331 (344)
T KOG4532|consen 313 ENESNDVKNELQ-GAEYNIL 331 (344)
T ss_pred CCcccccccchh-hheeecc
Confidence 766665555432 3344443
No 284
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.15 E-value=1.7e-08 Score=100.61 Aligned_cols=128 Identities=14% Similarity=0.112 Sum_probs=81.3
Q ss_pred eEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeC--CCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEE
Q 004214 308 SVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSS--DHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINS 385 (768)
Q Consensus 308 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 385 (768)
.+.|+.++........-.-...|...+|-|.|..+.+..+. ..++.+|.+..... . ...+..-.....+.
T Consensus 426 n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~------~--~~lVk~~dk~~~N~ 497 (698)
T KOG2314|consen 426 NLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIK------K--PSLVKELDKKFANT 497 (698)
T ss_pred eEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCC------c--hhhhhhhcccccce
Confidence 45566655443332223356788899999998876554444 35688888774211 1 11111112255788
Q ss_pred EEEccCCCEEEEEe---CCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCC
Q 004214 386 LAVAPNDSLVCTGS---QDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGD 443 (768)
Q Consensus 386 ~~~s~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d 443 (768)
+.|+|.|++++++. ..|.+.++|+.-.....+-.......+.+.|.|.|++++|++..
T Consensus 498 vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~ 558 (698)
T KOG2314|consen 498 VFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSS 558 (698)
T ss_pred EEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeeeh
Confidence 99999999988765 46889999987432222222222356789999999999998763
No 285
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.12 E-value=8e-07 Score=85.03 Aligned_cols=291 Identities=11% Similarity=0.110 Sum_probs=175.7
Q ss_pred cCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeC--CCcEEEEECCC--ceeeee--eeCCccc
Q 004214 211 DQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATN--IEQVQVYDLSS--MSCSYV--LAGHSEI 284 (768)
Q Consensus 211 dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~--~~~i~i~d~~~--~~~~~~--~~~~~~~ 284 (768)
+..|+.|++....... .........+.++-+++.+....+.++... .|.|..|.+.. |..... ......+
T Consensus 15 s~gI~v~~ld~~~g~l----~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~ 90 (346)
T COG2706 15 SQGIYVFNLDTKTGEL----SLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSP 90 (346)
T ss_pred CCceEEEEEeCccccc----chhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCC
Confidence 5678888877443211 112233445567778887544333344333 57777777664 443321 1112222
Q ss_pred eEEEeeeeecCCCEEEEEEeCCCeEEEEeCCC-ceEEEe--eecccCc----------EEEEEEecCCCcEEEEEeCCCe
Q 004214 285 VLCLDTCALSSGKILIVTGSKDNSVRLWDSES-RCCVGV--GTGHMGA----------VGAVAFSKKLQNFLVSGSSDHT 351 (768)
Q Consensus 285 v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~--~~~~~~~----------v~~~~~~~~~~~~l~s~~~dg~ 351 (768)
...++ ...+++.++.+.-..|.|.++-++. |.+... ...|.+. +....+.|+++.++++.-.--.
T Consensus 91 p~yvs--vd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dr 168 (346)
T COG2706 91 PCYVS--VDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDR 168 (346)
T ss_pred CeEEE--ECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCce
Confidence 23343 6677777566666678999998865 433221 2234444 8889999997743333334456
Q ss_pred EEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEe-CCCcEEEEeCCCC-ceEEEEec---------
Q 004214 352 IKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGS-QDRTACVWRLPDL-VSVVTFRG--------- 420 (768)
Q Consensus 352 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~-~~~~~~~~--------- 420 (768)
|.+|++..+......+.. .......+.|.|+|++++..+.+ .+++|.+|..... ..+..++.
T Consensus 169 i~~y~~~dg~L~~~~~~~-------v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~ 241 (346)
T COG2706 169 IFLYDLDDGKLTPADPAE-------VKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFT 241 (346)
T ss_pred EEEEEcccCccccccccc-------cCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccC
Confidence 899999865433322211 13456678999999999887765 5889999998763 22222322
Q ss_pred cCCCeEEEEEccCCCEEEEeeC-CCcEEEEeCCCC-cee---EEeecCCCcEEEEEEEeCCCEEEEEeCCC-cEEEEECC
Q 004214 421 HKRGIWSVEFSPVDQVVITASG-DKTIKIWSISDG-SCL---KTFEGHTSSVLRASFLTRGAQIVSCGADG-LVKLWTVR 494 (768)
Q Consensus 421 ~~~~v~~v~~s~~~~~l~t~~~-d~~i~iwd~~~~-~~~---~~~~~~~~~v~~~~~s~~~~~l~s~~~dg-~i~iwd~~ 494 (768)
-.....+|.++|+|++|.++.. ...|-+|.+... ..+ .....+........|++.|++|+++..++ .|.+|.+.
T Consensus 242 g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d 321 (346)
T COG2706 242 GTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERD 321 (346)
T ss_pred CCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEc
Confidence 1345678999999999998754 347888877543 222 22233444577889999999999988865 78888654
Q ss_pred --CCeEEEEec-cCCCcEEEEEE
Q 004214 495 --TGECIATYD-KHEDKIWALAV 514 (768)
Q Consensus 495 --~~~~~~~~~-~~~~~v~~l~~ 514 (768)
+|++-.... .......|+.|
T Consensus 322 ~~TG~L~~~~~~~~~p~Pvcv~f 344 (346)
T COG2706 322 KETGRLTLLGRYAVVPEPVCVKF 344 (346)
T ss_pred CCCceEEecccccCCCCcEEEEE
Confidence 555433322 22333445555
No 286
>PF04003 Utp12: Dip2/Utp12 Family; InterPro: IPR007148 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. This domain is found at the C terminus of proteins containing WD40 repeats. These proteins are part of the U3 ribonucleoprotein. In yeast, these proteins are called Utp5, Utp1 or Pwp2, Utp12 or DIP2 Q12220 from SWISSPROT. They interact with snoRNA U3 and with MPP10 []. Pwp2 is an essential Saccharomyces cerevisiae (Baker's yeast) protein involved in cell separation.
Probab=99.11 E-value=1.6e-10 Score=96.37 Aligned_cols=93 Identities=19% Similarity=0.229 Sum_probs=86.1
Q ss_pred hHHHHHHHHhhcCHHHHHHHHHHHHHHhc--CCCchHHHHHHHHHHhccCCcchhhcc-cChHhHHHhhccchHhHHHHH
Q 004214 596 AELQIEKALHALGKEEIRQLLEYVREWNT--KPKLCHVAQFVLFQLFNIHPPTEIIEI-KGISDVLEGLIPYTQRHFSRI 672 (768)
Q Consensus 596 ~~~~~~~~~~~l~~~~~~~ll~~l~~~~~--~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~~~~l~~l~~~~~~~~~~~ 672 (768)
+...|+.++..||+.++.+||+|+..|+. ++.+.+++..|+++|+..|+. ++... +++.+.|..|++.++++.+.+
T Consensus 14 ~~~~I~~tv~~Lp~~~~~~LL~~l~~~l~~~~~~~~e~~l~Wl~~ll~~H~~-~l~~~~~~~~~~L~~L~~~l~~~~~~l 92 (110)
T PF04003_consen 14 PPSDIENTVRSLPFSYAERLLQFLSERLQTRKSPHVEFLLRWLKALLKTHGS-YLSSSSPELRPVLRSLQKILRERLQNL 92 (110)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHH-HHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 44589999999999999999999999886 689999999999999999966 77777 899999999999999999999
Q ss_pred HHhHhhh-hhhheecccc
Q 004214 673 DRLVRST-FLLDYTLTGM 689 (768)
Q Consensus 673 ~~l~~~~-~~l~~~~~~~ 689 (768)
.++++.. |.|+|+..||
T Consensus 93 ~~l~~~n~~~L~~l~~q~ 110 (110)
T PF04003_consen 93 SKLLDLNLGRLDYLLSQI 110 (110)
T ss_pred HHHHHHhHHHHHHHHHhC
Confidence 9999999 9999998875
No 287
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.06 E-value=2.2e-09 Score=110.21 Aligned_cols=284 Identities=17% Similarity=0.272 Sum_probs=184.2
Q ss_pred eEEEEecCCCCEEEEEeCCCcEEEEECCC-ceeeeeeeCCcc--ceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCC---
Q 004214 243 LDLKFLGEEEQYLAVATNIEQVQVYDLSS-MSCSYVLAGHSE--IVLCLDTCALSSGKILIVTGSKDNSVRLWDSES--- 316 (768)
Q Consensus 243 ~~~~~~~~~~~~l~~~~~~~~i~i~d~~~-~~~~~~~~~~~~--~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~--- 316 (768)
..+..+| .+.-++.++.- .+.+.|+.. +...+.+. |.. .|-...|...+.... -++......-.+|++..
T Consensus 28 ~a~si~p-~grdi~lAsr~-gl~i~dld~p~~ppr~l~-h~tpw~vad~qws~h~a~~~-wiVsts~qkaiiwnlA~ss~ 103 (1081)
T KOG0309|consen 28 NAVSINP-SGRDIVLASRQ-GLYIIDLDDPFTPPRWLH-HITPWQVADVQWSPHPAKPY-WIVSTSNQKAIIWNLAKSSS 103 (1081)
T ss_pred cceeecc-ccchhhhhhhc-CeEEEeccCCCCCceeee-ccCcchhcceecccCCCCce-eEEecCcchhhhhhhhcCCc
Confidence 3334333 44455555553 345555543 23322222 211 122333333344444 34444455566888753
Q ss_pred ceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEE
Q 004214 317 RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVC 396 (768)
Q Consensus 317 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 396 (768)
...-..+.+|...|+.+.|+|..+.++++++.|..+..||++... .+......-......++|+-....+.
T Consensus 104 ~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~---------~p~ys~~~w~s~asqVkwnyk~p~vl 174 (1081)
T KOG0309|consen 104 NAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH---------RPFYSTSSWRSAASQVKWNYKDPNVL 174 (1081)
T ss_pred cceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCC---------cceeeeecccccCceeeecccCcchh
Confidence 344556779999999999999999999999999999999998642 23333333445567788887555555
Q ss_pred EEeCCCcEEEEeCCCC-ceEEEEeccCCCeEEEEEccC-CCEEEEeeCCCcEEEEeCCCCcee-EEeecCCCcEEEEEEE
Q 004214 397 TGSQDRTACVWRLPDL-VSVVTFRGHKRGIWSVEFSPV-DQVVITASGDKTIKIWSISDGSCL-KTFEGHTSSVLRASFL 473 (768)
Q Consensus 397 ~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~v~~s~~-~~~l~t~~~d~~i~iwd~~~~~~~-~~~~~~~~~v~~~~~s 473 (768)
+.+....|.+||++.+ .++..+++|...|..++|..- ...+.+.+.||+|+.||....... ........+|..-++.
T Consensus 175 asshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~ 254 (1081)
T KOG0309|consen 175 ASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYL 254 (1081)
T ss_pred hhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceecccc
Confidence 5577788999999865 678889999999999998763 356788899999999998654322 2222355677777787
Q ss_pred eCCCE--EEEEeCCCcEEE---------EECCC-CeEEEEeccCCCcEEEEEEcCCC----------CEEEEEeCCCcEE
Q 004214 474 TRGAQ--IVSCGADGLVKL---------WTVRT-GECIATYDKHEDKIWALAVGKKT----------EMFATGGSDALVN 531 (768)
Q Consensus 474 ~~~~~--l~s~~~dg~i~i---------wd~~~-~~~~~~~~~~~~~v~~l~~s~~~----------~~l~s~~~dg~v~ 531 (768)
|-|.- +.---.+..+.+ |++.+ .+++.+|.+|.+.|...-|-..+ -.|+|-+.|..++
T Consensus 255 Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lr 334 (1081)
T KOG0309|consen 255 PFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLR 334 (1081)
T ss_pred ccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceE
Confidence 76542 211111224444 33333 46899999999998776664322 2799999999999
Q ss_pred EEEcCCHH
Q 004214 532 LWHDSTAA 539 (768)
Q Consensus 532 vw~~~~~~ 539 (768)
+|-+...-
T Consensus 335 lWpI~~~i 342 (1081)
T KOG0309|consen 335 LWPIDSQI 342 (1081)
T ss_pred eeeccHHH
Confidence 99987653
No 288
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.06 E-value=7.2e-10 Score=109.76 Aligned_cols=247 Identities=15% Similarity=0.240 Sum_probs=174.6
Q ss_pred eeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCC-------ceEEEeeecccCcEEEEEEecCCCcEEEEEeC
Q 004214 276 YVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES-------RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSS 348 (768)
Q Consensus 276 ~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~ 348 (768)
..+.+|...|..+. ...+.+. ++++++|.+|++|.++. ..+..++..|..+|..+.|..+.+ ++ ++.
T Consensus 729 ~nf~GH~~~iRai~--AidNENS-FiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr-~i--~Sc 802 (1034)
T KOG4190|consen 729 CNFTGHQEKIRAIA--AIDNENS-FISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR-SI--ASC 802 (1034)
T ss_pred ecccCcHHHhHHHH--hcccccc-eeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc-ee--eec
Confidence 35678999998886 5555555 99999999999998753 446778889999999999998844 34 456
Q ss_pred CCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEE-eCCCcEEEEeCCCCceEEEEec-----cC
Q 004214 349 DHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTG-SQDRTACVWRLPDLVSVVTFRG-----HK 422 (768)
Q Consensus 349 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~-----~~ 422 (768)
||.|.+||.-.+..... .......+....|.++. +-+..++..| +...+|+++|.+.++-...++. ..
T Consensus 803 D~giHlWDPFigr~Laq-----~~dapk~~a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pn 876 (1034)
T KOG4190|consen 803 DGGIHLWDPFIGRLLAQ-----MEDAPKEGAGGNIKCLE-NVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPN 876 (1034)
T ss_pred cCcceeecccccchhHh-----hhcCcccCCCceeEecc-cCcchheeeeccchhhheeeecccccceeeEEeccCCCCc
Confidence 88999999653321110 00000111122233332 1134444444 7788999999999877666653 34
Q ss_pred CCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEE-EECCCCeEEEE
Q 004214 423 RGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKL-WTVRTGECIAT 501 (768)
Q Consensus 423 ~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~i-wd~~~~~~~~~ 501 (768)
.-+.+++..|.|+.++++-.+|.|.+.|.++|+.+..+.........++ .|..+.|+....|.++.+ |..-+|....+
T Consensus 877 a~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q 955 (1034)
T KOG4190|consen 877 ALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQ 955 (1034)
T ss_pred hheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeec
Confidence 5688999999999999999999999999999999998886666665554 356678888888999999 98888877776
Q ss_pred eccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 004214 502 YDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDST 537 (768)
Q Consensus 502 ~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~ 537 (768)
.+.+..+..-+ -.-|..|+++.....+.+|....
T Consensus 956 ~kpppepahfl--qsvgpSLV~a~~Gn~lgVYad~a 989 (1034)
T KOG4190|consen 956 DKPPPEPAHFL--QSVGPSLVTAQNGNILGVYADSA 989 (1034)
T ss_pred cCCCCcchhhh--hccCceeEEeccCcEEEEEecch
Confidence 66444433211 12466788888888889987553
No 289
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.04 E-value=2.1e-09 Score=110.42 Aligned_cols=233 Identities=18% Similarity=0.272 Sum_probs=155.0
Q ss_pred ceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCcee-eeeeeCCc
Q 004214 204 GLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSC-SYVLAGHS 282 (768)
Q Consensus 204 ~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~-~~~~~~~~ 282 (768)
.-++.+....-.+|.+....... +.-.+.||...|+++.|.+.....+++++-+..+..||+.+... +.....-.
T Consensus 83 ~wiVsts~qkaiiwnlA~ss~~a----Ief~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~ 158 (1081)
T KOG0309|consen 83 YWIVSTSNQKAIIWNLAKSSSNA----IEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWR 158 (1081)
T ss_pred eeEEecCcchhhhhhhhcCCccc----eEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeeccc
Confidence 33444455555566655443322 23346688999999999999999999999999999999987653 33444444
Q ss_pred cceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCc-eEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCC
Q 004214 283 EIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR-CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLS 361 (768)
Q Consensus 283 ~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 361 (768)
.....+. +.-.+.. +.+.+..+.|++||.+.| .++..+++|...|..+.|+.--...+.+.+.||+|++||.....
T Consensus 159 s~asqVk--wnyk~p~-vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt 235 (1081)
T KOG0309|consen 159 SAASQVK--WNYKDPN-VLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKST 235 (1081)
T ss_pred ccCceee--ecccCcc-hhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccc
Confidence 4455565 4445555 555666778999999864 57788899999999999987655578999999999999987543
Q ss_pred CCCccccccceeeEeeccCCCeEEEEEccCCC--EEEEEeCCCcEEE---------EeCCC-CceEEEEeccCCCeEEEE
Q 004214 362 DDAEQPMNLKAKAVVAAHGKDINSLAVAPNDS--LVCTGSQDRTACV---------WRLPD-LVSVVTFRGHKRGIWSVE 429 (768)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~--~l~~~~~dg~i~i---------~d~~~-~~~~~~~~~~~~~v~~v~ 429 (768)
..... ......+|.--.+-|-|. .+.---.+..+.+ |+..+ ..++..|.||...|...-
T Consensus 236 ~e~~~---------~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFl 306 (1081)
T KOG0309|consen 236 TESKR---------TVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFL 306 (1081)
T ss_pred cccce---------eccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHh
Confidence 22211 111223344444444222 1111111113333 33333 468899999999887666
Q ss_pred EccCC----------CEEEEeeCCCcEEEEeCC
Q 004214 430 FSPVD----------QVVITASGDKTIKIWSIS 452 (768)
Q Consensus 430 ~s~~~----------~~l~t~~~d~~i~iwd~~ 452 (768)
|-..+ -.|+|-+.|.++++|-+.
T Consensus 307 WR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~ 339 (1081)
T KOG0309|consen 307 WRKRKECDGDYDSRDFQLVTWSKDQTLRLWPID 339 (1081)
T ss_pred hhhcccccCCCCccceeEEEeecCCceEeeecc
Confidence 64422 269999999999999875
No 290
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.03 E-value=2.7e-09 Score=102.44 Aligned_cols=159 Identities=20% Similarity=0.260 Sum_probs=107.5
Q ss_pred EecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEe---CCCcEEEEeCCC
Q 004214 335 FSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGS---QDRTACVWRLPD 411 (768)
Q Consensus 335 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~---~dg~i~i~d~~~ 411 (768)
.++. ..+++++..+....++++..... ..+.. ....-....+++.+..+...+.++. ....+.+|....
T Consensus 70 ~s~~-~~llAv~~~~K~~~~f~~~~~~~------~~kl~-~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~ 141 (390)
T KOG3914|consen 70 TSDS-GRLVAVATSSKQRAVFDYRENPK------GAKLL-DVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADS 141 (390)
T ss_pred cCCC-ceEEEEEeCCCceEEEEEecCCC------cceee-eEeecccCcceeeeeeccceEEEEeecCCceeeeeecccc
Confidence 3444 33666666666666666654321 01111 1111222334455555444444444 344555565555
Q ss_pred CceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEee-cCCCcEEEEEEEeCCCEEEEEeCCCcEEE
Q 004214 412 LVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFE-GHTSSVLRASFLTRGAQIVSCGADGLVKL 490 (768)
Q Consensus 412 ~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~~dg~i~i 490 (768)
+.. ..+-||-..++.++|+||+++++++..|..|+|-....-..+..|. ||...|..++.-++. .|++||.|++|++
T Consensus 142 ~~~-~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~-~LlS~sGD~tlr~ 219 (390)
T KOG3914|consen 142 GRC-EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY-LLLSGSGDKTLRL 219 (390)
T ss_pred cCc-chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc-eeeecCCCCcEEE
Confidence 333 3456799999999999999999999999999998876666666554 799999999987654 5899999999999
Q ss_pred EECCCCeEEEEec
Q 004214 491 WTVRTGECIATYD 503 (768)
Q Consensus 491 wd~~~~~~~~~~~ 503 (768)
||+.+|+++.++.
T Consensus 220 Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 220 WDITSGKLLDTCD 232 (390)
T ss_pred EecccCCcccccc
Confidence 9999999887764
No 291
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.02 E-value=7.9e-07 Score=93.69 Aligned_cols=264 Identities=9% Similarity=0.033 Sum_probs=161.6
Q ss_pred CCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcE-
Q 004214 252 EQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAV- 330 (768)
Q Consensus 252 ~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v- 330 (768)
+..+++++.++.++.+|..+++.......... +.+- ..-.++. ++.++.+|.+..+|..+|+.+..........
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~-~~ss---P~v~~~~-v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~ 194 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGE-ALSR---PVVSDGL-VLVHTSNGMLQALNESDGAVKWTVNLDVPSLT 194 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCCc-eecC---CEEECCE-EEEECCCCEEEEEEccCCCEeeeecCCCCccc
Confidence 34667777889999999999988776654332 2211 1112344 6677889999999999999887765321111
Q ss_pred ----EEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccC-CCeEEEEEcc--CCCEEEEEeCCCc
Q 004214 331 ----GAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHG-KDINSLAVAP--NDSLVCTGSQDRT 403 (768)
Q Consensus 331 ----~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~s~--~~~~l~~~~~dg~ 403 (768)
.+-... + . .++.++.+|.+..+|..++...-........ ..+. .....+..+| .+..+++++.+|.
T Consensus 195 ~~~~~sP~v~-~-~-~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~----~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~ 267 (394)
T PRK11138 195 LRGESAPATA-F-G-GAIVGGDNGRVSAVLMEQGQLIWQQRISQPT----GATEIDRLVDVDTTPVVVGGVVYALAYNGN 267 (394)
T ss_pred ccCCCCCEEE-C-C-EEEEEcCCCEEEEEEccCChhhheeccccCC----CccchhcccccCCCcEEECCEEEEEEcCCe
Confidence 011111 1 2 4667778898988888765422111100000 0000 0001111222 3456777788999
Q ss_pred EEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCC-cEEEEEEEeCCCEEEEE
Q 004214 404 ACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTS-SVLRASFLTRGAQIVSC 482 (768)
Q Consensus 404 i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~s~ 482 (768)
+..+|..+++.+..... .....+.. .+..++.++.+|.+..+|..+|+.+.....-.. ....... .+.+|+.+
T Consensus 268 l~ald~~tG~~~W~~~~--~~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~ 341 (394)
T PRK11138 268 LVALDLRSGQIVWKREY--GSVNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVG 341 (394)
T ss_pred EEEEECCCCCEEEeecC--CCccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEE
Confidence 99999999987765432 11112222 366777888899999999999987655432111 1111222 25678889
Q ss_pred eCCCcEEEEECCCCeEEEEeccCCCcEEE-EEEcCCCCEEEEEeCCCcEEEEEc
Q 004214 483 GADGLVKLWTVRTGECIATYDKHEDKIWA-LAVGKKTEMFATGGSDALVNLWHD 535 (768)
Q Consensus 483 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~-l~~s~~~~~l~s~~~dg~v~vw~~ 535 (768)
+.+|.|.+.|..+|+.+...+.....+.+ ..+ .+..|+.++.||.|+.++.
T Consensus 342 ~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 342 DSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred eCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 99999999999999998887654443432 122 3557888999999888764
No 292
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.94 E-value=1.7e-06 Score=91.23 Aligned_cols=309 Identities=11% Similarity=0.021 Sum_probs=177.6
Q ss_pred EEeecCCCcEEEEECCCCEEEEEEEcCC--C--------cEE-EEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEec
Q 004214 3 ALLEGADRKVLVWDVDGGFCTHYFKGHK--G--------VVS-SILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLD 71 (768)
Q Consensus 3 latg~~dg~i~vwd~~~~~~~~~l~gh~--~--------~V~-~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~ 71 (768)
+.+++.+|.|.-+|..+|+.+-...-.. . .+. .++. ++.. ++.++.+|.+..+|..+|+.+.+..
T Consensus 72 vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~--v~v~~~~g~l~ald~~tG~~~W~~~ 147 (394)
T PRK11138 72 VYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGK--VYIGSEKGQVYALNAEDGEVAWQTK 147 (394)
T ss_pred EEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCE--EEEEcCCCEEEEEECCCCCCccccc
Confidence 4566778999999999999876654321 0 111 1222 2234 6778889999999999999987776
Q ss_pred CccceeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcce
Q 004214 72 KHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEI 151 (768)
Q Consensus 72 ~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (768)
.......+... .+..++.+..++.|..+|..+|+.+...+...+..... ..... . ....
T Consensus 148 ~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~--~~~sP--------------~---v~~~ 206 (394)
T PRK11138 148 VAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLR--GESAP--------------A---TAFG 206 (394)
T ss_pred CCCceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCccccc--CCCCC--------------E---EECC
Confidence 43321111122 24466777788999999999999888776432110000 00000 0 0012
Q ss_pred EEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEE
Q 004214 152 HFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELIL 231 (768)
Q Consensus 152 ~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~ 231 (768)
.++.++.+|.+..+|..+|......................+.. .....++.+++++.+|.+..++........
T Consensus 207 ~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~-sP~v~~~~vy~~~~~g~l~ald~~tG~~~W----- 280 (394)
T PRK11138 207 GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDT-TPVVVGGVVYALAYNGNLVALDLRSGQIVW----- 280 (394)
T ss_pred EEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCC-CcEEECCEEEEEEcCCeEEEEECCCCCEEE-----
Confidence 46667788999999998885543321110000000000000000 000125567777788888888876653211
Q ss_pred EeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccc-eEEEeeeeecCCCEEEEEEeCCCeEE
Q 004214 232 SKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEI-VLCLDTCALSSGKILIVTGSKDNSVR 310 (768)
Q Consensus 232 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~-v~~l~~~~~~~~~~~l~~~~~dg~i~ 310 (768)
...... ...+. ..+..+.+++.+|.+..+|..+++.+.....-... ..+. . -.++. ++.++.+|.+.
T Consensus 281 ~~~~~~----~~~~~---~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp---~-v~~g~-l~v~~~~G~l~ 348 (394)
T PRK11138 281 KREYGS----VNDFA---VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAP---V-LYNGY-LVVGDSEGYLH 348 (394)
T ss_pred eecCCC----ccCcE---EECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCC---E-EECCE-EEEEeCCCEEE
Confidence 111111 11111 13457777888899999999998776543221111 1111 1 12444 78889999999
Q ss_pred EEeCCCceEEEeeecccCcEEE-EEEecCCCcEEEEEeCCCeEEEEeC
Q 004214 311 LWDSESRCCVGVGTGHMGAVGA-VAFSKKLQNFLVSGSSDHTIKVWSF 357 (768)
Q Consensus 311 iwd~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~l~s~~~dg~i~iwd~ 357 (768)
++|..+|+.+.........+.+ ..+. + . .|+.++.||.+..++.
T Consensus 349 ~ld~~tG~~~~~~~~~~~~~~s~P~~~-~-~-~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 349 WINREDGRFVAQQKVDSSGFLSEPVVA-D-D-KLLIQARDGTVYAITR 393 (394)
T ss_pred EEECCCCCEEEEEEcCCCcceeCCEEE-C-C-EEEEEeCCceEEEEeC
Confidence 9999999988776644333332 2222 2 2 5888899999888764
No 293
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.93 E-value=9.6e-06 Score=86.09 Aligned_cols=211 Identities=17% Similarity=0.196 Sum_probs=138.7
Q ss_pred eecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCc-EEEEEEecCCCcEEEEEeCCC-----eEEEEeCCCCCCCCc
Q 004214 292 ALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGA-VGAVAFSKKLQNFLVSGSSDH-----TIKVWSFDGLSDDAE 365 (768)
Q Consensus 292 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~ 365 (768)
+.+.++. ++.|+.+|.|.+.+-. -+.+..++.+... |..+ +.-++.++|++.+.|+ .+++|++........
T Consensus 31 ~~s~~~~-vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L-~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 31 CSSSTGS-VVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFL-YILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred EcCCCce-EEEeeccccEEEeccc-ceeeehheecchhhhhHh-hcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 4466665 9999999999887643 3344666776666 4444 3444456888877765 489999986532221
Q ss_pred ccccc--ceeeE--eeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC----CCceEEEEeccCCCeEEEEEccCCCEE
Q 004214 366 QPMNL--KAKAV--VAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLP----DLVSVVTFRGHKRGIWSVEFSPVDQVV 437 (768)
Q Consensus 366 ~~~~~--~~~~~--~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~----~~~~~~~~~~~~~~v~~v~~s~~~~~l 437 (768)
|.-. ..... ......++.+++++.+-+.+|+|-.+|.|..+.-+ .+....-...-..+|+.+++..++..+
T Consensus 108 -P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~ 186 (933)
T KOG2114|consen 108 -PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSV 186 (933)
T ss_pred -cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCcee
Confidence 1111 01111 11235688999999999999999999999998532 112122222345799999999998873
Q ss_pred EEeeCCCcEEEEeCCCCce-eEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEec-cCCC
Q 004214 438 ITASGDKTIKIWSISDGSC-LKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD-KHED 507 (768)
Q Consensus 438 ~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~ 507 (768)
+-+..-..|.+|.+....+ ...+..|..++.|..|++....+++++. ..+.+|+.+.-.+-.++. +|..
T Consensus 187 lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~cfaf~~g~kk 257 (933)
T KOG2114|consen 187 LFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPCFAFEVGEKK 257 (933)
T ss_pred EEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecC-ceEEEEcCCCcceeeeecCCCeE
Confidence 3333447899999974442 4557788889999999887665666664 459999987655555555 4443
No 294
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.93 E-value=6.1e-07 Score=93.89 Aligned_cols=212 Identities=10% Similarity=-0.050 Sum_probs=128.7
Q ss_pred CeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeC---CCeEEEEeCCCCCCCCccccccceeeEeeccCCCe
Q 004214 307 NSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSS---DHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDI 383 (768)
Q Consensus 307 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i 383 (768)
..|.+-|...........+ +......|+|+|+..++..+. +..|.++|+.++. .. .+.......
T Consensus 169 ~~l~~~d~dg~~~~~~~~~--~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~----------~~-~lt~~~g~~ 235 (419)
T PRK04043 169 SNIVLADYTLTYQKVIVKG--GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGK----------KE-KIASSQGML 235 (419)
T ss_pred ceEEEECCCCCceeEEccC--CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCc----------EE-EEecCCCcE
Confidence 3555555554433322232 377889999998853443332 3568888886542 11 112234445
Q ss_pred EEEEEccCCCEEEEEe-CC--CcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeC-CC--cEEEEeCCCCcee
Q 004214 384 NSLAVAPNDSLVCTGS-QD--RTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASG-DK--TIKIWSISDGSCL 457 (768)
Q Consensus 384 ~~~~~s~~~~~l~~~~-~d--g~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~-d~--~i~iwd~~~~~~~ 457 (768)
....|+|||+.++... .+ ..|.++|+.++... .+..+........|+|||+.|+..+. .+ .|.++|+.+++..
T Consensus 236 ~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~ 314 (419)
T PRK04043 236 VVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVE 314 (419)
T ss_pred EeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeE
Confidence 6678999998776543 33 46888898777643 34434333445689999987776653 22 6888899877764
Q ss_pred EEeecCCCcEEEEEEEeCCCEEEEEeCC---------CcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCC-
Q 004214 458 KTFEGHTSSVLRASFLTRGAQIVSCGAD---------GLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSD- 527 (768)
Q Consensus 458 ~~~~~~~~~v~~~~~s~~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~d- 527 (768)
+.... ... ...|+|+|++|+..+.. ..|.+.|+.+++.. .+... .......|+|||+.++-...+
T Consensus 315 rlt~~-g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-~~~~~p~~SPDG~~I~f~~~~~ 389 (419)
T PRK04043 315 QVVFH-GKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN-GVNQFPRFSSDGGSIMFIKYLG 389 (419)
T ss_pred eCccC-CCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC-CCcCCeEECCCCCEEEEEEccC
Confidence 43321 111 24899999988766653 26788898888653 33322 223357899999988765543
Q ss_pred Cc--EEEEEcCC
Q 004214 528 AL--VNLWHDST 537 (768)
Q Consensus 528 g~--v~vw~~~~ 537 (768)
+. +.+.++..
T Consensus 390 ~~~~L~~~~l~g 401 (419)
T PRK04043 390 NQSALGIIRLNY 401 (419)
T ss_pred CcEEEEEEecCC
Confidence 33 44555443
No 295
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.92 E-value=1.2e-06 Score=91.58 Aligned_cols=213 Identities=8% Similarity=0.026 Sum_probs=127.6
Q ss_pred CcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEE-EeC--CCeEEEEeCCCceEEEeeecccCcEEEEEEecC
Q 004214 262 EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVT-GSK--DNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKK 338 (768)
Q Consensus 262 ~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~-~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~ 338 (768)
..|.+-|...........+ . ...... ++++++.+++. ... +..|.++|+.+++...... ..+......|+|+
T Consensus 169 ~~l~~~d~dg~~~~~~~~~-~-~~~~p~--wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPD 243 (419)
T PRK04043 169 SNIVLADYTLTYQKVIVKG-G-LNIFPK--WANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKD 243 (419)
T ss_pred ceEEEECCCCCceeEEccC-C-CeEeEE--ECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCC
Confidence 3555555544433323332 2 444444 77887753443 332 3579999998887655443 4555667889999
Q ss_pred CCcEEEEEeCCC--eEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCC-C--cEEEEeCCCCc
Q 004214 339 LQNFLVSGSSDH--TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQD-R--TACVWRLPDLV 413 (768)
Q Consensus 339 ~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g--~i~i~d~~~~~ 413 (768)
|+.++++.+.++ .|.++++..+. . ..+..+........|+|||+.|+..+.. + .|+++|+.+++
T Consensus 244 G~~la~~~~~~g~~~Iy~~dl~~g~----------~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~ 312 (419)
T PRK04043 244 GSKLLLTMAPKGQPDIYLYDTNTKT----------L-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGS 312 (419)
T ss_pred CCEEEEEEccCCCcEEEEEECCCCc----------E-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 987777766554 46666765431 1 1111122223345799999887776643 3 58888888776
Q ss_pred eEEEEeccCCCeEEEEEccCCCEEEEeeCC---------CcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeC
Q 004214 414 SVVTFRGHKRGIWSVEFSPVDQVVITASGD---------KTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGA 484 (768)
Q Consensus 414 ~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d---------~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 484 (768)
....... .. ....|+|+|+.|+..+.. ..|.+.|+.++.. +.+... .......|+|||+.++....
T Consensus 313 ~~rlt~~-g~--~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~-~~~~~p~~SPDG~~I~f~~~ 387 (419)
T PRK04043 313 VEQVVFH-GK--NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTAN-GVNQFPRFSSDGGSIMFIKY 387 (419)
T ss_pred eEeCccC-CC--cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCC-CCcCCeEECCCCCEEEEEEc
Confidence 6433221 11 124899999988776643 3688889887764 334322 23335889999998876654
Q ss_pred CC---cEEEEECCC
Q 004214 485 DG---LVKLWTVRT 495 (768)
Q Consensus 485 dg---~i~iwd~~~ 495 (768)
++ .+.+.++..
T Consensus 388 ~~~~~~L~~~~l~g 401 (419)
T PRK04043 388 LGNQSALGIIRLNY 401 (419)
T ss_pred cCCcEEEEEEecCC
Confidence 33 355666643
No 296
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.91 E-value=6.4e-08 Score=89.50 Aligned_cols=248 Identities=22% Similarity=0.317 Sum_probs=163.5
Q ss_pred ccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCce-----EEEeeecccC------------cEEEEEEec-CCCcEE
Q 004214 282 SEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC-----CVGVGTGHMG------------AVGAVAFSK-KLQNFL 343 (768)
Q Consensus 282 ~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~~~~------------~v~~~~~~~-~~~~~l 343 (768)
...|+++. +...|. ++++|...|.|.+|.-.... ....+++|.. .|..+.|.. .+...+
T Consensus 26 ad~ItaVe--fd~tg~-YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hF 102 (460)
T COG5170 26 ADKITAVE--FDETGL-YLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHF 102 (460)
T ss_pred cceeeEEE--eccccc-eEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceE
Confidence 34566665 445555 49999999999999754322 2233555542 466677754 445678
Q ss_pred EEEeCCCeEEEEeCCCCCCC----------Ccccc----------------------ccceee-EeeccCCCeEEEEEcc
Q 004214 344 VSGSSDHTIKVWSFDGLSDD----------AEQPM----------------------NLKAKA-VVAAHGKDINSLAVAP 390 (768)
Q Consensus 344 ~s~~~dg~i~iwd~~~~~~~----------~~~~~----------------------~~~~~~-~~~~~~~~i~~~~~s~ 390 (768)
+..+.|.+|++|.+...... ...+. ...+.+ ....|.-.|+++.++.
T Consensus 103 LlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns 182 (460)
T COG5170 103 LLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS 182 (460)
T ss_pred EEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecC
Confidence 88889999999987643100 00000 011111 2256788899999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCc---eEEEEeccC-----CCeEEEEEccCC-CEEEEeeCCCcEEEEeCCCCcee----
Q 004214 391 NDSLVCTGSQDRTACVWRLPDLV---SVVTFRGHK-----RGIWSVEFSPVD-QVVITASGDKTIKIWSISDGSCL---- 457 (768)
Q Consensus 391 ~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~-----~~v~~v~~s~~~-~~l~t~~~d~~i~iwd~~~~~~~---- 457 (768)
|...++++ .|-.|.+|++.-.. .+..++.|. .-|++..|+|.. +.+.-.+..|.|++-|++...+.
T Consensus 183 D~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~ 261 (460)
T COG5170 183 DKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSK 261 (460)
T ss_pred chheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCch
Confidence 98888775 46789999986432 233344443 357889999963 55556667799999999843211
Q ss_pred ------------EEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCC-eEEEEeccCC------------CcE---
Q 004214 458 ------------KTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTG-ECIATYDKHE------------DKI--- 509 (768)
Q Consensus 458 ------------~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~------------~~v--- 509 (768)
.-|.+-...|..+.|+++|+++++-+. -+|+|||+... .++.++.-|. +.|
T Consensus 262 klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdk 340 (460)
T COG5170 262 KLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDK 340 (460)
T ss_pred hhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeee
Confidence 112233467889999999999988654 57999999754 5777775443 233
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEE
Q 004214 510 WALAVGKKTEMFATGGSDALVNLWH 534 (768)
Q Consensus 510 ~~l~~s~~~~~l~s~~~dg~v~vw~ 534 (768)
..+.||.|...+.+|+.....-++-
T Consensus 341 FeisfSgd~~~v~sgsy~NNfgiyp 365 (460)
T COG5170 341 FEISFSGDDKHVLSGSYSNNFGIYP 365 (460)
T ss_pred EEEEecCCcccccccccccceeeec
Confidence 3478899999999999887777765
No 297
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=2e-07 Score=89.63 Aligned_cols=261 Identities=11% Similarity=0.104 Sum_probs=160.7
Q ss_pred EEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEE
Q 004214 264 VQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFL 343 (768)
Q Consensus 264 i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 343 (768)
+++.+..+.+....+.++...|..++ +++...-++..++.+..|.|.|+++...+..+..+ ..+++++|.-+..+++
T Consensus 175 v~~l~~~~fkssq~lp~~g~~Irdla--fSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~I 251 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLA--FSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVI 251 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhc--cCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCccee
Confidence 77777777777778899999999998 66766667899999999999999999999988888 8899999999999999
Q ss_pred EEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEE------EEccCCCEEEEEeCCCcEEEEeCC--CCceE
Q 004214 344 VSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSL------AVAPNDSLVCTGSQDRTACVWRLP--DLVSV 415 (768)
Q Consensus 344 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~------~~s~~~~~l~~~~~dg~i~i~d~~--~~~~~ 415 (768)
.+|-.+|.|.+||++........... .....+|..+ ...+.|.+++....+ +..|+.. .+...
T Consensus 252 YaGl~nG~VlvyD~R~~~~~~~e~~a-------~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p 322 (463)
T KOG1645|consen 252 YAGLQNGMVLVYDMRQPEGPLMELVA-------NVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLP 322 (463)
T ss_pred EEeccCceEEEEEccCCCchHhhhhh-------hhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCC
Confidence 99999999999999865321110000 0011222222 333445566555543 4556543 12222
Q ss_pred EEEe-ccCCCeEEEEEccCCCEEEEeeCC-C------cEEE-EeCCCCceeEEee-cCCCc----E--EE-EEEEeCCCE
Q 004214 416 VTFR-GHKRGIWSVEFSPVDQVVITASGD-K------TIKI-WSISDGSCLKTFE-GHTSS----V--LR-ASFLTRGAQ 478 (768)
Q Consensus 416 ~~~~-~~~~~v~~v~~s~~~~~l~t~~~d-~------~i~i-wd~~~~~~~~~~~-~~~~~----v--~~-~~~s~~~~~ 478 (768)
.++. +..+...++.+.+..+.++..... . .|-. -|-.+|.++...+ ++.+. + +. +.-.++.++
T Consensus 323 ~vlele~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~ 402 (463)
T KOG1645|consen 323 CVLELEPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNY 402 (463)
T ss_pred cccccCCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccE
Confidence 2222 124556666666654444433221 1 1111 1222333332211 12110 0 01 112345566
Q ss_pred EEE-EeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcC-CCCEEEEEeCCCcEEEEEcCC
Q 004214 479 IVS-CGADGLVKLWTVRTGECIATYDKHEDKIWALAVGK-KTEMFATGGSDALVNLWHDST 537 (768)
Q Consensus 479 l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~-~~~~l~s~~~dg~v~vw~~~~ 537 (768)
++. ++..+.+.+||+.+++.++++. ...+|..++... ++.-++..-.|..++|++-++
T Consensus 403 iv~~gd~tn~lil~D~~s~evvQ~l~-~~epv~Dicp~~~n~~syLa~LTd~~v~Iyk~es 462 (463)
T KOG1645|consen 403 IVVVGDSTNELILQDPHSFEVVQTLA-LSEPVLDICPNDTNGSSYLALLTDDRVHIYKNES 462 (463)
T ss_pred EEEecCCcceeEEeccchhheeeecc-cCcceeecceeecCCcchhhheecceEEEEecCC
Confidence 654 4445689999999999999997 557888776543 344344444566788887553
No 298
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.89 E-value=1.5e-08 Score=97.51 Aligned_cols=156 Identities=15% Similarity=0.240 Sum_probs=113.2
Q ss_pred eEEEEEccCCCEEEEEeCCCcEEEEeCCCCce----EEEEeccCCCeEEEEEccCCCEEEE---eeCCCcEEEEeCCCCc
Q 004214 383 INSLAVAPNDSLVCTGSQDRTACVWRLPDLVS----VVTFRGHKRGIWSVEFSPVDQVVIT---ASGDKTIKIWSISDGS 455 (768)
Q Consensus 383 i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~v~~v~~s~~~~~l~t---~~~d~~i~iwd~~~~~ 455 (768)
...+..+|.++++|++..+....++++..... ..... -...-+++.|..+...... ++....+.+|....+.
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~ 143 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR 143 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence 34556788999999999998888887754432 22222 2223344444444444333 4455566667666544
Q ss_pred eeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEec-cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004214 456 CLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD-KHEDKIWALAVGKKTEMFATGGSDALVNLWH 534 (768)
Q Consensus 456 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~ 534 (768)
+ ..+-||-..++.++|+||+++++++..|+.|+|-.....-.+..+. +|..-|..++.-++ ..|++||.|++|++|+
T Consensus 144 ~-~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd 221 (390)
T KOG3914|consen 144 C-EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWD 221 (390)
T ss_pred c-chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEEe
Confidence 4 4445799999999999999999999999999998877766666654 69999999998754 4599999999999999
Q ss_pred cCCHHHH
Q 004214 535 DSTAAER 541 (768)
Q Consensus 535 ~~~~~~~ 541 (768)
+.+++..
T Consensus 222 ~~sgk~L 228 (390)
T KOG3914|consen 222 ITSGKLL 228 (390)
T ss_pred cccCCcc
Confidence 9987654
No 299
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.88 E-value=7.6e-06 Score=80.07 Aligned_cols=216 Identities=14% Similarity=0.043 Sum_probs=141.6
Q ss_pred eecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEe-cCCCcEEEEEeCCCeEEEEeCCCCCCCCcccccc
Q 004214 292 ALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFS-KKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNL 370 (768)
Q Consensus 292 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 370 (768)
+.+.++.++++....+.|+.|+..++....... .. ...+++. ++ . .++.+...+ +.++|...+ ..
T Consensus 7 ~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~-~~--~~G~~~~~~~-g-~l~v~~~~~-~~~~d~~~g--------~~ 72 (246)
T PF08450_consen 7 WDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDL-PG--PNGMAFDRPD-G-RLYVADSGG-IAVVDPDTG--------KV 72 (246)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTTTEEEEEES-SS--EEEEEEECTT-S-EEEEEETTC-EEEEETTTT--------EE
T ss_pred EECCCCEEEEEEcCCCEEEEEECCCCeEEEEec-CC--CceEEEEccC-C-EEEEEEcCc-eEEEecCCC--------cE
Confidence 555566667777788999999999886654222 22 6677777 55 4 355555544 455587643 11
Q ss_pred ceeeEee--c-cCCCeEEEEEccCCCEEEEEeCC--------CcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEE-
Q 004214 371 KAKAVVA--A-HGKDINSLAVAPNDSLVCTGSQD--------RTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVI- 438 (768)
Q Consensus 371 ~~~~~~~--~-~~~~i~~~~~s~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~- 438 (768)
....... . .....+.++++|+|++.++.... |.|..++.. ++...... .-...+.++|+|+++.|+
T Consensus 73 ~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv 150 (246)
T PF08450_consen 73 TVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYV 150 (246)
T ss_dssp EEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEE
T ss_pred EEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheee
Confidence 1111111 1 34567899999999987776644 457777776 44433333 355678999999998765
Q ss_pred EeeCCCcEEEEeCCCCce----eE---EeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEE
Q 004214 439 TASGDKTIKIWSISDGSC----LK---TFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWA 511 (768)
Q Consensus 439 t~~~d~~i~iwd~~~~~~----~~---~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 511 (768)
+-+..+.|..|++..... .. .+....+..-.+++..+|+..++....+.|.+++.. |+.+..+......+++
T Consensus 151 ~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~ 229 (246)
T PF08450_consen 151 ADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTN 229 (246)
T ss_dssp EETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEE
T ss_pred cccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEE
Confidence 556778899999853221 12 222222347789999999988887788999999987 9999988877678999
Q ss_pred EEEc-CCCCEEEEE
Q 004214 512 LAVG-KKTEMFATG 524 (768)
Q Consensus 512 l~~s-~~~~~l~s~ 524 (768)
++|. ++...|...
T Consensus 230 ~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 230 CAFGGPDGKTLYVT 243 (246)
T ss_dssp EEEESTTSSEEEEE
T ss_pred EEEECCCCCEEEEE
Confidence 9994 665555443
No 300
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.86 E-value=6.4e-09 Score=97.55 Aligned_cols=160 Identities=18% Similarity=0.254 Sum_probs=123.5
Q ss_pred EEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC-----ceEEE
Q 004214 343 LVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDL-----VSVVT 417 (768)
Q Consensus 343 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~-----~~~~~ 417 (768)
-++.+.+-.|-+-++.++- ... ....++|.++.|...++++..|+.+|.|..+|++.. .+...
T Consensus 227 hfs~G~sqqv~L~nvetg~-----------~qs-f~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~r 294 (425)
T KOG2695|consen 227 HFSVGLSQQVLLTNVETGH-----------QQS-FQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQR 294 (425)
T ss_pred eecccccceeEEEEeeccc-----------ccc-cccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEE
Confidence 3556666677777876542 111 124578889999999999999999999999999864 34444
Q ss_pred EeccCCCeEEEEEcc-CCCEEEEeeCCCcEEEEeCCCCce---eEEeecCCCcEEEEEE--EeCCCEEEEEeCCCcEEEE
Q 004214 418 FRGHKRGIWSVEFSP-VDQVVITASGDKTIKIWSISDGSC---LKTFEGHTSSVLRASF--LTRGAQIVSCGADGLVKLW 491 (768)
Q Consensus 418 ~~~~~~~v~~v~~s~-~~~~l~t~~~d~~i~iwd~~~~~~---~~~~~~~~~~v~~~~~--s~~~~~l~s~~~dg~i~iw 491 (768)
+. |...|+++..-. ++++|.+.+.+|+|++||++.-++ +.+++||...-..+-+ .+....+++++.|...+||
T Consensus 295 ly-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiW 373 (425)
T KOG2695|consen 295 LY-HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIW 373 (425)
T ss_pred EE-cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEE
Confidence 54 899999988776 789999999999999999988777 9999999775544444 4556688999999999999
Q ss_pred ECCCCeEEEEeccC----CCcEEEEEEc
Q 004214 492 TVRTGECIATYDKH----EDKIWALAVG 515 (768)
Q Consensus 492 d~~~~~~~~~~~~~----~~~v~~l~~s 515 (768)
.+++|..+.++.-. +..+++++|.
T Consensus 374 sl~~ghLl~tipf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 374 SLDSGHLLCTIPFPYSASEVDIPSVAFD 401 (425)
T ss_pred ecccCceeeccCCCCccccccccceehh
Confidence 99999999888632 2345666664
No 301
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.86 E-value=1.1e-07 Score=87.92 Aligned_cols=243 Identities=17% Similarity=0.277 Sum_probs=159.9
Q ss_pred CceeEEEEecCCCCEEEEEeCCCcEEEEECCCce-e----eeeeeCCc------------cceEEEeeeeecCCCEEEEE
Q 004214 240 EEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMS-C----SYVLAGHS------------EIVLCLDTCALSSGKILIVT 302 (768)
Q Consensus 240 ~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~-~----~~~~~~~~------------~~v~~l~~~~~~~~~~~l~~ 302 (768)
+.|+.+.|. ..+.++++|...|.|.+|.-.... | ...+++|. ..|..+.|+- +.+...++.
T Consensus 27 d~ItaVefd-~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~-~t~r~hFLl 104 (460)
T COG5170 27 DKITAVEFD-ETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFD-DTGRNHFLL 104 (460)
T ss_pred ceeeEEEec-cccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeec-CCCcceEEE
Confidence 356666664 467899999999999999866433 1 12245543 2355666433 333344777
Q ss_pred EeCCCeEEEEeCCCce------------------------------------------EEEee-ecccCcEEEEEEecCC
Q 004214 303 GSKDNSVRLWDSESRC------------------------------------------CVGVG-TGHMGAVGAVAFSKKL 339 (768)
Q Consensus 303 ~~~dg~i~iwd~~~~~------------------------------------------~~~~~-~~~~~~v~~~~~~~~~ 339 (768)
.+.|.+|++|.+.... +.+.+ ..|.-.+.++.++.+.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 7889999999754220 00111 3577778899998885
Q ss_pred CcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeecc-----CCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCc
Q 004214 340 QNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAH-----GKDINSLAVAP-NDSLVCTGSQDRTACVWRLPDLV 413 (768)
Q Consensus 340 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-----~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~ 413 (768)
. .++ .+.|-.|.+|++.-..... ...-..+| ..-|++..|+| ....+...+..|.|++-|++...
T Consensus 185 e-t~l-SaDdLrINLWnl~i~D~sF-------nIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~a 255 (460)
T COG5170 185 E-TLL-SADDLRINLWNLEIIDGSF-------NIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSA 255 (460)
T ss_pred h-eee-eccceeeeeccccccCCce-------EEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhh
Confidence 5 344 4567789999987442211 01111112 24578889999 45667777888999999997432
Q ss_pred eE----------------EEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCC-ceeEEeecCC------------
Q 004214 414 SV----------------VTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG-SCLKTFEGHT------------ 464 (768)
Q Consensus 414 ~~----------------~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~-~~~~~~~~~~------------ 464 (768)
.. .-+.+-...|..+.|+++|+++++-+. -+|+|||++.. .|+.++.-|.
T Consensus 256 lcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEn 334 (460)
T COG5170 256 LCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYEN 334 (460)
T ss_pred hccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhc
Confidence 11 111123457889999999999998876 78999998754 5777775443
Q ss_pred CcE---EEEEEEeCCCEEEEEeCCCcEEEEECC
Q 004214 465 SSV---LRASFLTRGAQIVSCGADGLVKLWTVR 494 (768)
Q Consensus 465 ~~v---~~~~~s~~~~~l~s~~~dg~i~iwd~~ 494 (768)
..| ..+.||.|.+.+++|+.....-+|-+.
T Consensus 335 DaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 335 DAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTD 367 (460)
T ss_pred cceeeeEEEEecCCcccccccccccceeeeccc
Confidence 222 457888899999999988888887643
No 302
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.86 E-value=1.3e-05 Score=78.49 Aligned_cols=219 Identities=11% Similarity=0.033 Sum_probs=142.2
Q ss_pred EEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEee
Q 004214 244 DLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVG 323 (768)
Q Consensus 244 ~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 323 (768)
+..|.+.++.++++-...+.|..|+..++.... +.... ...+. +..+++. ++.+... .+.++|..+++.....
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~--~~~~~g~-l~v~~~~-~~~~~d~~~g~~~~~~ 76 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMA--FDRPDGR-LYVADSG-GIAVVDPDTGKVTVLA 76 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEE--EECTTSE-EEEEETT-CEEEEETTTTEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEE--EEccCCE-EEEEEcC-ceEEEecCCCcEEEEe
Confidence 345665577777777788999999998887653 22222 33443 4434565 5555554 4556699988665544
Q ss_pred ec-----ccCcEEEEEEecCCCcEEEEEeCC--------CeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEcc
Q 004214 324 TG-----HMGAVGAVAFSKKLQNFLVSGSSD--------HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP 390 (768)
Q Consensus 324 ~~-----~~~~v~~~~~~~~~~~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 390 (768)
.. .......+++.|+|. +.++.... |.|..++.. + ........-...+.++|+|
T Consensus 77 ~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~-----------~~~~~~~~~~~pNGi~~s~ 143 (246)
T PF08450_consen 77 DLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-G-----------KVTVVADGLGFPNGIAFSP 143 (246)
T ss_dssp EEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-S-----------EEEEEEEEESSEEEEEEET
T ss_pred eccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-C-----------eEEEEecCcccccceEECC
Confidence 43 345678899999977 55555443 445556554 1 1222223345678999999
Q ss_pred CCCEEE-EEeCCCcEEEEeCCCCce----EEEE---eccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeec
Q 004214 391 NDSLVC-TGSQDRTACVWRLPDLVS----VVTF---RGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEG 462 (768)
Q Consensus 391 ~~~~l~-~~~~dg~i~i~d~~~~~~----~~~~---~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~ 462 (768)
+++.|+ +-+..+.|..|++..... ...+ ....+..-.+++.++|++.++....+.|.++|.. |+.+..+..
T Consensus 144 dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~ 222 (246)
T PF08450_consen 144 DGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIEL 222 (246)
T ss_dssp TSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-
T ss_pred cchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcC
Confidence 998765 556678899998853221 1222 2222247789999999998888888999999986 999988887
Q ss_pred CCCcEEEEEEE-eCCCEEEEEe
Q 004214 463 HTSSVLRASFL-TRGAQIVSCG 483 (768)
Q Consensus 463 ~~~~v~~~~~s-~~~~~l~s~~ 483 (768)
....+++++|. ++.+.|+..+
T Consensus 223 p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 223 PVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp SSSSEEEEEEESTTSSEEEEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEe
Confidence 76789999995 5666665443
No 303
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.86 E-value=3.9e-06 Score=81.94 Aligned_cols=219 Identities=12% Similarity=0.028 Sum_probs=140.5
Q ss_pred CCcEEEEECCCceeeeeeeCC--ccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecC
Q 004214 261 IEQVQVYDLSSMSCSYVLAGH--SEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKK 338 (768)
Q Consensus 261 ~~~i~i~d~~~~~~~~~~~~~--~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~ 338 (768)
+|.|..||..+++.+...... .....+. ....++. +++++.++.+..||..+|+.+............. ...+
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~---~~~~~~~-v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~~ 76 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT---AVPDGGR-VYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP-VVDG 76 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEET---EEEETTE-EEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE-EEET
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccce---EEEeCCE-EEEEcCCCEEEEEECCCCCEEEEeecccccccee-eecc
Confidence 588999999999988877541 1222211 2234555 7777899999999999999887766422111112 2222
Q ss_pred CCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeE-eeccC---CCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCce
Q 004214 339 LQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAV-VAAHG---KDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVS 414 (768)
Q Consensus 339 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~---~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~ 414 (768)
. .++.++.++.+..+|...+.. ... ..... ...........+..++++..++.|..+|+.+|+.
T Consensus 77 -~-~v~v~~~~~~l~~~d~~tG~~----------~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~ 144 (238)
T PF13360_consen 77 -G-RVYVGTSDGSLYALDAKTGKV----------LWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKL 144 (238)
T ss_dssp -T-EEEEEETTSEEEEEETTTSCE----------EEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEE
T ss_pred -c-ccccccceeeeEecccCCcce----------eeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcE
Confidence 2 467777888999999776532 222 11110 1112223333478888888899999999999999
Q ss_pred EEEEeccCCC----------eEEEEEccCCCEEEEeeCCCc-EEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEe
Q 004214 415 VVTFRGHKRG----------IWSVEFSPVDQVVITASGDKT-IKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCG 483 (768)
Q Consensus 415 ~~~~~~~~~~----------v~~v~~s~~~~~l~t~~~d~~-i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 483 (768)
+......... +..-....++ .++.++.++. +.+ |+.+++.+.... ...+.. ....++..|+.++
T Consensus 145 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~--~~~~~~-~~~~~~~~l~~~~ 219 (238)
T PF13360_consen 145 LWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLWSKP--ISGIYS-LPSVDGGTLYVTS 219 (238)
T ss_dssp EEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEEEEC--SS-ECE-CEECCCTEEEEEE
T ss_pred EEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEEEec--CCCccC-CceeeCCEEEEEe
Confidence 8888764422 1122222344 6666777775 555 999998664333 222222 2457788888888
Q ss_pred CCCcEEEEECCCCeEEEE
Q 004214 484 ADGLVKLWTVRTGECIAT 501 (768)
Q Consensus 484 ~dg~i~iwd~~~~~~~~~ 501 (768)
.++.|..||+++|+.+.+
T Consensus 220 ~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 220 SDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp TTTEEEEEETTTTEEEEE
T ss_pred CCCEEEEEECCCCCEEeE
Confidence 999999999999998754
No 304
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=8.8e-08 Score=93.25 Aligned_cols=281 Identities=17% Similarity=0.119 Sum_probs=188.7
Q ss_pred cCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCc---eeeeeeeCCccceEEEeeeeecCCCEEEEEEeC-CCeEEEEe
Q 004214 238 YNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSM---SCSYVLAGHSEIVLCLDTCALSSGKILIVTGSK-DNSVRLWD 313 (768)
Q Consensus 238 ~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~---~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~-dg~i~iwd 313 (768)
|.+.|+.+.. .-.+++..++-||.++.|--..- +.+..+..|...+.+++ .+-++.++.+++. |..++++|
T Consensus 8 hrd~i~hv~~--tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~---~S~dg~L~~Sv~d~Dhs~KvfD 82 (558)
T KOG0882|consen 8 HRDVITHVFP--TKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLA---VSYDGWLFRSVEDPDHSVKVFD 82 (558)
T ss_pred ccceeeeEee--ehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhh---ccccceeEeeccCcccceeEEE
Confidence 3444444443 35568999999999999986542 33444567888888874 4445566888777 99999999
Q ss_pred CCCceEEEeeec--ccCcEEEEEEecCCC--cEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEc
Q 004214 314 SESRCCVGVGTG--HMGAVGAVAFSKKLQ--NFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVA 389 (768)
Q Consensus 314 ~~~~~~~~~~~~--~~~~v~~~~~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 389 (768)
+.+-..+..++. -.+.+..+ .+|... .+.++.-.+|.+.++|-.... ........-|..+|..+.+.
T Consensus 83 vEn~DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~--------~q~~~fkklH~sPV~~i~y~ 153 (558)
T KOG0882|consen 83 VENFDMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDF--------CQDGYFKKLHFSPVKKIRYN 153 (558)
T ss_pred eeccchhhhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCc--------CccceecccccCceEEEEee
Confidence 887554432221 11222111 122111 233344567889999866432 12334445688999999999
Q ss_pred cCCCEEEEEeCCCcEEEEeCCC------CceEE---------EEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCC
Q 004214 390 PNDSLVCTGSQDRTACVWRLPD------LVSVV---------TFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG 454 (768)
Q Consensus 390 ~~~~~l~~~~~dg~i~i~d~~~------~~~~~---------~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~ 454 (768)
|.+..+++....|.|.-|..+. .+... .+.......+++.|+|++..+.+-+.|..|++++..+|
T Consensus 154 qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtG 233 (558)
T KOG0882|consen 154 QAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTG 233 (558)
T ss_pred ccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccc
Confidence 9999999999999999998862 11111 11223456789999999999999999999999999998
Q ss_pred ceeEEee--------------------------------cCC-CcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEE
Q 004214 455 SCLKTFE--------------------------------GHT-SSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIAT 501 (768)
Q Consensus 455 ~~~~~~~--------------------------------~~~-~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 501 (768)
+.++.+. .|. ..-+.+.|...|++|+-|+-=| |++.++.++++++.
T Consensus 234 klvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri 312 (558)
T KOG0882|consen 234 KLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRI 312 (558)
T ss_pred hhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEE
Confidence 8766543 121 2335678888999999988776 89999999998877
Q ss_pred eccCCC------------------cE-------EEEEEcCCCCEEEEEeCCCcEEEE
Q 004214 502 YDKHED------------------KI-------WALAVGKKTEMFATGGSDALVNLW 533 (768)
Q Consensus 502 ~~~~~~------------------~v-------~~l~~s~~~~~l~s~~~dg~v~vw 533 (768)
+-.... .+ ..+.+.+|...++++-.-..++++
T Consensus 313 ~gk~e~ir~~~~sl~q~~~k~~~~~~~~~a~~np~~~~~~dpt~~c~a~kk~rfylf 369 (558)
T KOG0882|consen 313 LGKDEAIRFTRLSLYQGAQKSNLAALEVAASNNPLLEFQKDPTIVCTAFKKNRFYLF 369 (558)
T ss_pred eccchhhhhhhHHHHhhhhhccchhhhhhhccCcccccCCCCeEEEeeeecceEEEE
Confidence 632110 00 112355666677777777777777
No 305
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.81 E-value=3.1e-06 Score=82.69 Aligned_cols=216 Identities=12% Similarity=0.028 Sum_probs=138.3
Q ss_pred CCeEEEEeCCCceEEEeeecc--cCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCe
Q 004214 306 DNSVRLWDSESRCCVGVGTGH--MGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDI 383 (768)
Q Consensus 306 dg~i~iwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i 383 (768)
+|.|..||..+++.+.....- .....+..+. ++. .+++++.++.+..||...+. ....... ...+
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~-~~~-~v~~~~~~~~l~~~d~~tG~----------~~W~~~~-~~~~ 68 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVP-DGG-RVYVASGDGNLYALDAKTGK----------VLWRFDL-PGPI 68 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEE-ETT-EEEEEETTSEEEEEETTTSE----------EEEEEEC-SSCG
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEE-eCC-EEEEEcCCCEEEEEECCCCC----------EEEEeec-cccc
Confidence 688999999999988877531 1222222222 223 57777899999999987552 2222221 1111
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEE-eccCC---CeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEE
Q 004214 384 NSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTF-RGHKR---GIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKT 459 (768)
Q Consensus 384 ~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~---~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~ 459 (768)
.... ...+..+++++.++.+..+|..+++.+... ..... ..........+..++++..++.|..+|+++|+.+..
T Consensus 69 ~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~ 147 (238)
T PF13360_consen 69 SGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWK 147 (238)
T ss_dssp GSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEE
T ss_pred ccee-eecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEE
Confidence 1111 224556677778889999999999998884 43211 112223333478888888899999999999999888
Q ss_pred eecCCCc----------EEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCc
Q 004214 460 FEGHTSS----------VLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDAL 529 (768)
Q Consensus 460 ~~~~~~~----------v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~ 529 (768)
....... +..-....++ .++.++.+|.+.-+|+.+++.+.... ...+..+ ..+++..|+.++.++.
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~--~~~~~~~-~~~~~~~l~~~~~~~~ 223 (238)
T PF13360_consen 148 YPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP--ISGIYSL-PSVDGGTLYVTSSDGR 223 (238)
T ss_dssp EESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC--SS-ECEC-EECCCTEEEEEETTTE
T ss_pred eecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec--CCCccCC-ceeeCCEEEEEeCCCE
Confidence 8764422 1122222344 77777778854444999999775433 2333332 4567788888889999
Q ss_pred EEEEEcCCHH
Q 004214 530 VNLWHDSTAA 539 (768)
Q Consensus 530 v~vw~~~~~~ 539 (768)
|..||+.+++
T Consensus 224 l~~~d~~tG~ 233 (238)
T PF13360_consen 224 LYALDLKTGK 233 (238)
T ss_dssp EEEEETTTTE
T ss_pred EEEEECCCCC
Confidence 9999999875
No 306
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=9.6e-08 Score=92.98 Aligned_cols=214 Identities=17% Similarity=0.096 Sum_probs=151.8
Q ss_pred cccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeC-CCc
Q 004214 325 GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ-DRT 403 (768)
Q Consensus 325 ~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~ 403 (768)
.|...|+.+..+.. .++.+++.||.+++|.-.... -......+..|...|.+++.+-++.++++.+. |..
T Consensus 7 mhrd~i~hv~~tka--~fiiqASlDGh~KFWkKs~is-------GvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs 77 (558)
T KOG0882|consen 7 MHRDVITHVFPTKA--KFIIQASLDGHKKFWKKSRIS-------GVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHS 77 (558)
T ss_pred cccceeeeEeeehh--heEEeeecchhhhhcCCCCcc-------ceeehhhhHHHHHHHHhhhccccceeEeeccCcccc
Confidence 47777877776653 489999999999999754311 12233345668888999999999999999777 999
Q ss_pred EEEEeCCCCceEEEEeccCCCeE-EEEEccCC---CEEEEeeCCCcEEEEeCCCCc--eeEEeecCCCcEEEEEEEeCCC
Q 004214 404 ACVWRLPDLVSVVTFRGHKRGIW-SVEFSPVD---QVVITASGDKTIKIWSISDGS--CLKTFEGHTSSVLRASFLTRGA 477 (768)
Q Consensus 404 i~i~d~~~~~~~~~~~~~~~~v~-~v~~s~~~---~~l~t~~~d~~i~iwd~~~~~--~~~~~~~~~~~v~~~~~s~~~~ 477 (768)
++++|+.+...+.-++-..-|=. +...+|.. .+-++...++.+.|+|-.... ....-.-|..+|..+.+++-+.
T Consensus 78 ~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~D 157 (558)
T KOG0882|consen 78 VKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGD 157 (558)
T ss_pred eeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeecccc
Confidence 99999987655433332111111 12223321 233334467899999965443 3334446999999999999999
Q ss_pred EEEEEeCCCcEEEEECCC------CeEEEEe---------ccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCHHHHH
Q 004214 478 QIVSCGADGLVKLWTVRT------GECIATY---------DKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAERE 542 (768)
Q Consensus 478 ~l~s~~~dg~i~iwd~~~------~~~~~~~---------~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~ 542 (768)
.+++....|.|.-|.... .+....+ ..-.....++.|+|+|..+.+-+.|..|+++...+++...
T Consensus 158 s~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvq 237 (558)
T KOG0882|consen 158 SAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQ 237 (558)
T ss_pred ceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhh
Confidence 999999999999998762 1111111 1234557899999999999999999999999999998776
Q ss_pred HHHHH
Q 004214 543 EAFRK 547 (768)
Q Consensus 543 ~~~~~ 547 (768)
+..+.
T Consensus 238 eiDE~ 242 (558)
T KOG0882|consen 238 EIDEV 242 (558)
T ss_pred hhhcc
Confidence 55443
No 307
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.75 E-value=2.1e-07 Score=84.24 Aligned_cols=144 Identities=19% Similarity=0.355 Sum_probs=91.7
Q ss_pred CCEEEEEEeCCCeEEEEeCCCceEE-Eeee-cccCcEEEEEEecCCCcEEEEEeCC------CeEEEEeCCCCCCCCccc
Q 004214 296 GKILIVTGSKDNSVRLWDSESRCCV-GVGT-GHMGAVGAVAFSKKLQNFLVSGSSD------HTIKVWSFDGLSDDAEQP 367 (768)
Q Consensus 296 ~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~ 367 (768)
+.. ++++..||.+.+++.+.-..+ .... .|.+. .+.++...+. ++....- +..+.|+++...
T Consensus 101 ~t~-V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~-as~~~~~~~~--~i~s~~~g~~n~~d~~~a~~~~p~~------ 170 (319)
T KOG4714|consen 101 DNR-VCIGYADGSLAVFSTDKDLALMSRIPSIHSGS-ASRKICRHGN--SILSGGCGNWNAQDNFYANTLDPIK------ 170 (319)
T ss_pred CCc-eEecCCCceEEEEechHHHhhhhhcccccccc-cccceeeccc--EEecCCcceEeeccceeeecccccc------
Confidence 444 899999999999987652111 1111 12111 1222223322 2232222 334555554221
Q ss_pred cccceeeEeeccCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCce-EEEEeccCCCeEEEEEccC-CCEEEEeeCCC
Q 004214 368 MNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQDRTACVWRLPDLVS-VVTFRGHKRGIWSVEFSPV-DQVVITASGDK 444 (768)
Q Consensus 368 ~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~v~~v~~s~~-~~~l~t~~~d~ 444 (768)
...........|.+++-+| ..+++++|+.||.+.+||.+.... ...+..|+.+++.+-|+|. +..|+++++||
T Consensus 171 ----t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedG 246 (319)
T KOG4714|consen 171 ----TLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDG 246 (319)
T ss_pred ----cccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCC
Confidence 1111111234488999999 567888899999999999988743 3456789999999999995 67899999999
Q ss_pred cEEEEeCCC
Q 004214 445 TIKIWSISD 453 (768)
Q Consensus 445 ~i~iwd~~~ 453 (768)
.+--||..+
T Consensus 247 slw~wdas~ 255 (319)
T KOG4714|consen 247 SLWHWDAST 255 (319)
T ss_pred cEEEEcCCC
Confidence 999999754
No 308
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.74 E-value=5.2e-07 Score=81.70 Aligned_cols=95 Identities=20% Similarity=0.278 Sum_probs=71.7
Q ss_pred CcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCce-EEEeeecccCcEEEEEEecCCC
Q 004214 262 EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC-CVGVGTGHMGAVGAVAFSKKLQ 340 (768)
Q Consensus 262 ~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~ 340 (768)
+..+.|+++.......-......|.+++ ..|....++++|+.||.+-+||.+... +...+..|..+++.+-|+|..+
T Consensus 159 d~~~a~~~~p~~t~~~~~~~~~~v~~l~--~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p 236 (319)
T KOG4714|consen 159 DNFYANTLDPIKTLIPSKKALDAVTALC--SHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNP 236 (319)
T ss_pred cceeeecccccccccccccccccchhhh--CCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCc
Confidence 4555666654433322222233477775 667777789999999999999998764 3445678999999999999988
Q ss_pred cEEEEEeCCCeEEEEeCC
Q 004214 341 NFLVSGSSDHTIKVWSFD 358 (768)
Q Consensus 341 ~~l~s~~~dg~i~iwd~~ 358 (768)
..|++++.||.+..||-.
T Consensus 237 ~~Lft~sedGslw~wdas 254 (319)
T KOG4714|consen 237 EHLFTCSEDGSLWHWDAS 254 (319)
T ss_pred hheeEecCCCcEEEEcCC
Confidence 899999999999999865
No 309
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.74 E-value=1.4e-05 Score=74.41 Aligned_cols=201 Identities=12% Similarity=0.147 Sum_probs=114.5
Q ss_pred ecCCCEEEEEEeCCCeEEEEeCCCceEEEeeec------ccCcEEEEEEecCC-----CcEEEEEeCCCeEEEEeCCCCC
Q 004214 293 LSSGKILIVTGSKDNSVRLWDSESRCCVGVGTG------HMGAVGAVAFSKKL-----QNFLVSGSSDHTIKVWSFDGLS 361 (768)
Q Consensus 293 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~------~~~~v~~~~~~~~~-----~~~l~s~~~dg~i~iwd~~~~~ 361 (768)
++++..+||.+...|+|++||+....+...-.. -..+|..+.|.+.. ...|++-..+|.++-|-+..+.
T Consensus 51 WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt 130 (282)
T PF15492_consen 51 WSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGT 130 (282)
T ss_pred ECCCCcEEEEEcCCCeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEccc
Confidence 344555699999999999999986544322221 23467777775532 2247777788888887764321
Q ss_pred CCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCE--EEE
Q 004214 362 DDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQV--VIT 439 (768)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~--l~t 439 (768)
...- ...........+...|+++.++|..++|++|+.... +++. -......+++-..-.+..+ .++
T Consensus 131 ~q~y--~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~~----s~a~~~GLtaWRiL~~~Pyyk~v~ 198 (282)
T PF15492_consen 131 NQGY--QENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDGM----SKASSCGLTAWRILSDSPYYKQVT 198 (282)
T ss_pred CCcc--eeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC------CCcc----ccccccCceEEEEcCCCCcEEEcc
Confidence 1000 011112222335678999999999998888875432 0000 0011122222222111111 111
Q ss_pred eeCCC------cEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccC
Q 004214 440 ASGDK------TIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKH 505 (768)
Q Consensus 440 ~~~d~------~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 505 (768)
...|+ +-.+|.+-+.+...........|..|..||||+.|++...+|.|.+|++.+-.+...+..+
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 199 SSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred ccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence 22221 1123333322222222235678999999999999999999999999999988877766543
No 310
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.73 E-value=3.6e-08 Score=64.45 Aligned_cols=39 Identities=49% Similarity=0.929 Sum_probs=36.5
Q ss_pred CEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEE
Q 004214 20 GFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWD 60 (768)
Q Consensus 20 ~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd 60 (768)
|++++.+.+|.+.|++|+|+|++.. +++|+.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~--~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNF--LASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSE--EEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEeccccc--ceeeCCCCEEEEEC
Confidence 4678999999999999999999777 99999999999997
No 311
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.71 E-value=1.7e-06 Score=90.87 Aligned_cols=244 Identities=14% Similarity=0.084 Sum_probs=137.0
Q ss_pred CCCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCC
Q 004214 8 ADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGS 87 (768)
Q Consensus 8 ~dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~ 87 (768)
..|+|.||- ++|+..+... -.-.+++++|+|. ..+||.|-.-|.+.+|...+.+.-.....|..+|..+.|||+|.
T Consensus 39 r~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe--~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~ 114 (1416)
T KOG3617|consen 39 RGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPE--EFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGT 114 (1416)
T ss_pred CCceEEEEe-cCCCCCcccc-cceehhhhccChH--HHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCC
Confidence 456666664 3333222111 1234667999994 45699999999999999988877777778999999999999999
Q ss_pred EEEEEeCCCeEEEEECCCCeeeeeee-----cceeEe--eEEecCCCCCc---------------cccccccchh---hh
Q 004214 88 TLISAGRDKVVNLWDLRDYSCKLTVP-----TYEMVE--AVCAIPPGSAF---------------DSFLSSYNQQ---TI 142 (768)
Q Consensus 88 ~L~s~~~dg~i~vWd~~~~~~~~~~~-----~~~~v~--~~~~~~~~~~~---------------~~~~~~~~~~---~~ 142 (768)
.|+|+..-|.|.+|...-...+...+ ....+. +....+++... ....+..... ..
T Consensus 115 ~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~ 194 (1416)
T KOG3617|consen 115 VLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSD 194 (1416)
T ss_pred eEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhccc
Confidence 99999999999999876332222221 122222 22233332211 1100000000 01
Q ss_pred hcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccC
Q 004214 143 KKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEV 222 (768)
Q Consensus 143 ~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~ 222 (768)
.......+..|+.++.+|+|+-.|-.+.+....+.. ....+.|.+....+.++..+-.+.++-....
T Consensus 195 ~ksgv~~g~~F~~~~~~GtVyyvdq~g~~~~V~k~d-------------S~vQmLf~~~~eai~~i~e~lr~~l~~v~~~ 261 (1416)
T KOG3617|consen 195 EKSGVPKGTEFLFAGKSGTVYYVDQNGRQRTVHKLD-------------SEVQMLFMGYCEAISIIIEFLRDCLIFVLAK 261 (1416)
T ss_pred cccCCCCCcEEEEEcCCceEEEEcCCCcEEEEEEcc-------------chHHHHHhcccceEEEEeeeceeeEEEecCC
Confidence 112233566888999999998888666532211110 0011223333333444444433333322211
Q ss_pred ccc-----------------ce--------eeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEEC
Q 004214 223 PEK-----------------KM--------ELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDL 269 (768)
Q Consensus 223 ~~~-----------------~~--------~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~ 269 (768)
... .+ -.+..+--......+.+++|.. .+..++.|+..|.+.+|--
T Consensus 262 G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr~~eKyg~e~ge~~~c~cY~~-~~~~l~agt~~gnv~~w~~ 332 (1416)
T KOG3617|consen 262 GTSEERCAVKVSGKLGGRQGGIACSESSGVLRKSEKYGLELGEGILCMCYGE-KEIRLWAGTKEGNVTIWLD 332 (1416)
T ss_pred CchHHhhhhhhccccCCccCccccccccccccCCcchhhhcCCceEEEEEec-cceEEEecccCCcEEEeee
Confidence 100 00 0000011112345688888874 6678899999999999964
No 312
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.69 E-value=8.7e-09 Score=108.02 Aligned_cols=219 Identities=14% Similarity=0.249 Sum_probs=160.1
Q ss_pred eeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCC-eEE
Q 004214 275 SYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDH-TIK 353 (768)
Q Consensus 275 ~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg-~i~ 353 (768)
.+.+..|....+|++ ++...+. |+.|+..|.|++|++.+|........|.++|+.+.-+.+|...|.+++... -..
T Consensus 1094 w~~frd~~~~fTc~a--fs~~~~h-L~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1094 WRSFRDETALFTCIA--FSGGTNH-LAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred chhhhccccceeeEE--eecCCce-EEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHH
Confidence 345677888888886 5555555 999999999999999999999999999999999999999887666666555 567
Q ss_pred EEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEE-ec---cCCCeEEEE
Q 004214 354 VWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTF-RG---HKRGIWSVE 429 (768)
Q Consensus 354 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~---~~~~v~~v~ 429 (768)
+|++.... .....+ ..-.++.|+..-..-+.|+......+||+.++.++.++ .+ ....-++..
T Consensus 1171 LW~~~s~~---------~~~Hsf----~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~ 1237 (1516)
T KOG1832|consen 1171 LWDASSTG---------GPRHSF----DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAH 1237 (1516)
T ss_pred Hhcccccc---------Cccccc----cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccc
Confidence 89886421 111111 23457788876555666776678999999998776653 22 222347788
Q ss_pred EccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcE
Q 004214 430 FSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKI 509 (768)
Q Consensus 430 ~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v 509 (768)
|+|+..+++ .|| .+||++..+.++.|...+. -..-.|+|.|..++.-+ -|||+++.+.+++...- .=
T Consensus 1238 FsP~D~LIl---ndG--vLWDvR~~~aIh~FD~ft~-~~~G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP~L--dq 1304 (1516)
T KOG1832|consen 1238 FSPCDTLIL---NDG--VLWDVRIPEAIHRFDQFTD-YGGGGFHPSGNEVIINS-----EIWDMRTFKLLHSVPSL--DQ 1304 (1516)
T ss_pred cCCCcceEe---eCc--eeeeeccHHHHhhhhhhee-cccccccCCCceEEeec-----hhhhhHHHHHHhcCccc--cc
Confidence 999998876 445 5899999888888875542 22456999999988765 48999999988766422 22
Q ss_pred EEEEEcCCCCEEE
Q 004214 510 WALAVGKKTEMFA 522 (768)
Q Consensus 510 ~~l~~s~~~~~l~ 522 (768)
..+.|...|..+.
T Consensus 1305 c~VtFNstG~VmY 1317 (1516)
T KOG1832|consen 1305 CAVTFNSTGDVMY 1317 (1516)
T ss_pred eEEEeccCccchh
Confidence 4567777776554
No 313
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.69 E-value=8e-05 Score=67.98 Aligned_cols=111 Identities=10% Similarity=0.009 Sum_probs=81.1
Q ss_pred EEEeecCCCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEE
Q 004214 2 FALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMA 81 (768)
Q Consensus 2 ~latg~~dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~ 81 (768)
+++.|+..+.++--|..+|.....-. -..+|-+-+.- -|++ ++.|...|.+.+-+..+|+....+..-..-=..-.
T Consensus 25 ~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdf--VV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~ 100 (354)
T KOG4649|consen 25 LVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDF--VVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQ 100 (354)
T ss_pred EEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCE--EEEEEccCcEEEEEecchhheeeeeehhhhccceE
Confidence 56778888999999999988654321 23344443333 3455 99999999999999999988877764333222334
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCeeeeeeecce
Q 004214 82 ITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYE 116 (768)
Q Consensus 82 fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~ 116 (768)
..+++..+..++.|++....|..+..++.......
T Consensus 101 ~d~~~glIycgshd~~~yalD~~~~~cVykskcgG 135 (354)
T KOG4649|consen 101 CDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGG 135 (354)
T ss_pred EcCCCceEEEecCCCcEEEecccccceEEecccCC
Confidence 56789999999999999999999988887755443
No 314
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.67 E-value=2.3e-08 Score=104.96 Aligned_cols=266 Identities=18% Similarity=0.195 Sum_probs=177.0
Q ss_pred EEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCC-eE
Q 004214 231 LSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDN-SV 309 (768)
Q Consensus 231 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg-~i 309 (768)
..+.+..++...++++|+. +.++|++|+..|.|++|+..+|.......+|..+++-+. .+.++..+|.+++... -.
T Consensus 1093 ~w~~frd~~~~fTc~afs~-~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~ve--Ps~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFSG-GTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVE--PSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred cchhhhccccceeeEEeec-CCceEEeeeccceEEEEEccCcccccccccccccccccc--ccCCcceeeeeccccCchH
Confidence 3445566777888899885 778999999999999999999999999999999999998 7778887666665554 67
Q ss_pred EEEeCCC-ceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEE
Q 004214 310 RLWDSES-RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAV 388 (768)
Q Consensus 310 ~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 388 (768)
.+|++.+ +.....+. .-.++.|+.... .-+.|+......+||+.+...... ...-..+..-.-++..|
T Consensus 1170 aLW~~~s~~~~~Hsf~----ed~~vkFsn~~q-~r~~gt~~d~a~~YDvqT~~~l~t------ylt~~~~~~y~~n~a~F 1238 (1516)
T KOG1832|consen 1170 ALWDASSTGGPRHSFD----EDKAVKFSNSLQ-FRALGTEADDALLYDVQTCSPLQT------YLTDTVTSSYSNNLAHF 1238 (1516)
T ss_pred HHhccccccCcccccc----ccceeehhhhHH-HHHhcccccceEEEecccCcHHHH------hcCcchhhhhhcccccc
Confidence 7998864 33333333 345677876533 344555556788999986532111 00000111122267889
Q ss_pred ccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEE
Q 004214 389 APNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVL 468 (768)
Q Consensus 389 s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~ 468 (768)
+|+..+++- || .+||++..+.+..|...+.. ..-.|+|+|.-++.-+. |||+++.+.++....-. -.
T Consensus 1239 sP~D~LIln---dG--vLWDvR~~~aIh~FD~ft~~-~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~Ld--qc 1305 (1516)
T KOG1832|consen 1239 SPCDTLILN---DG--VLWDVRIPEAIHRFDQFTDY-GGGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSLD--QC 1305 (1516)
T ss_pred CCCcceEee---Cc--eeeeeccHHHHhhhhhheec-ccccccCCCceEEeech-----hhhhHHHHHHhcCcccc--ce
Confidence 999888764 44 48999988877776654422 23359999998888765 99999998887765322 24
Q ss_pred EEEEEeCCCEEEEEeC--C---------------CcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEE
Q 004214 469 RASFLTRGAQIVSCGA--D---------------GLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATG 524 (768)
Q Consensus 469 ~~~~s~~~~~l~s~~~--d---------------g~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~ 524 (768)
.+.|+..|+.++..-. | ...+-|+......+.++. -...+..++-+|...+|...
T Consensus 1306 ~VtFNstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~-v~R~~~Dlct~~~D~~l~vI 1377 (1516)
T KOG1832|consen 1306 AVTFNSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIP-VDRCLLDLCTEPTDSFLGVI 1377 (1516)
T ss_pred EEEeccCccchhhhhhhhhhhhhhcccccccchhhhhccccccccccceeee-cccchhhhhcCCccceEEEE
Confidence 5777777765543320 0 123445555566666665 34456666667766666544
No 315
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.67 E-value=7.5e-08 Score=62.89 Aligned_cols=39 Identities=38% Similarity=0.678 Sum_probs=37.2
Q ss_pred CeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 004214 64 KKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWD 102 (768)
Q Consensus 64 ~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd 102 (768)
++++.++.+|.+.|++|+|+|++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 468899999999999999999999999999999999997
No 316
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.67 E-value=0.00014 Score=70.90 Aligned_cols=278 Identities=15% Similarity=0.117 Sum_probs=170.4
Q ss_pred CcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEe--------CCCcEEEEECCCCeeEEEecCc---cc---
Q 004214 10 RKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGS--------DDATVRVWDLLAKKCVATLDKH---FS--- 75 (768)
Q Consensus 10 g~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~--------~dg~I~iWd~~~~~~~~~l~~h---~~--- 75 (768)
+.+.|+|.++++.+-.+..-- .-.+..+||++..+.++.- ..-.|.+||..+-.....+.-. ..
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~--~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGF--LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEES--SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEeeccc--CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 589999999999777665322 2236689999986655542 2345999999999887754321 21
Q ss_pred -eeEEEEEcCCCCEEEEEe--CCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceE
Q 004214 76 -RVTSMAITSDGSTLISAG--RDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIH 152 (768)
Q Consensus 76 -~V~~l~fs~d~~~L~s~~--~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (768)
....+++|.||++++..- -...|.|-|+..++.+..++.+.-... .|.++ ..
T Consensus 95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~i---yP~~~----------------------~~ 149 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLI---YPSGN----------------------RG 149 (342)
T ss_dssp --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEE---EEEET----------------------TE
T ss_pred ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEE---EecCC----------------------Cc
Confidence 234578999999988764 456899999999999888876543222 22221 26
Q ss_pred EEEeeCCcEEEEEEcCCc-eeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEE
Q 004214 153 FITVGERGIVRMWNADSA-CLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELIL 231 (768)
Q Consensus 153 ~~~~~~~g~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~ 231 (768)
|.+.|.||.+....++.. +.. ..... -+ .......+....+...+..++..+.+|.++-.++........ .
T Consensus 150 F~~lC~DGsl~~v~Ld~~Gk~~-~~~t~---~F-~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~---~ 221 (342)
T PF06433_consen 150 FSMLCGDGSLLTVTLDADGKEA-QKSTK---VF-DPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFG---K 221 (342)
T ss_dssp EEEEETTSCEEEEEETSTSSEE-EEEEE---ES-STTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEE---E
T ss_pred eEEEecCCceEEEEECCCCCEe-Eeecc---cc-CCCCcccccccceECCCCeEEEEecCCEEEEEeccCCccccc---C
Confidence 889999999999998844 333 21111 11 112223344445556677888899999999888776642111 1
Q ss_pred Eeeecc----c----CCceeEEEEecCCCCEEEEEeC---------CCcEEEEECCCceeeeeeeCCccceEEEeeeeec
Q 004214 232 SKRLVG----Y----NEEILDLKFLGEEEQYLAVATN---------IEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALS 294 (768)
Q Consensus 232 ~~~~~~----~----~~~i~~~~~~~~~~~~l~~~~~---------~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~ 294 (768)
...+.. . .+.---++++...+.+++.-.. ...|.+||+.+++.+..+... .++.++. ...
T Consensus 222 ~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~-~~~~Si~--Vsq 298 (342)
T PF06433_consen 222 PWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE-HPIDSIA--VSQ 298 (342)
T ss_dssp EEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE-EEESEEE--EES
T ss_pred cccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC-CccceEE--Ecc
Confidence 111110 0 1122235666555554444221 125888999999999888752 3455666 667
Q ss_pred CCCEEEEEE-eCCCeEEEEeCCCceEEEeeec
Q 004214 295 SGKILIVTG-SKDNSVRLWDSESRCCVGVGTG 325 (768)
Q Consensus 295 ~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~ 325 (768)
++..+|++. ..++.+.+||..+++.++....
T Consensus 299 d~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 299 DDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp SSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred CCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 777667655 4579999999999999888764
No 317
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.66 E-value=2.7e-05 Score=75.79 Aligned_cols=193 Identities=15% Similarity=0.078 Sum_probs=98.5
Q ss_pred CcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCC-CceEEEe----eecccCcEE-EEEE
Q 004214 262 EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSE-SRCCVGV----GTGHMGAVG-AVAF 335 (768)
Q Consensus 262 ~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~----~~~~~~~v~-~~~~ 335 (768)
..|.|.|+...+.+..+.... +..+ ....+ .. |.+-+.||.+.-..+. .|+.... +.....++. .-++
T Consensus 118 ~SVtVVDl~~~kvv~ei~~PG--C~~i--yP~~~-~~-F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~ 191 (342)
T PF06433_consen 118 TSVTVVDLAAKKVVGEIDTPG--CWLI--YPSGN-RG-FSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAY 191 (342)
T ss_dssp EEEEEEETTTTEEEEEEEGTS--EEEE--EEEET-TE-EEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EE
T ss_pred CeEEEEECCCCceeeeecCCC--EEEE--EecCC-Cc-eEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccce
Confidence 356666776666665543221 1111 12222 23 6666677777776665 3333321 111112211 2223
Q ss_pred ecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeE--eeccCCCeEEEEEccCCCEEEEEeC---CC-------c
Q 004214 336 SKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAV--VAAHGKDINSLAVAPNDSLVCTGSQ---DR-------T 403 (768)
Q Consensus 336 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~s~~~~~l~~~~~---dg-------~ 403 (768)
...+. .++-.+.+|.|+--|+.........+........ ..--.+.-.-+++++..+.|.+.-. +| .
T Consensus 192 ~~~~~-~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgte 270 (342)
T PF06433_consen 192 SRDGG-RLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTE 270 (342)
T ss_dssp ETTTT-EEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEE
T ss_pred ECCCC-eEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceE
Confidence 33323 3444667777777776644211100000000000 0001123345777775555544322 11 5
Q ss_pred EEEEeCCCCceEEEEeccCCCeEEEEEccCCC-EEEEe-eCCCcEEEEeCCCCceeEEeec
Q 004214 404 ACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQ-VVITA-SGDKTIKIWSISDGSCLKTFEG 462 (768)
Q Consensus 404 i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~t~-~~d~~i~iwd~~~~~~~~~~~~ 462 (768)
|-+||+.+++.+..+.. ..++.+|..+.+.+ +|++. ..++.+.+||..+|+.++++..
T Consensus 271 VWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 271 VWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred EEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 88889999999998874 35688999999875 56544 4679999999999999999874
No 318
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.65 E-value=7e-05 Score=72.19 Aligned_cols=243 Identities=12% Similarity=0.112 Sum_probs=153.0
Q ss_pred eEEEEecCCCCEEEEEeCCCc-EEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEE----EeCCCeEEEEeCC-C
Q 004214 243 LDLKFLGEEEQYLAVATNIEQ-VQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVT----GSKDNSVRLWDSE-S 316 (768)
Q Consensus 243 ~~~~~~~~~~~~l~~~~~~~~-i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~----~~~dg~i~iwd~~-~ 316 (768)
..++..|.....++++-.-|. ..+||..+++....+....+.-..=..+|+++++.++++ .+..|.|-|||.. +
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~ 87 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARG 87 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCC
Confidence 445666667777777777664 567999999888766543333222223377888874444 2345899999999 6
Q ss_pred ceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCC--CE
Q 004214 317 RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND--SL 394 (768)
Q Consensus 317 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~--~~ 394 (768)
-+.+..+..|.-.-..+.+.|+++.+++.-+ -|.- +|+. ..
T Consensus 88 ~~ri~E~~s~GIGPHel~l~pDG~tLvVANG---GI~T----------------------------------hpd~GR~k 130 (305)
T PF07433_consen 88 YRRIGEFPSHGIGPHELLLMPDGETLVVANG---GIET----------------------------------HPDSGRAK 130 (305)
T ss_pred cEEEeEecCCCcChhhEEEcCCCCEEEEEcC---CCcc----------------------------------CcccCcee
Confidence 7778888877777778889999864443321 1110 0100 01
Q ss_pred EEEEeCCCcEEEEeCCCCceEEE--E--eccCCCeEEEEEccCCCEEEEeeCCCc-------EEEEeCCCCceeEEee--
Q 004214 395 VCTGSQDRTACVWRLPDLVSVVT--F--RGHKRGIWSVEFSPVDQVVITASGDKT-------IKIWSISDGSCLKTFE-- 461 (768)
Q Consensus 395 l~~~~~dg~i~i~d~~~~~~~~~--~--~~~~~~v~~v~~s~~~~~l~t~~~d~~-------i~iwd~~~~~~~~~~~-- 461 (768)
|-..+.+.++.+.|..+++.+.. + ..|...|..+++.++|..++..-..|. |-+++ .+..+..+.
T Consensus 131 LNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~~p 208 (305)
T PF07433_consen 131 LNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHR--RGGALRLLPAP 208 (305)
T ss_pred cChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEc--CCCcceeccCC
Confidence 11122334455556666666655 3 237778999999999876665433322 33333 233233222
Q ss_pred -----cCCCcEEEEEEEeCCCEEEEEeC-CCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCC
Q 004214 462 -----GHTSSVLRASFLTRGAQIVSCGA-DGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSD 527 (768)
Q Consensus 462 -----~~~~~v~~~~~s~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~d 527 (768)
.-.+.+-++++++++.++++.+- .|.+.+||..+++.+.... -..+..++..+++ ++++.+..
T Consensus 209 ~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~--l~D~cGva~~~~~-f~~ssG~G 277 (305)
T PF07433_consen 209 EEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP--LPDACGVAPTDDG-FLVSSGQG 277 (305)
T ss_pred hHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc--cCceeeeeecCCc-eEEeCCCc
Confidence 34467889999999998866665 5689999999999988764 3456677777777 66655543
No 319
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.64 E-value=7.3e-08 Score=90.61 Aligned_cols=143 Identities=16% Similarity=0.291 Sum_probs=115.0
Q ss_pred EEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCC-----ceeEEeecCCCcEEEE
Q 004214 396 CTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG-----SCLKTFEGHTSSVLRA 470 (768)
Q Consensus 396 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~-----~~~~~~~~~~~~v~~~ 470 (768)
++.+.+..+-+-|+.++.... |. ..+.|.++.|...++++..|+.+|.|..+|++.+ .+...+. |...|+++
T Consensus 228 fs~G~sqqv~L~nvetg~~qs-f~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtsl 304 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQS-FQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSL 304 (425)
T ss_pred ecccccceeEEEEeecccccc-cc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhh
Confidence 444556678888888764332 33 5677889999999999999999999999999864 4556665 99999999
Q ss_pred EEEe-CCCEEEEEeCCCcEEEEECCCCeE---EEEeccCCCcEEE--EEEcCCCCEEEEEeCCCcEEEEEcCCHHHH
Q 004214 471 SFLT-RGAQIVSCGADGLVKLWTVRTGEC---IATYDKHEDKIWA--LAVGKKTEMFATGGSDALVNLWHDSTAAER 541 (768)
Q Consensus 471 ~~s~-~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~v~~--l~~s~~~~~l~s~~~dg~v~vw~~~~~~~~ 541 (768)
.... ++++|++.+.+|.|++||.+--++ +.++.+|...-.- +.+.+....++++|.|...+||.+..+...
T Consensus 305 q~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl 381 (425)
T KOG2695|consen 305 QILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLL 381 (425)
T ss_pred hhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCcee
Confidence 9877 788999999999999999988777 8899888765433 345677888999999999999999876543
No 320
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.64 E-value=7.8e-07 Score=94.41 Aligned_cols=181 Identities=14% Similarity=0.210 Sum_probs=134.1
Q ss_pred EEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEecc
Q 004214 342 FLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGH 421 (768)
Q Consensus 342 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 421 (768)
.++-|+-...+..+|++... ...........|.- +..+++.+.+|...|+|.+-|..+.+.+.++..|
T Consensus 149 ~~i~Gg~Q~~li~~Dl~~~~----------e~r~~~v~a~~v~i--mR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aH 216 (1118)
T KOG1275|consen 149 TLIMGGLQEKLIHIDLNTEK----------ETRTTNVSASGVTI--MRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAH 216 (1118)
T ss_pred ceeecchhhheeeeecccce----------eeeeeeccCCceEE--EEecCcEEEeecccceEEeecCCcCceeeeeecc
Confidence 46777777777778887542 22222222223333 3457899999999999999999999999999999
Q ss_pred CCCeEEEEEccCCCEEEEeeC---------CCcEEEEeCCCCceeEEeecCCCcEEEEEEEeC-CCEEEEEeCCCcEEEE
Q 004214 422 KRGIWSVEFSPVDQVVITASG---------DKTIKIWSISDGSCLKTFEGHTSSVLRASFLTR-GAQIVSCGADGLVKLW 491 (768)
Q Consensus 422 ~~~v~~v~~s~~~~~l~t~~~---------d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~dg~i~iw 491 (768)
.+.|.++... |++|++++. |..|+|||++.-+.+..+.-+.++ .-+.|.|. ...+++++..|...+-
T Consensus 217 s~siSDfDv~--GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~v 293 (1118)
T KOG1275|consen 217 SGSISDFDVQ--GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFV 293 (1118)
T ss_pred ccceeeeecc--CCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeec
Confidence 9999887776 899999875 556899999988777666655544 44677775 4578888889999998
Q ss_pred ECC---CC-eEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 004214 492 TVR---TG-ECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDST 537 (768)
Q Consensus 492 d~~---~~-~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~ 537 (768)
|.. +. .-+..+......+.++++|++++.++.|..+|.|.+|....
T Consensus 294 d~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~~~ 343 (1118)
T KOG1275|consen 294 DTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWADRP 343 (1118)
T ss_pred cccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecCCC
Confidence 833 22 12233333344599999999999999999999999998543
No 321
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.62 E-value=7.6e-05 Score=69.60 Aligned_cols=237 Identities=14% Similarity=0.159 Sum_probs=132.1
Q ss_pred cCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeee
Q 004214 200 PSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLA 279 (768)
Q Consensus 200 ~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~ 279 (768)
.++..++++..|..|.+-...+.-..... ...........-..++|+ ++..+||.+...|.|++||+...... .+.
T Consensus 6 ~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~--kcqVpkD~~PQWRkl~WS-pD~tlLa~a~S~G~i~vfdl~g~~lf-~I~ 81 (282)
T PF15492_consen 6 SSDGKLLAILQDQCIEIRSAKDDFSSIIG--KCQVPKDPNPQWRKLAWS-PDCTLLAYAESTGTIRVFDLMGSELF-VIP 81 (282)
T ss_pred cCCCcEEEEEeccEEEEEeccCCchheeE--EEecCCCCCchheEEEEC-CCCcEEEEEcCCCeEEEEecccceeE-EcC
Confidence 35566777888888877665544321111 111122334456778887 68899999999999999999864433 322
Q ss_pred C-C------ccceEEEeeeeecCC---CEEEEEEeCCCeEEEEeCCC-----ceEEEeee---cccCcEEEEEEecCCCc
Q 004214 280 G-H------SEIVLCLDTCALSSG---KILIVTGSKDNSVRLWDSES-----RCCVGVGT---GHMGAVGAVAFSKKLQN 341 (768)
Q Consensus 280 ~-~------~~~v~~l~~~~~~~~---~~~l~~~~~dg~i~iwd~~~-----~~~~~~~~---~~~~~v~~~~~~~~~~~ 341 (768)
. + ...|..+.+...... ...|++-...|.++-|-+.. .+....+. .+...|.++.++|..+
T Consensus 82 p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~- 160 (282)
T PF15492_consen 82 PAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHR- 160 (282)
T ss_pred cccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCC-
Confidence 2 1 234444432111111 22356666778777776432 22223332 2467899999999866
Q ss_pred EEEEEeC-CCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEE---ccCCCEEEEEeCCC------cEEEEeCCC
Q 004214 342 FLVSGSS-DHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAV---APNDSLVCTGSQDR------TACVWRLPD 411 (768)
Q Consensus 342 ~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---s~~~~~l~~~~~dg------~i~i~d~~~ 411 (768)
+|++|+. ...-..+. +....+++-.+ +|..+. ++...|+ +..+|.+.+
T Consensus 161 LLlVgG~~~~~~~~s~---------------------a~~~GLtaWRiL~~~Pyyk~-v~~~~~~~~~~~~~~~~~~~~~ 218 (282)
T PF15492_consen 161 LLLVGGCEQNQDGMSK---------------------ASSCGLTAWRILSDSPYYKQ-VTSSEDDITASSKRRGLLRIPS 218 (282)
T ss_pred EEEEeccCCCCCcccc---------------------ccccCceEEEEcCCCCcEEE-ccccCccccccccccceeeccc
Confidence 5555543 32100000 00111111111 111111 1111111 123444433
Q ss_pred CceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecC
Q 004214 412 LVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGH 463 (768)
Q Consensus 412 ~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~ 463 (768)
.+...........|..|..||||++||+...+|.|.+|++.+-++.+.+..+
T Consensus 219 ~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 219 FKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred eeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence 3332222335678999999999999999999999999999888877776533
No 322
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.58 E-value=0.00055 Score=62.67 Aligned_cols=262 Identities=15% Similarity=0.090 Sum_probs=133.0
Q ss_pred CEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEE
Q 004214 253 QYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGA 332 (768)
Q Consensus 253 ~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 332 (768)
++++.|...|.+++.+..++.....+..-. .|.+-+. ..++++ ++..|+.|++.+..|..+..++...+-..+...+
T Consensus 64 dfVV~GCy~g~lYfl~~~tGs~~w~f~~~~-~vk~~a~-~d~~~g-lIycgshd~~~yalD~~~~~cVykskcgG~~f~s 140 (354)
T KOG4649|consen 64 DFVVLGCYSGGLYFLCVKTGSQIWNFVILE-TVKVRAQ-CDFDGG-LIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVS 140 (354)
T ss_pred CEEEEEEccCcEEEEEecchhheeeeeehh-hhccceE-EcCCCc-eEEEecCCCcEEEecccccceEEecccCCceecc
Confidence 357777777888888888887665554321 2222221 224444 5999999999999999998888776544444444
Q ss_pred EEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEE--EEEccCCCEEEEEeCCCcEEEEeCC
Q 004214 333 VAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINS--LAVAPNDSLVCTGSQDRTACVWRLP 410 (768)
Q Consensus 333 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~s~~~~~l~~~~~dg~i~i~d~~ 410 (768)
-++.|... -|..+...|.+.--........ .. .......+|.+ ++ -+..+..++-||.+.-++ +
T Consensus 141 P~i~~g~~-sly~a~t~G~vlavt~~~~~~~--------~~-w~~~~~~PiF~splc---v~~sv~i~~VdG~l~~f~-~ 206 (354)
T KOG4649|consen 141 PVIAPGDG-SLYAAITAGAVLAVTKNPYSST--------EF-WAATRFGPIFASPLC---VGSSVIITTVDGVLTSFD-E 206 (354)
T ss_pred ceecCCCc-eEEEEeccceEEEEccCCCCcc--------ee-hhhhcCCccccCcee---ccceEEEEEeccEEEEEc-C
Confidence 45555323 3555555555544433322100 00 00001112211 11 133455556666666666 5
Q ss_pred CCceEEEEeccCCCeEE-EEEc-cCCCEEEEeeCCCc--------EEEEeCCCCceeEEeecCCCcEEEEEEE-e---CC
Q 004214 411 DLVSVVTFRGHKRGIWS-VEFS-PVDQVVITASGDKT--------IKIWSISDGSCLKTFEGHTSSVLRASFL-T---RG 476 (768)
Q Consensus 411 ~~~~~~~~~~~~~~v~~-v~~s-~~~~~l~t~~~d~~--------i~iwd~~~~~~~~~~~~~~~~v~~~~~s-~---~~ 476 (768)
.++.+..+. ..++|.. -+-+ |..+.+..+..+.. -.+|..++|...+..-.. -....+. + ..
T Consensus 207 sG~qvwr~~-t~GpIf~~Pc~s~Ps~q~i~~~~~~Cf~~~~p~~ghL~w~~~~g~t~~vy~~p---~l~F~~h~~~~S~~ 282 (354)
T KOG4649|consen 207 SGRQVWRPA-TKGPIFMEPCESRPSCQQISLENENCFCAPLPIAGHLLWATQSGTTLHVYLSP---KLRFDLHSPGISYP 282 (354)
T ss_pred CCcEEEeec-CCCceecccccCCCcceEEEEecCCeEEEeccccceEEEEecCCcEEEEEeCc---ccceeccCCCCcch
Confidence 555555333 2233321 1111 33344444444332 234555555333222111 0111111 1 23
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEE---E-----E-cC--CCCEEEEEeCCCcEEEEEcCC
Q 004214 477 AQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWAL---A-----V-GK--KTEMFATGGSDALVNLWHDST 537 (768)
Q Consensus 477 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l---~-----~-s~--~~~~l~s~~~dg~v~vw~~~~ 537 (768)
++|..++.||.+.|.-++. .+.....|.+.+..+ . | || -+.+|+.|+.|..|+-||+.+
T Consensus 283 ~ll~~~s~dgkv~il~~~~--sl~~~~s~~g~lq~~~~~el~~eIFsSPvii~grl~igcRDdYv~cldl~~ 352 (354)
T KOG4649|consen 283 KLLRRSSGDGKVMILMTSK--SLAEISSNGGELQNLEAIELSNEIFSSPVIIDGRLLIGCRDDYVRCLDLDT 352 (354)
T ss_pred hhhhhhcCCCcEEEEEecc--cccccccCCCccceEEEeecCcccccCCeEEccEEEEEEccCeEEEEeccc
Confidence 5677888899888874432 233444444433222 1 1 23 134688899999999999876
No 323
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=1.1e-05 Score=77.92 Aligned_cols=265 Identities=13% Similarity=0.050 Sum_probs=152.8
Q ss_pred EEEEECCCCeeEEEecCccceeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccc
Q 004214 56 VRVWDLLAKKCVATLDKHFSRVTSMAITSDGS-TLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFL 134 (768)
Q Consensus 56 I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~-~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 134 (768)
|++.+..+.+....+.+|...|..++|||... +|..++.+..|.|.|+++..++..+..+..+.+++|.-+...
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h----- 249 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERH----- 249 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcc-----
Confidence 56666656666666778888999999999877 788899999999999999999999999999999999877642
Q ss_pred cccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeee-ecCCceeecccccCcccceeEE------EEccCCCceEE
Q 004214 135 SSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYE-QKSSDVTISFEMDDSKRGFTAA------TVLPSNQGLLC 207 (768)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~ 207 (768)
+++.|-.+|.|.+||+....-.. ...... ....+..+ ..++.+..+++
T Consensus 250 -----------------~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~--------t~~pv~~i~~~~~n~~f~~gglLv~ 304 (463)
T KOG1645|consen 250 -----------------VIYAGLQNGMVLVYDMRQPEGPLMELVANV--------TINPVHKIAPVQPNKIFTSGGLLVF 304 (463)
T ss_pred -----------------eeEEeccCceEEEEEccCCCchHhhhhhhh--------ccCcceeecccCccccccccceEEe
Confidence 78888999999999997762111 000000 00111111 22233333333
Q ss_pred EEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCc------EEE-EECCCceeeee-ee
Q 004214 208 VTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQ------VQV-YDLSSMSCSYV-LA 279 (768)
Q Consensus 208 ~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~------i~i-~d~~~~~~~~~-~~ 279 (768)
...+ +..|+.....+.. ......+..+...++.+.+..+..|++.-.+.. +-. .|...|..+.. -.
T Consensus 305 ~lt~--l~f~ei~~s~~~~----p~vlele~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~ 378 (463)
T KOG1645|consen 305 ALTV--LQFYEIVFSAECL----PCVLELEPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRR 378 (463)
T ss_pred eehh--hhhhhhhccccCC----CcccccCCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecc
Confidence 3322 3344433222110 111112334455666666555555555444211 111 11112221111 11
Q ss_pred CCcc----ceEE-EeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEec-CCCcEEEEEeCCCeEE
Q 004214 280 GHSE----IVLC-LDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSK-KLQNFLVSGSSDHTIK 353 (768)
Q Consensus 280 ~~~~----~v~~-l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~s~~~dg~i~ 353 (768)
++.+ .+.. -+....+++..++.+|+..+.+.+||..+.+.+..+... .+|..++... +++.+|++-. |..++
T Consensus 379 ~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~evvQ~l~~~-epv~Dicp~~~n~~syLa~LT-d~~v~ 456 (463)
T KOG1645|consen 379 TYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFEVVQTLALS-EPVLDICPNDTNGSSYLALLT-DDRVH 456 (463)
T ss_pred cccCCcccccccccceeccccccEEEEecCCcceeEEeccchhheeeecccC-cceeecceeecCCcchhhhee-cceEE
Confidence 1100 0000 000123444555667777889999999999998887654 7788777654 3444555444 55677
Q ss_pred EEeCC
Q 004214 354 VWSFD 358 (768)
Q Consensus 354 iwd~~ 358 (768)
+|..+
T Consensus 457 Iyk~e 461 (463)
T KOG1645|consen 457 IYKNE 461 (463)
T ss_pred EEecC
Confidence 77643
No 324
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.50 E-value=0.0001 Score=81.60 Aligned_cols=242 Identities=12% Similarity=0.108 Sum_probs=139.6
Q ss_pred CCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCce
Q 004214 239 NEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC 318 (768)
Q Consensus 239 ~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 318 (768)
++.|.++.|.. +.+.+++++..|.|.+.|.++.... ....-...|.+++ ++++... ++..+..+++.+-.. +..
T Consensus 68 d~~i~s~~fl~-d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aas--wS~Dee~-l~liT~~~tll~mT~-~f~ 141 (1265)
T KOG1920|consen 68 DDEIVSVQFLA-DTNSICVITALGDIILVDPETLELE-IVGNVDNGISAAS--WSPDEEL-LALITGRQTLLFMTK-DFE 141 (1265)
T ss_pred CcceEEEEEec-ccceEEEEecCCcEEEEccccccee-eeeeccCceEEEe--ecCCCcE-EEEEeCCcEEEEEec-ccc
Confidence 36899999985 6667788888899999988776543 3333456677776 6666665 777777777665432 222
Q ss_pred EEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccc-cccceeeEeeccCCCeEEEEEccCCCEEEE
Q 004214 319 CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQP-MNLKAKAVVAAHGKDINSLAVAPNDSLVCT 397 (768)
Q Consensus 319 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 397 (768)
++....-+ ..-.+.+ -++.+++...=.-+.-..+....... ...+..... ...+.=+++.|--||.++|+
T Consensus 142 ~i~E~~L~------~d~~~~s--k~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~-~~~~~~~~IsWRgDg~~fAV 212 (1265)
T KOG1920|consen 142 PIAEKPLD------ADDERKS--KFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQI-EQDDHKTSISWRGDGEYFAV 212 (1265)
T ss_pred chhccccc------ccccccc--ccceecccccceeeecchhhhcccccccccccccch-hhccCCceEEEccCCcEEEE
Confidence 22211111 1111221 24444443322222221111000000 000000000 12223357899999999998
Q ss_pred Ee-----CCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEee---CCCcEEEEeCCCCceeE----EeecCCC
Q 004214 398 GS-----QDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITAS---GDKTIKIWSISDGSCLK----TFEGHTS 465 (768)
Q Consensus 398 ~~-----~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~---~d~~i~iwd~~~~~~~~----~~~~~~~ 465 (768)
.. .-+.|++||.+ +..-..-....+--.+++|-|.|..+++-. .|+.|.+|.- +|-... .+.....
T Consensus 213 s~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr-NGL~hg~f~l~~p~de~ 290 (1265)
T KOG1920|consen 213 SFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFER-NGLRHGEFVLPFPLDEK 290 (1265)
T ss_pred EEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEec-CCccccccccCCccccc
Confidence 32 23789999976 433222222334456899999999998753 4567888873 443333 2333344
Q ss_pred cEEEEEEEeCCCEEEE---EeCCCcEEEEECCCCe
Q 004214 466 SVLRASFLTRGAQIVS---CGADGLVKLWTVRTGE 497 (768)
Q Consensus 466 ~v~~~~~s~~~~~l~s---~~~dg~i~iwd~~~~~ 497 (768)
.+..++|+.++..|++ ......|++|-+.+..
T Consensus 291 ~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 291 EVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred chheeeecCCCCceeeeecccccceEEEEEecCeE
Confidence 5899999999999987 4444469999988764
No 325
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.48 E-value=2.6e-06 Score=90.66 Aligned_cols=187 Identities=16% Similarity=0.211 Sum_probs=138.9
Q ss_pred EEeecCCCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEE
Q 004214 3 ALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAI 82 (768)
Q Consensus 3 latg~~dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~f 82 (768)
++.||-...+..+|..+++..+...-..+.|+-|+... +. +++|...|+|.+-|..+.+.++++..|++.|.++..
T Consensus 150 ~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nn--r~--lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv 225 (1118)
T KOG1275|consen 150 LIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYNN--RN--LFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV 225 (1118)
T ss_pred eeecchhhheeeeecccceeeeeeeccCCceEEEEecC--cE--EEeecccceEEeecCCcCceeeeeeccccceeeeec
Confidence 56688888899999999987776665555688777743 55 999999999999999999999999999999987666
Q ss_pred cCCCCEEEEEe---------CCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEE
Q 004214 83 TSDGSTLISAG---------RDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHF 153 (768)
Q Consensus 83 s~d~~~L~s~~---------~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (768)
. |+.|++|| .|..|+|||++..+.+..+..+....-+.|.|.- ...+
T Consensus 226 ~--GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl----------------------~t~~ 281 (1118)
T KOG1275|consen 226 Q--GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSL----------------------TTRL 281 (1118)
T ss_pred c--CCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccc----------------------cceE
Confidence 4 89999998 3667899999998877776655554444555432 2367
Q ss_pred EEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCc
Q 004214 154 ITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVP 223 (768)
Q Consensus 154 ~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~ 223 (768)
++++..|...+-|..+-. ...............+..+.++++++.++.+..+|.+.+|.....+
T Consensus 282 ~V~S~sGq~q~vd~~~ls------NP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~~~~P 345 (1118)
T KOG1275|consen 282 AVTSQSGQFQFVDTATLS------NPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWADRPQP 345 (1118)
T ss_pred EEEecccceeeccccccC------CCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecCCCCC
Confidence 888888888887733220 0000001111223457888999999999999999999999844433
No 326
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.45 E-value=6.4e-05 Score=80.06 Aligned_cols=208 Identities=15% Similarity=0.182 Sum_probs=137.8
Q ss_pred ecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccc-eEEEeeeeecCCCEEEEEEeCCC-----eEEEEeCCCc----
Q 004214 248 LGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEI-VLCLDTCALSSGKILIVTGSKDN-----SVRLWDSESR---- 317 (768)
Q Consensus 248 ~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~-v~~l~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~---- 317 (768)
..+++..++.|+.+|.|.+++-. .+..+.++.+... +..+ +..++..+|++.+.|+ .+++|+++..
T Consensus 31 ~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L---~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~ 106 (933)
T KOG2114|consen 31 CSSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFL---YILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN 106 (933)
T ss_pred EcCCCceEEEeeccccEEEeccc-ceeeehheecchhhhhHh---hcccCceEEEEEeecCCCCceEEEEecccccCCCC
Confidence 34678899999999999988743 3333455555555 4444 4455545566666554 5899998632
Q ss_pred --eEE---Eeee----cccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEE
Q 004214 318 --CCV---GVGT----GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAV 388 (768)
Q Consensus 318 --~~~---~~~~----~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 388 (768)
.++ +.+. ..+.++.+++++.+-+ .+|+|-.+|.|..+.-+-... .............+|+.+++
T Consensus 107 sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~-~Iv~Gf~nG~V~~~~GDi~RD------rgsr~~~~~~~~~pITgL~~ 179 (933)
T KOG2114|consen 107 SPQCLYEHRIFTIKNPTNPSPASSLAVSEDLK-TIVCGFTNGLVICYKGDILRD------RGSRQDYSHRGKEPITGLAL 179 (933)
T ss_pred CcceeeeeeeeccCCCCCCCcceEEEEEcccc-EEEEEecCcEEEEEcCcchhc------cccceeeeccCCCCceeeEE
Confidence 233 1111 2356788999998844 799999999999985432111 11122223345679999999
Q ss_pred ccCCCEEEEEeCCCcEEEEeCCCCce-EEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEee-cCCCc
Q 004214 389 APNDSLVCTGSQDRTACVWRLPDLVS-VVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFE-GHTSS 466 (768)
Q Consensus 389 s~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~-~~~~~ 466 (768)
..++..++.+..-..|.+|.+....+ ...+..|..++.|..+++...-+++++. ..+.+|+.....+-..|. ||...
T Consensus 180 ~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~cfaf~~g~kk~ 258 (933)
T KOG2114|consen 180 RSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPCFAFEVGEKKE 258 (933)
T ss_pred ecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecC-ceEEEEcCCCcceeeeecCCCeEE
Confidence 99888733333346799999874442 4447778889999999986664555544 569999988766667776 66554
Q ss_pred E
Q 004214 467 V 467 (768)
Q Consensus 467 v 467 (768)
.
T Consensus 259 ~ 259 (933)
T KOG2114|consen 259 M 259 (933)
T ss_pred E
Confidence 3
No 327
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.45 E-value=0.00022 Score=75.50 Aligned_cols=211 Identities=12% Similarity=-0.009 Sum_probs=126.5
Q ss_pred CCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeC---C-CeEEEEeCCCCCCCCcccccc
Q 004214 295 SGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSS---D-HTIKVWSFDGLSDDAEQPMNL 370 (768)
Q Consensus 295 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~---d-g~i~iwd~~~~~~~~~~~~~~ 370 (768)
+++.+..+.-..+.+.+.|..+.+....+.-.. ....+.++|+|+. +++.+. . +++..-+....
T Consensus 203 DGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~-afvTsyNsE~G~tl~em~a~e~---------- 270 (635)
T PRK02888 203 DGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKY-AFSTCYNSEEGVTLAEMMAAER---------- 270 (635)
T ss_pred CCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECCCCCE-EEEeccCcccCcceeeeccccC----------
Confidence 444433344445677788888877666554322 4466788888774 444432 1 12222221100
Q ss_pred ceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC-----CceEEEEeccCCCeEEEEEccCCCEEEEeeC-CC
Q 004214 371 KAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPD-----LVSVVTFRGHKRGIWSVEFSPVDQVVITASG-DK 444 (768)
Q Consensus 371 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~-----~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~-d~ 444 (768)
.....+ .-.. .-++.++|++...+ ++.|.+.|..+ .+.+..+. -....+.+.++|||+++++++. +.
T Consensus 271 d~~vvf--ni~~--iea~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~ 343 (635)
T PRK02888 271 DWVVVF--NIAR--IEEAVKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSP 343 (635)
T ss_pred ceEEEE--chHH--HHHhhhCCCEEEEC--CCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCC
Confidence 000000 0000 01334577776663 57899999988 34444444 5567789999999998877664 89
Q ss_pred cEEEEeCCCCce------------eEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCC----------CeEEEEe
Q 004214 445 TIKIWSISDGSC------------LKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRT----------GECIATY 502 (768)
Q Consensus 445 ~i~iwd~~~~~~------------~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~----------~~~~~~~ 502 (768)
+|.|+|+.+.+. +.+.+- .......+|.++|+...|-.-|..|..|++.+ ...+..+
T Consensus 344 tVSVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~ 422 (635)
T PRK02888 344 TVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKL 422 (635)
T ss_pred cEEEEEChhhhhhhhccCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecc
Confidence 999999987542 333332 22334578999998888888899999999876 3455555
Q ss_pred ccCCCcEEE-----EEEcCCCCEEEEEe
Q 004214 503 DKHEDKIWA-----LAVGKKTEMFATGG 525 (768)
Q Consensus 503 ~~~~~~v~~-----l~~s~~~~~l~s~~ 525 (768)
..|-.+--- =.-.|+|++|++..
T Consensus 423 dV~y~pgh~~~~~g~t~~~dgk~l~~~n 450 (635)
T PRK02888 423 DVHYQPGHNHASMGETKEADGKWLVSLN 450 (635)
T ss_pred cCCCccceeeecCCCcCCCCCCEEEEcc
Confidence 544433211 12367888888764
No 328
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.43 E-value=0.00037 Score=75.31 Aligned_cols=241 Identities=11% Similarity=0.083 Sum_probs=139.4
Q ss_pred CEEEEEeCCCcEEEEECCCceeeeeeeCCccc-----eEEEeeeeecCCCEEEEEEe---------CCCeEEEEeCCCce
Q 004214 253 QYLAVATNIEQVQVYDLSSMSCSYVLAGHSEI-----VLCLDTCALSSGKILIVTGS---------KDNSVRLWDSESRC 318 (768)
Q Consensus 253 ~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~-----v~~l~~~~~~~~~~~l~~~~---------~dg~i~iwd~~~~~ 318 (768)
..+++++.++.|+-+|..+++.+......... +.+- ..-.+.. ++.++ .+|.+..+|..+++
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ss---P~v~~~~-v~vg~~~~~~~~~~~~g~v~alD~~TG~ 186 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGA---PTIVKKL-VIIGSSGAEFFACGVRGALRAYDVETGK 186 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCC---CEEECCE-EEEeccccccccCCCCcEEEEEECCCCc
Confidence 68888889999999999999988776543221 1110 1111233 44443 36889999999998
Q ss_pred EEEeeecccC--------------------cE-EEEEEecCCCcEEEEEeCCC------------------eEEEEeCCC
Q 004214 319 CVGVGTGHMG--------------------AV-GAVAFSKKLQNFLVSGSSDH------------------TIKVWSFDG 359 (768)
Q Consensus 319 ~~~~~~~~~~--------------------~v-~~~~~~~~~~~~l~s~~~dg------------------~i~iwd~~~ 359 (768)
.+..+..... .+ ...++.+.+. .++.++.++ .|.-+|..+
T Consensus 187 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g-~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~t 265 (488)
T cd00216 187 LLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTN-LVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADT 265 (488)
T ss_pred eeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCC-EEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCC
Confidence 8876654211 01 1233333333 566776555 677777765
Q ss_pred CCCCCccccccceeeEeeccCCCe-EEEEEccCCC---EEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCC
Q 004214 360 LSDDAEQPMNLKAKAVVAAHGKDI-NSLAVAPNDS---LVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQ 435 (768)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~s~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~ 435 (768)
+...-.................++ ..+. .-++. .+++++.+|.+..+|..+++.+...... ...++.+| .
T Consensus 266 G~~~W~~~~~~~~~~~~~~~s~p~~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~--~ 339 (488)
T cd00216 266 GKVKWFYQTTPHDLWDYDGPNQPSLADIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP--G 339 (488)
T ss_pred CCEEEEeeCCCCCCcccccCCCCeEEecc-ccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC--c
Confidence 532111000000000000000000 0010 11333 6788889999999999999988765422 11233344 2
Q ss_pred EEEEe------------------eCCCcEEEEeCCCCceeEEeecCC--------CcEEEEEEEeCCCEEEEEeCCCcEE
Q 004214 436 VVITA------------------SGDKTIKIWSISDGSCLKTFEGHT--------SSVLRASFLTRGAQIVSCGADGLVK 489 (768)
Q Consensus 436 ~l~t~------------------~~d~~i~iwd~~~~~~~~~~~~~~--------~~v~~~~~s~~~~~l~s~~~dg~i~ 489 (768)
.++.+ ..+|.+.-.|+.+|+.+-+..... .+...-.....+..|+.++.||.|+
T Consensus 340 ~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ 419 (488)
T cd00216 340 LVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFR 419 (488)
T ss_pred eEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEE
Confidence 23222 235788889999998887765321 1111111223567899999999999
Q ss_pred EEECCCCeEEEEecc
Q 004214 490 LWTVRTGECIATYDK 504 (768)
Q Consensus 490 iwd~~~~~~~~~~~~ 504 (768)
.+|.++|+.+.+++.
T Consensus 420 ald~~tG~~lW~~~~ 434 (488)
T cd00216 420 AFDATTGKELWKFRT 434 (488)
T ss_pred EEECCCCceeeEEEC
Confidence 999999999988864
No 329
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.42 E-value=7e-06 Score=86.45 Aligned_cols=180 Identities=14% Similarity=0.189 Sum_probs=128.1
Q ss_pred CcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEE
Q 004214 328 GAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVW 407 (768)
Q Consensus 328 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~ 407 (768)
..++|++++.. +++-|+.+|.|++++..... .....|... ..+|.++++++.||+|.|.
T Consensus 40 D~is~~av~~~---~~~~GtH~g~v~~~~~~~~~------------~~~~~~s~~------~~~Gey~asCS~DGkv~I~ 98 (846)
T KOG2066|consen 40 DAISCCAVHDK---FFALGTHRGAVYLTTCQGNP------------KTNFDHSSS------ILEGEYVASCSDDGKVVIG 98 (846)
T ss_pred hHHHHHHhhcc---eeeeccccceEEEEecCCcc------------ccccccccc------ccCCceEEEecCCCcEEEe
Confidence 45666666643 79999999999999886431 111222222 5689999999999999999
Q ss_pred eCCCCceEEEEeccCCCeEEEEEccC-----CCEEEEeeCCCcEEEEeCC---CCceeEEeecCCCcEEEEEEEeCCCEE
Q 004214 408 RLPDLVSVVTFRGHKRGIWSVEFSPV-----DQVVITASGDKTIKIWSIS---DGSCLKTFEGHTSSVLRASFLTRGAQI 479 (768)
Q Consensus 408 d~~~~~~~~~~~~~~~~v~~v~~s~~-----~~~l~t~~~d~~i~iwd~~---~~~~~~~~~~~~~~v~~~~~s~~~~~l 479 (768)
.+-+.+...++. ...++.+++++|+ .+.+++|+.-| +.++.-+ ....+ .+....++|.++.|. |+++
T Consensus 99 sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~~eG~I~~i~W~--g~lI 173 (846)
T KOG2066|consen 99 SLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSEGEGPIHSIKWR--GNLI 173 (846)
T ss_pred eccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eeecCccceEEEEec--CcEE
Confidence 998888777666 5689999999998 56888998888 7776532 11222 355567899999986 7799
Q ss_pred EEEeCCCcEEEEECCCCeEEEEeccCCCcE------EEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 004214 480 VSCGADGLVKLWTVRTGECIATYDKHEDKI------WALAVGKKTEMFATGGSDALVNLWHDS 536 (768)
Q Consensus 480 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v------~~l~~s~~~~~l~s~~~dg~v~vw~~~ 536 (768)
|-++.+| |+|||+.+.+.+..+......+ ..+.|.++.+.++--+ .+|.|..+.
T Consensus 174 AWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~--d~v~i~~I~ 233 (846)
T KOG2066|consen 174 AWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWG--DSVKICSIK 233 (846)
T ss_pred EEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEecC--CeEEEEEEe
Confidence 9998888 9999999998888776443332 3577776665444322 245555554
No 330
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.41 E-value=0.00013 Score=70.45 Aligned_cols=203 Identities=15% Similarity=0.146 Sum_probs=140.0
Q ss_pred EEEEEEecCCCcEEEEEeCCCe-EEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeC-----CCc
Q 004214 330 VGAVAFSKKLQNFLVSGSSDHT-IKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ-----DRT 403 (768)
Q Consensus 330 v~~~~~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-----dg~ 403 (768)
...++.+|.....++.+-.-|+ ..+||..++...... ....-..+.+| -+||+||++|++.-. .|.
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~--~a~~gRHFyGH------g~fs~dG~~LytTEnd~~~g~G~ 78 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRL--WAPPGRHFYGH------GVFSPDGRLLYTTENDYETGRGV 78 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEE--cCCCCCEEecC------EEEcCCCCEEEEeccccCCCcEE
Confidence 3456777866666677766665 556888765422111 11122233333 579999999998643 478
Q ss_pred EEEEeCC-CCceEEEEeccCCCeEEEEEccCCCEEEEeeC------------------CCcEEEEeCCCCceeEEee---
Q 004214 404 ACVWRLP-DLVSVVTFRGHKRGIWSVEFSPVDQVVITASG------------------DKTIKIWSISDGSCLKTFE--- 461 (768)
Q Consensus 404 i~i~d~~-~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~------------------d~~i~iwd~~~~~~~~~~~--- 461 (768)
|-|||.. +.+.+..+..|.-.-..+.+.|||+.|+++-. +-++...|..+|+.+.+..
T Consensus 79 IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~ 158 (305)
T PF07433_consen 79 IGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPP 158 (305)
T ss_pred EEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCc
Confidence 9999998 77888899988888889999999987777632 2346667788888887733
Q ss_pred -cCCCcEEEEEEEeCCCEEEEEeCCCc-------EEEEECCCCeEEEEec-------cCCCcEEEEEEcCCCCEEEEEe-
Q 004214 462 -GHTSSVLRASFLTRGAQIVSCGADGL-------VKLWTVRTGECIATYD-------KHEDKIWALAVGKKTEMFATGG- 525 (768)
Q Consensus 462 -~~~~~v~~~~~s~~~~~l~s~~~dg~-------i~iwd~~~~~~~~~~~-------~~~~~v~~l~~s~~~~~l~s~~- 525 (768)
-|..+|..+++.++|..++..-..|. |-+++ .++.+..+. ...+-+-++++++++..+++.+
T Consensus 159 ~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsP 236 (305)
T PF07433_consen 159 DLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHR--RGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSP 236 (305)
T ss_pred cccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEc--CCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECC
Confidence 47789999999999987776655442 34443 333233332 2346688999999998876555
Q ss_pred CCCcEEEEEcCCHHHHH
Q 004214 526 SDALVNLWHDSTAAERE 542 (768)
Q Consensus 526 ~dg~v~vw~~~~~~~~~ 542 (768)
..|.+.+||..++....
T Consensus 237 rGg~~~~~d~~tg~~~~ 253 (305)
T PF07433_consen 237 RGGRVAVWDAATGRLLG 253 (305)
T ss_pred CCCEEEEEECCCCCEee
Confidence 67789999998876543
No 331
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.41 E-value=0.00016 Score=78.13 Aligned_cols=280 Identities=11% Similarity=0.105 Sum_probs=162.2
Q ss_pred CCEEEEEeCCCcEEEEECCCceeeeeeeCCcc------ceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeec
Q 004214 252 EQYLAVATNIEQVQVYDLSSMSCSYVLAGHSE------IVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTG 325 (768)
Q Consensus 252 ~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~------~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 325 (768)
+..+.+++.++.++-+|..+++.......... .+..-- .....++. ++.++.+|.|+.+|..+++.+..+..
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g-~~~~~~~~-V~v~~~~g~v~AlD~~TG~~~W~~~~ 138 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRG-VAYWDPRK-VFFGTFDGRLVALDAETGKQVWKFGN 138 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCC-cEEccCCe-EEEecCCCeEEEEECCCCCEeeeecC
Confidence 34667777789999999999988776643322 010000 01112144 77888899999999999998877654
Q ss_pred ccCc-----E-EEEEEecCCCcEEEEEe---------CCCeEEEEeCCCCCCCCccccccceeeEee---------ccC-
Q 004214 326 HMGA-----V-GAVAFSKKLQNFLVSGS---------SDHTIKVWSFDGLSDDAEQPMNLKAKAVVA---------AHG- 380 (768)
Q Consensus 326 ~~~~-----v-~~~~~~~~~~~~l~s~~---------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~---------~~~- 380 (768)
.... + .+..+.. . +++.++ .+|.+..+|..++...-............. .+.
T Consensus 139 ~~~~~~~~~i~ssP~v~~--~-~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g 215 (488)
T cd00216 139 NDQVPPGYTMTGAPTIVK--K-LVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGG 215 (488)
T ss_pred CCCcCcceEecCCCEEEC--C-EEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCC
Confidence 3221 1 1122222 2 344443 357788888776532211110000000000 000
Q ss_pred CCe-EEEEEccCCCEEEEEeCCC------------------cEEEEeCCCCceEEEEeccCCCeE------EEEEc----
Q 004214 381 KDI-NSLAVAPNDSLVCTGSQDR------------------TACVWRLPDLVSVVTFRGHKRGIW------SVEFS---- 431 (768)
Q Consensus 381 ~~i-~~~~~s~~~~~l~~~~~dg------------------~i~i~d~~~~~~~~~~~~~~~~v~------~v~~s---- 431 (768)
..+ .+.++++.+..+++++.++ .+.-+|..+++....++.-....+ ...+.
T Consensus 216 ~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~ 295 (488)
T cd00216 216 GTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKP 295 (488)
T ss_pred CCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccc
Confidence 111 2345566667788887665 699999999999887653211111 11111
Q ss_pred cCCC---EEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEE------------------eCCCcEEE
Q 004214 432 PVDQ---VVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSC------------------GADGLVKL 490 (768)
Q Consensus 432 ~~~~---~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~------------------~~dg~i~i 490 (768)
-++. .+++++.+|.+...|..+|+.+....... ..+..+| ..++.+ ..+|.+.-
T Consensus 296 ~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~---~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~A 370 (488)
T cd00216 296 KDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE---QPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAA 370 (488)
T ss_pred cCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec---cccccCC--ceEEEccccccccCcccccCCCCCCCceEEEE
Confidence 1233 67888889999999999999987765211 1122333 233322 24678999
Q ss_pred EECCCCeEEEEeccCC--------CcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCHHHH
Q 004214 491 WTVRTGECIATYDKHE--------DKIWALAVGKKTEMFATGGSDALVNLWHDSTAAER 541 (768)
Q Consensus 491 wd~~~~~~~~~~~~~~--------~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~~~~ 541 (768)
.|..+|+.+.+..... .+...-.....+..|++++.||.|+.+|..+++..
T Consensus 371 lD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~l 429 (488)
T cd00216 371 LDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKEL 429 (488)
T ss_pred EeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCcee
Confidence 9999999888775331 11111011125678888999999999999888654
No 332
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.37 E-value=3.1e-05 Score=81.78 Aligned_cols=170 Identities=15% Similarity=0.175 Sum_probs=118.2
Q ss_pred EEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeec
Q 004214 299 LIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAA 378 (768)
Q Consensus 299 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 378 (768)
+++-|+.+|.|++++..... .....|... ..+|. ++++|+.||+|.+-.+-+... .....
T Consensus 51 ~~~~GtH~g~v~~~~~~~~~--~~~~~~s~~------~~~Ge-y~asCS~DGkv~I~sl~~~~~-----------~~~~d 110 (846)
T KOG2066|consen 51 FFALGTHRGAVYLTTCQGNP--KTNFDHSSS------ILEGE-YVASCSDDGKVVIGSLFTDDE-----------ITQYD 110 (846)
T ss_pred eeeeccccceEEEEecCCcc--ccccccccc------ccCCc-eEEEecCCCcEEEeeccCCcc-----------ceeEe
Confidence 59999999999999876543 233334333 44544 899999999999987764421 11233
Q ss_pred cCCCeEEEEEccC-----CCEEEEEeCCCcEEEEeCCC--CceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeC
Q 004214 379 HGKDINSLAVAPN-----DSLVCTGSQDRTACVWRLPD--LVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSI 451 (768)
Q Consensus 379 ~~~~i~~~~~s~~-----~~~l~~~~~dg~i~i~d~~~--~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~ 451 (768)
...++.+++++|+ .+.+++|+.-| +.++.-.= .+....+....++|.++.|. |+++|=++.+| |+|||+
T Consensus 111 f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~ 186 (846)
T KOG2066|consen 111 FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDT 186 (846)
T ss_pred cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEEEec
Confidence 4578999999997 57899999888 77775321 11222455667899999998 88888887766 999999
Q ss_pred CCCceeEEeecCCCcE------EEEEEEeCCCEEEEEeCCCcEEEEECC
Q 004214 452 SDGSCLKTFEGHTSSV------LRASFLTRGAQIVSCGADGLVKLWTVR 494 (768)
Q Consensus 452 ~~~~~~~~~~~~~~~v------~~~~~s~~~~~l~s~~~dg~i~iwd~~ 494 (768)
.+++.+..++.....+ ..+.|.++. .|+.|-. .+|+|..++
T Consensus 187 ~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~-~LVIGW~-d~v~i~~I~ 233 (846)
T KOG2066|consen 187 PTRQRLTNIPPPSQSVRPELFPPHLHWQDED-RLVIGWG-DSVKICSIK 233 (846)
T ss_pred cccceeeccCCCCCCCCcccCCCceEecCCC-eEEEecC-CeEEEEEEe
Confidence 9988887776433332 346676654 4555443 468888877
No 333
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.36 E-value=0.00038 Score=73.75 Aligned_cols=149 Identities=12% Similarity=0.073 Sum_probs=98.0
Q ss_pred CeEEEEEccCCCEEEEEeCCC----cEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCC----
Q 004214 382 DINSLAVAPNDSLVCTGSQDR----TACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISD---- 453 (768)
Q Consensus 382 ~i~~~~~s~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~---- 453 (768)
....++++|+|+++++.+.+. ++...+..+...+..+... .+ -.+.++|++...+ ++.|.+.|..+
T Consensus 236 npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~--~i--ea~vkdGK~~~V~--gn~V~VID~~t~~~~ 309 (635)
T PRK02888 236 NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA--RI--EEAVKAGKFKTIG--GSKVPVVDGRKAANA 309 (635)
T ss_pred CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH--HH--HHhhhCCCEEEEC--CCEEEEEECCccccC
Confidence 446678899999998886432 2333332222211111110 00 1234567776663 57899999988
Q ss_pred C-ceeEEeecCCCcEEEEEEEeCCCEEEEEeC-CCcEEEEECCCCeE------------EEEeccCCCcEEEEEEcCCCC
Q 004214 454 G-SCLKTFEGHTSSVLRASFLTRGAQIVSCGA-DGLVKLWTVRTGEC------------IATYDKHEDKIWALAVGKKTE 519 (768)
Q Consensus 454 ~-~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-dg~i~iwd~~~~~~------------~~~~~~~~~~v~~l~~s~~~~ 519 (768)
+ ..+..+. -......+.++|||+++++++. +.+|.|.|+.+.+. +..... .......+|.++|.
T Consensus 310 ~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~ 387 (635)
T PRK02888 310 GSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGN 387 (635)
T ss_pred CcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-CCCcceEEECCCCC
Confidence 3 4444444 5566778999999999877665 88999999987552 444433 22334578999999
Q ss_pred EEEEEeCCCcEEEEEcCCH
Q 004214 520 MFATGGSDALVNLWHDSTA 538 (768)
Q Consensus 520 ~l~s~~~dg~v~vw~~~~~ 538 (768)
...|-.-|..|..|++.+.
T Consensus 388 aytslf~dsqv~kwn~~~a 406 (635)
T PRK02888 388 AYTTLFLDSQIVKWNIEAA 406 (635)
T ss_pred EEEeEeecceeEEEehHHH
Confidence 9999999999999998753
No 334
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.31 E-value=0.00084 Score=69.26 Aligned_cols=237 Identities=14% Similarity=0.137 Sum_probs=119.4
Q ss_pred cEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCe-------------------------------------------eEE
Q 004214 32 VVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK-------------------------------------------CVA 68 (768)
Q Consensus 32 ~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~-------------------------------------------~~~ 68 (768)
.|+++.|+++..- |+.|...|.|.||.+...+ ++.
T Consensus 3 ~v~~vs~a~~t~E--lav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~ 80 (395)
T PF08596_consen 3 SVTHVSFAPETLE--LAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLT 80 (395)
T ss_dssp -EEEEEEETTTTE--EEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEE
T ss_pred eEEEEEecCCCce--EEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchh
Confidence 5888999997666 8999999999998653211 112
Q ss_pred EecCccceeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeeeecce---------eEeeEEecCCCCCccccccccch
Q 004214 69 TLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYE---------MVEAVCAIPPGSAFDSFLSSYNQ 139 (768)
Q Consensus 69 ~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~---------~v~~~~~~~~~~~~~~~~~~~~~ 139 (768)
-++...++|++++.|.-| +++.|..+|.+.|.|++....+..-...+ .+..+.|..-.
T Consensus 81 l~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~------------ 147 (395)
T PF08596_consen 81 LLDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMT------------ 147 (395)
T ss_dssp EE---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE------------
T ss_pred heeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEe------------
Confidence 233346789999998544 99999999999999999888777644333 11122111000
Q ss_pred hhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEee
Q 004214 140 QTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTT 219 (768)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~ 219 (768)
...+...... +++++..|.+..|.+
T Consensus 148 ---~~~D~ySSi~----------------------------------------------------L~vGTn~G~v~~fkI 172 (395)
T PF08596_consen 148 ---LGGDGYSSIC----------------------------------------------------LLVGTNSGNVLTFKI 172 (395)
T ss_dssp ----TTSSSEEEE----------------------------------------------------EEEEETTSEEEEEEE
T ss_pred ---cCCCcccceE----------------------------------------------------EEEEeCCCCEEEEEE
Confidence 0000011123 345555555555555
Q ss_pred ccCcccceeeEEEeeecccCCceeEEEEecC--------------------CCCEEEEEeCCCcEEEEECCCceeeeeee
Q 004214 220 VEVPEKKMELILSKRLVGYNEEILDLKFLGE--------------------EEQYLAVATNIEQVQVYDLSSMSCSYVLA 279 (768)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--------------------~~~~l~~~~~~~~i~i~d~~~~~~~~~~~ 279 (768)
..................+.++|..+..... .-+-+++......++++...+.+......
T Consensus 173 lp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~ 252 (395)
T PF08596_consen 173 LPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSF 252 (395)
T ss_dssp EE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE-
T ss_pred ecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCCCcccceee
Confidence 4322222222222222334445554443311 11234555556899999998877665544
Q ss_pred CCccceEEEeeeee----cCCCEEEEEEeCCCeEEEEeCCCceEEEeeeccc----CcEEEEEEecCCC
Q 004214 280 GHSEIVLCLDTCAL----SSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHM----GAVGAVAFSKKLQ 340 (768)
Q Consensus 280 ~~~~~v~~l~~~~~----~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~v~~~~~~~~~~ 340 (768)
...+.|-..++. ......|++-..+|.|+++.+..-+.+....-+. ..+...+++++|.
T Consensus 253 --~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gd 319 (395)
T PF08596_consen 253 --DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGD 319 (395)
T ss_dssp --SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-
T ss_pred --ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCCC
Confidence 333333322232 2345558888999999999999877776655432 2233445566655
No 335
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.27 E-value=0.00034 Score=73.17 Aligned_cols=285 Identities=15% Similarity=0.199 Sum_probs=157.2
Q ss_pred ccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCC
Q 004214 237 GYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES 316 (768)
Q Consensus 237 ~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 316 (768)
+.......+......+.+++.|+..|.+++|+...+.....-.+-...+.+.. ..++...++|+|+..|.|.++-++.
T Consensus 30 ~~~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~--~vs~~e~lvAagt~~g~V~v~ql~~ 107 (726)
T KOG3621|consen 30 GFFPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVR--SVSSVEYLVAAGTASGRVSVFQLNK 107 (726)
T ss_pred ccCcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEE--EecchhHhhhhhcCCceEEeehhhc
Confidence 33334444455556888999999999999999887765544332244444443 4455556699999999999998765
Q ss_pred ceEEE---e---eecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEcc
Q 004214 317 RCCVG---V---GTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP 390 (768)
Q Consensus 317 ~~~~~---~---~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 390 (768)
+.+.. . -..|...|++++|++++. .+++|...|.|.+-.++... .-......+......|..+...
T Consensus 108 ~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~-k~ysGD~~Gkv~~~~L~s~~------~~~~~~q~il~~ds~IVQlD~~- 179 (726)
T KOG3621|consen 108 ELPRDLDYVTPCDKSHKCRVTALEWSKNGM-KLYSGDSQGKVVLTELDSRQ------AFLSKSQEILSEDSEIVQLDYL- 179 (726)
T ss_pred cCCCcceeeccccccCCceEEEEEeccccc-EEeecCCCceEEEEEechhh------hhccccceeeccCcceEEeecc-
Confidence 32211 1 124788999999999977 69999999999998876410 0111222223344556555544
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCc--eEEEEeccCC-CeEEEEEccC-----CCEEEEeeCCCcEEEEeCC-CCceeEEee
Q 004214 391 NDSLVCTGSQDRTACVWRLPDLV--SVVTFRGHKR-GIWSVEFSPV-----DQVVITASGDKTIKIWSIS-DGSCLKTFE 461 (768)
Q Consensus 391 ~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~-~v~~v~~s~~-----~~~l~t~~~d~~i~iwd~~-~~~~~~~~~ 461 (768)
++.+|++... ...+++.+... .+..-. ..+ .-...+|-|. ...|+++ . -..|+|..+ .|..+++..
T Consensus 180 q~~LLVStl~--r~~Lc~tE~eti~QIG~k~-R~~~~~~GACF~~g~~~~q~~~Iyca-R-PG~RlWead~~G~V~~Thq 254 (726)
T KOG3621|consen 180 QSYLLVSTLT--RCILCQTEAETITQIGKKP-RKSLIDFGACFFPGQCKAQKPQIYCA-R-PGLRLWEADFAGEVIKTHQ 254 (726)
T ss_pred cceehHhhhh--hhheeecchhHHHHhcCCC-cCCccccceEEeeccccCCCceEEEe-c-CCCceEEeecceeEEEeee
Confidence 3333333332 23344443322 221111 111 1223344442 2344443 3 336777654 244444332
Q ss_pred -------------cCCC----------------cEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEE
Q 004214 462 -------------GHTS----------------SVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWAL 512 (768)
Q Consensus 462 -------------~~~~----------------~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l 512 (768)
.+.. ....+.+-. +..+++-+.-| |+|+|..+...+.-.. ....|..+
T Consensus 255 fk~ala~~p~p~i~~~s~esp~~~~~~~~~q~ls~~k~~~l~-~~~vLa~te~G-iyv~d~~~~~v~l~se-~~~DI~dV 331 (726)
T KOG3621|consen 255 FKDALARPPAPEIPIRSLESPNQRSLPSGTQHLSLSKSSTLH-SDRVLAWTEVG-IYVFDSNNSQVYLWSE-GGHDILDV 331 (726)
T ss_pred hhhhhccCCCCcccCCCcCCccccCCCCCccccccceeEEee-cceEEEeecce-EEEEEeccceEEEeec-CCCceeEE
Confidence 0000 111111112 22444444445 8888887766655443 23445444
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEcCCHHHH
Q 004214 513 AVGKKTEMFATGGSDALVNLWHDSTAAER 541 (768)
Q Consensus 513 ~~s~~~~~l~s~~~dg~v~vw~~~~~~~~ 541 (768)
+ .+|+-|+.-..||.+++..+.+.+..
T Consensus 332 s--~~~neiFvL~~d~~l~~~sv~s~qr~ 358 (726)
T KOG3621|consen 332 S--HCGNEIFVLNLDRGLKVESVASRQRK 358 (726)
T ss_pred e--ecCceEEEEecCCceeEEEeehhHHH
Confidence 4 45666777777888888877765443
No 336
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.22 E-value=0.0024 Score=66.07 Aligned_cols=297 Identities=17% Similarity=0.126 Sum_probs=152.8
Q ss_pred CCCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEE-ecCc-------------
Q 004214 8 ADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVAT-LDKH------------- 73 (768)
Q Consensus 8 ~dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~-l~~h------------- 73 (768)
..+.+.|||+.+++......+ ...+....|||+|+. +|-. .++.|.+++..++...+. ..|-
T Consensus 21 ~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~--~~~v-~~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvye 96 (353)
T PF00930_consen 21 FKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKY--IAFV-RDNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYE 96 (353)
T ss_dssp EEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTE--EEEE-ETTEEEEESSTTSEEEESES--TTTEEESB--HHHH
T ss_pred cceeEEEEecCCCceEECcCC-ccccccceeecCCCe--eEEE-ecCceEEEECCCCCeEEeccccceeEEcCccceecc
Confidence 356789999999985544333 778899999999987 5544 357899999887754422 1220
Q ss_pred ---cceeEEEEEcCCCCEEEEEeCC-CeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCc
Q 004214 74 ---FSRVTSMAITSDGSTLISAGRD-KVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSL 149 (768)
Q Consensus 74 ---~~~V~~l~fs~d~~~L~s~~~d-g~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (768)
-+.-..+-|||||++|+....| ..|..+.+........ ....+..+..-..|...
T Consensus 97 EEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~--~yp~~~~~~YPk~G~~n------------------- 155 (353)
T PF00930_consen 97 EEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDS--QYPEVESIRYPKAGDPN------------------- 155 (353)
T ss_dssp HHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTE--SS-EEEEEE--BTTS---------------------
T ss_pred ccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccc--cCCcccccccCCCCCcC-------------------
Confidence 1123568899999999977643 3343333211100000 00112222221111100
Q ss_pred ceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEec--C-eE--EEEeeccCcc
Q 004214 150 EIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTAD--Q-QL--LLYTTVEVPE 224 (768)
Q Consensus 150 ~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d--g-~i--~~~~~~~~~~ 224 (768)
..-.+.++++.++........ ........-+..+.+.+++..+++...+ + .+ .+++...
T Consensus 156 --------p~v~l~v~~~~~~~~~~~~~~-----~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~t--- 219 (353)
T PF00930_consen 156 --------PRVSLFVVDLASGKTTELDPP-----NSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDAST--- 219 (353)
T ss_dssp ---------EEEEEEEESSSTCCCEE--------HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECT---
T ss_pred --------CceEEEEEECCCCcEEEeeec-----cccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCC---
Confidence 011466678877744311111 0111223556677788887755444322 2 22 2333322
Q ss_pred cceeeEEEeeecccCCceeEEEEe-cCCCCEEEEEeCCCc--EEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEE
Q 004214 225 KKMELILSKRLVGYNEEILDLKFL-GEEEQYLAVATNIEQ--VQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIV 301 (768)
Q Consensus 225 ~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~l~~~~~~~~--i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~ 301 (768)
............+.-..-....|. +.+..++.....+|. |.+++...+... .+....-.|..+. .+...++.+.+
T Consensus 220 g~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~-~lT~G~~~V~~i~-~~d~~~~~iyf 297 (353)
T PF00930_consen 220 GETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPR-QLTSGDWEVTSIL-GWDEDNNRIYF 297 (353)
T ss_dssp TTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEE-ESS-SSS-EEEEE-EEECTSSEEEE
T ss_pred CceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccccccee-ccccCceeecccc-eEcCCCCEEEE
Confidence 222233333333444444456665 566667666667665 445566666644 4444445554432 25566777677
Q ss_pred EEeCCC----eEEEEeCC-CceEEEeeecccCcEEEEEEecCCCcEEEEEeC
Q 004214 302 TGSKDN----SVRLWDSE-SRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSS 348 (768)
Q Consensus 302 ~~~~dg----~i~iwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~ 348 (768)
++..++ .+...++. .+.... +....+.-..+.|+|+++.++.+++.
T Consensus 298 ~a~~~~p~~r~lY~v~~~~~~~~~~-LT~~~~~~~~~~~Spdg~y~v~~~s~ 348 (353)
T PF00930_consen 298 TANGDNPGERHLYRVSLDSGGEPKC-LTCEDGDHYSASFSPDGKYYVDTYSG 348 (353)
T ss_dssp EESSGGTTSBEEEEEETTETTEEEE-SSTTSSTTEEEEE-TTSSEEEEEEES
T ss_pred EecCCCCCceEEEEEEeCCCCCeEe-ccCCCCCceEEEECCCCCEEEEEEcC
Confidence 777633 56666777 554443 33333333789999998866666554
No 337
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.22 E-value=0.0024 Score=66.87 Aligned_cols=222 Identities=13% Similarity=0.125 Sum_probs=121.1
Q ss_pred ceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEE-eCCCCCC
Q 004214 284 IVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVW-SFDGLSD 362 (768)
Q Consensus 284 ~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iw-d~~~~~~ 362 (768)
....+. +.|.++. ++. ..+|...++.....+.... +.-...+|.+.+ .+++-...++|.++ ++....
T Consensus 34 ~p~~ls--~npngr~-v~V-~g~geY~iyt~~~~r~k~~-----G~g~~~vw~~~n--~yAv~~~~~~I~I~kn~~~~~- 101 (443)
T PF04053_consen 34 YPQSLS--HNPNGRF-VLV-CGDGEYEIYTALAWRNKAF-----GSGLSFVWSSRN--RYAVLESSSTIKIYKNFKNEV- 101 (443)
T ss_dssp --SEEE--E-TTSSE-EEE-EETTEEEEEETTTTEEEEE-----EE-SEEEE-TSS--EEEEE-TTS-EEEEETTEE-T-
T ss_pred CCeeEE--ECCCCCE-EEE-EcCCEEEEEEccCCccccc-----CceeEEEEecCc--cEEEEECCCeEEEEEcCcccc-
Confidence 344554 6677775 444 5588888888555444332 334467788843 47777778899996 332110
Q ss_pred CCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeC
Q 004214 363 DAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASG 442 (768)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~ 442 (768)
.. ... .+..+..+-. |.+|+..+.+ .|.+||..+++.+..+... +|..+.|+++|++++..+.
T Consensus 102 ---------~k-~i~-~~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~ 164 (443)
T PF04053_consen 102 ---------VK-SIK-LPFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTK 164 (443)
T ss_dssp ---------T-------SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S
T ss_pred ---------ce-EEc-CCcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeC
Confidence 00 000 1112333332 8888887655 8999999999999988743 4899999999999999876
Q ss_pred CCcEEEEeCCCC-----------ceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEE
Q 004214 443 DKTIKIWSISDG-----------SCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWA 511 (768)
Q Consensus 443 d~~i~iwd~~~~-----------~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 511 (768)
.++.|++.... .....+..-...|.+.+|..+ -++.+.. . .++. +-.|+.- ++..-..++.=
T Consensus 165 -~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d-~fiYtT~-~-~lkY--l~~Ge~~-~i~~ld~~~yl 237 (443)
T PF04053_consen 165 -DSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED-CFIYTTS-N-HLKY--LVNGETG-IIAHLDKPLYL 237 (443)
T ss_dssp --SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT-EEEEE-T-T-EEEE--EETTEEE-EEEE-SS--EE
T ss_pred -CeEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC-EEEEEcC-C-eEEE--EEcCCcc-eEEEcCCceEE
Confidence 46888775322 033333322567888899876 3444433 3 6766 3445432 22223456777
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEcCCHHHH
Q 004214 512 LAVGKKTEMFATGGSDALVNLWHDSTAAER 541 (768)
Q Consensus 512 l~~s~~~~~l~s~~~dg~v~vw~~~~~~~~ 541 (768)
+...|..+.+.....|+.+..+.+...+..
T Consensus 238 lgy~~~~~~ly~~Dr~~~v~~~~ld~~~~~ 267 (443)
T PF04053_consen 238 LGYLPKENRLYLIDRDGNVISYELDLSELE 267 (443)
T ss_dssp EEEETTTTEEEEE-TT--EEEEE--HHHHH
T ss_pred EEEEccCCEEEEEECCCCEEEEEECHHHHH
Confidence 788888889999999999999998876543
No 338
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.12 E-value=0.0024 Score=66.06 Aligned_cols=305 Identities=12% Similarity=0.059 Sum_probs=144.5
Q ss_pred eeCCCccEEEEE-------eCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeee
Q 004214 39 HPDTDKSLLFSG-------SDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLT 111 (768)
Q Consensus 39 spd~~~~~l~sg-------~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~ 111 (768)
|||+++.++++- +..+.+.|||+.+++....... ...+....|||+|++++-.. ++.|.+++..++....-
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l 78 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL 78 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence 577776444332 2346799999999776544433 66789999999999998886 57899999887743322
Q ss_pred eecc------------------eeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEE---EcCCc
Q 004214 112 VPTY------------------EMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMW---NADSA 170 (768)
Q Consensus 112 ~~~~------------------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iw---d~~~~ 170 (768)
.... ..-..+-|+|++..++. +.. .+..+..+ +....
T Consensus 79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~---------------------~~~-d~~~v~~~~~~~~~~~ 136 (353)
T PF00930_consen 79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAF---------------------LRF-DEREVPEYPLPDYSPP 136 (353)
T ss_dssp ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEE---------------------EEE-E-TTS-EEEEEEESSS
T ss_pred ccccceeEEcCccceeccccccccccceEECCCCCEEEE---------------------EEE-CCcCCceEEeeccCCc
Confidence 1111 01234455555543211 000 01111111 10000
Q ss_pred eeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecC
Q 004214 171 CLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGE 250 (768)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 250 (768)
.- .........+...|... ..-.+.++++...... .+...........-+..+.|.++
T Consensus 137 ~~----------------~yp~~~~~~YPk~G~~n----p~v~l~v~~~~~~~~~--~~~~~~~~~~~~~yl~~v~W~~d 194 (353)
T PF00930_consen 137 DS----------------QYPEVESIRYPKAGDPN----PRVSLFVVDLASGKTT--ELDPPNSLNPQDYYLTRVGWSPD 194 (353)
T ss_dssp TE----------------SS-EEEEEE--BTTS-------EEEEEEEESSSTCCC--EE---HHHHTSSEEEEEEEEEET
T ss_pred cc----------------cCCcccccccCCCCCcC----CceEEEEEECCCCcEE--EeeeccccCCCccCcccceecCC
Confidence 00 00011111111111111 1112344455433221 11111122334556778888865
Q ss_pred CCCEEEEEeC----CCcEEEEECCCceeeeeeeCC-ccce---EEEeeeee-cCCCEEEEEEeCCCe--EEEEeCCCceE
Q 004214 251 EEQYLAVATN----IEQVQVYDLSSMSCSYVLAGH-SEIV---LCLDTCAL-SSGKILIVTGSKDNS--VRLWDSESRCC 319 (768)
Q Consensus 251 ~~~~l~~~~~----~~~i~i~d~~~~~~~~~~~~~-~~~v---~~l~~~~~-~~~~~~l~~~~~dg~--i~iwd~~~~~~ 319 (768)
+..+++.-.+ ...+.++|..++.+...+... ...+ .... +. +++..++.....+|. |.+++...+..
T Consensus 195 ~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~--~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~ 272 (353)
T PF00930_consen 195 GKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPH--FLGPDGNEFLWISERDGYRHLYLYDLDGGKP 272 (353)
T ss_dssp TEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEE--E-TTTSSEEEEEEETTSSEEEEEEETTSSEE
T ss_pred CcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccc--cccCCCCEEEEEEEcCCCcEEEEEcccccce
Confidence 5434443332 124566777776554333211 1111 1221 33 566666777778885 44556666664
Q ss_pred EEeeecccCcE-EEEEEecCCCcEEEEEeCCC--eEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEE
Q 004214 320 VGVGTGHMGAV-GAVAFSKKLQNFLVSGSSDH--TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVC 396 (768)
Q Consensus 320 ~~~~~~~~~~v-~~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 396 (768)
. .+....-.| ..+.++++++.+.+++..++ .-.+|.+... .......+......-..+.|||++++++
T Consensus 273 ~-~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~--------~~~~~~~LT~~~~~~~~~~~Spdg~y~v 343 (353)
T PF00930_consen 273 R-QLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLD--------SGGEPKCLTCEDGDHYSASFSPDGKYYV 343 (353)
T ss_dssp E-ESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETT--------ETTEEEESSTTSSTTEEEEE-TTSSEEE
T ss_pred e-ccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeC--------CCCCeEeccCCCCCceEEEECCCCCEEE
Confidence 4 444445556 44778888777777777633 3444444321 0112222222222226899999999887
Q ss_pred EEeC
Q 004214 397 TGSQ 400 (768)
Q Consensus 397 ~~~~ 400 (768)
....
T Consensus 344 ~~~s 347 (353)
T PF00930_consen 344 DTYS 347 (353)
T ss_dssp EEEE
T ss_pred EEEc
Confidence 6543
No 339
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.10 E-value=0.0056 Score=63.50 Aligned_cols=77 Identities=9% Similarity=0.157 Sum_probs=65.0
Q ss_pred eeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCC
Q 004214 376 VAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG 454 (768)
Q Consensus 376 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~ 454 (768)
.......+.+++++|+...++.|+.||.|.+||...+... +....-..+.++|+|+|.++++|+.-|.+.+||+.-.
T Consensus 255 sipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 255 SIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 3457788999999999999999999999999998766333 2234566789999999999999999999999998543
No 340
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.09 E-value=0.0041 Score=69.55 Aligned_cols=240 Identities=13% Similarity=0.151 Sum_probs=130.1
Q ss_pred cceeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEE
Q 004214 74 FSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHF 153 (768)
Q Consensus 74 ~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (768)
...|.++.|..++.-++.+..+|.|.+-|.++......-.....|.+++|+|++. .+
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee-----------------------~l 124 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEE-----------------------LL 124 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCc-----------------------EE
Confidence 3579999999999999999999999999999887777667778899999999987 44
Q ss_pred EEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEe
Q 004214 154 ITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSK 233 (768)
Q Consensus 154 ~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~ 233 (768)
+..+..+++.+-.-.-.-+..... . ..+. + .+..+.++-...-.-+....+...........
T Consensus 125 ~liT~~~tll~mT~~f~~i~E~~L-~-----~d~~-----------~-~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~e 186 (1265)
T KOG1920|consen 125 ALITGRQTLLFMTKDFEPIAEKPL-D-----ADDE-----------R-KSKFVNVGWGRKETQFRGSEGRQAARQKIEKE 186 (1265)
T ss_pred EEEeCCcEEEEEeccccchhcccc-c-----cccc-----------c-ccccceecccccceeeecchhhhccccccccc
Confidence 444444444443221110100000 0 0000 0 01111111111111111111110000111111
Q ss_pred eec---ccCCceeEEEEecCCCCEEEE-----EeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEE--
Q 004214 234 RLV---GYNEEILDLKFLGEEEQYLAV-----ATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTG-- 303 (768)
Q Consensus 234 ~~~---~~~~~i~~~~~~~~~~~~l~~-----~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~-- 303 (768)
... ...+.-+++.|-. +++++|+ .+....|++||.+ +..-..-......-.+++ |-|.|.. +++-
T Consensus 187 k~~~~~~~~~~~~~IsWRg-Dg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~Ls--WkPsgs~-iA~iq~ 261 (1265)
T KOG1920|consen 187 KALEQIEQDDHKTSISWRG-DGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLS--WKPSGSL-IAAIQC 261 (1265)
T ss_pred ccccchhhccCCceEEEcc-CCcEEEEEEEeccCCceeEEEeccc-chhhcccCccccccccee--ecCCCCe-Eeeeee
Confidence 111 1233345677764 6778887 3334799999987 433322222223334554 5566654 5554
Q ss_pred -eCCCeEEEEeCCC---ceEEEeeecccCcEEEEEEecCCCcEEEE---EeCCCeEEEEeCCCC
Q 004214 304 -SKDNSVRLWDSES---RCCVGVGTGHMGAVGAVAFSKKLQNFLVS---GSSDHTIKVWSFDGL 360 (768)
Q Consensus 304 -~~dg~i~iwd~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~s---~~~dg~i~iwd~~~~ 360 (768)
++|+.|.+|.-+. +.....+.....++..++|+.++. +|++ ......|++|-+.+.
T Consensus 262 ~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sd-iLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 262 KTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSD-ILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred cCCCCcEEEEecCCccccccccCCcccccchheeeecCCCC-ceeeeecccccceEEEEEecCe
Confidence 3456788887543 222222333445589999999866 5665 444555999987653
No 341
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.08 E-value=0.0037 Score=64.54 Aligned_cols=194 Identities=14% Similarity=0.117 Sum_probs=105.9
Q ss_pred ccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeee--C------CccceEEEeeeeec--CCC---EEEEEE
Q 004214 237 GYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLA--G------HSEIVLCLDTCALS--SGK---ILIVTG 303 (768)
Q Consensus 237 ~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~--~------~~~~v~~l~~~~~~--~~~---~~l~~~ 303 (768)
...++|+.++.+ +-.++|+|..+|.+.|.|++....+..-. . ....++++.|.... .+. .++++|
T Consensus 84 ~~~g~vtal~~S--~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 84 AKQGPVTALKNS--DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp --S-SEEEEEE---BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred ccCCcEeEEecC--CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 346788999886 66699999999999999998887766521 1 23456677644322 222 568999
Q ss_pred eCCCeEEEEeCC--C-ceE----EEeeecccCcEEEEE-EecCCC-------------------cEEEEEeCCCeEEEEe
Q 004214 304 SKDNSVRLWDSE--S-RCC----VGVGTGHMGAVGAVA-FSKKLQ-------------------NFLVSGSSDHTIKVWS 356 (768)
Q Consensus 304 ~~dg~i~iwd~~--~-~~~----~~~~~~~~~~v~~~~-~~~~~~-------------------~~l~s~~~dg~i~iwd 356 (768)
+..|.+.+|.+. . +.. ......+.++|..+. ++.+.. +-++....+..++++.
T Consensus 162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~ 241 (395)
T PF08596_consen 162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFK 241 (395)
T ss_dssp ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-
T ss_pred eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEe
Confidence 999999999764 1 221 112224556666555 322210 1244445567899998
Q ss_pred CCCCCCCCccccccceeeEeeccCCCeEEEEE-----ccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccC----CCeEE
Q 004214 357 FDGLSDDAEQPMNLKAKAVVAAHGKDINSLAV-----APNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHK----RGIWS 427 (768)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-----s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----~~v~~ 427 (768)
..... .............++.+ ...+..|++-..+|.+++|.++..+.+..+.-.. ..+..
T Consensus 242 ~~~~k----------~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ 311 (395)
T PF08596_consen 242 PPKSK----------GAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSS 311 (395)
T ss_dssp TT-------------EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT
T ss_pred CCCCc----------ccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccc
Confidence 76431 11111111112233344 2356778888999999999999999988877532 23445
Q ss_pred EEEccCCCEEEEeeC
Q 004214 428 VEFSPVDQVVITASG 442 (768)
Q Consensus 428 v~~s~~~~~l~t~~~ 442 (768)
..++++|..++-.+.
T Consensus 312 ssis~~Gdi~~~~gp 326 (395)
T PF08596_consen 312 SSISRNGDIFYWTGP 326 (395)
T ss_dssp -EE-TTS-EEEE-SS
T ss_pred cEECCCCCEEEEeCc
Confidence 666777776655543
No 342
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.07 E-value=0.013 Score=61.18 Aligned_cols=261 Identities=16% Similarity=0.098 Sum_probs=162.9
Q ss_pred EEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEE
Q 004214 264 VQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFL 343 (768)
Q Consensus 264 i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 343 (768)
+.+++..+......+..+..+ ..+. ..+.+..+.++-.....+...+............-...-..+++++.+....
T Consensus 13 ~~v~~~~~~~~~~~~~~~~~~-~~v~--~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vy 89 (381)
T COG3391 13 VSVINTGTNKVTAAISLGRGP-GGVA--VNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVY 89 (381)
T ss_pred eEEEeecccEEEEEeecCCCC-ceeE--EcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEE
Confidence 444554444444343333322 2222 4455544344443333555555552222221121113345778888888777
Q ss_pred EEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeC---CCcEEEEeCCCCceEEEEec
Q 004214 344 VSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ---DRTACVWRLPDLVSVVTFRG 420 (768)
Q Consensus 344 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~ 420 (768)
++...++.|.+.|..... .... ..-......++++|+++.+.++.. ++++.+.|..+.+.+.....
T Consensus 90 v~~~~~~~v~vid~~~~~----------~~~~-~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~v 158 (381)
T COG3391 90 VTTGDSNTVSVIDTATNT----------VLGS-IPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPV 158 (381)
T ss_pred EecCCCCeEEEEcCcccc----------eeeE-eeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEec
Confidence 777778999999955321 1111 111225678999999988777766 68899999999988887554
Q ss_pred cCCCeEEEEEccCCCEEEEee-CCCcEEEEeCCCCceeE-E---eecCCCcEEEEEEEeCCCEEEEEeCC---CcEEEEE
Q 004214 421 HKRGIWSVEFSPVDQVVITAS-GDKTIKIWSISDGSCLK-T---FEGHTSSVLRASFLTRGAQIVSCGAD---GLVKLWT 492 (768)
Q Consensus 421 ~~~~v~~v~~s~~~~~l~t~~-~d~~i~iwd~~~~~~~~-~---~~~~~~~v~~~~~s~~~~~l~s~~~d---g~i~iwd 492 (768)
-..+ ..++++|+|+.++.+. .++.|.+.|.......+ . ...-......+.++|+|+++.+.... +.+...|
T Consensus 159 G~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id 237 (381)
T COG3391 159 GNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKID 237 (381)
T ss_pred CCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEe
Confidence 4345 8999999999666554 78999999976655543 1 01122334568899999977665543 5899999
Q ss_pred CCCCeEEEEeccCCC-cEEEEEEcCCCCEEEEEeC-CCcEEEEEcCCHH
Q 004214 493 VRTGECIATYDKHED-KIWALAVGKKTEMFATGGS-DALVNLWHDSTAA 539 (768)
Q Consensus 493 ~~~~~~~~~~~~~~~-~v~~l~~s~~~~~l~s~~~-dg~v~vw~~~~~~ 539 (768)
..++.....-..-.. ....+.++|+|..+.+... .+.+.+-+..+..
T Consensus 238 ~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~ 286 (381)
T COG3391 238 TATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDR 286 (381)
T ss_pred CCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCc
Confidence 998887776221222 4556889999999888744 4777877766543
No 343
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.06 E-value=0.0038 Score=59.60 Aligned_cols=199 Identities=12% Similarity=0.193 Sum_probs=116.5
Q ss_pred eecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCC
Q 004214 323 GTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDR 402 (768)
Q Consensus 323 ~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg 402 (768)
+.+-...+..++|+|+.+.++++....+.|.-++..+. . ..........+.-.+++..++.++++.-.++
T Consensus 17 l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~---------v-lr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~ 86 (248)
T PF06977_consen 17 LPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGK---------V-LRRIPLDGFGDYEGITYLGNGRYVLSEERDQ 86 (248)
T ss_dssp -TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT-----------E-EEEEE-SS-SSEEEEEE-STTEEEEEETTTT
T ss_pred CCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCCCC---------E-EEEEeCCCCCCceeEEEECCCEEEEEEcCCC
Confidence 34555669999999998878888888898888876521 1 1111122246788999988887777766789
Q ss_pred cEEEEeCCCCc------eEEEEe-----ccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCC---CceeEEe--------
Q 004214 403 TACVWRLPDLV------SVVTFR-----GHKRGIWSVEFSPVDQVVITASGDKTIKIWSISD---GSCLKTF-------- 460 (768)
Q Consensus 403 ~i~i~d~~~~~------~~~~~~-----~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~---~~~~~~~-------- 460 (768)
.+.++++.... ....+. .++..+..++|+|.++.|+.+-+..-..||.+.. ...+...
T Consensus 87 ~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~ 166 (248)
T PF06977_consen 87 RLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDD 166 (248)
T ss_dssp EEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-H
T ss_pred cEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccc
Confidence 99999884321 111121 2456789999999988888887777777777653 2222111
Q ss_pred ecCCCcEEEEEEEeCC-CEEEEEeCCCcEEEEECCCCeEEEEeccCC---------CcEEEEEEcCCCCEEEEEeCCCcE
Q 004214 461 EGHTSSVLRASFLTRG-AQIVSCGADGLVKLWTVRTGECIATYDKHE---------DKIWALAVGKKTEMFATGGSDALV 530 (768)
Q Consensus 461 ~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---------~~v~~l~~s~~~~~l~s~~~dg~v 530 (768)
......+..+.+.|.. ++++.+..+..|..+| .+|+.+..+.-.. ...-.|+|.++|+..++. +-+..
T Consensus 167 ~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpNlf 244 (248)
T PF06977_consen 167 KLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-EPNLF 244 (248)
T ss_dssp T--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE-TTTEE
T ss_pred cceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc-CCceE
Confidence 1233457888998864 5667777788999999 7888777664222 235689999999655554 55554
Q ss_pred EEE
Q 004214 531 NLW 533 (768)
Q Consensus 531 ~vw 533 (768)
+++
T Consensus 245 y~f 247 (248)
T PF06977_consen 245 YRF 247 (248)
T ss_dssp EEE
T ss_pred EEe
Confidence 444
No 344
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.05 E-value=0.005 Score=62.86 Aligned_cols=219 Identities=14% Similarity=0.154 Sum_probs=126.4
Q ss_pred CeEEEEeCCCceEEEeeecc-cCcEEEEEE---ecC---CCcEEEEEeC----------CCeEEEEeCCCCCCCCccccc
Q 004214 307 NSVRLWDSESRCCVGVGTGH-MGAVGAVAF---SKK---LQNFLVSGSS----------DHTIKVWSFDGLSDDAEQPMN 369 (768)
Q Consensus 307 g~i~iwd~~~~~~~~~~~~~-~~~v~~~~~---~~~---~~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~ 369 (768)
+.|++.|..+.+.+..+.-. ...+.+++. ..+ ...+++.|+. .|.|.++++.... .....
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~---~~~~~ 78 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESP---ENNFK 78 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS--------E
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEccc---ccceE
Confidence 35788888777766655432 223444333 322 1457777754 2889999988530 00011
Q ss_pred cceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCc-eEEEEe-ccCCCeEEEEEccCCCEEEEeeCCCcEE
Q 004214 370 LKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLV-SVVTFR-GHKRGIWSVEFSPVDQVVITASGDKTIK 447 (768)
Q Consensus 370 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~-~~~~~v~~v~~s~~~~~l~t~~~d~~i~ 447 (768)
.+.. ......++|++++-- ++. |+++. ++.|.+|++...+ ....-. .....++++... ++++++|.....+.
T Consensus 79 l~~i-~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~ 152 (321)
T PF03178_consen 79 LKLI-HSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVS 152 (321)
T ss_dssp EEEE-EEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEE
T ss_pred EEEE-EEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEE
Confidence 1122 223456788888866 444 44433 4789999998777 333222 122345555544 77999999888888
Q ss_pred EEeCCC-CceeEEee--cCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCC-------Ce----EEEEeccCCCcEEEE-
Q 004214 448 IWSISD-GSCLKTFE--GHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRT-------GE----CIATYDKHEDKIWAL- 512 (768)
Q Consensus 448 iwd~~~-~~~~~~~~--~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~-------~~----~~~~~~~~~~~v~~l- 512 (768)
++..+. +..+..+. .....++++.|.++++.++.++.+|.+.++.... +. .+..+. ....|+++
T Consensus 153 ~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~-lg~~v~~~~ 231 (321)
T PF03178_consen 153 LLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFH-LGDIVNSFR 231 (321)
T ss_dssp EEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE--SS-EEEEE
T ss_pred EEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEE-CCCccceEE
Confidence 885543 33233332 2456789999997778999999999999998752 22 233343 45667777
Q ss_pred --EEcCC--C------CEEEEEeCCCcEEEEEc
Q 004214 513 --AVGKK--T------EMFATGGSDALVNLWHD 535 (768)
Q Consensus 513 --~~s~~--~------~~l~s~~~dg~v~vw~~ 535 (768)
.+.|. + ..++-++.+|.|.+.-.
T Consensus 232 ~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l~p 264 (321)
T PF03178_consen 232 RGSLIPRSGSSESPNRPQILYGTVDGSIGVLIP 264 (321)
T ss_dssp E--SS--SSSS-TTEEEEEEEEETTS-EEEEEE
T ss_pred EEEeeecCCCCcccccceEEEEecCCEEEEEEe
Confidence 54552 2 24888889999885544
No 345
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.04 E-value=0.0052 Score=58.70 Aligned_cols=209 Identities=9% Similarity=0.134 Sum_probs=117.9
Q ss_pred eeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecc-cCcEEEEEEecCCCcEEEEEeCCCeEEEE
Q 004214 277 VLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGH-MGAVGAVAFSKKLQNFLVSGSSDHTIKVW 355 (768)
Q Consensus 277 ~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~~~dg~i~iw 355 (768)
.+.+-...+..++ +.++++.++++....+.|..++.. |+.++.+.-. .+..-.+++..++. ++++.-.++.+.++
T Consensus 16 ~l~g~~~e~SGLT--y~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~-~vl~~Er~~~L~~~ 91 (248)
T PF06977_consen 16 PLPGILDELSGLT--YNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGR-YVLSEERDQRLYIF 91 (248)
T ss_dssp E-TT--S-EEEEE--EETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTE-EEEEETTTTEEEEE
T ss_pred ECCCccCCccccE--EcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCE-EEEEEcCCCcEEEE
Confidence 4555566688998 888888888889999999999975 6777766533 35678888877643 55555568999999
Q ss_pred eCCCCCCCCcccc-ccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC---CceEEEE--e------ccCC
Q 004214 356 SFDGLSDDAEQPM-NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPD---LVSVVTF--R------GHKR 423 (768)
Q Consensus 356 d~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~---~~~~~~~--~------~~~~ 423 (768)
++........... ..........++..+-.++|+|.++.|+++-...-..+|.+.. ...+... . ....
T Consensus 92 ~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (248)
T PF06977_consen 92 TIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVR 171 (248)
T ss_dssp EE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS
T ss_pred EEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceec
Confidence 8854322111100 0001111123556789999999887777777776677776643 2121111 1 1334
Q ss_pred CeEEEEEccC-CCEEEEeeCCCcEEEEeCCCCceeEEeecCC---------CcEEEEEEEeCCCEEEEEeCCCcEEEE
Q 004214 424 GIWSVEFSPV-DQVVITASGDKTIKIWSISDGSCLKTFEGHT---------SSVLRASFLTRGAQIVSCGADGLVKLW 491 (768)
Q Consensus 424 ~v~~v~~s~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~---------~~v~~~~~s~~~~~l~s~~~dg~i~iw 491 (768)
.+.++.++|. +++++.+..+..|..+| .+|+.+..+.-.. ...-.++|.++|+..++ ++-+..++|
T Consensus 172 d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 172 DLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYRF 247 (248)
T ss_dssp ---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred cccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEEe
Confidence 5788999996 56777788889999999 6788776655222 24678999999855444 455555554
No 346
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.03 E-value=1.6e-06 Score=88.61 Aligned_cols=197 Identities=19% Similarity=0.245 Sum_probs=129.8
Q ss_pred cEEEEEEecCC-CcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEcc-CCCEEEEEe----CCC
Q 004214 329 AVGAVAFSKKL-QNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGS----QDR 402 (768)
Q Consensus 329 ~v~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~----~dg 402 (768)
.+.|+++.-+. +.++++|..+|.|.+-.++..... ......++..+.++++|++ |.+.||+|- .|.
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS--------s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds 129 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS--------SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDS 129 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccc--------cceecccccccccccccccccHHHHHhhhhhhcccC
Confidence 34555554333 357888999999999888754221 2344566778899999999 566777764 355
Q ss_pred cEEEEeCCCC--ceE--EEEec-cCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCc-eeEEeecCCCcEEEEEEEe-C
Q 004214 403 TACVWRLPDL--VSV--VTFRG-HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGS-CLKTFEGHTSSVLRASFLT-R 475 (768)
Q Consensus 403 ~i~i~d~~~~--~~~--~~~~~-~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~-~ 475 (768)
.+.|||+.++ .+. ..+.+ ......+++|-.+.+++.+|...+.++++|++... ....+ .+..+..+...| .
T Consensus 130 ~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~ 207 (783)
T KOG1008|consen 130 SLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFS 207 (783)
T ss_pred CccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCC
Confidence 7999999876 221 12222 34456689999999999999999999999997321 11111 334555677778 6
Q ss_pred CCEEEEEeCCCcEEEEE-CCCCe-EEEEeccC----CCcEEEEEEcCCCC-EEEEEeC-CCcEEEEEcC
Q 004214 476 GAQIVSCGADGLVKLWT-VRTGE-CIATYDKH----EDKIWALAVGKKTE-MFATGGS-DALVNLWHDS 536 (768)
Q Consensus 476 ~~~l~s~~~dg~i~iwd-~~~~~-~~~~~~~~----~~~v~~l~~s~~~~-~l~s~~~-dg~v~vw~~~ 536 (768)
++|+++.. ||.|.+|| ..+-+ ++..+... ...+..++|+|... .+++.+. .++|+++++.
T Consensus 208 ~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 208 PNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred CCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 77887766 99999999 43332 22222211 22489999999643 4555554 4568888764
No 347
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.02 E-value=0.00017 Score=76.44 Aligned_cols=265 Identities=11% Similarity=0.104 Sum_probs=147.0
Q ss_pred CCCCEEEEEeC----CCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeec
Q 004214 250 EEEQYLAVATN----IEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTG 325 (768)
Q Consensus 250 ~~~~~l~~~~~----~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 325 (768)
|..+++++++- .|.|.||- .+|++.+-. +.++.....||.| ...+|+.|-.-|.+.+|...+.+.-.....
T Consensus 25 PsePlfAVA~fS~er~GSVtIfa-dtGEPqr~V---t~P~hatSLCWHp-e~~vLa~gwe~g~~~v~~~~~~e~htv~~t 99 (1416)
T KOG3617|consen 25 PSEPLFAVASFSPERGGSVTIFA-DTGEPQRDV---TYPVHATSLCWHP-EEFVLAQGWEMGVSDVQKTNTTETHTVVET 99 (1416)
T ss_pred CCCceeEEEEecCCCCceEEEEe-cCCCCCccc---ccceehhhhccCh-HHHHHhhccccceeEEEecCCceeeeeccC
Confidence 56677777653 57787774 333322211 1222222233554 445589999999999999999888888889
Q ss_pred ccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCC--eEEEEEccCCC------EEEE
Q 004214 326 HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKD--INSLAVAPNDS------LVCT 397 (768)
Q Consensus 326 ~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~~~~s~~~~------~l~~ 397 (768)
|+.+|..+.|+++|. .++++..-|.|.+|...........+.-. ..-... ..|...++++. ..++
T Consensus 100 h~a~i~~l~wS~~G~-~l~t~d~~g~v~lwr~d~~g~~q~~~~~~------hel~~~ltl~cfRL~~~~Ee~~~laKaaV 172 (1416)
T KOG3617|consen 100 HPAPIQGLDWSHDGT-VLMTLDNPGSVHLWRYDVIGEIQTSNIMQ------HELNDQLTLWCFRLSYDREEKFKLAKAAV 172 (1416)
T ss_pred CCCCceeEEecCCCC-eEEEcCCCceeEEEEeeeccccccchhhh------hHhhceeeEEEEecCCChHHhhhhhhhhc
Confidence 999999999999977 79999999999999887432211111000 001122 23445555532 2333
Q ss_pred EeCCCcEE-EEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCC
Q 004214 398 GSQDRTAC-VWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRG 476 (768)
Q Consensus 398 ~~~dg~i~-i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~ 476 (768)
.+.+..+- .++.+....-.... |. =.|+|..++.++.+|+|+-.|- .|++....+..+. ..+-|.+..
T Consensus 173 tgDe~alD~~fnwk~~~a~rs~~-ks-------gv~~g~~F~~~~~~GtVyyvdq-~g~~~~V~k~dS~--vQmLf~~~~ 241 (1416)
T KOG3617|consen 173 TGDESALDEPFNWKESLAERSDE-KS-------GVPKGTEFLFAGKSGTVYYVDQ-NGRQRTVHKLDSE--VQMLFMGYC 241 (1416)
T ss_pred cCchhhhcccccCccchhhcccc-cc-------CCCCCcEEEEEcCCceEEEEcC-CCcEEEEEEccch--HHHHHhccc
Confidence 34443332 33322111111111 11 1467888888899999988874 4554443331111 111122211
Q ss_pred CEEEEEeCCCcEEEEEC-C----------------------------CC----eEEEEeccCCCcEEEEEEcCCCCEEEE
Q 004214 477 AQIVSCGADGLVKLWTV-R----------------------------TG----ECIATYDKHEDKIWALAVGKKTEMFAT 523 (768)
Q Consensus 477 ~~l~s~~~dg~i~iwd~-~----------------------------~~----~~~~~~~~~~~~v~~l~~s~~~~~l~s 523 (768)
.-++..-.+-.+.++-+ . +| .....+ .....+++++++..+..|.+
T Consensus 242 eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr~~eKyg~-e~ge~~~c~cY~~~~~~l~a 320 (1416)
T KOG3617|consen 242 EAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVLRKSEKYGL-ELGEGILCMCYGEKEIRLWA 320 (1416)
T ss_pred ceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCccccccccccccCCcchhh-hcCCceEEEEEeccceEEEe
Confidence 11111111111111110 0 01 000011 13456899999999999999
Q ss_pred EeCCCcEEEEEcCCH
Q 004214 524 GGSDALVNLWHDSTA 538 (768)
Q Consensus 524 ~~~dg~v~vw~~~~~ 538 (768)
|...|.+.+|.....
T Consensus 321 gt~~gnv~~w~~v~~ 335 (1416)
T KOG3617|consen 321 GTKEGNVTIWLDVNK 335 (1416)
T ss_pred cccCCcEEEeeecCc
Confidence 999999999986543
No 348
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.01 E-value=0.024 Score=61.62 Aligned_cols=62 Identities=13% Similarity=0.064 Sum_probs=44.0
Q ss_pred CCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecC
Q 004214 401 DRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGH 463 (768)
Q Consensus 401 dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~ 463 (768)
-|.+.-+|+.+++.............+. +.-.+.+++.++.||.++.+|.++|+.+..++-.
T Consensus 440 ~g~l~AiD~~tGk~~W~~~~~~p~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g 501 (527)
T TIGR03075 440 MGSLIAWDPITGKIVWEHKEDFPLWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTG 501 (527)
T ss_pred ceeEEEEeCCCCceeeEecCCCCCCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence 3678889999998887665322212222 1224567778888999999999999999888743
No 349
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.00 E-value=0.031 Score=58.69 Aligned_cols=214 Identities=12% Similarity=0.058 Sum_probs=109.5
Q ss_pred cEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCce------EEEeeecccCcEEEEEEe
Q 004214 263 QVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC------CVGVGTGHMGAVGAVAFS 336 (768)
Q Consensus 263 ~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~------~~~~~~~~~~~v~~~~~~ 336 (768)
.|.+|+...... ..+.-..+.+.++. |.. +.. |+.-..||.+++||+.... .+....-....+....+.
T Consensus 62 ~I~iys~sG~ll-~~i~w~~~~iv~~~--wt~-~e~-LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~ 136 (410)
T PF04841_consen 62 SIQIYSSSGKLL-SSIPWDSGRIVGMG--WTD-DEE-LVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFY 136 (410)
T ss_pred EEEEECCCCCEe-EEEEECCCCEEEEE--ECC-CCe-EEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccC
Confidence 377777655443 33333337787875 444 555 6677799999999987443 011111111112222233
Q ss_pred cCCCcEEEEEeCCCeEEEEeCCCCCCCCc-cccccceeeEe--eccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCc
Q 004214 337 KKLQNFLVSGSSDHTIKVWSFDGLSDDAE-QPMNLKAKAVV--AAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLV 413 (768)
Q Consensus 337 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~--~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~ 413 (768)
..| ++.-..++.+.+. ........ ......+.... ..+........++.+....+....++.+.+.+-...+
T Consensus 137 ~~G---ivvLt~~~~~~~v--~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~ 211 (410)
T PF04841_consen 137 KNG---IVVLTGNNRFYVV--NNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFK 211 (410)
T ss_pred CCC---EEEECCCCeEEEE--eCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEccccc
Confidence 232 3333344444333 22211100 00000000000 0011111112344455555555556666644433221
Q ss_pred eEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecC-CCcEEEEEEEeCCCEEEEEeCCCcEEEEE
Q 004214 414 SVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGH-TSSVLRASFLTRGAQIVSCGADGLVKLWT 492 (768)
Q Consensus 414 ~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~s~~~dg~i~iwd 492 (768)
. +. ..+++..+++||+++++|.-..+|.+.+.+..-.+.+..+... ......+.|..+...++.- ...|.+..
T Consensus 212 ~---i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l~~--~~~l~lvg 285 (410)
T PF04841_consen 212 Q---ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVLSW--EDELLLVG 285 (410)
T ss_pred c---cc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEEEe--CCEEEEEC
Confidence 1 21 2468999999999999999999999999987766777666643 3456678887664333332 33455554
No 350
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.95 E-value=0.001 Score=69.31 Aligned_cols=181 Identities=16% Similarity=0.102 Sum_probs=108.3
Q ss_pred eecCCCEEEEEEe--CC-CeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCcccc
Q 004214 292 ALSSGKILIVTGS--KD-NSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPM 368 (768)
Q Consensus 292 ~~~~~~~~l~~~~--~d-g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 368 (768)
+.+++..+....- .. ..+.++++.++....... ..+.-..-.|+|+|+.++++...||...+|-++.....
T Consensus 200 ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~----- 273 (425)
T COG0823 200 WSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN----- 273 (425)
T ss_pred cCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCc-----
Confidence 5555555333322 22 458999998876554443 23334456899999999999999988776655432111
Q ss_pred ccceeeEeeccCCCeEEEEEccCCCEEEEEeCC-C--cEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCC-C
Q 004214 369 NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQD-R--TACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGD-K 444 (768)
Q Consensus 369 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d-~ 444 (768)
...+......-+.=.|+|||+.++..+.. | .|.+++.+.... ..+......-..-.|+|||++++..+.. |
T Consensus 274 ----~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~i~~~~~~~g 348 (425)
T COG0823 274 ----LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDKIVFESSSGG 348 (425)
T ss_pred ----ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCCEEEEEeccCC
Confidence 11111112222256789999998877643 3 477777766654 3333333333377899999998877643 4
Q ss_pred c--EEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeC
Q 004214 445 T--IKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGA 484 (768)
Q Consensus 445 ~--i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 484 (768)
. |.+.|+.++...+.+. +......-.|.++|+.+...+.
T Consensus 349 ~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 349 QWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred ceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEEecc
Confidence 4 6777776665444443 3334445667788877655443
No 351
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.94 E-value=0.00017 Score=75.30 Aligned_cols=153 Identities=10% Similarity=0.141 Sum_probs=98.7
Q ss_pred eecCCCEEEEEEeCCCeEEEEeCCCceEEEeee-cccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCcccccc
Q 004214 292 ALSSGKILIVTGSKDNSVRLWDSESRCCVGVGT-GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNL 370 (768)
Q Consensus 292 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 370 (768)
....++. ++.|+.-|.+++|+-..+.....-. +-.+.+..++++++ ..+++.|+..|.|.++-+........ .
T Consensus 41 ~dst~~~-l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~-e~lvAagt~~g~V~v~ql~~~~p~~~----~ 114 (726)
T KOG3621|consen 41 VDATEEY-LAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSV-EYLVAAGTASGRVSVFQLNKELPRDL----D 114 (726)
T ss_pred eecCCce-EEEecccceEEEEecCchhhhcccccCccceEEEEEecch-hHhhhhhcCCceEEeehhhccCCCcc----e
Confidence 3355555 9999999999999987776544332 34455556667776 55889999999999998876322111 1
Q ss_pred ceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC----ceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcE
Q 004214 371 KAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDL----VSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTI 446 (768)
Q Consensus 371 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i 446 (768)
.....-..|...|++++|++++..+++|...|.|..-.+.+. .....+......|-.+.+.. +.+|++... .-
T Consensus 115 ~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q-~~LLVStl~--r~ 191 (726)
T KOG3621|consen 115 YVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ-SYLLVSTLT--RC 191 (726)
T ss_pred eeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeeccc-ceehHhhhh--hh
Confidence 111112337889999999999999999999999999888762 11222233455666666653 333333332 23
Q ss_pred EEEeCCC
Q 004214 447 KIWSISD 453 (768)
Q Consensus 447 ~iwd~~~ 453 (768)
.+++.+.
T Consensus 192 ~Lc~tE~ 198 (726)
T KOG3621|consen 192 ILCQTEA 198 (726)
T ss_pred heeecch
Confidence 3455543
No 352
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.94 E-value=0.00086 Score=70.16 Aligned_cols=146 Identities=16% Similarity=0.110 Sum_probs=86.8
Q ss_pred ccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCcee
Q 004214 378 AHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCL 457 (768)
Q Consensus 378 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~ 457 (768)
.....+..+.++|+|+++++ +.||.-.+|.....+... .+.-..++|.+.++ +|+-...++|.|+.--+....
T Consensus 30 ~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~-----~G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~~~ 102 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKA-----FGSGLSFVWSSRNR-YAVLESSSTIKIYKNFKNEVV 102 (443)
T ss_dssp E-SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEE-----EEE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE-TT
T ss_pred CCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCcccc-----cCceeEEEEecCcc-EEEEECCCeEEEEEcCccccc
Confidence 34556789999999999999 557888888854444332 23345688998554 666666889999743233333
Q ss_pred EEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 004214 458 KTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDST 537 (768)
Q Consensus 458 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~ 537 (768)
..+... ..+..+-. |..|+..+.+ .|.+||+.+++.+.++... +|..+.|+++|++++..+.+ .+.+++.+.
T Consensus 103 k~i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~~~ 174 (443)
T PF04053_consen 103 KSIKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKYNL 174 (443)
T ss_dssp -----S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-H
T ss_pred eEEcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEecc
Confidence 344322 23433332 8877777654 7999999999999999733 48999999999999998866 578887665
Q ss_pred H
Q 004214 538 A 538 (768)
Q Consensus 538 ~ 538 (768)
.
T Consensus 175 ~ 175 (443)
T PF04053_consen 175 E 175 (443)
T ss_dssp H
T ss_pred h
Confidence 4
No 353
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.92 E-value=0.013 Score=63.55 Aligned_cols=285 Identities=11% Similarity=0.097 Sum_probs=160.0
Q ss_pred CCEEEEEeCCCcEEEEECCCceeeeeeeCCc-cceEEEeee-e-----ecCCCEEEEEEeCCCeEEEEeCCCceEEEeee
Q 004214 252 EQYLAVATNIEQVQVYDLSSMSCSYVLAGHS-EIVLCLDTC-A-----LSSGKILIVTGSKDNSVRLWDSESRCCVGVGT 324 (768)
Q Consensus 252 ~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~-~~v~~l~~~-~-----~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 324 (768)
+..+++++.++.|+-+|..+++.+..+.... ..+.....| . .-.++. ++.++.|+.+.-.|..+|+.+....
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~-v~v~t~dg~l~ALDa~TGk~~W~~~ 147 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGK-VFFGTLDARLVALDAKTGKVVWSKK 147 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCE-EEEEcCCCEEEEEECCCCCEEeecc
Confidence 3477777778899999999998887654321 111110000 0 011234 6778889999999999999887654
Q ss_pred cc--c--CcEEE-EEEecCCCcEEEEEeC------CCeEEEEeCCCCCCCCccccccc---------------e------
Q 004214 325 GH--M--GAVGA-VAFSKKLQNFLVSGSS------DHTIKVWSFDGLSDDAEQPMNLK---------------A------ 372 (768)
Q Consensus 325 ~~--~--~~v~~-~~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~---------------~------ 372 (768)
.. . ..+++ -.+. + . .++.+.. +|.|..+|..++...-....... .
T Consensus 148 ~~~~~~~~~~tssP~v~-~-g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~ 224 (527)
T TIGR03075 148 NGDYKAGYTITAAPLVV-K-G-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWP 224 (527)
T ss_pred cccccccccccCCcEEE-C-C-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCC
Confidence 21 1 11111 1111 2 2 3444432 67888888776532211000000 0
Q ss_pred -eeEeeccCCCeEEEEEccCCCEEEEEeCC-----C-----------cEEEEeCCCCceEEEEeccCCCeE---------
Q 004214 373 -KAVVAAHGKDINSLAVAPNDSLVCTGSQD-----R-----------TACVWRLPDLVSVVTFRGHKRGIW--------- 426 (768)
Q Consensus 373 -~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g-----------~i~i~d~~~~~~~~~~~~~~~~v~--------- 426 (768)
.....+....=..++++|...++..+..+ + .|.-.|+++++..-.++.....++
T Consensus 225 ~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~ 304 (527)
T TIGR03075 225 GDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMI 304 (527)
T ss_pred CCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcE
Confidence 00000111112245777777777776632 2 577778899998888775333222
Q ss_pred EEEEccCCC---EEEEeeCCCcEEEEeCCCCceeEE--------ee---c-CC-CcE-----------------------
Q 004214 427 SVEFSPVDQ---VVITASGDKTIKIWSISDGSCLKT--------FE---G-HT-SSV----------------------- 467 (768)
Q Consensus 427 ~v~~s~~~~---~l~t~~~d~~i~iwd~~~~~~~~~--------~~---~-~~-~~v----------------------- 467 (768)
-+.+..+|+ .++.+..+|.+.+.|-.+|+++.. +. . .. .++
T Consensus 305 l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~ 384 (527)
T TIGR03075 305 LFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGRPIEVPEARSADGKKGKPVGVCPGFL 384 (527)
T ss_pred EEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCCCCCccChhhCcCCCCCCCeeEECCCCc
Confidence 223334665 788999999999999999988622 10 0 00 000
Q ss_pred -----EEEEEEeCCCEEEEEeC---------------------------------CCcEEEEECCCCeEEEEeccCCCcE
Q 004214 468 -----LRASFLTRGAQIVSCGA---------------------------------DGLVKLWTVRTGECIATYDKHEDKI 509 (768)
Q Consensus 468 -----~~~~~s~~~~~l~s~~~---------------------------------dg~i~iwd~~~~~~~~~~~~~~~~v 509 (768)
..++++|+..+++.... -|.|.-+|+.+|+............
T Consensus 385 Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~g~l~AiD~~tGk~~W~~~~~~p~~ 464 (527)
T TIGR03075 385 GGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDHMGSLIAWDPITGKIVWEHKEDFPLW 464 (527)
T ss_pred CCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCCceeEEEEeCCCCceeeEecCCCCCC
Confidence 01344444444433222 2457788888888877665322111
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEEcCCHHHH
Q 004214 510 WALAVGKKTEMFATGGSDALVNLWHDSTAAER 541 (768)
Q Consensus 510 ~~l~~s~~~~~l~s~~~dg~v~vw~~~~~~~~ 541 (768)
.+. +.-.+..++.++.||.++.+|..|++..
T Consensus 465 ~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~l 495 (527)
T TIGR03075 465 GGV-LATAGDLVFYGTLEGYFKAFDAKTGEEL 495 (527)
T ss_pred Ccc-eEECCcEEEEECCCCeEEEEECCCCCEe
Confidence 121 1224557777888999999999998654
No 354
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.91 E-value=0.019 Score=59.94 Aligned_cols=213 Identities=16% Similarity=0.153 Sum_probs=144.0
Q ss_pred eecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEe--CCCeEEEEeCCCCCCCCccccc
Q 004214 292 ALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGS--SDHTIKVWSFDGLSDDAEQPMN 369 (768)
Q Consensus 292 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~ 369 (768)
..+.+....+....++.|.+.|..+.........-. ....++++|+++.+.++-. .++++.+.|-....
T Consensus 81 v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~-------- 151 (381)
T COG3391 81 VNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNK-------- 151 (381)
T ss_pred eCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCe--------
Confidence 666777667777778999999987776666544322 5578899999876666666 36888888766432
Q ss_pred cceeeEeeccCCCeEEEEEccCCCEEEEEe-CCCcEEEEeCCCCceEE-E---EeccCCCeEEEEEccCCCEEEEeeCC-
Q 004214 370 LKAKAVVAAHGKDINSLAVAPNDSLVCTGS-QDRTACVWRLPDLVSVV-T---FRGHKRGIWSVEFSPVDQVVITASGD- 443 (768)
Q Consensus 370 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~-~---~~~~~~~v~~v~~s~~~~~l~t~~~d- 443 (768)
.......-..+ ..++++|+|..+.+.. .++.|.++|........ . ...-......+.++|+|..+.+....
T Consensus 152 --~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~ 228 (381)
T COG3391 152 --VTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGS 228 (381)
T ss_pred --EEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccC
Confidence 22222211223 8899999999666655 78899999977665543 1 11122344678999999977666544
Q ss_pred --CcEEEEeCCCCceeEEeecCCC-cEEEEEEEeCCCEEEEEeC-CCcEEEEECCCCeEEEEeccCCC---cEEEEEEcC
Q 004214 444 --KTIKIWSISDGSCLKTFEGHTS-SVLRASFLTRGAQIVSCGA-DGLVKLWTVRTGECIATYDKHED---KIWALAVGK 516 (768)
Q Consensus 444 --~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~---~v~~l~~s~ 516 (768)
+.+...|..++.....-..-.. ....+.++|+|+++.+... .+.+.+.|..+......+..... .+..+++.+
T Consensus 229 ~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~ 308 (381)
T COG3391 229 GSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISP 308 (381)
T ss_pred CCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceecccee
Confidence 5899999988877765221112 4566899999999988755 47899999998887777654332 344555544
No 355
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.91 E-value=0.043 Score=57.21 Aligned_cols=152 Identities=9% Similarity=0.075 Sum_probs=99.9
Q ss_pred ccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeE-
Q 004214 420 GHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGEC- 498 (768)
Q Consensus 420 ~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~- 498 (768)
.....|.+++++|+...++.|+.||+|.+||...+... +....-.++.++|+|+|..+++|+..|.+.+||+.-+..
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi~ 334 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPIK 334 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCccc
Confidence 36778999999999999999999999999998766433 223456678899999999999999999999999853211
Q ss_pred ------------EE---EeccCCCcEEEEEEcCCCC-------------EEEEEeCCCcEEEEEcCCHHHHHHHHHHHHH
Q 004214 499 ------------IA---TYDKHEDKIWALAVGKKTE-------------MFATGGSDALVNLWHDSTAAEREEAFRKEEE 550 (768)
Q Consensus 499 ------------~~---~~~~~~~~v~~l~~s~~~~-------------~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~ 550 (768)
+. .+..+...+..+.|.+... .|+..-+.|-+.+-.+..+....-...
T Consensus 335 ~qLlsEd~~P~~~L~Ls~yf~~~~~L~~iqW~~~~~~~~~~~~~~~~~~~L~l~f~~GPl~vl~~~~G~~~~G~l~---- 410 (545)
T PF11768_consen 335 MQLLSEDATPKSTLQLSKYFRVSSSLVHIQWAPAPQLSSQGEFYADTYDLLLLVFERGPLAVLRFKLGVFTRGDLG---- 410 (545)
T ss_pred eeeccccCCCccEEeeehhccCcchhheeEeccCCCccccCCCcCCccceEEEEEcCCCeEEEEEeeccccCCccc----
Confidence 11 1123455667788874322 444444555555555443322111000
Q ss_pred HHHhhhHHHHhhcccchHHHHHHHhhcCCc
Q 004214 551 AVLRGQELENAVLDADYTKAIQVAFELRRP 580 (768)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 580 (768)
...-...+++..+..+|+.+...++-.
T Consensus 411 ---~~eL~~~yl~~~qi~eAi~lL~smnW~ 437 (545)
T PF11768_consen 411 ---LVELISQYLRCDQIEEAINLLLSMNWN 437 (545)
T ss_pred ---HHHHHHHHHhcCCHHHHHHHHHhCCcc
Confidence 001122466666777888877776643
No 356
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.87 E-value=0.025 Score=56.42 Aligned_cols=231 Identities=16% Similarity=0.174 Sum_probs=131.1
Q ss_pred CCCEEEEEeCCCcEEEEECC-CceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEe-------
Q 004214 251 EEQYLAVATNIEQVQVYDLS-SMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGV------- 322 (768)
Q Consensus 251 ~~~~l~~~~~~~~i~i~d~~-~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~------- 322 (768)
.++.+++|+++| +.+++.. ......... ...|..+. ..+.-+.+++.+ |+.++++++..-.....
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~--vl~~~~~llvLs--d~~l~~~~L~~l~~~~~~~~~~~~ 78 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLS--VLPELNLLLVLS--DGQLYVYDLDSLEPVSTSAPLAFP 78 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEE--EecccCEEEEEc--CCccEEEEchhhcccccccccccc
Confidence 567899999988 9999983 233332222 22277776 666666544443 59999999875433321
Q ss_pred -------eecccCcEEEEE--EecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCC
Q 004214 323 -------GTGHMGAVGAVA--FSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDS 393 (768)
Q Consensus 323 -------~~~~~~~v~~~~--~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 393 (768)
.-.....+...+ -.+.+...+++ .....|.+|.......... ..... ..-...+.+++|. ++
T Consensus 79 ~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~v-a~kk~i~i~~~~~~~~~f~-----~~~ke-~~lp~~~~~i~~~--~~ 149 (275)
T PF00780_consen 79 KSRSLPTKLPETKGVSFFAVNGGHEGSRRLCV-AVKKKILIYEWNDPRNSFS-----KLLKE-ISLPDPPSSIAFL--GN 149 (275)
T ss_pred ccccccccccccCCeeEEeeccccccceEEEE-EECCEEEEEEEECCccccc-----ceeEE-EEcCCCcEEEEEe--CC
Confidence 111223344444 12333334444 4445899988765311000 11111 2234778889998 56
Q ss_pred EEEEEeCCCcEEEEeCCCCceEEEEecc------------CCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeE--E
Q 004214 394 LVCTGSQDRTACVWRLPDLVSVVTFRGH------------KRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLK--T 459 (768)
Q Consensus 394 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~------------~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~--~ 459 (768)
.++.|..+ ...+.|+.++.....+... ..++..+... ++.+|++- |..-.+.|. .|++.+ .
T Consensus 150 ~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~~-~G~~~r~~~ 224 (275)
T PF00780_consen 150 KICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVNK-NGEPSRKST 224 (275)
T ss_pred EEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEcC-CCCcCcccE
Confidence 77777754 4888899876554433211 1234444443 35666643 333333443 555443 2
Q ss_pred eecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCC
Q 004214 460 FEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHE 506 (768)
Q Consensus 460 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 506 (768)
+. -...+..+++. ..||+..+.++ |-||++.++++++++..+.
T Consensus 225 i~-W~~~p~~~~~~--~pyli~~~~~~-iEV~~~~~~~lvQ~i~~~~ 267 (275)
T PF00780_consen 225 IQ-WSSAPQSVAYS--SPYLIAFSSNS-IEVRSLETGELVQTIPLPN 267 (275)
T ss_pred EE-cCCchhEEEEE--CCEEEEECCCE-EEEEECcCCcEEEEEECCC
Confidence 22 22344555553 45888777654 9999999999999987443
No 357
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.87 E-value=4.6e-06 Score=85.40 Aligned_cols=204 Identities=16% Similarity=0.280 Sum_probs=133.4
Q ss_pred ccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCce--EEEeeecccCcEEEEEEecCCCcEEEEEe----CCCeEEEE
Q 004214 282 SEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC--CVGVGTGHMGAVGAVAFSKKLQNFLVSGS----SDHTIKVW 355 (768)
Q Consensus 282 ~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~s~~----~dg~i~iw 355 (768)
...+.|+++.+..+ +.+++.|..+|.|.+-..+... -.....++..+.++++|++-..+.|++|- .|..+.+|
T Consensus 56 tqy~kcva~~y~~d-~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iw 134 (783)
T KOG1008|consen 56 TQYVKCVASFYGND-RCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIW 134 (783)
T ss_pred CCCceeehhhcCCc-hhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccce
Confidence 34556666333332 4568899999999998776432 12345578889999999997677777773 36789999
Q ss_pred eCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC-ceEEEEeccCCCeEEEEEcc-C
Q 004214 356 SFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDL-VSVVTFRGHKRGIWSVEFSP-V 433 (768)
Q Consensus 356 d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~v~~s~-~ 433 (768)
|+...-..+....... .+......+++|..+.+++.+|.....++++|++.. .....+ .+..+..+..+| .
T Consensus 135 di~s~ltvPke~~~fs-----~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~ 207 (783)
T KOG1008|consen 135 DINSLLTVPKESPLFS-----SSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFS 207 (783)
T ss_pred ecccccCCCccccccc-----cccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCC
Confidence 9987633221111111 123445668889889999999999999999998732 222222 234566777888 6
Q ss_pred CCEEEEeeCCCcEEEEe-CCCC-ceeEEeecCC----CcEEEEEEEeCCC-EEEEEeC-CCcEEEEECC
Q 004214 434 DQVVITASGDKTIKIWS-ISDG-SCLKTFEGHT----SSVLRASFLTRGA-QIVSCGA-DGLVKLWTVR 494 (768)
Q Consensus 434 ~~~l~t~~~d~~i~iwd-~~~~-~~~~~~~~~~----~~v~~~~~s~~~~-~l~s~~~-dg~i~iwd~~ 494 (768)
++++++.. ||.|.+|| ..+- .++..+.... ..+..++|+|... .+++... .++|+.+|+.
T Consensus 208 ~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 208 PNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred CCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 77777665 89999999 3332 2333333222 2488999999644 4444444 5689999875
No 358
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.85 E-value=0.0011 Score=69.24 Aligned_cols=191 Identities=12% Similarity=0.013 Sum_probs=111.6
Q ss_pred EEeeecccCcEEEEEEecCCCcEEEEEeCC---CeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEE
Q 004214 320 VGVGTGHMGAVGAVAFSKKLQNFLVSGSSD---HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVC 396 (768)
Q Consensus 320 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 396 (768)
...+......+..-+|+|++..+....-.. ..+.++++..+.... ... ....-..-+|+|||+.|+
T Consensus 185 ~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~--------i~~---~~g~~~~P~fspDG~~l~ 253 (425)
T COG0823 185 QQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPV--------ILN---FNGNNGAPAFSPDGSKLA 253 (425)
T ss_pred eeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccce--------eec---cCCccCCccCCCCCCEEE
Confidence 333444455566678888887644443222 358888888653211 111 223334568999998877
Q ss_pred EEe-CCC--cEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeC-CC--cEEEEeCCCCceeEEeecCCCcEEEE
Q 004214 397 TGS-QDR--TACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASG-DK--TIKIWSISDGSCLKTFEGHTSSVLRA 470 (768)
Q Consensus 397 ~~~-~dg--~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~-d~--~i~iwd~~~~~~~~~~~~~~~~v~~~ 470 (768)
... .|| .|+++|+....... +....+.-+.=.|+|||+.++-.+. .| .|.++|...+.. ..+......-..-
T Consensus 254 f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p 331 (425)
T COG0823 254 FSSSRDGSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNP 331 (425)
T ss_pred EEECCCCCccEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCc
Confidence 654 455 46777877766333 4433333346689999998876654 33 477777765554 3333222222267
Q ss_pred EEEeCCCEEEEEeC-CCc--EEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEE
Q 004214 471 SFLTRGAQIVSCGA-DGL--VKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATG 524 (768)
Q Consensus 471 ~~s~~~~~l~s~~~-dg~--i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~ 524 (768)
.|+|||++++..+. +|. |.+.|+.++..+..+. +......-.|.+++..+...
T Consensus 332 ~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~ 387 (425)
T COG0823 332 VWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMFS 387 (425)
T ss_pred cCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEEe
Confidence 89999999887764 344 6777776666444433 23333344566666655543
No 359
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.85 E-value=0.012 Score=60.19 Aligned_cols=177 Identities=18% Similarity=0.203 Sum_probs=109.3
Q ss_pred CcEEEEECCCceeeeeeeC-CccceEEEeeeeecCC----CEEEEEEeC----------CCeEEEEeCCCc-----eEEE
Q 004214 262 EQVQVYDLSSMSCSYVLAG-HSEIVLCLDTCALSSG----KILIVTGSK----------DNSVRLWDSESR-----CCVG 321 (768)
Q Consensus 262 ~~i~i~d~~~~~~~~~~~~-~~~~v~~l~~~~~~~~----~~~l~~~~~----------dg~i~iwd~~~~-----~~~~ 321 (768)
..|+++|..+.+.+..+.- ....+.++..+....+ ..+++.|+. .|.|.++++... +...
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 4688888888877665432 3455666665555542 566777753 289999999884 2221
Q ss_pred e-eecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeC
Q 004214 322 V-GTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ 400 (768)
Q Consensus 322 ~-~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 400 (768)
. -....++|++++-.. . .++++. .+.|.+|++.... ........ .....+.++... ++++++|+.
T Consensus 82 i~~~~~~g~V~ai~~~~--~-~lv~~~-g~~l~v~~l~~~~-------~l~~~~~~-~~~~~i~sl~~~--~~~I~vgD~ 147 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSFN--G-RLVVAV-GNKLYVYDLDNSK-------TLLKKAFY-DSPFYITSLSVF--KNYILVGDA 147 (321)
T ss_dssp EEEEEESS-EEEEEEET--T-EEEEEE-TTEEEEEEEETTS-------SEEEEEEE--BSSSEEEEEEE--TTEEEEEES
T ss_pred EEEEeecCcceEhhhhC--C-EEEEee-cCEEEEEEccCcc-------cchhhhee-cceEEEEEEecc--ccEEEEEEc
Confidence 1 124578899988773 3 344433 4789999987542 11122221 122345555544 669999998
Q ss_pred CCcEEEEeCCC-CceEEEEec--cCCCeEEEEEccCCCEEEEeeCCCcEEEEeCC
Q 004214 401 DRTACVWRLPD-LVSVVTFRG--HKRGIWSVEFSPVDQVVITASGDKTIKIWSIS 452 (768)
Q Consensus 401 dg~i~i~d~~~-~~~~~~~~~--~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~ 452 (768)
...+.++..+. ...+..+.. ....++++.|-++++.++++..+|.+.++...
T Consensus 148 ~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 148 MKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp SSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred ccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 88888885543 222322222 34568888898777799999999999999875
No 360
>PF04192 Utp21: Utp21 specific WD40 associated putative domain ; InterPro: IPR007319 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. Utp21 is a component of the SSU processome, which is required for pre-18S rRNA processing. It interacts with Utp18 [].; GO: 0006364 rRNA processing, 0032040 small-subunit processome
Probab=97.84 E-value=6.2e-05 Score=71.00 Aligned_cols=114 Identities=20% Similarity=0.316 Sum_probs=90.8
Q ss_pred chHHHHHHHhhcCCchhHHHHHHHHHhchhhHHHHHHHHhhcC------HHHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q 004214 566 DYTKAIQVAFELRRPHKLFELFASVCRKREAELQIEKALHALG------KEEIRQLLEYVREWNTKPKLCHVAQFVLFQL 639 (768)
Q Consensus 566 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~------~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~ 639 (768)
.+.+.+..+...++...++..+..+... .++-.|+.|. ..++..+++++..++...+.++++|.||..+
T Consensus 112 ~f~~lL~~~~~~~dy~~~~~~LkslsPS-----~iDlEIRsL~~~~~~~~~~l~~Fl~~l~~~L~~~~dfElvQa~l~vF 186 (237)
T PF04192_consen 112 EFTRLLRSASESEDYSEFLEYLKSLSPS-----AIDLEIRSLSPESGGSYEELVSFLRFLTYRLKSRRDFELVQAYLSVF 186 (237)
T ss_pred HHHHHHHhhcccccHHHHHHHHHhCChh-----HHHHHHHhccCccCCcHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4455555555555555555655555443 7888888888 7889999999999999999999999999999
Q ss_pred hccCCcchhhcccC---hHhHHHhhccchHhHHHHHHHhHhhhhhhheecccccC
Q 004214 640 FNIHPPTEIIEIKG---ISDVLEGLIPYTQRHFSRIDRLVRSTFLLDYTLTGMSV 691 (768)
Q Consensus 640 l~~~~~~~~~~~~~---~~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~ 691 (768)
|++|+. .+...+. +...|..|....++...+|+.|. +|+..-+++
T Consensus 187 Lk~Hgd-~i~~~~~~~~L~~~l~~l~~~q~~~w~~L~~l~------~~~~cvv~f 234 (237)
T PF04192_consen 187 LKVHGD-VIMESEEEEELREALEELREAQESEWKRLDDLF------QYCSCVVSF 234 (237)
T ss_pred HHHHHH-HHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHH------hhhhhhhhh
Confidence 999965 6777788 99999999999999999999999 555554444
No 361
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.80 E-value=0.097 Score=57.88 Aligned_cols=216 Identities=11% Similarity=0.137 Sum_probs=129.5
Q ss_pred eEEEEeCCCceEEEeeecc----cCcEEEEEEecCCCcEEEEEeC----------CCeEEEEeCCCCCCCCcccccccee
Q 004214 308 SVRLWDSESRCCVGVGTGH----MGAVGAVAFSKKLQNFLVSGSS----------DHTIKVWSFDGLSDDAEQPMNLKAK 373 (768)
Q Consensus 308 ~i~iwd~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~ 373 (768)
.++++|-++.+.+...+.. .-.+.++.|..+...++++|+. .|.|.+|.+.... +.+..
T Consensus 751 ~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~-------~L~~v 823 (1096)
T KOG1897|consen 751 FLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELN-------SLELV 823 (1096)
T ss_pred EEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCC-------ceeee
Confidence 4677777776655443321 1234455577775667777753 4666666665311 11111
Q ss_pred eEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeC--
Q 004214 374 AVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSI-- 451 (768)
Q Consensus 374 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~-- 451 (768)
... .-.+.+.++.. -+|+++|. -+..|++|+..+.+.++.-..+..++..+...-.|..+++|.-=+++.+--.
T Consensus 824 ~e~-~v~Gav~aL~~-fngkllA~--In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~ 899 (1096)
T KOG1897|consen 824 AET-VVKGAVYALVE-FNGKLLAG--INQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKG 899 (1096)
T ss_pred eee-eeccceeehhh-hCCeEEEe--cCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEec
Confidence 110 11122333322 16776664 4568999999998777777778899999999999999999988777766544
Q ss_pred CCCceeEEe-ecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCC-------------------CeEEEEeccCCCcEEE
Q 004214 452 SDGSCLKTF-EGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRT-------------------GECIATYDKHEDKIWA 511 (768)
Q Consensus 452 ~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~-------------------~~~~~~~~~~~~~v~~ 511 (768)
..|...-.- .-+..+++++.+-.+..++ .+..+|.+.+-..++ |+.+..+. |..-|..
T Consensus 900 ~eg~f~evArD~~p~Wmtaveil~~d~yl-gae~~gNlf~v~~d~~~~td~eR~~l~~~~~~hlGelvn~f~-hg~lv~~ 977 (1096)
T KOG1897|consen 900 DEGNFEEVARDYNPNWMTAVEILDDDTYL-GAENSGNLFTVRKDSDATTDEERQILEEVGKFHLGELVNKFR-HGSLVMQ 977 (1096)
T ss_pred cCCceEEeehhhCccceeeEEEecCceEE-eecccccEEEEEecCCCCchhhhhcccceeeEEeccceeeee-ecceEee
Confidence 333333222 2467788888887666555 445567776654432 23333443 4444444
Q ss_pred E--EEcCCCCEEEEEeCCCcEEEEEcC
Q 004214 512 L--AVGKKTEMFATGGSDALVNLWHDS 536 (768)
Q Consensus 512 l--~~s~~~~~l~s~~~dg~v~vw~~~ 536 (768)
+ ..+|-+..+.-|..+|.|-+--.-
T Consensus 978 ~~~s~~~~~~~vlfgTv~GsIG~i~sl 1004 (1096)
T KOG1897|consen 978 LGDSMIPLEPKVLFGTVNGSIGIIVSL 1004 (1096)
T ss_pred ccccccCCCCcEEEEEccceEEEEEec
Confidence 2 345666678889999998665433
No 362
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.76 E-value=0.022 Score=56.71 Aligned_cols=229 Identities=13% Similarity=0.157 Sum_probs=127.5
Q ss_pred eecCCCEEEEEEeCCCeEEEEeC-CCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCcccccc
Q 004214 292 ALSSGKILIVTGSKDNSVRLWDS-ESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNL 370 (768)
Q Consensus 292 ~~~~~~~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 370 (768)
....+.. |+.|+.+| +.+++. .......... ...|..+...|+-+ .+++-+ |+.+.++++.............
T Consensus 3 ~~~~~~~-L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~-~llvLs-d~~l~~~~L~~l~~~~~~~~~~ 76 (275)
T PF00780_consen 3 ADSWGDR-LLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELN-LLLVLS-DGQLYVYDLDSLEPVSTSAPLA 76 (275)
T ss_pred cccCCCE-EEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccC-EEEEEc-CCccEEEEchhhcccccccccc
Confidence 3344555 88889888 899998 3333333322 23399999999855 344433 4999999998654333111000
Q ss_pred ce----eeEeeccCCCeEEEE--EccC-CCEEEEEeCCCcEEEEeCCCC-----ceEEEEeccCCCeEEEEEccCCCEEE
Q 004214 371 KA----KAVVAAHGKDINSLA--VAPN-DSLVCTGSQDRTACVWRLPDL-----VSVVTFRGHKRGIWSVEFSPVDQVVI 438 (768)
Q Consensus 371 ~~----~~~~~~~~~~i~~~~--~s~~-~~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~~~~~v~~v~~s~~~~~l~ 438 (768)
.. ..........+...+ -.+. +..|+++ ....|.+|..... +....+. -...+.+++|. ++.++
T Consensus 77 ~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~ 152 (275)
T PF00780_consen 77 FPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKIC 152 (275)
T ss_pred ccccccccccccccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEE
Confidence 00 001112233444444 1223 3445544 4458888887553 3445554 34778899998 66777
Q ss_pred EeeCCCcEEEEeCCCCceeEEeecCC------------CcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEE--Eecc
Q 004214 439 TASGDKTIKIWSISDGSCLKTFEGHT------------SSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIA--TYDK 504 (768)
Q Consensus 439 t~~~d~~i~iwd~~~~~~~~~~~~~~------------~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~ 504 (768)
.|.. +...+.|+.++.....+.... .++. +.-.+++.+|++.. . +-+|=-..|++.+ .+.
T Consensus 153 v~~~-~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~Ll~~~--~-~g~fv~~~G~~~r~~~i~- 226 (275)
T PF00780_consen 153 VGTS-KGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLG-IFQLSDNEFLLCYD--N-IGVFVNKNGEPSRKSTIQ- 226 (275)
T ss_pred EEeC-CceEEEecCCCCceEEeCccCCcchhhhcccCCCceE-EEEeCCceEEEEec--c-eEEEEcCCCCcCcccEEE-
Confidence 7765 458888998776544432111 1232 22234456666532 2 3333223554433 222
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCHH
Q 004214 505 HEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAA 539 (768)
Q Consensus 505 ~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~~ 539 (768)
-...+.++++ ...+|++.+.++ |.||++.+++
T Consensus 227 W~~~p~~~~~--~~pyli~~~~~~-iEV~~~~~~~ 258 (275)
T PF00780_consen 227 WSSAPQSVAY--SSPYLIAFSSNS-IEVRSLETGE 258 (275)
T ss_pred cCCchhEEEE--ECCEEEEECCCE-EEEEECcCCc
Confidence 2234455555 345888877655 9999998874
No 363
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.75 E-value=0.022 Score=59.83 Aligned_cols=197 Identities=14% Similarity=0.081 Sum_probs=101.8
Q ss_pred eEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEE
Q 004214 308 SVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLA 387 (768)
Q Consensus 308 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 387 (768)
.|++|+.... .+..+.-..+.+.++.|+.+. .|++-..||.+++||+.+.. .... .............+....
T Consensus 62 ~I~iys~sG~-ll~~i~w~~~~iv~~~wt~~e--~LvvV~~dG~v~vy~~~G~~-~fsl---~~~i~~~~v~e~~i~~~~ 134 (410)
T PF04841_consen 62 SIQIYSSSGK-LLSSIPWDSGRIVGMGWTDDE--ELVVVQSDGTVRVYDLFGEF-QFSL---GEEIEEEKVLECRIFAIW 134 (410)
T ss_pred EEEEECCCCC-EeEEEEECCCCEEEEEECCCC--eEEEEEcCCEEEEEeCCCce-eech---hhhccccCcccccccccc
Confidence 4777765544 334333333889999998863 47788899999999986432 0000 000000111112222223
Q ss_pred EccCCCEEEEEeCCCcEEEEeCCCCc-eEEEE---ec-----cCC-CeEE-EEEccCCCEEEEeeCCCcEEEEeCCCCce
Q 004214 388 VAPNDSLVCTGSQDRTACVWRLPDLV-SVVTF---RG-----HKR-GIWS-VEFSPVDQVVITASGDKTIKIWSISDGSC 456 (768)
Q Consensus 388 ~s~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~---~~-----~~~-~v~~-v~~s~~~~~l~t~~~d~~i~iwd~~~~~~ 456 (768)
+..+| ++.-+.++.+.+.+--... ....+ .+ +.. ..+. ..++.+....+....++.+.+.+-...+.
T Consensus 135 ~~~~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~ 212 (410)
T PF04841_consen 135 FYKNG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ 212 (410)
T ss_pred cCCCC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc
Confidence 33355 3333344444444322211 11111 11 000 0111 22444444444444445555444322211
Q ss_pred eEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccC-CCcEEEEEEcCC
Q 004214 457 LKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKH-EDKIWALAVGKK 517 (768)
Q Consensus 457 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~l~~s~~ 517 (768)
+. ..+++..++.||+|+++|.-..+|.+.+.+.+-.+.+..+... ......|.|.-+
T Consensus 213 ---i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~ 270 (410)
T PF04841_consen 213 ---ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGN 270 (410)
T ss_pred ---cc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECC
Confidence 22 3468999999999999999999999999987666666655433 234445555543
No 364
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.74 E-value=0.12 Score=57.16 Aligned_cols=413 Identities=10% Similarity=0.056 Sum_probs=209.7
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeee--eecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEE
Q 004214 77 VTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLT--VPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFI 154 (768)
Q Consensus 77 V~~l~fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (768)
++....+.+...++.++.++.+...++..+..... ......+.++.++|-+.... ....++
T Consensus 490 ~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~-----------------~s~~~a 552 (1096)
T KOG1897|consen 490 ITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPN-----------------KSRLLA 552 (1096)
T ss_pred eEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCC-----------------cceEEE
Confidence 44444445555667777777777777766552222 22334466777776543110 111333
Q ss_pred EeeCCcEEE-EEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEe
Q 004214 155 TVGERGIVR-MWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSK 233 (768)
Q Consensus 155 ~~~~~g~i~-iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~ 233 (768)
.|.-+..+. +.-....++...... ....-.+.+....+-.+...|+++..||.+..|.+...... +...+
T Consensus 553 VG~Ws~~~~~l~~~pd~~~~~~~~l------~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~---lsd~K 623 (1096)
T KOG1897|consen 553 VGLWSDISMILTFLPDLILITHEQL------SGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQ---LSDRK 623 (1096)
T ss_pred EEeecceEEEEEECCCcceeeeecc------CCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccce---Ecccc
Confidence 333332222 222222222211100 11122355666667677888999999999998876654321 11111
Q ss_pred eecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEe
Q 004214 234 RLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWD 313 (768)
Q Consensus 234 ~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd 313 (768)
...--..++.--.|.......+.+++. .-..+|.....-+...+... .+..++-..++.....++++. .+.+++.-
T Consensus 624 k~~lGt~P~~Lr~f~sk~~t~vfa~sd-rP~viY~~n~kLv~spls~k--ev~~~c~f~s~a~~d~l~~~~-~~~l~i~t 699 (1096)
T KOG1897|consen 624 KVTLGTQPISLRTFSSKSRTAVFALSD-RPTVIYSSNGKLVYSPLSLK--EVNHMCPFNSDAYPDSLASAN-GGALTIGT 699 (1096)
T ss_pred ccccCCCCcEEEEEeeCCceEEEEeCC-CCEEEEecCCcEEEeccchH--HhhhhcccccccCCceEEEec-CCceEEEE
Confidence 111112234444444444444444443 44444443332222222111 111111001122222244443 34566554
Q ss_pred CCCce--EEEeeecccCcEEEEEEecCCCcEEEEEeCC--------------CeEEEEeCCCCCCCCccccccceeeEee
Q 004214 314 SESRC--CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSD--------------HTIKVWSFDGLSDDAEQPMNLKAKAVVA 377 (768)
Q Consensus 314 ~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d--------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~ 377 (768)
+..-+ .+++.. -......+++.+... .+.+.+.. ..++++|-.+ ...+.
T Consensus 700 id~iqkl~irtvp-l~~~prrI~~q~~sl-~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nT-------------f~vl~ 764 (1096)
T KOG1897|consen 700 IDEIQKLHIRTVP-LGESPRRICYQESSL-TFGVLSNRIESSAEYYGEEYEVSFLRVLDQNT-------------FEVLS 764 (1096)
T ss_pred ecchhhcceeeec-CCCChhheEecccce-EEEEEecccccchhhcCCcceEEEEEEecCCc-------------eeEEe
Confidence 44321 122222 223445666666322 23332221 1233343321 11122
Q ss_pred ccC-------CCeEEEEEccC-CCEEEEEeC----------CCcEEEEeCCCCceEEEEecc--CCCeEEEEEccCCCEE
Q 004214 378 AHG-------KDINSLAVAPN-DSLVCTGSQ----------DRTACVWRLPDLVSVVTFRGH--KRGIWSVEFSPVDQVV 437 (768)
Q Consensus 378 ~~~-------~~i~~~~~s~~-~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~--~~~v~~v~~s~~~~~l 437 (768)
.|. ..+.++.|..| +.++++|+. .|.|.+|.+..+..+.....+ .+.+.++..- +|+++
T Consensus 765 ~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f-ngkll 843 (1096)
T KOG1897|consen 765 SHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF-NGKLL 843 (1096)
T ss_pred eccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh-CCeEE
Confidence 221 23455557766 778888763 467888877664333333222 2344444322 36666
Q ss_pred EEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEE--ECCCCeEEEEe-ccCCCcEEEEEE
Q 004214 438 ITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLW--TVRTGECIATY-DKHEDKIWALAV 514 (768)
Q Consensus 438 ~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw--d~~~~~~~~~~-~~~~~~v~~l~~ 514 (768)
|.- ...|++|++.+.+.++.-..|..++..+...-.|..+++|..-+.+.+. +-..|.....- +-++...+++.+
T Consensus 844 A~I--n~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtavei 921 (1096)
T KOG1897|consen 844 AGI--NQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEI 921 (1096)
T ss_pred Eec--CcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEE
Confidence 544 3689999999988888888899999999999999999999988876654 44444343332 235667777777
Q ss_pred cCCCCEEEEEeCCCcEEEEEcCCH
Q 004214 515 GKKTEMFATGGSDALVNLWHDSTA 538 (768)
Q Consensus 515 s~~~~~l~s~~~dg~v~vw~~~~~ 538 (768)
-.+. .++.+-.+|.+.+-..++.
T Consensus 922 l~~d-~ylgae~~gNlf~v~~d~~ 944 (1096)
T KOG1897|consen 922 LDDD-TYLGAENSGNLFTVRKDSD 944 (1096)
T ss_pred ecCc-eEEeecccccEEEEEecCC
Confidence 6544 4555667888888776644
No 365
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.70 E-value=0.0094 Score=66.08 Aligned_cols=142 Identities=11% Similarity=0.072 Sum_probs=99.6
Q ss_pred EeCCCeEEEEeCCCceEEEeeecccCc-EEEEEEecC----CCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEee
Q 004214 303 GSKDNSVRLWDSESRCCVGVGTGHMGA-VGAVAFSKK----LQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVA 377 (768)
Q Consensus 303 ~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 377 (768)
......|+-.|++.|+.+..+..|... |..++-... ...-.+.|-.+..+..||.+-...... .......
T Consensus 500 ~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v-----~~~~k~Y 574 (794)
T PF08553_consen 500 PNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLV-----DSQSKQY 574 (794)
T ss_pred CCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCcee-----ecccccc
Confidence 345678999999999999999887654 555543211 112356777888999999885321000 0011112
Q ss_pred ccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeC
Q 004214 378 AHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSI 451 (768)
Q Consensus 378 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~ 451 (768)
......+|++-+.+| +||+|+.+|.|++||--..+....+.+-..+|..|+.+.||+++++.+. ..+.+++.
T Consensus 575 ~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~t 646 (794)
T PF08553_consen 575 SSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCK-TYLLLIDT 646 (794)
T ss_pred ccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeec-ceEEEEEE
Confidence 345667888887777 7899999999999995433444456677899999999999999988776 67777775
No 366
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.59 E-value=0.029 Score=55.75 Aligned_cols=222 Identities=13% Similarity=0.047 Sum_probs=131.1
Q ss_pred eecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccc
Q 004214 292 ALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLK 371 (768)
Q Consensus 292 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 371 (768)
+.+..+.++.+--..+.|.-|+..++..... . +.+.+.++.....+. .|+++.. .+.+++....... ..
T Consensus 32 w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~-~-~p~~~~~~~~~d~~g-~Lv~~~~--g~~~~~~~~~~~~------t~ 100 (307)
T COG3386 32 WDPDRGALLWVDILGGRIHRLDPETGKKRVF-P-SPGGFSSGALIDAGG-RLIACEH--GVRLLDPDTGGKI------TL 100 (307)
T ss_pred CcCCCCEEEEEeCCCCeEEEecCCcCceEEE-E-CCCCcccceeecCCC-eEEEEcc--ccEEEeccCCcee------EE
Confidence 5566666677777788899998876643322 2 223334444433333 3444432 2455555322110 00
Q ss_pred eeeEe-eccCCCeEEEEEccCCCEEEEEeC-----C----CcEEEEeCC-CCceEEEEeccCCCeEEEEEccCCCEEEEe
Q 004214 372 AKAVV-AAHGKDINSLAVAPNDSLVCTGSQ-----D----RTACVWRLP-DLVSVVTFRGHKRGIWSVEFSPVDQVVITA 440 (768)
Q Consensus 372 ~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~-----d----g~i~i~d~~-~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~ 440 (768)
..... .......+.+.+.|+|.+.+.... . ..-.+|.+. .+.....+..+-..-+.++||||++.|+.+
T Consensus 101 ~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~a 180 (307)
T COG3386 101 LAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVA 180 (307)
T ss_pred eccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEE
Confidence 00000 111245567888999887766544 1 112344444 556666666666667889999999888877
Q ss_pred eCC-CcEEEEeCCC--Cce-----eEEeecCCCcEEEEEEEeCCCEEEEEeCCC-cEEEEECCCCeEEEEeccCCCcEEE
Q 004214 441 SGD-KTIKIWSISD--GSC-----LKTFEGHTSSVLRASFLTRGAQIVSCGADG-LVKLWTVRTGECIATYDKHEDKIWA 511 (768)
Q Consensus 441 ~~d-~~i~iwd~~~--~~~-----~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~v~~ 511 (768)
... +.|.-|++.. +.. ...+....+..-.++...+|++.+++..+| .|.+|+.+ |+.+..+..+...+++
T Consensus 181 DT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~ 259 (307)
T COG3386 181 DTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTN 259 (307)
T ss_pred eCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCcc
Confidence 654 7788887752 211 112222345555677778888776555554 89999988 9999999877788888
Q ss_pred EEEc-CCCCEEEEEe
Q 004214 512 LAVG-KKTEMFATGG 525 (768)
Q Consensus 512 l~~s-~~~~~l~s~~ 525 (768)
++|- |+.+.|...+
T Consensus 260 ~~FgG~~~~~L~iTs 274 (307)
T COG3386 260 PAFGGPDLNTLYITS 274 (307)
T ss_pred ceEeCCCcCEEEEEe
Confidence 8885 4455554443
No 367
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=0.00035 Score=72.15 Aligned_cols=93 Identities=16% Similarity=0.236 Sum_probs=80.0
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeE-EEEEccCCCEEEEeeCCCcEEEEeCCCCceeE
Q 004214 380 GKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIW-SVEFSPVDQVVITASGDKTIKIWSISDGSCLK 458 (768)
Q Consensus 380 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~-~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~ 458 (768)
...+.-+.|+|.-.++|.+..+|.+.+..+. ...+.++..|..+++ +++|.|||++||+|-.||+|++.|+.++..+.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 3567889999999999999999999999988 888888887888888 99999999999999999999999999998777
Q ss_pred Eee-cCCCcEEEEEEE
Q 004214 459 TFE-GHTSSVLRASFL 473 (768)
Q Consensus 459 ~~~-~~~~~v~~~~~s 473 (768)
.+. .....|.++.|.
T Consensus 99 ~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 99 SFLFSVETDISKGIWD 114 (665)
T ss_pred ccccccccchheeecc
Confidence 632 245567777775
No 368
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.53 E-value=0.18 Score=53.68 Aligned_cols=239 Identities=11% Similarity=0.099 Sum_probs=130.3
Q ss_pred eecCCCEEEEEEeCCC----eEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCC----------CeEEEEeC
Q 004214 292 ALSSGKILIVTGSKDN----SVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSD----------HTIKVWSF 357 (768)
Q Consensus 292 ~~~~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d----------g~i~iwd~ 357 (768)
++++++.++++-+..| .++++|+.+++.+...-... ....+.|.+++..++.+...+ ..|..|.+
T Consensus 131 ~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~ 209 (414)
T PF02897_consen 131 VSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKL 209 (414)
T ss_dssp ETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEET
T ss_pred ECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-ccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEEC
Confidence 6677887666655555 59999999998765422111 122399999988666666443 23677777
Q ss_pred CCCCCCCccccccceeeEeeccCCC--eEEEEEccCCCEEEEEeCC----CcEEEEeCCCC----ceEEEEeccCCCeEE
Q 004214 358 DGLSDDAEQPMNLKAKAVVAAHGKD--INSLAVAPNDSLVCTGSQD----RTACVWRLPDL----VSVVTFRGHKRGIWS 427 (768)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~--i~~~~~s~~~~~l~~~~~d----g~i~i~d~~~~----~~~~~~~~~~~~v~~ 427 (768)
.... ......+...... ...+..++++++++..... ..+.+.++..+ .....+......+..
T Consensus 210 gt~~--------~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~ 281 (414)
T PF02897_consen 210 GTPQ--------SEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEY 281 (414)
T ss_dssp TS-G--------GG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EE
T ss_pred CCCh--------HhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEE
Confidence 5431 1112333332222 5678899999998765433 34788888764 233444444444444
Q ss_pred EEEccCCCEEEEee---CCCcEEEEeCCCCce---eEEeecCCCcEEEEEEEeCCCEEEEEe-CCC--cEEEEECCCCeE
Q 004214 428 VEFSPVDQVVITAS---GDKTIKIWSISDGSC---LKTFEGHTSSVLRASFLTRGAQIVSCG-ADG--LVKLWTVRTGEC 498 (768)
Q Consensus 428 v~~s~~~~~l~t~~---~d~~i~iwd~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg--~i~iwd~~~~~~ 498 (768)
..-+..+.+++... ..+.|.-.++.+... ...+..+...+.-..+...+.+|+... .++ .|+++++..+..
T Consensus 282 ~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~ 361 (414)
T PF02897_consen 282 YVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKE 361 (414)
T ss_dssp EEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEE
T ss_pred EEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcE
Confidence 33333444444332 346677778877653 235555666444444555566665544 444 689999984444
Q ss_pred EEEecc-CCCcEEEEEEcCCCCEEE-EEe---CCCcEEEEEcCCHH
Q 004214 499 IATYDK-HEDKIWALAVGKKTEMFA-TGG---SDALVNLWHDSTAA 539 (768)
Q Consensus 499 ~~~~~~-~~~~v~~l~~s~~~~~l~-s~~---~dg~v~vw~~~~~~ 539 (768)
...+.. -.+.|..+...+++..+. +.+ .-+.+..||+.+++
T Consensus 362 ~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~ 407 (414)
T PF02897_consen 362 SREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGE 407 (414)
T ss_dssp EEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTC
T ss_pred EeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCC
Confidence 444432 344566666556555433 222 23456777776653
No 369
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.52 E-value=0.059 Score=53.60 Aligned_cols=217 Identities=11% Similarity=0.040 Sum_probs=122.0
Q ss_pred ecCCCCEEEEEeCCCcEEEEECCCceee-eeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeec-
Q 004214 248 LGEEEQYLAVATNIEQVQVYDLSSMSCS-YVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTG- 325 (768)
Q Consensus 248 ~~~~~~~l~~~~~~~~i~i~d~~~~~~~-~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~- 325 (768)
.+..+.++.+--..+.|.-|+..++... ....... .++. ....++. |+++. ..+.+++..++..+..+..
T Consensus 33 ~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~---~~~~--~~d~~g~-Lv~~~--~g~~~~~~~~~~~~t~~~~~ 104 (307)
T COG3386 33 DPDRGALLWVDILGGRIHRLDPETGKKRVFPSPGGF---SSGA--LIDAGGR-LIACE--HGVRLLDPDTGGKITLLAEP 104 (307)
T ss_pred cCCCCEEEEEeCCCCeEEEecCCcCceEEEECCCCc---ccce--eecCCCe-EEEEc--cccEEEeccCCceeEEeccc
Confidence 3334445566666788888888766433 2222222 3332 3344544 44443 3356666665544222221
Q ss_pred ----ccCcEEEEEEecCCCcEEEEEeCCC----------eEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccC
Q 004214 326 ----HMGAVGAVAFSKKLQNFLVSGSSDH----------TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN 391 (768)
Q Consensus 326 ----~~~~v~~~~~~~~~~~~l~s~~~dg----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 391 (768)
.......+.+.|+|. +..+.... .-.+|.++. ..........+-..-+.++||||
T Consensus 105 ~~~~~~~r~ND~~v~pdG~--~wfgt~~~~~~~~~~~~~~G~lyr~~p---------~g~~~~l~~~~~~~~NGla~SpD 173 (307)
T COG3386 105 EDGLPLNRPNDGVVDPDGR--IWFGDMGYFDLGKSEERPTGSLYRVDP---------DGGVVRLLDDDLTIPNGLAFSPD 173 (307)
T ss_pred cCCCCcCCCCceeEcCCCC--EEEeCCCccccCccccCCcceEEEEcC---------CCCEEEeecCcEEecCceEECCC
Confidence 113345667778766 33332221 012333321 01122222333345678999999
Q ss_pred CCEEEEEeCC-CcEEEEeCCC--C----ce-EEEEeccCCCeEEEEEccCCCEEEEeeCCC-cEEEEeCCCCceeEEeec
Q 004214 392 DSLVCTGSQD-RTACVWRLPD--L----VS-VVTFRGHKRGIWSVEFSPVDQVVITASGDK-TIKIWSISDGSCLKTFEG 462 (768)
Q Consensus 392 ~~~l~~~~~d-g~i~i~d~~~--~----~~-~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~-~i~iwd~~~~~~~~~~~~ 462 (768)
++.+..+... +.|.-|++.. + +. ...+....+..-.++...+|.+.+++...| .|.+|+.. |+++..+.-
T Consensus 174 g~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~l 252 (307)
T COG3386 174 GKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKL 252 (307)
T ss_pred CCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEEC
Confidence 9877777654 7788887752 1 11 122222345556677888888886555554 89999987 999999998
Q ss_pred CCCcEEEEEEE-eCCCEEEEEeC
Q 004214 463 HTSSVLRASFL-TRGAQIVSCGA 484 (768)
Q Consensus 463 ~~~~v~~~~~s-~~~~~l~s~~~ 484 (768)
+...+++++|- ++.+.|+..+.
T Consensus 253 P~~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 253 PVKRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred CCCCCccceEeCCCcCEEEEEec
Confidence 87888999995 45555544443
No 370
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=0.0004 Score=71.74 Aligned_cols=93 Identities=17% Similarity=0.164 Sum_probs=78.1
Q ss_pred CCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEE-EEEEEeCCCEEEEEeCCCcEEEEECCCCeEEE
Q 004214 422 KRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVL-RASFLTRGAQIVSCGADGLVKLWTVRTGECIA 500 (768)
Q Consensus 422 ~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~ 500 (768)
...+.-+.|+|.-.++|++..+|.|-+..+. .+.+.++.-|...++ +++|.|||+.|+.|-.||+|++.|+.++..+.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 3467789999999999999999999999987 888888887777777 99999999999999999999999999998777
Q ss_pred Ee-ccCCCcEEEEEEc
Q 004214 501 TY-DKHEDKIWALAVG 515 (768)
Q Consensus 501 ~~-~~~~~~v~~l~~s 515 (768)
.. .....+|.++-|+
T Consensus 99 ~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 99 SFLFSVETDISKGIWD 114 (665)
T ss_pred ccccccccchheeecc
Confidence 62 1234556666554
No 371
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.45 E-value=0.00036 Score=44.72 Aligned_cols=39 Identities=46% Similarity=0.788 Sum_probs=34.5
Q ss_pred CEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEE
Q 004214 20 GFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWD 60 (768)
Q Consensus 20 ~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd 60 (768)
+.+...+.+|...|.++.|+|++.. +++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKY--LASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCE--EEEecCCCeEEEcC
Confidence 4567888899999999999998755 99999999999996
No 372
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.44 E-value=0.17 Score=51.11 Aligned_cols=269 Identities=12% Similarity=0.068 Sum_probs=121.9
Q ss_pred CCCEEEEEeC---CCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeeccc
Q 004214 251 EEQYLAVATN---IEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHM 327 (768)
Q Consensus 251 ~~~~l~~~~~---~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 327 (768)
+++.|+.++. ...+.+.|+.+++..+.-.+........ +..++++. ++-......++-.|+.+.+....+....
T Consensus 46 dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~--~~s~~~~~-~~Yv~~~~~l~~vdL~T~e~~~vy~~p~ 122 (386)
T PF14583_consen 46 DGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGG--FLSPDDRA-LYYVKNGRSLRRVDLDTLEERVVYEVPD 122 (386)
T ss_dssp TS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT---EE-TTSSE-EEEEETTTEEEEEETTT--EEEEEE--T
T ss_pred CCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccce--EEecCCCe-EEEEECCCeEEEEECCcCcEEEEEECCc
Confidence 4544444443 4567778999998876655432211111 14466665 4444455688999999988777777666
Q ss_pred CcEEEEEEecCCCcEEEEEeC-----------------------CCeEEEEeCCCCCCCCccccccceeeEeeccCCCeE
Q 004214 328 GAVGAVAFSKKLQNFLVSGSS-----------------------DHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDIN 384 (768)
Q Consensus 328 ~~v~~~~~~~~~~~~l~s~~~-----------------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 384 (768)
.-+....|..+.....+++.. ...|.--|+.++ ...........+.
T Consensus 123 ~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG-----------~~~~v~~~~~wlg 191 (386)
T PF14583_consen 123 DWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTG-----------ERKVVFEDTDWLG 191 (386)
T ss_dssp TEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT-------------EEEEEEESS-EE
T ss_pred ccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCC-----------ceeEEEecCcccc
Confidence 666555554221111233321 011122222211 2233333455678
Q ss_pred EEEEccCCC-EEEEEeC---CC-cEEEEeCCC-CceEEEEeccC--CCeEEEEEccCCCEEEEe-----eCCCcEEEEeC
Q 004214 385 SLAVAPNDS-LVCTGSQ---DR-TACVWRLPD-LVSVVTFRGHK--RGIWSVEFSPVDQVVITA-----SGDKTIKIWSI 451 (768)
Q Consensus 385 ~~~~s~~~~-~l~~~~~---dg-~i~i~d~~~-~~~~~~~~~~~--~~v~~v~~s~~~~~l~t~-----~~d~~i~iwd~ 451 (768)
.+.|+|... +|+.|-. +. .-+||-+++ +.....+..+. ..+..=-|.|||..|.-- +.+..|.-+|+
T Consensus 192 H~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~ 271 (386)
T PF14583_consen 192 HVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDP 271 (386)
T ss_dssp EEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-T
T ss_pred CcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCC
Confidence 899999544 4444332 22 235665532 33333333332 234445689999866542 23556778888
Q ss_pred CCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCC----------------cEEEEECCCCeEEEEe---------ccCC
Q 004214 452 SDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADG----------------LVKLWTVRTGECIATY---------DKHE 506 (768)
Q Consensus 452 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg----------------~i~iwd~~~~~~~~~~---------~~~~ 506 (768)
.+++....... .+.....-++||++++-=+.|. -|+++++..+...... .++.
T Consensus 272 ~t~~~~~~~~~--p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~ 349 (386)
T PF14583_consen 272 DTGERRRLMEM--PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDR 349 (386)
T ss_dssp TT--EEEEEEE---SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBS
T ss_pred CCCCceEEEeC--CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCC
Confidence 88765432221 2333445567888776544332 4667888776643211 1111
Q ss_pred C-cEEEEEEcCCCCEEE-EEeCCCcEEEEEc
Q 004214 507 D-KIWALAVGKKTEMFA-TGGSDALVNLWHD 535 (768)
Q Consensus 507 ~-~v~~l~~s~~~~~l~-s~~~dg~v~vw~~ 535 (768)
. .=....|+|||++++ ++...|...||-.
T Consensus 350 q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 350 QVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV 380 (386)
T ss_dssp STT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred ccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence 1 124578999999866 5556787777754
No 373
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.43 E-value=0.13 Score=53.16 Aligned_cols=85 Identities=16% Similarity=0.303 Sum_probs=59.7
Q ss_pred eccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEE-EE-EccCC----------------C-EE
Q 004214 377 AAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWS-VE-FSPVD----------------Q-VV 437 (768)
Q Consensus 377 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~-v~-~s~~~----------------~-~l 437 (768)
......+.+++.+|++++.|+...=|.|.++|+.++..++.++|....-.. +. ..+.. . ++
T Consensus 304 ~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~Lv 383 (415)
T PF14655_consen 304 PDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLV 383 (415)
T ss_pred ccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEE
Confidence 344556889999999999999888899999999999888877765432111 10 01100 1 23
Q ss_pred EEeeCCCcEEEEeCCCCceeEEee
Q 004214 438 ITASGDKTIKIWSISDGSCLKTFE 461 (768)
Q Consensus 438 ~t~~~d~~i~iwd~~~~~~~~~~~ 461 (768)
+-+-.-|.|.||+++.|..+..+.
T Consensus 384 IyaprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 384 IYAPRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred EEeccCCeEEEEecCCCCEEEEEE
Confidence 345567899999999888877765
No 374
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.42 E-value=0.016 Score=63.38 Aligned_cols=209 Identities=14% Similarity=0.118 Sum_probs=114.1
Q ss_pred CCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEe-----CCCeEEEEeCCCCCCCCccccccceeeEeeccC
Q 004214 306 DNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGS-----SDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHG 380 (768)
Q Consensus 306 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 380 (768)
+|.+.-.+-..-.++.-..+....+.+.+++|+|....++.. .|..-.+|-...+.. ...... .
T Consensus 328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~---------~~~lt~--g 396 (591)
T PRK13616 328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGV---------AVQVLE--G 396 (591)
T ss_pred CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCc---------ceeeec--C
Confidence 666655443332333222233346788999999886555542 244334443321110 111111 2
Q ss_pred CCeEEEEEccCCCEEEEEeCC------------CcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEE
Q 004214 381 KDINSLAVAPNDSLVCTGSQD------------RTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKI 448 (768)
Q Consensus 381 ~~i~~~~~s~~~~~l~~~~~d------------g~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~i 448 (768)
...+.-.|+|+|..+++.... +.+.+.++..+.... .....|..+.|||||..++... ++.|.+
T Consensus 397 ~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~V 472 (591)
T PRK13616 397 HSLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYL 472 (591)
T ss_pred CCCCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEE
Confidence 236788999998877776533 223333443332222 2356799999999999888766 477777
Q ss_pred ---EeCCCCce-e---EEee-cCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCC-CeEEEEecc--CCCcEEEEEEcCC
Q 004214 449 ---WSISDGSC-L---KTFE-GHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRT-GECIATYDK--HEDKIWALAVGKK 517 (768)
Q Consensus 449 ---wd~~~~~~-~---~~~~-~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~--~~~~v~~l~~s~~ 517 (768)
-....|.. + ..+. +-...+.++.|.+++.++ ++..++.-.+|.+.- |.....+.. ...++.+++-++.
T Consensus 473 a~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~ 551 (591)
T PRK13616 473 AVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS 551 (591)
T ss_pred EEEEeCCCCceeecccEEeecccCCccccceEecCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc
Confidence 44445541 1 1122 233346889999999854 555555445554431 322222222 3567777877763
Q ss_pred CCEEEEEeCCCcEEE
Q 004214 518 TEMFATGGSDALVNL 532 (768)
Q Consensus 518 ~~~l~s~~~dg~v~v 532 (768)
.++....+|.+.+
T Consensus 552 --~iyv~~~~g~~~l 564 (591)
T PRK13616 552 --TVYVTDARAVLQL 564 (591)
T ss_pred --eEEEEcCCceEEe
Confidence 4556666765443
No 375
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.36 E-value=0.00054 Score=43.84 Aligned_cols=39 Identities=41% Similarity=0.616 Sum_probs=34.9
Q ss_pred CeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 004214 64 KKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWD 102 (768)
Q Consensus 64 ~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd 102 (768)
++++..+..|...|.++.|.+++..+++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 456677788999999999999999999999999999996
No 376
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.34 E-value=0.01 Score=60.50 Aligned_cols=147 Identities=12% Similarity=0.133 Sum_probs=104.4
Q ss_pred cCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCc------EEEEEeCCCeEEEEeCCCCCCCCccc
Q 004214 294 SSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQN------FLVSGSSDHTIKVWSFDGLSDDAEQP 367 (768)
Q Consensus 294 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~------~l~s~~~dg~i~iwd~~~~~~~~~~~ 367 (768)
.+.+.++.++.....++-.|++.|+.+.....+.. |.-+.+.|+.+. --+.|-.|..|.-||.+-....
T Consensus 343 ~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~---- 417 (644)
T KOG2395|consen 343 ADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN---- 417 (644)
T ss_pred cccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc----
Confidence 34455567777778899999999999999988776 777777776531 2345667888999998732210
Q ss_pred cccceeeEeec----cCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCC
Q 004214 368 MNLKAKAVVAA----HGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGD 443 (768)
Q Consensus 368 ~~~~~~~~~~~----~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d 443 (768)
....... ......|.+-..+| ++++|+.+|.|++||--.......+++-..+|..|..+.+|++|++.+.
T Consensus 418 ----kl~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~- 491 (644)
T KOG2395|consen 418 ----KLAVVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCK- 491 (644)
T ss_pred ----eeeeeeccccccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecc-
Confidence 1111122 22345566655555 8999999999999997444444567788899999999999999887765
Q ss_pred CcEEEEeC
Q 004214 444 KTIKIWSI 451 (768)
Q Consensus 444 ~~i~iwd~ 451 (768)
..+.+-++
T Consensus 492 tyLlLi~t 499 (644)
T KOG2395|consen 492 TYLLLIDT 499 (644)
T ss_pred cEEEEEEE
Confidence 66666664
No 377
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.31 E-value=0.0024 Score=70.37 Aligned_cols=98 Identities=28% Similarity=0.471 Sum_probs=75.7
Q ss_pred EEEeecCCCcEEEEECCCCEEE-EEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEE
Q 004214 2 FALLEGADRKVLVWDVDGGFCT-HYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSM 80 (768)
Q Consensus 2 ~latg~~dg~i~vwd~~~~~~~-~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l 80 (768)
++|.|++.|.|...|+.+.-+. +.=..-.++|++++|+.+|+. ++.|-.+|.|.+||+.+++.++.+..|..+.+++
T Consensus 101 ~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~--l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~v 178 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSL--LLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGV 178 (1206)
T ss_pred eEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCce--eccccCCCcEEEEEccCCcceeeeeecCCccceE
Confidence 5888999999999998765322 111224679999999999988 9999999999999999999999888776655554
Q ss_pred EE---cCCCCEEEEEeCCCeEEEEEC
Q 004214 81 AI---TSDGSTLISAGRDKVVNLWDL 103 (768)
Q Consensus 81 ~f---s~d~~~L~s~~~dg~i~vWd~ 103 (768)
-+ ..++..++++..-|. +|.+
T Consensus 179 i~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 179 IFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred EEEEEeCCCcEEEEccCCCc--eEEE
Confidence 43 456667888877775 6654
No 378
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.29 E-value=0.016 Score=64.39 Aligned_cols=139 Identities=11% Similarity=0.078 Sum_probs=95.5
Q ss_pred CCEEEEE-eCCCcEEEEeCCCCceEEEEeccCCC-eEEEEEccC-------CCEEEEeeCCCcEEEEeCCCC-ceeEEee
Q 004214 392 DSLVCTG-SQDRTACVWRLPDLVSVVTFRGHKRG-IWSVEFSPV-------DQVVITASGDKTIKIWSISDG-SCLKTFE 461 (768)
Q Consensus 392 ~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~-v~~v~~s~~-------~~~l~t~~~d~~i~iwd~~~~-~~~~~~~ 461 (768)
.++|+.. .....|+-.|+..|+.+..+..|... |..+ .|+ ..-.+.|-.+..+..||.+-. ..+..-.
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~--~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~ 570 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDI--APDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQ 570 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEe--cccccccccCCCceEEEECCCceEEeccCCCCCceeecc
Confidence 3344433 34578999999999999999987654 5544 443 234456777789999998753 2221111
Q ss_pred ----cCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeE-EEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 004214 462 ----GHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGEC-IATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHD 535 (768)
Q Consensus 462 ----~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~ 535 (768)
......+|++-+.+| +||+|+.+|.||+||- .|.. -..+.+-..+|.+|..+.||+++++.+.. .|.+++.
T Consensus 571 ~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~t-yLlLi~t 646 (794)
T PF08553_consen 571 SKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATCKT-YLLLIDT 646 (794)
T ss_pred ccccccCCCceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEeecc-eEEEEEE
Confidence 133455666666666 8999999999999994 4433 33455678999999999999999887755 4556553
No 379
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.29 E-value=0.25 Score=49.88 Aligned_cols=280 Identities=15% Similarity=0.105 Sum_probs=130.4
Q ss_pred eEEEEccCCCceEEEEe-cCe--EEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECC
Q 004214 194 TAATVLPSNQGLLCVTA-DQQ--LLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLS 270 (768)
Q Consensus 194 ~~~~~~~~~~~l~~~~~-dg~--i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~ 270 (768)
..-+|.+++..|+..+. +|. ++..++.+.. ..++ . .+..........+ ++.+.++...+...++-.|+.
T Consensus 39 ~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~--i~QL---T--dg~g~~~~g~~~s-~~~~~~~Yv~~~~~l~~vdL~ 110 (386)
T PF14583_consen 39 YQNCFTDDGRKLLFASDFDGNRNLYLLDLATGE--ITQL---T--DGPGDNTFGGFLS-PDDRALYYVKNGRSLRRVDLD 110 (386)
T ss_dssp TS--B-TTS-EEEEEE-TTSS-EEEEEETTT-E--EEE--------SS-B-TTT-EE--TTSSEEEEEETTTEEEEEETT
T ss_pred cCCCcCCCCCEEEEEeccCCCcceEEEEcccCE--EEEC---c--cCCCCCccceEEe-cCCCeEEEEECCCeEEEEECC
Confidence 34456788888876664 554 4444444332 1111 1 1111112223334 445665555555789999999
Q ss_pred CceeeeeeeCCccceEEEeeeeecCCCEEEEEEe----------------------CCCeEEEEeCCCceEEEeeecccC
Q 004214 271 SMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGS----------------------KDNSVRLWDSESRCCVGVGTGHMG 328 (768)
Q Consensus 271 ~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~----------------------~dg~i~iwd~~~~~~~~~~~~~~~ 328 (768)
+.+....+......+....+...+++.. ++..- ....|.-.|+.+|+....+. ...
T Consensus 111 T~e~~~vy~~p~~~~g~gt~v~n~d~t~-~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~ 188 (386)
T PF14583_consen 111 TLEERVVYEVPDDWKGYGTWVANSDCTK-LVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTD 188 (386)
T ss_dssp T--EEEEEE--TTEEEEEEEEE-TTSSE-EEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS
T ss_pred cCcEEEEEECCcccccccceeeCCCccE-EEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCc
Confidence 9887666666666554444334444444 32211 11235556777777655544 455
Q ss_pred cEEEEEEecCCCcEEEEEeC---CCe-EEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeC----
Q 004214 329 AVGAVAFSKKLQNFLVSGSS---DHT-IKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ---- 400 (768)
Q Consensus 329 ~v~~~~~~~~~~~~l~s~~~---dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---- 400 (768)
.+..+.|+|..+.+++-|-+ +.. -++|-++...... +.... ......+..=-|.|||..|..-+.
T Consensus 189 wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~------~~v~~-~~~~e~~gHEfw~~DG~~i~y~~~~~~~ 261 (386)
T PF14583_consen 189 WLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNV------KKVHR-RMEGESVGHEFWVPDGSTIWYDSYTPGG 261 (386)
T ss_dssp -EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---------EESS----TTEEEEEEEE-TTSS-EEEEEEETTT
T ss_pred cccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcc------eeeec-CCCCcccccccccCCCCEEEEEeecCCC
Confidence 67788999987765555432 322 3667665332111 11111 111234555678999987765332
Q ss_pred -CCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCC----------------cEEEEeCCCCceeEEe---
Q 004214 401 -DRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDK----------------TIKIWSISDGSCLKTF--- 460 (768)
Q Consensus 401 -dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~----------------~i~iwd~~~~~~~~~~--- 460 (768)
+..|.-+|+.+++...... ......+-.++||++++-=+.|. -|+++++..+....-.
T Consensus 262 ~~~~i~~~d~~t~~~~~~~~--~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~ 339 (386)
T PF14583_consen 262 QDFWIAGYDPDTGERRRLME--MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHD 339 (386)
T ss_dssp --EEEEEE-TTT--EEEEEE--E-SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE--
T ss_pred CceEEEeeCCCCCCceEEEe--CCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeecc
Confidence 3467778888876543222 22455666788898876544432 4667888766543211
Q ss_pred ------ecCCC-cEEEEEEEeCCCEEE-EEeCCCcEEEEE
Q 004214 461 ------EGHTS-SVLRASFLTRGAQIV-SCGADGLVKLWT 492 (768)
Q Consensus 461 ------~~~~~-~v~~~~~s~~~~~l~-s~~~dg~i~iwd 492 (768)
.++.. .=....|+|||++++ ++...|...||-
T Consensus 340 ~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~ 379 (386)
T PF14583_consen 340 TSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYL 379 (386)
T ss_dssp -----BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEE
T ss_pred CcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEE
Confidence 11111 124578999999865 555577666664
No 380
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.22 E-value=0.09 Score=50.05 Aligned_cols=178 Identities=13% Similarity=0.160 Sum_probs=120.8
Q ss_pred cCccceeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeeeecce--eEeeEEecCCCCCccccccccchhhhhcccCC
Q 004214 71 DKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYE--MVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRS 148 (768)
Q Consensus 71 ~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (768)
.+-...+.++.|+|+.+.|++......-.||=..+|..+.++|... ..+.+.+..++.
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~-------------------- 141 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQ-------------------- 141 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCE--------------------
Confidence 3444559999999999999999999988999889999999988543 355666665553
Q ss_pred cceEEEEeeCCcEEEEEEcCCce-eeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccc-
Q 004214 149 LEIHFITVGERGIVRMWNADSAC-LYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKK- 226 (768)
Q Consensus 149 ~~~~~~~~~~~g~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~- 226 (768)
+.++--.++.+.++.++... ............. ......++-.+++.|.+..++.+-..+-+.+|.....+...
T Consensus 142 ---fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~-~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~ 217 (316)
T COG3204 142 ---FVIVDERDRALYLFTVDADTTVISAKVQKIPLGT-TNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLS 217 (316)
T ss_pred ---EEEEehhcceEEEEEEcCCccEEeccceEEeccc-cCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccc
Confidence 44555556777777766652 2222221111111 12226788999999999999999998888888877544211
Q ss_pred --eeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCc
Q 004214 227 --MELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSM 272 (768)
Q Consensus 227 --~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~ 272 (768)
..........-.-..+.++.|.+..+.+++.+..++.+.-.|....
T Consensus 218 ~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 218 VHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred cccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCC
Confidence 0111111111223467788888888899999999898888887655
No 381
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.15 E-value=0.016 Score=63.39 Aligned_cols=148 Identities=16% Similarity=0.132 Sum_probs=91.1
Q ss_pred CCeEEEEEccCCCEEEEEe------CCC--cEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCC---------
Q 004214 381 KDINSLAVAPNDSLVCTGS------QDR--TACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGD--------- 443 (768)
Q Consensus 381 ~~i~~~~~s~~~~~l~~~~------~dg--~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d--------- 443 (768)
..+.+.+++|+|+.++... .|. .|.+++.. +.......+ ...+.-.|+|+|..|++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecC--CCCCCceECCCCCceEEEecCcceEEEecc
Confidence 4678899999999887765 243 45555542 222222232 347888999998877776432
Q ss_pred ---CcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEE---EECCCCeE-E---EEe-ccCCCcEEEE
Q 004214 444 ---KTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKL---WTVRTGEC-I---ATY-DKHEDKIWAL 512 (768)
Q Consensus 444 ---~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~i---wd~~~~~~-~---~~~-~~~~~~v~~l 512 (768)
+.+.+.++..+.... .....|..+.|||||..++... +|.|++ -....|+. + ..+ ..-...+.++
T Consensus 427 ~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l 502 (591)
T PRK13616 427 PATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSL 502 (591)
T ss_pred CCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccc
Confidence 233333444443322 2356799999999999987766 477777 44445541 1 112 1233346889
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEcC
Q 004214 513 AVGKKTEMFATGGSDALVNLWHDS 536 (768)
Q Consensus 513 ~~s~~~~~l~s~~~dg~v~vw~~~ 536 (768)
.|.+++..+ ++..++.-.+|.+.
T Consensus 503 ~W~~~~~L~-V~~~~~~~~v~~v~ 525 (591)
T PRK13616 503 DWRTGDSLV-VGRSDPEHPVWYVN 525 (591)
T ss_pred eEecCCEEE-EEecCCCCceEEEe
Confidence 999999854 55555555667654
No 382
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=97.11 E-value=0.77 Score=52.05 Aligned_cols=111 Identities=15% Similarity=0.148 Sum_probs=69.6
Q ss_pred EEeecCCCcEEEEECCCCEEEEEEEcCCCc--------EEEEEEeeC--C------------CccEEEEEeCCCcEEEEE
Q 004214 3 ALLEGADRKVLVWDVDGGFCTHYFKGHKGV--------VSSILFHPD--T------------DKSLLFSGSDDATVRVWD 60 (768)
Q Consensus 3 latg~~dg~i~vwd~~~~~~~~~l~gh~~~--------V~~l~~spd--~------------~~~~l~sg~~dg~I~iWd 60 (768)
|..++.++.|.-.|..+|+.+-++...... ...+++... + ....++.++.|+.+.-.|
T Consensus 197 lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiALD 276 (764)
T TIGR03074 197 LYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIALD 276 (764)
T ss_pred EEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEEE
Confidence 445667899999999999988877643221 122333211 0 111378888999999999
Q ss_pred CCCCeeEEEecCccceeE-------------EEEEcC--CCCEEEEEeC----------CCeEEEEECCCCeeeeeeec
Q 004214 61 LLAKKCVATLDKHFSRVT-------------SMAITS--DGSTLISAGR----------DKVVNLWDLRDYSCKLTVPT 114 (768)
Q Consensus 61 ~~~~~~~~~l~~h~~~V~-------------~l~fs~--d~~~L~s~~~----------dg~i~vWd~~~~~~~~~~~~ 114 (768)
..+|+.+..+.. .+.|. .+.-+| .+..++.++. +|.|+-+|..+|+.+-.+..
T Consensus 277 A~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~ 354 (764)
T TIGR03074 277 ADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWDP 354 (764)
T ss_pred CCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEec
Confidence 999999877642 22121 111112 1335555532 57899999999988777653
No 383
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.10 E-value=0.05 Score=43.83 Aligned_cols=101 Identities=18% Similarity=0.189 Sum_probs=66.8
Q ss_pred EEEEEE---ecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEE
Q 004214 330 VGAVAF---SKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACV 406 (768)
Q Consensus 330 v~~~~~---~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i 406 (768)
|+++++ ..+|.+-|++|+.|..|++|+-.. ..........|++++-... ..++.+..+|+|-+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e-------------~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGv 67 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE-------------IVAEITETDKVTSLCSLGG-GRFAYALANGTVGV 67 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc-------------EEEEEecccceEEEEEcCC-CEEEEEecCCEEEE
Confidence 455555 446667899999999999997542 2222233456777777665 56899999999999
Q ss_pred EeCCCCceEEEEeccCCCeEEEEEcc-CC---CEEEEeeCCCcEE
Q 004214 407 WRLPDLVSVVTFRGHKRGIWSVEFSP-VD---QVVITASGDKTIK 447 (768)
Q Consensus 407 ~d~~~~~~~~~~~~~~~~v~~v~~s~-~~---~~l~t~~~d~~i~ 447 (768)
|+- ...+...+. ...++++++.. ++ .-|++|-.+|.|-
T Consensus 68 Y~~--~~RlWRiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 68 YDR--SQRLWRIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred EeC--cceeeeecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 975 334444443 33366665544 22 3688888888764
No 384
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=97.08 E-value=0.48 Score=49.19 Aligned_cols=280 Identities=16% Similarity=0.202 Sum_probs=141.7
Q ss_pred CCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEE---ec-CCCCEEEEEeCCCcEEEEECCCc--e-
Q 004214 201 SNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKF---LG-EEEQYLAVATNIEQVQVYDLSSM--S- 273 (768)
Q Consensus 201 ~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~-~~~~~l~~~~~~~~i~i~d~~~~--~- 273 (768)
..+.+++++..|.+++|...........+.....+ ..+|..+.. .+ .+...||+ -.-..+.+|.+... .
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l---~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~ 111 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQL---KDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTV 111 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEec---CCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCc
Confidence 34678889999999999986554333333333333 356666654 22 23345555 44478888887321 1
Q ss_pred ------eeeeeeCCccceEEEeeee--ec--CCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEE
Q 004214 274 ------CSYVLAGHSEIVLCLDTCA--LS--SGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFL 343 (768)
Q Consensus 274 ------~~~~~~~~~~~v~~l~~~~--~~--~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 343 (768)
.+..+..|.-.-.+..+|. +. .+..++..-+.||.+.+|+-+.......+.. .--...+++.+... .+
T Consensus 112 ~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tD-sf 189 (418)
T PF14727_consen 112 EHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTD-SF 189 (418)
T ss_pred ccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCC-EE
Confidence 1222333332222222222 22 2346789999999999999877654444443 22223456666634 68
Q ss_pred EEEeCCCeEEEEeCCCCCCCCc-------------cccccceeeEeeccCCCeEEEEE---ccCCCEEEEEeCCCcEEEE
Q 004214 344 VSGSSDHTIKVWSFDGLSDDAE-------------QPMNLKAKAVVAAHGKDINSLAV---APNDSLVCTGSQDRTACVW 407 (768)
Q Consensus 344 ~s~~~dg~i~iwd~~~~~~~~~-------------~~~~~~~~~~~~~~~~~i~~~~~---s~~~~~l~~~~~dg~i~i~ 407 (768)
++++.+..+..|.......... ......+...+ .-+..+..+.. +.....+++-+. .++...
T Consensus 190 vt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~-nlGE~~l~i~v~~~~~~~~~IvvLge-r~Lf~l 267 (418)
T PF14727_consen 190 VTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSF-NLGEQALDIQVVRFSSSESDIVVLGE-RSLFCL 267 (418)
T ss_pred EEecCceeEEEecHHHhhhccccccccccccccccccccccceeEE-ECCceeEEEEEEEcCCCCceEEEEec-ceEEEE
Confidence 8888888999987643321111 11111122222 22333333333 323333333333 455555
Q ss_pred eCCCCceEEEEeccCCCeEEEE-Ecc----CC---CEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEE---EeCC
Q 004214 408 RLPDLVSVVTFRGHKRGIWSVE-FSP----VD---QVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASF---LTRG 476 (768)
Q Consensus 408 d~~~~~~~~~~~~~~~~v~~v~-~s~----~~---~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~---s~~~ 476 (768)
+. +|......+ ......|++ |.. .+ ..++.++.++++.||. +.+++..-.....+| ++.. ..-.
T Consensus 268 ~~-~G~l~~~kr-Ld~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~--d~~L~WsA~l~~~PV-al~v~~~~~~~ 342 (418)
T PF14727_consen 268 KD-NGSLRFQKR-LDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYE--DTTLVWSAQLPHVPV-ALSVANFNGLK 342 (418)
T ss_pred cC-CCeEEEEEe-cCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEe--CCeEEEecCCCCCCE-EEEecccCCCC
Confidence 54 343333322 222222222 211 22 2578888889999986 334443333222332 2322 2223
Q ss_pred CEEEEEeCCCcEEEEEC
Q 004214 477 AQIVSCGADGLVKLWTV 493 (768)
Q Consensus 477 ~~l~s~~~dg~i~iwd~ 493 (768)
..|++-+.+|.+.+-=+
T Consensus 343 G~IV~Ls~~G~L~v~YL 359 (418)
T PF14727_consen 343 GLIVSLSDEGQLSVSYL 359 (418)
T ss_pred ceEEEEcCCCcEEEEEe
Confidence 35666666676665443
No 385
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.07 E-value=0.00082 Score=60.80 Aligned_cols=140 Identities=11% Similarity=0.114 Sum_probs=82.8
Q ss_pred EEEEeCCCcEEEEeCCCCceEEEE-eccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCC-CceeEEeecCCCcEEE-EE
Q 004214 395 VCTGSQDRTACVWRLPDLVSVVTF-RGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISD-GSCLKTFEGHTSSVLR-AS 471 (768)
Q Consensus 395 l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~-~~~~~~~~~~~~~v~~-~~ 471 (768)
+..-+.||.|.-++++..+....- .-+... ...-.-+..+++|+.+|.|.+|+..- |.....+..-...|.+ +.
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip 109 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIP 109 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhcc---eeecccCceEEeecccceEEEecCCccchHHHhhhcccccceeccc
Confidence 344466777777766543221110 111111 11122356789999999999998762 2222222222222322 22
Q ss_pred EEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCC-CcEEEEEEcCCCCEEEEE--eCCCcEEEEEcCC
Q 004214 472 FLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHE-DKIWALAVGKKTEMFATG--GSDALVNLWHDST 537 (768)
Q Consensus 472 ~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~l~~s~~~~~l~s~--~~dg~v~vw~~~~ 537 (768)
-..++.+..+++.||.|+.|++..++.+.....|. .++..+..+..+++++.+ |.|..++.|++..
T Consensus 110 ~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 110 NGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred cccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 23355688999999999999999999888877777 555555555566666666 6666666666554
No 386
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.06 E-value=0.041 Score=44.32 Aligned_cols=102 Identities=17% Similarity=0.197 Sum_probs=64.2
Q ss_pred eeEEEEec---CCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCce
Q 004214 242 ILDLKFLG---EEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC 318 (768)
Q Consensus 242 i~~~~~~~---~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 318 (768)
|.++++.. +..+.|++|+.|..|++|+-.. .+..+. ..+.|.++. .... .. ++.+..+|+|-+|+-...
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e--~~~Ei~-e~~~v~~L~--~~~~-~~-F~Y~l~NGTVGvY~~~~R- 73 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE--IVAEIT-ETDKVTSLC--SLGG-GR-FAYALANGTVGVYDRSQR- 73 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc--EEEEEe-cccceEEEE--EcCC-CE-EEEEecCCEEEEEeCcce-
Confidence 44555543 4558999999999999998653 333333 245566664 3333 44 999999999999976432
Q ss_pred EEEeeecccCcEEEEEE---ecCCCcEEEEEeCCCeEE
Q 004214 319 CVGVGTGHMGAVGAVAF---SKKLQNFLVSGSSDHTIK 353 (768)
Q Consensus 319 ~~~~~~~~~~~v~~~~~---~~~~~~~l~s~~~dg~i~ 353 (768)
+...+... .+.++++ ..+|..-|++|-.+|.|-
T Consensus 74 -lWRiKSK~-~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 74 -LWRIKSKN-QVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred -eeeeccCC-CeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 22223222 2444444 334455689998888774
No 387
>PHA02713 hypothetical protein; Provisional
Probab=97.04 E-value=0.052 Score=59.69 Aligned_cols=144 Identities=10% Similarity=0.093 Sum_probs=76.6
Q ss_pred cCCCEEEEEeCCC-----cEEEEeCCCCce--EEEEeccCCCeEEEEEccCCCEEEEeeCCC------------------
Q 004214 390 PNDSLVCTGSQDR-----TACVWRLPDLVS--VVTFRGHKRGIWSVEFSPVDQVVITASGDK------------------ 444 (768)
Q Consensus 390 ~~~~~l~~~~~dg-----~i~i~d~~~~~~--~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~------------------ 444 (768)
-+|++.+.|+.++ .+..||..+.+- +..+.........+. -+|.+.+.|+.++
T Consensus 350 ~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~ 427 (557)
T PHA02713 350 IDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEED 427 (557)
T ss_pred ECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEE--ECCEEEEEeCCCccccccccccccccccccc
Confidence 3678888888764 478899876532 111111111122222 2577777777542
Q ss_pred -----cEEEEeCCCCc--eeEEeecCCCcEEEEEEEeCCCEEEEEeCCC------cEEEEECCC-Ce--EEEEeccCCCc
Q 004214 445 -----TIKIWSISDGS--CLKTFEGHTSSVLRASFLTRGAQIVSCGADG------LVKLWTVRT-GE--CIATYDKHEDK 508 (768)
Q Consensus 445 -----~i~iwd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg------~i~iwd~~~-~~--~~~~~~~~~~~ 508 (768)
.+..||..+.+ .+..+.. .........-+|+..+.||.++ .+..||..+ .+ .+..+..+...
T Consensus 428 ~~~~~~ve~YDP~td~W~~v~~m~~--~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~ 505 (557)
T PHA02713 428 THSSNKVIRYDTVNNIWETLPNFWT--GTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSA 505 (557)
T ss_pred ccccceEEEECCCCCeEeecCCCCc--ccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccccc
Confidence 46778876543 2222211 1111112234566666676542 467899887 43 33333322222
Q ss_pred EEEEEEcCCCCEEEEEeCCC--cEEEEEcCCHH
Q 004214 509 IWALAVGKKTEMFATGGSDA--LVNLWHDSTAA 539 (768)
Q Consensus 509 v~~l~~s~~~~~l~s~~~dg--~v~vw~~~~~~ 539 (768)
.....+ +|...++||.|| .+..||..+.+
T Consensus 506 ~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 506 LHTILH--DNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred ceeEEE--CCEEEEEeeecceeehhhcCccccc
Confidence 222333 788889999888 56666666543
No 388
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.00 E-value=0.24 Score=45.38 Aligned_cols=136 Identities=13% Similarity=0.043 Sum_probs=82.1
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccC--------CCeEEEEEccCCCEEE-EeeCCCcEEEEe-
Q 004214 381 KDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHK--------RGIWSVEFSPVDQVVI-TASGDKTIKIWS- 450 (768)
Q Consensus 381 ~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--------~~v~~v~~s~~~~~l~-t~~~d~~i~iwd- 450 (768)
...+.-..+|+|++++-.-.|-. -.+....+....-+.+|. .--+.++|+.+.+.+. +-+.+-+|.-||
T Consensus 109 nR~NDgkvdP~Gryy~GtMad~~-~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dy 187 (310)
T KOG4499|consen 109 NRLNDGKVDPDGRYYGGTMADFG-DDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDY 187 (310)
T ss_pred cccccCccCCCCceeeeeecccc-ccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEeeeec
Confidence 44566778999998443222211 122222222222233332 2235678887765544 455566776677
Q ss_pred -CCCCce-----eEEeec---CC-CcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCC
Q 004214 451 -ISDGSC-----LKTFEG---HT-SSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKK 517 (768)
Q Consensus 451 -~~~~~~-----~~~~~~---~~-~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~ 517 (768)
..+|.. +..++. .. ...-.++...+|++.++.-..|+|...|..+|+.+..+.-+...|++++|--.
T Consensus 188 d~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 188 DCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred CCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCC
Confidence 555532 222221 11 11123445567888888888899999999999999999988999999999643
No 389
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.97 E-value=0.31 Score=50.46 Aligned_cols=92 Identities=11% Similarity=0.077 Sum_probs=61.5
Q ss_pred EeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecC----------------
Q 004214 232 SKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSS---------------- 295 (768)
Q Consensus 232 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~---------------- 295 (768)
...+......+.++...| .+.+.|+..+-|.|.++|+.++..++.++|..+.-..--......
T Consensus 300 r~~l~D~~R~~~~i~~sP-~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~ 378 (415)
T PF14655_consen 300 RFGLPDSKREGESICLSP-SGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRF 378 (415)
T ss_pred EEeeccCCceEEEEEECC-CCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcc
Confidence 334444455677777775 588999998999999999999998888877655432211001111
Q ss_pred CCEEEEEEeCCCeEEEEeCCCceEEEeee
Q 004214 296 GKILIVTGSKDNSVRLWDSESRCCVGVGT 324 (768)
Q Consensus 296 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 324 (768)
...+++-+-.-|.|.||.++++..+..+.
T Consensus 379 ~l~LvIyaprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 379 ALFLVIYAPRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred eEEEEEEeccCCeEEEEecCCCCEEEEEE
Confidence 12345556778999999999887766554
No 390
>PHA02713 hypothetical protein; Provisional
Probab=96.91 E-value=0.074 Score=58.50 Aligned_cols=225 Identities=14% Similarity=0.140 Sum_probs=108.6
Q ss_pred cEEEEECCCceeeeeeeCCccce-EEEeeeeecCCCEEEEEEeCC------CeEEEEeCCCceEEEeeecccCcE-EEEE
Q 004214 263 QVQVYDLSSMSCSYVLAGHSEIV-LCLDTCALSSGKILIVTGSKD------NSVRLWDSESRCCVGVGTGHMGAV-GAVA 334 (768)
Q Consensus 263 ~i~i~d~~~~~~~~~~~~~~~~v-~~l~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~v-~~~~ 334 (768)
.+..||..+..-...-....... .++ ..- ++.+++.|+.+ ..+..||..++.......-....- .+++
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~---a~l-~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~ 348 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYAS---AIV-DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLA 348 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEE---EEE-CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEE
Confidence 56778877765332111111110 111 122 34456777653 347788988775433222111111 1222
Q ss_pred EecCCCcEEEEEeCCC-----eEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCC-------
Q 004214 335 FSKKLQNFLVSGSSDH-----TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDR------- 402 (768)
Q Consensus 335 ~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg------- 402 (768)
. -+ ..+.+.||.++ ++..||.....- ...............+ .-+|++.+.|+.++
T Consensus 349 ~-~~-g~IYviGG~~~~~~~~sve~Ydp~~~~W--------~~~~~mp~~r~~~~~~--~~~g~IYviGG~~~~~~~~~~ 416 (557)
T PHA02713 349 V-ID-DTIYAIGGQNGTNVERTIECYTMGDDKW--------KMLPDMPIALSSYGMC--VLDQYIYIIGGRTEHIDYTSV 416 (557)
T ss_pred E-EC-CEEEEECCcCCCCCCceEEEEECCCCeE--------EECCCCCcccccccEE--EECCEEEEEeCCCcccccccc
Confidence 2 23 33667777654 477788764311 1100000000111112 23678888887653
Q ss_pred ----------------cEEEEeCCCCce--EEEEeccCCCeEEEEEccCCCEEEEeeCC------CcEEEEeCCC-C--c
Q 004214 403 ----------------TACVWRLPDLVS--VVTFRGHKRGIWSVEFSPVDQVVITASGD------KTIKIWSISD-G--S 455 (768)
Q Consensus 403 ----------------~i~i~d~~~~~~--~~~~~~~~~~v~~v~~s~~~~~l~t~~~d------~~i~iwd~~~-~--~ 455 (768)
.+..||..+.+- +..+....... ++ ..-++++.+.|+.+ ..+..||..+ . .
T Consensus 417 ~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~-~~-~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~ 494 (557)
T PHA02713 417 HHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRP-GV-VSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWE 494 (557)
T ss_pred cccccccccccccccceEEEECCCCCeEeecCCCCcccccC-cE-EEECCEEEEEeCCCCCCccceeEEEecCCCCCCee
Confidence 467788765432 22221111111 12 22246777777654 2467899876 3 3
Q ss_pred eeEEeecCCCcEEEEEEEeCCCEEEEEeCCC--cEEEEECCCCeEEEEeccCCC
Q 004214 456 CLKTFEGHTSSVLRASFLTRGAQIVSCGADG--LVKLWTVRTGECIATYDKHED 507 (768)
Q Consensus 456 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~ 507 (768)
.+..+.........+ .-+|+..++||.+| .+-.||+.+++-......|..
T Consensus 495 ~~~~m~~~r~~~~~~--~~~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~~~~~ 546 (557)
T PHA02713 495 LITTTESRLSALHTI--LHDNTIMMLHCYESYMLQDTFNVYTYEWNHICHQHSN 546 (557)
T ss_pred EccccCcccccceeE--EECCEEEEEeeecceeehhhcCcccccccchhhhcCC
Confidence 334433222222212 23677888898888 778888887775554444543
No 391
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.80 E-value=0.13 Score=56.56 Aligned_cols=224 Identities=15% Similarity=0.164 Sum_probs=116.3
Q ss_pred CEEEEEEeCC------CeEEEEeCCCceEEEeeec-ccCcEEEEEEecCCCcEEEEEeCC------CeEEEEeCCCCCCC
Q 004214 297 KILIVTGSKD------NSVRLWDSESRCCVGVGTG-HMGAVGAVAFSKKLQNFLVSGSSD------HTIKVWSFDGLSDD 363 (768)
Q Consensus 297 ~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~ 363 (768)
+.+++.|+.+ ..+..||..++.......- ....-.++++..+ .+.++|+.| .++..||.....-
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~--~lYv~GG~~~~~~~l~~ve~YD~~~~~W- 361 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNG--KLYVVGGYDSGSDRLSSVERYDPRTNQW- 361 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECC--EEEEEccccCCCcccceEEEecCCCCce-
Confidence 4456777666 3678888887754433222 2222334444443 478888888 3466677654321
Q ss_pred CccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCC-----cEEEEeCCCCce--EEEEeccCCCeEEEEEccCCCE
Q 004214 364 AEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDR-----TACVWRLPDLVS--VVTFRGHKRGIWSVEFSPVDQV 436 (768)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-----~i~i~d~~~~~~--~~~~~~~~~~v~~v~~s~~~~~ 436 (768)
............. -...-+|.+.|+|+.|| ++-.||..+.+- +..+.........+. -+|.+
T Consensus 362 -------~~~a~M~~~R~~~--~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~--~~g~i 430 (571)
T KOG4441|consen 362 -------TPVAPMNTKRSDF--GVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAV--LGGKL 430 (571)
T ss_pred -------eccCCccCccccc--eeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEE--ECCEE
Confidence 1111011111111 11122788999999997 477788765432 221211111222222 24777
Q ss_pred EEEeeCCC------cEEEEeCCCCcee--EEeecCCCcEEEEEEEeCCCEEEEEeCCCc-----EEEEECCCCeEEEE--
Q 004214 437 VITASGDK------TIKIWSISDGSCL--KTFEGHTSSVLRASFLTRGAQIVSCGADGL-----VKLWTVRTGECIAT-- 501 (768)
Q Consensus 437 l~t~~~d~------~i~iwd~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~-----i~iwd~~~~~~~~~-- 501 (768)
.++|+.++ ++..||..+++-. ..+........ .-.-++...+.||.||. |..||..+.+....
T Consensus 431 Yi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g--~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~ 508 (571)
T KOG4441|consen 431 YIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG--VAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAP 508 (571)
T ss_pred EEEcCcCCCccccceEEEEcCCCCceeecCCcccccccce--EEEECCEEEEECCccCCCccceEEEEcCCCCceeEccc
Confidence 88887554 4678887665422 22211111111 22346677788887763 77788877654433
Q ss_pred eccCCCcEEEEEEcCCCCEEEEEeCCCc-----EEEEEcCCH
Q 004214 502 YDKHEDKIWALAVGKKTEMFATGGSDAL-----VNLWHDSTA 538 (768)
Q Consensus 502 ~~~~~~~v~~l~~s~~~~~l~s~~~dg~-----v~vw~~~~~ 538 (768)
.......+....+ ++...++||.||. |..||..+.
T Consensus 509 m~~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 509 MTSPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred CccccccccEEEE--CCEEEEEecccCccccceeEEcCCCCC
Confidence 2222222222222 6777788888775 566666554
No 392
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.76 E-value=0.18 Score=55.45 Aligned_cols=228 Identities=14% Similarity=0.101 Sum_probs=114.0
Q ss_pred CCCEEEEEeCC------CcEEEEECCCceeeeeeeC-CccceEEEeeeeecCCCEEEEEEeCC------CeEEEEeCCCc
Q 004214 251 EEQYLAVATNI------EQVQVYDLSSMSCSYVLAG-HSEIVLCLDTCALSSGKILIVTGSKD------NSVRLWDSESR 317 (768)
Q Consensus 251 ~~~~l~~~~~~------~~i~i~d~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~ 317 (768)
.+.++++|+.. ..+..||..++.-.....- ....-.++ ... ++.+.++|+.| ..+..||..++
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~---~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~ 359 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGV---AVL-NGKLYVVGGYDSGSDRLSSVERYDPRTN 359 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccE---EEE-CCEEEEEccccCCCcccceEEEecCCCC
Confidence 45566777665 3577888877643322211 11112222 222 33568888888 36778888877
Q ss_pred eEEEeeecccCcEEEEEEecCCCcEEEEEeCCCe-----EEEEeCCCCCCCCccccccceeeEeeccCCCeEEEE-EccC
Q 004214 318 CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHT-----IKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLA-VAPN 391 (768)
Q Consensus 318 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~-----i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~s~~ 391 (768)
+......-.... .......-+..+.++|+.||. +..||.....-.. .. .........+ ..-+
T Consensus 360 ~W~~~a~M~~~R-~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~--------va---~m~~~r~~~gv~~~~ 427 (571)
T KOG4441|consen 360 QWTPVAPMNTKR-SDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTP--------VA---PMLTRRSGHGVAVLG 427 (571)
T ss_pred ceeccCCccCcc-ccceeEEECCEEEEEeccccccccccEEEecCCCCcccc--------cC---CCCcceeeeEEEEEC
Confidence 654422211111 111111212447888888865 5566655432111 11 0111112222 2237
Q ss_pred CCEEEEEeCCC------cEEEEeCCCCc--eEEEEeccCCCeEEEEEccCCCEEEEeeCCCc-----EEEEeCCCCceeE
Q 004214 392 DSLVCTGSQDR------TACVWRLPDLV--SVVTFRGHKRGIWSVEFSPVDQVVITASGDKT-----IKIWSISDGSCLK 458 (768)
Q Consensus 392 ~~~l~~~~~dg------~i~i~d~~~~~--~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~-----i~iwd~~~~~~~~ 458 (768)
|.+.++|+.++ ++..||..+.. .+..+........... -++.+.+.|+.|+. |..||..+.+-..
T Consensus 428 g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~--~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~ 505 (571)
T KOG4441|consen 428 GKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAV--LNGKIYVVGGFDGTSALSSVERYDPETNQWTM 505 (571)
T ss_pred CEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEE--ECCEEEEECCccCCCccceEEEEcCCCCceeE
Confidence 88888888665 46778876653 2222222222222222 24778888887763 6778876554322
Q ss_pred EeecCCCcEEEEEE-EeCCCEEEEEeCCC-----cEEEEECCCCe
Q 004214 459 TFEGHTSSVLRASF-LTRGAQIVSCGADG-----LVKLWTVRTGE 497 (768)
Q Consensus 459 ~~~~~~~~v~~~~~-s~~~~~l~s~~~dg-----~i~iwd~~~~~ 497 (768)
. ..-..+...+.. .-++...++|+.|| +|-.||..+.+
T Consensus 506 v-~~m~~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 506 V-APMTSPRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETDT 549 (571)
T ss_pred c-ccCccccccccEEEECCEEEEEecccCccccceeEEcCCCCCc
Confidence 2 111112222222 23456667777776 45666665544
No 393
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.74 E-value=0.36 Score=45.72 Aligned_cols=231 Identities=16% Similarity=0.190 Sum_probs=133.9
Q ss_pred cCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCe-EEEEeCCCCCCCCccccccce
Q 004214 294 SSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHT-IKVWSFDGLSDDAEQPMNLKA 372 (768)
Q Consensus 294 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~ 372 (768)
.++...+++.+.+|.+.- ... -...-..++++|..+.-++.+-.-|+ ..++|.......... ....
T Consensus 45 ~dgs~g~a~~~eaGk~v~----------~~~-lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~--~s~~ 111 (366)
T COG3490 45 RDGSFGAATLSEAGKIVF----------ATA-LPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTL--VSQE 111 (366)
T ss_pred cCCceeEEEEccCCceee----------eee-cccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEE--eccc
Confidence 455555666666665532 110 11223356677766655666655555 356777654322111 1111
Q ss_pred eeEeeccCCCeEEEEEccCCCEEEEEeCC-----CcEEEEeCCCC-ceEEEEeccCCCeEEEEEccCCCEEEEeeCC---
Q 004214 373 KAVVAAHGKDINSLAVAPNDSLVCTGSQD-----RTACVWRLPDL-VSVVTFRGHKRGIWSVEFSPVDQVVITASGD--- 443 (768)
Q Consensus 373 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~i~d~~~~-~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d--- 443 (768)
..-+.+| -.|||||.+|...-.| |.|-|||.+.+ ..+..+..|.-....+.+.+||+.++.+...
T Consensus 112 ~RHfyGH------Gvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIet 185 (366)
T COG3490 112 GRHFYGH------GVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIET 185 (366)
T ss_pred Cceeecc------cccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceec
Confidence 1222334 3689999998876443 67999998754 5677888898888999999999999887541
Q ss_pred ---------------CcEEEEeCCCCceeEEe--e--cCCCcEEEEEEEeCCCEEEEEeCCCc-----EEEEECCCCeEE
Q 004214 444 ---------------KTIKIWSISDGSCLKTF--E--GHTSSVLRASFLTRGAQIVSCGADGL-----VKLWTVRTGECI 499 (768)
Q Consensus 444 ---------------~~i~iwd~~~~~~~~~~--~--~~~~~v~~~~~s~~~~~l~s~~~dg~-----i~iwd~~~~~~~ 499 (768)
-++.+.|..+|.++.+. . -+.-+|..+..-+||+.++-+-..|. -.+=-...|+.+
T Consensus 186 hpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l 265 (366)
T COG3490 186 HPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPL 265 (366)
T ss_pred ccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcC
Confidence 12334444455544332 2 34456777888788876665544331 111111234444
Q ss_pred EEecc-------CCCcEEEEEEcCCCCEEEEEeC-CCcEEEEEcCCHHHHHH
Q 004214 500 ATYDK-------HEDKIWALAVGKKTEMFATGGS-DALVNLWHDSTAAEREE 543 (768)
Q Consensus 500 ~~~~~-------~~~~v~~l~~s~~~~~l~s~~~-dg~v~vw~~~~~~~~~~ 543 (768)
.-+.. ...-|-+++.+.+..+++..+- .+...+||..++....+
T Consensus 266 ~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~ 317 (366)
T COG3490 266 EFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSE 317 (366)
T ss_pred cccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEec
Confidence 44332 2234667888776666665554 44578899998876543
No 394
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.72 E-value=0.0036 Score=56.81 Aligned_cols=102 Identities=17% Similarity=0.269 Sum_probs=68.0
Q ss_pred EEeecCCCcEEEEECCC-CEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCcc-ceeEEE
Q 004214 3 ALLEGADRKVLVWDVDG-GFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHF-SRVTSM 80 (768)
Q Consensus 3 latg~~dg~i~vwd~~~-~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~-~~V~~l 80 (768)
+++|+.+|.|.+|++.. |........-...|.++.-.-+ ...+..+++.||.|+-|++..++.+.....|. .++..+
T Consensus 73 ~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~-~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ 151 (238)
T KOG2444|consen 73 LMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGR-DSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEEL 151 (238)
T ss_pred EEeecccceEEEecCCccchHHHhhhcccccceecccccc-ccceeEEeccCCceeeeccccCceeeeeccccCCCccee
Confidence 67899999999999852 1111112222333444332222 22358899999999999999999988888787 566666
Q ss_pred EEcCCCCEEEEE--eCCCeEEEEECCC
Q 004214 81 AITSDGSTLISA--GRDKVVNLWDLRD 105 (768)
Q Consensus 81 ~fs~d~~~L~s~--~~dg~i~vWd~~~ 105 (768)
..+..+..++++ |.|..++.|++..
T Consensus 152 ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 152 IVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred EEecCCceEEeeccccchhhhhcchhh
Confidence 666666666666 6677777777754
No 395
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.69 E-value=1.1 Score=47.59 Aligned_cols=74 Identities=23% Similarity=0.275 Sum_probs=47.3
Q ss_pred cEEEEEEeeCCCccEEEEEeCCC----cEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEeC-----------CC
Q 004214 32 VVSSILFHPDTDKSLLFSGSDDA----TVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGR-----------DK 96 (768)
Q Consensus 32 ~V~~l~~spd~~~~~l~sg~~dg----~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~-----------dg 96 (768)
.+...++||||++ ++++-+..| .|++.|+.+|+.+...- .......+.|.+|++.|+-... ..
T Consensus 125 ~~~~~~~Spdg~~-la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i-~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 125 SLGGFSVSPDGKR-LAYSLSDGGSEWYTLRVFDLETGKFLPDGI-ENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEEEETTTSSE-EEEEEEETTSSEEEEEEEETTTTEEEEEEE-EEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred EeeeeeECCCCCE-EEEEecCCCCceEEEEEEECCCCcCcCCcc-cccccceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence 4446788999987 223334444 49999999998765321 1122234999999988776543 23
Q ss_pred eEEEEECCCCe
Q 004214 97 VVNLWDLRDYS 107 (768)
Q Consensus 97 ~i~vWd~~~~~ 107 (768)
.|..|.+.+..
T Consensus 203 ~v~~~~~gt~~ 213 (414)
T PF02897_consen 203 QVYRHKLGTPQ 213 (414)
T ss_dssp EEEEEETTS-G
T ss_pred EEEEEECCCCh
Confidence 47778876654
No 396
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.64 E-value=0.0076 Score=66.65 Aligned_cols=97 Identities=13% Similarity=0.252 Sum_probs=75.4
Q ss_pred CCCEEEEEeCCCcEEEEeCCCC-ceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEE
Q 004214 391 NDSLVCTGSQDRTACVWRLPDL-VSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLR 469 (768)
Q Consensus 391 ~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~ 469 (768)
.+..++.|+..|.+...|.... .+...=..-.++|++++|+.+|.+++.|-.+|.|.+||+..++.++.+.-|..+.+.
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~ 177 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG 177 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence 4567888998899988887653 221221224579999999999999999999999999999999999998877777666
Q ss_pred EEE---EeCCCEEEEEeCCCc
Q 004214 470 ASF---LTRGAQIVSCGADGL 487 (768)
Q Consensus 470 ~~~---s~~~~~l~s~~~dg~ 487 (768)
+-+ ..++..++++...|.
T Consensus 178 vi~v~~t~~nS~llt~D~~Gs 198 (1206)
T KOG2079|consen 178 VIFVGRTSQNSKLLTSDTGGS 198 (1206)
T ss_pred EEEEEEeCCCcEEEEccCCCc
Confidence 554 345667888888785
No 397
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.61 E-value=0.72 Score=44.92 Aligned_cols=147 Identities=14% Similarity=0.099 Sum_probs=88.7
Q ss_pred cEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEe
Q 004214 329 AVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWR 408 (768)
Q Consensus 329 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d 408 (768)
.+.+.++++++..+.+....++.-.+|-...... ..... ....+..-.|++++...++...+....++.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~---------~~~~~--~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~ 93 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP---------VRPVL--TGGSLTRPSWDPDGWVWTVDDGSGGVRVVR 93 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc---------ceeec--cCCccccccccCCCCEEEEEcCCCceEEEE
Confidence 6888999999886555553333334443332211 11111 234677889999988877777666667664
Q ss_pred -CCCCceE-EEEecc--CCCeEEEEEccCCCEEEEee---CCCcEEEEeCC---CC------ceeEEeecCCCcEEEEEE
Q 004214 409 -LPDLVSV-VTFRGH--KRGIWSVEFSPVDQVVITAS---GDKTIKIWSIS---DG------SCLKTFEGHTSSVLRASF 472 (768)
Q Consensus 409 -~~~~~~~-~~~~~~--~~~v~~v~~s~~~~~l~t~~---~d~~i~iwd~~---~~------~~~~~~~~~~~~v~~~~~ 472 (768)
..++... ..+... ...|+++.+||||..++... .++.|.+--+. .+ ..+.........++.+.|
T Consensus 94 ~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W 173 (253)
T PF10647_consen 94 DSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAW 173 (253)
T ss_pred ecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeee
Confidence 3333221 112211 12899999999998877665 34777776543 23 112222234568899999
Q ss_pred EeCCCEEEEEeCCC
Q 004214 473 LTRGAQIVSCGADG 486 (768)
Q Consensus 473 s~~~~~l~s~~~dg 486 (768)
.+++.+++.+...+
T Consensus 174 ~~~~~L~V~~~~~~ 187 (253)
T PF10647_consen 174 SDDSTLVVLGRSAG 187 (253)
T ss_pred cCCCEEEEEeCCCC
Confidence 99998877766544
No 398
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.50 E-value=0.8 Score=43.49 Aligned_cols=244 Identities=14% Similarity=0.126 Sum_probs=134.8
Q ss_pred eeEEEEecCCCCEEEEEeCCCc-EEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEe----CCCeEEEEeCCC
Q 004214 242 ILDLKFLGEEEQYLAVATNIEQ-VQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGS----KDNSVRLWDSES 316 (768)
Q Consensus 242 i~~~~~~~~~~~~l~~~~~~~~-i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~----~dg~i~iwd~~~ 316 (768)
-..++|+|....-++.+-.-|+ ..++|....+...++...++.-.-=..++++++..+.+|-. .-|.|-+||...
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~ 149 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDARE 149 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccc
Confidence 3457777777777888777665 45689888877666544333222222337777776444321 237899999875
Q ss_pred c-eEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEE--------eCCCCCCCCc----cccccceeeEee--ccCC
Q 004214 317 R-CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVW--------SFDGLSDDAE----QPMNLKAKAVVA--AHGK 381 (768)
Q Consensus 317 ~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iw--------d~~~~~~~~~----~~~~~~~~~~~~--~~~~ 381 (768)
+ +.+..+..|.-.-..+.+.+||..++++.+ -|..- +++.++.... ..-....+.++. .+..
T Consensus 150 ~fqrvgE~~t~GiGpHev~lm~DGrtlvvanG---GIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~l 226 (366)
T COG3490 150 GFQRVGEFSTHGIGPHEVTLMADGRTLVVANG---GIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQL 226 (366)
T ss_pred ccceecccccCCcCcceeEEecCCcEEEEeCC---ceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhc
Confidence 3 456677778777788999999885444332 23332 2221111000 000111111122 3455
Q ss_pred CeEEEEEccCCCEEEEEeCCCcE-----EEEeCCCCceEEEEe-------ccCCCeEEEEEccCCCEEEEee-CCCcEEE
Q 004214 382 DINSLAVAPNDSLVCTGSQDRTA-----CVWRLPDLVSVVTFR-------GHKRGIWSVEFSPVDQVVITAS-GDKTIKI 448 (768)
Q Consensus 382 ~i~~~~~s~~~~~l~~~~~dg~i-----~i~d~~~~~~~~~~~-------~~~~~v~~v~~s~~~~~l~t~~-~d~~i~i 448 (768)
.|..++..+||..++-+-..|.- .+=-...++++.-+. .....|-+++.+.+..+++..+ ..+...+
T Consensus 227 SiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi 306 (366)
T COG3490 227 SIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVI 306 (366)
T ss_pred ceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEE
Confidence 68888988888877665544321 111112223332222 1234577888887665555544 4456779
Q ss_pred EeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEE
Q 004214 449 WSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWT 492 (768)
Q Consensus 449 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd 492 (768)
||..+|..+..-.-.. . .-..+...-++..+.+|.+.++.
T Consensus 307 ~da~tG~vv~~a~l~d--a--aGva~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 307 WDAATGAVVSEAALPD--A--AGVAAAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred EEcCCCcEEecccccc--c--ccceeccCceEEecCCceEEecc
Confidence 9999998765432111 1 11223344455666678777763
No 399
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=96.45 E-value=1.9 Score=47.21 Aligned_cols=403 Identities=13% Similarity=0.142 Sum_probs=173.3
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEECCC-------Ceeeeeeec--ceeEeeEEecC--CCCCccccccccchhhhhcc
Q 004214 77 VTSMAITSDGSTLISAGRDKVVNLWDLRD-------YSCKLTVPT--YEMVEAVCAIP--PGSAFDSFLSSYNQQTIKKK 145 (768)
Q Consensus 77 V~~l~fs~d~~~L~s~~~dg~i~vWd~~~-------~~~~~~~~~--~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 145 (768)
-..++..|.|+.++.+..++.+.++-+.. .......+. ...+..++|.. .+.....
T Consensus 46 G~~l~vDP~~R~i~v~a~e~~~~v~~l~~~~~~~~~~~~~~~~pi~s~~~i~~~~FL~~~~~~~~p~------------- 112 (504)
T PF10433_consen 46 GQYLAVDPSGRCIAVSAYEGNFLVYPLNRSLDSDIAFSPHINSPIKSEGNILDMCFLHPSVGYDNPT------------- 112 (504)
T ss_dssp --EEEE-TTSSEEEEEEBTTEEEEEE-SS----T-TT---EEEE--S-SEEEEEEEES---S-SS-E-------------
T ss_pred CcEEEECCcCCEEEEEecCCeEEEEEecccccccccccccccccccCCceEEEEEEEecccCCCCce-------------
Confidence 45688999999999999999999999887 111111222 44567778876 1111000
Q ss_pred cCCcceEEEEeeCC--cEEEE--EEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeecc
Q 004214 146 RRSLEIHFITVGER--GIVRM--WNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVE 221 (768)
Q Consensus 146 ~~~~~~~~~~~~~~--g~i~i--wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~ 221 (768)
..++-.... ..+.. |+...+-.............. ........+.-.|.+...+.++.++.+.+-+...
T Consensus 113 -----la~L~~~~~~~~~~~~y~w~~~~~l~~~~~~~~~~~~l~--~~~~~p~~LIPlp~~~ggllV~~~~~i~y~~~~~ 185 (504)
T PF10433_consen 113 -----LAILYVDSQRRTHLVTYEWSLDDGLNHVISKSTLPIRLP--NEDELPSFLIPLPNPPGGLLVGGENIIIYKNHLI 185 (504)
T ss_dssp -----EEEEEEETT-EEEEEEEE--------EETTTTEEEE--E--EEE-TTEEEEEE-TTT-SEEEEESSEEEEEE---
T ss_pred -----EEEEEEEecccceeEEEeeecccccceeeeecccccccc--ccCCCccEEEEcCCCCcEEEEECCEEEEEecccc
Confidence 011111121 12333 444443111111111110000 0001113344445555555566666555543222
Q ss_pred CcccceeeEEEeeecccCCceeEEEE------ecCCCCEEEEEeCCCcEEEEECCCcee--eeeeeCC-ccceEEEeeee
Q 004214 222 VPEKKMELILSKRLVGYNEEILDLKF------LGEEEQYLAVATNIEQVQVYDLSSMSC--SYVLAGH-SEIVLCLDTCA 292 (768)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~i~~~~~------~~~~~~~l~~~~~~~~i~i~d~~~~~~--~~~~~~~-~~~v~~l~~~~ 292 (768)
...................-+..... ...+...++.+..+|.+....+..... ....-+. .....++. +
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~--~ 263 (504)
T PF10433_consen 186 GSGDYSFLSIPSPPSSSSSLWTSWARPERNISYDKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLT--Y 263 (504)
T ss_dssp ---TTEEEEE--H-HHHTS-EEEEEE------SSTTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEE--E
T ss_pred cccccccccccCCccCCCceEEEEEeccccceecCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEE--E
Confidence 11100011111000111222233322 345678899999999999987765441 1122222 34444554 4
Q ss_pred ecCCCEEEEEEeCC--CeEEEEeCCCceEEEeeecccCcEEEEEEecC---CCc------EEEEEe---CCCeEEEEeCC
Q 004214 293 LSSGKILIVTGSKD--NSVRLWDSESRCCVGVGTGHMGAVGAVAFSKK---LQN------FLVSGS---SDHTIKVWSFD 358 (768)
Q Consensus 293 ~~~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~---~~~------~l~s~~---~dg~i~iwd~~ 358 (768)
..+++.+++.|+.- +.+..|....-+.+..+. .-+||..+++.+. +.. .+++++ .+|.+++..-.
T Consensus 264 l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~-N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~G 342 (504)
T PF10433_consen 264 LKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLP-NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNG 342 (504)
T ss_dssp ESTT--EEEEEESSS-EEEEEEESESEEEEEEE-----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEES
T ss_pred EcCCCEEEEEEEecCCcEEEEEeCCCcEEEEecc-CcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEecc
Confidence 44443346667654 455556644445555544 4578888888532 221 345554 46788887532
Q ss_pred CCCCCCccccccceeeEeecc--CCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCC---CCceEEEEe--ccC---CCeEE
Q 004214 359 GLSDDAEQPMNLKAKAVVAAH--GKDINSLAVAP-NDSLVCTGSQDRTACVWRLP---DLVSVVTFR--GHK---RGIWS 427 (768)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~---~~~~~~~~~--~~~---~~v~~ 427 (768)
-. .. ......... -..+..+.... ++.+++.+..+. -+++.+. ..+.+..+. +.. ..+.+
T Consensus 343 i~-------~~-~~~~~~~~l~~v~~iW~l~~~~~~~~~lv~S~~~~-T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~ 413 (504)
T PF10433_consen 343 IG-------IE-GLELASSELPGVTGIWTLKLSSSDHSYLVLSFPNE-TRVLQISEGDDGEEVEEVEEDGFDTDEPTLAA 413 (504)
T ss_dssp BE-------EE---EEEEEEESTEEEEEEE-SSSSSBSEEEEEESSE-EEEEEES----SSEEEEE---TS-SSS-EEEE
T ss_pred CC-------ce-eeeeeccCCCCceEEEEeeecCCCceEEEEEcCCc-eEEEEEecccCCcchhhhhhccCCCCCCCeEE
Confidence 10 00 001111111 12233333222 245676666554 3455443 233332221 111 12222
Q ss_pred EEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecC-CCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEec---
Q 004214 428 VEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGH-TSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD--- 503 (768)
Q Consensus 428 v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--- 503 (768)
-.+. +..++=... ..|++.+...++....+... ...|.+.+ -++.+++.+..+|.+.++.+..........
T Consensus 414 ~~~~--~~~ivQVt~-~~i~l~~~~~~~~~~~w~~~~~~~I~~a~--~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (504)
T PF10433_consen 414 GNVG--DGRIVQVTP-KGIRLIDLEDGKLTQEWKPPAGSIIVAAS--INDPQVLVALSGGELVYFELDDNKISVSDNDET 488 (504)
T ss_dssp EEET--TTEEEEEES-SEEEEEESSSTSEEEEEE-TTS---SEEE--ESSSEEEEEE-TTEEEEEEEETTEEEEEEE---
T ss_pred EEcC--CCeEEEEec-CeEEEEECCCCeEEEEEeCCCCCeEEEEE--ECCCEEEEEEeCCcEEEEEEECCceeeeeeccc
Confidence 2222 334443333 45888888777777666433 33443333 345677777778999999988776643322
Q ss_pred --cCCCcEEEEEEcC
Q 004214 504 --KHEDKIWALAVGK 516 (768)
Q Consensus 504 --~~~~~v~~l~~s~ 516 (768)
.....|.|+...|
T Consensus 489 ~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 489 ILELDNEISCLSIEP 503 (504)
T ss_dssp -EE-SS-EEEEE---
T ss_pred cccCCCceEEEEeCC
Confidence 1467788888776
No 400
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.40 E-value=1.5 Score=45.58 Aligned_cols=154 Identities=16% Similarity=0.204 Sum_probs=86.6
Q ss_pred eEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccC-CCceEEEEecCeEEEEeeccCccc----
Q 004214 151 IHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPS-NQGLLCVTADQQLLLYTTVEVPEK---- 225 (768)
Q Consensus 151 ~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~dg~i~~~~~~~~~~~---- 225 (768)
..+++|+..|.+++|++..+... ..+.........+--.+....|.+. ....+++-.-..+.+|.+......
T Consensus 38 d~IivGS~~G~LrIy~P~~~~~~---~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g 114 (418)
T PF14727_consen 38 DKIIVGSYSGILRIYDPSGNEFQ---PEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHG 114 (418)
T ss_pred cEEEEeccccEEEEEccCCCCCC---CccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccC
Confidence 48999999999999999554211 0111111111111122222233333 445677788888888888443221
Q ss_pred ---ceeeEEEeeecccCCceeEEEE---ecCC-CCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCE
Q 004214 226 ---KMELILSKRLVGYNEEILDLKF---LGEE-EQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKI 298 (768)
Q Consensus 226 ---~~~~~~~~~~~~~~~~i~~~~~---~~~~-~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~ 298 (768)
...+.....+ ......+++ -... ..++++-+-||.+.+|+-+.......+++ .--..++. +.+....
T Consensus 115 ~~~~L~~~yeh~l---~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~--Y~~~tDs 188 (418)
T PF14727_consen 115 NQYQLELIYEHSL---QRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLC--YCPRTDS 188 (418)
T ss_pred cEEEEEEEEEEec---ccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeE--EeecCCE
Confidence 1122222222 222333333 2222 57899999999999999888776655554 22222333 3444554
Q ss_pred EEEEEeCCCeEEEEeC
Q 004214 299 LIVTGSKDNSVRLWDS 314 (768)
Q Consensus 299 ~l~~~~~dg~i~iwd~ 314 (768)
|++++.+..+..|..
T Consensus 189 -fvt~sss~~l~~Yky 203 (418)
T PF14727_consen 189 -FVTASSSWTLECYKY 203 (418)
T ss_pred -EEEecCceeEEEecH
Confidence 888888888888864
No 401
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.23 E-value=0.068 Score=54.78 Aligned_cols=137 Identities=12% Similarity=0.089 Sum_probs=93.9
Q ss_pred EEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCC-------EEEEeeCCCcEEEEeCCCCc--eeEEeecCC
Q 004214 394 LVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQ-------VVITASGDKTIKIWSISDGS--CLKTFEGHT 464 (768)
Q Consensus 394 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~-------~l~t~~~d~~i~iwd~~~~~--~~~~~~~~~ 464 (768)
++..+.....++-.|++.|+.+....-+.. |+-+.+.|+.+ --+.|-.|..|.-||.+-.. .+..-++|.
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kq 426 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQ 426 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccc
Confidence 344455556788899999999999887666 77788888653 12346677889999986322 232333332
Q ss_pred ----CcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEE-EEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004214 465 ----SSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECI-ATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 534 (768)
Q Consensus 465 ----~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~ 534 (768)
....|.+-..+| ++++|+.+|.|++||- .+... ..+.+...+|..+..+.+|.+|++.+..- +.+-+
T Consensus 427 y~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~ty-LlLi~ 498 (644)
T KOG2395|consen 427 YSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCKTY-LLLID 498 (644)
T ss_pred cccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEecccE-EEEEE
Confidence 123333333444 8999999999999996 55433 34567888999999999999988777554 44433
No 402
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.22 E-value=0.31 Score=47.46 Aligned_cols=145 Identities=16% Similarity=0.104 Sum_probs=92.3
Q ss_pred CeEEEEEccCCCEEEEEe---CCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEe-CCCCcee
Q 004214 382 DINSLAVAPNDSLVCTGS---QDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWS-ISDGSCL 457 (768)
Q Consensus 382 ~i~~~~~s~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd-~~~~~~~ 457 (768)
.+.+.++++++..++... ....++++.. +....... ....++.-.|++++...+....+...+++. ..++...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 678999999999887766 2234555543 33222221 233778889999988888777777777774 3333322
Q ss_pred -EEeec--CCCcEEEEEEEeCCCEEEEEe---CCCcEEEEECC---CC------eEEEEeccCCCcEEEEEEcCCCCEEE
Q 004214 458 -KTFEG--HTSSVLRASFLTRGAQIVSCG---ADGLVKLWTVR---TG------ECIATYDKHEDKIWALAVGKKTEMFA 522 (768)
Q Consensus 458 -~~~~~--~~~~v~~~~~s~~~~~l~s~~---~dg~i~iwd~~---~~------~~~~~~~~~~~~v~~l~~s~~~~~l~ 522 (768)
..+.. -...|+.+.+||||..++... .++.|.+=-+. .+ ..+.........+.+++|.+++.+++
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V 181 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVV 181 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEE
Confidence 12221 112899999999999887665 34677776543 23 12222223356789999999998877
Q ss_pred EEeCCCc
Q 004214 523 TGGSDAL 529 (768)
Q Consensus 523 s~~~dg~ 529 (768)
.+...+.
T Consensus 182 ~~~~~~~ 188 (253)
T PF10647_consen 182 LGRSAGG 188 (253)
T ss_pred EeCCCCC
Confidence 7665443
No 403
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.19 E-value=2.1 Score=48.66 Aligned_cols=207 Identities=12% Similarity=0.064 Sum_probs=115.1
Q ss_pred CCEEEEEEeCCCeEEEEeCCCceEEEeeecccCc--------EEEEEEecC---------------CCcEEEEEeCCCeE
Q 004214 296 GKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGA--------VGAVAFSKK---------------LQNFLVSGSSDHTI 352 (768)
Q Consensus 296 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--------v~~~~~~~~---------------~~~~l~s~~~dg~i 352 (768)
++. ++.++.++.|.-.|..+|+.+..+...... ...+++... ....++.++.|+.+
T Consensus 194 gg~-lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~L 272 (764)
T TIGR03074 194 GDT-LYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARL 272 (764)
T ss_pred CCE-EEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeE
Confidence 444 666777888999999988887776533211 112222211 12257788889998
Q ss_pred EEEeCCCCCCCCccccccceee--EeeccCCCeEEEEEcc--CCCEEEEEeC----------CCcEEEEeCCCCceEEEE
Q 004214 353 KVWSFDGLSDDAEQPMNLKAKA--VVAAHGKDINSLAVAP--NDSLVCTGSQ----------DRTACVWRLPDLVSVVTF 418 (768)
Q Consensus 353 ~iwd~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~s~--~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~ 418 (768)
.-.|..++.............. ........-..+.-+| .+..+++|+. +|.|+-+|..+++.+-.+
T Consensus 273 iALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 273 IALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 8888876643211100000000 0000000001112222 2345666643 688999999999988776
Q ss_pred ecc---------C--------CCe-EEEEEccCCCEEEEeeC------------------CCcEEEEeCCCCceeEEeec
Q 004214 419 RGH---------K--------RGI-WSVEFSPVDQVVITASG------------------DKTIKIWSISDGSCLKTFEG 462 (768)
Q Consensus 419 ~~~---------~--------~~v-~~v~~s~~~~~l~t~~~------------------d~~i~iwd~~~~~~~~~~~~ 462 (768)
..- . ..+ ..+++.|...+++.+.. .+.|.-.|.++|+..-.++.
T Consensus 353 ~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~ 432 (764)
T TIGR03074 353 DPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQT 432 (764)
T ss_pred ecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecc
Confidence 521 0 011 23445555444444221 24566678888888877764
Q ss_pred CCCc---------EEEEEEEe-CCC---EEEEEeCCCcEEEEECCCCeEEEEec
Q 004214 463 HTSS---------VLRASFLT-RGA---QIVSCGADGLVKLWTVRTGECIATYD 503 (768)
Q Consensus 463 ~~~~---------v~~~~~s~-~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~ 503 (768)
.... ..-+.+.. +|+ .++.++.+|.+.++|.++|+.+....
T Consensus 433 ~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 433 VHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred cCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence 2111 11122322 563 78999999999999999999887664
No 404
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.17 E-value=1.3 Score=42.43 Aligned_cols=181 Identities=13% Similarity=0.107 Sum_probs=111.1
Q ss_pred EEEEEEecCCCcEEEEEeCCC--eEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEE
Q 004214 330 VGAVAFSKKLQNFLVSGSSDH--TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVW 407 (768)
Q Consensus 330 v~~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~ 407 (768)
...+.|..++. ++-+.+.-| .|+.+|+.++..... ......----.++.. ++++....-.++...+|
T Consensus 47 TQGL~~~~~g~-LyESTG~yG~S~l~~~d~~tg~~~~~---------~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~y 115 (264)
T PF05096_consen 47 TQGLEFLDDGT-LYESTGLYGQSSLRKVDLETGKVLQS---------VPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVY 115 (264)
T ss_dssp EEEEEEEETTE-EEEEECSTTEEEEEEEETTTSSEEEE---------EE-TTT--EEEEEEE-TTEEEEEESSSSEEEEE
T ss_pred CccEEecCCCE-EEEeCCCCCcEEEEEEECCCCcEEEE---------EECCccccceeEEEE-CCEEEEEEecCCeEEEE
Confidence 45677766644 667777666 688888876531111 111111111233333 34455555678999999
Q ss_pred eCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCC-----CcEEEEEEEeCCCEEEEE
Q 004214 408 RLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHT-----SSVLRASFLTRGAQIVSC 482 (768)
Q Consensus 408 d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~-----~~v~~~~~s~~~~~l~s~ 482 (768)
|..+.+.+.++.- ...=+.++ .+++.|+.+.....++++|..+.+..+++.-.. ..++-+-|. +|...|=.
T Consensus 116 d~~tl~~~~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANV 191 (264)
T PF05096_consen 116 DPNTLKKIGTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANV 191 (264)
T ss_dssp ETTTTEEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEE
T ss_pred ccccceEEEEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEe
Confidence 9999999988863 45667777 557778887778899999999988887776322 234556664 66666656
Q ss_pred eCCCcEEEEECCCCeEEEEecc------------C---CCcEEEEEEcCCCCEEEEEe
Q 004214 483 GADGLVKLWTVRTGECIATYDK------------H---EDKIWALAVGKKTEMFATGG 525 (768)
Q Consensus 483 ~~dg~i~iwd~~~~~~~~~~~~------------~---~~~v~~l~~s~~~~~l~s~~ 525 (768)
-....|...|..+|+++..++. + .+-.+.+|+.|....|...|
T Consensus 192 W~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 192 WQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp TTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred CCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 5667788889999999887631 1 24478999998766655544
No 405
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.16 E-value=0.65 Score=44.48 Aligned_cols=171 Identities=15% Similarity=0.186 Sum_probs=105.3
Q ss_pred EEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecC-ccceeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 004214 26 FKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDK-HFSRVTSMAITSDGSTLISAGRDKVVNLWDLR 104 (768)
Q Consensus 26 l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~-h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~ 104 (768)
+.|-...|+++.|+|+.+. |++-...+.-.||=...|+.+.++.- .-+..-.|.+..+|++.++--+++.+.+..+.
T Consensus 81 i~g~~~nvS~LTynp~~rt--LFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd 158 (316)
T COG3204 81 ILGETANVSSLTYNPDTRT--LFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVD 158 (316)
T ss_pred cccccccccceeeCCCcce--EEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEc
Confidence 3455666999999999887 77777888888888889999988752 12235567888889888888889999888876
Q ss_pred CCeeeeeeec-----------ceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCce-e
Q 004214 105 DYSCKLTVPT-----------YEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSAC-L 172 (768)
Q Consensus 105 ~~~~~~~~~~-----------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~-~ 172 (768)
.......+.. ....+.+++.|... .|+.+-+..-+.++....+. .
T Consensus 159 ~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~-----------------------~l~~aKEr~P~~I~~~~~~~~~ 215 (316)
T COG3204 159 ADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDH-----------------------RLFVAKERNPIGIFEVTQSPSS 215 (316)
T ss_pred CCccEEeccceEEeccccCCCCcCceeeecCCCCc-----------------------eEEEEEccCCcEEEEEecCCcc
Confidence 6543322211 23356666666654 56666666666666655331 1
Q ss_pred eeecCCceeecccccCcccceeEEEEccCCCceEEEEe-cCeEEEEeeccC
Q 004214 173 YEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTA-DQQLLLYTTVEV 222 (768)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~~~~~~~~ 222 (768)
..... ........+-....+..+.+.+..+.+++.+. ++.+...+....
T Consensus 216 l~~~~-~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 216 LSVHA-SLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred ccccc-ccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCC
Confidence 00000 00000111111245566777777777766664 455555555544
No 406
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.99 E-value=0.82 Score=46.74 Aligned_cols=193 Identities=11% Similarity=0.117 Sum_probs=94.4
Q ss_pred CcEEEEEe-CCCeEEEEeCCCCCCCCccccccceeeEeec---cC----CCeEEEEEccCCCEEEEEeC--C----CcEE
Q 004214 340 QNFLVSGS-SDHTIKVWSFDGLSDDAEQPMNLKAKAVVAA---HG----KDINSLAVAPNDSLVCTGSQ--D----RTAC 405 (768)
Q Consensus 340 ~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~---~~----~~i~~~~~s~~~~~l~~~~~--d----g~i~ 405 (768)
+++|+..+ ..+.|.+.|+......+. ...+... +. .....+-.-|+|++++++-. + |-+.
T Consensus 87 Rr~Li~PgL~SsrIyviD~~~dPr~P~------l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~ 160 (461)
T PF05694_consen 87 RRYLILPGLRSSRIYVIDTKTDPRKPR------LHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFV 160 (461)
T ss_dssp S-EEEEEBTTT--EEEEE--S-TTS-E------EEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEE
T ss_pred CCcEEeeeeccCcEEEEECCCCCCCCc------eEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEE
Confidence 44666665 778899999875432221 1111111 10 11223444578888877532 2 4588
Q ss_pred EEeCCCCceEEEEeccCC---CeEEEEEccCCCEEEEeeC--------------------CCcEEEEeCCCCceeEEeec
Q 004214 406 VWRLPDLVSVVTFRGHKR---GIWSVEFSPVDQVVITASG--------------------DKTIKIWSISDGSCLKTFEG 462 (768)
Q Consensus 406 i~d~~~~~~~~~~~~~~~---~v~~v~~s~~~~~l~t~~~--------------------d~~i~iwd~~~~~~~~~~~~ 462 (768)
++|-++.+.......... --..+-|.|..+.++|+.. -.++.+||+.+.+.++++.-
T Consensus 161 llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idL 240 (461)
T PF05694_consen 161 LLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDL 240 (461)
T ss_dssp EE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES
T ss_pred EEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEec
Confidence 888888877776654322 3456778888888887642 35799999999999999874
Q ss_pred CC--CcEEEEEEEeC--CCEEEEEe-CCCcEEEE-ECCCCe----EEEEeccC-----------------CCcEEEEEEc
Q 004214 463 HT--SSVLRASFLTR--GAQIVSCG-ADGLVKLW-TVRTGE----CIATYDKH-----------------EDKIWALAVG 515 (768)
Q Consensus 463 ~~--~~v~~~~~s~~--~~~l~s~~-~dg~i~iw-d~~~~~----~~~~~~~~-----------------~~~v~~l~~s 515 (768)
-. .....+.|..+ ..+=++++ -.++|..| ....++ .+..+... ..-|+.+.+|
T Consensus 241 g~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iS 320 (461)
T PF05694_consen 241 GEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILIS 320 (461)
T ss_dssp -TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-
T ss_pred CCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEc
Confidence 33 24567777654 44433333 33444444 334443 22233211 2447899999
Q ss_pred CCCCEEEEEe-CCCcEEEEEcCCH
Q 004214 516 KKTEMFATGG-SDALVNLWHDSTA 538 (768)
Q Consensus 516 ~~~~~l~s~~-~dg~v~vw~~~~~ 538 (768)
.|.++|.... .+|.|+.||+..+
T Consensus 321 lDDrfLYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 321 LDDRFLYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp TTS-EEEEEETTTTEEEEEE-SST
T ss_pred cCCCEEEEEcccCCcEEEEecCCC
Confidence 9999987665 7999999999874
No 407
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=95.81 E-value=0.0071 Score=65.37 Aligned_cols=188 Identities=18% Similarity=0.271 Sum_probs=109.8
Q ss_pred CCeEEEEeCCCceE-EEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeE
Q 004214 306 DNSVRLWDSESRCC-VGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDIN 384 (768)
Q Consensus 306 dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 384 (768)
.+.+++-+..+... -...++..+.+..+.|.......+. -.-|.+.+|+++....... .............++.
T Consensus 110 ~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq---~~l~v~~~~p~gs~~~ 184 (1283)
T KOG1916|consen 110 ENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQ---PQLEVTPITPYGSDPQ 184 (1283)
T ss_pred hhhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccc---cceEEeecCcCCCCcc
Confidence 34566655443221 1234556677777777432211122 2336788999875321111 1112222233344555
Q ss_pred EEEEcc---CCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEE-----------EEccCCCEEEEeeCCCcEEEEe
Q 004214 385 SLAVAP---NDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSV-----------EFSPVDQVVITASGDKTIKIWS 450 (768)
Q Consensus 385 ~~~~s~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v-----------~~s~~~~~l~t~~~d~~i~iwd 450 (768)
-+.|.| +.-++..+..++++++........ ..+.+|...++.+ ..||||..++.++.||.++.|.
T Consensus 185 ~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Q 263 (1283)
T KOG1916|consen 185 LVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQ 263 (1283)
T ss_pred eeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceee
Confidence 566665 667888888899998887655432 2344576655543 3689999999999999988887
Q ss_pred CC-----CCceeEEeecCCC-cEEEEEEEeCC---------CEEEEEeC-CCcEEEEECCCCeEE
Q 004214 451 IS-----DGSCLKTFEGHTS-SVLRASFLTRG---------AQIVSCGA-DGLVKLWTVRTGECI 499 (768)
Q Consensus 451 ~~-----~~~~~~~~~~~~~-~v~~~~~s~~~---------~~l~s~~~-dg~i~iwd~~~~~~~ 499 (768)
+. .-.|+...+.|++ +-.|..|..+. .++++++. +..+++|.....+|+
T Consensus 264 iyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 264 IYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred eeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 53 3457777888874 33333333221 13455554 457999988877776
No 408
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.78 E-value=0.11 Score=58.24 Aligned_cols=144 Identities=11% Similarity=0.080 Sum_probs=93.7
Q ss_pred CCCeEEEEEccCCCEEEEEe--CCCcEEEEeCCCCceEE-----EEecc------CCCeEEEEEccCC-CEEEEeeCCCc
Q 004214 380 GKDINSLAVAPNDSLVCTGS--QDRTACVWRLPDLVSVV-----TFRGH------KRGIWSVEFSPVD-QVVITASGDKT 445 (768)
Q Consensus 380 ~~~i~~~~~s~~~~~l~~~~--~dg~i~i~d~~~~~~~~-----~~~~~------~~~v~~v~~s~~~-~~l~t~~~d~~ 445 (768)
..++..+...+|+...++.. .+-.|..||+++..... -+..| ..-..++.|.|.- -..++...|+.
T Consensus 100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls 179 (1405)
T KOG3630|consen 100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS 179 (1405)
T ss_pred cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence 34566777777866555443 33378999987542211 11112 2234677888853 33556677899
Q ss_pred EEEEeCCCCce-eEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEecc----CCCcEEEEEEcCCCCE
Q 004214 446 IKIWSISDGSC-LKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDK----HEDKIWALAVGKKTEM 520 (768)
Q Consensus 446 i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----~~~~v~~l~~s~~~~~ 520 (768)
|++..+..... +.++ ......++++|+|.|++++.|-..|++.-|.. +++....+.. ....|.+++|-....+
T Consensus 180 l~V~~~~~~~~~v~s~-p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~Wl~t~ef 257 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSF-PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVTWLSTQEF 257 (1405)
T ss_pred hhhhhhhhhhhhhccc-CcccceeeEEeccccceeeEecCCCeEEEeec-ccceeecccCCCcCCCcceeEEEEecceeE
Confidence 98887754332 2222 25667899999999999999999999998864 4444444432 2467999999887777
Q ss_pred EEEEe
Q 004214 521 FATGG 525 (768)
Q Consensus 521 l~s~~ 525 (768)
+++-+
T Consensus 258 lvvy~ 262 (1405)
T KOG3630|consen 258 LVVYG 262 (1405)
T ss_pred EEEec
Confidence 76543
No 409
>PHA03098 kelch-like protein; Provisional
Probab=95.74 E-value=0.74 Score=50.95 Aligned_cols=185 Identities=11% Similarity=0.119 Sum_probs=86.4
Q ss_pred CEEEEEEeCCC------eEEEEeCCCceEEEeeecc--cCcEEEEEEecCCCcEEEEEeCC-----CeEEEEeCCCCCCC
Q 004214 297 KILIVTGSKDN------SVRLWDSESRCCVGVGTGH--MGAVGAVAFSKKLQNFLVSGSSD-----HTIKVWSFDGLSDD 363 (768)
Q Consensus 297 ~~~l~~~~~dg------~i~iwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~ 363 (768)
+.+++.|+.++ .+..||..+++........ ......+. -+ ..+++.||.+ ..+..||.....-.
T Consensus 295 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~~-~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 295 NVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--FN-NRIYVIGGIYNSISLNTVESWKPGESKWR 371 (534)
T ss_pred CEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--EC-CEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence 34466666442 5778888877654332211 11112222 23 3467777765 34666776543211
Q ss_pred CccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCC------CcEEEEeCCCCceEE--EEeccCCCeEEEEEccCCC
Q 004214 364 AEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQD------RTACVWRLPDLVSVV--TFRGHKRGIWSVEFSPVDQ 435 (768)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d------g~i~i~d~~~~~~~~--~~~~~~~~v~~v~~s~~~~ 435 (768)
...+. . +...-.++ ..-++++.+.|+.+ ..+..||+.+.+-.. .+...... .++ ...++.
T Consensus 372 ~~~~l--------p-~~r~~~~~-~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~-~~~-~~~~~~ 439 (534)
T PHA03098 372 EEPPL--------I-FPRYNPCV-VNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYG-GCA-IYHDGK 439 (534)
T ss_pred eCCCc--------C-cCCccceE-EEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccC-ceE-EEECCE
Confidence 10000 0 00101111 22367777777742 357888887643221 11111111 122 223466
Q ss_pred EEEEeeCC--------CcEEEEeCCCCcee--EEeecCCCcEEEEEEEeCCCEEEEEeCC-----CcEEEEECCCCeE
Q 004214 436 VVITASGD--------KTIKIWSISDGSCL--KTFEGHTSSVLRASFLTRGAQIVSCGAD-----GLVKLWTVRTGEC 498 (768)
Q Consensus 436 ~l~t~~~d--------~~i~iwd~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~s~~~d-----g~i~iwd~~~~~~ 498 (768)
+.+.|+.+ ..+.+||..+++-. ..+....... ++ ..-+++.++.||.+ ..+.+||+.+.+-
T Consensus 440 iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~-~~-~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 515 (534)
T PHA03098 440 IYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINA-SL-CIFNNKIYVVGGDKYEYYINEIEVYDDKTNTW 515 (534)
T ss_pred EEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccc-eE-EEECCEEEEEcCCcCCcccceeEEEeCCCCEE
Confidence 66777643 23888898765422 2111111111 11 12366666777654 3678888776643
No 410
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.73 E-value=0.033 Score=37.24 Aligned_cols=34 Identities=6% Similarity=0.233 Sum_probs=30.0
Q ss_pred CCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCce
Q 004214 422 KRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSC 456 (768)
Q Consensus 422 ~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~ 456 (768)
...|.+++|+|...+||.+..+|.|.+|.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 456999999999999999999999999998 5544
No 411
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=95.66 E-value=2.1 Score=40.94 Aligned_cols=270 Identities=13% Similarity=0.083 Sum_probs=148.4
Q ss_pred eeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCC---ce
Q 004214 242 ILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES---RC 318 (768)
Q Consensus 242 i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~---~~ 318 (768)
+.++.+ .+++..++..+.-++++|+.+......+..-.- ...+.++.-.|+. ...+..|.-+-+.|+.+ ..
T Consensus 89 ~~Dv~v---se~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt--~gyaygv~vsGn~-aYVadlddgfLivdvsdpssP~ 162 (370)
T COG5276 89 FADVRV---SEEYVYVADWSSGLRIVDISTPDSPTLIGFLNT--DGYAYGVYVSGNY-AYVADLDDGFLIVDVSDPSSPQ 162 (370)
T ss_pred hheeEe---cccEEEEEcCCCceEEEeccCCCCcceeccccC--CceEEEEEecCCE-EEEeeccCcEEEEECCCCCCce
Confidence 344444 456888888889999999987765543322111 0222334455666 55555454555667654 34
Q ss_pred EEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEE
Q 004214 319 CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTG 398 (768)
Q Consensus 319 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 398 (768)
....+.........++++-+ +...+..|+-+.+-|+..... ............+.++..+++.-+++..
T Consensus 163 lagrya~~~~d~~~v~ISGn---~AYvA~~d~GL~ivDVSnp~s--------Pvli~~~n~g~g~~sv~vsdnr~y~vvy 231 (370)
T COG5276 163 LAGRYALPGGDTHDVAISGN---YAYVAWRDGGLTIVDVSNPHS--------PVLIGSYNTGPGTYSVSVSDNRAYLVVY 231 (370)
T ss_pred eeeeeccCCCCceeEEEecC---eEEEEEeCCCeEEEEccCCCC--------CeEEEEEecCCceEEEEecCCeeEEEEc
Confidence 44455555555567777754 577778899999999985421 0111111223367778888776666654
Q ss_pred eCCCcEEEEeCCCCceEEEEec--cCCC--eEEEEEccCCCEEEEeeCCCcEEEEeCCCCce---eEEeecCCCcEEEEE
Q 004214 399 SQDRTACVWRLPDLVSVVTFRG--HKRG--IWSVEFSPVDQVVITASGDKTIKIWSISDGSC---LKTFEGHTSSVLRAS 471 (768)
Q Consensus 399 ~~dg~i~i~d~~~~~~~~~~~~--~~~~--v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~---~~~~~~~~~~v~~~~ 471 (768)
. --+.+-|..+.+....+.. ...+ ++.+..+ +++...+..+.-+.+-|+.+..- ...+......-..+.
T Consensus 232 ~--egvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs--~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~ 307 (370)
T COG5276 232 D--EGVLIVDVSGPSSPTVFGSYETSNPVSISTVPVS--GEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIR 307 (370)
T ss_pred c--cceEEEecCCCCCceEeeccccCCcccccceecc--cceeeeeccccCceeEeccCCCCCchhccccCCCccccceE
Confidence 3 3477777776654433322 2222 2223333 77777777777777777764321 111111111111122
Q ss_pred EEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 004214 472 FLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHD 535 (768)
Q Consensus 472 ~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~ 535 (768)
..+.++..+..+ +..+-+....+......+....+.+.+.+-+.+.+.+...++-+.+|+.
T Consensus 308 --ay~~y~yiadkn-~g~vV~~s~~s~m~~~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~~ 368 (370)
T COG5276 308 --AYGNYNYIADKN-TGAVVDASPPSMMDKRPGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIEY 368 (370)
T ss_pred --EecCeeEeccCC-ceEEEeCCChhhcccccCcceEeeecceEEEeeEEEEeecCCCEEEEEe
Confidence 224455444443 3444444443333333333333444555556667888888999999975
No 412
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.60 E-value=0.045 Score=36.60 Aligned_cols=34 Identities=21% Similarity=0.227 Sum_probs=29.9
Q ss_pred cceeEEEEEcCCCCEEEEEeCCCeEEEEECCCCee
Q 004214 74 FSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSC 108 (768)
Q Consensus 74 ~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~~~~~ 108 (768)
...|.+++|+|....||.+..+|.|.++.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 456999999999999999999999999998 5543
No 413
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.56 E-value=2.8 Score=41.61 Aligned_cols=152 Identities=15% Similarity=0.189 Sum_probs=81.0
Q ss_pred ccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeC-CCCce
Q 004214 378 AHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSI-SDGSC 456 (768)
Q Consensus 378 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~-~~~~~ 456 (768)
.....+..+..+++|++++++.......-||.-...-...-+.....|.+|.|.|++.+.+.+ ..|.|+.=+. ...+.
T Consensus 142 ~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~ 220 (302)
T PF14870_consen 142 ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGET 220 (302)
T ss_dssp S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEE
T ss_pred CCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccc
Confidence 344678888999999999998766666677754322222233356789999999998877766 6688887762 22221
Q ss_pred eEE----eecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEec---cCCCcEEEEEEcCCCCEEEEEeCCCc
Q 004214 457 LKT----FEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD---KHEDKIWALAVGKKTEMFATGGSDAL 529 (768)
Q Consensus 457 ~~~----~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~l~~s~~~~~l~s~~~dg~ 529 (768)
-.. +....-.+..++|.+++...++|+. |.+ +...+.|+.-.... .-...+..+.|.++.+ -.+.+.+|.
T Consensus 221 w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~-gf~lG~~G~ 297 (302)
T PF14870_consen 221 WSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDK-GFVLGQDGV 297 (302)
T ss_dssp E---B-TTSS--S-EEEEEESSSS-EEEEEST-T-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTE-EEEE-STTE
T ss_pred cccccCCcccCceeeEEEEecCCCCEEEEeCC-ccE-EEeCCCCccceECccccCCCCceEEEEEcCCCc-eEEECCCcE
Confidence 111 1112334789999988777776654 533 34556666554443 2345678888875544 445567887
Q ss_pred EEEE
Q 004214 530 VNLW 533 (768)
Q Consensus 530 v~vw 533 (768)
|.-|
T Consensus 298 ll~~ 301 (302)
T PF14870_consen 298 LLRY 301 (302)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 7655
No 414
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=95.46 E-value=6.1 Score=44.87 Aligned_cols=132 Identities=11% Similarity=0.134 Sum_probs=77.5
Q ss_pred CCcEEEEeCC-CCceEEEEec--cCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecC--CCcEEEEEEEeC
Q 004214 401 DRTACVWRLP-DLVSVVTFRG--HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGH--TSSVLRASFLTR 475 (768)
Q Consensus 401 dg~i~i~d~~-~~~~~~~~~~--~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~--~~~v~~~~~s~~ 475 (768)
+|.++.|++- .++.+.-+.. -.++| .+..|...++++|-+ ..+++||+...++++..+.. ...|+.+++ .
T Consensus 911 ~g~~ytyk~~~~g~~lellh~T~~~~~v--~Ai~~f~~~~LagvG-~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~ 985 (1205)
T KOG1898|consen 911 SGFVYTYKFVRNGDKLELLHKTEIPGPV--GAICPFQGRVLAGVG-RFLRLYDLGKKKLLRKCELKFIPNRISSIQT--Y 985 (1205)
T ss_pred CCceEEEEEEecCceeeeeeccCCCccc--eEEeccCCEEEEecc-cEEEEeeCChHHHHhhhhhccCceEEEEEee--c
Confidence 4557777653 3332222221 12233 455676667776655 78999999888877765532 345666655 4
Q ss_pred CCEEEEEeCCCcEEE--EECCCCeEEEEecc-CCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCH
Q 004214 476 GAQIVSCGADGLVKL--WTVRTGECIATYDK-HEDKIWALAVGKKTEMFATGGSDALVNLWHDSTA 538 (768)
Q Consensus 476 ~~~l~s~~~dg~i~i--wd~~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~ 538 (768)
+..+++|..--.|.+ |+...++.+.-... -+..|+++.+- |...+|.+..=|.+.+-++...
T Consensus 986 ~~RI~VgD~qeSV~~~~y~~~~n~l~~fadD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P~d 1050 (1205)
T KOG1898|consen 986 GARIVVGDIQESVHFVRYRREDNQLIVFADDPVPRHVTALELL-DYDTVAGADRFGNIAVVRIPPD 1050 (1205)
T ss_pred ceEEEEeeccceEEEEEEecCCCeEEEEeCCCccceeeEEEEe-cCCceeeccccCcEEEEECCCc
Confidence 668888877555544 55444444433322 22345555544 5556788888888888777654
No 415
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=95.43 E-value=0.01 Score=64.26 Aligned_cols=214 Identities=18% Similarity=0.208 Sum_probs=116.3
Q ss_pred eecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECC--Cceee-----eeeeCCccceEEEeeeeecCCCEEEEEEeCC
Q 004214 234 RLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLS--SMSCS-----YVLAGHSEIVLCLDTCALSSGKILIVTGSKD 306 (768)
Q Consensus 234 ~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~--~~~~~-----~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~d 306 (768)
...|+.+.+.++.|-+.+...+. ..-|.+.+|++. .|+.. .........+.-+.||.+.....++..+-++
T Consensus 127 l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~ 204 (1283)
T KOG1916|consen 127 LAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKG 204 (1283)
T ss_pred HHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCC
Confidence 35677888888888665555444 444778888865 33322 2223344455666677776666668888888
Q ss_pred CeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEE
Q 004214 307 NSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSL 386 (768)
Q Consensus 307 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 386 (768)
+.|++.+...... ..+.+|...+..++|...|-..+..
T Consensus 205 ~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~----------------------------------------- 242 (1283)
T KOG1916|consen 205 GEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLAS----------------------------------------- 242 (1283)
T ss_pred CceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhhee-----------------------------------------
Confidence 9998887765433 3445577776666655443211111
Q ss_pred EEccCCCEEEEEeCCCcEEEEeCC-----CCceEEEEeccC-CCeEEEEEccC---------CCEEEEe-eCCCcEEEEe
Q 004214 387 AVAPNDSLVCTGSQDRTACVWRLP-----DLVSVVTFRGHK-RGIWSVEFSPV---------DQVVITA-SGDKTIKIWS 450 (768)
Q Consensus 387 ~~s~~~~~l~~~~~dg~i~i~d~~-----~~~~~~~~~~~~-~~v~~v~~s~~---------~~~l~t~-~~d~~i~iwd 450 (768)
+||||..++.++.||.+++|.+. ...+....+.|. .+-.|.-|+.+ -.+++++ ..+..+++|.
T Consensus 243 -lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~ 321 (1283)
T KOG1916|consen 243 -LSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWA 321 (1283)
T ss_pred -eCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEee
Confidence 45666666666666666555431 222333333444 22222222221 1234443 4466799999
Q ss_pred CCCCceeEEee--------cCCCcEEEEEEEeC-CCEEEEEeCCCcEEEEE
Q 004214 451 ISDGSCLKTFE--------GHTSSVLRASFLTR-GAQIVSCGADGLVKLWT 492 (768)
Q Consensus 451 ~~~~~~~~~~~--------~~~~~v~~~~~s~~-~~~l~s~~~dg~i~iwd 492 (768)
....+|+-.+. .|.+.|+.+....- -..+++.+-+|.|.+|-
T Consensus 322 ~a~w~Cll~~~~d~v~iV~p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~q 372 (1283)
T KOG1916|consen 322 EAPWQCLLDKLIDGVQIVGPHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQ 372 (1283)
T ss_pred ccchhhhhhhcccceEeecCCCccccchhhhHHHHHHHHHhhhHHHHHHhh
Confidence 88888772221 22223322111100 01234556678888884
No 416
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.33 E-value=0.63 Score=48.43 Aligned_cols=145 Identities=12% Similarity=0.089 Sum_probs=83.3
Q ss_pred CCeEEEEEccCCCEEEEEe-----------CCC-cEEEEeCCC--Cc--eEEEEeccCCCeEEEEEccCCCEEEEeeCCC
Q 004214 381 KDINSLAVAPNDSLVCTGS-----------QDR-TACVWRLPD--LV--SVVTFRGHKRGIWSVEFSPVDQVVITASGDK 444 (768)
Q Consensus 381 ~~i~~~~~s~~~~~l~~~~-----------~dg-~i~i~d~~~--~~--~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~ 444 (768)
.....|+|.++|+++++-. ..+ .|.+++-.+ ++ ....+.......+.+++.+++ +++ ++...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCe
Confidence 3467899999999887753 223 677776543 32 223444334456889999988 444 44443
Q ss_pred cEEEEeCCC-C----c--ee-EEeec----CCCcEEEEEEEeCCCEEEEEeCC-------------------CcEEEEEC
Q 004214 445 TIKIWSISD-G----S--CL-KTFEG----HTSSVLRASFLTRGAQIVSCGAD-------------------GLVKLWTV 493 (768)
Q Consensus 445 ~i~iwd~~~-~----~--~~-~~~~~----~~~~v~~~~~s~~~~~l~s~~~d-------------------g~i~iwd~ 493 (768)
..++.|... + + .+ ..+.. +......+.|.|||.+.++-+.. |.|.-++.
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p 171 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP 171 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence 333435421 1 1 11 22322 23457789999999866654421 34555565
Q ss_pred CCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCC
Q 004214 494 RTGECIATYDKHEDKIWALAVGKKTEMFATGGSDA 528 (768)
Q Consensus 494 ~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg 528 (768)
.+++.. .+.......+.++|+|+|+.+++-..++
T Consensus 172 dg~~~e-~~a~G~rnp~Gl~~d~~G~l~~tdn~~~ 205 (367)
T TIGR02604 172 DGGKLR-VVAHGFQNPYGHSVDSWGDVFFCDNDDP 205 (367)
T ss_pred CCCeEE-EEecCcCCCccceECCCCCEEEEccCCC
Confidence 554432 2222223456899999999887755443
No 417
>PHA03098 kelch-like protein; Provisional
Probab=95.13 E-value=0.76 Score=50.86 Aligned_cols=142 Identities=12% Similarity=0.129 Sum_probs=70.9
Q ss_pred CCCEEEEEeCCC-----cEEEEeCCCCceEE--EEeccCCCeEEEEEccCCCEEEEeeCC------CcEEEEeCCCCcee
Q 004214 391 NDSLVCTGSQDR-----TACVWRLPDLVSVV--TFRGHKRGIWSVEFSPVDQVVITASGD------KTIKIWSISDGSCL 457 (768)
Q Consensus 391 ~~~~l~~~~~dg-----~i~i~d~~~~~~~~--~~~~~~~~v~~v~~s~~~~~l~t~~~d------~~i~iwd~~~~~~~ 457 (768)
++++++.|+.++ .+..||..+.+-.. .+...... .+++ .-++++.+.|+.+ ..+..||..+++-.
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~-~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~ 419 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYN-PCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWS 419 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCcc-ceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeee
Confidence 677888888653 47778876653211 11111111 1222 2346777777632 45888998765321
Q ss_pred --EEeecCCCcEEEEEEEeCCCEEEEEeCCC--------cEEEEECCCCeEEEE--eccCCCcEEEEEEcCCCCEEEEEe
Q 004214 458 --KTFEGHTSSVLRASFLTRGAQIVSCGADG--------LVKLWTVRTGECIAT--YDKHEDKIWALAVGKKTEMFATGG 525 (768)
Q Consensus 458 --~~~~~~~~~v~~~~~s~~~~~l~s~~~dg--------~i~iwd~~~~~~~~~--~~~~~~~v~~l~~s~~~~~l~s~~ 525 (768)
..+...... ..+...++...+.||.++ .+.+||..+++.... +..+......+.+ ++..++.||
T Consensus 420 ~~~~~p~~r~~--~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG 495 (534)
T PHA03098 420 KGSPLPISHYG--GCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGG 495 (534)
T ss_pred ecCCCCccccC--ceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcC
Confidence 111111111 112234566666666432 388899887654332 1111111112222 677777777
Q ss_pred CC-----CcEEEEEcCCH
Q 004214 526 SD-----ALVNLWHDSTA 538 (768)
Q Consensus 526 ~d-----g~v~vw~~~~~ 538 (768)
.+ ..+.+||..+.
T Consensus 496 ~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 496 DKYEYYINEIEVYDDKTN 513 (534)
T ss_pred CcCCcccceeEEEeCCCC
Confidence 54 35777776654
No 418
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.13 E-value=0.74 Score=50.19 Aligned_cols=111 Identities=11% Similarity=0.212 Sum_probs=74.5
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEe-ccCCCeEEEEEc--cCCCEEEEeeCCCcEEEEeCC-----
Q 004214 381 KDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFR-GHKRGIWSVEFS--PVDQVVITASGDKTIKIWSIS----- 452 (768)
Q Consensus 381 ~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~v~~s--~~~~~l~t~~~d~~i~iwd~~----- 452 (768)
..+.-+.-+.-++..++.+....+.|||...+.....-. .....|.+++|. |+++.+++.|-.+.|.+|.-.
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~ 109 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT 109 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence 344455555555555555555689999998876443322 346789999886 578888888888999998642
Q ss_pred ----CCceeEEee--cCC-CcEEEEEEEeCCCEEEEEeCCCcEEEEEC
Q 004214 453 ----DGSCLKTFE--GHT-SSVLRASFLTRGAQIVSCGADGLVKLWTV 493 (768)
Q Consensus 453 ----~~~~~~~~~--~~~-~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 493 (768)
+..+++.+. .|+ .+|.+..|.++|..++.+| ..+.|+|-
T Consensus 110 ~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 110 NKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred cCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 123444432 344 6899999999997766554 46777763
No 419
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.09 E-value=3.3 Score=39.71 Aligned_cols=95 Identities=12% Similarity=0.127 Sum_probs=56.5
Q ss_pred CCCEEEEEeCCCcEEEEECCCceeeeeeeC--CccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeec---
Q 004214 251 EEQYLAVATNIEQVQVYDLSSMSCSYVLAG--HSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTG--- 325 (768)
Q Consensus 251 ~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~--~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--- 325 (768)
++..|+....+..++.+|..+.+....+.- ...++..+.-.-.-+ +.+.|=.-....|...|..+|+....+..
T Consensus 138 dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~-G~IyANVW~td~I~~Idp~tG~V~~~iDls~L 216 (264)
T PF05096_consen 138 DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYIN-GKIYANVWQTDRIVRIDPETGKVVGWIDLSGL 216 (264)
T ss_dssp CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEET-TEEEEEETTSSEEEEEETTT-BEEEEEE-HHH
T ss_pred CCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEEc-CEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHh
Confidence 556777777778899999888776665532 223333222112223 33355455566788889999988876531
Q ss_pred ------------ccCcEEEEEEecCCCcEEEEE
Q 004214 326 ------------HMGAVGAVAFSKKLQNFLVSG 346 (768)
Q Consensus 326 ------------~~~~v~~~~~~~~~~~~l~s~ 346 (768)
.......+++.|....+++||
T Consensus 217 ~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 217 RPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp HHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred hhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 135689999999988888887
No 420
>PHA02790 Kelch-like protein; Provisional
Probab=94.83 E-value=2.3 Score=46.08 Aligned_cols=183 Identities=8% Similarity=0.062 Sum_probs=83.5
Q ss_pred CCEEEEEEeCCC-----eEEEEeCCCceEEEeeecccCcE-EEEEEecCCCcEEEEEeCC--CeEEEEeCCCCCCCCccc
Q 004214 296 GKILIVTGSKDN-----SVRLWDSESRCCVGVGTGHMGAV-GAVAFSKKLQNFLVSGSSD--HTIKVWSFDGLSDDAEQP 367 (768)
Q Consensus 296 ~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~ 367 (768)
++.++++|+.++ .+..||..++............. .+++ .-+ +.+.+.|+.+ .++..||.....
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v-~~~-~~iYviGG~~~~~sve~ydp~~n~------ 342 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV-PAN-NKLYVVGGLPNPTSVERWFHGDAA------ 342 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE-EEC-CEEEEECCcCCCCceEEEECCCCe------
Confidence 344567776543 57778888776544322221111 1122 223 3366777653 356777754321
Q ss_pred cccceeeEeeccCCCeEEEEEccCCCEEEEEeCCC---cEEEEeCCCCceEE--EEeccCCCeEEEEEccCCCEEEEeeC
Q 004214 368 MNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDR---TACVWRLPDLVSVV--TFRGHKRGIWSVEFSPVDQVVITASG 442 (768)
Q Consensus 368 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg---~i~i~d~~~~~~~~--~~~~~~~~v~~v~~s~~~~~l~t~~~ 442 (768)
........ ... ....+..-+|++.+.|+.++ .+..||..+.+-.. .+....... ++ ..-++.+.+.|
T Consensus 343 --W~~~~~l~-~~r-~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~-~~-~~~~~~IYv~G-- 414 (480)
T PHA02790 343 --WVNMPSLL-KPR-CNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKS-CA-LVFGRRLFLVG-- 414 (480)
T ss_pred --EEECCCCC-CCC-cccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccc-eE-EEECCEEEEEC--
Confidence 11110000 000 01112233678888887654 46778876543211 111111111 22 22346666666
Q ss_pred CCcEEEEeCCCCce--eEEeecCCCcEEEEEEEeCCCEEEEEeCC-----CcEEEEECCCCe
Q 004214 443 DKTIKIWSISDGSC--LKTFEGHTSSVLRASFLTRGAQIVSCGAD-----GLVKLWTVRTGE 497 (768)
Q Consensus 443 d~~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~s~~~d-----g~i~iwd~~~~~ 497 (768)
|.+.+||..+++= +..+....... ++ ..-+|+..+.||.+ ..+..||..+++
T Consensus 415 -G~~e~ydp~~~~W~~~~~m~~~r~~~-~~-~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 415 -RNAEFYCESSNTWTLIDDPIYPRDNP-EL-IIVDNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred -CceEEecCCCCcEeEcCCCCCCcccc-EE-EEECCEEEEECCcCCCcccceEEEEECCCCe
Confidence 3577888866532 22221111111 12 23466677777654 235566655443
No 421
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=94.79 E-value=1.6 Score=46.04 Aligned_cols=159 Identities=12% Similarity=0.139 Sum_probs=89.0
Q ss_pred ccceEEEeeeeecCCCEEEEEEe--CCCeEEEEeCCCceEEEeeecccCcEEEEEEecCC---CcEEEEEeCCCeEEEEe
Q 004214 282 SEIVLCLDTCALSSGKILIVTGS--KDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKL---QNFLVSGSSDHTIKVWS 356 (768)
Q Consensus 282 ~~~v~~l~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~s~~~dg~i~iwd 356 (768)
-.++..+ +|.+|+.++.+.- .+|.+++=| ...+ +.-..|..++|.|-+ ..-+++.-....|.+|.
T Consensus 19 iHPvhGl---aWTDGkqVvLT~L~l~~gE~kfGd---s~vi----GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWq 88 (671)
T PF15390_consen 19 IHPVHGL---AWTDGKQVVLTDLQLHNGEPKFGD---SKVI----GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQ 88 (671)
T ss_pred hccccce---EecCCCEEEEEeeeeeCCccccCC---ccEe----eccceeeeeeecCcccCCCCceEEEeccceEEEEE
Confidence 3456666 5677777566542 233332211 1222 334568889998853 12355566678899999
Q ss_pred CCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC--ceEEEEeccCCCeEEEEEccCC
Q 004214 357 FDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDL--VSVVTFRGHKRGIWSVEFSPVD 434 (768)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~v~~v~~s~~~ 434 (768)
+.......................--...+.|+|....|++-+....-.++++... +....+ ...+-|.|.+|.+||
T Consensus 89 L~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG 167 (671)
T PF15390_consen 89 LCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI-KTSGLIHCACWTKDG 167 (671)
T ss_pred eccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEec-cCCceEEEEEecCcC
Confidence 87432221111000000000111112345789999888888776655555665432 233334 356789999999999
Q ss_pred CEEEEeeCC-CcEEEEeC
Q 004214 435 QVVITASGD-KTIKIWSI 451 (768)
Q Consensus 435 ~~l~t~~~d-~~i~iwd~ 451 (768)
+.|+++-+. =.-+|||-
T Consensus 168 ~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 168 QRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred CEEEEEeCCeEEEEEecC
Confidence 988776543 34568874
No 422
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=94.44 E-value=4.1 Score=37.69 Aligned_cols=101 Identities=10% Similarity=0.103 Sum_probs=69.9
Q ss_pred EEEEEEecCCCcEEEEEeCCCeEEEEeCC--CCCCCCcc-ccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEE
Q 004214 330 VGAVAFSKKLQNFLVSGSSDHTIKVWSFD--GLSDDAEQ-PMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACV 406 (768)
Q Consensus 330 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i 406 (768)
-..++|+.+.+.+.++-+.+-+|.-||.+ ++...... ....+... ....-..-.+++..+|++.++.-..++|.-
T Consensus 160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~--~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~ 237 (310)
T KOG4499|consen 160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQ--PFESLEPDGMTIDTEGNLYVATFNGGTVQK 237 (310)
T ss_pred CccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCC--CcCCCCCCcceEccCCcEEEEEecCcEEEE
Confidence 35688888878788888888899888844 33211110 00111000 001112235666778999999889999999
Q ss_pred EeCCCCceEEEEeccCCCeEEEEEcc
Q 004214 407 WRLPDLVSVVTFRGHKRGIWSVEFSP 432 (768)
Q Consensus 407 ~d~~~~~~~~~~~~~~~~v~~v~~s~ 432 (768)
+|..+++.+..+.-....|+|++|--
T Consensus 238 ~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 238 VDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred ECCCCCcEEEEEEcCCCceEEEEecC
Confidence 99999999999998899999999974
No 423
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.43 E-value=5.8 Score=39.43 Aligned_cols=108 Identities=17% Similarity=0.196 Sum_probs=59.3
Q ss_pred eccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEE-CCCCe
Q 004214 419 RGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWT-VRTGE 497 (768)
Q Consensus 419 ~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd-~~~~~ 497 (768)
......+..+..+++|++++++..-....-||--...-...-..-...|..+.|.|++...+.+ ..|.|++=+ ...++
T Consensus 141 ~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~ 219 (302)
T PF14870_consen 141 SETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGE 219 (302)
T ss_dssp -S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEE
T ss_pred cCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcc
Confidence 3445678889999999999998775555677753221122222356789999999998776654 778888776 22333
Q ss_pred EEEE----eccCCCcEEEEEEcCCCCEEEEEeCC
Q 004214 498 CIAT----YDKHEDKIWALAVGKKTEMFATGGSD 527 (768)
Q Consensus 498 ~~~~----~~~~~~~v~~l~~s~~~~~l~s~~~d 527 (768)
.... +..-.-.+..++|.+++..+++|+..
T Consensus 220 ~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G 253 (302)
T PF14870_consen 220 TWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSG 253 (302)
T ss_dssp EE---B-TTSS--S-EEEEEESSSS-EEEEESTT
T ss_pred ccccccCCcccCceeeEEEEecCCCCEEEEeCCc
Confidence 2222 11123347899999998888877654
No 424
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.42 E-value=7.1 Score=42.73 Aligned_cols=72 Identities=17% Similarity=0.273 Sum_probs=48.8
Q ss_pred CCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004214 29 HKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRD 105 (768)
Q Consensus 29 h~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~~ 105 (768)
.-+..-++..+|.... -+. +.-..|+|++. +|+.+.++.-..+.+..|.|+.+. -|+....+|++.++++..
T Consensus 42 p~gGpIAV~r~p~~~~-~~~--~a~~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~g 113 (829)
T KOG2280|consen 42 PFGGPIAVTRSPSKLV-PLY--SARPYIRIFNI-SGQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLG 113 (829)
T ss_pred ccCCceEEEecccccc-ccc--ccceeEEEEec-cccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecch
Confidence 3344456666663211 111 33456999997 788777766555588999998665 677788999999999854
No 425
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.40 E-value=0.6 Score=52.83 Aligned_cols=153 Identities=13% Similarity=0.046 Sum_probs=93.7
Q ss_pred cEEEEEEecCCCcEEEEE-eCCCeEEEEeCCCCCCCCccc-cccceeeEeeccCCCeEEEEEccCC-CEEEEEeCCCcEE
Q 004214 329 AVGAVAFSKKLQNFLVSG-SSDHTIKVWSFDGLSDDAEQP-MNLKAKAVVAAHGKDINSLAVAPND-SLVCTGSQDRTAC 405 (768)
Q Consensus 329 ~v~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~ 405 (768)
++..+...+|+....+.. +.+-.|..||+.......... ..+....+......-..++.|+|.- ...++...|+.|.
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 455566666654333333 334468889988654322111 1111112222233455678888853 3456677888888
Q ss_pred EEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeec----CCCcEEEEEEEeCCCEEEE
Q 004214 406 VWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEG----HTSSVLRASFLTRGAQIVS 481 (768)
Q Consensus 406 i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~s 481 (768)
+..+........--......+|++|+|.|+.++.|-..|++.-|-. .++....+.+ ....|.+++|.....++++
T Consensus 182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred hhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeec-ccceeecccCCCcCCCcceeEEEEecceeEEEE
Confidence 8876543332222234567899999999999999999999998875 3343333332 1468999999887777765
Q ss_pred E
Q 004214 482 C 482 (768)
Q Consensus 482 ~ 482 (768)
-
T Consensus 261 y 261 (1405)
T KOG3630|consen 261 Y 261 (1405)
T ss_pred e
Confidence 3
No 426
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=94.39 E-value=13 Score=43.36 Aligned_cols=30 Identities=10% Similarity=0.031 Sum_probs=22.6
Q ss_pred ceEEEEeeCCcEEEEEEcCCceeeeecCCc
Q 004214 150 EIHFITVGERGIVRMWNADSACLYEQKSSD 179 (768)
Q Consensus 150 ~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~ 179 (768)
..+++..--+|++++-|..+.++++.....
T Consensus 409 ~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~ 438 (1899)
T KOG4659|consen 409 SYYIAVSPVDGTLYVSDPLSKQVWRVSSLE 438 (1899)
T ss_pred eeEEEecCcCceEEecCCCcceEEEeccCC
Confidence 457777778899999988888777665543
No 427
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.24 E-value=1.3 Score=48.27 Aligned_cols=112 Identities=14% Similarity=0.164 Sum_probs=76.7
Q ss_pred CCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEee-cCCCcEEEEEEE--eCCCEEEEEeCCCcEEEEECC----
Q 004214 422 KRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFE-GHTSSVLRASFL--TRGAQIVSCGADGLVKLWTVR---- 494 (768)
Q Consensus 422 ~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s--~~~~~l~s~~~dg~i~iwd~~---- 494 (768)
-...+-+.-|.-++..++-+...++.|||.+.+.....-. ...+.|.++.|. |+|+.+++.|-.+.|.+|.-.
T Consensus 29 i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 29 ISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred CCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence 3344555555556666665556789999998887543332 357889999995 689999999999999998542
Q ss_pred -----CCeEEEEe--ccCC-CcEEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 004214 495 -----TGECIATY--DKHE-DKIWALAVGKKTEMFATGGSDALVNLWHD 535 (768)
Q Consensus 495 -----~~~~~~~~--~~~~-~~v~~l~~s~~~~~l~s~~~dg~v~vw~~ 535 (768)
+..++..+ ..|. .+|.+..|.++|..++++| ..+.|++-
T Consensus 109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred hcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 22334433 2333 6789999999998776654 35777764
No 428
>PHA02790 Kelch-like protein; Provisional
Probab=94.13 E-value=2.5 Score=45.88 Aligned_cols=140 Identities=9% Similarity=0.016 Sum_probs=69.7
Q ss_pred cCCCEEEEEeCCC--cEEEEeCCCCce--EEEEeccCCCeEEEEEccCCCEEEEeeCCC---cEEEEeCCCCceeE--Ee
Q 004214 390 PNDSLVCTGSQDR--TACVWRLPDLVS--VVTFRGHKRGIWSVEFSPVDQVVITASGDK---TIKIWSISDGSCLK--TF 460 (768)
Q Consensus 390 ~~~~~l~~~~~dg--~i~i~d~~~~~~--~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~---~i~iwd~~~~~~~~--~~ 460 (768)
-++.+.++|+.++ .+..||..+.+- +..+.........+ .-+|++.+.|+.++ .+..||..+.+-.. .+
T Consensus 317 ~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~--~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m 394 (480)
T PHA02790 317 ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVA--SINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPST 394 (480)
T ss_pred ECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEE--EECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCC
Confidence 4677888887643 577888765422 11121111111122 23477777777553 46778876543211 11
Q ss_pred ecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEE--eccCCCcEEEEEEcCCCCEEEEEeCC-----CcEEEE
Q 004214 461 EGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIAT--YDKHEDKIWALAVGKKTEMFATGGSD-----ALVNLW 533 (768)
Q Consensus 461 ~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~v~~l~~s~~~~~l~s~~~d-----g~v~vw 533 (768)
...... ..+..-+|+..+.| |.+.+||..+++-... +........ ++ .-+|+..+.||.+ ..+..|
T Consensus 395 ~~~r~~--~~~~~~~~~IYv~G---G~~e~ydp~~~~W~~~~~m~~~r~~~~-~~-v~~~~IYviGG~~~~~~~~~ve~Y 467 (480)
T PHA02790 395 YYPHYK--SCALVFGRRLFLVG---RNAEFYCESSNTWTLIDDPIYPRDNPE-LI-IVDNKLLLIGGFYRGSYIDTIEVY 467 (480)
T ss_pred CCcccc--ceEEEECCEEEEEC---CceEEecCCCCcEeEcCCCCCCccccE-EE-EECCEEEEECCcCCCcccceEEEE
Confidence 101111 11223455555555 4577899877654322 221111222 22 2367778888754 346777
Q ss_pred EcCCH
Q 004214 534 HDSTA 538 (768)
Q Consensus 534 ~~~~~ 538 (768)
|..+.
T Consensus 468 d~~~~ 472 (480)
T PHA02790 468 NNRTY 472 (480)
T ss_pred ECCCC
Confidence 76654
No 429
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=94.04 E-value=2.9 Score=46.19 Aligned_cols=113 Identities=12% Similarity=0.271 Sum_probs=77.5
Q ss_pred CCeEEEEEcc--CCCEEEEEeCCCcEEEEeCCC-------C-------------ceEEEEeccCCCeEEEEEc--cCCCE
Q 004214 381 KDINSLAVAP--NDSLVCTGSQDRTACVWRLPD-------L-------------VSVVTFRGHKRGIWSVEFS--PVDQV 436 (768)
Q Consensus 381 ~~i~~~~~s~--~~~~l~~~~~dg~i~i~d~~~-------~-------------~~~~~~~~~~~~v~~v~~s--~~~~~ 436 (768)
..|+.|.+.. +...|+.+..||.|.+|.+++ . ++...+. ....++.++++ ...++
T Consensus 101 HtIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rl 179 (717)
T PF08728_consen 101 HTINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRL 179 (717)
T ss_pred ceeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceE
Confidence 4466666555 556889999999999997521 0 0112222 34578999999 88899
Q ss_pred EEEeeCCCcEEEEeCCCC--c-eeEEeecCCCcEEEEEEEeCC-----C-EEEEEeCCCcEEEEECC
Q 004214 437 VITASGDKTIKIWSISDG--S-CLKTFEGHTSSVLRASFLTRG-----A-QIVSCGADGLVKLWTVR 494 (768)
Q Consensus 437 l~t~~~d~~i~iwd~~~~--~-~~~~~~~~~~~v~~~~~s~~~-----~-~l~s~~~dg~i~iwd~~ 494 (768)
||+++....|.||-.... + ....-..|...|-+++|.++. . ++++++-.|.+.+|++.
T Consensus 180 IAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 180 IAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred EEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 999998888888865432 1 111111266678889997653 2 78888899999998873
No 430
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=93.87 E-value=8 Score=38.87 Aligned_cols=235 Identities=11% Similarity=0.099 Sum_probs=117.6
Q ss_pred CEEEEEeCCCcEEEEECCC--ceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceE-----------
Q 004214 253 QYLAVATNIEQVQVYDLSS--MSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC----------- 319 (768)
Q Consensus 253 ~~l~~~~~~~~i~i~d~~~--~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----------- 319 (768)
.+++.|+++|...+. ... ....+. .+...|.++. .....+.+++.++....++.+++..-..
T Consensus 14 ~~lL~GTe~Gly~~~-~~~~~~~~~kl--~~~~~v~q~~--v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~ 88 (302)
T smart00036 14 KWLLVGTEEGLYVLN-ISDQPGTLEKL--IGRRSVTQIW--VLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLV 88 (302)
T ss_pred cEEEEEeCCceEEEE-cccCCCCeEEe--cCcCceEEEE--EEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCcccc
Confidence 589999997766665 443 222222 3456888887 6677777677777777799998732211
Q ss_pred ----EEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCcccccccee-eEeeccCCCeEEEEEccC--C
Q 004214 320 ----VGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAK-AVVAAHGKDINSLAVAPN--D 392 (768)
Q Consensus 320 ----~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~s~~--~ 392 (768)
....-+|.......+........++++....+|.++.......... ..+.. ........++..+..+++ .
T Consensus 89 ~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~---~~k~~~~~~~~~~~~~~~~~~~~~~~~ 165 (302)
T smart00036 89 IRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFK---LFKSKFLFPLISPVPVFVELVSSSFER 165 (302)
T ss_pred ccccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhh---hhcccccccCCCCccceEeeecccccc
Confidence 0111234443344444333223445555566777765432210000 00000 000011223334444443 5
Q ss_pred CEEEEEeCCCcEEEEeCCC--CceEE-----EEeccC-CCeEEEEEccCCCEEEEeeCCCcEEEEeCCCC-ceeE--Eee
Q 004214 393 SLVCTGSQDRTACVWRLPD--LVSVV-----TFRGHK-RGIWSVEFSPVDQVVITASGDKTIKIWSISDG-SCLK--TFE 461 (768)
Q Consensus 393 ~~l~~~~~dg~i~i~d~~~--~~~~~-----~~~~~~-~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~-~~~~--~~~ 461 (768)
..+++|+..+...++++.. ..... ...... .++..+.+ +++.+|++-. ....+-|.. | ...+ .+.
T Consensus 166 ~~lcvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~l-~~~e~Llc~~--~~~v~Vn~~-G~~~~r~~~l~ 241 (302)
T smart00036 166 PGICIGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQV-PRDEFLLCYD--EFGVFVNLY-GKRRSRNPILH 241 (302)
T ss_pred eEEEEEEcCCCCeEEEEeecccccccccccccccccccCceEEEEE-CCCeEEEEEC--cEEEEEeCC-CCccccceEEE
Confidence 6777777653344444432 11000 011111 34433343 3455555433 334444543 3 2211 122
Q ss_pred cCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEec
Q 004214 462 GHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD 503 (768)
Q Consensus 462 ~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 503 (768)
-.....++++. ..+|+.-+.++ |.|+++.+++.++++.
T Consensus 242 -w~~~p~~~~~~--~pyll~~~~~~-ievr~l~~~~l~q~i~ 279 (302)
T smart00036 242 -WEFMPESFAYH--SPYLLAFHDNG-IEIRSIKTGELLQELA 279 (302)
T ss_pred -cCCcccEEEEE--CCEEEEEcCCc-EEEEECCCCceEEEEe
Confidence 23445566666 45777766554 9999999999998886
No 431
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.73 E-value=3.6 Score=37.38 Aligned_cols=171 Identities=8% Similarity=-0.009 Sum_probs=89.8
Q ss_pred EEEEEEeC--CCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeE
Q 004214 298 ILIVTGSK--DNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAV 375 (768)
Q Consensus 298 ~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 375 (768)
.++.+.+. ...|++||+.+++.+...+-....+..=-...-+..+..-.-.+|.-..+|.+.... ...
T Consensus 57 ~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~----------lg~ 126 (262)
T COG3823 57 HILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEE----------LGR 126 (262)
T ss_pred EEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhh----------hcc
Confidence 44555443 347999999999887665433222222112222233334444566667777663321 111
Q ss_pred eeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEec--cCCCe---EEEEEccCCCEEEEeeCCCcEEEEe
Q 004214 376 VAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG--HKRGI---WSVEFSPVDQVVITASGDKTIKIWS 450 (768)
Q Consensus 376 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~v---~~v~~s~~~~~l~t~~~d~~i~iwd 450 (768)
+ ...+.-..++ .|+.-|+.++...+++.-|..+.....++.- ...+| +.+.|- +|.+.|-.-.+..|...+
T Consensus 127 ~-~y~GeGWgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~ 202 (262)
T COG3823 127 F-SYEGEGWGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARID 202 (262)
T ss_pred c-ccCCcceeee--cCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEc
Confidence 1 1112223333 3455566666566777777766544433321 12222 233333 355555555556666667
Q ss_pred CCCCceeEEee------------cCCCcEEEEEEEeCCCE-EEEE
Q 004214 451 ISDGSCLKTFE------------GHTSSVLRASFLTRGAQ-IVSC 482 (768)
Q Consensus 451 ~~~~~~~~~~~------------~~~~~v~~~~~s~~~~~-l~s~ 482 (768)
..+|+.+..+. .|....+.+++.|++.. +++|
T Consensus 203 p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 203 PDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred CCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 77777666554 34556778899888754 4443
No 432
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=93.45 E-value=3 Score=35.05 Aligned_cols=110 Identities=12% Similarity=0.147 Sum_probs=71.4
Q ss_pred CCccEEEEEeCCCcEEEEECCCC--------eeEEEecCccceeEEEEEcC-----CCCEEEEEeCCCeEEEEECCCCee
Q 004214 42 TDKSLLFSGSDDATVRVWDLLAK--------KCVATLDKHFSRVTSMAITS-----DGSTLISAGRDKVVNLWDLRDYSC 108 (768)
Q Consensus 42 ~~~~~l~sg~~dg~I~iWd~~~~--------~~~~~l~~h~~~V~~l~fs~-----d~~~L~s~~~dg~i~vWd~~~~~~ 108 (768)
|..+-|+.++.-|.|.|++.... ..+..|. -...|++|+-.+ +...|+.|+ ...+..||+....-
T Consensus 8 G~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~N~d 85 (136)
T PF14781_consen 8 GVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVENNSD 85 (136)
T ss_pred CCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcccCch
Confidence 34445888888999999997643 2344454 344577776443 233455554 56799999999888
Q ss_pred eeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceee
Q 004214 109 KLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLY 173 (768)
Q Consensus 109 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~ 173 (768)
+......+.+.++.+-.-+. ....++..|.+..|.-||.++..++
T Consensus 86 ~Fyke~~DGvn~i~~g~~~~--------------------~~~~l~ivGGncsi~Gfd~~G~e~f 130 (136)
T PF14781_consen 86 LFYKEVPDGVNAIVIGKLGD--------------------IPSPLVIVGGNCSIQGFDYEGNEIF 130 (136)
T ss_pred hhhhhCccceeEEEEEecCC--------------------CCCcEEEECceEEEEEeCCCCcEEE
Confidence 87777777777776643322 1125666677777887777766443
No 433
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=93.43 E-value=10 Score=38.73 Aligned_cols=237 Identities=12% Similarity=0.128 Sum_probs=115.4
Q ss_pred EEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceE---EEee----ecccCcEEEEEEecC---CCcEEEEEeCC------
Q 004214 286 LCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC---VGVG----TGHMGAVGAVAFSKK---LQNFLVSGSSD------ 349 (768)
Q Consensus 286 ~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~----~~~~~~v~~~~~~~~---~~~~l~s~~~d------ 349 (768)
+.|+ +.+++. ++++...|.|++++ ..+.. +... .........++++|+ ...+.++.+..
T Consensus 5 ~~~a--~~pdG~--l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~ 79 (331)
T PF07995_consen 5 RSMA--FLPDGR--LLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGD 79 (331)
T ss_dssp EEEE--EETTSC--EEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSS
T ss_pred eEEE--EeCCCc--EEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCC
Confidence 4555 666654 45567799999999 33332 2222 234456889999994 12233333321
Q ss_pred --CeEEEEeCCCCCCCCccccccceeeEee---ccCCCeEEEEEccCCCEEEEEeCCCc-------------EEEEeCCC
Q 004214 350 --HTIKVWSFDGLSDDAEQPMNLKAKAVVA---AHGKDINSLAVAPNDSLVCTGSQDRT-------------ACVWRLPD 411 (768)
Q Consensus 350 --g~i~iwd~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~s~~~~~l~~~~~dg~-------------i~i~d~~~ 411 (768)
..|.-|.......... .......... ........|+|.|+|.+.++.+..+. |.-.+...
T Consensus 80 ~~~~v~r~~~~~~~~~~~--~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG 157 (331)
T PF07995_consen 80 NDNRVVRFTLSDGDGDLS--SEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDG 157 (331)
T ss_dssp EEEEEEEEEEETTSCEEE--EEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTS
T ss_pred cceeeEEEeccCCccccc--cceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccC
Confidence 2333344432200000 0000111111 12345577999999987777665432 22223211
Q ss_pred C-------------ceEEEEeccCCCeEEEEEccC-CCEEEEe-eCCCcEEEEeCCCC----------------------
Q 004214 412 L-------------VSVVTFRGHKRGIWSVEFSPV-DQVVITA-SGDKTIKIWSISDG---------------------- 454 (768)
Q Consensus 412 ~-------------~~~~~~~~~~~~v~~v~~s~~-~~~l~t~-~~d~~i~iwd~~~~---------------------- 454 (768)
. ....--.++. ....++|+|. |+++++= +.|+.=.|.-+..|
T Consensus 158 ~~p~dnP~~~~~~~~~~i~A~GlR-N~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~ 236 (331)
T PF07995_consen 158 SIPADNPFVGDDGADSEIYAYGLR-NPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDA 236 (331)
T ss_dssp SB-TTSTTTTSTTSTTTEEEE--S-EEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTG
T ss_pred cCCCCCccccCCCceEEEEEeCCC-ccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccc
Confidence 0 0000011222 3457899998 6655542 22222222222111
Q ss_pred -------ceeEEeecCCCcEEEEEEEeC-------CCEEEEEeCCCcEEEEECCCCeEEE---E-eccCCCcEEEEEEcC
Q 004214 455 -------SCLKTFEGHTSSVLRASFLTR-------GAQIVSCGADGLVKLWTVRTGECIA---T-YDKHEDKIWALAVGK 516 (768)
Q Consensus 455 -------~~~~~~~~~~~~v~~~~~s~~-------~~~l~s~~~dg~i~iwd~~~~~~~~---~-~~~~~~~v~~l~~s~ 516 (768)
.++..+. +...++.+.|... |.++++.-..+.|....+..+..+. . +.....++..+++.|
T Consensus 237 ~~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~p 315 (331)
T PF07995_consen 237 PSCPGFVPPVFAYP-PHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGP 315 (331)
T ss_dssp SS-TTS---SEEET-TT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEET
T ss_pred cCCCCcCccceeec-CccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcC
Confidence 1223333 4466777888643 4466665556688888877553322 2 233455899999999
Q ss_pred CCCEEEEEeCCCcEE
Q 004214 517 KTEMFATGGSDALVN 531 (768)
Q Consensus 517 ~~~~l~s~~~dg~v~ 531 (768)
||.+.++...+|.|.
T Consensus 316 DG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 316 DGALYVSDDSDGKIY 330 (331)
T ss_dssp TSEEEEEE-TTTTEE
T ss_pred CCeEEEEECCCCeEe
Confidence 999999988888764
No 434
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=93.38 E-value=4.3 Score=34.20 Aligned_cols=122 Identities=16% Similarity=0.119 Sum_probs=72.2
Q ss_pred EccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEec----CCCCEEEEEeCCCcEEEEECCCce
Q 004214 198 VLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLG----EEEQYLAVATNIEQVQVYDLSSMS 273 (768)
Q Consensus 198 ~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~l~~~~~~~~i~i~d~~~~~ 273 (768)
|......|++++..|++.+++....................+..|++++--+ .+...|++|+. ..+..||+....
T Consensus 6 fDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~~N~ 84 (136)
T PF14781_consen 6 FDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVENNS 84 (136)
T ss_pred eCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcccCc
Confidence 4455667899999999999987655432211222234455667778776643 34556666666 889999998776
Q ss_pred eeeeeeCCccceEEEeeeeecC-CCEEEEEEeCCCeEEEEeCCCceEEEe
Q 004214 274 CSYVLAGHSEIVLCLDTCALSS-GKILIVTGSKDNSVRLWDSESRCCVGV 322 (768)
Q Consensus 274 ~~~~~~~~~~~v~~l~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~ 322 (768)
.+..- .-.+.+.++.+..... ... ++..+.+..|.=||....+...+
T Consensus 85 d~Fyk-e~~DGvn~i~~g~~~~~~~~-l~ivGGncsi~Gfd~~G~e~fWt 132 (136)
T PF14781_consen 85 DLFYK-EVPDGVNAIVIGKLGDIPSP-LVIVGGNCSIQGFDYEGNEIFWT 132 (136)
T ss_pred hhhhh-hCccceeEEEEEecCCCCCc-EEEECceEEEEEeCCCCcEEEEE
Confidence 55332 2235566654333333 333 44444456676666665554443
No 435
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=93.30 E-value=2.9 Score=45.17 Aligned_cols=77 Identities=10% Similarity=0.201 Sum_probs=46.3
Q ss_pred cCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEE-ECCCCeEE
Q 004214 421 HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLW-TVRTGECI 499 (768)
Q Consensus 421 ~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw-d~~~~~~~ 499 (768)
|.+.|--+..+..+..|+--...-.+.++|+.+.+....+ ...+.+.|.|....++.-+.|. +.|| ++.-.+.+
T Consensus 336 h~~~vdwielne~~~kllfrdkk~kl~l~di~s~qksmil----nfcsymqwvp~sdvivaqn~dn-l~iwyn~d~peqv 410 (1636)
T KOG3616|consen 336 HEGAVDWIELNERAHKLLFRDKKLKLHLVDIESCQKSMIL----NFCSYMQWVPGSDVIVAQNGDN-LCIWYNIDAPEQV 410 (1636)
T ss_pred ccccccceeccchhhhhhcccccceeEEEEcccchHHHHH----HHhhhheeccCcceEEecCCCc-eEEEecCCcchhh
Confidence 6667666666666655655555566788888764322111 1234578888877777666555 5665 56555544
Q ss_pred EEe
Q 004214 500 ATY 502 (768)
Q Consensus 500 ~~~ 502 (768)
..+
T Consensus 411 t~~ 413 (1636)
T KOG3616|consen 411 TMF 413 (1636)
T ss_pred eee
Confidence 443
No 436
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=93.30 E-value=1.8 Score=44.65 Aligned_cols=149 Identities=9% Similarity=0.097 Sum_probs=93.2
Q ss_pred cCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCC------cEEEEEeCCCeEEEEeCCCCCCCCccc
Q 004214 294 SSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQ------NFLVSGSSDHTIKVWSFDGLSDDAEQP 367 (768)
Q Consensus 294 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~------~~l~s~~~dg~i~iwd~~~~~~~~~~~ 367 (768)
.+...++..|+....++-.|++.|+.+.....|... -+.|.|..+ ..-+.|-.+..|.-.|.+....
T Consensus 477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gN----- 549 (776)
T COG5167 477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGN----- 549 (776)
T ss_pred CCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCC-----
Confidence 344444556677778888899999999998887765 566776532 1123444455554445442210
Q ss_pred cccceeeEe-eccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcE
Q 004214 368 MNLKAKAVV-AAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTI 446 (768)
Q Consensus 368 ~~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i 446 (768)
........ ........|..-. ...++|+|+..|-|++||--.......+.+-...|..+..+.+|.++++.|. ..+
T Consensus 550 -Ki~v~esKdY~tKn~Fss~~tT-esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yl 626 (776)
T COG5167 550 -KIKVVESKDYKTKNKFSSGMTT-ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYL 626 (776)
T ss_pred -ceeeeeehhccccccccccccc-cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceE
Confidence 00000000 0011122222222 3458999999999999997655555567777889999999999999888877 667
Q ss_pred EEEeCC
Q 004214 447 KIWSIS 452 (768)
Q Consensus 447 ~iwd~~ 452 (768)
.+-|+.
T Consensus 627 lL~d~~ 632 (776)
T COG5167 627 LLTDVP 632 (776)
T ss_pred EEEecc
Confidence 777763
No 437
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=93.23 E-value=0.1 Score=53.03 Aligned_cols=237 Identities=14% Similarity=0.143 Sum_probs=135.5
Q ss_pred eecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccc
Q 004214 292 ALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLK 371 (768)
Q Consensus 292 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 371 (768)
+.+.+.. ++.++.+..+..||-........ ..++..-.++|..++...++.+-..+.+.+||+.......
T Consensus 42 w~~e~~n-lavaca~tiv~~YD~agq~~le~--n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqq------- 111 (615)
T KOG2247|consen 42 WRPEGHN-LAVACANTIVIYYDKAGQVILEL--NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQ------- 111 (615)
T ss_pred EecCCCc-eehhhhhhHHHhhhhhcceeccc--CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHH-------
Confidence 6677777 77777777888888544322221 2345566788888888778888889999999997532110
Q ss_pred eeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeC
Q 004214 372 AKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSI 451 (768)
Q Consensus 372 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~ 451 (768)
...-..|... -+.|++.+..++.+...|.+.|++..+.+.+...-.|...++++++.+.+.. +.++.|..+.+-..
T Consensus 112 -LE~gg~~s~s--ll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~v-il~dcd~~L~v~~q 187 (615)
T KOG2247|consen 112 -LESGGTSSKS--LLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYV-ILCDCDNTLSVTTQ 187 (615)
T ss_pred -HhccCcchHH--HHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEeccccee-eecCcHHHHHHhhh
Confidence 0000111122 2678999999999999999999999888777766669999999999996654 44445554443322
Q ss_pred CCCceeEEee--cCCCcEE--EE---EEEeCCCEEEEEeCCCcEEEE----ECCCCeEEEEeccCCCcEEEEEEcCCCCE
Q 004214 452 SDGSCLKTFE--GHTSSVL--RA---SFLTRGAQIVSCGADGLVKLW----TVRTGECIATYDKHEDKIWALAVGKKTEM 520 (768)
Q Consensus 452 ~~~~~~~~~~--~~~~~v~--~~---~~s~~~~~l~s~~~dg~i~iw----d~~~~~~~~~~~~~~~~v~~l~~s~~~~~ 520 (768)
. ++.....+ +...... .+ .|..-|..+.+.-. |.+.+. +-..+..-..+..-.+.+.+..|--||.
T Consensus 188 e-geta~ltevggepdnm~~~y~k~n~w~kage~m~sVvs-gKkhl~yak~nE~D~pval~fq~~~gni~cyrwylDg~- 264 (615)
T KOG2247|consen 188 E-GETASLTEVGGEPDNMDFFYGKVNGWGKAGETMVSVVS-GKKHLMYAKYNELDEPVALQFQEKYGNIHCYRWYLDGY- 264 (615)
T ss_pred c-cceeeeeeccCccchhhhheeeeeccccccceeeeeee-cHHHHHHHhhcCCCCccceEeeecCCceeEEEEecccc-
Confidence 1 12111111 1111000 11 12223333333221 111111 0011111124555567788888888875
Q ss_pred EEEEeCCCcEEEEEcCCHHHHHHHH
Q 004214 521 FATGGSDALVNLWHDSTAAEREEAF 545 (768)
Q Consensus 521 l~s~~~dg~v~vw~~~~~~~~~~~~ 545 (768)
|.-+..-|.|..-...+++...+-.
T Consensus 265 i~igf~ag~iV~iS~h~aeLgaeff 289 (615)
T KOG2247|consen 265 ILIGFDAGYIVSISAHNAELGAEFF 289 (615)
T ss_pred ccccccceeEEEEeccchHHHHHHH
Confidence 3445555555555566665554433
No 438
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.20 E-value=18 Score=40.96 Aligned_cols=33 Identities=21% Similarity=0.283 Sum_probs=24.8
Q ss_pred cceeEEEEccC---CCceEEEEecCeEEEEeeccCc
Q 004214 191 RGFTAATVLPS---NQGLLCVTADQQLLLYTTVEVP 223 (768)
Q Consensus 191 ~~~~~~~~~~~---~~~l~~~~~dg~i~~~~~~~~~ 223 (768)
..+..+.|+|. +..+++.+.|+.+++|++....
T Consensus 147 ~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 147 LEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred ceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCC
Confidence 34556667766 5788999999999999987544
No 439
>PRK13684 Ycf48-like protein; Provisional
Probab=92.74 E-value=13 Score=38.03 Aligned_cols=151 Identities=14% Similarity=0.128 Sum_probs=87.4
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEE-EeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeE
Q 004214 380 GKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVT-FRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLK 458 (768)
Q Consensus 380 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~ 458 (768)
...+.++.+.|++.+++++. .|.+..-.-..++.-.. ...-...++++.+.|+++.++++. .|.+++=....|..-.
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~-~G~~~~~s~d~G~sW~ 249 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLAR-GGQIRFNDPDDLESWS 249 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEec-CCEEEEccCCCCCccc
Confidence 45678899999987766654 45444321112222222 223446789999999998877764 4766532344443322
Q ss_pred Eeec----CCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEec---cCCCcEEEEEEcCCCCEEEEEeCCCcEE
Q 004214 459 TFEG----HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD---KHEDKIWALAVGKKTEMFATGGSDALVN 531 (768)
Q Consensus 459 ~~~~----~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~l~~s~~~~~l~s~~~dg~v~ 531 (768)
.... ....+..+.+.+++..++ ++.+|.+. .....|+.-.... .-......+.|..+++.++ .|..|.|.
T Consensus 250 ~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~il 326 (334)
T PRK13684 250 KPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVLL 326 (334)
T ss_pred cccCCccccccceeeEEEcCCCCEEE-EcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceEE
Confidence 2221 123577888988876554 55567554 4455555444432 2223577777776666554 56678887
Q ss_pred EEEc
Q 004214 532 LWHD 535 (768)
Q Consensus 532 vw~~ 535 (768)
-|+-
T Consensus 327 ~~~~ 330 (334)
T PRK13684 327 RYVG 330 (334)
T ss_pred EecC
Confidence 7764
No 440
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=92.72 E-value=4.5 Score=45.65 Aligned_cols=71 Identities=21% Similarity=0.353 Sum_probs=44.0
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEeCCC----------Cce---EEEE--------eccCCCeEEEEEccC---CCE
Q 004214 381 KDINSLAVAPNDSLVCTGSQDRTACVWRLPD----------LVS---VVTF--------RGHKRGIWSVEFSPV---DQV 436 (768)
Q Consensus 381 ~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~----------~~~---~~~~--------~~~~~~v~~v~~s~~---~~~ 436 (768)
-.|..+.++|+|++++..|..| |.|..+.. ++. ..++ ..+...|..+.|+|. +..
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 4688999999999999988865 44444432 111 0111 012345666777775 356
Q ss_pred EEEeeCCCcEEEEeCC
Q 004214 437 VITASGDKTIKIWSIS 452 (768)
Q Consensus 437 l~t~~~d~~i~iwd~~ 452 (768)
|++-..|+++|+||+.
T Consensus 164 l~vLtsdn~lR~y~~~ 179 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDIS 179 (717)
T ss_pred EEEEecCCEEEEEecC
Confidence 6666677777777763
No 441
>PRK10115 protease 2; Provisional
Probab=92.41 E-value=24 Score=40.26 Aligned_cols=234 Identities=9% Similarity=0.019 Sum_probs=111.6
Q ss_pred eecCCCEEEEEEeCCC----eEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCC-----CeEEEEeCCCCCC
Q 004214 292 ALSSGKILIVTGSKDN----SVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSD-----HTIKVWSFDGLSD 362 (768)
Q Consensus 292 ~~~~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~ 362 (768)
++++++.+.++...+| .|++.|+.++..+...-.. .-..++|.++++.++++...+ ..|..+++.+...
T Consensus 134 ~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~--~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~ 211 (686)
T PRK10115 134 ITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN--VEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPAS 211 (686)
T ss_pred ECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC--cceEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChh
Confidence 5666676444444333 6888899887643221111 125689999988766665533 3566677664411
Q ss_pred CCccccccceeeEeeccCCCeE-EEEEccCCCEEEEEeC---CCcEEEEeCC--CCceEEEEeccCCCeEEEEEccCCCE
Q 004214 363 DAEQPMNLKAKAVVAAHGKDIN-SLAVAPNDSLVCTGSQ---DRTACVWRLP--DLVSVVTFRGHKRGIWSVEFSPVDQV 436 (768)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~i~-~~~~s~~~~~l~~~~~---dg~i~i~d~~--~~~~~~~~~~~~~~v~~v~~s~~~~~ 436 (768)
.....+........ ....+.++++++..+. ++.+.+++.. ++.....+.........+. +..+.+
T Consensus 212 --------~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l 282 (686)
T PRK10115 212 --------QDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRF 282 (686)
T ss_pred --------HCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEE
Confidence 11112222222222 3334447777665543 3468888843 3332222222222222222 333333
Q ss_pred EEEeeC---CCcEEEEeCCCCceeEEeecC-C-CcEEEEEEEeCCCEEEEEeCCCcEEE--EECCCCeEEEEec-cCCCc
Q 004214 437 VITASG---DKTIKIWSISDGSCLKTFEGH-T-SSVLRASFLTRGAQIVSCGADGLVKL--WTVRTGECIATYD-KHEDK 508 (768)
Q Consensus 437 l~t~~~---d~~i~iwd~~~~~~~~~~~~~-~-~~v~~~~~s~~~~~l~s~~~dg~i~i--wd~~~~~~~~~~~-~~~~~ 508 (768)
++.... ...|...++.+......+..+ . ..+..+.+. .+..+++...+|.-++ ++..++ .+..+. .....
T Consensus 283 y~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~-~~~~l~~~~~~~ 360 (686)
T PRK10115 283 YLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTR-EVIGIAFDDPAY 360 (686)
T ss_pred EEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCC-ceEEecCCCCce
Confidence 333222 223444444421222344444 3 367777776 3345556666775444 454333 334433 22223
Q ss_pred EEEEEEc--CCC-CEEEEEe---CCCcEEEEEcCCH
Q 004214 509 IWALAVG--KKT-EMFATGG---SDALVNLWHDSTA 538 (768)
Q Consensus 509 v~~l~~s--~~~-~~l~s~~---~dg~v~vw~~~~~ 538 (768)
+..+.++ +++ .++++.+ .-+.+..++..++
T Consensus 361 ~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~ 396 (686)
T PRK10115 361 VTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTG 396 (686)
T ss_pred EeeecccCCCCCceEEEEEecCCCCCEEEEEECCCC
Confidence 3334444 333 3444433 2455777777664
No 442
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.22 E-value=21 Score=39.28 Aligned_cols=54 Identities=15% Similarity=0.182 Sum_probs=39.9
Q ss_pred CCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEee--cCCCcEEEEEEEeCC
Q 004214 422 KRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFE--GHTSSVLRASFLTRG 476 (768)
Q Consensus 422 ~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~--~~~~~v~~~~~s~~~ 476 (768)
...+..+..||+.++|+--..+|.|.+-+.+..++...+. .|.. ...++|..+.
T Consensus 216 ~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~-p~qm~Wcgnd 271 (829)
T KOG2280|consen 216 NSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDP-PKQMAWCGND 271 (829)
T ss_pred CceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCc-hHhceeecCC
Confidence 3567788999999999999999999999988777777666 2322 2256665443
No 443
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=91.94 E-value=1.2 Score=41.99 Aligned_cols=66 Identities=11% Similarity=0.226 Sum_probs=51.2
Q ss_pred EEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEe-------c-------cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 004214 470 ASFLTRGAQIVSCGADGLVKLWTVRTGECIATY-------D-------KHEDKIWALAVGKKTEMFATGGSDALVNLWHD 535 (768)
Q Consensus 470 ~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-------~-------~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~ 535 (768)
+.+..++++|++.+.+|.+++||+.+++++..- . .....|..+.++.+|.-+++-+ +|..+.|+.
T Consensus 16 ~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~ 94 (219)
T PF07569_consen 16 SFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSP 94 (219)
T ss_pred EEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecc
Confidence 345678899999999999999999998765432 1 2556788999999998877765 577888875
Q ss_pred C
Q 004214 536 S 536 (768)
Q Consensus 536 ~ 536 (768)
.
T Consensus 95 ~ 95 (219)
T PF07569_consen 95 D 95 (219)
T ss_pred c
Confidence 4
No 444
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=91.91 E-value=7.1 Score=40.64 Aligned_cols=99 Identities=12% Similarity=0.121 Sum_probs=54.6
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEE-eCCC-----Cce--EE-EEec----cCCCeEEEEEccCCCEEEEeeCC----
Q 004214 381 KDINSLAVAPNDSLVCTGSQDRTACVW-RLPD-----LVS--VV-TFRG----HKRGIWSVEFSPVDQVVITASGD---- 443 (768)
Q Consensus 381 ~~i~~~~~s~~~~~l~~~~~dg~i~i~-d~~~-----~~~--~~-~~~~----~~~~v~~v~~s~~~~~l~t~~~d---- 443 (768)
.....+++.++| +++ +... .|..| |... ++. +. .+.. +......++|.|||.+.++-+..
T Consensus 72 ~~p~Gi~~~~~G-lyV-~~~~-~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~ 148 (367)
T TIGR02604 72 SMVTGLAVAVGG-VYV-ATPP-DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASK 148 (367)
T ss_pred CCccceeEecCC-EEE-eCCC-eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCce
Confidence 456889999988 444 4444 34444 4421 121 11 1222 12347789999999877655421
Q ss_pred ---------------CcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEe
Q 004214 444 ---------------KTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCG 483 (768)
Q Consensus 444 ---------------~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 483 (768)
|.|.-++...++. ..+...-.....++|+++|+++++-.
T Consensus 149 ~~~~~~~~~~~~~~~g~i~r~~pdg~~~-e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 149 VTRPGTSDESRQGLGGGLFRYNPDGGKL-RVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred eccCCCccCcccccCceEEEEecCCCeE-EEEecCcCCCccceECCCCCEEEEcc
Confidence 3455555544432 22322223345789999998876644
No 445
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=91.85 E-value=6.9 Score=40.62 Aligned_cols=140 Identities=14% Similarity=0.137 Sum_probs=87.2
Q ss_pred CCCEEE-EEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCC--------CEEEEeeCCCcEEEEeCC-CCceeEEe
Q 004214 391 NDSLVC-TGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVD--------QVVITASGDKTIKIWSIS-DGSCLKTF 460 (768)
Q Consensus 391 ~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~--------~~l~t~~~d~~i~iwd~~-~~~~~~~~ 460 (768)
+..+|. .|+....++-.|++.|+.+.....|... -+.|.|+. +.|+-- .+..|.-.|.+ .|..+...
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGl-S~~svFrIDPR~~gNKi~v~ 554 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGL-SDYSVFRIDPRARGNKIKVV 554 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEee-cccceEEecccccCCceeee
Confidence 444443 3445557788888999999888877665 56777753 344433 44445444543 33333322
Q ss_pred ecCCCcEEEEEEEe----CCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 004214 461 EGHTSSVLRASFLT----RGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHD 535 (768)
Q Consensus 461 ~~~~~~v~~~~~s~----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~ 535 (768)
+ ...-++.-.|+. ...|++.++..|.|++||--.-.--..+.+....|-.+..+.+|.++++.+.. .+.+-+.
T Consensus 555 e-sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~-yllL~d~ 631 (776)
T COG5167 555 E-SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN-YLLLTDV 631 (776)
T ss_pred e-ehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc-eEEEEec
Confidence 2 222233333332 34499999999999999954433334456677889999999999998887765 3455443
No 446
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=91.76 E-value=13 Score=37.87 Aligned_cols=152 Identities=14% Similarity=0.207 Sum_probs=87.0
Q ss_pred cCcEEEEEEecCCCcEEEEEeCCCe------EEEEeCCCCCCCCccccccceeeEeec--------cCCCeEEEEEccCC
Q 004214 327 MGAVGAVAFSKKLQNFLVSGSSDHT------IKVWSFDGLSDDAEQPMNLKAKAVVAA--------HGKDINSLAVAPND 392 (768)
Q Consensus 327 ~~~v~~~~~~~~~~~~l~s~~~dg~------i~iwd~~~~~~~~~~~~~~~~~~~~~~--------~~~~i~~~~~s~~~ 392 (768)
-+.+..+.+.+++. .+++.+.+|. +..+++......... ........+.. ..-+.-+|++.++|
T Consensus 19 ~GGlSgl~~~~~~~-~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g 96 (326)
T PF13449_consen 19 FGGLSGLDYDPDDG-RFYAVSDRGPNKGPPRFYTFRIDYDQGGIGG-VTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDG 96 (326)
T ss_pred cCcEeeEEEeCCCC-EEEEEECCCCCCCCCcEEEEEeeccCCCccc-eEeccceeccCCCCCcCCcCCCChhHeEEecCC
Confidence 45677888886544 4666677776 555555431110000 00000000111 11255688887788
Q ss_pred CEEEEEeCC------CcEEEEeCCCCceEEEEe---------------ccCCCeEEEEEccCCCEEEEeeC-----CC--
Q 004214 393 SLVCTGSQD------RTACVWRLPDLVSVVTFR---------------GHKRGIWSVEFSPVDQVVITASG-----DK-- 444 (768)
Q Consensus 393 ~~l~~~~~d------g~i~i~d~~~~~~~~~~~---------------~~~~~v~~v~~s~~~~~l~t~~~-----d~-- 444 (768)
.++++.-.+ ..|..++.. ++....+. ..+....+++++|+|+.|+++.+ |+
T Consensus 97 ~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~ 175 (326)
T PF13449_consen 97 SFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPR 175 (326)
T ss_pred CEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcc
Confidence 888877666 678888866 55443331 13457889999999997766543 22
Q ss_pred c-------EEEE--eCCC-CceeEEe----ec-----CCCcEEEEEEEeCCCEEEE
Q 004214 445 T-------IKIW--SISD-GSCLKTF----EG-----HTSSVLRASFLTRGAQIVS 481 (768)
Q Consensus 445 ~-------i~iw--d~~~-~~~~~~~----~~-----~~~~v~~~~~s~~~~~l~s 481 (768)
. ++|+ |..+ +.....+ .. ....++.+.+.+++++|+.
T Consensus 176 ~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 176 ANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred cccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 1 4554 4444 3233322 22 4567889999999987764
No 447
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=91.58 E-value=0.82 Score=29.65 Aligned_cols=31 Identities=19% Similarity=0.199 Sum_probs=25.8
Q ss_pred ceeEEEEEcCCC---CEEEEEeCCCeEEEEECCC
Q 004214 75 SRVTSMAITSDG---STLISAGRDKVVNLWDLRD 105 (768)
Q Consensus 75 ~~V~~l~fs~d~---~~L~s~~~dg~i~vWd~~~ 105 (768)
+.|.++.|||+. .+|+.+-.-|.|.++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 468999999854 4788888889999999985
No 448
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=91.54 E-value=4.1 Score=38.50 Aligned_cols=70 Identities=13% Similarity=0.282 Sum_probs=51.5
Q ss_pred EccCCCEEEEeeCCCcEEEEeCCCCceeEEe-------e-------cCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCC
Q 004214 430 FSPVDQVVITASGDKTIKIWSISDGSCLKTF-------E-------GHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRT 495 (768)
Q Consensus 430 ~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~-------~-------~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 495 (768)
+..++.+|++-+.+|.+++||+.+++++..- . .....|..+.++.+|.-+++-+ +|..+.|+..-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 4456888999999999999999988765332 1 2556788888888888776655 57888998655
Q ss_pred CeEEE
Q 004214 496 GECIA 500 (768)
Q Consensus 496 ~~~~~ 500 (768)
+.-+.
T Consensus 97 ~~W~~ 101 (219)
T PF07569_consen 97 GCWIR 101 (219)
T ss_pred ceeEE
Confidence 44333
No 449
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=91.51 E-value=13 Score=37.85 Aligned_cols=155 Identities=15% Similarity=0.280 Sum_probs=95.3
Q ss_pred CCeEEEEEccCCCEEEEEeCCCc------EEEEeCCC--C--ceE-----EEEeccCC--------CeEEEEEccCCCEE
Q 004214 381 KDINSLAVAPNDSLVCTGSQDRT------ACVWRLPD--L--VSV-----VTFRGHKR--------GIWSVEFSPVDQVV 437 (768)
Q Consensus 381 ~~i~~~~~s~~~~~l~~~~~dg~------i~i~d~~~--~--~~~-----~~~~~~~~--------~v~~v~~s~~~~~l 437 (768)
+.+..+.+.|++..+++.+.+|. +..+++.. . ..+ ..+....+ ...+|++.++|.++
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~ 99 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW 99 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence 56788999976666666677777 66666543 1 111 11111111 34478887888888
Q ss_pred EEeeCC------CcEEEEeCCCCceeEEee---------------cCCCcEEEEEEEeCCCEEEEEeC-----CC--c--
Q 004214 438 ITASGD------KTIKIWSISDGSCLKTFE---------------GHTSSVLRASFLTRGAQIVSCGA-----DG--L-- 487 (768)
Q Consensus 438 ~t~~~d------~~i~iwd~~~~~~~~~~~---------------~~~~~v~~~~~s~~~~~l~s~~~-----dg--~-- 487 (768)
++.-.+ ..|+.++.. |+.+..+. ..+...-.++++|+|+.|+++.. |+ .
T Consensus 100 is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~ 178 (326)
T PF13449_consen 100 ISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRANP 178 (326)
T ss_pred EEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccccc
Confidence 887777 789999976 76655542 13456788999999997766543 22 1
Q ss_pred -----EEE--EECCC-CeEEE----Eecc-----CCCcEEEEEEcCCCCEEEEE-----eCCCcEEEEEcC
Q 004214 488 -----VKL--WTVRT-GECIA----TYDK-----HEDKIWALAVGKKTEMFATG-----GSDALVNLWHDS 536 (768)
Q Consensus 488 -----i~i--wd~~~-~~~~~----~~~~-----~~~~v~~l~~s~~~~~l~s~-----~~dg~v~vw~~~ 536 (768)
+++ ||..+ ++... .+.. ....|..+.+-+++++|+-- +....++|+.+.
T Consensus 179 ~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~ 249 (326)
T PF13449_consen 179 DNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRVD 249 (326)
T ss_pred ccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEEE
Confidence 444 45544 32332 2222 34678889999999877642 123456666654
No 450
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=91.30 E-value=8.3 Score=42.82 Aligned_cols=142 Identities=9% Similarity=0.063 Sum_probs=88.5
Q ss_pred CCEEEEEeCCCcEEEEeCCCCceEE------EEe----------------ccCCCeEEEEEcc--CCCEEEEeeCCCcEE
Q 004214 392 DSLVCTGSQDRTACVWRLPDLVSVV------TFR----------------GHKRGIWSVEFSP--VDQVVITASGDKTIK 447 (768)
Q Consensus 392 ~~~l~~~~~dg~i~i~d~~~~~~~~------~~~----------------~~~~~v~~v~~s~--~~~~l~t~~~d~~i~ 447 (768)
..+++++. .+.|.||++....... .+. .....|+.|.... ....|+.+..||.|.
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL 127 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence 56666655 6789999976432211 110 0112344444333 346889999999999
Q ss_pred EEeCCC-------C-------------ceeEEeecCCCcEEEEEEE--eCCCEEEEEeCCCcEEEEECCCC--eEEE-Ee
Q 004214 448 IWSISD-------G-------------SCLKTFEGHTSSVLRASFL--TRGAQIVSCGADGLVKLWTVRTG--ECIA-TY 502 (768)
Q Consensus 448 iwd~~~-------~-------------~~~~~~~~~~~~v~~~~~s--~~~~~l~s~~~dg~i~iwd~~~~--~~~~-~~ 502 (768)
+|.+++ . ++...+. -...++++++. ...++||+++....|.||-.... +... .-
T Consensus 128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s 206 (717)
T PF08728_consen 128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPS 206 (717)
T ss_pred EEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccc
Confidence 996521 0 0112222 34578889988 77778888888888888755432 1111 11
Q ss_pred ccCCCcEEEEEEcCCC---C---EEEEEeCCCcEEEEEc
Q 004214 503 DKHEDKIWALAVGKKT---E---MFATGGSDALVNLWHD 535 (768)
Q Consensus 503 ~~~~~~v~~l~~s~~~---~---~l~s~~~dg~v~vw~~ 535 (768)
..|...|.+++|-++. . .|++++-.|.+.+|++
T Consensus 207 ~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 207 HQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred cccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 1256678889887643 2 7888999999988887
No 451
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=91.06 E-value=7.2 Score=42.34 Aligned_cols=68 Identities=15% Similarity=0.371 Sum_probs=46.0
Q ss_pred CCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 004214 30 KGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWD 102 (768)
Q Consensus 30 ~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd 102 (768)
...++++.-+|.|+. ++++..||+|++|++...+.-.... ...+-..+.|...| |+++..|..+.-|.
T Consensus 14 ~e~~~aiqshp~~~s--~v~~~~d~si~lfn~~~r~qski~~-~~~p~~nlv~tnhg--l~~~tsdrr~la~~ 81 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQS--FVLAHQDGSIILFNFIPRRQSKICE-EAKPKENLVFTNHG--LVTATSDRRALAWK 81 (1636)
T ss_pred cceeeeeeecCCCce--EEEEecCCcEEEEeecccchhhhhh-hcCCccceeeeccc--eEEEeccchhheee
Confidence 445778888898877 9999999999999987665522221 22334456676555 56666666666664
No 452
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=91.06 E-value=22 Score=37.16 Aligned_cols=40 Identities=10% Similarity=0.239 Sum_probs=19.2
Q ss_pred EEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCC
Q 004214 488 VKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSD 527 (768)
Q Consensus 488 i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~d 527 (768)
+.+||+.+.+....-..+...-...+..-++..++.||..
T Consensus 314 ~e~yd~~~~~W~~~~~lp~~r~~~~av~~~~~iyv~GG~~ 353 (376)
T PRK14131 314 DEIYALVNGKWQKVGELPQGLAYGVSVSWNNGVLLIGGET 353 (376)
T ss_pred hheEEecCCcccccCcCCCCccceEEEEeCCEEEEEcCCC
Confidence 4578887765322111111111222334467777887753
No 453
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=90.95 E-value=1.1 Score=29.07 Aligned_cols=31 Identities=16% Similarity=0.247 Sum_probs=25.9
Q ss_pred CCeEEEEEccCC---CEEEEeeCCCcEEEEeCCC
Q 004214 423 RGIWSVEFSPVD---QVVITASGDKTIKIWSISD 453 (768)
Q Consensus 423 ~~v~~v~~s~~~---~~l~t~~~d~~i~iwd~~~ 453 (768)
+.|.++.|||.. .+|+.+-.-|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 368899999854 5888888889999999985
No 454
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=90.95 E-value=15 Score=35.11 Aligned_cols=187 Identities=10% Similarity=0.017 Sum_probs=113.5
Q ss_pred EEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeC
Q 004214 330 VGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRL 409 (768)
Q Consensus 330 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~ 409 (768)
-..++-.|+|. .-+++...+.|--.|-.++ +......+.......+.+.|||..-++-+.. -|.-+|-
T Consensus 64 p~dvapapdG~-VWft~qg~gaiGhLdP~tG----------ev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dp 131 (353)
T COG4257 64 PFDVAPAPDGA-VWFTAQGTGAIGHLDPATG----------EVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDP 131 (353)
T ss_pred ccccccCCCCc-eEEecCccccceecCCCCC----------ceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecC
Confidence 34556666655 5566666666655555433 3444445555666788889988877664433 4555666
Q ss_pred CCCceEE-E--EeccCCCeEEEEEccCCCEEEEeeC---------CCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCC
Q 004214 410 PDLVSVV-T--FRGHKRGIWSVEFSPVDQVVITASG---------DKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGA 477 (768)
Q Consensus 410 ~~~~~~~-~--~~~~~~~v~~v~~s~~~~~l~t~~~---------d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~ 477 (768)
++.+... . ...-........|.+.|++-+++.. .+.|++|+.- ....-..++..|+|.
T Consensus 132 kt~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP----------qG~gpyGi~atpdGs 201 (353)
T COG4257 132 KTLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP----------QGGGPYGICATPDGS 201 (353)
T ss_pred cccceEEeecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccC----------CCCCCcceEECCCCc
Confidence 5554322 1 1223446778899999999998763 1234444432 223455688889998
Q ss_pred EEEEEeCCCcEEEEECCCCeE--EEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCH
Q 004214 478 QIVSCGADGLVKLWTVRTGEC--IATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTA 538 (768)
Q Consensus 478 ~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~ 538 (768)
.-++.-.+..|-..|..++.. +-.-......-..+-.+|.|+..+|....+.+.-+|....
T Consensus 202 vwyaslagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~ 264 (353)
T COG4257 202 VWYASLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVT 264 (353)
T ss_pred EEEEeccccceEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccc
Confidence 888777777777778776621 1111111222334455778888888888888877776543
No 455
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=90.84 E-value=16 Score=35.04 Aligned_cols=223 Identities=10% Similarity=0.114 Sum_probs=132.4
Q ss_pred cCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCcccccccee
Q 004214 294 SSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAK 373 (768)
Q Consensus 294 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 373 (768)
+++.. -+++...|.|--.|..+++.....-+....-..+...|++...+.-++ . .|.-.|-.+... ....
T Consensus 71 pdG~V-Wft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~-~-aI~R~dpkt~ev-------t~f~ 140 (353)
T COG4257 71 PDGAV-WFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTG-L-AIGRLDPKTLEV-------TRFP 140 (353)
T ss_pred CCCce-EEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCc-c-eeEEecCcccce-------EEee
Confidence 44433 566666777777788888777666666666667778888764433222 2 333333322110 0001
Q ss_pred eEeeccCCCeEEEEEccCCCEEEEEeCC---------CcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCC
Q 004214 374 AVVAAHGKDINSLAVAPNDSLVCTGSQD---------RTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDK 444 (768)
Q Consensus 374 ~~~~~~~~~i~~~~~s~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~ 444 (768)
.....-........|++.|++-+++... +.|++|+.. ....-..|+..|+|..-++.-.+.
T Consensus 141 lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP----------qG~gpyGi~atpdGsvwyaslagn 210 (353)
T COG4257 141 LPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP----------QGGGPYGICATPDGSVWYASLAGN 210 (353)
T ss_pred cccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccC----------CCCCCcceEECCCCcEEEEecccc
Confidence 1112234567788999999998887532 234444432 233456788899999888877778
Q ss_pred cEEEEeCCCCceeEEee---cCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEE-EEeccCCCcEEEEEEcCCCCE
Q 004214 445 TIKIWSISDGSCLKTFE---GHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECI-ATYDKHEDKIWALAVGKKTEM 520 (768)
Q Consensus 445 ~i~iwd~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~v~~l~~s~~~~~ 520 (768)
.|-..|..++.. ..+. +....-..+--+|.|+.-++....+.+..||..+..-. ..+.+....-.++.+...++.
T Consensus 211 aiaridp~~~~a-ev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~grV 289 (353)
T COG4257 211 AIARIDPFAGHA-EVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGRV 289 (353)
T ss_pred ceEEcccccCCc-ceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeeeccCCcE
Confidence 888878766632 2222 11223334445677888888777888988887654421 223334445566777777777
Q ss_pred EEEEeCCCcEEEEEcCC
Q 004214 521 FATGGSDALVNLWHDST 537 (768)
Q Consensus 521 l~s~~~dg~v~vw~~~~ 537 (768)
..+--.-|.|.-+|..+
T Consensus 290 W~sea~agai~rfdpet 306 (353)
T COG4257 290 WLSEADAGAIGRFDPET 306 (353)
T ss_pred EeeccccCceeecCccc
Confidence 76655566666666544
No 456
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=90.56 E-value=27 Score=37.40 Aligned_cols=165 Identities=14% Similarity=0.117 Sum_probs=91.4
Q ss_pred ceeEEEEEcCCCCEE-EEEe--CCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcce
Q 004214 75 SRVTSMAITSDGSTL-ISAG--RDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEI 151 (768)
Q Consensus 75 ~~V~~l~fs~d~~~L-~s~~--~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (768)
.+|..++|. ||+.+ +|.- ..|.+++=|- ..+...+.+..+.|.|.+.. ...
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds------~viGqFEhV~GlsW~P~~~~-------------------~~p 73 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDS------KVIGQFEHVHGLSWAPPCTA-------------------DTP 73 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCCc------cEeeccceeeeeeecCcccC-------------------CCC
Confidence 478899997 55544 3432 2333333221 23444566888888887542 123
Q ss_pred EEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCc-ccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeE
Q 004214 152 HFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDS-KRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELI 230 (768)
Q Consensus 152 ~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~ 230 (768)
.+++.-....|.+|.+....... ........++...+ .--...+.|+|....+.+.+....-.+++......
T Consensus 74 aLLAVQHkkhVtVWqL~~s~~e~-~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~s------ 146 (671)
T PF15390_consen 74 ALLAVQHKKHVTVWQLCPSTTER-NKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSS------ 146 (671)
T ss_pred ceEEEeccceEEEEEeccCcccc-ccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCc------
Confidence 67777788899999886431111 11111111222111 12334567888888887777666555555543321
Q ss_pred EEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCc
Q 004214 231 LSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSM 272 (768)
Q Consensus 231 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~ 272 (768)
..+.-....+-|.|.+|..++.+++++.++.=.-++||-...
T Consensus 147 rVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 147 RVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred eEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence 112223556789999999744444444455567788986544
No 457
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=90.29 E-value=40 Score=38.90 Aligned_cols=195 Identities=11% Similarity=0.079 Sum_probs=110.7
Q ss_pred CEEEEEeCCCcEEEEECCCceeeee--------eeCCccceEEEeeeeecCCCEEEEEEeC--CCeEEEEeCC----C--
Q 004214 253 QYLAVATNIEQVQVYDLSSMSCSYV--------LAGHSEIVLCLDTCALSSGKILIVTGSK--DNSVRLWDSE----S-- 316 (768)
Q Consensus 253 ~~l~~~~~~~~i~i~d~~~~~~~~~--------~~~~~~~v~~l~~~~~~~~~~~l~~~~~--dg~i~iwd~~----~-- 316 (768)
.-+++-+.+|.+.+|-.+....... +......++..+.++..+|..+++++.. .+.|++|.+. .
T Consensus 63 ~A~i~Vt~nG~l~l~yQ~~~~~~~~~s~~el~s~~~s~~~ithAsi~~~~~g~~ili~t~s~~s~~l~~yrv~I~W~~~~ 142 (753)
T PF11635_consen 63 SACIAVTRNGLLKLWYQKPDGQWNESSTAELESLGSSDDLITHASIAPSDNGKSILIATYSSLSKQLRFYRVQIDWNAKP 142 (753)
T ss_pred eEEEEEecCCeEEEEEEcCCCccceeehhhhccccccccceeeceeeecCCCCEEEEEEccccCCceEEEEEEEeccCcC
Confidence 4455566679999987733222111 2224456666666667777765555544 5788887431 0
Q ss_pred ----ceEEEeee------------c-----------ccCcEEEEEEec------CCCcEEEEEeC----CCeEEEEeCCC
Q 004214 317 ----RCCVGVGT------------G-----------HMGAVGAVAFSK------KLQNFLVSGSS----DHTIKVWSFDG 359 (768)
Q Consensus 317 ----~~~~~~~~------------~-----------~~~~v~~~~~~~------~~~~~l~s~~~----dg~i~iwd~~~ 359 (768)
.+....+. . ....++.+.|-+ ....++++.+. ...|.-|.+..
T Consensus 143 ~~~d~q~~PSl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LthL~ils~~~~~~~~p~Ili~~~~~~~~~SiI~RweL~~ 222 (753)
T PF11635_consen 143 QQIDPQKLPSLFLSHIADETPKDVDPTGWGDPSPDNSMYQLTHLEILSPTPDKDSAPEILIVYSSPNTPSSIIERWELRE 222 (753)
T ss_pred ccCCCCcCCeEEEEeccccccccccCccccccCcccccccceeEEEeccCCCCCCCCeEEEEEEcCCCCCcEEEEEEEEc
Confidence 00000000 0 113566676654 12234544443 34688899875
Q ss_pred CCCCCccc-----------cccceeeE-----eeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEE----e
Q 004214 360 LSDDAEQP-----------MNLKAKAV-----VAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTF----R 419 (768)
Q Consensus 360 ~~~~~~~~-----------~~~~~~~~-----~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~----~ 419 (768)
........ ........ .....+.|.+++...-+..++....||+|.++|..+.+.+... .
T Consensus 223 ~~~~lh~~F~ql~s~~~~~~~~~~~~~l~~~~~i~~~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~ 302 (753)
T PF11635_consen 223 EQQPLHPAFQQLGSKKNSSSEPPPTYRLRRLDDITLNKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGE 302 (753)
T ss_pred cCcccchhhhhcCCCCcCCCCCCCceeEEEecccccCCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccC
Confidence 42111000 00011111 1123467888888888889999999999999998877555444 1
Q ss_pred c---------------cCCCeEEEEEccCCCEEEEeeCCCcEE
Q 004214 420 G---------------HKRGIWSVEFSPVDQVVITASGDKTIK 447 (768)
Q Consensus 420 ~---------------~~~~v~~v~~s~~~~~l~t~~~d~~i~ 447 (768)
. +-.++..++|||.+..++.-..+|.+.
T Consensus 303 ~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~~~~~~~ 345 (753)
T PF11635_consen 303 PPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQIDEDGKTK 345 (753)
T ss_pred CccccccccccccccccCCCCceEEECcccceEEEEecCCCce
Confidence 0 111344578999998888888888765
No 458
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=90.19 E-value=42 Score=38.94 Aligned_cols=167 Identities=7% Similarity=0.070 Sum_probs=93.6
Q ss_pred cccCcEEEEEEe---cC---CCcEEEEEeCCCeEEEEeCCCCCC-----CCccccccceeeEee---ccCCCeEEEEEcc
Q 004214 325 GHMGAVGAVAFS---KK---LQNFLVSGSSDHTIKVWSFDGLSD-----DAEQPMNLKAKAVVA---AHGKDINSLAVAP 390 (768)
Q Consensus 325 ~~~~~v~~~~~~---~~---~~~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~~~~~---~~~~~i~~~~~s~ 390 (768)
....+|..|+|. .. ...+|+ .-....+.|+...-... .........+...+. ..+.+...++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~-Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLA-VRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEE-EEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 356788888887 21 123444 44455666766221110 000001112222222 2345678899999
Q ss_pred -CCCEEEEEeCCCcEEEEeCCCC----c-eEEEEeccC----------CCeEEEEEccCCCEEEEeeCCCcEEEEeCCCC
Q 004214 391 -NDSLVCTGSQDRTACVWRLPDL----V-SVVTFRGHK----------RGIWSVEFSPVDQVVITASGDKTIKIWSISDG 454 (768)
Q Consensus 391 -~~~~l~~~~~dg~i~i~d~~~~----~-~~~~~~~~~----------~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~ 454 (768)
+.+.||+....|...||++... . .......+. ..-..+.|.++.+.|+.++. ..+.++|+.+.
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~~l~~~d~~~~ 234 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-SKLMLIDFESN 234 (765)
T ss_pred CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-CceEEEECCCC
Confidence 5678999999999999999211 1 111111111 22347889888888888766 67999999877
Q ss_pred ceeE--EeecCCCcEEEEEEEeC--CCEEEEEeCCCcEEEEECCC
Q 004214 455 SCLK--TFEGHTSSVLRASFLTR--GAQIVSCGADGLVKLWTVRT 495 (768)
Q Consensus 455 ~~~~--~~~~~~~~v~~~~~s~~--~~~l~s~~~dg~i~iwd~~~ 495 (768)
.... ........|..+.-++. +..++..+ ..|...++..
T Consensus 235 ~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs--~eiiw~~~~~ 277 (765)
T PF10214_consen 235 WQTEYLVTAKTWSWILDVKRSPDNPSHVFILTS--KEIIWLDVKS 277 (765)
T ss_pred CccchhccCCChhheeeEEecCCccceEEEEec--CeEEEEEccC
Confidence 6533 12234567888877776 22222222 4565556554
No 459
>PRK13684 Ycf48-like protein; Provisional
Probab=90.09 E-value=24 Score=36.06 Aligned_cols=151 Identities=15% Similarity=0.126 Sum_probs=85.1
Q ss_pred cCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEE
Q 004214 327 MGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACV 406 (768)
Q Consensus 327 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i 406 (768)
.+.+..+.+.|++. ++..+..|.+..- .+.+.. .. ..........++++.+.|+++.++++ ..|.+.+
T Consensus 172 ~g~~~~i~~~~~g~--~v~~g~~G~i~~s-~~~gg~------tW--~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~ 239 (334)
T PRK13684 172 AGVVRNLRRSPDGK--YVAVSSRGNFYST-WEPGQT------AW--TPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRF 239 (334)
T ss_pred cceEEEEEECCCCe--EEEEeCCceEEEE-cCCCCC------eE--EEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEE
Confidence 45788899988753 4455556655431 111100 11 11112334678899999999887765 4576643
Q ss_pred EeCCCCceEEEEec----cCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEee---cCCCcEEEEEEEeCCCEE
Q 004214 407 WRLPDLVSVVTFRG----HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFE---GHTSSVLRASFLTRGAQI 479 (768)
Q Consensus 407 ~d~~~~~~~~~~~~----~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l 479 (768)
=..+.+..-..... ....+.++.+.|++..++++ .+|.+. .....|+.-.... +-......+.|..+++.+
T Consensus 240 ~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (334)
T PRK13684 240 NDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGF 317 (334)
T ss_pred ccCCCCCccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceE
Confidence 23344332221111 22457889999988766655 557554 4445454433332 223457778887776665
Q ss_pred EEEeCCCcEEEEE
Q 004214 480 VSCGADGLVKLWT 492 (768)
Q Consensus 480 ~s~~~dg~i~iwd 492 (768)
+ .+..|.|.-|+
T Consensus 318 ~-~G~~G~il~~~ 329 (334)
T PRK13684 318 V-LGQRGVLLRYV 329 (334)
T ss_pred E-ECCCceEEEec
Confidence 5 55568877765
No 460
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=90.05 E-value=26 Score=36.35 Aligned_cols=125 Identities=14% Similarity=0.062 Sum_probs=65.0
Q ss_pred EEeecCCCcEEEEECC----CCEEEEEEEc---CC----CcEEEEEEeeCCCccEEEEEeCC----CcEEEEECCCCeeE
Q 004214 3 ALLEGADRKVLVWDVD----GGFCTHYFKG---HK----GVVSSILFHPDTDKSLLFSGSDD----ATVRVWDLLAKKCV 67 (768)
Q Consensus 3 latg~~dg~i~vwd~~----~~~~~~~l~g---h~----~~V~~l~~spd~~~~~l~sg~~d----g~I~iWd~~~~~~~ 67 (768)
++-|=..+.|.|.|+. ..+..+.+.+ +. ..-..+.--|+|+..+-+-|..+ |-+.+.|-++.+..
T Consensus 91 i~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~ 170 (461)
T PF05694_consen 91 ILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVK 170 (461)
T ss_dssp EEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EE
T ss_pred EeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCcccccc
Confidence 3344478999999996 4455555553 21 12222333467765333334443 45888898888887
Q ss_pred EEecCccc---eeEEEEEcCCCCEEEEEe--------------------CCCeEEEEECCCCeeeeeeecce---eEeeE
Q 004214 68 ATLDKHFS---RVTSMAITSDGSTLISAG--------------------RDKVVNLWDLRDYSCKLTVPTYE---MVEAV 121 (768)
Q Consensus 68 ~~l~~h~~---~V~~l~fs~d~~~L~s~~--------------------~dg~i~vWd~~~~~~~~~~~~~~---~v~~~ 121 (768)
........ --..+-+.|..+.++|+. ...++.+||+.+.+.++++...+ .+..+
T Consensus 171 g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEv 250 (461)
T PF05694_consen 171 GRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEV 250 (461)
T ss_dssp EE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEE
T ss_pred ceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEE
Confidence 77654322 345677788888888875 23589999999999999987653 35566
Q ss_pred EecCCC
Q 004214 122 CAIPPG 127 (768)
Q Consensus 122 ~~~~~~ 127 (768)
.|.++.
T Consensus 251 RflH~P 256 (461)
T PF05694_consen 251 RFLHDP 256 (461)
T ss_dssp EE-SST
T ss_pred EecCCC
Confidence 666554
No 461
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=89.94 E-value=21 Score=37.26 Aligned_cols=15 Identities=13% Similarity=0.149 Sum_probs=10.6
Q ss_pred CeEEEEeCCCceEEE
Q 004214 307 NSVRLWDSESRCCVG 321 (768)
Q Consensus 307 g~i~iwd~~~~~~~~ 321 (768)
..+.+||..+.....
T Consensus 189 ~~v~~YD~~t~~W~~ 203 (376)
T PRK14131 189 KEVLSYDPSTNQWKN 203 (376)
T ss_pred ceEEEEECCCCeeeE
Confidence 358889988776544
No 462
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.48 E-value=16 Score=37.59 Aligned_cols=124 Identities=11% Similarity=0.128 Sum_probs=78.2
Q ss_pred CCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCce----EEEEeccCC
Q 004214 348 SDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVS----VVTFRGHKR 423 (768)
Q Consensus 348 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~ 423 (768)
..|.+.-|-+....... +........++|.++.||+|.+.+|+--.+.+|.+++....+. ..+.+..+.
T Consensus 41 rSggatgvvvkgpndDV-------piSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~ 113 (657)
T KOG2377|consen 41 RSGGATGVVVKGPNDDV-------PISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNA 113 (657)
T ss_pred ecCCeeEEEEeCCCCCC-------CceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcc
Confidence 34455666665443211 2223334556999999999999999999999999999843322 222233345
Q ss_pred CeEEEEEccCCCEEEEeeCCCcEEEEeCCC-CceeEEeecCCCcEEEEEEEeCCCEEE
Q 004214 424 GIWSVEFSPVDQVVITASGDKTIKIWSISD-GSCLKTFEGHTSSVLRASFLTRGAQIV 480 (768)
Q Consensus 424 ~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~ 480 (768)
.|...+|+.+. -+|.-...| +-+|-... .+.++..+.|...|.--.|.++.+.++
T Consensus 114 ~IlGF~W~~s~-e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~L 169 (657)
T KOG2377|consen 114 NILGFCWTSST-EIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVIL 169 (657)
T ss_pred eeEEEEEecCe-eEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEe
Confidence 68888998763 444444433 66666433 344555666777787778888776543
No 463
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=89.43 E-value=6.2 Score=43.78 Aligned_cols=73 Identities=21% Similarity=0.319 Sum_probs=46.5
Q ss_pred CCCccEEEEEeCCCcEEEEECCC----CeeEEE-e-cC--------------------ccceeEEEEEcC----CCCEEE
Q 004214 41 DTDKSLLFSGSDDATVRVWDLLA----KKCVAT-L-DK--------------------HFSRVTSMAITS----DGSTLI 90 (768)
Q Consensus 41 d~~~~~l~sg~~dg~I~iWd~~~----~~~~~~-l-~~--------------------h~~~V~~l~fs~----d~~~L~ 90 (768)
+... ++.+..||.+....... +..... + .. ..+.+..+++++ +..+|+
T Consensus 157 ~~~~--l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 234 (547)
T PF11715_consen 157 SEAN--LVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLF 234 (547)
T ss_dssp SSSB--EEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEE
T ss_pred CCCE--EEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEE
Confidence 4455 77778888888877654 222111 1 11 123456666666 778999
Q ss_pred EEeCCCeEEEEECCCCeeeeeeecc
Q 004214 91 SAGRDKVVNLWDLRDYSCKLTVPTY 115 (768)
Q Consensus 91 s~~~dg~i~vWd~~~~~~~~~~~~~ 115 (768)
+.+.|+++++||+.+++++.+....
T Consensus 235 tl~~D~~LRiW~l~t~~~~~~~~~~ 259 (547)
T PF11715_consen 235 TLSRDHTLRIWSLETGQCLATIDLL 259 (547)
T ss_dssp EEETTSEEEEEETTTTCEEEEEETT
T ss_pred EEeCCCeEEEEECCCCeEEEEeccc
Confidence 9999999999999999998877554
No 464
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=88.99 E-value=50 Score=38.13 Aligned_cols=66 Identities=15% Similarity=0.180 Sum_probs=40.9
Q ss_pred EEEEeCCCcEEEEECCCCeeEEEec---CccceeEEEEEcCCC------CEEEEEeCCCeEEEEECCCCeeeeee
Q 004214 47 LFSGSDDATVRVWDLLAKKCVATLD---KHFSRVTSMAITSDG------STLISAGRDKVVNLWDLRDYSCKLTV 112 (768)
Q Consensus 47 l~sg~~dg~I~iWd~~~~~~~~~l~---~h~~~V~~l~fs~d~------~~L~s~~~dg~i~vWd~~~~~~~~~~ 112 (768)
++.+-..|.+.-+-......+..+. .-...|.|+++.++. ++++.++.|+++++..+.-..++..+
T Consensus 552 iVvalSngelvyfe~d~sgql~E~~er~tl~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~d~l~~l 626 (1205)
T KOG1898|consen 552 IVVALSNGELVYFEGDVSGQLNEFTERVTLSTDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPSDCLQPL 626 (1205)
T ss_pred EEEEccCCeEEEEEeccCccceeeeeeeeeceeehhhccCCCCcchhhcceeeeeccccceeEEEecCcceEEEc
Confidence 4444445554444443222222332 234578899998865 57999999999999988755554444
No 465
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=88.94 E-value=24 Score=34.51 Aligned_cols=80 Identities=20% Similarity=0.331 Sum_probs=53.2
Q ss_pred EEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEcc------CCCEEEEEeCCCcEEEEeCCCCceEEE
Q 004214 344 VSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP------NDSLVCTGSQDRTACVWRLPDLVSVVT 417 (768)
Q Consensus 344 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~------~~~~l~~~~~dg~i~i~d~~~~~~~~~ 417 (768)
+.|..-|.|-+||.... ...+....+.-.....|+..| .+.+|+---.||+|..||..+++.+..
T Consensus 216 v~G~G~G~VdvFd~~G~---------l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~ 286 (336)
T TIGR03118 216 VAGAGLGYVNVFTLNGQ---------LLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQ 286 (336)
T ss_pred ccCCCcceEEEEcCCCc---------EEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeee
Confidence 44555678888887642 111111223334556777766 567777777899999999999998888
Q ss_pred EeccCC------CeEEEEEcc
Q 004214 418 FRGHKR------GIWSVEFSP 432 (768)
Q Consensus 418 ~~~~~~------~v~~v~~s~ 432 (768)
+....+ ..+.+.|..
T Consensus 287 L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 287 LLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred ecCCCCCeEEecCeEEeeeCC
Confidence 775433 467777765
No 466
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=88.76 E-value=30 Score=35.33 Aligned_cols=69 Identities=13% Similarity=0.069 Sum_probs=43.8
Q ss_pred cCCCeEEEEEcc-------CCCEEEEEeCCCcEEEEeCCCCceEEE----EeccCCCeEEEEEccCCCEEEEeeCCCcEE
Q 004214 379 HGKDINSLAVAP-------NDSLVCTGSQDRTACVWRLPDLVSVVT----FRGHKRGIWSVEFSPVDQVVITASGDKTIK 447 (768)
Q Consensus 379 ~~~~i~~~~~s~-------~~~~l~~~~~dg~i~i~d~~~~~~~~~----~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~ 447 (768)
+...+..+.|.+ .|.++++.-..+.|....+.....+.. +......+..+++.|||.+.++...+|.|.
T Consensus 251 ~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 251 PHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp TT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred CccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 446677777764 455666666667888888765533221 223444799999999999998888888764
No 467
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.16 E-value=7.3 Score=45.56 Aligned_cols=145 Identities=19% Similarity=0.273 Sum_probs=88.2
Q ss_pred eCCCeEEEEeCCCceEEEeeecccCcEEEEEEec--------CCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeE
Q 004214 304 SKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSK--------KLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAV 375 (768)
Q Consensus 304 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~--------~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 375 (768)
+.|+.+.+|+.+++.....+.+-...|..+..-. .-+++|+.++ --.|.++-+.......... .......
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT-~~ei~ilgV~~~~~~~~~~-~f~~~~~ 173 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVAT-PVEIVILGVSFDEFTGELS-IFNTSFK 173 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecc-cceEEEEEEEeccccCccc-cccccee
Confidence 4578899999999877777777777776665532 2233344333 3345555443221111110 0001122
Q ss_pred eeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeC----CCC---c-----------------eEEEEe-ccCCCeEEEEE
Q 004214 376 VAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRL----PDL---V-----------------SVVTFR-GHKRGIWSVEF 430 (768)
Q Consensus 376 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~----~~~---~-----------------~~~~~~-~~~~~v~~v~~ 430 (768)
....+..|+++....+|+.+++| .||. +|.+ .++ + .+..+. .+..+|..+.+
T Consensus 174 i~~dg~~V~~I~~t~nGRIF~~G-~dg~--lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~I 250 (1311)
T KOG1900|consen 174 ISVDGVSVNCITYTENGRIFFAG-RDGN--LYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITI 250 (1311)
T ss_pred eecCCceEEEEEeccCCcEEEee-cCCC--EEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEe
Confidence 23346678899977788877765 5553 4432 111 0 011222 45679999999
Q ss_pred ccCCCEEEEeeCCCcEEEEeCCC
Q 004214 431 SPVDQVVITASGDKTIKIWSISD 453 (768)
Q Consensus 431 s~~~~~l~t~~~d~~i~iwd~~~ 453 (768)
....+++.+-+..|+|.+||+..
T Consensus 251 D~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 251 DNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ccccceeeeeccCceEEEEEccC
Confidence 99999999999999999999965
No 468
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.97 E-value=11 Score=38.73 Aligned_cols=101 Identities=13% Similarity=0.201 Sum_probs=69.2
Q ss_pred ccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCce----eEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCC
Q 004214 420 GHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSC----LKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRT 495 (768)
Q Consensus 420 ~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~----~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 495 (768)
...++|.++.||+|.+.||+--.|++|.+++....+. ..+.+..+..|...+|+.+ .-++.....| +-+|-+..
T Consensus 64 ~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~p 141 (657)
T KOG2377|consen 64 DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLP 141 (657)
T ss_pred cCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEch
Confidence 3567999999999999999999999999999743322 2233344556888899876 5565555555 55665433
Q ss_pred C-eEEEEeccCCCcEEEEEEcCCCCEEE
Q 004214 496 G-ECIATYDKHEDKIWALAVGKKTEMFA 522 (768)
Q Consensus 496 ~-~~~~~~~~~~~~v~~l~~s~~~~~l~ 522 (768)
. ..++..+.|...|.-..|.++.+.+.
T Consensus 142 ekrslRlVks~~~nvnWy~yc~et~v~L 169 (657)
T KOG2377|consen 142 EKRSLRLVKSHNLNVNWYMYCPETAVIL 169 (657)
T ss_pred hhhhhhhhhhcccCccEEEEccccceEe
Confidence 2 33444456777777777888776543
No 469
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=87.91 E-value=0.075 Score=53.99 Aligned_cols=143 Identities=10% Similarity=0.119 Sum_probs=97.2
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEE-EeeCCCcEEEEeCCCCceeE-
Q 004214 381 KDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVI-TASGDKTIKIWSISDGSCLK- 458 (768)
Q Consensus 381 ~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~-t~~~d~~i~iwd~~~~~~~~- 458 (768)
.......|-|.+.-++.++.+..+..||-. ++...... ..+....++|..++..++ .+-..+.+.+||+.+.....
T Consensus 35 v~pi~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqL 112 (615)
T KOG2247|consen 35 VGPIIHRWRPEGHNLAVACANTIVIYYDKA-GQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQL 112 (615)
T ss_pred cccceeeEecCCCceehhhhhhHHHhhhhh-cceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHH
Confidence 334456777877778898988888888843 33332222 334455677877765444 45567899999996532211
Q ss_pred Eee-cCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCC
Q 004214 459 TFE-GHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDA 528 (768)
Q Consensus 459 ~~~-~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg 528 (768)
.+. .|.... +.|++.+..++.+...|.+.|++-.+...+...-.|..++++++|.+.+..+ .++.|.
T Consensus 113 E~gg~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vi-l~dcd~ 180 (615)
T KOG2247|consen 113 ESGGTSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVI-LCDCDN 180 (615)
T ss_pred hccCcchHHH--HhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceee-ecCcHH
Confidence 111 122333 7899999999999999999999988887777776699999999998877543 344333
No 470
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=87.45 E-value=31 Score=33.88 Aligned_cols=218 Identities=15% Similarity=0.202 Sum_probs=118.0
Q ss_pred eecCCCEEEEEEeCCCeEEEEeCC------Cc-eEEEeeec-----ccCcEEEEEEecCCC-----------cEEEEEeC
Q 004214 292 ALSSGKILIVTGSKDNSVRLWDSE------SR-CCVGVGTG-----HMGAVGAVAFSKKLQ-----------NFLVSGSS 348 (768)
Q Consensus 292 ~~~~~~~~l~~~~~dg~i~iwd~~------~~-~~~~~~~~-----~~~~v~~~~~~~~~~-----------~~l~s~~~ 348 (768)
+.+.+ .+-++....+...+||.. .. .++..+.. .....+.+.|+.... ..++.+++
T Consensus 30 ~~p~~-~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fif~tE 108 (336)
T TIGR03118 30 YRPGG-PFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFLFVTE 108 (336)
T ss_pred ecCCC-CEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEEEEeC
Confidence 44444 335666667888899876 11 22222221 223566677764321 23677889
Q ss_pred CCeEEEEeCCCCCCCCccccccceeeEee-ccCCC-eEEEEEcc--CCCEEEE-EeCCCcEEEEeCCCCceE--EEEecc
Q 004214 349 DHTIKVWSFDGLSDDAEQPMNLKAKAVVA-AHGKD-INSLAVAP--NDSLVCT-GSQDRTACVWRLPDLVSV--VTFRGH 421 (768)
Q Consensus 349 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~-i~~~~~s~--~~~~l~~-~~~dg~i~i~d~~~~~~~--~~~~~~ 421 (768)
||+|.-|......... . ....... ..... -..+++.. .+.+|.. --..++|.+||-.=.+.. ..+...
T Consensus 109 dGTisaW~p~v~~t~~----~-~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP 183 (336)
T TIGR03118 109 DGTLSGWAPALGTTRM----T-RAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDP 183 (336)
T ss_pred CceEEeecCcCCcccc----c-ccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCC
Confidence 9999999854221100 0 0111111 11122 23455543 2444444 446788999985322111 001100
Q ss_pred -----CC-----------CeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEee--cCCCcEEEEEEEe------CCC
Q 004214 422 -----KR-----------GIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFE--GHTSSVLRASFLT------RGA 477 (768)
Q Consensus 422 -----~~-----------~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~--~~~~~v~~~~~s~------~~~ 477 (768)
-. .|+-..-.++.+.=+.|..-|.|-+||+ +|..++++. +.-...+.++..| .|.
T Consensus 184 ~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~ 262 (336)
T TIGR03118 184 ALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFGSLSGA 262 (336)
T ss_pred CCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhCCCCCC
Confidence 00 0111111222222233445588999997 688888885 2334456677655 356
Q ss_pred EEEEEeCCCcEEEEECCCCeEEEEeccCCC------cEEEEEEcC
Q 004214 478 QIVSCGADGLVKLWTVRTGECIATYDKHED------KIWALAVGK 516 (768)
Q Consensus 478 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~------~v~~l~~s~ 516 (768)
+|+---.||+|..||..+|+.+..+....+ .+|.|.|..
T Consensus 263 lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 263 LLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred eEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 676666799999999999998888765443 468888875
No 471
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=87.28 E-value=63 Score=37.34 Aligned_cols=68 Identities=24% Similarity=0.253 Sum_probs=51.1
Q ss_pred CCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEe----e-----------c----CCCcEEEEEEEeCCCEEEEE
Q 004214 422 KRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTF----E-----------G----HTSSVLRASFLTRGAQIVSC 482 (768)
Q Consensus 422 ~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~----~-----------~----~~~~v~~~~~s~~~~~l~s~ 482 (768)
...|.+++...-+.+++.+..||+|.++|-.+.+.+... . | +-.++..++|||.+.-++.-
T Consensus 259 ~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~ 338 (753)
T PF11635_consen 259 NKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQI 338 (753)
T ss_pred CCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEE
Confidence 356778888888889999999999999998776554433 1 1 11234458899999999999
Q ss_pred eCCCcEE
Q 004214 483 GADGLVK 489 (768)
Q Consensus 483 ~~dg~i~ 489 (768)
..+|.+.
T Consensus 339 ~~~~~~~ 345 (753)
T PF11635_consen 339 DEDGKTK 345 (753)
T ss_pred ecCCCce
Confidence 9998865
No 472
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=86.80 E-value=41 Score=34.66 Aligned_cols=42 Identities=10% Similarity=0.241 Sum_probs=20.5
Q ss_pred cEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCC
Q 004214 487 LVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDA 528 (768)
Q Consensus 487 ~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg 528 (768)
.+.+||..+.+-...-.-....-...+..-+++.++.||.+.
T Consensus 291 ~~e~yd~~~~~W~~~~~lp~~~~~~~~~~~~~~iyv~GG~~~ 332 (346)
T TIGR03547 291 SSEVYALDNGKWSKVGKLPQGLAYGVSVSWNNGVLLIGGENS 332 (346)
T ss_pred EeeEEEecCCcccccCCCCCCceeeEEEEcCCEEEEEeccCC
Confidence 466888776543221111111112223344777788887653
No 473
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=86.76 E-value=2.9 Score=26.94 Aligned_cols=40 Identities=20% Similarity=0.222 Sum_probs=29.6
Q ss_pred CCCCEEEEEe-CCCeEEEEECCCCeeeeeeecceeEeeEEe
Q 004214 84 SDGSTLISAG-RDKVVNLWDLRDYSCKLTVPTYEMVEAVCA 123 (768)
Q Consensus 84 ~d~~~L~s~~-~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~ 123 (768)
|++++|+++. .++.|.++|..+++.+..++.......+++
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 6778777655 578999999999998888876554444443
No 474
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=86.14 E-value=35 Score=33.19 Aligned_cols=222 Identities=14% Similarity=0.059 Sum_probs=107.9
Q ss_pred CCCEEEEEeCCCcEEEEECCCceee---eeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCce---EEEeee
Q 004214 251 EEQYLAVATNIEQVQVYDLSSMSCS---YVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC---CVGVGT 324 (768)
Q Consensus 251 ~~~~l~~~~~~~~i~i~d~~~~~~~---~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~ 324 (768)
.+++..++.-+.-+.++|+.+.+.. ..+.........+. -.|+. ...+..|+-+.+.|+.... .+....
T Consensus 137 sGn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~~v~----ISGn~-AYvA~~d~GL~ivDVSnp~sPvli~~~n 211 (370)
T COG5276 137 SGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHDVA----ISGNY-AYVAWRDGGLTIVDVSNPHSPVLIGSYN 211 (370)
T ss_pred cCCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCceeEE----EecCe-EEEEEeCCCeEEEEccCCCCCeEEEEEe
Confidence 3456666665566666676554322 12222222212221 22443 5566678888899887542 222221
Q ss_pred cccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEE-EEccCCCEEEEEeCCCc
Q 004214 325 GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSL-AVAPNDSLVCTGSQDRT 403 (768)
Q Consensus 325 ~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~s~~~~~l~~~~~dg~ 403 (768)
....+.++..+++ ..+++ -.+--+.+-|....... ..... . ....+.++ .+.-.+++...+..+.-
T Consensus 212 -~g~g~~sv~vsdn-r~y~v--vy~egvlivd~s~~ssp-------~~~gs-y-et~~p~~~s~v~Vs~~~~Yvadga~g 278 (370)
T COG5276 212 -TGPGTYSVSVSDN-RAYLV--VYDEGVLIVDVSGPSSP-------TVFGS-Y-ETSNPVSISTVPVSGEYAYVADGAKG 278 (370)
T ss_pred -cCCceEEEEecCC-eeEEE--EcccceEEEecCCCCCc-------eEeec-c-ccCCcccccceecccceeeeeccccC
Confidence 2236777777776 32333 33334566666543210 01111 1 11112222 23334666666666666
Q ss_pred EEEEeCCCCce---EEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEE
Q 004214 404 ACVWRLPDLVS---VVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIV 480 (768)
Q Consensus 404 i~i~d~~~~~~---~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 480 (768)
+.+-|+.+... ...+......-..+..+ +.++..+..+ +..+-+....+......+....+.+...+-+.+.+.
T Consensus 279 l~~idisnp~spfl~ss~~t~g~~a~gi~ay--~~y~yiadkn-~g~vV~~s~~s~m~~~~g~~ti~~s~~v~~~~q~~y 355 (370)
T COG5276 279 LPIIDISNPPSPFLSSSLDTAGYQAAGIRAY--GNYNYIADKN-TGAVVDASPPSMMDKRPGRPTIGQSCDVSVDTQIIY 355 (370)
T ss_pred ceeEeccCCCCCchhccccCCCccccceEEe--cCeeEeccCC-ceEEEeCCChhhcccccCcceEeeecceEEEeeEEE
Confidence 66766654321 11111111122223322 4555555544 455556554444444444444445555555666888
Q ss_pred EEeCCCcEEEEEC
Q 004214 481 SCGADGLVKLWTV 493 (768)
Q Consensus 481 s~~~dg~i~iwd~ 493 (768)
+...++-+.||+.
T Consensus 356 ~~d~~~gl~i~~~ 368 (370)
T COG5276 356 STDYNGGLSIIEY 368 (370)
T ss_pred EeecCCCEEEEEe
Confidence 8888888888875
No 475
>KOG3380 consensus Actin-related protein Arp2/3 complex, subunit ARPC5 [Cytoskeleton]
Probab=85.78 E-value=9.7 Score=32.36 Aligned_cols=91 Identities=19% Similarity=0.173 Sum_probs=64.8
Q ss_pred hhhHHHHhhcccchHHHHHHHhhcCCch--------hHHHHHHHHHhchhhHHHHHHHHhhcCHHHHHHHHHHHHHHhcC
Q 004214 554 RGQELENAVLDADYTKAIQVAFELRRPH--------KLFELFASVCRKREAELQIEKALHALGKEEIRQLLEYVREWNTK 625 (768)
Q Consensus 554 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~ 625 (768)
...+++.++..++...|+..++....+. +-+.++..++.. .+...|+.++..|+.++...|++||-+=+..
T Consensus 38 ~~~ev~sll~qg~~~~AL~~aL~~~P~~t~~q~vK~~a~~~v~~vL~~-ik~adI~~~v~~Ls~e~~DiLmKYiYkGm~~ 116 (152)
T KOG3380|consen 38 DEREVRSLLTQGKSLEALQTALLNPPYGTKDQEVKDRALNVVLKVLTS-IKQADIEAAVKKLSTEEIDILMKYIYKGMEI 116 (152)
T ss_pred ChHHHHHHHHcccHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHhhHHHHHHHHHHHHHHhcC
Confidence 4568889999999999999998754322 112222222221 1233799999999999999999999887876
Q ss_pred C---CchHHHHHHHHHHhccCCc
Q 004214 626 P---KLCHVAQFVLFQLFNIHPP 645 (768)
Q Consensus 626 ~---~~~~~~~~~l~~~l~~~~~ 645 (768)
| ..+..++.|...++...|.
T Consensus 117 p~d~~s~~~LL~WHEk~~~~~Gv 139 (152)
T KOG3380|consen 117 PSDNSSCVSLLQWHEKLVAKSGV 139 (152)
T ss_pred ccccchHHHHHHHHHHHHHhcCC
Confidence 4 4566677888877777654
No 476
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.63 E-value=9.8 Score=44.58 Aligned_cols=136 Identities=16% Similarity=0.257 Sum_probs=88.5
Q ss_pred eCCCcEEEEeCCCCceEEEEeccCCCeEEEEE--------ccCCCEEEEeeCCCcEEEEeCCCCce---e------EEee
Q 004214 399 SQDRTACVWRLPDLVSVVTFRGHKRGIWSVEF--------SPVDQVVITASGDKTIKIWSISDGSC---L------KTFE 461 (768)
Q Consensus 399 ~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~--------s~~~~~l~t~~~d~~i~iwd~~~~~~---~------~~~~ 461 (768)
+-|..+.+|+.+++.....+.+-...|..|.. -|.=++++.-+.--.|.++-+...+. . .++.
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 45788999999998777777776666666543 33334444444446677776533221 1 2222
Q ss_pred cCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECC----CC---e-E----------------EEEec-cCCCcEEEEEEcC
Q 004214 462 GHTSSVLRASFLTRGAQIVSCGADGLVKLWTVR----TG---E-C----------------IATYD-KHEDKIWALAVGK 516 (768)
Q Consensus 462 ~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~----~~---~-~----------------~~~~~-~~~~~v~~l~~s~ 516 (768)
.....|+++....+|+.+++|- || .+|.+. +| + | +..+. .+.++|..+.+..
T Consensus 176 ~dg~~V~~I~~t~nGRIF~~G~-dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~ 252 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGRIFFAGR-DG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN 252 (1311)
T ss_pred cCCceEEEEEeccCCcEEEeec-CC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc
Confidence 3355788888777887666554 55 444431 11 1 1 11222 4677999999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCC
Q 004214 517 KTEMFATGGSDALVNLWHDST 537 (768)
Q Consensus 517 ~~~~l~s~~~dg~v~vw~~~~ 537 (768)
....+.+-++.|+|.+|++..
T Consensus 253 SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 253 SRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ccceeeeeccCceEEEEEccC
Confidence 999999999999999999987
No 477
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=85.32 E-value=9.1 Score=42.50 Aligned_cols=72 Identities=22% Similarity=0.277 Sum_probs=46.2
Q ss_pred cCCCEEEEEeCCCcEEEEeCCC----CceEEEE--ec--------------------cCCCeEEEEEcc----CCCEEEE
Q 004214 390 PNDSLVCTGSQDRTACVWRLPD----LVSVVTF--RG--------------------HKRGIWSVEFSP----VDQVVIT 439 (768)
Q Consensus 390 ~~~~~l~~~~~dg~i~i~d~~~----~~~~~~~--~~--------------------~~~~v~~v~~s~----~~~~l~t 439 (768)
++...++++..||.+....... +...... .. ....+.++++++ +..+|++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 4677888889999888887654 2111111 10 113455666666 6789999
Q ss_pred eeCCCcEEEEeCCCCceeEEee
Q 004214 440 ASGDKTIKIWSISDGSCLKTFE 461 (768)
Q Consensus 440 ~~~d~~i~iwd~~~~~~~~~~~ 461 (768)
.+.|+++|+||+.+++++.+..
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEec
Confidence 9999999999999999976653
No 478
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=85.04 E-value=16 Score=35.91 Aligned_cols=115 Identities=18% Similarity=0.299 Sum_probs=72.5
Q ss_pred CCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEe------CCCcEEEEECCCCeeEEEecC-----cccee
Q 004214 9 DRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGS------DDATVRVWDLLAKKCVATLDK-----HFSRV 77 (768)
Q Consensus 9 dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~------~dg~I~iWd~~~~~~~~~l~~-----h~~~V 77 (768)
-..|++||..+.+-..--.+-.+.|++|.|..+.+ +++.|. ....+..||+.+..- ..+.+ -.++|
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~--Llv~G~ft~~~~~~~~la~yd~~~~~w-~~~~~~~s~~ipgpv 91 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQ--LLVGGNFTLNGTNSSNLATYDFKNQTW-SSLGGGSSNSIPGPV 91 (281)
T ss_pred CCEEEEEECCCCEeecCCCCceEEEEEEEEecCCE--EEEEEeeEECCCCceeEEEEecCCCee-eecCCcccccCCCcE
Confidence 56799999998886655556778999999985433 366663 456789999877653 23333 24778
Q ss_pred EEEEEcC-CCCEEEEEe----CCCeEEEEECCCCeeeee--eecceeEeeEEecCC
Q 004214 78 TSMAITS-DGSTLISAG----RDKVVNLWDLRDYSCKLT--VPTYEMVEAVCAIPP 126 (768)
Q Consensus 78 ~~l~fs~-d~~~L~s~~----~dg~i~vWd~~~~~~~~~--~~~~~~v~~~~~~~~ 126 (768)
+.+.+.. |+..+..+| .+..|..||=.....+.. +.....+..+.+.+-
T Consensus 92 ~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~~~l 147 (281)
T PF12768_consen 92 TALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQVLPL 147 (281)
T ss_pred EEEEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEEEec
Confidence 8888743 444444333 234677787666655544 222334555555443
No 479
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=84.41 E-value=5.8 Score=35.99 Aligned_cols=31 Identities=13% Similarity=0.114 Sum_probs=25.8
Q ss_pred CcEEEEEEcCCC------CEEEEEeCCCcEEEEEcCC
Q 004214 507 DKIWALAVGKKT------EMFATGGSDALVNLWHDST 537 (768)
Q Consensus 507 ~~v~~l~~s~~~------~~l~s~~~dg~v~vw~~~~ 537 (768)
..+.+++|||.| .+|++...+|.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 478899999954 3788999999999998764
No 480
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=84.40 E-value=39 Score=35.98 Aligned_cols=31 Identities=10% Similarity=0.359 Sum_probs=24.9
Q ss_pred CcEEEEEEEeCCCEEEEEeCCCcEEEEECCC
Q 004214 465 SSVLRASFLTRGAQIVSCGADGLVKLWTVRT 495 (768)
Q Consensus 465 ~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 495 (768)
..|.+++..+..+.|++...+|.|.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 3488899988889999999999999999974
No 481
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=84.03 E-value=4.8 Score=25.91 Aligned_cols=40 Identities=20% Similarity=0.238 Sum_probs=28.3
Q ss_pred eCCCEEEEEe-CCCcEEEEECCCCeEEEEeccCCCcEEEEEE
Q 004214 474 TRGAQIVSCG-ADGLVKLWTVRTGECIATYDKHEDKIWALAV 514 (768)
Q Consensus 474 ~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~ 514 (768)
|++++|+++. .++.|.++|..+++.+..+.. ......++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v-g~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV-GGYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC-CCCCceEEe
Confidence 5677776655 478999999999998888765 333344544
No 482
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=83.96 E-value=15 Score=37.59 Aligned_cols=164 Identities=11% Similarity=0.083 Sum_probs=88.0
Q ss_pred CcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCC----CeE-EEEEccCCCEEEEEeCCC
Q 004214 328 GAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGK----DIN-SLAVAPNDSLVCTGSQDR 402 (768)
Q Consensus 328 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~----~i~-~~~~s~~~~~l~~~~~dg 402 (768)
..+..+-..|+|+. +..-+. ..+.++++........ .......+ .|+ ++..-..|.-+.+++.||
T Consensus 221 ~~v~qllL~Pdg~~-LYv~~g-~~~~v~~L~~r~l~~r--------kl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG 290 (733)
T COG4590 221 SDVSQLLLTPDGKT-LYVRTG-SELVVALLDKRSLQIR--------KLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDG 290 (733)
T ss_pred cchHhhEECCCCCE-EEEecC-CeEEEEeecccccchh--------hhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCC
Confidence 45667778888774 444333 5677887764321111 00000011 111 111223456678888899
Q ss_pred cEEEE-eCCCC-c----eEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCC
Q 004214 403 TACVW-RLPDL-V----SVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRG 476 (768)
Q Consensus 403 ~i~i~-d~~~~-~----~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~ 476 (768)
.|.-| |.+.. . .++.++-...++..+.-..+.+-+++-+..|++.++.....+.+- ++.-...+.-+.+||++
T Consensus 291 ~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL-~~~~~~~~~~~~~Sp~~ 369 (733)
T COG4590 291 LVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLL-FERAYQAPQLVAMSPNQ 369 (733)
T ss_pred ceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCccee-hhhhhcCcceeeeCccc
Confidence 88877 44322 1 111222122333333323334567777778888877654333322 22222355568999999
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEec
Q 004214 477 AQIVSCGADGLVKLWTVRTGECIATYD 503 (768)
Q Consensus 477 ~~l~s~~~dg~i~iwd~~~~~~~~~~~ 503 (768)
.+|++-. .|.++++.+++..+--++.
T Consensus 370 ~~Ll~e~-~gki~~~~l~Nr~Peisws 395 (733)
T COG4590 370 AYLLSED-QGKIRLAQLENRNPEISWS 395 (733)
T ss_pred chheeec-CCceEEEEecCCCCCccHH
Confidence 9998754 4679999887765544443
No 483
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.87 E-value=43 Score=39.83 Aligned_cols=72 Identities=15% Similarity=0.188 Sum_probs=42.3
Q ss_pred cCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeE
Q 004214 421 HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGEC 498 (768)
Q Consensus 421 ~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 498 (768)
+..++.+..+......+... .-+.+-+|+.........+... ....++++..++++..||.+..||...+..
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 197 IEYESLQVLYYSPTKILIGF-NRGLVVIKDRASKYVQSAYLPN-----GQLESRDGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred cccccceeeeecCCCcceee-eeeeeeehhcccccchhhcccc-----cccCccCCceEEEEEecCCEEeeecCCCce
Confidence 44555555555444444333 3366666665443333333211 111277888999999999999999888754
No 484
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=83.51 E-value=68 Score=34.40 Aligned_cols=71 Identities=15% Similarity=0.266 Sum_probs=50.1
Q ss_pred CCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCcc-ceeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004214 29 HKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHF-SRVTSMAITSDGSTLISAGRDKVVNLWDLRD 105 (768)
Q Consensus 29 h~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~-~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~~ 105 (768)
-...|.++.+...|. +..|+.|| +..+|..+++.++.-.... .+|..+..+-.| .|..++.+| |.+.+.+.
T Consensus 163 ~d~~V~aLv~D~~g~---lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg-~LWVGTdqG-v~~~e~~G 234 (671)
T COG3292 163 KDTPVVALVFDANGR---LWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQG-RLWVGTDQG-VYLQEAEG 234 (671)
T ss_pred cCccceeeeeeccCc---EEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcC-cEEEEeccc-eEEEchhh
Confidence 356788888888765 78889999 7778888888877655444 567666666555 566677666 66666554
No 485
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=83.39 E-value=72 Score=34.57 Aligned_cols=117 Identities=15% Similarity=0.105 Sum_probs=62.4
Q ss_pred EEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCC---eEEEEEccCCCEEEEeeC-------------CCcEEEE
Q 004214 386 LAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRG---IWSVEFSPVDQVVITASG-------------DKTIKIW 449 (768)
Q Consensus 386 ~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~---v~~v~~s~~~~~l~t~~~-------------d~~i~iw 449 (768)
+..-++|.+++... ..+..+|+. |+.+......... =..+..-|+|++|+.+.. .-.|..+
T Consensus 153 ~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivev 229 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEV 229 (477)
T ss_dssp EEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE
T ss_pred eeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEE
Confidence 56678888887665 778888874 5554444322211 246778899999888771 1225555
Q ss_pred eCCCCceeEEee--cCC-------------------------CcEEEEEEEe-CCCEEEEEeCCCcEEEEECCCCeEEEE
Q 004214 450 SISDGSCLKTFE--GHT-------------------------SSVLRASFLT-RGAQIVSCGADGLVKLWTVRTGECIAT 501 (768)
Q Consensus 450 d~~~~~~~~~~~--~~~-------------------------~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~ 501 (768)
| .+|+.+..+. .|- -.+.++.+.+ ++..++|+-.-..|...|.++++....
T Consensus 230 d-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wi 308 (477)
T PF05935_consen 230 D-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWI 308 (477)
T ss_dssp --TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEE
T ss_pred C-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEE
Confidence 6 6666655432 010 2478889988 444555544445788889889988887
Q ss_pred eccCC
Q 004214 502 YDKHE 506 (768)
Q Consensus 502 ~~~~~ 506 (768)
+..|.
T Consensus 309 lg~~~ 313 (477)
T PF05935_consen 309 LGPPG 313 (477)
T ss_dssp ES-ST
T ss_pred eCCCC
Confidence 76543
No 486
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=82.92 E-value=6.6 Score=40.08 Aligned_cols=172 Identities=11% Similarity=0.020 Sum_probs=93.7
Q ss_pred eeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEe--eecccC----cEE-EEEEecCCCcEEEEEeCC
Q 004214 277 VLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGV--GTGHMG----AVG-AVAFSKKLQNFLVSGSSD 349 (768)
Q Consensus 277 ~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~----~v~-~~~~~~~~~~~l~s~~~d 349 (768)
.+......+..+- ..|+++. +..-+. ..+.++++.+...... .....+ .|+ ++..-. |..-+.+++.|
T Consensus 215 ~L~~~~~~v~qll--L~Pdg~~-LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~-Gg~SLLv~~~d 289 (733)
T COG4590 215 LLSVPFSDVSQLL--LTPDGKT-LYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLS-GGFSLLVVHED 289 (733)
T ss_pred hcCCCccchHhhE--ECCCCCE-EEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHh-CceeEEEEcCC
Confidence 3444455555553 5566665 444333 6778887765432111 111111 111 111112 23347778888
Q ss_pred CeEEEE-eCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEE
Q 004214 350 HTIKVW-SFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSV 428 (768)
Q Consensus 350 g~i~iw-d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v 428 (768)
|.|.-| |++.... + .......+.-...++..+.-..+.+-+++-+..|++.++.....+.+.. ..-...+.-+
T Consensus 290 G~vsQWFdvr~~~~-p----~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~-~~~~~~~~~~ 363 (733)
T COG4590 290 GLVSQWFDVRRDGQ-P----HLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLF-ERAYQAPQLV 363 (733)
T ss_pred CceeeeeeeecCCC-C----cceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceeh-hhhhcCccee
Confidence 888877 4443221 1 1122222222334444444444566778888888888887655444332 2223366778
Q ss_pred EEccCCCEEEEeeCCCcEEEEeCCCCceeEEe
Q 004214 429 EFSPVDQVVITASGDKTIKIWSISDGSCLKTF 460 (768)
Q Consensus 429 ~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~ 460 (768)
++||++.++++-.. |.|+++.+++..+--++
T Consensus 364 ~~Sp~~~~Ll~e~~-gki~~~~l~Nr~Peisw 394 (733)
T COG4590 364 AMSPNQAYLLSEDQ-GKIRLAQLENRNPEISW 394 (733)
T ss_pred eeCcccchheeecC-CceEEEEecCCCCCccH
Confidence 99999999988655 78999998766544333
No 487
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=82.62 E-value=1e+02 Score=35.83 Aligned_cols=206 Identities=10% Similarity=0.004 Sum_probs=98.3
Q ss_pred ccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeec-ccCCceeEEEEecCCCCEEEEEeCCCcEEEEECC---Cc--
Q 004214 199 LPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLV-GYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLS---SM-- 272 (768)
Q Consensus 199 ~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~---~~-- 272 (768)
.+....++..+.+|.++.............-.-..... ...+.+..+ +.......++..++.|.+...... ..
T Consensus 493 i~~e~~~vllS~~GyIKri~~~~~~~~~~~~~g~s~~klKe~D~l~~~-~~~~t~d~LllfTs~Grv~~l~~~~IP~~~r 571 (800)
T TIGR01063 493 IARENVVVTLSHNGYVKRVPVSAYRLQKRGGKGVSGADMKDDDFIEQL-LVASTHDYLLFFTNRGKVYWLKVYQIPEASR 571 (800)
T ss_pred cCcceEEEEEcCCCEEEecchhhhhhhcccCcCccccccCCCCeeEEE-EEecCCCeEEEEeCCCcEEEEEhhhCcCCCc
Confidence 44556678899999988776553321000000000000 012222222 233455667777777887776542 21
Q ss_pred ----eee---eeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceE-------EEeeecccCcEEEEEEecC
Q 004214 273 ----SCS---YVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC-------VGVGTGHMGAVGAVAFSKK 338 (768)
Q Consensus 273 ----~~~---~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-------~~~~~~~~~~v~~~~~~~~ 338 (768)
..+ ..+......+.++...-..++. .++..+.+|.++-.++..-.. ...+.. .+.+..+.....
T Consensus 572 ~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~-~lvliT~~GyiKRi~l~~~~~~~r~G~~aiklke-~D~lv~v~~~~~ 649 (800)
T TIGR01063 572 TAKGKPIVNLLPLQPDERITAILSVKEFDDGL-YLFFATKNGVVKKTSLTEFSNIRSNGIIAIKLDD-GDELISVRLTSG 649 (800)
T ss_pred CCCCcCHHHhccCCCCCeEEEEEEeccCCCCC-EEEEEeCCCEEEEEEhHHhhhhccCCcccccCCC-CCEEEEEEEeCC
Confidence 111 1122223333333211123344 488889999999887643211 111222 233434333333
Q ss_pred CCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 004214 339 LQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLP 410 (768)
Q Consensus 339 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~ 410 (768)
.. .++..+..|.+..+............ ..... .....+..|.++..-.++..++..+..|.++...+.
T Consensus 650 ~d-~lll~Ts~Gr~~r~~v~eIp~~gr~~-~Gv~~-i~L~~~E~Vv~~~~v~~~~~ll~vT~~G~~Kr~~l~ 718 (800)
T TIGR01063 650 DD-EVMLGSKNGKAVRFPEEDVRPMGRAA-RGVRG-IKLKNEDFVVSLLVVSEESYLLIVTENGYGKRTSIE 718 (800)
T ss_pred CC-EEEEEECCCcEEEEEhhhcCCcCCCC-CCeec-ccCCCCCEEEEEEEeccccEEEEEecCCcEEEEEHH
Confidence 23 46667777776666554321111000 00000 111223345555444455578888899988888754
No 488
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=82.38 E-value=82 Score=34.52 Aligned_cols=260 Identities=15% Similarity=0.121 Sum_probs=119.3
Q ss_pred ccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeeccc-CCceeEEEEecCCCCEEEEEeCCCcEEE--EECCCceee
Q 004214 199 LPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGY-NEEILDLKFLGEEEQYLAVATNIEQVQV--YDLSSMSCS 275 (768)
Q Consensus 199 ~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~l~~~~~~~~i~i--~d~~~~~~~ 275 (768)
..++..++.+..+|.++...+..... .......+. .....++.+...++.++.+|+..|.=.+ |.....+.+
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~-----~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~ 293 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGG-----SISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVL 293 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEE-----EEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEE
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCC-----eEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEE
Confidence 45567789999999999888765432 122223333 5556777777555558888887655444 443333444
Q ss_pred eeeeCCccceEEEeeeee-cCCCE------EEEEEe---CCCeEEEEeCCCceE--EEeeecc--cCcEEEEEEecCCCc
Q 004214 276 YVLAGHSEIVLCLDTCAL-SSGKI------LIVTGS---KDNSVRLWDSESRCC--VGVGTGH--MGAVGAVAFSKKLQN 341 (768)
Q Consensus 276 ~~~~~~~~~v~~l~~~~~-~~~~~------~l~~~~---~dg~i~iwd~~~~~~--~~~~~~~--~~~v~~~~~~~~~~~ 341 (768)
..+.. -+++..+...-. ..+.. .+++++ .+|.+++..-.-+-. ......- ...++.+........
T Consensus 294 ~~~~N-~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~ 372 (504)
T PF10433_consen 294 DSLPN-WGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPGVTGIWTLKLSSSDHS 372 (504)
T ss_dssp EEE-----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEESTEEEEEEE-SSSSSBS
T ss_pred EeccC-cCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCCceEEEEeeecCCCce
Confidence 44443 355666553211 11121 244443 567888875322211 1111111 234445544432244
Q ss_pred EEEEEeCCCeEEEEeCCCCCCCCccccccceee--EeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEe
Q 004214 342 FLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKA--VVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFR 419 (768)
Q Consensus 342 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 419 (768)
+++.+..+.+ +++.+....... ...... .+......+.+-.+. +..++=.+.. .|++.+....+......
T Consensus 373 ~lv~S~~~~T-~vl~~~~~d~~e----~~~e~~~~~f~~~~~Tl~~~~~~--~~~ivQVt~~-~i~l~~~~~~~~~~~w~ 444 (504)
T PF10433_consen 373 YLVLSFPNET-RVLQISEGDDGE----EVEEVEEDGFDTDEPTLAAGNVG--DGRIVQVTPK-GIRLIDLEDGKLTQEWK 444 (504)
T ss_dssp EEEEEESSEE-EEEEES----SS----EEEEE---TS-SSS-EEEEEEET--TTEEEEEESS-EEEEEESSSTSEEEEEE
T ss_pred EEEEEcCCce-EEEEEecccCCc----chhhhhhccCCCCCCCeEEEEcC--CCeEEEEecC-eEEEEECCCCeEEEEEe
Confidence 6666655544 455553100000 000000 001111112222222 4444444443 48888877776666543
Q ss_pred c-cCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEee-----cCCCcEEEEEEEe
Q 004214 420 G-HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFE-----GHTSSVLRASFLT 474 (768)
Q Consensus 420 ~-~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~-----~~~~~v~~~~~s~ 474 (768)
. ....|.+.+.. +..++.+..++.+..+.+.......... .....|.|+...|
T Consensus 445 ~~~~~~I~~a~~~--~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 445 PPAGSIIVAASIN--DPQVLVALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP 503 (504)
T ss_dssp -TTS---SEEEES--SSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred CCCCCeEEEEEEC--CCEEEEEEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
Confidence 3 34456565555 4566666667889999887766543322 1456777776655
No 489
>PLN02193 nitrile-specifier protein
Probab=82.37 E-value=78 Score=34.26 Aligned_cols=135 Identities=11% Similarity=0.067 Sum_probs=64.7
Q ss_pred CCCEEEEEeCCC-----cEEEEeCCCCceEE--EEe--ccCCCeEEEEEccCCCEEEEeeCCC-----cEEEEeCCCCce
Q 004214 391 NDSLVCTGSQDR-----TACVWRLPDLVSVV--TFR--GHKRGIWSVEFSPVDQVVITASGDK-----TIKIWSISDGSC 456 (768)
Q Consensus 391 ~~~~l~~~~~dg-----~i~i~d~~~~~~~~--~~~--~~~~~v~~v~~s~~~~~l~t~~~d~-----~i~iwd~~~~~~ 456 (768)
++.+++.|+.++ .+..||+.+.+-.. .+. .....-.+++. -++++.+.|+.++ .+..||+.+.+-
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W 306 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKKW 306 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCEE
Confidence 566777777653 57888887653221 110 01111112222 2466667776543 467788766432
Q ss_pred eEEeec----CCCcEEEEEEEeCCCEEEEEeCC----CcEEEEECCCCeEEEEecc---CCCcEEEEEEcCCCCEEEEEe
Q 004214 457 LKTFEG----HTSSVLRASFLTRGAQIVSCGAD----GLVKLWTVRTGECIATYDK---HEDKIWALAVGKKTEMFATGG 525 (768)
Q Consensus 457 ~~~~~~----~~~~v~~~~~s~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~---~~~~v~~l~~s~~~~~l~s~~ 525 (768)
.. +.. ...........-+++..+.++.+ ..+.+||+.+.+....-.. +......-+..-+++.++.||
T Consensus 307 ~~-~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG 385 (470)
T PLN02193 307 FH-CSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGG 385 (470)
T ss_pred Ee-CCCCCCCCCCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECC
Confidence 11 110 00000011122356777777655 3589999988764332110 111111112223567777777
Q ss_pred CC
Q 004214 526 SD 527 (768)
Q Consensus 526 ~d 527 (768)
.+
T Consensus 386 ~~ 387 (470)
T PLN02193 386 EI 387 (470)
T ss_pred cc
Confidence 53
No 490
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.90 E-value=33 Score=36.14 Aligned_cols=74 Identities=18% Similarity=0.224 Sum_probs=45.4
Q ss_pred CeEEEEEccCCCEEEEEeCCCcEEEEeC---------CCCceEEEEec-----------cCCCeEEEEEccCC---CEEE
Q 004214 382 DINSLAVAPNDSLVCTGSQDRTACVWRL---------PDLVSVVTFRG-----------HKRGIWSVEFSPVD---QVVI 438 (768)
Q Consensus 382 ~i~~~~~s~~~~~l~~~~~dg~i~i~d~---------~~~~~~~~~~~-----------~~~~v~~v~~s~~~---~~l~ 438 (768)
.|..+..++.|..++.++.+|.+..+=. ++++.....+. ..-.+..++|+|+. ..|.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 4677888999999999999986555431 23332221110 11134456777764 5666
Q ss_pred EeeCCCcEEEEeCCCCc
Q 004214 439 TASGDKTIKIWSISDGS 455 (768)
Q Consensus 439 t~~~d~~i~iwd~~~~~ 455 (768)
.-+.|..||+||+...+
T Consensus 185 iL~sdnviRiy~lS~~t 201 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEPT 201 (741)
T ss_pred EEecCcEEEEEecCCcc
Confidence 66677888888876544
No 491
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.87 E-value=1e+02 Score=35.76 Aligned_cols=269 Identities=15% Similarity=0.043 Sum_probs=0.0
Q ss_pred CCceEEEEecCeEEEEeeccCcccceeeE----EEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeee
Q 004214 202 NQGLLCVTADQQLLLYTTVEVPEKKMELI----LSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYV 277 (768)
Q Consensus 202 ~~~l~~~~~dg~i~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~ 277 (768)
++.+++|+.+|.+..|.+........... ......-...+|..+... ...-++..-.++.+.++++.+.+....
T Consensus 26 ~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~~~~kk~i~~l~~~--~~~~~ll~l~dsqi~~~~l~~~~~~~~ 103 (877)
T KOG2063|consen 26 GNHLYVGTRDGDLYLYSIYERGNPESVELVTETVKFEKEFSKKPINKLLVC--ASLELLLILSDSQIAVHKLPELEPVPS 103 (877)
T ss_pred CCEEEEEcCCCcEEEEeccccccccchhhhcchhHHhhhhccchhHHHhhc--chhcchheecCCcceeeecCccccccc
Q ss_pred eeCCccceEEEeeeeecCCC----EEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEE
Q 004214 278 LAGHSEIVLCLDTCALSSGK----ILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIK 353 (768)
Q Consensus 278 ~~~~~~~v~~l~~~~~~~~~----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~ 353 (768)
...-.+...-........++ .+.+....-.....|+-+.+.....--+-.....+++|.-. .++++-.+....
T Consensus 104 ~~~~Kg~~~f~~~~~~~s~~~~~~~i~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~---~~c~~~~~~~~i 180 (877)
T KOG2063|consen 104 GTRLKGASLFTIDLRPISTGPSVYEICLSVRKRLIRFFWNGRDGIVLVKELGFPDVPKARAWCGH---IVCLGLKKSYYI 180 (877)
T ss_pred ccccccceeeccccccccCCcceEEEEeeccceEEEEEecCCCceEEEEecccccchhhhcccce---eEEEeecceeEE
Q ss_pred EEeCCCCCCCCccccccceeeEeecc-CCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCc-eEEEEeccCCCeEEEEEc
Q 004214 354 VWSFDGLSDDAEQPMNLKAKAVVAAH-GKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLV-SVVTFRGHKRGIWSVEFS 431 (768)
Q Consensus 354 iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~v~~v~~s 431 (768)
+|.-..+ ........... ...-..+.--+++..++.| .|+...+-|..... ...++.-...+..-+.-+
T Consensus 181 i~~~~~~--------~~~~~~~s~~~~~s~~P~I~~l~~~~~ll~~-kd~~gv~vd~~G~~~~~~~l~ws~~P~~v~~~~ 251 (877)
T KOG2063|consen 181 INNTSKG--------VGPNLFPSSMDNESRKPLIKSLSDQSELLLG-KDNIGVVVDLNGIIAQRGTLVWSEVPLSVVVES 251 (877)
T ss_pred EecCCCc--------cccceeeeccccccCCCeEEEecCCceEEEc-cCceEEEEecCCcccCCCceEecccchhhcccC
Q ss_pred cCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEE
Q 004214 432 PVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKL 490 (768)
Q Consensus 432 ~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~i 490 (768)
| .+.|-.++.|.||+..++.+++++. .-.-..--++.+.+.+++.+..+...+
T Consensus 252 P----YlIa~~~~~veI~s~~~~qlvQSI~--~~~~~~~l~s~~~~i~~~~~~s~v~~L 304 (877)
T KOG2063|consen 252 P----YLIALLDRSVEIRSKLDGQLVQSIT--PLSNGRSLLSAHNGIIFVASLSNVWIL 304 (877)
T ss_pred c----eEEEEccccEEEEeccCHHHhhccc--cccccceeeecCCcEEEEEeccceEEE
No 492
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=81.70 E-value=1.2e+02 Score=35.91 Aligned_cols=186 Identities=15% Similarity=0.203 Sum_probs=96.2
Q ss_pred eCCCeEEEEeCCCceEEEeeecc-cCcEEEEEE---ec----CC-CcEEEEEeC---------CCeEEEEeCCCCCCCCc
Q 004214 304 SKDNSVRLWDSESRCCVGVGTGH-MGAVGAVAF---SK----KL-QNFLVSGSS---------DHTIKVWSFDGLSDDAE 365 (768)
Q Consensus 304 ~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~---~~----~~-~~~l~s~~~---------dg~i~iwd~~~~~~~~~ 365 (768)
+..+.|.+.+..+++.+..+.-. ...+.++.. .. .+ +.++++|.. .|.+.++|+-.--+.+.
T Consensus 1001 ~~~f~i~LisP~sw~vi~~iefq~~E~v~~~k~v~L~~~~t~~~~k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepg 1080 (1366)
T KOG1896|consen 1001 GEQFSIQLISPESWEVIDKIEFQENEHVLHMKYVILDDEETTKGKKPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPG 1080 (1366)
T ss_pred cccceeEEecCCccccccccccCccceeeEEEEEEEEecccccCCcceEEEEEeecccccccCcccEEEEEEEEecCCCC
Confidence 34556777766666655443321 122333322 21 11 347777743 48899999764322222
Q ss_pred ccccc-ceeeEe-eccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC-CCceEEEEeccCCCeEEEEEccCCCEEEEeeC
Q 004214 366 QPMNL-KAKAVV-AAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLP-DLVSVVTFRGHKRGIWSVEFSPVDQVVITASG 442 (768)
Q Consensus 366 ~~~~~-~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~ 442 (768)
.|... +..... ....++|.+++ .-+|.++.+ ....|.+|+++ ....+.. .--.-++.-....--.++|+.|.-
T Consensus 1081 kP~t~~KlKel~~eE~KGtVsavc-eV~G~l~~~--~GqKI~v~~l~r~~~ligV-aFiD~~~yv~s~~~vknlIl~gDV 1156 (1366)
T KOG1896|consen 1081 KPFTKNKLKELYIEEQKGTVSAVC-EVRGHLLSS--QGQKIIVRKLDRDSELIGV-AFIDLPLYVHSMKVVKNLILAGDV 1156 (1366)
T ss_pred CCcccceeeeeehhhcccceEEEE-EeccEEEEc--cCcEEEEEEeccCCcceee-EEeccceeEEehhhhhhheehhhh
Confidence 22221 122222 23345555544 346654443 33579999994 4333322 112223333333334667777776
Q ss_pred CCcEEEEeCCCCc-eeEEee--cCCCcEEEEEEEeCCC--EEEEEeCCCcEEEEEC
Q 004214 443 DKTIKIWSISDGS-CLKTFE--GHTSSVLRASFLTRGA--QIVSCGADGLVKLWTV 493 (768)
Q Consensus 443 d~~i~iwd~~~~~-~~~~~~--~~~~~v~~~~~s~~~~--~l~s~~~dg~i~iwd~ 493 (768)
-..|.+.-....- .+.-+. ...-.+.++.|.-+|. +++++..+++|++|-.
T Consensus 1157 ~ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~Y 1212 (1366)
T KOG1896|consen 1157 MKSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSDADRNIHVYMY 1212 (1366)
T ss_pred hhceEEEEEccCceEEEEeecCCchhhceeeeeEEcCCeeEEEEEcCCCcEEEEEe
Confidence 6667766554322 222222 1223577788888876 5688889999988754
No 493
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=81.60 E-value=68 Score=33.06 Aligned_cols=199 Identities=12% Similarity=0.155 Sum_probs=108.3
Q ss_pred CCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEE-EEEEe-CC---CeEEEEeCC--CceEEEe
Q 004214 250 EEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKIL-IVTGS-KD---NSVRLWDSE--SRCCVGV 322 (768)
Q Consensus 250 ~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~-l~~~~-~d---g~i~iwd~~--~~~~~~~ 322 (768)
+...+++.....+-+.+||+........-.+.-..| .+...+.-.++.. |+.++ .+ ..|++|.+. ++.....
T Consensus 66 p~kSlIigTdK~~GL~VYdL~Gk~lq~~~~Gr~NNV-Dvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v 144 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLDGKELQSLPVGRPNNV-DVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDV 144 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETTS-EEEEE-SS-EEEE-EEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-
T ss_pred cccceEEEEeCCCCEEEEcCCCcEEEeecCCCccee-eeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEc
Confidence 344577777778999999998766544323333333 2222222233332 33443 32 468999664 4443222
Q ss_pred ee------cccCcEEEEEEe--c-CCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCC
Q 004214 323 GT------GHMGAVGAVAFS--K-KLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDS 393 (768)
Q Consensus 323 ~~------~~~~~v~~~~~~--~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 393 (768)
.. .....+..+|+- | ++..+++....+|.+..|.+....... ......+.+. -...+..+.......
T Consensus 145 ~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~---v~~~lVR~f~-~~sQ~EGCVVDDe~g 220 (381)
T PF02333_consen 145 TDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGK---VSATLVREFK-VGSQPEGCVVDDETG 220 (381)
T ss_dssp CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSS---EEEEEEEEEE--SS-EEEEEEETTTT
T ss_pred CCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCc---EeeEEEEEec-CCCcceEEEEecccC
Confidence 11 112346677763 3 355678888899999999886322111 1112233332 245788999999888
Q ss_pred EEEEEeCCCcEEEEeCCCC-----ceEEEEec--cCCCeEEEEEcc--CC--CEEEEeeCCCcEEEEeCCC
Q 004214 394 LVCTGSQDRTACVWRLPDL-----VSVVTFRG--HKRGIWSVEFSP--VD--QVVITASGDKTIKIWSISD 453 (768)
Q Consensus 394 ~l~~~~~dg~i~i~d~~~~-----~~~~~~~~--~~~~v~~v~~s~--~~--~~l~t~~~d~~i~iwd~~~ 453 (768)
.|..+-.+.-|.-|+.+.. ..+....+ ....|..+++-. ++ -+|++.-.+++..||+...
T Consensus 221 ~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~ 291 (381)
T PF02333_consen 221 RLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREG 291 (381)
T ss_dssp EEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESST
T ss_pred CEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCC
Confidence 9999999988888887522 22222222 334677777643 33 2445555678899999764
No 494
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=81.25 E-value=47 Score=30.91 Aligned_cols=176 Identities=13% Similarity=0.104 Sum_probs=0.0
Q ss_pred EEeeCC-CccEEEEEeCCCcEEEEECC--CCeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEE-------EEECCCC
Q 004214 37 LFHPDT-DKSLLFSGSDDATVRVWDLL--AKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVN-------LWDLRDY 106 (768)
Q Consensus 37 ~~spd~-~~~~l~sg~~dg~I~iWd~~--~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~-------vWd~~~~ 106 (768)
++.+.| +. |+.+...+.|.+|++. ..+.+.+|..- +.|..|.++..|+||+|.-.+.... ..+|+..
T Consensus 22 ~~c~~g~d~--Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~ 98 (215)
T PF14761_consen 22 AVCCGGPDA--LFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQ 98 (215)
T ss_pred eeeccCCce--EEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhh
Q ss_pred ----eeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceee
Q 004214 107 ----SCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTI 182 (768)
Q Consensus 107 ----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~ 182 (768)
.++........+.....-+.+..+...--...........-.....++.++.+ .+.+|.+.........-.-...
T Consensus 99 ~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~-~l~lf~l~~~~~~~~~~~~lDF 177 (215)
T PF14761_consen 99 KEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGN-KLVLFTLKYQTIQSEKFSFLDF 177 (215)
T ss_pred cccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCC-EEEEEEEEEEEEecccccEEec
Q ss_pred cccccCcccceeEEEEccCCCceEEEEecCeEEE
Q 004214 183 SFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLL 216 (768)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~ 216 (768)
.........++......--++.+++.+......+
T Consensus 178 e~~l~~~~~~~~p~~v~ic~~yiA~~s~~ev~Vl 211 (215)
T PF14761_consen 178 ERSLIDHIDNFKPTQVAICEGYIAVMSDLEVLVL 211 (215)
T ss_pred hhhhhheecCceEEEEEEEeeEEEEecCCEEEEE
No 495
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=81.25 E-value=96 Score=34.51 Aligned_cols=247 Identities=15% Similarity=0.156 Sum_probs=119.5
Q ss_pred CCCCEEEEEeCCCcEEEEECC-Cceeeeeee-CCccceEEEeeeeecCCCEEEEEEeCCCe-EEEEeCCCc---------
Q 004214 250 EEEQYLAVATNIEQVQVYDLS-SMSCSYVLA-GHSEIVLCLDTCALSSGKILIVTGSKDNS-VRLWDSESR--------- 317 (768)
Q Consensus 250 ~~~~~l~~~~~~~~i~i~d~~-~~~~~~~~~-~~~~~v~~l~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~--------- 317 (768)
++.+.+-.|-+...|.-|=+. +.+.+..++ ..+..|.|++.....++..+.+.|-.++. -++-.+..+
T Consensus 37 ~~sn~IdiGIS~S~ISsYIi~PTPKLiwsypi~pt~iV~~~dV~~~~~~~~~~~~glt~rKk~~ll~i~~~~~~~~~~~~ 116 (670)
T PF10395_consen 37 PDSNQIDIGISGSAISSYIIKPTPKLIWSYPISPTTIVECCDVLEKSDGKKLYCVGLTERKKFKLLLIERKVGSTEDGTV 116 (670)
T ss_pred CCCceEEEEeccchhhheecCCCcceeEeeccCcCceEEEEEeEecCCCcEEEEEEEeeCCeeEEEEEEccCcccccccc
Confidence 344555555554555555443 445555543 34567788875554454444555544432 343332221
Q ss_pred --e--EEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCC
Q 004214 318 --C--CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDS 393 (768)
Q Consensus 318 --~--~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 393 (768)
+ ....++ -...|..+.+.++++ .+++.-.+|.|.+||................... ..+..-|..........
T Consensus 117 ~~e~~~~~~~k-l~~kvv~Ik~~~~~~-~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~-v~ys~fv~~~~~~~~~~ 193 (670)
T PF10395_consen 117 NSETTNEFELK-LDDKVVGIKFSSDGK-IIYVVLENGSIQIYDFSENSLEKVPQLKLKSSIN-VSYSKFVNDFELENGKD 193 (670)
T ss_pred CccccceEEEE-cccceEEEEEecCCC-EEEEEEcCCcEEEEeccccccccccccccccccc-eehhhhhcccccccCCc
Confidence 1 011111 356788999998766 7888999999999999332211100000000000 00112222222112233
Q ss_pred EEEEEeC-CC---cEEEEeC-CCCceEEEEe---ccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecC--
Q 004214 394 LVCTGSQ-DR---TACVWRL-PDLVSVVTFR---GHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGH-- 463 (768)
Q Consensus 394 ~l~~~~~-dg---~i~i~d~-~~~~~~~~~~---~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~-- 463 (768)
++++.+. ++ ..+++.+ .+...+..+. .+........|......|..- .+++|.+|++...+..+++.-.
T Consensus 194 ~ll~v~~~~~~k~~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l-~~~~i~~ysip~f~~~~tI~l~~i 272 (670)
T PF10395_consen 194 LLLTVSQLSNSKLSYKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL-SKKTISSYSIPNFQIQKTISLPSI 272 (670)
T ss_pred eEEEEEEcCCCcEEEEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE-eCCEEEEEEcCCceEEEEEEechh
Confidence 4444443 32 4666776 1222333332 122223333333333333333 6689999999888877766522
Q ss_pred ---C-CcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEe
Q 004214 464 ---T-SSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATY 502 (768)
Q Consensus 464 ---~-~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 502 (768)
. ..+.++.- |..++++.+. +..|++.|+.-...+..+
T Consensus 273 i~~~~~~~vSl~~-~s~nRvLLs~-~nkIyLld~~~~siLse~ 313 (670)
T PF10395_consen 273 IDKESDDLVSLKP-PSPNRVLLSV-NNKIYLLDLKFESILSEF 313 (670)
T ss_pred hccccccceEeec-CCCCeEEEEc-CCEEEEEeehhhhhhhhh
Confidence 1 12333322 3333443332 468999998654444433
No 496
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=80.81 E-value=69 Score=32.59 Aligned_cols=64 Identities=13% Similarity=0.188 Sum_probs=34.8
Q ss_pred CCCEEEEEeCC-----CcEEEEeCCCCce--EEEEeccCCCeEEEEEccCCCEEEEeeCCC----cEEEEeCCCCc
Q 004214 391 NDSLVCTGSQD-----RTACVWRLPDLVS--VVTFRGHKRGIWSVEFSPVDQVVITASGDK----TIKIWSISDGS 455 (768)
Q Consensus 391 ~~~~l~~~~~d-----g~i~i~d~~~~~~--~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~----~i~iwd~~~~~ 455 (768)
++++.+.|+.. ..+..||+.+.+= +..+... ......+...++++.+.|+.++ .+.+||..+.+
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~-~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGE-PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCC-CCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence 56777777642 3578888776532 2222211 1112222334577777777654 35688887654
No 497
>PLN02153 epithiospecifier protein
Probab=80.52 E-value=73 Score=32.71 Aligned_cols=23 Identities=17% Similarity=0.263 Sum_probs=15.0
Q ss_pred cCCCEEEEEeCC-----------CcEEEEeCCCC
Q 004214 390 PNDSLVCTGSQD-----------RTACVWRLPDL 412 (768)
Q Consensus 390 ~~~~~l~~~~~d-----------g~i~i~d~~~~ 412 (768)
-++++++.|+.+ ..+.+||..+.
T Consensus 136 ~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~ 169 (341)
T PLN02153 136 DENHVYVFGGVSKGGLMKTPERFRTIEAYNIADG 169 (341)
T ss_pred ECCEEEEECCccCCCccCCCcccceEEEEECCCC
Confidence 356777777754 14677887764
No 498
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=80.46 E-value=65 Score=32.07 Aligned_cols=177 Identities=11% Similarity=0.096 Sum_probs=88.1
Q ss_pred CcEEEEECCCceeeeeeeCC------ccceEEEeeeeecC---CCEEEEEEeCCCeEEEEeCCCceEEEeeecccC----
Q 004214 262 EQVQVYDLSSMSCSYVLAGH------SEIVLCLDTCALSS---GKILIVTGSKDNSVRLWDSESRCCVGVGTGHMG---- 328 (768)
Q Consensus 262 ~~i~i~d~~~~~~~~~~~~~------~~~v~~l~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---- 328 (768)
..|.+||+.+.+.++.+.-. .+....+..-..+. +....++-+..+.|.++|+.+++..+....+..
T Consensus 34 pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~ 113 (287)
T PF03022_consen 34 PKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPD 113 (287)
T ss_dssp -EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-S
T ss_pred cEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceecc
Confidence 46778888888877665432 34445554212121 134344545557899999999887766543221
Q ss_pred ---------------cEEEEEEec---CCCcEEEEEeCCCeEEEEeCCCC--CCCCccccc--cceeeEeeccCCCeEEE
Q 004214 329 ---------------AVGAVAFSK---KLQNFLVSGSSDHTIKVWSFDGL--SDDAEQPMN--LKAKAVVAAHGKDINSL 386 (768)
Q Consensus 329 ---------------~v~~~~~~~---~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~--~~~~~~~~~~~~~i~~~ 386 (768)
.+..++.+| +++ .|.-..-.+ -++|.++.. ......... ......+.........+
T Consensus 114 ~~~~~i~g~~~~~~dg~~gial~~~~~d~r-~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~ 191 (287)
T PF03022_consen 114 AGPFTIGGESFQWPDGIFGIALSPISPDGR-WLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGM 191 (287)
T ss_dssp SEEEEETTEEEEETTSEEEEEE-TTSTTS--EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEE
T ss_pred ccceeccCceEecCCCccccccCCCCCCcc-EEEEEeCCC-CcEEEEEHHHhhCccccccccccccceeccccCCCCceE
Confidence 244444444 322 232222111 123332211 000000000 01111111122466789
Q ss_pred EEccCCCEEEEEeCCCcEEEEeCCCCc---eEEEE-ecc--CCCeEEEEEcc--CCCEEEEe
Q 004214 387 AVAPNDSLVCTGSQDRTACVWRLPDLV---SVVTF-RGH--KRGIWSVEFSP--VDQVVITA 440 (768)
Q Consensus 387 ~~s~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~-~~~--~~~v~~v~~s~--~~~~l~t~ 440 (768)
+++++|.++++--..+.|..|+..+.- ....+ ... -..+..+.+.+ +|.+.+.+
T Consensus 192 ~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 192 AIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp EEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred EECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 999999999999999999999987621 11112 222 24567888888 66655554
No 499
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=80.31 E-value=69 Score=34.13 Aligned_cols=31 Identities=26% Similarity=0.353 Sum_probs=25.5
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 004214 507 DKIWALAVGKKTEMFATGGSDALVNLWHDST 537 (768)
Q Consensus 507 ~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~ 537 (768)
..|.+++..+..+.+++...+|.|.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 3499999999999999999999999999974
No 500
>PRK05560 DNA gyrase subunit A; Validated
Probab=80.11 E-value=1.3e+02 Score=35.19 Aligned_cols=276 Identities=8% Similarity=-0.003 Sum_probs=0.0
Q ss_pred cCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEEC---------C
Q 004214 200 PSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDL---------S 270 (768)
Q Consensus 200 ~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~---------~ 270 (768)
++.+.++..+.+|.++.............-.-.....--.+......+.......++..++.|.+..... .
T Consensus 496 ~~E~v~vllS~~GyIKri~~~~~~~~~~~~~g~~~~klKe~D~l~~~~~~~t~d~LllfTs~Grv~~l~v~~iP~~~~~~ 575 (805)
T PRK05560 496 PEEDVVVTLTHGGYIKRTPLDEYRAQRRGGKGVSGAKTKEDDFVEHLFVASTHDTLLFFTNRGRVYRLKVYEIPEASRTA 575 (805)
T ss_pred CCCCEEEEEeCCCEEEEcchhhhhhhcccCCCccccccCCCCeeEEEEEecCCCeEEEEecCCeEEEEEhhhCcCCCcCC
Q ss_pred Cceee---eeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCC-------ceEEEeeecccCcEEEEEEecCCC
Q 004214 271 SMSCS---YVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES-------RCCVGVGTGHMGAVGAVAFSKKLQ 340 (768)
Q Consensus 271 ~~~~~---~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~-------~~~~~~~~~~~~~v~~~~~~~~~~ 340 (768)
.|..+ ..+......+.++..--..+... ++..+.+|.++--++.. +.....+......+.....+....
T Consensus 576 ~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~-lvlvTk~GyiKRi~l~~~~~~~r~G~~~ikLke~D~lv~v~~~~~~d~ 654 (805)
T PRK05560 576 RGRPIVNLLPLEPGEKITAILPVREFDDDKY-LFFATKNGTVKKTSLSEFSNIRSNGIIAINLDEGDELIGVRLTDGDDD 654 (805)
T ss_pred CCeEHHHhcCCCCCceEEEEEeccCCCCCCE-EEEEeCCCEEEEEEhHHhhhcccCCceeeccCCCCEEEEEEEeCCCCE
Q ss_pred cEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeC---------CC
Q 004214 341 NFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRL---------PD 411 (768)
Q Consensus 341 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~---------~~ 411 (768)
++..+..|.+..+.................... .....-+..+.+.+++..++..+..|.++...+ ..
T Consensus 655 --lll~T~~Gr~~r~~~~eIp~~gr~~~Gv~~i~L-~~~E~Vv~~~~v~~~~~~il~vTk~G~iKr~~l~e~~~~~R~~k 731 (805)
T PRK05560 655 --ILLATKNGKAIRFPESDVRPMGRTARGVRGIKL-REGDEVVSMDVVREDSQEILTVTENGYGKRTPVSEYRLQGRGGK 731 (805)
T ss_pred --EEEEECCCcEEEEEhhhcCccCcccCCcccccC-CCCCEEEEEEEEcCCCcEEEEEEeCCeEEEEEHHHhhccCCCCC
Q ss_pred CceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEE
Q 004214 412 LVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSC 482 (768)
Q Consensus 412 ~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 482 (768)
+.....+......+..+........++..+.+|.+..++... +.........|..+.+..++..+...
T Consensus 732 G~~~lkl~~~~d~lv~v~~v~~~~~v~i~T~~G~~lrf~~~e---I~~~gR~a~GVk~I~L~~~D~V~~~~ 799 (805)
T PRK05560 732 GVITIKITEKNGKLVGALPVDDDDEIMLITDSGKLIRTRVSE---ISITGRNTQGVRLIRLDEGDKVVSVA 799 (805)
T ss_pred cEEeeeccCCCCeEEEEEEecCCCeEEEEecCCeEEEEEHHH---CCccccCCCCeeeEecCCCCEEEEEE
Done!