Query 004214
Match_columns 768
No_of_seqs 1179 out of 4184
Neff 10.9
Searched_HMMs 29240
Date Mon Mar 25 17:54:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004214.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004214hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ymu_A WD-40 repeat protein; u 100.0 3.9E-60 1.3E-64 530.5 69.6 489 2-534 30-577 (577)
2 1nr0_A Actin interacting prote 100.0 5E-59 1.7E-63 522.1 60.8 490 2-536 32-610 (611)
3 2ymu_A WD-40 repeat protein; u 100.0 1.8E-57 6.2E-62 508.9 67.8 471 22-536 8-538 (577)
4 1nr0_A Actin interacting prote 100.0 2.6E-54 8.9E-59 483.9 60.3 448 28-538 16-568 (611)
5 3sfz_A APAF-1, apoptotic pepti 100.0 3.5E-55 1.2E-59 534.6 52.5 485 2-536 629-1248(1249)
6 1pgu_A Actin interacting prote 100.0 1.4E-53 4.7E-58 481.6 58.7 480 2-537 32-614 (615)
7 3sfz_A APAF-1, apoptotic pepti 100.0 1.6E-51 5.4E-56 502.4 54.5 465 23-539 608-1209(1249)
8 2oaj_A Protein SNI1; WD40 repe 100.0 4.1E-51 1.4E-55 473.8 52.9 493 2-538 31-733 (902)
9 2oaj_A Protein SNI1; WD40 repe 100.0 1.2E-50 4.2E-55 469.8 54.6 480 25-535 12-659 (902)
10 1pgu_A Actin interacting prote 100.0 1.8E-48 6.2E-53 439.7 56.7 446 28-538 16-573 (615)
11 3mkq_A Coatomer beta'-subunit; 100.0 5.4E-46 1.9E-50 433.8 50.6 452 22-534 5-502 (814)
12 3mkq_A Coatomer beta'-subunit; 100.0 7.7E-44 2.6E-48 415.6 57.6 467 2-540 27-604 (814)
13 1vyh_C Platelet-activating fac 100.0 6.2E-44 2.1E-48 379.2 41.7 290 23-494 101-410 (410)
14 3ow8_A WD repeat-containing pr 100.0 2.8E-43 9.7E-48 360.5 44.3 291 232-536 25-320 (321)
15 1got_B GT-beta; complex (GTP-b 100.0 5.9E-43 2E-47 362.1 45.1 294 20-492 45-340 (340)
16 3iz6_a 40S ribosomal protein R 100.0 3.5E-44 1.2E-48 377.4 34.7 317 9-497 45-377 (380)
17 1vyh_C Platelet-activating fac 100.0 3.1E-43 1.1E-47 373.8 41.4 288 233-535 102-409 (410)
18 3ow8_A WD repeat-containing pr 100.0 1.7E-42 5.8E-47 354.7 42.3 295 20-494 22-320 (321)
19 1r5m_A SIR4-interacting protei 100.0 1.2E-42 4E-47 373.0 42.1 342 10-536 25-424 (425)
20 2ynn_A Coatomer subunit beta'; 100.0 8.1E-42 2.8E-46 347.5 43.8 293 22-495 5-302 (304)
21 2pbi_B Guanine nucleotide-bind 100.0 8.8E-42 3E-46 354.9 43.8 297 21-492 55-354 (354)
22 1got_B GT-beta; complex (GTP-b 100.0 2E-41 6.9E-46 350.6 45.2 289 230-534 46-340 (340)
23 2ynn_A Coatomer subunit beta'; 100.0 3.8E-41 1.3E-45 342.6 43.1 293 230-537 4-302 (304)
24 4g56_B MGC81050 protein; prote 100.0 3.1E-42 1E-46 358.6 35.4 310 7-497 23-345 (357)
25 4g56_B MGC81050 protein; prote 100.0 1.4E-41 4.7E-46 353.7 36.6 247 280-542 92-348 (357)
26 3frx_A Guanine nucleotide-bind 100.0 2.2E-40 7.4E-45 339.3 44.3 294 228-538 6-318 (319)
27 3fm0_A Protein CIAO1; WDR39,SG 100.0 6.8E-41 2.3E-45 347.2 40.9 305 20-502 5-342 (345)
28 4gqb_B Methylosome protein 50; 100.0 4.1E-41 1.4E-45 346.8 37.2 208 278-497 123-333 (344)
29 3frx_A Guanine nucleotide-bind 100.0 5.1E-40 1.7E-44 336.6 42.8 293 21-496 8-318 (319)
30 2pbi_B Guanine nucleotide-bind 100.0 5.1E-40 1.7E-44 341.6 43.2 289 231-534 56-354 (354)
31 4gqb_B Methylosome protein 50; 100.0 1.4E-40 4.7E-45 342.9 38.2 243 281-539 81-333 (344)
32 1gxr_A ESG1, transducin-like e 100.0 9.9E-40 3.4E-44 338.3 42.2 326 29-535 8-335 (337)
33 3iz6_a 40S ribosomal protein R 100.0 7.5E-41 2.6E-45 351.9 33.6 300 230-538 57-376 (380)
34 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.2E-39 4E-44 337.9 41.7 301 230-542 6-340 (345)
35 4ery_A WD repeat-containing pr 100.0 3E-39 1E-43 330.5 44.0 295 19-494 12-311 (312)
36 2pm9_A Protein WEB1, protein t 100.0 8.7E-42 3E-46 365.1 25.9 334 31-496 13-415 (416)
37 2hes_X YDR267CP; beta-propelle 100.0 2.8E-39 9.6E-44 332.8 41.8 302 18-495 2-328 (330)
38 2xzm_R RACK1; ribosome, transl 100.0 2.9E-39 9.8E-44 335.0 40.8 296 228-538 10-341 (343)
39 2xzm_R RACK1; ribosome, transl 100.0 4.9E-39 1.7E-43 333.2 42.2 293 21-497 12-342 (343)
40 3vl1_A 26S proteasome regulato 100.0 1.1E-39 3.9E-44 349.1 38.6 343 32-537 58-419 (420)
41 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.5E-38 5.1E-43 342.8 47.0 322 21-538 109-443 (445)
42 4ery_A WD repeat-containing pr 100.0 1.6E-38 5.4E-43 325.2 44.3 292 230-536 14-311 (312)
43 2hes_X YDR267CP; beta-propelle 100.0 8.3E-39 2.8E-43 329.3 42.0 293 231-537 6-328 (330)
44 1r5m_A SIR4-interacting protei 100.0 2.8E-39 9.6E-44 346.6 40.0 323 2-494 60-424 (425)
45 1erj_A Transcriptional repress 100.0 1.8E-38 6.2E-43 335.4 44.9 239 251-496 134-390 (393)
46 2pm9_A Protein WEB1, protein t 100.0 3.2E-41 1.1E-45 360.7 22.6 288 238-538 66-415 (416)
47 1erj_A Transcriptional repress 100.0 3.8E-38 1.3E-42 333.0 45.7 285 236-537 61-389 (393)
48 4aow_A Guanine nucleotide-bind 100.0 3.3E-38 1.1E-42 327.4 44.0 297 18-497 26-339 (340)
49 3v7d_B Cell division control p 100.0 2.2E-37 7.6E-42 335.9 49.5 324 21-534 112-460 (464)
50 2j04_B YDR362CP, TAU91; beta p 100.0 5.5E-40 1.9E-44 355.2 26.9 283 237-537 205-517 (524)
51 4aow_A Guanine nucleotide-bind 100.0 5.3E-37 1.8E-41 318.2 45.5 297 228-539 27-339 (340)
52 3odt_A Protein DOA1; ubiquitin 100.0 3.2E-37 1.1E-41 315.7 42.5 300 16-503 3-304 (313)
53 3gre_A Serine/threonine-protei 100.0 7.4E-39 2.5E-43 344.6 31.7 366 14-534 47-437 (437)
54 1gxr_A ESG1, transducin-like e 100.0 2.8E-37 9.7E-42 319.8 41.6 308 2-493 23-335 (337)
55 1sq9_A Antiviral protein SKI8; 100.0 2.1E-37 7.1E-42 328.9 38.4 298 229-538 6-396 (397)
56 3v7d_B Cell division control p 100.0 1E-36 3.4E-41 330.7 44.2 324 2-450 134-460 (464)
57 3zwl_B Eukaryotic translation 100.0 1.2E-36 4.2E-41 319.3 42.2 309 20-459 22-352 (369)
58 3zwl_B Eukaryotic translation 100.0 2.9E-36 9.8E-41 316.5 45.0 304 230-540 23-349 (369)
59 3vl1_A 26S proteasome regulato 100.0 1.6E-37 5.6E-42 332.4 36.0 332 2-495 70-419 (420)
60 3dm0_A Maltose-binding peripla 100.0 7.1E-37 2.4E-41 348.6 42.5 294 230-536 373-692 (694)
61 2ovr_B FBW7, F-BOX/WD repeat p 100.0 4.6E-36 1.6E-40 323.4 46.1 300 2-453 131-442 (445)
62 4a11_B DNA excision repair pro 100.0 7.6E-38 2.6E-42 333.5 31.8 371 52-536 21-404 (408)
63 3ei3_B DNA damage-binding prot 100.0 4.2E-37 1.4E-41 324.6 37.0 302 14-495 57-382 (383)
64 4a11_B DNA excision repair pro 100.0 8.1E-38 2.8E-42 333.3 31.3 351 8-495 21-405 (408)
65 1sq9_A Antiviral protein SKI8; 100.0 3.7E-37 1.3E-41 326.9 34.7 297 22-497 8-397 (397)
66 3dm0_A Maltose-binding peripla 100.0 3.8E-36 1.3E-40 342.6 44.5 293 21-495 373-693 (694)
67 2j04_B YDR362CP, TAU91; beta p 100.0 5E-38 1.7E-42 339.9 25.1 313 2-495 175-517 (524)
68 3ei3_B DNA damage-binding prot 100.0 5.9E-36 2E-40 315.8 40.3 289 230-537 64-382 (383)
69 1k8k_C P40, ARP2/3 complex 41 100.0 1.9E-36 6.6E-41 318.3 35.1 302 25-497 3-363 (372)
70 3k26_A Polycomb protein EED; W 100.0 2.3E-36 7.7E-41 317.0 34.7 290 234-537 13-366 (366)
71 3i2n_A WD repeat-containing pr 100.0 2.7E-36 9.2E-41 315.3 34.9 296 23-498 11-356 (357)
72 3odt_A Protein DOA1; ubiquitin 100.0 2E-35 6.9E-40 302.4 40.4 287 229-540 8-299 (313)
73 4e54_B DNA damage-binding prot 100.0 8E-37 2.7E-41 327.7 31.2 299 23-499 112-434 (435)
74 1k8k_C P40, ARP2/3 complex 41 100.0 8.6E-36 2.9E-40 313.4 38.2 292 237-540 6-364 (372)
75 3i2n_A WD repeat-containing pr 100.0 4.7E-36 1.6E-40 313.4 34.3 294 233-539 12-355 (357)
76 3k26_A Polycomb protein EED; W 100.0 7.5E-36 2.6E-40 313.0 33.8 299 25-495 13-366 (366)
77 4gga_A P55CDC, cell division c 100.0 1.1E-34 3.9E-39 309.6 40.3 278 242-538 108-396 (420)
78 4gga_A P55CDC, cell division c 100.0 1.9E-34 6.6E-39 307.8 41.9 289 2-474 118-416 (420)
79 4e54_B DNA damage-binding prot 100.0 4.1E-36 1.4E-40 322.1 29.1 292 234-540 114-433 (435)
80 2pm7_B Protein transport prote 100.0 6.6E-35 2.3E-39 295.4 35.0 251 276-537 3-285 (297)
81 4aez_A CDC20, WD repeat-contai 100.0 2.3E-34 7.7E-39 305.3 40.1 283 242-543 96-386 (401)
82 4h5i_A Guanine nucleotide-exch 100.0 2.5E-35 8.7E-40 307.2 31.1 201 326-538 132-344 (365)
83 1p22_A F-BOX/WD-repeat protein 100.0 1.5E-34 5.3E-39 310.2 37.3 279 236-540 130-417 (435)
84 3dwl_C Actin-related protein 2 100.0 5.6E-36 1.9E-40 315.4 25.5 298 25-493 6-377 (377)
85 4aez_A CDC20, WD repeat-contai 100.0 2.7E-34 9.4E-39 304.7 38.4 294 26-461 87-388 (401)
86 3dwl_C Actin-related protein 2 100.0 7.4E-36 2.5E-40 314.4 24.5 285 237-535 9-377 (377)
87 4h5i_A Guanine nucleotide-exch 100.0 1.1E-34 3.6E-39 302.5 32.1 202 282-496 133-344 (365)
88 4ggc_A P55CDC, cell division c 100.0 5.3E-33 1.8E-37 285.1 42.3 277 242-537 28-315 (318)
89 1k32_A Tricorn protease; prote 100.0 2.1E-32 7.2E-37 325.4 53.6 489 3-539 27-639 (1045)
90 1yfq_A Cell cycle arrest prote 100.0 4.7E-34 1.6E-38 296.3 34.3 282 24-492 5-321 (342)
91 2j04_A TAU60, YPL007P, hypothe 100.0 7.8E-36 2.7E-40 312.4 19.9 319 28-526 13-350 (588)
92 3mmy_A MRNA export factor; mRN 100.0 2.9E-34 1E-38 301.0 31.9 300 12-493 21-344 (368)
93 4ggc_A P55CDC, cell division c 100.0 5.6E-33 1.9E-37 284.9 40.1 282 33-497 28-317 (318)
94 1p22_A F-BOX/WD-repeat protein 100.0 1.4E-33 4.6E-38 302.8 35.8 292 27-515 130-433 (435)
95 3bg1_A Protein SEC13 homolog; 100.0 1.3E-34 4.5E-39 295.9 25.1 249 277-536 8-292 (316)
96 2pm7_B Protein transport prote 100.0 5.1E-33 1.8E-37 281.5 34.8 250 234-494 4-284 (297)
97 3dw8_B Serine/threonine-protei 100.0 2.8E-33 9.4E-38 302.2 34.2 324 29-494 27-445 (447)
98 1yfq_A Cell cycle arrest prote 100.0 1.1E-32 3.8E-37 285.9 36.2 283 235-529 7-315 (342)
99 3dw8_B Serine/threonine-protei 100.0 3.4E-33 1.2E-37 301.5 33.0 284 237-536 26-445 (447)
100 3gre_A Serine/threonine-protei 100.0 2E-33 6.8E-38 302.2 30.3 330 2-492 78-437 (437)
101 3f3f_A Nucleoporin SEH1; struc 100.0 1.2E-32 4.1E-37 286.4 32.8 309 24-460 5-344 (351)
102 3jrp_A Fusion protein of prote 100.0 2.1E-32 7.1E-37 288.2 34.0 262 20-456 1-290 (379)
103 1l0q_A Surface layer protein; 100.0 1.2E-30 4E-35 276.2 47.4 336 2-528 4-372 (391)
104 3bg1_A Protein SEC13 homolog; 100.0 3.8E-33 1.3E-37 285.1 26.4 252 233-494 7-292 (316)
105 2xyi_A Probable histone-bindin 100.0 2.7E-32 9.2E-37 291.9 33.1 260 276-540 122-413 (430)
106 3f3f_A Nucleoporin SEH1; struc 100.0 4.5E-32 1.5E-36 282.0 33.9 260 276-539 5-339 (351)
107 2aq5_A Coronin-1A; WD40 repeat 100.0 6.6E-33 2.3E-37 294.3 27.7 281 244-538 39-343 (402)
108 3jrp_A Fusion protein of prote 100.0 4.2E-32 1.4E-36 285.9 33.5 254 273-537 2-287 (379)
109 3vu4_A KMHSV2; beta-propeller 100.0 1E-31 3.4E-36 279.2 33.5 226 294-538 68-337 (355)
110 2j04_A TAU60, YPL007P, hypothe 100.0 6.2E-34 2.1E-38 298.1 16.4 304 2-484 29-350 (588)
111 3mmy_A MRNA export factor; mRN 100.0 2.1E-31 7.3E-36 279.2 34.7 286 232-535 32-344 (368)
112 1k32_A Tricorn protease; prote 100.0 6.3E-30 2.1E-34 304.2 49.2 432 29-535 13-500 (1045)
113 3vu4_A KMHSV2; beta-propeller 100.0 2.8E-31 9.6E-36 275.8 32.0 305 14-496 3-337 (355)
114 3bws_A Protein LP49; two-domai 100.0 1.4E-29 4.9E-34 271.8 45.8 278 241-536 124-431 (433)
115 2w18_A PALB2, fancn, partner a 100.0 3.7E-30 1.3E-34 252.8 36.3 159 375-535 173-355 (356)
116 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.7E-30 6E-35 279.8 36.5 285 240-537 5-391 (450)
117 2aq5_A Coronin-1A; WD40 repeat 100.0 5E-31 1.7E-35 279.8 29.7 294 32-456 36-345 (402)
118 2w18_A PALB2, fancn, partner a 100.0 2.5E-30 8.6E-35 254.0 31.6 278 6-493 59-355 (356)
119 3bws_A Protein LP49; two-domai 100.0 7.1E-29 2.4E-33 266.4 42.8 330 29-495 59-432 (433)
120 3jro_A Fusion protein of prote 100.0 6E-31 2.1E-35 301.0 26.9 251 276-537 3-285 (753)
121 3lrv_A PRE-mRNA-splicing facto 100.0 1.6E-30 5.4E-35 269.4 26.6 210 266-493 108-331 (343)
122 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.5E-29 5E-34 272.6 34.8 197 281-493 148-389 (450)
123 2xyi_A Probable histone-bindin 100.0 8.6E-30 2.9E-34 272.4 32.0 255 233-496 122-411 (430)
124 3lrv_A PRE-mRNA-splicing facto 100.0 2.7E-30 9.3E-35 267.6 26.6 261 251-535 47-331 (343)
125 1l0q_A Surface layer protein; 100.0 1.8E-28 6E-33 259.4 40.0 268 253-538 3-276 (391)
126 1nir_A Nitrite reductase; hemo 100.0 1.6E-28 5.4E-33 268.1 39.7 331 37-505 144-524 (543)
127 4gq1_A NUP37; propeller, trans 100.0 1.5E-30 5.2E-35 274.4 22.5 268 243-535 92-387 (393)
128 1nir_A Nitrite reductase; hemo 100.0 6.4E-28 2.2E-32 263.3 42.7 338 2-463 151-524 (543)
129 3jro_A Fusion protein of prote 100.0 2.5E-29 8.6E-34 287.6 27.4 249 234-495 4-285 (753)
130 4gq1_A NUP37; propeller, trans 100.0 6.8E-28 2.3E-32 254.1 24.2 224 233-493 130-387 (393)
131 2hqs_A Protein TOLB; TOLB, PAL 100.0 2.9E-26 9.8E-31 242.9 31.6 288 2-477 77-410 (415)
132 2ecf_A Dipeptidyl peptidase IV 99.9 5E-25 1.7E-29 253.5 35.0 194 330-537 211-459 (741)
133 2hqs_A Protein TOLB; TOLB, PAL 99.9 7.4E-25 2.5E-29 232.1 33.4 238 262-519 159-410 (415)
134 1xfd_A DIP, dipeptidyl aminope 99.9 8.2E-24 2.8E-28 242.8 27.7 353 31-525 17-428 (723)
135 2z3z_A Dipeptidyl aminopeptida 99.9 1.3E-22 4.5E-27 231.9 36.8 216 305-535 233-474 (706)
136 3u4y_A Uncharacterized protein 99.9 2.6E-22 8.8E-27 206.7 34.2 276 247-538 5-305 (331)
137 2ecf_A Dipeptidyl peptidase IV 99.9 8.4E-23 2.9E-27 235.0 31.8 356 2-453 50-459 (741)
138 3vgz_A Uncharacterized protein 99.9 1.7E-21 5.8E-26 202.5 37.5 271 240-527 41-334 (353)
139 1pby_B Quinohemoprotein amine 99.9 6.8E-22 2.3E-26 204.0 32.0 297 2-463 3-320 (337)
140 2z3z_A Dipeptidyl aminopeptida 99.9 9.1E-22 3.1E-26 224.9 33.9 336 3-413 38-437 (706)
141 1ri6_A Putative isomerase YBHE 99.9 3E-21 1E-25 199.6 34.6 294 2-434 7-334 (343)
142 1pby_B Quinohemoprotein amine 99.9 7.2E-22 2.5E-26 203.8 29.5 267 253-539 2-312 (337)
143 2ojh_A Uncharacterized protein 99.9 1.8E-22 6E-27 204.1 23.6 255 258-528 18-293 (297)
144 3u4y_A Uncharacterized protein 99.9 4.2E-21 1.4E-25 197.5 33.5 276 2-359 12-304 (331)
145 1ri6_A Putative isomerase YBHE 99.9 4.9E-21 1.7E-25 198.1 33.6 297 46-477 7-335 (343)
146 1xfd_A DIP, dipeptidyl aminope 99.9 1.9E-21 6.4E-26 223.1 30.2 369 3-460 31-450 (723)
147 3vgz_A Uncharacterized protein 99.9 3.2E-20 1.1E-24 192.8 36.6 217 254-486 103-335 (353)
148 2ojh_A Uncharacterized protein 99.9 1.4E-21 4.9E-26 197.3 25.3 256 5-444 17-293 (297)
149 3o4h_A Acylamino-acid-releasin 99.9 8.7E-21 3E-25 211.3 24.3 182 292-495 117-315 (582)
150 1z68_A Fibroblast activation p 99.9 1.5E-20 5E-25 215.4 26.8 187 308-503 225-451 (719)
151 3hfq_A Uncharacterized protein 99.9 2.6E-19 9E-24 185.4 33.8 265 261-536 15-316 (347)
152 3hfq_A Uncharacterized protein 99.9 7.3E-19 2.5E-23 182.0 35.8 285 7-457 13-323 (347)
153 3o4h_A Acylamino-acid-releasin 99.9 3E-20 1E-24 206.9 26.8 270 239-537 21-315 (582)
154 1jmx_B Amine dehydrogenase; ox 99.8 5.9E-19 2E-23 182.9 30.3 273 250-539 9-327 (349)
155 2oit_A Nucleoporin 214KDA; NH2 99.8 2.7E-20 9.1E-25 197.6 20.4 221 307-537 23-278 (434)
156 3scy_A Hypothetical bacterial 99.8 5.2E-18 1.8E-22 176.7 36.7 303 7-473 24-360 (361)
157 3scy_A Hypothetical bacterial 99.8 2.7E-18 9.3E-23 178.8 33.4 278 253-536 14-336 (361)
158 1z68_A Fibroblast activation p 99.8 1.4E-19 4.7E-24 207.3 24.9 362 6-461 32-451 (719)
159 1jmx_B Amine dehydrogenase; ox 99.8 2.9E-18 1E-22 177.6 30.1 292 35-463 4-335 (349)
160 2oiz_A Aromatic amine dehydrog 99.8 6.9E-18 2.4E-22 174.6 32.3 297 52-477 29-360 (361)
161 2oit_A Nucleoporin 214KDA; NH2 99.8 3.3E-19 1.1E-23 189.2 21.5 247 284-536 38-332 (434)
162 3pe7_A Oligogalacturonate lyas 99.8 2.9E-18 1E-22 180.6 27.5 321 11-493 11-380 (388)
163 2oiz_A Aromatic amine dehydrog 99.8 1.8E-17 6.2E-22 171.5 32.8 291 8-435 29-360 (361)
164 3pe7_A Oligogalacturonate lyas 99.8 6.6E-18 2.3E-22 177.9 28.7 230 292-536 88-381 (388)
165 4a5s_A Dipeptidyl peptidase 4 99.8 6.2E-17 2.1E-21 185.1 37.3 373 31-461 17-457 (740)
166 1jof_A Carboxy-CIS,CIS-muconat 99.8 1.4E-17 4.9E-22 173.3 28.1 274 254-537 4-341 (365)
167 1qks_A Cytochrome CD1 nitrite 99.8 2.1E-15 7.1E-20 163.7 43.0 338 2-462 169-547 (567)
168 1qks_A Cytochrome CD1 nitrite 99.8 1.9E-15 6.4E-20 164.1 41.6 332 38-504 161-547 (567)
169 3c5m_A Oligogalacturonate lyas 99.8 6.7E-18 2.3E-22 178.3 21.8 320 12-499 12-388 (396)
170 3c5m_A Oligogalacturonate lyas 99.8 2E-17 6.9E-22 174.6 21.9 248 250-539 90-386 (396)
171 4a5s_A Dipeptidyl peptidase 4 99.8 7.3E-16 2.5E-20 176.2 35.0 356 76-538 18-450 (740)
172 1jof_A Carboxy-CIS,CIS-muconat 99.8 9.3E-16 3.2E-20 159.5 31.9 243 240-496 40-342 (365)
173 3fvz_A Peptidyl-glycine alpha- 99.7 1.1E-15 3.9E-20 156.2 30.8 229 307-537 69-322 (329)
174 1q7f_A NHL, brain tumor CG1071 99.7 4.2E-15 1.4E-19 148.9 32.6 238 280-537 27-280 (286)
175 3azo_A Aminopeptidase; POP fam 99.7 4.6E-16 1.6E-20 176.2 28.0 295 234-538 18-370 (662)
176 3azo_A Aminopeptidase; POP fam 99.7 1.2E-15 4E-20 172.9 28.4 311 25-464 18-380 (662)
177 1q7f_A NHL, brain tumor CG1071 99.7 4.3E-14 1.5E-18 141.5 32.1 239 238-496 28-281 (286)
178 2gop_A Trilobed protease; beta 99.7 3.6E-14 1.2E-18 146.6 31.9 241 261-536 42-330 (347)
179 3e5z_A Putative gluconolactona 99.7 1.9E-14 6.4E-19 145.0 28.9 243 277-537 22-286 (296)
180 3fvz_A Peptidyl-glycine alpha- 99.7 3.9E-14 1.3E-18 144.7 29.2 241 239-495 23-322 (329)
181 2dg1_A DRP35, lactonase; beta 99.7 6E-14 2E-18 144.0 30.0 267 242-527 8-300 (333)
182 2gop_A Trilobed protease; beta 99.7 1.1E-13 3.7E-18 143.0 31.7 174 306-507 151-341 (347)
183 3dsm_A Uncharacterized protein 99.6 1.5E-13 5E-18 140.2 30.8 257 260-536 15-301 (328)
184 3no2_A Uncharacterized protein 99.6 1.2E-13 4.3E-18 136.2 28.0 211 298-525 6-231 (276)
185 2z2n_A Virginiamycin B lyase; 99.6 5.4E-12 1.8E-16 127.0 40.6 279 239-538 14-296 (299)
186 2xdw_A Prolyl endopeptidase; a 99.6 1.9E-13 6.4E-18 155.6 32.7 246 281-539 123-416 (710)
187 1rwi_B Serine/threonine-protei 99.6 1.3E-13 4.3E-18 136.8 25.5 241 284-539 25-266 (270)
188 2mad_H Methylamine dehydrogena 99.6 4E-12 1.4E-16 131.2 37.3 295 37-460 27-357 (373)
189 3sjl_D Methylamine dehydrogena 99.6 6.7E-13 2.3E-17 134.5 30.6 311 36-475 38-384 (386)
190 2dg1_A DRP35, lactonase; beta 99.6 3.8E-13 1.3E-17 137.9 28.7 278 31-444 6-301 (333)
191 3dsm_A Uncharacterized protein 99.6 9.3E-13 3.2E-17 134.2 30.8 282 8-430 15-319 (328)
192 4a2l_A BT_4663, two-component 99.6 5.4E-10 1.9E-14 128.7 55.8 447 30-537 87-571 (795)
193 3e5z_A Putative gluconolactona 99.6 1.2E-12 4E-17 131.7 29.2 237 239-498 27-289 (296)
194 4a2l_A BT_4663, two-component 99.6 9.4E-10 3.2E-14 126.7 57.0 469 10-537 107-614 (795)
195 2xdw_A Prolyl endopeptidase; a 99.6 1.9E-12 6.5E-17 147.3 33.3 184 262-456 208-417 (710)
196 3no2_A Uncharacterized protein 99.6 2.2E-12 7.6E-17 127.2 29.4 241 251-505 4-262 (276)
197 2bkl_A Prolyl endopeptidase; m 99.6 3.1E-13 1.1E-17 153.2 25.6 179 307-498 202-400 (695)
198 2bkl_A Prolyl endopeptidase; m 99.6 2.7E-13 9.3E-18 153.7 23.8 275 251-539 78-399 (695)
199 2z2n_A Virginiamycin B lyase; 99.5 6.5E-11 2.2E-15 119.0 38.8 282 26-454 10-296 (299)
200 3sjl_D Methylamine dehydrogena 99.5 6.9E-12 2.3E-16 127.1 29.0 281 9-325 58-372 (386)
201 1rwi_B Serine/threonine-protei 99.5 2.7E-12 9.2E-17 127.1 25.4 241 241-497 25-266 (270)
202 2qc5_A Streptogramin B lactona 99.5 1.9E-10 6.4E-15 115.7 38.9 275 239-535 19-298 (300)
203 3c75_H MADH, methylamine dehyd 99.5 7E-12 2.4E-16 129.6 27.2 280 54-460 99-409 (426)
204 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 1.5E-11 5.2E-16 124.7 29.4 241 284-537 19-299 (314)
205 2mad_H Methylamine dehydrogena 99.5 1.3E-10 4.5E-15 119.9 36.2 269 250-540 30-353 (373)
206 3v9f_A Two-component system se 99.5 3.5E-08 1.2E-12 113.3 59.1 454 31-537 66-568 (781)
207 3v9f_A Two-component system se 99.5 3.7E-08 1.3E-12 113.1 57.8 474 5-537 82-611 (781)
208 1xip_A Nucleoporin NUP159; bet 99.5 2.1E-12 7.1E-17 131.6 19.7 182 329-525 39-232 (388)
209 1yr2_A Prolyl oligopeptidase; 99.5 1.6E-11 5.4E-16 140.3 28.8 242 283-539 163-443 (741)
210 3g4e_A Regucalcin; six bladed 99.5 1.4E-10 4.7E-15 116.4 32.4 221 292-525 20-260 (297)
211 2qc5_A Streptogramin B lactona 99.4 1.1E-09 3.8E-14 109.9 37.4 172 306-493 124-298 (300)
212 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 1.1E-10 3.8E-15 118.3 30.0 238 240-495 18-299 (314)
213 3c75_H MADH, methylamine dehyd 99.4 1.6E-10 5.6E-15 119.4 30.3 279 10-323 99-409 (426)
214 3hrp_A Uncharacterized protein 99.4 3.3E-10 1.1E-14 118.6 32.1 236 284-535 132-408 (409)
215 3q7m_A Lipoprotein YFGL, BAMB; 99.4 1.4E-09 4.9E-14 113.2 34.7 214 254-492 145-375 (376)
216 3q7m_A Lipoprotein YFGL, BAMB; 99.4 1E-09 3.6E-14 114.3 33.6 256 253-534 104-375 (376)
217 3dr2_A Exported gluconolactona 99.4 1.8E-10 6.2E-15 116.0 26.1 231 282-532 44-302 (305)
218 3hxj_A Pyrrolo-quinoline quino 99.4 3.7E-11 1.3E-15 122.8 21.3 219 296-538 107-325 (330)
219 2ghs_A AGR_C_1268P; regucalcin 99.4 1.6E-09 5.6E-14 110.0 33.2 218 292-526 56-291 (326)
220 3g4e_A Regucalcin; six bladed 99.4 1.3E-09 4.3E-14 109.3 31.9 225 242-484 15-261 (297)
221 1mda_H Methylamine dehydrogena 99.4 6.2E-11 2.1E-15 120.6 21.7 164 294-464 172-357 (368)
222 3hrp_A Uncharacterized protein 99.3 1.6E-09 5.5E-14 113.4 31.9 153 283-451 219-408 (409)
223 1kb0_A Quinohemoprotein alcoho 99.3 9E-10 3.1E-14 123.1 31.5 269 252-536 128-566 (677)
224 1xip_A Nucleoporin NUP159; bet 99.3 3.1E-11 1.1E-15 122.9 17.3 172 284-483 39-232 (388)
225 1yr2_A Prolyl oligopeptidase; 99.3 5.3E-10 1.8E-14 127.6 28.7 242 240-498 163-444 (741)
226 3hxj_A Pyrrolo-quinoline quino 99.3 4E-11 1.4E-15 122.5 17.5 216 254-495 109-324 (330)
227 1mda_H Methylamine dehydrogena 99.3 2.5E-10 8.4E-15 116.2 22.3 280 11-336 47-365 (368)
228 1yiq_A Quinohemoprotein alcoho 99.3 1.7E-09 5.7E-14 121.1 30.1 258 252-522 121-533 (689)
229 1kb0_A Quinohemoprotein alcoho 99.3 7.6E-10 2.6E-14 123.7 26.8 280 252-540 77-510 (677)
230 2qe8_A Uncharacterized protein 99.3 2.3E-10 8E-15 117.3 20.6 190 243-450 123-318 (343)
231 2ghs_A AGR_C_1268P; regucalcin 99.3 1.4E-08 4.6E-13 103.2 32.5 221 243-485 52-292 (326)
232 1yiq_A Quinohemoprotein alcoho 99.2 1E-09 3.4E-14 123.0 26.1 286 252-541 70-509 (689)
233 3iuj_A Prolyl endopeptidase; h 99.2 9.8E-10 3.4E-14 124.1 24.1 153 292-456 241-408 (693)
234 3iuj_A Prolyl endopeptidase; h 99.2 2.5E-09 8.5E-14 120.8 27.2 243 281-538 127-406 (693)
235 1npe_A Nidogen, entactin; glyc 99.1 1.4E-07 4.7E-12 92.7 32.9 249 254-519 3-263 (267)
236 2qe8_A Uncharacterized protein 99.1 3E-09 1E-13 109.0 21.6 261 240-529 17-313 (343)
237 3dr2_A Exported gluconolactona 99.1 2.1E-08 7.3E-13 100.8 26.8 226 241-489 46-301 (305)
238 2ece_A 462AA long hypothetical 99.1 6.7E-08 2.3E-12 98.4 29.5 220 294-525 93-399 (462)
239 2hz6_A Endoplasmic reticulum t 99.1 3E-11 1E-15 125.0 4.4 205 295-519 8-216 (369)
240 2hz6_A Endoplasmic reticulum t 99.1 9.1E-13 3.1E-17 136.4 -7.3 257 251-536 8-278 (369)
241 1fwx_A Nitrous oxide reductase 99.1 1.4E-08 4.6E-13 107.3 22.9 230 295-538 100-432 (595)
242 3s94_A LRP-6, low-density lipo 99.0 6.6E-05 2.3E-09 82.4 54.9 477 7-538 15-552 (619)
243 1kv9_A Type II quinohemoprotei 99.0 1.3E-07 4.3E-12 105.6 28.9 257 253-525 118-520 (668)
244 1npe_A Nidogen, entactin; glyc 99.0 3.2E-06 1.1E-10 82.8 34.5 223 241-477 37-263 (267)
245 1kv9_A Type II quinohemoprotei 98.9 8.9E-08 3E-12 106.9 24.3 280 252-540 66-491 (668)
246 2ece_A 462AA long hypothetical 98.9 1.4E-06 4.9E-11 88.7 30.6 218 251-483 95-399 (462)
247 3s94_A LRP-6, low-density lipo 98.9 0.00017 5.7E-09 79.2 50.2 429 4-497 100-553 (619)
248 4a0p_A LRP6, LRP-6, low-densit 98.9 0.00023 7.8E-09 78.2 56.1 439 6-502 98-556 (628)
249 2ad6_A Methanol dehydrogenase 98.9 7.7E-07 2.6E-11 97.1 28.3 283 252-540 62-497 (571)
250 2iwa_A Glutamine cyclotransfer 98.8 1.8E-06 6.1E-11 82.7 24.9 194 329-537 22-237 (266)
251 1fwx_A Nitrous oxide reductase 98.8 5.2E-07 1.8E-11 95.4 22.8 226 299-537 17-361 (595)
252 4a0p_A LRP6, LRP-6, low-densit 98.8 0.00043 1.5E-08 76.0 62.9 471 8-538 13-550 (628)
253 1flg_A Protein (quinoprotein e 98.8 3.7E-06 1.3E-10 91.8 30.0 132 390-522 331-544 (582)
254 3nol_A Glutamine cyclotransfer 98.8 2.4E-06 8.1E-11 80.6 24.3 180 330-526 45-244 (262)
255 1w6s_A Methanol dehydrogenase 98.8 1.1E-05 3.7E-10 87.9 32.8 174 307-482 278-534 (599)
256 3ei3_A DNA damage-binding prot 98.7 0.0012 4E-08 77.6 58.5 467 10-538 492-1063(1158)
257 2ad6_A Methanol dehydrogenase 98.7 2.7E-06 9.2E-11 92.8 26.9 254 252-522 115-522 (571)
258 1w6s_A Methanol dehydrogenase 98.7 5E-06 1.7E-10 90.5 28.3 283 252-540 62-506 (599)
259 2iwa_A Glutamine cyclotransfer 98.7 5.8E-06 2E-10 79.1 24.9 194 285-496 23-238 (266)
260 1flg_A Protein (quinoprotein e 98.7 7.1E-06 2.4E-10 89.6 28.2 281 253-540 69-519 (582)
261 3nol_A Glutamine cyclotransfer 98.7 8.5E-06 2.9E-10 76.8 24.3 181 285-484 45-244 (262)
262 3v64_C Agrin; beta propeller, 98.7 3.9E-05 1.3E-09 78.1 30.9 236 253-503 45-283 (349)
263 3nok_A Glutaminyl cyclase; bet 98.7 6.7E-06 2.3E-10 77.4 22.8 177 330-525 57-253 (268)
264 3v65_B Low-density lipoprotein 98.6 4.1E-05 1.4E-09 79.2 31.2 247 253-514 88-337 (386)
265 1ijq_A LDL receptor, low-densi 98.6 0.00014 4.8E-09 72.8 34.4 233 254-503 3-246 (316)
266 3ei3_A DNA damage-binding prot 98.6 0.0023 8E-08 75.1 55.6 388 9-453 531-999 (1158)
267 3mbr_X Glutamine cyclotransfer 98.6 2.4E-05 8.4E-10 73.1 25.3 189 319-526 11-223 (243)
268 3v64_C Agrin; beta propeller, 98.6 0.00014 4.8E-09 73.9 33.0 248 204-472 45-294 (349)
269 3nok_A Glutaminyl cyclase; bet 98.6 1.2E-05 4.1E-10 75.8 22.0 173 296-484 64-254 (268)
270 3v65_B Low-density lipoprotein 98.6 0.00012 3.9E-09 75.8 31.9 250 203-473 87-338 (386)
271 2fp8_A Strictosidine synthase; 98.6 3.9E-05 1.4E-09 77.3 27.4 231 292-536 26-312 (322)
272 3p5b_L Low density lipoprotein 98.5 0.0005 1.7E-08 71.2 36.1 247 253-514 84-339 (400)
273 3sov_A LRP-6, low-density lipo 98.5 0.00015 5.3E-09 72.3 29.6 236 254-503 6-246 (318)
274 1ijq_A LDL receptor, low-densi 98.5 0.00082 2.8E-08 67.2 34.7 236 206-462 4-247 (316)
275 2fp8_A Strictosidine synthase; 98.5 0.00017 5.6E-09 72.7 29.7 235 242-495 21-313 (322)
276 3mbr_X Glutamine cyclotransfer 98.5 8E-05 2.7E-09 69.6 24.7 180 285-484 23-223 (243)
277 1bpo_A Protein (clathrin); cla 98.5 0.0017 6E-08 65.0 41.2 295 262-577 48-387 (494)
278 3qqz_A Putative uncharacterize 98.5 0.00014 4.6E-09 69.2 26.5 201 323-535 22-251 (255)
279 2p4o_A Hypothetical protein; p 98.5 0.0004 1.4E-08 69.2 31.6 137 296-443 127-278 (306)
280 3p5b_L Low density lipoprotein 98.4 0.0018 6.2E-08 67.0 37.0 250 203-473 83-340 (400)
281 1k3i_A Galactose oxidase precu 98.4 2.5E-05 8.7E-10 87.3 23.2 273 244-526 190-530 (656)
282 2p4o_A Hypothetical protein; p 98.4 0.00041 1.4E-08 69.2 29.2 225 285-528 34-279 (306)
283 3qqz_A Putative uncharacterize 98.3 0.00026 8.9E-09 67.3 24.5 208 233-451 20-251 (255)
284 3sov_A LRP-6, low-density lipo 98.3 0.0016 5.6E-08 64.8 31.7 249 205-472 6-257 (318)
285 3tc9_A Hypothetical hydrolase; 98.3 0.00061 2.1E-08 71.3 28.3 232 292-536 144-429 (430)
286 3m0c_C LDL receptor, low-densi 98.2 0.0014 4.8E-08 73.6 32.5 233 254-502 397-639 (791)
287 4hw6_A Hypothetical protein, I 98.2 0.001 3.5E-08 69.6 27.8 230 292-536 146-432 (433)
288 1k3i_A Galactose oxidase precu 98.1 8.8E-05 3E-09 82.9 19.2 236 292-537 193-497 (656)
289 3m0c_C LDL receptor, low-densi 98.1 0.0078 2.7E-07 67.6 33.9 238 205-463 397-642 (791)
290 3ott_A Two-component system se 98.1 0.032 1.1E-06 63.4 56.3 465 11-535 122-624 (758)
291 2xbg_A YCF48-like protein; pho 98.0 0.012 4E-07 59.1 31.7 268 240-535 36-320 (327)
292 2xe4_A Oligopeptidase B; hydro 98.0 0.00055 1.9E-08 77.6 24.2 197 285-493 176-398 (751)
293 3amr_A 3-phytase; beta-propell 98.0 0.002 6.7E-08 63.6 24.6 199 299-503 42-272 (355)
294 2xe4_A Oligopeptidase B; hydro 98.0 0.00021 7.3E-09 80.9 20.5 191 329-533 175-394 (751)
295 3kya_A Putative phosphatase; s 98.0 0.0035 1.2E-07 65.6 27.3 248 285-541 141-479 (496)
296 3tc9_A Hypothetical hydrolase; 98.0 0.003 1E-07 66.1 26.6 238 241-493 138-428 (430)
297 3ott_A Two-component system se 97.9 0.056 1.9E-06 61.4 56.1 460 10-537 82-586 (758)
298 1n7d_A LDL receptor, low-densi 97.9 5.2E-05 1.8E-09 84.7 11.8 240 260-514 384-633 (699)
299 2xzh_A Clathrin heavy chain 1; 97.9 0.023 8E-07 54.8 34.0 260 262-542 49-337 (365)
300 4hw6_A Hypothetical protein, I 97.9 0.0072 2.5E-07 63.1 27.0 238 241-493 140-431 (433)
301 1xi4_A Clathrin heavy chain; a 97.8 0.0085 2.9E-07 69.5 28.5 294 262-577 48-387 (1630)
302 3kya_A Putative phosphatase; s 97.8 0.011 3.8E-07 61.8 27.5 254 241-500 140-480 (496)
303 3amr_A 3-phytase; beta-propell 97.8 0.012 4E-07 58.1 24.7 203 251-461 39-272 (355)
304 1n7d_A LDL receptor, low-densi 97.7 0.0001 3.5E-09 82.4 11.4 221 240-473 406-634 (699)
305 2xzh_A Clathrin heavy chain 1; 97.7 0.036 1.2E-06 53.5 32.8 162 292-455 159-334 (365)
306 2p9w_A MAL S 1 allergenic prot 97.7 0.004 1.4E-07 60.8 19.9 195 330-534 15-262 (334)
307 2xbg_A YCF48-like protein; pho 97.7 0.057 2E-06 53.9 33.5 229 239-492 79-319 (327)
308 2vpj_A Kelch-like protein 12; 97.5 0.0088 3E-07 59.2 21.2 218 307-537 31-278 (301)
309 2ism_A Putative oxidoreductase 97.5 0.085 2.9E-06 53.3 27.9 228 284-525 32-333 (352)
310 2p9w_A MAL S 1 allergenic prot 97.5 0.011 3.7E-07 57.8 19.4 156 380-536 12-214 (334)
311 1bpo_A Protein (clathrin); cla 97.4 0.13 4.3E-06 51.9 32.4 247 158-431 46-309 (494)
312 2xn4_A Kelch-like protein 2; s 97.4 0.016 5.4E-07 57.4 20.7 223 298-538 17-277 (302)
313 3ii7_A Kelch-like protein 7; p 97.3 0.022 7.7E-07 56.3 21.2 225 297-538 12-273 (306)
314 2vpj_A Kelch-like protein 12; 97.2 0.027 9.3E-07 55.6 20.3 217 262-498 31-281 (301)
315 2xn4_A Kelch-like protein 2; s 97.1 0.051 1.7E-06 53.6 21.1 218 262-499 30-280 (302)
316 3sre_A PON1, serum paraoxonase 97.1 0.13 4.5E-06 51.4 23.5 170 348-527 81-287 (355)
317 4asc_A Kelch repeat and BTB do 97.1 0.035 1.2E-06 55.2 19.3 210 299-527 7-253 (315)
318 2g8s_A Glucose/sorbosone dehyd 97.0 0.27 9.3E-06 49.5 25.5 240 285-535 20-350 (353)
319 3sre_A PON1, serum paraoxonase 97.0 0.13 4.6E-06 51.3 22.5 189 305-503 81-308 (355)
320 3ii7_A Kelch-like protein 7; p 96.9 0.095 3.3E-06 51.7 21.2 223 254-498 14-275 (306)
321 3pbp_A Nucleoporin NUP82; beta 96.9 0.062 2.1E-06 54.1 18.7 144 387-533 27-208 (452)
322 1zgk_A Kelch-like ECH-associat 96.9 0.046 1.6E-06 54.1 18.2 223 297-537 25-287 (308)
323 3sbq_A Nitrous-oxide reductase 96.9 0.57 2E-05 48.8 26.3 264 254-525 72-453 (638)
324 3a9g_A Putative uncharacterize 96.8 0.51 1.8E-05 47.5 30.3 233 284-525 30-330 (354)
325 2woz_A Kelch repeat and BTB do 96.8 0.12 4.2E-06 51.3 20.3 141 391-537 109-287 (318)
326 4asc_A Kelch repeat and BTB do 96.7 0.13 4.5E-06 51.0 20.2 226 254-499 7-281 (315)
327 2ism_A Putative oxidoreductase 96.7 0.62 2.1E-05 46.8 26.5 232 241-483 32-333 (352)
328 1zgk_A Kelch-like ECH-associat 96.6 0.11 3.7E-06 51.4 18.9 226 251-498 24-290 (308)
329 2be1_A Serine/threonine-protei 96.6 0.039 1.3E-06 54.6 14.8 232 299-540 12-300 (339)
330 1xi4_A Clathrin heavy chain; a 96.5 0.29 9.9E-06 57.2 22.5 243 197-455 72-333 (1630)
331 3pbp_A Nucleoporin NUP82; beta 96.4 0.3 1E-05 49.2 19.5 140 306-448 40-207 (452)
332 2woz_A Kelch repeat and BTB do 96.4 0.3 1E-05 48.4 20.1 218 263-500 25-292 (318)
333 3das_A Putative oxidoreductase 96.3 0.96 3.3E-05 44.9 32.1 239 282-525 31-326 (347)
334 1tl2_A L10, protein (tachylect 96.3 0.058 2E-06 48.9 12.4 145 381-536 41-207 (236)
335 3sbq_A Nitrous-oxide reductase 95.8 1.6 5.4E-05 45.6 22.0 71 465-536 323-407 (638)
336 2uvk_A YJHT; unknown function, 95.6 0.19 6.6E-06 50.8 15.1 134 402-538 168-343 (357)
337 3qhy_B Beta-lactamase inhibito 95.5 1.6 5.6E-05 42.0 20.5 223 241-496 25-247 (282)
338 2uvk_A YJHT; unknown function, 95.5 0.38 1.3E-05 48.5 16.8 110 391-502 200-349 (357)
339 1cru_A Protein (soluble quinop 95.5 0.91 3.1E-05 47.4 19.6 104 381-484 27-163 (454)
340 3qhy_B Beta-lactamase inhibito 95.2 0.82 2.8E-05 44.2 17.2 206 306-537 41-246 (282)
341 2g8s_A Glucose/sorbosone dehyd 95.0 3.4 0.00012 41.4 25.2 61 380-440 270-340 (353)
342 2zwa_A Leucine carboxyl methyl 94.8 1.1 3.7E-05 49.9 19.0 219 297-526 398-674 (695)
343 2be1_A Serine/threonine-protei 94.7 2.8 9.4E-05 41.4 19.4 121 46-178 12-139 (339)
344 1tl2_A L10, protein (tachylect 94.7 0.4 1.4E-05 43.5 12.1 131 392-531 4-157 (236)
345 3a9g_A Putative uncharacterize 94.3 4.9 0.00017 40.2 30.4 235 240-483 29-330 (354)
346 2zwa_A Leucine carboxyl methyl 94.1 2.5 8.6E-05 46.9 19.9 197 251-456 397-638 (695)
347 3uc1_A DNA gyrase subunit A; D 92.4 8.9 0.0003 37.6 22.4 251 150-411 3-279 (327)
348 1cru_A Protein (soluble quinop 92.3 12 0.00041 38.8 28.6 110 284-400 28-163 (454)
349 4gq2_M Nucleoporin NUP120; bet 91.5 19 0.00065 41.4 22.7 38 424-461 237-274 (950)
350 3s25_A Hypothetical 7-bladed b 90.8 12 0.00043 36.1 25.4 209 251-495 24-255 (302)
351 3das_A Putative oxidoreductase 87.3 24 0.00082 34.8 26.6 81 23-105 24-116 (347)
352 3kci_A Probable E3 ubiquitin-p 86.6 29 0.00098 35.0 32.6 291 151-453 11-345 (389)
353 3kci_A Probable E3 ubiquitin-p 85.7 32 0.0011 34.7 31.8 248 152-410 64-344 (389)
354 3s25_A Hypothetical 7-bladed b 84.2 31 0.0011 33.3 27.5 185 262-482 88-279 (302)
355 3uc1_A DNA gyrase subunit A; D 83.5 35 0.0012 33.3 23.9 232 299-535 5-277 (327)
356 3dwl_G Actin-related protein 2 82.7 3.4 0.00012 34.5 6.7 90 555-645 40-139 (152)
357 3b7f_A Glycosyl hydrolase, BNR 82.3 44 0.0015 33.6 27.7 131 382-515 233-391 (394)
358 3no0_A DNA gyrase subunit A; D 81.4 37 0.0013 32.2 25.0 205 190-410 23-245 (276)
359 1k8k_G P16, ARP2/3 complex 16 81.3 8.1 0.00028 32.3 8.5 87 555-642 39-135 (151)
360 2wg3_C Hedgehog-interacting pr 81.3 54 0.0018 33.9 30.7 245 285-536 16-370 (463)
361 4hvt_A Ritya.17583.B, post-pro 80.8 73 0.0025 35.1 20.5 233 291-536 136-429 (711)
362 1suu_A DNA gyrase subunit A; t 79.2 48 0.0016 32.1 26.1 228 299-531 10-277 (312)
363 3mvd_K Regulator of chromosome 78.4 62 0.0021 32.9 30.1 243 152-410 86-373 (423)
364 3no0_A DNA gyrase subunit A; D 77.4 50 0.0017 31.3 24.1 217 24-270 14-245 (276)
365 3l6v_A GYRA, DNA gyrase subuni 76.6 64 0.0022 32.1 24.2 203 151-360 8-266 (370)
366 1sqj_A OXG-RCBH, oligoxylogluc 75.2 1.1E+02 0.0038 34.2 24.6 150 283-443 15-190 (789)
367 1zi0_A DNA gyrase subunit A; b 74.4 64 0.0022 31.1 25.9 232 299-535 5-275 (307)
368 1suu_A DNA gyrase subunit A; t 73.7 67 0.0023 31.0 27.4 203 150-360 8-232 (312)
369 4fhn_B Nucleoporin NUP120; pro 71.6 1.6E+02 0.0056 34.6 19.7 38 466-503 239-276 (1139)
370 1wp5_A Topoisomerase IV; broke 71.6 77 0.0026 30.8 27.4 250 151-411 6-277 (323)
371 4gq2_M Nucleoporin NUP120; bet 71.5 1.5E+02 0.0051 34.0 23.7 38 466-503 237-274 (950)
372 3b7f_A Glycosyl hydrolase, BNR 69.3 97 0.0033 31.0 30.0 135 329-473 233-391 (394)
373 1zi0_A DNA gyrase subunit A; b 68.8 86 0.0029 30.2 26.8 252 151-411 4-277 (307)
374 4fhn_B Nucleoporin NUP120; pro 62.8 48 0.0016 39.1 12.7 38 424-461 239-276 (1139)
375 3q6k_A 43.2 kDa salivary prote 61.1 1.4E+02 0.0047 29.8 22.0 176 262-441 123-342 (381)
376 4d9s_A UVB-resistance protein 60.8 1.4E+02 0.0049 30.0 38.3 285 152-452 27-356 (406)
377 2zux_A YESW protein; beta-prop 60.7 1.7E+02 0.0058 30.8 28.4 268 239-537 178-532 (591)
378 1wp5_A Topoisomerase IV; broke 60.2 1.3E+02 0.0044 29.2 23.8 232 299-536 7-276 (323)
379 3l6v_A GYRA, DNA gyrase subuni 60.0 1.4E+02 0.0048 29.6 24.8 233 294-533 5-312 (370)
380 3s6n_2 SurviVal of motor neuro 58.1 13 0.00045 35.1 5.4 45 600-644 179-223 (280)
381 4a9v_A PHOX; hydrolase, beta-p 52.1 53 0.0018 34.7 9.2 62 31-93 476-549 (592)
382 4d9s_A UVB-resistance protein 51.1 2E+02 0.007 28.8 39.4 279 241-537 17-357 (406)
383 3zwu_A Alkaline phosphatase PH 49.9 39 0.0013 36.1 8.0 60 32-92 477-548 (592)
384 3f7f_A Nucleoporin NUP120; nuc 48.3 27 0.00093 38.0 6.6 37 76-114 223-259 (729)
385 3al9_A Plexin-A2; beta-propell 43.8 62 0.0021 34.2 8.4 71 30-100 399-476 (539)
386 3zwu_A Alkaline phosphatase PH 43.2 69 0.0023 34.2 8.7 59 382-440 477-548 (592)
387 4a9v_A PHOX; hydrolase, beta-p 42.8 89 0.0031 33.0 9.2 61 465-525 476-549 (592)
388 1q47_A Semaphorin 3A; beta pro 42.3 87 0.003 32.6 9.2 69 32-100 405-487 (495)
389 2wg3_C Hedgehog-interacting pr 41.0 3.1E+02 0.011 28.1 27.7 238 241-483 15-354 (463)
390 3f7f_A Nucleoporin NUP120; nuc 37.1 41 0.0014 36.6 5.8 37 466-504 223-259 (729)
391 3mvd_K Regulator of chromosome 34.7 3.7E+02 0.012 27.0 37.8 277 201-495 32-374 (423)
392 2vxg_A LD41624, GE-1, CG6181-P 33.4 1.5E+02 0.0051 24.5 7.3 104 557-666 6-109 (139)
393 1sqj_A OXG-RCBH, oligoxylogluc 33.3 5.4E+02 0.019 28.6 26.9 155 239-401 14-190 (789)
394 3q6k_A 43.2 kDa salivary prote 32.9 3.8E+02 0.013 26.6 23.2 183 308-525 124-342 (381)
395 1a12_A RCC1, regulator of chro 25.6 5.1E+02 0.017 25.8 32.7 237 196-452 62-364 (413)
396 3mez_B Mannose-specific lectin 24.1 2.6E+02 0.0088 21.8 9.5 25 469-495 60-84 (113)
397 4hvt_A Ritya.17583.B, post-pro 24.0 7.3E+02 0.025 27.1 21.4 95 260-358 318-429 (711)
398 4gz8_A Semaphorin-3A; multi-do 23.2 1.7E+02 0.0059 31.7 7.7 70 31-100 412-495 (667)
399 3mez_B Mannose-specific lectin 22.1 2.8E+02 0.0097 21.6 9.9 25 426-452 59-83 (113)
400 1olz_A Semaphorin 4D; developm 21.3 4.2E+02 0.014 28.7 10.3 69 32-100 398-477 (663)
No 1
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=3.9e-60 Score=530.53 Aligned_cols=489 Identities=27% Similarity=0.463 Sum_probs=406.1
Q ss_pred EEEeecCCCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEE
Q 004214 2 FALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMA 81 (768)
Q Consensus 2 ~latg~~dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~ 81 (768)
+||+|+.|+.|+|||. ++++++.|.||.+.|++|+|+||+++ ||+++.|++|+|||+ +++++..+.+|.+.|.+++
T Consensus 30 ~las~~~d~~v~iWd~-~~~~~~~l~gh~~~V~~l~fspdg~~--las~~~d~~i~vWd~-~~~~~~~~~~~~~~v~~~~ 105 (577)
T 2ymu_A 30 TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQT--IASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVA 105 (577)
T ss_dssp CEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSE--EEEEETTSCEEEEET-TSCEEEEECCCSSCEEEEE
T ss_pred EEEEEeCCCEEEEEEC-CCCEEEEEeCCCCCEEEEEECCCCCE--EEEEeCCCEEEEEEC-CCCEEEEEECCCCCEEEEE
Confidence 6899999999999995 77889999999999999999999987 999999999999996 7889999999999999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCeeeeeeecceeEee-----------------------------------------
Q 004214 82 ITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEA----------------------------------------- 120 (768)
Q Consensus 82 fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~----------------------------------------- 120 (768)
|+|++++|++++.|+.+++|+...............+..
T Consensus 106 ~s~d~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 185 (577)
T 2ymu_A 106 FSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWG 185 (577)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEE
T ss_pred ECCCCCEEEEEcCCCceeecccccceeeeccCCCCceeeeeeecCCccceecccccceeccccceeeeeeccCCCcceee
Confidence 999999999999999999999866544333333333333
Q ss_pred EEecCCCCCccccccc-----cchh-------------hhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceee
Q 004214 121 VCAIPPGSAFDSFLSS-----YNQQ-------------TIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTI 182 (768)
Q Consensus 121 ~~~~~~~~~~~~~~~~-----~~~~-------------~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~ 182 (768)
+.+.|++..++..... +... .......+.+..+++++.+|.|++|+.....+..
T Consensus 186 ~~~~~~~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~~~~~~-------- 257 (577)
T 2ymu_A 186 VAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQT-------- 257 (577)
T ss_dssp EEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEE--------
T ss_pred eeecCCCCEEEEEcCCCEEEEEeCCCcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEE--------
Confidence 4444444332211000 0000 0000111223456666667777777654432211
Q ss_pred cccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCC
Q 004214 183 SFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIE 262 (768)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~ 262 (768)
...+...+..+.+.|++..+++++.++.+++|+.... ....+.+|...|.+++|++ ++..+++++.++
T Consensus 258 ---~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~--------~~~~~~~h~~~v~~~~~~~-~~~~l~t~~~d~ 325 (577)
T 2ymu_A 258 ---LTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQ--------LLQTLTGHSSSVWGVAFSP-DGQTIASASDDK 325 (577)
T ss_dssp ---ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC--------EEEEECCCSSCEEEEEECT-TSSEEEEEETTS
T ss_pred ---EecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc--------EEEEEecCCCCeEEEEECC-CCCEEEEEeCCC
Confidence 1223466788999999999999999999999986432 3345678999999999985 778999999999
Q ss_pred cEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcE
Q 004214 263 QVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNF 342 (768)
Q Consensus 263 ~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 342 (768)
.|++||.... ....+.+|...+.+++ +.+++.. +++|+.||.|++||. +++.+..+.+|...|.+++|+|+++ +
T Consensus 326 ~i~~w~~~~~-~~~~~~~~~~~v~~~~--~s~~g~~-l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~-~ 399 (577)
T 2ymu_A 326 TVKLWNRNGQ-HLQTLTGHSSSVWGVA--FSPDGQT-IASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQ-T 399 (577)
T ss_dssp CEEEEETTSC-EEEEECCCSSCEEEEE--ECTTSSE-EEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSS-C
T ss_pred eEEEEeCCCC-eeEEEeCCCCCEEEEE--ECCCCCE-EEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCC-E
Confidence 9999997654 4557889999999997 7777776 999999999999995 5677888899999999999999976 7
Q ss_pred EEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccC
Q 004214 343 LVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHK 422 (768)
Q Consensus 343 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 422 (768)
|++++.|+.|++||... ........|...|++++|+|++++|++++.|+.|++||. +++.+..+.+|.
T Consensus 400 l~~~~~d~~v~~~~~~~-----------~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~ 467 (577)
T 2ymu_A 400 IASASDDKTVKLWNRNG-----------QLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHS 467 (577)
T ss_dssp EEEEETTSEEEEECTTC-----------CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCS
T ss_pred EEEEeCCCEEEEEeCCC-----------CEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCC
Confidence 99999999999999642 245567789999999999999999999999999999996 567888899999
Q ss_pred CCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEe
Q 004214 423 RGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATY 502 (768)
Q Consensus 423 ~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 502 (768)
..|++++|+|++++|++++.|+.|++||. +++++..+.+|...|++++|+|+|++|++++.||.|++||. +++++.++
T Consensus 468 ~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~ 545 (577)
T 2ymu_A 468 SSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTL 545 (577)
T ss_dssp SCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEE
T ss_pred CCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEE
Confidence 99999999999999999999999999995 78999999999999999999999999999999999999995 78999999
Q ss_pred ccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004214 503 DKHEDKIWALAVGKKTEMFATGGSDALVNLWH 534 (768)
Q Consensus 503 ~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~ 534 (768)
.+|.+.|++++|+|||++|+|++.||.|++||
T Consensus 546 ~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 546 TGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp ECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred cCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 99999999999999999999999999999996
No 2
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=5e-59 Score=522.08 Aligned_cols=490 Identities=16% Similarity=0.217 Sum_probs=398.4
Q ss_pred EEEeecCCCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCC--eeEEEecCccceeEE
Q 004214 2 FALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK--KCVATLDKHFSRVTS 79 (768)
Q Consensus 2 ~latg~~dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~--~~~~~l~~h~~~V~~ 79 (768)
+||+++ ++.|++||+.++.....|.+|...|++++|+|+|++ ||+|+.||+|+|||+.++ .....+.+|.++|.+
T Consensus 32 ~l~~~~-~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~--lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~ 108 (611)
T 1nr0_A 32 KIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYY--CASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKD 108 (611)
T ss_dssp EEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSE--EEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEE
T ss_pred EEEeCC-CCEEEEecCCCcccCeEecCCCCceEEEEECCCCcE--EEEEeCCCCEEEeECCCCcceeeEeecccCCceEE
Confidence 567776 679999999999889999999999999999999988 999999999999999754 345678899999999
Q ss_pred EEEcCCCCEEEEEeCC----CeEEEEECCCCeeeeeeecc-eeEeeEEecCCCCCccccccccchhhhhcccCCcceEEE
Q 004214 80 MAITSDGSTLISAGRD----KVVNLWDLRDYSCKLTVPTY-EMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFI 154 (768)
Q Consensus 80 l~fs~d~~~L~s~~~d----g~i~vWd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (768)
++|+|+|++|++++.+ +.|++|| .++....+..+ ..+.+++|+|++. ..++
T Consensus 109 v~fs~dg~~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~----------------------~~l~ 164 (611)
T 1nr0_A 109 ISWDSESKRIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAMNSVDFKPSRP----------------------FRII 164 (611)
T ss_dssp EEECTTSCEEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCEEEEEECSSSS----------------------CEEE
T ss_pred EEECCCCCEEEEEECCCCceeEEEEee--CCCCcceecCCCCCceEEEECCCCC----------------------eEEE
Confidence 9999999999999865 3677776 45555555544 4689999999864 1589
Q ss_pred EeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEee
Q 004214 155 TVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKR 234 (768)
Q Consensus 155 ~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~ 234 (768)
+++.|+.|++||..++..... ...+...+..+.|+|++..+++++.|+.+++|+................
T Consensus 165 s~s~D~~v~lwd~~~~~~~~~----------l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~ 234 (611)
T 1nr0_A 165 SGSDDNTVAIFEGPPFKFKST----------FGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLK 234 (611)
T ss_dssp EEETTSCEEEEETTTBEEEEE----------ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSS
T ss_pred EEeCCCeEEEEECCCCeEeee----------eccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeecccccc
Confidence 999999999999877643321 2234567899999999999999999999999997654311000000001
Q ss_pred ecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeee--------------------------------------
Q 004214 235 LVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSY-------------------------------------- 276 (768)
Q Consensus 235 ~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~-------------------------------------- 276 (768)
..+|.+.|.+++|+| ++.+|++++.|+.|++||+.++++..
T Consensus 235 ~~~h~~~V~~v~~sp-dg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~ 313 (611)
T 1nr0_A 235 NVAHSGSVFGLTWSP-DGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPEL 313 (611)
T ss_dssp SCSSSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTT
T ss_pred ccccCCCEEEEEECC-CCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCC
Confidence 127899999999985 78899999999999999998876543
Q ss_pred -----eeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEee-ecccCcEEEEEEecCCCcEEEEEeCCC
Q 004214 277 -----VLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVG-TGHMGAVGAVAFSKKLQNFLVSGSSDH 350 (768)
Q Consensus 277 -----~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~dg 350 (768)
.+.+|...|.+++ +.+++.. |++++.||.|++||+.++.....+ .+|...|.+++|++++ .+++++.|+
T Consensus 314 ~~~~~~~~gh~~~v~~l~--~spdg~~-l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~--~l~s~s~d~ 388 (611)
T 1nr0_A 314 GSIDQVRYGHNKAITALS--SSADGKT-LFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKG--DLFTVSWDD 388 (611)
T ss_dssp TEEEEEECCCSSCEEEEE--ECTTSSE-EEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTS--CEEEEETTT
T ss_pred CCcceEEcCCCCCEEEEE--EeCCCCE-EEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCC--cEEEEEcCC
Confidence 3457889999997 7777775 999999999999999999887765 6799999999999875 488999999
Q ss_pred eEEEEeCCCCCCCCccc----cccc--------------------------eeeEeeccCCCeEEEEEccCCCEEEEEeC
Q 004214 351 TIKVWSFDGLSDDAEQP----MNLK--------------------------AKAVVAAHGKDINSLAVAPNDSLVCTGSQ 400 (768)
Q Consensus 351 ~i~iwd~~~~~~~~~~~----~~~~--------------------------~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 400 (768)
++++|++.......... .... .......|...+.+++|+|+|++|++|+.
T Consensus 389 ~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~ 468 (611)
T 1nr0_A 389 HLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQ 468 (611)
T ss_dssp EEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEET
T ss_pred ceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCC
Confidence 99999987543211000 0000 00011235677899999999999999999
Q ss_pred CCcEEEEeCCCCce--EEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCC-CceeEE--eecCCCcEEEEEEEeC
Q 004214 401 DRTACVWRLPDLVS--VVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISD-GSCLKT--FEGHTSSVLRASFLTR 475 (768)
Q Consensus 401 dg~i~i~d~~~~~~--~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~-~~~~~~--~~~~~~~v~~~~~s~~ 475 (768)
|++|++||+.++.. ... .+|...|++++|+|+|++|++++.|++|++||+.+ ++++.. +.+|...|++++|+|+
T Consensus 469 D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspd 547 (611)
T 1nr0_A 469 DSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPD 547 (611)
T ss_dssp TSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTT
T ss_pred CCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCC
Confidence 99999999987643 233 67999999999999999999999999999999987 666554 3459999999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCe-EE-EEeccC-CCcEEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 004214 476 GAQIVSCGADGLVKLWTVRTGE-CI-ATYDKH-EDKIWALAVGKKTEMFATGGSDALVNLWHDS 536 (768)
Q Consensus 476 ~~~l~s~~~dg~i~iwd~~~~~-~~-~~~~~~-~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~ 536 (768)
|++|++|+.|++|++||+.++. +. ..+.+| ...|++++|+|+++ |++++.||.|++|++.
T Consensus 548 g~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 548 NVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp SSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEECC
T ss_pred CCEEEEEECCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCCE-EEEecCCCCEEEEecc
Confidence 9999999999999999998875 33 567789 89999999999998 9999999999999973
No 3
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.8e-57 Score=508.93 Aligned_cols=471 Identities=27% Similarity=0.455 Sum_probs=400.5
Q ss_pred EEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEE
Q 004214 22 CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLW 101 (768)
Q Consensus 22 ~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vW 101 (768)
..+.|.||++.|+||+|||||++ ||+|+.|++|+|||. +++++.++.+|.+.|++++|+||+++|++++.|++|++|
T Consensus 8 e~~~L~GH~~~V~~~a~spdg~~--las~~~d~~v~iWd~-~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vW 84 (577)
T 2ymu_A 8 ERNRLEAHSSSVRGVAFSPDGQT--IASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 84 (577)
T ss_dssp EEEEECCCSSCEEEEEECTTSSC--EEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred EeeEECCCCCcEEEEEECCCCCE--EEEEeCCCEEEEEEC-CCCEEEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 46789999999999999999998 999999999999995 789999999999999999999999999999999999999
Q ss_pred ECCCCeeeeeeec-ceeEeeEEecCCCCCccccccccc---------------------------h--------------
Q 004214 102 DLRDYSCKLTVPT-YEMVEAVCAIPPGSAFDSFLSSYN---------------------------Q-------------- 139 (768)
Q Consensus 102 d~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~---------------------------~-------------- 139 (768)
|+ +++++..+.. ...+.+++|+|++..++....... .
T Consensus 85 d~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 163 (577)
T 2ymu_A 85 NR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTV 163 (577)
T ss_dssp ET-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEE
T ss_pred EC-CCCEEEEEECCCCCEEEEEECCCCCEEEEEcCCCceeecccccceeeeccCCCCceeeeeeecCCccceecccccce
Confidence 96 4566666654 456899999998875432110000 0
Q ss_pred ------------------hhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccC
Q 004214 140 ------------------QTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPS 201 (768)
Q Consensus 140 ------------------~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (768)
........+.+..+++++.+|.|++|+.....+... ..+...+..++++|+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~~~~~~~~-----------~~~~~~v~~~~~s~d 232 (577)
T 2ymu_A 164 KLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTL-----------TGHSSSVRGVAFSPD 232 (577)
T ss_dssp EEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEE-----------ECCSSCEEEEEECTT
T ss_pred eccccceeeeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeCCCcEEEEE-----------ecCCCCEEEEEECCC
Confidence 000001112344688999999999999755432211 123466788999999
Q ss_pred CCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCC
Q 004214 202 NQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGH 281 (768)
Q Consensus 202 ~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~ 281 (768)
+..+++++.|+.+++|+.... ....+.+|...|.+++|.+ ++..+++++.++.|++|+.. ++....+.+|
T Consensus 233 g~~l~~~~~d~~i~~w~~~~~--------~~~~~~~~~~~v~~v~~~~-d~~~l~~~~~d~~i~~w~~~-~~~~~~~~~h 302 (577)
T 2ymu_A 233 GQTIASASDDKTVKLWNRNGQ--------LLQTLTGHSSSVNGVAFRP-DGQTIASASDDKTVKLWNRN-GQLLQTLTGH 302 (577)
T ss_dssp SSCEEEEETTSCEEEECTTSC--------EEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETT-SCEEEEECCC
T ss_pred CCEEEEEeCCCEEEEEeCCCC--------EEEEEecCCCCEEEEEEcC-CCCEEEEEeCCCEEEEEeCC-CcEEEEEecC
Confidence 999999999999999985432 3345678899999999985 77899999999999999964 5667788999
Q ss_pred ccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCC
Q 004214 282 SEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLS 361 (768)
Q Consensus 282 ~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 361 (768)
...|.+++ +.+++.. +++++.||.|++||.... .+..+.+|...+.+++|+|++. ++++++.||.|++|+...
T Consensus 303 ~~~v~~~~--~~~~~~~-l~t~~~d~~i~~w~~~~~-~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~dg~v~~~~~~~-- 375 (577)
T 2ymu_A 303 SSSVWGVA--FSPDGQT-IASASDDKTVKLWNRNGQ-HLQTLTGHSSSVWGVAFSPDGQ-TIASASDDKTVKLWNRNG-- 375 (577)
T ss_dssp SSCEEEEE--ECTTSSE-EEEEETTSCEEEEETTSC-EEEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTC--
T ss_pred CCCeEEEE--ECCCCCE-EEEEeCCCeEEEEeCCCC-eeEEEeCCCCCEEEEEECCCCC-EEEEEeCCCEEEEEcCCC--
Confidence 99999997 6677665 999999999999998755 4566788999999999999976 799999999999999642
Q ss_pred CCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEee
Q 004214 362 DDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITAS 441 (768)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~ 441 (768)
........|...|++++|+|++++|++++.|+.|++||. +++.+..+.+|...|++++|+|++++|++++
T Consensus 376 ---------~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~ 445 (577)
T 2ymu_A 376 ---------QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASAS 445 (577)
T ss_dssp ---------CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred ---------CEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEc
Confidence 245566789999999999999999999999999999995 6778888999999999999999999999999
Q ss_pred CCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEE
Q 004214 442 GDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMF 521 (768)
Q Consensus 442 ~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l 521 (768)
.|+.|++||. +++++..+.+|...|++++|+|++++|++++.|+.|++||. +++++..+.+|...|++++|+|++++|
T Consensus 446 ~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l 523 (577)
T 2ymu_A 446 DDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTI 523 (577)
T ss_dssp TTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCE
T ss_pred CCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEE
Confidence 9999999996 67889999999999999999999999999999999999994 789999999999999999999999999
Q ss_pred EEEeCCCcEEEEEcC
Q 004214 522 ATGGSDALVNLWHDS 536 (768)
Q Consensus 522 ~s~~~dg~v~vw~~~ 536 (768)
++++.||.|++|+..
T Consensus 524 ~s~~~dg~v~lwd~~ 538 (577)
T 2ymu_A 524 ASASDDKTVKLWNRN 538 (577)
T ss_dssp EEEETTSEEEEECTT
T ss_pred EEEECcCEEEEEeCC
Confidence 999999999999964
No 4
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=2.6e-54 Score=483.86 Aligned_cols=448 Identities=18% Similarity=0.212 Sum_probs=372.3
Q ss_pred cCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEEECCCCe
Q 004214 28 GHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYS 107 (768)
Q Consensus 28 gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~~~~ 107 (768)
.+++.+.+++|+|||+. ||+++ +++|++||+.+++....+.+|...|++++|+|+|++|++++.|++|++||+.+++
T Consensus 16 ~~~g~~~~~~~spdg~~--l~~~~-~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~ 92 (611)
T 1nr0_A 16 TARGTAVVLGNTPAGDK--IQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTT 92 (611)
T ss_dssp CCTTCCCCCEECTTSSE--EEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTT
T ss_pred cccCceeEEeeCCCCCE--EEeCC-CCEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCc
Confidence 36888999999999987 88887 5699999999999999999999999999999999999999999999999997654
Q ss_pred e--eeeee-cceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCC----cEEEEEEcCCceeeeecCCce
Q 004214 108 C--KLTVP-TYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGER----GIVRMWNADSACLYEQKSSDV 180 (768)
Q Consensus 108 ~--~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----g~i~iwd~~~~~~~~~~~~~~ 180 (768)
. ...+. +...+.+++|+|++. .+++++.+ +.|++||.... .
T Consensus 93 ~~~~~~~~~~~~~v~~v~fs~dg~-----------------------~l~~~~~~~~~~~~v~~wd~~~~--~------- 140 (611)
T 1nr0_A 93 HILKTTIPVFSGPVKDISWDSESK-----------------------RIAAVGEGRERFGHVFLFDTGTS--N------- 140 (611)
T ss_dssp CCEEEEEECSSSCEEEEEECTTSC-----------------------EEEEEECCSSCSEEEEETTTCCB--C-------
T ss_pred ceeeEeecccCCceEEEEECCCCC-----------------------EEEEEECCCCceeEEEEeeCCCC--c-------
Confidence 3 33444 345799999999986 67777654 57888884321 1
Q ss_pred eecccccCcccceeEEEEccCCCc-eEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEe
Q 004214 181 TISFEMDDSKRGFTAATVLPSNQG-LLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVAT 259 (768)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 259 (768)
.....+...+..+.|+|++.. +++++.|+.+++|+.... .....+.+|...|.+++|+| ++++|++++
T Consensus 141 ---~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~-------~~~~~l~~H~~~V~~v~fsp-dg~~las~s 209 (611)
T 1nr0_A 141 ---GNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPF-------KFKSTFGEHTKFVHSVRYNP-DGSLFASTG 209 (611)
T ss_dssp ---BCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTB-------EEEEEECCCSSCEEEEEECT-TSSEEEEEE
T ss_pred ---ceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCC-------eEeeeeccccCceEEEEECC-CCCEEEEEE
Confidence 112345578899999999874 899999999999996532 23456788999999999986 788999999
Q ss_pred CCCcEEEEECCCceeeeeee-------CCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEE-----------
Q 004214 260 NIEQVQVYDLSSMSCSYVLA-------GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVG----------- 321 (768)
Q Consensus 260 ~~~~i~i~d~~~~~~~~~~~-------~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~----------- 321 (768)
.|+.|++||..+++....+. +|...|.+++ +.+++.. |++++.|++|++||+.+++++.
T Consensus 210 ~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~--~spdg~~-l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~ 286 (611)
T 1nr0_A 210 GDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLT--WSPDGTK-IASASADKTIKIWNVATLKVEKTIPVGTRIEDQ 286 (611)
T ss_dssp TTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEE--ECTTSSE-EEEEETTSEEEEEETTTTEEEEEEECCSSGGGC
T ss_pred CCCcEEEEECCCCcEeeeeccccccccccCCCEEEEE--ECCCCCE-EEEEeCCCeEEEEeCCCCceeeeecCCCCccce
Confidence 99999999999998887774 7999999998 7777765 9999999999999998876543
Q ss_pred --------------------------------eeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccc
Q 004214 322 --------------------------------VGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMN 369 (768)
Q Consensus 322 --------------------------------~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 369 (768)
.+.+|...|.+++|+|+++ +|++++.|++|++||+..+.
T Consensus 287 ~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~-~l~s~s~D~~v~~Wd~~~~~-------- 357 (611)
T 1nr0_A 287 QLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGK-TLFSADAEGHINSWDISTGI-------- 357 (611)
T ss_dssp EEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCC--------
T ss_pred eEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCC-EEEEEeCCCcEEEEECCCCc--------
Confidence 3357899999999999976 89999999999999998542
Q ss_pred cceeeE-eeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCce----------------------------------
Q 004214 370 LKAKAV-VAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVS---------------------------------- 414 (768)
Q Consensus 370 ~~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~---------------------------------- 414 (768)
.... ...|...|.+++|++++ .+++++.|+.+++|++.+...
T Consensus 358 --~~~~~~~~h~~~v~~~~~s~~~-~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v 434 (611)
T 1nr0_A 358 --SNRVFPDVHATMITGIKTTSKG-DLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHI 434 (611)
T ss_dssp --EEECSSCSCSSCEEEEEECTTS-CEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEE
T ss_pred --eeeecccCCcceEEEEEECCCC-cEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceE
Confidence 1111 24688899999999765 678889999999999754321
Q ss_pred -------EEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCce--eEEeecCCCcEEEEEEEeCCCEEEEEeCC
Q 004214 415 -------VVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSC--LKTFEGHTSSVLRASFLTRGAQIVSCGAD 485 (768)
Q Consensus 415 -------~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 485 (768)
+..+ .|...+.+++|+|+|++|++|+.|++|++||+.++.. +.. .+|...|++++|+|+|++|++++.|
T Consensus 435 ~~~~~~~~~~~-~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d 512 (611)
T 1nr0_A 435 AIYSHGKLTEV-PISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQS 512 (611)
T ss_dssp EEEETTEEEEE-ECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETT
T ss_pred EEEeCCceeee-ecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCC
Confidence 1112 2556789999999999999999999999999987653 344 6799999999999999999999999
Q ss_pred CcEEEEECCC-CeEEEE--eccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCH
Q 004214 486 GLVKLWTVRT-GECIAT--YDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTA 538 (768)
Q Consensus 486 g~i~iwd~~~-~~~~~~--~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~ 538 (768)
++|++|++.+ ++++.. +..|...|++++|+|+|++|++|+.|+.|++|++.++
T Consensus 513 ~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~ 568 (611)
T 1nr0_A 513 RKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKP 568 (611)
T ss_dssp SCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCT
T ss_pred CCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCc
Confidence 9999999988 666554 3449999999999999999999999999999998764
No 5
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=3.5e-55 Score=534.59 Aligned_cols=485 Identities=20% Similarity=0.292 Sum_probs=409.6
Q ss_pred EEEeecCCCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEE
Q 004214 2 FALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMA 81 (768)
Q Consensus 2 ~latg~~dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~ 81 (768)
+||+|+.||.|+|||+.+++.+..+.+|.+.|++++|+|++++ +++|+.||+|+|||+.+++++..+.+|...|.+++
T Consensus 629 ~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~--l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~ 706 (1249)
T 3sfz_A 629 RIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSY--IATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCH 706 (1249)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSE--EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred EEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCE--EEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEE
Confidence 6899999999999999999999999999999999999999987 99999999999999999999999999999999999
Q ss_pred EcC--CCCEEEEEeCCCeEEEEECCCCeeeeeeecc-eeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeC
Q 004214 82 ITS--DGSTLISAGRDKVVNLWDLRDYSCKLTVPTY-EMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGE 158 (768)
Q Consensus 82 fs~--d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (768)
|+| ++.++++++.|+.|++||+.++++...+..+ ..+.+++|+|++. .+++++.
T Consensus 707 ~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~-----------------------~l~s~s~ 763 (1249)
T 3sfz_A 707 FTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDE-----------------------LLASCSA 763 (1249)
T ss_dssp ECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTT-----------------------EEEEEES
T ss_pred EecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCC-----------------------EEEEEEC
Confidence 999 5568999999999999999999988887654 5689999999886 8899999
Q ss_pred CcEEEEEEcCCceeeeecCCce---------------------------------------------eecccccCcccce
Q 004214 159 RGIVRMWNADSACLYEQKSSDV---------------------------------------------TISFEMDDSKRGF 193 (768)
Q Consensus 159 ~g~i~iwd~~~~~~~~~~~~~~---------------------------------------------~~~~~~~~~~~~~ 193 (768)
||.|++||+.++.......... ........+...+
T Consensus 764 dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v 843 (1249)
T 3sfz_A 764 DGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTI 843 (1249)
T ss_dssp SSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCC
T ss_pred CCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCce
Confidence 9999999988773221110000 0000011344667
Q ss_pred eEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEec------------------------
Q 004214 194 TAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLG------------------------ 249 (768)
Q Consensus 194 ~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------------------------ 249 (768)
..+.++|++..+++++.+|.+.+|+..... ....+.+|...|.+++|++
T Consensus 844 ~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~-------~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~ 916 (1249)
T 3sfz_A 844 QYCDFSPYDHLAVIALSQYCVELWNIDSRL-------KVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCK 916 (1249)
T ss_dssp CEEEECSSTTEEEEECSSSCEEEEETTTTE-------EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHS
T ss_pred EEEEEcCCCCEEEEEeCCCeEEEEEcCCCc-------eeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccce
Confidence 788999999999999999999999987542 2233345555555555543
Q ss_pred ------------------------------------------------------CCCCEEEEEeCCCcEEEEECCCceee
Q 004214 250 ------------------------------------------------------EEEQYLAVATNIEQVQVYDLSSMSCS 275 (768)
Q Consensus 250 ------------------------------------------------------~~~~~l~~~~~~~~i~i~d~~~~~~~ 275 (768)
+++.++++|+.+|.|++|++.++...
T Consensus 917 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~ 996 (1249)
T 3sfz_A 917 NSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVF 996 (1249)
T ss_dssp CCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCE
T ss_pred eeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCcee
Confidence 23334444444555555555555666
Q ss_pred eeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEE
Q 004214 276 YVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVW 355 (768)
Q Consensus 276 ~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iw 355 (768)
..+.+|...|.++. +.+++.. +++++.||.|++||+.++.... ...|...|.+++|+|++ .+++++.||.|++|
T Consensus 997 ~~~~~h~~~v~~l~--~s~dg~~-l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~--~l~~~~~dg~v~vw 1070 (1249)
T 3sfz_A 997 SSGVGHKKAVRHIQ--FTADGKT-LISSSEDSVIQVWNWQTGDYVF-LQAHQETVKDFRLLQDS--RLLSWSFDGTVKVW 1070 (1249)
T ss_dssp EECCCCSSCCCCEE--ECSSSSC-EEEECSSSBEEEEETTTTEEEC-CBCCSSCEEEEEECSSS--EEEEEESSSEEEEE
T ss_pred eecccCCCceEEEE--ECCCCCE-EEEEcCCCEEEEEECCCCceEE-EecCCCcEEEEEEcCCC--cEEEEECCCcEEEE
Confidence 66778999999997 7777776 9999999999999999998774 56899999999999974 58999999999999
Q ss_pred eCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCC
Q 004214 356 SFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQ 435 (768)
Q Consensus 356 d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~ 435 (768)
|+..+ .....+..|...|.+++|+|+++++++++.||+|++||+.+++.+..+.+|..+|++++|+|+++
T Consensus 1071 d~~~~----------~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~ 1140 (1249)
T 3sfz_A 1071 NVITG----------RIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGI 1140 (1249)
T ss_dssp ETTTT----------CCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSS
T ss_pred ECCCC----------ceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCCC
Confidence 99854 24456678999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeCCCcEEEEeCCCCceeEEe---------ecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCC
Q 004214 436 VVITASGDKTIKIWSISDGSCLKTF---------EGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHE 506 (768)
Q Consensus 436 ~l~t~~~d~~i~iwd~~~~~~~~~~---------~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 506 (768)
+|++|+.||.|++||+.+++++..+ .+|...|++++|+|+|++|++++ |.|++||+.+++++..+..|.
T Consensus 1141 ~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~--g~v~vwd~~~g~~~~~~~~~~ 1218 (1249)
T 3sfz_A 1141 LLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATGDSSQTFYTNG 1218 (1249)
T ss_dssp EEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES--SSEEEBCSSSCBCCCCCCCSS
T ss_pred EEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC--CeEEEEECCCCceeeeeeccC
Confidence 9999999999999999999887766 67999999999999999999886 899999999999999999999
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 004214 507 DKIWALAVGKKTEMFATGGSDALVNLWHDS 536 (768)
Q Consensus 507 ~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~ 536 (768)
..|++++|+|++.+|++++.||.|++|++.
T Consensus 1219 ~~i~~~~~s~dg~~l~~~~~dg~v~vw~l~ 1248 (1249)
T 3sfz_A 1219 TNLKKIHVSPDFRTYVTVDNLGILYILQVL 1248 (1249)
T ss_dssp CCCCCCEECSSSCCEEEECTTCCEEEECCC
T ss_pred CcccEEEECCCCCEEEEecCCcEEEEEeec
Confidence 999999999999999999999999999874
No 6
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.4e-53 Score=481.60 Aligned_cols=480 Identities=16% Similarity=0.210 Sum_probs=397.2
Q ss_pred EEEeecCCCcEEEEECCCC----EEEEEEEcCCCc-EEEEEEee--CCCccEEEEEeCCCcEEEEECCCC--------ee
Q 004214 2 FALLEGADRKVLVWDVDGG----FCTHYFKGHKGV-VSSILFHP--DTDKSLLFSGSDDATVRVWDLLAK--------KC 66 (768)
Q Consensus 2 ~latg~~dg~i~vwd~~~~----~~~~~l~gh~~~-V~~l~~sp--d~~~~~l~sg~~dg~I~iWd~~~~--------~~ 66 (768)
+||+++ ++.|+|||+.++ ..+..+.+|.+. |++++|+| ++++ |++|+.||+|+|||+.++ +.
T Consensus 32 ~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~--l~s~~~dg~v~vw~~~~~~~~~~~~~~~ 108 (615)
T 1pgu_A 32 AIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQY--LCSGDESGKVIVWGWTFDKESNSVEVNV 108 (615)
T ss_dssp EEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCE--EEEEETTSEEEEEEEEEEGGGTEEEEEE
T ss_pred EEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCE--EEEecCCCEEEEEeCCCCcccccccccc
Confidence 577777 899999999999 889999999999 99999999 9987 999999999999999755 77
Q ss_pred EEEecCccceeEEEEEcCCCCEEEEEeCC----CeEEEEECCCCeeeeeeec-ceeEeeEEecCCCCCccccccccchhh
Q 004214 67 VATLDKHFSRVTSMAITSDGSTLISAGRD----KVVNLWDLRDYSCKLTVPT-YEMVEAVCAIPPGSAFDSFLSSYNQQT 141 (768)
Q Consensus 67 ~~~l~~h~~~V~~l~fs~d~~~L~s~~~d----g~i~vWd~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~ 141 (768)
+..+..|..+|.+++|+|++++|++++.+ +.|.+|| .++.+..+.. ...+.++.|+|++..
T Consensus 109 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~------------ 174 (615)
T 1pgu_A 109 KSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSRPM------------ 174 (615)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSSSC------------
T ss_pred cchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECCCCCc------------
Confidence 88899999999999999999999999987 6888888 5555555554 446889999998742
Q ss_pred hhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCccc---ceeEEEEccC-CCceEEEEecCeEEEE
Q 004214 142 IKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKR---GFTAATVLPS-NQGLLCVTADQQLLLY 217 (768)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~l~~~~~dg~i~~~ 217 (768)
.+++++.+|.|++||+.++....... .+.. .+..+.++|+ +..+++++.++.+.+|
T Consensus 175 ----------~l~~~~~d~~v~vwd~~~~~~~~~~~----------~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw 234 (615)
T 1pgu_A 175 ----------RSMTVGDDGSVVFYQGPPFKFSASDR----------THHKQGSFVRDVEFSPDSGEFVITVGSDRKISCF 234 (615)
T ss_dssp ----------EEEEEETTTEEEEEETTTBEEEEEEC----------SSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEE
T ss_pred ----------EEEEEeCCCcEEEEeCCCcceeeeec----------ccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEE
Confidence 68999999999999998875433221 1234 6889999999 8999999999999999
Q ss_pred eeccCcccceeeEEEeee-c---ccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCC----ccceEEEe
Q 004214 218 TTVEVPEKKMELILSKRL-V---GYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGH----SEIVLCLD 289 (768)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~-~---~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~----~~~v~~l~ 289 (768)
+..... ....+ . +|...|.+++|+ ++.++++++.++.|++||+.+++....+..+ ...+.++.
T Consensus 235 d~~~~~-------~~~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (615)
T 1pgu_A 235 DGKSGE-------FLKYIEDDQEPVQGGIFALSWL--DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVV 305 (615)
T ss_dssp ETTTCC-------EEEECCBTTBCCCSCEEEEEES--SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEE
T ss_pred ECCCCC-------EeEEecccccccCCceEEEEEc--CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEE
Confidence 987543 22233 3 788999999998 8889999999999999999999998888776 35666664
Q ss_pred eeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecC-------------------------------
Q 004214 290 TCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKK------------------------------- 338 (768)
Q Consensus 290 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~------------------------------- 338 (768)
+ +++.. +++++.||.|++||+.+++.+..+.+|...|.+++| |+
T Consensus 306 --~-~~~~~-l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~ 380 (615)
T 1pgu_A 306 --A-TGNGR-IISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDN 380 (615)
T ss_dssp --E-EETTE-EEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCCCSCEEEEEC
T ss_pred --e-CCCCe-EEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCcccCceEEEEE
Confidence 3 45555 999999999999999999998888888888888877 54
Q ss_pred --CCcEEEEEeCCCeEEEEeCCCCCCCCc------------------------cccccceeeEeeccCCCeEEEEEccCC
Q 004214 339 --LQNFLVSGSSDHTIKVWSFDGLSDDAE------------------------QPMNLKAKAVVAAHGKDINSLAVAPND 392 (768)
Q Consensus 339 --~~~~l~s~~~dg~i~iwd~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~i~~~~~s~~~ 392 (768)
+. .+++++.|+.|++|++........ ......... ...+...+.+++|+ +
T Consensus 381 ~~~~-~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~ 456 (615)
T 1pgu_A 381 SKAQ-EYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIK-SVRLNSPGSAVSLS--Q 456 (615)
T ss_dssp CSTT-CCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEE-EEECSSCEEEEEEC--S
T ss_pred CCCc-EEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceee-ecccCCCceEEEEc--C
Confidence 12 344445555555554432110000 000001111 12367789999999 8
Q ss_pred CEEEEEeC-CCcEEEEeCCCCceE-EEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeec-CCCcEEE
Q 004214 393 SLVCTGSQ-DRTACVWRLPDLVSV-VTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEG-HTSSVLR 469 (768)
Q Consensus 393 ~~l~~~~~-dg~i~i~d~~~~~~~-~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~-~~~~v~~ 469 (768)
+++++++. ||.|++||+.+++.. ..+.+|...|++++|+|++++|++++.||.|++||+.+++++..+.+ |...|++
T Consensus 457 ~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~ 536 (615)
T 1pgu_A 457 NYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINA 536 (615)
T ss_dssp SEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEE
T ss_pred CEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeE
Confidence 89999999 999999999987665 66778999999999999999999999999999999999999999998 9999999
Q ss_pred EEEEe----------CCCEEEEEeCCCcEEEEECCCC-eEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 004214 470 ASFLT----------RGAQIVSCGADGLVKLWTVRTG-ECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDST 537 (768)
Q Consensus 470 ~~~s~----------~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~ 537 (768)
++|+| ++++|++++.||.|++||+.++ +++..+.+|...|++++|+|+++ |++++.||.|++|++.+
T Consensus 537 ~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 537 ISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp EEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred EEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEecCCceEEEEeeec
Confidence 99999 9999999999999999999998 89999999999999999999999 99999999999999875
No 7
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.6e-51 Score=502.37 Aligned_cols=465 Identities=20% Similarity=0.300 Sum_probs=399.5
Q ss_pred EEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 004214 23 THYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWD 102 (768)
Q Consensus 23 ~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd 102 (768)
...+.+|.+.|++++|+|+|++ +++|+.||+|+|||+.+++.+..+.+|.+.|++++|+|+|++|++++.|+.|++||
T Consensus 608 ~~~~~~h~~~v~~~~~s~~~~~--l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd 685 (1249)
T 3sfz_A 608 RLVVRPHTDAVYHACFSQDGQR--IASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWD 685 (1249)
T ss_dssp SEEECCCSSCEEEEEECTTSSE--EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred eEEEecccccEEEEEECCCCCE--EEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEE
Confidence 4577899999999999999987 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeeeeeeecc-eeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCcee
Q 004214 103 LRDYSCKLTVPTY-EMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVT 181 (768)
Q Consensus 103 ~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~ 181 (768)
+.+++++..+..+ ..+.+++|+|++.. ..+++++.||.|++||+.++......
T Consensus 686 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~---------------------~~l~sg~~d~~v~vwd~~~~~~~~~~----- 739 (1249)
T 3sfz_A 686 SATGKLVHTYDEHSEQVNCCHFTNKSNH---------------------LLLATGSNDFFLKLWDLNQKECRNTM----- 739 (1249)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECSSSSC---------------------CEEEEEETTSCEEEEETTSSSEEEEE-----
T ss_pred CCCCceEEEEcCCCCcEEEEEEecCCCc---------------------eEEEEEeCCCeEEEEECCCcchhhee-----
Confidence 9999999888654 45889999886542 27899999999999999988433221
Q ss_pred ecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCccccee---------------------------------
Q 004214 182 ISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKME--------------------------------- 228 (768)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~--------------------------------- 228 (768)
..+...+..+.++|++..+++++.||.+.+|+..........
T Consensus 740 -----~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~ 814 (1249)
T 3sfz_A 740 -----FGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKII 814 (1249)
T ss_dssp -----CCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEE
T ss_pred -----cCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEE
Confidence 234467889999999999999999999999998654311000
Q ss_pred ---------------eEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeee
Q 004214 229 ---------------LILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCAL 293 (768)
Q Consensus 229 ---------------~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~ 293 (768)
........++...+.+++|++ ++.++++++.+|.|++||+.++.....+.+|...|.++. +.
T Consensus 815 ~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~--~s 891 (1249)
T 3sfz_A 815 VAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSP-YDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVM--FS 891 (1249)
T ss_dssp EEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECS-STTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEE--EC
T ss_pred EEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEE--EC
Confidence 001112236788899999985 778999999999999999999999999999999999997 66
Q ss_pred cCCCEEEEEEeCCCeEEEEeCC----------------------------------------------------------
Q 004214 294 SSGKILIVTGSKDNSVRLWDSE---------------------------------------------------------- 315 (768)
Q Consensus 294 ~~~~~~l~~~~~dg~i~iwd~~---------------------------------------------------------- 315 (768)
+++.. +++++.||.|++|++.
T Consensus 892 pdg~~-l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 970 (1249)
T 3sfz_A 892 PDGSS-FLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLS 970 (1249)
T ss_dssp TTSSE-EEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEEC
T ss_pred CCCCE-EEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEc
Confidence 66665 7888888888877632
Q ss_pred ---------------------CceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceee
Q 004214 316 ---------------------SRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKA 374 (768)
Q Consensus 316 ---------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 374 (768)
++.....+.+|...|.+++|+|+++ ++++++.||.|++||+..+. ..
T Consensus 971 p~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~s~~~dg~i~vwd~~~~~-----------~~ 1038 (1249)
T 3sfz_A 971 PHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGK-TLISSSEDSVIQVWNWQTGD-----------YV 1038 (1249)
T ss_dssp TTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSS-CEEEECSSSBEEEEETTTTE-----------EE
T ss_pred CCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCC-EEEEEcCCCEEEEEECCCCc-----------eE
Confidence 3334445567889999999999976 79999999999999997542 22
Q ss_pred EeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCC
Q 004214 375 VVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG 454 (768)
Q Consensus 375 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~ 454 (768)
....|...|.+++|+|++ .+++++.||.|++||+.+++....+.+|...|++++|+|+++++++++.||+|++||+.++
T Consensus 1039 ~~~~~~~~v~~~~~~~~~-~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~ 1117 (1249)
T 3sfz_A 1039 FLQAHQETVKDFRLLQDS-RLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLL 1117 (1249)
T ss_dssp CCBCCSSCEEEEEECSSS-EEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSS
T ss_pred EEecCCCcEEEEEEcCCC-cEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCc
Confidence 345788999999999976 5788899999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEe---------ccCCCcEEEEEEcCCCCEEEEEe
Q 004214 455 SCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATY---------DKHEDKIWALAVGKKTEMFATGG 525 (768)
Q Consensus 455 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---------~~~~~~v~~l~~s~~~~~l~s~~ 525 (768)
+++..+.+|...|++++|+|+|++|++|+.||.|++||+.+++++..+ ..|.+.|++++|+|+|++|++++
T Consensus 1118 ~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~ 1197 (1249)
T 3sfz_A 1118 SPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG 1197 (1249)
T ss_dssp SCSBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES
T ss_pred ceeeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC
Confidence 999999999999999999999999999999999999999999887765 56899999999999999999986
Q ss_pred CCCcEEEEEcCCHH
Q 004214 526 SDALVNLWHDSTAA 539 (768)
Q Consensus 526 ~dg~v~vw~~~~~~ 539 (768)
|.|++|++.+++
T Consensus 1198 --g~v~vwd~~~g~ 1209 (1249)
T 3sfz_A 1198 --GYLKWWNVATGD 1209 (1249)
T ss_dssp --SSEEEBCSSSCB
T ss_pred --CeEEEEECCCCc
Confidence 899999988754
No 8
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.1e-51 Score=473.80 Aligned_cols=493 Identities=10% Similarity=0.065 Sum_probs=372.0
Q ss_pred EEEeecCCCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEE
Q 004214 2 FALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMA 81 (768)
Q Consensus 2 ~latg~~dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~ 81 (768)
+||+|+.||.|+|||..++++...+ .|...|++++|+| |++ |++++.|++|+|||+.+++++..+. |.+.|++++
T Consensus 31 ~lAsgs~Dg~I~lw~~~~~~~~~~~-~~~~~V~~l~fsp-g~~--L~S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~~v~ 105 (902)
T 2oaj_A 31 LLAIATVTGEVHIYGQQQVEVVIKL-EDRSAIKEMRFVK-GIY--LVVINAKDTVYVLSLYSQKVLTTVF-VPGKITSID 105 (902)
T ss_dssp EEEEEETTSEEEEECSTTCEEEEEC-SSCCCEEEEEEET-TTE--EEEEETTCEEEEEETTTCSEEEEEE-CSSCEEEEE
T ss_pred EEEEEeCCCEEEEEeCCCcEEEEEc-CCCCCEEEEEEcC-CCE--EEEEECcCeEEEEECCCCcEEEEEc-CCCCEEEEE
Confidence 7999999999999999998876654 4889999999999 665 9999999999999999999998886 778899999
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCeeee-e----------e-ecceeEeeEEecCCCCCccccccccchhhhhcccCCc
Q 004214 82 ITSDGSTLISAGRDKVVNLWDLRDYSCKL-T----------V-PTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSL 149 (768)
Q Consensus 82 fs~d~~~L~s~~~dg~i~vWd~~~~~~~~-~----------~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (768)
|+|++++|++++.||.|++||+.++++.. . . .+...+.+++|+|.+.
T Consensus 106 ~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~--------------------- 164 (902)
T 2oaj_A 106 TDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDI--------------------- 164 (902)
T ss_dssp CCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEE---------------------
T ss_pred ECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCC---------------------
Confidence 99999999999999999999999987641 1 1 1234578888888532
Q ss_pred ceEEEEeeCCcEEEEEEcCCceeeeecCCceeec--------ccccCcccceeEEEEccCCCceEEEEecCeEEEEeecc
Q 004214 150 EIHFITVGERGIVRMWNADSACLYEQKSSDVTIS--------FEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVE 221 (768)
Q Consensus 150 ~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~ 221 (768)
..+++++.+|.| +||+.++............. .....+...+..+.|+|++..+++++.||.+++|+...
T Consensus 165 -~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~ 242 (902)
T 2oaj_A 165 -GTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANS 242 (902)
T ss_dssp -EEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTT
T ss_pred -CEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Confidence 278899999999 99999885443222110000 00112235689999999999999999999999999876
Q ss_pred CcccceeeEEEeee---c-------------ccCCceeEEEEecC---C-CCEEEEEeCC-----CcEEEEECC------
Q 004214 222 VPEKKMELILSKRL---V-------------GYNEEILDLKFLGE---E-EQYLAVATNI-----EQVQVYDLS------ 270 (768)
Q Consensus 222 ~~~~~~~~~~~~~~---~-------------~~~~~i~~~~~~~~---~-~~~l~~~~~~-----~~i~i~d~~------ 270 (768)
.... ..+.+ . .+...|.+++|.+. + ..++++|+.+ ..+.+|++.
T Consensus 243 g~~~-----~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~ 317 (902)
T 2oaj_A 243 GHMI-----MARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYS 317 (902)
T ss_dssp CCEE-----EEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGG
T ss_pred CcEE-----EEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCcc
Confidence 4311 11111 1 13457999999752 2 3567777554 378888842
Q ss_pred ------------Cceeeeeee-CCccceEEEeeeeec---------CCCEEEEEEeCCCeEEEEeCCCceEEEe------
Q 004214 271 ------------SMSCSYVLA-GHSEIVLCLDTCALS---------SGKILIVTGSKDNSVRLWDSESRCCVGV------ 322 (768)
Q Consensus 271 ------------~~~~~~~~~-~~~~~v~~l~~~~~~---------~~~~~l~~~~~dg~i~iwd~~~~~~~~~------ 322 (768)
+......+. .+...+..+. +.+ .+...+++++.||.|++||+.++.....
T Consensus 318 ~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~ 395 (902)
T 2oaj_A 318 ITSYEGMKNYYANPKQMKIFPLPTNVPIVNIL--PIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQ 395 (902)
T ss_dssp GCCHHHHHHHHHSCSEEEEECCSSSSCEEEEE--ECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCG
T ss_pred ccchhhhhhhhcCccceEEEecCCCCceEEEE--ECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCC
Confidence 222333343 3566666665 322 1222488888999999999977754322
Q ss_pred -eecccCcEEEE----------------------------------EEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccc
Q 004214 323 -GTGHMGAVGAV----------------------------------AFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQP 367 (768)
Q Consensus 323 -~~~~~~~v~~~----------------------------------~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 367 (768)
+..|...|+++ +|+|+++ ++++|+.|++|++||+..+....
T Consensus 396 ~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~-~laSgs~DgtVrlWd~~~g~~~~--- 471 (902)
T 2oaj_A 396 NLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGT-AFITGHSNGSVRIYDASHGDIQD--- 471 (902)
T ss_dssp GGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEE-EEEEEETTSEEEEEESSCCTTTT---
T ss_pred cccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCc-EEEEecCCCcEEEEECCCccccC---
Confidence 22333444444 4567644 89999999999999998663110
Q ss_pred cccceeeE-e-----eccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCc----------------------------
Q 004214 368 MNLKAKAV-V-----AAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLV---------------------------- 413 (768)
Q Consensus 368 ~~~~~~~~-~-----~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~---------------------------- 413 (768)
...... . .+|...|.+++|+|++++||+|+.||+|++||+.+++
T Consensus 472 --~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 549 (902)
T 2oaj_A 472 --NASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGV 549 (902)
T ss_dssp --TBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCS
T ss_pred --CceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccc
Confidence 000110 1 2788999999999999999999999999999997652
Q ss_pred -----------------eEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeE-----Eee-cCCCcEEEE
Q 004214 414 -----------------SVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLK-----TFE-GHTSSVLRA 470 (768)
Q Consensus 414 -----------------~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~-----~~~-~~~~~v~~~ 470 (768)
++..+.+|..+|++++|||+| +||+|+.|++|+|||++++..+. .+. +|...|+++
T Consensus 550 ~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv 628 (902)
T 2oaj_A 550 LVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCI 628 (902)
T ss_dssp EEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEE
T ss_pred cccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEE
Confidence 367788999999999999999 99999999999999998877654 233 899999999
Q ss_pred EEE-----eCC---CEEEEEeCCCcEEEEEC---CCCeEEEEeccC-----CCcEEEEE-Ec------------------
Q 004214 471 SFL-----TRG---AQIVSCGADGLVKLWTV---RTGECIATYDKH-----EDKIWALA-VG------------------ 515 (768)
Q Consensus 471 ~~s-----~~~---~~l~s~~~dg~i~iwd~---~~~~~~~~~~~~-----~~~v~~l~-~s------------------ 515 (768)
+|+ ||| ++|++|+.||+|++||+ .+|++...+.+| .++|.+++ |+
T Consensus 629 ~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~ 708 (902)
T 2oaj_A 629 EFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLS 708 (902)
T ss_dssp EEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGG
T ss_pred EEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccC
Confidence 999 885 89999999999999999 889988888776 47787776 65
Q ss_pred ----CCCCEEEEEeCCCcEEEEEcCCH
Q 004214 516 ----KKTEMFATGGSDALVNLWHDSTA 538 (768)
Q Consensus 516 ----~~~~~l~s~~~dg~v~vw~~~~~ 538 (768)
+++..|+++ +..|+||++.++
T Consensus 709 ~~~~~~~~~l~~~--~~~ir~~~~~~~ 733 (902)
T 2oaj_A 709 KGLCIPGIVLITG--FDDIRLITLGKS 733 (902)
T ss_dssp GTCCCCEEEEEEC--SSEEEEECTTCC
T ss_pred CCCCCCeEEEEEe--ccceEEEeCccc
Confidence 445444444 778999999874
No 9
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-50 Score=469.78 Aligned_cols=480 Identities=10% Similarity=0.030 Sum_probs=369.9
Q ss_pred EEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 004214 25 YFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLR 104 (768)
Q Consensus 25 ~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~ 104 (768)
...||.+.|++++|+|++++ ||+|+.||+|+|||..+++.+..+. |..+|.+++|+| |++|++++.|+.|++||+.
T Consensus 12 ~~~gh~~~V~~lafspdg~~--lAsgs~Dg~I~lw~~~~~~~~~~~~-~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~ 87 (902)
T 2oaj_A 12 NKYGMSSKPIAAAFDFTQNL--LAIATVTGEVHIYGQQQVEVVIKLE-DRSAIKEMRFVK-GIYLVVINAKDTVYVLSLY 87 (902)
T ss_dssp EEEECSSCEEEEEEETTTTE--EEEEETTSEEEEECSTTCEEEEECS-SCCCEEEEEEET-TTEEEEEETTCEEEEEETT
T ss_pred cccCCCCCcEEEEECCCCCE--EEEEeCCCEEEEEeCCCcEEEEEcC-CCCCEEEEEEcC-CCEEEEEECcCeEEEEECC
Confidence 34589999999999999987 9999999999999998888877665 788999999999 8899999999999999999
Q ss_pred CCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeec-
Q 004214 105 DYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTIS- 183 (768)
Q Consensus 105 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~- 183 (768)
+++++..+.....+.+++|+|++. ++++++.+|.|++||+.++.+...........
T Consensus 88 ~~~~~~~~~~~~~V~~v~~sp~g~-----------------------~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~ 144 (902)
T 2oaj_A 88 SQKVLTTVFVPGKITSIDTDASLD-----------------------WMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSS 144 (902)
T ss_dssp TCSEEEEEECSSCEEEEECCTTCS-----------------------EEEEEETTSCEEEEETTTTEEEEEEECCHHHHH
T ss_pred CCcEEEEEcCCCCEEEEEECCCCC-----------------------EEEEEcCCCcEEEEECCCCccccceeccccccc
Confidence 999998888778899999999887 89999999999999999885431111000000
Q ss_pred ccccCcccceeEEEEccCC-CceEEEEecCeEEEEeeccCcccceeeEEE------------eeecccCCceeEEEEecC
Q 004214 184 FEMDDSKRGFTAATVLPSN-QGLLCVTADQQLLLYTTVEVPEKKMELILS------------KRLVGYNEEILDLKFLGE 250 (768)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~------------~~~~~~~~~i~~~~~~~~ 250 (768)
.....+...+..++|+|.+ ..+++++.||.+ +|++....... .+... ....+|...|.+++|++
T Consensus 145 ~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fsp- 221 (902)
T 2oaj_A 145 FFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQ-SFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHP- 221 (902)
T ss_dssp TCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEE-EECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECT-
T ss_pred cccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEE-EEecccCCcCCCcccccccccccCCCeEEEEEcC-
Confidence 1223455678999999964 677888899999 99987653210 00000 00123357899999986
Q ss_pred CCCEEEEEeCCCcEEEEECCCceeeee--e---eC-------------CccceEEEeeeee--cCCCEEEEEEeCC----
Q 004214 251 EEQYLAVATNIEQVQVYDLSSMSCSYV--L---AG-------------HSEIVLCLDTCAL--SSGKILIVTGSKD---- 306 (768)
Q Consensus 251 ~~~~l~~~~~~~~i~i~d~~~~~~~~~--~---~~-------------~~~~v~~l~~~~~--~~~~~~l~~~~~d---- 306 (768)
++.+|++++.|+.|++||+.+++++.. + .. |...|.+++|+.. +++..++++|+.+
T Consensus 222 dg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~ 301 (902)
T 2oaj_A 222 NSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGD 301 (902)
T ss_dssp TSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSS
T ss_pred CCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCC
Confidence 688999999999999999999887643 2 12 3457999985432 3344668888765
Q ss_pred -CeEEEEeCC------------------CceEEEeee-cccCcEEEEEEecC---------CCcEEEEEeCCCeEEEEeC
Q 004214 307 -NSVRLWDSE------------------SRCCVGVGT-GHMGAVGAVAFSKK---------LQNFLVSGSSDHTIKVWSF 357 (768)
Q Consensus 307 -g~i~iwd~~------------------~~~~~~~~~-~~~~~v~~~~~~~~---------~~~~l~s~~~dg~i~iwd~ 357 (768)
+.+.+|++. +.+....+. .+.+.|..+.+.++ +...+++++.||.|++|++
T Consensus 302 ~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~ 381 (902)
T 2oaj_A 302 NQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLY 381 (902)
T ss_dssp CCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEET
T ss_pred CceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEEC
Confidence 378899842 122333333 46778888888662 2336888999999999998
Q ss_pred CCCCCCCcc---cc-------c---------------------cceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEE
Q 004214 358 DGLSDDAEQ---PM-------N---------------------LKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACV 406 (768)
Q Consensus 358 ~~~~~~~~~---~~-------~---------------------~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i 406 (768)
..+...... .. . ......+.+|...+.+++|+|++++|++|+.|++|++
T Consensus 382 ~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrl 461 (902)
T 2oaj_A 382 PSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRI 461 (902)
T ss_dssp TTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEE
T ss_pred CCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEE
Confidence 654211100 00 0 0011123456666777888999999999999999999
Q ss_pred EeCCCCceE----EEE--e-----ccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCC---------------------
Q 004214 407 WRLPDLVSV----VTF--R-----GHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG--------------------- 454 (768)
Q Consensus 407 ~d~~~~~~~----~~~--~-----~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~--------------------- 454 (768)
||+.++... ... . +|...|++++|+|++++||+|+.||+|+|||+.++
T Consensus 462 Wd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (902)
T 2oaj_A 462 YDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRF 541 (902)
T ss_dssp EESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSC
T ss_pred EECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeec
Confidence 999876421 111 1 78899999999999999999999999999999766
Q ss_pred ------------------------ceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEE-----Eec-c
Q 004214 455 ------------------------SCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIA-----TYD-K 504 (768)
Q Consensus 455 ------------------------~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~-----~~~-~ 504 (768)
+++..+.+|.+.|++++|+|+| +||+|+.||+|++||++++..+. .+. +
T Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~g 620 (902)
T 2oaj_A 542 SLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGA 620 (902)
T ss_dssp CGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSS
T ss_pred cccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccc
Confidence 2477888999999999999999 99999999999999998887764 232 7
Q ss_pred CCCcEEEEEEc-----CCC---CEEEEEeCCCcEEEEEc
Q 004214 505 HEDKIWALAVG-----KKT---EMFATGGSDALVNLWHD 535 (768)
Q Consensus 505 ~~~~v~~l~~s-----~~~---~~l~s~~~dg~v~vw~~ 535 (768)
|.+.|++++|+ ||| ++|++|+.||+|++|++
T Consensus 621 h~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~ 659 (902)
T 2oaj_A 621 QSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKI 659 (902)
T ss_dssp CCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEE
T ss_pred cccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEE
Confidence 89999999999 885 89999999999999998
No 10
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.8e-48 Score=439.71 Aligned_cols=446 Identities=17% Similarity=0.163 Sum_probs=375.7
Q ss_pred cCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCC----eeEEEecCccce-eEEEEEcC--CCCEEEEEeCCCeEEE
Q 004214 28 GHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK----KCVATLDKHFSR-VTSMAITS--DGSTLISAGRDKVVNL 100 (768)
Q Consensus 28 gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~----~~~~~l~~h~~~-V~~l~fs~--d~~~L~s~~~dg~i~v 100 (768)
.|.+.|++++|+|+|++ |++++ ++.|+|||+.++ +.+..+.+|... |++++|+| ++++|++++.||.|++
T Consensus 16 ~~~~~v~~~~~spdg~~--l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~v 92 (615)
T 1pgu_A 16 TQRNFTTHLSYDPTTNA--IAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIV 92 (615)
T ss_dssp CCTTCCCCCEEETTTTE--EEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEE
T ss_pred CccCceeEEEECCCCCE--EEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEE
Confidence 58999999999999987 88887 889999999999 899999999999 99999999 9999999999999999
Q ss_pred EECCCC--------eeeeeee-cceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCC----cEEEEEEc
Q 004214 101 WDLRDY--------SCKLTVP-TYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGER----GIVRMWNA 167 (768)
Q Consensus 101 Wd~~~~--------~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----g~i~iwd~ 167 (768)
||+.++ +....+. +...+..++|+|++. .+++++.+ +.|++|+.
T Consensus 93 w~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-----------------------~l~~~~~~~~~~~~v~~~d~ 149 (615)
T 1pgu_A 93 WGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGR-----------------------RLCVVGEGRDNFGVFISWDS 149 (615)
T ss_dssp EEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSS-----------------------EEEEEECCSSCSEEEEETTT
T ss_pred EeCCCCcccccccccccchhhcccccEEEEEEeCCCC-----------------------EEEEeccCCCCccEEEEEEC
Confidence 999855 5555555 455699999999886 77888877 78999983
Q ss_pred CCceeeeecCCceeecccccCcccceeEEEEccCCC-ceEEEEecCeEEEEeeccCcccceeeEEEeeecccCC---cee
Q 004214 168 DSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQ-GLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNE---EIL 243 (768)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~i~ 243 (768)
.. ... ....+...+..+.|+|++. .+++++.|+.+.+|+.... .....+.+|.. .|.
T Consensus 150 ~~--~~~----------~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~-------~~~~~~~~~~~~~~~v~ 210 (615)
T 1pgu_A 150 GN--SLG----------EVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPF-------KFSASDRTHHKQGSFVR 210 (615)
T ss_dssp CC--EEE----------ECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTB-------EEEEEECSSSCTTCCEE
T ss_pred CC--cce----------eeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCc-------ceeeeecccCCCCceEE
Confidence 22 111 1223456788999999998 6889999999999997643 23445667888 899
Q ss_pred EEEEecCCCCEEEEEeCCCcEEEEECCCceeeeee-e---CCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceE
Q 004214 244 DLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVL-A---GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC 319 (768)
Q Consensus 244 ~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~-~---~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 319 (768)
+++|++.++.++++++.++.|++||+.+++....+ . .|...|.++. +. ++. ++++++.||.|++||+.+++.
T Consensus 211 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~--~~-~~~-~l~~~~~d~~i~~wd~~~~~~ 286 (615)
T 1pgu_A 211 DVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALS--WL-DSQ-KFATVGADATIRVWDVTTSKC 286 (615)
T ss_dssp EEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEE--ES-SSS-EEEEEETTSEEEEEETTTTEE
T ss_pred EEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEE--Ec-CCC-EEEEEcCCCcEEEEECCCCcE
Confidence 99999754899999999999999999999999888 6 8999999997 55 555 499999999999999999999
Q ss_pred EEeeecc----cCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEe-------------------
Q 004214 320 VGVGTGH----MGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVV------------------- 376 (768)
Q Consensus 320 ~~~~~~~----~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~------------------- 376 (768)
+..+..+ ...+.++.+. + ..++++++.||.|++||+.... ....+
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~-~-~~~l~~~~~~g~i~~~d~~~~~----------~~~~~~~~~~~v~~~~~~~l~~~~ 354 (615)
T 1pgu_A 287 VQKWTLDKQQLGNQQVGVVAT-G-NGRIISLSLDGTLNFYELGHDE----------VLKTISGHNKGITALTVNPLISGS 354 (615)
T ss_dssp EEEEECCTTCGGGCEEEEEEE-E-TTEEEEEETTSCEEEEETTEEE----------EEEEECCCSSCEEEEETTTTEEEE
T ss_pred EEEEcCCCCcccCceeEEEeC-C-CCeEEEEECCCCEEEEECCCCc----------EEEEEeCCCCCEEEEEecCcEEEC
Confidence 9888876 4678888886 4 3489999999999999987421 11222
Q ss_pred --------------eccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC--------------------------------
Q 004214 377 --------------AAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLP-------------------------------- 410 (768)
Q Consensus 377 --------------~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~-------------------------------- 410 (768)
..|...|.+++| +++..+++++.|+.+++|++.
T Consensus 355 ~dg~i~~w~~~~~~~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 433 (615)
T 1pgu_A 355 YDGRIMEWSSSSMHQDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQ 433 (615)
T ss_dssp TTSCEEETTTTEEECCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEE
T ss_pred CCCeEEEEEchhhcCcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEe
Confidence 345666777777 457788888888888888765
Q ss_pred --CCceEEEEeccCCCeEEEEEccCCCEEEEeeC-CCcEEEEeCCCCcee-EEeecCCCcEEEEEEEeCCCEEEEEeCCC
Q 004214 411 --DLVSVVTFRGHKRGIWSVEFSPVDQVVITASG-DKTIKIWSISDGSCL-KTFEGHTSSVLRASFLTRGAQIVSCGADG 486 (768)
Q Consensus 411 --~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~-d~~i~iwd~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 486 (768)
+++.+..+. |...+++++|+ +++|++++. |+.|++||+.++... ..+.+|...|++++|+|+|++|++++.||
T Consensus 434 ~~~~~~~~~~~-~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg 510 (615)
T 1pgu_A 434 SFTGDIIKSVR-LNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMG 510 (615)
T ss_dssp TTTCCEEEEEE-CSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred ccCCceeeecc-cCCCceEEEEc--CCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCC
Confidence 334444444 77889999999 899999999 999999999888766 67788999999999999999999999999
Q ss_pred cEEEEECCCCeEEEEecc-CCCcEEEEEEcC----------CCCEEEEEeCCCcEEEEEcCCH
Q 004214 487 LVKLWTVRTGECIATYDK-HEDKIWALAVGK----------KTEMFATGGSDALVNLWHDSTA 538 (768)
Q Consensus 487 ~i~iwd~~~~~~~~~~~~-~~~~v~~l~~s~----------~~~~l~s~~~dg~v~vw~~~~~ 538 (768)
.|++||+.+++++..+.+ |...|++++|+| ++++|++++.||.|++|++.++
T Consensus 511 ~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 573 (615)
T 1pgu_A 511 KILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRP 573 (615)
T ss_dssp CEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCT
T ss_pred eEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCC
Confidence 999999999999999988 999999999999 9999999999999999999875
No 11
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=5.4e-46 Score=433.76 Aligned_cols=452 Identities=13% Similarity=0.170 Sum_probs=376.4
Q ss_pred EEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEE
Q 004214 22 CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLW 101 (768)
Q Consensus 22 ~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vW 101 (768)
..+.+.+|.+.|++++|+|++++ ||+|+.||.|+|||+.+++.+..+.+|.++|++++|+|++++|++++.||.|++|
T Consensus 5 ~~~~~~~h~~~v~~i~~sp~~~~--la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw 82 (814)
T 3mkq_A 5 IKKTFSNRSDRVKGIDFHPTEPW--VLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF 82 (814)
T ss_dssp CEEEEEEECSCEEEEEECSSSSE--EEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred cceeeecCCCceEEEEECCCCCE--EEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEE
Confidence 46789999999999999999987 9999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCeeeeeee-cceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCc-eeeeecCCc
Q 004214 102 DLRDYSCKLTVP-TYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSA-CLYEQKSSD 179 (768)
Q Consensus 102 d~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~-~~~~~~~~~ 179 (768)
|+.+++.+..+. +...+.+++|+|++. .+++++.+|.|++|++.++ .....
T Consensus 83 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~-----------------------~l~~~~~dg~i~vw~~~~~~~~~~~---- 135 (814)
T 3mkq_A 83 NYNTGEKVVDFEAHPDYIRSIAVHPTKP-----------------------YVLSGSDDLTVKLWNWENNWALEQT---- 135 (814)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSSS-----------------------EEEEEETTSEEEEEEGGGTSEEEEE----
T ss_pred ECCCCcEEEEEecCCCCEEEEEEeCCCC-----------------------EEEEEcCCCEEEEEECCCCceEEEE----
Confidence 999999988887 445699999999886 8899999999999999876 22211
Q ss_pred eeecccccCcccceeEEEEcc-CCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEec-CCCCEEEE
Q 004214 180 VTISFEMDDSKRGFTAATVLP-SNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLG-EEEQYLAV 257 (768)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~l~~ 257 (768)
...+...+..+.++| ++..+++++.||.+.+|+....... ......+...+..++|++ +++.++++
T Consensus 136 ------~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~------~~~~~~~~~~v~~~~~~~~~~~~~l~~ 203 (814)
T 3mkq_A 136 ------FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN------FTLTTGQERGVNYVDYYPLPDKPYMIT 203 (814)
T ss_dssp ------EECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCS------EEEECCCTTCCCEEEECCSTTCCEEEE
T ss_pred ------EcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcce------eEEecCCCCCEEEEEEEECCCCCEEEE
Confidence 112345688899999 7788999999999999998654321 112234457899999986 37789999
Q ss_pred EeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEec
Q 004214 258 ATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSK 337 (768)
Q Consensus 258 ~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~ 337 (768)
++.+|.|++||..++.....+.+|...|.++. +.+++.. +++++.||.|++||+.+++....+..|...+.+++|+|
T Consensus 204 ~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~--~~~~~~~-l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~ 280 (814)
T 3mkq_A 204 ASDDLTIKIWDYQTKSCVATLEGHMSNVSFAV--FHPTLPI-IISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHP 280 (814)
T ss_dssp ECTTSEEEEEETTTTEEEEEEECCSSCEEEEE--ECSSSSE-EEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECT
T ss_pred EeCCCEEEEEECCCCcEEEEEcCCCCCEEEEE--EcCCCCE-EEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEcc
Confidence 99999999999999999999999999999997 7777765 99999999999999999999999999999999999999
Q ss_pred CCCcEEEEEeCCCeEEEEeCCCCCCCCccccc---------------------------------cceeeEeeccCCCeE
Q 004214 338 KLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMN---------------------------------LKAKAVVAAHGKDIN 384 (768)
Q Consensus 338 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---------------------------------~~~~~~~~~~~~~i~ 384 (768)
++..++++++.++.+.+|++............ .........+...+.
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (814)
T 3mkq_A 281 TGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQ 360 (814)
T ss_dssp TCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCS
T ss_pred CCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCc
Confidence 98765566666778889987653211100000 001112234556789
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCC
Q 004214 385 SLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHT 464 (768)
Q Consensus 385 ~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~ 464 (768)
+++|+|+|+++++++ ++.+.+|++...... +.+.+.+++|+|+++++++++.+|.|++|+. +.+|.
T Consensus 361 ~~~~spdg~~la~~~-~~~~~i~~~~~~~~~-----~~~~i~~~~~spdg~~la~~~~~g~v~l~~~--------~~~~~ 426 (814)
T 3mkq_A 361 SLAHSPNGRFVTVVG-DGEYVIYTALAWRNK-----AFGKCQDFVWGPDSNSYALIDETGQIKYYKN--------FKEVT 426 (814)
T ss_dssp EEEECTTSSEEEEEE-TTEEEEEETTTTEEE-----EEEECSEEEECTTSSCEEEECTTCCEEEEET--------TEECT
T ss_pred eeEECCCCCEEEEec-CCEEEEEECcccccc-----CCCceEEEEEeCCCCeEEEEeCCCcEEEEEC--------CCCcc
Confidence 999999999999998 899999998755432 3457889999999999999999999999963 45688
Q ss_pred CcEEEEEEEeCC---CEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEE------eCCCcEEEEE
Q 004214 465 SSVLRASFLTRG---AQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATG------GSDALVNLWH 534 (768)
Q Consensus 465 ~~v~~~~~s~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~------~~dg~v~vw~ 534 (768)
..+.++.|+|+| .+|++++.||.|++||+.+++++..+..|.. .+.|+|+|++|+++ +.++.+.+|.
T Consensus 427 ~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~---~v~~s~dg~~la~~~~~~~~~~~~~~~~~~ 502 (814)
T 3mkq_A 427 SWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGTLVRRIDVNAK---DVIWSDNGELVMIVNTNSNGDEASGYTLLF 502 (814)
T ss_dssp TCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCCEEEEESSCEE---EEEECTTSSEEEEEECCCSSCSCSEEEEEE
T ss_pred ceEEcCCcCccceecceEEEEecCCEEEEEECCcCcEEEEEecCCC---EEEEcCCCCEEEEEEcCcccCCceEEEEEe
Confidence 889999999998 6889999999999999999999999987764 89999999999999 6655555554
No 12
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=7.7e-44 Score=415.60 Aligned_cols=467 Identities=12% Similarity=0.133 Sum_probs=375.7
Q ss_pred EEEeecCCCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEE
Q 004214 2 FALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMA 81 (768)
Q Consensus 2 ~latg~~dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~ 81 (768)
+||+|+.||.|+|||+.++..+..+.+|.+.|++++|+|++++ |++|+.||.|+|||+.+++.+..+.+|.+.|++++
T Consensus 27 ~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~--l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~ 104 (814)
T 3mkq_A 27 WVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNW--IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIA 104 (814)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTE--EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred EEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCE--EEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEE
Confidence 6899999999999999999999999999999999999999887 99999999999999999999999999999999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCC-eeeeeeec-ceeEeeEEecC-CCCCccccccccchhhhhcccCCcceEEEEeeC
Q 004214 82 ITSDGSTLISAGRDKVVNLWDLRDY-SCKLTVPT-YEMVEAVCAIP-PGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGE 158 (768)
Q Consensus 82 fs~d~~~L~s~~~dg~i~vWd~~~~-~~~~~~~~-~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (768)
|+|++++|++++.||.|++||+.++ .....+.. ...+.+++|+| ++. .+++++.
T Consensus 105 ~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-----------------------~l~~~~~ 161 (814)
T 3mkq_A 105 VHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPS-----------------------TFASGCL 161 (814)
T ss_dssp ECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEE-----------------------EEEEEET
T ss_pred EeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCC-----------------------EEEEEeC
Confidence 9999999999999999999999987 55555553 45688999998 443 8999999
Q ss_pred CcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEcc--CCCceEEEEecCeEEEEeeccCcccceeeEEEeeec
Q 004214 159 RGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLP--SNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLV 236 (768)
Q Consensus 159 ~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~ 236 (768)
+|.|++||+.++....... ......+..+.++| ++..+++++.+|.+.+|+..... ....+.
T Consensus 162 dg~v~vwd~~~~~~~~~~~---------~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~-------~~~~~~ 225 (814)
T 3mkq_A 162 DRTVKVWSLGQSTPNFTLT---------TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS-------CVATLE 225 (814)
T ss_dssp TSEEEEEETTCSSCSEEEE---------CCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTE-------EEEEEE
T ss_pred CCeEEEEECCCCcceeEEe---------cCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCc-------EEEEEc
Confidence 9999999997763221111 11225677888888 88889999999999999987542 344556
Q ss_pred ccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCC
Q 004214 237 GYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES 316 (768)
Q Consensus 237 ~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 316 (768)
+|...|.+++|++ +++++++++.+|.|++||+.++.....+..|...+.+++ +.+++..++++++.++.+.+|++..
T Consensus 226 ~~~~~v~~~~~~~-~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (814)
T 3mkq_A 226 GHMSNVSFAVFHP-TLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIA--THPTGRKNYIASGFDNGFTVLSLGN 302 (814)
T ss_dssp CCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEE--ECTTCGGGEEEEEETTEEEEEECSC
T ss_pred CCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEE--EccCCCceEEEEEeCCCEEEEEcCC
Confidence 7889999999985 677999999999999999999999999999999999998 7788775445555577788888654
Q ss_pred ce----------EEE---------------------------------eeecccCcEEEEEEecCCCcEEEEEeCCCeEE
Q 004214 317 RC----------CVG---------------------------------VGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIK 353 (768)
Q Consensus 317 ~~----------~~~---------------------------------~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~ 353 (768)
.. .+. ....+...+.+++|+|++. ++++++ ++.+.
T Consensus 303 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~-~la~~~-~~~~~ 380 (814)
T 3mkq_A 303 DEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGR-FVTVVG-DGEYV 380 (814)
T ss_dssp CSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSS-EEEEEE-TTEEE
T ss_pred CCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCC-EEEEec-CCEEE
Confidence 22 111 1123445678999999977 677777 89999
Q ss_pred EEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccC
Q 004214 354 VWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPV 433 (768)
Q Consensus 354 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~ 433 (768)
+|++... . ..+...+.+++|+|+++++++++.+|.|++|+. +.+|...+.+++|+|+
T Consensus 381 i~~~~~~----------~-----~~~~~~i~~~~~spdg~~la~~~~~g~v~l~~~--------~~~~~~~v~~~~~s~d 437 (814)
T 3mkq_A 381 IYTALAW----------R-----NKAFGKCQDFVWGPDSNSYALIDETGQIKYYKN--------FKEVTSWSVPMHSAID 437 (814)
T ss_dssp EEETTTT----------E-----EEEEEECSEEEECTTSSCEEEECTTCCEEEEET--------TEECTTCCCCCSSCCC
T ss_pred EEECccc----------c-----ccCCCceEEEEEeCCCCeEEEEeCCCcEEEEEC--------CCCccceEEcCCcCcc
Confidence 9997522 0 123456889999999999999999999999963 4568888999999999
Q ss_pred C---CEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEE------eCCCcEEEEE------------
Q 004214 434 D---QVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSC------GADGLVKLWT------------ 492 (768)
Q Consensus 434 ~---~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~------~~dg~i~iwd------------ 492 (768)
+ ..|++++.|+.|++||+.+++++..+..|.. .+.|+|+|++|+++ +.++.+.+|-
T Consensus 438 g~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~---~v~~s~dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (814)
T 3mkq_A 438 RLFSGALLGVKSDGFVYFFDWDNGTLVRRIDVNAK---DVIWSDNGELVMIVNTNSNGDEASGYTLLFNKDAYLEAANNG 514 (814)
T ss_dssp EEECSSSEEEEETTEEEEECTTTCCEEEEESSCEE---EEEECTTSSEEEEEECCCSSCSCSEEEEEECHHHHHHHHHHT
T ss_pred ceecceEEEEecCCEEEEEECCcCcEEEEEecCCC---EEEEcCCCCEEEEEEcCcccCCceEEEEEechHHhhhhhhcc
Confidence 8 6888999999999999999999999987765 89999999999999 5555444432
Q ss_pred -----------------------------------CCCCe-------EEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcE
Q 004214 493 -----------------------------------VRTGE-------CIATYDKHEDKIWALAVGKKTEMFATGGSDALV 530 (768)
Q Consensus 493 -----------------------------------~~~~~-------~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v 530 (768)
...+. ....+.....++..+.|.+++..++....++.+
T Consensus 515 ~~~~~~~~~~~~~~~~~~~~~i~s~~w~~~~~i~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~ 594 (814)
T 3mkq_A 515 NIDDSEGVDEAFDVLYELSESITSGKWVGDVFIFTTATNRLNYFVGGKTYNLAHYTKEMYLLGYLARDNKVYLADREVHV 594 (814)
T ss_dssp CCBTTTBCTTTEEEEEEECSCCSEEEEETTEEEEECTTSEEEEEETTEEEEEEECSSCCEEEEEEGGGTEEEEECTTCCE
T ss_pred CCccccchhhheeeeeEeccEEEeeEEeCCEEEEEcCCCeEEEEeCCeeEEEEECCccEEEEEEEecCCEEEEEcCCCCE
Confidence 10000 001111233455556677888899999999999
Q ss_pred EEEEcCCHHH
Q 004214 531 NLWHDSTAAE 540 (768)
Q Consensus 531 ~vw~~~~~~~ 540 (768)
..|.+.....
T Consensus 595 ~~~~l~~~~~ 604 (814)
T 3mkq_A 595 YGYEISLEVL 604 (814)
T ss_dssp EEEECCHHHH
T ss_pred EEEEECcHHH
Confidence 9999876543
No 13
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=6.2e-44 Score=379.18 Aligned_cols=290 Identities=27% Similarity=0.547 Sum_probs=263.2
Q ss_pred EEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 004214 23 THYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWD 102 (768)
Q Consensus 23 ~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd 102 (768)
...+.||.+.|++++|+|++.. +++|+.||+|+|||+.+++....+.+|...|++++|+|++++|++++.|++|++||
T Consensus 101 ~~~l~gh~~~V~~~~~~p~~~~--l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd 178 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPVFSV--MVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWD 178 (410)
T ss_dssp SCEEECCSSCEEEEEECSSSSE--EEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEE
T ss_pred eEeecccCCcEEEEEEcCCCCE--EEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEe
Confidence 4578899999999999999877 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceee
Q 004214 103 LRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTI 182 (768)
Q Consensus 103 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~ 182 (768)
+.+++++
T Consensus 179 ~~~~~~~------------------------------------------------------------------------- 185 (410)
T 1vyh_C 179 FQGFECI------------------------------------------------------------------------- 185 (410)
T ss_dssp TTSSCEE-------------------------------------------------------------------------
T ss_pred CCCCcee-------------------------------------------------------------------------
Confidence 8654321
Q ss_pred cccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCC
Q 004214 183 SFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIE 262 (768)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~ 262 (768)
T Consensus 186 -------------------------------------------------------------------------------- 185 (410)
T 1vyh_C 186 -------------------------------------------------------------------------------- 185 (410)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcE
Q 004214 263 QVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNF 342 (768)
Q Consensus 263 ~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 342 (768)
..+.+|...|.++. +.+++.. +++|+.|+.|++||+.++.++..+.+|...|.++.++|++. +
T Consensus 186 -------------~~~~~h~~~V~~v~--~~p~~~~-l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~-~ 248 (410)
T 1vyh_C 186 -------------RTMHGHDHNVSSVS--IMPNGDH-IVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGT-L 248 (410)
T ss_dssp -------------ECCCCCSSCEEEEE--ECSSSSE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSS-E
T ss_pred -------------EEEcCCCCCEEEEE--EeCCCCE-EEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCC-E
Confidence 13345666777776 6666665 99999999999999999999999999999999999999966 8
Q ss_pred EEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccC--------------------CCEEEEEeCCC
Q 004214 343 LVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN--------------------DSLVCTGSQDR 402 (768)
Q Consensus 343 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--------------------~~~l~~~~~dg 402 (768)
+++|+.|++|++||+... .....+..|...|.+++|+|+ +.+|++|+.|+
T Consensus 249 l~s~s~D~~v~vwd~~~~----------~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~ 318 (410)
T 1vyh_C 249 IASCSNDQTVRVWVVATK----------ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDK 318 (410)
T ss_dssp EEEEETTSCEEEEETTTC----------CEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTS
T ss_pred EEEEcCCCeEEEEECCCC----------ceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCC
Confidence 999999999999999743 355567789999999999996 67899999999
Q ss_pred cEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEE
Q 004214 403 TACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSC 482 (768)
Q Consensus 403 ~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 482 (768)
+|++||+.++..+..+.+|...|++++|+|++++|++|+.||+|++||+.+++++.++.+|...|++++|+|++.+|++|
T Consensus 319 ~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg 398 (410)
T 1vyh_C 319 TIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTG 398 (410)
T ss_dssp EEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEE
T ss_pred eEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCcEEEEECC
Q 004214 483 GADGLVKLWTVR 494 (768)
Q Consensus 483 ~~dg~i~iwd~~ 494 (768)
+.||+|++|+++
T Consensus 399 s~D~~i~vW~~r 410 (410)
T 1vyh_C 399 SVDQTVKVWECR 410 (410)
T ss_dssp ETTSEEEEEC--
T ss_pred eCCCcEEEEeCC
Confidence 999999999863
No 14
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.8e-43 Score=360.50 Aligned_cols=291 Identities=24% Similarity=0.383 Sum_probs=266.8
Q ss_pred EeeecccCCceeEEEEecC---CCCEEEEEeCCCcEEEEECCCcee--eeeeeCCccceEEEeeeeecCCCEEEEEEeCC
Q 004214 232 SKRLVGYNEEILDLKFLGE---EEQYLAVATNIEQVQVYDLSSMSC--SYVLAGHSEIVLCLDTCALSSGKILIVTGSKD 306 (768)
Q Consensus 232 ~~~~~~~~~~i~~~~~~~~---~~~~l~~~~~~~~i~i~d~~~~~~--~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~d 306 (768)
.+...+|.+.|.+++|++. ++.+|++|+.|+.|++|++..+.. ...+.+|...|.+++ +.+++.. +++++.|
T Consensus 25 ~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~--~~~~~~~-l~s~s~D 101 (321)
T 3ow8_A 25 FKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVD--ISHTLPI-AASSSLD 101 (321)
T ss_dssp EEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEE--ECSSSSE-EEEEETT
T ss_pred eeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEE--ECCCCCE-EEEEeCC
Confidence 3566789999999999864 567999999999999999887654 446899999999997 6666665 9999999
Q ss_pred CeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEE
Q 004214 307 NSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSL 386 (768)
Q Consensus 307 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 386 (768)
+.|++||+.+++.+..+..|...+.+++|+|+++ ++++++.||.|++|++... ........|...|.++
T Consensus 102 ~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~-~l~~g~~dg~v~i~~~~~~----------~~~~~~~~~~~~v~~~ 170 (321)
T 3ow8_A 102 AHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQ-YLATGTHVGKVNIFGVESG----------KKEYSLDTRGKFILSI 170 (321)
T ss_dssp SEEEEEETTTTEEEEEEECCTTCCCCEEECTTSS-EEEEECTTSEEEEEETTTC----------SEEEEEECSSSCEEEE
T ss_pred CcEEEEECCCCCEEEEEeCCCccEEEEEECCCCC-EEEEEcCCCcEEEEEcCCC----------ceeEEecCCCceEEEE
Confidence 9999999999999999999999999999999976 8999999999999999743 2445566788899999
Q ss_pred EEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCc
Q 004214 387 AVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSS 466 (768)
Q Consensus 387 ~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~ 466 (768)
+|+|++++|++|+.||.|++||+.+++.+..+.+|..+|++++|+|++++|++|+.|++|++||++++.++..+.+|...
T Consensus 171 ~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~ 250 (321)
T 3ow8_A 171 AYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASW 250 (321)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSC
T ss_pred EECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 004214 467 VLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDS 536 (768)
Q Consensus 467 v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~ 536 (768)
|++++|+|++++|++++.||+|++||+.+++++.++.+|...|++++|+|++.+|++++.||.|++|+..
T Consensus 251 v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 251 VLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred eEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999963
No 15
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=5.9e-43 Score=362.08 Aligned_cols=294 Identities=24% Similarity=0.412 Sum_probs=260.6
Q ss_pred CEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEE
Q 004214 20 GFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVN 99 (768)
Q Consensus 20 ~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~ 99 (768)
......+.||.+.|++++|+|++++ |++|+.||+|+|||+.+++.+..+..|...|.+++|+|++++|++++.|+.|+
T Consensus 45 ~~~~~~l~gH~~~v~~~~~s~d~~~--l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~ 122 (340)
T 1got_B 45 MRTRRTLRGHLAKIYAMHWGTDSRL--LLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICS 122 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSE--EEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEE
T ss_pred chhheeecCCCCceEEEEECCCCCE--EEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEE
Confidence 4567889999999999999999887 99999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCc
Q 004214 100 LWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSD 179 (768)
Q Consensus 100 vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~ 179 (768)
+|++.+....
T Consensus 123 iw~~~~~~~~---------------------------------------------------------------------- 132 (340)
T 1got_B 123 IYNLKTREGN---------------------------------------------------------------------- 132 (340)
T ss_dssp EEETTTCSBS----------------------------------------------------------------------
T ss_pred EEECccCCCc----------------------------------------------------------------------
Confidence 9998653100
Q ss_pred eeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEe
Q 004214 180 VTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVAT 259 (768)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 259 (768)
T Consensus 133 -------------------------------------------------------------------------------- 132 (340)
T 1got_B 133 -------------------------------------------------------------------------------- 132 (340)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCC
Q 004214 260 NIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKL 339 (768)
Q Consensus 260 ~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 339 (768)
......+.+|...+.++. +.++ +. +++++.||.|++||+.+++.+..+.+|.+.|.+++|+|++
T Consensus 133 ------------~~~~~~~~~h~~~v~~~~--~~~~-~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~ 196 (340)
T 1got_B 133 ------------VRVSRELAGHTGYLSCCR--FLDD-NQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT 196 (340)
T ss_dssp ------------CEEEEEEECCSSCEEEEE--EEET-TE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS
T ss_pred ------------ceeEEEecCCCccEEEEE--ECCC-Cc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCC
Confidence 001113445677777775 4443 44 8999999999999999999999999999999999999996
Q ss_pred CcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEe
Q 004214 340 QNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFR 419 (768)
Q Consensus 340 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 419 (768)
. ++++|+.||+|++||+... .....+..|...|++++|+|++++|++|+.||+|++||+++++.+..+.
T Consensus 197 ~-~l~sg~~d~~v~~wd~~~~----------~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~ 265 (340)
T 1got_B 197 R-LFVSGACDASAKLWDVREG----------MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS 265 (340)
T ss_dssp S-EEEEEETTSCEEEEETTTC----------SEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred C-EEEEEeCCCcEEEEECCCC----------eeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEc
Confidence 6 8999999999999999743 3556677899999999999999999999999999999999988877765
Q ss_pred c--cCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEE
Q 004214 420 G--HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWT 492 (768)
Q Consensus 420 ~--~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd 492 (768)
. +...|++++|+|++++|++|+.|+.|++||+.+++.+..+.+|...|++++|+|+|.+|++|+.||.|+|||
T Consensus 266 ~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 266 HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp CTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred cCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 3 334799999999999999999999999999999999999999999999999999999999999999999996
No 16
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=3.5e-44 Score=377.38 Aligned_cols=317 Identities=21% Similarity=0.381 Sum_probs=271.6
Q ss_pred CCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCE
Q 004214 9 DRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGST 88 (768)
Q Consensus 9 dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~ 88 (768)
+..+..|+.....+.+.|.||.+.|++++|+|++++ |++|+.||+|+|||+.+++.+..+.+|...|.+++|+|+|++
T Consensus 45 ~~~~~~~~~~~~~~~~~l~gH~~~V~~~~~sp~~~~--l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~ 122 (380)
T 3iz6_a 45 GRTAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNW--IVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQS 122 (380)
T ss_dssp GGGCCCCCCCCCEEEEEECCCSSCEEEEEECTTSSC--EEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSE
T ss_pred cccccccccceeEEeecccccccEEEEEEEcCCCCE--EEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCE
Confidence 345667889999999999999999999999999988 999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcC
Q 004214 89 LISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNAD 168 (768)
Q Consensus 89 L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~ 168 (768)
|++++.|+.+++||+.+.... .+
T Consensus 123 las~~~d~~v~iw~~~~~~~~----------------~~----------------------------------------- 145 (380)
T 3iz6_a 123 VACGGLDSACSIFNLSSQADR----------------DG----------------------------------------- 145 (380)
T ss_dssp EEECCSSSCCEEEECCCCSSC----------------CC-----------------------------------------
T ss_pred EEEeeCCCcEEEEECCCCccc----------------cC-----------------------------------------
Confidence 999999999999998653100 00
Q ss_pred CceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEe
Q 004214 169 SACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFL 248 (768)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 248 (768)
T Consensus 146 -------------------------------------------------------------------------------- 145 (380)
T 3iz6_a 146 -------------------------------------------------------------------------------- 145 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEee-----
Q 004214 249 GEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVG----- 323 (768)
Q Consensus 249 ~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----- 323 (768)
.......+.+|...+.++. +.+++...|++|+.|++|++||+.+++.+..+
T Consensus 146 ----------------------~~~~~~~~~gh~~~v~~~~--~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~ 201 (380)
T 3iz6_a 146 ----------------------NMPVSRVLTGHKGYASSCQ--YVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFP 201 (380)
T ss_dssp ----------------------SSTTCCBCCCCSSCCCCCB--CCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSS
T ss_pred ----------------------CccceeeccCCCcceEEEE--EecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccC
Confidence 0001113455666666665 55655545889999999999999988887766
Q ss_pred ecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCc
Q 004214 324 TGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRT 403 (768)
Q Consensus 324 ~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~ 403 (768)
.+|...|.++++++....++++|+.|++|++||++.. ......+.+|...|++++|+|++++|++|+.||+
T Consensus 202 ~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~---------~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~ 272 (380)
T 3iz6_a 202 SGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRIT---------SRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGT 272 (380)
T ss_dssp SSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTT---------CCCCEEECCCSSCCCEEEECTTSSEEEEECSSSC
T ss_pred CCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCC---------CcceEEECCcCCCeEEEEEecCCCeEEEEcCCCe
Confidence 6799999999998855669999999999999999732 1245566789999999999999999999999999
Q ss_pred EEEEeCCCCceEEEEeccCC-------CeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEe----ecCCCcEEEEEE
Q 004214 404 ACVWRLPDLVSVVTFRGHKR-------GIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTF----EGHTSSVLRASF 472 (768)
Q Consensus 404 i~i~d~~~~~~~~~~~~~~~-------~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~----~~~~~~v~~~~~ 472 (768)
|++||++++..+..+..+.. .|++++|+|+|++|++|+.||.|++||+..++.+..+ .+|.+.|++++|
T Consensus 273 i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~ 352 (380)
T 3iz6_a 273 CRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGL 352 (380)
T ss_dssp EEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEE
T ss_pred EEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEE
Confidence 99999999998888765432 4899999999999999999999999999999988887 689999999999
Q ss_pred EeCCCEEEEEeCCCcEEEEECCCCe
Q 004214 473 LTRGAQIVSCGADGLVKLWTVRTGE 497 (768)
Q Consensus 473 s~~~~~l~s~~~dg~i~iwd~~~~~ 497 (768)
+|+|++|++|+.||+|++|++...+
T Consensus 353 s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 353 SSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp CSSSSEEEEECTTSCEEEEECCSSS
T ss_pred CCCCCEEEEeeCCCCEEEEecCCCc
Confidence 9999999999999999999987653
No 17
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=3.1e-43 Score=373.81 Aligned_cols=288 Identities=26% Similarity=0.448 Sum_probs=270.4
Q ss_pred eeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEE
Q 004214 233 KRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLW 312 (768)
Q Consensus 233 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iw 312 (768)
..+.+|..+|.+++|+| ++.++++|+.||.|++||+.+++....+.+|...|.+++ +.+++.. |++|+.||+|++|
T Consensus 102 ~~l~gh~~~V~~~~~~p-~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~--~~~~~~~-l~sgs~D~~i~iw 177 (410)
T 1vyh_C 102 YALSGHRSPVTRVIFHP-VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDIS--FDHSGKL-LASCSADMTIKLW 177 (410)
T ss_dssp CEEECCSSCEEEEEECS-SSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEE--ECTTSSE-EEEEETTSCCCEE
T ss_pred EeecccCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEE--EcCCCCE-EEEEeCCCeEEEE
Confidence 34668999999999986 678999999999999999999999999999999999997 6676665 9999999999999
Q ss_pred eCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCC
Q 004214 313 DSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND 392 (768)
Q Consensus 313 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 392 (768)
|+.+++++..+.+|...|.+++|+|++. ++++|+.|++|++||+..+ .....+.+|...|.+++++|++
T Consensus 178 d~~~~~~~~~~~~h~~~V~~v~~~p~~~-~l~s~s~D~~i~~wd~~~~----------~~~~~~~~h~~~v~~~~~~~~g 246 (410)
T 1vyh_C 178 DFQGFECIRTMHGHDHNVSSVSIMPNGD-HIVSASRDKTIKMWEVQTG----------YCVKTFTGHREWVRMVRPNQDG 246 (410)
T ss_dssp ETTSSCEEECCCCCSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTC----------CEEEEEECCSSCEEEEEECTTS
T ss_pred eCCCCceeEEEcCCCCCEEEEEEeCCCC-EEEEEeCCCeEEEEECCCC----------cEEEEEeCCCccEEEEEECCCC
Confidence 9999999999999999999999999966 8999999999999999843 3556678899999999999999
Q ss_pred CEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccC--------------------CCEEEEeeCCCcEEEEeCC
Q 004214 393 SLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPV--------------------DQVVITASGDKTIKIWSIS 452 (768)
Q Consensus 393 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~--------------------~~~l~t~~~d~~i~iwd~~ 452 (768)
.++++|+.|++|++||+.+++....+.+|...|.+++|+|+ +.+|++|+.|++|++||+.
T Consensus 247 ~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~ 326 (410)
T 1vyh_C 247 TLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS 326 (410)
T ss_dssp SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETT
T ss_pred CEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECC
Confidence 99999999999999999999999999999999999999996 6799999999999999999
Q ss_pred CCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEE
Q 004214 453 DGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNL 532 (768)
Q Consensus 453 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~v 532 (768)
++.++..+.+|...|++++|+|+|++|++|+.||.|++||+.+++++.++.+|...|++++|+|++.+|++|+.||.|++
T Consensus 327 ~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~v 406 (410)
T 1vyh_C 327 TGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKV 406 (410)
T ss_dssp TTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEE
T ss_pred CCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEc
Q 004214 533 WHD 535 (768)
Q Consensus 533 w~~ 535 (768)
|+.
T Consensus 407 W~~ 409 (410)
T 1vyh_C 407 WEC 409 (410)
T ss_dssp EC-
T ss_pred EeC
Confidence 985
No 18
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.7e-42 Score=354.71 Aligned_cols=295 Identities=22% Similarity=0.345 Sum_probs=256.3
Q ss_pred CEEEEEEEcCCCcEEEEEEeeCCC--ccEEEEEeCCCcEEEEECCCCee--EEEecCccceeEEEEEcCCCCEEEEEeCC
Q 004214 20 GFCTHYFKGHKGVVSSILFHPDTD--KSLLFSGSDDATVRVWDLLAKKC--VATLDKHFSRVTSMAITSDGSTLISAGRD 95 (768)
Q Consensus 20 ~~~~~~l~gh~~~V~~l~~spd~~--~~~l~sg~~dg~I~iWd~~~~~~--~~~l~~h~~~V~~l~fs~d~~~L~s~~~d 95 (768)
+.....+.+|.+.|++++|+|++. ..+|+||+.|++|+|||+.+++. ...+.+|...|.+++|+|++.++++++.|
T Consensus 22 g~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D 101 (321)
T 3ow8_A 22 GILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLD 101 (321)
T ss_dssp EEEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETT
T ss_pred hheeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCC
Confidence 344566779999999999998632 23599999999999999987754 45789999999999999999999999999
Q ss_pred CeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeee
Q 004214 96 KVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQ 175 (768)
Q Consensus 96 g~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~ 175 (768)
++|++||+.+++++..+.
T Consensus 102 ~~i~lWd~~~~~~~~~~~-------------------------------------------------------------- 119 (321)
T 3ow8_A 102 AHIRLWDLENGKQIKSID-------------------------------------------------------------- 119 (321)
T ss_dssp SEEEEEETTTTEEEEEEE--------------------------------------------------------------
T ss_pred CcEEEEECCCCCEEEEEe--------------------------------------------------------------
Confidence 999999998765432221
Q ss_pred cCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEE
Q 004214 176 KSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYL 255 (768)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 255 (768)
T Consensus 120 -------------------------------------------------------------------------------- 119 (321)
T 3ow8_A 120 -------------------------------------------------------------------------------- 119 (321)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEE
Q 004214 256 AVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAF 335 (768)
Q Consensus 256 ~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 335 (768)
.|...+.+++ +.+++.. |++|+.||.|++|++.++.....+..|...|.+++|
T Consensus 120 ------------------------~~~~~~~~~~--~spdg~~-l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~ 172 (321)
T 3ow8_A 120 ------------------------AGPVDAWTLA--FSPDSQY-LATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAY 172 (321)
T ss_dssp ------------------------CCTTCCCCEE--ECTTSSE-EEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEE
T ss_pred ------------------------CCCccEEEEE--ECCCCCE-EEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEE
Confidence 1122223333 5566665 999999999999999999999999999999999999
Q ss_pred ecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceE
Q 004214 336 SKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSV 415 (768)
Q Consensus 336 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~ 415 (768)
+|+++ +|++|+.||.|++||+..+ .....+..|..+|++++|+|++++|++|+.||.|++||+++++..
T Consensus 173 spdg~-~lasg~~dg~i~iwd~~~~----------~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~ 241 (321)
T 3ow8_A 173 SPDGK-YLASGAIDGIINIFDIATG----------KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLA 241 (321)
T ss_dssp CTTSS-EEEEEETTSCEEEEETTTT----------EEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEE
T ss_pred CCCCC-EEEEEcCCCeEEEEECCCC----------cEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCccee
Confidence 99976 8999999999999999743 355667789999999999999999999999999999999999999
Q ss_pred EEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECC
Q 004214 416 VTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVR 494 (768)
Q Consensus 416 ~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 494 (768)
..+.+|...|.+++|+|++++|++++.|++|++||+.+++++.++.+|...|.+++|+|++++|++++.||.|++||..
T Consensus 242 ~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 242 GTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred EEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999963
No 19
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-42 Score=372.98 Aligned_cols=342 Identities=18% Similarity=0.198 Sum_probs=285.8
Q ss_pred CcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCC-ccEEEEEeCCCcEEEEEC----CCCe------eEEEecC------
Q 004214 10 RKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTD-KSLLFSGSDDATVRVWDL----LAKK------CVATLDK------ 72 (768)
Q Consensus 10 g~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~-~~~l~sg~~dg~I~iWd~----~~~~------~~~~l~~------ 72 (768)
..+.+|++...........|.+.|++++|+|+++ + ||+|+.||.|++||+ .+++ ....+..
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~--l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (425)
T 1r5m_A 25 SIDSSDDLDGFVKILKEIVKLDNIVSSTWNPLDESI--LAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSA 102 (425)
T ss_dssp ---------CCCEECEEEEECSCCSEEEECSSCTTE--EEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC-
T ss_pred cccccccchhhhhheeeeeccCceEEEEECCCCCcE--EEEecCCceEEEEEEecccCCccccccccccccccccccccc
Confidence 3466888877766666667889999999999988 6 999999999999999 8888 4555554
Q ss_pred ----ccceeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCC
Q 004214 73 ----HFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRS 148 (768)
Q Consensus 73 ----h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (768)
|.+.|++++|+|++++|++++.||.|++||. +++.
T Consensus 103 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~-~~~~---------------------------------------- 141 (425)
T 1r5m_A 103 SSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWNK-TGAL---------------------------------------- 141 (425)
T ss_dssp -----CBCEEEEEECTTSSEEEEEETTSCEEEEET-TSCE----------------------------------------
T ss_pred cccCCCCceEEEEEcCCCCEEEEEeCCCeEEEEeC-CCCe----------------------------------------
Confidence 6779999999999999999999999999983 2211
Q ss_pred cceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCccccee
Q 004214 149 LEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKME 228 (768)
Q Consensus 149 ~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~ 228 (768)
T Consensus 142 -------------------------------------------------------------------------------- 141 (425)
T 1r5m_A 142 -------------------------------------------------------------------------------- 141 (425)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCe
Q 004214 229 LILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNS 308 (768)
Q Consensus 229 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~ 308 (768)
...+.+|...|.++. +.+++.. |++++.||.
T Consensus 142 ----------------------------------------------~~~~~~~~~~v~~~~--~~~~~~~-l~~~~~d~~ 172 (425)
T 1r5m_A 142 ----------------------------------------------LNVLNFHRAPIVSVK--WNKDGTH-IISMDVENV 172 (425)
T ss_dssp ----------------------------------------------EEEECCCCSCEEEEE--ECTTSSE-EEEEETTCC
T ss_pred ----------------------------------------------eeeccCCCccEEEEE--ECCCCCE-EEEEecCCe
Confidence 112334566677775 5566655 888999999
Q ss_pred EEEEeCCCceEEEeeecccCc---------------EEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCcccccccee
Q 004214 309 VRLWDSESRCCVGVGTGHMGA---------------VGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAK 373 (768)
Q Consensus 309 i~iwd~~~~~~~~~~~~~~~~---------------v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 373 (768)
|++||+.+++.+..+..+... +.+++|+|++ .+++++.+|.|++||+... ...
T Consensus 173 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~i~~~d~~~~----------~~~ 240 (425)
T 1r5m_A 173 TILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD--KFVIPGPKGAIFVYQITEK----------TPT 240 (425)
T ss_dssp EEEEETTTTEEEEEECCC---------------CCCBSCCEEEETT--EEEEECGGGCEEEEETTCS----------SCS
T ss_pred EEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCC--EEEEEcCCCeEEEEEcCCC----------cee
Confidence 999999999888888877776 8999999974 5899999999999999853 244
Q ss_pred eEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCC
Q 004214 374 AVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISD 453 (768)
Q Consensus 374 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~ 453 (768)
.....|...|.+++|+|++++|++++.||.|++||+.+++.+..+.+|...|.+++|+|++ ++++++.|+.|++||+.+
T Consensus 241 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~ 319 (425)
T 1r5m_A 241 GKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQ 319 (425)
T ss_dssp EEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTT
T ss_pred eeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCC
Confidence 4556789999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred CceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCe--------------------EEEEeccCCC--cEEE
Q 004214 454 GSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE--------------------CIATYDKHED--KIWA 511 (768)
Q Consensus 454 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~--------------------~~~~~~~~~~--~v~~ 511 (768)
++++..+..|...|.+++|+|++++|++++.||.|++||+.+++ ++..+..|.. .|++
T Consensus 320 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 399 (425)
T 1r5m_A 320 NTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFD 399 (425)
T ss_dssp TEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEE
T ss_pred CcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEE
Confidence 99999999999999999999999999999999999999999988 8999999977 9999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEcC
Q 004214 512 LAVGKKTEMFATGGSDALVNLWHDS 536 (768)
Q Consensus 512 l~~s~~~~~l~s~~~dg~v~vw~~~ 536 (768)
++|+|++++|++++.||.|++|++.
T Consensus 400 ~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 400 LSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp EEECTTSSEEEEEESSSCCEEEECC
T ss_pred EEccCCCceEEEEecCceEEEEeec
Confidence 9999999999999999999999975
No 20
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=8.1e-42 Score=347.50 Aligned_cols=293 Identities=21% Similarity=0.309 Sum_probs=255.5
Q ss_pred EEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEE
Q 004214 22 CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLW 101 (768)
Q Consensus 22 ~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vW 101 (768)
..++|.+|.+.|++++|+|+++. |++|+.||+|++||+.++..+..+..|..+|.+++|+|++++|++++.|+.|++|
T Consensus 5 ~~~~~~~h~~~V~~~~fsp~~~~--l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vw 82 (304)
T 2ynn_A 5 IKKTFSNRSDRVKGIDFHPTEPW--VLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF 82 (304)
T ss_dssp CEEEEEEECSCEEEEEECSSSSE--EEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred eEEeecCCCCceEEEEECCCCCE--EEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEE
Confidence 45789999999999999999987 9999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCcee
Q 004214 102 DLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVT 181 (768)
Q Consensus 102 d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~ 181 (768)
|+.+++++
T Consensus 83 d~~~~~~~------------------------------------------------------------------------ 90 (304)
T 2ynn_A 83 NYNTGEKV------------------------------------------------------------------------ 90 (304)
T ss_dssp ETTTCCEE------------------------------------------------------------------------
T ss_pred ECCCCcEE------------------------------------------------------------------------
Confidence 98764321
Q ss_pred ecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCC
Q 004214 182 ISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNI 261 (768)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~ 261 (768)
T Consensus 91 -------------------------------------------------------------------------------- 90 (304)
T 2ynn_A 91 -------------------------------------------------------------------------------- 90 (304)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCc-eEEEeeecccCcEEEEEEecCCC
Q 004214 262 EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR-CCVGVGTGHMGAVGAVAFSKKLQ 340 (768)
Q Consensus 262 ~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~ 340 (768)
..+.+|...|.+++ +.+++.. +++|+.||+|++||+.++ .....+.+|...|.+++|+|.+.
T Consensus 91 --------------~~~~~h~~~v~~~~--~~~~~~~-l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~ 153 (304)
T 2ynn_A 91 --------------VDFEAHPDYIRSIA--VHPTKPY-VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDP 153 (304)
T ss_dssp --------------EEEECCSSCEEEEE--ECSSSSE-EEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCT
T ss_pred --------------EEEeCCCCcEEEEE--EcCCCCE-EEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCC
Confidence 13445667777776 6666665 999999999999999877 56677889999999999999666
Q ss_pred cEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEcc--CCCEEEEEeCCCcEEEEeCCCCceEEEE
Q 004214 341 NFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP--NDSLVCTGSQDRTACVWRLPDLVSVVTF 418 (768)
Q Consensus 341 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 418 (768)
.++++|+.|++|++||+..... .......|...+..+.|+| ++.+|++|+.|++|++||+++++++..+
T Consensus 154 ~~l~sgs~D~~v~iwd~~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~ 224 (304)
T 2ynn_A 154 STFASGCLDRTVKVWSLGQSTP---------NFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL 224 (304)
T ss_dssp TEEEEEETTSEEEEEETTCSSC---------SEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred CEEEEEeCCCeEEEEECCCCCc---------cceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceee
Confidence 6899999999999999974321 2223345667899999987 7789999999999999999999999999
Q ss_pred eccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCC--EEEEEeCCCcEEEEECCC
Q 004214 419 RGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGA--QIVSCGADGLVKLWTVRT 495 (768)
Q Consensus 419 ~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~s~~~dg~i~iwd~~~ 495 (768)
.+|...|.+++|+|++++|++|+.||+|++||+.+++++.++..|...+.+++|+|++. ++++|+.|| +.+|++.+
T Consensus 225 ~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~~~ 302 (304)
T 2ynn_A 225 EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG-FTVLSLGN 302 (304)
T ss_dssp ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTE-EEEEECC-
T ss_pred CCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCc-eEEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999875 577777665 77777654
No 21
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=8.8e-42 Score=354.89 Aligned_cols=297 Identities=23% Similarity=0.333 Sum_probs=260.6
Q ss_pred EEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEE
Q 004214 21 FCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNL 100 (768)
Q Consensus 21 ~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~v 100 (768)
.....|.||.+.|++++|+|++++ |+||+.||+|+|||..+++....+..|...|.+++|+|+|.+|++++.|+.+++
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~--l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v 132 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRR--IVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSV 132 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSE--EEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEE
T ss_pred EEEEEecCCCCeEEEEEECCCCCE--EEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEE
Confidence 457889999999999999999887 999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCce
Q 004214 101 WDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDV 180 (768)
Q Consensus 101 Wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~ 180 (768)
|++......
T Consensus 133 ~~~~~~~~~----------------------------------------------------------------------- 141 (354)
T 2pbi_B 133 YPLTFDKNE----------------------------------------------------------------------- 141 (354)
T ss_dssp EECCCCTTC-----------------------------------------------------------------------
T ss_pred EEEeccccc-----------------------------------------------------------------------
Confidence 987532100
Q ss_pred eecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeC
Q 004214 181 TISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATN 260 (768)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~ 260 (768)
T Consensus 142 -------------------------------------------------------------------------------- 141 (354)
T 2pbi_B 142 -------------------------------------------------------------------------------- 141 (354)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCC-
Q 004214 261 IEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKL- 339 (768)
Q Consensus 261 ~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~- 339 (768)
........+.+|...|.++. +.+++.. +++++.||+|++||+.+++++..+.+|...|.+++++|..
T Consensus 142 ---------~~~~~~~~~~~h~~~v~~~~--~~~~~~~-l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~ 209 (354)
T 2pbi_B 142 ---------NMAAKKKSVAMHTNYLSACS--FTNSDMQ-ILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSET 209 (354)
T ss_dssp ---------CSGGGCEEEEECSSCEEEEE--ECSSSSE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSS
T ss_pred ---------cccccceeeeccCCcEEEEE--EeCCCCE-EEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCC
Confidence 00001113345777777776 6666665 9999999999999999999999999999999999998853
Q ss_pred CcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEe
Q 004214 340 QNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFR 419 (768)
Q Consensus 340 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 419 (768)
..++++|+.||.|++||++.+ .....+..|...|++++|+|++.+|++|+.|++|++||+++.+.+..+.
T Consensus 210 g~~l~sgs~Dg~v~~wd~~~~----------~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~ 279 (354)
T 2pbi_B 210 GNTFVSGGCDKKAMVWDMRSG----------QCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYS 279 (354)
T ss_dssp CCEEEEEETTSCEEEEETTTC----------CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred CCEEEEEeCCCeEEEEECCCC----------cEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEc
Confidence 358999999999999999843 3556677899999999999999999999999999999999988777666
Q ss_pred cc--CCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEE
Q 004214 420 GH--KRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWT 492 (768)
Q Consensus 420 ~~--~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd 492 (768)
.+ ...+.+++|+|++++|++|+.|++|++||+.+++++..+.+|...|++++|+|+|++|++|+.||+|++|+
T Consensus 280 ~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 280 KESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp CTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 43 34789999999999999999999999999999999999999999999999999999999999999999996
No 22
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=2e-41 Score=350.61 Aligned_cols=289 Identities=21% Similarity=0.348 Sum_probs=265.2
Q ss_pred EEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeE
Q 004214 230 ILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSV 309 (768)
Q Consensus 230 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i 309 (768)
.....+.+|.+.|.+++|++ +++++++++.||.|++||..++.....+..|...|.+++ +.+++.. +++|+.|+.|
T Consensus 46 ~~~~~l~gH~~~v~~~~~s~-d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~--~s~~~~~-l~s~~~d~~v 121 (340)
T 1got_B 46 RTRRTLRGHLAKIYAMHWGT-DSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCA--YAPSGNY-VACGGLDNIC 121 (340)
T ss_dssp CEEEEECCCSSCEEEEEECT-TSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEE--ECTTSSE-EEEEETTCEE
T ss_pred hhheeecCCCCceEEEEECC-CCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEE--ECCCCCE-EEEEeCCCeE
Confidence 34567889999999999985 788999999999999999999999999999999999997 7777765 9999999999
Q ss_pred EEEeCCCc----eEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEE
Q 004214 310 RLWDSESR----CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINS 385 (768)
Q Consensus 310 ~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 385 (768)
++|++.++ .....+.+|.+.|.++.|++++ .+++++.|++|++||+..+ .....+.+|...|.+
T Consensus 122 ~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~l~s~s~d~~i~~wd~~~~----------~~~~~~~~h~~~v~~ 189 (340)
T 1got_B 122 SIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN--QIVTSSGDTTCALWDIETG----------QQTTTFTGHTGDVMS 189 (340)
T ss_dssp EEEETTTCSBSCEEEEEEECCSSCEEEEEEEETT--EEEEEETTSCEEEEETTTT----------EEEEEECCCSSCEEE
T ss_pred EEEECccCCCcceeEEEecCCCccEEEEEECCCC--cEEEEECCCcEEEEECCCC----------cEEEEEcCCCCceEE
Confidence 99999865 4566788999999999999985 4899999999999999743 355667789999999
Q ss_pred EEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeec--C
Q 004214 386 LAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEG--H 463 (768)
Q Consensus 386 ~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~--~ 463 (768)
++|+|+++++++|+.||.|++||++++.....+.+|...|++++|+|++++|++|+.||+|++||+++++.+..+.. +
T Consensus 190 ~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~ 269 (340)
T 1got_B 190 LSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNI 269 (340)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTC
T ss_pred EEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988887763 3
Q ss_pred CCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004214 464 TSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 534 (768)
Q Consensus 464 ~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~ 534 (768)
...|++++|+|+|++|++|+.||.|++||+.+++.+..+.+|.++|++++|+|++.+|++|+.||.|++|+
T Consensus 270 ~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 270 ICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp CSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred ccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 35799999999999999999999999999999999999999999999999999999999999999999996
No 23
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=3.8e-41 Score=342.55 Aligned_cols=293 Identities=24% Similarity=0.369 Sum_probs=263.2
Q ss_pred EEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeE
Q 004214 230 ILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSV 309 (768)
Q Consensus 230 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i 309 (768)
...+.+.+|.+.|.+++|+| +++++++++.||.|++||+.++..+..+..|..+|.++. +.+++.. |++|+.|+.|
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp-~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~--~~~~~~~-l~s~s~d~~i 79 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHP-TEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGK--FIARKNW-IIVGSDDFRI 79 (304)
T ss_dssp CCEEEEEEECSCEEEEEECS-SSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEE--EEGGGTE-EEEEETTSEE
T ss_pred eeEEeecCCCCceEEEEECC-CCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEE--EeCCCCE-EEEECCCCEE
Confidence 34566788999999999985 778999999999999999999999999999999999997 7777776 9999999999
Q ss_pred EEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEc
Q 004214 310 RLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVA 389 (768)
Q Consensus 310 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 389 (768)
++||+.+++.+..+.+|...|.+++|+|+++ ++++|+.|++|++||+... ......+.+|...|.+++|+
T Consensus 80 ~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~sgs~D~~v~lWd~~~~---------~~~~~~~~~h~~~v~~v~~~ 149 (304)
T 2ynn_A 80 RVFNYNTGEKVVDFEAHPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWENN---------WALEQTFEGHEHFVMCVAFN 149 (304)
T ss_dssp EEEETTTCCEEEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEEGGGT---------TEEEEEECCCCSCEEEEEEC
T ss_pred EEEECCCCcEEEEEeCCCCcEEEEEEcCCCC-EEEEECCCCeEEEEECCCC---------cchhhhhcccCCcEEEEEEC
Confidence 9999999999999999999999999999966 8999999999999998742 12445677899999999999
Q ss_pred c-CCCEEEEEeCCCcEEEEeCCCCceEEEEe-ccCCCeEEEEEcc--CCCEEEEeeCCCcEEEEeCCCCceeEEeecCCC
Q 004214 390 P-NDSLVCTGSQDRTACVWRLPDLVSVVTFR-GHKRGIWSVEFSP--VDQVVITASGDKTIKIWSISDGSCLKTFEGHTS 465 (768)
Q Consensus 390 ~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~v~~s~--~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~ 465 (768)
| ++.+|++|+.|++|++||+.+......+. +|...+..++|+| ++.+|++|+.|++|++||+++++++.++.+|..
T Consensus 150 p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~ 229 (304)
T 2ynn_A 150 PKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMS 229 (304)
T ss_dssp TTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSS
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCC
Confidence 9 67899999999999999998887666554 4668899999987 678999999999999999999999999999999
Q ss_pred cEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCC--EEEEEeCCCcEEEEEcCC
Q 004214 466 SVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTE--MFATGGSDALVNLWHDST 537 (768)
Q Consensus 466 ~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~--~l~s~~~dg~v~vw~~~~ 537 (768)
.|.+++|+|++++|++|+.||+|++||+.+++++.++..|...+++++|+|++. ++++|+.|| +.+|++..
T Consensus 230 ~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~~~ 302 (304)
T 2ynn_A 230 NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG-FTVLSLGN 302 (304)
T ss_dssp CEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTE-EEEEECC-
T ss_pred CEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCc-eEEEEecc
Confidence 999999999999999999999999999999999999999999999999999875 577777666 67777664
No 24
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=3.1e-42 Score=358.56 Aligned_cols=310 Identities=18% Similarity=0.227 Sum_probs=240.8
Q ss_pred cCCCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeC------CCcEEEEECCCCeeE----EEecCccce
Q 004214 7 GADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSD------DATVRVWDLLAKKCV----ATLDKHFSR 76 (768)
Q Consensus 7 ~~dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~------dg~I~iWd~~~~~~~----~~l~~h~~~ 76 (768)
+.+.....|++... ...+|...|++++|||||++ ||+|+. |+.|++|+..++... ....+|...
T Consensus 23 ~g~~~~~~w~~p~~----~p~~H~~~V~~v~fSpDG~~--las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~ 96 (357)
T 4g56_B 23 NGSSKGSAWGRPVT----APACMEVQIGAVRYRRDGAL--LLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAG 96 (357)
T ss_dssp ---------------------CCCSEEEEEEECSSSCE--EEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSC
T ss_pred CCCccccccCCCCC----CcccccCCEEEEEECCCCCE--EEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCC
Confidence 33566677776533 34579999999999999998 999997 788999998877643 334568889
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEe
Q 004214 77 VTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITV 156 (768)
Q Consensus 77 V~~l~fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (768)
|++++|+|++. +++++.||+|++||+.+++.....
T Consensus 97 V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~-------------------------------------------- 131 (357)
T 4g56_B 97 VTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVN-------------------------------------------- 131 (357)
T ss_dssp EEEEEEETTTE-EEEEETTSCEEEC--------CCC--------------------------------------------
T ss_pred EEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEE--------------------------------------------
Confidence 99999999985 556788999999998765321100
Q ss_pred eCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeec
Q 004214 157 GERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLV 236 (768)
Q Consensus 157 ~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~ 236 (768)
T Consensus 132 -------------------------------------------------------------------------------- 131 (357)
T 4g56_B 132 -------------------------------------------------------------------------------- 131 (357)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCC
Q 004214 237 GYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES 316 (768)
Q Consensus 237 ~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 316 (768)
.....+|...|.+++ +.+++.. |++|+.||.|++||+.+
T Consensus 132 --------------------------------------~~~~~~h~~~V~~v~--~spdg~~-l~sgs~dg~v~iwd~~~ 170 (357)
T 4g56_B 132 --------------------------------------KFAKYEHDDIVKTLS--VFSDGTQ-AVSGGKDFSVKVWDLSQ 170 (357)
T ss_dssp --------------------------------------CEEECCCSSCEEEEE--ECSSSSE-EEEEETTSCEEEEETTT
T ss_pred --------------------------------------eeccCCCCCCEEEEE--ECCCCCE-EEEEeCCCeEEEEECCC
Confidence 002335777888887 6677765 99999999999999999
Q ss_pred ceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccC-CCEE
Q 004214 317 RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN-DSLV 395 (768)
Q Consensus 317 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l 395 (768)
++++..+.+|...|.+++|+|++..++++++.||.|++||++.+... .......+...+.+++|+|+ +.+|
T Consensus 171 ~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~--------~~~~~~~~~~~v~~v~~sp~~~~~l 242 (357)
T 4g56_B 171 KAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPA--------TRIDFCASDTIPTSVTWHPEKDDTF 242 (357)
T ss_dssp TEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCB--------CBCCCTTCCSCEEEEEECTTSTTEE
T ss_pred CcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCcee--------eeeeeccccccccchhhhhcccceE
Confidence 99999999999999999999998778999999999999999864321 11223446678999999997 5789
Q ss_pred EEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCC-CEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEe
Q 004214 396 CTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVD-QVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLT 474 (768)
Q Consensus 396 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~-~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~ 474 (768)
++|+.|+.|++||+.+++.+..+.+|...|++++|+|++ ++|++|+.|++|+|||+++++++..+ +|...|++++|+|
T Consensus 243 a~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP 321 (357)
T 4g56_B 243 ACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSP 321 (357)
T ss_dssp EEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECS
T ss_pred EEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeC
Confidence 999999999999999999999999999999999999987 68999999999999999999888765 6999999999998
Q ss_pred -CCCEEEEEeCCCcEEEEECCCCe
Q 004214 475 -RGAQIVSCGADGLVKLWTVRTGE 497 (768)
Q Consensus 475 -~~~~l~s~~~dg~i~iwd~~~~~ 497 (768)
++++|++++.||+|++|++.+..
T Consensus 322 ~d~~~l~s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 322 LDHSKFTTVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp SSTTEEEEEETTSCEEEEECC---
T ss_pred CCCCEEEEEcCCCeEEEEECCCCC
Confidence 79999999999999999997643
No 25
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.4e-41 Score=353.67 Aligned_cols=247 Identities=18% Similarity=0.217 Sum_probs=202.5
Q ss_pred CCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEE----eeecccCcEEEEEEecCCCcEEEEEeCCCeEEEE
Q 004214 280 GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVG----VGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVW 355 (768)
Q Consensus 280 ~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iw 355 (768)
+|...|.+++ +.+++ . +++++.||.|++||+.+++... ...+|...|.+++|+|++. +|++++.|+.|++|
T Consensus 92 ~~~~~V~~~~--~s~d~-~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~-~l~sgs~dg~v~iw 166 (357)
T 4g56_B 92 QTEAGVTDVA--WVSEK-G-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGT-QAVSGGKDFSVKVW 166 (357)
T ss_dssp ECSSCEEEEE--EETTT-E-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSS-EEEEEETTSCEEEE
T ss_pred CCCCCEEEEE--EcCCC-C-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCC-EEEEEeCCCeEEEE
Confidence 4556667765 55544 3 5567778888888887766543 2347999999999999976 89999999999999
Q ss_pred eCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCC-EEEEEeCCCcEEEEeCCCCceEEEEe--ccCCCeEEEEEcc
Q 004214 356 SFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDS-LVCTGSQDRTACVWRLPDLVSVVTFR--GHKRGIWSVEFSP 432 (768)
Q Consensus 356 d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~v~~v~~s~ 432 (768)
|+.. ......+..|...|++++|+|++. ++++++.||.|++||+++++....+. .|...+++++|+|
T Consensus 167 d~~~----------~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp 236 (357)
T 4g56_B 167 DLSQ----------KAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHP 236 (357)
T ss_dssp ETTT----------TEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECT
T ss_pred ECCC----------CcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhh
Confidence 9974 345666788999999999999874 78999999999999999988766544 4677899999999
Q ss_pred C-CCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCC-CEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEE
Q 004214 433 V-DQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRG-AQIVSCGADGLVKLWTVRTGECIATYDKHEDKIW 510 (768)
Q Consensus 433 ~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 510 (768)
+ +.+|++|+.|+.|++||+++++++.++.+|...|++++|+|++ ++|++|+.||+|+|||+++++++..+ +|.+.|+
T Consensus 237 ~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~ 315 (357)
T 4g56_B 237 EKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVT 315 (357)
T ss_dssp TSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEE
T ss_pred cccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEE
Confidence 7 5789999999999999999999999999999999999999987 57999999999999999999988776 6999999
Q ss_pred EEEEcC-CCCEEEEEeCCCcEEEEEcCCHHHHH
Q 004214 511 ALAVGK-KTEMFATGGSDALVNLWHDSTAAERE 542 (768)
Q Consensus 511 ~l~~s~-~~~~l~s~~~dg~v~vw~~~~~~~~~ 542 (768)
+++|+| ++.+|++|+.||.|++|++.+.....
T Consensus 316 ~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~~~ 348 (357)
T 4g56_B 316 GVAWSPLDHSKFTTVGWDHKVLHHHLPSEGRTE 348 (357)
T ss_dssp EEEECSSSTTEEEEEETTSCEEEEECC------
T ss_pred EEEEeCCCCCEEEEEcCCCeEEEEECCCCCccc
Confidence 999998 79999999999999999998754433
No 26
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=2.2e-40 Score=339.33 Aligned_cols=294 Identities=23% Similarity=0.370 Sum_probs=263.0
Q ss_pred eeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCC-----ceeeeeeeCCccceEEEeeeeecCCCEEEEE
Q 004214 228 ELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSS-----MSCSYVLAGHSEIVLCLDTCALSSGKILIVT 302 (768)
Q Consensus 228 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~-----~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~ 302 (768)
.+.+...+.+|.+.|.+++|++.++++|++++.|+.|++|++.. +..+..+.+|...|.++. +.+++.. +++
T Consensus 6 ~~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~--~s~dg~~-l~s 82 (319)
T 3frx_A 6 VLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT--LTADGAY-ALS 82 (319)
T ss_dssp EEEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEE--ECTTSSE-EEE
T ss_pred EEEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEE--ECCCCCE-EEE
Confidence 34556778899999999999988889999999999999999864 345667899999999997 6677765 999
Q ss_pred EeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCC
Q 004214 303 GSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKD 382 (768)
Q Consensus 303 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (768)
|+.|++|++||+.+++.+..+.+|...|.+++|+|++. ++++|+.|++|++||++.. ......+|...
T Consensus 83 ~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~D~~i~vwd~~~~-----------~~~~~~~h~~~ 150 (319)
T 3frx_A 83 ASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKAS-MIISGSRDKTIKVWTIKGQ-----------CLATLLGHNDW 150 (319)
T ss_dssp EETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSC-EEEEEETTSCEEEEETTSC-----------EEEEECCCSSC
T ss_pred EeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCC-----------eEEEEeccCCc
Confidence 99999999999999999999999999999999999966 8999999999999998632 45566789999
Q ss_pred eEEEEEccC------CCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCce
Q 004214 383 INSLAVAPN------DSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSC 456 (768)
Q Consensus 383 i~~~~~s~~------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~ 456 (768)
|.+++++|. +..+++++.|+.|++||+.+.+....+.+|..+|++++|+|++++|++|+.||+|++||+.++++
T Consensus 151 v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~ 230 (319)
T 3frx_A 151 VSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKA 230 (319)
T ss_dssp EEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEE
T ss_pred EEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE
Confidence 999999995 44899999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEec--------cCCCcEEEEEEcCCCCEEEEEeCCC
Q 004214 457 LKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD--------KHEDKIWALAVGKKTEMFATGGSDA 528 (768)
Q Consensus 457 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--------~~~~~v~~l~~s~~~~~l~s~~~dg 528 (768)
+..+.. ...|.+++|+|++.+|++++.++ +++|++..+..+..+. .|...+.+++|+|+|++|++|+.||
T Consensus 231 ~~~~~~-~~~v~~~~~sp~~~~la~~~~~~-i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg 308 (319)
T 3frx_A 231 MYTLSA-QDEVFSLAFSPNRYWLAAATATG-IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDN 308 (319)
T ss_dssp EEEEEC-CSCEEEEEECSSSSEEEEEETTE-EEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTS
T ss_pred EEEecC-CCcEEEEEEcCCCCEEEEEcCCC-cEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCc
Confidence 999985 46899999999999999888655 9999999888777664 2456799999999999999999999
Q ss_pred cEEEEEcCCH
Q 004214 529 LVNLWHDSTA 538 (768)
Q Consensus 529 ~v~vw~~~~~ 538 (768)
.|++|++.++
T Consensus 309 ~i~vWd~~t~ 318 (319)
T 3frx_A 309 VIRVWQVMTA 318 (319)
T ss_dssp CEEEEEEEEC
T ss_pred eEEEEEEeec
Confidence 9999998763
No 27
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=6.8e-41 Score=347.23 Aligned_cols=305 Identities=24% Similarity=0.386 Sum_probs=248.9
Q ss_pred CEEEEEEEcCCC-cEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEE---EecCccceeEEEEEcCCCCEEEEEeCC
Q 004214 20 GFCTHYFKGHKG-VVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVA---TLDKHFSRVTSMAITSDGSTLISAGRD 95 (768)
Q Consensus 20 ~~~~~~l~gh~~-~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~---~l~~h~~~V~~l~fs~d~~~L~s~~~d 95 (768)
..++..+.+|.+ .|.+++|+|+|++ ||+|+.|++|+|||+.++.... ...+|...|.+++|+|+|++|++++.|
T Consensus 5 ~~~~~~~~~h~~~~v~~l~~sp~g~~--las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D 82 (345)
T 3fm0_A 5 LVLLGRVPAHPDSRCWFLAWNPAGTL--LASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFD 82 (345)
T ss_dssp EEEEEEECCSTTSCEEEEEECTTSSC--EEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEEeeeecCCCCCcEEEEEECCCCCE--EEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECC
Confidence 456788999988 9999999999988 9999999999999998886432 236899999999999999999999999
Q ss_pred CeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeee
Q 004214 96 KVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQ 175 (768)
Q Consensus 96 g~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~ 175 (768)
+.|++||+.++.
T Consensus 83 ~~v~iw~~~~~~-------------------------------------------------------------------- 94 (345)
T 3fm0_A 83 ATTCIWKKNQDD-------------------------------------------------------------------- 94 (345)
T ss_dssp SCEEEEEECCC---------------------------------------------------------------------
T ss_pred CcEEEEEccCCC--------------------------------------------------------------------
Confidence 999999865321
Q ss_pred cCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEE
Q 004214 176 KSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYL 255 (768)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 255 (768)
T Consensus 95 -------------------------------------------------------------------------------- 94 (345)
T 3fm0_A 95 -------------------------------------------------------------------------------- 94 (345)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCc---eEEEeeecccCcEEE
Q 004214 256 AVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR---CCVGVGTGHMGAVGA 332 (768)
Q Consensus 256 ~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~ 332 (768)
..+...+.+|...|.+++ +.+++.. |++|+.|+.|++||+.++ .++..+.+|...|.+
T Consensus 95 ----------------~~~~~~~~~h~~~v~~v~--~sp~~~~-l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~ 155 (345)
T 3fm0_A 95 ----------------FECVTTLEGHENEVKSVA--WAPSGNL-LATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKH 155 (345)
T ss_dssp ----------------EEEEEEECCCSSCEEEEE--ECTTSSE-EEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEE
T ss_pred ----------------eEEEEEccCCCCCceEEE--EeCCCCE-EEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEE
Confidence 001124556778888887 6666665 999999999999999765 456678899999999
Q ss_pred EEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 004214 333 VAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDL 412 (768)
Q Consensus 333 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~ 412 (768)
++|+|++. +|++++.|++|++|++... .......+.+|...|.+++|+|++++|++|+.|++|++|+....
T Consensus 156 ~~~~p~~~-~l~s~s~d~~i~~w~~~~~--------~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~ 226 (345)
T 3fm0_A 156 VVWHPSQE-LLASASYDDTVKLYREEED--------DWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLP 226 (345)
T ss_dssp EEECSSSS-CEEEEETTSCEEEEEEETT--------EEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECT
T ss_pred EEECCCCC-EEEEEeCCCcEEEEEecCC--------CEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccC
Confidence 99999976 7999999999999998643 22244567789999999999999999999999999999996321
Q ss_pred ---------------ceEEEEec-cCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCc----e-----eEEeecCCCcE
Q 004214 413 ---------------VSVVTFRG-HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGS----C-----LKTFEGHTSSV 467 (768)
Q Consensus 413 ---------------~~~~~~~~-~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~----~-----~~~~~~~~~~v 467 (768)
+.+..+.+ |...|.+++|+|++..|++++.|+.|++|+...+. + .....+|...|
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V 306 (345)
T 3fm0_A 227 GNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDV 306 (345)
T ss_dssp TCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCE
T ss_pred CCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcE
Confidence 23445555 88899999999999999999999999999987543 1 12345899999
Q ss_pred EEEEEEeCC-CEEEEEeCCCcEEEEECCCCeEEEEe
Q 004214 468 LRASFLTRG-AQIVSCGADGLVKLWTVRTGECIATY 502 (768)
Q Consensus 468 ~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~ 502 (768)
++++|+|++ .+|++|+.||.|++|++.+++.....
T Consensus 307 ~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~~~ 342 (345)
T 3fm0_A 307 NCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLHHH 342 (345)
T ss_dssp EEEEECSSSTTEEEEEETTSCEEEEEECC-------
T ss_pred eEeEEeCCCceEEEEcCCCCcEEEEEecCCCCcccc
Confidence 999999998 49999999999999999988766544
No 28
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=4.1e-41 Score=346.83 Aligned_cols=208 Identities=23% Similarity=0.275 Sum_probs=177.0
Q ss_pred eeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeC
Q 004214 278 LAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSF 357 (768)
Q Consensus 278 ~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~ 357 (768)
+.+|...|.+++ +.+++.. |++|+.||+|++||+.+++++..+.+|...|.+++|+|++..++++++.|++|++||+
T Consensus 123 ~~~H~~~V~~v~--~spdg~~-l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~ 199 (344)
T 4gqb_B 123 KYEHDDIVSTVS--VLSSGTQ-AVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDT 199 (344)
T ss_dssp EECCSSCEEEEE--ECTTSSE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEET
T ss_pred ccCCCCCEEEEE--ECCCCCE-EEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccc
Confidence 446788888887 6677765 9999999999999999999999999999999999999998889999999999999999
Q ss_pred CCCCCCCccccccceeeEeeccCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCC-C
Q 004214 358 DGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVD-Q 435 (768)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~-~ 435 (768)
+..... .......+...+.+++|+| ++++|++|+.||+|++||+++++++..+.+|...|++++|+|++ +
T Consensus 200 ~~~~~~--------~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~ 271 (344)
T 4gqb_B 200 RCPKPA--------SQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVP 271 (344)
T ss_dssp TSSSCE--------EECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSC
T ss_pred ccccee--------eeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCe
Confidence 854211 1112234566799999999 56788999999999999999999999999999999999999998 5
Q ss_pred EEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCC-EEEEEeCCCcEEEEECCCCe
Q 004214 436 VVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGA-QIVSCGADGLVKLWTVRTGE 497 (768)
Q Consensus 436 ~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~~ 497 (768)
+|++|+.|++|+|||+.+++++ .+.+|...|++++|+|++. +|++++.||+|++|++.+..
T Consensus 272 ~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 272 FLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp CEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred EEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence 8999999999999999988765 5688999999999999986 56799999999999997653
No 29
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=5.1e-40 Score=336.60 Aligned_cols=293 Identities=23% Similarity=0.448 Sum_probs=249.2
Q ss_pred EEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCC-----CeeEEEecCccceeEEEEEcCCCCEEEEEeCC
Q 004214 21 FCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLA-----KKCVATLDKHFSRVTSMAITSDGSTLISAGRD 95 (768)
Q Consensus 21 ~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~-----~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~d 95 (768)
.+..+|.||.+.|++++|+|++. .+|++|+.|++|++||+.+ +.++..+.+|...|.+++|+|++++|++++.|
T Consensus 8 ~l~~~l~gH~~~V~~l~~~~~~~-~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D 86 (319)
T 3frx_A 8 VLRGTLEGHNGWVTSLATSAGQP-NLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWD 86 (319)
T ss_dssp EEEEEECCCSSCEEEEEECSSCT-TEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEEEEEccccceEEEEEccCCCc-cEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCC
Confidence 34568999999999999999752 2499999999999999854 45678899999999999999999999999999
Q ss_pred CeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeee
Q 004214 96 KVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQ 175 (768)
Q Consensus 96 g~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~ 175 (768)
++|++||+.+++++
T Consensus 87 ~~v~~wd~~~~~~~------------------------------------------------------------------ 100 (319)
T 3frx_A 87 KTLRLWDVATGETY------------------------------------------------------------------ 100 (319)
T ss_dssp SEEEEEETTTTEEE------------------------------------------------------------------
T ss_pred CEEEEEECCCCCee------------------------------------------------------------------
Confidence 99999998765422
Q ss_pred cCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEE
Q 004214 176 KSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYL 255 (768)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 255 (768)
T Consensus 101 -------------------------------------------------------------------------------- 100 (319)
T 3frx_A 101 -------------------------------------------------------------------------------- 100 (319)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEE
Q 004214 256 AVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAF 335 (768)
Q Consensus 256 ~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 335 (768)
..+.+|...|.+++ +.+++.. +++|+.||.|++||+.. .++..+.+|...|.++.+
T Consensus 101 --------------------~~~~~h~~~v~~~~--~~~~~~~-l~s~s~D~~i~vwd~~~-~~~~~~~~h~~~v~~~~~ 156 (319)
T 3frx_A 101 --------------------QRFVGHKSDVMSVD--IDKKASM-IISGSRDKTIKVWTIKG-QCLATLLGHNDWVSQVRV 156 (319)
T ss_dssp --------------------EEEECCSSCEEEEE--ECTTSCE-EEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEE
T ss_pred --------------------EEEccCCCcEEEEE--EcCCCCE-EEEEeCCCeEEEEECCC-CeEEEEeccCCcEEEEEE
Confidence 13345667777776 5565554 99999999999999974 567778899999999999
Q ss_pred ecCC-----CcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 004214 336 SKKL-----QNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLP 410 (768)
Q Consensus 336 ~~~~-----~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~ 410 (768)
.|.. ..++++++.|+.|++||+.. ......+.+|...|.+++|+|++++|++|+.||.|++||+.
T Consensus 157 ~~~~~~~~~~~~l~s~~~d~~i~~wd~~~----------~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~ 226 (319)
T 3frx_A 157 VPNEKADDDSVTIISAGNDKMVKAWNLNQ----------FQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLA 226 (319)
T ss_dssp CCC------CCEEEEEETTSCEEEEETTT----------TEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETT
T ss_pred ccCCCCCCCccEEEEEeCCCEEEEEECCc----------chhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence 9853 23799999999999999974 23455667899999999999999999999999999999999
Q ss_pred CCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEee--------cCCCcEEEEEEEeCCCEEEEE
Q 004214 411 DLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFE--------GHTSSVLRASFLTRGAQIVSC 482 (768)
Q Consensus 411 ~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~--------~~~~~v~~~~~s~~~~~l~s~ 482 (768)
+++.+..+.. ..+|.+++|+|++.+|++++.+ .+++|++..+..+..+. .|...+.+++|+|+|++|++|
T Consensus 227 ~~~~~~~~~~-~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg 304 (319)
T 3frx_A 227 AKKAMYTLSA-QDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAG 304 (319)
T ss_dssp TTEEEEEEEC-CSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEE
T ss_pred CCcEEEEecC-CCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEe
Confidence 9999988875 4689999999999999988764 59999998887777664 346679999999999999999
Q ss_pred eCCCcEEEEECCCC
Q 004214 483 GADGLVKLWTVRTG 496 (768)
Q Consensus 483 ~~dg~i~iwd~~~~ 496 (768)
+.||.|++||+.++
T Consensus 305 ~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 305 YTDNVIRVWQVMTA 318 (319)
T ss_dssp ETTSCEEEEEEEEC
T ss_pred ecCceEEEEEEeec
Confidence 99999999998764
No 30
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=5.1e-40 Score=341.57 Aligned_cols=289 Identities=19% Similarity=0.312 Sum_probs=262.3
Q ss_pred EEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEE
Q 004214 231 LSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVR 310 (768)
Q Consensus 231 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~ 310 (768)
....+.+|...|.+++|++ ++.+|++|+.|+.|++||..++.....+..|...|.+++ +.|++.. +++|+.|+.++
T Consensus 56 ~~~~l~gH~~~V~~~~~s~-d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~--~sp~g~~-lasg~~d~~i~ 131 (354)
T 2pbi_B 56 TRRTLKGHGNKVLCMDWCK-DKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACA--YAPSGCA-IACGGLDNKCS 131 (354)
T ss_dssp EEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEE--ECTTSSE-EEEESTTSEEE
T ss_pred EEEEecCCCCeEEEEEECC-CCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEE--ECCCCCE-EEEeeCCCCEE
Confidence 4467789999999999985 678999999999999999999999989999999999987 7777775 99999999999
Q ss_pred EEeCCCc------eEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeE
Q 004214 311 LWDSESR------CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDIN 384 (768)
Q Consensus 311 iwd~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 384 (768)
+|++... .....+.+|...|.+++|+|++. .+++++.|++|++||+..+ .....+.+|...|.
T Consensus 132 v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~t~s~D~~v~lwd~~~~----------~~~~~~~~h~~~v~ 200 (354)
T 2pbi_B 132 VYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDM-QILTASGDGTCALWDVESG----------QLLQSFHGHGADVL 200 (354)
T ss_dssp EEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTC----------CEEEEEECCSSCEE
T ss_pred EEEEeccccccccccceeeeccCCcEEEEEEeCCCC-EEEEEeCCCcEEEEeCCCC----------eEEEEEcCCCCCeE
Confidence 9998643 23455678999999999999966 7999999999999999743 35667788999999
Q ss_pred EEEEcc--CCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeec
Q 004214 385 SLAVAP--NDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEG 462 (768)
Q Consensus 385 ~~~~s~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~ 462 (768)
+++++| ++++|++|+.||.|++||+++++.+..+.+|...|++++|+|++.+|++|+.|++|++||++.+..+..+..
T Consensus 201 ~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~ 280 (354)
T 2pbi_B 201 CLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSK 280 (354)
T ss_dssp EEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred EEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcC
Confidence 999988 578999999999999999999999999999999999999999999999999999999999999988877764
Q ss_pred C--CCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004214 463 H--TSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 534 (768)
Q Consensus 463 ~--~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~ 534 (768)
+ ...+.+++|+|+|++|++|+.||.|++||+.+++++..+.+|.+.|++++|+|+|++|++|+.||.|++|+
T Consensus 281 ~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 281 ESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp TTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 4 35789999999999999999999999999999999999999999999999999999999999999999995
No 31
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.4e-40 Score=342.90 Aligned_cols=243 Identities=19% Similarity=0.209 Sum_probs=208.2
Q ss_pred CccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEE----eeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEe
Q 004214 281 HSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVG----VGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS 356 (768)
Q Consensus 281 ~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd 356 (768)
+...|.+++ +.++ +. +++|+.||.|++||+.+++.+. ...+|.+.|++++|+|+++ +|++|+.|++|++||
T Consensus 81 ~~~~v~~~~--~s~d-~~-l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~-~l~sgs~d~~i~iwd 155 (344)
T 4gqb_B 81 TEAGVADLT--WVGE-RG-ILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGT-QAVSGSKDICIKVWD 155 (344)
T ss_dssp ESSCEEEEE--EETT-TE-EEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEE
T ss_pred cCCCEEEEE--EeCC-Ce-EEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCC-EEEEEeCCCeEEEEE
Confidence 345677775 5554 44 8899999999999999876543 3458999999999999976 899999999999999
Q ss_pred CCCCCCCCccccccceeeEeeccCCCeEEEEEccCC-CEEEEEeCCCcEEEEeCCCCceEEEEe--ccCCCeEEEEEccC
Q 004214 357 FDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND-SLVCTGSQDRTACVWRLPDLVSVVTFR--GHKRGIWSVEFSPV 433 (768)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~v~~v~~s~~ 433 (768)
+.. ......+.+|...|++++|+|++ .+|++++.|++|++||+++++....+. .|...+.+++|+|+
T Consensus 156 ~~~----------~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~ 225 (344)
T 4gqb_B 156 LAQ----------QVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQ 225 (344)
T ss_dssp TTT----------TEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSS
T ss_pred CCC----------CcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCC
Confidence 974 34667778899999999999987 478999999999999999999888764 35567999999995
Q ss_pred -CCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCC-CEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEE
Q 004214 434 -DQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRG-AQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWA 511 (768)
Q Consensus 434 -~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 511 (768)
+++|++|+.||+|++||+++++++.++.+|...|++++|+|++ ++|++|+.||+|+|||+.+++++ .+.+|.+.|++
T Consensus 226 ~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~ 304 (344)
T 4gqb_B 226 QSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRD 304 (344)
T ss_dssp CTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEE
T ss_pred CCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEE
Confidence 5789999999999999999999999999999999999999998 57999999999999999999876 46789999999
Q ss_pred EEEcCCCC-EEEEEeCCCcEEEEEcCCHH
Q 004214 512 LAVGKKTE-MFATGGSDALVNLWHDSTAA 539 (768)
Q Consensus 512 l~~s~~~~-~l~s~~~dg~v~vw~~~~~~ 539 (768)
++|+|+++ +|++||.||.|++|++.++.
T Consensus 305 v~~sp~~~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 305 ATWSPLNHSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp EEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred EEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence 99999986 57799999999999998754
No 32
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=9.9e-40 Score=338.29 Aligned_cols=326 Identities=17% Similarity=0.235 Sum_probs=276.5
Q ss_pred CCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEEECCCCee
Q 004214 29 HKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSC 108 (768)
Q Consensus 29 h~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~~~~~ 108 (768)
|.+.|.+++|+|||+. ++++..++.+.+|+...........+|...|++++|+|++++|++++ ||.|++||+.++..
T Consensus 8 ~~~~v~~~~~s~dg~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~ 84 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQM--QPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGN 84 (337)
T ss_dssp EEEECCEEEECSSSCE--EECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTC
T ss_pred cCCceeEEEECCCCCE--EEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCc
Confidence 5678999999999987 88888777777887666555555557999999999999999999999 99999999876431
Q ss_pred eeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccC
Q 004214 109 KLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDD 188 (768)
Q Consensus 109 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 188 (768)
...+.
T Consensus 85 ~~~~~--------------------------------------------------------------------------- 89 (337)
T 1gxr_A 85 KSPVS--------------------------------------------------------------------------- 89 (337)
T ss_dssp CSCSE---------------------------------------------------------------------------
T ss_pred eeeee---------------------------------------------------------------------------
Confidence 10000
Q ss_pred cccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEE
Q 004214 189 SKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYD 268 (768)
Q Consensus 189 ~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d 268 (768)
T Consensus 90 -------------------------------------------------------------------------------- 89 (337)
T 1gxr_A 90 -------------------------------------------------------------------------------- 89 (337)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCce--EEEeeecccCcEEEEEEecCCCcEEEEE
Q 004214 269 LSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC--CVGVGTGHMGAVGAVAFSKKLQNFLVSG 346 (768)
Q Consensus 269 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~s~ 346 (768)
.....+|...+.++. +.+++.. +++++.||.|++||+.+++ ....+..|...|.+++|+|++. +++++
T Consensus 90 ------~~~~~~~~~~v~~~~--~~~~~~~-l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~ 159 (337)
T 1gxr_A 90 ------QLDCLNRDNYIRSCK--LLPDGCT-LIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSK-VCFSC 159 (337)
T ss_dssp ------EEECSCTTSBEEEEE--ECTTSSE-EEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSS-EEEEE
T ss_pred ------cccccCCCCcEEEEE--EcCCCCE-EEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCC-EEEEE
Confidence 001113556667765 5566654 8888999999999998876 5667788999999999999865 89999
Q ss_pred eCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeE
Q 004214 347 SSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIW 426 (768)
Q Consensus 347 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~ 426 (768)
+.||.|++||+... ........|...|.+++|+|+++++++++.||.|++||+++++.+..+. +..++.
T Consensus 160 ~~dg~v~~~d~~~~----------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~ 228 (337)
T 1gxr_A 160 CSDGNIAVWDLHNQ----------TLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIF 228 (337)
T ss_dssp ETTSCEEEEETTTT----------EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEE
T ss_pred eCCCcEEEEeCCCC----------ceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec-CCCceE
Confidence 99999999999743 3455667799999999999999999999999999999999998888775 788999
Q ss_pred EEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCC
Q 004214 427 SVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHE 506 (768)
Q Consensus 427 ~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 506 (768)
+++|+|+++++++++.|+.|++||+.+++. ..+..|...|.+++|+|++++|++++.||.|++||+.+++.+.... |.
T Consensus 229 ~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~-~~ 306 (337)
T 1gxr_A 229 SLGYCPTGEWLAVGMESSNVEVLHVNKPDK-YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ES 306 (337)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTSSCE-EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CS
T ss_pred EEEECCCCCEEEEEcCCCcEEEEECCCCCe-EEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEec-CC
Confidence 999999999999999999999999988775 4667899999999999999999999999999999999999886654 88
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 004214 507 DKIWALAVGKKTEMFATGGSDALVNLWHD 535 (768)
Q Consensus 507 ~~v~~l~~s~~~~~l~s~~~dg~v~vw~~ 535 (768)
..|.+++|+|++++|++++.||.|++|++
T Consensus 307 ~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 307 SSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp SCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred CcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 99999999999999999999999999986
No 33
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=7.5e-41 Score=351.92 Aligned_cols=300 Identities=22% Similarity=0.353 Sum_probs=263.1
Q ss_pred EEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeE
Q 004214 230 ILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSV 309 (768)
Q Consensus 230 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i 309 (768)
.....+.+|.+.|.+++|+| ++++|++|+.|+.|++||..+++....+..|...|.+++ +.+++.. +++|+.|+.+
T Consensus 57 ~~~~~l~gH~~~V~~~~~sp-~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~--~s~~g~~-las~~~d~~v 132 (380)
T 3iz6_a 57 VCCRTLQGHSGKVYSLDWTP-EKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECA--FAPNGQS-VACGGLDSAC 132 (380)
T ss_dssp EEEEEECCCSSCEEEEEECT-TSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCE--ECTTSSE-EEECCSSSCC
T ss_pred EEeecccccccEEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEE--ECCCCCE-EEEeeCCCcE
Confidence 35567889999999999986 778999999999999999999999999999999999987 7777765 9999999999
Q ss_pred EEEeCCCce-------EEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCC
Q 004214 310 RLWDSESRC-------CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKD 382 (768)
Q Consensus 310 ~iwd~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (768)
++||+.+.. ....+.+|.+.|.++.|.|++...+++|+.|++|++||+..+..... .......+|...
T Consensus 133 ~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~-----~~~~~~~~h~~~ 207 (380)
T 3iz6_a 133 SIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISI-----FGSEFPSGHTAD 207 (380)
T ss_dssp EEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEE-----ECCCSSSSCCSC
T ss_pred EEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEE-----eecccCCCCccC
Confidence 999987532 34567799999999999998777899999999999999985431100 000112568899
Q ss_pred eEEEEEcc-CCCEEEEEeCCCcEEEEeCC-CCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEe
Q 004214 383 INSLAVAP-NDSLVCTGSQDRTACVWRLP-DLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTF 460 (768)
Q Consensus 383 i~~~~~s~-~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~ 460 (768)
|.+++++| ++.+|++|+.||+|++||++ ....+..+.+|...|++++|+|++++|++|+.||+|++||++++.++..+
T Consensus 208 v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~ 287 (380)
T 3iz6_a 208 VLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVY 287 (380)
T ss_dssp EEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEE
T ss_pred eEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEe
Confidence 99999987 88999999999999999998 55788889999999999999999999999999999999999999999888
Q ss_pred ecCC-------CcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEe----ccCCCcEEEEEEcCCCCEEEEEeCCCc
Q 004214 461 EGHT-------SSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATY----DKHEDKIWALAVGKKTEMFATGGSDAL 529 (768)
Q Consensus 461 ~~~~-------~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~----~~~~~~v~~l~~s~~~~~l~s~~~dg~ 529 (768)
..+. ..|++++|+|+|++|++|+.||.|++||+.+++.+..+ .+|.+.|++++|+|+|.+|++|+.||.
T Consensus 288 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~ 367 (380)
T 3iz6_a 288 NREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKN 367 (380)
T ss_dssp CCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSC
T ss_pred cccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCC
Confidence 7543 24899999999999999999999999999999988887 679999999999999999999999999
Q ss_pred EEEEEcCCH
Q 004214 530 VNLWHDSTA 538 (768)
Q Consensus 530 v~vw~~~~~ 538 (768)
|++|++...
T Consensus 368 i~iW~~~~~ 376 (380)
T 3iz6_a 368 LKIWAFSGH 376 (380)
T ss_dssp EEEEECCSS
T ss_pred EEEEecCCC
Confidence 999998754
No 34
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.2e-39 Score=337.93 Aligned_cols=301 Identities=20% Similarity=0.364 Sum_probs=253.6
Q ss_pred EEEeeecccCC-ceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeee---eeeCCccceEEEeeeeecCCCEEEEEEeC
Q 004214 230 ILSKRLVGYNE-EILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSY---VLAGHSEIVLCLDTCALSSGKILIVTGSK 305 (768)
Q Consensus 230 ~~~~~~~~~~~-~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~---~~~~~~~~v~~l~~~~~~~~~~~l~~~~~ 305 (768)
.....+.+|.. .+..++|+| ++.+|++|+.|+.|++||+.++.... ...+|...|.+++ +.+++.. |++|+.
T Consensus 6 ~~~~~~~~h~~~~v~~l~~sp-~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~--~sp~g~~-l~s~s~ 81 (345)
T 3fm0_A 6 VLLGRVPAHPDSRCWFLAWNP-AGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVA--WSPCGNY-LASASF 81 (345)
T ss_dssp EEEEEECCSTTSCEEEEEECT-TSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEE--ECTTSSE-EEEEET
T ss_pred EEeeeecCCCCCcEEEEEECC-CCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEE--ECCCCCE-EEEEEC
Confidence 44566778877 899999985 78899999999999999998876432 2368999999998 7777765 999999
Q ss_pred CCeEEEEeCCCc--eEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCe
Q 004214 306 DNSVRLWDSESR--CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDI 383 (768)
Q Consensus 306 dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i 383 (768)
|+.+++|+...+ .++..+.+|...|.+++|+|++. +|++++.|++|++||+.... ..........|...|
T Consensus 82 D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~-~l~s~s~D~~v~iwd~~~~~-------~~~~~~~~~~h~~~v 153 (345)
T 3fm0_A 82 DATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGN-LLATCSRDKSVWVWEVDEED-------EYECVSVLNSHTQDV 153 (345)
T ss_dssp TSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEEECTTS-------CEEEEEEECCCCSCE
T ss_pred CCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCC-EEEEEECCCeEEEEECCCCC-------CeEEEEEecCcCCCe
Confidence 999999998776 46778899999999999999966 89999999999999997542 223455667899999
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEeCCCCc--eEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCC-------
Q 004214 384 NSLAVAPNDSLVCTGSQDRTACVWRLPDLV--SVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG------- 454 (768)
Q Consensus 384 ~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~------- 454 (768)
.+++|+|++++|++|+.|++|++||..++. ....+.+|...|++++|+|++++|++++.|++|++||....
T Consensus 154 ~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~ 233 (345)
T 3fm0_A 154 KHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVA 233 (345)
T ss_dssp EEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCC
T ss_pred EEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccce
Confidence 999999999999999999999999998775 45678899999999999999999999999999999996321
Q ss_pred --------ceeEEeec-CCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCe---------EEEEeccCCCcEEEEEEcC
Q 004214 455 --------SCLKTFEG-HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE---------CIATYDKHEDKIWALAVGK 516 (768)
Q Consensus 455 --------~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~---------~~~~~~~~~~~v~~l~~s~ 516 (768)
.++.++.+ |...|.+++|+|++..|++++.|+.|++|+...+. ......+|...|++++|+|
T Consensus 234 ~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p 313 (345)
T 3fm0_A 234 CSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNP 313 (345)
T ss_dssp CC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECS
T ss_pred eeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeC
Confidence 34455555 88999999999999999999999999999987542 1223467999999999999
Q ss_pred CC-CEEEEEeCCCcEEEEEcCCHHHHH
Q 004214 517 KT-EMFATGGSDALVNLWHDSTAAERE 542 (768)
Q Consensus 517 ~~-~~l~s~~~dg~v~vw~~~~~~~~~ 542 (768)
++ .+||+|+.||.|++|+..+++...
T Consensus 314 ~~~~~laS~s~Dg~v~~W~~~~~~~~~ 340 (345)
T 3fm0_A 314 KEPGLLASCSDDGEVAFWKYQRPEGLH 340 (345)
T ss_dssp SSTTEEEEEETTSCEEEEEECC-----
T ss_pred CCceEEEEcCCCCcEEEEEecCCCCcc
Confidence 98 599999999999999999876543
No 35
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=3e-39 Score=330.52 Aligned_cols=295 Identities=26% Similarity=0.459 Sum_probs=255.6
Q ss_pred CCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeE
Q 004214 19 GGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVV 98 (768)
Q Consensus 19 ~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i 98 (768)
.......+.||.+.|++++|+|++++ |++|+.||.|++||+.+++....+.+|...|.+++|+|++++|++++.|+.|
T Consensus 12 ~~~~~~~~~gh~~~v~~~~~s~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i 89 (312)
T 4ery_A 12 NYALKFTLAGHTKAVSSVKFSPNGEW--LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTL 89 (312)
T ss_dssp CCEEEEEECCCSSCEEEEEECTTSSE--EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred CceeEEEEcccCCcEEEEEECCCCCE--EEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEE
Confidence 34567789999999999999999887 9999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCC
Q 004214 99 NLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSS 178 (768)
Q Consensus 99 ~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~ 178 (768)
++||+.+++++.
T Consensus 90 ~vwd~~~~~~~~-------------------------------------------------------------------- 101 (312)
T 4ery_A 90 KIWDVSSGKCLK-------------------------------------------------------------------- 101 (312)
T ss_dssp EEEETTTCCEEE--------------------------------------------------------------------
T ss_pred EEEECCCCcEEE--------------------------------------------------------------------
Confidence 999987643221
Q ss_pred ceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEE
Q 004214 179 DVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVA 258 (768)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 258 (768)
T Consensus 102 -------------------------------------------------------------------------------- 101 (312)
T 4ery_A 102 -------------------------------------------------------------------------------- 101 (312)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecC
Q 004214 259 TNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKK 338 (768)
Q Consensus 259 ~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~ 338 (768)
.+.+|...|.++. +.+++.. +++|+.||.|++||+.+++.+..+..|..+|.+++|+|+
T Consensus 102 ------------------~~~~~~~~v~~~~--~~~~~~~-l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~ 160 (312)
T 4ery_A 102 ------------------TLKGHSNYVFCCN--FNPQSNL-IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 160 (312)
T ss_dssp ------------------EEECCSSCEEEEE--ECSSSSE-EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTT
T ss_pred ------------------EEcCCCCCEEEEE--EcCCCCE-EEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCC
Confidence 2334555666665 5566655 999999999999999999999999999999999999999
Q ss_pred CCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEE
Q 004214 339 LQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTF 418 (768)
Q Consensus 339 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 418 (768)
+. ++++++.||.|++||+.... ........+...+.+++|+|++++|++++.||.|++||+.+++.+..+
T Consensus 161 ~~-~l~~~~~d~~i~~wd~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 230 (312)
T 4ery_A 161 GS-LIVSSSYDGLCRIWDTASGQ---------CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 230 (312)
T ss_dssp SS-EEEEEETTSCEEEEETTTCC---------EEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEE
T ss_pred CC-EEEEEeCCCcEEEEECCCCc---------eeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEE
Confidence 66 89999999999999997532 112223456678999999999999999999999999999999999999
Q ss_pred eccCCCeEE---EEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEe--CCCcEEEEEC
Q 004214 419 RGHKRGIWS---VEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCG--ADGLVKLWTV 493 (768)
Q Consensus 419 ~~~~~~v~~---v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~--~dg~i~iwd~ 493 (768)
.+|...+.+ ....+++.+|++|+.||.|++||+.+++++..+.+|...|.+++|+|++++|++++ .||.|++|+.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~ 310 (312)
T 4ery_A 231 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 310 (312)
T ss_dssp CSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEEC
T ss_pred EecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecC
Confidence 988765433 23346789999999999999999999999999999999999999999999999987 6999999986
Q ss_pred C
Q 004214 494 R 494 (768)
Q Consensus 494 ~ 494 (768)
+
T Consensus 311 d 311 (312)
T 4ery_A 311 D 311 (312)
T ss_dssp C
T ss_pred C
Confidence 4
No 36
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.7e-42 Score=365.13 Aligned_cols=334 Identities=16% Similarity=0.234 Sum_probs=282.2
Q ss_pred CcEEEEEEeeCCCccEEEEE----------eCCCcEEEEECCCCe---eEEEecCccceeEEEEEcCCCCEEEEEeCCCe
Q 004214 31 GVVSSILFHPDTDKSLLFSG----------SDDATVRVWDLLAKK---CVATLDKHFSRVTSMAITSDGSTLISAGRDKV 97 (768)
Q Consensus 31 ~~V~~l~~spd~~~~~l~sg----------~~dg~I~iWd~~~~~---~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~ 97 (768)
..|.+++|+|+++ .++++| +.|+.|+|||+.++. .+..+ .|...|++++|+|++++|++++.||.
T Consensus 13 ~~v~~~~~sp~g~-~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~ 90 (416)
T 2pm9_A 13 SRTATFAWSHDKI-PLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNGS 90 (416)
T ss_dssp EESCBCCBCSSSS-CEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSSC
T ss_pred hhcceEeeCCCCC-CEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCCe
Confidence 4688999999987 248999 899999999998876 44444 58899999999999999999999999
Q ss_pred EEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecC
Q 004214 98 VNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKS 177 (768)
Q Consensus 98 i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~ 177 (768)
|++||+.+....
T Consensus 91 v~vw~~~~~~~~-------------------------------------------------------------------- 102 (416)
T 2pm9_A 91 LELYSTNEANNA-------------------------------------------------------------------- 102 (416)
T ss_dssp EEEECCSSTTSC--------------------------------------------------------------------
T ss_pred EEEeeccccccc--------------------------------------------------------------------
Confidence 999998752100
Q ss_pred CceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEE
Q 004214 178 SDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAV 257 (768)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~ 257 (768)
......+.+|...|.+++|++.++.++++
T Consensus 103 ---------------------------------------------------~~~~~~~~~h~~~v~~~~~~~~~~~~l~s 131 (416)
T 2pm9_A 103 ---------------------------------------------------INSMARFSNHSSSVKTVKFNAKQDNVLAS 131 (416)
T ss_dssp ---------------------------------------------------CCEEEECCCSSSCCCEEEECSSSTTBEEE
T ss_pred ---------------------------------------------------ccchhhccCCccceEEEEEcCCCCCEEEE
Confidence 00112344577789999998776899999
Q ss_pred EeCCCcEEEEECCCce------eeee---eeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecc--
Q 004214 258 ATNIEQVQVYDLSSMS------CSYV---LAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGH-- 326 (768)
Q Consensus 258 ~~~~~~i~i~d~~~~~------~~~~---~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-- 326 (768)
++.++.|++||+.++. .... +..|...|.++. +.+++..++++++.||.|++||+.+++.+..+..|
T Consensus 132 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~ 209 (416)
T 2pm9_A 132 GGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLA--WNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSP 209 (416)
T ss_dssp ECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEE--ECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCC
T ss_pred EcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEE--eCCCCCcEEEEEcCCCCEEEEECCCCCcceEEecccc
Confidence 9999999999999886 3333 467999999998 77775556999999999999999999999888876
Q ss_pred ----cCcEEEEEEecCCCcEEEEEeCCC---eEEEEeCCCCCCCCccccccceeeEee-ccCCCeEEEEEcc-CCCEEEE
Q 004214 327 ----MGAVGAVAFSKKLQNFLVSGSSDH---TIKVWSFDGLSDDAEQPMNLKAKAVVA-AHGKDINSLAVAP-NDSLVCT 397 (768)
Q Consensus 327 ----~~~v~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~s~-~~~~l~~ 397 (768)
...|.+++|+|++..++++++.|+ .|++||++... ....... .|...|.+++|+| ++++|++
T Consensus 210 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~---------~~~~~~~~~~~~~v~~~~~s~~~~~~l~s 280 (416)
T 2pm9_A 210 NSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNAN---------TPLQTLNQGHQKGILSLDWCHQDEHLLLS 280 (416)
T ss_dssp SSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTT---------SCSBCCCSCCSSCEEEEEECSSCSSCEEE
T ss_pred ccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCC---------CCcEEeecCccCceeEEEeCCCCCCeEEE
Confidence 789999999999877999999999 99999998542 1233344 7889999999999 9999999
Q ss_pred EeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCC-CEEEEeeCCCcEEEEeCCCCceeEEeec--------------
Q 004214 398 GSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVD-QVVITASGDKTIKIWSISDGSCLKTFEG-------------- 462 (768)
Q Consensus 398 ~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~-~~l~t~~~d~~i~iwd~~~~~~~~~~~~-------------- 462 (768)
++.||.|++||+.+++.+..+.+|...|++++|+|++ .+|++++.|+.|++||+.++........
T Consensus 281 ~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (416)
T 2pm9_A 281 SGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWN 360 (416)
T ss_dssp EESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------
T ss_pred EeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccc
Confidence 9999999999999999999999999999999999999 8999999999999999987764332211
Q ss_pred ---------------------CCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCC
Q 004214 463 ---------------------HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTG 496 (768)
Q Consensus 463 ---------------------~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 496 (768)
|..++.+++|+|+|++|++++.||.|+||++.+.
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 361 NVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp ------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred cccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 6678889999999999999999999999998764
No 37
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-39 Score=332.79 Aligned_cols=302 Identities=22% Similarity=0.343 Sum_probs=240.2
Q ss_pred CCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCC--eeEEEe-cC-ccceeEEEEEcCCCCEEEEEe
Q 004214 18 DGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK--KCVATL-DK-HFSRVTSMAITSDGSTLISAG 93 (768)
Q Consensus 18 ~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~--~~~~~l-~~-h~~~V~~l~fs~d~~~L~s~~ 93 (768)
.+.++++.+.+|.+.|.+++|+|+ +||+|+.|++|++||+.++ ..+..+ .+ |...|.+++|+|++++|++++
T Consensus 2 ~~~~~~~~~~~h~~~v~~~~~s~~----~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s 77 (330)
T 2hes_X 2 ASINLIKSLKLYKEKIWSFDFSQG----ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGS 77 (330)
T ss_dssp -CCEEEEEEECCSSCEEEEEEETT----EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEE
T ss_pred cccccceeeccCCCceeeeccCCC----EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEe
Confidence 356678899999999999999996 4999999999999999875 556666 45 999999999999999999999
Q ss_pred CCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceee
Q 004214 94 RDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLY 173 (768)
Q Consensus 94 ~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~ 173 (768)
.|++|++||+......
T Consensus 78 ~D~~v~iw~~~~~~~~---------------------------------------------------------------- 93 (330)
T 2hes_X 78 FDSTVSIWAKEESADR---------------------------------------------------------------- 93 (330)
T ss_dssp TTSCEEEEEC----------------------------------------------------------------------
T ss_pred CCCcEEEEEcccCcCc----------------------------------------------------------------
Confidence 9999999997531100
Q ss_pred eecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCC
Q 004214 174 EQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQ 253 (768)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 253 (768)
T Consensus 94 -------------------------------------------------------------------------------- 93 (330)
T 2hes_X 94 -------------------------------------------------------------------------------- 93 (330)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCC----ceEEEeeecccCc
Q 004214 254 YLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES----RCCVGVGTGHMGA 329 (768)
Q Consensus 254 ~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~ 329 (768)
.........+.+|...|.+++ +.+++.. |++|+.|+.|++||+.. .+++..+.+|...
T Consensus 94 ---------------~~~~~~~~~~~~h~~~V~~v~--~sp~g~~-las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~ 155 (330)
T 2hes_X 94 ---------------TFEMDLLAIIEGHENEVKGVA--WSNDGYY-LATCSRDKSVWIWETDESGEEYECISVLQEHSQD 155 (330)
T ss_dssp ----------------CCCEEEEEEC----CEEEEE--ECTTSCE-EEEEETTSCEEEEECCTTCCCCEEEEEECCCSSC
T ss_pred ---------------cccceeEEEEcCCCCcEEEEE--ECCCCCE-EEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCc
Confidence 001122335667888888887 6676665 99999999999999943 3567788999999
Q ss_pred EEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccC--CCEEEEEeCCCcEEEE
Q 004214 330 VGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN--DSLVCTGSQDRTACVW 407 (768)
Q Consensus 330 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~dg~i~i~ 407 (768)
|.+++|+|++. +|++++.|++|++||.... .......+.+|...|.+++|+|+ +.+|++|+.|++|++|
T Consensus 156 v~~v~~~p~~~-~l~s~s~D~~i~iW~~~~~--------~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw 226 (330)
T 2hes_X 156 VKHVIWHPSEA-LLASSSYDDTVRIWKDYDD--------DWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVW 226 (330)
T ss_dssp EEEEEECSSSS-EEEEEETTSCEEEEEEETT--------EEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEE
T ss_pred eEEEEECCCCC-EEEEEcCCCeEEEEECCCC--------CeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEE
Confidence 99999999965 8999999999999997632 22355667889999999999998 7789999999999999
Q ss_pred eCCCC--------ceEEEEec-cCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCc--eeEE-eecCCC-cEEEEEEEe
Q 004214 408 RLPDL--------VSVVTFRG-HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGS--CLKT-FEGHTS-SVLRASFLT 474 (768)
Q Consensus 408 d~~~~--------~~~~~~~~-~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~--~~~~-~~~~~~-~v~~~~~s~ 474 (768)
|+.++ .....+.+ |...|.+++|++++ +|++++.||.|++||..++. +... +.+|.. .|.+++|+|
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~ 305 (330)
T 2hes_X 227 KYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLE 305 (330)
T ss_dssp EEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-
T ss_pred EecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEec
Confidence 98654 34445554 89999999999755 89999999999999998774 3333 357887 899999999
Q ss_pred --CCCEEEEEeCCCcEEEEECCC
Q 004214 475 --RGAQIVSCGADGLVKLWTVRT 495 (768)
Q Consensus 475 --~~~~l~s~~~dg~i~iwd~~~ 495 (768)
++++|++|+.||+|++|++.+
T Consensus 306 ~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 306 LNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp ----CCEEEEETTSEEEEEEC--
T ss_pred CCCceEEEEecCCCcEEEEEecc
Confidence 789999999999999999864
No 38
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=2.9e-39 Score=335.02 Aligned_cols=296 Identities=20% Similarity=0.272 Sum_probs=250.6
Q ss_pred eeEEEeeecccCCceeEEEE-----ecCCCCEEEEEeCCCcEEEEECCCc-------eeeeeeeCCccceEEEeeeeecC
Q 004214 228 ELILSKRLVGYNEEILDLKF-----LGEEEQYLAVATNIEQVQVYDLSSM-------SCSYVLAGHSEIVLCLDTCALSS 295 (768)
Q Consensus 228 ~~~~~~~~~~~~~~i~~~~~-----~~~~~~~l~~~~~~~~i~i~d~~~~-------~~~~~~~~~~~~v~~l~~~~~~~ 295 (768)
.......+.+|.+.|.+++| .++++++|++|+.|+.|++||+.+. .....+.+|...|.+++ +.++
T Consensus 10 ~~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~--~~~~ 87 (343)
T 2xzm_R 10 QVVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLA--LSQE 87 (343)
T ss_dssp EEEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEE--ECSS
T ss_pred EeeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEE--ECCC
Confidence 34455678899999999999 6668899999999999999998753 45667899999999997 6676
Q ss_pred CCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeE
Q 004214 296 GKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAV 375 (768)
Q Consensus 296 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 375 (768)
+.. +++|+.||+|++||+.+++.+..+.+|...|.+++|+|++. ++++++.|++|++||+.... ......
T Consensus 88 ~~~-l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~-~l~s~~~d~~i~~wd~~~~~--------~~~~~~ 157 (343)
T 2xzm_R 88 NCF-AISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNR-QILSAGAEREIKLWNILGEC--------KFSSAE 157 (343)
T ss_dssp TTE-EEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTT-EEEEEETTSCEEEEESSSCE--------EEECCT
T ss_pred CCE-EEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCC-EEEEEcCCCEEEEEeccCCc--------eeeeec
Confidence 665 99999999999999999999999999999999999999976 79999999999999986320 001111
Q ss_pred eeccCCCeEEEEEccCC----------CEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCc
Q 004214 376 VAAHGKDINSLAVAPND----------SLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKT 445 (768)
Q Consensus 376 ~~~~~~~i~~~~~s~~~----------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~ 445 (768)
...|...|.+++|+|++ .++++++.||.|++|| .+......+.+|...|++++|+|+|++|++|+.||.
T Consensus 158 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~ 236 (343)
T 2xzm_R 158 KENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKK 236 (343)
T ss_dssp TTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCE
T ss_pred ccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEcCCCe
Confidence 23688899999999987 7899999999999999 456777888999999999999999999999999999
Q ss_pred EEEEeCCC-CceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEE--Eec-----------cCCCcEEE
Q 004214 446 IKIWSISD-GSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIA--TYD-----------KHEDKIWA 511 (768)
Q Consensus 446 i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~-----------~~~~~v~~ 511 (768)
|++||+.. ..+...+. +...|.+++|+|++.+++++ .|+.|++|++.+++... .+. +|...|++
T Consensus 237 v~iwd~~~~~~~~~~~~-~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 314 (343)
T 2xzm_R 237 LLIWDILNLTYPQREFD-AGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTS 314 (343)
T ss_dssp EEEEESSCCSSCSEEEE-CSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEE
T ss_pred EEEEECCCCcccceeec-CCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEE
Confidence 99999954 44555553 56779999999999887655 57889999998876543 443 67888999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEcCCH
Q 004214 512 LAVGKKTEMFATGGSDALVNLWHDSTA 538 (768)
Q Consensus 512 l~~s~~~~~l~s~~~dg~v~vw~~~~~ 538 (768)
++|+|+|++|++|+.||.|++|++.++
T Consensus 315 ~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 315 LAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp EEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred EEECCCCCeEEEecCCceEEEEEEEcc
Confidence 999999999999999999999998754
No 39
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=4.9e-39 Score=333.25 Aligned_cols=293 Identities=24% Similarity=0.429 Sum_probs=241.9
Q ss_pred EEEEEEEcCCCcEEEEEE-----ee-CCCccEEEEEeCCCcEEEEECCC-------CeeEEEecCccceeEEEEEcCCCC
Q 004214 21 FCTHYFKGHKGVVSSILF-----HP-DTDKSLLFSGSDDATVRVWDLLA-------KKCVATLDKHFSRVTSMAITSDGS 87 (768)
Q Consensus 21 ~~~~~l~gh~~~V~~l~~-----sp-d~~~~~l~sg~~dg~I~iWd~~~-------~~~~~~l~~h~~~V~~l~fs~d~~ 87 (768)
.+...|.||.+.|++++| +| +++. |++|+.|++|++||+.+ +.+...+.+|...|.+++|+|++.
T Consensus 12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~--l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~ 89 (343)
T 2xzm_R 12 VKRGILEGHSDWVTSIVAGFSQKENEDSPV--LISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENC 89 (343)
T ss_dssp EEEEEEECCSSCEEEEEECCCSSTTCCCCE--EEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTT
T ss_pred eeeeeeccchhhhhheeeEEEeecCCCCCE--EEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCC
Confidence 456789999999999999 66 7766 99999999999999974 356778999999999999999999
Q ss_pred EEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEc
Q 004214 88 TLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNA 167 (768)
Q Consensus 88 ~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~ 167 (768)
+|++++.|++|++||+.+++++
T Consensus 90 ~l~s~s~D~~v~lwd~~~~~~~---------------------------------------------------------- 111 (343)
T 2xzm_R 90 FAISSSWDKTLRLWDLRTGTTY---------------------------------------------------------- 111 (343)
T ss_dssp EEEEEETTSEEEEEETTSSCEE----------------------------------------------------------
T ss_pred EEEEEcCCCcEEEEECCCCcEE----------------------------------------------------------
Confidence 9999999999999998764321
Q ss_pred CCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEE
Q 004214 168 DSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKF 247 (768)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 247 (768)
T Consensus 112 -------------------------------------------------------------------------------- 111 (343)
T 2xzm_R 112 -------------------------------------------------------------------------------- 111 (343)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEee--ec
Q 004214 248 LGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVG--TG 325 (768)
Q Consensus 248 ~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~ 325 (768)
..+.+|...|.+++ +.+++.. |++|+.|+.|++||+......... .+
T Consensus 112 ----------------------------~~~~~h~~~v~~v~--~sp~~~~-l~s~~~d~~i~~wd~~~~~~~~~~~~~~ 160 (343)
T 2xzm_R 112 ----------------------------KRFVGHQSEVYSVA--FSPDNRQ-ILSAGAEREIKLWNILGECKFSSAEKEN 160 (343)
T ss_dssp ----------------------------EEEECCCSCEEEEE--ECSSTTE-EEEEETTSCEEEEESSSCEEEECCTTTS
T ss_pred ----------------------------EEEcCCCCcEEEEE--ECCCCCE-EEEEcCCCEEEEEeccCCceeeeecccC
Confidence 13345667777776 6676665 899999999999999854433322 27
Q ss_pred ccCcEEEEEEecCCC---------cEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEE
Q 004214 326 HMGAVGAVAFSKKLQ---------NFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVC 396 (768)
Q Consensus 326 ~~~~v~~~~~~~~~~---------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 396 (768)
|...|.+++|+|++. .++++++.||.|++||.. ......+..|...|.+++|+|+|++|+
T Consensus 161 ~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-----------~~~~~~~~~h~~~v~~~~~s~~g~~l~ 229 (343)
T 2xzm_R 161 HSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-----------FQIRYTFKAHESNVNHLSISPNGKYIA 229 (343)
T ss_dssp CSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT-----------TEEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred CCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC-----------CceeEEEcCccccceEEEECCCCCEEE
Confidence 889999999999862 489999999999999943 124456678999999999999999999
Q ss_pred EEeCCCcEEEEeCCC-CceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeE--Eee-----------c
Q 004214 397 TGSQDRTACVWRLPD-LVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLK--TFE-----------G 462 (768)
Q Consensus 397 ~~~~dg~i~i~d~~~-~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~--~~~-----------~ 462 (768)
+|+.||.|++||+.+ ......+ .+...|.+++|+|++.+++++ .|+.|++||+.+++... .+. +
T Consensus 230 sgs~dg~v~iwd~~~~~~~~~~~-~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (343)
T 2xzm_R 230 TGGKDKKLLIWDILNLTYPQREF-DAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKG 307 (343)
T ss_dssp EEETTCEEEEEESSCCSSCSEEE-ECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCC
T ss_pred EEcCCCeEEEEECCCCcccceee-cCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcC
Confidence 999999999999954 3444444 356679999999999988755 57889999998876544 443 6
Q ss_pred CCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCe
Q 004214 463 HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE 497 (768)
Q Consensus 463 ~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~ 497 (768)
|...|++++|+|+|++|++|+.||.|++|++.+++
T Consensus 308 ~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g~ 342 (343)
T 2xzm_R 308 KNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETSA 342 (343)
T ss_dssp SCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEEE
T ss_pred CCCceEEEEECCCCCeEEEecCCceEEEEEEEccC
Confidence 88899999999999999999999999999987654
No 40
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.1e-39 Score=349.13 Aligned_cols=343 Identities=14% Similarity=0.175 Sum_probs=290.0
Q ss_pred cEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeee
Q 004214 32 VVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLT 111 (768)
Q Consensus 32 ~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~ 111 (768)
.+++++|+|++++ |++|+.||.|++||+.+++....+..| ..+....|+|++++|++++.||.|++||+.+++...
T Consensus 58 ~~~~~~~s~~g~~--l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~- 133 (420)
T 3vl1_A 58 AGKGNTFEKVGSH--LYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQRE- 133 (420)
T ss_dssp CCTTCEEEEEETT--EEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEE-
T ss_pred cccceeeeecCCe--EEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceee-
Confidence 3458999999999 999999999999999998887777777 456666789999999999999999999987654321
Q ss_pred eecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCccc
Q 004214 112 VPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKR 191 (768)
Q Consensus 112 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (768)
T Consensus 134 -------------------------------------------------------------------------------- 133 (420)
T 3vl1_A 134 -------------------------------------------------------------------------------- 133 (420)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCC
Q 004214 192 GFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSS 271 (768)
Q Consensus 192 ~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~ 271 (768)
.+.+|...|.+++|++ ++.+|++++.|+.|++||+.+
T Consensus 134 ------------------------------------------~~~~h~~~v~~~~~~~-~~~~l~s~s~d~~i~iwd~~~ 170 (420)
T 3vl1_A 134 ------------------------------------------IDQAHVSEITKLKFFP-SGEALISSSQDMQLKIWSVKD 170 (420)
T ss_dssp ------------------------------------------ETTSSSSCEEEEEECT-TSSEEEEEETTSEEEEEETTT
T ss_pred ------------------------------------------ecccccCccEEEEECC-CCCEEEEEeCCCeEEEEeCCC
Confidence 1234667888888885 677999999999999999999
Q ss_pred ceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeec---ccCcEEEEEEecCCCcEEEEEeC
Q 004214 272 MSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTG---HMGAVGAVAFSKKLQNFLVSGSS 348 (768)
Q Consensus 272 ~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~s~~~ 348 (768)
++....+.+|...|.+++ +.+++.. |++++.||.|++||+.+++.+..+.. |...+.++++.|.+...
T Consensus 171 ~~~~~~~~~h~~~v~~~~--~~~~~~~-l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~------ 241 (420)
T 3vl1_A 171 GSNPRTLIGHRATVTDIA--IIDRGRN-VLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQ------ 241 (420)
T ss_dssp CCCCEEEECCSSCEEEEE--EETTTTE-EEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSS------
T ss_pred CcCceEEcCCCCcEEEEE--EcCCCCE-EEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcce------
Confidence 999999999999999998 7777776 99999999999999999999888874 66778888887764421
Q ss_pred CCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEe-ccCCCeEE
Q 004214 349 DHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFR-GHKRGIWS 427 (768)
Q Consensus 349 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~ 427 (768)
....+...+.+++|+|++++|++|+.||.|++||+.+++.+..+. .|...|++
T Consensus 242 --------------------------~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~ 295 (420)
T 3vl1_A 242 --------------------------LHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNS 295 (420)
T ss_dssp --------------------------CGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEE
T ss_pred --------------------------eeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCcee
Confidence 012345678889999999999999999999999999998877765 47889999
Q ss_pred EEEccCCC-EEEEeeCCCcEEEEeCCCCce-eEEeec-CCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCC--------
Q 004214 428 VEFSPVDQ-VVITASGDKTIKIWSISDGSC-LKTFEG-HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTG-------- 496 (768)
Q Consensus 428 v~~s~~~~-~l~t~~~d~~i~iwd~~~~~~-~~~~~~-~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~-------- 496 (768)
++|+|+++ +|++|+.||.|++||+++++. +..+.+ |...|.++ +.+++++|++++.||.|++|++...
T Consensus 296 ~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~ 374 (420)
T 3vl1_A 296 LTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNV-YFAAGALFVSSGFDTSIKLDIISDPESERPAIE 374 (420)
T ss_dssp EEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEE-EEETTEEEEEETTTEEEEEEEECCTTCCSCEEC
T ss_pred EEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEE-EeCCCCEEEEecCCccEEEEeccCCCCCcccee
Confidence 99999998 999999999999999998754 778877 56677777 5568889999999999999998763
Q ss_pred -eEEEEeccCCCcEEEEEEcCCCC---EEEEEeCCCcEEEEEcCC
Q 004214 497 -ECIATYDKHEDKIWALAVGKKTE---MFATGGSDALVNLWHDST 537 (768)
Q Consensus 497 -~~~~~~~~~~~~v~~l~~s~~~~---~l~s~~~dg~v~vw~~~~ 537 (768)
.....+..|.+.|.+++|+|++. .+++++.+|.+.+|++..
T Consensus 375 ~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 375 FETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp TTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred ccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 22234557889999999999999 888888999999999865
No 41
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.5e-38 Score=342.85 Aligned_cols=322 Identities=29% Similarity=0.542 Sum_probs=277.0
Q ss_pred EEEEEEEcCCCcE-EEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEE
Q 004214 21 FCTHYFKGHKGVV-SSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVN 99 (768)
Q Consensus 21 ~~~~~l~gh~~~V-~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~ 99 (768)
.....+.+|.+.| +|+ +++|++ +++|+.||+|++||+.+++++..+.+|.+.|++++|+ +++|++++.||.|+
T Consensus 109 ~~~~~l~~h~~~v~~~~--~~~g~~--l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~ 182 (445)
T 2ovr_B 109 KSPKVLKGHDDHVITCL--QFCGNR--IVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLK 182 (445)
T ss_dssp CCCEEEECSTTSCEEEE--EEETTE--EEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEE
T ss_pred ceeEEecccCCCcEEEE--EEcCCE--EEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEE
Confidence 3457889999875 554 455676 9999999999999999999999999999999999998 66999999999999
Q ss_pred EEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCc
Q 004214 100 LWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSD 179 (768)
Q Consensus 100 vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~ 179 (768)
+||+.+++++.
T Consensus 183 vwd~~~~~~~~--------------------------------------------------------------------- 193 (445)
T 2ovr_B 183 VWNAETGECIH--------------------------------------------------------------------- 193 (445)
T ss_dssp EEETTTTEEEE---------------------------------------------------------------------
T ss_pred EEECCcCcEEE---------------------------------------------------------------------
Confidence 99987654221
Q ss_pred eeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEe
Q 004214 180 VTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVAT 259 (768)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 259 (768)
T Consensus 194 -------------------------------------------------------------------------------- 193 (445)
T 2ovr_B 194 -------------------------------------------------------------------------------- 193 (445)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCC
Q 004214 260 NIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKL 339 (768)
Q Consensus 260 ~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 339 (768)
.+.+|...|.++. +. +.. +++|+.||.|++||+.+++.+..+.+|...|.++++ ++
T Consensus 194 -----------------~~~~h~~~v~~~~--~~--~~~-l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~ 249 (445)
T 2ovr_B 194 -----------------TLYGHTSTVRCMH--LH--EKR-VVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DG 249 (445)
T ss_dssp -----------------EECCCSSCEEEEE--EE--TTE-EEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CS
T ss_pred -----------------EECCCCCcEEEEE--ec--CCE-EEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CC
Confidence 2234555666664 32 333 888999999999999999888888999999999998 33
Q ss_pred CcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEe
Q 004214 340 QNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFR 419 (768)
Q Consensus 340 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 419 (768)
. ++++++.||.|++||+.. .........|...|.+++| ++.++++|+.||.|++||+.+++.+..+.
T Consensus 250 ~-~l~~~~~dg~i~iwd~~~----------~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~ 316 (445)
T 2ovr_B 250 R-RVVSGAYDFMVKVWDPET----------ETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLT 316 (445)
T ss_dssp S-CEEEEETTSCEEEEEGGG----------TEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred C-EEEEEcCCCEEEEEECCC----------CcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEc
Confidence 3 689999999999999873 3355566788899999998 78899999999999999999999999999
Q ss_pred ccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeec---CCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCC
Q 004214 420 GHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEG---HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTG 496 (768)
Q Consensus 420 ~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 496 (768)
+|...+.++.++ ++++++|+.||.|++||+.+++++..+.+ |...|++++|+ +++|++|+.||.|++||+.++
T Consensus 317 ~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~ 392 (445)
T 2ovr_B 317 GHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTG 392 (445)
T ss_dssp CCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTC
T ss_pred CCcccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCC
Confidence 999999988875 67999999999999999999999999986 88899999985 679999999999999999999
Q ss_pred eEEEEe-----ccCCCcEEEEEEcCCCCEEEEEeCCCc----EEEEEcCCH
Q 004214 497 ECIATY-----DKHEDKIWALAVGKKTEMFATGGSDAL----VNLWHDSTA 538 (768)
Q Consensus 497 ~~~~~~-----~~~~~~v~~l~~s~~~~~l~s~~~dg~----v~vw~~~~~ 538 (768)
+.+..+ ..|.+.|++++|+|++.++++|+.||. |.+||+...
T Consensus 393 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 393 EFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp CEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred ceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence 999888 468899999999999999999999998 999998753
No 42
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.6e-38 Score=325.17 Aligned_cols=292 Identities=25% Similarity=0.454 Sum_probs=263.2
Q ss_pred EEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeE
Q 004214 230 ILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSV 309 (768)
Q Consensus 230 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i 309 (768)
.....+.+|...|.+++|++ +++++++++.||.|++|+..+++....+.+|...|.+++ +.+++.. |++|+.||.|
T Consensus 14 ~~~~~~~gh~~~v~~~~~s~-~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~--~~~~~~~-l~s~~~d~~i 89 (312)
T 4ery_A 14 ALKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA--WSSDSNL-LVSASDDKTL 89 (312)
T ss_dssp EEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEE--ECTTSSE-EEEEETTSEE
T ss_pred eeEEEEcccCCcEEEEEECC-CCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEE--EcCCCCE-EEEECCCCEE
Confidence 34566789999999999986 778999999999999999999999999999999999997 7777765 9999999999
Q ss_pred EEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEc
Q 004214 310 RLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVA 389 (768)
Q Consensus 310 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 389 (768)
++||+.+++.+..+.+|...|.+++|+|++. ++++++.||.|++||+... .....+..|...|.+++|+
T Consensus 90 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~----------~~~~~~~~~~~~v~~~~~~ 158 (312)
T 4ery_A 90 KIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTG----------KCLKTLPAHSDPVSAVHFN 158 (312)
T ss_dssp EEEETTTCCEEEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTC----------CEEEEECCCSSCEEEEEEC
T ss_pred EEEECCCCcEEEEEcCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCC----------EEEEEecCCCCcEEEEEEc
Confidence 9999999999999999999999999999965 8999999999999999743 3455667889999999999
Q ss_pred cCCCEEEEEeCCCcEEEEeCCCCceEEEEe-ccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEE
Q 004214 390 PNDSLVCTGSQDRTACVWRLPDLVSVVTFR-GHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVL 468 (768)
Q Consensus 390 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~ 468 (768)
|+++++++++.||.|++||+.+++.+..+. .+..++.+++|+|++++|++++.|+.|++||+.+++++..+.+|...+.
T Consensus 159 ~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 238 (312)
T 4ery_A 159 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 238 (312)
T ss_dssp TTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSS
T ss_pred CCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceE
Confidence 999999999999999999999998877764 4667899999999999999999999999999999999999998876543
Q ss_pred E--EEEE-eCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEe--CCCcEEEEEcC
Q 004214 469 R--ASFL-TRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGG--SDALVNLWHDS 536 (768)
Q Consensus 469 ~--~~~s-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~--~dg~v~vw~~~ 536 (768)
. ..++ +++.+|++|+.||.|++||+.+++++..+.+|...|.+++|+|++++|++++ .||.|++|+..
T Consensus 239 ~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 239 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp CCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred EEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 2 3344 6788999999999999999999999999999999999999999999999987 69999999864
No 43
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.3e-39 Score=329.29 Aligned_cols=293 Identities=25% Similarity=0.423 Sum_probs=241.1
Q ss_pred EEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCc--eeeeee-eC-CccceEEEeeeeecCCCEEEEEEeCC
Q 004214 231 LSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSM--SCSYVL-AG-HSEIVLCLDTCALSSGKILIVTGSKD 306 (768)
Q Consensus 231 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~--~~~~~~-~~-~~~~v~~l~~~~~~~~~~~l~~~~~d 306 (768)
....+.+|.+.|.+++|++. +|++++.|+.|++||+..+ .....+ .+ |...|.+++ +.+++.. |++|+.|
T Consensus 6 ~~~~~~~h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~--~sp~~~~-las~s~D 79 (330)
T 2hes_X 6 LIKSLKLYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVA--WRPHTSL-LAAGSFD 79 (330)
T ss_dssp EEEEEECCSSCEEEEEEETT---EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEE--ECTTSSE-EEEEETT
T ss_pred cceeeccCCCceeeeccCCC---EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEE--ECCCCCE-EEEEeCC
Confidence 44567799999999999864 9999999999999999875 444455 44 999999998 7777765 9999999
Q ss_pred CeEEEEeCCC-------ceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeecc
Q 004214 307 NSVRLWDSES-------RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAH 379 (768)
Q Consensus 307 g~i~iwd~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 379 (768)
+.|++||+.. ..++..+.+|...|.+++|+|++. +|++++.|++|++||+..... .......+..|
T Consensus 80 ~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~-~las~s~D~~v~iwd~~~~~~------~~~~~~~~~~h 152 (330)
T 2hes_X 80 STVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY-YLATCSRDKSVWIWETDESGE------EYECISVLQEH 152 (330)
T ss_dssp SCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSC-EEEEEETTSCEEEEECCTTCC------CCEEEEEECCC
T ss_pred CcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCC-EEEEEeCCCEEEEEeccCCCC------CeEEEEEeccC
Confidence 9999999853 456778889999999999999966 899999999999999953211 22345567789
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC--ceEEEEeccCCCeEEEEEccC--CCEEEEeeCCCcEEEEeCCCC-
Q 004214 380 GKDINSLAVAPNDSLVCTGSQDRTACVWRLPDL--VSVVTFRGHKRGIWSVEFSPV--DQVVITASGDKTIKIWSISDG- 454 (768)
Q Consensus 380 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~v~~v~~s~~--~~~l~t~~~d~~i~iwd~~~~- 454 (768)
...|.+++|+|++.+|++|+.|++|++||..++ +++..+.+|...|++++|+|+ +.+|++|+.|++|++||+..+
T Consensus 153 ~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~ 232 (330)
T 2hes_X 153 SQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDD 232 (330)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEEC
T ss_pred CCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCC
Confidence 999999999999999999999999999998766 678889999999999999998 679999999999999998764
Q ss_pred -------ceeEEeec-CCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCe--EEEE-eccCCC-cEEEEEEcC--CCCE
Q 004214 455 -------SCLKTFEG-HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE--CIAT-YDKHED-KIWALAVGK--KTEM 520 (768)
Q Consensus 455 -------~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~--~~~~-~~~~~~-~v~~l~~s~--~~~~ 520 (768)
.+...+.+ |...|.+++|++++ +|++++.||.|++|+..+++ +... ..+|.. .|++++|+| ++++
T Consensus 233 ~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~ 311 (330)
T 2hes_X 233 EDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTI 311 (330)
T ss_dssp TTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CC
T ss_pred ccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceE
Confidence 45556655 99999999999665 89999999999999998874 3433 356877 899999999 7899
Q ss_pred EEEEeCCCcEEEEEcCC
Q 004214 521 FATGGSDALVNLWHDST 537 (768)
Q Consensus 521 l~s~~~dg~v~vw~~~~ 537 (768)
|++|+.||.|++|++.+
T Consensus 312 las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 312 LATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EEEEETTSEEEEEEC--
T ss_pred EEEecCCCcEEEEEecc
Confidence 99999999999999864
No 44
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-39 Score=346.60 Aligned_cols=323 Identities=15% Similarity=0.224 Sum_probs=269.4
Q ss_pred EEEeecCCCcEEEEEC----CCCE------EEEEEEc----------CCCcEEEEEEeeCCCccEEEEEeCCCcEEEEEC
Q 004214 2 FALLEGADRKVLVWDV----DGGF------CTHYFKG----------HKGVVSSILFHPDTDKSLLFSGSDDATVRVWDL 61 (768)
Q Consensus 2 ~latg~~dg~i~vwd~----~~~~------~~~~l~g----------h~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~ 61 (768)
+||+|+.||.|++||+ .++. ....+.. |.+.|++++|+|++++ |++|+.||.|++||
T Consensus 60 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~--l~~~~~dg~i~i~~- 136 (425)
T 1r5m_A 60 ILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNS--IVTGVENGELRLWN- 136 (425)
T ss_dssp EEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSE--EEEEETTSCEEEEE-
T ss_pred EEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCE--EEEEeCCCeEEEEe-
Confidence 7999999999999999 8888 5666665 7889999999999887 99999999999999
Q ss_pred CCCeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhh
Q 004214 62 LAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQT 141 (768)
Q Consensus 62 ~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 141 (768)
.+++.+..+.+|...|.+++|+|++++|++++.|+.|++||+.+++.+..+..+.....
T Consensus 137 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~--------------------- 195 (425)
T 1r5m_A 137 KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGS--------------------- 195 (425)
T ss_dssp TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC--------------------------
T ss_pred CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCcc---------------------
Confidence 68889999999999999999999999999999999999999998876655432111000
Q ss_pred hhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeecc
Q 004214 142 IKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVE 221 (768)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~ 221 (768)
T Consensus 196 -------------------------------------------------------------------------------- 195 (425)
T 1r5m_A 196 -------------------------------------------------------------------------------- 195 (425)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEE
Q 004214 222 VPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIV 301 (768)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~ 301 (768)
.+... ........+.++. +.++ +. ++
T Consensus 196 -------------------~~~~~-------------------------------~~~~~~~~~~~~~--~~~~-~~-~~ 221 (425)
T 1r5m_A 196 -------------------SINAE-------------------------------NHSGDGSLGVDVE--WVDD-DK-FV 221 (425)
T ss_dssp ------------------------------------------------------------CCCBSCCE--EEET-TE-EE
T ss_pred -------------------ceeec-------------------------------cccCCcceeeEEE--EcCC-CE-EE
Confidence 00000 0000111133333 3333 44 88
Q ss_pred EEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCC
Q 004214 302 TGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGK 381 (768)
Q Consensus 302 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (768)
+++.+|.|++||+.+++.+..+..|...|.+++|+|++. ++++++.||.|++||+... ........|..
T Consensus 222 ~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~----------~~~~~~~~~~~ 290 (425)
T 1r5m_A 222 IPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNK-LLLSASDDGTLRIWHGGNG----------NSQNCFYGHSQ 290 (425)
T ss_dssp EECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTT-EEEEEETTSCEEEECSSSB----------SCSEEECCCSS
T ss_pred EEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCC-EEEEEcCCCEEEEEECCCC----------ccceEecCCCc
Confidence 889999999999999888888889999999999999976 8999999999999998743 34455567899
Q ss_pred CeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCc------
Q 004214 382 DINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGS------ 455 (768)
Q Consensus 382 ~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~------ 455 (768)
.|.+++|+|++ ++++++.||.|++||+.+++.+..+..|..+|.+++|+|++++|++++.||.|++||+.++.
T Consensus 291 ~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~ 369 (425)
T 1r5m_A 291 SIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSL 369 (425)
T ss_dssp CEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC-----
T ss_pred cEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeee
Confidence 99999999999 99999999999999999999999999999999999999999999999999999999999888
Q ss_pred --------------eeEEeecCCC--cEEEEEEEeCCCEEEEEeCCCcEEEEECC
Q 004214 456 --------------CLKTFEGHTS--SVLRASFLTRGAQIVSCGADGLVKLWTVR 494 (768)
Q Consensus 456 --------------~~~~~~~~~~--~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 494 (768)
++..+.+|.. .|++++|+|++++|++++.||.|++|+++
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 370 YGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp ---------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred ecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 8999999977 99999999999999999999999999985
No 45
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.8e-38 Score=335.40 Aligned_cols=239 Identities=23% Similarity=0.416 Sum_probs=190.6
Q ss_pred CCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcE
Q 004214 251 EEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAV 330 (768)
Q Consensus 251 ~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v 330 (768)
+++++++++.|+.|++||+.+++....+.+|...|.+++ +.+++.. |++|+.|+.|++||+.++++...+. +...+
T Consensus 134 dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~--~~p~~~~-l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v 209 (393)
T 1erj_A 134 DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLD--YFPSGDK-LVSGSGDRTVRIWDLRTGQCSLTLS-IEDGV 209 (393)
T ss_dssp TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE--ECTTSSE-EEEEETTSEEEEEETTTTEEEEEEE-CSSCE
T ss_pred CCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEE--EcCCCCE-EEEecCCCcEEEEECCCCeeEEEEE-cCCCc
Confidence 334444444445555555555555556677888888887 6677765 9999999999999999998887765 56789
Q ss_pred EEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 004214 331 GAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLP 410 (768)
Q Consensus 331 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~ 410 (768)
.+++++|....++++|+.||.|++||+..+...... ........+|...|.+++|+|++++|++|+.||.|++||+.
T Consensus 210 ~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~---~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~ 286 (393)
T 1erj_A 210 TTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERL---DSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQ 286 (393)
T ss_dssp EEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEE---C------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred EEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEee---cccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECC
Confidence 999999944558999999999999998754211000 00011225688999999999999999999999999999997
Q ss_pred CC------------ceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEe----
Q 004214 411 DL------------VSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLT---- 474 (768)
Q Consensus 411 ~~------------~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~---- 474 (768)
+. .....+.+|...|.+++|+|++.+|++|+.|+.|++||+.+++++..+.+|...|.+++|++
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~ 366 (393)
T 1erj_A 287 NANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSL 366 (393)
T ss_dssp --------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTT
T ss_pred CCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCc
Confidence 53 34567889999999999999999999999999999999999999999999999999999986
Q ss_pred --CCCEEEEEeCCCcEEEEECCCC
Q 004214 475 --RGAQIVSCGADGLVKLWTVRTG 496 (768)
Q Consensus 475 --~~~~l~s~~~dg~i~iwd~~~~ 496 (768)
++++|++|+.||+|++|++...
T Consensus 367 ~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 367 GPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp CTTCEEEEEEETTSEEEEEEEEEC
T ss_pred CCCCCEEEEECCCCcEEECccccc
Confidence 6889999999999999998653
No 46
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.2e-41 Score=360.69 Aligned_cols=288 Identities=14% Similarity=0.254 Sum_probs=247.3
Q ss_pred cCCceeEEEEecCCCCEEEEEeCCCcEEEEECCC----ceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEe
Q 004214 238 YNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSS----MSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWD 313 (768)
Q Consensus 238 ~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~----~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd 313 (768)
+...|.+++|++ ++.+|++++.+|.|++||+.+ ......+.+|...|.++. +.++++.+|++++.||.|++||
T Consensus 66 ~~~~v~~~~~s~-~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~--~~~~~~~~l~s~~~dg~v~iwd 142 (416)
T 2pm9_A 66 VDSKFNDLDWSH-NNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVK--FNAKQDNVLASGGNNGEIFIWD 142 (416)
T ss_dssp CSSCEEEEEECS-SSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEE--ECSSSTTBEEEECSSSCEEBCB
T ss_pred cCCceEEEEECC-CCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEE--EcCCCCCEEEEEcCCCeEEEEE
Confidence 455778888874 677899999999999999987 457778899999999998 7777444599999999999999
Q ss_pred CCCce------EEE---eeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeecc-----
Q 004214 314 SESRC------CVG---VGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAH----- 379 (768)
Q Consensus 314 ~~~~~------~~~---~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~----- 379 (768)
+.++. ... ....|...|.+++|+|++..++++++.||.|++||+... ........+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~----------~~~~~~~~~~~~~~ 212 (416)
T 2pm9_A 143 MNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAK----------KEVIHLSYTSPNSG 212 (416)
T ss_dssp TTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTT----------EEEEEECCCCCSSC
T ss_pred CCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCC----------CcceEEeccccccc
Confidence 99876 322 346799999999999997779999999999999999853 233333333
Q ss_pred -CCCeEEEEEccCC-CEEEEEeCCC---cEEEEeCCCC-ceEEEEe-ccCCCeEEEEEcc-CCCEEEEeeCCCcEEEEeC
Q 004214 380 -GKDINSLAVAPND-SLVCTGSQDR---TACVWRLPDL-VSVVTFR-GHKRGIWSVEFSP-VDQVVITASGDKTIKIWSI 451 (768)
Q Consensus 380 -~~~i~~~~~s~~~-~~l~~~~~dg---~i~i~d~~~~-~~~~~~~-~~~~~v~~v~~s~-~~~~l~t~~~d~~i~iwd~ 451 (768)
...|.+++|+|++ .++++++.|+ .|++||++++ .+...+. +|...|++++|+| ++++|++++.|+.|++||+
T Consensus 213 ~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~ 292 (416)
T 2pm9_A 213 IKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNP 292 (416)
T ss_dssp CCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECS
T ss_pred cCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeC
Confidence 7889999999997 6899999999 9999999986 6677777 8999999999999 8999999999999999999
Q ss_pred CCCceeEEeecCCCcEEEEEEEeCC-CEEEEEeCCCcEEEEECCCCeEEEEec---------------------------
Q 004214 452 SDGSCLKTFEGHTSSVLRASFLTRG-AQIVSCGADGLVKLWTVRTGECIATYD--------------------------- 503 (768)
Q Consensus 452 ~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~--------------------------- 503 (768)
.+++++..+.+|...|++++|+|++ .+|++++.||.|++|++.++.......
T Consensus 293 ~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (416)
T 2pm9_A 293 ESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPS 372 (416)
T ss_dssp SSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCC
T ss_pred CCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccc
Confidence 9999999999999999999999999 899999999999999998765332211
Q ss_pred --------cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCH
Q 004214 504 --------KHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTA 538 (768)
Q Consensus 504 --------~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~ 538 (768)
.|..++.+++|+|+|++|++++.||.|+||++.++
T Consensus 373 ~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 373 VFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp SSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred cccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 15677889999999999999999999999999874
No 47
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=3.8e-38 Score=332.96 Aligned_cols=285 Identities=27% Similarity=0.471 Sum_probs=250.2
Q ss_pred cccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCcc------------------ceEEEeeeeecCCC
Q 004214 236 VGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSE------------------IVLCLDTCALSSGK 297 (768)
Q Consensus 236 ~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~------------------~v~~l~~~~~~~~~ 297 (768)
.+|...|.+++|++ ++++|++++ ++.+++|++.++..+..+..|.. .|.+++ +.+++.
T Consensus 61 ~~h~~~V~~v~fsp-dg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~--~s~dg~ 136 (393)
T 1erj_A 61 LDHTSVVCCVKFSN-DGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVC--FSPDGK 136 (393)
T ss_dssp EECSSCCCEEEECT-TSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEE--ECTTSS
T ss_pred cCCCCEEEEEEECC-CCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEE--ECCCCC
Confidence 36899999999986 677888876 58999999999988877765542 377886 777776
Q ss_pred EEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEee
Q 004214 298 ILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVA 377 (768)
Q Consensus 298 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 377 (768)
. |++|+.||.|++||+.+++.+..+.+|...|.+++|+|++. +|++++.|++|++||+..+. ... ..
T Consensus 137 ~-l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~-~l~s~s~d~~v~iwd~~~~~----------~~~-~~ 203 (393)
T 1erj_A 137 F-LATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGD-KLVSGSGDRTVRIWDLRTGQ----------CSL-TL 203 (393)
T ss_dssp E-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTE----------EEE-EE
T ss_pred E-EEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCC-EEEEecCCCcEEEEECCCCe----------eEE-EE
Confidence 5 99999999999999999999999999999999999999976 79999999999999997531 222 23
Q ss_pred ccCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCceEEEE-------eccCCCeEEEEEccCCCEEEEeeCCCcEEEE
Q 004214 378 AHGKDINSLAVAP-NDSLVCTGSQDRTACVWRLPDLVSVVTF-------RGHKRGIWSVEFSPVDQVVITASGDKTIKIW 449 (768)
Q Consensus 378 ~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~-------~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iw 449 (768)
.+...+.+++|+| ++++|++|+.||.|++||+.++..+..+ .+|...|++++|+|++++|++|+.|++|++|
T Consensus 204 ~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~w 283 (393)
T 1erj_A 204 SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLW 283 (393)
T ss_dssp ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 4667899999999 8999999999999999999999887776 5799999999999999999999999999999
Q ss_pred eCCC------------CceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcC-
Q 004214 450 SISD------------GSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGK- 516 (768)
Q Consensus 450 d~~~------------~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~- 516 (768)
|+.+ +.+...+.+|...|.+++|+|++.+|++|+.||.|++||+.+++++..+.+|...|.+++|++
T Consensus 284 d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~ 363 (393)
T 1erj_A 284 NLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANG 363 (393)
T ss_dssp EC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSS
T ss_pred ECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCC
Confidence 9975 345678889999999999999999999999999999999999999999999999999999986
Q ss_pred -----CCCEEEEEeCCCcEEEEEcCC
Q 004214 517 -----KTEMFATGGSDALVNLWHDST 537 (768)
Q Consensus 517 -----~~~~l~s~~~dg~v~vw~~~~ 537 (768)
++++|++|+.||.|++|+...
T Consensus 364 ~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 364 SSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp CTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred cCcCCCCCEEEEECCCCcEEECcccc
Confidence 688999999999999999764
No 48
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=3.3e-38 Score=327.37 Aligned_cols=297 Identities=28% Similarity=0.450 Sum_probs=244.2
Q ss_pred CCCEEEEEEEcCCCcEEEEEEeeCC-CccEEEEEeCCCcEEEEECCCC-----eeEEEecCccceeEEEEEcCCCCEEEE
Q 004214 18 DGGFCTHYFKGHKGVVSSILFHPDT-DKSLLFSGSDDATVRVWDLLAK-----KCVATLDKHFSRVTSMAITSDGSTLIS 91 (768)
Q Consensus 18 ~~~~~~~~l~gh~~~V~~l~~spd~-~~~~l~sg~~dg~I~iWd~~~~-----~~~~~l~~h~~~V~~l~fs~d~~~L~s 91 (768)
++..+..+|+||.+.|++|+|+|++ ++ |+||+.||+|+|||+.++ .+...+.+|...|.+++|+|++++|++
T Consensus 26 ~~~~l~~tL~GH~~~V~~v~~sp~~~~~--l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s 103 (340)
T 4aow_A 26 EQMTLRGTLKGHNGWVTQIATTPQFPDM--ILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALS 103 (340)
T ss_dssp CEEEEEEEECCCSSCEEEEEECTTCTTE--EEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred CceEEEEEECCccCCEEEEEEeCCCCCE--EEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEE
Confidence 4555667899999999999999984 44 999999999999998754 357788999999999999999999999
Q ss_pred EeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCce
Q 004214 92 AGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSAC 171 (768)
Q Consensus 92 ~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~ 171 (768)
++.|+.|++|+..........
T Consensus 104 ~~~d~~i~~~~~~~~~~~~~~----------------------------------------------------------- 124 (340)
T 4aow_A 104 GSWDGTLRLWDLTTGTTTRRF----------------------------------------------------------- 124 (340)
T ss_dssp EETTSEEEEEETTTTEEEEEE-----------------------------------------------------------
T ss_pred EcccccceEEeecccceeeee-----------------------------------------------------------
Confidence 999999999998764322111
Q ss_pred eeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCC
Q 004214 172 LYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEE 251 (768)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 251 (768)
T Consensus 125 -------------------------------------------------------------------------------- 124 (340)
T 4aow_A 125 -------------------------------------------------------------------------------- 124 (340)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceE-EEeeecccCcE
Q 004214 252 EQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC-VGVGTGHMGAV 330 (768)
Q Consensus 252 ~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~v 330 (768)
..+...+.+.. +.+.+.. +++|+.|+.+++||...... .....+|...+
T Consensus 125 ---------------------------~~~~~~~~~~~--~~~~~~~-l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v 174 (340)
T 4aow_A 125 ---------------------------VGHTKDVLSVA--FSSDNRQ-IVSGSRDKTIKLWNTLGVCKYTVQDESHSEWV 174 (340)
T ss_dssp ---------------------------ECCSSCEEEEE--ECTTSSC-EEEEETTSCEEEECTTSCEEEEECSSSCSSCE
T ss_pred ---------------------------cCCCCceeEEE--EeecCcc-ceeecCCCeEEEEEeCCCceEEEEeccccCcc
Confidence 01111222222 3344554 89999999999999976554 44566899999
Q ss_pred EEEEEecCCC-cEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeC
Q 004214 331 GAVAFSKKLQ-NFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRL 409 (768)
Q Consensus 331 ~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~ 409 (768)
..++|++++. .++++++.|+.|++||+.. ......+.+|...|++++|+|++++|++|+.||.|++||+
T Consensus 175 ~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~----------~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~ 244 (340)
T 4aow_A 175 SCVRFSPNSSNPIIVSCGWDKLVKVWNLAN----------CKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDL 244 (340)
T ss_dssp EEEEECSCSSSCEEEEEETTSCEEEEETTT----------TEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEET
T ss_pred cceEEccCCCCcEEEEEcCCCEEEEEECCC----------CceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEe
Confidence 9999998754 3678999999999999984 3456667789999999999999999999999999999999
Q ss_pred CCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEee---------cCCCcEEEEEEEeCCCEEE
Q 004214 410 PDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFE---------GHTSSVLRASFLTRGAQIV 480 (768)
Q Consensus 410 ~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~---------~~~~~v~~~~~s~~~~~l~ 480 (768)
.+.+.+..+.. ...|.+++|+|++.++ +++.|+.|++||++++.++..+. +|...|++++|+|+|++|+
T Consensus 245 ~~~~~~~~~~~-~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~ 322 (340)
T 4aow_A 245 NEGKHLYTLDG-GDIINALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLF 322 (340)
T ss_dssp TTTEEEEEEEC-SSCEEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEE
T ss_pred ccCceeeeecC-CceEEeeecCCCCcee-eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEE
Confidence 99999988875 4689999999987655 55578999999999887776654 6889999999999999999
Q ss_pred EEeCCCcEEEEECCCCe
Q 004214 481 SCGADGLVKLWTVRTGE 497 (768)
Q Consensus 481 s~~~dg~i~iwd~~~~~ 497 (768)
+|+.||.|+|||+.+|+
T Consensus 323 sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 323 AGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EEETTSCEEEEEEEC--
T ss_pred EEeCCCEEEEEeCCCcC
Confidence 99999999999999885
No 49
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=2.2e-37 Score=335.90 Aligned_cols=324 Identities=27% Similarity=0.457 Sum_probs=271.5
Q ss_pred EEEEEEEcCCCc-EEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEE
Q 004214 21 FCTHYFKGHKGV-VSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVN 99 (768)
Q Consensus 21 ~~~~~l~gh~~~-V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~ 99 (768)
.....+.+|.+. ++++.|+ +++ +++|+.||+|++||+.+++.+..+.+|.+.|++++|+|++ +|++++.||.|+
T Consensus 112 ~~~~~l~~h~~~v~~~~~~~--~~~--l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~ 186 (464)
T 3v7d_B 112 PQRTTLRGHMTSVITCLQFE--DNY--VITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVR 186 (464)
T ss_dssp CEEEEEECCSSSCEEEEEEE--TTE--EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEE
T ss_pred cceEEEcCCCCCcEEEEEEC--CCE--EEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEE
Confidence 456789999887 5666664 455 9999999999999999999999999999999999999988 999999999999
Q ss_pred EEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCc
Q 004214 100 LWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSD 179 (768)
Q Consensus 100 vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~ 179 (768)
+||+.+++++.
T Consensus 187 vwd~~~~~~~~--------------------------------------------------------------------- 197 (464)
T 3v7d_B 187 VWDIKKGCCTH--------------------------------------------------------------------- 197 (464)
T ss_dssp EEETTTTEEEE---------------------------------------------------------------------
T ss_pred EEECCCCcEEE---------------------------------------------------------------------
Confidence 99987654221
Q ss_pred eeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEe
Q 004214 180 VTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVAT 259 (768)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 259 (768)
T Consensus 198 -------------------------------------------------------------------------------- 197 (464)
T 3v7d_B 198 -------------------------------------------------------------------------------- 197 (464)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCce---------------------
Q 004214 260 NIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC--------------------- 318 (768)
Q Consensus 260 ~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--------------------- 318 (768)
.+.+|...|.++++...+++ .++++|+.||.|++||+.++.
T Consensus 198 -----------------~~~~h~~~v~~l~~~~~~~~-~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (464)
T 3v7d_B 198 -----------------VFEGHNSTVRCLDIVEYKNI-KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEEN 259 (464)
T ss_dssp -----------------EECCCSSCEEEEEEEESSSC-EEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGC
T ss_pred -----------------EECCCCCccEEEEEecCCCC-CEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCC
Confidence 23345566666653333333 459999999999999998764
Q ss_pred --EEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEE
Q 004214 319 --CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVC 396 (768)
Q Consensus 319 --~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 396 (768)
....+.+|...+.++. +++. ++++++.||.|++||+.. ........+|...|.+++|+|++++++
T Consensus 260 ~~~~~~~~~~~~~v~~~~--~~~~-~l~~~~~d~~i~vwd~~~----------~~~~~~~~~~~~~v~~~~~~~~~~~l~ 326 (464)
T 3v7d_B 260 PYFVGVLRGHMASVRTVS--GHGN-IVVSGSYDNTLIVWDVAQ----------MKCLYILSGHTDRIYSTIYDHERKRCI 326 (464)
T ss_dssp TTEEEEECCCSSCEEEEE--EETT-EEEEEETTSCEEEEETTT----------TEEEEEECCCSSCEEEEEEETTTTEEE
T ss_pred eEEEEEccCccceEEEEc--CCCC-EEEEEeCCCeEEEEECCC----------CcEEEEecCCCCCEEEEEEcCCCCEEE
Confidence 2556778999998885 4433 899999999999999973 335666778999999999999999999
Q ss_pred EEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCC
Q 004214 397 TGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRG 476 (768)
Q Consensus 397 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~ 476 (768)
+|+.||.|++||+.+++.+..+.+|...|.+++|+ +.+|++++.||.|++||+.++.....+. |...+..++|++++
T Consensus 327 sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~ 403 (464)
T 3v7d_B 327 SASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYVSD 403 (464)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEEECS
T ss_pred EEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec-CCCCccEEEEEeCC
Confidence 99999999999999999999999999999999998 6899999999999999999988776665 77778889999999
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEE-eccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004214 477 AQIVSCGADGLVKLWTVRTGECIAT-YDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 534 (768)
Q Consensus 477 ~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~ 534 (768)
+++++|+ ||.|++||+.+++++.. +..|...|++++|+ ....+++++.||.+.+|-
T Consensus 404 ~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 404 NILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLEI 460 (464)
T ss_dssp SEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred CEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEEE
Confidence 9999998 89999999999999986 66789999999997 445556666777666553
No 50
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.5e-40 Score=355.24 Aligned_cols=283 Identities=13% Similarity=0.118 Sum_probs=217.9
Q ss_pred ccCCceeEEEEecC-----CCCEEEEEeCCCcEEEEECCCcee-----------eeeeeCCccceEEEeeeeecCCCEEE
Q 004214 237 GYNEEILDLKFLGE-----EEQYLAVATNIEQVQVYDLSSMSC-----------SYVLAGHSEIVLCLDTCALSSGKILI 300 (768)
Q Consensus 237 ~~~~~i~~~~~~~~-----~~~~l~~~~~~~~i~i~d~~~~~~-----------~~~~~~~~~~v~~l~~~~~~~~~~~l 300 (768)
++.+.|.+++|+|. ++.+||+++.||.|++||+.++.. ...+.+|...|.+++ +.++ . .|
T Consensus 205 ~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~--~s~~-~-~l 280 (524)
T 2j04_B 205 HSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFD--FLSP-T-TV 280 (524)
T ss_dssp ECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEE--ESSS-S-EE
T ss_pred ecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEE--ecCC-C-eE
Confidence 34567788888874 357999999999999999987642 236788999999997 5554 4 49
Q ss_pred EEEeCCCeEEEEeCCCc-eEEEeeecccCcEEEE--EEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEee
Q 004214 301 VTGSKDNSVRLWDSESR-CCVGVGTGHMGAVGAV--AFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVA 377 (768)
Q Consensus 301 ~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~--~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 377 (768)
++|+.||+|++||+.++ .+...+.+|...|.++ +|+|++..+|++++.|++|++||++.. .......
T Consensus 281 asgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~----------~~~~~~~ 350 (524)
T 2j04_B 281 VCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDI----------ATTKTTV 350 (524)
T ss_dssp EEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGH----------HHHCEEE
T ss_pred EEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCC----------Ccccccc
Confidence 99999999999999876 3455678999999999 567776468999999999999998732 2233334
Q ss_pred ccCC--CeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCc
Q 004214 378 AHGK--DINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGS 455 (768)
Q Consensus 378 ~~~~--~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~ 455 (768)
+|.. .|.+++|+|+++.+++++.|++|++||++++..+..+.+|...|++++|+|++++|++|+.||+|++||+..+
T Consensus 351 ~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~- 429 (524)
T 2j04_B 351 SRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARR- 429 (524)
T ss_dssp EECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS-
T ss_pred cccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHh-
Confidence 4543 5889999999999999999999999999999988889999999999999999999999999999999998654
Q ss_pred eeEEeec-----CCCcEEEEEEEeCCCEEEEEeCCCcEEEEECC-CCeEEEEeccCCCcEEEEEEcCCCC---EEEEEeC
Q 004214 456 CLKTFEG-----HTSSVLRASFLTRGAQIVSCGADGLVKLWTVR-TGECIATYDKHEDKIWALAVGKKTE---MFATGGS 526 (768)
Q Consensus 456 ~~~~~~~-----~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~l~~s~~~~---~l~s~~~ 526 (768)
.+..+.. +...+.+++|+|+|..+. .. +.+.+|+.. ++.++.++.+|...|++++|+|+++ .+|+|+.
T Consensus 430 ~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~-~~--~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~ 506 (524)
T 2j04_B 430 LLHGIKNSSATQKSLRLWKWDYSIKDDKYR-ID--SSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNS 506 (524)
T ss_dssp TTTCC------CCCCEEEECBCCSSSCEEE-EC--CCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECT
T ss_pred hccccccCccceeeeEEEEeccCCCCCeEE-cc--CCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhcc
Confidence 3332221 122577999999998553 22 234445443 5778889999999999999999964 9999999
Q ss_pred CCcEEEEEcCC
Q 004214 527 DALVNLWHDST 537 (768)
Q Consensus 527 dg~v~vw~~~~ 537 (768)
||.|+||++.-
T Consensus 507 ~g~vrlw~l~~ 517 (524)
T 2j04_B 507 AGLLTLEYLSL 517 (524)
T ss_dssp TSEEEEEECSC
T ss_pred CceEEEEEccc
Confidence 99999999864
No 51
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=5.3e-37 Score=318.24 Aligned_cols=297 Identities=22% Similarity=0.348 Sum_probs=261.0
Q ss_pred eeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCce-----eeeeeeCCccceEEEeeeeecCCCEEEEE
Q 004214 228 ELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMS-----CSYVLAGHSEIVLCLDTCALSSGKILIVT 302 (768)
Q Consensus 228 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~-----~~~~~~~~~~~v~~l~~~~~~~~~~~l~~ 302 (768)
.+.+...+.||.+.|.+++|+|.++++|++|+.|+.|++||+.+.+ +...+.+|...|.++. +.+++.. |++
T Consensus 27 ~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~--~s~dg~~-l~s 103 (340)
T 4aow_A 27 QMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV--ISSDGQF-ALS 103 (340)
T ss_dssp EEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEE--ECTTSSE-EEE
T ss_pred ceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEE--ECCCCCE-EEE
Confidence 4455667899999999999998888999999999999999987653 4567889999999997 7777765 999
Q ss_pred EeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCC
Q 004214 303 GSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKD 382 (768)
Q Consensus 303 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (768)
|+.||.|++|+............+...+..+.+++++. ++++++.|+.+++||+... .........|...
T Consensus 104 ~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~s~d~~~~~~d~~~~---------~~~~~~~~~~~~~ 173 (340)
T 4aow_A 104 GSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNR-QIVSGSRDKTIKLWNTLGV---------CKYTVQDESHSEW 173 (340)
T ss_dssp EETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSS-CEEEEETTSCEEEECTTSC---------EEEEECSSSCSSC
T ss_pred EcccccceEEeecccceeeeecCCCCceeEEEEeecCc-cceeecCCCeEEEEEeCCC---------ceEEEEeccccCc
Confidence 99999999999999999999999999999999999866 7999999999999998642 2233445678899
Q ss_pred eEEEEEccCC--CEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEe
Q 004214 383 INSLAVAPND--SLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTF 460 (768)
Q Consensus 383 i~~~~~s~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~ 460 (768)
+..++|++++ .++++++.|+.|++||+.+++....+.+|..+|++++|+|++++|++|+.||.|++||+.+++++..+
T Consensus 174 v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~ 253 (340)
T 4aow_A 174 VSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTL 253 (340)
T ss_dssp EEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred ccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeee
Confidence 9999999864 57889999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEec---------cCCCcEEEEEEcCCCCEEEEEeCCCcEE
Q 004214 461 EGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD---------KHEDKIWALAVGKKTEMFATGGSDALVN 531 (768)
Q Consensus 461 ~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---------~~~~~v~~l~~s~~~~~l~s~~~dg~v~ 531 (768)
.+ ...|.++.|+|++.++ +++.|+.|++||++++.++..+. +|...|++++|+|++++|++|+.||.|+
T Consensus 254 ~~-~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~ 331 (340)
T 4aow_A 254 DG-GDIINALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVR 331 (340)
T ss_dssp EC-SSCEEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEE
T ss_pred cC-CceEEeeecCCCCcee-eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEE
Confidence 84 4689999999987654 56679999999999988777654 5888999999999999999999999999
Q ss_pred EEEcCCHH
Q 004214 532 LWHDSTAA 539 (768)
Q Consensus 532 vw~~~~~~ 539 (768)
||++.++.
T Consensus 332 iW~~~tGt 339 (340)
T 4aow_A 332 VWQVTIGT 339 (340)
T ss_dssp EEEEEC--
T ss_pred EEeCCCcC
Confidence 99999875
No 52
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.2e-37 Score=315.75 Aligned_cols=300 Identities=22% Similarity=0.307 Sum_probs=256.4
Q ss_pred ECCC-CEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEeC
Q 004214 16 DVDG-GFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGR 94 (768)
Q Consensus 16 d~~~-~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~ 94 (768)
|..+ .+.++.+.+|.+.|++++| |++.+ |++|+.||.|++||+.+++....+..|...|.+++|+|++++|++++.
T Consensus 3 d~~~~~~~~~~l~~h~~~v~~~~~-~~~~~--l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 79 (313)
T 3odt_A 3 DPFTGYQLSATLKGHDQDVRDVVA-VDDSK--VASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGK 79 (313)
T ss_dssp --CCCCEEEEEECCCSSCEEEEEE-EETTE--EEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEET
T ss_pred CccccHHHHHHhhCCCCCcEEEEe-cCCCE--EEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecC
Confidence 3433 3778899999999999999 88887 999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeee
Q 004214 95 DKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYE 174 (768)
Q Consensus 95 dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~ 174 (768)
||.|++|++....
T Consensus 80 dg~i~~~~~~~~~------------------------------------------------------------------- 92 (313)
T 3odt_A 80 DTMINGVPLFATS------------------------------------------------------------------- 92 (313)
T ss_dssp TSCEEEEETTCCT-------------------------------------------------------------------
T ss_pred CCeEEEEEeeecC-------------------------------------------------------------------
Confidence 9999999985421
Q ss_pred ecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCE
Q 004214 175 QKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQY 254 (768)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 254 (768)
T Consensus 93 -------------------------------------------------------------------------------- 92 (313)
T 3odt_A 93 -------------------------------------------------------------------------------- 92 (313)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEE
Q 004214 255 LAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVA 334 (768)
Q Consensus 255 l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~ 334 (768)
.......+.+|...+.++. + ++. ++++++.||.|++|| .+.....+..|...+.+++
T Consensus 93 ----------------~~~~~~~~~~~~~~i~~~~--~--~~~-~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~ 149 (313)
T 3odt_A 93 ----------------GEDPLYTLIGHQGNVCSLS--F--QDG-VVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAK 149 (313)
T ss_dssp ----------------TSCC-CEECCCSSCEEEEE--E--ETT-EEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEE
T ss_pred ----------------CCCcccchhhcccCEEEEE--e--cCC-EEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEE
Confidence 0011123445777777776 3 344 499999999999999 7778888899999999999
Q ss_pred EecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeec-cCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCc
Q 004214 335 FSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAA-HGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLV 413 (768)
Q Consensus 335 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~ 413 (768)
+.|....++++++.||.|++||... ....... |...+.+++|+|++. +++++.||.|++||+++++
T Consensus 150 ~~~~~~~~l~~~~~d~~i~i~d~~~------------~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~ 216 (313)
T 3odt_A 150 VVSFSENKFLTASADKTIKLWQNDK------------VIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGD 216 (313)
T ss_dssp EEETTTTEEEEEETTSCEEEEETTE------------EEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCC
T ss_pred EccCCCCEEEEEECCCCEEEEecCc------------eEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchh
Confidence 9984456899999999999999431 2333344 889999999999998 9999999999999999999
Q ss_pred eEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEEC
Q 004214 414 SVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTV 493 (768)
Q Consensus 414 ~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 493 (768)
.+..+.+|..+|++++|+|++ .|++++.||.|++||+.+++++..+..|...|.+++|+|+++ +++++.||.|++||+
T Consensus 217 ~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~ 294 (313)
T 3odt_A 217 VLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQ 294 (313)
T ss_dssp EEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEES
T ss_pred hhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeC
Confidence 999999999999999999999 588999999999999999999999999999999999999998 667999999999999
Q ss_pred CCCeEEEEec
Q 004214 494 RTGECIATYD 503 (768)
Q Consensus 494 ~~~~~~~~~~ 503 (768)
.+++.+....
T Consensus 295 ~~~~~~~~~~ 304 (313)
T 3odt_A 295 EKSRWASEDE 304 (313)
T ss_dssp CGGGCCC---
T ss_pred CCCceeehhh
Confidence 9887665443
No 53
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.4e-39 Score=344.60 Aligned_cols=366 Identities=14% Similarity=0.237 Sum_probs=279.1
Q ss_pred EEECCCCEEEEEE-EcCCCcEEEEEEee-CCCccEEEEEeCCCcEEEEECCC---Ce---eEEEecCccceeEEEEEcCC
Q 004214 14 VWDVDGGFCTHYF-KGHKGVVSSILFHP-DTDKSLLFSGSDDATVRVWDLLA---KK---CVATLDKHFSRVTSMAITSD 85 (768)
Q Consensus 14 vwd~~~~~~~~~l-~gh~~~V~~l~~sp-d~~~~~l~sg~~dg~I~iWd~~~---~~---~~~~l~~h~~~V~~l~fs~d 85 (768)
.|+ .+++.+..+ .+|.+.|++++|+| ++++ |++|+.||+|+|||+.+ +. ....+ +|.+.|++++|+|+
T Consensus 47 ~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~--l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~ 122 (437)
T 3gre_A 47 MGN-LRGKLIATLMENEPNSITSSAVSPGETPY--LITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPN 122 (437)
T ss_dssp GGG-CCCCEEEEECTTTTSCEEEEEEECSSSCE--EEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTT
T ss_pred ccc-ccceEEeeeccCCCCceEEEEECCCCCCE--EEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCC
Confidence 477 556778888 89999999999999 8887 99999999999999876 43 23333 49999999999999
Q ss_pred CCEEEEEeCCCeEEEEECC---CCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEE
Q 004214 86 GSTLISAGRDKVVNLWDLR---DYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIV 162 (768)
Q Consensus 86 ~~~L~s~~~dg~i~vWd~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i 162 (768)
+++|++++.||.|++||+. +++.......+ .+..+.+.+.+
T Consensus 123 ~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~-~i~~~~~~~~~----------------------------------- 166 (437)
T 3gre_A 123 FDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCE-CIRKINLKNFG----------------------------------- 166 (437)
T ss_dssp SSEEEEEETTSEEEEEEEEEEEETTEEEEEEEE-EEEEEEGGGGS-----------------------------------
T ss_pred CCEEEEEeCCCEEEEEEeccccCCceeeccccc-eeEEEEccCcc-----------------------------------
Confidence 9999999999999999985 44333322211 22222222110
Q ss_pred EEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCce
Q 004214 163 RMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEI 242 (768)
Q Consensus 163 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i 242 (768)
+...+
T Consensus 167 ---------------------------------------------------------------------------~~~~~ 171 (437)
T 3gre_A 167 ---------------------------------------------------------------------------KNEYA 171 (437)
T ss_dssp ---------------------------------------------------------------------------SCCCE
T ss_pred ---------------------------------------------------------------------------cccCc
Confidence 22334
Q ss_pred eEEEEe-cCCCCEEEEEeCCCcEEEEECCCceeeeeeeC--CccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceE
Q 004214 243 LDLKFL-GEEEQYLAVATNIEQVQVYDLSSMSCSYVLAG--HSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC 319 (768)
Q Consensus 243 ~~~~~~-~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~--~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 319 (768)
.++.+. .+++.++++++.++.|++||+.+++.+..+.+ |...|.+++ +.+++.. |++|+.||.|++||+.++++
T Consensus 172 ~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~--~s~~~~~-l~s~~~dg~i~iwd~~~~~~ 248 (437)
T 3gre_A 172 VRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSIC--IDEECCV-LILGTTRGIIDIWDIRFNVL 248 (437)
T ss_dssp EEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEE--ECTTSCE-EEEEETTSCEEEEETTTTEE
T ss_pred eEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEE--ECCCCCE-EEEEcCCCeEEEEEcCCccE
Confidence 444432 35778999999999999999999999999988 899999997 6666655 99999999999999999999
Q ss_pred EEeee-cccCcEEEEEEecC---CCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEE
Q 004214 320 VGVGT-GHMGAVGAVAFSKK---LQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLV 395 (768)
Q Consensus 320 ~~~~~-~~~~~v~~~~~~~~---~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 395 (768)
+..+. .|..+|.+++++|. ...++++++.||.|++||+.. ......+..|...+..+.|+|+++.+
T Consensus 249 ~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~l 318 (437)
T 3gre_A 249 IRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVK----------GHCQYAFINSDEQPSMEHFLPIEKGL 318 (437)
T ss_dssp EEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTT----------TEEEEEEESSSSCCCGGGGSCBCSSG
T ss_pred EEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCC----------CcEEEEEEcCCCCCccceeccccccc
Confidence 98876 78889999977653 234899999999999999974 34566777888888888999987665
Q ss_pred EEEeCCCcEEEEeCCCCceEEEEec--cCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCC---cEEEE
Q 004214 396 CTGSQDRTACVWRLPDLVSVVTFRG--HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTS---SVLRA 470 (768)
Q Consensus 396 ~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~---~v~~~ 470 (768)
.+.. +.+ |...|++++|+ ++++|++|+.|+.|++||+.++++...+.+|.. .+...
T Consensus 319 ----~~~~--------------~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 379 (437)
T 3gre_A 319 ----EELN--------------FCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPT 379 (437)
T ss_dssp ----GGCC--------------CCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEE
T ss_pred ----ccce--------------ecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEE
Confidence 1111 344 88999999999 789999999999999999999999999988643 44555
Q ss_pred EEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCC--CCEEEEEeCCCcEEEEE
Q 004214 471 SFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKK--TEMFATGGSDALVNLWH 534 (768)
Q Consensus 471 ~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~--~~~l~s~~~dg~v~vw~ 534 (768)
.++++..+++.. |+...+........|.+.|++++|+++ +.+|++|+.||.|+||+
T Consensus 380 ~~~~~~~~~~~~--------~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 380 QVTANLTMLLRK--------MKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp EEETTEEEEEEE--------CC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred EeecceEEEEEe--------cccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 666665555443 334444555666779999999999998 78999999999999995
No 54
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=2.8e-37 Score=319.80 Aligned_cols=308 Identities=19% Similarity=0.290 Sum_probs=257.8
Q ss_pred EEEeecCCCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCee---EEEec--Cccce
Q 004214 2 FALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKC---VATLD--KHFSR 76 (768)
Q Consensus 2 ~latg~~dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~---~~~l~--~h~~~ 76 (768)
++|++..++.+.+|+...........+|.+.|++++|+|+++. +++++ ||.|++||+.+++. +..+. +|...
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 99 (337)
T 1gxr_A 23 MQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRH--VYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNY 99 (337)
T ss_dssp EEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSE--EEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSB
T ss_pred EEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcE--EEEcC-CCeEEEEECCCCCceeeeecccccCCCCc
Confidence 4566666666677766665556666689999999999999887 88888 99999999987653 33333 79999
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEe
Q 004214 77 VTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITV 156 (768)
Q Consensus 77 V~~l~fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (768)
|.+++|+|++++|++++.|+.|++||+.+++..
T Consensus 100 v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~----------------------------------------------- 132 (337)
T 1gxr_A 100 IRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPR----------------------------------------------- 132 (337)
T ss_dssp EEEEEECTTSSEEEEEESSSEEEEEECCCC--E-----------------------------------------------
T ss_pred EEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcc-----------------------------------------------
Confidence 999999999999999999999999998654210
Q ss_pred eCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeec
Q 004214 157 GERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLV 236 (768)
Q Consensus 157 ~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~ 236 (768)
T Consensus 133 -------------------------------------------------------------------------------- 132 (337)
T 1gxr_A 133 -------------------------------------------------------------------------------- 132 (337)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCC
Q 004214 237 GYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES 316 (768)
Q Consensus 237 ~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 316 (768)
....+..|...+.++. +.+++.. +++++.||.|++||+.+
T Consensus 133 -------------------------------------~~~~~~~~~~~i~~~~--~~~~~~~-l~~~~~dg~v~~~d~~~ 172 (337)
T 1gxr_A 133 -------------------------------------IKAELTSSAPACYALA--ISPDSKV-CFSCCSDGNIAVWDLHN 172 (337)
T ss_dssp -------------------------------------EEEEEECSSSCEEEEE--ECTTSSE-EEEEETTSCEEEEETTT
T ss_pred -------------------------------------eeeecccCCCceEEEE--ECCCCCE-EEEEeCCCcEEEEeCCC
Confidence 0012334555666665 5565555 88999999999999999
Q ss_pred ceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEE
Q 004214 317 RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVC 396 (768)
Q Consensus 317 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 396 (768)
++.+..+..|...+.+++|+|++. ++++++.||.|++||+.... .. ....+...+.+++|+|++++++
T Consensus 173 ~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~----------~~-~~~~~~~~v~~~~~s~~~~~l~ 240 (337)
T 1gxr_A 173 QTLVRQFQGHTDGASCIDISNDGT-KLWTGGLDNTVRSWDLREGR----------QL-QQHDFTSQIFSLGYCPTGEWLA 240 (337)
T ss_dssp TEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTE----------EE-EEEECSSCEEEEEECTTSSEEE
T ss_pred CceeeeeecccCceEEEEECCCCC-EEEEEecCCcEEEEECCCCc----------eE-eeecCCCceEEEEECCCCCEEE
Confidence 999999999999999999999965 89999999999999997531 22 2235778899999999999999
Q ss_pred EEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCC
Q 004214 397 TGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRG 476 (768)
Q Consensus 397 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~ 476 (768)
+++.|+.|++||+.+++.. .+..|..+|.+++|+|++++|++++.||.|++||+.+++.+.... |...+++++|+|++
T Consensus 241 ~~~~~~~i~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~ 318 (337)
T 1gxr_A 241 VGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISVDD 318 (337)
T ss_dssp EEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECTTS
T ss_pred EEcCCCcEEEEECCCCCeE-EEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEec-CCCcEEEEEECCCC
Confidence 9999999999999988754 577899999999999999999999999999999999998886554 88999999999999
Q ss_pred CEEEEEeCCCcEEEEEC
Q 004214 477 AQIVSCGADGLVKLWTV 493 (768)
Q Consensus 477 ~~l~s~~~dg~i~iwd~ 493 (768)
++|++++.||.|++|++
T Consensus 319 ~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 319 KYIVTGSGDKKATVYEV 335 (337)
T ss_dssp CEEEEEETTSCEEEEEE
T ss_pred CEEEEecCCCeEEEEEE
Confidence 99999999999999996
No 55
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=2.1e-37 Score=328.86 Aligned_cols=298 Identities=19% Similarity=0.254 Sum_probs=262.3
Q ss_pred eEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCce------eeeeeeCCccceEEEeeeeecC---CC--
Q 004214 229 LILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMS------CSYVLAGHSEIVLCLDTCALSS---GK-- 297 (768)
Q Consensus 229 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~------~~~~~~~~~~~v~~l~~~~~~~---~~-- 297 (768)
......+.+|.+.|.+++|++ +++++++.||.|++|++.++. ....+.+|...|.++. +.++ ++
T Consensus 6 ~~~~~~~~~h~~~i~~~~~~~---~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~--~~~~~~~~g~~ 80 (397)
T 1sq9_A 6 IATANAGKAHDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVD--VLQAIERDAFE 80 (397)
T ss_dssp EEEEEESSCSSSCEEEEEECS---SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEE--EEEEEETTTEE
T ss_pred hhhhhhhhhhhcCeEEEEecC---CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEE--EecccccCCcc
Confidence 345567789999999999976 799999999999999999988 7888899999999998 6665 13
Q ss_pred -EEEEEEeCCCeEEEEeCCCceE-----EEeeecc-----cCcEEEEEEe----cCCCcE-EEEEeCCCeEEEEeCCC--
Q 004214 298 -ILIVTGSKDNSVRLWDSESRCC-----VGVGTGH-----MGAVGAVAFS----KKLQNF-LVSGSSDHTIKVWSFDG-- 359 (768)
Q Consensus 298 -~~l~~~~~dg~i~iwd~~~~~~-----~~~~~~~-----~~~v~~~~~~----~~~~~~-l~s~~~dg~i~iwd~~~-- 359 (768)
.+|++++.||.|++||+.++.. ...+..| ...|.+++|+ |++. + +++++.||.|++||+..
T Consensus 81 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~ 159 (397)
T 1sq9_A 81 LCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLS-HRLVATDVKGTTYIWKFHPFA 159 (397)
T ss_dssp EEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----C-EEEEEEETTSCEEEEEEESSS
T ss_pred ccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCc-eEEEEEeCCCcEEEEeCCccc
Confidence 4599999999999999988876 7888888 5999999999 8866 6 99999999999999985
Q ss_pred ----CCCCCccccccceeeEe-------eccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEec---c---C
Q 004214 360 ----LSDDAEQPMNLKAKAVV-------AAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG---H---K 422 (768)
Q Consensus 360 ----~~~~~~~~~~~~~~~~~-------~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~---~ 422 (768)
.... .......+ ..|...|.+++|+|++ ++++++.||.|++||+++++.+..+.. | .
T Consensus 160 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~ 233 (397)
T 1sq9_A 160 DESNSLTL-----NWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNS 233 (397)
T ss_dssp SHHHHTTT-----CCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCC
T ss_pred ccccccee-----eccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccC
Confidence 2211 11111133 4478899999999999 999999999999999999999999998 9 9
Q ss_pred CCeEEEEEccCCCEEEEeeCC---CcEEEEeCCCCceeEEeec-------------CCCcEEEEEEEeCCCEEEEEeCCC
Q 004214 423 RGIWSVEFSPVDQVVITASGD---KTIKIWSISDGSCLKTFEG-------------HTSSVLRASFLTRGAQIVSCGADG 486 (768)
Q Consensus 423 ~~v~~v~~s~~~~~l~t~~~d---~~i~iwd~~~~~~~~~~~~-------------~~~~v~~~~~s~~~~~l~s~~~dg 486 (768)
.+|.+++|+|++++|++++.| +.|++||+.+++++..+.+ |...|.+++|+|++++|++++.||
T Consensus 234 ~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 313 (397)
T 1sq9_A 234 NSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDG 313 (397)
T ss_dssp CCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTS
T ss_pred CccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCC
Confidence 999999999999999999999 9999999999999999998 999999999999999999999999
Q ss_pred cEEEEECCCCeEEEEec------cC---------------CCcEEEEEEcCCC----------CEEEEEeCCCcEEEEEc
Q 004214 487 LVKLWTVRTGECIATYD------KH---------------EDKIWALAVGKKT----------EMFATGGSDALVNLWHD 535 (768)
Q Consensus 487 ~i~iwd~~~~~~~~~~~------~~---------------~~~v~~l~~s~~~----------~~l~s~~~dg~v~vw~~ 535 (768)
.|++||+.+++++..+. .| ...|++++|+|++ ++|++++.||.|++|++
T Consensus 314 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~ 393 (397)
T 1sq9_A 314 KLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFRE 393 (397)
T ss_dssp EEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEE
T ss_pred eEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEc
Confidence 99999999999999998 88 9999999999998 79999999999999998
Q ss_pred CCH
Q 004214 536 STA 538 (768)
Q Consensus 536 ~~~ 538 (768)
.++
T Consensus 394 ~~g 396 (397)
T 1sq9_A 394 AGG 396 (397)
T ss_dssp EC-
T ss_pred CCC
Confidence 875
No 56
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1e-36 Score=330.74 Aligned_cols=324 Identities=23% Similarity=0.350 Sum_probs=264.1
Q ss_pred EEEeecCCCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEE
Q 004214 2 FALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMA 81 (768)
Q Consensus 2 ~latg~~dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~ 81 (768)
+||+|+.||.|++||+.+++.+..+.+|.+.|++++|+|++ .+++|+.||+|++||+.+++++..+.+|.+.|.+++
T Consensus 134 ~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~---~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~ 210 (464)
T 3v7d_B 134 YVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG---ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLD 210 (464)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT---EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred EEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC---EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEE
Confidence 68999999999999999999999999999999999999986 499999999999999999999999999999999999
Q ss_pred Ec--CCCCEEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCC
Q 004214 82 IT--SDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGER 159 (768)
Q Consensus 82 fs--~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (768)
|+ +++++|++++.|+.|++||+.++................
T Consensus 211 ~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~------------------------------------- 253 (464)
T 3v7d_B 211 IVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVF------------------------------------- 253 (464)
T ss_dssp EEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEE-------------------------------------
T ss_pred EecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEe-------------------------------------
Confidence 98 588999999999999999998765433221111000000
Q ss_pred cEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccC
Q 004214 160 GIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYN 239 (768)
Q Consensus 160 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (768)
..|.... .......+|.
T Consensus 254 --------------------------------------~~~~~~~-------------------------~~~~~~~~~~ 270 (464)
T 3v7d_B 254 --------------------------------------HTPEENP-------------------------YFVGVLRGHM 270 (464)
T ss_dssp --------------------------------------SCGGGCT-------------------------TEEEEECCCS
T ss_pred --------------------------------------eccCCCe-------------------------EEEEEccCcc
Confidence 0010000 0112344556
Q ss_pred CceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceE
Q 004214 240 EEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC 319 (768)
Q Consensus 240 ~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 319 (768)
..+.++. +++.++++++.++.|++||+.+++.+..+.+|...|.++. +.+++.. +++|+.||.|++||+.++++
T Consensus 271 ~~v~~~~---~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~~~-l~sg~~dg~i~vwd~~~~~~ 344 (464)
T 3v7d_B 271 ASVRTVS---GHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTI--YDHERKR-CISASMDTTIRIWDLENGEL 344 (464)
T ss_dssp SCEEEEE---EETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE--EETTTTE-EEEEETTSCEEEEETTTTEE
T ss_pred ceEEEEc---CCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEE--EcCCCCE-EEEEeCCCcEEEEECCCCcE
Confidence 6666663 4678999999999999999999999999999999999997 7777776 99999999999999999999
Q ss_pred EEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEe
Q 004214 320 VGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGS 399 (768)
Q Consensus 320 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 399 (768)
+..+.+|...|.++++++ .++++++.||.|++||+.... ......+...+..++|+|+++++++|+
T Consensus 345 ~~~~~~h~~~v~~~~~~~---~~l~s~s~dg~v~vwd~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~l~~~~ 410 (464)
T 3v7d_B 345 MYTLQGHTALVGLLRLSD---KFLVSAAADGSIRGWDANDYS-----------RKFSYHHTNLSAITTFYVSDNILVSGS 410 (464)
T ss_dssp EEEECCCSSCEEEEEECS---SEEEEEETTSEEEEEETTTCC-----------EEEEEECTTCCCEEEEEECSSEEEEEE
T ss_pred EEEEeCCCCcEEEEEEcC---CEEEEEeCCCcEEEEECCCCc-----------eeeeecCCCCccEEEEEeCCCEEEEec
Confidence 999999999999999985 389999999999999997531 122234677788899999999999998
Q ss_pred CCCcEEEEeCCCCceEEE-EeccCCCeEEEEEccCCCEEEEeeCCCcEEEEe
Q 004214 400 QDRTACVWRLPDLVSVVT-FRGHKRGIWSVEFSPVDQVVITASGDKTIKIWS 450 (768)
Q Consensus 400 ~dg~i~i~d~~~~~~~~~-~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd 450 (768)
||.|++||+.+++.+.. +.+|...|++++|+ .+.++++++.||.+.+|-
T Consensus 411 -dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 411 -ENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLEI 460 (464)
T ss_dssp -TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred -CCeEEEEECCCCcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEEE
Confidence 89999999999998875 66789999999998 345566666677655543
No 57
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-36 Score=319.35 Aligned_cols=309 Identities=18% Similarity=0.251 Sum_probs=256.4
Q ss_pred CEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEE
Q 004214 20 GFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVN 99 (768)
Q Consensus 20 ~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~ 99 (768)
......+.+|.+.|++++|+|++++ |++|+.||.|++||+.+++.+..+.+|.+.|.+++|+|++++|++++.||.|+
T Consensus 22 ~~~~~~l~~h~~~v~~~~~s~~~~~--l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~ 99 (369)
T 3zwl_B 22 HMKAIKLTGHERPLTQVKYNKEGDL--LFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIK 99 (369)
T ss_dssp SEEEEEEECCSSCEEEEEECTTSCE--EEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEE
T ss_pred ccccEEEEEeeceEEEEEEcCCCCE--EEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEE
Confidence 3456779999999999999999887 99999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCC-----cEEEEEEcCCceeee
Q 004214 100 LWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGER-----GIVRMWNADSACLYE 174 (768)
Q Consensus 100 vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----g~i~iwd~~~~~~~~ 174 (768)
+||+.+++++..+.....+..++|+|++. .+++++.+ |.|++|++..+....
T Consensus 100 iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-----------------------~l~~~~~~~~~~~g~i~~~d~~~~~~~~ 156 (369)
T 3zwl_B 100 LWDVSNGQCVATWKSPVPVKRVEFSPCGN-----------------------YFLAILDNVMKNPGSINIYEIERDSATH 156 (369)
T ss_dssp EEETTTCCEEEEEECSSCEEEEEECTTSS-----------------------EEEEEECCBTTBCCEEEEEEEEECTTTC
T ss_pred EEECCCCcEEEEeecCCCeEEEEEccCCC-----------------------EEEEecCCccCCCCEEEEEEecCCccce
Confidence 99999999988888777777888877765 56666666 677777654431000
Q ss_pred ecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCE
Q 004214 175 QKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQY 254 (768)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 254 (768)
.
T Consensus 157 -------------------------------------------------------------------------------~ 157 (369)
T 3zwl_B 157 -------------------------------------------------------------------------------E 157 (369)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred -------------------------------------------------------------------------------e
Confidence 0
Q ss_pred EEEEeCCCcEEEEECCCceeeeeeeCCcc--ceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCC-ceEEEeeecccCcEE
Q 004214 255 LAVATNIEQVQVYDLSSMSCSYVLAGHSE--IVLCLDTCALSSGKILIVTGSKDNSVRLWDSES-RCCVGVGTGHMGAVG 331 (768)
Q Consensus 255 l~~~~~~~~i~i~d~~~~~~~~~~~~~~~--~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~ 331 (768)
+ ..........+..|.. .+.++. +.+++.. +++++.||.|++||+.+ +..+..+..|...|.
T Consensus 158 ~------------~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~ 222 (369)
T 3zwl_B 158 L------------TKVSEEPIHKIITHEGLDAATVAG--WSTKGKY-IIAGHKDGKISKYDVSNNYEYVDSIDLHEKSIS 222 (369)
T ss_dssp E------------EEECSSCSEEEECCTTCCCEEEEE--ECGGGCE-EEEEETTSEEEEEETTTTTEEEEEEECCSSCEE
T ss_pred e------------cccccceeeeccCCcCccceeEEE--EcCCCCE-EEEEcCCCEEEEEECCCCcEeEEEEecCCCcee
Confidence 0 0000111223334444 777776 6666665 99999999999999998 788999999999999
Q ss_pred EEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCC---------
Q 004214 332 AVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDR--------- 402 (768)
Q Consensus 332 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg--------- 402 (768)
+++|+|++. +|++++.||.|++||+.... ..... .+...+.+++|+|+++++++++.++
T Consensus 223 ~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~----------~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 290 (369)
T 3zwl_B 223 DMQFSPDLT-YFITSSRDTNSFLVDVSTLQ----------VLKKY-ETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSA 290 (369)
T ss_dssp EEEECTTSS-EEEEEETTSEEEEEETTTCC----------EEEEE-ECSSCEEEEEECSSSSEEEEEECCC---------
T ss_pred EEEECCCCC-EEEEecCCceEEEEECCCCc----------eeeee-cCCCCceeEEecCCCceEEEeecCCCceEEEEec
Confidence 999999966 89999999999999997542 22222 2778899999999999999999988
Q ss_pred -----cEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEE
Q 004214 403 -----TACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKT 459 (768)
Q Consensus 403 -----~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~ 459 (768)
.+++||..+++.+..+.+|...|++++|+|++++|++++.||.|++|++..+.....
T Consensus 291 ~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~ 352 (369)
T 3zwl_B 291 NEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSYFDFK 352 (369)
T ss_dssp ----CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHHHTCC
T ss_pred CCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECccccchhH
Confidence 899999999999999999999999999999999999999999999999987654433
No 58
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-36 Score=316.52 Aligned_cols=304 Identities=19% Similarity=0.249 Sum_probs=271.3
Q ss_pred EEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeE
Q 004214 230 ILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSV 309 (768)
Q Consensus 230 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i 309 (768)
.....+.+|...|.+++|++ ++.++++++.+|.|++||+.+++....+.+|...|.+++ +.+++.. |++++.||.|
T Consensus 23 ~~~~~l~~h~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~--~~~~~~~-l~s~~~dg~i 98 (369)
T 3zwl_B 23 MKAIKLTGHERPLTQVKYNK-EGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSID--VDCFTKY-CVTGSADYSI 98 (369)
T ss_dssp EEEEEEECCSSCEEEEEECT-TSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEE--ECTTSSE-EEEEETTTEE
T ss_pred cccEEEEEeeceEEEEEEcC-CCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEE--EcCCCCE-EEEEeCCCeE
Confidence 34466789999999999986 788999999999999999999999999999999999997 6676665 9999999999
Q ss_pred EEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCC-----CeEEEEeCCCCCCCCccc-cccceeeEeeccCC--
Q 004214 310 RLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSD-----HTIKVWSFDGLSDDAEQP-MNLKAKAVVAAHGK-- 381 (768)
Q Consensus 310 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~-- 381 (768)
++||+.+++.+..+. +...+.+++|+|++. ++++++.+ |.|.+||+.......... ...........|..
T Consensus 99 ~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~-~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (369)
T 3zwl_B 99 KLWDVSNGQCVATWK-SPVPVKRVEFSPCGN-YFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLD 176 (369)
T ss_dssp EEEETTTCCEEEEEE-CSSCEEEEEECTTSS-EEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCC
T ss_pred EEEECCCCcEEEEee-cCCCeEEEEEccCCC-EEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCcc
Confidence 999999999988887 889999999999976 78889888 999999997654322111 11123334455555
Q ss_pred CeEEEEEccCCCEEEEEeCCCcEEEEeCCC-CceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEe
Q 004214 382 DINSLAVAPNDSLVCTGSQDRTACVWRLPD-LVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTF 460 (768)
Q Consensus 382 ~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~ 460 (768)
.+.+++|+|+++++++++.||.|++||+.+ ...+..+..|...|.+++|+|++++|++++.|+.|++||+.+++++..+
T Consensus 177 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~ 256 (369)
T 3zwl_B 177 AATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKY 256 (369)
T ss_dssp CEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred ceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeee
Confidence 899999999999999999999999999998 7888899999999999999999999999999999999999999999998
Q ss_pred ecCCCcEEEEEEEeCCCEEEEEeCCC--------------cEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeC
Q 004214 461 EGHTSSVLRASFLTRGAQIVSCGADG--------------LVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGS 526 (768)
Q Consensus 461 ~~~~~~v~~~~~s~~~~~l~s~~~dg--------------~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~ 526 (768)
. +...+..++|+|+++++++++.++ .+++||..+++++..+.+|...|++++|+|++++|++++.
T Consensus 257 ~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 335 (369)
T 3zwl_B 257 E-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGE 335 (369)
T ss_dssp E-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred c-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcC
Confidence 8 888999999999999999999988 8999999999999999999999999999999999999999
Q ss_pred CCcEEEEEcCCHHH
Q 004214 527 DALVNLWHDSTAAE 540 (768)
Q Consensus 527 dg~v~vw~~~~~~~ 540 (768)
||.|++|++.++..
T Consensus 336 dg~v~iw~~~~~~~ 349 (369)
T 3zwl_B 336 DGFIRLHHFEKSYF 349 (369)
T ss_dssp TSEEEEEEECHHHH
T ss_pred CCeEEEEECccccc
Confidence 99999999987643
No 59
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.6e-37 Score=332.36 Aligned_cols=332 Identities=14% Similarity=0.203 Sum_probs=273.3
Q ss_pred EEEeecCCCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEE
Q 004214 2 FALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMA 81 (768)
Q Consensus 2 ~latg~~dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~ 81 (768)
+||+|+.||.|++||+.++.....+.+| ..+...+|+|+++. |++|+.||.|++||+.+++.+..+.+|.+.|++++
T Consensus 70 ~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~--l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~ 146 (420)
T 3vl1_A 70 HLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRR--FILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLK 146 (420)
T ss_dssp TEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCE--EEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEE
T ss_pred eEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCE--EEEEECCCCEEEEeCCCcceeeecccccCccEEEE
Confidence 5889999999999999988877667766 55666688999887 99999999999999999999999999999999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcE
Q 004214 82 ITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGI 161 (768)
Q Consensus 82 fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 161 (768)
|+|++++|++++.|+.|++||+.+++.+..
T Consensus 147 ~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~-------------------------------------------------- 176 (420)
T 3vl1_A 147 FFPSGEALISSSQDMQLKIWSVKDGSNPRT-------------------------------------------------- 176 (420)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTCCCCEE--------------------------------------------------
T ss_pred ECCCCCEEEEEeCCCeEEEEeCCCCcCceE--------------------------------------------------
Confidence 999999999999999999999987543222
Q ss_pred EEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCc
Q 004214 162 VRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEE 241 (768)
Q Consensus 162 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (768)
+.+|...
T Consensus 177 -------------------------------------------------------------------------~~~h~~~ 183 (420)
T 3vl1_A 177 -------------------------------------------------------------------------LIGHRAT 183 (420)
T ss_dssp -------------------------------------------------------------------------EECCSSC
T ss_pred -------------------------------------------------------------------------EcCCCCc
Confidence 2245667
Q ss_pred eeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeC---CccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCce
Q 004214 242 ILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAG---HSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC 318 (768)
Q Consensus 242 i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~---~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 318 (768)
|.+++|++ ++.++++++.|+.|++||+.+++....+.. |...+.++. +.+.+.. .
T Consensus 184 v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~---------~---------- 241 (420)
T 3vl1_A 184 VTDIAIID-RGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIA--LFVGTDR---------Q---------- 241 (420)
T ss_dssp EEEEEEET-TTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEE--EEECCCS---------S----------
T ss_pred EEEEEEcC-CCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEE--EecCCcc---------e----------
Confidence 88888885 678999999999999999999998888875 556666665 3322221 0
Q ss_pred EEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCC-EEEE
Q 004214 319 CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDS-LVCT 397 (768)
Q Consensus 319 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~ 397 (768)
....+...+.+++|+|++. ++++++.||.|++||+.... ........|...|.+++|+|++. +|++
T Consensus 242 ---~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 308 (420)
T 3vl1_A 242 ---LHEISTSKKNNLEFGTYGK-YVIAGHVSGVITVHNVFSKE---------QTIQLPSKFTCSCNSLTVDGNNANYIYA 308 (420)
T ss_dssp ---CGGGCCCCCCTTCSSCTTE-EEEEEETTSCEEEEETTTCC---------EEEEECCTTSSCEEEEEECSSCTTEEEE
T ss_pred ---eeecccCcccceEEcCCCC-EEEEEcCCCeEEEEECCCCc---------eeEEcccccCCCceeEEEeCCCCCEEEE
Confidence 2344677889999999966 89999999999999997542 12333346888999999999998 9999
Q ss_pred EeCCCcEEEEeCCCCce-EEEEec-cCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCC---------ceeEEeecCCCc
Q 004214 398 GSQDRTACVWRLPDLVS-VVTFRG-HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG---------SCLKTFEGHTSS 466 (768)
Q Consensus 398 ~~~dg~i~i~d~~~~~~-~~~~~~-~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~---------~~~~~~~~~~~~ 466 (768)
|+.||.|++||+++++. +..+.+ |...|+++.+ |++++|++++.|+.|++||+... .....+.+|...
T Consensus 309 g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (420)
T 3vl1_A 309 GYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDA 387 (420)
T ss_dssp EETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCC
T ss_pred EeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcc
Confidence 99999999999998754 677776 6677888855 57889999999999999998773 233456678999
Q ss_pred EEEEEEEeCCC---EEEEEeCCCcEEEEECCC
Q 004214 467 VLRASFLTRGA---QIVSCGADGLVKLWTVRT 495 (768)
Q Consensus 467 v~~~~~s~~~~---~l~s~~~dg~i~iwd~~~ 495 (768)
|.+++|+|++. .+++++.+|.+.+|++.+
T Consensus 388 v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 388 VSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp CCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred eEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 99999999999 888888999999999864
No 60
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=7.1e-37 Score=348.58 Aligned_cols=294 Identities=21% Similarity=0.321 Sum_probs=255.7
Q ss_pred EEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCc-----eeeeeeeCCccceEEEeeeeecCCCEEEEEEe
Q 004214 230 ILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSM-----SCSYVLAGHSEIVLCLDTCALSSGKILIVTGS 304 (768)
Q Consensus 230 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~-----~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~ 304 (768)
.....+.+|.+.|.+++|++++..+|++|+.|+.|++|++.+. .....+.+|...|.+++ +.+++.. |++|+
T Consensus 373 ~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~--~s~~g~~-l~sgs 449 (694)
T 3dm0_A 373 VLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVV--LSSDGQF-ALSGS 449 (694)
T ss_dssp EEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEE--ECTTSSE-EEEEE
T ss_pred chhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEE--ECCCCCE-EEEEe
Confidence 4445678999999999999888899999999999999998763 34567899999999997 7777765 99999
Q ss_pred CCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeE
Q 004214 305 KDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDIN 384 (768)
Q Consensus 305 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 384 (768)
.||.|++||+.++.....+.+|...|.+++|+|++. ++++++.|++|++||+.... ..........|...|.
T Consensus 450 ~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~s~D~~i~iwd~~~~~-------~~~~~~~~~~h~~~v~ 521 (694)
T 3dm0_A 450 WDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNR-QIVSASRDRTIKLWNTLGEC-------KYTISEGGEGHRDWVS 521 (694)
T ss_dssp TTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSS-CEEEEETTSCEEEECTTSCE-------EEEECSSTTSCSSCEE
T ss_pred CCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCC-EEEEEeCCCEEEEEECCCCc-------ceeeccCCCCCCCcEE
Confidence 999999999999999999999999999999999976 69999999999999975321 0001111246888999
Q ss_pred EEEEccCC--CEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeec
Q 004214 385 SLAVAPND--SLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEG 462 (768)
Q Consensus 385 ~~~~s~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~ 462 (768)
+++|+|++ ..+++|+.|++|++||+.+++....+.+|...|++++|+|++++|++|+.||+|++||+.+++++..+.
T Consensus 522 ~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~- 600 (694)
T 3dm0_A 522 CVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE- 600 (694)
T ss_dssp EEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCB-
T ss_pred EEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEec-
Confidence 99999986 689999999999999999999999999999999999999999999999999999999999999988887
Q ss_pred CCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCC-------------------CcEEEEEEcCCCCEEEE
Q 004214 463 HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHE-------------------DKIWALAVGKKTEMFAT 523 (768)
Q Consensus 463 ~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-------------------~~v~~l~~s~~~~~l~s 523 (768)
+...|.+++|+|++.+|++++ ++.|++||+.+++++..+..+. ..+++++|+|+|++|++
T Consensus 601 ~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~s 679 (694)
T 3dm0_A 601 ANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFS 679 (694)
T ss_dssp CSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEE
T ss_pred CCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEE
Confidence 456899999999998888776 4569999999999888775332 13789999999999999
Q ss_pred EeCCCcEEEEEcC
Q 004214 524 GGSDALVNLWHDS 536 (768)
Q Consensus 524 ~~~dg~v~vw~~~ 536 (768)
|+.||.|++|++.
T Consensus 680 gs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 680 GYTDGVIRVWGIG 692 (694)
T ss_dssp EETTSEEEEEEC-
T ss_pred EcCCCeEEEEecc
Confidence 9999999999975
No 61
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=4.6e-36 Score=323.36 Aligned_cols=300 Identities=26% Similarity=0.459 Sum_probs=264.1
Q ss_pred EEEeecCCCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEE
Q 004214 2 FALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMA 81 (768)
Q Consensus 2 ~latg~~dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~ 81 (768)
+||+|+.||.|++||+.+++++..+.+|.+.|++++|++ .. +++|+.||+|++||+.+++++..+.+|...|.+++
T Consensus 131 ~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~--~~--l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~ 206 (445)
T 2ovr_B 131 RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD--NI--IISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMH 206 (445)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEET--TE--EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred EEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEecC--CE--EEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEE
Confidence 689999999999999999999999999999999999984 44 99999999999999999999999999999999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcE
Q 004214 82 ITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGI 161 (768)
Q Consensus 82 fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 161 (768)
|+ +++|++++.||.|++||+.+++++..+
T Consensus 207 ~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~------------------------------------------------- 235 (445)
T 2ovr_B 207 LH--EKRVVSGSRDATLRVWDIETGQCLHVL------------------------------------------------- 235 (445)
T ss_dssp EE--TTEEEEEETTSEEEEEESSSCCEEEEE-------------------------------------------------
T ss_pred ec--CCEEEEEeCCCEEEEEECCCCcEEEEE-------------------------------------------------
Confidence 96 678999999999999999876543222
Q ss_pred EEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCc
Q 004214 162 VRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEE 241 (768)
Q Consensus 162 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (768)
.+|...
T Consensus 236 --------------------------------------------------------------------------~~~~~~ 241 (445)
T 2ovr_B 236 --------------------------------------------------------------------------MGHVAA 241 (445)
T ss_dssp --------------------------------------------------------------------------ECCSSC
T ss_pred --------------------------------------------------------------------------cCCccc
Confidence 234456
Q ss_pred eeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEE
Q 004214 242 ILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVG 321 (768)
Q Consensus 242 i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 321 (768)
+.++.| ++.++++++.+|.|++||+.+++....+.+|...+.++. + ++.. +++|+.||.|++||+.+++.+.
T Consensus 242 v~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~--~--~~~~-l~~~~~d~~i~i~d~~~~~~~~ 313 (445)
T 2ovr_B 242 VRCVQY---DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQ--F--DGIH-VVSGSLDTSIRVWDVETGNCIH 313 (445)
T ss_dssp EEEEEE---CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEE--E--CSSE-EEEEETTSCEEEEETTTCCEEE
T ss_pred EEEEEE---CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEE--E--CCCE-EEEEeCCCeEEEEECCCCCEEE
Confidence 677776 567899999999999999999999999999999999997 3 4554 9999999999999999999999
Q ss_pred eeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeec---cCCCeEEEEEccCCCEEEEE
Q 004214 322 VGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAA---HGKDINSLAVAPNDSLVCTG 398 (768)
Q Consensus 322 ~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~s~~~~~l~~~ 398 (768)
.+.+|...+.++.++++ ++++++.||.|++||+..+. ....+.. |...|.+++|+ ++++++|
T Consensus 314 ~~~~~~~~v~~~~~~~~---~l~~~~~dg~i~vwd~~~~~----------~~~~~~~~~~~~~~v~~~~~~--~~~l~s~ 378 (445)
T 2ovr_B 314 TLTGHQSLTSGMELKDN---ILVSGNADSTVKIWDIKTGQ----------CLQTLQGPNKHQSAVTCLQFN--KNFVITS 378 (445)
T ss_dssp EECCCCSCEEEEEEETT---EEEEEETTSCEEEEETTTCC----------EEEEECSTTSCSSCEEEEEEC--SSEEEEE
T ss_pred EEcCCcccEEEEEEeCC---EEEEEeCCCeEEEEECCCCc----------EEEEEccCCCCCCCEEEEEEC--CCEEEEE
Confidence 99999999999988643 89999999999999997432 3333443 88899999996 5799999
Q ss_pred eCCCcEEEEeCCCCceEEEE-----eccCCCeEEEEEccCCCEEEEeeCCCc----EEEEeCCC
Q 004214 399 SQDRTACVWRLPDLVSVVTF-----RGHKRGIWSVEFSPVDQVVITASGDKT----IKIWSISD 453 (768)
Q Consensus 399 ~~dg~i~i~d~~~~~~~~~~-----~~~~~~v~~v~~s~~~~~l~t~~~d~~----i~iwd~~~ 453 (768)
+.||.|++||+.+++.+..+ .+|...|++++|+|++.++++|+.||+ |.+||+..
T Consensus 379 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 379 SDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp ETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred eCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 99999999999999998888 468889999999999999999999998 99999864
No 62
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=7.6e-38 Score=333.54 Aligned_cols=371 Identities=17% Similarity=0.248 Sum_probs=266.7
Q ss_pred CCCcEEEEECCCCeeEEEecCccceeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCc
Q 004214 52 DDATVRVWDLLAKKCVATLDKHFSRVTSMAITS-DGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAF 130 (768)
Q Consensus 52 ~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~-d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 130 (768)
.++.+++|++..++....+.+|.+.|++++|+| ++++|++++.||.|++||+.++.....+.....
T Consensus 21 ~~~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~------------- 87 (408)
T 4a11_B 21 AESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAV------------- 87 (408)
T ss_dssp HHHHHHHHTEEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEE-------------
T ss_pred ccCcceeeccccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEecccc-------------
Confidence 345688999988889999999999999999999 999999999999999999987654333211000
Q ss_pred cccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEe
Q 004214 131 DSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTA 210 (768)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 210 (768)
T Consensus 88 -------------------------------------------------------------------------------- 87 (408)
T 4a11_B 88 -------------------------------------------------------------------------------- 87 (408)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEee
Q 004214 211 DQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDT 290 (768)
Q Consensus 211 dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~ 290 (768)
.........+|...|.+++|++.++.++++++.++.|++||+.+++....+. +...+.++.+
T Consensus 88 -----------------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~ 149 (408)
T 4a11_B 88 -----------------CSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHM 149 (408)
T ss_dssp -----------------EEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEE
T ss_pred -----------------ccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEe
Confidence 0000011235778899999998788999999999999999999999887776 6777888874
Q ss_pred eeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCcc----
Q 004214 291 CALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQ---- 366 (768)
Q Consensus 291 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---- 366 (768)
.....+..++++|+.||.|++||+.++..+..+.+|...|.+++|+|++..++++++.||.|++||++........
T Consensus 150 ~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~ 229 (408)
T 4a11_B 150 SPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQH 229 (408)
T ss_dssp CSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTT
T ss_pred ecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccccccc
Confidence 4444444569999999999999999999999999999999999999998878999999999999999865311100
Q ss_pred --ccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccC-----CCeEEEEEccCCCEEEE
Q 004214 367 --PMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHK-----RGIWSVEFSPVDQVVIT 439 (768)
Q Consensus 367 --~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~v~~v~~s~~~~~l~t 439 (768)
............|...|.+++|+|++++|++++.||.|++||+.+++....+.++. ..+........+..+++
T Consensus 230 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (408)
T 4a11_B 230 NGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVF 309 (408)
T ss_dssp TTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEE
T ss_pred ccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEE
Confidence 01111222235688999999999999999999999999999999887655443321 12222222334556777
Q ss_pred eeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcC-CC
Q 004214 440 ASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGK-KT 518 (768)
Q Consensus 440 ~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~-~~ 518 (768)
++.|+.|++||+.+++++..+.+|...|++++|+|++++|++++.||.|++||+.+++++.....+... ..+.+ ..
T Consensus 310 ~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~---~~~~~~~~ 386 (408)
T 4a11_B 310 VPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTTK---SQLNPAFE 386 (408)
T ss_dssp EEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC------------------------
T ss_pred EecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceEec---cccccccc
Confidence 778899999999999999999999999999999999999999999999999999999888766533322 22333 34
Q ss_pred CEEEEEeCCCcEEEEEcC
Q 004214 519 EMFATGGSDALVNLWHDS 536 (768)
Q Consensus 519 ~~l~s~~~dg~v~vw~~~ 536 (768)
..+.+.+.++.+++|+..
T Consensus 387 ~~~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 387 DAWSSSDEEGGTSAWSHP 404 (408)
T ss_dssp ------------------
T ss_pred eeecccCccCceeecCCc
Confidence 456677889999999754
No 63
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=4.2e-37 Score=324.62 Aligned_cols=302 Identities=16% Similarity=0.208 Sum_probs=247.0
Q ss_pred EEECCCCEEEEEEEcCCCcEEEEEEeeCC-CccEEEEEeCCCcEEEEECCCCeeEEEec--CccceeEEEEEcC-CCCEE
Q 004214 14 VWDVDGGFCTHYFKGHKGVVSSILFHPDT-DKSLLFSGSDDATVRVWDLLAKKCVATLD--KHFSRVTSMAITS-DGSTL 89 (768)
Q Consensus 14 vwd~~~~~~~~~l~gh~~~V~~l~~spd~-~~~~l~sg~~dg~I~iWd~~~~~~~~~l~--~h~~~V~~l~fs~-d~~~L 89 (768)
+|+..+......+.+|.+.|++++|+|++ +. |++|+.||.|+|||+.+++....+. +|.+.|.+++|+| ++++|
T Consensus 57 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 134 (383)
T 3ei3_B 57 IRSLKSYKLHRTASPFDRRVTSLEWHPTHPTT--VAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQL 134 (383)
T ss_dssp HHHHTTCEEEEEECCCSSCEEEEEECSSCTTE--EEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEE
T ss_pred cccccccceEEeccCCCCCEEEEEECCCCCCE--EEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEE
Confidence 34556778888999999999999999998 65 9999999999999999888877775 6999999999999 78999
Q ss_pred EEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCC
Q 004214 90 ISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADS 169 (768)
Q Consensus 90 ~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~ 169 (768)
++++.|+.|++||+.+.. ...+.
T Consensus 135 ~s~~~d~~i~iwd~~~~~-~~~~~-------------------------------------------------------- 157 (383)
T 3ei3_B 135 FVSSIRGATTLRDFSGSV-IQVFA-------------------------------------------------------- 157 (383)
T ss_dssp EEEETTTEEEEEETTSCE-EEEEE--------------------------------------------------------
T ss_pred EEEeCCCEEEEEECCCCc-eEEEe--------------------------------------------------------
Confidence 999999999999986421 10000
Q ss_pred ceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEec
Q 004214 170 ACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLG 249 (768)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 249 (768)
T Consensus 158 -------------------------------------------------------------------------------- 157 (383)
T 3ei3_B 158 -------------------------------------------------------------------------------- 157 (383)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCc
Q 004214 250 EEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGA 329 (768)
Q Consensus 250 ~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 329 (768)
....|...|.+++ +.+++.. +++|+.||.|++||+ +++.+..+.+|...
T Consensus 158 ---------------------------~~~~~~~~v~~~~--~~~~~~~-l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~ 206 (383)
T 3ei3_B 158 ---------------------------KTDSWDYWYCCVD--VSVSRQM-LATGDSTGRLLLLGL-DGHEIFKEKLHKAK 206 (383)
T ss_dssp ---------------------------CCCCSSCCEEEEE--EETTTTE-EEEEETTSEEEEEET-TSCEEEEEECSSSC
T ss_pred ---------------------------ccCCCCCCeEEEE--ECCCCCE-EEEECCCCCEEEEEC-CCCEEEEeccCCCc
Confidence 0112345566665 5566665 899999999999998 56778888899999
Q ss_pred EEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEcc-CCCEEEEEeCCCcEEEEe
Q 004214 330 VGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQDRTACVWR 408 (768)
Q Consensus 330 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d 408 (768)
|.+++|+|+++.++++++.|+.|++||+...... ...... ..|...|.+++|+| ++++|++++.|+.|++||
T Consensus 207 v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~------~~~~~~-~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd 279 (383)
T 3ei3_B 207 VTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDK------NSYIAE-MPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYS 279 (383)
T ss_dssp EEEEEECSSCTTEEEEEETTSEEEEEEGGGCCST------TCEEEE-EECSSCEEEEEECTTTSCEEEEEESSSEEEEEE
T ss_pred EEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcc------cceEEE-ecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEE
Confidence 9999999998778999999999999999853211 112222 36899999999999 999999999999999999
Q ss_pred CCCCceEEEEeccC-----------------CCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeec--CCCcEEE
Q 004214 409 LPDLVSVVTFRGHK-----------------RGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEG--HTSSVLR 469 (768)
Q Consensus 409 ~~~~~~~~~~~~~~-----------------~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~--~~~~v~~ 469 (768)
+.+++....+.+|. ..+..++|+|++++ +++.|+.|++||+.+++++..+.+ |...+..
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~ 357 (383)
T 3ei3_B 280 SYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISL 357 (383)
T ss_dssp TTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCE
T ss_pred CCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEE
Confidence 99988777776553 33445667777766 778999999999999999999987 4577888
Q ss_pred EEEEeCCCEEEEEeCCCcEEEEECCC
Q 004214 470 ASFLTRGAQIVSCGADGLVKLWTVRT 495 (768)
Q Consensus 470 ~~~s~~~~~l~s~~~dg~i~iwd~~~ 495 (768)
++|+|++++|++|+ ||.|++||+++
T Consensus 358 ~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 358 NKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp EEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred EEEecCccEEEEec-CCcEEEEecCC
Confidence 89999999999997 99999999864
No 64
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=8.1e-38 Score=333.33 Aligned_cols=351 Identities=19% Similarity=0.241 Sum_probs=251.8
Q ss_pred CCCcEEEEECCCCEEEEEEEcCCCcEEEEEEee-CCCccEEEEEeCCCcEEEEECCCCeeEEEec-------------Cc
Q 004214 8 ADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHP-DTDKSLLFSGSDDATVRVWDLLAKKCVATLD-------------KH 73 (768)
Q Consensus 8 ~dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~sp-d~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~-------------~h 73 (768)
.++.+++|+...+.....+.+|.+.|++++|+| ++++ |++|+.||.|++||+.+++....+. +|
T Consensus 21 ~~~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~--l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (408)
T 4a11_B 21 AESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRY--MLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVH 98 (408)
T ss_dssp HHHHHHHHTEEECTTEEECCCCSSCEEEEEECTTTCCE--EEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCC
T ss_pred ccCcceeeccccCcceeeeeccCCcEEEEEEecCCCCE--EEEEcCCCeEEEEECCCCcccceEeccccccccccccccC
Confidence 355678898888888889999999999999999 8887 9999999999999999876654443 59
Q ss_pred cceeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceE
Q 004214 74 FSRVTSMAITS-DGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIH 152 (768)
Q Consensus 74 ~~~V~~l~fs~-d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (768)
...|.+++|+| ++.+|++++.||.|++||+.+++....+.....
T Consensus 99 ~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~----------------------------------- 143 (408)
T 4a11_B 99 RYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEET----------------------------------- 143 (408)
T ss_dssp SSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSC-----------------------------------
T ss_pred CCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCc-----------------------------------
Confidence 99999999999 788999999999999999998776555433222
Q ss_pred EEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEE
Q 004214 153 FITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILS 232 (768)
Q Consensus 153 ~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~ 232 (768)
T Consensus 144 -------------------------------------------------------------------------------- 143 (408)
T 4a11_B 144 -------------------------------------------------------------------------------- 143 (408)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeecccCCceeEEEEec--CCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEE
Q 004214 233 KRLVGYNEEILDLKFLG--EEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVR 310 (768)
Q Consensus 233 ~~~~~~~~~i~~~~~~~--~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~ 310 (768)
+.++.+.+ +++.++++++.++.|++||+.++.....+.+|...|.++. +.+++..++++|+.||.|+
T Consensus 144 ---------~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~--~~~~~~~ll~~~~~dg~i~ 212 (408)
T 4a11_B 144 ---------VYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVS--WSPRYDYILATASADSRVK 212 (408)
T ss_dssp ---------EEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEE--ECSSCTTEEEEEETTSCEE
T ss_pred ---------eeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEE--ECCCCCcEEEEEcCCCcEE
Confidence 23333332 2455889999999999999999999999999999999998 7788876799999999999
Q ss_pred EEeCCCce-EEEee---------------ecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceee
Q 004214 311 LWDSESRC-CVGVG---------------TGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKA 374 (768)
Q Consensus 311 iwd~~~~~-~~~~~---------------~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 374 (768)
+||+.++. .+..+ ..|...|.+++|+|++. ++++++.||.|++||+........... .
T Consensus 213 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~-----~ 286 (408)
T 4a11_B 213 LWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGL-HLLTVGTDNRMRLWNSSNGENTLVNYG-----K 286 (408)
T ss_dssp EEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCBCCCCCC-----C
T ss_pred EEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCC-EEEEecCCCeEEEEECCCCccceeccc-----c
Confidence 99998764 33333 57889999999999966 899999999999999986542211100 0
Q ss_pred EeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCC
Q 004214 375 VVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG 454 (768)
Q Consensus 375 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~ 454 (768)
........+........+..+++++.++.|++||+.+++.+..+.+|...|++++|+|++++|++++.||.|++||+.++
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 366 (408)
T 4a11_B 287 VCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLY 366 (408)
T ss_dssp CCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC-
T ss_pred ccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCC
Confidence 00111122222233344566777788999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEeecCCCcEEEEEEEe-CCCEEEEEeCCCcEEEEECCC
Q 004214 455 SCLKTFEGHTSSVLRASFLT-RGAQIVSCGADGLVKLWTVRT 495 (768)
Q Consensus 455 ~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~ 495 (768)
+++.....+... ..+.+ ....+.+++.++.+++|+...
T Consensus 367 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~W~~~~ 405 (408)
T 4a11_B 367 EPVPDDDETTTK---SQLNPAFEDAWSSSDEEGGTSAWSHPQ 405 (408)
T ss_dssp ------------------------------------------
T ss_pred CccCCCCceEec---cccccccceeecccCccCceeecCCcc
Confidence 887765533322 23333 333456677789999998654
No 65
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=3.7e-37 Score=326.91 Aligned_cols=297 Identities=13% Similarity=0.143 Sum_probs=250.7
Q ss_pred EEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCe------eEEEecCccceeEEEEEcCC----C---CE
Q 004214 22 CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK------CVATLDKHFSRVTSMAITSD----G---ST 88 (768)
Q Consensus 22 ~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~------~~~~l~~h~~~V~~l~fs~d----~---~~ 88 (768)
....+.+|.+.|++++|+| +. |++|+.||.|++||+.+++ .+..+.+|...|++++|+|+ + ++
T Consensus 8 ~~~~~~~h~~~i~~~~~~~--~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~ 83 (397)
T 1sq9_A 8 TANAGKAHDADIFSVSACN--SF--TVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCL 83 (397)
T ss_dssp EEEESSCSSSCEEEEEECS--SE--EEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEE
T ss_pred hhhhhhhhhcCeEEEEecC--Ce--EEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccE
Confidence 3567789999999999998 44 9999999999999999888 78889999999999999999 9 99
Q ss_pred EEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcC
Q 004214 89 LISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNAD 168 (768)
Q Consensus 89 L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~ 168 (768)
|++++.||.|++||+.+++....
T Consensus 84 l~s~~~dg~i~iw~~~~~~~~~~--------------------------------------------------------- 106 (397)
T 1sq9_A 84 VATTSFSGDLLFYRITREDETKK--------------------------------------------------------- 106 (397)
T ss_dssp EEEEETTSCEEEEEEEECTTTCC---------------------------------------------------------
T ss_pred EEEEcCCCCEEEEEccCCccccc---------------------------------------------------------
Confidence 99999999999999765321000
Q ss_pred CceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEe
Q 004214 169 SACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFL 248 (768)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 248 (768)
T Consensus 107 -------------------------------------------------------------------------------- 106 (397)
T 1sq9_A 107 -------------------------------------------------------------------------------- 106 (397)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCceeeeeeeCC-----ccceEEEeeeee----cCCCEEEEEEeCCCeEEEEeCCC---
Q 004214 249 GEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGH-----SEIVLCLDTCAL----SSGKILIVTGSKDNSVRLWDSES--- 316 (768)
Q Consensus 249 ~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~-----~~~v~~l~~~~~----~~~~~~l~~~~~dg~i~iwd~~~--- 316 (768)
.....+..| ...|.++. +. +++..+|++++.||.|++||+.+
T Consensus 107 ------------------------~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 160 (397)
T 1sq9_A 107 ------------------------VIFEKLDLLDSDMKKHSFWALK--WGASNDRLLSHRLVATDVKGTTYIWKFHPFAD 160 (397)
T ss_dssp ------------------------EEEEEECCSCTTGGGSCEEEEE--EECCC----CEEEEEEETTSCEEEEEEESSSS
T ss_pred ------------------------ccceeecccccccCCCcEEEEE--EeeccCCCCceEEEEEeCCCcEEEEeCCcccc
Confidence 000122223 35666665 44 44443389999999999999988
Q ss_pred ---ceEEE-----ee-------ecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeec---
Q 004214 317 ---RCCVG-----VG-------TGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAA--- 378 (768)
Q Consensus 317 ---~~~~~-----~~-------~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~--- 378 (768)
+..+. .+ ..|...|.+++|+|++ ++++++.||.|++||+... .....+..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~~----------~~~~~~~~~~~ 228 (397)
T 1sq9_A 161 ESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTL----------RPLYNFESQHS 228 (397)
T ss_dssp HHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTT----------EEEEEEECCC-
T ss_pred ccccceeeccCcceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEEEECCCC----------ceeEEEecccc
Confidence 65554 55 4488999999999997 8999999999999999742 34555566
Q ss_pred c---CCCeEEEEEccCCCEEEEEeCC---CcEEEEeCCCCceEEEEec-------------cCCCeEEEEEccCCCEEEE
Q 004214 379 H---GKDINSLAVAPNDSLVCTGSQD---RTACVWRLPDLVSVVTFRG-------------HKRGIWSVEFSPVDQVVIT 439 (768)
Q Consensus 379 ~---~~~i~~~~~s~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~-------------~~~~v~~v~~s~~~~~l~t 439 (768)
| ...|.+++|+|++++|++++.| |.|++||+.+++.+..+.+ |...|.+++|+|++++|++
T Consensus 229 h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 308 (397)
T 1sq9_A 229 MINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCS 308 (397)
T ss_dssp --CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEE
T ss_pred ccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEE
Confidence 8 8999999999999999999999 9999999999999999998 9999999999999999999
Q ss_pred eeCCCcEEEEeCCCCceeEEee------cC---------------CCcEEEEEEEeCC----------CEEEEEeCCCcE
Q 004214 440 ASGDKTIKIWSISDGSCLKTFE------GH---------------TSSVLRASFLTRG----------AQIVSCGADGLV 488 (768)
Q Consensus 440 ~~~d~~i~iwd~~~~~~~~~~~------~~---------------~~~v~~~~~s~~~----------~~l~s~~~dg~i 488 (768)
++.||.|++||+.+++++..+. +| ...|++++|+|+| ++|++++.||.|
T Consensus 309 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i 388 (397)
T 1sq9_A 309 AGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSI 388 (397)
T ss_dssp EETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEE
T ss_pred EeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcE
Confidence 9999999999999999999999 88 9999999999998 799999999999
Q ss_pred EEEECCCCe
Q 004214 489 KLWTVRTGE 497 (768)
Q Consensus 489 ~iwd~~~~~ 497 (768)
++|++.+|+
T Consensus 389 ~iw~~~~g~ 397 (397)
T 1sq9_A 389 RWFREAGGK 397 (397)
T ss_dssp EEEEEEC--
T ss_pred EEEEcCCCC
Confidence 999998764
No 66
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=3.8e-36 Score=342.59 Aligned_cols=293 Identities=25% Similarity=0.444 Sum_probs=245.0
Q ss_pred EEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCC-----CeeEEEecCccceeEEEEEcCCCCEEEEEeCC
Q 004214 21 FCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLA-----KKCVATLDKHFSRVTSMAITSDGSTLISAGRD 95 (768)
Q Consensus 21 ~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~-----~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~d 95 (768)
.....+++|.+.|++|+|+|++. .+|+||+.|++|++||+.+ +.....+.+|...|.+++|+|++++|+|++.|
T Consensus 373 ~~~~~l~~H~~~V~~v~~~~~~~-~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~D 451 (694)
T 3dm0_A 373 VLKGTMRAHTDMVTAIATPIDNA-DIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWD 451 (694)
T ss_dssp EEEEEEECCSSCEEEEECCTTCC-SEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred chhhhcccCCceeEEEEecCCCC-CEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCC
Confidence 34567899999999999999753 3599999999999999975 34567899999999999999999999999999
Q ss_pred CeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeee
Q 004214 96 KVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQ 175 (768)
Q Consensus 96 g~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~ 175 (768)
+.|++||+.++++.
T Consensus 452 g~v~vwd~~~~~~~------------------------------------------------------------------ 465 (694)
T 3dm0_A 452 GELRLWDLAAGVST------------------------------------------------------------------ 465 (694)
T ss_dssp SEEEEEETTTTEEE------------------------------------------------------------------
T ss_pred CcEEEEECCCCcce------------------------------------------------------------------
Confidence 99999998764321
Q ss_pred cCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEE
Q 004214 176 KSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYL 255 (768)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 255 (768)
T Consensus 466 -------------------------------------------------------------------------------- 465 (694)
T 3dm0_A 466 -------------------------------------------------------------------------------- 465 (694)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEee---ecccCcEEE
Q 004214 256 AVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVG---TGHMGAVGA 332 (768)
Q Consensus 256 ~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~ 332 (768)
..+.+|...|.+++ +.+++.. |++|+.|++|++||.......... .+|...|.+
T Consensus 466 --------------------~~~~~h~~~v~~~~--~s~~~~~-l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~ 522 (694)
T 3dm0_A 466 --------------------RRFVGHTKDVLSVA--FSLDNRQ-IVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSC 522 (694)
T ss_dssp --------------------EEEECCSSCEEEEE--ECTTSSC-EEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEE
T ss_pred --------------------eEEeCCCCCEEEEE--EeCCCCE-EEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEE
Confidence 13345667777776 6666665 999999999999998766544432 468899999
Q ss_pred EEEecCCC-cEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004214 333 VAFSKKLQ-NFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPD 411 (768)
Q Consensus 333 ~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~ 411 (768)
++|+|++. ..+++++.|++|++||+... .....+.+|...|++++|+|++++|++|+.||.|++||+.+
T Consensus 523 ~~~~~~~~~~~l~s~s~d~~v~vwd~~~~----------~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~ 592 (694)
T 3dm0_A 523 VRFSPNTLQPTIVSASWDKTVKVWNLSNC----------KLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAE 592 (694)
T ss_dssp EEECSCSSSCEEEEEETTSCEEEEETTTC----------CEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTT
T ss_pred EEEeCCCCcceEEEEeCCCeEEEEECCCC----------cEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC
Confidence 99999863 48999999999999999743 35566788999999999999999999999999999999999
Q ss_pred CceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCC-------------------CcEEEEEE
Q 004214 412 LVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHT-------------------SSVLRASF 472 (768)
Q Consensus 412 ~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~-------------------~~v~~~~~ 472 (768)
++.+..+. +...|.+++|+|++.++++++. +.|++||+.++.++..+..+. ..+++++|
T Consensus 593 ~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 670 (694)
T 3dm0_A 593 GKKLYSLE-ANSVIHALCFSPNRYWLCAATE-HGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNW 670 (694)
T ss_dssp TEEEECCB-CSSCEEEEEECSSSSEEEEEET-TEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEE
T ss_pred CceEEEec-CCCcEEEEEEcCCCcEEEEEcC-CCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEE
Confidence 99888776 4568999999999998887765 669999999999888775332 23789999
Q ss_pred EeCCCEEEEEeCCCcEEEEECCC
Q 004214 473 LTRGAQIVSCGADGLVKLWTVRT 495 (768)
Q Consensus 473 s~~~~~l~s~~~dg~i~iwd~~~ 495 (768)
+|+|++|++|+.||.|++|++..
T Consensus 671 spdg~~l~sgs~Dg~i~iW~i~~ 693 (694)
T 3dm0_A 671 SADGSTLFSGYTDGVIRVWGIGR 693 (694)
T ss_dssp CTTSSEEEEEETTSEEEEEEC--
T ss_pred cCCCCEEEEEcCCCeEEEEeccC
Confidence 99999999999999999999853
No 67
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5e-38 Score=339.95 Aligned_cols=313 Identities=12% Similarity=0.154 Sum_probs=229.4
Q ss_pred EEEeecCCCcEEEEECCCCEE----EEEEEcCCCcEEEEEEeeCC----CccEEEEEeCCCcEEEEECCCCee-------
Q 004214 2 FALLEGADRKVLVWDVDGGFC----THYFKGHKGVVSSILFHPDT----DKSLLFSGSDDATVRVWDLLAKKC------- 66 (768)
Q Consensus 2 ~latg~~dg~i~vwd~~~~~~----~~~l~gh~~~V~~l~~spd~----~~~~l~sg~~dg~I~iWd~~~~~~------- 66 (768)
++|+|+.|++|+|||+.++++ ...+.+|.+.|.+++|+|++ ...+||+|+.||+|+|||+.++..
T Consensus 175 ~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~ 254 (524)
T 2j04_B 175 MFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKM 254 (524)
T ss_dssp -------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEEC
T ss_pred hhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccccccee
Confidence 367788999999999987753 24577899999999999972 234599999999999999976642
Q ss_pred ----EEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhh
Q 004214 67 ----VATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTI 142 (768)
Q Consensus 67 ----~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 142 (768)
...+.+|...|++++|+|++ .|++|+.||+|++||+.++..
T Consensus 255 ~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~---------------------------------- 299 (524)
T 2j04_B 255 CEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEV---------------------------------- 299 (524)
T ss_dssp CCSCSEEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSS----------------------------------
T ss_pred ecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCC----------------------------------
Confidence 34788899999999999864 899999999999999864310
Q ss_pred hcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccC
Q 004214 143 KKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEV 222 (768)
Q Consensus 143 ~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~ 222 (768)
T Consensus 300 -------------------------------------------------------------------------------- 299 (524)
T 2j04_B 300 -------------------------------------------------------------------------------- 299 (524)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEE
Q 004214 223 PEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVT 302 (768)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~ 302 (768)
....+.+|...|.++++.+.+++..+|++
T Consensus 300 ---------------------------------------------------~~~~~~~H~~~V~sv~~~~s~~g~~~laS 328 (524)
T 2j04_B 300 ---------------------------------------------------PSFYDQVHDSYILSVSTAYSDFEDTVVST 328 (524)
T ss_dssp ---------------------------------------------------CSEEEECSSSCEEEEEEECCTTSCCEEEE
T ss_pred ---------------------------------------------------ceEEeecccccEEEEEEEcCCCCCeEEEE
Confidence 00134457777777743244444256999
Q ss_pred EeCCCeEEEEeCCCceEEEeeecccC--cEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccC
Q 004214 303 GSKDNSVRLWDSESRCCVGVGTGHMG--AVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHG 380 (768)
Q Consensus 303 ~~~dg~i~iwd~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 380 (768)
|+.||+|++||++++++...+.+|.. .|.+++|+|++. .+++++.|++|++||++.. .....+.+|.
T Consensus 329 ~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~-~l~s~~~d~tv~lwd~~~~----------~~~~~l~gH~ 397 (524)
T 2j04_B 329 VAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIY-SYIYSDGASSLRAVPSRAA----------FAVHPLVSRE 397 (524)
T ss_dssp EETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTT-EEEEECSSSEEEEEETTCT----------TCCEEEEECS
T ss_pred eccCCeEEEEECCCCCcccccccccccCcccceEeCCCcC-eEEEeCCCCcEEEEECccc----------ccceeeecCC
Confidence 99999999999998877666666653 588999999976 6899999999999999853 2334566899
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEec-----cCCCeEEEEEccCCCEEEEeeCCCcEEEEeCC-CC
Q 004214 381 KDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG-----HKRGIWSVEFSPVDQVVITASGDKTIKIWSIS-DG 454 (768)
Q Consensus 381 ~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~-~~ 454 (768)
..|++++|+|+|++|++|+.||+|++||+... .+..+.. +...+++++|+|+++.+.. .. .+.+|+.. ++
T Consensus 398 ~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~-~~--~~~~~~~~~~g 473 (524)
T 2j04_B 398 TTITAIGVSRLHPMVLAGSADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDDKYRI-DS--SYEVYPLTVND 473 (524)
T ss_dssp SCEEEEECCSSCCBCEEEETTTEEECCBSCSS-TTTCC------CCCCEEEECBCCSSSCEEEE-CC--CCCCCC-----
T ss_pred CceEEEEeCCCCCeEEEEECCCEEEEEechHh-hccccccCccceeeeEEEEeccCCCCCeEEc-cC--CceecccccCC
Confidence 99999999999999999999999999998654 2211111 1225789999999985532 22 34455443 57
Q ss_pred ceeEEeecCCCcEEEEEEEeCCC---EEEEEeCCCcEEEEECCC
Q 004214 455 SCLKTFEGHTSSVLRASFLTRGA---QIVSCGADGLVKLWTVRT 495 (768)
Q Consensus 455 ~~~~~~~~~~~~v~~~~~s~~~~---~l~s~~~dg~i~iwd~~~ 495 (768)
.++.++.+|...|.+++|+|++. ++++|+.||.|+||++.-
T Consensus 474 ~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 474 VSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp --------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred cceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence 78889999999999999999964 999999999999999853
No 68
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=5.9e-36 Score=315.84 Aligned_cols=289 Identities=15% Similarity=0.188 Sum_probs=247.6
Q ss_pred EEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeee--CCccceEEEeeeeecCCCEEEEEEeCCC
Q 004214 230 ILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLA--GHSEIVLCLDTCALSSGKILIVTGSKDN 307 (768)
Q Consensus 230 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~--~~~~~v~~l~~~~~~~~~~~l~~~~~dg 307 (768)
.....+.+|...|.+++|++.+..++++++.||.|++||+.++.....+. +|...|.+++ +.+.+..+|++++.||
T Consensus 64 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~--~~~~~~~~l~s~~~d~ 141 (383)
T 3ei3_B 64 KLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMK--FNQFNTNQLFVSSIRG 141 (383)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEE--EETTEEEEEEEEETTT
T ss_pred ceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEE--eCCCCCCEEEEEeCCC
Confidence 34556788999999999998666999999999999999999888777665 6999999998 7775656699999999
Q ss_pred eEEEEeCCCceEEEeeec---ccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeE
Q 004214 308 SVRLWDSESRCCVGVGTG---HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDIN 384 (768)
Q Consensus 308 ~i~iwd~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 384 (768)
.|++||+.+. .+..+.. |...|.+++|+|++. ++++++.||.|++||++. .....+..|...|.
T Consensus 142 ~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~~-----------~~~~~~~~h~~~v~ 208 (383)
T 3ei3_B 142 ATTLRDFSGS-VIQVFAKTDSWDYWYCCVDVSVSRQ-MLATGDSTGRLLLLGLDG-----------HEIFKEKLHKAKVT 208 (383)
T ss_dssp EEEEEETTSC-EEEEEECCCCSSCCEEEEEEETTTT-EEEEEETTSEEEEEETTS-----------CEEEEEECSSSCEE
T ss_pred EEEEEECCCC-ceEEEeccCCCCCCeEEEEECCCCC-EEEEECCCCCEEEEECCC-----------CEEEEeccCCCcEE
Confidence 9999999964 4444443 448899999999966 899999999999999842 24556678999999
Q ss_pred EEEEccCCC-EEEEEeCCCcEEEEeCCC----CceEEEEeccCCCeEEEEEcc-CCCEEEEeeCCCcEEEEeCCCCceeE
Q 004214 385 SLAVAPNDS-LVCTGSQDRTACVWRLPD----LVSVVTFRGHKRGIWSVEFSP-VDQVVITASGDKTIKIWSISDGSCLK 458 (768)
Q Consensus 385 ~~~~s~~~~-~l~~~~~dg~i~i~d~~~----~~~~~~~~~~~~~v~~v~~s~-~~~~l~t~~~d~~i~iwd~~~~~~~~ 458 (768)
+++|+|+++ ++++++.|+.|++||+.+ +..+..+ +|...|++++|+| ++++|++++.|+.|++||+.+++++.
T Consensus 209 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 287 (383)
T 3ei3_B 209 HAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPD 287 (383)
T ss_dssp EEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCS
T ss_pred EEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccc
Confidence 999999999 999999999999999987 5566666 6999999999999 99999999999999999999998888
Q ss_pred EeecCC-----------------CcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEecc--CCCcEEEEEEcCCCC
Q 004214 459 TFEGHT-----------------SSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDK--HEDKIWALAVGKKTE 519 (768)
Q Consensus 459 ~~~~~~-----------------~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~l~~s~~~~ 519 (768)
.+.+|. ..+..++|+|+|++ +++.||.|++||+.+++++..+.+ |...+..++|+|+++
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~ 365 (383)
T 3ei3_B 288 QIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGD 365 (383)
T ss_dssp EEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSS
T ss_pred ccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCcc
Confidence 877654 34555777777776 778999999999999999999987 457788889999999
Q ss_pred EEEEEeCCCcEEEEEcCC
Q 004214 520 MFATGGSDALVNLWHDST 537 (768)
Q Consensus 520 ~l~s~~~dg~v~vw~~~~ 537 (768)
+|++|+ ||.|++|++.+
T Consensus 366 ~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 366 VLASGM-GFNILIWNRED 382 (383)
T ss_dssp EEEEEE-TTEEEEEECC-
T ss_pred EEEEec-CCcEEEEecCC
Confidence 999997 99999999875
No 69
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.9e-36 Score=318.34 Aligned_cols=302 Identities=19% Similarity=0.250 Sum_probs=242.7
Q ss_pred EEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCe--eEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 004214 25 YFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK--CVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWD 102 (768)
Q Consensus 25 ~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~--~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd 102 (768)
.+..|.+.|++++|+|++++ |++|+.||.|++||+.+++ .+..+.+|...|.+++|+|++++|++++.||.|++||
T Consensus 3 ~~~~~~~~i~~~~~s~~~~~--l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd 80 (372)
T 1k8k_C 3 YHSFLVEPISCHAWNKDRTQ--IAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWT 80 (372)
T ss_dssp EEESCSSCCCEEEECTTSSE--EEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred eecccCCCeEEEEECCCCCE--EEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEE
Confidence 35569999999999999887 9999999999999999988 8899999999999999999999999999999999999
Q ss_pred CCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceee
Q 004214 103 LRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTI 182 (768)
Q Consensus 103 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~ 182 (768)
+.+++.....
T Consensus 81 ~~~~~~~~~~---------------------------------------------------------------------- 90 (372)
T 1k8k_C 81 LKGRTWKPTL---------------------------------------------------------------------- 90 (372)
T ss_dssp EETTEEEEEE----------------------------------------------------------------------
T ss_pred CCCCeeeeeE----------------------------------------------------------------------
Confidence 8654311110
Q ss_pred cccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCC
Q 004214 183 SFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIE 262 (768)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~ 262 (768)
T Consensus 91 -------------------------------------------------------------------------------- 90 (372)
T 1k8k_C 91 -------------------------------------------------------------------------------- 90 (372)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCce----EEEeeecccCcEEEEEEecC
Q 004214 263 QVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC----CVGVGTGHMGAVGAVAFSKK 338 (768)
Q Consensus 263 ~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~~~~ 338 (768)
.+..|...+.++. +.+++.. +++++.||.|++||+..+. ......+|...|.+++|+|+
T Consensus 91 --------------~~~~~~~~v~~~~--~~~~~~~-l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 153 (372)
T 1k8k_C 91 --------------VILRINRAARCVR--WAPNEKK-FAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPN 153 (372)
T ss_dssp --------------ECCCCSSCEEEEE--ECTTSSE-EEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTT
T ss_pred --------------EeecCCCceeEEE--ECCCCCE-EEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCC
Confidence 1122444555554 4455544 7777777788888776654 23334578999999999998
Q ss_pred CCcEEEEEeCCCeEEEEeCCCCCCCCcc--------ccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 004214 339 LQNFLVSGSSDHTIKVWSFDGLSDDAEQ--------PMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLP 410 (768)
Q Consensus 339 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~--------~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~ 410 (768)
+. ++++++.||.|++||+......... .........+..|...|.+++|+|++++|++++.||.|++||+.
T Consensus 154 ~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~ 232 (372)
T 1k8k_C 154 SV-LLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADAD 232 (372)
T ss_dssp SS-EEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGG
T ss_pred CC-EEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECC
Confidence 65 8999999999999997633211100 01233455566889999999999999999999999999999999
Q ss_pred CCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCC--Cc--e------------------------------
Q 004214 411 DLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISD--GS--C------------------------------ 456 (768)
Q Consensus 411 ~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~--~~--~------------------------------ 456 (768)
+++.+..+..|..+|.+++|+|+++++++| .|+.|++|++.+ +. +
T Consensus 233 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (372)
T 1k8k_C 233 KKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASS 311 (372)
T ss_dssp GTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC--
T ss_pred CCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhccccccc
Confidence 999999999999999999999999988888 899999999987 42 1
Q ss_pred e------EEe-ecCCCcEEEEEEE-eCC---CEEEEEeCCCcEEEEECCCCe
Q 004214 457 L------KTF-EGHTSSVLRASFL-TRG---AQIVSCGADGLVKLWTVRTGE 497 (768)
Q Consensus 457 ~------~~~-~~~~~~v~~~~~s-~~~---~~l~s~~~dg~i~iwd~~~~~ 497 (768)
. ..+ .+|...|++++|. ++| ++|++|+.||.|++|++.+++
T Consensus 312 ~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 312 EGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp -------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred ccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence 0 223 4899999999976 566 899999999999999997754
No 70
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=2.3e-36 Score=316.98 Aligned_cols=290 Identities=15% Similarity=0.241 Sum_probs=249.0
Q ss_pred eecccCCceeEEEEecC---CCCEEEEEeCCCcEEEEECCCceeeeeeeC-----CccceEEEeeeeecCC---CEEEEE
Q 004214 234 RLVGYNEEILDLKFLGE---EEQYLAVATNIEQVQVYDLSSMSCSYVLAG-----HSEIVLCLDTCALSSG---KILIVT 302 (768)
Q Consensus 234 ~~~~~~~~i~~~~~~~~---~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~-----~~~~v~~l~~~~~~~~---~~~l~~ 302 (768)
...+|..+|.+++|+|. ....+++++.++.|++||+.++..+..+.. |...|.+++ +.+++ +.+|++
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~~~l~~ 90 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCA--WTYDSNTSHPLLAV 90 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEE--EEECTTTCCEEEEE
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEE--eccCCCCCCCEEEE
Confidence 44589999999999974 556677777778999999998887766654 557799998 55552 346999
Q ss_pred EeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEe---ecc
Q 004214 303 GSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVV---AAH 379 (768)
Q Consensus 303 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~---~~~ 379 (768)
|+.||.|++||+.+++.+..+.+|...|.+++|+|++..++++++.||.|++||+... ...... ..|
T Consensus 91 ~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~----------~~~~~~~~~~~~ 160 (366)
T 3k26_A 91 AGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD----------TLVAIFGGVEGH 160 (366)
T ss_dssp EETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTT----------EEEEEECSTTSC
T ss_pred ecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecC----------eEEEEecccccc
Confidence 9999999999999999999999999999999999944558999999999999999743 233333 578
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEe----------------------------ccCCCeEEEEEc
Q 004214 380 GKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFR----------------------------GHKRGIWSVEFS 431 (768)
Q Consensus 380 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~----------------------------~~~~~v~~v~~s 431 (768)
...|.+++|+|++++|++++.||.|++||+.+++....+. +|...|.+++|+
T Consensus 161 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 240 (366)
T 3k26_A 161 RDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL 240 (366)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE
T ss_pred cCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc
Confidence 9999999999999999999999999999998775543333 399999999999
Q ss_pred cCCCEEEEeeCCCcEEEEeCCCCce--------------eEEeecCCCcEEEEEEEeC--CCEEEEEeCCCcEEEEECCC
Q 004214 432 PVDQVVITASGDKTIKIWSISDGSC--------------LKTFEGHTSSVLRASFLTR--GAQIVSCGADGLVKLWTVRT 495 (768)
Q Consensus 432 ~~~~~l~t~~~d~~i~iwd~~~~~~--------------~~~~~~~~~~v~~~~~s~~--~~~l~s~~~dg~i~iwd~~~ 495 (768)
++++++++.|+.|++||+.++.. +..+.+|...|++++|+|+ +++|++|+.||.|++||+.+
T Consensus 241 --~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~ 318 (366)
T 3k26_A 241 --GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEV 318 (366)
T ss_dssp --TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCS
T ss_pred --CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCC
Confidence 78999999999999999988754 7888899999999999999 99999999999999999998
Q ss_pred Ce----EEEEeccC--CCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 004214 496 GE----CIATYDKH--EDKIWALAVGKKTEMFATGGSDALVNLWHDST 537 (768)
Q Consensus 496 ~~----~~~~~~~~--~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~ 537 (768)
++ ....+..| ...|++++|+|++++|++++.||.|++|++.+
T Consensus 319 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 319 EDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp SSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred CCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence 75 44577777 79999999999999999999999999999853
No 71
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=2.7e-36 Score=315.25 Aligned_cols=296 Identities=18% Similarity=0.268 Sum_probs=238.7
Q ss_pred EEEEEcCCCcEEEEEEeeCCCccEEEEEeC---CCcEEEEECCCCeeEEEe-cCccceeEEEEEcCC---CCEEEEEeCC
Q 004214 23 THYFKGHKGVVSSILFHPDTDKSLLFSGSD---DATVRVWDLLAKKCVATL-DKHFSRVTSMAITSD---GSTLISAGRD 95 (768)
Q Consensus 23 ~~~l~gh~~~V~~l~~spd~~~~~l~sg~~---dg~I~iWd~~~~~~~~~l-~~h~~~V~~l~fs~d---~~~L~s~~~d 95 (768)
.+.+.+|.+.|++++|+|++.. ++++|+. ||.|+|||+.+++..... .+|...|.+++|+|+ +++|++++.|
T Consensus 11 ~~~~~~h~~~v~~~~~~p~~~~-l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d 89 (357)
T 3i2n_A 11 AHIQKGFNYTVFDCKWVPCSAK-FVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFG 89 (357)
T ss_dssp EEEEEECSSCEEEEEECTTSSE-EEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETT
T ss_pred hhhccCCCCceEEEEEcCCCce-EEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCC
Confidence 4567889999999999999864 4667776 999999999998876543 369999999999998 6999999999
Q ss_pred CeEEEEECCCCe-eeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeee
Q 004214 96 KVVNLWDLRDYS-CKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYE 174 (768)
Q Consensus 96 g~i~vWd~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~ 174 (768)
|.|++||+.+++ .+
T Consensus 90 g~i~iwd~~~~~~~~----------------------------------------------------------------- 104 (357)
T 3i2n_A 90 GNLHIWNLEAPEMPV----------------------------------------------------------------- 104 (357)
T ss_dssp SCEEEECTTSCSSCS-----------------------------------------------------------------
T ss_pred CeEEEEeCCCCCccE-----------------------------------------------------------------
Confidence 999999987643 11
Q ss_pred ecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCE
Q 004214 175 QKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQY 254 (768)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 254 (768)
T Consensus 105 -------------------------------------------------------------------------------- 104 (357)
T 3i2n_A 105 -------------------------------------------------------------------------------- 104 (357)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeee----eecCCCEEEEEEeCCCeEEEEeCCCce-EEEeeecccC-
Q 004214 255 LAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTC----ALSSGKILIVTGSKDNSVRLWDSESRC-CVGVGTGHMG- 328 (768)
Q Consensus 255 l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~----~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~- 328 (768)
..+.+|...|.++.+. +.+++.. |++|+.||.|++||+.++. .+..+..|.+
T Consensus 105 ---------------------~~~~~~~~~v~~~~~~~~~~~s~~~~~-l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~ 162 (357)
T 3i2n_A 105 ---------------------YSVKGHKEIINAIDGIGGLGIGEGAPE-IVTGSRDGTVKVWDPRQKDDPVANMEPVQGE 162 (357)
T ss_dssp ---------------------EEECCCSSCEEEEEEESGGGCC-CCCE-EEEEETTSCEEEECTTSCSSCSEEECCCTTS
T ss_pred ---------------------EEEEecccceEEEeeccccccCCCccE-EEEEeCCCeEEEEeCCCCCCcceeccccCCC
Confidence 1222344444444321 3455554 9999999999999999876 6666666554
Q ss_pred ---cEEEEE----EecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEcc---CCCEEEEE
Q 004214 329 ---AVGAVA----FSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP---NDSLVCTG 398 (768)
Q Consensus 329 ---~v~~~~----~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~---~~~~l~~~ 398 (768)
.+.+++ |+|++. ++++++.||.|++||+... .......|...|.+++|+| ++.+++++
T Consensus 163 ~~~~v~~~~~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~-----------~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~ 230 (357)
T 3i2n_A 163 NKRDCWTVAFGNAYNQEER-VVCAGYDNGDIKLFDLRNM-----------ALRWETNIKNGVCSLEFDRKDISMNKLVAT 230 (357)
T ss_dssp CCCCEEEEEEECCCC-CCC-EEEEEETTSEEEEEETTTT-----------EEEEEEECSSCEEEEEESCSSSSCCEEEEE
T ss_pred CCCceEEEEEEeccCCCCC-EEEEEccCCeEEEEECccC-----------ceeeecCCCCceEEEEcCCCCCCCCEEEEE
Confidence 899998 677755 8999999999999999753 1234467889999999999 99999999
Q ss_pred eCCCcEEEEeCCCCceEEEEe-----ccCCCeEEEEEccCCC-EEEEeeCCCcEEEEeCCCC------------------
Q 004214 399 SQDRTACVWRLPDLVSVVTFR-----GHKRGIWSVEFSPVDQ-VVITASGDKTIKIWSISDG------------------ 454 (768)
Q Consensus 399 ~~dg~i~i~d~~~~~~~~~~~-----~~~~~v~~v~~s~~~~-~l~t~~~d~~i~iwd~~~~------------------ 454 (768)
+.||.|++||+++++....+. +|...|++++|+|+++ +|++++.||.|++||+..+
T Consensus 231 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~ 310 (357)
T 3i2n_A 231 SLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGS 310 (357)
T ss_dssp ESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCE
T ss_pred CCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccc
Confidence 999999999998776554444 8999999999999998 8999999999999999754
Q ss_pred -ceeEEeecCCCcEEEEEEEeCCCEEE-EEeCCCcEEEEECCCCeE
Q 004214 455 -SCLKTFEGHTSSVLRASFLTRGAQIV-SCGADGLVKLWTVRTGEC 498 (768)
Q Consensus 455 -~~~~~~~~~~~~v~~~~~s~~~~~l~-s~~~dg~i~iwd~~~~~~ 498 (768)
+++..+.+|...|++++|+|++++|+ +++.||.|++||+.+.+.
T Consensus 311 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 311 VSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp EEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred cceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence 46778889999999999999999998 899999999999987654
No 72
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-35 Score=302.39 Aligned_cols=287 Identities=24% Similarity=0.353 Sum_probs=257.3
Q ss_pred eEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCe
Q 004214 229 LILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNS 308 (768)
Q Consensus 229 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~ 308 (768)
......+.+|.+.|.+++| +++.++++++.+|.|++||+.++.....+..|...|.+++ +.+++.. +++|+.||.
T Consensus 8 ~~~~~~l~~h~~~v~~~~~--~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~-l~~~~~dg~ 82 (313)
T 3odt_A 8 YQLSATLKGHDQDVRDVVA--VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVC--YDSEKEL-LLFGGKDTM 82 (313)
T ss_dssp CEEEEEECCCSSCEEEEEE--EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEE--EETTTTE-EEEEETTSC
T ss_pred HHHHHHhhCCCCCcEEEEe--cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEE--ECCCCCE-EEEecCCCe
Confidence 3455678899999999999 5778899999999999999999999999999999999998 7777765 999999999
Q ss_pred EEEEeCCCc---eEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEE
Q 004214 309 VRLWDSESR---CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINS 385 (768)
Q Consensus 309 i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 385 (768)
|++|++... +....+.+|...|.+++|.+ .++++++.||.|++||.. ........|...+.+
T Consensus 83 i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~d~~i~~~d~~------------~~~~~~~~~~~~v~~ 147 (313)
T 3odt_A 83 INGVPLFATSGEDPLYTLIGHQGNVCSLSFQD---GVVISGSWDKTAKVWKEG------------SLVYNLQAHNASVWD 147 (313)
T ss_dssp EEEEETTCCTTSCC-CEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETT------------EEEEEEECCSSCEEE
T ss_pred EEEEEeeecCCCCcccchhhcccCEEEEEecC---CEEEEEeCCCCEEEEcCC------------cEEEecccCCCceeE
Confidence 999998653 56777889999999999943 389999999999999922 245566779999999
Q ss_pred EEEcc-CCCEEEEEeCCCcEEEEeCCCCceEEEEec-cCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecC
Q 004214 386 LAVAP-NDSLVCTGSQDRTACVWRLPDLVSVVTFRG-HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGH 463 (768)
Q Consensus 386 ~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~ 463 (768)
++++| ++.++++++.||.|++|| ..+....+.. |...+.+++|+|++. +++++.||.|++||+++++++..+.+|
T Consensus 148 ~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~ 224 (313)
T 3odt_A 148 AKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGH 224 (313)
T ss_dssp EEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred EEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcC
Confidence 99999 999999999999999999 5566777777 899999999999998 999999999999999999999999999
Q ss_pred CCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCHHH
Q 004214 464 TSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAE 540 (768)
Q Consensus 464 ~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~~~ 540 (768)
...|++++|+|++ .|++++.||.|++||+.+++++..+..|...|++++|+|+++ +++++.||.|++|++.+++.
T Consensus 225 ~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~ 299 (313)
T 3odt_A 225 ESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRW 299 (313)
T ss_dssp SSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGC
T ss_pred CceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCce
Confidence 9999999999999 699999999999999999999999999999999999999998 66799999999999987654
No 73
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=8e-37 Score=327.69 Aligned_cols=299 Identities=15% Similarity=0.215 Sum_probs=231.8
Q ss_pred EEEEEcCCCcEEEEEEeeC-CCccEEEEEeCCCcEEEEECCCCee--EEEecCccceeEEEEEcC-CCCEEEEEeCCCeE
Q 004214 23 THYFKGHKGVVSSILFHPD-TDKSLLFSGSDDATVRVWDLLAKKC--VATLDKHFSRVTSMAITS-DGSTLISAGRDKVV 98 (768)
Q Consensus 23 ~~~l~gh~~~V~~l~~spd-~~~~~l~sg~~dg~I~iWd~~~~~~--~~~l~~h~~~V~~l~fs~-d~~~L~s~~~dg~i 98 (768)
.....+|...|+||+|||. +.. ||+|+.||+|+|||+.+++. +..+.+|.+.|++|+|+| ++++|+|++.||+|
T Consensus 112 ~~~~~~~~~~V~~l~~~P~~~~~--lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v 189 (435)
T 4e54_B 112 LQKAAPFDRRATSLAWHPTHPST--VAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTT 189 (435)
T ss_dssp CCEEEECSSCEEEEEECSSCTTC--EEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCE
T ss_pred cccCCCCCCCEEEEEEeCCCCCE--EEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEE
Confidence 3456789999999999995 444 99999999999999987754 445678999999999998 78999999999999
Q ss_pred EEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCC
Q 004214 99 NLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSS 178 (768)
Q Consensus 99 ~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~ 178 (768)
++||++++.......
T Consensus 190 ~iwd~~~~~~~~~~~----------------------------------------------------------------- 204 (435)
T 4e54_B 190 RLQDFKGNILRVFAS----------------------------------------------------------------- 204 (435)
T ss_dssp EEEETTSCEEEEEEC-----------------------------------------------------------------
T ss_pred EEeeccCCceeEEec-----------------------------------------------------------------
Confidence 999987542110000
Q ss_pred ceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEE
Q 004214 179 DVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVA 258 (768)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 258 (768)
T Consensus 205 -------------------------------------------------------------------------------- 204 (435)
T 4e54_B 205 -------------------------------------------------------------------------------- 204 (435)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecC
Q 004214 259 TNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKK 338 (768)
Q Consensus 259 ~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~ 338 (768)
...+...+.+++ +.+++.. |++|+.||.|++||+.. +.+..+.+|...|.+++|+|+
T Consensus 205 -------------------~~~~~~~~~~~~--~~~~~~~-l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~ 261 (435)
T 4e54_B 205 -------------------SDTINIWFCSLD--VSASSRM-VVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPC 261 (435)
T ss_dssp -------------------CSSCSCCCCCEE--EETTTTE-EEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTT
T ss_pred -------------------cCCCCccEEEEE--ECCCCCE-EEEEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCC
Confidence 000111222333 4455554 88899999999999864 456677899999999999999
Q ss_pred CCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEE
Q 004214 339 LQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTF 418 (768)
Q Consensus 339 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 418 (768)
+..++++++.|++|++||++...... .......|...|++++|+|+|++|++++.||.|++||+.++.....+
T Consensus 262 ~~~~~~s~s~d~~v~iwd~~~~~~~~-------~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~ 334 (435)
T 4e54_B 262 CDWFLATASVDQTVKIWDLRQVRGKA-------SFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGL 334 (435)
T ss_dssp CSSEEEEEETTSBCCEEETTTCCSSS-------CCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEE
T ss_pred CceEEEEecCcceeeEEecccccccc-------eEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEE
Confidence 88899999999999999998653211 22233568999999999999999999999999999999999888877
Q ss_pred eccCC------CeEEEEEccCCCEEEEee------------CCCcEEEEeCCCCceeEEee-cCCCcEEEE-EEEeCCCE
Q 004214 419 RGHKR------GIWSVEFSPVDQVVITAS------------GDKTIKIWSISDGSCLKTFE-GHTSSVLRA-SFLTRGAQ 478 (768)
Q Consensus 419 ~~~~~------~v~~v~~s~~~~~l~t~~------------~d~~i~iwd~~~~~~~~~~~-~~~~~v~~~-~~s~~~~~ 478 (768)
..|.. .+....|+|++.++++++ .++.|++||..+++++..+. +|...|.++ +|+|+|++
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~ 414 (435)
T 4e54_B 335 IPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDT 414 (435)
T ss_dssp CCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSC
T ss_pred ecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCE
Confidence 76643 234556777777776654 34679999999999988865 688888887 69999999
Q ss_pred EEEEeCCCcEEEEECCCCeEE
Q 004214 479 IVSCGADGLVKLWTVRTGECI 499 (768)
Q Consensus 479 l~s~~~dg~i~iwd~~~~~~~ 499 (768)
|++|+ |+.|+||+++++++.
T Consensus 415 lasg~-d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 415 LASAM-GYHILIWSQQEARTR 434 (435)
T ss_dssp EEEEC-SSEEEECCCC-----
T ss_pred EEEEc-CCcEEEEECCcCeee
Confidence 99876 789999999988753
No 74
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=8.6e-36 Score=313.37 Aligned_cols=292 Identities=20% Similarity=0.210 Sum_probs=253.0
Q ss_pred ccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCce--eeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeC
Q 004214 237 GYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMS--CSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDS 314 (768)
Q Consensus 237 ~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~--~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~ 314 (768)
.|..+|.+++|++ +++++++++.++.|++||+.+++ ....+.+|...|.+++ +.+++.. +++++.||.|++||+
T Consensus 6 ~~~~~i~~~~~s~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~--~~~~~~~-l~~~~~dg~i~vwd~ 81 (372)
T 1k8k_C 6 FLVEPISCHAWNK-DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVD--WAPDSNR-IVTCGTDRNAYVWTL 81 (372)
T ss_dssp SCSSCCCEEEECT-TSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEE--EETTTTE-EEEEETTSCEEEEEE
T ss_pred ccCCCeEEEEECC-CCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEE--EeCCCCE-EEEEcCCCeEEEEEC
Confidence 4778999999985 78899999999999999999987 8888999999999998 7777765 999999999999999
Q ss_pred CCceEEEe--eecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCC
Q 004214 315 ESRCCVGV--GTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND 392 (768)
Q Consensus 315 ~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 392 (768)
.+++.... +..|...|.+++|+|++. ++++++.||.|++||+..... ..........|...|.+++|+|++
T Consensus 82 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~v~i~d~~~~~~------~~~~~~~~~~~~~~i~~~~~~~~~ 154 (372)
T 1k8k_C 82 KGRTWKPTLVILRINRAARCVRWAPNEK-KFAVGSGSRVISICYFEQEND------WWVCKHIKKPIRSTVLSLDWHPNS 154 (372)
T ss_dssp ETTEEEEEEECCCCSSCEEEEEECTTSS-EEEEEETTSSEEEEEEETTTT------EEEEEEECTTCCSCEEEEEECTTS
T ss_pred CCCeeeeeEEeecCCCceeEEEECCCCC-EEEEEeCCCEEEEEEecCCCc------ceeeeeeecccCCCeeEEEEcCCC
Confidence 88875444 367899999999999965 899999999999999975421 011223335688999999999999
Q ss_pred CEEEEEeCCCcEEEEeC------------------CCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCC
Q 004214 393 SLVCTGSQDRTACVWRL------------------PDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG 454 (768)
Q Consensus 393 ~~l~~~~~dg~i~i~d~------------------~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~ 454 (768)
++|++++.||.|++||+ ..++.+..+.+|...|.+++|+|++++|++++.|+.|++||+.++
T Consensus 155 ~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~ 234 (372)
T 1k8k_C 155 VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKK 234 (372)
T ss_dssp SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGT
T ss_pred CEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence 99999999999999995 467888889899999999999999999999999999999999999
Q ss_pred ceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCC--CeE--------------------------------E-
Q 004214 455 SCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRT--GEC--------------------------------I- 499 (768)
Q Consensus 455 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~--~~~--------------------------------~- 499 (768)
+++..+.+|..+|.+++|+|++.+|++| .||.|++|++.+ ++. .
T Consensus 235 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (372)
T 1k8k_C 235 MAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEG 313 (372)
T ss_dssp TEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC----
T ss_pred ceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhccccccccc
Confidence 9999999999999999999999988887 899999999988 431 0
Q ss_pred -----EEe-ccCCCcEEEEEEc-CCC---CEEEEEeCCCcEEEEEcCCHHH
Q 004214 500 -----ATY-DKHEDKIWALAVG-KKT---EMFATGGSDALVNLWHDSTAAE 540 (768)
Q Consensus 500 -----~~~-~~~~~~v~~l~~s-~~~---~~l~s~~~dg~v~vw~~~~~~~ 540 (768)
..+ .+|..+|++++|+ ++| .+|++|+.||.|++|++.+.+.
T Consensus 314 ~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~ 364 (372)
T 1k8k_C 314 SAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLES 364 (372)
T ss_dssp -----CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHH
T ss_pred CccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChhH
Confidence 223 3899999999966 676 9999999999999999876543
No 75
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=4.7e-36 Score=313.40 Aligned_cols=294 Identities=17% Similarity=0.279 Sum_probs=247.9
Q ss_pred eeecccCCceeEEEEecCCCCEEEEEeC---CCcEEEEECCCceeeeee-eCCccceEEEeeeeecCC--CEEEEEEeCC
Q 004214 233 KRLVGYNEEILDLKFLGEEEQYLAVATN---IEQVQVYDLSSMSCSYVL-AGHSEIVLCLDTCALSSG--KILIVTGSKD 306 (768)
Q Consensus 233 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~---~~~i~i~d~~~~~~~~~~-~~~~~~v~~l~~~~~~~~--~~~l~~~~~d 306 (768)
....+|...|.+++|++.+..++++++. ++.|++||+.+++..... .+|...|.++. +.+++ +.++++|+.|
T Consensus 12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~~l~~~~~d 89 (357)
T 3i2n_A 12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGT--FGATSLQQRYLATGDFG 89 (357)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEE--CTTCCTTTCCEEEEETT
T ss_pred hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEE--EcCCCCCCceEEEecCC
Confidence 4456799999999999877677778876 899999999988766443 47899999997 66663 3459999999
Q ss_pred CeEEEEeCCCce-EEEeeecccCcEEEEEE------ecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeecc
Q 004214 307 NSVRLWDSESRC-CVGVGTGHMGAVGAVAF------SKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAH 379 (768)
Q Consensus 307 g~i~iwd~~~~~-~~~~~~~~~~~v~~~~~------~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 379 (768)
|.|++||+.++. .+..+.+|...|.++.| +|++. ++++++.||.|++||+..... .......|
T Consensus 90 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~-~l~~~~~d~~i~vwd~~~~~~---------~~~~~~~~ 159 (357)
T 3i2n_A 90 GNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAP-EIVTGSRDGTVKVWDPRQKDD---------PVANMEPV 159 (357)
T ss_dssp SCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCC-EEEEEETTSCEEEECTTSCSS---------CSEEECCC
T ss_pred CeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCcc-EEEEEeCCCeEEEEeCCCCCC---------cceecccc
Confidence 999999999887 88888999999999965 56755 899999999999999985421 22223333
Q ss_pred ----CCCeEEEE----EccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEcc---CCCEEEEeeCCCcEEE
Q 004214 380 ----GKDINSLA----VAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSP---VDQVVITASGDKTIKI 448 (768)
Q Consensus 380 ----~~~i~~~~----~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~---~~~~l~t~~~d~~i~i 448 (768)
...+.+++ |+|+++++++++.||.|++||+++++.... ..|...|.+++|+| ++.+|++++.||.|++
T Consensus 160 ~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i 238 (357)
T 3i2n_A 160 QGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHV 238 (357)
T ss_dssp TTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEE
T ss_pred CCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEE
Confidence 33788888 788999999999999999999999887544 56899999999999 9999999999999999
Q ss_pred EeCCCCceeEEee-----cCCCcEEEEEEEeCCC-EEEEEeCCCcEEEEECCCC-------------------eEEEEec
Q 004214 449 WSISDGSCLKTFE-----GHTSSVLRASFLTRGA-QIVSCGADGLVKLWTVRTG-------------------ECIATYD 503 (768)
Q Consensus 449 wd~~~~~~~~~~~-----~~~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~-------------------~~~~~~~ 503 (768)
||+++++++..+. +|...|++++|+|+++ +|++++.||.|++||+.++ +++..+.
T Consensus 239 ~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 318 (357)
T 3i2n_A 239 FDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVT 318 (357)
T ss_dssp EEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEE
T ss_pred EeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccc
Confidence 9999887766665 8999999999999998 8999999999999999754 5678888
Q ss_pred cCCCcEEEEEEcCCCCEEE-EEeCCCcEEEEEcCCHH
Q 004214 504 KHEDKIWALAVGKKTEMFA-TGGSDALVNLWHDSTAA 539 (768)
Q Consensus 504 ~~~~~v~~l~~s~~~~~l~-s~~~dg~v~vw~~~~~~ 539 (768)
+|..+|++++|+|++++|+ +++.||.|++|++.+.+
T Consensus 319 ~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 319 LSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp CCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred cCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence 9999999999999999998 89999999999998754
No 76
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=7.5e-36 Score=312.97 Aligned_cols=299 Identities=16% Similarity=0.271 Sum_probs=239.9
Q ss_pred EEEcCCCcEEEEEEeeC---CCccEEEEEeCCCcEEEEECCCCeeEEEecC-----ccceeEEEEEcCC----CCEEEEE
Q 004214 25 YFKGHKGVVSSILFHPD---TDKSLLFSGSDDATVRVWDLLAKKCVATLDK-----HFSRVTSMAITSD----GSTLISA 92 (768)
Q Consensus 25 ~l~gh~~~V~~l~~spd---~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~-----h~~~V~~l~fs~d----~~~L~s~ 92 (768)
...+|.+.|++++|+|+ +... +++++.++.|++||+.+++.+..+.. |...|++++|+|+ +++|+++
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~-~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~ 91 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPL-VFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVA 91 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCE-EEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEE
T ss_pred eecCCCCceEEEEEecccCCCCce-EEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEe
Confidence 34489999999999985 4433 55555566999999998888777664 5577999999998 6688899
Q ss_pred eCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCcee
Q 004214 93 GRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACL 172 (768)
Q Consensus 93 ~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~ 172 (768)
+.||.|++||+.+++.
T Consensus 92 ~~dg~i~v~d~~~~~~---------------------------------------------------------------- 107 (366)
T 3k26_A 92 GSRGIIRIINPITMQC---------------------------------------------------------------- 107 (366)
T ss_dssp ETTCEEEEECTTTCCE----------------------------------------------------------------
T ss_pred cCCCEEEEEEchhceE----------------------------------------------------------------
Confidence 9888888888765432
Q ss_pred eeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCC
Q 004214 173 YEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEE 252 (768)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 252 (768)
T Consensus 108 -------------------------------------------------------------------------------- 107 (366)
T 3k26_A 108 -------------------------------------------------------------------------------- 107 (366)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEee---ecccCc
Q 004214 253 QYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVG---TGHMGA 329 (768)
Q Consensus 253 ~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~ 329 (768)
...+.+|...|.++. +.+.++.+|++|+.||.|++||+.+++.+..+ .+|...
T Consensus 108 ----------------------~~~~~~~~~~i~~~~--~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 163 (366)
T 3k26_A 108 ----------------------IKHYVGHGNAINELK--FHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDE 163 (366)
T ss_dssp ----------------------EEEEESCCSCEEEEE--ECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSC
T ss_pred ----------------------eeeecCCCCcEEEEE--ECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCc
Confidence 113345666777776 66634445999999999999999999998888 689999
Q ss_pred EEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCc------------------cccccceeeEeeccCCCeEEEEEccC
Q 004214 330 VGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAE------------------QPMNLKAKAVVAAHGKDINSLAVAPN 391 (768)
Q Consensus 330 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~------------------~~~~~~~~~~~~~~~~~i~~~~~s~~ 391 (768)
|.+++|+|++. ++++++.||.|++||+........ .............|...|.+++|+
T Consensus 164 v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-- 240 (366)
T 3k26_A 164 VLSADYDLLGE-KIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL-- 240 (366)
T ss_dssp EEEEEECTTSS-EEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--
T ss_pred eeEEEECCCCC-EEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--
Confidence 99999999866 899999999999999985321000 000011122334489999999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCCce--------------EEEEeccCCCeEEEEEccC--CCEEEEeeCCCcEEEEeCCCCc
Q 004214 392 DSLVCTGSQDRTACVWRLPDLVS--------------VVTFRGHKRGIWSVEFSPV--DQVVITASGDKTIKIWSISDGS 455 (768)
Q Consensus 392 ~~~l~~~~~dg~i~i~d~~~~~~--------------~~~~~~~~~~v~~v~~s~~--~~~l~t~~~d~~i~iwd~~~~~ 455 (768)
++++++++.||.|++||+.++.. +..+.+|...|++++|+|+ +++|++|+.||.|++||+.+++
T Consensus 241 ~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~ 320 (366)
T 3k26_A 241 GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVED 320 (366)
T ss_dssp TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSS
T ss_pred CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCC
Confidence 77999999999999999987644 7788899999999999999 9999999999999999999886
Q ss_pred ee----EEeecC--CCcEEEEEEEeCCCEEEEEeCCCcEEEEECCC
Q 004214 456 CL----KTFEGH--TSSVLRASFLTRGAQIVSCGADGLVKLWTVRT 495 (768)
Q Consensus 456 ~~----~~~~~~--~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 495 (768)
+. ..+.+| ...|++++|+|++++|++++.||.|++||+.+
T Consensus 321 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 321 PHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp GGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred CccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence 44 477777 79999999999999999999999999999853
No 77
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.1e-34 Score=309.57 Aligned_cols=278 Identities=22% Similarity=0.376 Sum_probs=244.5
Q ss_pred eeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeee--CCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceE
Q 004214 242 ILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLA--GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC 319 (768)
Q Consensus 242 i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~--~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 319 (768)
...+.|++ .+.||+|. |+.|++||..++++...+. +|...|++++ +.+++.. |++|+.||.|++||+.+++.
T Consensus 108 ~~~l~wS~--~n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~--fspdg~~-lasgs~Dg~v~iWd~~~~~~ 181 (420)
T 4gga_A 108 LNLVDWSS--GNVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVA--WIKEGNY-LAVGTSSAEVQLWDVQQQKR 181 (420)
T ss_dssp CBCEEECT--TSEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEE--ECTTSSE-EEEEETTSCEEEEETTTTEE
T ss_pred ceeEEECC--CCEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEE--ECCCCCE-EEEEECCCeEEEEEcCCCcE
Confidence 45688874 35888876 7999999999999877664 6778899998 7777775 99999999999999999999
Q ss_pred EEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEe
Q 004214 320 VGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGS 399 (768)
Q Consensus 320 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 399 (768)
+..+.+|...+.++++++. ++++|+.|+.+++||.... ......+..|...+..+.++|+++++++++
T Consensus 182 ~~~~~~h~~~v~~~s~~~~---~l~sgs~d~~i~~~d~~~~---------~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~ 249 (420)
T 4gga_A 182 LRNMTSHSARVGSLSWNSY---ILSSGSRSGHIHHHDVRVA---------EHHVATLSGHSQEVCGLRWAPDGRHLASGG 249 (420)
T ss_dssp EEEECCCSSCEEEEEEETT---EEEEEETTSEEEEEETTSS---------SCEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred EEEEeCCCCceEEEeeCCC---EEEEEeCCCceeEeeeccc---------ceeeEEecccccceeeeeecCCCCeeeeee
Confidence 9999999999999988754 8999999999999998743 235566788999999999999999999999
Q ss_pred CCCcEEEEeCCCCc----eEEEEeccCCCeEEEEEccCC-CEEEE--eeCCCcEEEEeCCCCceeEEeecCCCcEEEEEE
Q 004214 400 QDRTACVWRLPDLV----SVVTFRGHKRGIWSVEFSPVD-QVVIT--ASGDKTIKIWSISDGSCLKTFEGHTSSVLRASF 472 (768)
Q Consensus 400 ~dg~i~i~d~~~~~----~~~~~~~~~~~v~~v~~s~~~-~~l~t--~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 472 (768)
.|+.+++|+..+++ .+.....|...|.+++|+|++ .++++ |+.|++|++||+.++.++..+..| ..+.++.|
T Consensus 250 ~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~ 328 (420)
T 4gga_A 250 NDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILW 328 (420)
T ss_dssp TTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEEE
T ss_pred ccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccc-cceeeeee
Confidence 99999999998764 456777899999999999975 45554 457999999999999999998854 67889999
Q ss_pred EeCCCEEEEEe--CCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCH
Q 004214 473 LTRGAQIVSCG--ADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTA 538 (768)
Q Consensus 473 s~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~ 538 (768)
+++++.+++++ .||.|+|||+.+++++.++.+|.+.|++++|+|+|++|+||+.||+|+||++.+.
T Consensus 329 ~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~ 396 (420)
T 4gga_A 329 SPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 396 (420)
T ss_dssp ETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCS
T ss_pred cCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 99999998765 6899999999999999999999999999999999999999999999999998754
No 78
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.9e-34 Score=307.79 Aligned_cols=289 Identities=24% Similarity=0.402 Sum_probs=226.5
Q ss_pred EEEeecCCCcEEEEECCCCEEEEEEE--cCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEE
Q 004214 2 FALLEGADRKVLVWDVDGGFCTHYFK--GHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTS 79 (768)
Q Consensus 2 ~latg~~dg~i~vwd~~~~~~~~~l~--gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~ 79 (768)
+||+| .|++|+|||+.+|++++.+. +|...|++|+|+|+|++ ||+|+.||+|+|||+.+++++..+.+|...|.+
T Consensus 118 ~lAvg-ld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~--lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~ 194 (420)
T 4gga_A 118 VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNY--LAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGS 194 (420)
T ss_dssp EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSE--EEEEETTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCE--EEEEECCCeEEEEEcCCCcEEEEEeCCCCceEE
Confidence 46665 49999999999999888765 67889999999999987 999999999999999999999999999999998
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCC
Q 004214 80 MAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGER 159 (768)
Q Consensus 80 l~fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (768)
++++ +..|++++.|+.+++||......
T Consensus 195 ~s~~--~~~l~sgs~d~~i~~~d~~~~~~--------------------------------------------------- 221 (420)
T 4gga_A 195 LSWN--SYILSSGSRSGHIHHHDVRVAEH--------------------------------------------------- 221 (420)
T ss_dssp EEEE--TTEEEEEETTSEEEEEETTSSSC---------------------------------------------------
T ss_pred EeeC--CCEEEEEeCCCceeEeeecccce---------------------------------------------------
Confidence 8775 67999999999999998754210
Q ss_pred cEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccC
Q 004214 160 GIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYN 239 (768)
Q Consensus 160 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (768)
T Consensus 222 -------------------------------------------------------------------------------- 221 (420)
T 4gga_A 222 -------------------------------------------------------------------------------- 221 (420)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCce-
Q 004214 240 EEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC- 318 (768)
Q Consensus 240 ~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~- 318 (768)
.+..+.+|...+.++. +.+.+.. +++++.||.+++|+..+++
T Consensus 222 ----------------------------------~~~~~~~h~~~~~~~~--~~~~g~~-l~s~~~D~~v~i~~~~~~~~ 264 (420)
T 4gga_A 222 ----------------------------------HVATLSGHSQEVCGLR--WAPDGRH-LASGGNDNLVNVWPSAPGEG 264 (420)
T ss_dssp ----------------------------------EEEEEECCSSCEEEEE--ECTTSSE-EEEEETTSCEEEEESSCCSS
T ss_pred ----------------------------------eeEEecccccceeeee--ecCCCCe-eeeeeccccceEEeeccccc
Confidence 0113344555666654 5555554 8888888888888887654
Q ss_pred ---EEEeeecccCcEEEEEEecCCCcEEEEE--eCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCC
Q 004214 319 ---CVGVGTGHMGAVGAVAFSKKLQNFLVSG--SSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDS 393 (768)
Q Consensus 319 ---~~~~~~~~~~~v~~~~~~~~~~~~l~s~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 393 (768)
.+.....|...|.+++|+|.+..+++++ +.|++|++||+..+ ..... ..+...+.++.|+|+++
T Consensus 265 ~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~----------~~~~~-~~~~~~v~~~~~~~~~~ 333 (420)
T 4gga_A 265 GWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG----------ACLSA-VDAHSQVCSILWSPHYK 333 (420)
T ss_dssp CSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTT----------EEEEE-EECSSCEEEEEEETTTT
T ss_pred cceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcc----------cccee-eccccceeeeeecCCCC
Confidence 3455678999999999999988888765 47999999999854 22333 33456799999999999
Q ss_pred EEEEEe--CCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEE
Q 004214 394 LVCTGS--QDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRAS 471 (768)
Q Consensus 394 ~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~ 471 (768)
.+++++ .|+.|++||+.+++++..+.+|...|++++|+|+|++|++|+.|++|+|||+.+..+.+..+.+...+....
T Consensus 334 ~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~~~~~~~~~~~s 413 (420)
T 4gga_A 334 ELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARRREREKASAAKSS 413 (420)
T ss_dssp EEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC--------------
T ss_pred eEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccchhhhccCCccccc
Confidence 988875 789999999999999999999999999999999999999999999999999988888777776666555444
Q ss_pred EEe
Q 004214 472 FLT 474 (768)
Q Consensus 472 ~s~ 474 (768)
|..
T Consensus 414 ~~~ 416 (420)
T 4gga_A 414 LIH 416 (420)
T ss_dssp ---
T ss_pred cCC
Confidence 443
No 79
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=4.1e-36 Score=322.14 Aligned_cols=292 Identities=15% Similarity=0.196 Sum_probs=238.1
Q ss_pred eecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceee--eeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEE
Q 004214 234 RLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCS--YVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRL 311 (768)
Q Consensus 234 ~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~--~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~i 311 (768)
...+|...|++++|+|.++.+||+|+.||.|+|||+.++... ..+.+|...|.+++ |.|.+..+|++|+.||+|++
T Consensus 114 ~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~--f~p~~~~~l~s~s~D~~v~i 191 (435)
T 4e54_B 114 KAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLK--FNPLNTNQFYASSMEGTTRL 191 (435)
T ss_dssp EEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEE--ECSSCTTEEEEECSSSCEEE
T ss_pred cCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEE--EeCCCCCEEEEEeCCCEEEE
Confidence 445678899999999988999999999999999999877644 34568999999998 77655556999999999999
Q ss_pred EeCCCceEEEeeec--ccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEc
Q 004214 312 WDSESRCCVGVGTG--HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVA 389 (768)
Q Consensus 312 wd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 389 (768)
||+.++........ +...+.+++|+|++. +|++|+.||.|++||++.. ....+..|...|++++|+
T Consensus 192 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~g~~dg~i~~wd~~~~-----------~~~~~~~h~~~v~~v~~~ 259 (435)
T 4e54_B 192 QDFKGNILRVFASSDTINIWFCSLDVSASSR-MVVTGDNVGNVILLNMDGK-----------ELWNLRMHKKKVTHVALN 259 (435)
T ss_dssp EETTSCEEEEEECCSSCSCCCCCEEEETTTT-EEEEECSSSBEEEEESSSC-----------BCCCSBCCSSCEEEEEEC
T ss_pred eeccCCceeEEeccCCCCccEEEEEECCCCC-EEEEEeCCCcEeeeccCcc-----------eeEEEecccceEEeeeec
Confidence 99988765544443 344678999999966 8999999999999998632 233456799999999999
Q ss_pred cCCC-EEEEEeCCCcEEEEeCCCCceEE---EEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCC
Q 004214 390 PNDS-LVCTGSQDRTACVWRLPDLVSVV---TFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTS 465 (768)
Q Consensus 390 ~~~~-~l~~~~~dg~i~i~d~~~~~~~~---~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~ 465 (768)
|++. ++++|+.|+.|++||+++.+... ...+|..+|++++|+|+|++|++++.||.|+|||+.++.+...+..|..
T Consensus 260 p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~ 339 (435)
T 4e54_B 260 PCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPH 339 (435)
T ss_dssp TTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCC
T ss_pred CCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccc
Confidence 9876 78899999999999998765433 3357999999999999999999999999999999999998888876653
Q ss_pred ------cEEEEEEEeCCCEEEEEe------------CCCcEEEEECCCCeEEEEec-cCCCcEEEE-EEcCCCCEEEEEe
Q 004214 466 ------SVLRASFLTRGAQIVSCG------------ADGLVKLWTVRTGECIATYD-KHEDKIWAL-AVGKKTEMFATGG 525 (768)
Q Consensus 466 ------~v~~~~~s~~~~~l~s~~------------~dg~i~iwd~~~~~~~~~~~-~~~~~v~~l-~~s~~~~~l~s~~ 525 (768)
.+....|+|++.++++++ .++.|++||..+++++..+. +|...|.++ +|+|+|++|++|+
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~ 419 (435)
T 4e54_B 340 RHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM 419 (435)
T ss_dssp CCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC
T ss_pred cccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc
Confidence 234566777777776654 23579999999999998874 677888887 6999999999876
Q ss_pred CCCcEEEEEcCCHHH
Q 004214 526 SDALVNLWHDSTAAE 540 (768)
Q Consensus 526 ~dg~v~vw~~~~~~~ 540 (768)
|+.|+||++.+++.
T Consensus 420 -d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 420 -GYHILIWSQQEART 433 (435)
T ss_dssp -SSEEEECCCC----
T ss_pred -CCcEEEEECCcCee
Confidence 88999999988754
No 80
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=6.6e-35 Score=295.36 Aligned_cols=251 Identities=23% Similarity=0.375 Sum_probs=215.2
Q ss_pred eeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCC--ceEEEeeecccCcEEEEEEecC-CCcEEEEEeCCCeE
Q 004214 276 YVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES--RCCVGVGTGHMGAVGAVAFSKK-LQNFLVSGSSDHTI 352 (768)
Q Consensus 276 ~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~~~dg~i 352 (768)
..+.+|...|.+++ +.+++.. |++|+.|++|++||+.. .+++..+.+|.++|.+++|+|+ ...+|++|+.|++|
T Consensus 3 ~~~~~h~~~V~~~~--~s~~g~~-las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v 79 (297)
T 2pm7_B 3 VIANAHNEMIHDAV--MDYYGKR-MATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV 79 (297)
T ss_dssp EECCSCSSCEEEEE--ECTTSSE-EEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEE
T ss_pred eeccCCcCceEEEE--ECCCCCE-EEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEE
Confidence 35678999999998 7777776 99999999999999974 4677888999999999999864 24589999999999
Q ss_pred EEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccC--CCEEEEEeCCCcEEEEeCCCCc--eEEEEeccCCCeEEE
Q 004214 353 KVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN--DSLVCTGSQDRTACVWRLPDLV--SVVTFRGHKRGIWSV 428 (768)
Q Consensus 353 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~v~~v 428 (768)
++||+..+. .........|...|.+++|+|+ +.+|++++.||.|++||++++. ....+.+|...|.++
T Consensus 80 ~iWd~~~~~--------~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~ 151 (297)
T 2pm7_B 80 MIWKEENGR--------WSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSA 151 (297)
T ss_dssp EEEEBSSSC--------BCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEE
T ss_pred EEEEcCCCc--------eEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceE
Confidence 999997531 1233455678999999999997 8999999999999999998763 246678999999999
Q ss_pred EEccC-------------CCEEEEeeCCCcEEEEeCCCCc----eeEEeecCCCcEEEEEEEeCC---CEEEEEeCCCcE
Q 004214 429 EFSPV-------------DQVVITASGDKTIKIWSISDGS----CLKTFEGHTSSVLRASFLTRG---AQIVSCGADGLV 488 (768)
Q Consensus 429 ~~s~~-------------~~~l~t~~~d~~i~iwd~~~~~----~~~~~~~~~~~v~~~~~s~~~---~~l~s~~~dg~i 488 (768)
+|+|+ +++|++|+.|++|++||++++. +...+.+|...|.+++|+|++ .+|++++.||+|
T Consensus 152 ~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v 231 (297)
T 2pm7_B 152 SWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTC 231 (297)
T ss_dssp EECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCE
T ss_pred eecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcE
Confidence 99997 5799999999999999998776 667889999999999999985 899999999999
Q ss_pred EEEECCCCe---EEEEe--ccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 004214 489 KLWTVRTGE---CIATY--DKHEDKIWALAVGKKTEMFATGGSDALVNLWHDST 537 (768)
Q Consensus 489 ~iwd~~~~~---~~~~~--~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~ 537 (768)
++||+.++. ....+ ..|...|++++|+|++++|++++.||.|++|+...
T Consensus 232 ~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 232 IIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp EEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred EEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 999998743 22233 46889999999999999999999999999999763
No 81
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.3e-34 Score=305.32 Aligned_cols=283 Identities=18% Similarity=0.298 Sum_probs=244.8
Q ss_pred eeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeC-CccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEE
Q 004214 242 ILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAG-HSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCV 320 (768)
Q Consensus 242 i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 320 (768)
+..+.|++ ..+++++.++.|++||+.++.....+.. |...|.+++ +.+++.. |++|+.||.|++||+.+++.+
T Consensus 96 ~~~~~~s~---~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~--~s~~~~~-l~~~~~dg~i~iwd~~~~~~~ 169 (401)
T 4aez_A 96 LNLLDWSN---LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVK--WSHDGSF-LSVGLGNGLVDIYDVESQTKL 169 (401)
T ss_dssp CBCEEECT---TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEE--ECTTSSE-EEEEETTSCEEEEETTTCCEE
T ss_pred EEEEeecC---CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEE--ECCCCCE-EEEECCCCeEEEEECcCCeEE
Confidence 44455543 4577788899999999999998877766 889999998 7676665 999999999999999999999
Q ss_pred EeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeC
Q 004214 321 GVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ 400 (768)
Q Consensus 321 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 400 (768)
..+.+|...|.+++|++. ++++++.||.|++||++.. .........|...|.+++|+|++++|++|+.
T Consensus 170 ~~~~~~~~~v~~~~~~~~---~l~~~~~dg~i~i~d~~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~ 237 (401)
T 4aez_A 170 RTMAGHQARVGCLSWNRH---VLSSGSRSGAIHHHDVRIA---------NHQIGTLQGHSSEVCGLAWRSDGLQLASGGN 237 (401)
T ss_dssp EEECCCSSCEEEEEEETT---EEEEEETTSEEEEEETTSS---------SCEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred EEecCCCCceEEEEECCC---EEEEEcCCCCEEEEecccC---------cceeeEEcCCCCCeeEEEEcCCCCEEEEEeC
Confidence 999999999999999653 8999999999999999742 2345667789999999999999999999999
Q ss_pred CCcEEEEeCCCCceEEEEeccCCCeEEEEEccCC-CEEEEee--CCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCC
Q 004214 401 DRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVD-QVVITAS--GDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGA 477 (768)
Q Consensus 401 dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~-~~l~t~~--~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~ 477 (768)
||.|++||+.+++....+.+|...|.+++|+|++ .++++++ .|+.|++||+.+++++..+. +...|.+++|+|+++
T Consensus 238 d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~ 316 (401)
T 4aez_A 238 DNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSK 316 (401)
T ss_dssp TSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSS
T ss_pred CCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCC
Confidence 9999999999999999999999999999999976 5666655 69999999999999999987 678899999999999
Q ss_pred EEEEE--eCCCcEEEEECCCCeEEE--EeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCHHHHHH
Q 004214 478 QIVSC--GADGLVKLWTVRTGECIA--TYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAEREE 543 (768)
Q Consensus 478 ~l~s~--~~dg~i~iwd~~~~~~~~--~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~ 543 (768)
+++++ +.||.|++||+.+++... .+.+|...|.+++|+|++++|++++.||.|++|++.+++....
T Consensus 317 ~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~ 386 (401)
T 4aez_A 317 EIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKR 386 (401)
T ss_dssp EEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC------
T ss_pred eEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccccc
Confidence 99994 489999999999976554 4678999999999999999999999999999999998765543
No 82
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=2.5e-35 Score=307.20 Aligned_cols=201 Identities=13% Similarity=0.096 Sum_probs=169.2
Q ss_pred ccCcEEEEEEecCCCcEE-EEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcE
Q 004214 326 HMGAVGAVAFSKKLQNFL-VSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTA 404 (768)
Q Consensus 326 ~~~~v~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i 404 (768)
+...+.+++|+|+|+.++ ++++.|++|++||+... ..... ..|...|.+++|+|+|+++++++.+ .+
T Consensus 132 ~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~----------~~~~~-~~~~~~V~~v~fspdg~~l~s~s~~-~~ 199 (365)
T 4h5i_A 132 ADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDL----------TEKFE-IETRGEVKDLHFSTDGKVVAYITGS-SL 199 (365)
T ss_dssp TTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTT----------EEEEE-EECSSCCCEEEECTTSSEEEEECSS-CE
T ss_pred cccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCC----------cEEEE-eCCCCceEEEEEccCCceEEeccce-eE
Confidence 445688999999988532 34457999999999743 23333 3477889999999999999998854 56
Q ss_pred EEEeCCCCceEEE--EeccCCCeEEEEEccCCCEEEEeeCCC----cEEEEeCCCCce----eEEeecCCCcEEEEEEEe
Q 004214 405 CVWRLPDLVSVVT--FRGHKRGIWSVEFSPVDQVVITASGDK----TIKIWSISDGSC----LKTFEGHTSSVLRASFLT 474 (768)
Q Consensus 405 ~i~d~~~~~~~~~--~~~~~~~v~~v~~s~~~~~l~t~~~d~----~i~iwd~~~~~~----~~~~~~~~~~v~~~~~s~ 474 (768)
.+|+..++..+.. ..+|...|.+++|+|+++++++++.|+ .+++|++..+.. ...+.+|...|++++|+|
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Sp 279 (365)
T 4h5i_A 200 EVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDM 279 (365)
T ss_dssp EEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECT
T ss_pred EEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECC
Confidence 7777777765543 456888999999999999999999887 688999877653 456778999999999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEe-ccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCH
Q 004214 475 RGAQIVSCGADGLVKLWTVRTGECIATY-DKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTA 538 (768)
Q Consensus 475 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~ 538 (768)
+|++|++|+.||+|+|||+.+++++.++ .+|..+|++++|+|||++||+|+.|++|+||++.+.
T Consensus 280 dg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 280 KGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp TSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred CCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 9999999999999999999999999986 789999999999999999999999999999998653
No 83
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=1.5e-34 Score=310.19 Aligned_cols=279 Identities=28% Similarity=0.559 Sum_probs=248.0
Q ss_pred cccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCC
Q 004214 236 VGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSE 315 (768)
Q Consensus 236 ~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~ 315 (768)
.++...|.++.+ +++++++|+.+|.|++||+.+++....+.+|...|.++. + ++. ++++|+.||.|++||+.
T Consensus 130 ~~~~~~v~~~~~---d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~--~--~~~-~l~sg~~dg~i~vwd~~ 201 (435)
T 1p22_A 130 SETSKGVYCLQY---DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQ--Y--DER-VIITGSSDSTVRVWDVN 201 (435)
T ss_dssp CSSCCCEEEEEC---CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEE--C--CSS-EEEEEETTSCEEEEESS
T ss_pred cCCCCcEEEEEE---CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEE--E--CCC-EEEEEcCCCeEEEEECC
Confidence 345567888876 678999999999999999999999999999999999997 3 444 59999999999999999
Q ss_pred CceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEE
Q 004214 316 SRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLV 395 (768)
Q Consensus 316 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 395 (768)
+++.+..+.+|...|.+++|+++ ++++|+.||.|++||+.... .........+|...|.++++ +++++
T Consensus 202 ~~~~~~~~~~h~~~v~~l~~~~~---~l~s~s~dg~i~vwd~~~~~-------~~~~~~~~~~~~~~v~~~~~--~~~~l 269 (435)
T 1p22_A 202 TGEMLNTLIHHCEAVLHLRFNNG---MMVTCSKDRSIAVWDMASPT-------DITLRRVLVGHRAAVNVVDF--DDKYI 269 (435)
T ss_dssp SCCEEEEECCCCSCEEEEECCTT---EEEEEETTSCEEEEECSSSS-------CCEEEEEECCCSSCEEEEEE--ETTEE
T ss_pred CCcEEEEEcCCCCcEEEEEEcCC---EEEEeeCCCcEEEEeCCCCC-------CceeeeEecCCCCcEEEEEe--CCCEE
Confidence 99999999999999999999754 89999999999999998543 12233566789999999999 78899
Q ss_pred EEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeC
Q 004214 396 CTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTR 475 (768)
Q Consensus 396 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~ 475 (768)
++|+.||.|++||+.+++.+..+.+|...|.++.|+ ++++++|+.||.|++||+.+++++..+.+|...|.+++| +
T Consensus 270 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~ 345 (435)
T 1p22_A 270 VSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--D 345 (435)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--C
T ss_pred EEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--c
Confidence 999999999999999999999999999999999995 789999999999999999999999999999999999998 7
Q ss_pred CCEEEEEeCCCcEEEEECCCCe---------EEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCHHH
Q 004214 476 GAQIVSCGADGLVKLWTVRTGE---------CIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAE 540 (768)
Q Consensus 476 ~~~l~s~~~dg~i~iwd~~~~~---------~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~~~ 540 (768)
+.+|++|+.||.|++||+.+++ ++..+.+|.+.|++++| ++.+|++|+.||.|++|++.+...
T Consensus 346 ~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~ 417 (435)
T 1p22_A 346 NKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPA 417 (435)
T ss_dssp SSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC------
T ss_pred CCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCC
Confidence 8899999999999999998776 89999999999999999 788999999999999999987654
No 84
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.6e-36 Score=315.38 Aligned_cols=298 Identities=13% Similarity=0.136 Sum_probs=228.6
Q ss_pred EEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCC--eeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 004214 25 YFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK--KCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWD 102 (768)
Q Consensus 25 ~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~--~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd 102 (768)
.+..|.+.|++++|+|++++ |++|+.||.|+|||+.++ +++..+.+|...|++++|+|++++|++++.|+.|++||
T Consensus 6 ~~~~~~~~v~~~~~s~~g~~--l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd 83 (377)
T 3dwl_C 6 VLHILPKPSYEHAFNSQRTE--FVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYE 83 (377)
T ss_dssp EEEECSSCCSCCEECSSSSE--EECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC-
T ss_pred eEecCCCcEEEEEECCCCCE--EEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence 34557889999999999987 999999999999999988 78889999999999999999999999999999999999
Q ss_pred CCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceee
Q 004214 103 LRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTI 182 (768)
Q Consensus 103 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~ 182 (768)
+.+++..
T Consensus 84 ~~~~~~~------------------------------------------------------------------------- 90 (377)
T 3dwl_C 84 KRPDGTW------------------------------------------------------------------------- 90 (377)
T ss_dssp -----CC-------------------------------------------------------------------------
T ss_pred cCCCCce-------------------------------------------------------------------------
Confidence 8654200
Q ss_pred cccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCC
Q 004214 183 SFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIE 262 (768)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~ 262 (768)
T Consensus 91 -------------------------------------------------------------------------------- 90 (377)
T 3dwl_C 91 -------------------------------------------------------------------------------- 90 (377)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCce---EEEeeec-ccCcEEEEEEecC
Q 004214 263 QVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC---CVGVGTG-HMGAVGAVAFSKK 338 (768)
Q Consensus 263 ~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~-~~~~v~~~~~~~~ 338 (768)
.....+.+|...|.++. +.+++.. |++|+.||.|++||+.++. ....+.. |...|.+++|+|+
T Consensus 91 ----------~~~~~~~~~~~~v~~~~--~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 157 (377)
T 3dwl_C 91 ----------KQTLVLLRLNRAATFVR--WSPNEDK-FAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPN 157 (377)
T ss_dssp ----------CCEEECCCCSSCEEEEE--CCTTSSC-CEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTT
T ss_pred ----------eeeeEecccCCceEEEE--ECCCCCE-EEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCC
Confidence 00113344666777776 5566655 8889999999999998876 3566666 9999999999999
Q ss_pred CCcEEEEEeCCCeEEEEeCCCCCCCCccc--------cccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 004214 339 LQNFLVSGSSDHTIKVWSFDGLSDDAEQP--------MNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLP 410 (768)
Q Consensus 339 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--------~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~ 410 (768)
+. ++++++.|+.|++||+.......... ........+ .|...|.+++|+|++++|++++.||.|++||+.
T Consensus 158 ~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~ 235 (377)
T 3dwl_C 158 NV-LLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPS 235 (377)
T ss_dssp SS-EEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEEC
T ss_pred CC-EEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence 65 89999999999999986432111100 012233333 899999999999999999999999999999999
Q ss_pred CCce----EEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCc--ee---------------------------
Q 004214 411 DLVS----VVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGS--CL--------------------------- 457 (768)
Q Consensus 411 ~~~~----~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~--~~--------------------------- 457 (768)
+++. +..+.+|..+|.+++|+|++++|++++.++.+ +|+..... ..
T Consensus 236 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (377)
T 3dwl_C 236 APEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGP 314 (377)
T ss_dssp STTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC---
T ss_pred CCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccc
Confidence 9887 78889999999999999999999999876655 77654211 00
Q ss_pred -------EEe----------------ecCCCcEEEEEEEeCC-C---EEEEEeCCCcEEEEEC
Q 004214 458 -------KTF----------------EGHTSSVLRASFLTRG-A---QIVSCGADGLVKLWTV 493 (768)
Q Consensus 458 -------~~~----------------~~~~~~v~~~~~s~~~-~---~l~s~~~dg~i~iwd~ 493 (768)
..+ ..|...|+++.+.+.. . .|+||+.||.|++||+
T Consensus 315 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 315 VSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp ----------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 111 1399999999976643 3 6999999999999985
No 85
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.7e-34 Score=304.67 Aligned_cols=294 Identities=22% Similarity=0.299 Sum_probs=240.6
Q ss_pred EEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecC-ccceeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 004214 26 FKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDK-HFSRVTSMAITSDGSTLISAGRDKVVNLWDLR 104 (768)
Q Consensus 26 l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~-h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~ 104 (768)
..+|...+.+.++++++.. +++++.||.|++||+.+++....+.. |...|++++|+|++++|++++.||.|++||+.
T Consensus 87 ~~~~~~~~~~~~~~~s~~~--l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 164 (401)
T 4aez_A 87 APGIIDDYYLNLLDWSNLN--VVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVE 164 (401)
T ss_dssp CTTCCCCTTCBCEEECTTS--EEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred CCCCcCCceEEEEeecCCC--EEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECc
Confidence 3366665444444444455 88899999999999999999888776 88999999999999999999999999999998
Q ss_pred CCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeecc
Q 004214 105 DYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISF 184 (768)
Q Consensus 105 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~ 184 (768)
+++.+..+
T Consensus 165 ~~~~~~~~------------------------------------------------------------------------ 172 (401)
T 4aez_A 165 SQTKLRTM------------------------------------------------------------------------ 172 (401)
T ss_dssp TCCEEEEE------------------------------------------------------------------------
T ss_pred CCeEEEEe------------------------------------------------------------------------
Confidence 76533222
Q ss_pred cccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcE
Q 004214 185 EMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQV 264 (768)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i 264 (768)
.+|...|.+++| ++..+++++.+|.|
T Consensus 173 ---------------------------------------------------~~~~~~v~~~~~---~~~~l~~~~~dg~i 198 (401)
T 4aez_A 173 ---------------------------------------------------AGHQARVGCLSW---NRHVLSSGSRSGAI 198 (401)
T ss_dssp ---------------------------------------------------CCCSSCEEEEEE---ETTEEEEEETTSEE
T ss_pred ---------------------------------------------------cCCCCceEEEEE---CCCEEEEEcCCCCE
Confidence 245556777777 34699999999999
Q ss_pred EEEECC-CceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEE
Q 004214 265 QVYDLS-SMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFL 343 (768)
Q Consensus 265 ~i~d~~-~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 343 (768)
++||+. .......+.+|...|.++. +.+++.. |++|+.||.|++||+.++..+..+..|...|.+++|+|++..++
T Consensus 199 ~i~d~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~-l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll 275 (401)
T 4aez_A 199 HHHDVRIANHQIGTLQGHSSEVCGLA--WRSDGLQ-LASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLL 275 (401)
T ss_dssp EEEETTSSSCEEEEEECCSSCEEEEE--ECTTSSE-EEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEE
T ss_pred EEEecccCcceeeEEcCCCCCeeEEE--EcCCCCE-EEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEE
Confidence 999998 5667778899999999998 6676665 99999999999999999999999999999999999999988888
Q ss_pred EEEe--CCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEe--CCCcEEEEeCCCCceE--EE
Q 004214 344 VSGS--SDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGS--QDRTACVWRLPDLVSV--VT 417 (768)
Q Consensus 344 ~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~dg~i~i~d~~~~~~~--~~ 417 (768)
++++ .|+.|++||+..+. ..... .+...|.+++|+|+++++++++ .||.|++||+.++... ..
T Consensus 276 ~~~~gs~d~~i~i~d~~~~~----------~~~~~-~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~ 344 (401)
T 4aez_A 276 ATGGGTMDKQIHFWNAATGA----------RVNTV-DAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVD 344 (401)
T ss_dssp EEECCTTTCEEEEEETTTCC----------EEEEE-ECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEE
T ss_pred EEecCCCCCEEEEEECCCCC----------EEEEE-eCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEE
Confidence 8876 79999999998542 22222 4677899999999999999954 8999999999986544 44
Q ss_pred EeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEee
Q 004214 418 FRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFE 461 (768)
Q Consensus 418 ~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~ 461 (768)
+.+|...|.+++|+|++++|++++.||.|++|++.+++.+....
T Consensus 345 ~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~~ 388 (401)
T 4aez_A 345 IPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRPI 388 (401)
T ss_dssp EECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC--------
T ss_pred ecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccccccc
Confidence 77899999999999999999999999999999999988776554
No 86
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.4e-36 Score=314.44 Aligned_cols=285 Identities=21% Similarity=0.208 Sum_probs=231.3
Q ss_pred ccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCc--eeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeC
Q 004214 237 GYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSM--SCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDS 314 (768)
Q Consensus 237 ~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~--~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~ 314 (768)
.+.++|.+++|++ +++++++++.++.|++||+.++ .....+.+|...|.+++ +.+++.. |++|+.||.|++||+
T Consensus 9 ~~~~~v~~~~~s~-~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~--~s~~~~~-l~s~s~d~~v~vwd~ 84 (377)
T 3dwl_C 9 ILPKPSYEHAFNS-QRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVD--WAPKSNR-IVTCSQDRNAYVYEK 84 (377)
T ss_dssp ECSSCCSCCEECS-SSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEE--ECTTTCC-EEEEETTSSEEEC--
T ss_pred cCCCcEEEEEECC-CCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEE--EeCCCCE-EEEEeCCCeEEEEEc
Confidence 3567899999996 7789999999999999999988 78888999999999998 7777665 999999999999999
Q ss_pred CCce---EEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeec-cCCCeEEEEEcc
Q 004214 315 ESRC---CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAA-HGKDINSLAVAP 390 (768)
Q Consensus 315 ~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~s~ 390 (768)
.++. ....+.+|...|.+++|+|++. +|++++.|+.|++||+..... ......+.. |...|.+++|+|
T Consensus 85 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~-------~~~~~~~~~~h~~~v~~~~~~~ 156 (377)
T 3dwl_C 85 RPDGTWKQTLVLLRLNRAATFVRWSPNED-KFAVGSGARVISVCYFEQEND-------WWVSKHLKRPLRSTILSLDWHP 156 (377)
T ss_dssp ----CCCCEEECCCCSSCEEEEECCTTSS-CCEEEESSSCEEECCC------------CCCCEEECSSCCSCEEEEEECT
T ss_pred CCCCceeeeeEecccCCceEEEEECCCCC-EEEEEecCCeEEEEEECCccc-------ceeeeEeecccCCCeEEEEEcC
Confidence 9877 6777788999999999999866 799999999999999985421 112334445 899999999999
Q ss_pred CCCEEEEEeCCCcEEEEeCC------------------CCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCC
Q 004214 391 NDSLVCTGSQDRTACVWRLP------------------DLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSIS 452 (768)
Q Consensus 391 ~~~~l~~~~~dg~i~i~d~~------------------~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~ 452 (768)
++++|++++.||.|++||+. .++.+..+ +|...|++++|+|++++|++++.||.|++||+.
T Consensus 157 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~ 235 (377)
T 3dwl_C 157 NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPS 235 (377)
T ss_dssp TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEEC
T ss_pred CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence 99999999999999999985 34455666 899999999999999999999999999999999
Q ss_pred CCce----eEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCe------------------------------E
Q 004214 453 DGSC----LKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE------------------------------C 498 (768)
Q Consensus 453 ~~~~----~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~------------------------------~ 498 (768)
++++ +..+.+|...|.+++|+|++++|++++.++.+ +|+...+. .
T Consensus 236 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (377)
T 3dwl_C 236 APEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGP 314 (377)
T ss_dssp STTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC---
T ss_pred CCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccc
Confidence 9988 88899999999999999999999998877665 66654111 0
Q ss_pred E------EEe----------------ccCCCcEEEEEEcCCC-C---EEEEEeCCCcEEEEEc
Q 004214 499 I------ATY----------------DKHEDKIWALAVGKKT-E---MFATGGSDALVNLWHD 535 (768)
Q Consensus 499 ~------~~~----------------~~~~~~v~~l~~s~~~-~---~l~s~~~dg~v~vw~~ 535 (768)
+ ..+ ..|...|+++++.+.. . .|+|||.||.|++|++
T Consensus 315 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 315 VSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp ----------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 0 011 1299999999976543 3 6999999999999985
No 87
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.1e-34 Score=302.52 Aligned_cols=202 Identities=13% Similarity=0.126 Sum_probs=166.3
Q ss_pred ccceEEEeeeeecCCCEEE-EEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCC
Q 004214 282 SEIVLCLDTCALSSGKILI-VTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGL 360 (768)
Q Consensus 282 ~~~v~~l~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 360 (768)
...+.+++ ++|++..++ ++++.|++|++||+.+++++..+. |.+.|.+++|+|+++ ++++++.++ +.+|+...+
T Consensus 133 ~~~~~~v~--fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~-~l~s~s~~~-~~~~~~~~~ 207 (365)
T 4h5i_A 133 DDYTKLVY--ISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGK-VVAYITGSS-LEVISTVTG 207 (365)
T ss_dssp TCCEEEEE--ECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSS-EEEEECSSC-EEEEETTTC
T ss_pred ccCEEEEE--EcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCc-eEEecccee-EEEEEeccC
Confidence 34456665 778887632 344578999999999999988876 778899999999977 788887655 555555432
Q ss_pred CCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCC----cEEEEeCCCCce----EEEEeccCCCeEEEEEcc
Q 004214 361 SDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDR----TACVWRLPDLVS----VVTFRGHKRGIWSVEFSP 432 (768)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg----~i~i~d~~~~~~----~~~~~~~~~~v~~v~~s~ 432 (768)
..........|...|.+++|+|+++++++++.|+ .+++|++..... ...+.+|..+|++++|+|
T Consensus 208 --------~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Sp 279 (365)
T 4h5i_A 208 --------SCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDM 279 (365)
T ss_dssp --------CEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECT
T ss_pred --------cceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECC
Confidence 1122334456888899999999999999999887 688899876643 456778999999999999
Q ss_pred CCCEEEEeeCCCcEEEEeCCCCceeEEe-ecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCC
Q 004214 433 VDQVVITASGDKTIKIWSISDGSCLKTF-EGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTG 496 (768)
Q Consensus 433 ~~~~l~t~~~d~~i~iwd~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 496 (768)
+|++||+|+.|++|+|||+.+++++.++ .+|..+|++++|+|||++|++|+.|++|+||++..+
T Consensus 280 dg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 280 KGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp TSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred CCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 9999999999999999999999999885 789999999999999999999999999999999643
No 88
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=5.3e-33 Score=285.12 Aligned_cols=277 Identities=21% Similarity=0.351 Sum_probs=240.1
Q ss_pred eeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeee--CCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceE
Q 004214 242 ILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLA--GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC 319 (768)
Q Consensus 242 i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~--~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 319 (768)
...++|++. ++||+|. |+.|++||+.++++...+. +|...|.+++ +.++++. +++|+.||.|++||+.++++
T Consensus 28 ~~~l~WS~~--~~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~--~~~~~~~-l~sgs~Dg~v~iw~~~~~~~ 101 (318)
T 4ggc_A 28 LNLVDWSSG--NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVA--WIKEGNY-LAVGTSSAEVQLWDVQQQKR 101 (318)
T ss_dssp CBCEEECTT--SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEE--ECTTSSE-EEEEETTSEEEEEETTTTEE
T ss_pred ceEEEECCC--CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEE--ECCCCCE-EEEEECCCcEEEeecCCcee
Confidence 356888754 3777765 7999999999999887664 6778899997 7777775 99999999999999999999
Q ss_pred EEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEe
Q 004214 320 VGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGS 399 (768)
Q Consensus 320 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 399 (768)
+..+.+|...+.++.+.+. ++++++.++.+++|+.... .........|...+..+.++++++++++++
T Consensus 102 ~~~~~~h~~~~~~~~~~~~---~l~s~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~ 169 (318)
T 4ggc_A 102 LRNMTSHSARVGSLSWNSY---ILSSGSRSGHIHHHDVRVA---------EHHVATLSGHSQEVCGLRWAPDGRHLASGG 169 (318)
T ss_dssp EEEEECCSSCEEEEEEETT---EEEEEETTSEEEEEETTSS---------SCEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred EEEecCccceEEEeecCCC---EEEEEecCCceEeeecCCC---------ceeEEEEcCccCceEEEEEcCCCCEEEEEe
Confidence 9999999999988777654 8999999999999998743 235566788999999999999999999999
Q ss_pred CCCcEEEEeCCCCc----eEEEEeccCCCeEEEEEccCCCE---EEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEE
Q 004214 400 QDRTACVWRLPDLV----SVVTFRGHKRGIWSVEFSPVDQV---VITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASF 472 (768)
Q Consensus 400 ~dg~i~i~d~~~~~----~~~~~~~~~~~v~~v~~s~~~~~---l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 472 (768)
.||.|++||+.+++ .......+...|.+++++|++.. +++++.+++|++||........... +...+..+.|
T Consensus 170 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~ 248 (318)
T 4ggc_A 170 NDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILW 248 (318)
T ss_dssp TTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEE
T ss_pred cCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-ceeeeeeeee
Confidence 99999999998765 34556678889999999997653 3467788999999998888776665 7788999999
Q ss_pred EeCCCEEEEEe--CCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 004214 473 LTRGAQIVSCG--ADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDST 537 (768)
Q Consensus 473 s~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~ 537 (768)
+|++..+++++ .||.|++||+.+++++.++.+|.+.|++++|+|++++|+|||.||.|+||++.+
T Consensus 249 ~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 249 SPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 315 (318)
T ss_dssp ETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred cccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 99999887765 799999999999999999999999999999999999999999999999999864
No 89
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=100.00 E-value=2.1e-32 Score=325.43 Aligned_cols=489 Identities=10% Similarity=0.066 Sum_probs=345.8
Q ss_pred EEeecCCCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCC------CcEEEEECCCCeeEEEecCccce
Q 004214 3 ALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDD------ATVRVWDLLAKKCVATLDKHFSR 76 (768)
Q Consensus 3 latg~~dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~d------g~I~iWd~~~~~~~~~l~~h~~~ 76 (768)
||.++. +.|.+|++.++. ...+.+|.+.|.+++|||||++ ||+++.+ ..|++||+.+++ ...+..|...
T Consensus 27 iaf~~~-~~l~~~~~~gg~-~~~lt~~~~~v~~~~~SPDG~~--la~~s~~~~~~~~~~i~~~d~~~g~-~~~lt~~~~~ 101 (1045)
T 1k32_A 27 IIFVCC-DDLWEHDLKSGS-TRKIVSNLGVINNARFFPDGRK--IAIRVMRGSSLNTADLYFYNGENGE-IKRITYFSGK 101 (1045)
T ss_dssp EEEEET-TEEEEEETTTCC-EEEEECSSSEEEEEEECTTSSE--EEEEEEESTTCCEEEEEEEETTTTE-EEECCCCCEE
T ss_pred EEEEEC-CcEEEEECCCCc-EEEeeeCCCcccCeEECCCCCE--EEEEEeeccCCCCCeEEEEECCCCC-eEEcccCCCc
Confidence 444443 799999999887 5678899999999999999998 6666433 479999998887 5778889988
Q ss_pred e-------EEEEEcCCCCEEEEEeCC------CeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccch----
Q 004214 77 V-------TSMAITSDGSTLISAGRD------KVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQ---- 139 (768)
Q Consensus 77 V-------~~l~fs~d~~~L~s~~~d------g~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~---- 139 (768)
+ .+++|||||+.+++++.+ ..|.+|++.+++........ ...+.|+| | .+.........
T Consensus 102 ~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~--~~~~~~sp-G-~l~~~~~~~~~~~~~ 177 (1045)
T 1k32_A 102 STGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGP--ATHILFAD-G-RRVIGRNTFELPHWK 177 (1045)
T ss_dssp EETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCS--CSEEEEET-T-EEEEEESCSCCTTST
T ss_pred ccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCC--cceeeeCC-C-EEEEeccCCCccccc
Confidence 8 999999999977777754 46888888887654332221 23444665 4 11110000000
Q ss_pred --------------h--h----------hhcccCCcceEEEEeeCCcEEEEEEcCC--ceeeeecCCceeecccccCccc
Q 004214 140 --------------Q--T----------IKKKRRSLEIHFITVGERGIVRMWNADS--ACLYEQKSSDVTISFEMDDSKR 191 (768)
Q Consensus 140 --------------~--~----------~~~~~~~~~~~~~~~~~~g~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~ 191 (768)
. . .....-.....+++++.+|.+.+|.+.. +...... ...
T Consensus 178 ~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g~~~~~l~------------~~~ 245 (1045)
T 1k32_A 178 GYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHT------------SFT 245 (1045)
T ss_dssp TCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEECC------------CCC
T ss_pred cccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCCEEEEEEeccCceEEEEEeCCCCcceEec------------CCC
Confidence 0 0 0000000123556667778888887643 2111110 011
Q ss_pred ceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEE-----EeeecccCCceeEEEEecCCCCEEEEEeCCCcEEE
Q 004214 192 GFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELIL-----SKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQV 266 (768)
Q Consensus 192 ~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~-----~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i 266 (768)
.+....++|++..++.+ .++.+++|+...... ..+.. ......+...+..++|++++++.+++++ ++.+.+
T Consensus 246 ~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~~l--~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~ 321 (1045)
T 1k32_A 246 DYYPRHLNTDGRRILFS-KGGSIYIFNPDTEKI--EKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFI 321 (1045)
T ss_dssp SSCEEEEEESSSCEEEE-ETTEEEEECTTTCCE--EECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEE
T ss_pred CcceeeEcCCCCEEEEE-eCCEEEEecCCceEe--eeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEE
Confidence 34456888999888776 689999998732110 00000 0001123457889999834677777776 689999
Q ss_pred EECCCceeeeeeeCCcc-ceEEEeeeeecCCCEEEEEEeCCCeEE-EEeCCCceEEEeeecccCcEEEEEEecCCCcEEE
Q 004214 267 YDLSSMSCSYVLAGHSE-IVLCLDTCALSSGKILIVTGSKDNSVR-LWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLV 344 (768)
Q Consensus 267 ~d~~~~~~~~~~~~~~~-~v~~l~~~~~~~~~~~l~~~~~dg~i~-iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 344 (768)
|+..++... .+..|.. .+.++. ++ ++.. ++.++.++.+. +|+..++...... +|...+..++|+|+|+ +|+
T Consensus 322 ~~~~~~~~~-~~~~~~~~~~~~~~--~s-dg~~-l~~~s~~~~l~~~~d~~~~~~~~l~-~~~~~~~~~~~SpDG~-~la 394 (1045)
T 1k32_A 322 QDVSGTYVL-KVPEPLRIRYVRRG--GD-TKVA-FIHGTREGDFLGIYDYRTGKAEKFE-ENLGNVFAMGVDRNGK-FAV 394 (1045)
T ss_dssp ECTTSSBEE-ECSCCSCEEEEEEC--SS-SEEE-EEEEETTEEEEEEEETTTCCEEECC-CCCCSEEEEEECTTSS-EEE
T ss_pred EcCCCCceE-EccCCCcceEEeee--Ec-CCCe-EEEEECCCceEEEEECCCCCceEec-CCccceeeeEECCCCC-EEE
Confidence 999887655 3556666 778876 55 5554 77777788898 9999887765544 7888999999999977 788
Q ss_pred EEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCC----------cEEEEeCCCCce
Q 004214 345 SGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDR----------TACVWRLPDLVS 414 (768)
Q Consensus 345 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg----------~i~i~d~~~~~~ 414 (768)
+++.++.|++||+..+ ........|...+.+++|+|||++|++++.++ .|++||+.+++
T Consensus 395 ~~~~~~~v~~~d~~tg----------~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~- 463 (1045)
T 1k32_A 395 VANDRFEIMTVDLETG----------KPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK- 463 (1045)
T ss_dssp EEETTSEEEEEETTTC----------CEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-
T ss_pred EECCCCeEEEEECCCC----------ceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-
Confidence 9999999999999754 23344457888899999999999999887654 89999999887
Q ss_pred EEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCc---------------------------------------
Q 004214 415 VVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGS--------------------------------------- 455 (768)
Q Consensus 415 ~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~--------------------------------------- 455 (768)
...+..|...+.+++|+|+|+.|++++.++...+|+.....
T Consensus 464 ~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 543 (1045)
T 1k32_A 464 IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLN 543 (1045)
T ss_dssp EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCT
T ss_pred EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCcccccccccccc
Confidence 66777888889999999999999999987777776643221
Q ss_pred ----eeEEeecCCCcEEEEEEEeCCCEEEE-------------EeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCC
Q 004214 456 ----CLKTFEGHTSSVLRASFLTRGAQIVS-------------CGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKT 518 (768)
Q Consensus 456 ----~~~~~~~~~~~v~~~~~s~~~~~l~s-------------~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~ 518 (768)
.+..+..|...+..+.++|+|.++++ .+..+.|.+||+.+++..... ..+.+++|||||
T Consensus 544 g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~----~~v~~~~~S~DG 619 (1045)
T 1k32_A 544 DMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK----NNLTDLRLSADR 619 (1045)
T ss_dssp TGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE----EEEEEEEECTTS
T ss_pred CHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEEee----cCcceEEECCCC
Confidence 12344456778899999999987875 122457889999888754332 668899999999
Q ss_pred CEEEEEeCCCcEEEEEcCCHH
Q 004214 519 EMFATGGSDALVNLWHDSTAA 539 (768)
Q Consensus 519 ~~l~s~~~dg~v~vw~~~~~~ 539 (768)
++|++++.+ .+++|+..+++
T Consensus 620 ~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 620 KTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp CEEEEEETT-SCEEEEESSCT
T ss_pred CEEEEEcCC-cEEEEeCccCc
Confidence 999999877 79999998764
No 90
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=4.7e-34 Score=296.28 Aligned_cols=282 Identities=15% Similarity=0.143 Sum_probs=235.8
Q ss_pred EEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCe---eEEEecCccceeEEEEEcCCCC-EEEEEeCCCeEE
Q 004214 24 HYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK---CVATLDKHFSRVTSMAITSDGS-TLISAGRDKVVN 99 (768)
Q Consensus 24 ~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~---~~~~l~~h~~~V~~l~fs~d~~-~L~s~~~dg~i~ 99 (768)
....+|.+.|++++|+|+++. |++|+.||.|+|||+.+++ ....+.+|...|++++|+|+++ +|++++.||.|+
T Consensus 5 ~~~~~h~~~v~~~~~s~~~~~--l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 82 (342)
T 1yfq_A 5 QIEQAPKDYISDIKIIPSKSL--LLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEIL 82 (342)
T ss_dssp ECSSCCSSCEEEEEEEGGGTE--EEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred ecccCCCCcEEEEEEcCCCCE--EEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEE
Confidence 344689999999999999887 9999999999999998876 3455668999999999999999 999999999999
Q ss_pred EEEC-CCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCC
Q 004214 100 LWDL-RDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSS 178 (768)
Q Consensus 100 vWd~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~ 178 (768)
+||+ .+++.
T Consensus 83 ~wd~~~~~~~---------------------------------------------------------------------- 92 (342)
T 1yfq_A 83 KVDLIGSPSF---------------------------------------------------------------------- 92 (342)
T ss_dssp EECSSSSSSE----------------------------------------------------------------------
T ss_pred EEEeccCCce----------------------------------------------------------------------
Confidence 9998 65421
Q ss_pred ceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEE
Q 004214 179 DVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVA 258 (768)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 258 (768)
T Consensus 93 -------------------------------------------------------------------------------- 92 (342)
T 1yfq_A 93 -------------------------------------------------------------------------------- 92 (342)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eCCCcEEEEECCCceeeeeeeC--CccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCC---------ceEEEeeeccc
Q 004214 259 TNIEQVQVYDLSSMSCSYVLAG--HSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES---------RCCVGVGTGHM 327 (768)
Q Consensus 259 ~~~~~i~i~d~~~~~~~~~~~~--~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~---------~~~~~~~~~~~ 327 (768)
..+.+ |...|.++. +.+ +.. +++++.||.|++||+.+ ++++..+. |.
T Consensus 93 -----------------~~~~~~~~~~~v~~l~--~~~-~~~-l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~ 150 (342)
T 1yfq_A 93 -----------------QALTNNEANLGICRIC--KYG-DDK-LIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VK 150 (342)
T ss_dssp -----------------EECBSCCCCSCEEEEE--EET-TTE-EEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SC
T ss_pred -----------------EeccccCCCCceEEEE--eCC-CCE-EEEEcCCCeEEEEcccccccccccccCCeeeEEe-eC
Confidence 01223 555666665 445 443 77788888888888776 55555555 88
Q ss_pred CcEEEEEEecCCCcEEEEEeCCCeEEEEeCCC-CCCCCccccccceeeEeeccCCCeEEEEEcc-CCCEEEEEeCCCcEE
Q 004214 328 GAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDG-LSDDAEQPMNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQDRTAC 405 (768)
Q Consensus 328 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~ 405 (768)
..|.+++|+|++ +++++.|+.|++||+.. .. .........|...+.+++|+| +++++++++.||.|+
T Consensus 151 ~~v~~~~~~~~~---l~~~~~d~~i~i~d~~~~~~--------~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~ 219 (342)
T 1yfq_A 151 NKIFTMDTNSSR---LIVGMNNSQVQWFRLPLCED--------DNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVA 219 (342)
T ss_dssp CCEEEEEECSSE---EEEEESTTEEEEEESSCCTT--------CCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEE
T ss_pred CceEEEEecCCc---EEEEeCCCeEEEEECCcccc--------ccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEE
Confidence 999999999874 89999999999999985 32 112334456788999999999 999999999999999
Q ss_pred EEeCCCC------ceEEEEeccCC---------CeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecC-CCcEEE
Q 004214 406 VWRLPDL------VSVVTFRGHKR---------GIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGH-TSSVLR 469 (768)
Q Consensus 406 i~d~~~~------~~~~~~~~~~~---------~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~-~~~v~~ 469 (768)
+|+++.. +....+.+|.. +|++++|+|++++|++++.||.|++||+.+++++..+.+| ..+|++
T Consensus 220 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~ 299 (342)
T 1yfq_A 220 VEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVK 299 (342)
T ss_dssp EEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEE
T ss_pred EEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceE
Confidence 9999887 78888888865 9999999999999999999999999999999999999998 999999
Q ss_pred EEEEeCCCEEEEEeCCCc-EEEEE
Q 004214 470 ASFLTRGAQIVSCGADGL-VKLWT 492 (768)
Q Consensus 470 ~~~s~~~~~l~s~~~dg~-i~iwd 492 (768)
++ |++++|++++.||. .+.|.
T Consensus 300 ~~--~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 300 IA--CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp EE--ECSSEEEEEEECTHHHHCSS
T ss_pred ec--CCCCeEEEEecCCccccccc
Confidence 99 99999999999998 55554
No 91
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.8e-36 Score=312.38 Aligned_cols=319 Identities=11% Similarity=0.071 Sum_probs=250.9
Q ss_pred cCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEEECCCCe
Q 004214 28 GHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYS 107 (768)
Q Consensus 28 gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~~~~ 107 (768)
.-...|.+++|+|||+. +||++.|++|+ |...++. +++|...|.+++|+|+| .++.+.+|+.+...
T Consensus 13 ~~~~~v~sv~~SpDG~~--iASas~D~TV~--d~~~~~~---l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~ 78 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTL--YLTTFPDISIG--QPKYAKD---INCNSKNLFHVKEFPLE-------FENKLDFELAQQNG 78 (588)
T ss_dssp CCSSSSCCEEECTTSCE--EEECSSSEEEE--EECCCSC---CSSBGGGTEEEEEECCC-------CCCTTTTSCCCSSC
T ss_pred HhhccEEEEEECCCCCE--EEEEcCCceee--cccccce---ecCCCccEEEEEECCCC-------CcceEEEEeCCCce
Confidence 35678999999999998 99999999999 7655554 47999999999999999 34444444332111
Q ss_pred eeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeeccccc
Q 004214 108 CKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMD 187 (768)
Q Consensus 108 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~ 187 (768)
.+
T Consensus 79 ---~~--------------------------------------------------------------------------- 80 (588)
T 2j04_A 79 ---LL--------------------------------------------------------------------------- 80 (588)
T ss_dssp ---SS---------------------------------------------------------------------------
T ss_pred ---Ee---------------------------------------------------------------------------
Confidence 00
Q ss_pred CcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEE
Q 004214 188 DSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVY 267 (768)
Q Consensus 188 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~ 267 (768)
..++.+.|.+++|+| ++..+|+++.+|.|++|
T Consensus 81 -----------------------------------------------~~~~~~~V~~vawSP-dG~~LAs~s~dg~V~iw 112 (588)
T 2j04_A 81 -----------------------------------------------NSQPVCYPRVCKPSP-IDDWMAVLSNNGNVSVF 112 (588)
T ss_dssp -----------------------------------------------TTSCSCCEEEEEECS-SSSCEEEEETTSCEEEE
T ss_pred -----------------------------------------------ecCCCCcEEEEEECC-CCCEEEEEeCCCcEEEE
Confidence 001234677888875 77888899999999999
Q ss_pred ECCCceeeeeeeCCcc-----ceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCce-------EEEee----ecccCcEE
Q 004214 268 DLSSMSCSYVLAGHSE-----IVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC-------CVGVG----TGHMGAVG 331 (768)
Q Consensus 268 d~~~~~~~~~~~~~~~-----~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-------~~~~~----~~~~~~v~ 331 (768)
|..+ +...+. |.. .+.+++ ++|+++. |++|+.||+|++||+.++. .+..+ .+|...|.
T Consensus 113 d~~~--~l~~l~-~~~~~~~~sv~sva--fSPDG~~-LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~ 186 (588)
T 2j04_A 113 KDNK--MLTNLD-SKGNLSSRTYHCFE--WNPIESS-IVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVT 186 (588)
T ss_dssp ETTE--EEEECC-CSSCSTTTCEEEEE--ECSSSSC-EEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEE
T ss_pred eCCc--eeeecc-CCCccccccEEEEE--EcCCCCE-EEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEE
Confidence 8544 555556 665 488887 7787776 9999999999999999875 35565 67888999
Q ss_pred EEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEe-eccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 004214 332 AVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVV-AAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLP 410 (768)
Q Consensus 332 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~ 410 (768)
+++|+|+| +++++.|++|++|++..... ......+ .+|...|.+++|+ |..+|+++ +++|++||+.
T Consensus 187 sVawSPdg---Laass~D~tVrlWd~~~~~~-------~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~ 253 (588)
T 2j04_A 187 HIVWYEDV---LVAALSNNSVFSMTVSASSH-------QPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLK 253 (588)
T ss_dssp EEEEETTE---EEEEETTCCEEEECCCSSSS-------CCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETT
T ss_pred EEEEcCCc---EEEEeCCCeEEEEECCCCcc-------ccceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECC
Confidence 99999996 78899999999999875421 0012233 3688899999999 68899887 6999999999
Q ss_pred CCceEEEEeccCCCeEEEEE--ccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcE
Q 004214 411 DLVSVVTFRGHKRGIWSVEF--SPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLV 488 (768)
Q Consensus 411 ~~~~~~~~~~~~~~v~~v~~--s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i 488 (768)
+++......+|...|..++| +|++..+++++.||+ ++|... .++|+|++..+++. |+++
T Consensus 254 ~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d----------------~~~~spd~~l~a~~--d~~v 314 (588)
T 2j04_A 254 NYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED----------------ELHVTADNIIAPYL--EKKF 314 (588)
T ss_dssp TTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS----------------SEEEECCCSSHHHH--HHHH
T ss_pred CCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec----------------cEEECCCceEEEEc--CCEE
Confidence 88775545489999999999 999999999999999 999986 16699999888775 8999
Q ss_pred EEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeC
Q 004214 489 KLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGS 526 (768)
Q Consensus 489 ~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~ 526 (768)
++|+...+. +..+.+ ...|.+++|||||+.+|+++.
T Consensus 315 ~lW~~~g~~-l~~~~~-~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 315 KKWSTIWNE-FNNYET-TLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp HHTTTTTTS-SSSSCC-EEEEEEEEECTTSSEEEEEEE
T ss_pred EEEECCCCc-eeeecc-ceEEEEEEECCCCCEEEEEEe
Confidence 999975544 445553 677999999999999998873
No 92
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=2.9e-34 Score=301.03 Aligned_cols=300 Identities=17% Similarity=0.240 Sum_probs=242.0
Q ss_pred EEEEECCCCEEEEEEEcCCCcEEEEEEeeC---CCccEEEEEeCCCcEEEEECCC-CeeE-EEecCccceeEEEEEcCCC
Q 004214 12 VLVWDVDGGFCTHYFKGHKGVVSSILFHPD---TDKSLLFSGSDDATVRVWDLLA-KKCV-ATLDKHFSRVTSMAITSDG 86 (768)
Q Consensus 12 i~vwd~~~~~~~~~l~gh~~~V~~l~~spd---~~~~~l~sg~~dg~I~iWd~~~-~~~~-~~l~~h~~~V~~l~fs~d~ 86 (768)
+..|+......+..+.+|.+.|++++|+|+ |++ |++|+.||.|+|||+.+ +..+ ..+.+|.+.|++++|+|++
T Consensus 21 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~--l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 98 (368)
T 3mmy_A 21 ATTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNF--LIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDG 98 (368)
T ss_dssp --CCSSCTTCCEECSSCCSSCEEEEEECCTTSSSEE--EEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTS
T ss_pred eccCCCCCcceeEeccCCCCceEEEEEcCCCCCceE--EEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCC
Confidence 344566677778889999999999999998 465 99999999999999987 5555 7888999999999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEE
Q 004214 87 STLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWN 166 (768)
Q Consensus 87 ~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd 166 (768)
++|++++.||.|++||+.+++...
T Consensus 99 ~~l~s~~~dg~v~iwd~~~~~~~~-------------------------------------------------------- 122 (368)
T 3mmy_A 99 SKVFTASCDKTAKMWDLSSNQAIQ-------------------------------------------------------- 122 (368)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEE--------------------------------------------------------
T ss_pred CEEEEEcCCCcEEEEEcCCCCcee--------------------------------------------------------
Confidence 999999999999999987653211
Q ss_pred cCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEE
Q 004214 167 ADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLK 246 (768)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 246 (768)
T Consensus 123 -------------------------------------------------------------------------------- 122 (368)
T 3mmy_A 123 -------------------------------------------------------------------------------- 122 (368)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecc
Q 004214 247 FLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGH 326 (768)
Q Consensus 247 ~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 326 (768)
+..|...|.++.++..+++. ++++++.||.|++||+.+++.+..+..+
T Consensus 123 -------------------------------~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 170 (368)
T 3mmy_A 123 -------------------------------IAQHDAPVKTIHWIKAPNYS-CVMTGSWDKTLKFWDTRSSNPMMVLQLP 170 (368)
T ss_dssp -------------------------------EEECSSCEEEEEEEECSSCE-EEEEEETTSEEEEECSSCSSCSEEEECS
T ss_pred -------------------------------eccccCceEEEEEEeCCCCC-EEEEccCCCcEEEEECCCCcEEEEEecC
Confidence 11244556666522244444 4899999999999999998888887766
Q ss_pred cCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCE----EEEEeCCC
Q 004214 327 MGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSL----VCTGSQDR 402 (768)
Q Consensus 327 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~----l~~~~~dg 402 (768)
. .+.++.+.++ .+++++.++.+.+|++.... .........+...+.++++.++... +++++.||
T Consensus 171 ~-~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg 238 (368)
T 3mmy_A 171 E-RCYCADVIYP---MAVVATAERGLIVYQLENQP--------SEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEG 238 (368)
T ss_dssp S-CEEEEEEETT---EEEEEEGGGCEEEEECSSSC--------EEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTS
T ss_pred C-CceEEEecCC---eeEEEeCCCcEEEEEecccc--------chhhhccccccCCCceEEEcccCCCCCCeEEEecCCC
Confidence 4 5667777654 68899999999999997532 1112222334456677777766554 99999999
Q ss_pred cEEEEeCCCC---ceEEEEeccCC------------CeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcE
Q 004214 403 TACVWRLPDL---VSVVTFRGHKR------------GIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSV 467 (768)
Q Consensus 403 ~i~i~d~~~~---~~~~~~~~~~~------------~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v 467 (768)
.|++|++... .....+.+|.. +|++++|+|++++|++++.||.|++||+.+++++..+.+|..+|
T Consensus 239 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v 318 (368)
T 3mmy_A 239 RVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPI 318 (368)
T ss_dssp EEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCE
T ss_pred cEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCc
Confidence 9999999887 66778888876 79999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCEEEEEeCCCcEEEEEC
Q 004214 468 LRASFLTRGAQIVSCGADGLVKLWTV 493 (768)
Q Consensus 468 ~~~~~s~~~~~l~s~~~dg~i~iwd~ 493 (768)
++++|+|+|++|++++.|+..+.|++
T Consensus 319 ~~~~~s~~g~~l~~~s~d~~~~~~~~ 344 (368)
T 3mmy_A 319 SACCFNHNGNIFAYASSYDWSKGHEF 344 (368)
T ss_dssp EEEEECTTSSCEEEEECCCSTTCGGG
T ss_pred eEEEECCCCCeEEEEecccccccccc
Confidence 99999999999999999886555543
No 93
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=5.6e-33 Score=284.94 Aligned_cols=282 Identities=21% Similarity=0.330 Sum_probs=229.8
Q ss_pred EEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEec--CccceeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeee
Q 004214 33 VSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLD--KHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKL 110 (768)
Q Consensus 33 V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~--~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~~~~~~~ 110 (768)
.++|+||+++ +||+| .|++|+|||+.+++++..+. +|...|++++|+|++++|++|+.||.|++||+++++++.
T Consensus 28 ~~~l~WS~~~---~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~ 103 (318)
T 4ggc_A 28 LNLVDWSSGN---VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 103 (318)
T ss_dssp CBCEEECTTS---EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred ceEEEECCCC---EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEE
Confidence 4789999874 37766 49999999999999887764 678889999999999999999999999999998765433
Q ss_pred eeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcc
Q 004214 111 TVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSK 190 (768)
Q Consensus 111 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 190 (768)
.+
T Consensus 104 ~~------------------------------------------------------------------------------ 105 (318)
T 4ggc_A 104 NM------------------------------------------------------------------------------ 105 (318)
T ss_dssp EE------------------------------------------------------------------------------
T ss_pred Ee------------------------------------------------------------------------------
Confidence 22
Q ss_pred cceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECC
Q 004214 191 RGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLS 270 (768)
Q Consensus 191 ~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~ 270 (768)
T Consensus 106 -------------------------------------------------------------------------------- 105 (318)
T 4ggc_A 106 -------------------------------------------------------------------------------- 105 (318)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCc-eEEEeeecccCcEEEEEEecCCCcEEEEEeCC
Q 004214 271 SMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR-CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSD 349 (768)
Q Consensus 271 ~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d 349 (768)
.+|...+.++. ..+. ++++|+.++.+++|+.... ..+..+.+|...+..+.+.+++. ++++++.|
T Consensus 106 --------~~h~~~~~~~~----~~~~-~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~d 171 (318)
T 4ggc_A 106 --------TSHSARVGSLS----WNSY-ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGR-HLASGGND 171 (318)
T ss_dssp --------ECCSSCEEEEE----EETT-EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS-EEEEEETT
T ss_pred --------cCccceEEEee----cCCC-EEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCC-EEEEEecC
Confidence 22333333332 2233 4888999999999988764 45667889999999999999976 89999999
Q ss_pred CeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEE---EEEeCCCcEEEEeCCCCceEEEEeccCCCeE
Q 004214 350 HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLV---CTGSQDRTACVWRLPDLVSVVTFRGHKRGIW 426 (768)
Q Consensus 350 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l---~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~ 426 (768)
|.|++||+..+.. ..........+...|.+++++|++..+ ++++.+++|++||........... +...+.
T Consensus 172 ~~i~iwd~~~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~ 244 (318)
T 4ggc_A 172 NLVNVWPSAPGEG------GWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVC 244 (318)
T ss_dssp SCEEEEESSCBTT------BSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEE
T ss_pred cceeEEECCCCcc------cccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-ceeeee
Confidence 9999999986532 122344456678899999999976533 456788999999998887766554 778899
Q ss_pred EEEEccCCCEEEEee--CCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCe
Q 004214 427 SVEFSPVDQVVITAS--GDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE 497 (768)
Q Consensus 427 ~v~~s~~~~~l~t~~--~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~ 497 (768)
.+.|+|++..+++++ .|+.|++||+.+++++.++.+|.+.|++++|+|+|++|++|+.||+|+|||+.+..
T Consensus 245 ~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 245 SILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp EEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred eeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 999999999887754 79999999999999999999999999999999999999999999999999997654
No 94
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=1.4e-33 Score=302.84 Aligned_cols=292 Identities=28% Similarity=0.460 Sum_probs=230.2
Q ss_pred EcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004214 27 KGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDY 106 (768)
Q Consensus 27 ~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~~~ 106 (768)
.+|...|+|++| +++. +++|+.||.|++||+.+++.+..+.+|.+.|.+++| ++++|++++.||.|++||+.++
T Consensus 130 ~~~~~~v~~~~~--d~~~--l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~ 203 (435)
T 1p22_A 130 SETSKGVYCLQY--DDQK--IVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTG 203 (435)
T ss_dssp CSSCCCEEEEEC--CSSE--EEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSC
T ss_pred cCCCCcEEEEEE--CCCE--EEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCC
Confidence 457778999887 5566 999999999999999999999999999999999998 7889999999999999998765
Q ss_pred eeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccc
Q 004214 107 SCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEM 186 (768)
Q Consensus 107 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~ 186 (768)
+++.
T Consensus 204 ~~~~---------------------------------------------------------------------------- 207 (435)
T 1p22_A 204 EMLN---------------------------------------------------------------------------- 207 (435)
T ss_dssp CEEE----------------------------------------------------------------------------
T ss_pred cEEE----------------------------------------------------------------------------
Confidence 4221
Q ss_pred cCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEE
Q 004214 187 DDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQV 266 (768)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i 266 (768)
T Consensus 208 -------------------------------------------------------------------------------- 207 (435)
T 1p22_A 208 -------------------------------------------------------------------------------- 207 (435)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEE---EeeecccCcEEEEEEecCCCcEE
Q 004214 267 YDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCV---GVGTGHMGAVGAVAFSKKLQNFL 343 (768)
Q Consensus 267 ~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~l 343 (768)
.+.+|...|.++. +. ++ ++++|+.||.|++||+.++... ..+.+|...|.++++.. .++
T Consensus 208 ----------~~~~h~~~v~~l~--~~--~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l 269 (435)
T 1p22_A 208 ----------TLIHHCEAVLHLR--FN--NG-MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD---KYI 269 (435)
T ss_dssp ----------EECCCCSCEEEEE--CC--TT-EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET---TEE
T ss_pred ----------EEcCCCCcEEEEE--Ec--CC-EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeCC---CEE
Confidence 2233555566664 22 23 4888888888888888776544 56778999999999943 389
Q ss_pred EEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCC
Q 004214 344 VSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKR 423 (768)
Q Consensus 344 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 423 (768)
++|+.||.|++||+... ........|...|.+++++ +.++++|+.||.|++||+.+++.+..+.+|..
T Consensus 270 ~s~~~dg~i~vwd~~~~----------~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~ 337 (435)
T 1p22_A 270 VSASGDRTIKVWNTSTC----------EFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEE 337 (435)
T ss_dssp EEEETTSEEEEEETTTC----------CEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSS
T ss_pred EEEeCCCeEEEEECCcC----------cEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcC
Confidence 99999999999999843 3556677899999999984 68999999999999999999999999999999
Q ss_pred CeEEEEEccCCCEEEEeeCCCcEEEEeCCCCc---------eeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECC
Q 004214 424 GIWSVEFSPVDQVVITASGDKTIKIWSISDGS---------CLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVR 494 (768)
Q Consensus 424 ~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~---------~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 494 (768)
.|.+++| ++.+|++|+.||.|++||+.++. ++..+.+|...|++++| ++++|++++.||.|++||+.
T Consensus 338 ~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~ 413 (435)
T 1p22_A 338 LVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFL 413 (435)
T ss_dssp CEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC--
T ss_pred cEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECC
Confidence 9999999 68999999999999999997766 88999999999999999 78899999999999999998
Q ss_pred CCeEEEEeccCCCcEEEEEEc
Q 004214 495 TGECIATYDKHEDKIWALAVG 515 (768)
Q Consensus 495 ~~~~~~~~~~~~~~v~~l~~s 515 (768)
++....... ...+..++.|.
T Consensus 414 ~~~~~~~~~-~~~~~~~~~~~ 433 (435)
T 1p22_A 414 NDPAAQAEP-PRSPSRTYTYI 433 (435)
T ss_dssp ---------------------
T ss_pred CCCCcccCC-CCCCccceeee
Confidence 876655443 33445555544
No 95
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1.3e-34 Score=295.93 Aligned_cols=249 Identities=24% Similarity=0.371 Sum_probs=207.7
Q ss_pred eeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCce--EEEeeecccCcEEEEEEecC-CCcEEEEEeCCCeEE
Q 004214 277 VLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC--CVGVGTGHMGAVGAVAFSKK-LQNFLVSGSSDHTIK 353 (768)
Q Consensus 277 ~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~-~~~~l~s~~~dg~i~ 353 (768)
.+.+|...|.+++ +.+++.. |++|+.|++|++||+.++. .+..+.+|.++|.+++|+|+ ...+|++++.|++|+
T Consensus 8 ~~~~H~~~V~~v~--~s~~g~~-lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~ 84 (316)
T 3bg1_A 8 VDTSHEDMIHDAQ--MDYYGTR-LATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVI 84 (316)
T ss_dssp ------CCEEEEE--ECGGGCE-EEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEE
T ss_pred ecccccCeEEEee--EcCCCCE-EEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEE
Confidence 4578999999998 7777765 9999999999999998764 46778899999999999763 234799999999999
Q ss_pred EEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccC--CCEEEEEeCCCcEEEEeCCCCce---EEEEeccCCCeEEE
Q 004214 354 VWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN--DSLVCTGSQDRTACVWRLPDLVS---VVTFRGHKRGIWSV 428 (768)
Q Consensus 354 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~v~~v 428 (768)
+||+..+ .......+.+|...|++++|+|+ +.+|++|+.|++|++||+.+... ...+.+|...|.++
T Consensus 85 iWd~~~~--------~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~ 156 (316)
T 3bg1_A 85 IWREENG--------TWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAV 156 (316)
T ss_dssp EECCSSS--------CCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCC
T ss_pred EEECCCC--------cceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceE
Confidence 9998743 12234456789999999999997 88999999999999999987632 34456799999999
Q ss_pred EEccC-----------------CCEEEEeeCCCcEEEEeCCCC---ceeEEeecCCCcEEEEEEEeCC----CEEEEEeC
Q 004214 429 EFSPV-----------------DQVVITASGDKTIKIWSISDG---SCLKTFEGHTSSVLRASFLTRG----AQIVSCGA 484 (768)
Q Consensus 429 ~~s~~-----------------~~~l~t~~~d~~i~iwd~~~~---~~~~~~~~~~~~v~~~~~s~~~----~~l~s~~~ 484 (768)
+|+|+ +++|++|+.|++|++||+..+ .++..+.+|...|.+++|+|++ ++|++++.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~ 236 (316)
T 3bg1_A 157 SWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQ 236 (316)
T ss_dssp EECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEET
T ss_pred EEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcC
Confidence 99997 478999999999999999755 4677889999999999999986 89999999
Q ss_pred CCcEEEEECCCC---e-EEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 004214 485 DGLVKLWTVRTG---E-CIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDS 536 (768)
Q Consensus 485 dg~i~iwd~~~~---~-~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~ 536 (768)
||+|++|++.+. + ....+..|...|++++|+|++++|++++.||.|++|+..
T Consensus 237 D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 237 DGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp TCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred CCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 999999998763 1 223445688999999999999999999999999999975
No 96
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=5.1e-33 Score=281.47 Aligned_cols=250 Identities=22% Similarity=0.318 Sum_probs=212.0
Q ss_pred eecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCC--ceeeeeeeCCccceEEEeeeeecC-CCEEEEEEeCCCeEE
Q 004214 234 RLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSS--MSCSYVLAGHSEIVLCLDTCALSS-GKILIVTGSKDNSVR 310 (768)
Q Consensus 234 ~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~--~~~~~~~~~~~~~v~~l~~~~~~~-~~~~l~~~~~dg~i~ 310 (768)
.+.+|...|.+++|++ ++++|++|+.|+.|++||+.. .+....+.+|..+|.+++ +.++ .+.+|++|+.||+|+
T Consensus 4 ~~~~h~~~V~~~~~s~-~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~--~s~~~~g~~l~s~s~D~~v~ 80 (297)
T 2pm7_B 4 IANAHNEMIHDAVMDY-YGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVD--WAHPKFGTILASCSYDGKVM 80 (297)
T ss_dssp ECCSCSSCEEEEEECT-TSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEE--ECCGGGCSEEEEEETTTEEE
T ss_pred eccCCcCceEEEEECC-CCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEE--ecCCCcCCEEEEEcCCCEEE
Confidence 3568899999999984 788999999999999999974 467788999999999997 5443 234599999999999
Q ss_pred EEeCCCce--EEEeeecccCcEEEEEEecCC-CcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEE
Q 004214 311 LWDSESRC--CVGVGTGHMGAVGAVAFSKKL-QNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLA 387 (768)
Q Consensus 311 iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 387 (768)
+||+.++. .+..+.+|...|.+++|+|+. ..+|++++.|+.|++||++.... ........|...|.+++
T Consensus 81 iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~--------~~~~~~~~h~~~v~~~~ 152 (297)
T 2pm7_B 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGT--------TSPIIIDAHAIGVNSAS 152 (297)
T ss_dssp EEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSC--------BCCEEEECCSSCEEEEE
T ss_pred EEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCc--------eeeeeeecccCccceEe
Confidence 99998774 556677899999999999972 34899999999999999975321 11345678999999999
Q ss_pred EccC-------------CCEEEEEeCCCcEEEEeCCCCc----eEEEEeccCCCeEEEEEccCC---CEEEEeeCCCcEE
Q 004214 388 VAPN-------------DSLVCTGSQDRTACVWRLPDLV----SVVTFRGHKRGIWSVEFSPVD---QVVITASGDKTIK 447 (768)
Q Consensus 388 ~s~~-------------~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~v~~v~~s~~~---~~l~t~~~d~~i~ 447 (768)
|+|+ +++|++|+.|++|++||++++. ....+.+|...|.+++|+|++ .+|++++.|++|+
T Consensus 153 ~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~ 232 (297)
T 2pm7_B 153 WAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCI 232 (297)
T ss_dssp ECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEE
T ss_pred ecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEE
Confidence 9997 5799999999999999998765 567788999999999999984 8999999999999
Q ss_pred EEeCCCCc---eeEEe--ecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECC
Q 004214 448 IWSISDGS---CLKTF--EGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVR 494 (768)
Q Consensus 448 iwd~~~~~---~~~~~--~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 494 (768)
|||+.++. ....+ .+|...|.+++|+|+|++|++++.||.|++|+..
T Consensus 233 iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 233 IWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp EEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred EEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 99997753 12233 4688899999999999999999999999999976
No 97
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=2.8e-33 Score=302.21 Aligned_cols=324 Identities=14% Similarity=0.219 Sum_probs=236.9
Q ss_pred CCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCe-----------eEEEecCcc------------ceeEEEEEcCC
Q 004214 29 HKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK-----------CVATLDKHF------------SRVTSMAITSD 85 (768)
Q Consensus 29 h~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~-----------~~~~l~~h~------------~~V~~l~fs~d 85 (768)
|.+.|++++|+|+|++ ||+|+.||.|+|||+.+++ .+..+.+|. +.|++++|+|+
T Consensus 27 ~~~~V~~v~~s~~g~~--la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~ 104 (447)
T 3dw8_B 27 EADIISTVEFNHSGEL--LATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQ 104 (447)
T ss_dssp GGGSEEEEEECSSSSE--EEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCC
T ss_pred ccCcEEEEEECCCCCE--EEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCC
Confidence 6889999999999987 9999999999999998877 588899998 88999999999
Q ss_pred C--CEEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEE
Q 004214 86 G--STLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVR 163 (768)
Q Consensus 86 ~--~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~ 163 (768)
+ .+|++++.|+.|++||+.++......... .+ .+|.+.
T Consensus 105 ~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~----------~~------------------------------~~g~~~ 144 (447)
T 3dw8_B 105 KNAAQFLLSTNDKTIKLWKISERDKRPEGYNL----------KE------------------------------EDGRYR 144 (447)
T ss_dssp CSSSEEEEEECSSCEEEEEEEEEEEEEECCSC----------C-------------------------------------
T ss_pred CCcceEEEeCCCCeEEEEecccccCCcceecc----------cC------------------------------cccccc
Confidence 8 89999999999999998765432111000 00 000000
Q ss_pred EEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCcee
Q 004214 164 MWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEIL 243 (768)
Q Consensus 164 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 243 (768)
.... . ..+ .. .
T Consensus 145 --~~~~------------------------------~-----------~~~-------------~~-------------~ 155 (447)
T 3dw8_B 145 --DPTT------------------------------V-----------TTL-------------RV-------------P 155 (447)
T ss_dssp ---CCC------------------------------C-----------CSC-------------CC-------------C
T ss_pred --Cccc------------------------------c-----------cce-------------Ee-------------c
Confidence 0000 0 000 00 0
Q ss_pred EEEEecCCCCEEEEEeCCCcEEEEECCCceeeee-eeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCC-ceEEE
Q 004214 244 DLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYV-LAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES-RCCVG 321 (768)
Q Consensus 244 ~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~-~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~ 321 (768)
.+ .+ .+ .. .. ...... ..+|...|.+++ +.+++.. |++| .||.|++||+.+ +..+.
T Consensus 156 ~~--~~-~~-~~-------------~~-~~~~~~~~~~h~~~v~~~~--~~~~~~~-l~s~-~d~~i~iwd~~~~~~~~~ 213 (447)
T 3dw8_B 156 VF--RP-MD-LM-------------VE-ASPRRIFANAHTYHINSIS--INSDYET-YLSA-DDLRINLWHLEITDRSFN 213 (447)
T ss_dssp EE--EE-EE-EE-------------EE-EEEEEEECSCCSSCCCEEE--ECTTSSE-EEEE-CSSEEEEEETTEEEEEEE
T ss_pred cc--cc-hh-ee-------------ee-ccceEEeccCCCcceEEEE--EcCCCCE-EEEe-CCCeEEEEECCCCCceee
Confidence 00 00 00 00 00 011122 367899999997 7777665 8888 799999999994 44444
Q ss_pred -------eeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccC------------CC
Q 004214 322 -------VGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHG------------KD 382 (768)
Q Consensus 322 -------~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~------------~~ 382 (768)
.+.+|...|.+++|+|++..++++|+.||.|++||++...... .....+..|. ..
T Consensus 214 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 287 (447)
T 3dw8_B 214 IVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCD------RHSKLFEEPEDPSNRSFFSEIISS 287 (447)
T ss_dssp EEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSC------TTCEEECCC-----CCHHHHHTTC
T ss_pred eeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcccc------ceeeEeccCCCccccccccccCce
Confidence 3568999999999999985699999999999999998653211 1123344444 38
Q ss_pred eEEEEEccCCCEEEEEeCCCcEEEEeCCC-CceEEEEeccCCC---------------eEEEEEccCCCEEEEeeCCCcE
Q 004214 383 INSLAVAPNDSLVCTGSQDRTACVWRLPD-LVSVVTFRGHKRG---------------IWSVEFSPVDQVVITASGDKTI 446 (768)
Q Consensus 383 i~~~~~s~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~---------------v~~v~~s~~~~~l~t~~~d~~i 446 (768)
|.+++|+|++++|++++. +.|++||+.+ ++++..+.+|... +..++|+|++++|++|+.||.|
T Consensus 288 v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v 366 (447)
T 3dw8_B 288 ISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFF 366 (447)
T ss_dssp EEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEE
T ss_pred EEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEE
Confidence 999999999999999999 9999999997 8888888888642 3349999999999999999999
Q ss_pred EEEeCCCCceeEEee---------------------------------cCCCcEEEEEEEeCCCEEEEEeCCCcEEEEEC
Q 004214 447 KIWSISDGSCLKTFE---------------------------------GHTSSVLRASFLTRGAQIVSCGADGLVKLWTV 493 (768)
Q Consensus 447 ~iwd~~~~~~~~~~~---------------------------------~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 493 (768)
++||+.+++.+. +. .+...|..++|+|++++|++++.++ +++|.-
T Consensus 367 ~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 367 RMFDRNTKRDIT-LEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp EEEETTTCCEEE-EECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEEC
T ss_pred EEEEcCCCccee-eeecccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce-eeeecc
Confidence 999999887653 22 2345788999999999999998876 778864
Q ss_pred C
Q 004214 494 R 494 (768)
Q Consensus 494 ~ 494 (768)
+
T Consensus 445 ~ 445 (447)
T 3dw8_B 445 K 445 (447)
T ss_dssp C
T ss_pred c
Confidence 3
No 98
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=1.1e-32 Score=285.92 Aligned_cols=283 Identities=18% Similarity=0.184 Sum_probs=240.1
Q ss_pred ecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCce---eeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEE
Q 004214 235 LVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMS---CSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRL 311 (768)
Q Consensus 235 ~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~---~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~i 311 (768)
..+|.+.|.+++|++ ++.++++++.++.|++|++.++. ....+.+|...|.+++ +.+++..++++|+.||.|++
T Consensus 7 ~~~h~~~v~~~~~s~-~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~l~~~~~dg~i~~ 83 (342)
T 1yfq_A 7 EQAPKDYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCN--FIDNTDLQIYVGTVQGEILK 83 (342)
T ss_dssp SSCCSSCEEEEEEEG-GGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEE--EEESSSEEEEEEETTSCEEE
T ss_pred ccCCCCcEEEEEEcC-CCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEE--ECCCCCcEEEEEcCCCeEEE
Confidence 347889999999996 67899999999999999998876 3455668999999998 77777614999999999999
Q ss_pred EeC-CCceEEEeeec--ccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEE
Q 004214 312 WDS-ESRCCVGVGTG--HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAV 388 (768)
Q Consensus 312 wd~-~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 388 (768)
||+ .++.. ..+.+ |...|.+++|+| +. ++++++.|+.|++||+........ ........... |...|.+++|
T Consensus 84 wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~-~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~-~~~~v~~~~~ 158 (342)
T 1yfq_A 84 VDLIGSPSF-QALTNNEANLGICRICKYG-DD-KLIAASWDGLIEVIDPRNYGDGVI-AVKNLNSNNTK-VKNKIFTMDT 158 (342)
T ss_dssp ECSSSSSSE-EECBSCCCCSCEEEEEEET-TT-EEEEEETTSEEEEECHHHHTTBCE-EEEESCSSSSS-SCCCEEEEEE
T ss_pred EEeccCCce-EeccccCCCCceEEEEeCC-CC-EEEEEcCCCeEEEEcccccccccc-cccCCeeeEEe-eCCceEEEEe
Confidence 999 87765 66778 999999999999 44 899999999999999874100000 00011122222 7789999999
Q ss_pred ccCCCEEEEEeCCCcEEEEeCCC-Cc--eEEEEeccCCCeEEEEEcc-CCCEEEEeeCCCcEEEEeCCCC------ceeE
Q 004214 389 APNDSLVCTGSQDRTACVWRLPD-LV--SVVTFRGHKRGIWSVEFSP-VDQVVITASGDKTIKIWSISDG------SCLK 458 (768)
Q Consensus 389 s~~~~~l~~~~~dg~i~i~d~~~-~~--~~~~~~~~~~~v~~v~~s~-~~~~l~t~~~d~~i~iwd~~~~------~~~~ 458 (768)
+|++ +++++.|+.|++||+++ +. .......|...|.+++|+| +++++++++.||.|++|++... +...
T Consensus 159 ~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~ 236 (342)
T 1yfq_A 159 NSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRF 236 (342)
T ss_dssp CSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCE
T ss_pred cCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccce
Confidence 9987 99999999999999988 54 3345556888999999999 9999999999999999999887 8888
Q ss_pred EeecCCC---------cEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccC-CCcEEEEEEcCCCCEEEEEeCCC
Q 004214 459 TFEGHTS---------SVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKH-EDKIWALAVGKKTEMFATGGSDA 528 (768)
Q Consensus 459 ~~~~~~~---------~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~l~~s~~~~~l~s~~~dg 528 (768)
.+.+|.. .|++++|+|++++|++++.||.|++||+.+++++..+.+| ..+|++++ |++++|++++.||
T Consensus 237 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg 314 (342)
T 1yfq_A 237 AFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDD 314 (342)
T ss_dssp EEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECT
T ss_pred eeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCC
Confidence 9988866 9999999999999999999999999999999999999998 99999999 9999999999999
Q ss_pred c
Q 004214 529 L 529 (768)
Q Consensus 529 ~ 529 (768)
.
T Consensus 315 ~ 315 (342)
T 1yfq_A 315 T 315 (342)
T ss_dssp H
T ss_pred c
Confidence 8
No 99
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=3.4e-33 Score=301.48 Aligned_cols=284 Identities=14% Similarity=0.235 Sum_probs=234.8
Q ss_pred ccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCce-----------eeeeeeCCc------------cceEEEeeeee
Q 004214 237 GYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMS-----------CSYVLAGHS------------EIVLCLDTCAL 293 (768)
Q Consensus 237 ~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~-----------~~~~~~~~~------------~~v~~l~~~~~ 293 (768)
.+.+.|.+++|++ ++.+|++|+.||.|++|++.++. ....+.+|. ..|.++. +.
T Consensus 26 ~~~~~V~~v~~s~-~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~--~~ 102 (447)
T 3dw8_B 26 AEADIISTVEFNH-SGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIR--WL 102 (447)
T ss_dssp CGGGSEEEEEECS-SSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEE--EC
T ss_pred cccCcEEEEEECC-CCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEE--Ec
Confidence 3567899999986 78999999999999999999877 477888998 8899998 66
Q ss_pred cCCC-EEEEEEeCCCeEEEEeCCCceEE---------------------------------------Ee-eecccCcEEE
Q 004214 294 SSGK-ILIVTGSKDNSVRLWDSESRCCV---------------------------------------GV-GTGHMGAVGA 332 (768)
Q Consensus 294 ~~~~-~~l~~~~~dg~i~iwd~~~~~~~---------------------------------------~~-~~~~~~~v~~ 332 (768)
+++. .++++++.||.|++||+.++... .. ..+|...|.+
T Consensus 103 ~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 182 (447)
T 3dw8_B 103 PQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINS 182 (447)
T ss_dssp CCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCE
T ss_pred CCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEE
Confidence 6652 34999999999999998765432 12 3679999999
Q ss_pred EEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceee-------EeeccCCCeEEEEEccCC-CEEEEEeCCCcE
Q 004214 333 VAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKA-------VVAAHGKDINSLAVAPND-SLVCTGSQDRTA 404 (768)
Q Consensus 333 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-------~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i 404 (768)
++|+|++. +|++| .|+.|++||+.... .... ....|...|++++|+|++ .+|++|+.||.|
T Consensus 183 ~~~~~~~~-~l~s~-~d~~i~iwd~~~~~---------~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i 251 (447)
T 3dw8_B 183 ISINSDYE-TYLSA-DDLRINLWHLEITD---------RSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTI 251 (447)
T ss_dssp EEECTTSS-EEEEE-CSSEEEEEETTEEE---------EEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCE
T ss_pred EEEcCCCC-EEEEe-CCCeEEEEECCCCC---------ceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeE
Confidence 99999966 78888 89999999997321 1111 245789999999999998 999999999999
Q ss_pred EEEeCCCCce----EEEEeccCC------------CeEEEEEccCCCEEEEeeCCCcEEEEeCCC-CceeEEeecCCCc-
Q 004214 405 CVWRLPDLVS----VVTFRGHKR------------GIWSVEFSPVDQVVITASGDKTIKIWSISD-GSCLKTFEGHTSS- 466 (768)
Q Consensus 405 ~i~d~~~~~~----~~~~~~~~~------------~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~-~~~~~~~~~~~~~- 466 (768)
++||+++++. ...+.+|.. .|.+++|+|++++|++++. +.|++||+++ ++++..+.+|...
T Consensus 252 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~ 330 (447)
T 3dw8_B 252 RLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLR 330 (447)
T ss_dssp EEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGT
T ss_pred EEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccc
Confidence 9999999886 788888876 8999999999999999999 9999999997 8999999988642
Q ss_pred --------------EEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEec-----------------------------
Q 004214 467 --------------VLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD----------------------------- 503 (768)
Q Consensus 467 --------------v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----------------------------- 503 (768)
+..++|+|++++|++|+.||.|++||+.+++.+....
T Consensus 331 ~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (447)
T 3dw8_B 331 SKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISV 410 (447)
T ss_dssp TTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEG
T ss_pred ccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccc
Confidence 3349999999999999999999999999988764110
Q ss_pred ---cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 004214 504 ---KHEDKIWALAVGKKTEMFATGGSDALVNLWHDS 536 (768)
Q Consensus 504 ---~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~ 536 (768)
.+...|.+++|+|++++||+++.++ +++|...
T Consensus 411 ~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 411 DSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp GGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEECC
T ss_pred cccccCCceeEEEECCCCCEEEEEecce-eeeeccc
Confidence 2345788999999999999998886 7777643
No 100
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-33 Score=302.23 Aligned_cols=330 Identities=14% Similarity=0.206 Sum_probs=250.0
Q ss_pred EEEeecCCCcEEEEECCC---CE---EEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECC---CCeeEEEecC
Q 004214 2 FALLEGADRKVLVWDVDG---GF---CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLL---AKKCVATLDK 72 (768)
Q Consensus 2 ~latg~~dg~i~vwd~~~---~~---~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~---~~~~~~~l~~ 72 (768)
+||+|+.||.|+|||+.+ +. ....+ +|.+.|++++|+|+++. |++|+.||+|++||+. +++.+..+.+
T Consensus 78 ~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~--l~s~s~dg~i~vwd~~~~~~~~~~~~~~~ 154 (437)
T 3gre_A 78 YLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDA--FAVSSKDGQIIVLKVNHYQQESEVKFLNC 154 (437)
T ss_dssp EEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSE--EEEEETTSEEEEEEEEEEEETTEEEEEEE
T ss_pred EEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCE--EEEEeCCCEEEEEEeccccCCceeecccc
Confidence 789999999999999976 43 22333 59999999999998887 9999999999999994 5555544433
Q ss_pred ------------ccceeEEEE--EcCCCCEEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccc
Q 004214 73 ------------HFSRVTSMA--ITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYN 138 (768)
Q Consensus 73 ------------h~~~V~~l~--fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 138 (768)
+...+.++. +++++.+|++++.|+.|++||+.+++++..+..
T Consensus 155 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~------------------------ 210 (437)
T 3gre_A 155 ECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIEN------------------------ 210 (437)
T ss_dssp EEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEEC------------------------
T ss_pred ceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEcc------------------------
Confidence 344566666 567899999999999999999988765443321
Q ss_pred hhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEe
Q 004214 139 QQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYT 218 (768)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~ 218 (768)
T Consensus 211 -------------------------------------------------------------------------------- 210 (437)
T 3gre_A 211 -------------------------------------------------------------------------------- 210 (437)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeee-CCccceEEEeee-eecCC
Q 004214 219 TVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLA-GHSEIVLCLDTC-ALSSG 296 (768)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~-~~~~~v~~l~~~-~~~~~ 296 (768)
..|...|.+++|++ ++.++++++.+|.|++||+.++..+..+. .|...|.++.++ .+.++
T Consensus 211 -----------------~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~ 272 (437)
T 3gre_A 211 -----------------SPRHGAVSSICIDE-ECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKN 272 (437)
T ss_dssp -----------------CGGGCCEEEEEECT-TSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTT
T ss_pred -----------------CCCCCceEEEEECC-CCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCC
Confidence 01345677788764 57899999999999999999999888876 788899999643 12234
Q ss_pred CEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEe
Q 004214 297 KILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVV 376 (768)
Q Consensus 297 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 376 (768)
+.++++|+.||.|++||+.+++++..+.+|...+..+.|+|++.. + .+.. + .-
T Consensus 273 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l----~~~~-----~-----------------~~ 325 (437)
T 3gre_A 273 SVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKG-L----EELN-----F-----------------CG 325 (437)
T ss_dssp EEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSS-G----GGCC-----C-----------------CC
T ss_pred ccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccc-c----ccce-----e-----------------cc
Confidence 556999999999999999999999999999999988889888653 2 1110 0 00
Q ss_pred eccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCC---CeEEEEEccCCCEEEEeeCCCcEEEEeCCC
Q 004214 377 AAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKR---GIWSVEFSPVDQVVITASGDKTIKIWSISD 453 (768)
Q Consensus 377 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~ 453 (768)
..|...|++++|+ ++++|++|+.||.|++||+.+++....+.+|.. .+....++++..+++.. |+...
T Consensus 326 ~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~ 396 (437)
T 3gre_A 326 IRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRK--------MKRTS 396 (437)
T ss_dssp CCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEE--------CC---
T ss_pred cccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEe--------ccccc
Confidence 2377889999999 789999999999999999999999999988643 45566666666555544 34444
Q ss_pred CceeEEeecCCCcEEEEEEEeC--CCEEEEEeCCCcEEEEE
Q 004214 454 GSCLKTFEGHTSSVLRASFLTR--GAQIVSCGADGLVKLWT 492 (768)
Q Consensus 454 ~~~~~~~~~~~~~v~~~~~s~~--~~~l~s~~~dg~i~iwd 492 (768)
+.....+..|...|++++|+++ +.+|++|+.||.|+||+
T Consensus 397 ~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 397 THSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp ----------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred ccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 5555666779999999999998 77999999999999995
No 101
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=1.2e-32 Score=286.36 Aligned_cols=309 Identities=15% Similarity=0.228 Sum_probs=227.4
Q ss_pred EEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCC----eeEEEecCccceeEEEEEcC--CCCEEEEEeCCCe
Q 004214 24 HYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK----KCVATLDKHFSRVTSMAITS--DGSTLISAGRDKV 97 (768)
Q Consensus 24 ~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~----~~~~~l~~h~~~V~~l~fs~--d~~~L~s~~~dg~ 97 (768)
..+.||.+.|++++|+|++++ |++|+.||.|++||+.++ +.+..+.+|...|++++|+| ++++|++++.||.
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~--l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~ 82 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRH--VATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKT 82 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSE--EEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred ccCcccccceeEEEEcCCCCE--EEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCe
Confidence 467899999999999999887 999999999999999876 57788899999999999999 6999999999999
Q ss_pred EEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecC
Q 004214 98 VNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKS 177 (768)
Q Consensus 98 i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~ 177 (768)
|++||+.++.......
T Consensus 83 v~vwd~~~~~~~~~~~---------------------------------------------------------------- 98 (351)
T 3f3f_A 83 VKLWEEDPDQEECSGR---------------------------------------------------------------- 98 (351)
T ss_dssp EEEEEECTTSCTTSSC----------------------------------------------------------------
T ss_pred EEEEecCCCccccccc----------------------------------------------------------------
Confidence 9999987653210000
Q ss_pred CceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCC-CCEEE
Q 004214 178 SDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEE-EQYLA 256 (768)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~ 256 (768)
.......+.+|...|.+++|++.. +.+++
T Consensus 99 --------------------------------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 128 (351)
T 3f3f_A 99 --------------------------------------------------RWNKLCTLNDSKGSLYSVKFAPAHLGLKLA 128 (351)
T ss_dssp --------------------------------------------------SEEEEEEECCCSSCEEEEEECCGGGCSEEE
T ss_pred --------------------------------------------------CcceeeeecccCCceeEEEEcCCCCCcEEE
Confidence 111223344677789999998643 78999
Q ss_pred EEeCCCcEEEEECCCceeeeeee-------------CCccceEEEeeeeecC--CCEEEEEEeCCCeEEEEeCCCceE--
Q 004214 257 VATNIEQVQVYDLSSMSCSYVLA-------------GHSEIVLCLDTCALSS--GKILIVTGSKDNSVRLWDSESRCC-- 319 (768)
Q Consensus 257 ~~~~~~~i~i~d~~~~~~~~~~~-------------~~~~~v~~l~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~-- 319 (768)
+++.++.|++||+.+++....+. .|...+.++. +.+. +..++++++.++.+.+|+...+..
T Consensus 129 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 206 (351)
T 3f3f_A 129 CLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLS--WCPSRFSPEKLAVSALEQAIIYQRGKDGKLHV 206 (351)
T ss_dssp EEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEE--ECCCSSSCCEEEEEETTEEEEEEECTTSCEEE
T ss_pred EecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEE--eccCCCCCcEEEEecCCCcEEEEccCCCceee
Confidence 99999999999998877554433 6888899998 5554 344599999999999998887765
Q ss_pred EEeeecccCcEEEEEEecCCC---cEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEE
Q 004214 320 VGVGTGHMGAVGAVAFSKKLQ---NFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVC 396 (768)
Q Consensus 320 ~~~~~~~~~~v~~~~~~~~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 396 (768)
+..+.+|...|.+++|+|++. .+|++++.||.|++||+....... ....+...+.....++....++
T Consensus 207 ~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~ 276 (351)
T 3f3f_A 207 AAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPL----------ASEESLTNSNMFDNSADVDMDA 276 (351)
T ss_dssp EEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-----------------------------------
T ss_pred eeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCcc----------ccCCcccceeccCCCccccccc
Confidence 677788999999999999973 589999999999999997542111 1111222233333333333333
Q ss_pred EE----eCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEe
Q 004214 397 TG----SQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTF 460 (768)
Q Consensus 397 ~~----~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~ 460 (768)
.+ .....+.+|+..+.+.+..+.+|...|++++|+|++++|++++.||.|++||+.+++.+..+
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 277 QGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCM 344 (351)
T ss_dssp --------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred ccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhe
Confidence 33 33445667777777888899999999999999999999999999999999999987655443
No 102
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-32 Score=288.24 Aligned_cols=262 Identities=19% Similarity=0.305 Sum_probs=209.2
Q ss_pred CEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECC--CCeeEEEecCccceeEEEEEcCC--CCEEEEEeCC
Q 004214 20 GFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLL--AKKCVATLDKHFSRVTSMAITSD--GSTLISAGRD 95 (768)
Q Consensus 20 ~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~--~~~~~~~l~~h~~~V~~l~fs~d--~~~L~s~~~d 95 (768)
|+++..+.+|.+.|++++|+|++++ ||+|+.||.|+|||+. +++.+..+.+|.+.|++++|+|+ +++|++++.|
T Consensus 1 G~~~~~~~~h~~~v~~~~~s~~~~~--l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d 78 (379)
T 3jrp_A 1 GSMVVIANAHNELIHDAVLDYYGKR--LATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD 78 (379)
T ss_dssp ----CCEEECCCCEEEEEECSSSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred CCccEEecCCcccEEEEEEcCCCCE--EEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccC
Confidence 4567789999999999999999887 9999999999999998 66788899999999999999987 9999999999
Q ss_pred CeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeee
Q 004214 96 KVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQ 175 (768)
Q Consensus 96 g~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~ 175 (768)
|.|++||+.+++..
T Consensus 79 g~v~iwd~~~~~~~------------------------------------------------------------------ 92 (379)
T 3jrp_A 79 GKVLIWKEENGRWS------------------------------------------------------------------ 92 (379)
T ss_dssp SCEEEEEEETTEEE------------------------------------------------------------------
T ss_pred CEEEEEEcCCCcee------------------------------------------------------------------
Confidence 99999997654210
Q ss_pred cCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEE
Q 004214 176 KSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYL 255 (768)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 255 (768)
T Consensus 93 -------------------------------------------------------------------------------- 92 (379)
T 3jrp_A 93 -------------------------------------------------------------------------------- 92 (379)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecC--CCEEEEEEeCCCeEEEEeCCCc--eEEEeeecccCcEE
Q 004214 256 AVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSS--GKILIVTGSKDNSVRLWDSESR--CCVGVGTGHMGAVG 331 (768)
Q Consensus 256 ~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~ 331 (768)
....+..|...|.++. +.++ +. ++++++.||.|++||+.++ .....+..|...|.
T Consensus 93 ------------------~~~~~~~~~~~v~~~~--~~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~ 151 (379)
T 3jrp_A 93 ------------------QIAVHAVHSASVNSVQ--WAPHEYGP-LLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVN 151 (379)
T ss_dssp ------------------EEEEECCCSSCEEEEE--ECCGGGCS-EEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEE
T ss_pred ------------------EeeeecCCCcceEEEE--eCCCCCCC-EEEEecCCCcEEEEecCCCCceeeEEecCCCCceE
Confidence 0012233455566665 4444 44 4888888899999988776 33445678999999
Q ss_pred EEEEecC------------CCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccC---CCEEE
Q 004214 332 AVAFSKK------------LQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN---DSLVC 396 (768)
Q Consensus 332 ~~~~~~~------------~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~---~~~l~ 396 (768)
+++|+|. ...++++++.||.|++||++.... ..........|...|.+++|+|+ +++|+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~------~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~ 225 (379)
T 3jrp_A 152 SASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ------TYVLESTLEGHSDWVRDVAWSPTVLLRSYLA 225 (379)
T ss_dssp EEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTT------EEEEEEEECCCSSCEEEEEECCCCSSSEEEE
T ss_pred EEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCc------ceeeEEEEecccCcEeEEEECCCCCCCCeEE
Confidence 9999994 244899999999999999975421 22344566789999999999999 89999
Q ss_pred EEeCCCcEEEEeCCCCc---eEEEE--eccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCce
Q 004214 397 TGSQDRTACVWRLPDLV---SVVTF--RGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSC 456 (768)
Q Consensus 397 ~~~~dg~i~i~d~~~~~---~~~~~--~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~ 456 (768)
+++.||.|++||+.++. ....+ ..|...|++++|+|++++|++++.||.|++|++..+..
T Consensus 226 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~ 290 (379)
T 3jrp_A 226 SVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGK 290 (379)
T ss_dssp EEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETTE
T ss_pred EEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCCc
Confidence 99999999999998864 22222 33888999999999999999999999999999975543
No 103
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=1.2e-30 Score=276.17 Aligned_cols=336 Identities=14% Similarity=0.125 Sum_probs=260.7
Q ss_pred EEEeecCCCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEE
Q 004214 2 FALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMA 81 (768)
Q Consensus 2 ~latg~~dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~ 81 (768)
++++++.|+.|++||+.+++++..+.+|.. +.+++|+|+++. ++++++.|+.|++||+.+++.+..+..|. .+.+++
T Consensus 4 l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~-l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~ 80 (391)
T 1l0q_A 4 AYIANSESDNISVIDVTSNKVTATIPVGSN-PMGAVISPDGTK-VYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVA 80 (391)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECSSS-EEEEEECTTSSE-EEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEE
T ss_pred EEEEcCCCCEEEEEECCCCeEEEEeecCCC-cceEEECCCCCE-EEEECCCCCeEEEEECCCCeEEEEEECCC-CccceE
Confidence 688999999999999999999999987765 899999999885 34778899999999999999999988666 899999
Q ss_pred EcCCCCEEEEEe-CCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCc
Q 004214 82 ITSDGSTLISAG-RDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERG 160 (768)
Q Consensus 82 fs~d~~~L~s~~-~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 160 (768)
|+|++++|+.++ .++.|++||+.+++.+..+..
T Consensus 81 ~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~---------------------------------------------- 114 (391)
T 1l0q_A 81 VSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT---------------------------------------------- 114 (391)
T ss_dssp ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC----------------------------------------------
T ss_pred ECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeC----------------------------------------------
Confidence 999999886555 569999999877653322110
Q ss_pred EEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCC
Q 004214 161 IVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNE 240 (768)
Q Consensus 161 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (768)
T Consensus 115 -------------------------------------------------------------------------------- 114 (391)
T 1l0q_A 115 -------------------------------------------------------------------------------- 114 (391)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEE
Q 004214 241 EILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCV 320 (768)
Q Consensus 241 ~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 320 (768)
...+.++. +.++++.++++++.++.|++||+.+++.+
T Consensus 115 -----------------------------------------~~~~~~~~--~s~dg~~l~~~~~~~~~v~~~d~~~~~~~ 151 (391)
T 1l0q_A 115 -----------------------------------------GKSPLGLA--LSPDGKKLYVTNNGDKTVSVINTVTKAVI 151 (391)
T ss_dssp -----------------------------------------SSSEEEEE--ECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred -----------------------------------------CCCcceEE--ECCCCCEEEEEeCCCCEEEEEECCCCcEE
Confidence 01223343 55666665578888999999999998888
Q ss_pred EeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEe-
Q 004214 321 GVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGS- 399 (768)
Q Consensus 321 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~- 399 (768)
..+..+. .+.+++|+|+++.++++++.++.|++||+... .... ...+...+.+++|+|+++++++++
T Consensus 152 ~~~~~~~-~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~----------~~~~-~~~~~~~~~~~~~~~~g~~l~~~~~ 219 (391)
T 1l0q_A 152 NTVSVGR-SPKGIAVTPDGTKVYVANFDSMSISVIDTVTN----------SVID-TVKVEAAPSGIAVNPEGTKAYVTNV 219 (391)
T ss_dssp EEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTT----------EEEE-EEECSSEEEEEEECTTSSEEEEEEE
T ss_pred EEEecCC-CcceEEECCCCCEEEEEeCCCCEEEEEECCCC----------eEEE-EEecCCCccceEECCCCCEEEEEec
Confidence 8877654 56899999998866678889999999999743 1222 233566789999999999999888
Q ss_pred --CCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEE-EEeeCCCcEEEEeCCCCceeEEeecCCCcEE--------
Q 004214 400 --QDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVV-ITASGDKTIKIWSISDGSCLKTFEGHTSSVL-------- 468 (768)
Q Consensus 400 --~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l-~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~-------- 468 (768)
.++.|++||+.+++.+..+..|. .+.+++|+|+++++ ++++.|+.|++||+.+++++..+..|..+..
T Consensus 220 ~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (391)
T 1l0q_A 220 DKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSI 298 (391)
T ss_dssp CSSCCEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEEC
T ss_pred CcCCCcEEEEECCCCeEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeecc
Confidence 68999999999999988888765 57899999999877 6678899999999999999998887655431
Q ss_pred -------EEEEEeCC----------CEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEe---CCC
Q 004214 469 -------RASFLTRG----------AQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGG---SDA 528 (768)
Q Consensus 469 -------~~~~s~~~----------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~---~dg 528 (768)
...|+.+. ..+...+.|..+++|++.+|... .+..+ ...|+++|.|.++.. .+|
T Consensus 299 ~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~~----~~~~~--~~~~~~~g~y~~~~~~~~~~g 372 (391)
T 1l0q_A 299 PVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSSS----KKQNP--THTYSETGIYTVRLTVSNSNG 372 (391)
T ss_dssp SSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCEE----CSSSC--EECCSSCEEEEEEEEEEETTE
T ss_pred cccccccccccccccccccccccceEEEEeCCCCceEEEEECCCCccc----CcCCC--eEEeCCCceEEEEEEEECCCC
Confidence 11233322 34566667889999999888742 23333 357899998877543 555
No 104
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=3.8e-33 Score=285.08 Aligned_cols=252 Identities=21% Similarity=0.272 Sum_probs=207.4
Q ss_pred eeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCce--eeeeeeCCccceEEEeeeeecC-CCEEEEEEeCCCeE
Q 004214 233 KRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMS--CSYVLAGHSEIVLCLDTCALSS-GKILIVTGSKDNSV 309 (768)
Q Consensus 233 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~--~~~~~~~~~~~v~~l~~~~~~~-~~~~l~~~~~dg~i 309 (768)
..+.+|.+.|.+++|++ ++++|++|+.|+.|++||+.++. ....+.+|...|.+++ +.++ ++.+|++|+.|++|
T Consensus 7 ~~~~~H~~~V~~v~~s~-~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~--~~~~~~~~~l~s~s~D~~v 83 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDY-YGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVA--WAHPMYGNILASCSYDRKV 83 (316)
T ss_dssp -------CCEEEEEECG-GGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEE--ECCGGGSSCEEEEETTSCE
T ss_pred eecccccCeEEEeeEcC-CCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEE--eCCCCCCCEEEEEECCCEE
Confidence 34568999999999985 77899999999999999998764 4667899999999997 5443 23349999999999
Q ss_pred EEEeCCCc--eEEEeeecccCcEEEEEEecCC-CcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEE
Q 004214 310 RLWDSESR--CCVGVGTGHMGAVGAVAFSKKL-QNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSL 386 (768)
Q Consensus 310 ~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 386 (768)
++||+.++ .....+.+|...|.+++|+|+. ..+|++|+.|++|++||+.... ..........|...|.++
T Consensus 84 ~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~-------~~~~~~~~~~h~~~v~~~ 156 (316)
T 3bg1_A 84 IIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEG-------QWEVKKINNAHTIGCNAV 156 (316)
T ss_dssp EEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSS-------CEEECCBTTSSSSCBCCC
T ss_pred EEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCC-------CcceeeeeccccCCcceE
Confidence 99999887 4566778999999999999973 3479999999999999987431 111223445788899999
Q ss_pred EEccC-----------------CCEEEEEeCCCcEEEEeCCCC---ceEEEEeccCCCeEEEEEccCC----CEEEEeeC
Q 004214 387 AVAPN-----------------DSLVCTGSQDRTACVWRLPDL---VSVVTFRGHKRGIWSVEFSPVD----QVVITASG 442 (768)
Q Consensus 387 ~~s~~-----------------~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~v~~v~~s~~~----~~l~t~~~ 442 (768)
+|+|+ +++|++|+.|++|++||+... +....+.+|...|.+++|+|++ ++|++++.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~ 236 (316)
T 3bg1_A 157 SWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQ 236 (316)
T ss_dssp EECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEET
T ss_pred EEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcC
Confidence 99997 478999999999999999755 4667788999999999999986 89999999
Q ss_pred CCcEEEEeCCCCc----eeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECC
Q 004214 443 DKTIKIWSISDGS----CLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVR 494 (768)
Q Consensus 443 d~~i~iwd~~~~~----~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 494 (768)
|++|++||+.+.. ....+.+|...|.+++|+|+|++|++++.||.|++|+..
T Consensus 237 D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 237 DGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp TCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred CCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 9999999987631 234566789999999999999999999999999999975
No 105
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=2.7e-32 Score=291.86 Aligned_cols=260 Identities=19% Similarity=0.337 Sum_probs=226.9
Q ss_pred eeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCC----------ceEEEeeecccCcEEEEEEecCCCcEEEE
Q 004214 276 YVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES----------RCCVGVGTGHMGAVGAVAFSKKLQNFLVS 345 (768)
Q Consensus 276 ~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~----------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s 345 (768)
.....|...|.+++ +.+.++.++++++.+|.|++|++.+ ...+..+.+|...|.+++|+|++..+|++
T Consensus 122 ~~~~~h~~~v~~l~--~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s 199 (430)
T 2xyi_A 122 EIKINHEGEVNRAR--YMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLS 199 (430)
T ss_dssp EEEEEESSCCSEEE--EETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEE
T ss_pred EEEEcCCCcEEEEE--ECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEE
Confidence 34567999999998 7776666799999999999999976 56777888999999999999998778999
Q ss_pred EeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCC---ceEEEEecc
Q 004214 346 GSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQDRTACVWRLPDL---VSVVTFRGH 421 (768)
Q Consensus 346 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~ 421 (768)
|+.||.|++|++....... ...........|...|.+++|+| ++.+|++++.||.|++||++++ +.+..+..|
T Consensus 200 ~~~dg~i~vwd~~~~~~~~---~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~ 276 (430)
T 2xyi_A 200 ASDDHTICLWDINATPKEH---RVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAH 276 (430)
T ss_dssp ECTTSCEEEEETTSCCBGG---GEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECC
T ss_pred EeCCCeEEEEeCCCCCCCC---ceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecC
Confidence 9999999999998632111 11122445568999999999999 7889999999999999999987 577888899
Q ss_pred CCCeEEEEEccCCC-EEEEeeCCCcEEEEeCCC-CceeEEeecCCCcEEEEEEEeCCC-EEEEEeCCCcEEEEECCC---
Q 004214 422 KRGIWSVEFSPVDQ-VVITASGDKTIKIWSISD-GSCLKTFEGHTSSVLRASFLTRGA-QIVSCGADGLVKLWTVRT--- 495 (768)
Q Consensus 422 ~~~v~~v~~s~~~~-~l~t~~~d~~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~--- 495 (768)
...|++++|+|++. ++++|+.||.|++||+++ +.++..+.+|...|++++|+|+++ +|++++.||.|++||+..
T Consensus 277 ~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~ 356 (430)
T 2xyi_A 277 TAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGE 356 (430)
T ss_dssp SSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTC
T ss_pred CCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCcc
Confidence 99999999999987 799999999999999998 578899999999999999999985 699999999999999987
Q ss_pred -----------CeEEEEeccCCCcEEEEEEcCCCC-EEEEEeCCCcEEEEEcCCHHH
Q 004214 496 -----------GECIATYDKHEDKIWALAVGKKTE-MFATGGSDALVNLWHDSTAAE 540 (768)
Q Consensus 496 -----------~~~~~~~~~~~~~v~~l~~s~~~~-~l~s~~~dg~v~vw~~~~~~~ 540 (768)
.+++..+.+|...|.+++|+|+++ +|++++.||.|++|++.+...
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~~~ 413 (430)
T 2xyi_A 357 EQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENVY 413 (430)
T ss_dssp CCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHHHH
T ss_pred ccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccccc
Confidence 477888889999999999999999 899999999999999986544
No 106
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=4.5e-32 Score=282.02 Aligned_cols=260 Identities=16% Similarity=0.277 Sum_probs=223.8
Q ss_pred eeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCc----eEEEeeecccCcEEEEEEecC-CCcEEEEEeCCC
Q 004214 276 YVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR----CCVGVGTGHMGAVGAVAFSKK-LQNFLVSGSSDH 350 (768)
Q Consensus 276 ~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~~~dg 350 (768)
..+.+|...|.+++ +.+++.. |++|+.||.|++||+.++ +....+.+|...|.+++|+|. ...+|++++.||
T Consensus 5 ~~~~gH~~~v~~~~--~~~~~~~-l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg 81 (351)
T 3f3f_A 5 PFDSGHDDLVHDVV--YDFYGRH-VATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDK 81 (351)
T ss_dssp CEECCCSSCEEEEE--ECSSSSE-EEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred ccCcccccceeEEE--EcCCCCE-EEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCC
Confidence 35689999999998 7777665 999999999999999876 567778899999999999994 244899999999
Q ss_pred eEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccC--CCEEEEEeCCCcEEEEeCCCCceEEEEe---------
Q 004214 351 TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN--DSLVCTGSQDRTACVWRLPDLVSVVTFR--------- 419 (768)
Q Consensus 351 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~--------- 419 (768)
.|++||+........ ............|...|.+++|+|+ +.++++++.||.|++||+.+++.+..+.
T Consensus 82 ~v~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 160 (351)
T 3f3f_A 82 TVKLWEEDPDQEECS-GRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLS 160 (351)
T ss_dssp CEEEEEECTTSCTTS-SCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCS
T ss_pred eEEEEecCCCccccc-ccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccc
Confidence 999999986532211 1122445666789999999999999 9999999999999999998876543332
Q ss_pred ----ccCCCeEEEEEccC---CCEEEEeeCCCcEEEEeCCCCce--eEEeecCCCcEEEEEEEeCC----CEEEEEeCCC
Q 004214 420 ----GHKRGIWSVEFSPV---DQVVITASGDKTIKIWSISDGSC--LKTFEGHTSSVLRASFLTRG----AQIVSCGADG 486 (768)
Q Consensus 420 ----~~~~~v~~v~~s~~---~~~l~t~~~d~~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~~----~~l~s~~~dg 486 (768)
+|...+.+++|+|+ +.++++++.|+.+.+|+...+.. +..+.+|...|++++|+|++ ++|++++.||
T Consensus 161 ~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg 240 (351)
T 3f3f_A 161 IPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDG 240 (351)
T ss_dssp CCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTS
T ss_pred cccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCC
Confidence 57789999999997 89999999999998888887765 77888999999999999998 8999999999
Q ss_pred cEEEEECCCC----------------------------------------------eEEEEeccCCCcEEEEEEcCCCCE
Q 004214 487 LVKLWTVRTG----------------------------------------------ECIATYDKHEDKIWALAVGKKTEM 520 (768)
Q Consensus 487 ~i~iwd~~~~----------------------------------------------~~~~~~~~~~~~v~~l~~s~~~~~ 520 (768)
.|++||+.++ +++..+.+|...|++++|+|++++
T Consensus 241 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~ 320 (351)
T 3f3f_A 241 RIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTI 320 (351)
T ss_dssp CEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCC
T ss_pred eEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCE
Confidence 9999999875 678888899999999999999999
Q ss_pred EEEEeCCCcEEEEEcCCHH
Q 004214 521 FATGGSDALVNLWHDSTAA 539 (768)
Q Consensus 521 l~s~~~dg~v~vw~~~~~~ 539 (768)
|++|+.||.|++|++.++.
T Consensus 321 l~s~~~dg~v~iw~~~~~~ 339 (351)
T 3f3f_A 321 LSSAGDDGKVRLWKATYSN 339 (351)
T ss_dssp EEEEETTSCEEEEEECTTS
T ss_pred EEEecCCCcEEEEecCcCc
Confidence 9999999999999998753
No 107
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=6.6e-33 Score=294.33 Aligned_cols=281 Identities=18% Similarity=0.214 Sum_probs=234.3
Q ss_pred EEEEecCCCCEEEEEeCCCcEEEEECCCce----eeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCc--
Q 004214 244 DLKFLGEEEQYLAVATNIEQVQVYDLSSMS----CSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR-- 317 (768)
Q Consensus 244 ~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~----~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-- 317 (768)
.+++++....++++++.+|.|++|++.... ....+.+|...|.+++ +.+.++.+|++|+.||.|++||+.++
T Consensus 39 ~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~--~~p~~~~~l~s~s~dg~v~vw~~~~~~~ 116 (402)
T 2aq5_A 39 FCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIA--WCPHNDNVIASGSEDCTVMVWEIPDGGL 116 (402)
T ss_dssp SEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEE--ECTTCTTEEEEEETTSEEEEEECCTTCC
T ss_pred cEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEE--eCCCCCCEEEEEeCCCeEEEEEccCCCC
Confidence 355554444455557889999999996642 3446789999999998 77734445999999999999999987
Q ss_pred -----eEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEe--eccCCCeEEEEEcc
Q 004214 318 -----CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVV--AAHGKDINSLAVAP 390 (768)
Q Consensus 318 -----~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~s~ 390 (768)
.++..+.+|...|.+++|+|++..++++++.||.|++||+..+ .....+ ..|...|.+++|+|
T Consensus 117 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~----------~~~~~~~~~~~~~~v~~~~~~~ 186 (402)
T 2aq5_A 117 VLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTG----------AAVLTLGPDVHPDTIYSVDWSR 186 (402)
T ss_dssp SSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTT----------EEEEEECTTTCCSCEEEEEECT
T ss_pred ccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCC----------CccEEEecCCCCCceEEEEECC
Confidence 5677888999999999999998779999999999999999843 344455 67999999999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCceEEEE-eccCCC-eEEEEEccCCCEEEEe---eCCCcEEEEeCCCCce-eEEee-cC
Q 004214 391 NDSLVCTGSQDRTACVWRLPDLVSVVTF-RGHKRG-IWSVEFSPVDQVVITA---SGDKTIKIWSISDGSC-LKTFE-GH 463 (768)
Q Consensus 391 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~-v~~v~~s~~~~~l~t~---~~d~~i~iwd~~~~~~-~~~~~-~~ 463 (768)
++++|++++.||.|++||+++++.+..+ .+|... +.++.|+|++++|++| +.|+.|++||+.++.. +.... .|
T Consensus 187 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 266 (402)
T 2aq5_A 187 DGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDT 266 (402)
T ss_dssp TSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCC
T ss_pred CCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccC
Confidence 9999999999999999999999999988 788776 8999999999999999 7999999999998765 33333 57
Q ss_pred CCcEEEEEEEeCCCEEEE-EeCCCcEEEEECCCCeE-EEEecc--CCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCH
Q 004214 464 TSSVLRASFLTRGAQIVS-CGADGLVKLWTVRTGEC-IATYDK--HEDKIWALAVGKKTEMFATGGSDALVNLWHDSTA 538 (768)
Q Consensus 464 ~~~v~~~~~s~~~~~l~s-~~~dg~i~iwd~~~~~~-~~~~~~--~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~ 538 (768)
...+.+++|+|++++|++ |+.||.|++||+.+++. +..+.. |..+|.+++|+|++.++++ .++.+++|++.++
T Consensus 267 ~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~ 343 (402)
T 2aq5_A 267 SSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHER 343 (402)
T ss_dssp CSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETT
T ss_pred CCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEEcCCC
Confidence 788999999999999975 55799999999999873 444433 5689999999999998775 4668999998764
No 108
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.2e-32 Score=285.91 Aligned_cols=254 Identities=24% Similarity=0.379 Sum_probs=219.5
Q ss_pred eeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCC--CceEEEeeecccCcEEEEEEecCC-CcEEEEEeCC
Q 004214 273 SCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSE--SRCCVGVGTGHMGAVGAVAFSKKL-QNFLVSGSSD 349 (768)
Q Consensus 273 ~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~s~~~d 349 (768)
+....+.+|...|.+++ +.+++.. |++|+.||.|++||+. ++..+..+.+|...|.+++|+++. ..+|++++.|
T Consensus 2 ~~~~~~~~h~~~v~~~~--~s~~~~~-l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d 78 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAV--LDYYGKR-LATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD 78 (379)
T ss_dssp ---CCEEECCCCEEEEE--ECSSSSE-EEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred CccEEecCCcccEEEEE--EcCCCCE-EEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccC
Confidence 45567889999999998 7777765 9999999999999998 667788889999999999998761 3489999999
Q ss_pred CeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccC--CCEEEEEeCCCcEEEEeCCCC--ceEEEEeccCCCe
Q 004214 350 HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN--DSLVCTGSQDRTACVWRLPDL--VSVVTFRGHKRGI 425 (768)
Q Consensus 350 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~v 425 (768)
|.|++||+... ..........|...|.+++|+|+ +.++++++.||.|++||+.+. .....+.+|...|
T Consensus 79 g~v~iwd~~~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v 150 (379)
T 3jrp_A 79 GKVLIWKEENG--------RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGV 150 (379)
T ss_dssp SCEEEEEEETT--------EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCE
T ss_pred CEEEEEEcCCC--------ceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCce
Confidence 99999998753 22355566779999999999999 999999999999999999887 3455677899999
Q ss_pred EEEEEcc-------------CCCEEEEeeCCCcEEEEeCCCCc----eeEEeecCCCcEEEEEEEeC---CCEEEEEeCC
Q 004214 426 WSVEFSP-------------VDQVVITASGDKTIKIWSISDGS----CLKTFEGHTSSVLRASFLTR---GAQIVSCGAD 485 (768)
Q Consensus 426 ~~v~~s~-------------~~~~l~t~~~d~~i~iwd~~~~~----~~~~~~~~~~~v~~~~~s~~---~~~l~s~~~d 485 (768)
.+++|+| ++.+|++++.||.|++||++++. +...+.+|...|++++|+|+ +++|++++.|
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d 230 (379)
T 3jrp_A 151 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQD 230 (379)
T ss_dssp EEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETT
T ss_pred EEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCC
Confidence 9999999 69999999999999999998764 55678899999999999999 8999999999
Q ss_pred CcEEEEECCCCe-----EEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 004214 486 GLVKLWTVRTGE-----CIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDST 537 (768)
Q Consensus 486 g~i~iwd~~~~~-----~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~ 537 (768)
|.|++||+.++. .+.....|...|++++|+|++++|++++.||.|++|++.+
T Consensus 231 g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 231 RTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp SCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred CEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence 999999999874 2233344889999999999999999999999999999874
No 109
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=1e-31 Score=279.19 Aligned_cols=226 Identities=14% Similarity=0.159 Sum_probs=178.4
Q ss_pred cCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCcccccccee
Q 004214 294 SSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAK 373 (768)
Q Consensus 294 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 373 (768)
+.++.++++|+.|+.|++||..+++++..+. +...|.+++++++ .++++ .++.|++||+..... ..
T Consensus 68 ~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~---~~~~~-~~~~i~i~d~~~~~~---------~~ 133 (355)
T 3vu4_A 68 HRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSRE---FIVVS-YGDVISVFKFGNPWK---------RI 133 (355)
T ss_dssp TTSSEEEEECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSS---EEEEE-ETTEEEEEESSTTCC---------BS
T ss_pred CCCCEEEEEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCC---EEEEE-EcCEEEEEECCCCce---------ee
Confidence 4445545778888999999999999988876 6679999999986 34443 478999999986411 11
Q ss_pred eEeeccCCCeEEEEEccCCCEEEE--EeCCCcEEEEeCCCCc---------------e-EEEEeccCCCeEEEEEccCCC
Q 004214 374 AVVAAHGKDINSLAVAPNDSLVCT--GSQDRTACVWRLPDLV---------------S-VVTFRGHKRGIWSVEFSPVDQ 435 (768)
Q Consensus 374 ~~~~~~~~~i~~~~~s~~~~~l~~--~~~dg~i~i~d~~~~~---------------~-~~~~~~~~~~v~~v~~s~~~~ 435 (768)
..... +...+++++ .++++ |+.||.|++||+.++. + +..+.+|..+|++++|+|+|+
T Consensus 134 ~~~~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~ 208 (355)
T 3vu4_A 134 TDDIR---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSD 208 (355)
T ss_dssp SCCEE---EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSS
T ss_pred EEecc---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCC
Confidence 11111 334566677 56666 5899999999999865 2 678899999999999999999
Q ss_pred EEEEeeCCCc-EEEEeCCCCceeEEee-c-CCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEE--EEe--------
Q 004214 436 VVITASGDKT-IKIWSISDGSCLKTFE-G-HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECI--ATY-------- 502 (768)
Q Consensus 436 ~l~t~~~d~~-i~iwd~~~~~~~~~~~-~-~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~-------- 502 (768)
+|++|+.|++ |++||+.+++++.++. + |...|++++|+|+|++|++++.||+|++||+..+... ..+
T Consensus 209 ~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~ 288 (355)
T 3vu4_A 209 MVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKY 288 (355)
T ss_dssp EEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCC
T ss_pred EEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccc
Confidence 9999999998 9999999999999998 6 9999999999999999999999999999999765311 111
Q ss_pred ------------c-cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCH
Q 004214 503 ------------D-KHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTA 538 (768)
Q Consensus 503 ------------~-~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~ 538 (768)
. .+..+...++|++++++|++++.||.+++|++..+
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~ 337 (355)
T 3vu4_A 289 FQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFD 337 (355)
T ss_dssp CCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEE
T ss_pred cccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcC
Confidence 0 11223466899999999999999999999998654
No 110
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.2e-34 Score=298.08 Aligned_cols=304 Identities=9% Similarity=0.005 Sum_probs=234.8
Q ss_pred EEEeecCCCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEec-CccceeEEE
Q 004214 2 FALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLD-KHFSRVTSM 80 (768)
Q Consensus 2 ~latg~~dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~-~h~~~V~~l 80 (768)
++|+++.|++|+ |...++++ .||...|.+++|+|+| .++.+.+|+. +....+. .|...|.++
T Consensus 29 ~iASas~D~TV~--d~~~~~~l---~gh~~~v~~V~FsPdg---------~~~~~~~~~~---~~~~~~~~~~~~~V~~v 91 (588)
T 2j04_A 29 LYLTTFPDISIG--QPKYAKDI---NCNSKNLFHVKEFPLE---------FENKLDFELA---QQNGLLNSQPVCYPRVC 91 (588)
T ss_dssp EEEECSSSEEEE--EECCCSCC---SSBGGGTEEEEEECCC---------CCCTTTTSCC---CSSCSSTTSCSCCEEEE
T ss_pred EEEEEcCCceee--ccccccee---cCCCccEEEEEECCCC---------CcceEEEEeC---CCceEeecCCCCcEEEE
Confidence 689999999999 87777544 7999999999999988 3555555554 3333333 468889999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCc
Q 004214 81 AITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERG 160 (768)
Q Consensus 81 ~fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 160 (768)
+|||||++||+++.||.|++||.++ ++..+. +..
T Consensus 92 awSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~------------------------------------------- 125 (588)
T 2j04_A 92 KPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKG------------------------------------------- 125 (588)
T ss_dssp EECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSS-------------------------------------------
T ss_pred EECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCC-------------------------------------------
Confidence 9999999999999999999999543 111111 000
Q ss_pred EEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCC
Q 004214 161 IVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNE 240 (768)
Q Consensus 161 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (768)
.-...
T Consensus 126 ---------------------------------------------------------------------------~~~~~ 130 (588)
T 2j04_A 126 ---------------------------------------------------------------------------NLSSR 130 (588)
T ss_dssp ---------------------------------------------------------------------------CSTTT
T ss_pred ---------------------------------------------------------------------------ccccc
Confidence 00012
Q ss_pred ceeEEEEecCCCCEEEEEeCCCcEEEEECCCcee-------eeee----eCCccceEEEeeeeecCCCEEEEEEeCCCeE
Q 004214 241 EILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSC-------SYVL----AGHSEIVLCLDTCALSSGKILIVTGSKDNSV 309 (768)
Q Consensus 241 ~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~-------~~~~----~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i 309 (768)
.+.+++|+| ++++|++|+.||.|++||+.++.. +..+ .+|...|.+++ ++|++ +++++.|+.|
T Consensus 131 sv~svafSP-DG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVa--wSPdg---Laass~D~tV 204 (588)
T 2j04_A 131 TYHCFEWNP-IESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIV--WYEDV---LVAALSNNSV 204 (588)
T ss_dssp CEEEEEECS-SSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEE--EETTE---EEEEETTCCE
T ss_pred cEEEEEEcC-CCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEE--EcCCc---EEEEeCCCeE
Confidence 466777764 778888888888888888887752 4555 67888999998 77765 7888899999
Q ss_pred EEEeCCCceE---EEee-ecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEE
Q 004214 310 RLWDSESRCC---VGVG-TGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINS 385 (768)
Q Consensus 310 ~iwd~~~~~~---~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 385 (768)
++||+.++.. ...+ .+|...|.+++|+ +. .+++++ +++|++||+... .......+|...|..
T Consensus 205 rlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~-~LASa~-~~tIkLWd~~~~----------~~~~~~~gh~~~V~~ 270 (588)
T 2j04_A 205 FSMTVSASSHQPVSRMIQNASRRKITDLKIV--DY-KVVLTC-PGYVHKIDLKNY----------SISSLKTGSLENFHI 270 (588)
T ss_dssp EEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TT-EEEEEC-SSEEEEEETTTT----------EEEEEECSCCSCCCE
T ss_pred EEEECCCCccccceeeecccccCcEEEEEEE--CC-EEEEEe-CCeEEEEECCCC----------eEEEEEcCCCceEEE
Confidence 9999988773 3455 4788999999999 34 788887 699999998743 222333379999999
Q ss_pred EEE--ccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecC
Q 004214 386 LAV--APNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGH 463 (768)
Q Consensus 386 ~~~--s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~ 463 (768)
++| +|++..+++++.||+ ++|..+ .++++|++..+++. |+++++|+...+ .+..+.+
T Consensus 271 va~~~s~d~~~La~a~edG~-klw~~d----------------~~~~spd~~l~a~~--d~~v~lW~~~g~-~l~~~~~- 329 (588)
T 2j04_A 271 IPLNHEKESTILLMSNKTSY-KVLLED----------------ELHVTADNIIAPYL--EKKFKKWSTIWN-EFNNYET- 329 (588)
T ss_dssp EEETTCSSCEEEEECSSCEE-EEEESS----------------SEEEECCCSSHHHH--HHHHHHTTTTTT-SSSSSCC-
T ss_pred EEeeeCCCCCEEEEEcCCCC-EEEeec----------------cEEECCCceEEEEc--CCEEEEEECCCC-ceeeecc-
Confidence 999 999999999999999 999977 26699999888775 899999997544 4555654
Q ss_pred CCcEEEEEEEeCCCEEEEEeC
Q 004214 464 TSSVLRASFLTRGAQIVSCGA 484 (768)
Q Consensus 464 ~~~v~~~~~s~~~~~l~s~~~ 484 (768)
...|.+++|+|||+.+|+++.
T Consensus 330 ~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 330 TLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp EEEEEEEEECTTSSEEEEEEE
T ss_pred ceEEEEEEECCCCCEEEEEEe
Confidence 778999999999999998863
No 111
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=2.1e-31 Score=279.20 Aligned_cols=286 Identities=18% Similarity=0.194 Sum_probs=238.4
Q ss_pred EeeecccCCceeEEEEecCC--CCEEEEEeCCCcEEEEECCC-ceee-eeeeCCccceEEEeeeeecCCCEEEEEEeCCC
Q 004214 232 SKRLVGYNEEILDLKFLGEE--EQYLAVATNIEQVQVYDLSS-MSCS-YVLAGHSEIVLCLDTCALSSGKILIVTGSKDN 307 (768)
Q Consensus 232 ~~~~~~~~~~i~~~~~~~~~--~~~l~~~~~~~~i~i~d~~~-~~~~-~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg 307 (768)
...+.+|.+.|.+++|++.. +.+|++++.+|.|++||+.+ +... ..+.+|...|.++. +.+++.. |++++.||
T Consensus 32 ~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~--~~~~~~~-l~s~~~dg 108 (368)
T 3mmy_A 32 IEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVC--WSDDGSK-VFTASCDK 108 (368)
T ss_dssp EECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEE--ECTTSSE-EEEEETTS
T ss_pred eEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEE--ECcCCCE-EEEEcCCC
Confidence 34667899999999999866 79999999999999999997 4444 67889999999997 7776665 99999999
Q ss_pred eEEEEeCCCceEEEeeecccCcEEEEEE--ecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEE
Q 004214 308 SVRLWDSESRCCVGVGTGHMGAVGAVAF--SKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINS 385 (768)
Q Consensus 308 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 385 (768)
.|++||+.+++... ...|...|.+++| +|++. ++++++.||.|++||+.... .......+ ..+.+
T Consensus 109 ~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~----------~~~~~~~~-~~~~~ 175 (368)
T 3mmy_A 109 TAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYS-CVMTGSWDKTLKFWDTRSSN----------PMMVLQLP-ERCYC 175 (368)
T ss_dssp EEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCE-EEEEEETTSEEEEECSSCSS----------CSEEEECS-SCEEE
T ss_pred cEEEEEcCCCCcee-eccccCceEEEEEEeCCCCC-EEEEccCCCcEEEEECCCCc----------EEEEEecC-CCceE
Confidence 99999999998776 5669999999999 77754 79999999999999998542 22333333 35555
Q ss_pred EEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEe--ccCCCeEEEEEccCCCE----EEEeeCCCcEEEEeCCCC---ce
Q 004214 386 LAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFR--GHKRGIWSVEFSPVDQV----VITASGDKTIKIWSISDG---SC 456 (768)
Q Consensus 386 ~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~v~~v~~s~~~~~----l~t~~~d~~i~iwd~~~~---~~ 456 (768)
+.+. +..+++++.++.+.+|++.......... .+...+.++++.++... +++++.||.|++||+... ..
T Consensus 176 ~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~ 253 (368)
T 3mmy_A 176 ADVI--YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKD 253 (368)
T ss_dssp EEEE--TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHH
T ss_pred EEec--CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCcccc
Confidence 5555 4588899999999999998765443322 24456677777766554 999999999999999887 66
Q ss_pred eEEeecCCC------------cEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEE
Q 004214 457 LKTFEGHTS------------SVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATG 524 (768)
Q Consensus 457 ~~~~~~~~~------------~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~ 524 (768)
+..+.+|.. +|++++|+|++++|++++.||.|++||+.+++++..+..|..+|++++|+|++++|+++
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~ 333 (368)
T 3mmy_A 254 NFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYA 333 (368)
T ss_dssp SEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEE
T ss_pred ceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEE
Confidence 788888876 79999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCcEEEEEc
Q 004214 525 GSDALVNLWHD 535 (768)
Q Consensus 525 ~~dg~v~vw~~ 535 (768)
+.|+..+.|++
T Consensus 334 s~d~~~~~~~~ 344 (368)
T 3mmy_A 334 SSYDWSKGHEF 344 (368)
T ss_dssp ECCCSTTCGGG
T ss_pred ecccccccccc
Confidence 99986555543
No 112
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=100.00 E-value=6.3e-30 Score=304.16 Aligned_cols=432 Identities=9% Similarity=0.006 Sum_probs=320.5
Q ss_pred CCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEeCC------CeEEEEE
Q 004214 29 HKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRD------KVVNLWD 102 (768)
Q Consensus 29 h~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~d------g~i~vWd 102 (768)
+.+.+.+.+||| +. |+.++. +.|.+|++.+++. ..+.+|...+.+++|||||++|++++.+ ..|.+||
T Consensus 13 ~~~~~~~~~~S~--~~--iaf~~~-~~l~~~~~~gg~~-~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d 86 (1045)
T 1k32_A 13 MPNLLLNPDIHG--DR--IIFVCC-DDLWEHDLKSGST-RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYN 86 (1045)
T ss_dssp CCCCCEEEEEET--TE--EEEEET-TEEEEEETTTCCE-EEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEE
T ss_pred ccceEeCcEEeC--CE--EEEEEC-CcEEEEECCCCcE-EEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEE
Confidence 567889999996 44 666654 6899999987764 5677899999999999999999988643 4799999
Q ss_pred CCCCeeeeeeecceeE-------eeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCC------cEEEEEEcCC
Q 004214 103 LRDYSCKLTVPTYEMV-------EAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGER------GIVRMWNADS 169 (768)
Q Consensus 103 ~~~~~~~~~~~~~~~v-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------g~i~iwd~~~ 169 (768)
+.+++......+...+ ..++|+|++. .+++++.+ ..|..|++.+
T Consensus 87 ~~~g~~~~lt~~~~~~~~~~~~~~~~~~SpDg~-----------------------ll~~~~~~~~~~~~~~l~~~~~~~ 143 (1045)
T 1k32_A 87 GENGEIKRITYFSGKSTGRRMFTDVAGFDPDGN-----------------------LIISTDAMQPFSSMTCLYRVENDG 143 (1045)
T ss_dssp TTTTEEEECCCCCEEEETTEECSEEEEECTTCC-----------------------EEEEECTTSSSTTCCEEEEEEGGG
T ss_pred CCCCCeEEcccCCCcccccccccccccCCCCCE-----------------------EEEEECCcCCCcccceEEEEECCC
Confidence 9998754433444456 7899999986 34444432 4688888877
Q ss_pred ceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEe------------cCeEEEEeeccCcccceeeEEEeeecc
Q 004214 170 ACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTA------------DQQLLLYTTVEVPEKKMELILSKRLVG 237 (768)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------------dg~i~~~~~~~~~~~~~~~~~~~~~~~ 237 (768)
+........ ......++| + .++.+.. +....+|...... ....+.+
T Consensus 144 g~~~~l~~~-------------~~~~~~~sp-G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~-------~~~~l~~ 201 (1045)
T 1k32_A 144 INFVPLNLG-------------PATHILFAD-G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSG-------AFKKIVD 201 (1045)
T ss_dssp TEEEECCSC-------------SCSEEEEET-T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETT-------EEEEEEC
T ss_pred CCeEEecCC-------------CcceeeeCC-C-EEEEeccCCCccccccccCCCcCCEEEECCCC-------CeEECcC
Confidence 743221111 112344777 5 4444331 2334455433221 1123368
Q ss_pred cCCceeEEEEecCCCCEEEEEeCCCcEEEEECCC-ceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCC
Q 004214 238 YNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSS-MSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES 316 (768)
Q Consensus 238 ~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~-~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 316 (768)
|...+.++.|++. .+++++..++.+.+|.+.. +.....+..|.. +.+.. +++++.. ++.+ .++.|++|+...
T Consensus 202 ~~~~v~~~~~s~d--~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~-~~~~~--~SpDG~~-la~~-~~~~i~~~d~~~ 274 (1045)
T 1k32_A 202 MSTHVSSPVIVGH--RIYFITDIDGFGQIYSTDLDGKDLRKHTSFTD-YYPRH--LNTDGRR-ILFS-KGGSIYIFNPDT 274 (1045)
T ss_dssp CSSCCEEEEEETT--EEEEEECTTSSCEEEEEETTSCSCEECCCCCS-SCEEE--EEESSSC-EEEE-ETTEEEEECTTT
T ss_pred CCCcccceEEeCC--EEEEEEeccCceEEEEEeCCCCcceEecCCCC-cceee--EcCCCCE-EEEE-eCCEEEEecCCc
Confidence 8899999999854 6667777888889987653 334445555543 34444 6788876 6655 489999999955
Q ss_pred ceEEEeeec-----------ccCcEEEEEEe-cCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCC-Ce
Q 004214 317 RCCVGVGTG-----------HMGAVGAVAFS-KKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGK-DI 383 (768)
Q Consensus 317 ~~~~~~~~~-----------~~~~v~~~~~~-~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~i 383 (768)
.... .+.. |...+.+++|+ |+|+. +++++ ++.|.+|++.... ......|.. .+
T Consensus 275 ~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~-la~~~-~~~i~~~~~~~~~-----------~~~~~~~~~~~~ 340 (1045)
T 1k32_A 275 EKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDL-IAFVS-RGQAFIQDVSGTY-----------VLKVPEPLRIRY 340 (1045)
T ss_dssp CCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGC-EEEEE-TTEEEEECTTSSB-----------EEECSCCSCEEE
T ss_pred eEee-eeccCcccccccccccccccceeeecCCCCCE-EEEEE-cCEEEEEcCCCCc-----------eEEccCCCcceE
Confidence 5443 4444 34578999999 99874 55555 8899999986431 122344555 78
Q ss_pred EEEEEccCCCEEEEEeCCCcEE-EEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeec
Q 004214 384 NSLAVAPNDSLVCTGSQDRTAC-VWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEG 462 (768)
Q Consensus 384 ~~~~~s~~~~~l~~~~~dg~i~-i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~ 462 (768)
.+++|+ +|+.+++++.++.+. +|++.+++... +.+|...+.+++|+|+|++|++++.++.|++||+.+++....+.+
T Consensus 341 ~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~ 418 (1045)
T 1k32_A 341 VRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEK-FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERS 418 (1045)
T ss_dssp EEECSS-SEEEEEEEETTEEEEEEEETTTCCEEE-CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred EeeeEc-CCCeEEEEECCCceEEEEECCCCCceE-ecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccC
Confidence 999999 999999999888888 99998776544 447888999999999999999999999999999999998888888
Q ss_pred CCCcEEEEEEEeCCCEEEEEeCCC----------cEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEE
Q 004214 463 HTSSVLRASFLTRGAQIVSCGADG----------LVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNL 532 (768)
Q Consensus 463 ~~~~v~~~~~s~~~~~l~s~~~dg----------~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~v 532 (768)
|...+..++|+|||++|++++.++ .|++||+.+++ +..+..|...+.+++|+|||++|+.++.++...+
T Consensus 419 ~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~ 497 (1045)
T 1k32_A 419 REAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPS 497 (1045)
T ss_dssp SSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCE
T ss_pred CCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcC
Confidence 999999999999999998887654 89999999988 6677778889999999999999999998887777
Q ss_pred EEc
Q 004214 533 WHD 535 (768)
Q Consensus 533 w~~ 535 (768)
|+.
T Consensus 498 ~~~ 500 (1045)
T 1k32_A 498 PDR 500 (1045)
T ss_dssp ECS
T ss_pred cch
Confidence 764
No 113
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=2.8e-31 Score=275.79 Aligned_cols=305 Identities=13% Similarity=0.153 Sum_probs=196.4
Q ss_pred EEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEE-EE
Q 004214 14 VWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLI-SA 92 (768)
Q Consensus 14 vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~-s~ 92 (768)
||++.+...++.+.+|.+.|++++|+|||+. |++|+.++ ++|||+.+++.+.....+ .+..+++.+++++++ ++
T Consensus 3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~--la~g~~~~-~~iw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 77 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSC--LILSTLKS-FEIYNVHPVAHIMSQEMR--HLSKVRMLHRTNYVAFVT 77 (355)
T ss_dssp ----------------CCCCCEEEECTTSSE--EEEECSSE-EEEEEETTEEEEEEEECS--CCCEEEECTTSSEEEEEC
T ss_pred cccccccCCccccccCCCceEEEEECCCCCE--EEEEcCCE-EEEEecCCcceeeeeecC--CeEEEEEcCCCCEEEEEE
Confidence 5677777778888999999999999999987 89888776 789999988877655433 488889999888884 56
Q ss_pred eCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCcee
Q 004214 93 GRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACL 172 (768)
Q Consensus 93 ~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~ 172 (768)
+.|+.|++||+.+++++..+....
T Consensus 78 ~~d~~v~iWd~~~~~~~~~~~~~~-------------------------------------------------------- 101 (355)
T 3vu4_A 78 GVKEVVHIWDDVKKQDVSRIKVDA-------------------------------------------------------- 101 (355)
T ss_dssp SSTTEEEEEETTTTEEEEEEECSS--------------------------------------------------------
T ss_pred CCccEEEEEECCCCcEEEEEECCC--------------------------------------------------------
Confidence 778999999998887655443322
Q ss_pred eeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCC
Q 004214 173 YEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEE 252 (768)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 252 (768)
.|.++.+.+
T Consensus 102 --------------------------------------------------------------------~v~~v~~~~--- 110 (355)
T 3vu4_A 102 --------------------------------------------------------------------PVKDLFLSR--- 110 (355)
T ss_dssp --------------------------------------------------------------------CEEEEEECS---
T ss_pred --------------------------------------------------------------------ceEEEEEcC---
Confidence 223333321
Q ss_pred CEEEEEeCCCcEEEEECCCc-eeeeeeeCCccceEEEeeeeecCCCEEEEE-EeCCCeEEEEeCCCceEEEeeecccCcE
Q 004214 253 QYLAVATNIEQVQVYDLSSM-SCSYVLAGHSEIVLCLDTCALSSGKILIVT-GSKDNSVRLWDSESRCCVGVGTGHMGAV 330 (768)
Q Consensus 253 ~~l~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~v 330 (768)
..++++. ++.|++||+.++ +.+..+.. ...+.+ +.+ ..++++ |+.||.|++||+.++.......
T Consensus 111 ~~~~~~~-~~~i~i~d~~~~~~~~~~~~~-~~~~~~----~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~------ 176 (355)
T 3vu4_A 111 EFIVVSY-GDVISVFKFGNPWKRITDDIR-FGGVCE----FSN--GLLVYSNEFNLGQIHITKLQSSGSATTQD------ 176 (355)
T ss_dssp SEEEEEE-TTEEEEEESSTTCCBSSCCEE-EEEEEE----EET--TEEEEEESSCTTCEEEEECCC--------------
T ss_pred CEEEEEE-cCEEEEEECCCCceeeEEecc-CCceEE----EEc--cEEEEeCCCcCcEEEEEECCCCCcccccc------
Confidence 1222222 355666665554 33333332 111111 111 221222 4556666666655543211000
Q ss_pred EEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccce-eeEeeccCCCeEEEEEccCCCEEEEEeCCCc-EEEEe
Q 004214 331 GAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKA-KAVVAAHGKDINSLAVAPNDSLVCTGSQDRT-ACVWR 408 (768)
Q Consensus 331 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~-i~i~d 408 (768)
.. . ......+ ...+.+|...|++++|+|+|++|++|+.||+ |++||
T Consensus 177 ---------~~-~----------------------~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd 224 (355)
T 3vu4_A 177 ---------QG-V----------------------QQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFK 224 (355)
T ss_dssp ------------------------------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEE
T ss_pred ---------cc-c----------------------cccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEE
Confidence 00 0 0001112 4566789999999999999999999999998 99999
Q ss_pred CCCCceEEEEe-c-cCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCce--eEEee---------------------cC
Q 004214 409 LPDLVSVVTFR-G-HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSC--LKTFE---------------------GH 463 (768)
Q Consensus 409 ~~~~~~~~~~~-~-~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~--~~~~~---------------------~~ 463 (768)
+.+++.+..+. + |...|++++|+|++++|++++.|++|++||+..+.. ...+. .+
T Consensus 225 ~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (355)
T 3vu4_A 225 TEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDK 304 (355)
T ss_dssp TTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCT
T ss_pred CCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCC
Confidence 99999999998 5 999999999999999999999999999999976532 11111 11
Q ss_pred CCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCC
Q 004214 464 TSSVLRASFLTRGAQIVSCGADGLVKLWTVRTG 496 (768)
Q Consensus 464 ~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 496 (768)
......++|+++|++|++++.||.+++|++..+
T Consensus 305 ~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~ 337 (355)
T 3vu4_A 305 HVRGCKIAWISESSLVVVWPHTRMIETFKVVFD 337 (355)
T ss_dssp TCCCCEEEESSSSEEEEEETTTTEEEEEEEEEE
T ss_pred CCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcC
Confidence 223366899999999999999999999987653
No 114
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=1.4e-29 Score=271.83 Aligned_cols=278 Identities=9% Similarity=0.049 Sum_probs=235.1
Q ss_pred ceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeee-----eeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCC
Q 004214 241 EILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSY-----VLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSE 315 (768)
Q Consensus 241 ~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~-----~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~ 315 (768)
.+.+++|++ ++.++++++.++.|++||+.+++... .+.+|...+.++. + ++++.++++++.|+.|++||+.
T Consensus 124 ~~~~~~~s~-~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~--~-~~~~~~~~s~~~d~~v~~~d~~ 199 (433)
T 3bws_A 124 QPKSVRFID-NTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETIS--I-PEHNELWVSQMQANAVHVFDLK 199 (433)
T ss_dssp CBCCCEESS-SSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEE--E-GGGTEEEEEEGGGTEEEEEETT
T ss_pred CceEEEEeC-CCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEE--E-cCCCEEEEEECCCCEEEEEECC
Confidence 456788887 77788888888999999999998876 4457888999986 5 4445569999999999999999
Q ss_pred CceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEE
Q 004214 316 SRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLV 395 (768)
Q Consensus 316 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 395 (768)
+++.+..+..|...+.+++|+|++..++++++.|+.|++||+..+. ...... +...+.+++|+|+++.+
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~----------~~~~~~-~~~~~~~~~~~~~g~~l 268 (433)
T 3bws_A 200 TLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKL----------EIRKTD-KIGLPRGLLLSKDGKEL 268 (433)
T ss_dssp TCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTE----------EEEECC-CCSEEEEEEECTTSSEE
T ss_pred CceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCc----------EEEEec-CCCCceEEEEcCCCCEE
Confidence 9999999999999999999999988655677789999999997431 222222 34558999999999999
Q ss_pred EEEe--------CCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCE-EEEeeCCCcEEEEeCCCCceeEEeecCCCc
Q 004214 396 CTGS--------QDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQV-VITASGDKTIKIWSISDGSCLKTFEGHTSS 466 (768)
Q Consensus 396 ~~~~--------~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~-l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~ 466 (768)
++++ .||.|++||+.+++....+ .|...+.+++|+|+++. +++++.|+.|++||+.+++.+..+. +...
T Consensus 269 ~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~ 346 (433)
T 3bws_A 269 YIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDK 346 (433)
T ss_dssp EEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSS
T ss_pred EEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCC
Confidence 9988 5889999999998877765 46668999999999975 5666899999999999999888887 7788
Q ss_pred EEEEEEEeCCCEEEEEeC---------------CCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeC-CCcE
Q 004214 467 VLRASFLTRGAQIVSCGA---------------DGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGS-DALV 530 (768)
Q Consensus 467 v~~~~~s~~~~~l~s~~~---------------dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~-dg~v 530 (768)
+.+++|+|+|++|++++. ||.|++||+.+++.+..+.. ...+.+++|+|+|++|++++. |+.|
T Consensus 347 ~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i 425 (433)
T 3bws_A 347 PNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQI 425 (433)
T ss_dssp EEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSCEEEEEETTTTEE
T ss_pred CCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC-CCCCceEEEcCCCCEEEEEECCCCeE
Confidence 999999999999988876 57999999999999998875 567899999999999998875 9999
Q ss_pred EEEEcC
Q 004214 531 NLWHDS 536 (768)
Q Consensus 531 ~vw~~~ 536 (768)
++|++.
T Consensus 426 ~v~~~~ 431 (433)
T 3bws_A 426 RVYRRD 431 (433)
T ss_dssp EEEEET
T ss_pred EEEEec
Confidence 999976
No 115
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=100.00 E-value=3.7e-30 Score=252.82 Aligned_cols=159 Identities=11% Similarity=0.169 Sum_probs=133.8
Q ss_pred EeeccCCCeEEEEEcc---CCCEEEEEeCCCcEEEEeCCCCceEEEEeccCC---CeEEEEEccCCCEE-----------
Q 004214 375 VVAAHGKDINSLAVAP---NDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKR---GIWSVEFSPVDQVV----------- 437 (768)
Q Consensus 375 ~~~~~~~~i~~~~~s~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---~v~~v~~s~~~~~l----------- 437 (768)
....|...++.++|+| ++.+|++|+.|++|+|||+.+++.+.++.+|.. .+.+++|+|+|.++
T Consensus 173 s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~ 252 (356)
T 2w18_A 173 NQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKES 252 (356)
T ss_dssp EEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC-------
T ss_pred eeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcce
Confidence 4456788888999999 789999999999999999999999999987543 67788999999876
Q ss_pred -EEeeCCCcEEEEeCCCCceeEEe-----ecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEE-
Q 004214 438 -ITASGDKTIKIWSISDGSCLKTF-----EGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIW- 510 (768)
Q Consensus 438 -~t~~~d~~i~iwd~~~~~~~~~~-----~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~- 510 (768)
++|+.|++|++||..+++++..+ .+|...+.+..+ ++.++++++.||+|+|||+.+++++.++.+|...+.
T Consensus 253 laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs 330 (356)
T 2w18_A 253 ESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWS 330 (356)
T ss_dssp -----CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCC
T ss_pred eeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEE
Confidence 56788999999999999988776 377766554444 488999999999999999999999999999988765
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEc
Q 004214 511 ALAVGKKTEMFATGGSDALVNLWHD 535 (768)
Q Consensus 511 ~l~~s~~~~~l~s~~~dg~v~vw~~ 535 (768)
+++|+|||++|++|+.|++|+||+.
T Consensus 331 ~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 331 FVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEEECSSSSEEEEECTTSCEEEEEE
T ss_pred EEEECCCCCEEEEEECCCcEEEecC
Confidence 5899999999999999999999985
No 116
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-30 Score=279.84 Aligned_cols=285 Identities=12% Similarity=0.119 Sum_probs=234.0
Q ss_pred CceeEEEEecCCCCEEEEEeCCCcEEEEECCCce---eeeeeeC------------------------------------
Q 004214 240 EEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMS---CSYVLAG------------------------------------ 280 (768)
Q Consensus 240 ~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~---~~~~~~~------------------------------------ 280 (768)
.++.+++|++ ++++++++ .++.|++||+.+++ .+..+..
T Consensus 5 ~p~~~v~~s~-dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 5 HPLQNLLTSR-DGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp CCCCEEEECS-SSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred ccEEEEEecC-CCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 4678888876 44555555 56899999999888 5555443
Q ss_pred ------------------CccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCC--CceEEEeee--cccCcEEEEEEecC
Q 004214 281 ------------------HSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSE--SRCCVGVGT--GHMGAVGAVAFSKK 338 (768)
Q Consensus 281 ------------------~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~--~~~~~v~~~~~~~~ 338 (768)
|...|.+++ +.+++..++++|+.||.|++||+. ++..+..+. .|...|.+++|+|+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~--~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 160 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYSYIRNLR--LTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAED 160 (450)
T ss_dssp -----------------CCCCCEEEEE--ECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTT
T ss_pred cccccCccccCCCCCCCccCCceEEEE--EcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCC
Confidence 333688887 778888756999999999999999 888887776 56789999999999
Q ss_pred CCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccC---CCEEEEEeCCCcEEEEeCCCCceE
Q 004214 339 LQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN---DSLVCTGSQDRTACVWRLPDLVSV 415 (768)
Q Consensus 339 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~---~~~l~~~~~dg~i~i~d~~~~~~~ 415 (768)
+. +|++++.+|.|++|++....... .....+.+|...|++++|+|+ +++|++|+.|+.|++||+.+++.+
T Consensus 161 ~~-~l~~~~~~g~v~~~~~~~~~~~~------~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~ 233 (450)
T 2vdu_B 161 DT-TVIIADKFGDVYSIDINSIPEEK------FTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIV 233 (450)
T ss_dssp SS-EEEEEETTSEEEEEETTSCCCSS------CCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCE
T ss_pred CC-EEEEEeCCCcEEEEecCCccccc------ccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCcee
Confidence 76 89999999999999987553211 022245678999999999999 999999999999999999999888
Q ss_pred EE-EeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeec-------------------------CCCcEEE
Q 004214 416 VT-FRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEG-------------------------HTSSVLR 469 (768)
Q Consensus 416 ~~-~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~-------------------------~~~~v~~ 469 (768)
.. +.+|...|++++|+ ++++|++++.|+.|++||+.+++++..+.. +...|.+
T Consensus 234 ~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 312 (450)
T 2vdu_B 234 DKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSK 312 (450)
T ss_dssp EEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEE
T ss_pred eeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEE
Confidence 77 55899999999999 999999999999999999999999988863 2357899
Q ss_pred EEEEeCCCEEEEEe-CCCcEEEEEC--CCC---eEEEEeccCCCcEEEEEEcCCCCEEEEEeC------CCcEEEEEcCC
Q 004214 470 ASFLTRGAQIVSCG-ADGLVKLWTV--RTG---ECIATYDKHEDKIWALAVGKKTEMFATGGS------DALVNLWHDST 537 (768)
Q Consensus 470 ~~~s~~~~~l~s~~-~dg~i~iwd~--~~~---~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~------dg~v~vw~~~~ 537 (768)
++|+|++++|++++ .|+.|++|++ .++ +.+..+..| +.|++++|+|++.++++++. +..|.+|.+..
T Consensus 313 i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 313 IIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp EEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred EEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEc
Confidence 99999999999999 8999999999 666 778888877 88999999996544443332 55688887654
No 117
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=5e-31 Score=279.84 Aligned_cols=294 Identities=16% Similarity=0.224 Sum_probs=236.0
Q ss_pred cEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCe----eEEEecCccceeEEEEEcC-CCCEEEEEeCCCeEEEEECCCC
Q 004214 32 VVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK----CVATLDKHFSRVTSMAITS-DGSTLISAGRDKVVNLWDLRDY 106 (768)
Q Consensus 32 ~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~----~~~~l~~h~~~V~~l~fs~-d~~~L~s~~~dg~i~vWd~~~~ 106 (768)
....++++|+.. .++++|+.||.|+|||+.+.. .+..+.+|.+.|++++|+| ++++|++++.||.|++||+.++
T Consensus 36 ~~~~~~~~~~~~-~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~ 114 (402)
T 2aq5_A 36 DSGFCAVNPKFM-ALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDG 114 (402)
T ss_dssp SSCSEEECSSEE-EEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTT
T ss_pred CCCcEEECCCeE-EEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCC
Confidence 344688888643 345568999999999996542 3556789999999999999 9999999999999999999875
Q ss_pred eeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccc
Q 004214 107 SCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEM 186 (768)
Q Consensus 107 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~ 186 (768)
.......
T Consensus 115 ~~~~~~~------------------------------------------------------------------------- 121 (402)
T 2aq5_A 115 GLVLPLR------------------------------------------------------------------------- 121 (402)
T ss_dssp CCSSCBC-------------------------------------------------------------------------
T ss_pred CCccccC-------------------------------------------------------------------------
Confidence 3211000
Q ss_pred cCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEE
Q 004214 187 DDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQV 266 (768)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i 266 (768)
.....+.+|...|.+++|++.+..++++++.|+.|++
T Consensus 122 -------------------------------------------~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~i 158 (402)
T 2aq5_A 122 -------------------------------------------EPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILV 158 (402)
T ss_dssp -------------------------------------------SCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEE
T ss_pred -------------------------------------------CceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEE
Confidence 0112344677889999999876789999999999999
Q ss_pred EECCCceeeeee--eCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEee-ecccCc-EEEEEEecCCCcE
Q 004214 267 YDLSSMSCSYVL--AGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVG-TGHMGA-VGAVAFSKKLQNF 342 (768)
Q Consensus 267 ~d~~~~~~~~~~--~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~-v~~~~~~~~~~~~ 342 (768)
||+.+++....+ .+|...|.+++ +.+++.. |++++.||.|++||+.+++.+..+ .+|.+. +.+++|+|++. +
T Consensus 159 wd~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 234 (402)
T 2aq5_A 159 WDVGTGAAVLTLGPDVHPDTIYSVD--WSRDGAL-ICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGK-I 234 (402)
T ss_dssp EETTTTEEEEEECTTTCCSCEEEEE--ECTTSSC-EEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTE-E
T ss_pred EECCCCCccEEEecCCCCCceEEEE--ECCCCCE-EEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCc-E
Confidence 999999999998 88999999998 6676665 999999999999999999999888 788776 89999999965 7
Q ss_pred EEEE---eCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEE-EeCCCcEEEEeCCCCce-EEE
Q 004214 343 LVSG---SSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCT-GSQDRTACVWRLPDLVS-VVT 417 (768)
Q Consensus 343 l~s~---~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~-~~~dg~i~i~d~~~~~~-~~~ 417 (768)
+++| +.|+.|++||+..... ........|...+.+++|+|+++++++ |+.||.|++||+.+++. +..
T Consensus 235 l~~g~~~~~d~~i~iwd~~~~~~--------~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~ 306 (402)
T 2aq5_A 235 LTTGFSRMSERQVALWDTKHLEE--------PLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHY 306 (402)
T ss_dssp EEEEECTTCCEEEEEEETTBCSS--------CSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEE
T ss_pred EEEeccCCCCceEEEEcCccccC--------CceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEe
Confidence 8888 7999999999985421 112222356788999999999999875 55799999999998874 555
Q ss_pred Eec--cCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCce
Q 004214 418 FRG--HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSC 456 (768)
Q Consensus 418 ~~~--~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~ 456 (768)
+.. |..+|.+++|+|++.++++ .++.+++|++.++.+
T Consensus 307 l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 307 LSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHERKC 345 (402)
T ss_dssp EEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTEE
T ss_pred ecccccCCcccceEEeccccccee--cceeEEEEEcCCCcE
Confidence 544 4589999999999988764 457999999977653
No 118
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=100.00 E-value=2.5e-30 Score=253.99 Aligned_cols=278 Identities=13% Similarity=0.093 Sum_probs=200.9
Q ss_pred ecCCCcEEEEECCCC---EEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEE
Q 004214 6 EGADRKVLVWDVDGG---FCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAI 82 (768)
Q Consensus 6 g~~dg~i~vwd~~~~---~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~f 82 (768)
......|++|++.++ ++++++.+|+.+|..++|.||... ++..+ --.-|...|.+++|
T Consensus 59 ~~~~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~------------------~~~~~~~~v~sla~ 119 (356)
T 2w18_A 59 TACEDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYN-LVCVA------------------LGNLEIREIRALFC 119 (356)
T ss_dssp EEESSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCS-CEEEE------------------ECSSSEEEEEEECC
T ss_pred EeccceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccc-eeeee------------------eccccccceEEEEE
Confidence 345789999999998 899999999999999999998654 22221 11226677999999
Q ss_pred cCC----CCEEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeC
Q 004214 83 TSD----GSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGE 158 (768)
Q Consensus 83 s~d----~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (768)
+|| ++++++++. .+.+|++.+++.+
T Consensus 120 spd~~~~~~~l~s~g~--~~~v~~l~~g~lv------------------------------------------------- 148 (356)
T 2w18_A 120 SSDDESEKQVLLKSGN--IKAVLGLTKRRLV------------------------------------------------- 148 (356)
T ss_dssp ------CCEEEEEEEE--EEEEEEETTTEEE-------------------------------------------------
T ss_pred CCCccccccEEEeCCC--eEEEEecCCCcEE-------------------------------------------------
Confidence 999 899999884 3777876443311
Q ss_pred CcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeeccc
Q 004214 159 RGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGY 238 (768)
Q Consensus 159 ~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~ 238 (768)
T Consensus 149 -------------------------------------------------------------------------------- 148 (356)
T 2w18_A 149 -------------------------------------------------------------------------------- 148 (356)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCceeEEEEecCCCCEEEEEe--CCCcEEEEEC-CCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCC
Q 004214 239 NEEILDLKFLGEEEQYLAVAT--NIEQVQVYDL-SSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSE 315 (768)
Q Consensus 239 ~~~i~~~~~~~~~~~~l~~~~--~~~~i~i~d~-~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~ 315 (768)
.++. .++.|++|++ .+++.+..+.+|...+..+++.+.+.++.+|++|+.|++|++||+.
T Consensus 149 -----------------~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~ 211 (356)
T 2w18_A 149 -----------------SSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLK 211 (356)
T ss_dssp -----------------EEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETT
T ss_pred -----------------EecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECC
Confidence 1111 2455666665 3355556667777777777744434455569999999999999999
Q ss_pred CceEEEeeeccc---CcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCC
Q 004214 316 SRCCVGVGTGHM---GAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND 392 (768)
Q Consensus 316 ~~~~~~~~~~~~---~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 392 (768)
+++++..+.+|. ..+.+++|+|++. ++++++.+.. +|
T Consensus 212 TGk~l~tL~g~~~~v~~v~~vafSpdG~-~lvs~s~~~~--~w------------------------------------- 251 (356)
T 2w18_A 212 TGQLLKKMHIDDSYQASVCHKAYSEMGL-LFIVLSHPCA--KE------------------------------------- 251 (356)
T ss_dssp TCCEEEEEECCC---CCCEEEEEEETTE-EEEEEC---------------------------------------------
T ss_pred CCcEEEEEcCCCcceeeeEEEEECCCCC-EEEEeccCCC--cc-------------------------------------
Confidence 999999998654 3577788999865 5666554321 12
Q ss_pred CEEEEEeCCCcEEEEeCCCCceEEEE-----eccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcE
Q 004214 393 SLVCTGSQDRTACVWRLPDLVSVVTF-----RGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSV 467 (768)
Q Consensus 393 ~~l~~~~~dg~i~i~d~~~~~~~~~~-----~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v 467 (768)
.+++|+.|++|++||..+++.+..+ .+|...+.+..++ +.++++++.|++|+|||+.+++++.++.+|...+
T Consensus 252 -~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~v 328 (356)
T 2w18_A 252 -SESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQH 328 (356)
T ss_dssp -------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECCC--CC
T ss_pred -eeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCe
Confidence 4678889999999999999887765 3666665555444 8899999999999999999999999999998766
Q ss_pred E-EEEEEeCCCEEEEEeCCCcEEEEEC
Q 004214 468 L-RASFLTRGAQIVSCGADGLVKLWTV 493 (768)
Q Consensus 468 ~-~~~~s~~~~~l~s~~~dg~i~iwd~ 493 (768)
. .++|+|||++|++|+.|++|+|||+
T Consensus 329 vs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 329 WSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp CCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCcEEEecC
Confidence 5 5899999999999999999999985
No 119
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.98 E-value=7.1e-29 Score=266.39 Aligned_cols=330 Identities=9% Similarity=0.081 Sum_probs=258.0
Q ss_pred CCCcEEEEE---EeeCCCccEEEE------------EeCCC--cEEEEECCCC--eeEEEecCccceeEEEEEcCCCCEE
Q 004214 29 HKGVVSSIL---FHPDTDKSLLFS------------GSDDA--TVRVWDLLAK--KCVATLDKHFSRVTSMAITSDGSTL 89 (768)
Q Consensus 29 h~~~V~~l~---~spd~~~~~l~s------------g~~dg--~I~iWd~~~~--~~~~~l~~h~~~V~~l~fs~d~~~L 89 (768)
+...+..++ |+|++...++++ ++.++ .|.+||..++ +.+..+..+. .+.+++|+|++.++
T Consensus 59 ~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~ 137 (433)
T 3bws_A 59 KNIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRFKTGF-QPKSVRFIDNTRLA 137 (433)
T ss_dssp TTEEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEEECSS-CBCCCEESSSSEEE
T ss_pred cCCccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEEcCCC-CceEEEEeCCCeEE
Confidence 456778888 888766533333 23334 4444444435 6666676554 46699999977778
Q ss_pred EEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCC
Q 004214 90 ISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADS 169 (768)
Q Consensus 90 ~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~ 169 (768)
++++.++.|++||+.+++....++.
T Consensus 138 ~~~~~~~~i~~~d~~~g~~~~~~~~------------------------------------------------------- 162 (433)
T 3bws_A 138 IPLLEDEGMDVLDINSGQTVRLSPP------------------------------------------------------- 162 (433)
T ss_dssp EEBTTSSSEEEEETTTCCEEEECCC-------------------------------------------------------
T ss_pred EEeCCCCeEEEEECCCCeEeeecCc-------------------------------------------------------
Confidence 8888889999999988764432210
Q ss_pred ceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEec
Q 004214 170 ACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLG 249 (768)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 249 (768)
....+|...+.+++| +
T Consensus 163 ---------------------------------------------------------------~~~~~~~~~v~~~~~-~ 178 (433)
T 3bws_A 163 ---------------------------------------------------------------EKYKKKLGFVETISI-P 178 (433)
T ss_dssp ---------------------------------------------------------------HHHHTTCCEEEEEEE-G
T ss_pred ---------------------------------------------------------------ccccccCCceeEEEE-c
Confidence 012245556778888 4
Q ss_pred CCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCc
Q 004214 250 EEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGA 329 (768)
Q Consensus 250 ~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 329 (768)
+++.++++++.++.|++||+.+++....+..|...+.+++ +.+++..++++++.++.|++||+.+++.+..+..+ ..
T Consensus 179 ~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~ 255 (433)
T 3bws_A 179 EHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILL--YDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GL 255 (433)
T ss_dssp GGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEE--EETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SE
T ss_pred CCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEE--EcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CC
Confidence 5778899999999999999999999999999999999998 78888886677778999999999999988877754 45
Q ss_pred EEEEEEecCCCcEEEEEe--------CCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCE-EEEEeC
Q 004214 330 VGAVAFSKKLQNFLVSGS--------SDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSL-VCTGSQ 400 (768)
Q Consensus 330 v~~~~~~~~~~~~l~s~~--------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~-l~~~~~ 400 (768)
+.+++|+|+++ ++++++ .||.|++||+..+. . .....|...+.+++|+|+++. +++++.
T Consensus 256 ~~~~~~~~~g~-~l~~~~~~~~~~~~~dg~i~~~d~~~~~----------~-~~~~~~~~~~~~~~~~~~g~~l~~~~~~ 323 (433)
T 3bws_A 256 PRGLLLSKDGK-ELYIAQFSASNQESGGGRLGIYSMDKEK----------L-IDTIGPPGNKRHIVSGNTENKIYVSDMC 323 (433)
T ss_dssp EEEEEECTTSS-EEEEEEEESCTTCSCCEEEEEEETTTTE----------E-EEEEEEEECEEEEEECSSTTEEEEEETT
T ss_pred ceEEEEcCCCC-EEEEEECCCCccccCCCeEEEEECCCCc----------E-EeeccCCCCcceEEECCCCCEEEEEecC
Confidence 89999999977 566666 58899999997431 1 122345568899999999975 466689
Q ss_pred CCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeC---------------CCcEEEEeCCCCceeEEeecCCC
Q 004214 401 DRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASG---------------DKTIKIWSISDGSCLKTFEGHTS 465 (768)
Q Consensus 401 dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~---------------d~~i~iwd~~~~~~~~~~~~~~~ 465 (768)
|+.|++||+.+++....+. +...+.+++|+|+++++++++. ||.|++||+.+++.+..+.. ..
T Consensus 324 ~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~ 401 (433)
T 3bws_A 324 CSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GN 401 (433)
T ss_dssp TTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SS
T ss_pred CCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC-CC
Confidence 9999999999998888776 7788999999999999888876 57999999999999998886 45
Q ss_pred cEEEEEEEeCCCEEEEEeC-CCcEEEEECCC
Q 004214 466 SVLRASFLTRGAQIVSCGA-DGLVKLWTVRT 495 (768)
Q Consensus 466 ~v~~~~~s~~~~~l~s~~~-dg~i~iwd~~~ 495 (768)
.+.+++|+|+|++|++++. |+.|++|++..
T Consensus 402 ~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 402 QPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp SEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred CCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 7899999999999998875 99999999863
No 120
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=6e-31 Score=301.04 Aligned_cols=251 Identities=24% Similarity=0.380 Sum_probs=217.3
Q ss_pred eeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCC--CceEEEeeecccCcEEEEEEecCC-CcEEEEEeCCCeE
Q 004214 276 YVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSE--SRCCVGVGTGHMGAVGAVAFSKKL-QNFLVSGSSDHTI 352 (768)
Q Consensus 276 ~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~s~~~dg~i 352 (768)
..+.+|.+.|.+++ +.+++.. +++|+.||.|++||+. ++.....+.+|.++|.+++|+|+. ..++++|+.||.|
T Consensus 3 ~~l~gH~~~V~~l~--~s~dg~~-latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I 79 (753)
T 3jro_A 3 VIANAHNELIHDAV--LDYYGKR-LATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV 79 (753)
T ss_dssp -----CCCCEEEEC--CCSSSCC-EEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCE
T ss_pred eecccCcceeEEEE--ECCCCCe-EEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeE
Confidence 46789999999998 7777765 9999999999999998 567788889999999999999872 3489999999999
Q ss_pred EEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccC--CCEEEEEeCCCcEEEEeCCCC--ceEEEEeccCCCeEEE
Q 004214 353 KVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN--DSLVCTGSQDRTACVWRLPDL--VSVVTFRGHKRGIWSV 428 (768)
Q Consensus 353 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~v~~v 428 (768)
++||+..+ ..........|...|++++|+|+ ++++++|+.||.|++||+.++ .....+.+|...|.++
T Consensus 80 ~vwd~~~~--------~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l 151 (753)
T 3jro_A 80 LIWKEENG--------RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSA 151 (753)
T ss_dssp EEEEEETT--------EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEE
T ss_pred EEEECCCC--------cccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEE
Confidence 99998753 22355666789999999999999 999999999999999999877 3455678899999999
Q ss_pred EEcc-------------CCCEEEEeeCCCcEEEEeCCCC----ceeEEeecCCCcEEEEEEEeC---CCEEEEEeCCCcE
Q 004214 429 EFSP-------------VDQVVITASGDKTIKIWSISDG----SCLKTFEGHTSSVLRASFLTR---GAQIVSCGADGLV 488 (768)
Q Consensus 429 ~~s~-------------~~~~l~t~~~d~~i~iwd~~~~----~~~~~~~~~~~~v~~~~~s~~---~~~l~s~~~dg~i 488 (768)
+|+| ++.++++|+.||.|++||++++ .+...+.+|...|++++|+|+ +++|++|+.||.|
T Consensus 152 ~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I 231 (753)
T 3jro_A 152 SWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTC 231 (753)
T ss_dssp EECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCE
T ss_pred EecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEE
Confidence 9999 5899999999999999999887 566788899999999999999 8999999999999
Q ss_pred EEEECCCCe-----EEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 004214 489 KLWTVRTGE-----CIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDST 537 (768)
Q Consensus 489 ~iwd~~~~~-----~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~ 537 (768)
++||+.+++ .+.....|...|++++|+|+|++|++|+.||.|++|++.+
T Consensus 232 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 232 IIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp EEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred EEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence 999999874 3344456889999999999999999999999999999874
No 121
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.6e-30 Score=269.37 Aligned_cols=210 Identities=10% Similarity=0.087 Sum_probs=159.0
Q ss_pred EEECCCceeeeee-eCCccceEEEeeeeec--CCCEEEEEEeCCCeEEEEeCCCceEEEeee-cccCcEEEEEEecCCCc
Q 004214 266 VYDLSSMSCSYVL-AGHSEIVLCLDTCALS--SGKILIVTGSKDNSVRLWDSESRCCVGVGT-GHMGAVGAVAFSKKLQN 341 (768)
Q Consensus 266 i~d~~~~~~~~~~-~~~~~~v~~l~~~~~~--~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~ 341 (768)
+|+..+++.+..+ .+|...|.++. +.+ ++.. +++|+.||.|++||+.+++...... .|...+.+++|+|++.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~-l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~- 183 (343)
T 3lrv_A 108 ILDSKTNKVLREIEVDSANEIIYMY--GHNEVNTEY-FIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSL- 183 (343)
T ss_dssp EEETTTCCEEEEEECCCSSCEEEEE--CCC---CCE-EEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSC-
T ss_pred EeecCCcceeEEeecCCCCCEEEEE--cCCCCCCCE-EEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCC-
Confidence 3444444433333 25667788886 556 5555 9999999999999999998877664 4556899999999976
Q ss_pred EEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeec-cCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEec
Q 004214 342 FLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAA-HGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG 420 (768)
Q Consensus 342 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 420 (768)
++++|+.||.|++||++.... ....+.. |...|++++|+|++.+|++++ |+.|++||+++++.+..+..
T Consensus 184 ~lasg~~dg~i~iwd~~~~~~---------~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~ 253 (343)
T 3lrv_A 184 LLALYSPDGILDVYNLSSPDQ---------ASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPT 253 (343)
T ss_dssp EEEEECTTSCEEEEESSCTTS---------CCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCC
T ss_pred EEEEEcCCCEEEEEECCCCCC---------CccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecc
Confidence 899999999999999986431 1133444 899999999999999999999 55999999998876654443
Q ss_pred ---cCCCeE--EEEEccCCCEEEEeeC-CCcEEEEeCCCCceeEEeecCCCcEEEEEEEe---CCCEEEEEeCCCcEEEE
Q 004214 421 ---HKRGIW--SVEFSPVDQVVITASG-DKTIKIWSISDGSCLKTFEGHTSSVLRASFLT---RGAQIVSCGADGLVKLW 491 (768)
Q Consensus 421 ---~~~~v~--~v~~s~~~~~l~t~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~s~~~dg~i~iw 491 (768)
|...+. +++|+|++++|++++. |+.|++|++......... .++..+.|.+ +++.+++++.||.+.++
T Consensus 254 ~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~ 329 (343)
T 3lrv_A 254 YTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAI 329 (343)
T ss_dssp CBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEE
T ss_pred cccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEE
Confidence 444444 6999999999999988 999999999766544333 5677888988 88999999999999887
Q ss_pred EC
Q 004214 492 TV 493 (768)
Q Consensus 492 d~ 493 (768)
-.
T Consensus 330 ~~ 331 (343)
T 3lrv_A 330 LK 331 (343)
T ss_dssp EE
T ss_pred Ee
Confidence 53
No 122
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.5e-29 Score=272.63 Aligned_cols=197 Identities=16% Similarity=0.113 Sum_probs=158.8
Q ss_pred CccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEE----eeecccCcEEEEEEecC---CCcEEEEEeCCCeEE
Q 004214 281 HSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVG----VGTGHMGAVGAVAFSKK---LQNFLVSGSSDHTIK 353 (768)
Q Consensus 281 ~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~----~~~~~~~~v~~~~~~~~---~~~~l~s~~~dg~i~ 353 (768)
|...|.+++ +.+++.. |++|+.+|.|++|++.++.... .+.+|...|.+++|+|+ +. +|++++.|+.|+
T Consensus 148 ~~~~v~~~~--~sp~~~~-l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~-~l~s~~~d~~i~ 223 (450)
T 2vdu_B 148 FSKRPNAIS--IAEDDTT-VIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQ-FIITSDRDEHIK 223 (450)
T ss_dssp CSSCEEEEE--ECTTSSE-EEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCE-EEEEEETTSCEE
T ss_pred CCCCceEEE--EcCCCCE-EEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCc-EEEEEcCCCcEE
Confidence 445666765 6666655 8888889999999887766443 67789999999999998 54 899999999999
Q ss_pred EEeCCCCCCCCccccccceee-EeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEecc-----------
Q 004214 354 VWSFDGLSDDAEQPMNLKAKA-VVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGH----------- 421 (768)
Q Consensus 354 iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----------- 421 (768)
+||+.... ... ...+|...|.+++|+ ++++|++++.|+.|++||+.+++.+..+..+
T Consensus 224 vwd~~~~~----------~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 292 (450)
T 2vdu_B 224 ISHYPQCF----------IVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQH 292 (450)
T ss_dssp EEEESCTT----------CEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTS
T ss_pred EEECCCCc----------eeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcc
Confidence 99987432 222 245799999999999 9999999999999999999999988888632
Q ss_pred --------------CCCeEEEEEccCCCEEEEee-CCCcEEEEeC--CCC---ceeEEeecCCCcEEEEEEEeCCCEEEE
Q 004214 422 --------------KRGIWSVEFSPVDQVVITAS-GDKTIKIWSI--SDG---SCLKTFEGHTSSVLRASFLTRGAQIVS 481 (768)
Q Consensus 422 --------------~~~v~~v~~s~~~~~l~t~~-~d~~i~iwd~--~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~s 481 (768)
...|.+++|+|++++|++++ .|+.|++|++ .++ .++..+.+| ..|.+++|+|++.++++
T Consensus 293 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~ 371 (450)
T 2vdu_B 293 LAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTL 371 (450)
T ss_dssp BC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEE
T ss_pred cccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEE
Confidence 35789999999999999999 8999999999 666 677888888 89999999996533443
Q ss_pred EeC------CCcEEEEEC
Q 004214 482 CGA------DGLVKLWTV 493 (768)
Q Consensus 482 ~~~------dg~i~iwd~ 493 (768)
++. +..|.+|.+
T Consensus 372 ~~~~~~~~~~~~i~v~~~ 389 (450)
T 2vdu_B 372 DNKESSGVQKNFAKFIEY 389 (450)
T ss_dssp CCTTCCSSCCCSEEEEEE
T ss_pred ecccCCCCCCcceEEEEE
Confidence 333 344666654
No 123
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.97 E-value=8.6e-30 Score=272.42 Aligned_cols=255 Identities=22% Similarity=0.412 Sum_probs=221.7
Q ss_pred eeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCC----------ceeeeeeeCCccceEEEeeeeecCCCEEEEE
Q 004214 233 KRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSS----------MSCSYVLAGHSEIVLCLDTCALSSGKILIVT 302 (768)
Q Consensus 233 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~----------~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~ 302 (768)
....+|.+.|.+++|++.++.++++++.+|.|++|++.+ ......+.+|...+.+++ +.+.+..+|++
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~--~~~~~~~~l~s 199 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLS--WNPNLNGYLLS 199 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEE--ECTTSTTEEEE
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEE--eCCCCCCeEEE
Confidence 345678899999999987788999999999999999986 567778899999999998 77777745999
Q ss_pred EeCCCeEEEEeCCCceE-------EEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeE
Q 004214 303 GSKDNSVRLWDSESRCC-------VGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAV 375 (768)
Q Consensus 303 ~~~dg~i~iwd~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 375 (768)
|+.||.|++|++.++.. ...+.+|...|.+++|+|++..++++++.||.|++||++... .......
T Consensus 200 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~-------~~~~~~~ 272 (430)
T 2xyi_A 200 ASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNN-------TSKPSHT 272 (430)
T ss_dssp ECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSC-------SSSCSEE
T ss_pred EeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCC-------CCcceeE
Confidence 99999999999987321 345678999999999999767799999999999999998542 1234445
Q ss_pred eeccCCCeEEEEEccCCC-EEEEEeCCCcEEEEeCCC-CceEEEEeccCCCeEEEEEccCCC-EEEEeeCCCcEEEEeCC
Q 004214 376 VAAHGKDINSLAVAPNDS-LVCTGSQDRTACVWRLPD-LVSVVTFRGHKRGIWSVEFSPVDQ-VVITASGDKTIKIWSIS 452 (768)
Q Consensus 376 ~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~v~~v~~s~~~~-~l~t~~~d~~i~iwd~~ 452 (768)
...|...|++++|+|++. ++++|+.||.|++||+++ ..++..+.+|...|++++|+|+++ +|++++.|+.|+|||+.
T Consensus 273 ~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~ 352 (430)
T 2xyi_A 273 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 352 (430)
T ss_dssp EECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGG
T ss_pred eecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCC
Confidence 568999999999999887 689999999999999998 567888999999999999999984 79999999999999997
Q ss_pred C--------------CceeEEeecCCCcEEEEEEEeCCC-EEEEEeCCCcEEEEECCCC
Q 004214 453 D--------------GSCLKTFEGHTSSVLRASFLTRGA-QIVSCGADGLVKLWTVRTG 496 (768)
Q Consensus 453 ~--------------~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~ 496 (768)
. ..++..+.+|...|++++|+|++. +|++++.||.|+||++..+
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 353 KIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp GTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred CCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 7 367788889999999999999999 8999999999999998753
No 124
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.7e-30 Score=267.58 Aligned_cols=261 Identities=11% Similarity=0.040 Sum_probs=208.6
Q ss_pred CCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCC---------CceEEE
Q 004214 251 EEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSE---------SRCCVG 321 (768)
Q Consensus 251 ~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~---------~~~~~~ 321 (768)
++.++++|+.||.|++||+.+++.+..+. ...|.++. +.+. +++++.|++|++|+.. +++.+.
T Consensus 47 d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~--~~~~----~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~ 118 (343)
T 3lrv_A 47 DKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGG--EHPA----IISRGPCNRLLLLYPGNQITILDSKTNKVLR 118 (343)
T ss_dssp EEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTC--CCCS----EEEECSTTEEEEEETTTEEEEEETTTCCEEE
T ss_pred CCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeee--eCCc----eEEecCCCeEEEEEccCceEEeecCCcceeE
Confidence 56789999999999999999998887776 34555554 3333 8999999999999765 444444
Q ss_pred eee-cccCcEEEEEEec--CCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEe-eccCCCeEEEEEccCCCEEEE
Q 004214 322 VGT-GHMGAVGAVAFSK--KLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVV-AAHGKDINSLAVAPNDSLVCT 397 (768)
Q Consensus 322 ~~~-~~~~~v~~~~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~ 397 (768)
.+. +|.++|.+++|+| ++. ++++++.||+|++||+..+. ..... ..+...+++++|+|++.+|++
T Consensus 119 ~~~~~~~~~v~~~~~~~~~~~~-~l~s~s~dg~i~~wd~~~~~----------~~~~~~~~~~~~i~~~~~~pdg~~las 187 (343)
T 3lrv_A 119 EIEVDSANEIIYMYGHNEVNTE-YFIWADNRGTIGFQSYEDDS----------QYIVHSAKSDVEYSSGVLHKDSLLLAL 187 (343)
T ss_dssp EEECCCSSCEEEEECCC---CC-EEEEEETTCCEEEEESSSSC----------EEEEECCCSSCCCCEEEECTTSCEEEE
T ss_pred EeecCCCCCEEEEEcCCCCCCC-EEEEEeCCCcEEEEECCCCc----------EEEEEecCCCCceEEEEECCCCCEEEE
Confidence 443 6778999999999 865 89999999999999998542 22222 345668999999999999999
Q ss_pred EeCCCcEEEEeCCCCceE-EEEec-cCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeec---CCCcEE--EE
Q 004214 398 GSQDRTACVWRLPDLVSV-VTFRG-HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEG---HTSSVL--RA 470 (768)
Q Consensus 398 ~~~dg~i~i~d~~~~~~~-~~~~~-~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~---~~~~v~--~~ 470 (768)
|+.||.|++||+++++.+ ..+.+ |..+|++++|+|++.+|++++ |+.|++||+++++++..+.. |...+. ++
T Consensus 188 g~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (343)
T 3lrv_A 188 YSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTY 266 (343)
T ss_dssp ECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEE
T ss_pred EcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEE
Confidence 999999999999999887 78888 999999999999999999999 45999999999887766553 434443 69
Q ss_pred EEEeCCCEEEEEeC-CCcEEEEECCCCeEEEEeccCCCcEEEEEEcC---CCCEEEEEeCCCcEEEEEc
Q 004214 471 SFLTRGAQIVSCGA-DGLVKLWTVRTGECIATYDKHEDKIWALAVGK---KTEMFATGGSDALVNLWHD 535 (768)
Q Consensus 471 ~~s~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~---~~~~l~s~~~dg~v~vw~~ 535 (768)
+|+|+|++|++++. |+.|++|++.+....... .++..++|+| +...+++++.||.+.++-.
T Consensus 267 ~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~ 331 (343)
T 3lrv_A 267 DIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAILK 331 (343)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEEEE
T ss_pred EECCCCCEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEEEe
Confidence 99999999999998 999999999765433222 5677888888 8889999999999988754
No 125
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=1.8e-28 Score=259.40 Aligned_cols=268 Identities=15% Similarity=0.127 Sum_probs=228.1
Q ss_pred CEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEE
Q 004214 253 QYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGA 332 (768)
Q Consensus 253 ~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 332 (768)
.++++++.++.|++||+.+++....+..|.. +.+++ +.+++..++++++.|+.|++||+.+++.+..+..+. .+.+
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~-~~~~~--~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~ 78 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGSN-PMGAV--ISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQG 78 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSSS-EEEEE--ECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCCC-cceEE--ECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-Cccc
Confidence 3677888899999999999999988887765 67877 778888766888899999999999999988887665 8999
Q ss_pred EEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEE-EEEeCCCcEEEEeCCC
Q 004214 333 VAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLV-CTGSQDRTACVWRLPD 411 (768)
Q Consensus 333 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l-~~~~~dg~i~i~d~~~ 411 (768)
++|+|+++.++++++.++.|++||+..+ ...... .+...+.+++|+|+++.+ ++++.++.|++||+.+
T Consensus 79 ~~~spdg~~l~~~~~~~~~v~v~d~~~~----------~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~ 147 (391)
T 1l0q_A 79 VAVSPDGKQVYVTNMASSTLSVIDTTSN----------TVAGTV-KTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVT 147 (391)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEETTTT----------EEEEEE-ECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred eEECCCCCEEEEEECCCCEEEEEECCCC----------eEEEEE-eCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCC
Confidence 9999998865567778899999999753 122222 345678999999999977 6778899999999999
Q ss_pred CceEEEEeccCCCeEEEEEccCCCEE-EEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEe---CCCc
Q 004214 412 LVSVVTFRGHKRGIWSVEFSPVDQVV-ITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCG---ADGL 487 (768)
Q Consensus 412 ~~~~~~~~~~~~~v~~v~~s~~~~~l-~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~---~dg~ 487 (768)
++.+..+..+ ..+.+++|+|+++.+ ++++.++.|++||+.+++++..+. +...+.+++|+|+|++|++++ .++.
T Consensus 148 ~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~ 225 (391)
T 1l0q_A 148 KAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNT 225 (391)
T ss_dssp TEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCE
T ss_pred CcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCc
Confidence 9988888765 456999999999877 577888999999999999888877 566889999999999999888 6899
Q ss_pred EEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEE-EEEeCCCcEEEEEcCCH
Q 004214 488 VKLWTVRTGECIATYDKHEDKIWALAVGKKTEMF-ATGGSDALVNLWHDSTA 538 (768)
Q Consensus 488 i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l-~s~~~dg~v~vw~~~~~ 538 (768)
|++||+.+++++..+..|. .+.+++|+|++++| ++++.|+.|++|+..++
T Consensus 226 v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~ 276 (391)
T 1l0q_A 226 VSMIDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATN 276 (391)
T ss_dssp EEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred EEEEECCCCeEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCC
Confidence 9999999999999988655 57899999999987 67788999999998764
No 126
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.97 E-value=1.6e-28 Score=268.12 Aligned_cols=331 Identities=14% Similarity=0.139 Sum_probs=249.0
Q ss_pred EEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEEEC--CCCeeeeeeec
Q 004214 37 LFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDL--RDYSCKLTVPT 114 (768)
Q Consensus 37 ~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~--~~~~~~~~~~~ 114 (768)
+|+|++.. +++++.|++|.+||..+++++.++..+.. +.+++|+|||++|++++.|+.|.+||+ .+++++.+++.
T Consensus 144 ~~~p~~~~--~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~ 220 (543)
T 1nir_A 144 DLDLPNLF--SVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI 220 (543)
T ss_dssp CCCGGGEE--EEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC
T ss_pred ccCCCCEE--EEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec
Confidence 48887654 89999999999999999999999984433 889999999999999999999999999 78777666655
Q ss_pred ceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCccccee
Q 004214 115 YEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFT 194 (768)
Q Consensus 115 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (768)
...+..++|+|..
T Consensus 221 g~~p~~va~sp~~------------------------------------------------------------------- 233 (543)
T 1nir_A 221 GIEARSVESSKFK------------------------------------------------------------------- 233 (543)
T ss_dssp CSEEEEEEECCST-------------------------------------------------------------------
T ss_pred CCCcceEEeCCCc-------------------------------------------------------------------
Confidence 4444444444400
Q ss_pred EEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEe-CCCcEEEEECCCce
Q 004214 195 AATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVAT-NIEQVQVYDLSSMS 273 (768)
Q Consensus 195 ~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~~~~i~i~d~~~~~ 273 (768)
..++++++++. .++.|.+||..+++
T Consensus 234 ------------------------------------------------------~~dg~~l~v~~~~~~~v~v~D~~t~~ 259 (543)
T 1nir_A 234 ------------------------------------------------------GYEDRYTIAGAYWPPQFAIMDGETLE 259 (543)
T ss_dssp ------------------------------------------------------TCTTTEEEEEEEESSEEEEEETTTCC
T ss_pred ------------------------------------------------------CCCCCEEEEEEccCCeEEEEeccccc
Confidence 00233333333 24556666665555
Q ss_pred eeeeeeCC-----------ccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEE--eeecccCcEEEEEEecCCC
Q 004214 274 CSYVLAGH-----------SEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVG--VGTGHMGAVGAVAFSKKLQ 340 (768)
Q Consensus 274 ~~~~~~~~-----------~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~ 340 (768)
++..+..+ ...+.++. +++++..++++...++.|.+||+.+.+.+. .+ .+...+..++|+|+++
T Consensus 260 ~~~~i~~~g~~~~~~~~~~~~~v~~i~--~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spdg~ 336 (543)
T 1nir_A 260 PKQIVSTRGMTVDTQTYHPEPRVAAII--ASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSSHR 336 (543)
T ss_dssp EEEEEECCEECSSSCCEESCCCEEEEE--ECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEE-ECCSSCCCEEECTTSC
T ss_pred cceeecccCcccCccccccCCceEEEE--ECCCCCEEEEEECCCCeEEEEEecCCCcceeEEe-ccCcCccCceECCCCC
Confidence 55554431 22466665 777788888899999999999998765433 33 3556678899999988
Q ss_pred cEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEee----ccCCCeEEEEEccC-CCEEEEEe-CCCcEEEEeCCC---
Q 004214 341 NFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVA----AHGKDINSLAVAPN-DSLVCTGS-QDRTACVWRLPD--- 411 (768)
Q Consensus 341 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~~~s~~-~~~l~~~~-~dg~i~i~d~~~--- 411 (768)
.+++++..+++|.+||...+. ...... .|......+ ++|+ +..++++. .|++|.+||+.+
T Consensus 337 ~l~va~~~~~~v~v~D~~tg~----------l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~ 405 (543)
T 1nir_A 337 YFMTAANNSNKVAVIDSKDRR----------LSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNH 405 (543)
T ss_dssp EEEEEEGGGTEEEEEETTTTE----------EEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTC
T ss_pred EEEEEecCCCeEEEEECCCCe----------EEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCC
Confidence 656666779999999998542 222222 254433333 4676 66667765 589999999998
Q ss_pred ----CceEEEEeccCCCeEEEEEccCCCEEEEee-------CCCcEEEEeCCCCcee-EEe--------ecCCCcEEEEE
Q 004214 412 ----LVSVVTFRGHKRGIWSVEFSPVDQVVITAS-------GDKTIKIWSISDGSCL-KTF--------EGHTSSVLRAS 471 (768)
Q Consensus 412 ----~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~-------~d~~i~iwd~~~~~~~-~~~--------~~~~~~v~~~~ 471 (768)
++.+.++.+|...+..++|+|++++|++++ .+++|.+||+.+++.. ..+ ..+...+..+.
T Consensus 406 ~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 485 (543)
T 1nir_A 406 PQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPE 485 (543)
T ss_dssp TTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEE
T ss_pred chhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEecc
Confidence 899999999999999999999999999987 2679999999999887 444 35678899999
Q ss_pred EEeCCCEEEEEe-----CCCcEEEEECCCCeEEEEeccC
Q 004214 472 FLTRGAQIVSCG-----ADGLVKLWTVRTGECIATYDKH 505 (768)
Q Consensus 472 ~s~~~~~l~s~~-----~dg~i~iwd~~~~~~~~~~~~~ 505 (768)
|+|+|++++++. .|+.|.|||.++++++.++..+
T Consensus 486 ~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~~ 524 (543)
T 1nir_A 486 YNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDP 524 (543)
T ss_dssp ECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred CCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeecCC
Confidence 999999988663 4799999999999999999753
No 127
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=1.5e-30 Score=274.37 Aligned_cols=268 Identities=12% Similarity=0.056 Sum_probs=189.0
Q ss_pred eEEEEecCCCCEEEEEeCCCcEEEEECCCceee-----eeeeCCccceEEEeeeee-----cCCCEEEEEEeCCCeEEEE
Q 004214 243 LDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCS-----YVLAGHSEIVLCLDTCAL-----SSGKILIVTGSKDNSVRLW 312 (768)
Q Consensus 243 ~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~-----~~~~~~~~~v~~l~~~~~-----~~~~~~l~~~~~dg~i~iw 312 (768)
..+.+.+++..++++++.|+.|++||..++... ..+.+|.+.|.+++++.. +.++.+|++|+.|++|++|
T Consensus 92 ~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~W 171 (393)
T 4gq1_A 92 GNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIW 171 (393)
T ss_dssp -----CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEE
T ss_pred cceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEE
Confidence 445556677889999999999999999887654 346899999999984331 1245569999999999999
Q ss_pred eCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccc---------------cccceeeEee
Q 004214 313 DSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQP---------------MNLKAKAVVA 377 (768)
Q Consensus 313 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---------------~~~~~~~~~~ 377 (768)
|+.++.++..+..|..++.+++|+|++..+|++++.||+|++||+.......... ..........
T Consensus 172 d~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 251 (393)
T 4gq1_A 172 RLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSS 251 (393)
T ss_dssp EEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------
T ss_pred ECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecc
Confidence 9999888888889999999999999987789999999999999998654322110 0011122235
Q ss_pred ccCCCeEEEEEc-cCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCce
Q 004214 378 AHGKDINSLAVA-PNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSC 456 (768)
Q Consensus 378 ~~~~~i~~~~~s-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~ 456 (768)
+|...+.++.|+ |+++.+++++.|+++++||+..+.....+..|...+..+.+.|+.+.+....
T Consensus 252 ~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--------------- 316 (393)
T 4gq1_A 252 GIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFP--------------- 316 (393)
T ss_dssp CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSC---------------
T ss_pred cccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccC---------------
Confidence 678889999987 7999999999999999999999888888888888888888887654332211
Q ss_pred eEEeecCCCcEEEEEEEe--CCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004214 457 LKTFEGHTSSVLRASFLT--RGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 534 (768)
Q Consensus 457 ~~~~~~~~~~v~~~~~s~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~ 534 (768)
..+. ..|+| ++.++++|+.||.|++||+.+++++..+..|..+|.+++|+|||++||+++.+| +.+|+
T Consensus 317 --------~~~~-~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvr 386 (393)
T 4gq1_A 317 --------SLLG-ACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTR 386 (393)
T ss_dssp --------CSSC-CEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEE
T ss_pred --------ccee-EEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEE
Confidence 1111 23333 445677888999999999999999888888999999999999999999999877 55555
Q ss_pred c
Q 004214 535 D 535 (768)
Q Consensus 535 ~ 535 (768)
+
T Consensus 387 L 387 (393)
T 4gq1_A 387 L 387 (393)
T ss_dssp E
T ss_pred E
Confidence 4
No 128
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.97 E-value=6.4e-28 Score=263.29 Aligned_cols=338 Identities=13% Similarity=0.090 Sum_probs=260.9
Q ss_pred EEEeecCCCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEEC--CCCeeEEEecCccceeEE
Q 004214 2 FALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDL--LAKKCVATLDKHFSRVTS 79 (768)
Q Consensus 2 ~latg~~dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~--~~~~~~~~l~~h~~~V~~ 79 (768)
++++++.|++|.+||..+++++..+..+.. +.+++|+|||++ |++++.|++|.+||+ .+++++.++.. ...+..
T Consensus 151 ~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~--l~v~~~d~~V~v~D~~~~t~~~~~~i~~-g~~p~~ 226 (543)
T 1nir_A 151 FSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRY--LLVIGRDARIDMIDLWAKEPTKVAEIKI-GIEARS 226 (543)
T ss_dssp EEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCE--EEEEETTSEEEEEETTSSSCEEEEEEEC-CSEEEE
T ss_pred EEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCE--EEEECCCCeEEEEECcCCCCcEEEEEec-CCCcce
Confidence 578899999999999999999999984333 899999999998 999999999999999 89999999884 456899
Q ss_pred EEEcC----CCCEEEEEeC-CCeEEEEECCCCeeeeeeeccee-EeeEEecCCCCCccccccccchhhhhcccCCcceEE
Q 004214 80 MAITS----DGSTLISAGR-DKVVNLWDLRDYSCKLTVPTYEM-VEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHF 153 (768)
Q Consensus 80 l~fs~----d~~~L~s~~~-dg~i~vWd~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (768)
++|+| ||++|++++. +++|.+||..+++++.+++.... +....+
T Consensus 227 va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~------------------------------ 276 (543)
T 1nir_A 227 VESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTY------------------------------ 276 (543)
T ss_dssp EEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCE------------------------------
T ss_pred EEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCcccc------------------------------
Confidence 99999 9999999884 89999999999887766643210 000000
Q ss_pred EEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEe
Q 004214 154 ITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSK 233 (768)
Q Consensus 154 ~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~ 233 (768)
T Consensus 277 -------------------------------------------------------------------------------- 276 (543)
T 1nir_A 277 -------------------------------------------------------------------------------- 276 (543)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeee--eeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEE
Q 004214 234 RLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSY--VLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRL 311 (768)
Q Consensus 234 ~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~--~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~i 311 (768)
.....+..+.+++.+..++++...++.|.+||..+..... .+. +...+..+. +.++++.+++++..+++|.+
T Consensus 277 ---~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~--~spdg~~l~va~~~~~~v~v 350 (543)
T 1nir_A 277 ---HPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-AAPFLHDGG--WDSSHRYFMTAANNSNKVAV 350 (543)
T ss_dssp ---ESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE-CCSSCCCEE--ECTTSCEEEEEEGGGTEEEE
T ss_pred ---ccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec-cCcCccCce--ECCCCCEEEEEecCCCeEEE
Confidence 0011455666666666677777778899999988765443 332 444555565 77888876667777999999
Q ss_pred EeCCCceEEEeeec----ccCcEEEEEEecCCCcEEEEEe-CCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEE
Q 004214 312 WDSESRCCVGVGTG----HMGAVGAVAFSKKLQNFLVSGS-SDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSL 386 (768)
Q Consensus 312 wd~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 386 (768)
||..+++++..+.. |.+....+ ++|++..+++++. .|++|.+||+...... ....+....+..|...+..+
T Consensus 351 ~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~---~~~~~~v~~l~~~g~~~~~v 426 (543)
T 1nir_A 351 IDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHP---QYAWKKVAELQGQGGGSLFI 426 (543)
T ss_dssp EETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCT---TTBTSEEEEEECSCSCCCCE
T ss_pred EECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCc---hhcCeEEEEEEcCCCCceEE
Confidence 99999999887764 55444333 5787565777776 6899999999852111 11256777888888888999
Q ss_pred EEccCCCEEEEEe-------CCCcEEEEeCCCCceE-EEE--------eccCCCeEEEEEccCCCEEEEee-----CCCc
Q 004214 387 AVAPNDSLVCTGS-------QDRTACVWRLPDLVSV-VTF--------RGHKRGIWSVEFSPVDQVVITAS-----GDKT 445 (768)
Q Consensus 387 ~~s~~~~~l~~~~-------~dg~i~i~d~~~~~~~-~~~--------~~~~~~v~~v~~s~~~~~l~t~~-----~d~~ 445 (768)
+++|++++|++++ .+++|.+||+.+++.. ..+ ..+...+..+.|+|+|+.++++. .|+.
T Consensus 427 ~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~ 506 (543)
T 1nir_A 427 KTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSA 506 (543)
T ss_dssp ECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCE
T ss_pred EcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCe
Confidence 9999999999987 2679999999998877 443 34577899999999999988763 4799
Q ss_pred EEEEeCCCCceeEEeecC
Q 004214 446 IKIWSISDGSCLKTFEGH 463 (768)
Q Consensus 446 i~iwd~~~~~~~~~~~~~ 463 (768)
|.|||..+++++++++.+
T Consensus 507 i~v~D~~t~~~~~~i~~~ 524 (543)
T 1nir_A 507 LVVVDDKTLKLKAVVKDP 524 (543)
T ss_dssp EEEEETTTTEEEEEECCT
T ss_pred EEEEECCCceEEEeecCC
Confidence 999999999999998854
No 129
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.5e-29 Score=287.61 Aligned_cols=249 Identities=24% Similarity=0.348 Sum_probs=215.5
Q ss_pred eecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECC--CceeeeeeeCCccceEEEeeeeecC--CCEEEEEEeCCCeE
Q 004214 234 RLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLS--SMSCSYVLAGHSEIVLCLDTCALSS--GKILIVTGSKDNSV 309 (768)
Q Consensus 234 ~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~--~~~~~~~~~~~~~~v~~l~~~~~~~--~~~~l~~~~~dg~i 309 (768)
.+.+|.+.|.+++|++ +++++++|+.+|.|++||+. ++.....+.+|...|.++. +.++ +. ++++|+.||.|
T Consensus 4 ~l~gH~~~V~~l~~s~-dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~--~s~~~~~~-~l~s~s~Dg~I 79 (753)
T 3jro_A 4 IANAHNELIHDAVLDY-YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVD--WAHPKFGT-ILASCSYDGKV 79 (753)
T ss_dssp ----CCCCEEEECCCS-SSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEE--ECCTTSCS-EEEEEETTSCE
T ss_pred ecccCcceeEEEEECC-CCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEE--ecCCCCCC-EEEEEeCCCeE
Confidence 4578999999999985 67799999999999999998 5677788999999999998 6555 55 49999999999
Q ss_pred EEEeCCCce--EEEeeecccCcEEEEEEecC--CCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEE
Q 004214 310 RLWDSESRC--CVGVGTGHMGAVGAVAFSKK--LQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINS 385 (768)
Q Consensus 310 ~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 385 (768)
++||+.++. ....+.+|...|.+++|+|+ +. ++++|+.||.|++||+.... .........|...|.+
T Consensus 80 ~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~-~l~sgs~dg~I~vwdl~~~~--------~~~~~~~~~~~~~v~~ 150 (753)
T 3jro_A 80 LIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGP-LLLVASSDGKVSVVEFKENG--------TTSPIIIDAHAIGVNS 150 (753)
T ss_dssp EEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEECCSSS--------CCCCEEEECCSSCEEE
T ss_pred EEEECCCCcccccccccCCCCCeEEEEECCCCCCC-EEEEEeCCCcEEEEEeecCC--------CcceeEeecCCCceEE
Confidence 999999987 67778899999999999998 55 89999999999999998642 1233455789999999
Q ss_pred EEEcc-------------CCCEEEEEeCCCcEEEEeCCCC----ceEEEEeccCCCeEEEEEccC---CCEEEEeeCCCc
Q 004214 386 LAVAP-------------NDSLVCTGSQDRTACVWRLPDL----VSVVTFRGHKRGIWSVEFSPV---DQVVITASGDKT 445 (768)
Q Consensus 386 ~~~s~-------------~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~~v~~v~~s~~---~~~l~t~~~d~~ 445 (768)
++|+| ++.++++|+.||.|++||++++ .....+.+|..+|++++|+|+ +++|++|+.||.
T Consensus 151 l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~ 230 (753)
T 3jro_A 151 ASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRT 230 (753)
T ss_dssp EEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSC
T ss_pred EEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCE
Confidence 99999 5899999999999999999876 556778899999999999999 899999999999
Q ss_pred EEEEeCCCCc-----eeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCC
Q 004214 446 IKIWSISDGS-----CLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRT 495 (768)
Q Consensus 446 i~iwd~~~~~-----~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 495 (768)
|++||+.++. .+....+|...|++++|+|+|++|++|+.||.|++|++.+
T Consensus 231 I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 231 CIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp EEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred EEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence 9999998874 3344456889999999999999999999999999999874
No 130
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.96 E-value=6.8e-28 Score=254.07 Aligned_cols=224 Identities=10% Similarity=0.072 Sum_probs=162.7
Q ss_pred eeecccCCceeEEEEec-------CCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeC
Q 004214 233 KRLVGYNEEILDLKFLG-------EEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSK 305 (768)
Q Consensus 233 ~~~~~~~~~i~~~~~~~-------~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~ 305 (768)
..+.||.+.|.+++|+| .++++||+++.|++|++||+.++.....+.+|...+.+++ +.|++..+|++|+.
T Consensus 130 ~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~--~~p~~~~~l~~~~~ 207 (393)
T 4gq1_A 130 GGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQ--FRPSNPNQLIVGER 207 (393)
T ss_dssp CTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEE--EETTEEEEEEEEET
T ss_pred cccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEE--ECCCCCceEEecCC
Confidence 45678999999999986 3678999999999999999999888888889999999998 77888777999999
Q ss_pred CCeEEEEeCCCceEEEe-------------------------eecccCcEEEEEEe-cCCCcEEEEEeCCCeEEEEeCCC
Q 004214 306 DNSVRLWDSESRCCVGV-------------------------GTGHMGAVGAVAFS-KKLQNFLVSGSSDHTIKVWSFDG 359 (768)
Q Consensus 306 dg~i~iwd~~~~~~~~~-------------------------~~~~~~~v~~~~~~-~~~~~~l~s~~~dg~i~iwd~~~ 359 (768)
||+|++||+.+++.... ..+|...+.++.|. |++. .+++++.|+++++||+..
T Consensus 208 d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~-~l~s~s~d~~i~vwd~~~ 286 (393)
T 4gq1_A 208 NGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGS-GILAMCKSGAWLRWNLFA 286 (393)
T ss_dssp TSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTC-EEEEECTTSEEEEEEC--
T ss_pred CCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCC-EEEEEeCCCCEEEEECcc
Confidence 99999999987654322 23577888999987 5644 899999999999999874
Q ss_pred CCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEcc-CCCEEE
Q 004214 360 LSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSP-VDQVVI 438 (768)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~ 438 (768)
.. ....+..|...+..+.+.|+.+.+ ..+...+..+.+.+ ++.+++
T Consensus 287 ~~----------~~~~l~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~ 333 (393)
T 4gq1_A 287 NN----------DYNEISDSTMKLGPKNLLPNVQGI-----------------------SLFPSLLGACPHPRYMDYFAT 333 (393)
T ss_dssp ---------------------------CCSCSEEEE-----------------------CSSCCSSCCEECSSCTTEEEE
T ss_pred CC----------CCceEeeecCccccEEEccccccc-----------------------cccCcceeEEEccCCCCEEEE
Confidence 32 222233455555555555543222 22222233333333 345677
Q ss_pred EeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEEC
Q 004214 439 TASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTV 493 (768)
Q Consensus 439 t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 493 (768)
+|+.||+|++||+.++.++..+.+|..+|++++|+|||++|++++.+| +.+|.+
T Consensus 334 sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 334 AHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp EETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred EECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence 888999999999999999999999999999999999999999999877 555554
No 131
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.95 E-value=2.9e-26 Score=242.93 Aligned_cols=288 Identities=13% Similarity=0.038 Sum_probs=218.1
Q ss_pred EEEeec----CCC----cEEEEEC--CCCEEE--EEEEcCCCcEEEEEEeeC--------------CCccEEEEEeCC--
Q 004214 2 FALLEG----ADR----KVLVWDV--DGGFCT--HYFKGHKGVVSSILFHPD--------------TDKSLLFSGSDD-- 53 (768)
Q Consensus 2 ~latg~----~dg----~i~vwd~--~~~~~~--~~l~gh~~~V~~l~~spd--------------~~~~~l~sg~~d-- 53 (768)
++|+|+ .|| .|++||+ .+++++ ..+.+|...+..+++++. +.+ ++.++.+
T Consensus 77 ~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~--l~~~s~~~~ 154 (415)
T 2hqs_A 77 AVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTR--IAYVVQTNG 154 (415)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCE--EEEEEECSS
T ss_pred EEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCE--EEEEEecCC
Confidence 466765 567 9999999 999887 558999999998888761 444 5554443
Q ss_pred ----CcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEeCCC---eEEEEECCCCeeeeeeecceeEeeEEecCC
Q 004214 54 ----ATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDK---VVNLWDLRDYSCKLTVPTYEMVEAVCAIPP 126 (768)
Q Consensus 54 ----g~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg---~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~ 126 (768)
+.|++||+. +.....+.+|...|.+++|+|||++|++++.++ .|++||+.+++..
T Consensus 155 ~~~~~~i~i~d~~-g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~----------------- 216 (415)
T 2hqs_A 155 GQFPYELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR----------------- 216 (415)
T ss_dssp SSCCEEEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-----------------
T ss_pred CCccceEEEEcCC-CCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-----------------
Confidence 799999996 555677888999999999999999999999775 7888877654321
Q ss_pred CCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceE
Q 004214 127 GSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLL 206 (768)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 206 (768)
T Consensus 217 -------------------------------------------------------------------------------- 216 (415)
T 2hqs_A 217 -------------------------------------------------------------------------------- 216 (415)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceE
Q 004214 207 CVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVL 286 (768)
Q Consensus 207 ~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~ 286 (768)
.+..|...+.
T Consensus 217 ----------------------------------------------------------------------~l~~~~~~~~ 226 (415)
T 2hqs_A 217 ----------------------------------------------------------------------QVASFPRHNG 226 (415)
T ss_dssp ----------------------------------------------------------------------EEECCSSCEE
T ss_pred ----------------------------------------------------------------------EeecCCCccc
Confidence 1111223344
Q ss_pred EEeeeeecCCCEEEEEEeCCC--eEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeC-CC--eEEEEeCCCCC
Q 004214 287 CLDTCALSSGKILIVTGSKDN--SVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSS-DH--TIKVWSFDGLS 361 (768)
Q Consensus 287 ~l~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-dg--~i~iwd~~~~~ 361 (768)
+++ ++|++..++++++.+| .|++||+.+++. ..+..|...+.+++|+|+++ .|++++. ++ .|.+||+..+.
T Consensus 227 ~~~--~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~-~l~~~s~~~g~~~i~~~d~~~~~ 302 (415)
T 2hqs_A 227 APA--FSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQ-NLAFTSDQAGRPQVYKVNINGGA 302 (415)
T ss_dssp EEE--ECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSS-EEEEEECTTSSCEEEEEETTSSC
T ss_pred CEE--EcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCC-EEEEEECCCCCcEEEEEECCCCC
Confidence 444 6666666444666555 499999988876 45677888999999999987 4555554 55 57777876432
Q ss_pred CCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCC---CcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEE
Q 004214 362 DDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQD---RTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVI 438 (768)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~ 438 (768)
......+...+.+++|+|+|++|++++.+ +.|++||+.+++.. .+..+. .+.+++|+|+|++|+
T Consensus 303 -----------~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~spdg~~l~ 369 (415)
T 2hqs_A 303 -----------PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAPNGTMVI 369 (415)
T ss_dssp -----------CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECTTSSEEE
T ss_pred -----------EEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcCCCCEEE
Confidence 12223456678899999999999988764 58999999988764 455554 899999999999999
Q ss_pred EeeCCC---cEEEEeCCCCceeEEeecCCCcEEEEEEEeCCC
Q 004214 439 TASGDK---TIKIWSISDGSCLKTFEGHTSSVLRASFLTRGA 477 (768)
Q Consensus 439 t~~~d~---~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~ 477 (768)
+++.++ .|++||+. +.....+.+|.+.|.+++|+|...
T Consensus 370 ~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 370 YSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp EEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCCCC
T ss_pred EEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCccccccc
Confidence 988877 79999986 677888999999999999999643
No 132
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.94 E-value=5e-25 Score=253.53 Aligned_cols=194 Identities=9% Similarity=0.056 Sum_probs=147.0
Q ss_pred EEEEEEecCCCcEEEEEeCCC---------------------------------eEEEEeCCC-CCCCCccccccceeeE
Q 004214 330 VGAVAFSKKLQNFLVSGSSDH---------------------------------TIKVWSFDG-LSDDAEQPMNLKAKAV 375 (768)
Q Consensus 330 v~~~~~~~~~~~~l~s~~~dg---------------------------------~i~iwd~~~-~~~~~~~~~~~~~~~~ 375 (768)
+.+++|+|+|+. |++++.|+ .|.+||+.. +.. ...
T Consensus 211 ~~~~~~SpDg~~-l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~----------~~~ 279 (741)
T 2ecf_A 211 HTGYWWAPDDSA-IAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQT----------QWI 279 (741)
T ss_dssp CCSEEECTTSSC-EEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCC----------EEE
T ss_pred ccceEECCCCCE-EEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCce----------EEe
Confidence 477899999874 66665544 788888865 321 111
Q ss_pred e--eccCCCeEEEEEccCCCEEEEEeC-----CCcEEEEeCCCCceEEEEeccCC----CeEEEEEccCCCEEEEeeCCC
Q 004214 376 V--AAHGKDINSLAVAPNDSLVCTGSQ-----DRTACVWRLPDLVSVVTFRGHKR----GIWSVEFSPVDQVVITASGDK 444 (768)
Q Consensus 376 ~--~~~~~~i~~~~~s~~~~~l~~~~~-----dg~i~i~d~~~~~~~~~~~~~~~----~v~~v~~s~~~~~l~t~~~d~ 444 (768)
. ..|...+.+++| |||+.|++++. +..|++||+.+++....+..+.. .+.+++|+|+|+++++++.||
T Consensus 280 ~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g 358 (741)
T 2ecf_A 280 DLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTG 358 (741)
T ss_dssp CCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTS
T ss_pred cCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCC
Confidence 1 146678899999 99999997764 56799999999988777766554 456899999999999999999
Q ss_pred cEEEEeCC-CCceeEEeecCCCcEEEE-EEEeCCCEEEE-EeCCC--cEEEEECCC-CeEEEEeccCCCcEEEEEEcCCC
Q 004214 445 TIKIWSIS-DGSCLKTFEGHTSSVLRA-SFLTRGAQIVS-CGADG--LVKLWTVRT-GECIATYDKHEDKIWALAVGKKT 518 (768)
Q Consensus 445 ~i~iwd~~-~~~~~~~~~~~~~~v~~~-~~s~~~~~l~s-~~~dg--~i~iwd~~~-~~~~~~~~~~~~~v~~l~~s~~~ 518 (768)
.++||.+. ++. ...+..|...+..+ .|+|+|+.|+. ++.++ .++||++.. +.....+.. ...+.+++|+|||
T Consensus 359 ~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~-~~~~~~~~~spdg 436 (741)
T 2ecf_A 359 FQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK-APGMHSASFARNA 436 (741)
T ss_dssp SCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC-SCSEEEEEECTTS
T ss_pred ccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-CCCceEEEECCCC
Confidence 88888765 455 78888888889887 59999998754 44455 899999874 665666664 6678899999999
Q ss_pred CEEEEEeCC----CcEEEEEcCC
Q 004214 519 EMFATGGSD----ALVNLWHDST 537 (768)
Q Consensus 519 ~~l~s~~~d----g~v~vw~~~~ 537 (768)
++|+....+ +.+.+|+...
T Consensus 437 ~~l~~~~~~~~~p~~~~l~~~~~ 459 (741)
T 2ecf_A 437 SVYVDSWSNNSTPPQIELFRANG 459 (741)
T ss_dssp SEEEEEEEETTEEEEEEEEETTS
T ss_pred CEEEEEecCCCCCCeEEEEEcCC
Confidence 998876544 4588888643
No 133
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.94 E-value=7.4e-25 Score=232.07 Aligned_cols=238 Identities=11% Similarity=0.071 Sum_probs=193.9
Q ss_pred CcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCC---eEEEEeCCCceEEEeeecccCcEEEEEEecC
Q 004214 262 EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDN---SVRLWDSESRCCVGVGTGHMGAVGAVAFSKK 338 (768)
Q Consensus 262 ~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~ 338 (768)
+.|++||... .....+.+|...+.+++ ++|++.. |++++.++ .|++||+.+++.. .+..|...+.+++|+|+
T Consensus 159 ~~i~i~d~~g-~~~~~l~~~~~~v~~~~--~Spdg~~-la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spd 233 (415)
T 2hqs_A 159 YELRVSDYDG-YNQFVVHRSPQPLMSPA--WSPDGSK-LAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPD 233 (415)
T ss_dssp EEEEEEETTS-CSCEEEEEESSCEEEEE--ECTTSSE-EEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTT
T ss_pred ceEEEEcCCC-CCCEEEeCCCCcceeeE--EcCCCCE-EEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCC
Confidence 7999999974 45667888999999998 7788876 78887775 9999999998775 45678889999999999
Q ss_pred CCcEEEEEeCCCe--EEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeC-CC--cEEEEeCCCCc
Q 004214 339 LQNFLVSGSSDHT--IKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ-DR--TACVWRLPDLV 413 (768)
Q Consensus 339 ~~~~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg--~i~i~d~~~~~ 413 (768)
|+.++++++.++. |.+||+..+. ...+..|...+.+++|+|+|+.|++++. ++ .|++||+.+++
T Consensus 234 g~~la~~~~~~g~~~i~~~d~~~~~-----------~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~ 302 (415)
T 2hqs_A 234 GSKLAFALSKTGSLNLYVMDLASGQ-----------IRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA 302 (415)
T ss_dssp SSEEEEEECTTSSCEEEEEETTTCC-----------EEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC
T ss_pred CCEEEEEEecCCCceEEEEECCCCC-----------EEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCC
Confidence 8855557776655 8999987531 2344567788999999999999998886 44 67888988876
Q ss_pred eEEEEeccCCCeEEEEEccCCCEEEEeeCC---CcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCC---c
Q 004214 414 SVVTFRGHKRGIWSVEFSPVDQVVITASGD---KTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADG---L 487 (768)
Q Consensus 414 ~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d---~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg---~ 487 (768)
. ..+..+...+.+++|+|+|++|++++.+ ..|++||+.++++ ..+..|. .+.+++|+|+|++|++++.++ .
T Consensus 303 ~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~-~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~ 379 (415)
T 2hqs_A 303 P-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTF-LDETPSLAPNGTMVIYSSSQGMGSV 379 (415)
T ss_dssp C-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECCCSS-SCEEEEECTTSSEEEEEEEETTEEE
T ss_pred E-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE-EEecCCC-CcCCeEEcCCCCEEEEEEcCCCccE
Confidence 4 3455677789999999999999988764 5899999998877 4555554 899999999999999988877 7
Q ss_pred EEEEECCCCeEEEEeccCCCcEEEEEEcCCCC
Q 004214 488 VKLWTVRTGECIATYDKHEDKIWALAVGKKTE 519 (768)
Q Consensus 488 i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~ 519 (768)
|++||+. +.....+..|.+.|.+++|+|...
T Consensus 380 l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 380 LNLVSTD-GRFKARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp EEEEETT-SCCEEECCCSSSEEEEEEECCCCC
T ss_pred EEEEECC-CCcEEEeeCCCCCCcCCccccccc
Confidence 9999986 666778888999999999999754
No 134
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.92 E-value=8.2e-24 Score=242.76 Aligned_cols=353 Identities=11% Similarity=0.060 Sum_probs=228.6
Q ss_pred CcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccc---eeEEEEEcCCCCEEEEEeCC---------CeE
Q 004214 31 GVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFS---RVTSMAITSDGSTLISAGRD---------KVV 98 (768)
Q Consensus 31 ~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~---~V~~l~fs~d~~~L~s~~~d---------g~i 98 (768)
..+.+++|+|||++ +++ +.||+|++||+.+++....+.+|.. .|.+++|||||++|++++.+ +.+
T Consensus 17 ~~~~~~~~spdg~~--~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i 93 (723)
T 1xfd_A 17 IHDPEAKWISDTEF--IYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYY 93 (723)
T ss_dssp CCCCCCCBSSSSCB--CCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEE
T ss_pred ccccccEEcCCCcE--EEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeE
Confidence 34678899999986 666 7899999999999998888887765 49999999999999999875 566
Q ss_pred EEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCC
Q 004214 99 NLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSS 178 (768)
Q Consensus 99 ~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~ 178 (768)
.+||+.+++. ..+...
T Consensus 94 ~~~d~~~~~~-~~l~~~--------------------------------------------------------------- 109 (723)
T 1xfd_A 94 VLSKIPHGDP-QSLDPP--------------------------------------------------------------- 109 (723)
T ss_dssp EEEESSSCCC-EECCCT---------------------------------------------------------------
T ss_pred EEEECCCCce-EeccCC---------------------------------------------------------------
Confidence 7777766553 111100
Q ss_pred ceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEE
Q 004214 179 DVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVA 258 (768)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 258 (768)
.++...+..++|+| +++.++.+
T Consensus 110 ---------------------------------------------------------~~~~~~~~~~~~SP-dG~~la~~ 131 (723)
T 1xfd_A 110 ---------------------------------------------------------EVSNAKLQYAGWGP-KGQQLIFI 131 (723)
T ss_dssp ---------------------------------------------------------TCCSCCCSBCCBCS-STTCEEEE
T ss_pred ---------------------------------------------------------ccccccccccEECC-CCCEEEEE
Confidence 00111123333332 44444444
Q ss_pred eCCCcEEEEECCCceeeeeeeCCccc------------------eEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEE
Q 004214 259 TNIEQVQVYDLSSMSCSYVLAGHSEI------------------VLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCV 320 (768)
Q Consensus 259 ~~~~~i~i~d~~~~~~~~~~~~~~~~------------------v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 320 (768)
+. +.|++||+.++........+... +.++. ++|+++.++++...++.+.+|++....
T Consensus 132 ~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~--~SpDg~~la~~~~~~~~~~~~~~~~~~-- 206 (723)
T 1xfd_A 132 FE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHW--WSPDGTRLAYAAINDSRVPIMELPTYT-- 206 (723)
T ss_dssp ET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEE--ECTTSSEEEEEEEECTTSCEEEECCCS--
T ss_pred EC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEE--ECCCCCEEEEEEECCCccceEEeeccC--
Confidence 44 45666666655554444333222 25565 778888744444445677788764321
Q ss_pred EeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeC
Q 004214 321 GVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ 400 (768)
Q Consensus 321 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 400 (768)
..+...+..+.|.++|.. ..+..|.+||+....... ..........+...+.+++|+|||+++++...
T Consensus 207 ---~~~~~~~~~~~~~~~G~~-----~~~~~l~~~d~~~~~~~~----~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~ 274 (723)
T 1xfd_A 207 ---GSIYPTVKPYHYPKAGSE-----NPSISLHVIGLNGPTHDL----EMMPPDDPRMREYYITMVKWATSTKVAVTWLN 274 (723)
T ss_dssp ---SSSSCCCEEEECCBTTSC-----CCEEEEEEEESSSSCCCE----ECCCCCCGGGSSEEEEEEEESSSSEEEEEEEE
T ss_pred ---CcCCCcceeccCCCCCCC-----CCeeEEEEEECCCCceeE----EeeCCccCCCccceeEEEEEeCCCeEEEEEEc
Confidence 113345788888887652 334589999997543110 00000011123567899999999998877653
Q ss_pred ----CCcEEEEeCCCCceEEEEecc-CCCe----EEEEEccCCCEEEE--eeCCC------cEEEEe-CCCCc--eeEEe
Q 004214 401 ----DRTACVWRLPDLVSVVTFRGH-KRGI----WSVEFSPVDQVVIT--ASGDK------TIKIWS-ISDGS--CLKTF 460 (768)
Q Consensus 401 ----dg~i~i~d~~~~~~~~~~~~~-~~~v----~~v~~s~~~~~l~t--~~~d~------~i~iwd-~~~~~--~~~~~ 460 (768)
+..|++||+.+++....+..+ ...+ ..++|+|||+.|+. +..++ .|.+|| ...+. +...+
T Consensus 275 ~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l 354 (723)
T 1xfd_A 275 RAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSI 354 (723)
T ss_dssp TTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBS
T ss_pred CCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEe
Confidence 357999999998877665543 3333 37899999997665 45666 577777 34444 15556
Q ss_pred ecCCCcEEE-EEEEeCCCEEEEEeCC---CcEEEEECCCC--eEEEEecc---CCCcEEEEEEcCCCCEEEEEe
Q 004214 461 EGHTSSVLR-ASFLTRGAQIVSCGAD---GLVKLWTVRTG--ECIATYDK---HEDKIWALAVGKKTEMFATGG 525 (768)
Q Consensus 461 ~~~~~~v~~-~~~s~~~~~l~s~~~d---g~i~iwd~~~~--~~~~~~~~---~~~~v~~l~~s~~~~~l~s~~ 525 (768)
..+...+.. ++|+|+|++|+..+.+ +.+++|++... .....+.. |...+..++|+|+|++|+...
T Consensus 355 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~ 428 (723)
T 1xfd_A 355 TSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKC 428 (723)
T ss_dssp CCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEEC
T ss_pred ecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEc
Confidence 544455554 6999999999766655 78999998643 23334443 567788999999999888654
No 135
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.92 E-value=1.3e-22 Score=231.90 Aligned_cols=216 Identities=11% Similarity=0.109 Sum_probs=146.9
Q ss_pred CCCeEEEEeCCCceEEEeee--cccCcEEEEEEecCCCcEEEEEeCCC-----eEEEEeCCCCCCCCccccccceeeEe-
Q 004214 305 KDNSVRLWDSESRCCVGVGT--GHMGAVGAVAFSKKLQNFLVSGSSDH-----TIKVWSFDGLSDDAEQPMNLKAKAVV- 376 (768)
Q Consensus 305 ~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~- 376 (768)
.++.|++||+.+++...... .|...+.+++|+|+|+ .+++++.++ .|.+||+..+. ......
T Consensus 233 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~-~l~~~~~~~~~~~~~v~~~d~~~g~---------~~~~~~~ 302 (706)
T 2z3z_A 233 HHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDEN-ILYVAEVNRAQNECKVNAYDAETGR---------FVRTLFV 302 (706)
T ss_dssp CEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSS-EEEEEEECTTSCEEEEEEEETTTCC---------EEEEEEE
T ss_pred CeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCC-EEEEEEeCCCCCeeEEEEEECCCCc---------eeeEEEE
Confidence 44689999999988765543 4667899999999987 567666665 89999987541 011111
Q ss_pred eccCC---CeEEEEEcc--CCCEEEEEeCCCcEEEEeCC-CCceEEEEeccCCCeEE-EEEccCCCEEEEeeC-CC----
Q 004214 377 AAHGK---DINSLAVAP--NDSLVCTGSQDRTACVWRLP-DLVSVVTFRGHKRGIWS-VEFSPVDQVVITASG-DK---- 444 (768)
Q Consensus 377 ~~~~~---~i~~~~~s~--~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~v~~-v~~s~~~~~l~t~~~-d~---- 444 (768)
..+.. .+.+++|+| +|++++++..||.+++|.+. ++..+..+..+...+.+ ++|+|+++.|+.++. ++
T Consensus 303 ~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~ 382 (706)
T 2z3z_A 303 ETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLER 382 (706)
T ss_dssp EECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCB
T ss_pred ccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceE
Confidence 11221 246789999 99999999999999999886 66777788888888877 799999987766554 33
Q ss_pred cEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCC----CcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCE
Q 004214 445 TIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGAD----GLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEM 520 (768)
Q Consensus 445 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~ 520 (768)
.|..||+.++. ...+. |...+.+++|+|+|++++.++.+ +.|++||+.+++ ...+. +..++....+.+.. .
T Consensus 383 ~l~~~d~~~~~-~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~-~~~~~-~~~~~~~~~~~~~~-~ 457 (706)
T 2z3z_A 383 HFYCIDIKGGK-TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS-HTLLE-AKNPDTGYAMPEIR-T 457 (706)
T ss_dssp EEEEEETTCCC-CEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE-EEEEE-CC------CCCCEE-E
T ss_pred EEEEEEcCCCC-ceecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe-Eeecc-ccchhhhcCCCCcE-E
Confidence 67777877765 44444 67789999999999998876543 469999999887 43333 44444444333222 2
Q ss_pred EEEEeCCC--cEEEEEc
Q 004214 521 FATGGSDA--LVNLWHD 535 (768)
Q Consensus 521 l~s~~~dg--~v~vw~~ 535 (768)
+...+.|| .+..|-.
T Consensus 458 ~~~~~~~g~~~~~~~~~ 474 (706)
T 2z3z_A 458 GTIMAADGQTPLYYKLT 474 (706)
T ss_dssp EEEECTTSSSEEEEEEE
T ss_pred EEEEcCCCCEEEEEEEE
Confidence 22333444 4554443
No 136
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.92 E-value=2.6e-22 Score=206.66 Aligned_cols=276 Identities=11% Similarity=0.084 Sum_probs=204.5
Q ss_pred EecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceE-EEeeec
Q 004214 247 FLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC-VGVGTG 325 (768)
Q Consensus 247 ~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~ 325 (768)
|.......++++..++.|.+||..+++....+..+...+ +++ +.++++.+++++..++.|.+||..+++. ...+..
T Consensus 5 ~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~--~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~ 81 (331)
T 3u4y_A 5 FQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTA--ITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE 81 (331)
T ss_dssp --CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEE--ECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE
T ss_pred EcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEE--EcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc
Confidence 444455667788889999999999999888877766666 776 7788887566666689999999999887 777777
Q ss_pred ccCcEEEEEEecCCCcEEEEEeCC-C--eEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEE-eCC
Q 004214 326 HMGAVGAVAFSKKLQNFLVSGSSD-H--TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTG-SQD 401 (768)
Q Consensus 326 ~~~~v~~~~~~~~~~~~l~s~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~d 401 (768)
+..+..+++|+|+++ +++++..+ + .|.+||+.... ..... .....+.+++|+|+|++++++ ..+
T Consensus 82 ~~~~~~~~~~s~dg~-~l~~~~~~~~~~~i~v~d~~~~~----------~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~ 149 (331)
T 3u4y_A 82 GQSSMADVDITPDDQ-FAVTVTGLNHPFNMQSYSFLKNK----------FISTI-PIPYDAVGIAISPNGNGLILIDRSS 149 (331)
T ss_dssp CSSCCCCEEECTTSS-EEEECCCSSSSCEEEEEETTTTE----------EEEEE-ECCTTEEEEEECTTSSCEEEEEETT
T ss_pred CCCCccceEECCCCC-EEEEecCCCCcccEEEEECCCCC----------eEEEE-ECCCCccceEECCCCCEEEEEecCC
Confidence 777766699999987 55555544 3 89999987432 22222 234567899999999865554 556
Q ss_pred Cc-EEEEeCCCCceE----EEEeccCCCeEEEEEccCCCEEEE-eeCCCcEEEEeCCCCce---eEEeecCCCcEEEEEE
Q 004214 402 RT-ACVWRLPDLVSV----VTFRGHKRGIWSVEFSPVDQVVIT-ASGDKTIKIWSISDGSC---LKTFEGHTSSVLRASF 472 (768)
Q Consensus 402 g~-i~i~d~~~~~~~----~~~~~~~~~v~~v~~s~~~~~l~t-~~~d~~i~iwd~~~~~~---~~~~~~~~~~v~~~~~ 472 (768)
+. |.+|++.....+ .........+..++|+|+|+++++ +..++.|++||+.+++. +..+.. ...+..++|
T Consensus 150 ~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~-~~~~~~~~~ 228 (331)
T 3u4y_A 150 ANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT-NNLPGTIVV 228 (331)
T ss_dssp TTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC-SSCCCCEEE
T ss_pred CceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC-CCCCceEEE
Confidence 88 999998764332 122234556899999999996554 45689999999999998 777774 466788999
Q ss_pred EeCCCEEEEEe-CCCcEEEEECCCCeE--EEEeccC----CCc---EEEEEEcCCCCEEEEEe-CCCcEEEEEcCCH
Q 004214 473 LTRGAQIVSCG-ADGLVKLWTVRTGEC--IATYDKH----EDK---IWALAVGKKTEMFATGG-SDALVNLWHDSTA 538 (768)
Q Consensus 473 s~~~~~l~s~~-~dg~i~iwd~~~~~~--~~~~~~~----~~~---v~~l~~s~~~~~l~s~~-~dg~v~vw~~~~~ 538 (768)
+|+|++|++++ .++.|.+||+.+++. +..+..+ ... ..+++|+|++++|++++ .++.|.+|++.+.
T Consensus 229 spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 229 SRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGK 305 (331)
T ss_dssp CTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSC
T ss_pred CCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCC
Confidence 99999876655 477899999999987 4444322 222 24589999999886655 4669999998753
No 137
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.91 E-value=8.4e-23 Score=234.96 Aligned_cols=356 Identities=11% Similarity=0.106 Sum_probs=238.1
Q ss_pred EEEeecC-CC-----cEEEEECCCCEEEEEEEcCCCc------------------------EEEEEEeeCCCccEEEEEe
Q 004214 2 FALLEGA-DR-----KVLVWDVDGGFCTHYFKGHKGV------------------------VSSILFHPDTDKSLLFSGS 51 (768)
Q Consensus 2 ~latg~~-dg-----~i~vwd~~~~~~~~~l~gh~~~------------------------V~~l~~spd~~~~~l~sg~ 51 (768)
+||+++. |+ .|.+||+.+++....+.+|... |.+++|||||++ |++++
T Consensus 50 ~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg~~--l~~~~ 127 (741)
T 2ecf_A 50 RVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDAQR--LLFPL 127 (741)
T ss_dssp EEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECTTSSE--EEEEE
T ss_pred EEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCCCE--EEEEe
Confidence 5777777 88 9999999999987777765433 889999999998 77777
Q ss_pred CCCcEEEEECCCCe--eEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccee-EeeEEecCCCC
Q 004214 52 DDATVRVWDLLAKK--CVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEM-VEAVCAIPPGS 128 (768)
Q Consensus 52 ~dg~I~iWd~~~~~--~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~-v~~~~~~~~~~ 128 (768)
. +.|.+||+.++. .+..+..|...+.+++|||||++|++++. +.|.+||+.+++.......... +.
T Consensus 128 ~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~~~~~~~~~~~~~--------- 196 (741)
T 2ecf_A 128 G-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQMQLTADGSTTIG--------- 196 (741)
T ss_dssp T-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTEEEECCCCCCSSEE---------
T ss_pred C-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCCCEEEeccCCcccee---------
Confidence 5 999999998883 45567778889999999999999999884 6899999998775433221110 00
Q ss_pred CccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEE
Q 004214 129 AFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCV 208 (768)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 208 (768)
.+.. .............+.|+|++..++.+
T Consensus 197 --------------------------~g~~------------------------~~v~~~~~~~~~~~~~SpDg~~l~~~ 226 (741)
T 2ecf_A 197 --------------------------NGIA------------------------EFVADEEMDRHTGYWWAPDDSAIAYA 226 (741)
T ss_dssp --------------------------ESCC------------------------CHHHHHHSCCCCSEEECTTSSCEEEE
T ss_pred --------------------------cccc------------------------ceeeeeccccccceEECCCCCEEEEE
Confidence 0000 00000000123456677777777776
Q ss_pred EecC-eEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCC-ceeeeeee--CCccc
Q 004214 209 TADQ-QLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSS-MSCSYVLA--GHSEI 284 (768)
Q Consensus 209 ~~dg-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~-~~~~~~~~--~~~~~ 284 (768)
+.++ .+..|... ........+..+.|...... .....|.+||+.+ ++...... .|...
T Consensus 227 ~~d~~~~~~~~~~-------------~~~p~~~~~~~~~~~~~g~~-----~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 288 (741)
T 2ecf_A 227 RIDESPVPVQKRY-------------EVYADRTDVIEQRYPAAGDA-----NVQVKLGVISPAEQAQTQWIDLGKEQDIY 288 (741)
T ss_dssp EEECTTSCEEEEE-------------EECSSCEEEEEEECCBTTSC-----CCEEEEEEECSSTTCCCEEECCCSCSSEE
T ss_pred EEcCCCCceEecC-------------CCCCCcccceEeecCCCCCC-----CCeeEEEEEECCCCCceEEecCCCCcceE
Confidence 6543 22222200 00011112333333221110 0112678889988 77654443 47778
Q ss_pred eEEEeeeeecCCCEEEEEEe----CCCeEEEEeCCCceEEEeeecccC----cEEEEEEecCCCcEEEEEeCCCeEEEEe
Q 004214 285 VLCLDTCALSSGKILIVTGS----KDNSVRLWDSESRCCVGVGTGHMG----AVGAVAFSKKLQNFLVSGSSDHTIKVWS 356 (768)
Q Consensus 285 v~~l~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~~~~~~~~~~----~v~~~~~~~~~~~~l~s~~~dg~i~iwd 356 (768)
+..+. + ++++.+++++. .++.|++||+.+++....+..+.. .+..++|+|+|+ ++++++.||.+++|.
T Consensus 289 ~~~~~--~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~-~~~~~~~~g~~~l~~ 364 (741)
T 2ecf_A 289 LARVN--W-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGS-ILWSSERTGFQHLYR 364 (741)
T ss_dssp EEEEE--E-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSC-EEEEECTTSSCEEEE
T ss_pred EEEEE--e-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCe-EEEEecCCCccEEEE
Confidence 88887 7 88887444443 357899999999988777766553 456889999988 889999999888887
Q ss_pred CCCCCCCCccccccceeeEeeccCCCeEEE-EEccCCCEEEEE-eCCC--cEEEEeCCC-CceEEEEeccCCCeEEEEEc
Q 004214 357 FDGLSDDAEQPMNLKAKAVVAAHGKDINSL-AVAPNDSLVCTG-SQDR--TACVWRLPD-LVSVVTFRGHKRGIWSVEFS 431 (768)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~s~~~~~l~~~-~~dg--~i~i~d~~~-~~~~~~~~~~~~~v~~v~~s 431 (768)
++.. .. ...+..+...+..+ .|+|+++.|+.. +.++ .+++|++.. +.....+.. ...+.+++|+
T Consensus 365 ~~~~---------~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~-~~~~~~~~~s 433 (741)
T 2ecf_A 365 IDSK---------GK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK-APGMHSASFA 433 (741)
T ss_dssp ECSS---------SC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC-SCSEEEEEEC
T ss_pred EcCC---------CC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-CCCceEEEEC
Confidence 7621 11 33445566778777 599999877654 4455 899999864 555566665 6678999999
Q ss_pred cCCCEEEEeeCC----CcEEEEeCCC
Q 004214 432 PVDQVVITASGD----KTIKIWSISD 453 (768)
Q Consensus 432 ~~~~~l~t~~~d----~~i~iwd~~~ 453 (768)
|+|+.|+....+ ..+.+|+...
T Consensus 434 pdg~~l~~~~~~~~~p~~~~l~~~~~ 459 (741)
T 2ecf_A 434 RNASVYVDSWSNNSTPPQIELFRANG 459 (741)
T ss_dssp TTSSEEEEEEEETTEEEEEEEEETTS
T ss_pred CCCCEEEEEecCCCCCCeEEEEEcCC
Confidence 999988876543 4688999754
No 138
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.91 E-value=1.7e-21 Score=202.51 Aligned_cols=271 Identities=13% Similarity=0.112 Sum_probs=212.6
Q ss_pred CceeEEEEecCCCCEEEEEeC-------CCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEE
Q 004214 240 EEILDLKFLGEEEQYLAVATN-------IEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLW 312 (768)
Q Consensus 240 ~~i~~~~~~~~~~~~l~~~~~-------~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iw 312 (768)
..+..++|++ +++.+++++. ++.|.+||..+++....+..... +.++. +.++++.+++++..++.|.+|
T Consensus 41 ~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~--~s~dg~~l~v~~~~~~~v~~~ 116 (353)
T 3vgz_A 41 KGAYEMAYSQ-QENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLK-PFGAT--INNTTQTLWFGNTVNSAVTAI 116 (353)
T ss_dssp SSEEEEEEET-TTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSC-CCSEE--EETTTTEEEEEETTTTEEEEE
T ss_pred cCccceEECC-CCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCC-cceEE--ECCCCCEEEEEecCCCEEEEE
Confidence 3567788886 5555666553 56899999999988877765433 44554 778888767777778999999
Q ss_pred eCCCceEEEeeecccCc---------EEEEEEecCCCcEEEEE-eCCCeEEEEeCCCCCCCCccccccceeeEeeccCCC
Q 004214 313 DSESRCCVGVGTGHMGA---------VGAVAFSKKLQNFLVSG-SSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKD 382 (768)
Q Consensus 313 d~~~~~~~~~~~~~~~~---------v~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (768)
|..+++.+..+..+... +.+++|+|+++.+++++ +.++.|.+||.... ........+...
T Consensus 117 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~----------~~~~~~~~~~~~ 186 (353)
T 3vgz_A 117 DAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNI----------KLKTAIQNTGKM 186 (353)
T ss_dssp ETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTT----------EEEEEECCCCTT
T ss_pred eCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCC----------ceEEEecCCCCc
Confidence 99999988877765432 78899999988555554 35889999998743 233333335556
Q ss_pred eEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEec----cCCCeEEEEEccCCCEEEEeeC-CCcEEEEeCCCCcee
Q 004214 383 INSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG----HKRGIWSVEFSPVDQVVITASG-DKTIKIWSISDGSCL 457 (768)
Q Consensus 383 i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~v~~v~~s~~~~~l~t~~~-d~~i~iwd~~~~~~~ 457 (768)
+.+++|+|+++.+++++.++.|.+||+.+++....+.. +...+.+++|+|+++.+++++. ++.|.+||+.+++.+
T Consensus 187 ~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~ 266 (353)
T 3vgz_A 187 STGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNIL 266 (353)
T ss_dssp CCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEE
T ss_pred cceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEE
Confidence 88999999999999999999999999999998887764 4556888999999997776665 599999999999998
Q ss_pred EEeecCCCcEEEEEEEeCCCEEEEEe-CCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCC
Q 004214 458 KTFEGHTSSVLRASFLTRGAQIVSCG-ADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSD 527 (768)
Q Consensus 458 ~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~d 527 (768)
..+..+.. ..++|+|+|+++++++ .++.|.+||..+++.+..+.. ...+.+++|+|+|++|+++..+
T Consensus 267 ~~~~~~~~--~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 267 AKVAAPES--LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDT-PTHPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp EEEECSSC--CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEEC-CSEEEEEEECTTSCEEEEEEEC
T ss_pred EEEEcCCC--ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEec-CCCCCeEEEcCCCCEEEEEEcc
Confidence 88875442 5699999999776665 689999999999999988874 4578999999999977766655
No 139
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.91 E-value=6.8e-22 Score=203.99 Aligned_cols=297 Identities=13% Similarity=0.013 Sum_probs=194.1
Q ss_pred EEEeecCCCcEEEEECCCCEEEEEEEcCC-C-cEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecC-c----c
Q 004214 2 FALLEGADRKVLVWDVDGGFCTHYFKGHK-G-VVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDK-H----F 74 (768)
Q Consensus 2 ~latg~~dg~i~vwd~~~~~~~~~l~gh~-~-~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~-h----~ 74 (768)
++++++.++.|.+||..+++.+..+.... . .+.+++|+|+|+. ++++++.++.|.+||+.+++.+..+.. + .
T Consensus 3 ~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~-l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 81 (337)
T 1pby_B 3 YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRI-AYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSE-EEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred EEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCE-EEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence 68899999999999999999888887332 2 5889999999875 345667789999999999998877753 2 2
Q ss_pred ceeEEEEEcCCCCEEEEEe------------CCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhh
Q 004214 75 SRVTSMAITSDGSTLISAG------------RDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTI 142 (768)
Q Consensus 75 ~~V~~l~fs~d~~~L~s~~------------~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 142 (768)
..+.+++|+|+|++|++++ .++.|.+||+.+++....+.....
T Consensus 82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~------------------------- 136 (337)
T 1pby_B 82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQ------------------------- 136 (337)
T ss_dssp ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSS-------------------------
T ss_pred ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCC-------------------------
Confidence 3688999999999999886 568888888877654433322111
Q ss_pred hcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccC
Q 004214 143 KKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEV 222 (768)
Q Consensus 143 ~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~ 222 (768)
T Consensus 137 -------------------------------------------------------------------------------- 136 (337)
T 1pby_B 137 -------------------------------------------------------------------------------- 136 (337)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCc--cceEEEeeeeecCCCEEE
Q 004214 223 PEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHS--EIVLCLDTCALSSGKILI 300 (768)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~--~~v~~l~~~~~~~~~~~l 300 (768)
+..++|++ ++++++++ ++.|.+||+.+++....+..+. .++ . +.+++.. +
T Consensus 137 -------------------~~~~~~s~-dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~---~--~s~dg~~-l 188 (337)
T 1pby_B 137 -------------------ITMLAWAR-DGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAET---Y--AQPDVLA-V 188 (337)
T ss_dssp -------------------CCCEEECT-TSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTT---B--CCCBCCC-C
T ss_pred -------------------cceeEECC-CCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCc---e--eCCCccE-E
Confidence 12233332 33334444 3566777766666554443322 111 1 2333332 1
Q ss_pred EEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccC
Q 004214 301 VTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHG 380 (768)
Q Consensus 301 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 380 (768)
+.. ....+.... +........+..... .....|.+||+..... . ......+.
T Consensus 189 ~~~---------~~~~~~~~~--------~~~~~~~~~~~~~~~--~~~~~v~~~d~~~~~~--------~-~~~~~~~~ 240 (337)
T 1pby_B 189 WNQ---------HESSGVMAT--------PFYTARKDIDPADPT--AYRTGLLTMDLETGEM--------A-MREVRIMD 240 (337)
T ss_dssp CCC---------CTTTTEEEE--------EEEEEBTTSCTTSGG--GEEEEEEEEETTTCCE--------E-EEEEEECS
T ss_pred eee---------ccCCCceee--------eeecccccccccccc--ccccceEEEeCCCCCc--------e-EeecCCCC
Confidence 110 000000000 000000000000000 0011678999875421 1 22334566
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEe
Q 004214 381 KDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTF 460 (768)
Q Consensus 381 ~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~ 460 (768)
..+.+++|+|++++++++ ++.|.+||+.+++.+..+.. ...+.+++|+|+|++|++++.++.|++||+.+++.+..+
T Consensus 241 ~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~ 317 (337)
T 1pby_B 241 VFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPL-PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQV 317 (337)
T ss_dssp SCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEEC-SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEE
T ss_pred CceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecC-CCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEE
Confidence 778899999999999988 79999999999988887764 356789999999999999999999999999999988888
Q ss_pred ecC
Q 004214 461 EGH 463 (768)
Q Consensus 461 ~~~ 463 (768)
..+
T Consensus 318 ~~~ 320 (337)
T 1pby_B 318 DLP 320 (337)
T ss_dssp ECG
T ss_pred EcC
Confidence 754
No 140
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.90 E-value=9.1e-22 Score=224.94 Aligned_cols=336 Identities=12% Similarity=0.040 Sum_probs=210.7
Q ss_pred EEeecCCCcEEEEECCCCEEE-EEEEcCC-----------------CcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCC
Q 004214 3 ALLEGADRKVLVWDVDGGFCT-HYFKGHK-----------------GVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK 64 (768)
Q Consensus 3 latg~~dg~i~vwd~~~~~~~-~~l~gh~-----------------~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~ 64 (768)
+++++.++ | +||+.+|+.+ ..+..|. ..|.+++|||| .. ++.+ .++.|++||+.++
T Consensus 38 ~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~--~~~~-~~~~i~~~d~~~~ 111 (706)
T 2z3z_A 38 YVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GL--VVLF-TQGGLVGFDMLAR 111 (706)
T ss_dssp EEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TE--EEEE-ETTEEEEEETTTT
T ss_pred EEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-Ce--EEEE-ECCEEEEEECCCC
Confidence 34555667 8 9999999874 5555554 56999999999 54 4333 3599999999988
Q ss_pred eeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEEECCC-----Ceeeeeeeccee---------------EeeEEec
Q 004214 65 KCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRD-----YSCKLTVPTYEM---------------VEAVCAI 124 (768)
Q Consensus 65 ~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~~-----~~~~~~~~~~~~---------------v~~~~~~ 124 (768)
+... +..+...+.+++|||||++|+++ .++.|++||+.+ ++.......... +..+.|+
T Consensus 112 ~~~~-l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~S 189 (706)
T 2z3z_A 112 KVTY-LFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWS 189 (706)
T ss_dssp EEEE-EECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEEC
T ss_pred ceEE-ccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEEC
Confidence 7654 44467789999999999999985 679999999998 776554333222 4778899
Q ss_pred CCCCCccccccccchhhhhcccCCcceEEEEeeCC-cE---EEEEEcCCceeeeecCCceeecccccCcccceeEEEEcc
Q 004214 125 PPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGER-GI---VRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLP 200 (768)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~---i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (768)
|++. .++.++.+ .. +.+.+.... ........+..
T Consensus 190 pDg~-----------------------~la~~~~d~~~~~~~~~~~~~~~-------------------~~~~~~~~y~~ 227 (706)
T 2z3z_A 190 PKGS-----------------------CLAFYRMDQSMVKPTPIVDYHPL-------------------EAESKPLYYPM 227 (706)
T ss_dssp TTSS-----------------------EEEEEEEECTTSCCEEEEECCSS-------------------SCEEEEECCCB
T ss_pred CCCC-----------------------EEEEEEECCCCCceEEeeccCCC-------------------CCceEEeeCCC
Confidence 9887 33333311 11 111111100 00000000000
Q ss_pred CCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCC-----cEEEEECCCc-ee
Q 004214 201 SNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIE-----QVQVYDLSSM-SC 274 (768)
Q Consensus 201 ~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~-----~i~i~d~~~~-~~ 274 (768)
.+. ...+..+.+|++..... ........+...+..++|++ +++.+++++.++ .|.+||+.++ ..
T Consensus 228 ~g~----~~~~~~l~~~d~~~~~~-----~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~v~~~d~~~g~~~ 297 (706)
T 2z3z_A 228 AGT----PSHHVTVGIYHLATGKT-----VYLQTGEPKEKFLTNLSWSP-DENILYVAEVNRAQNECKVNAYDAETGRFV 297 (706)
T ss_dssp TTS----CCCEEEEEEEETTTTEE-----EECCCCSCTTCEEEEEEECT-TSSEEEEEEECTTSCEEEEEEEETTTCCEE
T ss_pred CCC----CCCeeEEEEEECCCCce-----EeeccCCCCceeEeeEEEEC-CCCEEEEEEeCCCCCeeEEEEEECCCCcee
Confidence 010 11235677777654321 11111124556788899985 667777766554 8999999998 43
Q ss_pred eeeeeC-Ccc---ceEEEeeeeec--CCCEEEEEEeCCCeEEEEeCC-CceEEEeeecccCcEEE-EEEecCCCcEEEEE
Q 004214 275 SYVLAG-HSE---IVLCLDTCALS--SGKILIVTGSKDNSVRLWDSE-SRCCVGVGTGHMGAVGA-VAFSKKLQNFLVSG 346 (768)
Q Consensus 275 ~~~~~~-~~~---~v~~l~~~~~~--~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~-~~~~~~~~~~l~s~ 346 (768)
...... +.. .+.++. +++ +++ ++++++.+|.+++|.+. ++..+..+..+...+.. ++|+|+++.+++++
T Consensus 298 ~~~~~~~~~~~~~~~~~~~--~sp~~dg~-~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~ 374 (706)
T 2z3z_A 298 RTLFVETDKHYVEPLHPLT--FLPGSNNQ-FIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFES 374 (706)
T ss_dssp EEEEEEECSSCCCCCSCCE--ECTTCSSE-EEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEE
T ss_pred eEEEEccCCCeECccCCce--eecCCCCE-EEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEe
Confidence 333322 221 123443 666 555 58889999999999876 56677777778888877 79999988666666
Q ss_pred eCCC----eEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCC----CcEEEEeCCCCc
Q 004214 347 SSDH----TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQD----RTACVWRLPDLV 413 (768)
Q Consensus 347 ~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d----g~i~i~d~~~~~ 413 (768)
+.++ .|..||+..+. . ....+...+.+++|+|+|++++.+..+ +.|++||+.+++
T Consensus 375 ~~~~~~~~~l~~~d~~~~~-----------~-~~l~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 375 TEASPLERHFYCIDIKGGK-----------T-KDLTPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp SSSCTTCBEEEEEETTCCC-----------C-EESCCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred cCCCCceEEEEEEEcCCCC-----------c-eeccCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 6665 56666665321 1 112256678999999999988877544 459999998876
No 141
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.90 E-value=3e-21 Score=199.64 Aligned_cols=294 Identities=11% Similarity=0.131 Sum_probs=189.1
Q ss_pred EEEeecCCCcEEEEECC-CC--EEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCC-CcEEEEECC--CCe--eEEEecCc
Q 004214 2 FALLEGADRKVLVWDVD-GG--FCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDD-ATVRVWDLL--AKK--CVATLDKH 73 (768)
Q Consensus 2 ~latg~~dg~i~vwd~~-~~--~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~d-g~I~iWd~~--~~~--~~~~l~~h 73 (768)
++++++.|+.|.+||+. ++ ..+.. ..|...+.+++|+|+|++ |++++.+ +.|.+|++. +++ .+..+..+
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~spdg~~--l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 83 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQV-VDVPGQVQPMVVSPDKRY--LYVGVRPEFRVLAYRIAPDDGALTFAAESALP 83 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEE-EECSSCCCCEEECTTSSE--EEEEETTTTEEEEEEECTTTCCEEEEEEEECS
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeee-EecCCCCceEEECCCCCE--EEEeecCCCeEEEEEecCCCCceeeccccccC
Confidence 45556889999999995 44 33333 458889999999999987 7777765 999999997 554 44555544
Q ss_pred cceeEEEEEcCCCCEEEEEeC-CCeEEEEECCCC---eeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCc
Q 004214 74 FSRVTSMAITSDGSTLISAGR-DKVVNLWDLRDY---SCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSL 149 (768)
Q Consensus 74 ~~~V~~l~fs~d~~~L~s~~~-dg~i~vWd~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (768)
. .+..++|+|+|++|++++. ++.|.+||+.++ +....+....
T Consensus 84 ~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~--------------------------------- 129 (343)
T 1ri6_A 84 G-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLD--------------------------------- 129 (343)
T ss_dssp S-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCT---------------------------------
T ss_pred C-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCC---------------------------------
Confidence 4 7899999999998877765 788999998422 2221111111
Q ss_pred ceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceee
Q 004214 150 EIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMEL 229 (768)
Q Consensus 150 ~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~ 229 (768)
T Consensus 130 -------------------------------------------------------------------------------- 129 (343)
T 1ri6_A 130 -------------------------------------------------------------------------------- 129 (343)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeeecccCCceeEEEEecCCCCEEEEEe-CCCcEEEEECCC-ceeee----eeeC-CccceEEEeeeeecCCCEEEEE
Q 004214 230 ILSKRLVGYNEEILDLKFLGEEEQYLAVAT-NIEQVQVYDLSS-MSCSY----VLAG-HSEIVLCLDTCALSSGKILIVT 302 (768)
Q Consensus 230 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~~~~i~i~d~~~-~~~~~----~~~~-~~~~v~~l~~~~~~~~~~~l~~ 302 (768)
.+.+++|++ +++++++++ .++.|.+||+.+ +.... .+.. ....+.++. +.+++..++++
T Consensus 130 -----------~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~pdg~~l~~~ 195 (343)
T 1ri6_A 130 -----------GCHSANISP-DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMV--FHPNEQYAYCV 195 (343)
T ss_dssp -----------TBCCCEECT-TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEE--ECTTSSEEEEE
T ss_pred -----------CceEEEECC-CCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEE--ECCCCCEEEEE
Confidence 233344443 333333333 556666666655 33221 1121 223555665 77888875666
Q ss_pred EeCCCeEEEEeCCC--ceE--EEeee----cc--cCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccce
Q 004214 303 GSKDNSVRLWDSES--RCC--VGVGT----GH--MGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKA 372 (768)
Q Consensus 303 ~~~dg~i~iwd~~~--~~~--~~~~~----~~--~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 372 (768)
+..++.|.+|++.. +.. ..... ++ ...+..++|+|+++.+++++..++.|.+|++..... ....
T Consensus 196 ~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~------~~~~ 269 (343)
T 1ri6_A 196 NELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGS------VLSK 269 (343)
T ss_dssp ETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSC------CEEE
T ss_pred eCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCC------ceEE
Confidence 66899999999953 332 22222 11 235678999999886556777899999999973210 1122
Q ss_pred eeEeeccCCCeEEEEEccCCCEEEEEe-CCCcEEEEeC--CCCc--eEEEEeccCCCeEEEEEccCC
Q 004214 373 KAVVAAHGKDINSLAVAPNDSLVCTGS-QDRTACVWRL--PDLV--SVVTFRGHKRGIWSVEFSPVD 434 (768)
Q Consensus 373 ~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~--~~~~--~~~~~~~~~~~v~~v~~s~~~ 434 (768)
......+. .+.+++|+|+|++|++++ .++.|.+|++ .+++ .+..+.. .....+++|.|+.
T Consensus 270 ~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~-g~~p~~i~~~~~~ 334 (343)
T 1ri6_A 270 EGFQPTET-QPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAV-GQGPMWVVVNAHE 334 (343)
T ss_dssp EEEEECSS-SCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEEC-SSSCCEEEEEEEC
T ss_pred eeeecCCC-ccceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEcccccc-CCCCeeEEEEccc
Confidence 22333333 388999999999888887 5799999954 4553 3344443 2456677777754
No 142
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.90 E-value=7.2e-22 Score=203.79 Aligned_cols=267 Identities=12% Similarity=0.071 Sum_probs=206.4
Q ss_pred CEEEEEeCCCcEEEEECCCceeeeeeeCCcc--ceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeec-c---
Q 004214 253 QYLAVATNIEQVQVYDLSSMSCSYVLAGHSE--IVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTG-H--- 326 (768)
Q Consensus 253 ~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~--~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~--- 326 (768)
+++++++.++.|.+||..+++....+..... .+.++. +.++++.+++++..++.|.+||+.+++.+..+.. +
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~--~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~ 79 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPM--VAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEE 79 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEE--ECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceE--EcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccc
Confidence 4788899999999999999988877764331 355665 7788877677778889999999999988776553 2
Q ss_pred -cCcEEEEEEecCCCcEEEEEe------------CCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCC
Q 004214 327 -MGAVGAVAFSKKLQNFLVSGS------------SDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDS 393 (768)
Q Consensus 327 -~~~v~~~~~~~~~~~~l~s~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 393 (768)
...+..++|+|+++ ++++++ .++.|.+||+.... ...... ....+.+++|+|+++
T Consensus 80 ~~~~~~~~~~s~dg~-~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~----------~~~~~~-~~~~~~~~~~s~dg~ 147 (337)
T 1pby_B 80 RVKSLFGAALSPDGK-TLAIYESPVRLELTHFEVQPTRVALYDAETLS----------RRKAFE-APRQITMLAWARDGS 147 (337)
T ss_dssp EEECTTCEEECTTSS-EEEEEEEEEEECSSCEEECCCEEEEEETTTTE----------EEEEEE-CCSSCCCEEECTTSS
T ss_pred ccccccceEECCCCC-EEEEEecccccccccccccCceEEEEECCCCc----------EEEEEe-CCCCcceeEECCCCC
Confidence 22567899999987 455554 57999999987431 222222 245678899999999
Q ss_pred EEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCC------------------------cEEEE
Q 004214 394 LVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDK------------------------TIKIW 449 (768)
Q Consensus 394 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~------------------------~i~iw 449 (768)
+++++ ++.|.+||+.+++....+..+... ..+.|+|++..++.++..+ .|.+|
T Consensus 148 ~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 224 (337)
T 1pby_B 148 KLYGL--GRDLHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTM 224 (337)
T ss_dssp CEEEE--SSSEEEEETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEE
T ss_pred EEEEe--CCeEEEEECCCCcEeeeeeccccC-CCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEE
Confidence 88888 689999999999888777654411 1237899988766554332 46899
Q ss_pred eCCCCcee-EEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCC
Q 004214 450 SISDGSCL-KTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDA 528 (768)
Q Consensus 450 d~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg 528 (768)
|+.+++.. ..+..+...+..++|+|+|++++++ ++.|.+||+.+++.+..+.. ...+.+++|+|+|++|++++.++
T Consensus 225 d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~ 301 (337)
T 1pby_B 225 DLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPL-PHSYYSVNVSTDGSTVWLGGALG 301 (337)
T ss_dssp ETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEEC-SSCCCEEEECTTSCEEEEESBSS
T ss_pred eCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecC-CCceeeEEECCCCCEEEEEcCCC
Confidence 99998774 3344566788899999999999988 69999999999999888863 45678999999999999999999
Q ss_pred cEEEEEcCCHH
Q 004214 529 LVNLWHDSTAA 539 (768)
Q Consensus 529 ~v~vw~~~~~~ 539 (768)
.|.+|+..+++
T Consensus 302 ~i~v~d~~~~~ 312 (337)
T 1pby_B 302 DLAAYDAETLE 312 (337)
T ss_dssp EEEEEETTTCC
T ss_pred cEEEEECcCCc
Confidence 99999987653
No 143
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.90 E-value=1.8e-22 Score=204.07 Aligned_cols=255 Identities=11% Similarity=0.090 Sum_probs=197.6
Q ss_pred EeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCC-ceEEEeeecc-cCcEEEEEE
Q 004214 258 ATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES-RCCVGVGTGH-MGAVGAVAF 335 (768)
Q Consensus 258 ~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~-~~~v~~~~~ 335 (768)
++.++.|++||+.+++.. .+..|...+.++. +.+++.. +++++ ++.|++||+.+ ++.......+ ...+.+++|
T Consensus 18 ~~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~--~spdg~~-l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 92 (297)
T 2ojh_A 18 GSMRSSIEIFNIRTRKMR-VVWQTPELFEAPN--WSPDGKY-LLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGI 92 (297)
T ss_dssp CCCCEEEEEEETTTTEEE-EEEEESSCCEEEE--ECTTSSE-EEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEE
T ss_pred CCcceeEEEEeCCCCcee-eeccCCcceEeeE--ECCCCCE-EEEEc-CCeEEEEeCCCCCCceEeccccccccccceEE
Confidence 346789999999998876 4556888899997 7787776 66665 88999999999 8877776666 467889999
Q ss_pred ecCCCcEEEEEe--CCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEE-EEeCCCcEEEEeCCC-
Q 004214 336 SKKLQNFLVSGS--SDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVC-TGSQDRTACVWRLPD- 411 (768)
Q Consensus 336 ~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~~dg~i~i~d~~~- 411 (768)
+|+++ ++++++ .++...+|.++.... ..... .+...+..++|+|+++.|+ ++..++.+.+|++..
T Consensus 93 spdg~-~l~~~~~~~~~~~~l~~~~~~~~---------~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~ 161 (297)
T 2ojh_A 93 SPDGA-LYAISDKVEFGKSAIYLLPSTGG---------TPRLM-TKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDID 161 (297)
T ss_dssp CTTSS-EEEEEECTTTSSCEEEEEETTCC---------CCEEC-CSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETT
T ss_pred CCCCC-EEEEEEeCCCCcceEEEEECCCC---------ceEEe-ecCCCccceEECCCCCEEEEEECCCCceEEEEEECC
Confidence 99977 677777 335566665532110 11111 2233488999999999887 777899999998632
Q ss_pred CceEEEEeccCCCeEEEEEccCCCEEEEee-CCCcEEEEeCC-CCceeEEeecCCCcEEEEEEEeCCCEEEEEeCC----
Q 004214 412 LVSVVTFRGHKRGIWSVEFSPVDQVVITAS-GDKTIKIWSIS-DGSCLKTFEGHTSSVLRASFLTRGAQIVSCGAD---- 485 (768)
Q Consensus 412 ~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~-~d~~i~iwd~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d---- 485 (768)
......+..+...+.+++|+|+++.|++++ .++.+++|++. .+..+..+..|...+..+.|+|+|++|++++.+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~ 241 (297)
T 2ojh_A 162 SGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVF 241 (297)
T ss_dssp TCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCC
T ss_pred CCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCC
Confidence 234456667888999999999999887766 58999999986 567778888888899999999999999888876
Q ss_pred -------CcEEEEECCCCeE--EEEeccCCCcEEEEEEcCCCCEEEEEeCCC
Q 004214 486 -------GLVKLWTVRTGEC--IATYDKHEDKIWALAVGKKTEMFATGGSDA 528 (768)
Q Consensus 486 -------g~i~iwd~~~~~~--~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg 528 (768)
+.|++||+.+++. +..+.+|...+.+++|+|++++|++++.+.
T Consensus 242 ~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 242 DHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp SCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred cccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 5699999998865 444557888999999999999999887654
No 144
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.90 E-value=4.2e-21 Score=197.55 Aligned_cols=276 Identities=11% Similarity=0.090 Sum_probs=197.8
Q ss_pred EEEeecCCCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCee-EEEecCccceeEEE
Q 004214 2 FALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKC-VATLDKHFSRVTSM 80 (768)
Q Consensus 2 ~latg~~dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~-~~~l~~h~~~V~~l 80 (768)
++++++.++.|.+||..+++.+..+..+...+ +++|+|+|++ +++++..++.|.+||+.+++. ...+..+..+..++
T Consensus 12 ~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~-l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 89 (331)
T 3u4y_A 12 GIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSN-VVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADV 89 (331)
T ss_dssp EEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCE-EEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCE
T ss_pred EEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCE-EEEEeCCCCeEEEEECCCCceeEEecccCCCCccce
Confidence 46788899999999999999988888777777 9999999985 344445588999999999988 77777777766669
Q ss_pred EEcCCCCEEEEEeCCC---eEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEee
Q 004214 81 AITSDGSTLISAGRDK---VVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVG 157 (768)
Q Consensus 81 ~fs~d~~~L~s~~~dg---~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (768)
+|+|+|++|+++..++ .|.+||+.+++.+..++....+..++++|++.. .+++..
T Consensus 90 ~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~----------------------l~~~~~ 147 (331)
T 3u4y_A 90 DITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNG----------------------LILIDR 147 (331)
T ss_dssp EECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSC----------------------EEEEEE
T ss_pred EECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCE----------------------EEEEec
Confidence 9999999999555553 899999999998888777666677777777652 233334
Q ss_pred CCcE-EEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeec
Q 004214 158 ERGI-VRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLV 236 (768)
Q Consensus 158 ~~g~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~ 236 (768)
.++. +.+|++....... ... ....
T Consensus 148 ~~~~~i~~~~~~~~g~~~-----------------------------------------------------~~~--~~~~ 172 (331)
T 3u4y_A 148 SSANTVRRFKIDADGVLF-----------------------------------------------------DTG--QEFI 172 (331)
T ss_dssp TTTTEEEEEEECTTCCEE-----------------------------------------------------EEE--EEEE
T ss_pred CCCceEEEEEECCCCcEe-----------------------------------------------------ecC--Cccc
Confidence 4455 7777765331000 000 0111
Q ss_pred ccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCcee---eeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEe
Q 004214 237 GYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSC---SYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWD 313 (768)
Q Consensus 237 ~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~---~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd 313 (768)
.....+..++|+++...+++++..++.|.+||+.+++. +..+..+ ..+.++. +.++++.++++...++.|.+||
T Consensus 173 ~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~--~spdg~~l~v~~~~~~~i~~~d 249 (331)
T 3u4y_A 173 SGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN-NLPGTIV--VSRDGSTVYVLTESTVDVFNFN 249 (331)
T ss_dssp CSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS-SCCCCEE--ECTTSSEEEEECSSEEEEEEEE
T ss_pred cCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC-CCCceEE--ECCCCCEEEEEEcCCCEEEEEE
Confidence 22334677888764433555555689999999998887 6666654 4445565 7788887566666788999999
Q ss_pred CCCceE--EEeeecc----cC---cEEEEEEecCCCcEEEEEeCCCeEEEEeCCC
Q 004214 314 SESRCC--VGVGTGH----MG---AVGAVAFSKKLQNFLVSGSSDHTIKVWSFDG 359 (768)
Q Consensus 314 ~~~~~~--~~~~~~~----~~---~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 359 (768)
..+++. +..+..+ .. ....++|+|+++.+++++..++.|.+||+..
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~ 304 (331)
T 3u4y_A 250 QLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISG 304 (331)
T ss_dssp TTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTS
T ss_pred CCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecC
Confidence 999877 3333222 22 2356899999886566667788999999874
No 145
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.90 E-value=4.9e-21 Score=198.07 Aligned_cols=297 Identities=12% Similarity=0.141 Sum_probs=194.8
Q ss_pred EEEEEeCCCcEEEEECC-CC--eeEEEecCccceeEEEEEcCCCCEEEEEeCC-CeEEEEECC--CCeeeeeeecceeEe
Q 004214 46 LLFSGSDDATVRVWDLL-AK--KCVATLDKHFSRVTSMAITSDGSTLISAGRD-KVVNLWDLR--DYSCKLTVPTYEMVE 119 (768)
Q Consensus 46 ~l~sg~~dg~I~iWd~~-~~--~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~d-g~i~vWd~~--~~~~~~~~~~~~~v~ 119 (768)
++++++.|+.|++||+. ++ +.+..+ .|...+.+++|+|+|++|++++.+ +.|.+|++. +++....
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~-------- 77 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFA-------- 77 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEE--------
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeE-ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeec--------
Confidence 45666889999999995 34 334443 477789999999999999998886 899999986 3221100
Q ss_pred eEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEc
Q 004214 120 AVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVL 199 (768)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (768)
T Consensus 78 -------------------------------------------------------------------------------- 77 (343)
T 1ri6_A 78 -------------------------------------------------------------------------------- 77 (343)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEE-eCCCcEEEEECC---Cceee
Q 004214 200 PSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVA-TNIEQVQVYDLS---SMSCS 275 (768)
Q Consensus 200 ~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~-~~~~~i~i~d~~---~~~~~ 275 (768)
..... ...+..++|++ ++++++++ ..++.|.+||+. .....
T Consensus 78 ---------------------------------~~~~~-~~~~~~~~~s~-dg~~l~~~~~~~~~i~~~d~~~~~~~~~~ 122 (343)
T 1ri6_A 78 ---------------------------------AESAL-PGSLTHISTDH-QGQFVFVGSYNAGNVSVTRLEDGLPVGVV 122 (343)
T ss_dssp ---------------------------------EEEEC-SSCCSEEEECT-TSSEEEEEETTTTEEEEEEEETTEEEEEE
T ss_pred ---------------------------------ccccc-CCCCcEEEEcC-CCCEEEEEecCCCeEEEEECCCCcccccc
Confidence 00000 11345666664 44555444 457889999983 34444
Q ss_pred eeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCC-ceEEE----eeec-ccCcEEEEEEecCCCcEEEEEeCC
Q 004214 276 YVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES-RCCVG----VGTG-HMGAVGAVAFSKKLQNFLVSGSSD 349 (768)
Q Consensus 276 ~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~----~~~~-~~~~v~~~~~~~~~~~~l~s~~~d 349 (768)
..+..+. .+.++. +.++++.+++++..++.|.+||+.+ ++... .... ....+..++|+|+++.+++++..+
T Consensus 123 ~~~~~~~-~~~~~~--~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~ 199 (343)
T 1ri6_A 123 DVVEGLD-GCHSAN--ISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELN 199 (343)
T ss_dssp EEECCCT-TBCCCE--ECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTT
T ss_pred ccccCCC-CceEEE--ECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCC
Confidence 4444443 466665 7777777444444899999999987 65432 2222 345788999999987555666689
Q ss_pred CeEEEEeCCCCCCCCccccccceeeEee----c--cCCCeEEEEEccCCCEEEEEe-CCCcEEEEeCC----CCceEEEE
Q 004214 350 HTIKVWSFDGLSDDAEQPMNLKAKAVVA----A--HGKDINSLAVAPNDSLVCTGS-QDRTACVWRLP----DLVSVVTF 418 (768)
Q Consensus 350 g~i~iwd~~~~~~~~~~~~~~~~~~~~~----~--~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~~----~~~~~~~~ 418 (768)
+.|.+|++..... ......... . ....+.+++|+|++++|+++. .++.|.+||+. +.+.+..+
T Consensus 200 ~~i~~~~~~~~~g------~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~ 273 (343)
T 1ri6_A 200 SSVDVWELKDPHG------NIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQ 273 (343)
T ss_dssp TEEEEEESSCTTS------CCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEE
T ss_pred CEEEEEEecCCCC------cEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeee
Confidence 9999999964211 011111111 1 123567899999998887554 78999999998 33455555
Q ss_pred eccCCCeEEEEEccCCCEEEEee-CCCcEEEEe--CCCCc--eeEEeecCCCcEEEEEEEeCCC
Q 004214 419 RGHKRGIWSVEFSPVDQVVITAS-GDKTIKIWS--ISDGS--CLKTFEGHTSSVLRASFLTRGA 477 (768)
Q Consensus 419 ~~~~~~v~~v~~s~~~~~l~t~~-~d~~i~iwd--~~~~~--~~~~~~~~~~~v~~~~~s~~~~ 477 (768)
..+.. +.+++|+|++++|++++ .++.|.+|+ ..+++ .+..+... ....+++|.++.+
T Consensus 274 ~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~g-~~p~~i~~~~~~~ 335 (343)
T 1ri6_A 274 PTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVG-QGPMWVVVNAHEG 335 (343)
T ss_dssp ECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEECS-SSCCEEEEEEEC-
T ss_pred cCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEccccccC-CCCeeEEEEcccC
Confidence 55544 88999999999888887 689999995 44554 34444432 3455677777643
No 146
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.89 E-value=1.9e-21 Score=223.11 Aligned_cols=369 Identities=13% Similarity=0.106 Sum_probs=237.3
Q ss_pred EEeecCCCcEEEEECCCCEEEEEEEcCCC---cEEEEEEeeCCCccEEEEEeCC---------CcEEEEECCCCeeEEEe
Q 004214 3 ALLEGADRKVLVWDVDGGFCTHYFKGHKG---VVSSILFHPDTDKSLLFSGSDD---------ATVRVWDLLAKKCVATL 70 (768)
Q Consensus 3 latg~~dg~i~vwd~~~~~~~~~l~gh~~---~V~~l~~spd~~~~~l~sg~~d---------g~I~iWd~~~~~~~~~l 70 (768)
+++ +.||+|++||+.++++...+.+|.. .|.+++|||||++ |++++.+ +.|.+||+.+++. ..+
T Consensus 31 ~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~--l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l 106 (723)
T 1xfd_A 31 IYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREY--ALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSL 106 (723)
T ss_dssp CCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSE--EEEEESCCCCSSSCCCSEEEEEESSSCCC-EEC
T ss_pred EEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCE--EEEEecCccceeecceeeEEEEECCCCce-Eec
Confidence 444 6899999999999998888888776 4999999999998 8887764 7888999998876 334
Q ss_pred c---CccceeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccC
Q 004214 71 D---KHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRR 147 (768)
Q Consensus 71 ~---~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (768)
. +|...+..++|||||++|++++. +.|++||+.+++.......... .
T Consensus 107 ~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~----------~------------------- 156 (723)
T 1xfd_A 107 DPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKE----------G------------------- 156 (723)
T ss_dssp CCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBT----------T-------------------
T ss_pred cCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCC----------C-------------------
Confidence 3 45556899999999999999886 7899999988765433221000 0
Q ss_pred CcceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEec-CeEEEEeeccCcccc
Q 004214 148 SLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTAD-QQLLLYTTVEVPEKK 226 (768)
Q Consensus 148 ~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-g~i~~~~~~~~~~~~ 226 (768)
.+..+-.+ | +. ..........+.|+|++..++.++.+ +.+.+|.+.....
T Consensus 157 ----~~~~g~~~-----~------v~------------~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~-- 207 (723)
T 1xfd_A 157 ----VIYNGLSD-----W------LY------------EEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTG-- 207 (723)
T ss_dssp ----TEEEEECC-----H------HH------------HHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSS--
T ss_pred ----ceECcccc-----e------eE------------EEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCC--
Confidence 00000000 0 00 00001233677889999988877755 4566666542211
Q ss_pred eeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCC------ccceEEEeeeeecCCCEEE
Q 004214 227 MELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGH------SEIVLCLDTCALSSGKILI 300 (768)
Q Consensus 227 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~------~~~v~~l~~~~~~~~~~~l 300 (768)
.....+..+.|.+.... ..+..|++||+.+++....+..+ ...+..+. ++++++. +
T Consensus 208 ----------~~~~~~~~~~~~~~G~~-----~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~--~SpDg~~-l 269 (723)
T 1xfd_A 208 ----------SIYPTVKPYHYPKAGSE-----NPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVK--WATSTKV-A 269 (723)
T ss_dssp ----------SSSCCCEEEECCBTTSC-----CCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEE--ESSSSEE-E
T ss_pred ----------cCCCcceeccCCCCCCC-----CCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEE--EeCCCeE-E
Confidence 12234566666543321 22358999999998865566554 56777776 7777765 5
Q ss_pred EEEeC----CCeEEEEeCCCceEEEeeec-ccCcE----EEEEEecCCCcEEEE-EeCCC------eEEEEeC-CCCCCC
Q 004214 301 VTGSK----DNSVRLWDSESRCCVGVGTG-HMGAV----GAVAFSKKLQNFLVS-GSSDH------TIKVWSF-DGLSDD 363 (768)
Q Consensus 301 ~~~~~----dg~i~iwd~~~~~~~~~~~~-~~~~v----~~~~~~~~~~~~l~s-~~~dg------~i~iwd~-~~~~~~ 363 (768)
++... +..|++||+.++++...+.. +...+ ..++|+|+|+.+++. +..++ .|.+||+ ......
T Consensus 270 ~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~ 349 (723)
T 1xfd_A 270 VTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSND 349 (723)
T ss_dssp EEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSC
T ss_pred EEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCcc
Confidence 55532 35799999999887766544 33333 378999999876665 56777 4566662 322100
Q ss_pred CccccccceeeEeeccCCCeEE-EEEccCCCEEEEEeCC---CcEEEEeCCCCc--eEEEEec---cCCCeEEEEEccCC
Q 004214 364 AEQPMNLKAKAVVAAHGKDINS-LAVAPNDSLVCTGSQD---RTACVWRLPDLV--SVVTFRG---HKRGIWSVEFSPVD 434 (768)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~i~~-~~~s~~~~~l~~~~~d---g~i~i~d~~~~~--~~~~~~~---~~~~v~~v~~s~~~ 434 (768)
....+..+...+.. ++|+|+|+.|+..+.+ +.+++|++.... ....+.. |...+..++|+|+|
T Consensus 350 --------~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg 421 (723)
T 1xfd_A 350 --------NIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSM 421 (723)
T ss_dssp --------CCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTS
T ss_pred --------ceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCC
Confidence 01111122334444 6999999999876655 789999986432 2333443 56778999999999
Q ss_pred CEEEEeeCCC---cEEEEeCCCCceeEEe
Q 004214 435 QVVITASGDK---TIKIWSISDGSCLKTF 460 (768)
Q Consensus 435 ~~l~t~~~d~---~i~iwd~~~~~~~~~~ 460 (768)
++++.....- ...+++..++..+..+
T Consensus 422 ~~l~~~~~~~~~p~~~~~~~~~~~~~~~~ 450 (723)
T 1xfd_A 422 DFFLLKCEGPGVPMVTVHNTTDKKKMFDL 450 (723)
T ss_dssp SEEEEECCSSSSCCEEEEETTTCCEEEEE
T ss_pred CEEEEEccCCCCCeEEEEECCCCCEEEEe
Confidence 9888754422 3445666555554444
No 147
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.89 E-value=3.2e-20 Score=192.82 Aligned_cols=217 Identities=9% Similarity=0.001 Sum_probs=163.4
Q ss_pred EEEEEeCCCcEEEEECCCceeeeeeeCCcc---------ceEEEeeeeecCCCEEEEEE-eCCCeEEEEeCCCceEEEee
Q 004214 254 YLAVATNIEQVQVYDLSSMSCSYVLAGHSE---------IVLCLDTCALSSGKILIVTG-SKDNSVRLWDSESRCCVGVG 323 (768)
Q Consensus 254 ~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~---------~v~~l~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~ 323 (768)
.+++...++.|.+||..+++....+..+.. .+.++. +.++++.+++++ +.++.|.+||..+++....+
T Consensus 103 l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~ 180 (353)
T 3vgz_A 103 LWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELV--ADDATNTVYISGIGKESVIWVVDGGNIKLKTAI 180 (353)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEE--EETTTTEEEEEEESSSCEEEEEETTTTEEEEEE
T ss_pred EEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEE--ECCCCCEEEEEecCCCceEEEEcCCCCceEEEe
Confidence 333444456777777777766665554332 145665 778888755555 35889999999999998888
Q ss_pred ecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEee----ccCCCeEEEEEccCCCEEEEEe
Q 004214 324 TGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVA----AHGKDINSLAVAPNDSLVCTGS 399 (768)
Q Consensus 324 ~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~~~s~~~~~l~~~~ 399 (768)
..+...+.+++|+|+++ .+++++.++.|.+||..... ...... .+...+.+++|+|+++.+++++
T Consensus 181 ~~~~~~~~~~~~s~dg~-~l~~~~~~~~i~~~d~~~~~----------~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 249 (353)
T 3vgz_A 181 QNTGKMSTGLALDSEGK-RLYTTNADGELITIDTADNK----------ILSRKKLLDDGKEHFFINISLDTARQRAFITD 249 (353)
T ss_dssp CCCCTTCCCCEEETTTT-EEEEECTTSEEEEEETTTTE----------EEEEEECCCSSSCCCEEEEEEETTTTEEEEEE
T ss_pred cCCCCccceEEECCCCC-EEEEEcCCCeEEEEECCCCe----------EEEEEEcCCCCCCcccceEEECCCCCEEEEEe
Confidence 76666788999999977 67888889999999987542 222222 2455678899999999777766
Q ss_pred C-CCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEee-CCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCC
Q 004214 400 Q-DRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITAS-GDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGA 477 (768)
Q Consensus 400 ~-dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~-~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~ 477 (768)
. ++.|.+||+.+++.+..+.... ...++|+|+++.+++++ .++.|.+||+.+++.+..+..+ ..+..++|+|+|+
T Consensus 250 ~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~ 326 (353)
T 3vgz_A 250 SKAAEVLVVDTRNGNILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP-THPNSLALSADGK 326 (353)
T ss_dssp SSSSEEEEEETTTCCEEEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC-SEEEEEEECTTSC
T ss_pred CCCCEEEEEECCCCcEEEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC-CCCCeEEEcCCCC
Confidence 5 4899999999999888777543 26799999999665555 6899999999999998888754 4778999999999
Q ss_pred EEEEEeCCC
Q 004214 478 QIVSCGADG 486 (768)
Q Consensus 478 ~l~s~~~dg 486 (768)
+|+++..++
T Consensus 327 ~l~v~~~~~ 335 (353)
T 3vgz_A 327 TLYVSVKQK 335 (353)
T ss_dssp EEEEEEECC
T ss_pred EEEEEEccc
Confidence 887777654
No 148
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.89 E-value=1.4e-21 Score=197.31 Aligned_cols=256 Identities=11% Similarity=0.030 Sum_probs=188.7
Q ss_pred eecCCCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCC-CeeEEEecCc-cceeEEEEE
Q 004214 5 LEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLA-KKCVATLDKH-FSRVTSMAI 82 (768)
Q Consensus 5 tg~~dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~-~~~~~~l~~h-~~~V~~l~f 82 (768)
.++.|+.|.+||+.+++.. .+..|...|.+++|+|+|++ |++++ ++.|.+||+.+ ++....+.+| ...|.+++|
T Consensus 17 ~~~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg~~--l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 92 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMR-VVWQTPELFEAPNWSPDGKY--LLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGI 92 (297)
T ss_dssp -CCCCEEEEEEETTTTEEE-EEEEESSCCEEEEECTTSSE--EEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEE
T ss_pred CCCcceeEEEEeCCCCcee-eeccCCcceEeeEECCCCCE--EEEEc-CCeEEEEeCCCCCCceEeccccccccccceEE
Confidence 3567999999999999855 56679999999999999987 77776 78999999999 8877777666 368999999
Q ss_pred cCCCCEEEEEeC--CCeEEEEEC--CCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeC
Q 004214 83 TSDGSTLISAGR--DKVVNLWDL--RDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGE 158 (768)
Q Consensus 83 s~d~~~L~s~~~--dg~i~vWd~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (768)
+|+|++|++++. ++...+|.+ .+++.
T Consensus 93 spdg~~l~~~~~~~~~~~~l~~~~~~~~~~-------------------------------------------------- 122 (297)
T 2ojh_A 93 SPDGALYAISDKVEFGKSAIYLLPSTGGTP-------------------------------------------------- 122 (297)
T ss_dssp CTTSSEEEEEECTTTSSCEEEEEETTCCCC--------------------------------------------------
T ss_pred CCCCCEEEEEEeCCCCcceEEEEECCCCce--------------------------------------------------
Confidence 999999999983 344444433 21110
Q ss_pred CcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeeccc
Q 004214 159 RGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGY 238 (768)
Q Consensus 159 ~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~ 238 (768)
T Consensus 123 -------------------------------------------------------------------------------- 122 (297)
T 2ojh_A 123 -------------------------------------------------------------------------------- 122 (297)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeC--CC
Q 004214 239 NEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDS--ES 316 (768)
Q Consensus 239 ~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~--~~ 316 (768)
..+..+. .+.++. +.+++..++++++.++.+++|++ .+
T Consensus 123 -------------------------------------~~~~~~~-~~~~~~--~spdg~~l~~~~~~~~~~~l~~~~~~~ 162 (297)
T 2ojh_A 123 -------------------------------------RLMTKNL-PSYWHG--WSPDGKSFTYCGIRDQVFDIYSMDIDS 162 (297)
T ss_dssp -------------------------------------EECCSSS-SEEEEE--ECTTSSEEEEEEEETTEEEEEEEETTT
T ss_pred -------------------------------------EEeecCC-CccceE--ECCCCCEEEEEECCCCceEEEEEECCC
Confidence 0000011 133333 66777775667888898899985 44
Q ss_pred ceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEE
Q 004214 317 RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVC 396 (768)
Q Consensus 317 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 396 (768)
+. ...+..+...+.+++|+|+++.+++++..++.+++|++.... .....+..|...+.+++|+|+|++|+
T Consensus 163 ~~-~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~---------~~~~~~~~~~~~~~~~~~s~dg~~l~ 232 (297)
T 2ojh_A 163 GV-ETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDG---------SSVERITDSAYGDWFPHPSPSGDKVV 232 (297)
T ss_dssp CC-EEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS---------SCEEECCCCSEEEEEEEECTTSSEEE
T ss_pred Cc-ceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCC---------CCcEEEecCCcccCCeEECCCCCEEE
Confidence 43 445667888999999999987545555569999999886321 12333445667789999999999999
Q ss_pred EEeCC-----------CcEEEEeCCCCce--EEEEeccCCCeEEEEEccCCCEEEEeeCCC
Q 004214 397 TGSQD-----------RTACVWRLPDLVS--VVTFRGHKRGIWSVEFSPVDQVVITASGDK 444 (768)
Q Consensus 397 ~~~~d-----------g~i~i~d~~~~~~--~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~ 444 (768)
+++.+ +.|++||+.+++. +..+.+|...+.+++|+|+++.|++++.+.
T Consensus 233 ~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 233 FVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred EEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 88876 5699999988765 444557888999999999999998887653
No 149
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.87 E-value=8.7e-21 Score=211.29 Aligned_cols=182 Identities=10% Similarity=0.070 Sum_probs=138.7
Q ss_pred eecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCC----CeEEEEeCCCCCCCCccc
Q 004214 292 ALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSD----HTIKVWSFDGLSDDAEQP 367 (768)
Q Consensus 292 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~ 367 (768)
+.++++.++++.+.++.+.+||+.+++.......+. .+++|+|+|+ ++++++.+ +.|++||+.++.
T Consensus 117 ~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~-~la~~~~~~~~~~~i~~~d~~~g~------ 186 (582)
T 3o4h_A 117 GVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDIRGD-LIAGLGFFGGGRVSLFTSNLSSGG------ 186 (582)
T ss_dssp EEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEEETT-EEEEEEEEETTEEEEEEEETTTCC------
T ss_pred eCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECCCCC-EEEEEEEcCCCCeEEEEEcCCCCC------
Confidence 444554334444444455588888877655544333 7889999987 67766666 789999987542
Q ss_pred cccceeeEeeccCCCeEEEEEccCCCEEEEEeCCC--cEEEEeCCCCceEEEEeccCCCeEEEE--------EccCCCEE
Q 004214 368 MNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDR--TACVWRLPDLVSVVTFRGHKRGIWSVE--------FSPVDQVV 437 (768)
Q Consensus 368 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~v~~v~--------~s~~~~~l 437 (768)
...+..|...+..++|+|||+.|+++..++ .|++||+.+++.. .+.+|...+..++ |+|||.++
T Consensus 187 -----~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~ 260 (582)
T 3o4h_A 187 -----LRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLA 260 (582)
T ss_dssp -----CEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEE
T ss_pred -----ceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEE
Confidence 223456777889999999999999888888 8999999998887 7777877777777 99999999
Q ss_pred EEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCC---cEEEEECCC
Q 004214 438 ITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADG---LVKLWTVRT 495 (768)
Q Consensus 438 ~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg---~i~iwd~~~ 495 (768)
++++.|+++++|++ |++.. .+.+.+.+++|+ +++++++++.+. .+.+||..+
T Consensus 261 ~~~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 261 VVARREGRSAVFID--GERVE---APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp EEEEETTEEEEEET--TEEEC---CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred EEEEcCCcEEEEEE--CCeec---cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence 99999999999999 76655 345778999999 999998888775 477777653
No 150
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.87 E-value=1.5e-20 Score=215.35 Aligned_cols=187 Identities=9% Similarity=-0.009 Sum_probs=121.8
Q ss_pred eEEEEeCCCceEE---E-----eeecccCcEEEEEEecCCCcEEEEEeCC----CeEEEEe----CCCCCCCCccccccc
Q 004214 308 SVRLWDSESRCCV---G-----VGTGHMGAVGAVAFSKKLQNFLVSGSSD----HTIKVWS----FDGLSDDAEQPMNLK 371 (768)
Q Consensus 308 ~i~iwd~~~~~~~---~-----~~~~~~~~v~~~~~~~~~~~~l~s~~~d----g~i~iwd----~~~~~~~~~~~~~~~ 371 (768)
.|++||+.+++.. . .+.+|...+..++|+|++. ++++.... ..|.+|| ...+.... .
T Consensus 225 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~-~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~-----~- 297 (719)
T 1z68_A 225 RIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDER-VCLQWLKRVQNVSVLSICDFREDWQTWDCPK-----T- 297 (719)
T ss_dssp EEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSE-EEEEEEESSTTEEEEEEEEECSSSSSEECCG-----G-
T ss_pred EEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCe-EEEEEeccccCeEEEEEEcccCCCCCCceEE-----E-
Confidence 7889999987642 2 1336888899999999954 66664332 2477888 54331100 0
Q ss_pred eeeEeeccCCCeE-----EEEEccCCCEEEE--EeCCC--cEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeC
Q 004214 372 AKAVVAAHGKDIN-----SLAVAPNDSLVCT--GSQDR--TACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASG 442 (768)
Q Consensus 372 ~~~~~~~~~~~i~-----~~~~s~~~~~l~~--~~~dg--~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~ 442 (768)
.......|...+. .++|+|||+.++. +..+| .|.+||+.+++ ...+..+...+..+.++ +++.|+..+.
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~ 375 (719)
T 1z68_A 298 QEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLFYSSN 375 (719)
T ss_dssp GEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEEEEES
T ss_pred EecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEEEEEe
Confidence 0000134555565 7899999996654 44555 57777877766 44566566678888877 7777766655
Q ss_pred C-----CcEEEEeCCC--Cc-eeEEee----cCCCcEEEEEEEeCCCEEEEE-eCC--CcEEEEECCCCeEEEEec
Q 004214 443 D-----KTIKIWSISD--GS-CLKTFE----GHTSSVLRASFLTRGAQIVSC-GAD--GLVKLWTVRTGECIATYD 503 (768)
Q Consensus 443 d-----~~i~iwd~~~--~~-~~~~~~----~~~~~v~~~~~s~~~~~l~s~-~~d--g~i~iwd~~~~~~~~~~~ 503 (768)
+ +.+++|.+.. +. ....+. +|...+..+.|+|++++++.. +.. ..+.+||+.+++++..+.
T Consensus 376 ~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~~~~~~ 451 (719)
T 1z68_A 376 EFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQEIKILE 451 (719)
T ss_dssp CGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCCEEEEEE
T ss_pred cCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCCEEEEee
Confidence 4 7888998753 32 123333 266778899999999877643 333 468899998888665543
No 151
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.87 E-value=2.6e-19 Score=185.36 Aligned_cols=265 Identities=12% Similarity=0.105 Sum_probs=181.5
Q ss_pred CCcEEEEEC--CCceeee-eeeCCccceEEEeeeeecCCCEEEEEEeC--CCeEEEEeCCCce--EEEeeecccCcEEEE
Q 004214 261 IEQVQVYDL--SSMSCSY-VLAGHSEIVLCLDTCALSSGKILIVTGSK--DNSVRLWDSESRC--CVGVGTGHMGAVGAV 333 (768)
Q Consensus 261 ~~~i~i~d~--~~~~~~~-~~~~~~~~v~~l~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~--~~~~~~~~~~~v~~~ 333 (768)
++.|.+|++ .++.... ....+...+..++ +.++++ +++++.. ++.|.+|++.++. .+..+..+...+..+
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a--~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~ 91 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLA--LSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYV 91 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEEECSCCCCEE--ECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEE
T ss_pred CCCEEEEEEcCCCCeEEEeeeeeccCCcceEE--EccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEE
Confidence 345666654 4555433 2233444555565 666665 4555543 6899999997765 344445577788899
Q ss_pred EEecCCCcEEEEEe-CCCeEEEEeCCCCCCCCccccccceeeEeec---------cCCCeEEEEEccCCCEEEEEeCCCc
Q 004214 334 AFSKKLQNFLVSGS-SDHTIKVWSFDGLSDDAEQPMNLKAKAVVAA---------HGKDINSLAVAPNDSLVCTGSQDRT 403 (768)
Q Consensus 334 ~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~---------~~~~i~~~~~s~~~~~l~~~~~dg~ 403 (768)
+|+|+++ ++++++ .++.|.+|++..... ......... +...+.+++|+|+|+++++...++.
T Consensus 92 a~spdg~-~l~~~~~~~~~v~v~~~~~~g~-------~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~ 163 (347)
T 3hfq_A 92 AVDEARQ-LVYSANYHKGTAEVMKIAADGA-------LTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDK 163 (347)
T ss_dssp EEETTTT-EEEEEETTTTEEEEEEECTTSC-------EEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTE
T ss_pred EECCCCC-EEEEEeCCCCEEEEEEeCCCCC-------eeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCE
Confidence 9999987 455555 789999999863211 111111111 2235889999999996666667889
Q ss_pred EEEEeCC-CCceEE--EEecc-CCCeEEEEEccCCCEEEE-eeCCCcEEEEeCCC--Cce--eEEeecCC------CcEE
Q 004214 404 ACVWRLP-DLVSVV--TFRGH-KRGIWSVEFSPVDQVVIT-ASGDKTIKIWSISD--GSC--LKTFEGHT------SSVL 468 (768)
Q Consensus 404 i~i~d~~-~~~~~~--~~~~~-~~~v~~v~~s~~~~~l~t-~~~d~~i~iwd~~~--~~~--~~~~~~~~------~~v~ 468 (768)
|.+|++. +++... .+..+ ...+..++|+|+|+++++ +..++.|.+|++.. ++. +..+.... ..+.
T Consensus 164 v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 243 (347)
T 3hfq_A 164 VYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAA 243 (347)
T ss_dssp EEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEE
T ss_pred EEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcce
Confidence 9999998 454322 22222 336788999999996655 56788999999874 443 33333322 4588
Q ss_pred EEEEEeCCCEEE-EEeCCCcEEEEECC---CCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCC-CcEEEEEcC
Q 004214 469 RASFLTRGAQIV-SCGADGLVKLWTVR---TGECIATYDKHEDKIWALAVGKKTEMFATGGSD-ALVNLWHDS 536 (768)
Q Consensus 469 ~~~~s~~~~~l~-s~~~dg~i~iwd~~---~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~d-g~v~vw~~~ 536 (768)
.++|+|+|++|+ +...++.|.+|++. +.+.+..+..+...+.+++|+|+|++|++++.+ +.|.+|++.
T Consensus 244 ~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 244 AIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp EEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred eEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence 999999999884 55568999999997 235666676666778899999999998888764 899999654
No 152
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.86 E-value=7.3e-19 Score=182.02 Aligned_cols=285 Identities=10% Similarity=0.114 Sum_probs=184.0
Q ss_pred cCCCcEEEEEC--CCCEEEE-EEEcCCCcEEEEEEeeCCCccEEEEEe--CCCcEEEEECCCCe--eEEEecCccceeEE
Q 004214 7 GADRKVLVWDV--DGGFCTH-YFKGHKGVVSSILFHPDTDKSLLFSGS--DDATVRVWDLLAKK--CVATLDKHFSRVTS 79 (768)
Q Consensus 7 ~~dg~i~vwd~--~~~~~~~-~l~gh~~~V~~l~~spd~~~~~l~sg~--~dg~I~iWd~~~~~--~~~~l~~h~~~V~~ 79 (768)
+.++.|.+|++ .++.... ....+...+..++|+|||+ +++++. .++.|.+||+.+++ .+..+..+...+..
T Consensus 13 ~~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~--l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~ 90 (347)
T 3hfq_A 13 KTSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC--LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAY 90 (347)
T ss_dssp SSCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE--EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSE
T ss_pred CCCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe--EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEE
Confidence 34567777766 4676544 3455678888999999987 344443 37899999997776 45555667788999
Q ss_pred EEEcCCCCEEEEEe-CCCeEEEEECCC-CeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEee
Q 004214 80 MAITSDGSTLISAG-RDKVVNLWDLRD-YSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVG 157 (768)
Q Consensus 80 l~fs~d~~~L~s~~-~dg~i~vWd~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (768)
++|+|||++|++++ .++.|.+|++.. +... .+. .+. ..+
T Consensus 91 ~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~-~~~------~~~--~~~------------------------------ 131 (347)
T 3hfq_A 91 VAVDEARQLVYSANYHKGTAEVMKIAADGALT-LTD------TVQ--HSG------------------------------ 131 (347)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEECTTSCEE-EEE------EEE--CCC------------------------------
T ss_pred EEECCCCCEEEEEeCCCCEEEEEEeCCCCCee-ecc------eee--cCC------------------------------
Confidence 99999999999888 678999999853 2110 000 000 000
Q ss_pred CCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecc
Q 004214 158 ERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVG 237 (768)
Q Consensus 158 ~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~ 237 (768)
T Consensus 132 -------------------------------------------------------------------------------- 131 (347)
T 3hfq_A 132 -------------------------------------------------------------------------------- 131 (347)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCC-C
Q 004214 238 YNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSE-S 316 (768)
Q Consensus 238 ~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~-~ 316 (768)
. + +. ...+...+.++. +.++++ +++++..++.|.+|++. +
T Consensus 132 ~-~---------p~--------------------------~~~~~~~~~~~~--~spdg~-l~v~~~~~~~v~~~~~~~~ 172 (347)
T 3hfq_A 132 H-G---------PR--------------------------PEQDGSHIHYTD--LTPDNR-LAVIDLGSDKVYVYNVSDA 172 (347)
T ss_dssp C-C---------SS--------------------------TTCSSCCEEEEE--ECTTSC-EEEEETTTTEEEEEEECTT
T ss_pred C-C---------CC--------------------------ccccCCCceEEE--ECCCCc-EEEEeCCCCEEEEEEECCC
Confidence 0 0 00 000112233443 455555 46666666777777776 4
Q ss_pred ceEEE--eeec-ccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccC------CCeEEEE
Q 004214 317 RCCVG--VGTG-HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHG------KDINSLA 387 (768)
Q Consensus 317 ~~~~~--~~~~-~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~------~~i~~~~ 387 (768)
+.... .+.. ....+..++|+|+|+.+++++..++.|.+|++..... ............ ..+..++
T Consensus 173 g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g------~~~~~~~~~~~~~~~~~~~~~~~i~ 246 (347)
T 3hfq_A 173 GQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTG------AFTQLGIVKTIPADYTAHNGAAAIR 246 (347)
T ss_dssp SCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTT------EEEEEEEEESSCTTCCSCCEEEEEE
T ss_pred CcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCC------ceEEeeeeeecCCCCCCCCcceeEE
Confidence 43222 1222 2235678999999886666677889999999874211 111111111111 3488999
Q ss_pred EccCCCEE-EEEeCCCcEEEEeCC---CCceEEEEeccCCCeEEEEEccCCCEEEEeeC-CCcEEEE--eCCCCcee
Q 004214 388 VAPNDSLV-CTGSQDRTACVWRLP---DLVSVVTFRGHKRGIWSVEFSPVDQVVITASG-DKTIKIW--SISDGSCL 457 (768)
Q Consensus 388 ~s~~~~~l-~~~~~dg~i~i~d~~---~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~-d~~i~iw--d~~~~~~~ 457 (768)
|+|+|++| ++...++.|.+|++. ..+.+..+..+...+..++|+|+|++|++++. ++.|.+| |..+|+..
T Consensus 247 ~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 247 LSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp ECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred ECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence 99999977 455568999999997 33556666666777899999999998888775 4899999 55556544
No 153
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.86 E-value=3e-20 Score=206.93 Aligned_cols=270 Identities=11% Similarity=0.051 Sum_probs=200.4
Q ss_pred CCceeEEEEecCCCCEEEEEeC-CCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeC---CCeEEEE--
Q 004214 239 NEEILDLKFLGEEEQYLAVATN-IEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSK---DNSVRLW-- 312 (768)
Q Consensus 239 ~~~i~~~~~~~~~~~~l~~~~~-~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~---dg~i~iw-- 312 (768)
..+|.+++|++ +++.+|.++. +|.+.||++.++........+...+..+. ++++ .++++++. +....+|
T Consensus 21 ~~~~~~~~~~~-DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~--~spd--~~l~~~~~~~g~~~~~l~~~ 95 (582)
T 3o4h_A 21 AVEKYSLQGVV-DGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPH--YGVG--RVILVRDVSKGAEQHALFKV 95 (582)
T ss_dssp HSCEEEEEEEE-TTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEEC--TTCS--EEEEEEECSTTSCCEEEEEE
T ss_pred ccchheeecCC-CCCeEEEEEccCCceeEEEEcCCCcEeeeccccccccccc--CCCC--eEEEEeccCCCCcceEEEEE
Confidence 44688999985 6777777666 99999999977766544444436787775 5544 55776664 4545555
Q ss_pred eC--CCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEcc
Q 004214 313 DS--ESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP 390 (768)
Q Consensus 313 d~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 390 (768)
+. ..... .+... ..+...+|+|+++..+++.+.++.+.+||+.++. ..... .+.. .+++|+|
T Consensus 96 ~~~~~g~~~--~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~----------~~~l~-~~~~--~~~~~sp 159 (582)
T 3o4h_A 96 NTSRPGEEQ--RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGG----------LRELA-RLPG--FGFVSDI 159 (582)
T ss_dssp ETTSTTCCE--ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTE----------EEEEE-EESS--CEEEEEE
T ss_pred eccCCCccc--cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCc----------EEEee-cCCC--ceEEECC
Confidence 44 33322 22222 2344668899887666665555566699987431 22222 2222 7899999
Q ss_pred CCCEEEEEeCC----CcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCC--cEEEEeCCCCceeEEeecCC
Q 004214 391 NDSLVCTGSQD----RTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDK--TIKIWSISDGSCLKTFEGHT 464 (768)
Q Consensus 391 ~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~--~i~iwd~~~~~~~~~~~~~~ 464 (768)
||++|++++.+ +.|++||+.+++.. .+..|...+..++|||||+.|+++..++ .|++||+.++++. .+.+|.
T Consensus 160 DG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~ 237 (582)
T 3o4h_A 160 RGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPS 237 (582)
T ss_dssp ETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSC
T ss_pred CCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCC
Confidence 99999988877 78999999888765 6778888999999999999999888888 8999999999888 777888
Q ss_pred CcEEEEE--------EEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCc---EEEE
Q 004214 465 SSVLRAS--------FLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDAL---VNLW 533 (768)
Q Consensus 465 ~~v~~~~--------~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~---v~vw 533 (768)
..+..+. |+|||..+++++.||.+++|++ |++.. .+.+.+.+++|+ +++++++++.+.. +.+|
T Consensus 238 ~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~ 311 (582)
T 3o4h_A 238 KDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE---APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSL 311 (582)
T ss_dssp SHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC---CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEE
T ss_pred cChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec---cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEE
Confidence 7777777 9999988999999999999999 77665 345789999999 9999998887754 6666
Q ss_pred EcCC
Q 004214 534 HDST 537 (768)
Q Consensus 534 ~~~~ 537 (768)
+..+
T Consensus 312 d~~~ 315 (582)
T 3o4h_A 312 PSGE 315 (582)
T ss_dssp TTCC
T ss_pred cCCC
Confidence 6543
No 154
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.85 E-value=5.9e-19 Score=182.89 Aligned_cols=273 Identities=10% Similarity=0.022 Sum_probs=190.9
Q ss_pred CCCCEEEEEeCCCcEEEEECCCceeeeeeeCCc-cceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeeccc-
Q 004214 250 EEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHS-EIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHM- 327 (768)
Q Consensus 250 ~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~-~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~- 327 (768)
+++.++++++.++.|.+||..+++....+..+. ..+..+. +.++++.+++++..++.|.+||+.+++....+..+.
T Consensus 9 ~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~--~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~ 86 (349)
T 1jmx_B 9 AGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAM--MAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSV 86 (349)
T ss_dssp TTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEE--ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCS
T ss_pred CCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeE--ECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccc
Confidence 467788999999999999999999887776554 1345555 777887766777789999999999998877665332
Q ss_pred -----CcEEEEEEecCCCcEEEEEeCC------------CeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEcc
Q 004214 328 -----GAVGAVAFSKKLQNFLVSGSSD------------HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP 390 (768)
Q Consensus 328 -----~~v~~~~~~~~~~~~l~s~~~d------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 390 (768)
..+..++|+|+++ ++++++.+ +.|.+||+..+.. ...... ..+...+.+++|+|
T Consensus 87 ~~~~~~~~~~~~~spdg~-~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~-------~~~~~~-~~~~~~~~~~~~s~ 157 (349)
T 1jmx_B 87 PGEVGRSMYSFAISPDGK-EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLE-------AKPVRT-FPMPRQVYLMRAAD 157 (349)
T ss_dssp TTEEEECSSCEEECTTSS-EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGG-------BCCSEE-EECCSSCCCEEECT
T ss_pred cccccccccceEECCCCC-EEEEEcccccccccccccCCCeEEEEECCCccc-------cceeee-ccCCCcccceeECC
Confidence 2367899999987 56666644 8999999874311 111111 22344688999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCceEEEEeccCC------------------------CeEEEEEccCCCEEEEeeCC-Cc
Q 004214 391 NDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKR------------------------GIWSVEFSPVDQVVITASGD-KT 445 (768)
Q Consensus 391 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~------------------------~v~~v~~s~~~~~l~t~~~d-~~ 445 (768)
+|+ +++++ +.|.+||+.+++....+..+.. ....+++++++......... ..
T Consensus 158 dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 234 (349)
T 1jmx_B 158 DGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYG 234 (349)
T ss_dssp TSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEE
T ss_pred CCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccccccee
Confidence 999 55554 4499999999988877654320 23456666654211111000 11
Q ss_pred EEEEeCCCCce-eEEeecCCCcEEEEEEEe-CCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEE
Q 004214 446 IKIWSISDGSC-LKTFEGHTSSVLRASFLT-RGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFAT 523 (768)
Q Consensus 446 i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s 523 (768)
+..+|..+++. ...+..+...+..++|+| +|++++++ ++.|.+||+.+++.+..+.. ...+.+++|+|++++|++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~ 311 (349)
T 1jmx_B 235 YLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANL-DHTYYCVAFDKKGDKLYL 311 (349)
T ss_dssp EEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEEC-SSCCCEEEECSSSSCEEE
T ss_pred EEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcC-CCCccceEECCCCCEEEE
Confidence 22244444432 112233566788999999 99999988 88999999999999888863 445778999999999988
Q ss_pred EeCCCcEEEEEcCCHH
Q 004214 524 GGSDALVNLWHDSTAA 539 (768)
Q Consensus 524 ~~~dg~v~vw~~~~~~ 539 (768)
++.++.|.+|+..+.+
T Consensus 312 ~~~~~~v~v~d~~~~~ 327 (349)
T 1jmx_B 312 GGTFNDLAVFNPDTLE 327 (349)
T ss_dssp ESBSSEEEEEETTTTE
T ss_pred ecCCCeEEEEeccccc
Confidence 8889999999987653
No 155
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.85 E-value=2.7e-20 Score=197.55 Aligned_cols=221 Identities=11% Similarity=0.119 Sum_probs=167.5
Q ss_pred CeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCc-----cccccceeeEeeccCC
Q 004214 307 NSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAE-----QPMNLKAKAVVAAHGK 381 (768)
Q Consensus 307 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-----~~~~~~~~~~~~~~~~ 381 (768)
+.+++|+.... .+...+..+++++++. ++++++.++ +++|+......... .............+..
T Consensus 23 ~~vri~~~~~~-------~~~~~~n~lavs~~~~-~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (434)
T 2oit_A 23 KKVRIFDSPEE-------LPKERSSLLAVSNKYG-LVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKF 93 (434)
T ss_dssp CEEECSCCCSS-------CCCSCCBCEEEETTTT-EEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSS
T ss_pred eeEEecCCccc-------cCCCCccEEEEecCCC-EEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCC
Confidence 46777764321 2344678899999866 788888887 88887542211000 0000001111234567
Q ss_pred CeEEEEEccCCCEEE----EEeCCCcEEEEeCCCC--------ce---EEEEeccCCCeEEEEEccC-CCEEEEeeCCCc
Q 004214 382 DINSLAVAPNDSLVC----TGSQDRTACVWRLPDL--------VS---VVTFRGHKRGIWSVEFSPV-DQVVITASGDKT 445 (768)
Q Consensus 382 ~i~~~~~s~~~~~l~----~~~~dg~i~i~d~~~~--------~~---~~~~~~~~~~v~~v~~s~~-~~~l~t~~~d~~ 445 (768)
.|.+++|+|+|++|+ +|+.|+.|++||+.++ +. +..+.+|...|++++|+|+ +.+|++++.||+
T Consensus 94 ~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~ 173 (434)
T 2oit_A 94 PIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGS 173 (434)
T ss_dssp CEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSC
T ss_pred cccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCe
Confidence 899999999999999 7888999999998654 22 4556679999999999998 899999999999
Q ss_pred EEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCC-------CcEEEEEEcCCC
Q 004214 446 IKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHE-------DKIWALAVGKKT 518 (768)
Q Consensus 446 i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-------~~v~~l~~s~~~ 518 (768)
|++||++++..+....+|...|++++|+|+|++|++|+.||.|++||++ ++....+..|. ..|.+++|++++
T Consensus 174 v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~ 252 (434)
T 2oit_A 174 IAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTY 252 (434)
T ss_dssp EEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETT
T ss_pred EEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCc
Confidence 9999999998877778899999999999999999999999999999998 66666664442 389999999998
Q ss_pred CEEEEE-eCCCc------EEEEEcCC
Q 004214 519 EMFATG-GSDAL------VNLWHDST 537 (768)
Q Consensus 519 ~~l~s~-~~dg~------v~vw~~~~ 537 (768)
.++++. ..||. +++|++..
T Consensus 253 ~~l~~~~~~dg~~~~~~~v~i~~l~~ 278 (434)
T 2oit_A 253 VFAIVYAAADGTLETSPDVVMALLPK 278 (434)
T ss_dssp EEEEEEEETTCCSSSCCEEEEEECCC
T ss_pred eEEEEEccCCCccCCCCceEEEEecc
Confidence 887653 34443 88999874
No 156
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.84 E-value=5.2e-18 Score=176.65 Aligned_cols=303 Identities=10% Similarity=0.131 Sum_probs=188.7
Q ss_pred cCCCcEEEEEC--CCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCC----CcEEEEECCC--Ce--eEEEecCccce
Q 004214 7 GADRKVLVWDV--DGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDD----ATVRVWDLLA--KK--CVATLDKHFSR 76 (768)
Q Consensus 7 ~~dg~i~vwd~--~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~d----g~I~iWd~~~--~~--~~~~l~~h~~~ 76 (768)
+.++.|.+|.+ .++........|...+..++|+|||++ |++++.+ +.|.+|++.. ++ .+.....+...
T Consensus 24 ~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~--l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~ 101 (361)
T 3scy_A 24 GNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKF--VYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGAD 101 (361)
T ss_dssp SSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSE--EEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSC
T ss_pred CCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCE--EEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCC
Confidence 45778999976 566644333337888899999999987 7777665 8999998865 43 34444445566
Q ss_pred eEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEE
Q 004214 77 VTSMAITSDGSTLISAG-RDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFIT 155 (768)
Q Consensus 77 V~~l~fs~d~~~L~s~~-~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (768)
+..+++ ++++|++++ .++.|.+|++.....+..+... .. ..+.
T Consensus 102 p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~-----~~--~~g~--------------------------- 145 (361)
T 3scy_A 102 PCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDV-----IE--FKGS--------------------------- 145 (361)
T ss_dssp EEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEE-----EE--CCCC---------------------------
T ss_pred cEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCccccee-----EE--ccCC---------------------------
Confidence 778888 888888776 5789999998643221111000 00 0000
Q ss_pred eeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeee
Q 004214 156 VGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRL 235 (768)
Q Consensus 156 ~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~ 235 (768)
T Consensus 146 -------------------------------------------------------------------------------- 145 (361)
T 3scy_A 146 -------------------------------------------------------------------------------- 145 (361)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCC
Q 004214 236 VGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSE 315 (768)
Q Consensus 236 ~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~ 315 (768)
. +. ....+...+.++. +.++++.+++++..++.|.+|++.
T Consensus 146 ---~----------~~-------------------------~~~~~~~~~~~~~--~spdg~~l~~~~~~~~~v~v~~~~ 185 (361)
T 3scy_A 146 ---G----------PD-------------------------KERQTMPHLHCVR--ITPDGKYLLADDLGTDQIHKFNIN 185 (361)
T ss_dssp ---C----------SC-------------------------TTTCSSCCEEEEE--ECTTSSEEEEEETTTTEEEEEEEC
T ss_pred ---C----------CC-------------------------ccccCCCcceEEE--ECCCCCEEEEEeCCCCEEEEEEEc
Confidence 0 00 0000112233443 556666545555556777777665
Q ss_pred Cce-------E------EEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCC
Q 004214 316 SRC-------C------VGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKD 382 (768)
Q Consensus 316 ~~~-------~------~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (768)
... . ......+......++|+|+++.++++...++.|.+|++..+... ..........+...
T Consensus 186 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~-----~~~~~~~~~~~~~~ 260 (361)
T 3scy_A 186 PNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLD-----EIQTVAADTVNAQG 260 (361)
T ss_dssp TTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEE-----EEEEEESCSSCCCC
T ss_pred CCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceE-----EeEEEecCCCCCCC
Confidence 322 1 11122344567889999998744444447999999998743100 00011111223345
Q ss_pred eEEEEEccCCCEEEEEeCC--CcEEEEeCC--CCc--eEEEEeccCCCeEEEEEccCCCEEEEee-CCCcEEEE--eCCC
Q 004214 383 INSLAVAPNDSLVCTGSQD--RTACVWRLP--DLV--SVVTFRGHKRGIWSVEFSPVDQVVITAS-GDKTIKIW--SISD 453 (768)
Q Consensus 383 i~~~~~s~~~~~l~~~~~d--g~i~i~d~~--~~~--~~~~~~~~~~~v~~v~~s~~~~~l~t~~-~d~~i~iw--d~~~ 453 (768)
+.+++|+|+|++|+++..+ +.|.+|++. +++ .+..+.. ...+.+++|+|+|++|++++ .++.|.+| |..+
T Consensus 261 ~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~ 339 (361)
T 3scy_A 261 SGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQAT 339 (361)
T ss_dssp EEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTT
T ss_pred cccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCC
Confidence 6899999999998777765 899999986 344 4444554 56788999999999888887 67899996 5556
Q ss_pred CceeEEe-ecCCCcEEEEEEE
Q 004214 454 GSCLKTF-EGHTSSVLRASFL 473 (768)
Q Consensus 454 ~~~~~~~-~~~~~~v~~~~~s 473 (768)
++..... ..+...+.|+.|.
T Consensus 340 g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 340 GLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp CCEEECSCCEECSSEEEEEEE
T ss_pred CcEeecceeeeCCCCeEEEEc
Confidence 7655443 2345578888886
No 157
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.84 E-value=2.7e-18 Score=178.79 Aligned_cols=278 Identities=8% Similarity=0.055 Sum_probs=182.7
Q ss_pred CEEEEEe----CCCcEEEEEC--CCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCC----CeEEEEeCCC--ceE-
Q 004214 253 QYLAVAT----NIEQVQVYDL--SSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKD----NSVRLWDSES--RCC- 319 (768)
Q Consensus 253 ~~l~~~~----~~~~i~i~d~--~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~d----g~i~iwd~~~--~~~- 319 (768)
.++++|+ .++.|.+|.+ .+++.......+...+..++ +.++++. |++++.+ +.|.+|++.. +..
T Consensus 14 ~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~--~spdg~~-l~~~~~~~~~~~~v~~~~~~~~~g~~~ 90 (361)
T 3scy_A 14 LTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLI--PSADGKF-VYSVNEFSKDQAAVSAFAFDKEKGTLH 90 (361)
T ss_dssp EEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEE--ECTTSSE-EEEEECCSSTTCEEEEEEEETTTTEEE
T ss_pred eEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEE--ECCCCCE-EEEEEccCCCCCcEEEEEEeCCCCcEE
Confidence 3455554 3467888865 45554332222555555565 6777776 6666664 8999998765 443
Q ss_pred -EEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccc----eeeEeeccCCCeEEEEEccCCCE
Q 004214 320 -VGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLK----AKAVVAAHGKDINSLAVAPNDSL 394 (768)
Q Consensus 320 -~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----~~~~~~~~~~~i~~~~~s~~~~~ 394 (768)
+.....+......+++ +++.++++...++.|.+|++.............. .......+...+.+++|+|+|++
T Consensus 91 ~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~ 168 (361)
T 3scy_A 91 LLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKY 168 (361)
T ss_dssp EEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSE
T ss_pred EeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCE
Confidence 3334445556777777 6564445555789999999974322111000000 00000112334688999999997
Q ss_pred EEEEe-CCCcEEEEeCCCCce------E-------EEEeccCCCeEEEEEccCCCEEEEee-CCCcEEEEeCCCCce--e
Q 004214 395 VCTGS-QDRTACVWRLPDLVS------V-------VTFRGHKRGIWSVEFSPVDQVVITAS-GDKTIKIWSISDGSC--L 457 (768)
Q Consensus 395 l~~~~-~dg~i~i~d~~~~~~------~-------~~~~~~~~~v~~v~~s~~~~~l~t~~-~d~~i~iwd~~~~~~--~ 457 (768)
+++++ .++.|.+|++..... + .....+...+..++|+|+|+++++++ .++.|.+|++.++.. +
T Consensus 169 l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~ 248 (361)
T 3scy_A 169 LLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEI 248 (361)
T ss_dssp EEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEE
T ss_pred EEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEe
Confidence 76655 478999998875431 1 11223455678999999999887777 689999999987754 3
Q ss_pred EEee---cCCCcEEEEEEEeCCCEEEEEeCC--CcEEEEECC--CCe--EEEEeccCCCcEEEEEEcCCCCEEEEEe-CC
Q 004214 458 KTFE---GHTSSVLRASFLTRGAQIVSCGAD--GLVKLWTVR--TGE--CIATYDKHEDKIWALAVGKKTEMFATGG-SD 527 (768)
Q Consensus 458 ~~~~---~~~~~v~~~~~s~~~~~l~s~~~d--g~i~iwd~~--~~~--~~~~~~~~~~~v~~l~~s~~~~~l~s~~-~d 527 (768)
..+. .+......++|+|||++|+++..+ +.|.+|++. +++ .+..+.. ...+.+++|+|+|++|++++ .+
T Consensus 249 ~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~ 327 (361)
T 3scy_A 249 QTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDT 327 (361)
T ss_dssp EEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTT
T ss_pred EEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCC
Confidence 3332 334557899999999999776654 899999985 454 4555554 55678999999999988887 67
Q ss_pred CcEEEEEcC
Q 004214 528 ALVNLWHDS 536 (768)
Q Consensus 528 g~v~vw~~~ 536 (768)
+.|.+|++.
T Consensus 328 ~~v~v~~~d 336 (361)
T 3scy_A 328 NVIQIFERD 336 (361)
T ss_dssp TEEEEEEEC
T ss_pred CCEEEEEEE
Confidence 899998765
No 158
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.84 E-value=1.4e-19 Score=207.25 Aligned_cols=362 Identities=12% Similarity=0.091 Sum_probs=228.6
Q ss_pred ecCCCcEEEEECCCCEEEEEEEcCCC---cEEEEEEeeCCCccEEEEEeC---------CCcEEEEECCCCeeE--EEec
Q 004214 6 EGADRKVLVWDVDGGFCTHYFKGHKG---VVSSILFHPDTDKSLLFSGSD---------DATVRVWDLLAKKCV--ATLD 71 (768)
Q Consensus 6 g~~dg~i~vwd~~~~~~~~~l~gh~~---~V~~l~~spd~~~~~l~sg~~---------dg~I~iWd~~~~~~~--~~l~ 71 (768)
.+.|+.|.+||+.+++....+.+|.. .|.+++|||||++ |++++. ++.|++||+.+++.+ ..+
T Consensus 32 ~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~--la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l- 108 (719)
T 1z68_A 32 QSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQF--VYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL- 108 (719)
T ss_dssp ECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSE--EEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC-
T ss_pred EcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCe--EEEEecCceeEEeecceEEEEEECCCCccccceec-
Confidence 34699999999999998877776655 4999999999998 766655 789999999999873 223
Q ss_pred CccceeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcce
Q 004214 72 KHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEI 151 (768)
Q Consensus 72 ~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (768)
...+..++|||||++|+++. ++.|++||+.+++.......... .
T Consensus 109 --~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~------------~--------------------- 152 (719)
T 1z68_A 109 --PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRE------------N--------------------- 152 (719)
T ss_dssp --CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBT------------T---------------------
T ss_pred --CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCc------------C---------------------
Confidence 24688999999999999886 78999999988875432111000 0
Q ss_pred EEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEec-CeEEEEeeccCcccceeeE
Q 004214 152 HFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTAD-QQLLLYTTVEVPEKKMELI 230 (768)
Q Consensus 152 ~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-g~i~~~~~~~~~~~~~~~~ 230 (768)
.+..+.. ..+.. ...........|+|++..++.++.+ +.+..|.+.....
T Consensus 153 ~v~~g~~-----------~~v~~------------ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~------ 203 (719)
T 1z68_A 153 KIFNGIP-----------DWVYE------------EEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGD------ 203 (719)
T ss_dssp TEEESSC-----------CHHHH------------HHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCS------
T ss_pred CeEcccc-----------cceee------------eecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCC------
Confidence 0000000 00000 0000112356778888888777654 3334443321110
Q ss_pred EEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceee--------eeeeCCccceEEEeeeeecCCCEEEEE
Q 004214 231 LSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCS--------YVLAGHSEIVLCLDTCALSSGKILIVT 302 (768)
Q Consensus 231 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~--------~~~~~~~~~v~~l~~~~~~~~~~~l~~ 302 (768)
.....+..+.|...... .....|++||+.++... ..+.+|...+..+. +++++ .++++
T Consensus 204 ------~~~~~~~~~~yp~~g~~-----~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~SpD~-~~~~~ 269 (719)
T 1z68_A 204 ------EQYPRTINIPYPKAGAK-----NPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLT--WVTDE-RVCLQ 269 (719)
T ss_dssp ------SSSCEEEEEECCBTTSC-----CCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEE--ESSSS-EEEEE
T ss_pred ------CCCccceeecCCCCCCC-----CCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeE--EeCCC-eEEEE
Confidence 11223344444322211 12247899999988753 12346888888887 77774 54666
Q ss_pred EeCC----CeEEEEe----CCCceEEEee----ecccCcEE-----EEEEecCCCcEEE-EEeCCCe--EEEEeCCCCCC
Q 004214 303 GSKD----NSVRLWD----SESRCCVGVG----TGHMGAVG-----AVAFSKKLQNFLV-SGSSDHT--IKVWSFDGLSD 362 (768)
Q Consensus 303 ~~~d----g~i~iwd----~~~~~~~~~~----~~~~~~v~-----~~~~~~~~~~~l~-s~~~dg~--i~iwd~~~~~~ 362 (768)
.... ..|.+|| ..++++.... .+|.+.+. .+.|+|+|+.+++ +...+|. |.+|++....
T Consensus 270 ~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~- 348 (719)
T 1z68_A 270 WLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN- 348 (719)
T ss_dssp EEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-
T ss_pred EeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-
Confidence 4432 2488899 8888776665 46777666 7899999886555 3446664 5555654321
Q ss_pred CCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCC-----CcEEEEeCCC--Cc-eEEEEec----cCCCeEEEEE
Q 004214 363 DAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQD-----RTACVWRLPD--LV-SVVTFRG----HKRGIWSVEF 430 (768)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~i~d~~~--~~-~~~~~~~----~~~~v~~v~~ 430 (768)
...+..+...+..+.++ +++.++..+.+ +..++|.+.. +. ....+.. |...+..+.|
T Consensus 349 ----------~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~ 417 (719)
T 1z68_A 349 ----------AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASF 417 (719)
T ss_dssp ----------CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEE
T ss_pred ----------eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEE
Confidence 12223345567777777 77777776654 7888888753 32 1233332 5567889999
Q ss_pred ccCCCEEEE-eeCC--CcEEEEeCCCCceeEEee
Q 004214 431 SPVDQVVIT-ASGD--KTIKIWSISDGSCLKTFE 461 (768)
Q Consensus 431 s~~~~~l~t-~~~d--~~i~iwd~~~~~~~~~~~ 461 (768)
+|++++++. ++.+ ..+.+||+.+++++..+.
T Consensus 418 s~dg~~l~~~~s~~~~p~~~l~d~~~g~~~~~~~ 451 (719)
T 1z68_A 418 SDYAKYYALVCYGPGIPISTLHDGRTDQEIKILE 451 (719)
T ss_dssp CGGGSSEEEEECCBSSCEEEEECSSSCCEEEEEE
T ss_pred CCCCCEEEEEcCCCCCCeEEEEECCCCCEEEEee
Confidence 999887764 3333 468999998888766654
No 159
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.83 E-value=2.9e-18 Score=177.63 Aligned_cols=292 Identities=10% Similarity=0.036 Sum_probs=186.0
Q ss_pred EEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCcc-ceeEEEEEcCCCCEEEE-EeCCCeEEEEECCCCeeeeee
Q 004214 35 SILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHF-SRVTSMAITSDGSTLIS-AGRDKVVNLWDLRDYSCKLTV 112 (768)
Q Consensus 35 ~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~-~~V~~l~fs~d~~~L~s-~~~dg~i~vWd~~~~~~~~~~ 112 (768)
.+++++++.. +++++.+++|.+||+.+++.+..+..+. ..+..++|+|+|++++. ...++.|.+||+.+++....+
T Consensus 4 g~~~~~~~~~--~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~ 81 (349)
T 1jmx_B 4 GPALKAGHEY--MIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHA 81 (349)
T ss_dssp CCCCCTTCEE--EEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred cccccCCCEE--EEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEE
Confidence 4567776554 8999999999999999999988887554 25889999999997654 456899999999988766554
Q ss_pred ecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccc
Q 004214 113 PTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRG 192 (768)
Q Consensus 113 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (768)
...... + .....
T Consensus 82 ~~~~~~--------~------------------------------------------------------------~~~~~ 93 (349)
T 1jmx_B 82 NLSSVP--------G------------------------------------------------------------EVGRS 93 (349)
T ss_dssp ESCCST--------T------------------------------------------------------------EEEEC
T ss_pred Eccccc--------c------------------------------------------------------------ccccc
Confidence 321100 0 00001
Q ss_pred eeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCc
Q 004214 193 FTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSM 272 (768)
Q Consensus 193 ~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~ 272 (768)
+..+.++|++..++++..+.... ... .+..++.|.+||+.++
T Consensus 94 ~~~~~~spdg~~l~~~~~~~~~~-----------------------------------~~~---~~~~~~~i~~~d~~~~ 135 (349)
T 1jmx_B 94 MYSFAISPDGKEVYATVNPTQRL-----------------------------------NDH---YVVKPPRLEVFSTADG 135 (349)
T ss_dssp SSCEEECTTSSEEEEEEEEEEEC-----------------------------------SSC---EEECCCEEEEEEGGGG
T ss_pred ccceEECCCCCEEEEEccccccc-----------------------------------ccc---cccCCCeEEEEECCCc
Confidence 11222333333333332210000 000 0011367888888774
Q ss_pred eee---eeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccC---------------------
Q 004214 273 SCS---YVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMG--------------------- 328 (768)
Q Consensus 273 ~~~---~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--------------------- 328 (768)
+.. ..+..+ ..+.+++ +.+++. +++ ++ +.|.+||..+++....+..+..
T Consensus 136 ~~~~~~~~~~~~-~~~~~~~--~s~dg~-l~~-~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (349)
T 1jmx_B 136 LEAKPVRTFPMP-RQVYLMR--AADDGS-LYV-AG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRH 208 (349)
T ss_dssp GGBCCSEEEECC-SSCCCEE--ECTTSC-EEE-ES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTC
T ss_pred cccceeeeccCC-Cccccee--ECCCCc-EEE-cc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcce
Confidence 432 223322 3466665 667776 344 43 3499999999888776653320
Q ss_pred ---cEEEEEEecCCCc----------EEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEcc-CCCE
Q 004214 329 ---AVGAVAFSKKLQN----------FLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP-NDSL 394 (768)
Q Consensus 329 ---~v~~~~~~~~~~~----------~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~ 394 (768)
....+++++++.. ++.....++.+++|++ ..+...+.+++++| ++++
T Consensus 209 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~sp~dg~~ 269 (349)
T 1jmx_B 209 EFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEF-------------------ADLTELYFTGLRSPKDPNQ 269 (349)
T ss_dssp EEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEE-------------------EECSSCEEEEEECSSCTTE
T ss_pred eEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEeccc-------------------ccCCCcceeeEecCCCCCE
Confidence 2344556554321 1112223344444433 22456788999999 9999
Q ss_pred EEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecC
Q 004214 395 VCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGH 463 (768)
Q Consensus 395 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~ 463 (768)
++++ ++.|.+||+.+++.+..+.. ...+.+++|+|++++|++++.++.|++||+.+++.+..+..+
T Consensus 270 l~~~--~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 270 IYGV--LNRLAKYDLKQRKLIKAANL-DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp EEEE--ESEEEEEETTTTEEEEEEEC-SSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred EEEE--cCeEEEEECccCeEEEEEcC-CCCccceEECCCCCEEEEecCCCeEEEEeccccceeeeeecC
Confidence 9988 88999999999988887763 345789999999998888888999999999999988887644
No 160
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.83 E-value=6.9e-18 Score=174.59 Aligned_cols=297 Identities=13% Similarity=0.129 Sum_probs=198.7
Q ss_pred CCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEe----------CCCeEEEEECCCCeeeeeeecceeEeeE
Q 004214 52 DDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAG----------RDKVVNLWDLRDYSCKLTVPTYEMVEAV 121 (768)
Q Consensus 52 ~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~----------~dg~i~vWd~~~~~~~~~~~~~~~v~~~ 121 (768)
.|+.|.+||..+++.+.++..+..+ .++|+|||++|+++. .++.|.+||..+++.+.+++....
T Consensus 29 ~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~---- 102 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPK---- 102 (361)
T ss_dssp GGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTT----
T ss_pred ccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcc----
Confidence 4789999999999999998877766 999999999999886 367899999988877666542100
Q ss_pred EecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccC
Q 004214 122 CAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPS 201 (768)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (768)
.
T Consensus 103 ------~------------------------------------------------------------------------- 103 (361)
T 2oiz_A 103 ------R------------------------------------------------------------------------- 103 (361)
T ss_dssp ------B-------------------------------------------------------------------------
T ss_pred ------c-------------------------------------------------------------------------
Confidence 0
Q ss_pred CCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeC--CCcEEEEECCCceeeee-e
Q 004214 202 NQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATN--IEQVQVYDLSSMSCSYV-L 278 (768)
Q Consensus 202 ~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~--~~~i~i~d~~~~~~~~~-~ 278 (768)
.........++++ +++++|+++.. ++.|.+||+.+++.+.. +
T Consensus 104 ----------------------------------~~~g~~p~~i~~s-pdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i 148 (361)
T 2oiz_A 104 ----------------------------------VQGLNYDGLFRQT-TDGKFIVLQNASPATSIGIVDVAKGDYVEDVT 148 (361)
T ss_dssp ----------------------------------CCBCCCGGGEEEC-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEG
T ss_pred ----------------------------------cccCCCcceEEEC-CCCCEEEEECCCCCCeEEEEECCCCcEEEEEe
Confidence 0000011233333 35556655542 57888888888877766 4
Q ss_pred eCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCC-ceEEEe------eecccCcEEEEEEecCCCcEEEEEeCCCe
Q 004214 279 AGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES-RCCVGV------GTGHMGAVGAVAFSKKLQNFLVSGSSDHT 351 (768)
Q Consensus 279 ~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~------~~~~~~~v~~~~~~~~~~~~l~s~~~dg~ 351 (768)
..... ..+. ..+.+...+++.+.||.+.+|+... ++.... +..+..++ .+.+++++. .++..+.++.
T Consensus 149 ~~~~~--~~v~--~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~-~~~~~~~~~~ 222 (361)
T 2oiz_A 149 AAAGC--WSVI--PQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKD-KAHFVSYYGN 222 (361)
T ss_dssp GGTTE--EEEE--ECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSS-EEEEEBTTSE
T ss_pred cCCCc--ceeE--EcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCC-EEEEEeCCCe
Confidence 43221 1122 4565545588889999999998864 544421 22222222 233456655 4556678899
Q ss_pred EEEEeCCCCCCCCccccccceeeEee--ccCCCeEEEEEccCCCEEEEEeC-----------CCcEEEEeCCCCceEEEE
Q 004214 352 IKVWSFDGLSDDAEQPMNLKAKAVVA--AHGKDINSLAVAPNDSLVCTGSQ-----------DRTACVWRLPDLVSVVTF 418 (768)
Q Consensus 352 i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~s~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~ 418 (768)
|.++|+.................... ........++++|+++.++++.. .+.|.+||+.+++.+..+
T Consensus 223 v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i 302 (361)
T 2oiz_A 223 VYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARI 302 (361)
T ss_dssp EEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEE
T ss_pred EEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEE
Confidence 99999864321000000000000000 00111223789999888777643 347999999999999999
Q ss_pred eccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCC--ceeEEeecCCCcEEEEEEEeCCC
Q 004214 419 RGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG--SCLKTFEGHTSSVLRASFLTRGA 477 (768)
Q Consensus 419 ~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~--~~~~~~~~~~~~v~~~~~s~~~~ 477 (768)
..+. +.+++|+|+|++|++++. ++|.+||..++ +.+.++..+......++++|+|+
T Consensus 303 ~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 303 PGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp ECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred ecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 8877 999999999999999887 99999999999 99999877778888999999985
No 161
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.82 E-value=3.3e-19 Score=189.17 Aligned_cols=247 Identities=14% Similarity=0.130 Sum_probs=170.9
Q ss_pred ceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCc-----------eEEE----eeecccCcEEEEEEecCCCcEEE----
Q 004214 284 IVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR-----------CCVG----VGTGHMGAVGAVAFSKKLQNFLV---- 344 (768)
Q Consensus 284 ~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-----------~~~~----~~~~~~~~v~~~~~~~~~~~~l~---- 344 (768)
.+..++ +.+.++. +++++.+| +++|+.... .... ....+...|.+++|+|+++ +|+
T Consensus 38 ~~n~la--vs~~~~~-l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~-~lav~~~ 112 (434)
T 2oit_A 38 RSSLLA--VSNKYGL-VFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNL-TLSACMM 112 (434)
T ss_dssp CCBCEE--EETTTTE-EEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSC-EEEEEEE
T ss_pred CccEEE--EecCCCE-EEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCC-EEEEEEe
Confidence 345554 5566665 88888887 888864211 1111 0123567899999999977 566
Q ss_pred EEeCCCeEEEEeCCCCCCCCccc-cccceeeEeeccCCCeEEEEEccC-CCEEEEEeCCCcEEEEeCCCCceEEEEeccC
Q 004214 345 SGSSDHTIKVWSFDGLSDDAEQP-MNLKAKAVVAAHGKDINSLAVAPN-DSLVCTGSQDRTACVWRLPDLVSVVTFRGHK 422 (768)
Q Consensus 345 s~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 422 (768)
+++.|+.|++||+.......... ..........+|...|.+++|+|+ +.+|++++.||+|++||++++.......+|.
T Consensus 113 sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~ 192 (434)
T 2oit_A 113 SSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPST 192 (434)
T ss_dssp ETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGG
T ss_pred ccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCC
Confidence 78889999999986431000000 011123445678999999999997 8999999999999999999987777777899
Q ss_pred CCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCC-------CcEEEEEEEeCCCEEEEE-eCCC------cE
Q 004214 423 RGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHT-------SSVLRASFLTRGAQIVSC-GADG------LV 488 (768)
Q Consensus 423 ~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~-------~~v~~~~~s~~~~~l~s~-~~dg------~i 488 (768)
..|++++|+|+|++|++|+.||+|++||++ ++....+..|. ..|.++.|++++.++++. ..|| .+
T Consensus 193 ~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v 271 (434)
T 2oit_A 193 VAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDV 271 (434)
T ss_dssp GCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEE
T ss_pred CceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCce
Confidence 999999999999999999999999999998 66666665442 389999999998887553 3343 38
Q ss_pred EEEECCCCe-----EEEEec-------cCCCcEEEEEEcCCCCEEEEEe-CCCcEEEEEcC
Q 004214 489 KLWTVRTGE-----CIATYD-------KHEDKIWALAVGKKTEMFATGG-SDALVNLWHDS 536 (768)
Q Consensus 489 ~iwd~~~~~-----~~~~~~-------~~~~~v~~l~~s~~~~~l~s~~-~dg~v~vw~~~ 536 (768)
++|++.+.+ ....+. +...+-..+..-++.+++++++ ..+.|.|....
T Consensus 272 ~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~ 332 (434)
T 2oit_A 272 VMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQ 332 (434)
T ss_dssp EEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEEC
T ss_pred EEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEec
Confidence 999997642 112221 1112222333336667666555 44556666643
No 162
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.82 E-value=2.9e-18 Score=180.57 Aligned_cols=321 Identities=11% Similarity=0.008 Sum_probs=200.4
Q ss_pred cEEEEECCCCEEEEEEEcCCCcEEE-----EEEeeCCCccEEEEEeC-CC--cEEEEECCCCeeEEEecCccceeEEEEE
Q 004214 11 KVLVWDVDGGFCTHYFKGHKGVVSS-----ILFHPDTDKSLLFSGSD-DA--TVRVWDLLAKKCVATLDKHFSRVTSMAI 82 (768)
Q Consensus 11 ~i~vwd~~~~~~~~~l~gh~~~V~~-----l~~spd~~~~~l~sg~~-dg--~I~iWd~~~~~~~~~l~~h~~~V~~l~f 82 (768)
....+|..+|..+..+..|...... .+|||||++ |+.++. +| .|.+||+.+++......+|...+..++|
T Consensus 11 ~~~~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~--l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~ 88 (388)
T 3pe7_A 11 FDTYQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSK--LLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFL 88 (388)
T ss_dssp CEEEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCE--EEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEE
T ss_pred ceEEecCCCCcceEEecCCcccccchhhcCccCCCCCCE--EEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEE
Confidence 3445688889889999999888777 899999998 776666 66 4888999999988777777777767889
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEE
Q 004214 83 TSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIV 162 (768)
Q Consensus 83 s~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i 162 (768)
+|||++|+.++.++.|.+||+.+++.......+..
T Consensus 89 spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~--------------------------------------------- 123 (388)
T 3pe7_A 89 SPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAE--------------------------------------------- 123 (388)
T ss_dssp CTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTT---------------------------------------------
T ss_pred cCCCCEEEEEeCCCeEEEEECCCCcceeeeechhh---------------------------------------------
Confidence 99999999999999999999988754322211000
Q ss_pred EEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCce
Q 004214 163 RMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEI 242 (768)
Q Consensus 163 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i 242 (768)
.+
T Consensus 124 ------------------------------------------------------------------------------~~ 125 (388)
T 3pe7_A 124 ------------------------------------------------------------------------------WV 125 (388)
T ss_dssp ------------------------------------------------------------------------------EE
T ss_pred ------------------------------------------------------------------------------cc
Confidence 00
Q ss_pred eEEEE-ecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEE
Q 004214 243 LDLKF-LGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVG 321 (768)
Q Consensus 243 ~~~~~-~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 321 (768)
....| ..+++..++.... +-..... +..... +. . .+....++.|.+||+.+++...
T Consensus 126 ~~~~~~~~~dg~~l~~~~~-------~~~~~~~---~~~~~~--------~~----~-~~~~~~~~~l~~~d~~~g~~~~ 182 (388)
T 3pe7_A 126 GYGTWVANSDCTKLVGIEI-------RREDWVP---LTDWKK--------FH----E-FYFTKPCCRLMRVDLKTGESTV 182 (388)
T ss_dssp EEEEEEECTTSSEEEEEEE-------EGGGCCC---CCSHHH--------HH----H-HGGGCCCEEEEEEETTTCCEEE
T ss_pred cccceeECCCCCeeccccc-------cCccccc---ccccch--------hh----h-hhccCCcceEEEEECCCCceEE
Confidence 00000 0122223222100 0000000 000000 00 0 0112234678999999886554
Q ss_pred eeecccCcEEEEEEec-CCCcEEEEEeC------CCeEEEEeCCCCCCCCccccccceeeEeeccC--CCeEEEEEccCC
Q 004214 322 VGTGHMGAVGAVAFSK-KLQNFLVSGSS------DHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHG--KDINSLAVAPND 392 (768)
Q Consensus 322 ~~~~~~~~v~~~~~~~-~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~s~~~ 392 (768)
. ..+...+..+.|+| +++ .++..+. ...|.++|..... ...+..+. ..+...+|+|||
T Consensus 183 l-~~~~~~~~~~~~sp~dg~-~l~~~~~~~~~~~~~~l~~~d~~~~~-----------~~~l~~~~~~~~~~~~~~spdg 249 (388)
T 3pe7_A 183 I-LQENQWLGHPIYRPYDDS-TVAFCHEGPHDLVDARMWLINEDGTN-----------MRKVKTHAEGESCTHEFWVPDG 249 (388)
T ss_dssp E-EEESSCEEEEEEETTEEE-EEEEEECSCTTTSSCSEEEEETTSCC-----------CEESCCCCTTEEEEEEEECTTS
T ss_pred e-ecCCccccccEECCCCCC-EEEEEEecCCCCCcceEEEEeCCCCc-----------eEEeeeCCCCcccccceECCCC
Confidence 4 45667789999999 877 4554444 2367777765431 11111222 247788999999
Q ss_pred CEEEEEeC-CC----cEEEEeCCCCceEE--EEeccCCC---eEEEEEccCCCEEEEe---------eCCCcEEEEeCCC
Q 004214 393 SLVCTGSQ-DR----TACVWRLPDLVSVV--TFRGHKRG---IWSVEFSPVDQVVITA---------SGDKTIKIWSISD 453 (768)
Q Consensus 393 ~~l~~~~~-dg----~i~i~d~~~~~~~~--~~~~~~~~---v~~v~~s~~~~~l~t~---------~~d~~i~iwd~~~ 453 (768)
+.|+..+. ++ .|++||+.+++... .+.++... ...+.|+|+|+.|+.. ..+..|++||+.+
T Consensus 250 ~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~ 329 (388)
T 3pe7_A 250 SALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKN 329 (388)
T ss_dssp SCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTT
T ss_pred CEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccC
Confidence 97766443 22 39999999887433 33321110 1223799999888754 4567899999988
Q ss_pred CceeEEeecCCC-----------cEEEEEEEeCCCEEEEEeC-CCcEEEEEC
Q 004214 454 GSCLKTFEGHTS-----------SVLRASFLTRGAQIVSCGA-DGLVKLWTV 493 (768)
Q Consensus 454 ~~~~~~~~~~~~-----------~v~~~~~s~~~~~l~s~~~-dg~i~iwd~ 493 (768)
++. ..+..|.. .+..++|+|||++|+.++. +|...||.+
T Consensus 330 ~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~ 380 (388)
T 3pe7_A 330 GTQ-HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLA 380 (388)
T ss_dssp TEE-EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred Cce-EEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEE
Confidence 765 44555555 5788999999998876654 666666643
No 163
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.82 E-value=1.8e-17 Score=171.47 Aligned_cols=291 Identities=15% Similarity=0.119 Sum_probs=186.6
Q ss_pred CCCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEE--------eCCCcEEEEECCCCeeEEEecCc------
Q 004214 8 ADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSG--------SDDATVRVWDLLAKKCVATLDKH------ 73 (768)
Q Consensus 8 ~dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg--------~~dg~I~iWd~~~~~~~~~l~~h------ 73 (768)
.|+.|.+||..+++.+..+..+..+ .++|+|||++.+++.. ..+++|.+||..+++.+.++..+
T Consensus 29 ~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~ 106 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQG 106 (361)
T ss_dssp GGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCB
T ss_pred ccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcccccc
Confidence 4789999999999999888877666 8999999998333331 13678999999999998887632
Q ss_pred cceeEEEEEcCCCCEEEEEeC--CCeEEEEECCCCeeeee-eecceeEeeEEecCCCCCccccccccchhhhhcccCCcc
Q 004214 74 FSRVTSMAITSDGSTLISAGR--DKVVNLWDLRDYSCKLT-VPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLE 150 (768)
Q Consensus 74 ~~~V~~l~fs~d~~~L~s~~~--dg~i~vWd~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (768)
......++|+|||++|+++.. ++.|.+||+.+++.+.. ++.... ..+.+.|.+.
T Consensus 107 g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~-~~v~~~p~~~---------------------- 163 (361)
T 2oiz_A 107 LNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGC-WSVIPQPNRP---------------------- 163 (361)
T ss_dssp CCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTE-EEEEECTTSS----------------------
T ss_pred CCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCc-ceeEEcCCCC----------------------
Confidence 345778999999999998864 58999999999887766 543221 1122222221
Q ss_pred eEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeE
Q 004214 151 IHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELI 230 (768)
Q Consensus 151 ~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~ 230 (768)
..+++. +.||.+.++.....
T Consensus 164 ~~~~~~----------------------------------------------------~~dg~~~~v~~~~~-------- 183 (361)
T 2oiz_A 164 RSFMTI----------------------------------------------------CGDGGLLTINLGED-------- 183 (361)
T ss_dssp SEEEEE----------------------------------------------------ETTSSEEEEEECTT--------
T ss_pred eeEEEE----------------------------------------------------CCCCcEEEEEECCC--------
Confidence 022222 33333333322110
Q ss_pred EEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEE
Q 004214 231 LSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVR 310 (768)
Q Consensus 231 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~ 310 (768)
+....... ...+|+. +..++. +. ..+++.. ++..+.++.|.
T Consensus 184 ---------------------g~~~~~~~---~~~~~~~-----------~~~~~~-~~--~~~~g~~-~~~~~~~~~v~ 224 (361)
T 2oiz_A 184 ---------------------GKVASQSR---SKQMFSV-----------KDDPIF-IA--PALDKDK-AHFVSYYGNVY 224 (361)
T ss_dssp ---------------------SSEEEEEE---CCCCSCT-----------TTSCBC-SC--CEECSSE-EEEEBTTSEEE
T ss_pred ---------------------CcEeeecc---ccceEcC-----------CCCceE-EE--ecccCCE-EEEEeCCCeEE
Confidence 00000000 0001111 111111 11 2344444 55556788999
Q ss_pred EEeCCCceE--EEeeec------c----cCcEEEEEEecCCCcEEEEEe----------CCCeEEEEeCCCCCCCCcccc
Q 004214 311 LWDSESRCC--VGVGTG------H----MGAVGAVAFSKKLQNFLVSGS----------SDHTIKVWSFDGLSDDAEQPM 368 (768)
Q Consensus 311 iwd~~~~~~--~~~~~~------~----~~~v~~~~~~~~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~ 368 (768)
++|+..... ...+.. + ......++++|+++.++++.. ..+.|.+||+...
T Consensus 225 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~-------- 296 (361)
T 2oiz_A 225 SADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTK-------- 296 (361)
T ss_dssp EEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTT--------
T ss_pred EEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCC--------
Confidence 999875432 222110 0 011123689999876555544 1358999998743
Q ss_pred ccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC--ceEEEEeccCCCeEEEEEccCCC
Q 004214 369 NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDL--VSVVTFRGHKRGIWSVEFSPVDQ 435 (768)
Q Consensus 369 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~v~~v~~s~~~~ 435 (768)
+.......+. +.+++|+|+|++|++++. +.|.+||..++ +.+..+..+......++++|+|+
T Consensus 297 --~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 297 --QRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp --EEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred --cEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 3444455555 899999999999998887 99999999999 99988877788889999999985
No 164
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.81 E-value=6.6e-18 Score=177.87 Aligned_cols=230 Identities=9% Similarity=-0.028 Sum_probs=156.5
Q ss_pred eecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEE--EecCCCcEEEEE----------------------e
Q 004214 292 ALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVA--FSKKLQNFLVSG----------------------S 347 (768)
Q Consensus 292 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~l~s~----------------------~ 347 (768)
++++++. |+.++.++.|++||+.+++.......+...+.... ++|++. +++.. .
T Consensus 88 ~spdg~~-l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (388)
T 3pe7_A 88 LSPDDDA-LFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCT-KLVGIEIRREDWVPLTDWKKFHEFYFTK 165 (388)
T ss_dssp ECTTSSE-EEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSS-EEEEEEEEGGGCCCCCSHHHHHHHGGGC
T ss_pred EcCCCCE-EEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCC-eeccccccCcccccccccchhhhhhccC
Confidence 5566666 77778888999999999988777776666554444 478876 44432 2
Q ss_pred CCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEcc-CCCEEEEEeCC------CcEEEEeCCCCceEEEEec
Q 004214 348 SDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQD------RTACVWRLPDLVSVVTFRG 420 (768)
Q Consensus 348 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~ 420 (768)
.+..|.+||+..+. ...+..+...+..++|+| +|+.|+....+ ..|.++|...+... .+..
T Consensus 166 ~~~~l~~~d~~~g~-----------~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~ 233 (388)
T 3pe7_A 166 PCCRLMRVDLKTGE-----------STVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR-KVKT 233 (388)
T ss_dssp CCEEEEEEETTTCC-----------EEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE-ESCC
T ss_pred CcceEEEEECCCCc-----------eEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE-Eeee
Confidence 34678999987542 223334566789999999 99999887764 37888887665443 3433
Q ss_pred cC--CCeEEEEEccCCCEEEEeeC-C----CcEEEEeCCCCcee--EEeecCCCc---EEEEEEEeCCCEEEEE------
Q 004214 421 HK--RGIWSVEFSPVDQVVITASG-D----KTIKIWSISDGSCL--KTFEGHTSS---VLRASFLTRGAQIVSC------ 482 (768)
Q Consensus 421 ~~--~~v~~v~~s~~~~~l~t~~~-d----~~i~iwd~~~~~~~--~~~~~~~~~---v~~~~~s~~~~~l~s~------ 482 (768)
+. ..+..++|+|||+.|+..+. + +.|++||+.+++.. ..+.++... .....|+|||++|+..
T Consensus 234 ~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~ 313 (388)
T 3pe7_A 234 HAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSG 313 (388)
T ss_dssp CCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC---------
T ss_pred CCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccc
Confidence 43 35788999999997765433 2 23999999988743 333331110 1113799999988754
Q ss_pred ---eCCCcEEEEECCCCeEEEEeccCCC-----------cEEEEEEcCCCCEEEEEe-CCCcEEEEEcC
Q 004214 483 ---GADGLVKLWTVRTGECIATYDKHED-----------KIWALAVGKKTEMFATGG-SDALVNLWHDS 536 (768)
Q Consensus 483 ---~~dg~i~iwd~~~~~~~~~~~~~~~-----------~v~~l~~s~~~~~l~s~~-~dg~v~vw~~~ 536 (768)
..+..|++||+.+++.. .+..+.. .+.+++|+|||+.|+.++ .+|...||.+.
T Consensus 314 ~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 314 YKIENDPFLYVFNMKNGTQH-RVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp ---CCCCEEEEEETTTTEEE-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred cccCCCCEEEEEeccCCceE-EeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence 44668999999988764 4444554 578889999999888665 57777777654
No 165
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.81 E-value=6.2e-17 Score=185.06 Aligned_cols=373 Identities=12% Similarity=0.088 Sum_probs=230.5
Q ss_pred CcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccce-----eEEEEEcCCCCEEEEEeCC---------C
Q 004214 31 GVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSR-----VTSMAITSDGSTLISAGRD---------K 96 (768)
Q Consensus 31 ~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~-----V~~l~fs~d~~~L~s~~~d---------g 96 (768)
....+++|+|||++ ++++ |++|++||+.++++...+.+|... ...++|||||++|+.++.+ +
T Consensus 17 ~~~~~~~w~~dg~~--~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~ 92 (740)
T 4a5s_A 17 LKLYSLRWISDHEY--LYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTA 92 (740)
T ss_dssp CCCCCEEECSSSEE--EEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEE
T ss_pred ccccccEECCCCcE--EEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccce
Confidence 34568899999865 7776 999999999999998888877643 2448899999999998876 5
Q ss_pred eEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeec
Q 004214 97 VVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQK 176 (768)
Q Consensus 97 ~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~ 176 (768)
.+.+||+.++++.........+....|+|+|.. ++.+ .++.|++|+..++......
T Consensus 93 ~~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~-----------------------la~~-~~~~i~~~~~~~~~~~~lt 148 (740)
T 4a5s_A 93 SYDIYDLNKRQLITEERIPNNTQWVTWSPVGHK-----------------------LAYV-WNNDIYVKIEPNLPSYRIT 148 (740)
T ss_dssp EEEEEETTTTEECCSSCCCTTEEEEEECSSTTC-----------------------EEEE-ETTEEEEESSTTSCCEECC
T ss_pred EEEEEECCCCcEEEcccCCCcceeeEECCCCCE-----------------------EEEE-ECCeEEEEECCCCceEEEc
Confidence 677999999987664444566889999999973 3333 4678999999887433221
Q ss_pred CCceeecccccCc---------ccceeEEEEccCCCceEEEEecCe-EEEEeeccCcccceeeEEEeeecccCCceeEEE
Q 004214 177 SSDVTISFEMDDS---------KRGFTAATVLPSNQGLLCVTADQQ-LLLYTTVEVPEKKMELILSKRLVGYNEEILDLK 246 (768)
Q Consensus 177 ~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~l~~~~~dg~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 246 (768)
..... ....... ........++|++..++....|.. +..|.+....... ++...+..+.
T Consensus 149 ~~g~~-~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~----------~~~~~~~~~~ 217 (740)
T 4a5s_A 149 WTGKE-DIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDES----------LQYPKTVRVP 217 (740)
T ss_dssp SCCBT-TTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTT----------CSSCEEEEEE
T ss_pred CCCCc-cceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCC----------CCCCcceeec
Confidence 11100 0000000 022235789999999988876544 7776654321110 2233445555
Q ss_pred EecCCCCEEEEEeCCCcEEEEECCC---ce--eeeeee------CCccceEEEeeeeecCCCEEEEEEeC---CCeEEEE
Q 004214 247 FLGEEEQYLAVATNIEQVQVYDLSS---MS--CSYVLA------GHSEIVLCLDTCALSSGKILIVTGSK---DNSVRLW 312 (768)
Q Consensus 247 ~~~~~~~~l~~~~~~~~i~i~d~~~---~~--~~~~~~------~~~~~v~~l~~~~~~~~~~~l~~~~~---dg~i~iw 312 (768)
|...... .....|++||+.+ +. ....+. +|...+..+. ++++++.++..... +..|.+|
T Consensus 218 yp~~G~~-----~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--wspdg~~~~~~~~r~~~~~~i~~~ 290 (740)
T 4a5s_A 218 YPKAGAV-----NPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVT--WATQERISLQWLRRIQNYSVMDIC 290 (740)
T ss_dssp CCBTTSC-----CCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEE--EEETTEEEEEEEESSTTEEEEEEE
T ss_pred CCCCcCc-----CCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEE--EeCCCeEEEEEeCCCCCEEEEEEE
Confidence 5443321 1123688999998 73 222333 3777888887 77887753333322 3479999
Q ss_pred eCCCce----EEEe--e--ecccCcEE-----EEEEecCCCcEEEEEe-CCC--eEEEEeCCCCCCCCccccccceeeEe
Q 004214 313 DSESRC----CVGV--G--TGHMGAVG-----AVAFSKKLQNFLVSGS-SDH--TIKVWSFDGLSDDAEQPMNLKAKAVV 376 (768)
Q Consensus 313 d~~~~~----~~~~--~--~~~~~~v~-----~~~~~~~~~~~l~s~~-~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~ 376 (768)
|+.+++ +... + ..|...+. ...|+|+|+.+++..+ .+| .|.+|++.... .. .+
T Consensus 291 d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~----------~~-~l 359 (740)
T 4a5s_A 291 DYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKD----------CT-FI 359 (740)
T ss_dssp EEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSS----------CE-ES
T ss_pred ECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCc----------eE-ec
Confidence 998876 2211 1 34554443 6789999886552444 444 57777776432 11 11
Q ss_pred eccCCCeEEEEEccCCCEEEEEeCC-----Cc--EEEEeCCCCceEEEEec----cCCCeEEEEEccCCCEEEEeeCC--
Q 004214 377 AAHGKDINSLAVAPNDSLVCTGSQD-----RT--ACVWRLPDLVSVVTFRG----HKRGIWSVEFSPVDQVVITASGD-- 443 (768)
Q Consensus 377 ~~~~~~i~~~~~s~~~~~l~~~~~d-----g~--i~i~d~~~~~~~~~~~~----~~~~v~~v~~s~~~~~l~t~~~d-- 443 (768)
......+..+. .++++.|+..+.. +. |+..++..+.....+.. .......+.|+|++++++.....
T Consensus 360 T~g~~~v~~~~-~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~ 438 (740)
T 4a5s_A 360 TKGTWEVIGIE-ALTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPG 438 (740)
T ss_dssp CCSSSCEEEEE-EECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBS
T ss_pred ccCCEEEEEEE-EEeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCC
Confidence 22234455443 2446555544432 33 44445544433323332 23578899999999987765543
Q ss_pred -CcEEEEeCCCCceeEEee
Q 004214 444 -KTIKIWSISDGSCLKTFE 461 (768)
Q Consensus 444 -~~i~iwd~~~~~~~~~~~ 461 (768)
..+.+++..+++.+..+.
T Consensus 439 ~p~~~l~~~~~~~~~~~l~ 457 (740)
T 4a5s_A 439 LPLYTLHSSVNDKGLRVLE 457 (740)
T ss_dssp SCEEEEEETTTTEEEEEEE
T ss_pred CCEEEEEECCCCcEEEEec
Confidence 468889988887666554
No 166
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.80 E-value=1.4e-17 Score=173.28 Aligned_cols=274 Identities=11% Similarity=0.068 Sum_probs=182.5
Q ss_pred EEEEEeCC--CcEEEEEC--CCceeeeeee---CCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCC-CceEEEeeec
Q 004214 254 YLAVATNI--EQVQVYDL--SSMSCSYVLA---GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSE-SRCCVGVGTG 325 (768)
Q Consensus 254 ~l~~~~~~--~~i~i~d~--~~~~~~~~~~---~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~ 325 (768)
.+++|+.. +.|.+|++ .+++....-. .....+..++ +.++++. +++++.+ .|.+|++. +++.......
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a--~spdg~~-l~~~~~~-~v~~~~~~~~g~~~~~~~~ 79 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMT--FDHERKN-IYGAAMK-KWSSFAVKSPTEIVHEASH 79 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEE--ECTTSSE-EEEEEBT-EEEEEEEEETTEEEEEEEE
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEE--ECCCCCE-EEEEccc-eEEEEEECCCCCEEEeeEe
Confidence 34555542 46777654 5555432211 2233455565 6677775 7777777 99999997 7766543321
Q ss_pred c-cCcEEEEEEecCCCc-EEEEEe-------------CCCeEEEEeCCCCCCCCccccccceeeEe-eccCCCeEEEEEc
Q 004214 326 H-MGAVGAVAFSKKLQN-FLVSGS-------------SDHTIKVWSFDGLSDDAEQPMNLKAKAVV-AAHGKDINSLAVA 389 (768)
Q Consensus 326 ~-~~~v~~~~~~~~~~~-~l~s~~-------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~s 389 (768)
. .+...+++|+|+++. +++++. .+|.+.+|++..... ........ ..+...+.+++|+
T Consensus 80 ~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~------~~~~~~~~~~~~~~~~~~~~~s 153 (365)
T 1jof_A 80 PIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGK------LEKNVQNYEYQENTGIHGMVFD 153 (365)
T ss_dssp ECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCC------EEEEEEEEECCTTCCEEEEEEC
T ss_pred ecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCc------CcceEeeEEeCCCCcceEEEEC
Confidence 1 123456889999774 344543 689999999863211 00011111 1245678999999
Q ss_pred cCCCEEEEEeC-CCcEEEEeCC-CCceE--EEEe--ccCCCeEEEEEccCCCEEEEeeC-CCcEEEEeCC--CCcee---
Q 004214 390 PNDSLVCTGSQ-DRTACVWRLP-DLVSV--VTFR--GHKRGIWSVEFSPVDQVVITASG-DKTIKIWSIS--DGSCL--- 457 (768)
Q Consensus 390 ~~~~~l~~~~~-dg~i~i~d~~-~~~~~--~~~~--~~~~~v~~v~~s~~~~~l~t~~~-d~~i~iwd~~--~~~~~--- 457 (768)
|+|++++++.. ++.|++|++. +++.. ..+. .|...+..++|+|+|+++++++. ++.|.+|++. +++..
T Consensus 154 pdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~ 233 (365)
T 1jof_A 154 PTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTH 233 (365)
T ss_dssp TTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEE
T ss_pred CCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEcc
Confidence 99998887764 6799999998 66543 3333 24567899999999999888775 6899999865 56543
Q ss_pred EEee-------cCCC------cEEEEE-EEeCCCEEEEEeCCC------cEEEEECC-CCeEEE---EeccCCCcEEEEE
Q 004214 458 KTFE-------GHTS------SVLRAS-FLTRGAQIVSCGADG------LVKLWTVR-TGECIA---TYDKHEDKIWALA 513 (768)
Q Consensus 458 ~~~~-------~~~~------~v~~~~-~s~~~~~l~s~~~dg------~i~iwd~~-~~~~~~---~~~~~~~~v~~l~ 513 (768)
..+. +|.. .+..++ |+|||++|++++.+. .|.+|++. +++... ....+...+..++
T Consensus 234 ~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a 313 (365)
T 1jof_A 234 HSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNA 313 (365)
T ss_dssp EEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCC
T ss_pred ceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccce
Confidence 2222 1222 588999 999999988776432 89999996 676543 2333455567889
Q ss_pred EcC---CCCEEEEEeCC-CcEEEEEcCC
Q 004214 514 VGK---KTEMFATGGSD-ALVNLWHDST 537 (768)
Q Consensus 514 ~s~---~~~~l~s~~~d-g~v~vw~~~~ 537 (768)
|+| +|++|++++.+ +.|.+|++..
T Consensus 314 ~sp~~~dg~~l~v~~~~~~~v~v~~~~~ 341 (365)
T 1jof_A 314 VSPCPWSDEWMAITDDQEGWLEIYRWKD 341 (365)
T ss_dssp EEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred ecCCCcCCCEEEEEEcCCCeEEEEEEch
Confidence 999 89999998864 8999999765
No 167
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.79 E-value=2.1e-15 Score=163.70 Aligned_cols=338 Identities=11% Similarity=0.068 Sum_probs=226.6
Q ss_pred EEEeecCCCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECC--CCeeEEEecCccceeEE
Q 004214 2 FALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLL--AKKCVATLDKHFSRVTS 79 (768)
Q Consensus 2 ~latg~~dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~--~~~~~~~l~~h~~~V~~ 79 (768)
++++...++.|.++|..+++.+..+.. ...+..++|+|||++ +++++.|+.|.+||+. +++.+.++.... ....
T Consensus 169 ~~V~~~~~~~V~viD~~t~~v~~~i~~-g~~p~~v~~SpDGr~--lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P~~ 244 (567)
T 1qks_A 169 FSVTLRDAGQIALIDGSTYEIKTVLDT-GYAVHISRLSASGRY--LFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EARS 244 (567)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEEEEC-SSCEEEEEECTTSCE--EEEEETTSEEEEEETTSSSCCEEEEEECCS-EEEE
T ss_pred EEEEeCCCCeEEEEECCCCeEEEEEeC-CCCccceEECCCCCE--EEEEcCCCeEEEEECCCCCCcEeEEEecCC-CCce
Confidence 567788899999999999999988874 346779999999998 7777899999999996 888888887544 4679
Q ss_pred EEEc----CCCCEEEEEeC-CCeEEEEECCCCeeeeeeecceeE-eeEEecCCCCCccccccccchhhhhcccCCcceEE
Q 004214 80 MAIT----SDGSTLISAGR-DKVVNLWDLRDYSCKLTVPTYEMV-EAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHF 153 (768)
Q Consensus 80 l~fs----~d~~~L~s~~~-dg~i~vWd~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (768)
++|+ |||++++++.. ++.|.++|..+.+.+..++..... ....+.|
T Consensus 245 ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p---------------------------- 296 (567)
T 1qks_A 245 IETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHP---------------------------- 296 (567)
T ss_dssp EEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEES----------------------------
T ss_pred eEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccC----------------------------
Confidence 9999 69999887765 589999999998877766532110 0000000
Q ss_pred EEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEe
Q 004214 154 ITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSK 233 (768)
Q Consensus 154 ~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~ 233 (768)
T Consensus 297 -------------------------------------------------------------------------------- 296 (567)
T 1qks_A 297 -------------------------------------------------------------------------------- 296 (567)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeee-CCccceEEEeeeeecCCCEEEEEEeCCCeEEEE
Q 004214 234 RLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLA-GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLW 312 (768)
Q Consensus 234 ~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~-~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iw 312 (768)
...+..+..++....+++.....|.|.++|..+........ .......++. +.+++++++++...++.|.++
T Consensus 297 -----~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~--~~pdgr~~~va~~~sn~V~Vi 369 (567)
T 1qks_A 297 -----EPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGG--LDGSHRYFITAANARNKLVVI 369 (567)
T ss_dssp -----CCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEE--ECTTSCEEEEEEGGGTEEEEE
T ss_pred -----CCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCce--ECCCCCEEEEEeCCCCeEEEE
Confidence 00112222222222333334445777777766543221111 1122334444 778888877777788999999
Q ss_pred eCCCceEEEeeec-----ccCcEEEEEEecCCCcEEEEEe-CCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEE
Q 004214 313 DSESRCCVGVGTG-----HMGAVGAVAFSKKLQNFLVSGS-SDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSL 386 (768)
Q Consensus 313 d~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 386 (768)
|+.+++.+..+.. |.+.-.. -++|++..+++++. .++.|.++|....... ....+...........-..+
T Consensus 370 D~~t~kl~~~i~vgg~~Phpg~g~~-~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~---~~~~kvv~~i~~~g~g~~~i 445 (567)
T 1qks_A 370 DTKEGKLVAIEDTGGQTPHPGRGAN-FVHPTFGPVWATSHMGDDSVALIGTDPEGHP---DNAWKILDSFPALGGGSLFI 445 (567)
T ss_dssp ETTTTEEEEEEECSSSSBCCTTCEE-EEETTTEEEEEEEBSSSSEEEEEECCTTTCT---TTBTSEEEEEECSCSCCCCE
T ss_pred ECCCCcEEEEEeccCcCCCCcccee-eECCCCCcEEEeCCCCCCeEEEecCCCCCCc---cccCEEEEEEecCCCCCEEE
Confidence 9999988766543 3322222 25787665556554 5689999998753211 11233444444443333557
Q ss_pred EEccCCCEEEEEeC-------CCcEEEEeCCCC-----ce-EEEEec--------cCCCeEEEEEccCCCEEEEee----
Q 004214 387 AVAPNDSLVCTGSQ-------DRTACVWRLPDL-----VS-VVTFRG--------HKRGIWSVEFSPVDQVVITAS---- 441 (768)
Q Consensus 387 ~~s~~~~~l~~~~~-------dg~i~i~d~~~~-----~~-~~~~~~--------~~~~v~~v~~s~~~~~l~t~~---- 441 (768)
..+|+++++.+... ...|.++|+.+. .. ...+.. ....+..+.|+|+|+.+..+.
T Consensus 446 ~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~ 525 (567)
T 1qks_A 446 KTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGK 525 (567)
T ss_dssp ECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCT
T ss_pred EeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCC
Confidence 88999999998763 359999999876 21 233321 245788999999999877763
Q ss_pred -CCCcEEEEeCCCCceeEEeec
Q 004214 442 -GDKTIKIWSISDGSCLKTFEG 462 (768)
Q Consensus 442 -~d~~i~iwd~~~~~~~~~~~~ 462 (768)
.++.|.|+|..+++.+.++..
T Consensus 526 ~~~~~i~v~D~~t~~~~~~i~~ 547 (567)
T 1qks_A 526 DQESALVVVDDKTLELKHVIKD 547 (567)
T ss_dssp TSCCEEEEEETTTTEEEEEECC
T ss_pred CCCCcEEEEECCCceEEEEeCC
Confidence 379999999999999888874
No 168
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.78 E-value=1.9e-15 Score=164.06 Aligned_cols=332 Identities=14% Similarity=0.116 Sum_probs=221.8
Q ss_pred EeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEEECC--CCeeeeeeecc
Q 004214 38 FHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLR--DYSCKLTVPTY 115 (768)
Q Consensus 38 ~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~--~~~~~~~~~~~ 115 (768)
+..|....++++...+++|.+||..+++.+.++.... .+..+.|||||+++++++.|+.|.+||+. +++.+.+++..
T Consensus 161 ~~~d~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~-~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G 239 (567)
T 1qks_A 161 NDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG 239 (567)
T ss_dssp SCCCGGGEEEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC
T ss_pred cccCCCceEEEEeCCCCeEEEEECCCCeEEEEEeCCC-CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecC
Confidence 3344344567888889999999999999999887443 46799999999999999999999999995 76666555543
Q ss_pred eeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeE
Q 004214 116 EMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTA 195 (768)
Q Consensus 116 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (768)
.....+.+++-
T Consensus 240 ~~P~~ia~s~~--------------------------------------------------------------------- 250 (567)
T 1qks_A 240 SEARSIETSKM--------------------------------------------------------------------- 250 (567)
T ss_dssp SEEEEEEECCS---------------------------------------------------------------------
T ss_pred CCCceeEEccc---------------------------------------------------------------------
Confidence 33344444410
Q ss_pred EEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEe-CCCcEEEEECCCcee
Q 004214 196 ATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVAT-NIEQVQVYDLSSMSC 274 (768)
Q Consensus 196 ~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~~~~i~i~d~~~~~~ 274 (768)
.++++++++++. .++.+.++|..+.+.
T Consensus 251 ----------------------------------------------------~~pDGk~l~v~n~~~~~v~ViD~~t~~~ 278 (567)
T 1qks_A 251 ----------------------------------------------------EGWEDKYAIAGAYWPPQYVIMDGETLEP 278 (567)
T ss_dssp ----------------------------------------------------TTCTTTEEEEEEEETTEEEEEETTTCCE
T ss_pred ----------------------------------------------------cCCCCCEEEEEEccCCeEEEEECCCCcE
Confidence 002333333322 235566666655555
Q ss_pred eeeeeCC----------cc-ceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeee-cccCcEEEEEEecCCCcE
Q 004214 275 SYVLAGH----------SE-IVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGT-GHMGAVGAVAFSKKLQNF 342 (768)
Q Consensus 275 ~~~~~~~----------~~-~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~ 342 (768)
+..+... .. .+..+. .++.+..+++....+|.|.++|..+...+.... ........+.|+|+++.+
T Consensus 279 ~~~i~~~~~~~~~~~~~p~~rva~i~--~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~ 356 (567)
T 1qks_A 279 KKIQSTRGMTYDEQEYHPEPRVAAIL--ASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYF 356 (567)
T ss_dssp EEEEECCEECTTTCCEESCCCEEEEE--ECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEE
T ss_pred EEEEeccccccccccccCCCceEEEE--EcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEE
Confidence 5444321 11 344443 455566667777778999999988754322211 233456788999998866
Q ss_pred EEEEeCCCeEEEEeCCCCCCCCccccccceeeEe-----eccCCCeEEEEEccCCC-EEEEEe-CCCcEEEEeCCC----
Q 004214 343 LVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVV-----AAHGKDINSLAVAPNDS-LVCTGS-QDRTACVWRLPD---- 411 (768)
Q Consensus 343 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~~~~~s~~~~-~l~~~~-~dg~i~i~d~~~---- 411 (768)
+++...++.|.++|+.... ..... ..|...-..+ ++|++. ..+++. .++.|.++|..+
T Consensus 357 ~va~~~sn~V~ViD~~t~k----------l~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~ 425 (567)
T 1qks_A 357 ITAANARNKLVVIDTKEGK----------LVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHP 425 (567)
T ss_dssp EEEEGGGTEEEEEETTTTE----------EEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCT
T ss_pred EEEeCCCCeEEEEECCCCc----------EEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCc
Confidence 6777788999999998542 11111 1233222222 578744 444443 468999999987
Q ss_pred ---CceEEEEeccCCCeEEEEEccCCCEEEEeeC-------CCcEEEEeCCCC-----c-eeEEee--------cCCCcE
Q 004214 412 ---LVSVVTFRGHKRGIWSVEFSPVDQVVITASG-------DKTIKIWSISDG-----S-CLKTFE--------GHTSSV 467 (768)
Q Consensus 412 ---~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~-------d~~i~iwd~~~~-----~-~~~~~~--------~~~~~v 467 (768)
.+.+.++......-..+.++|+++++.+... ..+|.++|+.+. . ....+. .....+
T Consensus 426 ~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 505 (567)
T 1qks_A 426 DNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRV 505 (567)
T ss_dssp TTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEE
T ss_pred cccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcce
Confidence 6788888765544455788999999988663 359999999876 2 223332 123578
Q ss_pred EEEEEEeCCCEEEEEe-----CCCcEEEEECCCCeEEEEecc
Q 004214 468 LRASFLTRGAQIVSCG-----ADGLVKLWTVRTGECIATYDK 504 (768)
Q Consensus 468 ~~~~~s~~~~~l~s~~-----~dg~i~iwd~~~~~~~~~~~~ 504 (768)
..+.|+++|+++..+. .++.|.|+|.++++.+.++..
T Consensus 506 ~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~ 547 (567)
T 1qks_A 506 VQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKD 547 (567)
T ss_dssp EEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECC
T ss_pred EeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeCC
Confidence 8999999999887663 378999999999999988874
No 169
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.78 E-value=6.7e-18 Score=178.35 Aligned_cols=320 Identities=12% Similarity=0.012 Sum_probs=197.0
Q ss_pred EEEEECCCCEEEEEEEcCCCc-----EEEEEEeeCCCccEEEEEeC---CCcEEEEECCCCeeEEEecCccceeEEEEEc
Q 004214 12 VLVWDVDGGFCTHYFKGHKGV-----VSSILFHPDTDKSLLFSGSD---DATVRVWDLLAKKCVATLDKHFSRVTSMAIT 83 (768)
Q Consensus 12 i~vwd~~~~~~~~~l~gh~~~-----V~~l~~spd~~~~~l~sg~~---dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs 83 (768)
...+|..++..+..+..+... +.+++|||||++ |+.... +..|.+||+.+++......++......+.|+
T Consensus 12 ~~~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~--l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~s 89 (396)
T 3c5m_A 12 ETFVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKK--LLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFIS 89 (396)
T ss_dssp EEEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCE--EEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEEC
T ss_pred heeecCCCCcceEEEecCCCCccceeeecCcCCCCCCE--EEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceEC
Confidence 345688899888888776554 778999999987 555533 2468899998887655444333333448899
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEE
Q 004214 84 SDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVR 163 (768)
Q Consensus 84 ~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~ 163 (768)
|||++|+.++.++.|.+||+.+++.......... +.+
T Consensus 90 pdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~-----~~~-------------------------------------- 126 (396)
T 3c5m_A 90 TDERAFFYVKNELNLMKVDLETLEEQVIYTVDEE-----WKG-------------------------------------- 126 (396)
T ss_dssp TTSSEEEEEETTTEEEEEETTTCCEEEEEECCTT-----EEE--------------------------------------
T ss_pred CCCCEEEEEEcCCcEEEEECCCCCcEEEEecccc-----cCC--------------------------------------
Confidence 9999999999999999999987653322211000 000
Q ss_pred EEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCcee
Q 004214 164 MWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEIL 243 (768)
Q Consensus 164 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 243 (768)
T Consensus 127 -------------------------------------------------------------------------------- 126 (396)
T 3c5m_A 127 -------------------------------------------------------------------------------- 126 (396)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEE-----eCCCeEEEEeCCCce
Q 004214 244 DLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTG-----SKDNSVRLWDSESRC 318 (768)
Q Consensus 244 ~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~-----~~dg~i~iwd~~~~~ 318 (768)
++..++....++...+|.. ... +.+++.. ++.+ ..+..|.+||+.+++
T Consensus 127 -------~g~~l~~~~~~~~~~~~~~-----------------~~~--~spdg~~-~~~~~~~~~~~~~~l~~~d~~~g~ 179 (396)
T 3c5m_A 127 -------YGTWVANSDCTKLVGIEIL-----------------KRD--WQPLTSW-EKFAEFYHTNPTCRLIKVDIETGE 179 (396)
T ss_dssp -------EEEEEECTTSSEEEEEEEE-----------------GGG--CCCCCSH-HHHHHHHHTCCCEEEEEEETTTCC
T ss_pred -------CCCEEEeccCCcccccccc-----------------ccc--cCCCCcc-eeeeeeccCCCcceEEEEECCCCc
Confidence 0001111111111111110 001 3344443 2222 345678889988877
Q ss_pred EEEeeecccCcEEEEEEec-CCCcEEEEEeCC------CeEEEEeCCCCCCCCccccccceeeEeecc-CCCeEEEEEcc
Q 004214 319 CVGVGTGHMGAVGAVAFSK-KLQNFLVSGSSD------HTIKVWSFDGLSDDAEQPMNLKAKAVVAAH-GKDINSLAVAP 390 (768)
Q Consensus 319 ~~~~~~~~~~~v~~~~~~~-~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~s~ 390 (768)
..... .+...+..+.|+| ++. .++..+.+ ..|.+|++.... ........ ...+..++|+|
T Consensus 180 ~~~~~-~~~~~~~~~~~sp~dg~-~l~~~~~~~~~~~~~~l~~~d~~~~~----------~~~l~~~~~~~~~~~~~~sp 247 (396)
T 3c5m_A 180 LEVIH-QDTAWLGHPIYRPFDDS-TVGFCHEGPHDLVDARMWLVNEDGSN----------VRKIKEHAEGESCTHEFWIP 247 (396)
T ss_dssp EEEEE-EESSCEEEEEEETTEEE-EEEEEECSCSSSCSCCCEEEETTSCC----------CEESSCCCTTEEEEEEEECT
T ss_pred EEeec-cCCcccccceECCCCCC-EEEEEecCCCCCCCceEEEEECCCCc----------eeEeeccCCCccccceEECC
Confidence 65544 4667789999999 655 34444433 357888875431 11111111 23577899999
Q ss_pred CCCEEEEEeCC-----CcEEEEeCCCCceEEEEeccCCCeEEEEEcc-CCCEEEEee----------------CCCcEEE
Q 004214 391 NDSLVCTGSQD-----RTACVWRLPDLVSVVTFRGHKRGIWSVEFSP-VDQVVITAS----------------GDKTIKI 448 (768)
Q Consensus 391 ~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~t~~----------------~d~~i~i 448 (768)
+|+.|+.++.+ +.|++||+.+++....... . ... +.|+| +|+++++++ .++.|++
T Consensus 248 dg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~-~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~ 324 (396)
T 3c5m_A 248 DGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVM-P-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYV 324 (396)
T ss_dssp TSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEEC-C-SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEE
T ss_pred CCCEEEEEecCCCCccceEEEEECCCCCeEEeeeC-C-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEE
Confidence 99988777544 4499999988765443221 1 233 89999 999888764 3478999
Q ss_pred EeCCCCceeEEeecCCC-----------cEEEEEEEeCCCEEEEEeC-CCc--EEEEECCCCeEE
Q 004214 449 WSISDGSCLKTFEGHTS-----------SVLRASFLTRGAQIVSCGA-DGL--VKLWTVRTGECI 499 (768)
Q Consensus 449 wd~~~~~~~~~~~~~~~-----------~v~~~~~s~~~~~l~s~~~-dg~--i~iwd~~~~~~~ 499 (768)
||+.+++.. .+..+.. .+..+.|+|+|++|+.++. ++. |.++++.+++..
T Consensus 325 ~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~~~ 388 (396)
T 3c5m_A 325 LNTKAKSAQ-KLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESYKH 388 (396)
T ss_dssp EETTTTBCC-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTCC-
T ss_pred EecccCceE-EccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEcccccc
Confidence 999887753 4444544 2566889999998877765 454 444455555443
No 170
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.77 E-value=2e-17 Score=174.63 Aligned_cols=248 Identities=9% Similarity=-0.018 Sum_probs=156.3
Q ss_pred CCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCc
Q 004214 250 EEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGA 329 (768)
Q Consensus 250 ~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 329 (768)
++++.|+.++.++.|++||+.+++.......+.. +.+++.. ++..+.++...+|.
T Consensus 90 pdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~--------~~~~g~~-l~~~~~~~~~~~~~---------------- 144 (396)
T 3c5m_A 90 TDERAFFYVKNELNLMKVDLETLEEQVIYTVDEE--------WKGYGTW-VANSDCTKLVGIEI---------------- 144 (396)
T ss_dssp TTSSEEEEEETTTEEEEEETTTCCEEEEEECCTT--------EEEEEEE-EECTTSSEEEEEEE----------------
T ss_pred CCCCEEEEEEcCCcEEEEECCCCCcEEEEecccc--------cCCCCCE-EEeccCCccccccc----------------
Confidence 4566677777767788888877765544443333 1222322 44444443333332
Q ss_pred EEEEEEecCCCcEEEEE----eCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEcc-CCCEEEEEeCC---
Q 004214 330 VGAVAFSKKLQNFLVSG----SSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQD--- 401 (768)
Q Consensus 330 v~~~~~~~~~~~~l~s~----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~d--- 401 (768)
..+.++|+++.+++.. ..+..|.+||+..+. . .....+...+..+.|+| +++.|+..+.+
T Consensus 145 -~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~----------~-~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~ 212 (396)
T 3c5m_A 145 -LKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGE----------L-EVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHD 212 (396)
T ss_dssp -EGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCC----------E-EEEEEESSCEEEEEEETTEEEEEEEEECSCSS
T ss_pred -cccccCCCCcceeeeeeccCCCcceEEEEECCCCc----------E-EeeccCCcccccceECCCCCCEEEEEecCCCC
Confidence 1234678876432222 456789999987532 1 12224667789999999 78877776654
Q ss_pred ---CcEEEEeCCCCceEEEEecc--CCCeEEEEEccCCCEEEEeeCC-----CcEEEEeCCCCceeEEeecCCCcEEEEE
Q 004214 402 ---RTACVWRLPDLVSVVTFRGH--KRGIWSVEFSPVDQVVITASGD-----KTIKIWSISDGSCLKTFEGHTSSVLRAS 471 (768)
Q Consensus 402 ---g~i~i~d~~~~~~~~~~~~~--~~~v~~v~~s~~~~~l~t~~~d-----~~i~iwd~~~~~~~~~~~~~~~~v~~~~ 471 (768)
..|.+||+..++... +..+ ...+..++|+|+|+.|+.++.+ +.|++||+.+++...... ... .. +.
T Consensus 213 ~~~~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~~-~~-~~ 288 (396)
T 3c5m_A 213 LVDARMWLVNEDGSNVRK-IKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMV-MPP-CS-HL 288 (396)
T ss_dssp SCSCCCEEEETTSCCCEE-SSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE-CCS-EE-EE
T ss_pred CCCceEEEEECCCCceeE-eeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeee-CCC-CC-CC
Confidence 358889987655333 3223 2357889999999987776543 459999998887544332 112 23 89
Q ss_pred EEe-CCCEEEEEe----------------CCCcEEEEECCCCeEEEEeccCCC-----------cEEEEEEcCCCCEEEE
Q 004214 472 FLT-RGAQIVSCG----------------ADGLVKLWTVRTGECIATYDKHED-----------KIWALAVGKKTEMFAT 523 (768)
Q Consensus 472 ~s~-~~~~l~s~~----------------~dg~i~iwd~~~~~~~~~~~~~~~-----------~v~~l~~s~~~~~l~s 523 (768)
|+| +|+++++++ .++.|++||+.+++.. .+..+.. .+..++|+|+|+.|+.
T Consensus 289 ~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~ 367 (396)
T 3c5m_A 289 MSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ-KLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLF 367 (396)
T ss_dssp EECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEE
T ss_pred ccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE-EccCCCCccccccccccCCCCCceEccCCCeEEE
Confidence 999 999888765 3468999999888753 3433443 2566789999998887
Q ss_pred EeC-CCcEEEEE--cCCHH
Q 004214 524 GGS-DALVNLWH--DSTAA 539 (768)
Q Consensus 524 ~~~-dg~v~vw~--~~~~~ 539 (768)
++. ++...+|. +.++.
T Consensus 368 ~s~~~~~~~l~~~~~~~~~ 386 (396)
T 3c5m_A 368 TSDFEGVPAIYIADVPESY 386 (396)
T ss_dssp EECTTSSCEEEEEECCTTC
T ss_pred EecCCCCceEEEEEEcccc
Confidence 764 55555554 44443
No 171
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.76 E-value=7.3e-16 Score=176.23 Aligned_cols=356 Identities=10% Similarity=0.058 Sum_probs=212.9
Q ss_pred eeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccee----E--eeEEecCCCCCccccccccchhhhhcccCCc
Q 004214 76 RVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEM----V--EAVCAIPPGSAFDSFLSSYNQQTIKKKRRSL 149 (768)
Q Consensus 76 ~V~~l~fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~----v--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (768)
...+++|+|||++++++ |+.|++||+.++++...+..+.. + ..+.++|++.
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~--------------------- 74 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQ--------------------- 74 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSS---------------------
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCC---------------------
Confidence 46689999999988886 89999999999987766554331 1 2256677765
Q ss_pred ceEEEEeeCC---------cEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeec
Q 004214 150 EIHFITVGER---------GIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTV 220 (768)
Q Consensus 150 ~~~~~~~~~~---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~ 220 (768)
.++.++.+ +.+.+||+.++...
T Consensus 75 --~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~----------------------------------------------- 105 (740)
T 4a5s_A 75 --FILLEYNYVKQWRHSYTASYDIYDLNKRQLI----------------------------------------------- 105 (740)
T ss_dssp --EEEEEEEEEECSSSCEEEEEEEEETTTTEEC-----------------------------------------------
T ss_pred --EEEEEECCeeeEEEccceEEEEEECCCCcEE-----------------------------------------------
Confidence 33333332 45556666665321
Q ss_pred cCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeee-eCCccce--------------
Q 004214 221 EVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVL-AGHSEIV-------------- 285 (768)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~-~~~~~~v-------------- 285 (768)
.+..+...+...+|+| +++.+|.+. ++.|++|+..++...+.. .++...+
T Consensus 106 -------------~l~~~~~~~~~~~~SP-dG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~ 170 (740)
T 4a5s_A 106 -------------TEERIPNNTQWVTWSP-VGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVF 170 (740)
T ss_dssp -------------CSSCCCTTEEEEEECS-STTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTS
T ss_pred -------------EcccCCCcceeeEECC-CCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhc
Confidence 1223344566666664 555556554 477888888776654322 2222222
Q ss_pred ---EEEeeeeecCCCEEEEEEe-CCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCC--
Q 004214 286 ---LCLDTCALSSGKILIVTGS-KDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDG-- 359 (768)
Q Consensus 286 ---~~l~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-- 359 (768)
..+. ++|+++. |+.++ .++.+.+|++...... ..+...+..+.+.+.|.. .....|.+||+..
T Consensus 171 ~~~~~~~--wSpDg~~-la~~~~d~~~v~~~~~~~~~~~---~~~~~~~~~~~yp~~G~~-----~~~~~l~v~d~~~~~ 239 (740)
T 4a5s_A 171 SAYSALW--WSPNGTF-LAYAQFNDTEVPLIEYSFYSDE---SLQYPKTVRVPYPKAGAV-----NPTVKFFVVNTDSLS 239 (740)
T ss_dssp SSSBCEE--ECTTSSE-EEEEEEECTTCCEEEEEECCST---TCSSCEEEEEECCBTTSC-----CCEEEEEEEETTSCC
T ss_pred CCCcceE--ECCCCCE-EEEEEEcccCCceEEEEeecCC---CCCCCcceeecCCCCcCc-----CCeeEEEEEECCCCC
Confidence 1243 7788877 55554 4555888875311000 024456677777776642 1223688999986
Q ss_pred -CCCCCccccccceeeEe-----eccCCCeEEEEEccCCCEEEEEeC----CCcEEEEeCCCCc----e--EEEE--ecc
Q 004214 360 -LSDDAEQPMNLKAKAVV-----AAHGKDINSLAVAPNDSLVCTGSQ----DRTACVWRLPDLV----S--VVTF--RGH 421 (768)
Q Consensus 360 -~~~~~~~~~~~~~~~~~-----~~~~~~i~~~~~s~~~~~l~~~~~----dg~i~i~d~~~~~----~--~~~~--~~~ 421 (768)
+... ...... ..|...+..++|+|||+.++.... +..|.+||+.+++ + +..+ .+|
T Consensus 240 ~~~~~-------~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~ 312 (740)
T 4a5s_A 240 SVTNA-------TSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMST 312 (740)
T ss_dssp SSSCC-------CEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECS
T ss_pred CCCcc-------eEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccC
Confidence 3110 111111 136677899999999997766543 2369999998876 1 1122 445
Q ss_pred CCCeE-----EEEEccCCCEEE-EeeC-C--CcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCC-----C-
Q 004214 422 KRGIW-----SVEFSPVDQVVI-TASG-D--KTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGAD-----G- 486 (768)
Q Consensus 422 ~~~v~-----~v~~s~~~~~l~-t~~~-d--~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d-----g- 486 (768)
...|. ...|+|||+.++ ..+. + ..|++||+..+.+. .+......+..+.. ++++.|+..+.. +
T Consensus 313 ~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~-~lT~g~~~v~~~~~-~d~~~i~f~~~~~~~~~~~ 390 (740)
T 4a5s_A 313 TGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCT-FITKGTWEVIGIEA-LTSDYLYYISNEYKGMPGG 390 (740)
T ss_dssp SSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCE-ESCCSSSCEEEEEE-ECSSEEEEEESCGGGCTTC
T ss_pred CceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceE-ecccCCEEEEEEEE-EeCCEEEEEEecCCCCCce
Confidence 55554 789999999877 5553 3 46888998766554 44434556665543 556665544432 3
Q ss_pred -cEEEEECCCCeEEEEecc----CCCcEEEEEEcCCCCEEEEEeCC---CcEEEEEcCCH
Q 004214 487 -LVKLWTVRTGECIATYDK----HEDKIWALAVGKKTEMFATGGSD---ALVNLWHDSTA 538 (768)
Q Consensus 487 -~i~iwd~~~~~~~~~~~~----~~~~v~~l~~s~~~~~l~s~~~d---g~v~vw~~~~~ 538 (768)
.|+..++..+.....+.. ....+....|||++++++..... ..+.+++..++
T Consensus 391 ~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~ 450 (740)
T 4a5s_A 391 RNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVND 450 (740)
T ss_dssp BEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTT
T ss_pred eEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCC
Confidence 344445544443323331 23568889999999987755433 35677776544
No 172
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.75 E-value=9.3e-16 Score=159.53 Aligned_cols=243 Identities=11% Similarity=0.043 Sum_probs=166.4
Q ss_pred CceeEEEEecCCCCEEEEEeCCCcEEEEECC-Cceeeeeee--CCccceEEEeeeeecCCCE-EEEEEe-----------
Q 004214 240 EEILDLKFLGEEEQYLAVATNIEQVQVYDLS-SMSCSYVLA--GHSEIVLCLDTCALSSGKI-LIVTGS----------- 304 (768)
Q Consensus 240 ~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~-~~~~~~~~~--~~~~~v~~l~~~~~~~~~~-~l~~~~----------- 304 (768)
..+..++|++ +++++++++.+ .|.+|++. +++...... .+. .+.++. +.++++. +++++.
T Consensus 40 ~~~~~~a~sp-dg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g-~~~~~~--~spdg~~l~~~~~~~~~~~~~~~~~ 114 (365)
T 1jof_A 40 EPISWMTFDH-ERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGG-HPRAND--ADTNTRAIFLLAAKQPPYAVYANPF 114 (365)
T ss_dssp CCCSEEEECT-TSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCS-SGGGGC--TTSCCEEEEEEECSSTTCCEEEEEE
T ss_pred CCCcEEEECC-CCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCC-CCccEE--ECCCCCEEEEEEecCCcceecccee
Confidence 4577888875 66778888776 99999987 776543322 111 223343 6666664 344542
Q ss_pred --CCCeEEEEeCC-CceEEEeee----cccCcEEEEEEecCCCcEEEEEe-CCCeEEEEeCC-CCCCCCccccccceeeE
Q 004214 305 --KDNSVRLWDSE-SRCCVGVGT----GHMGAVGAVAFSKKLQNFLVSGS-SDHTIKVWSFD-GLSDDAEQPMNLKAKAV 375 (768)
Q Consensus 305 --~dg~i~iwd~~-~~~~~~~~~----~~~~~v~~~~~~~~~~~~l~s~~-~dg~i~iwd~~-~~~~~~~~~~~~~~~~~ 375 (768)
.+|.+.+|++. .++....+. .+...+.+++|+|+|+. ++++. .++.|.+|++. .+. ......
T Consensus 115 ~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~-l~~~~~~~~~v~~~~~~~~g~--------~~~~~~ 185 (365)
T 1jof_A 115 YKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETY-LYSADLTANKLWTHRKLASGE--------VELVGS 185 (365)
T ss_dssp SSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSE-EEEEETTTTEEEEEEECTTSC--------EEEEEE
T ss_pred ecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCE-EEEEcCCCCEEEEEEECCCCC--------EEEeee
Confidence 68999999997 465544333 24567999999999874 55544 57899999987 321 111112
Q ss_pred ee--ccCCCeEEEEEccCCCEEEEEeC-CCcEEEEeCC--CCceE---EEEec-------cCC------CeEEEE-EccC
Q 004214 376 VA--AHGKDINSLAVAPNDSLVCTGSQ-DRTACVWRLP--DLVSV---VTFRG-------HKR------GIWSVE-FSPV 433 (768)
Q Consensus 376 ~~--~~~~~i~~~~~s~~~~~l~~~~~-dg~i~i~d~~--~~~~~---~~~~~-------~~~------~v~~v~-~s~~ 433 (768)
.. .|...+..++|+|+|+++++++. ++.|.+|++. +++.. ..+.. |.. .+..++ |+|+
T Consensus 186 ~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spd 265 (365)
T 1jof_A 186 VDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFS 265 (365)
T ss_dssp EECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTT
T ss_pred EecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCC
Confidence 22 24567899999999999888775 6899999765 45542 12221 222 488999 9999
Q ss_pred CCEEEEeeCCC------cEEEEeCC-CCceeE---EeecCCCcEEEEEEEe---CCCEEEEEeCC-CcEEEEECCCC
Q 004214 434 DQVVITASGDK------TIKIWSIS-DGSCLK---TFEGHTSSVLRASFLT---RGAQIVSCGAD-GLVKLWTVRTG 496 (768)
Q Consensus 434 ~~~l~t~~~d~------~i~iwd~~-~~~~~~---~~~~~~~~v~~~~~s~---~~~~l~s~~~d-g~i~iwd~~~~ 496 (768)
|++|+++..+. +|.+|++. +++... ....+...+..++|+| +|++|++++.+ +.|.+|++...
T Consensus 266 G~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 266 GKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp SSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 99888776432 89999996 566543 2334555567789999 89999998874 89999998765
No 173
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.75 E-value=1.1e-15 Score=156.22 Aligned_cols=229 Identities=10% Similarity=0.107 Sum_probs=171.4
Q ss_pred CeEEEEeCCCceEEEeee-cccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEE
Q 004214 307 NSVRLWDSESRCCVGVGT-GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINS 385 (768)
Q Consensus 307 g~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 385 (768)
+.|.+||..+++.+..+. ++......++++|++. ++++...++.|+.|+......................+-..+..
T Consensus 69 ~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~-l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ 147 (329)
T 3fvz_A 69 DTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGN-YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTD 147 (329)
T ss_dssp CCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSC-EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEE
T ss_pred CcEEEEECCCCeEEeccCCCccCCceEEEECCCCC-EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcE
Confidence 579999999888776654 4556789999999977 78888889999999976431000000000000000233456889
Q ss_pred EEEcc-CCCEEEEEe-CCCcEEEEeCCCCceEEEEeccC----------CCeEEEEEccC-CCEEEEeeCCCcEEEEeCC
Q 004214 386 LAVAP-NDSLVCTGS-QDRTACVWRLPDLVSVVTFRGHK----------RGIWSVEFSPV-DQVVITASGDKTIKIWSIS 452 (768)
Q Consensus 386 ~~~s~-~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~----------~~v~~v~~s~~-~~~l~t~~~d~~i~iwd~~ 452 (768)
++++| ++.++++.+ .++.|++|+ .++..+..+.... .....++++|+ +.++++...++.|++||..
T Consensus 148 ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~ 226 (329)
T 3fvz_A 148 VAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTD 226 (329)
T ss_dssp EEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred EEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECC
Confidence 99999 788888876 689999999 5677776664322 34889999998 7888888889999999998
Q ss_pred CCceeEEee--cCCCcEEEEEEEe------CCCEEEEEeCCCcEEEEECCCCeEEEEec---cCCCcEEEEEEcCCCCEE
Q 004214 453 DGSCLKTFE--GHTSSVLRASFLT------RGAQIVSCGADGLVKLWTVRTGECIATYD---KHEDKIWALAVGKKTEMF 521 (768)
Q Consensus 453 ~~~~~~~~~--~~~~~v~~~~~s~------~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~l~~s~~~~~l 521 (768)
+|+.+..+. .+...+..++|+| +|+..++...+..|++|+..+++.+..+. .+...+.+++++|+|..+
T Consensus 227 ~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~ly 306 (329)
T 3fvz_A 227 TKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVY 306 (329)
T ss_dssp TCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEE
T ss_pred CCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEE
Confidence 899998884 4566788999998 33333333345589999999999999883 567779999999999888
Q ss_pred EEEeCCCcEEEEEcCC
Q 004214 522 ATGGSDALVNLWHDST 537 (768)
Q Consensus 522 ~s~~~dg~v~vw~~~~ 537 (768)
++...++.|++|++..
T Consensus 307 vad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 307 IGDAHTNTVWKFTLTE 322 (329)
T ss_dssp EEESSSCCEEEEEEEE
T ss_pred EEECCCCEEEEEeCCc
Confidence 8999999999999753
No 174
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.74 E-value=4.2e-15 Score=148.89 Aligned_cols=238 Identities=12% Similarity=0.188 Sum_probs=175.9
Q ss_pred CCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeee------cccCcEEEEEEe-cCCCcEEEEEeC-CCe
Q 004214 280 GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGT------GHMGAVGAVAFS-KKLQNFLVSGSS-DHT 351 (768)
Q Consensus 280 ~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------~~~~~v~~~~~~-~~~~~~l~s~~~-dg~ 351 (768)
++...+.+++ +.+++. ++++...++.|.+||.. +..+..+. ++...+..+++. ++ ..++++... ++.
T Consensus 27 g~~~~p~~v~--~~~~g~-l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~-g~l~v~~~~~~~~ 101 (286)
T 1q7f_A 27 GQFTEPSGVA--VNAQND-IIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNS-GDIIVTERSPTHQ 101 (286)
T ss_dssp TCBSCEEEEE--ECTTCC-EEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTT-TEEEEEECGGGCE
T ss_pred CccCCCceEE--ECCCCC-EEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCC-CeEEEEcCCCCCE
Confidence 3445567775 556655 47777889999999987 54555443 244578899995 55 445555533 899
Q ss_pred EEEEeCCCCCCCCccccccceeeEe-eccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEe--ccCCCeEEE
Q 004214 352 IKVWSFDGLSDDAEQPMNLKAKAVV-AAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFR--GHKRGIWSV 428 (768)
Q Consensus 352 i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~v~~v 428 (768)
|.+|+.... ..... ..+...+.+++++|+|+++++...++.|.+||. +++.+..+. .+...+..+
T Consensus 102 i~~~d~~g~-----------~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~p~~i 169 (286)
T 1q7f_A 102 IQIYNQYGQ-----------FVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGV 169 (286)
T ss_dssp EEEECTTSC-----------EEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEE
T ss_pred EEEECCCCc-----------EEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcC-CCCEEEEeCCCCccCCcEEE
Confidence 999994321 11111 223456899999999998888778899999996 455555554 345578999
Q ss_pred EEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecC--CCcEEEEEEEeCCCEEEEEeCCC-cEEEEECCCCeEEEEeccC
Q 004214 429 EFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGH--TSSVLRASFLTRGAQIVSCGADG-LVKLWTVRTGECIATYDKH 505 (768)
Q Consensus 429 ~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~ 505 (768)
+++|+|+++++...++.|++||. +++.+..+..+ ...+..++++++|+++++...++ .|.+|+. +++.+..+..+
T Consensus 170 ~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~ 247 (286)
T 1q7f_A 170 VVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESK 247 (286)
T ss_dssp EECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEES
T ss_pred EECCCCCEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEccc
Confidence 99999998888888899999997 56677777543 36789999999999888888776 9999995 67777777654
Q ss_pred CC--cEEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 004214 506 ED--KIWALAVGKKTEMFATGGSDALVNLWHDST 537 (768)
Q Consensus 506 ~~--~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~ 537 (768)
.. .+.+++++|+|+++++ +.|+.|++|+...
T Consensus 248 ~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 248 VKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp SCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred CCCCcceeEEECCCCcEEEE-CCCCeEEEEEccc
Confidence 33 4789999999987777 6799999999754
No 175
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.73 E-value=4.6e-16 Score=176.18 Aligned_cols=295 Identities=11% Similarity=0.038 Sum_probs=194.4
Q ss_pred eecccCCceeEEEEecCCCCEEEEE--eCCCcEEEEECCCceeeeeeeCCccceE---------EEeeeeecCCCE-EEE
Q 004214 234 RLVGYNEEILDLKFLGEEEQYLAVA--TNIEQVQVYDLSSMSCSYVLAGHSEIVL---------CLDTCALSSGKI-LIV 301 (768)
Q Consensus 234 ~~~~~~~~i~~~~~~~~~~~~l~~~--~~~~~i~i~d~~~~~~~~~~~~~~~~v~---------~l~~~~~~~~~~-~l~ 301 (768)
.+.++...+..+++++ +.-+++.. ..++...||....+.....+..+...+. ...+..+|+++. +++
T Consensus 18 ~~~~~~~~~~~~~~s~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~ 96 (662)
T 3azo_A 18 LVASRSGRPACVGAVG-DEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVF 96 (662)
T ss_dssp HHHHTCSCCEEEEEET-TEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEE
T ss_pred HHhhcCCccceeEEcC-CeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEE
Confidence 3456777888898884 33344444 3477899998654555556666654444 332111366776 454
Q ss_pred EEeCCCeEEEEeCC--C-ceEEEeeec-----ccCcEEEEEEecCCCcEEEEEeCC----------CeEEEEeCCCCCCC
Q 004214 302 TGSKDNSVRLWDSE--S-RCCVGVGTG-----HMGAVGAVAFSKKLQNFLVSGSSD----------HTIKVWSFDGLSDD 363 (768)
Q Consensus 302 ~~~~dg~i~iwd~~--~-~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~s~~~d----------g~i~iwd~~~~~~~ 363 (768)
+...+..|.+|++. . +.. ..+.. |...+..++|+|+|+ .|++++.+ ..|.+||+......
T Consensus 97 ~~~~~~~l~~~~~~~~g~~~~-~~l~~~~~~~~~~~~~~~~~spDg~-~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 174 (662)
T 3azo_A 97 THFGDQRLYAFEPDAPGGAVP-RPLTPVSAVGGGLRWADPVLLPERG-EVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAA 174 (662)
T ss_dssp EBTTTCCEEEECTTSTTCCCC-EECSCCCCSTTCEEEEEEEEETTTT-EEEEEEEEECSSSTTCEEEEEEEEETTSTTTT
T ss_pred EECCCCeEEEEcCCCCCCCCC-EeccCCccCCCCccccCcEECCCCC-EEEEEEecccCCCCCCceeEEEEEECCCCccc
Confidence 44446778888876 3 443 33344 667889999999987 56666665 57999998751000
Q ss_pred CccccccceeeEee-ccCCCeEEEEEccCCCEEEEEeCC--------CcEEEEeCC-CC---ceEEEEeccCCCeEEEEE
Q 004214 364 AEQPMNLKAKAVVA-AHGKDINSLAVAPNDSLVCTGSQD--------RTACVWRLP-DL---VSVVTFRGHKRGIWSVEF 430 (768)
Q Consensus 364 ~~~~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~d--------g~i~i~d~~-~~---~~~~~~~~~~~~v~~v~~ 430 (768)
. .. ....+. .+...+..++|||||+.|+.++.+ ..|++||+. ++ +......+|...+..++|
T Consensus 175 ~----~~-~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~ 249 (662)
T 3azo_A 175 D----RS-AVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEW 249 (662)
T ss_dssp C----GG-GSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEE
T ss_pred c----CC-ceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEE
Confidence 0 00 111222 344567889999999999988755 379999998 56 444444556788999999
Q ss_pred ccCCCEEEEeeCCC--cEEEEeCCCCceeEEeecCCCc--------EEEEEEEeCCCEEEEEeCCCcEEEE--ECCCCeE
Q 004214 431 SPVDQVVITASGDK--TIKIWSISDGSCLKTFEGHTSS--------VLRASFLTRGAQIVSCGADGLVKLW--TVRTGEC 498 (768)
Q Consensus 431 s~~~~~l~t~~~d~--~i~iwd~~~~~~~~~~~~~~~~--------v~~~~~s~~~~~l~s~~~dg~i~iw--d~~~~~~ 498 (768)
+|||++++++..++ .|.+||+.+++......++... +..++|+|+++++++++. +.++|| |+.+++
T Consensus 250 spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~- 327 (662)
T 3azo_A 250 APDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE- 327 (662)
T ss_dssp CTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-
T ss_pred CCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-
Confidence 99999888888888 6777777677655444433322 567899999999999998 999999 555555
Q ss_pred EEEeccCCCcEEEE-EEcCCCCEEEEEeCCCcEEE--EEcCCH
Q 004214 499 IATYDKHEDKIWAL-AVGKKTEMFATGGSDALVNL--WHDSTA 538 (768)
Q Consensus 499 ~~~~~~~~~~v~~l-~~s~~~~~l~s~~~dg~v~v--w~~~~~ 538 (768)
+..+..|...+..+ +++++.-++++++.+....+ |+..++
T Consensus 328 ~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g 370 (662)
T 3azo_A 328 LVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTG 370 (662)
T ss_dssp EEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTC
T ss_pred EEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 67777788888877 55444444455565654444 454443
No 176
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.72 E-value=1.2e-15 Score=172.90 Aligned_cols=311 Identities=11% Similarity=0.037 Sum_probs=187.6
Q ss_pred EEEcCCCcEEEEEEeeCCCccEEEEE--eCCCcEEEEECCCCeeEEEecCccceeE---------EEEEc--CCCCE-EE
Q 004214 25 YFKGHKGVVSSILFHPDTDKSLLFSG--SDDATVRVWDLLAKKCVATLDKHFSRVT---------SMAIT--SDGST-LI 90 (768)
Q Consensus 25 ~l~gh~~~V~~l~~spd~~~~~l~sg--~~dg~I~iWd~~~~~~~~~l~~h~~~V~---------~l~fs--~d~~~-L~ 90 (768)
.+.+|...|..++|+++ ..++++. +.++...||....+.....+..|...+. ...|+ |||++ |+
T Consensus 18 ~~~~~~~~~~~~~~s~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la 95 (662)
T 3azo_A 18 LVASRSGRPACVGAVGD--EVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLV 95 (662)
T ss_dssp HHHHTCSCCEEEEEETT--EEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEE
T ss_pred HHhhcCCccceeEEcCC--eEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEE
Confidence 45679999999999975 4446776 5688999999755666677877776666 66666 99998 77
Q ss_pred EEeC-CCeEEEEECC--C-CeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEE
Q 004214 91 SAGR-DKVVNLWDLR--D-YSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWN 166 (768)
Q Consensus 91 s~~~-dg~i~vWd~~--~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd 166 (768)
.++. +..|.+|++. . +... .+.... .
T Consensus 96 ~~~~~~~~l~~~~~~~~g~~~~~-~l~~~~---------~---------------------------------------- 125 (662)
T 3azo_A 96 FTHFGDQRLYAFEPDAPGGAVPR-PLTPVS---------A---------------------------------------- 125 (662)
T ss_dssp EEBTTTCCEEEECTTSTTCCCCE-ECSCCC---------C----------------------------------------
T ss_pred EEECCCCeEEEEcCCCCCCCCCE-eccCCc---------c----------------------------------------
Confidence 6554 4566666654 2 3211 111000 0
Q ss_pred cCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEE
Q 004214 167 ADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLK 246 (768)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 246 (768)
..+........++|++..++.++.+..- .
T Consensus 126 --------------------~~~~~~~~~~~~spDg~~l~~~~~~~~~-------~------------------------ 154 (662)
T 3azo_A 126 --------------------VGGGLRWADPVLLPERGEVWCMAEEFTG-------E------------------------ 154 (662)
T ss_dssp --------------------STTCEEEEEEEEETTTTEEEEEEEEECS-------S------------------------
T ss_pred --------------------CCCCccccCcEECCCCCEEEEEEecccC-------C------------------------
Confidence 0000112233344444433333322000 0
Q ss_pred EecCCCCEEEEEeCCCcEEEEECCC------ceeeeeee-CCccceEEEeeeeecCCCEEEEEEeCC--------CeEEE
Q 004214 247 FLGEEEQYLAVATNIEQVQVYDLSS------MSCSYVLA-GHSEIVLCLDTCALSSGKILIVTGSKD--------NSVRL 311 (768)
Q Consensus 247 ~~~~~~~~l~~~~~~~~i~i~d~~~------~~~~~~~~-~~~~~v~~l~~~~~~~~~~~l~~~~~d--------g~i~i 311 (768)
.+ ......|++||+.+ +... .+. .+...+..+. ++++++. |+.++.+ ..|++
T Consensus 155 --~~-------~~~~~~i~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~--~SpDG~~-la~~~~~~~~~~~~~~~i~~ 221 (662)
T 3azo_A 155 --GP-------SDVRRFLAAVPLDGSAAADRSAVR-ELSDDAHRFVTGPR--LSPDGRQ-AVWLAWDHPRMPWEGTELKT 221 (662)
T ss_dssp --ST-------TCEEEEEEEEETTSTTTTCGGGSE-ESSCSCSSEECCCE--ECTTSSE-EEEEEECTTCCTTTCEEEEE
T ss_pred --CC-------CCceeEEEEEECCCCccccCCcee-EEEecCCCcccCce--ECCCCCE-EEEEECCCCCCCCCCcEEEE
Confidence 00 00014688888877 5443 444 4455565665 7788887 5555533 47999
Q ss_pred EeCC-Cc---eEEEeeecccCcEEEEEEecCCCcEEEEEeCCC--eEEEEeCCCCCCCCccccccceeeEeeccCC----
Q 004214 312 WDSE-SR---CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDH--TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGK---- 381 (768)
Q Consensus 312 wd~~-~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---- 381 (768)
||+. ++ .......+|...+..++|+|+|+ +++++..++ .|..||+..+. .......+..
T Consensus 222 ~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~-l~~~~~~~~~~~l~~~~~~~~~----------~~~l~~~~~~~~~p 290 (662)
T 3azo_A 222 ARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGS-LIVATDRTGWWNLHRVDPATGA----------ATQLCRREEEFAGP 290 (662)
T ss_dssp EEECTTSCEEEEEEEEEETTBCEEEEEECTTSC-EEEEECTTSSCEEEEECTTTCC----------EEESSCCSSBSSCC
T ss_pred EEECCCCcccccEEeCCCCCceEcceEECCCCe-EEEEECCCCCeEEEEEECCCCc----------eeecccccccccCc
Confidence 9998 56 55555556678899999999988 888888888 45555543321 1111111111
Q ss_pred ----CeEEEEEccCCCEEEEEeCCCcEEEE--eCCCCceEEEEeccCCCeEEE-EEccCCCEEEEeeCCC--cEEEEeCC
Q 004214 382 ----DINSLAVAPNDSLVCTGSQDRTACVW--RLPDLVSVVTFRGHKRGIWSV-EFSPVDQVVITASGDK--TIKIWSIS 452 (768)
Q Consensus 382 ----~i~~~~~s~~~~~l~~~~~dg~i~i~--d~~~~~~~~~~~~~~~~v~~v-~~s~~~~~l~t~~~d~--~i~iwd~~ 452 (768)
.+.+++|+|+++++++++. +.+++| |+.+++ +..+..|...+..+ +++++.-++++++.+. .|.+||+.
T Consensus 291 ~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~ 368 (662)
T 3azo_A 291 LWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTV 368 (662)
T ss_dssp CCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETT
T ss_pred cccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECC
Confidence 1567899999999999998 999999 555554 66777777777777 5544333444455554 46666777
Q ss_pred CCceeEEeecCC
Q 004214 453 DGSCLKTFEGHT 464 (768)
Q Consensus 453 ~~~~~~~~~~~~ 464 (768)
+++.......+.
T Consensus 369 ~g~~~~l~~~~~ 380 (662)
T 3azo_A 369 TGRARTIGARHT 380 (662)
T ss_dssp TCCEEEEESCCC
T ss_pred CCceEEeecCCc
Confidence 777554444443
No 177
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.69 E-value=4.3e-14 Score=141.52 Aligned_cols=239 Identities=11% Similarity=0.158 Sum_probs=174.5
Q ss_pred cCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeee------CCccceEEEeeeeecCCCEEEEEEeC-CCeEE
Q 004214 238 YNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLA------GHSEIVLCLDTCALSSGKILIVTGSK-DNSVR 310 (768)
Q Consensus 238 ~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~------~~~~~v~~l~~~~~~~~~~~l~~~~~-dg~i~ 310 (768)
+-..+.++++.+ ++.++++...++.|.+||.. +.....+. ++...+.+++ +.+.++.++++... ++.|.
T Consensus 28 ~~~~p~~v~~~~-~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~--~~~~~g~l~v~~~~~~~~i~ 103 (286)
T 1q7f_A 28 QFTEPSGVAVNA-QNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVA--VVRNSGDIIVTERSPTHQIQ 103 (286)
T ss_dssp CBSCEEEEEECT-TCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEE--EETTTTEEEEEECGGGCEEE
T ss_pred ccCCCceEEECC-CCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEE--EEcCCCeEEEEcCCCCCEEE
Confidence 344677888875 56677777888999999987 55554443 2335567775 54455564555533 89999
Q ss_pred EEeCCCceEEEeee-cccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEee--ccCCCeEEEE
Q 004214 311 LWDSESRCCVGVGT-GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVA--AHGKDINSLA 387 (768)
Q Consensus 311 iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~ 387 (768)
+|| .+++.+..+. .+...+..++++|++. ++++...++.|.+|+.... ...... .+...+.+++
T Consensus 104 ~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~g~-----------~~~~~~~~~~~~~p~~i~ 170 (286)
T 1q7f_A 104 IYN-QYGQFVRKFGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQNGN-----------VLHKFGCSKHLEFPNGVV 170 (286)
T ss_dssp EEC-TTSCEEEEECTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTTSC-----------EEEEEECTTTCSSEEEEE
T ss_pred EEC-CCCcEEEEecCccCCCceEEEEeCCCC-EEEEECCCCEEEEEcCCCC-----------EEEEeCCCCccCCcEEEE
Confidence 999 5566665553 3446789999999975 7777778899999986421 111111 3445689999
Q ss_pred EccCCCEEEEEeCCCcEEEEeCCCCceEEEEecc--CCCeEEEEEccCCCEEEEeeCCC-cEEEEeCCCCceeEEeecCC
Q 004214 388 VAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGH--KRGIWSVEFSPVDQVVITASGDK-TIKIWSISDGSCLKTFEGHT 464 (768)
Q Consensus 388 ~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~v~~v~~s~~~~~l~t~~~d~-~i~iwd~~~~~~~~~~~~~~ 464 (768)
++|+|+++++...++.|++||. +++.+..+..+ ...+..++++|+|+++++...++ .|.+||. +++.+..+..+.
T Consensus 171 ~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~ 248 (286)
T 1q7f_A 171 VNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKV 248 (286)
T ss_dssp ECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESS
T ss_pred ECCCCCEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccC
Confidence 9999998888788899999997 45566666543 35789999999999998888876 9999995 677777776554
Q ss_pred C--cEEEEEEEeCCCEEEEEeCCCcEEEEECCCC
Q 004214 465 S--SVLRASFLTRGAQIVSCGADGLVKLWTVRTG 496 (768)
Q Consensus 465 ~--~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 496 (768)
. .+..++++|+|+++++ +.|+.|++|++...
T Consensus 249 ~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 249 KHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp CCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred CCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 3 4789999999986666 67899999998654
No 178
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.68 E-value=3.6e-14 Score=146.57 Aligned_cols=241 Identities=10% Similarity=0.091 Sum_probs=165.7
Q ss_pred CCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCC---C--eEEEEeCCCceEEEeeecccCcEEEEEE
Q 004214 261 IEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKD---N--SVRLWDSESRCCVGVGTGHMGAVGAVAF 335 (768)
Q Consensus 261 ~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~d---g--~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 335 (768)
++.|.+||+.+++... + ..+..+. ++|+++. |+.++.+ + .|.+|++.+++.......+. +..++|
T Consensus 42 ~~~l~~~d~~~~~~~~-l----~~~~~~~--~SpDg~~-la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~--~~~~~w 111 (347)
T 2gop_A 42 ENTIVIENLKNNARRF-I----ENATMPR--ISPDGKK-IAFMRANEEKKVSEIWVADLETLSSKKILEAKN--IRSLEW 111 (347)
T ss_dssp EEEEEEEETTTCCEEE-E----ESCEEEE--ECTTSSE-EEEEEEETTTTEEEEEEEETTTTEEEEEEEESE--EEEEEE
T ss_pred cceEEEEeCCCCceEE-c----ccCCCeE--ECCCCCE-EEEEEeccCCCcceEEEEECCCCceEEEEcCCC--ccceeE
Confidence 4679999998876543 3 4455665 7788887 5444432 3 48888998887766555443 999999
Q ss_pred ecCCCcEEEEEeC--------------------------CCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEc
Q 004214 336 SKKLQNFLVSGSS--------------------------DHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVA 389 (768)
Q Consensus 336 ~~~~~~~l~s~~~--------------------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 389 (768)
+|+++.+++++.. ...|.+||+..+. ....+.. . .+..++|+
T Consensus 112 spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~----------~~~~l~~-~-~~~~~~~s 179 (347)
T 2gop_A 112 NEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEE----------VIEEFEK-P-RFSSGIWH 179 (347)
T ss_dssp CTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTE----------EEEEEEE-E-TTCEEEEE
T ss_pred CCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCe----------EEeeecC-C-CcccccCC
Confidence 9998754444322 2568888886431 1011222 2 78899999
Q ss_pred cCCCEEEEEeCCC-------cEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCC--------CcEEEEeCCCC
Q 004214 390 PNDSLVCTGSQDR-------TACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGD--------KTIKIWSISDG 454 (768)
Q Consensus 390 ~~~~~l~~~~~dg-------~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d--------~~i~iwd~~~~ 454 (768)
|+| +++++..++ ...+|.+.+++. ..+..+ ..+..+ +|+|+.|+.++.+ ..|.+|| ++
T Consensus 180 pdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~ 252 (347)
T 2gop_A 180 RDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE-EKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GK 252 (347)
T ss_dssp TTE-EEEEEECCCSSCCSSCCEEEEEEETTEE-EEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SS
T ss_pred CCe-EEEEEecccccccccccccEEEeCCCce-EEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CC
Confidence 999 777776542 344544444443 344444 555554 9999988877654 3688888 66
Q ss_pred ceeEEeecCCCcEEE-EEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcE-EE
Q 004214 455 SCLKTFEGHTSSVLR-ASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALV-NL 532 (768)
Q Consensus 455 ~~~~~~~~~~~~v~~-~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v-~v 532 (768)
+......+|...+.. +.|+ ++ ++++++.++.+++| +.+++..... .+...|.+++|+| ..+++++.++.. .+
T Consensus 253 ~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~-~~~~~v~~~~~s~--~~~~~~~~~~~~~~l 326 (347)
T 2gop_A 253 EVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIA-KGRHWIMGFDVDE--IVVYLKETATRLREL 326 (347)
T ss_dssp CEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEE-CSSSEEEEEEESS--SEEEEEECSSSCCEE
T ss_pred ceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEe-cCCCeEEeeeeeC--cEEEEEcCCCChHHh
Confidence 655555566778886 8999 88 88999999999999 8877665444 4578899999999 677788777765 78
Q ss_pred EEcC
Q 004214 533 WHDS 536 (768)
Q Consensus 533 w~~~ 536 (768)
|...
T Consensus 327 ~~~~ 330 (347)
T 2gop_A 327 FTWD 330 (347)
T ss_dssp EEES
T ss_pred eEeC
Confidence 8764
No 179
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.68 E-value=1.9e-14 Score=144.96 Aligned_cols=243 Identities=12% Similarity=0.075 Sum_probs=173.9
Q ss_pred eeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEe
Q 004214 277 VLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS 356 (768)
Q Consensus 277 ~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd 356 (768)
.+..+.....++. +.++++.+++++..++.|..|+..++ ...+..+...+.+++++|++. ++++...++.|.+||
T Consensus 22 ~l~~~~~~~eg~~--~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~-l~v~~~~~~~i~~~d 96 (296)
T 3e5z_A 22 RLADGFTWTEGPV--YVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGH-LIACSHGLRRLERQR 96 (296)
T ss_dssp EEECCCSSEEEEE--EEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCC-EEEEETTTTEEEEEC
T ss_pred EEecCCccccCCe--EeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCc-EEEEecCCCeEEEEc
Confidence 3444445556665 77888766889999999999999987 556666778899999999976 666666678999999
Q ss_pred CCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEE----e-------------CCCcEEEEeCCCCceEEEEe
Q 004214 357 FDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTG----S-------------QDRTACVWRLPDLVSVVTFR 419 (768)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~----~-------------~dg~i~i~d~~~~~~~~~~~ 419 (768)
...+.... ............+..++++|+|+++++. + ..+.|..++.. ++ ...+.
T Consensus 97 ~~~g~~~~------~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~ 168 (296)
T 3e5z_A 97 EPGGEWES------IADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPI 168 (296)
T ss_dssp STTCCEEE------EECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEE
T ss_pred CCCCcEEE------EeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEee
Confidence 85432100 0000001112356789999999988873 2 13456666654 43 34455
Q ss_pred ccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCC-CCce---eEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCC
Q 004214 420 GHKRGIWSVEFSPVDQVVITASGDKTIKIWSIS-DGSC---LKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRT 495 (768)
Q Consensus 420 ~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~-~~~~---~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 495 (768)
.+......++|+|+++.+++.+.++.|.+|++. ++.. ...+..+...+..+++.++|+++++. ++.|.+|+..
T Consensus 169 ~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~- 245 (296)
T 3e5z_A 169 RDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD- 245 (296)
T ss_dssp CCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-
T ss_pred cCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-
Confidence 566778999999999988777788999999987 5554 33443355567789999999876666 7889999986
Q ss_pred CeEEEEeccCCCcEEEEEE-cCCCCEEEEEeCCCcEEEEEcCC
Q 004214 496 GECIATYDKHEDKIWALAV-GKKTEMFATGGSDALVNLWHDST 537 (768)
Q Consensus 496 ~~~~~~~~~~~~~v~~l~~-s~~~~~l~s~~~dg~v~vw~~~~ 537 (768)
++.+..+..+.. +++++| +|+++.|++++.++. .-++..+
T Consensus 246 g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~l-~~~~~~~ 286 (296)
T 3e5z_A 246 GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTEF-WSIETNV 286 (296)
T ss_dssp SCEEEEEECSSC-CCEEEEESTTSCEEEEEETTEE-EEEECSC
T ss_pred CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCeE-EEEEccc
Confidence 888888887777 899999 689999998887753 3334433
No 180
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.67 E-value=3.9e-14 Score=144.74 Aligned_cols=241 Identities=14% Similarity=0.111 Sum_probs=178.0
Q ss_pred CCceeEEEEecCCCCEEEEEeCC------------------------CcEEEEECCCceeeeeee-CCccceEEEeeeee
Q 004214 239 NEEILDLKFLGEEEQYLAVATNI------------------------EQVQVYDLSSMSCSYVLA-GHSEIVLCLDTCAL 293 (768)
Q Consensus 239 ~~~i~~~~~~~~~~~~l~~~~~~------------------------~~i~i~d~~~~~~~~~~~-~~~~~v~~l~~~~~ 293 (768)
-+.+..+++.+ +++++++...+ +.|.+||..+++....+. ++......++ +.
T Consensus 23 l~~v~~va~d~-~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia--~d 99 (329)
T 3fvz_A 23 PGQVSGVALDS-KNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLS--ID 99 (329)
T ss_dssp CSCEEEEEECT-TCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEE--EC
T ss_pred cCCceEEEECC-CCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEE--EC
Confidence 35677888775 45666666665 479999999888776554 3445677776 66
Q ss_pred cCCCEEEEEEeCCCeEEEEeCCCce-EEEee---------ecccCcEEEEEEecCCCcEEEEEe-CCCeEEEEeCCCCCC
Q 004214 294 SSGKILIVTGSKDNSVRLWDSESRC-CVGVG---------TGHMGAVGAVAFSKKLQNFLVSGS-SDHTIKVWSFDGLSD 362 (768)
Q Consensus 294 ~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~---------~~~~~~v~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~ 362 (768)
+++. ++++...++.|++||..... .+..+ ..+......++++|++..++++.+ .++.|++|+....
T Consensus 100 ~~g~-l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~-- 176 (329)
T 3fvz_A 100 TDGN-YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGK-- 176 (329)
T ss_dssp TTSC-EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTSC--
T ss_pred CCCC-EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCCC--
Confidence 6666 58888889999999986552 33333 234557899999994355777776 6999999995421
Q ss_pred CCccccccceeeEee----------ccCCCeEEEEEccC-CCEEEEEeCCCcEEEEeCCCCceEEEEe--ccCCCeEEEE
Q 004214 363 DAEQPMNLKAKAVVA----------AHGKDINSLAVAPN-DSLVCTGSQDRTACVWRLPDLVSVVTFR--GHKRGIWSVE 429 (768)
Q Consensus 363 ~~~~~~~~~~~~~~~----------~~~~~i~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~v~~v~ 429 (768)
...... .+-..+..++++|+ +.++++...++.|++|+..+++.+..+. .+...+.+++
T Consensus 177 ---------~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~ 247 (329)
T 3fvz_A 177 ---------FVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAIS 247 (329)
T ss_dssp ---------EEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEE
T ss_pred ---------EEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceee
Confidence 111111 12234789999998 7777887888999999999888888874 3566789999
Q ss_pred EccCCCEEEE-------eeCCCcEEEEeCCCCceeEEee---cCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCC
Q 004214 430 FSPVDQVVIT-------ASGDKTIKIWSISDGSCLKTFE---GHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRT 495 (768)
Q Consensus 430 ~s~~~~~l~t-------~~~d~~i~iwd~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 495 (768)
|+| +..+++ ...+..|++||+.+++.+..+. ++...+..++++|+|..+++...++.|++|++..
T Consensus 248 ~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 248 YIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp EET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred ecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 999 433333 3345689999999999999884 6777899999999998788888899999999753
No 181
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.66 E-value=6e-14 Score=143.97 Aligned_cols=267 Identities=12% Similarity=0.037 Sum_probs=183.1
Q ss_pred eeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEE
Q 004214 242 ILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVG 321 (768)
Q Consensus 242 i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 321 (768)
+.++.|.+. ...++....++.++.| .+.....+..+...+.++. +.+++. +++++..++.|.+||..+++...
T Consensus 8 ~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~g~-l~~~~~~~~~i~~~d~~~~~~~~ 80 (333)
T 2dg1_A 8 LPTLFYSGK-SNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLN--FDRQGQ-LFLLDVFEGNIFKINPETKEIKR 80 (333)
T ss_dssp CCBCCSCGG-GGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEE--ECTTSC-EEEEETTTCEEEEECTTTCCEEE
T ss_pred cceeeecCC-ccceeEEeecccCccc---ccceeEEEeccCccccCcE--ECCCCC-EEEEECCCCEEEEEeCCCCcEEE
Confidence 455555543 3334444566788888 3445556666666777776 556555 57788889999999999887766
Q ss_pred eeecccCcEEEEEEecCCCcEEEEEeCC----CeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEE
Q 004214 322 VGTGHMGAVGAVAFSKKLQNFLVSGSSD----HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCT 397 (768)
Q Consensus 322 ~~~~~~~~v~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 397 (768)
....+...+.+++++|++. ++++...+ +.|.+||....... .......+...+.+++++|+|+++++
T Consensus 81 ~~~~~~~~~~~i~~~~dg~-l~v~~~~~~~~~~~i~~~d~~~~~~~--------~~~~~~~~~~~~~~i~~d~~g~l~v~ 151 (333)
T 2dg1_A 81 PFVSHKANPAAIKIHKDGR-LFVCYLGDFKSTGGIFAATENGDNLQ--------DIIEDLSTAYCIDDMVFDSKGGFYFT 151 (333)
T ss_dssp EEECSSSSEEEEEECTTSC-EEEEECTTSSSCCEEEEECTTSCSCE--------EEECSSSSCCCEEEEEECTTSCEEEE
T ss_pred EeeCCCCCcceEEECCCCc-EEEEeCCCCCCCceEEEEeCCCCEEE--------EEEccCccCCcccceEECCCCCEEEE
Confidence 5545677899999999976 66666655 68999998754211 00000123457899999999988777
Q ss_pred EeC------CCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEE-EeeCCCcEEEEeCCC-CceeEE--------ee
Q 004214 398 GSQ------DRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVI-TASGDKTIKIWSISD-GSCLKT--------FE 461 (768)
Q Consensus 398 ~~~------dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~-t~~~d~~i~iwd~~~-~~~~~~--------~~ 461 (768)
... .+.|..++..+++... +..+...+..++|+|+++.|+ +.+.++.|.+||+.+ +..+.. +.
T Consensus 152 ~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~ 230 (333)
T 2dg1_A 152 DFRGYSTNPLGGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFT 230 (333)
T ss_dssp ECCCBTTBCCEEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECC
T ss_pred eccccccCCCceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecC
Confidence 654 3556667765544433 333345678999999998554 445678999999864 443322 12
Q ss_pred cCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCC------cEEEEEEcCCCCEEEEEeCC
Q 004214 462 GHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHED------KIWALAVGKKTEMFATGGSD 527 (768)
Q Consensus 462 ~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~------~v~~l~~s~~~~~l~s~~~d 527 (768)
++ ..+..++++++|+++++...++.|.+||. +++.+..+..+.. .+.+++|+|++..|+.++.+
T Consensus 231 ~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 231 GH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp SS-SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred CC-CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence 22 46788999999998888878899999998 5777777754433 68899999998777665555
No 182
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.66 E-value=1.1e-13 Score=143.02 Aligned_cols=174 Identities=9% Similarity=0.090 Sum_probs=118.5
Q ss_pred CCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCC-------eEEEEeCCCCCCCCccccccceeeEeec
Q 004214 306 DNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDH-------TIKVWSFDGLSDDAEQPMNLKAKAVVAA 378 (768)
Q Consensus 306 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg-------~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 378 (768)
...|.+||+.+++.+..+.. . .+..++|+|++ +++++..++ ...+|.++.+ . ...+..
T Consensus 151 ~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d~~--------~---~~~l~~ 215 (347)
T 2gop_A 151 KTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWEDG--------K---EEKMFE 215 (347)
T ss_dssp EEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEETT--------E---EEEEEE
T ss_pred cceEEEEECCCCeEEeeecC-C-CcccccCCCCe--EEEEEecccccccccccccEEEeCCC--------c---eEEecc
Confidence 45799999998887444444 3 78899999997 677766542 4455554411 1 111122
Q ss_pred cCCCeEEEEEccCCCEEEEEeCC--------CcEEEEeCCCCceEEEEeccCCCeEE-EEEccCCCEEEEeeCCCcEEEE
Q 004214 379 HGKDINSLAVAPNDSLVCTGSQD--------RTACVWRLPDLVSVVTFRGHKRGIWS-VEFSPVDQVVITASGDKTIKIW 449 (768)
Q Consensus 379 ~~~~i~~~~~s~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~v~~-v~~s~~~~~l~t~~~d~~i~iw 449 (768)
+ ..+..+ +|+|+.|+.++.+ ..|.+|| +++......++...+.. +.|+ ++ ++++++.++.++||
T Consensus 216 ~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~ 288 (347)
T 2gop_A 216 K-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY 288 (347)
T ss_dssp E-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE
T ss_pred C-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE
Confidence 2 344444 9999999887754 3688888 55554444556677886 9999 88 99999999999999
Q ss_pred eCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcE-EEEECCCCeEEEEeccCCC
Q 004214 450 SISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLV-KLWTVRTGECIATYDKHED 507 (768)
Q Consensus 450 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i-~iwd~~~~~~~~~~~~~~~ 507 (768)
+.+++.. .+..+...|.++.|+| ..+++++.++.. .+|.+. ++ ...+..|+.
T Consensus 289 -~~~g~~~-~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~-~~~lt~~n~ 341 (347)
T 2gop_A 289 -IWDGEIK-PIAKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD-GE-EKQLTDYND 341 (347)
T ss_dssp -EESSSEE-EEECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES-SS-EEECCCTTS
T ss_pred -EcCCceE-EEecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC-Cc-EEEeccccH
Confidence 8866654 4444678899999999 677777777754 777766 55 344554544
No 183
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.65 E-value=1.5e-13 Score=140.21 Aligned_cols=257 Identities=9% Similarity=-0.001 Sum_probs=185.5
Q ss_pred CCCcEEEEECCCceeeeeee------CCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEE
Q 004214 260 NIEQVQVYDLSSMSCSYVLA------GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAV 333 (768)
Q Consensus 260 ~~~~i~i~d~~~~~~~~~~~------~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 333 (768)
.++.|.+||..+++....+. ........+. + .++.++++...++.|.+||..+++.+..+. .......+
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~--~--~~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i 89 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMV--I--RDGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYI 89 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEE--E--ETTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEE
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEE--E--ECCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEE
Confidence 37899999999988765441 1122345553 3 345557777778999999999999988775 34668899
Q ss_pred EEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccC-----CCeEEEEEccCCCEEEEEe-CCCcEEEE
Q 004214 334 AFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHG-----KDINSLAVAPNDSLVCTGS-QDRTACVW 407 (768)
Q Consensus 334 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-----~~i~~~~~s~~~~~l~~~~-~dg~i~i~ 407 (768)
++++++ .++++...++.|.+||..... ......... .....+++ .+++++++.. .++.|.+|
T Consensus 90 ~~~~~g-~lyv~~~~~~~v~~iD~~t~~----------~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~vi 157 (328)
T 3dsm_A 90 HFLSDE-KAYVTQIWDYRIFIINPKTYE----------ITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKI 157 (328)
T ss_dssp EEEETT-EEEEEEBSCSEEEEEETTTTE----------EEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEE
T ss_pred EEeCCC-eEEEEECCCCeEEEEECCCCe----------EEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEE
Confidence 998886 455555589999999987432 111111111 14556777 4444444443 48899999
Q ss_pred eCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCC----------CcEEEEeCCCCceeEEeecC-CCcEEEEEEEeCC
Q 004214 408 RLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGD----------KTIKIWSISDGSCLKTFEGH-TSSVLRASFLTRG 476 (768)
Q Consensus 408 d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d----------~~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~~ 476 (768)
|+.+++....+.. ......++++|+|++++++..+ +.|.+||..+++....+... ......++|+|++
T Consensus 158 D~~t~~~~~~i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~ 236 (328)
T 3dsm_A 158 DTETDKVVDELTI-GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTR 236 (328)
T ss_dssp ETTTTEEEEEEEC-SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTS
T ss_pred ECCCCeEEEEEEc-CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCC
Confidence 9999988887764 3345789999999988887665 78999999999888777633 2468899999999
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEE--eccCCCcEEEEEEcC-CCCEEEEE----eCCCcEEEEEcC
Q 004214 477 AQIVSCGADGLVKLWTVRTGECIAT--YDKHEDKIWALAVGK-KTEMFATG----GSDALVNLWHDS 536 (768)
Q Consensus 477 ~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~v~~l~~s~-~~~~l~s~----~~dg~v~vw~~~ 536 (768)
++|+++.. .|.+||..+++.... +.........++++| ++..+++. ..++.|.+|+..
T Consensus 237 ~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 237 DTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp CEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred CEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence 99988765 899999998876421 121245688999999 56666666 678899999876
No 184
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.64 E-value=1.2e-13 Score=136.25 Aligned_cols=211 Identities=13% Similarity=0.107 Sum_probs=168.1
Q ss_pred EEEEEEeCCCeEEEEeCCCceEEEeeeccc-CcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEe
Q 004214 298 ILIVTGSKDNSVRLWDSESRCCVGVGTGHM-GAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVV 376 (768)
Q Consensus 298 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 376 (768)
.+|++++.++.|.+||..+++.+..+..+. ..+.++.++|+|+ +++ +.++.|..||.. +. ....+
T Consensus 6 ~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~-ilv--s~~~~V~~~d~~-G~----------~~W~~ 71 (276)
T 3no2_A 6 HLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGE-ILF--SYSKGAKMITRD-GR----------ELWNI 71 (276)
T ss_dssp EEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSC-EEE--ECBSEEEEECTT-SC----------EEEEE
T ss_pred cEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCC-EEE--eCCCCEEEECCC-CC----------EEEEE
Confidence 359999999999999999999999988776 4788999999976 566 457889999873 31 22222
Q ss_pred ecc-CCCeEEEEEccCCCEEEEEeC-CCcEEEEeCCCCceEEEEec------cCCCeEEEEEccCCCEEEEeeCCCcEEE
Q 004214 377 AAH-GKDINSLAVAPNDSLVCTGSQ-DRTACVWRLPDLVSVVTFRG------HKRGIWSVEFSPVDQVVITASGDKTIKI 448 (768)
Q Consensus 377 ~~~-~~~i~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~------~~~~v~~v~~s~~~~~l~t~~~d~~i~i 448 (768)
..+ ...+.++.+.|+|+++++.+. ++.+..+|. +++.+..+.. +......+++.++|+++++...++.|..
T Consensus 72 ~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~ 150 (276)
T 3no2_A 72 AAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVRE 150 (276)
T ss_dssp ECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEE
T ss_pred cCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEE
Confidence 322 346788999999999999887 778888885 7777766652 2234556788999999999999999999
Q ss_pred EeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCC------CcEEEEEEcCCCCEEE
Q 004214 449 WSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHE------DKIWALAVGKKTEMFA 522 (768)
Q Consensus 449 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------~~v~~l~~s~~~~~l~ 522 (768)
||.. |+.+.++..+ ..+..+.+.++|+.+++++.++.|..+|..+|+.+.++..+. ..+.+++..++|..++
T Consensus 151 ~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v 228 (276)
T 3no2_A 151 IAPN-GQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYI 228 (276)
T ss_dssp ECTT-SCEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEE
T ss_pred ECCC-CCEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEE
Confidence 9997 9999999865 345567888999999999988899999999999999986432 2378889999999988
Q ss_pred EEe
Q 004214 523 TGG 525 (768)
Q Consensus 523 s~~ 525 (768)
+..
T Consensus 229 ~~~ 231 (276)
T 3no2_A 229 CNW 231 (276)
T ss_dssp EEE
T ss_pred Eec
Confidence 873
No 185
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.63 E-value=5.4e-12 Score=127.02 Aligned_cols=279 Identities=8% Similarity=-0.043 Sum_probs=190.2
Q ss_pred CCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeee-eeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCc
Q 004214 239 NEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYV-LAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR 317 (768)
Q Consensus 239 ~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~-~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 317 (768)
...+.++++.+ ++.++++...++.|..||.. +..... ...+...+.++. ..+++. +.++...++.|..||....
T Consensus 14 ~~~~~~i~~d~-~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~--~~~~g~-l~v~~~~~~~i~~~~~~g~ 88 (299)
T 2z2n_A 14 DTGPYGITVSD-KGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLT--ISSDGE-VWFTENAANKIGRITKKGI 88 (299)
T ss_dssp SCCEEEEEECT-TSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEE--ECTTSC-EEEEETTTTEEEEECTTSC
T ss_pred CCCccceEECC-CCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEE--ECCCCC-EEEeCCCCCeEEEECCCCc
Confidence 45677888764 55555555557899999988 544322 233455677775 555554 3666566889999998733
Q ss_pred eEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEE
Q 004214 318 CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCT 397 (768)
Q Consensus 318 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 397 (768)
............+..+++.+++. ++++...++.|..||.. +. . ...........+.+++++++|+++++
T Consensus 89 ~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~d~~-g~--------~-~~~~~~~~~~~~~~i~~~~~g~l~v~ 157 (299)
T 2z2n_A 89 IKEYTLPNPDSAPYGITEGPNGD-IWFTEMNGNRIGRITDD-GK--------I-REYELPNKGSYPSFITLGSDNALWFT 157 (299)
T ss_dssp EEEEECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECTT-CC--------E-EEEECSSTTCCEEEEEECTTSCEEEE
T ss_pred EEEEeCCCcCCCceeeEECCCCC-EEEEecCCceEEEECCC-CC--------E-EEecCCCCCCCCceEEEcCCCCEEEE
Confidence 21222223456789999999865 66666678899999873 21 0 11111223456899999999988887
Q ss_pred EeCCCcEEEEeCCCCceEEE-EeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEE-eecCCCcEEEEEEEeC
Q 004214 398 GSQDRTACVWRLPDLVSVVT-FRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKT-FEGHTSSVLRASFLTR 475 (768)
Q Consensus 398 ~~~dg~i~i~d~~~~~~~~~-~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~-~~~~~~~v~~~~~s~~ 475 (768)
...++.|..||. +++.... +......+.+++++++|+++++...++.|.+||. +++.... ...+...+..+++.++
T Consensus 158 ~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~ 235 (299)
T 2z2n_A 158 ENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAG 235 (299)
T ss_dssp ETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECST
T ss_pred eCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCC
Confidence 777789999998 6655432 2334556889999999998887777889999999 6664332 2335567899999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEE-eccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCH
Q 004214 476 GAQIVSCGADGLVKLWTVRTGECIAT-YDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTA 538 (768)
Q Consensus 476 ~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~ 538 (768)
|+.+++...++.|..||. +++.... +..+...+.++++ +++..+++.. .+.+..++..+.
T Consensus 236 g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~ 296 (299)
T 2z2n_A 236 IDLWFTEWGANKIGRLTS-NNIIEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKD 296 (299)
T ss_dssp TCEEEEETTTTEEEEEET-TTEEEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC--
T ss_pred CCEEEeccCCceEEEECC-CCceEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCcc
Confidence 987776667789999998 5553322 2344567899999 9998877766 456677776654
No 186
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.63 E-value=1.9e-13 Score=155.57 Aligned_cols=246 Identities=7% Similarity=0.003 Sum_probs=174.7
Q ss_pred CccceEEEeeeeecCCCEEEEEEeCCC----eEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCe-----
Q 004214 281 HSEIVLCLDTCALSSGKILIVTGSKDN----SVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHT----- 351 (768)
Q Consensus 281 ~~~~v~~l~~~~~~~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~----- 351 (768)
|...+..+. ++|+++.++++.+.+| .|++||+.+++.......+ ..+..++|+|+|+ .|+.++.++.
T Consensus 123 ~~~~~~~~~--~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~-~l~~~~~~~~~~~~~ 198 (710)
T 2xdw_A 123 GTVALRGYA--FSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGK-GMFYNAYPQQDGKSD 198 (710)
T ss_dssp SCEEEEEEE--ECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSS-EEEEEECCCCSSCCS
T ss_pred CCEEEEEEE--ECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCC-EEEEEEECCcccccc
Confidence 334566666 7788887444444444 8999999999877643322 2366799999987 4666666554
Q ss_pred -----------EEEEeCCCCCCCCccccccceeeEe--eccCCCeEEEEEccCCCEEEEEeC-----CCcEEEEeCCC--
Q 004214 352 -----------IKVWSFDGLSDDAEQPMNLKAKAVV--AAHGKDINSLAVAPNDSLVCTGSQ-----DRTACVWRLPD-- 411 (768)
Q Consensus 352 -----------i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~s~~~~~l~~~~~-----dg~i~i~d~~~-- 411 (768)
|++|++..... ...... ..+...+..+.|+|||++|+.++. +..|++||+.+
T Consensus 199 ~~~~~~~~~~~v~~~~l~t~~~--------~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~ 270 (710)
T 2xdw_A 199 GTETSTNLHQKLYYHVLGTDQS--------EDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQES 270 (710)
T ss_dssp SSCCCCCCCCEEEEEETTSCGG--------GCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSS
T ss_pred ccccccCCCCEEEEEECCCCcc--------cceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccc
Confidence 99999875321 111111 224455789999999999988765 56899999976
Q ss_pred ----Cc-eEEEEeccCCCeEEEEEccCCCEEEEeeCC----CcEEEEeCCCCc--eeEEeecCCC--cEEEEEEEeCCCE
Q 004214 412 ----LV-SVVTFRGHKRGIWSVEFSPVDQVVITASGD----KTIKIWSISDGS--CLKTFEGHTS--SVLRASFLTRGAQ 478 (768)
Q Consensus 412 ----~~-~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d----~~i~iwd~~~~~--~~~~~~~~~~--~v~~~~~s~~~~~ 478 (768)
+. ....+..+...+.. .|+|+|+.|+..+.. +.|.+||+.++. ....+..|.. .+..+.|++++.+
T Consensus 271 ~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l 349 (710)
T 2xdw_A 271 NGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFL 349 (710)
T ss_dssp SSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEE
T ss_pred cccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEE
Confidence 43 45666667666655 488999877766553 369999998775 2455555544 6788999877778
Q ss_pred EEEEeCCCc--EEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEE-e---CCCcEEEEEcCCHH
Q 004214 479 IVSCGADGL--VKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATG-G---SDALVNLWHDSTAA 539 (768)
Q Consensus 479 l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~-~---~dg~v~vw~~~~~~ 539 (768)
+++...|+. |.+|++.+|+.+..+..+.+.+..++++|++..++.. + ..+.|.+|++.+++
T Consensus 350 v~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 350 VLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 888888884 6667877888888888788889999999998766633 2 35789999987764
No 187
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.61 E-value=1.3e-13 Score=136.77 Aligned_cols=241 Identities=9% Similarity=-0.041 Sum_probs=169.6
Q ss_pred ceEEEeeeeecCCCEEEE-EEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCC
Q 004214 284 IVLCLDTCALSSGKILIV-TGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSD 362 (768)
Q Consensus 284 ~v~~l~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 362 (768)
...++. +.+++. +++ +.+.++.|.+|+..+.........+...+.++++++++. ++++.. ++.|..||......
T Consensus 25 ~p~~i~--~~~~g~-l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~-~~~i~~~d~~~~~~ 99 (270)
T 1rwi_B 25 SPSGVA--VDSAGN-VYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGT-VYVTDF-NNRVVTLAAGSNNQ 99 (270)
T ss_dssp CEEEEE--ECTTCC-EEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCC-EEEEET-TTEEEEECTTCSCC
T ss_pred CccceE--ECCCCC-EEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCC-EEEEcC-CCEEEEEeCCCceE
Confidence 444554 556665 455 446789999999876554333233445678899999876 555555 88999999764321
Q ss_pred CCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeC
Q 004214 363 DAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASG 442 (768)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~ 442 (768)
..........+.+++++|+|+++++...++.|.+|+..+.............+.+++++|+|+++++...
T Consensus 100 ----------~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~ 169 (270)
T 1rwi_B 100 ----------TVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTD 169 (270)
T ss_dssp ----------EECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGG
T ss_pred ----------eeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECC
Confidence 1111122356889999999998887777889999987655443322233346789999999998888777
Q ss_pred CCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEE
Q 004214 443 DKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFA 522 (768)
Q Consensus 443 d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~ 522 (768)
++.|.+||...+........+...+..+++.++|..+++...++.|.+|+............+...+.+++++++|+.++
T Consensus 170 ~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v 249 (270)
T 1rwi_B 170 NNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYV 249 (270)
T ss_dssp GTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEE
T ss_pred CCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEE
Confidence 88999999877665443334446788999999997777777788999999876554433323346789999999999999
Q ss_pred EEeCCCcEEEEEcCCHH
Q 004214 523 TGGSDALVNLWHDSTAA 539 (768)
Q Consensus 523 s~~~dg~v~vw~~~~~~ 539 (768)
+...++.|.+++...++
T Consensus 250 ~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 250 ADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp EEGGGTEEEEECCCGGG
T ss_pred EECCCCEEEEEcCCCcc
Confidence 99999999999987653
No 188
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.61 E-value=4e-12 Score=131.22 Aligned_cols=295 Identities=11% Similarity=0.007 Sum_probs=186.0
Q ss_pred EEeeCCCccEEEEE-eCCC--cEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEe----------CCCeEEEEEC
Q 004214 37 LFHPDTDKSLLFSG-SDDA--TVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAG----------RDKVVNLWDL 103 (768)
Q Consensus 37 ~~spd~~~~~l~sg-~~dg--~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~----------~dg~i~vWd~ 103 (768)
...|++++.+++.+ +.+. +|.+||..+++.+.++.....+ .++|+|||++|+.+. .++.|.+||.
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~ 104 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDP 104 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEEC
Confidence 44577766333332 2222 8999999999999888765544 999999999999885 3678999999
Q ss_pred CCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeec
Q 004214 104 RDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTIS 183 (768)
Q Consensus 104 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~ 183 (768)
.+++.+.+++.......
T Consensus 105 ~t~~~~~~i~~~~~~~~--------------------------------------------------------------- 121 (373)
T 2mad_H 105 VTFLPIADIELPDAPRF--------------------------------------------------------------- 121 (373)
T ss_pred CCCcEEEEEECCCcccc---------------------------------------------------------------
Confidence 88776666543200000
Q ss_pred ccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeC--C
Q 004214 184 FEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATN--I 261 (768)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~--~ 261 (768)
..+ .....+.++ +++++|+++.. +
T Consensus 122 ---------------------------------------------------~~g--~~p~~~~~s-pDG~~l~v~n~~~~ 147 (373)
T 2mad_H 122 ---------------------------------------------------DVG--PYSWMNANT-PNNADLLFFQFAAG 147 (373)
T ss_pred ---------------------------------------------------ccC--CCccceEEC-CCCCEEEEEecCCC
Confidence 000 001223333 35555555542 4
Q ss_pred CcEEEEECCCceeeee-eeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeee-----cccCc-EEEEE
Q 004214 262 EQVQVYDLSSMSCSYV-LAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGT-----GHMGA-VGAVA 334 (768)
Q Consensus 262 ~~i~i~d~~~~~~~~~-~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~~~~~-v~~~~ 334 (768)
+.|.++| .+++.+.. +.... |+. ..+.+...+++.+.||.+.++|. +++...... ....+ .....
T Consensus 148 ~~v~viD-~t~~~~~~~i~~~~----~~~--~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~ 219 (373)
T 2mad_H 148 PAVGLVV-QGGSSDDQLLSSPT----CYH--IHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPA 219 (373)
T ss_pred CeEEEEE-CCCCEEeEEcCCCc----eEE--EEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecce
Confidence 6788888 88777666 44322 122 34555555777888999999999 776663321 11122 12345
Q ss_pred EecCCCcEEEEEeCCCeEEEEeCCCCCCCCcccccccee--eEeeccCCCeEEEEEccCCCEEEEEeC----------CC
Q 004214 335 FSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAK--AVVAAHGKDINSLAVAPNDSLVCTGSQ----------DR 402 (768)
Q Consensus 335 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~----------dg 402 (768)
+.+++..++++. ..+.+.+.|+................ ............++++|+++.+.++.. ++
T Consensus 220 ~~~~~~~~~~~~-~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~ 298 (373)
T 2mad_H 220 QANKSGRIVWPV-YSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAK 298 (373)
T ss_pred eEecCCEEEEEc-CCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCC
Confidence 666655444444 67889999986432110000000000 000001233445789999988887654 35
Q ss_pred cEEEEeCCCCceEEEEeccCCCeEEEEEccCCC-EEEEee-CCCcEEEEeCCCCceeEEe
Q 004214 403 TACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQ-VVITAS-GDKTIKIWSISDGSCLKTF 460 (768)
Q Consensus 403 ~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~t~~-~d~~i~iwd~~~~~~~~~~ 460 (768)
.|.++|+.+++.+..+.. .....+++|+|||+ +++++. .++.|.+||+.+++.+.++
T Consensus 299 ~V~VID~~t~~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 299 EVTSVTGLVGQTSSQISL-GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred eEEEEECCCCEEEEEEEC-CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 799999999999988863 44689999999999 777777 5899999999999998884
No 189
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.61 E-value=6.7e-13 Score=134.51 Aligned_cols=311 Identities=14% Similarity=0.054 Sum_probs=194.9
Q ss_pred EEEeeCCCccEEEEEe---CCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEe----------CCCeEEEEE
Q 004214 36 ILFHPDTDKSLLFSGS---DDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAG----------RDKVVNLWD 102 (768)
Q Consensus 36 l~~spd~~~~~l~sg~---~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~----------~dg~i~vWd 102 (768)
....|+++..|++... .++.|.+.|..+++.+.++.....+ . ++++|||++|+.+. .++.|.+||
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD 115 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFD 115 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence 4567888874444332 1679999999999999999765555 4 99999999988775 367899999
Q ss_pred CCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceee
Q 004214 103 LRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTI 182 (768)
Q Consensus 103 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~ 182 (768)
..+++.+.+++... +...
T Consensus 116 ~~t~~v~~~I~v~~----------g~r~---------------------------------------------------- 133 (386)
T 3sjl_D 116 PVTLLPTADIELPD----------APRF---------------------------------------------------- 133 (386)
T ss_dssp TTTCCEEEEEEETT----------CCCC----------------------------------------------------
T ss_pred CCCCeEEEEEECCC----------cccc----------------------------------------------------
Confidence 99988777664311 0000
Q ss_pred cccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeC--
Q 004214 183 SFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATN-- 260 (768)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-- 260 (768)
........+.++ +++++++++..
T Consensus 134 ------------------------------------------------------~~g~~P~~~a~s-pDGk~lyVan~~~ 158 (386)
T 3sjl_D 134 ------------------------------------------------------LVGTYPWMTSLT-PDGKTLLFYQFSP 158 (386)
T ss_dssp ------------------------------------------------------CBSCCGGGEEEC-TTSSEEEEEECSS
T ss_pred ------------------------------------------------------ccCCCCceEEEc-CCCCEEEEEEcCC
Confidence 000011122333 34455555542
Q ss_pred CCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCC-ceEEEeeecc----cCcEE-EEE
Q 004214 261 IEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES-RCCVGVGTGH----MGAVG-AVA 334 (768)
Q Consensus 261 ~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~----~~~v~-~~~ 334 (768)
++.|.++|+.+++.+..+..... .. ..+.+...+++.+.||.+.+.++.+ ++.......+ ..++. ...
T Consensus 159 ~~~VsVID~~t~~vv~tI~v~g~--~~----~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~ 232 (386)
T 3sjl_D 159 APAVGVVDLEGKAFKRMLDVPDC--YH----IFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPA 232 (386)
T ss_dssp SCEEEEEETTTTEEEEEEECCSE--EE----EEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCE
T ss_pred CCeEEEEECCCCcEEEEEECCCc--ce----eecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccce
Confidence 57888888888888877754221 11 3344443477888899999999876 5543221111 12221 135
Q ss_pred Ee-cCCCcEEEEEeCCCeEEEEeCCCCCCCCccccc-cce-eeEeeccCCCeEEEEEccCCCEEEEEeC----------C
Q 004214 335 FS-KKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMN-LKA-KAVVAAHGKDINSLAVAPNDSLVCTGSQ----------D 401 (768)
Q Consensus 335 ~~-~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~----------d 401 (768)
|. ++|+ ++-.+.+|.|.+.|+.........+.. ... .....-.......++++|+++.+++... .
T Consensus 233 ~~~~dG~--~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~ 310 (386)
T 3sjl_D 233 YSQKAGR--LVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTAS 310 (386)
T ss_dssp EETTTTE--EEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCE
T ss_pred eEcCCCc--EEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCC
Confidence 54 5543 333666899999998754211100000 000 0000001233445778999888888653 2
Q ss_pred CcEEEEeCCCCceEEEEeccCCCeEEEEEccCCC-EEEEe-eCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeC
Q 004214 402 RTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQ-VVITA-SGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTR 475 (768)
Q Consensus 402 g~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~t~-~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~ 475 (768)
+.|.++|+.+++.+..+.. ...++.++++||++ +|+++ ..++.|.++|..+++.++++... ..-+.+.+++|
T Consensus 311 ~~V~viD~~t~kv~~~i~v-g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~-~~p~~l~~s~d 384 (386)
T 3sjl_D 311 RFVVVLDAKTGERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQL-GHGPQVITTAD 384 (386)
T ss_dssp EEEEEEETTTCCEEEEEEE-EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCC-CSSCCEEEECC
T ss_pred CEEEEEECCCCeEEEEEEC-CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCC-CCCceeEECCc
Confidence 4799999999999988774 34788999999996 66664 45899999999999999998733 33334566655
No 190
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.60 E-value=3.8e-13 Score=137.92 Aligned_cols=278 Identities=9% Similarity=0.056 Sum_probs=177.0
Q ss_pred CcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeee
Q 004214 31 GVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKL 110 (768)
Q Consensus 31 ~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~~~~~~~ 110 (768)
..|.+++|+|++.. ++..+.++.++.| .++....+..+...+.+++|+|+|+.++++..++.|.+||..+++...
T Consensus 6 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~ 80 (333)
T 2dg1_A 6 QDLPTLFYSGKSNS--AVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKR 80 (333)
T ss_dssp CCCCBCCSCGGGGC--SSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE
T ss_pred cccceeeecCCccc--eeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEE
Confidence 45778899998776 6666788899999 566777787777788999999999977788888999999987765332
Q ss_pred eeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcc
Q 004214 111 TVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSK 190 (768)
Q Consensus 111 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 190 (768)
....
T Consensus 81 ~~~~---------------------------------------------------------------------------- 84 (333)
T 2dg1_A 81 PFVS---------------------------------------------------------------------------- 84 (333)
T ss_dssp EEEC----------------------------------------------------------------------------
T ss_pred EeeC----------------------------------------------------------------------------
Confidence 2100
Q ss_pred cceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCC----CcEEE
Q 004214 191 RGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNI----EQVQV 266 (768)
Q Consensus 191 ~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~----~~i~i 266 (768)
....+.++++.+ ++.++++...+ +.|.+
T Consensus 85 -----------------------------------------------~~~~~~~i~~~~-dg~l~v~~~~~~~~~~~i~~ 116 (333)
T 2dg1_A 85 -----------------------------------------------HKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFA 116 (333)
T ss_dssp -----------------------------------------------SSSSEEEEEECT-TSCEEEEECTTSSSCCEEEE
T ss_pred -----------------------------------------------CCCCcceEEECC-CCcEEEEeCCCCCCCceEEE
Confidence 011233333332 33333333333 46677
Q ss_pred EECCCceeeeeee--CCccceEEEeeeeecCCCEEEEEEeC------CCeEEEEeCCCceEEEeeecccCcEEEEEEecC
Q 004214 267 YDLSSMSCSYVLA--GHSEIVLCLDTCALSSGKILIVTGSK------DNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKK 338 (768)
Q Consensus 267 ~d~~~~~~~~~~~--~~~~~v~~l~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~ 338 (768)
||..++.....+. .+...+.++. +.+++.. +++... .+.|..++..+++..... .+...+..++|+|+
T Consensus 117 ~d~~~~~~~~~~~~~~~~~~~~~i~--~d~~g~l-~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~i~~~~d 192 (333)
T 2dg1_A 117 ATENGDNLQDIIEDLSTAYCIDDMV--FDSKGGF-YFTDFRGYSTNPLGGVYYVSPDFRTVTPII-QNISVANGIALSTD 192 (333)
T ss_dssp ECTTSCSCEEEECSSSSCCCEEEEE--ECTTSCE-EEEECCCBTTBCCEEEEEECTTSCCEEEEE-EEESSEEEEEECTT
T ss_pred EeCCCCEEEEEEccCccCCcccceE--ECCCCCE-EEEeccccccCCCceEEEEeCCCCEEEEee-cCCCcccceEECCC
Confidence 7766655442322 2334566665 6666653 444432 356777777665544332 33445788999999
Q ss_pred CCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEE
Q 004214 339 LQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTF 418 (768)
Q Consensus 339 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 418 (768)
++.++++.+.++.|.+|++........ ............+ ..+..++++++|+++++...++.|.+||. +++.+..+
T Consensus 193 g~~l~v~~~~~~~i~~~d~~~~g~~~~-~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~ 269 (333)
T 2dg1_A 193 EKVLWVTETTANRLHRIALEDDGVTIQ-PFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQI 269 (333)
T ss_dssp SSEEEEEEGGGTEEEEEEECTTSSSEE-EEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEE
T ss_pred CCEEEEEeCCCCeEEEEEecCCCcCcc-cccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEE
Confidence 875566666789999999863211000 0000000011111 36788999999998888878899999998 56666666
Q ss_pred eccCC------CeEEEEEccCCCEEEEeeCCC
Q 004214 419 RGHKR------GIWSVEFSPVDQVVITASGDK 444 (768)
Q Consensus 419 ~~~~~------~v~~v~~s~~~~~l~t~~~d~ 444 (768)
..+.. .+.+++|+|+++.|+.++.++
T Consensus 270 ~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 270 LIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp ECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred EcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence 64433 689999999987776655543
No 191
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.60 E-value=9.3e-13 Score=134.25 Aligned_cols=282 Identities=10% Similarity=-0.034 Sum_probs=181.3
Q ss_pred CCCcEEEEECCCCEEEEEEE------cCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEE
Q 004214 8 ADRKVLVWDVDGGFCTHYFK------GHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMA 81 (768)
Q Consensus 8 ~dg~i~vwd~~~~~~~~~l~------gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~ 81 (768)
.++.|.+||..+++....+. ........+++.. .. +.++...++.|.+||..+++.+.++.. ......++
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~--~~-lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~ 90 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRD--GI-GWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYIH 90 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEET--TE-EEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEEE
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEEC--CE-EEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEEE
Confidence 48999999999999765441 1234567888753 33 355566789999999999999988853 45688999
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcE
Q 004214 82 ITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGI 161 (768)
Q Consensus 82 fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 161 (768)
++++++..++...++.|.+||..+++....++..... +
T Consensus 91 ~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~--------~---------------------------------- 128 (328)
T 3dsm_A 91 FLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMD--------M---------------------------------- 128 (328)
T ss_dssp EEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCC--------T----------------------------------
T ss_pred EeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCcc--------c----------------------------------
Confidence 9999854444447899999999988766554421100 0
Q ss_pred EEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCc
Q 004214 162 VRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEE 241 (768)
Q Consensus 162 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (768)
....
T Consensus 129 ----------------------------------------------------------------------------~~~~ 132 (328)
T 3dsm_A 129 ----------------------------------------------------------------------------ESGS 132 (328)
T ss_dssp ----------------------------------------------------------------------------TTCB
T ss_pred ----------------------------------------------------------------------------cCCC
Confidence 0000
Q ss_pred eeEEEEecCCCCEEEEEe-CCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCC----------CeEE
Q 004214 242 ILDLKFLGEEEQYLAVAT-NIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKD----------NSVR 310 (768)
Q Consensus 242 i~~~~~~~~~~~~l~~~~-~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~d----------g~i~ 310 (768)
...+++ .++.++++.. .++.|.+||..+++....+..... ...+. +.++++ +++++..+ +.|.
T Consensus 133 p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~-p~~i~--~~~dG~-l~v~~~~~~~~~~~~~~~~~v~ 206 (328)
T 3dsm_A 133 TEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQ-PTSLV--MDKYNK-MWTITDGGYEGSPYGYEAPSLY 206 (328)
T ss_dssp CCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSC-BCCCE--ECTTSE-EEEEBCCBCTTCSSCBCCCEEE
T ss_pred cceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCC-ccceE--EcCCCC-EEEEECCCccCCccccCCceEE
Confidence 111222 1222222222 367888888888877766654332 23343 445554 35555443 7899
Q ss_pred EEeCCCceEEEeeecc-cCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEc
Q 004214 311 LWDSESRCCVGVGTGH-MGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVA 389 (768)
Q Consensus 311 iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 389 (768)
++|..+++....+... ......++++|+++. ++++.. .|.+||........ .............++++
T Consensus 207 ~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~-lyv~~~--~v~~~d~~t~~~~~--------~~~~~~~~~~p~gi~vd 275 (328)
T 3dsm_A 207 RIDAETFTVEKQFKFKLGDWPSEVQLNGTRDT-LYWINN--DIWRMPVEADRVPV--------RPFLEFRDTKYYGLTVN 275 (328)
T ss_dssp EEETTTTEEEEEEECCTTCCCEEEEECTTSCE-EEEESS--SEEEEETTCSSCCS--------SCSBCCCSSCEEEEEEC
T ss_pred EEECCCCeEEEEEecCCCCCceeEEEecCCCE-EEEEcc--EEEEEECCCCceee--------eeeecCCCCceEEEEEc
Confidence 9999999887666533 236789999998774 555443 89999987543211 00011124568899999
Q ss_pred c-CCCEEEEE----eCCCcEEEEeCCCCceEEEEeccCCCeEEEEE
Q 004214 390 P-NDSLVCTG----SQDRTACVWRLPDLVSVVTFRGHKRGIWSVEF 430 (768)
Q Consensus 390 ~-~~~~l~~~----~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~ 430 (768)
| ++.++++. ..++.|.+||.. ++.+..+.. ......++|
T Consensus 276 p~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~-G~~P~~~~~ 319 (328)
T 3dsm_A 276 PNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYV-GIIPGAFCW 319 (328)
T ss_dssp TTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEE-EESEEEEEE
T ss_pred CCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEe-ccCcceEEE
Confidence 9 55566665 568899999998 888887763 333345554
No 192
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.58 E-value=5.4e-10 Score=128.70 Aligned_cols=447 Identities=8% Similarity=0.001 Sum_probs=265.2
Q ss_pred CCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCcc-c---eeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004214 30 KGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHF-S---RVTSMAITSDGSTLISAGRDKVVNLWDLRD 105 (768)
Q Consensus 30 ~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~-~---~V~~l~fs~d~~~L~s~~~dg~i~vWd~~~ 105 (768)
...|.+|...++|. |-.|+.+| +..||..+++... +.... . .|.++...++|...+. +. +.|..||..+
T Consensus 87 ~n~I~~i~~d~~g~---lWigT~~G-l~~yd~~~~~f~~-~~~~~~~~~~~i~~i~~d~~g~lwi~-t~-~gl~~~~~~~ 159 (795)
T 4a2l_A 87 NDISRIVKTDSQGR---VWIGTRDG-LSRYDEEKDIFQN-FFYEKNGKHLQVNGIEEISPEQLLIS-TP-EGLIMFDIKE 159 (795)
T ss_dssp CSCEEEEEECTTSC---EEEEESSC-EEEEETTTTEEEE-ECCEETTEECCCCEEEEEETTEEEEE-ET-TEEEEEETTT
T ss_pred ccceeEEEECCCCC---EEEEeCCc-hheeCCCCCeEEe-ccccccCCCceEEEEEECCCCCEEEE-EC-CceEEEECCC
Confidence 45799999988876 55566666 8999988776433 32211 1 2889998888866554 44 4588999877
Q ss_pred Ceeeeeeec--cee-EeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceee
Q 004214 106 YSCKLTVPT--YEM-VEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTI 182 (768)
Q Consensus 106 ~~~~~~~~~--~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~ 182 (768)
++....... ... +..+...+++ .+..++.++.|..|+..++........
T Consensus 160 ~~~~~~~~~~~~~~~i~~i~~d~~g------------------------~lwigt~~~Gl~~~~~~~~~~~~~~~~---- 211 (795)
T 4a2l_A 160 SKFIDDSFSTAMHKTIASTLYRQGD------------------------QIYIGTSTDGLYTYSITQKTFEKVIPI---- 211 (795)
T ss_dssp TEEECSSSCHHHHTCCEEEEEEETT------------------------EEEEEESSSCEEEEETTTCCEEECC------
T ss_pred CEEEeccCCCCCCcceEEEEECCCC------------------------CEEEEECCCCEEEEeCCCCeEEEecCC----
Confidence 654321110 001 2333333222 344455554578888776643221100
Q ss_pred cccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCC
Q 004214 183 SFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIE 262 (768)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~ 262 (768)
.....+..+...+ ...+.+++.++.+..|+..................-....|.++...+ ...+.+|+..
T Consensus 212 -----~~~~~i~~i~~d~-~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~--~g~lWigt~~- 282 (795)
T 4a2l_A 212 -----LGTKQIQAILQQS-PTRIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDS--QNRLWIGTFN- 282 (795)
T ss_dssp -------CCCEEEEEEEE-TTEEEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECT--TSCEEEEESS-
T ss_pred -----CCCCeeEEEEEcC-CCCEEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcC--CCCEEEEeCC-
Confidence 0112333333333 445666776666888876543211000000000011234577776643 3456667765
Q ss_pred cEEEEECCCceeeeeeeC-------CccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeee------cccCc
Q 004214 263 QVQVYDLSSMSCSYVLAG-------HSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGT------GHMGA 329 (768)
Q Consensus 263 ~i~i~d~~~~~~~~~~~~-------~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------~~~~~ 329 (768)
.|.+|+..++........ ....|.++. .... +. +..|+.++-|..|+..++....... .....
T Consensus 283 Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~--~D~~-g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~ 358 (795)
T 4a2l_A 283 DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIF--MDSQ-GG-MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNV 358 (795)
T ss_dssp CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEE--ECTT-SC-EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSS
T ss_pred hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEE--EeCC-cC-EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCe
Confidence 689999887765543221 235677774 3343 44 7788888889999876654322211 12456
Q ss_pred EEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEe-eccCCCeEEEEEccCCCEEEEEeCCCcEEEEe
Q 004214 330 VGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVV-AAHGKDINSLAVAPNDSLVCTGSQDRTACVWR 408 (768)
Q Consensus 330 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d 408 (768)
|.++...+++. +..|+.++-|..|+......... ........ ......|.+++..++|+.|.+|+.++-|..||
T Consensus 359 V~~i~~d~~g~--lWiGt~~~Gl~~~~~~~~~~~~~---~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d 433 (795)
T 4a2l_A 359 VSCIVEDKDKN--LWIGTNDGGLNLYNPITQRFTSY---TLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILH 433 (795)
T ss_dssp EEEEEECTTSC--EEEEESSSCEEEECTTTCCEEEE---CCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEE
T ss_pred eEEEEECCCCC--EEEEECCCCeEEEcCCCCcEEEE---ecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEe
Confidence 99999888865 66788887899998764311000 00000000 01235789999999988677788877899999
Q ss_pred CCCCceEEEEe----ccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEee------cCCCcEEEEEEEeCCCE
Q 004214 409 LPDLVSVVTFR----GHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFE------GHTSSVLRASFLTRGAQ 478 (768)
Q Consensus 409 ~~~~~~~~~~~----~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~------~~~~~v~~~~~s~~~~~ 478 (768)
..+++...... .....|.++...++|++.+... +-+.+||..+++...... -+...|.++...++|+.
T Consensus 434 ~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~--~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~l 511 (795)
T 4a2l_A 434 RNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL--SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRL 511 (795)
T ss_dssp TTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES--SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCE
T ss_pred CCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec--CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCE
Confidence 88775433221 1345789999998888666554 458899987765433221 12357888988888876
Q ss_pred EEEEeCCCcEEEEECCCCeEEEEec-------cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 004214 479 IVSCGADGLVKLWTVRTGECIATYD-------KHEDKIWALAVGKKTEMFATGGSDALVNLWHDST 537 (768)
Q Consensus 479 l~s~~~dg~i~iwd~~~~~~~~~~~-------~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~ 537 (768)
.+... +-|..|+..+++. .+. .+...|.++...++|..+++.. .| |..|+..+
T Consensus 512 Wigt~--~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~G-l~~~d~~~ 571 (795)
T 4a2l_A 512 WIGGE--EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-EG-FYCFNEKD 571 (795)
T ss_dssp EEEES--SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-SC-EEEEETTT
T ss_pred EEEeC--CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-CC-ceeECCCC
Confidence 66544 4588899887766 332 1345799999999999777654 34 67788654
No 193
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.58 E-value=1.2e-12 Score=131.74 Aligned_cols=237 Identities=9% Similarity=-0.018 Sum_probs=168.8
Q ss_pred CCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCce
Q 004214 239 NEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC 318 (768)
Q Consensus 239 ~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 318 (768)
.....+++|.+.+..+++++..++.|..|+..++ ...+..+...+.++. +.+++. ++++...++.|.+||..+++
T Consensus 27 ~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~--~~~dg~-l~v~~~~~~~i~~~d~~~g~ 101 (296)
T 3e5z_A 27 FTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHC--LNKQGH-LIACSHGLRRLERQREPGGE 101 (296)
T ss_dssp CSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEE--ECTTCC-EEEEETTTTEEEEECSTTCC
T ss_pred CccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceee--ECCCCc-EEEEecCCCeEEEEcCCCCc
Confidence 3445678888755558888889999999999987 556666777788886 666665 46666667899999998877
Q ss_pred EEEeeecc----cCcEEEEEEecCCCcEEEEE----e-------------CCCeEEEEeCCCCCCCCccccccceeeEee
Q 004214 319 CVGVGTGH----MGAVGAVAFSKKLQNFLVSG----S-------------SDHTIKVWSFDGLSDDAEQPMNLKAKAVVA 377 (768)
Q Consensus 319 ~~~~~~~~----~~~v~~~~~~~~~~~~l~s~----~-------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 377 (768)
........ ...+..++++|+|. ++++. + ..+.|..++.. + ......
T Consensus 102 ~~~~~~~~~~~~~~~~~~i~~d~~G~-l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g-----------~~~~~~ 168 (296)
T 3e5z_A 102 WESIADSFEGKKLNSPNDVCLAPDGS-LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-G-----------TLSAPI 168 (296)
T ss_dssp EEEEECEETTEECCCCCCEEECTTSC-EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-S-----------CEEEEE
T ss_pred EEEEeeccCCCCCCCCCCEEECCCCC-EEEECCccccccccccccccccCCCcEEEEECCC-C-----------CEEEee
Confidence 55443321 23456799999976 66653 2 12345444433 1 122233
Q ss_pred ccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC-CCce---EEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCC
Q 004214 378 AHGKDINSLAVAPNDSLVCTGSQDRTACVWRLP-DLVS---VVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISD 453 (768)
Q Consensus 378 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~-~~~~---~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~ 453 (768)
.+......++|+|+++.+++.+.++.|.+|++. ++.. ...+..+...+..++++++|+++++. ++.|.+||..
T Consensus 169 ~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~- 245 (296)
T 3e5z_A 169 RDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD- 245 (296)
T ss_dssp CCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-
T ss_pred cCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-
Confidence 455667899999999998777778999999986 4544 23333345567789999999977766 7889999985
Q ss_pred CceeEEeecCCCcEEEEEE-EeCCCEEEEEeCCCcEEEEECCCCeE
Q 004214 454 GSCLKTFEGHTSSVLRASF-LTRGAQIVSCGADGLVKLWTVRTGEC 498 (768)
Q Consensus 454 ~~~~~~~~~~~~~v~~~~~-s~~~~~l~s~~~dg~i~iwd~~~~~~ 498 (768)
++.+..+..+.. +++++| .|+++.|++++.++ +.-++..+.+.
T Consensus 246 g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~~~ 289 (296)
T 3e5z_A 246 GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNVRGL 289 (296)
T ss_dssp SCEEEEEECSSC-CCEEEEESTTSCEEEEEETTE-EEEEECSCCBC
T ss_pred CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCe-EEEEEcccccc
Confidence 888888887777 999999 48899999888765 44556655543
No 194
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.58 E-value=9.4e-10 Score=126.70 Aligned_cols=469 Identities=9% Similarity=0.055 Sum_probs=274.3
Q ss_pred CcEEEEECCCCEEEEEEEcCC-C---cEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCcc-ce-eEEEEEc
Q 004214 10 RKVLVWDVDGGFCTHYFKGHK-G---VVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHF-SR-VTSMAIT 83 (768)
Q Consensus 10 g~i~vwd~~~~~~~~~l~gh~-~---~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~-~~-V~~l~fs 83 (768)
+-+..||..+++... +..+. . .|.++...++|. +..++.+ .|..||..+++......++. .. |.++...
T Consensus 107 ~Gl~~yd~~~~~f~~-~~~~~~~~~~~i~~i~~d~~g~---lwi~t~~-gl~~~~~~~~~~~~~~~~~~~~~~i~~i~~d 181 (795)
T 4a2l_A 107 DGLSRYDEEKDIFQN-FFYEKNGKHLQVNGIEEISPEQ---LLISTPE-GLIMFDIKESKFIDDSFSTAMHKTIASTLYR 181 (795)
T ss_dssp SCEEEEETTTTEEEE-ECCEETTEECCCCEEEEEETTE---EEEEETT-EEEEEETTTTEEECSSSCHHHHTCCEEEEEE
T ss_pred CchheeCCCCCeEEe-ccccccCCCceEEEEEECCCCC---EEEEECC-ceEEEECCCCEEEeccCCCCCCcceEEEEEC
Confidence 448899998876433 33221 1 188999888876 3344444 48999987766433222221 23 8889888
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeeeeeee--cceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcE
Q 004214 84 SDGSTLISAGRDKVVNLWDLRDYSCKLTVP--TYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGI 161 (768)
Q Consensus 84 ~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 161 (768)
+++...+ ++.++.|..|+..+++...... ....+.++...+.+ .+..++.++.
T Consensus 182 ~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g------------------------~lwigt~~~G 236 (795)
T 4a2l_A 182 QGDQIYI-GTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPT------------------------RIWVATEGAG 236 (795)
T ss_dssp ETTEEEE-EESSSCEEEEETTTCCEEECC----CCCEEEEEEEETT------------------------EEEEEEBSSC
T ss_pred CCCCEEE-EECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCC------------------------CEEEEECCCC
Confidence 8886554 5555458899987765433211 11223333333332 3445554445
Q ss_pred EEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCc
Q 004214 162 VRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEE 241 (768)
Q Consensus 162 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (768)
+..|+..++.......... .........+..+...+ ...+.+++.+ .+.+|+..................-....
T Consensus 237 l~~~~~~~~~~~~~~~~~~---~~~~l~~~~i~~i~~d~-~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~ 311 (795)
T 4a2l_A 237 LFLINPKTKEIKNYLHSPS---NPKSISSNYIRSLAMDS-QNRLWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRS 311 (795)
T ss_dssp EEEEETTTTEEEEECCCTT---CTTSCSCSBEEEEEECT-TSCEEEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSC
T ss_pred eEEEeCCCCeEEEeecCCC---CccccCCCeEEEEEEcC-CCCEEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCc
Confidence 8888887764432211100 00001123344444433 4456666655 67777754332100000000000112345
Q ss_pred eeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeee------CCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCC
Q 004214 242 ILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLA------GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSE 315 (768)
Q Consensus 242 i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~------~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~ 315 (768)
|.++... ....+.+|+.++-|..|+..+........ .....|.++. ...+ +. |..|+.++-|..|+..
T Consensus 312 i~~i~~D--~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~--~d~~-g~-lWiGt~~~Gl~~~~~~ 385 (795)
T 4a2l_A 312 VRSIFMD--SQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIV--EDKD-KN-LWIGTNDGGLNLYNPI 385 (795)
T ss_dssp EEEEEEC--TTSCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEE--ECTT-SC-EEEEESSSCEEEECTT
T ss_pred EEEEEEe--CCcCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEE--ECCC-CC-EEEEECCCCeEEEcCC
Confidence 7777664 34467788888889999876654332211 1234577774 3343 44 7778888889999988
Q ss_pred CceEEEeeec--------ccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEE
Q 004214 316 SRCCVGVGTG--------HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLA 387 (768)
Q Consensus 316 ~~~~~~~~~~--------~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 387 (768)
++........ ....|.+++..+++. +|..|+.++-+..||........... . . .......|.++.
T Consensus 386 ~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-~lWigt~~~Gl~~~d~~~~~~~~~~~-~-~----~~l~~~~v~~i~ 458 (795)
T 4a2l_A 386 TQRFTSYTLQEDESARGIGSNNIKAVYVDEKKS-LVYIGTHAGGLSILHRNSGQVENFNQ-R-N----SQLVNENVYAIL 458 (795)
T ss_dssp TCCEEEECCC------CCSCSCEEEEEEETTTT-EEEEEETTTEEEEEETTTCCEEEECT-T-T----SCCSCSCEEEEE
T ss_pred CCcEEEEecCCCCcccCCCCccEEEEEEcCCCC-EEEEEeCcCceeEEeCCCCcEEEeec-C-C----CCcCCCeeEEEE
Confidence 7765443211 246789999888754 46778887889999876432100000 0 0 002345789999
Q ss_pred EccCCCEEEEEeCCCcEEEEeCCCCceEEEEec------cCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEee
Q 004214 388 VAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG------HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFE 461 (768)
Q Consensus 388 ~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~------~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~ 461 (768)
..++|.+.+. +. +-+.+||..+++....... ....|.++...++|++.+... +-+..||..++.. .+.
T Consensus 459 ~d~~g~lwig-t~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~~~--~~~ 532 (795)
T 4a2l_A 459 PDGEGNLWLG-TL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGLDI--QKA 532 (795)
T ss_dssp ECSSSCEEEE-ES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEETTEE--EEC
T ss_pred ECCCCCEEEE-ec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC--CceEEEeCCCCeE--EEe
Confidence 9988876554 44 4588999877654332111 235789999999898766554 4588899877665 332
Q ss_pred -------cCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEec---c-CCCcEEEEEEcCCCCEEEEEeCCCcE
Q 004214 462 -------GHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD---K-HEDKIWALAVGKKTEMFATGGSDALV 530 (768)
Q Consensus 462 -------~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~-~~~~v~~l~~s~~~~~l~s~~~dg~v 530 (768)
.+...|.++...++|+..++.. . -|..||..+++... +. + ....|.++...++|.+++++ ..| |
T Consensus 533 ~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d~~~~~~~~-~~~~~gl~~~~i~~i~~d~~g~lWi~t-~~G-l 607 (795)
T 4a2l_A 533 SILPVSNVTKLFTNCIYEASNGIIWVGTR-E-GFYCFNEKDKQIKR-YNTTNGLPNNVVYGILEDSFGRLWLST-NRG-I 607 (795)
T ss_dssp CCSCSCGGGGSCEEEEEECTTSCEEEEES-S-CEEEEETTTTEEEE-ECGGGTCSCSCEEEEEECTTSCEEEEE-TTE-E
T ss_pred cCCCCCCCCCCeeEEEEECCCCCEEEEeC-C-CceeECCCCCcEEE-eCCCCCCchhheEEEEECCCCCEEEEc-CCc-e
Confidence 1345788888888888665444 3 48889987765443 32 1 23468999999999887766 344 6
Q ss_pred EEEEcCC
Q 004214 531 NLWHDST 537 (768)
Q Consensus 531 ~vw~~~~ 537 (768)
..|+..+
T Consensus 608 ~~~~~~~ 614 (795)
T 4a2l_A 608 SCFNPET 614 (795)
T ss_dssp EEEETTT
T ss_pred EEEcCCC
Confidence 7777654
No 195
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.57 E-value=1.9e-12 Score=147.27 Aligned_cols=184 Identities=8% Similarity=-0.028 Sum_probs=122.2
Q ss_pred CcEEEEECCCceee--eeeeC--CccceEEEeeeeecCCCEEEEEEeC----CCeEEEEeCCC------ce-EEEeeecc
Q 004214 262 EQVQVYDLSSMSCS--YVLAG--HSEIVLCLDTCALSSGKILIVTGSK----DNSVRLWDSES------RC-CVGVGTGH 326 (768)
Q Consensus 262 ~~i~i~d~~~~~~~--~~~~~--~~~~v~~l~~~~~~~~~~~l~~~~~----dg~i~iwd~~~------~~-~~~~~~~~ 326 (768)
..|++|++.++... ..+.. |...+..+. ++++++.++++... +..|++||+.+ +. ....+..+
T Consensus 208 ~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~--~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~ 285 (710)
T 2xdw_A 208 QKLYYHVLGTDQSEDILCAEFPDEPKWMGGAE--LSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDN 285 (710)
T ss_dssp CEEEEEETTSCGGGCEEEECCTTCTTCEEEEE--ECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECS
T ss_pred CEEEEEECCCCcccceEEeccCCCCeEEEEEE--EcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCC
Confidence 45888888776532 22222 344455665 77888874444431 56899999976 42 34445556
Q ss_pred cCcEEEEEEecCCCcEEEEEeCC---CeEEEEeCCCCCCCCccccccceeeEeeccCC--CeEEEEEccCCCEEEEEeCC
Q 004214 327 MGAVGAVAFSKKLQNFLVSGSSD---HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGK--DINSLAVAPNDSLVCTGSQD 401 (768)
Q Consensus 327 ~~~v~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~s~~~~~l~~~~~d 401 (768)
...+.. .|+|+|..+++.+..+ +.|.+||+..... .....+..|.. .+..++|++++.++++...+
T Consensus 286 ~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~--------~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~ 356 (710)
T 2xdw_A 286 FEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEE--------SKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHD 356 (710)
T ss_dssp SSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCG--------GGCEEEECCCSSCEEEEEEEETTTEEEEEEEET
T ss_pred CCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCc--------ccceeccCCCCCCeEEEEEEEcCCEEEEEEEEC
Confidence 555554 4788887655555443 3699999875310 01122233333 57789999888888888888
Q ss_pred Cc--EEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEee----CCCcEEEEeCCCCce
Q 004214 402 RT--ACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITAS----GDKTIKIWSISDGSC 456 (768)
Q Consensus 402 g~--i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~----~d~~i~iwd~~~~~~ 456 (768)
+. |.+|++.+++.+..+..+...+..+.++|++..++... ..++|++||+.+++.
T Consensus 357 g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 417 (710)
T 2xdw_A 357 VKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEEL 417 (710)
T ss_dssp TEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSC
T ss_pred CEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCcc
Confidence 84 66678777887788887878889999999987665332 357899999988773
No 196
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.57 E-value=2.2e-12 Score=127.23 Aligned_cols=241 Identities=7% Similarity=0.012 Sum_probs=177.8
Q ss_pred CCCEEEEEeCCCcEEEEECCCceeeeeeeCCc-cceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeeccc-C
Q 004214 251 EEQYLAVATNIEQVQVYDLSSMSCSYVLAGHS-EIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHM-G 328 (768)
Q Consensus 251 ~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~-~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~ 328 (768)
.++++++++.++.|++||.++++.+..+..+. ..+.++. +.++++. ++ +.++.|..||. +++.+..+..+. .
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~--~~pdG~i-lv--s~~~~V~~~d~-~G~~~W~~~~~~~~ 77 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVA--ATKAGEI-LF--SYSKGAKMITR-DGRELWNIAAPAGC 77 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEE--ECTTSCE-EE--ECBSEEEEECT-TSCEEEEEECCTTC
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeE--ECCCCCE-EE--eCCCCEEEECC-CCCEEEEEcCCCCc
Confidence 45788899999999999999999999988765 3566665 6666664 55 45788999999 788888887653 5
Q ss_pred cEEEEEEecCCCcEEEEEeC-CCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEE
Q 004214 329 AVGAVAFSKKLQNFLVSGSS-DHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVW 407 (768)
Q Consensus 329 ~v~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~ 407 (768)
.+.++.+.++|. ++++.+. ++.|..++.... ..... ........+......+++.++|+++++...++.|..|
T Consensus 78 ~~~~~~~~~dG~-~lv~~~~~~~~v~~vd~~Gk-~l~~~----~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~ 151 (276)
T 3no2_A 78 EMQTARILPDGN-ALVAWCGHPSTILEVNMKGE-VLSKT----EFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREI 151 (276)
T ss_dssp EEEEEEECTTSC-EEEEEESTTEEEEEECTTSC-EEEEE----EECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEE
T ss_pred cccccEECCCCC-EEEEecCCCCEEEEEeCCCC-EEEEE----eccCCCCcccccccCceECCCCCEEEEecCCCEEEEE
Confidence 788999999977 6777666 777777765321 00000 0000001122345566789999999999999999999
Q ss_pred eCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCC------CcEEEEEEEeCCCEEEE
Q 004214 408 RLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHT------SSVLRASFLTRGAQIVS 481 (768)
Q Consensus 408 d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~------~~v~~~~~s~~~~~l~s 481 (768)
|.. ++.+..+... ..+.++.+.++|+++++++.++.|..+|..+|+.+.++..+. ..+..++..++|+.+++
T Consensus 152 d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~ 229 (276)
T 3no2_A 152 APN-GQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYIC 229 (276)
T ss_dssp CTT-SCEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEE
T ss_pred CCC-CCEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEE
Confidence 988 9999888764 456678889999999999988899999999999999987432 23788888999998888
Q ss_pred EeCC--------CcEEEEEC-CCCeEEEEeccC
Q 004214 482 CGAD--------GLVKLWTV-RTGECIATYDKH 505 (768)
Q Consensus 482 ~~~d--------g~i~iwd~-~~~~~~~~~~~~ 505 (768)
.... +..+++.+ .+|+.+.++..+
T Consensus 230 ~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~ 262 (276)
T 3no2_A 230 NWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDK 262 (276)
T ss_dssp EECTTCTTGGGSCCCSEEEECTTSBEEEEECCT
T ss_pred eccCccccccccCCceEEEECCCCCEEEEecCc
Confidence 7421 23456666 578888777643
No 197
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.56 E-value=3.1e-13 Score=153.22 Aligned_cols=179 Identities=9% Similarity=-0.037 Sum_probs=117.6
Q ss_pred CeEEEEeCCCce----EEEeeecccCcEEEEEEecCCCcEEEEEeCC-C--eEEEEeCCCCCCCCccccccceeeEeecc
Q 004214 307 NSVRLWDSESRC----CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSD-H--TIKVWSFDGLSDDAEQPMNLKAKAVVAAH 379 (768)
Q Consensus 307 g~i~iwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 379 (768)
..|++|++.++. ++.....|...+..+.|+|+|+.++++...+ + .|.+|+...+ ....+..+
T Consensus 202 ~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~-----------~~~~l~~~ 270 (695)
T 2bkl_A 202 TTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEK-----------DFRLLVKG 270 (695)
T ss_dssp CEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCS-----------SCEEEEEC
T ss_pred CEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCC-----------ceEEeecC
Confidence 348899988765 3444445667889999999988544444333 3 4555543211 12223334
Q ss_pred CCCeEEEEEccCCCEEEEEe---CCCcEEEEeCCCCce--EEEEecc--CCCeEEEEEccCCCEEEEeeCCCcEEEEeCC
Q 004214 380 GKDINSLAVAPNDSLVCTGS---QDRTACVWRLPDLVS--VVTFRGH--KRGIWSVEFSPVDQVVITASGDKTIKIWSIS 452 (768)
Q Consensus 380 ~~~i~~~~~s~~~~~l~~~~---~dg~i~i~d~~~~~~--~~~~~~~--~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~ 452 (768)
...+....+ ++|.+++.+. .++.|.+||+.++.. ...+..+ ...+..++|+ ++.++++...|+..+||.+.
T Consensus 271 ~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~ 348 (695)
T 2bkl_A 271 VGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVAT 348 (695)
T ss_dssp SSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEE
T ss_pred CCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEe
Confidence 445555556 6666444433 257899999987653 2333333 4568888998 67888999999988888654
Q ss_pred -CCceeEEeecC-CCcEEEEEEEeCCCEEEEEe----CCCcEEEEECCCCeE
Q 004214 453 -DGSCLKTFEGH-TSSVLRASFLTRGAQIVSCG----ADGLVKLWTVRTGEC 498 (768)
Q Consensus 453 -~~~~~~~~~~~-~~~v~~~~~s~~~~~l~s~~----~dg~i~iwd~~~~~~ 498 (768)
++.....+..+ ...+..+.++|+++.++... ..++|++||+.+++.
T Consensus 349 ~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 349 LKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp TTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred CCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 46666777655 66778888999998776332 347899999988764
No 198
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.55 E-value=2.7e-13 Score=153.72 Aligned_cols=275 Identities=8% Similarity=-0.068 Sum_probs=179.2
Q ss_pred CCCEEEEEeCC-----CcEEEEECCCceeeeeee------CCccceEEEeeeeecCCCEEEEEEeC----CCeEEEEeCC
Q 004214 251 EEQYLAVATNI-----EQVQVYDLSSMSCSYVLA------GHSEIVLCLDTCALSSGKILIVTGSK----DNSVRLWDSE 315 (768)
Q Consensus 251 ~~~~l~~~~~~-----~~i~i~d~~~~~~~~~~~------~~~~~v~~l~~~~~~~~~~~l~~~~~----dg~i~iwd~~ 315 (768)
++.+++....+ +.+.+.+...+.....+. +|...+.++. ++|+++.++++.+. +..|++||+.
T Consensus 78 dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~--~SPDG~~la~~~~~~G~~~~~i~v~dl~ 155 (695)
T 2bkl_A 78 RNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWA--VSWDGKKVAFAQKPNAADEAVLHVIDVD 155 (695)
T ss_dssp ETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEE--ECTTSSEEEEEEEETTCSCCEEEEEETT
T ss_pred ECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEE--ECCCCCEEEEEECCCCCceEEEEEEECC
Confidence 44555544432 234445544444333332 3555677776 77888874444433 4589999999
Q ss_pred CceEEEeeecccCcE--EEEEEecCCCcEEEEEeCCCe-------------EEEEeCCCCCCCCccccccceeeEeeccC
Q 004214 316 SRCCVGVGTGHMGAV--GAVAFSKKLQNFLVSGSSDHT-------------IKVWSFDGLSDDAEQPMNLKAKAVVAAHG 380 (768)
Q Consensus 316 ~~~~~~~~~~~~~~v--~~~~~~~~~~~~l~s~~~dg~-------------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 380 (768)
+++.+. ..+...+ ..++|+|+|+ .|+.++.|.. |++|++.+.... .........+.
T Consensus 156 tg~~~~--~~~~~~~~~~~~~wspDg~-~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~------~~lv~~~~~~~ 226 (695)
T 2bkl_A 156 SGEWSK--VDVIEGGKYATPKWTPDSK-GFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSK------DTVVHERTGDP 226 (695)
T ss_dssp TCCBCS--SCCBSCCTTCCCEECTTSS-EEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGG------CEEEECCCCCT
T ss_pred CCCCcC--CcccCcccccceEEecCCC-EEEEEEecCCCCCccccCCCCCEEEEEECCCCchh------ceEEEecCCCC
Confidence 987651 1122222 6789999987 5777777665 999998754210 01111222344
Q ss_pred CCeEEEEEccCCCEEEEEeCCC----cEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEee---CCCcEEEEeCCC
Q 004214 381 KDINSLAVAPNDSLVCTGSQDR----TACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITAS---GDKTIKIWSISD 453 (768)
Q Consensus 381 ~~i~~~~~s~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~---~d~~i~iwd~~~ 453 (768)
..+.++.|+|||++|+.++.++ .|.+|+..++. ...+..+...+....+ ++|.+++.+. .++.|.+||+.+
T Consensus 227 ~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~ 304 (695)
T 2bkl_A 227 TTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD-FRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAK 304 (695)
T ss_dssp TCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS-CEEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTB
T ss_pred EEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc-eEEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCC
Confidence 6788999999999998887666 67777766554 3445556666666666 5666444443 258899999988
Q ss_pred Cce--eEEeecC--CCcEEEEEEEeCCCEEEEEeCCCcEEEEECC-CCeEEEEeccC-CCcEEEEEEcCCCCEEEEE---
Q 004214 454 GSC--LKTFEGH--TSSVLRASFLTRGAQIVSCGADGLVKLWTVR-TGECIATYDKH-EDKIWALAVGKKTEMFATG--- 524 (768)
Q Consensus 454 ~~~--~~~~~~~--~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~-~~~v~~l~~s~~~~~l~s~--- 524 (768)
+.. ...+..+ ...+..+.|+ ++.++++...|+..+||.+. +++....+..+ .+.+..++++|++..++..
T Consensus 305 ~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss 383 (695)
T 2bkl_A 305 PARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTS 383 (695)
T ss_dssp CSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEE
T ss_pred CCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcC
Confidence 763 2344333 4567888888 67788888999988888665 46666666655 6678888999999877733
Q ss_pred -eCCCcEEEEEcCCHH
Q 004214 525 -GSDALVNLWHDSTAA 539 (768)
Q Consensus 525 -~~dg~v~vw~~~~~~ 539 (768)
...+.|++|++.+++
T Consensus 384 ~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 384 FTTPRQIYKTSVSTGK 399 (695)
T ss_dssp TTEEEEEEEEETTTCC
T ss_pred CCCCCEEEEEECCCCc
Confidence 235789999987754
No 199
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.55 E-value=6.5e-11 Score=119.01 Aligned_cols=282 Identities=8% Similarity=-0.015 Sum_probs=176.9
Q ss_pred EEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEE-EecCccceeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 004214 26 FKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVA-TLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLR 104 (768)
Q Consensus 26 l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~-~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~ 104 (768)
+..+...+.++++.|+|+. .++...++.|.+||.. ++... .+..+...+.+++++++|..+++...++.|..||..
T Consensus 10 ~~~~~~~~~~i~~d~~g~l--~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~ 86 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGKV--WITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK 86 (299)
T ss_dssp CCSSSCCEEEEEECTTSCE--EEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred CCCcCCCccceEECCCCCE--EEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC
Confidence 4456678999999999874 5555557899999988 55433 223355679999999999988877777888888865
Q ss_pred CCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeecc
Q 004214 105 DYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISF 184 (768)
Q Consensus 105 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~ 184 (768)
++. ..+.. +.
T Consensus 87 -g~~-~~~~~----------~~---------------------------------------------------------- 96 (299)
T 2z2n_A 87 -GII-KEYTL----------PN---------------------------------------------------------- 96 (299)
T ss_dssp -SCE-EEEEC----------SS----------------------------------------------------------
T ss_pred -CcE-EEEeC----------CC----------------------------------------------------------
Confidence 221 11100 00
Q ss_pred cccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcE
Q 004214 185 EMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQV 264 (768)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i 264 (768)
....+..+++.+ ++.++++...++.|
T Consensus 97 -----------------------------------------------------~~~~~~~i~~~~-~g~l~v~~~~~~~i 122 (299)
T 2z2n_A 97 -----------------------------------------------------PDSAPYGITEGP-NGDIWFTEMNGNRI 122 (299)
T ss_dssp -----------------------------------------------------TTCCEEEEEECT-TSCEEEEETTTTEE
T ss_pred -----------------------------------------------------cCCCceeeEECC-CCCEEEEecCCceE
Confidence 001122333332 33344444445566
Q ss_pred EEEECCCceeee-eeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEe-eecccCcEEEEEEecCCCcE
Q 004214 265 QVYDLSSMSCSY-VLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGV-GTGHMGAVGAVAFSKKLQNF 342 (768)
Q Consensus 265 ~i~d~~~~~~~~-~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~ 342 (768)
..||. ++.... ....+...+.++. ..+++. +.++...++.|..||. +++.... ...+...+.++++.+++. +
T Consensus 123 ~~~d~-~g~~~~~~~~~~~~~~~~i~--~~~~g~-l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~-l 196 (299)
T 2z2n_A 123 GRITD-DGKIREYELPNKGSYPSFIT--LGSDNA-LWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDA-L 196 (299)
T ss_dssp EEECT-TCCEEEEECSSTTCCEEEEE--ECTTSC-EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSS-E
T ss_pred EEECC-CCCEEEecCCCCCCCCceEE--EcCCCC-EEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCC-E
Confidence 66666 333222 1222334566665 555554 3565666789999999 6655443 333455688999999866 6
Q ss_pred EEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEE--ec
Q 004214 343 LVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTF--RG 420 (768)
Q Consensus 343 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~ 420 (768)
+++...++.|..|+. .+. . .......+...+.+++++++|+++++...++.|..||. ++.. ..+ ..
T Consensus 197 ~v~~~~~~~i~~~~~-~g~--------~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~-~~~~~~~ 264 (299)
T 2z2n_A 197 WFVEIIGNKIGRITT-SGE--------I-TEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNII-EEYPIQI 264 (299)
T ss_dssp EEEETTTTEEEEECT-TCC--------E-EEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEE-EEEECSS
T ss_pred EEEccCCceEEEECC-CCc--------E-EEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCce-EEEeCCC
Confidence 666666889999987 321 0 11111234467899999999987776667789999998 4433 333 34
Q ss_pred cCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCC
Q 004214 421 HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG 454 (768)
Q Consensus 421 ~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~ 454 (768)
+...+.++++ +++++.++.. .+.+..++..++
T Consensus 265 ~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~ 296 (299)
T 2z2n_A 265 KSAEPHGICF-DGETIWFAME-CDKIGKLTLIKD 296 (299)
T ss_dssp SSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC--
T ss_pred CCCccceEEe-cCCCEEEEec-CCcEEEEEcCcc
Confidence 4567899999 8888777765 467777777654
No 200
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.53 E-value=6.9e-12 Score=127.13 Aligned_cols=281 Identities=13% Similarity=0.036 Sum_probs=183.6
Q ss_pred CCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEE--------eCCCcEEEEECCCCeeEEEecCcc------
Q 004214 9 DRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSG--------SDDATVRVWDLLAKKCVATLDKHF------ 74 (768)
Q Consensus 9 dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg--------~~dg~I~iWd~~~~~~~~~l~~h~------ 74 (768)
++.|.+.|..+++.+..+.....+ . ++++|||++.+++.. ..++.|.+||..+++.+.++.-..
T Consensus 58 ~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~ 135 (386)
T 3sjl_D 58 VTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLV 135 (386)
T ss_dssp SEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCB
T ss_pred CCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCcccccc
Confidence 679999999999999998865555 4 999999998555542 246789999999999998875321
Q ss_pred -ceeEEEEEcCCCCEEEEEeC--CCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcce
Q 004214 75 -SRVTSMAITSDGSTLISAGR--DKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEI 151 (768)
Q Consensus 75 -~~V~~l~fs~d~~~L~s~~~--dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (768)
.....++|+|||++|+.+.. ++.|.++|+.+++.+.+++.... ....|.+. .
T Consensus 136 g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~---~~~~P~g~----------------------~ 190 (386)
T 3sjl_D 136 GTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC---YHIFPTAP----------------------D 190 (386)
T ss_dssp SCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEEET----------------------T
T ss_pred CCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc---ceeecCCC----------------------c
Confidence 24667999999999998864 68999999999999999876432 11222221 2
Q ss_pred EEEEeeCCcEEEEEEcCC-ceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeE
Q 004214 152 HFITVGERGIVRMWNADS-ACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELI 230 (768)
Q Consensus 152 ~~~~~~~~g~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~ 230 (768)
.+++.+.||.+.+.++.. +.+..... ..+. .....-+....|.+....++.++.+|.+++++............
T Consensus 191 ~~~~~~~DG~~~~v~~~~~g~v~~~~~----~~~~-~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~ 265 (386)
T 3sjl_D 191 TFFMHCRDGSLAKVAFGTEGTPEITHT----EVFH-PEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAV 265 (386)
T ss_dssp EEEEEETTSCEEEEECCSSSCCEEEEC----CCCS-CTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCE
T ss_pred eeEEECCCCCEEEEECCCCCeEEEeec----ceec-cccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecce
Confidence 577888899999999876 44421111 0000 01111111224434444666677889999998765431110000
Q ss_pred E-Ee---eecc-cCCceeEEEEecCCCCEEEEEeC----------CCcEEEEECCCceeeeeeeCCccceEEEeeeeecC
Q 004214 231 L-SK---RLVG-YNEEILDLKFLGEEEQYLAVATN----------IEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSS 295 (768)
Q Consensus 231 ~-~~---~~~~-~~~~i~~~~~~~~~~~~l~~~~~----------~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~ 295 (768)
. .. ...+ ..+....+++.+ +++.+++... .+.|.++|+.+++.+..+.... .+..+. +.++
T Consensus 266 ~~~~~~~~~~g~~p~g~q~~a~~~-~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~-~~~~la--vs~D 341 (386)
T 3sjl_D 266 EALTEAERADGWRPGGWQQVAYHR-ALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH-EIDSIN--VSQD 341 (386)
T ss_dssp ESSCHHHHHTTEEECSSSCEEEET-TTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE-EECEEE--ECSS
T ss_pred eccccccccccccCCCcceeeECC-CCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCC-CcceEE--ECCC
Confidence 0 00 0000 112223455554 5555555432 2579999999999988876432 455665 7777
Q ss_pred CCEEEEE-EeCCCeEEEEeCCCceEEEeeec
Q 004214 296 GKILIVT-GSKDNSVRLWDSESRCCVGVGTG 325 (768)
Q Consensus 296 ~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~ 325 (768)
++.+|++ ...++.|.++|..+++.+..+..
T Consensus 342 ~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~ 372 (386)
T 3sjl_D 342 EKPLLYALSTGDKTLYIHDAESGEELRSVNQ 372 (386)
T ss_dssp SSCEEEEEETTTTEEEEEETTTCCEEEEECC
T ss_pred CCeEEEEEcCCCCeEEEEECCCCcEEEEecC
Confidence 7633544 55689999999999999888764
No 201
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.52 E-value=2.7e-12 Score=127.12 Aligned_cols=241 Identities=10% Similarity=-0.005 Sum_probs=164.4
Q ss_pred ceeEEEEecCCCCEEE-EEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceE
Q 004214 241 EILDLKFLGEEEQYLA-VATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC 319 (768)
Q Consensus 241 ~i~~~~~~~~~~~~l~-~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 319 (768)
....+++.+ ++.+++ +.+.++.|.+|+..+.........+...+.+++ +.+++. ++++.. ++.|.+||......
T Consensus 25 ~p~~i~~~~-~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~--~~~~g~-l~v~~~-~~~i~~~d~~~~~~ 99 (270)
T 1rwi_B 25 SPSGVAVDS-AGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLA--VDGAGT-VYVTDF-NNRVVTLAAGSNNQ 99 (270)
T ss_dssp CEEEEEECT-TCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEE--ECTTCC-EEEEET-TTEEEEECTTCSCC
T ss_pred CccceEECC-CCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeE--ECCCCC-EEEEcC-CCEEEEEeCCCceE
Confidence 556777765 455555 446778999999876554332223334455665 555555 355544 88999999887654
Q ss_pred EEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEe
Q 004214 320 VGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGS 399 (768)
Q Consensus 320 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 399 (768)
..........+..+++++++. ++++...++.|.+|+..... ...........+.+++++|+|+++++..
T Consensus 100 ~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~~~~----------~~~~~~~~~~~p~~i~~~~~g~l~v~~~ 168 (270)
T 1rwi_B 100 TVLPFDGLNYPEGLAVDTQGA-VYVADRGNNRVVKLAAGSKT----------QTVLPFTGLNDPDGVAVDNSGNVYVTDT 168 (270)
T ss_dssp EECCCCSCSSEEEEEECTTCC-EEEEEGGGTEEEEECTTCCS----------CEECCCCSCCSCCCEEECTTCCEEEEEG
T ss_pred eeeecCCcCCCcceEECCCCC-EEEEECCCCEEEEEECCCce----------eEeeccccCCCceeEEEeCCCCEEEEEC
Confidence 433223346789999999876 67777778899999654221 1111112234578899999999777777
Q ss_pred CCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEE
Q 004214 400 QDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQI 479 (768)
Q Consensus 400 ~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 479 (768)
.++.|.+||............+...+.+++++++|.++++...++.|.+||............+...+.+++++++|+.+
T Consensus 169 ~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~ 248 (270)
T 1rwi_B 169 DNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVY 248 (270)
T ss_dssp GGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEE
T ss_pred CCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEE
Confidence 78899999988765544333344678999999999888888788999999986554433222344678999999999988
Q ss_pred EEEeCCCcEEEEECCCCe
Q 004214 480 VSCGADGLVKLWTVRTGE 497 (768)
Q Consensus 480 ~s~~~dg~i~iwd~~~~~ 497 (768)
++...++.|++++....+
T Consensus 249 v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 249 VADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp EEEGGGTEEEEECCCGGG
T ss_pred EEECCCCEEEEEcCCCcc
Confidence 888889999999987654
No 202
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.52 E-value=1.9e-10 Score=115.68 Aligned_cols=275 Identities=7% Similarity=-0.037 Sum_probs=186.5
Q ss_pred CCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeee-eeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCc
Q 004214 239 NEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSY-VLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR 317 (768)
Q Consensus 239 ~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~-~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 317 (768)
...+.++++.+ ++.++++...++.|.+||.. ++... .+..+...+.++. ..+++. +.++...++.|..||.. +
T Consensus 19 ~~~p~~i~~d~-~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~--~~~~g~-l~v~~~~~~~v~~~d~~-g 92 (300)
T 2qc5_A 19 DSGPYGITSSE-DGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLI--VSSLGD-IWFTENGANKIGKLSKK-G 92 (300)
T ss_dssp TCCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEE--ECTTSC-EEEEETTTTEEEEECTT-S
T ss_pred CCCcceeeECC-CCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEE--ECCCCC-EEEEecCCCeEEEECCC-C
Confidence 44667777764 55666666667999999988 54433 2233335667775 555554 35555567899999988 5
Q ss_pred eEEEe-eecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEE
Q 004214 318 CCVGV-GTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVC 396 (768)
Q Consensus 318 ~~~~~-~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 396 (768)
+.... .......+.++++.+++. ++++...++.|..|+.. +. .. ..........+.++++++++++.+
T Consensus 93 ~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~--------~~-~~~~~~~~~~~~~i~~d~~g~l~v 161 (300)
T 2qc5_A 93 GFTEYPLPQPDSGPYGITEGLNGD-IWFTQLNGDRIGKLTAD-GT--------IY-EYDLPNKGSYPAFITLGSDNALWF 161 (300)
T ss_dssp CEEEEECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEECTT-SC--------EE-EEECSSTTCCEEEEEECTTSSEEE
T ss_pred CeEEecCCCCCCCCccceECCCCC-EEEEccCCCeEEEECCC-CC--------EE-EccCCCCCCCceeEEECCCCCEEE
Confidence 44322 222346789999999865 66666668889999875 21 00 111122345688999999999777
Q ss_pred EEeCCCcEEEEeCCCCceEEE-EeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEE-eecCCCcEEEEEEEe
Q 004214 397 TGSQDRTACVWRLPDLVSVVT-FRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKT-FEGHTSSVLRASFLT 474 (768)
Q Consensus 397 ~~~~dg~i~i~d~~~~~~~~~-~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~-~~~~~~~v~~~~~s~ 474 (768)
+...++.|..|+. +++.... ...+...+..++++++|++.++....+.|.+||. ++..... +..+...+.++++.+
T Consensus 162 ~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~ 239 (300)
T 2qc5_A 162 TENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGK 239 (300)
T ss_dssp EETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECS
T ss_pred EecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECC
Confidence 6666788999998 5544332 2234456889999999988887777788999998 5554432 334556788999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEE-EeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 004214 475 RGAQIVSCGADGLVKLWTVRTGECIA-TYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHD 535 (768)
Q Consensus 475 ~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~ 535 (768)
+|+..++...++.|..|+. +++... .+......+.+++++++|..+++.. . .|..++.
T Consensus 240 ~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 240 NSEIWFTEWGANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp TTCEEEEETTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred CCCEEEeccCCCeEEEECC-CCcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 9987777666789999998 454332 2333445688999999999777665 4 6666654
No 203
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.50 E-value=7e-12 Score=129.65 Aligned_cols=280 Identities=14% Similarity=0.062 Sum_probs=179.5
Q ss_pred CcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEe----------CCCeEEEEECCCCeeeeeeecceeEeeEEe
Q 004214 54 ATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAG----------RDKVVNLWDLRDYSCKLTVPTYEMVEAVCA 123 (768)
Q Consensus 54 g~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~----------~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~ 123 (768)
+.|.+.|..+++.+.++.....+ .++++|||++|+.+. .++.|.++|..+++.+.+++........
T Consensus 99 ~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~-- 174 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFL-- 174 (426)
T ss_dssp EEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCC--
T ss_pred CeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccc--
Confidence 79999999999999999765555 899999999988775 4678999999998877766532000000
Q ss_pred cCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCC
Q 004214 124 IPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQ 203 (768)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (768)
T Consensus 175 -------------------------------------------------------------------------------- 174 (426)
T 3c75_H 175 -------------------------------------------------------------------------------- 174 (426)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeC--CCcEEEEECCCceeeeeeeCC
Q 004214 204 GLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATN--IEQVQVYDLSSMSCSYVLAGH 281 (768)
Q Consensus 204 ~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~--~~~i~i~d~~~~~~~~~~~~~ 281 (768)
.......+.++ +++++++++.. ++.|.++|+.+++.+..+...
T Consensus 175 ----------------------------------~g~~P~~~~~s-pDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~ 219 (426)
T 3c75_H 175 ----------------------------------VGTYQWMNALT-PDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVP 219 (426)
T ss_dssp ----------------------------------BSCCGGGSEEC-TTSSEEEEEECSSSCEEEEEETTTTEEEEEEECC
T ss_pred ----------------------------------cCCCcceEEEc-CCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcC
Confidence 00001122222 35555555542 467888888888887776542
Q ss_pred ccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEe----eecccCcE-EEEEEecCCCcEEEEEeCCCeEEEEe
Q 004214 282 SEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGV----GTGHMGAV-GAVAFSKKLQNFLVSGSSDHTIKVWS 356 (768)
Q Consensus 282 ~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~----~~~~~~~v-~~~~~~~~~~~~l~s~~~dg~i~iwd 356 (768)
.. .. ..+.+...+++.+.||.+.+.+..+++.... +.....++ ..+.+.+++..++ ..+..+.|.+.|
T Consensus 220 g~----~~--~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~-~~s~~g~V~ViD 292 (426)
T 3c75_H 220 DC----YH--IFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLV-WPTYTGKIFQAD 292 (426)
T ss_dssp SE----EE--EEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEE-EEBTTSEEEEEE
T ss_pred Cc----ee--eccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEE-EEeCCCcEEEEe
Confidence 21 11 2333434467777888888888866655422 11111221 2346788877544 446678999999
Q ss_pred CCCCCCCCccccccc--eeeEeeccCCCeEEEEEccCCCEEEEEeC----------CCcEEEEeCCCCceEEEEeccCCC
Q 004214 357 FDGLSDDAEQPMNLK--AKAVVAAHGKDINSLAVAPNDSLVCTGSQ----------DRTACVWRLPDLVSVVTFRGHKRG 424 (768)
Q Consensus 357 ~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~ 424 (768)
+.............. ..............++++|+++.+++... ++.|.++|..+.+.+..+... ..
T Consensus 293 ~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg-~~ 371 (426)
T 3c75_H 293 LTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG-HE 371 (426)
T ss_dssp ECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EE
T ss_pred ccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC-CC
Confidence 864321000000000 00000001112224689999887777642 357999999999999988743 35
Q ss_pred eEEEEEccCCC-EEEEee-CCCcEEEEeCCCCceeEEe
Q 004214 425 IWSVEFSPVDQ-VVITAS-GDKTIKIWSISDGSCLKTF 460 (768)
Q Consensus 425 v~~v~~s~~~~-~l~t~~-~d~~i~iwd~~~~~~~~~~ 460 (768)
.+.++|+|+|+ +++++. .++.|.++|+.+++.++++
T Consensus 372 P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 372 IDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp ECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred cCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 88999999999 888887 5899999999999999987
No 204
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.50 E-value=1.5e-11 Score=124.72 Aligned_cols=241 Identities=11% Similarity=-0.002 Sum_probs=164.2
Q ss_pred ceEEEeeeeecCCCEEEEE-------EeCCCeEEEEeCCCceEEEeee----cccCcEEEEEEecC-CCcEEEEEeCCCe
Q 004214 284 IVLCLDTCALSSGKILIVT-------GSKDNSVRLWDSESRCCVGVGT----GHMGAVGAVAFSKK-LQNFLVSGSSDHT 351 (768)
Q Consensus 284 ~v~~l~~~~~~~~~~~l~~-------~~~dg~i~iwd~~~~~~~~~~~----~~~~~v~~~~~~~~-~~~~l~s~~~dg~ 351 (768)
...+++ +.+++. ++++ +..++.|.+||..+++...... ++...+.+++++++ +. +..++..+.
T Consensus 19 ~~~~~~--~~~~g~-l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~--l~v~~~~~~ 93 (314)
T 1pjx_A 19 GAEGPV--FDKNGD-FYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQ--LFVADMRLG 93 (314)
T ss_dssp TCEEEE--ECTTSC-EEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSE--EEEEETTTE
T ss_pred CccCce--ECCCCC-EEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCc--EEEEECCCC
Confidence 345554 555554 3555 4678899999988877643322 25567899999998 54 444444557
Q ss_pred EEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCC---------------CcEEEEeCCCCceEE
Q 004214 352 IKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQD---------------RTACVWRLPDLVSVV 416 (768)
Q Consensus 352 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---------------g~i~i~d~~~~~~~~ 416 (768)
|..||.. +....... . .........+.+++++|+|+++++...+ +.|..|+.. ++...
T Consensus 94 l~~~d~~-g~~~~~~~-~----~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~ 166 (314)
T 1pjx_A 94 LLVVQTD-GTFEEIAK-K----DSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQ 166 (314)
T ss_dssp EEEEETT-SCEEECCS-B----CTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEE
T ss_pred EEEEeCC-CCEEEEEe-c----cCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEE
Confidence 8889876 32100000 0 0000122457899999999888776654 567777765 54433
Q ss_pred EEeccCCCeEEEEEc----cCCCEEEEe-eCCCcEEEEeCC-CCc-----eeEEeecCC-CcEEEEEEEeCCCEEEEEeC
Q 004214 417 TFRGHKRGIWSVEFS----PVDQVVITA-SGDKTIKIWSIS-DGS-----CLKTFEGHT-SSVLRASFLTRGAQIVSCGA 484 (768)
Q Consensus 417 ~~~~~~~~v~~v~~s----~~~~~l~t~-~~d~~i~iwd~~-~~~-----~~~~~~~~~-~~v~~~~~s~~~~~l~s~~~ 484 (768)
+..+......++|+ |+++.++.+ ..++.|.+||+. ++. ....+.++. ..+..++++++|+++++...
T Consensus 167 -~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~ 245 (314)
T 1pjx_A 167 -VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWG 245 (314)
T ss_dssp -EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEET
T ss_pred -eccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcC
Confidence 33344556889999 999765544 567899999986 454 233344444 66788999999998888878
Q ss_pred CCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEE-EEEeCCCcEEEEEcCC
Q 004214 485 DGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMF-ATGGSDALVNLWHDST 537 (768)
Q Consensus 485 dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l-~s~~~dg~v~vw~~~~ 537 (768)
++.|.+||..+++.+..+..+...+.+++|+|+++.| ++...++.|..|+...
T Consensus 246 ~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 246 SSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp TTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 8899999998788777777677889999999999955 5555678899998764
No 205
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.49 E-value=1.3e-10 Score=119.85 Aligned_cols=269 Identities=10% Similarity=-0.024 Sum_probs=179.4
Q ss_pred CCCCEEEEEeC--CC---cEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEe---------CCCeEEEEeCC
Q 004214 250 EEEQYLAVATN--IE---QVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGS---------KDNSVRLWDSE 315 (768)
Q Consensus 250 ~~~~~l~~~~~--~~---~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~---------~dg~i~iwd~~ 315 (768)
+++.++.++.. .. .|.+||..+++.+..+.....+ .+. ++++++.+.++.. .++.|.+||..
T Consensus 30 ~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~--~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~ 105 (373)
T 2mad_H 30 ADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPV--AAHSGSEFALASTSFSRIAKGKRTDYVEVFDPV 105 (373)
T ss_pred CCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeE--ECCCCCEEEEEeccccccccCCCCCeEEEEECC
Confidence 45555655543 22 7899999999988777654444 555 7788887444432 36789999999
Q ss_pred CceEEEeeecc-------cCcEEEEEEecCCCcEEEEEe-C-CCeEEEEeCCCCCCCCccccccceeeE-eeccCCCeEE
Q 004214 316 SRCCVGVGTGH-------MGAVGAVAFSKKLQNFLVSGS-S-DHTIKVWSFDGLSDDAEQPMNLKAKAV-VAAHGKDINS 385 (768)
Q Consensus 316 ~~~~~~~~~~~-------~~~v~~~~~~~~~~~~l~s~~-~-dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~ 385 (768)
+.+.+..+... ......++++|+|+. ++++. . ++.|.++| .... .... .. .. .+
T Consensus 106 t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~-l~v~n~~~~~~v~viD-~t~~----------~~~~~i~-~~---~~ 169 (373)
T 2mad_H 106 TFLPIADIELPDAPRFDVGPYSWMNANTPNNAD-LLFFQFAAGPAVGLVV-QGGS----------SDDQLLS-SP---TC 169 (373)
T ss_pred CCcEEEEEECCCccccccCCCccceEECCCCCE-EEEEecCCCCeEEEEE-CCCC----------EEeEEcC-CC---ce
Confidence 88877665432 123457899999885 55544 3 58899999 7542 1111 11 11 12
Q ss_pred EEEccCC-CEEEEEeCCCcEEEEeCCCCceEEEEe-----ccCCCe-EEEEEccCCCEEEEeeCCCcEEEEeCCCCc--e
Q 004214 386 LAVAPND-SLVCTGSQDRTACVWRLPDLVSVVTFR-----GHKRGI-WSVEFSPVDQVVITASGDKTIKIWSISDGS--C 456 (768)
Q Consensus 386 ~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~-----~~~~~v-~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~--~ 456 (768)
+.+.|++ +.+++.+.||.+.++|. +++...... ....++ ....+.+++..++..+..+.+.+.|+..+. .
T Consensus 170 ~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v 248 (373)
T 2mad_H 170 YHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATN 248 (373)
T ss_pred EEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceE
Confidence 4455554 45667778999999999 877664322 111221 234567766554444567899999987553 2
Q ss_pred eEEeec----------CCCcEEEEEEEeCCCEEEEEeC----------CCcEEEEECCCCeEEEEeccCCCcEEEEEEcC
Q 004214 457 LKTFEG----------HTSSVLRASFLTRGAQIVSCGA----------DGLVKLWTVRTGECIATYDKHEDKIWALAVGK 516 (768)
Q Consensus 457 ~~~~~~----------~~~~v~~~~~s~~~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~ 516 (768)
+..+.- .......+.++|+++.++++.. ++.|.++|..+++.+.++. -....++++|+|
T Consensus 249 ~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~-~g~~p~~i~~s~ 327 (373)
T 2mad_H 249 KAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQ 327 (373)
T ss_pred eeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEE-CCCCcCeEEECC
Confidence 233321 1122344788999998877653 3579999999999999996 344689999999
Q ss_pred CCC-EEEEEe-CCCcEEEEEcCCHHH
Q 004214 517 KTE-MFATGG-SDALVNLWHDSTAAE 540 (768)
Q Consensus 517 ~~~-~l~s~~-~dg~v~vw~~~~~~~ 540 (768)
||+ .++++. .++.|.+||..+.+.
T Consensus 328 Dg~~~l~v~~~~~~~V~ViD~~t~~v 353 (373)
T 2mad_H 328 DGGPDLYALSAGTEVLHIYDAGAGDQ 353 (373)
T ss_pred CCCeEEEEEcCCCCeEEEEECCCCCE
Confidence 999 777776 589999999988654
No 206
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.48 E-value=3.5e-08 Score=113.30 Aligned_cols=454 Identities=10% Similarity=0.032 Sum_probs=259.7
Q ss_pred CcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEe-c---C---ccceeEEEEEcC--CCCEEEEEeCCCeEEEE
Q 004214 31 GVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATL-D---K---HFSRVTSMAITS--DGSTLISAGRDKVVNLW 101 (768)
Q Consensus 31 ~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l-~---~---h~~~V~~l~fs~--d~~~L~s~~~dg~i~vW 101 (768)
..|.+|...++|.. |-.|+.++-+..||..+++..... . . ....|.++.... +|. |..++.++.|..+
T Consensus 66 n~I~~i~~d~~g~~--lWigt~~~Gl~~~d~~~~~f~~~~~~~~~~~~l~~~~i~~i~~d~~~~g~-lwi~t~~~gl~~~ 142 (781)
T 3v9f_A 66 NELNEVYTDPVQPV--IWIATQRAGLNAYNYETQSFSVYQYNPEDPQSLITNDVTHITSSVQAGKG-LWVCTYYRGIEYL 142 (781)
T ss_dssp SCEEEEEECSSSSE--EEEEESSSCEEEEETTTTEEEEECCCTTCSSSCSCSCEEEEEECSSTTSE-EEEEESSSCEEEE
T ss_pred cccceEEEcCCCCE--EEEEeCCCCcceECCCCCeEEeeccccCCCCCcccCcceEEEecCccCCC-EEEEECCCCeeEE
Confidence 35999988887763 445666745999999877654331 1 0 123688888877 665 5555544458889
Q ss_pred ECCCCeeeeeeec------ceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeee
Q 004214 102 DLRDYSCKLTVPT------YEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQ 175 (768)
Q Consensus 102 d~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~ 175 (768)
|..+++....... ...+.++...+.+ .+..++.++.|..|+..++.....
T Consensus 143 ~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g------------------------~lwigt~~~Gl~~~~~~~~~~~~~ 198 (781)
T 3v9f_A 143 DIATGKFTHYNKSTVPALPSEQTWTATEAEDG------------------------KLYIGHVEGGLSILSLNDKSVKHF 198 (781)
T ss_dssp ETTTTEEEEESTTTCTTCSCCCEEEEEEEETT------------------------EEEEEETTTEEEEEETTTTEEEEE
T ss_pred ECCCCeEEeeccCcccCCCccceEEEEECCCC------------------------CEEEEecCCCeEEEcCCCCceEee
Confidence 9877654322110 1112233322222 455566665688888877644321
Q ss_pred cCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEE
Q 004214 176 KSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYL 255 (768)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 255 (768)
...... ........+..+... ....+.+++.+ .+..|+.......................|.++... ....+
T Consensus 199 ~~~~~~---~~~l~~~~i~~i~~d-~~g~lwigt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d--~~g~l 271 (781)
T 3v9f_A 199 VHDPQN---PNSLPGNDVRCIYKD-TNGNIWIGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQL--KDNKL 271 (781)
T ss_dssp CC-----------CCSSEEEEEEC-TTCCEEEEETT-EEEEEETTTTEEEC-----------CCCCEEEEEEC--TTSEE
T ss_pred ecCCCC---cccCCCCceeEEEEc-CCCCEEEEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEEC--CCCCE
Confidence 110000 000011233333333 34456666655 688887654321111100000001123457777654 44577
Q ss_pred EEEeCCCcEEEEECCCceeeeeee--------------CCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEE
Q 004214 256 AVATNIEQVQVYDLSSMSCSYVLA--------------GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVG 321 (768)
Q Consensus 256 ~~~~~~~~i~i~d~~~~~~~~~~~--------------~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 321 (768)
.+|+..+-|.+++..+........ .....|.++. .... +. |..|+.++-|..++..++....
T Consensus 272 Wigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~--~D~~-g~-lWigt~~~Gl~~~~~~~~~~~~ 347 (781)
T 3v9f_A 272 WIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIF--QDSF-NN-IWIGTWGGGINFISNAPPTFHT 347 (781)
T ss_dssp EEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEE--ECSS-CC-EEEEEBSSCEEEECSSCCSCEE
T ss_pred EEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEE--EeCC-CC-EEEEecCCeEEEeCCCCCccee
Confidence 788886788999987765432211 1345677774 3333 34 7788888889999887654332
Q ss_pred ee---------ecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCC
Q 004214 322 VG---------TGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND 392 (768)
Q Consensus 322 ~~---------~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 392 (768)
.. ......|.+++..+++. +..|+.++-|..|+........ . ..........|.++...++|
T Consensus 348 ~~~~~~~~~~~~l~~~~v~~i~~d~~g~--lWigt~~~Gl~~~~~~~~~~~~-----~--~~~~~~~~~~v~~i~~d~~g 418 (781)
T 3v9f_A 348 WSYSPTQMNESSLSNKVVSSVCDDGQGK--LWIGTDGGGINVFENGKRVAIY-----N--KENRELLSNSVLCSLKDSEG 418 (781)
T ss_dssp EC----CCCSSCCSSSCEEEEEECTTSC--EEEEEBSSCEEEEETTEEEEEC-----C-------CCCSBEEEEEECTTS
T ss_pred eccCccccccCCCCCcceEEEEEcCCCC--EEEEeCCCcEEEEECCCCeEEE-----c--cCCCCCCCcceEEEEECCCC
Confidence 21 11345689999888765 6677767778888865321000 0 00001234678999988887
Q ss_pred CEEEEEeCCCcEEEEeCCCCceEEEEe--ccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecC-----CC
Q 004214 393 SLVCTGSQDRTACVWRLPDLVSVVTFR--GHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGH-----TS 465 (768)
Q Consensus 393 ~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~-----~~ 465 (768)
.+.+ |+.++-+..++..+++...... .....|.++...+++.+.+. +. +-|..||..+++........ ..
T Consensus 419 ~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwig-t~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~ 495 (781)
T 3v9f_A 419 NLWF-GTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIG-TH-AGVFVIDLASKKVIHHYDTSNSQLLEN 495 (781)
T ss_dssp CEEE-EETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEE-ET-TEEEEEESSSSSCCEEECTTTSSCSCS
T ss_pred CEEE-EeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEE-EC-CceEEEeCCCCeEEecccCcccccccc
Confidence 6554 6776779999987765432211 13457899998888875554 44 55899998776654333222 46
Q ss_pred cEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEecc----CCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 004214 466 SVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDK----HEDKIWALAVGKKTEMFATGGSDALVNLWHDST 537 (768)
Q Consensus 466 ~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~ 537 (768)
.|.++...++|+..+.....| |..||..+++... +.. ....|.++...++|...++.. +|.+..|+..+
T Consensus 496 ~i~~i~~d~~g~lWigt~~~G-l~~~~~~~~~~~~-~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~ 568 (781)
T 3v9f_A 496 FVRSIAQDSEGRFWIGTFGGG-VGIYTPDMQLVRK-FNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSARN 568 (781)
T ss_dssp CEEEEEECTTCCEEEEESSSC-EEEECTTCCEEEE-ECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTTT
T ss_pred eeEEEEEcCCCCEEEEEcCCC-EEEEeCCCCeEEE-ccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCCC
Confidence 788898888887665443345 7778887765433 321 245689999999998777655 77657777654
No 207
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.46 E-value=3.7e-08 Score=113.13 Aligned_cols=474 Identities=11% Similarity=0.049 Sum_probs=272.9
Q ss_pred eecCCCcEEEEECCCCEEEEEEEc-------CCCcEEEEEEee--CCCccEEEEEeCCCcEEEEECCCCeeEEEec----
Q 004214 5 LEGADRKVLVWDVDGGFCTHYFKG-------HKGVVSSILFHP--DTDKSLLFSGSDDATVRVWDLLAKKCVATLD---- 71 (768)
Q Consensus 5 tg~~dg~i~vwd~~~~~~~~~l~g-------h~~~V~~l~~sp--d~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~---- 71 (768)
.|+.++-+..||..++........ ....|.++...+ +|. |..++.++-|..+|..+++......
T Consensus 82 igt~~~Gl~~~d~~~~~f~~~~~~~~~~~~l~~~~i~~i~~d~~~~g~---lwi~t~~~gl~~~~~~~~~~~~~~~~~~~ 158 (781)
T 3v9f_A 82 IATQRAGLNAYNYETQSFSVYQYNPEDPQSLITNDVTHITSSVQAGKG---LWVCTYYRGIEYLDIATGKFTHYNKSTVP 158 (781)
T ss_dssp EEESSSCEEEEETTTTEEEEECCCTTCSSSCSCSCEEEEEECSSTTSE---EEEEESSSCEEEEETTTTEEEEESTTTCT
T ss_pred EEeCCCCcceECCCCCeEEeeccccCCCCCcccCcceEEEecCccCCC---EEEEECCCCeeEEECCCCeEEeeccCccc
Confidence 355565799999988875432111 123688888877 654 4456644558999987776543321
Q ss_pred -CccceeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeeeec--------ceeEeeEEecCCCCCccccccccchhhh
Q 004214 72 -KHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPT--------YEMVEAVCAIPPGSAFDSFLSSYNQQTI 142 (768)
Q Consensus 72 -~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~--------~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 142 (768)
.....|.++...++|... .++.++-|..||..+++....... ...+.++...+.+
T Consensus 159 ~l~~~~i~~i~~d~~g~lw-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g--------------- 222 (781)
T 3v9f_A 159 ALPSEQTWTATEAEDGKLY-IGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNG--------------- 222 (781)
T ss_dssp TCSCCCEEEEEEEETTEEE-EEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTC---------------
T ss_pred CCCccceEEEEECCCCCEE-EEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCC---------------
Confidence 123458888887777544 455554688999887654322110 1124444443333
Q ss_pred hcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccC
Q 004214 143 KKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEV 222 (768)
Q Consensus 143 ~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~ 222 (768)
.+..++.. .+.+|+..++........... ........+..+.. .....+.+++..+.+..++....
T Consensus 223 ---------~lwigt~~-Gl~~~d~~~~~~~~~~~~~~~---~~~l~~~~i~~i~~-d~~g~lWigt~~~Gl~~~~~~~~ 288 (781)
T 3v9f_A 223 ---------NIWIGTSK-GLALFNANTETFTNFHNNPGN---IHGALSSYIFSIKQ-LKDNKLWIATELNGIMILDLQQN 288 (781)
T ss_dssp ---------CEEEEETT-EEEEEETTTTEEEC--------------CCCCEEEEEE-CTTSEEEEEESSSCEEEEETTCC
T ss_pred ---------CEEEEeCC-cHheECCCCCcEEEEEcCCCc---cccccCceEEEEEE-CCCCCEEEEeCCCCeEEECCCCC
Confidence 23444444 588888877644322111000 00011123333333 33445666776577777776543
Q ss_pred cccceee---EE--E--eeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeee---------CCccceE
Q 004214 223 PEKKMEL---IL--S--KRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLA---------GHSEIVL 286 (768)
Q Consensus 223 ~~~~~~~---~~--~--~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~---------~~~~~v~ 286 (768)
....... .. . .........|.++... ....+.+|+.++-|..++..+........ .....|.
T Consensus 289 ~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D--~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~ 366 (781)
T 3v9f_A 289 QFLLPEQIRFEFIREGDNNYSLSNASARYIFQD--SFNNIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVS 366 (781)
T ss_dssp ---------CEEECBCSSTTSBSSSCEEEEEEC--SSCCEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEE
T ss_pred eeeeeeccccccccCCCCCCCCCCCeEEEEEEe--CCCCEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceE
Confidence 2111100 00 0 0011123456666654 34467788877889999987655432211 1235577
Q ss_pred EEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEee---ecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCC
Q 004214 287 CLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVG---TGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDD 363 (768)
Q Consensus 287 ~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 363 (768)
++. ...+ +. |..|+.++-|..|+..++...... ......|.++...+++. |..|+.++.+..++.....
T Consensus 367 ~i~--~d~~-g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~--lWigt~~~Gl~~~~~~~~~-- 438 (781)
T 3v9f_A 367 SVC--DDGQ-GK-LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGN--LWFGTYLGNISYYNTRLKK-- 438 (781)
T ss_dssp EEE--ECTT-SC-EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSC--EEEEETTEEEEEECSSSCE--
T ss_pred EEE--EcCC-CC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCC--EEEEeccCCEEEEcCCCCc--
Confidence 774 3333 44 677787777999998765443221 12346788998887765 6667777778888865321
Q ss_pred CccccccceeeEe--eccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEecc-----CCCeEEEEEccCCCE
Q 004214 364 AEQPMNLKAKAVV--AAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGH-----KRGIWSVEFSPVDQV 436 (768)
Q Consensus 364 ~~~~~~~~~~~~~--~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-----~~~v~~v~~s~~~~~ 436 (768)
..... ......|.++...++|.+.+ |+. +-+..||..+++........ ...|.++...++|++
T Consensus 439 --------~~~~~~~~~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~l 508 (781)
T 3v9f_A 439 --------FQIIELEKNELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRF 508 (781)
T ss_dssp --------EEECCSTTTCCCCEEEEEECTTSEEEE-EET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCE
T ss_pred --------EEEeccCCCCCCeEEEEEECCCCCEEE-EEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCE
Confidence 11000 11345788999888886544 555 55889998876554333222 357899999998886
Q ss_pred EEEeeCCCcEEEEeCCCCceeEEeec----CCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEecc----CCCc
Q 004214 437 VITASGDKTIKIWSISDGSCLKTFEG----HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDK----HEDK 508 (768)
Q Consensus 437 l~t~~~d~~i~iwd~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----~~~~ 508 (768)
.+.....| +..||..+++.. .+.. ....|.++...++|+..++.. +|.|..||..+++.. .+.. ....
T Consensus 509 Wigt~~~G-l~~~~~~~~~~~-~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~~~~-~~~~~~gl~~~~ 584 (781)
T 3v9f_A 509 WIGTFGGG-VGIYTPDMQLVR-KFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSARNFDYQ-VFQRKEGLPNTH 584 (781)
T ss_dssp EEEESSSC-EEEECTTCCEEE-EECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTTTCCCE-EECGGGTCSCCC
T ss_pred EEEEcCCC-EEEEeCCCCeEE-EccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCCCCcEE-EccccCCCCCce
Confidence 66544344 778898665433 3321 235688888888887655544 776588998776533 2321 2245
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 004214 509 IWALAVGKKTEMFATGGSDALVNLWHDST 537 (768)
Q Consensus 509 v~~l~~s~~~~~l~s~~~dg~v~vw~~~~ 537 (768)
|.++...++|...+++ ..| |..++..+
T Consensus 585 i~~i~~d~~g~lW~~t-~~G-l~~~~~~~ 611 (781)
T 3v9f_A 585 IRAISEDKNGNIWAST-NTG-ISCYITSK 611 (781)
T ss_dssp CCEEEECSSSCEEEEC-SSC-EEEEETTT
T ss_pred EEEEEECCCCCEEEEc-CCc-eEEEECCC
Confidence 7889999999877665 455 66677653
No 208
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.46 E-value=2.1e-12 Score=131.61 Aligned_cols=182 Identities=12% Similarity=0.116 Sum_probs=140.3
Q ss_pred cEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCc-cccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEE
Q 004214 329 AVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAE-QPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVW 407 (768)
Q Consensus 329 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~ 407 (768)
++..+++++..+ ++++|+.++ +.+|++........ ........ ....+.. |+.++| ++++|+++ .++.|++|
T Consensus 39 ~~nlLais~~~g-ll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~-~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~ 111 (388)
T 1xip_A 39 SLQNLDISNSKS-LFVAASGSK-AVVGELQLLRDHITSDSTPLTFK-WEKEIPD-VIFVCF--HGDQVLVS-TRNALYSL 111 (388)
T ss_dssp CCBCEEEETTTT-EEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCS-EEEECTT-EEEEEE--ETTEEEEE-ESSEEEEE
T ss_pred cccEEEEcCCCC-EEEEeCCCE-EEEEEhhHhhhhhccccccccce-EEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEE
Confidence 688999999865 788888875 55698753320000 00001111 2234566 999999 89999998 88999999
Q ss_pred eCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCc
Q 004214 408 RLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGL 487 (768)
Q Consensus 408 d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~ 487 (768)
|+.+.........|..++.++.+.+.. +++++.||.|.+||+.++.... +...|++++|+|+| ++.|..||+
T Consensus 112 dv~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~ 183 (388)
T 1xip_A 112 DLEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDRS 183 (388)
T ss_dssp ESSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETTSC
T ss_pred EchhhhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcCCc
Confidence 999887777777888889888877643 8888999999999999887653 45689999999999 788999999
Q ss_pred EEEEECCCCeE--EEEe------c---cCCCcEEEEEEcCCCCEEEEEe
Q 004214 488 VKLWTVRTGEC--IATY------D---KHEDKIWALAVGKKTEMFATGG 525 (768)
Q Consensus 488 i~iwd~~~~~~--~~~~------~---~~~~~v~~l~~s~~~~~l~s~~ 525 (768)
+++|+...+++ ..++ . +|...|.++.|.+++.++++=+
T Consensus 184 i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 184 FQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp EEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred EEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 99999988886 6666 2 3788999999999999988733
No 209
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.46 E-value=1.6e-11 Score=140.25 Aligned_cols=242 Identities=13% Similarity=0.055 Sum_probs=161.3
Q ss_pred cceEEEeeeeecCCCEEEEEEeCCC----eEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCe-------
Q 004214 283 EIVLCLDTCALSSGKILIVTGSKDN----SVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHT------- 351 (768)
Q Consensus 283 ~~v~~l~~~~~~~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~------- 351 (768)
..+..+. ++|+++.++++.+.+| .|++||+.+++.+... .+...+..++|+|+ +. |+.++.++.
T Consensus 163 ~~~~~~~--~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD-~~-l~~~~~~~~~~~~~~~ 237 (741)
T 1yr2_A 163 TALDAWA--ASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLGN-DA-LLYSRFAEPKEGQAFQ 237 (741)
T ss_dssp EEEEEEE--ECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEESTT-SE-EEEEECCCC-------
T ss_pred EEEEeEE--ECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEECC-CE-EEEEEecCcccccccc
Confidence 3556665 7788887444444434 5999999999876542 12222357899999 64 555555443
Q ss_pred -------EEEEeCCCCCCCCccccccceeeEee--ccCCCeEEEEEccCCCEEEEEeCCC-----cEEEEeCCCC--ceE
Q 004214 352 -------IKVWSFDGLSDDAEQPMNLKAKAVVA--AHGKDINSLAVAPNDSLVCTGSQDR-----TACVWRLPDL--VSV 415 (768)
Q Consensus 352 -------i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~s~~~~~l~~~~~dg-----~i~i~d~~~~--~~~ 415 (768)
|.+|++..... ....... .+...+.++.|+|||++|+..+.++ .|++||+.++ +..
T Consensus 238 ~~~~~~~v~~~~lgt~~~--------~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~ 309 (741)
T 1yr2_A 238 ALNYNQTVWLHRLGTPQS--------ADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPV 309 (741)
T ss_dssp -CCCCCEEEEEETTSCGG--------GCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCC
T ss_pred cCCCCCEEEEEECCCCch--------hCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCccc
Confidence 88888864321 1111222 2233578999999999988877544 7999999876 314
Q ss_pred EEEeccCCCeEEEEEccCCCEEEEeeC----CCcEEEEeCCCC--ceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEE
Q 004214 416 VTFRGHKRGIWSVEFSPVDQVVITASG----DKTIKIWSISDG--SCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVK 489 (768)
Q Consensus 416 ~~~~~~~~~v~~v~~s~~~~~l~t~~~----d~~i~iwd~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~ 489 (768)
..+..+...+.... +|+|+.|+..+. ++.|.+||+.++ .....+..+...+..+.|+ ++.++++...||..+
T Consensus 310 ~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~ 387 (741)
T 1yr2_A 310 TALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQ 387 (741)
T ss_dssp EEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEE
T ss_pred EEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEE
Confidence 55655655555553 488988887765 345999999875 3344444555566677777 566778888899877
Q ss_pred EEECC-CCeEEEEecc-CCCcEEEEEEcCCCCEEEEE----eCCCcEEEEEcCCHH
Q 004214 490 LWTVR-TGECIATYDK-HEDKIWALAVGKKTEMFATG----GSDALVNLWHDSTAA 539 (768)
Q Consensus 490 iwd~~-~~~~~~~~~~-~~~~v~~l~~s~~~~~l~s~----~~dg~v~vw~~~~~~ 539 (768)
||.+. ++.....+.. +.+.+..+.++|++..|+.. ...+.|++|++.+++
T Consensus 388 l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 388 VLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred EEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 77554 4666666654 36778899999998866632 245789999987754
No 210
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.46 E-value=1.4e-10 Score=116.38 Aligned_cols=221 Identities=14% Similarity=0.106 Sum_probs=153.2
Q ss_pred eecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccc
Q 004214 292 ALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLK 371 (768)
Q Consensus 292 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 371 (768)
+.++++.++++...++.|..||..++.... + .....+.++++++++. ++++ . ++.|.+||...+. ..
T Consensus 20 w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~-~~~~~~~~i~~~~dG~-l~v~-~-~~~l~~~d~~~g~--------~~ 86 (297)
T 3g4e_A 20 WEEVSNSLLFVDIPAKKVCRWDSFTKQVQR-V-TMDAPVSSVALRQSGG-YVAT-I-GTKFCALNWKEQS--------AV 86 (297)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTTCCEEE-E-ECSSCEEEEEEBTTSS-EEEE-E-TTEEEEEETTTTE--------EE
T ss_pred EECCCCEEEEEECCCCEEEEEECCCCcEEE-E-eCCCceEEEEECCCCC-EEEE-E-CCeEEEEECCCCc--------EE
Confidence 667677778888889999999998876532 2 2456799999999987 4444 4 5679999986431 11
Q ss_pred eeeEee--ccCCCeEEEEEccCCCEEEEEeCC---------CcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEE-E
Q 004214 372 AKAVVA--AHGKDINSLAVAPNDSLVCTGSQD---------RTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVI-T 439 (768)
Q Consensus 372 ~~~~~~--~~~~~i~~~~~s~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~-t 439 (768)
...... .....++.++++|+|+++++.... ..-.+|.+........+..+......++|+|+++.|+ +
T Consensus 87 ~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~ 166 (297)
T 3g4e_A 87 VLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYI 166 (297)
T ss_dssp EEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEEE
T ss_pred EEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEEEEe
Confidence 111110 012347889999999977654321 2334555443222233333445568899999998665 4
Q ss_pred eeCCCcEEEEeC--CCCce-----eEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEE
Q 004214 440 ASGDKTIKIWSI--SDGSC-----LKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWAL 512 (768)
Q Consensus 440 ~~~d~~i~iwd~--~~~~~-----~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l 512 (768)
.+.++.|.+|++ .++.. ...+..+......+++.++|++.++....+.|.+||..+|+.+..+..+...++++
T Consensus 167 ~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~ 246 (297)
T 3g4e_A 167 DSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSC 246 (297)
T ss_dssp EGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEE
T ss_pred cCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEE
Confidence 555788999987 45543 22333344677889999999888887778899999999999999998777889999
Q ss_pred EEc-CCCCEEEEEe
Q 004214 513 AVG-KKTEMFATGG 525 (768)
Q Consensus 513 ~~s-~~~~~l~s~~ 525 (768)
+|. |+++.|..++
T Consensus 247 ~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 247 CFGGKNYSEMYVTC 260 (297)
T ss_dssp EEESGGGCEEEEEE
T ss_pred EEeCCCCCEEEEEc
Confidence 998 8887765544
No 211
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.43 E-value=1.1e-09 Score=109.95 Aligned_cols=172 Identities=5% Similarity=-0.031 Sum_probs=112.8
Q ss_pred CCeEEEEeCCCceEEEe-eecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeE
Q 004214 306 DNSVRLWDSESRCCVGV-GTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDIN 384 (768)
Q Consensus 306 dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 384 (768)
++.|..||.. ++.... .......+..+++.+++. ++++...++.|..|+.. +. . .......+...+.
T Consensus 124 ~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~i~~~~~~-g~--------~-~~~~~~~~~~~~~ 191 (300)
T 2qc5_A 124 GDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNA-LWFTENQNNSIGRITNT-GK--------L-EEYPLPTNAAAPV 191 (300)
T ss_dssp TTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSS-EEEEETTTTEEEEECTT-CC--------E-EEEECSSTTCCEE
T ss_pred CCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCC-EEEEecCCCeEEEECCC-Cc--------E-EEeeCCCCCCCcc
Confidence 4555555554 332211 222345678899999876 66666667889999873 21 0 0111122345688
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEeCCCCceEEE-EeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeE-Eeec
Q 004214 385 SLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVT-FRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLK-TFEG 462 (768)
Q Consensus 385 ~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~-~~~~ 462 (768)
+++++++|.+.++....+.|.+|+. ++..... +..+...+.+++++++|++.++...++.|..||. ++.... .+..
T Consensus 192 ~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~ 269 (300)
T 2qc5_A 192 GITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQEYQLQT 269 (300)
T ss_dssp EEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEEEEECCS
T ss_pred eEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEEEEECCc
Confidence 9999999987777666778999998 4443332 3334567899999999997777767789999998 454332 2333
Q ss_pred CCCcEEEEEEEeCCCEEEEEeCCCcEEEEEC
Q 004214 463 HTSSVLRASFLTRGAQIVSCGADGLVKLWTV 493 (768)
Q Consensus 463 ~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 493 (768)
....+.++++.++|+..++.. . .|..+|.
T Consensus 270 ~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 270 ENAEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp TTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred cCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 445678899999998666655 4 6666664
No 212
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.43 E-value=1.1e-10 Score=118.32 Aligned_cols=238 Identities=10% Similarity=0.090 Sum_probs=162.1
Q ss_pred CceeEEEEecCCCCEEEE-------EeCCCcEEEEECCCceeeeeee----CCccceEEEeeeeecCCCEEEEEEeCCCe
Q 004214 240 EEILDLKFLGEEEQYLAV-------ATNIEQVQVYDLSSMSCSYVLA----GHSEIVLCLDTCALSSGKILIVTGSKDNS 308 (768)
Q Consensus 240 ~~i~~~~~~~~~~~~l~~-------~~~~~~i~i~d~~~~~~~~~~~----~~~~~v~~l~~~~~~~~~~~l~~~~~dg~ 308 (768)
....+++|. +++.++++ ++.++.|.+||..+++...... ++...+.++. +.++++. +..++..+.
T Consensus 18 ~~~~~~~~~-~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~--~~~~~g~-l~v~~~~~~ 93 (314)
T 1pjx_A 18 PGAEGPVFD-KNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQ--CDRDANQ-LFVADMRLG 93 (314)
T ss_dssp TTCEEEEEC-TTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEE--ECSSSSE-EEEEETTTE
T ss_pred CCccCceEC-CCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEE--EecCCCc-EEEEECCCC
Confidence 345678887 46666666 4677899999988777543322 2445567775 5555255 444444558
Q ss_pred EEEEeCCCceEEEe-eec----ccCcEEEEEEecCCCcEEEEEeCC---------------CeEEEEeCCCCCCCCcccc
Q 004214 309 VRLWDSESRCCVGV-GTG----HMGAVGAVAFSKKLQNFLVSGSSD---------------HTIKVWSFDGLSDDAEQPM 368 (768)
Q Consensus 309 i~iwd~~~~~~~~~-~~~----~~~~v~~~~~~~~~~~~l~s~~~d---------------g~i~iwd~~~~~~~~~~~~ 368 (768)
|.+||.. ++.... ... +...+.++++++++. ++++...+ +.|..|+.. +
T Consensus 94 l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g-------- 162 (314)
T 1pjx_A 94 LLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-G-------- 162 (314)
T ss_dssp EEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-S--------
T ss_pred EEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCC-EEEEecCcccccccccccccCCCCeEEEECCC-C--------
Confidence 9999998 665443 221 123578999999976 55555544 456666543 1
Q ss_pred ccceeeEeeccCCCeEEEEEc----cCCCEEEEE-eCCCcEEEEeCC-CCc-----eEEEEeccC-CCeEEEEEccCCCE
Q 004214 369 NLKAKAVVAAHGKDINSLAVA----PNDSLVCTG-SQDRTACVWRLP-DLV-----SVVTFRGHK-RGIWSVEFSPVDQV 436 (768)
Q Consensus 369 ~~~~~~~~~~~~~~i~~~~~s----~~~~~l~~~-~~dg~i~i~d~~-~~~-----~~~~~~~~~-~~v~~v~~s~~~~~ 436 (768)
. . .....+......++++ |+++.++++ ..++.|.+|+.. ++. ....+.++. ..+..++++++|++
T Consensus 163 ~--~-~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l 239 (314)
T 1pjx_A 163 Q--M-IQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNL 239 (314)
T ss_dssp C--E-EEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCE
T ss_pred C--E-EEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCE
Confidence 1 1 1112233456889999 999765555 567899999976 443 222333333 56788999999999
Q ss_pred EEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEE-eCCCcEEEEECCC
Q 004214 437 VITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSC-GADGLVKLWTVRT 495 (768)
Q Consensus 437 l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~-~~dg~i~iwd~~~ 495 (768)
+++...++.|.+||..+++.+..+..+...+.+++|+++|++|+.+ ..++.|..|++..
T Consensus 240 ~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 240 LVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred EEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 8888788999999998788888887777889999999999966544 4567899998864
No 213
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.42 E-value=1.6e-10 Score=119.41 Aligned_cols=279 Identities=10% Similarity=-0.005 Sum_probs=182.0
Q ss_pred CcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEE--------eCCCcEEEEECCCCeeEEEecCc-------c
Q 004214 10 RKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSG--------SDDATVRVWDLLAKKCVATLDKH-------F 74 (768)
Q Consensus 10 g~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg--------~~dg~I~iWd~~~~~~~~~l~~h-------~ 74 (768)
+.|.++|..+++.+..+.--..+ .++++|||++.+++.. ..++.|.++|..+++.+.++.-. .
T Consensus 99 ~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g 176 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVG 176 (426)
T ss_dssp EEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBS
T ss_pred CeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccC
Confidence 79999999999999998865556 8999999998555442 24678999999999998887521 2
Q ss_pred ceeEEEEEcCCCCEEEEEeC--CCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceE
Q 004214 75 SRVTSMAITSDGSTLISAGR--DKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIH 152 (768)
Q Consensus 75 ~~V~~l~fs~d~~~L~s~~~--dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (768)
.....++|+|||++|+.+.. ++.|.+.|+.+++.+.+++.... ....|.+. ..
T Consensus 177 ~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~---~~~~p~g~----------------------~~ 231 (426)
T 3c75_H 177 TYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC---YHIFPASP----------------------TV 231 (426)
T ss_dssp CCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEEET----------------------TE
T ss_pred CCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc---eeeccCCC----------------------cE
Confidence 34567899999999998874 57899999999999988876432 12222221 25
Q ss_pred EEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEE
Q 004214 153 FITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILS 232 (768)
Q Consensus 153 ~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~ 232 (768)
+++.+.+|.+.+.+..++....... ..+... ....+....+.+++..++..+..+.+.+.+..............
T Consensus 232 ~v~~~~dG~~~~V~~~~~~v~~~~~----~~~~v~-~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~ 306 (426)
T 3c75_H 232 FYMNCRDGSLARVDFADGETKVTNT----EVFHTE-DELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEA 306 (426)
T ss_dssp EEEEETTSSEEEEECCTTCCEEEEC----CCCSCT-TSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEES
T ss_pred EEEEcCCCCEEEEECCCCcEEEEee----eeeccC-CCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeee
Confidence 6677788888888886554432111 000000 01112234567788888777778888888875432110000000
Q ss_pred ee----ecc-cCCceeEEEEecCCCCEEEEEeC---------CCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCE
Q 004214 233 KR----LVG-YNEEILDLKFLGEEEQYLAVATN---------IEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKI 298 (768)
Q Consensus 233 ~~----~~~-~~~~i~~~~~~~~~~~~l~~~~~---------~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~ 298 (768)
.. ..+ .......++++++....+++..+ ++.|.++|..+.+.+..+.... ...++. +.++++.
T Consensus 307 ~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~-~P~gia--~spDg~~ 383 (426)
T 3c75_H 307 LTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH-EIDSIN--VSQDAEP 383 (426)
T ss_dssp SCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE-EECEEE--ECCSSSC
T ss_pred ccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCC-CcCeEE--EccCCCE
Confidence 00 000 01111235666544444443321 3579999999999998886433 355555 7788872
Q ss_pred EEEEEe-CCCeEEEEeCCCceEEEee
Q 004214 299 LIVTGS-KDNSVRLWDSESRCCVGVG 323 (768)
Q Consensus 299 ~l~~~~-~dg~i~iwd~~~~~~~~~~ 323 (768)
++++.. .++.|.++|..+++.+..+
T Consensus 384 ~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 384 LLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred EEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 366665 6999999999999998876
No 214
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.40 E-value=3.3e-10 Score=118.65 Aligned_cols=236 Identities=10% Similarity=0.061 Sum_probs=161.2
Q ss_pred ceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCC--eEEEEeCCCCC
Q 004214 284 IVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDH--TIKVWSFDGLS 361 (768)
Q Consensus 284 ~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~ 361 (768)
....++ +.+++ .++++...++.|++||..++...........+ . ++|++++. .++++..++ .|..|+.....
T Consensus 132 ~P~~la--~d~~g-~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~-~-ia~~~~g~-~l~~~d~~~~~~I~~~d~~~~~ 205 (409)
T 3hrp_A 132 YMWGIA--AVGNN-TVLAYQRDDPRVRLISVDDNKVTTVHPGFKGG-K-PAVTKDKQ-RVYSIGWEGTHTVYVYMKASGW 205 (409)
T ss_dssp CEEEEE--ECSTT-EEEEEETTTTEEEEEETTTTEEEEEEETCCBC-B-CEECTTSS-EEEEEBSSTTCEEEEEEGGGTT
T ss_pred CceEEE--EeCCC-CEEEEecCCCcEEEEECCCCEEEEeeccCCCC-c-eeEecCCC-cEEEEecCCCceEEEEEcCCCc
Confidence 455664 54554 45777777899999999988777665543333 3 89999977 567776655 78888865321
Q ss_pred CCCccccccceeeEeec-cCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEE----EeccCCCe--EEEEEccC-
Q 004214 362 DDAEQPMNLKAKAVVAA-HGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVT----FRGHKRGI--WSVEFSPV- 433 (768)
Q Consensus 362 ~~~~~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~----~~~~~~~v--~~v~~s~~- 433 (768)
. ......... ....+.+++++|++..|+++..++.|+.||..++..... ..++...- ..++|+|+
T Consensus 206 ~-------~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~ 278 (409)
T 3hrp_A 206 A-------PTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVD 278 (409)
T ss_dssp C-------EEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTT
T ss_pred e-------eEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCC
Confidence 1 001101112 446678899999555555577788999999987754332 22222222 39999995
Q ss_pred CCEEEEeeCCCcEEEEeCCCCceeEEeecCC---------------CcEEEEEEEeCCCEEEEEe-CCCcEEEEECCCCe
Q 004214 434 DQVVITASGDKTIKIWSISDGSCLKTFEGHT---------------SSVLRASFLTRGAQIVSCG-ADGLVKLWTVRTGE 497 (768)
Q Consensus 434 ~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~---------------~~v~~~~~s~~~~~l~s~~-~dg~i~iwd~~~~~ 497 (768)
+.++++-..++.|+.|+... . +..+.++. .....++++++|+++++-. .++.|+.|++.++.
T Consensus 279 g~lyv~d~~~~~I~~~~~~g-~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~ 356 (409)
T 3hrp_A 279 SNFYMSDQNLSSVYKITPDG-E-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGY 356 (409)
T ss_dssp TEEEEEETTTTEEEEECTTC-C-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTE
T ss_pred CEEEEEeCCCCEEEEEecCC-C-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCE
Confidence 66666667788999999753 3 33444332 4578999999999777777 78899999988887
Q ss_pred EEEEeccC---------------CCcEEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 004214 498 CIATYDKH---------------EDKIWALAVGKKTEMFATGGSDALVNLWHD 535 (768)
Q Consensus 498 ~~~~~~~~---------------~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~ 535 (768)
.. ++.++ -.....++++++|.++++-..++.|+.+.+
T Consensus 357 v~-~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 357 VS-TVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EE-EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred EE-EEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 43 33333 245889999999988888888888887764
No 215
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.38 E-value=1.4e-09 Score=113.21 Aligned_cols=214 Identities=10% Similarity=0.040 Sum_probs=133.2
Q ss_pred EEEEEeCCCcEEEEECCCceeeeeeeCCccce-----EEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccC
Q 004214 254 YLAVATNIEQVQVYDLSSMSCSYVLAGHSEIV-----LCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMG 328 (768)
Q Consensus 254 ~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v-----~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 328 (768)
.+++++.++.+..+|..+++............ ... . ..++. ++.++.+|.+..+|..+++.+........
T Consensus 145 ~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~---~-~~~~~-v~~g~~~g~l~~~d~~tG~~~w~~~~~~~ 219 (376)
T 3q7m_A 145 LVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAP---T-TAFGA-AVVGGDNGRVSAVLMEQGQMIWQQRISQA 219 (376)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCC---E-EETTE-EEECCTTTEEEEEETTTCCEEEEEECCC-
T ss_pred EEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCc---E-EECCE-EEEEcCCCEEEEEECCCCcEEEEEecccC
Confidence 45555556666666766666655544322111 011 1 11344 77788899999999999988766543211
Q ss_pred c----------E-EEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEE
Q 004214 329 A----------V-GAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCT 397 (768)
Q Consensus 329 ~----------v-~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 397 (768)
. + ...... + . .++.++.++.+..+|...+.. ..... ......+.. ++..+++
T Consensus 220 ~~~~~~~~~~~~~~~p~~~-~-~-~v~~~~~~g~l~~~d~~tG~~----------~w~~~--~~~~~~~~~--~~~~l~~ 282 (376)
T 3q7m_A 220 TGSTEIDRLSDVDTTPVVV-N-G-VVFALAYNGNLTALDLRSGQI----------MWKRE--LGSVNDFIV--DGNRIYL 282 (376)
T ss_dssp ----------CCCCCCEEE-T-T-EEEEECTTSCEEEEETTTCCE----------EEEEC--CCCEEEEEE--ETTEEEE
T ss_pred CCCcccccccccCCCcEEE-C-C-EEEEEecCcEEEEEECCCCcE----------Eeecc--CCCCCCceE--ECCEEEE
Confidence 0 0 011111 2 2 577888899999999875421 11111 122333333 4667888
Q ss_pred EeCCCcEEEEeCCCCceEEEEec-cCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCC
Q 004214 398 GSQDRTACVWRLPDLVSVVTFRG-HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRG 476 (768)
Q Consensus 398 ~~~dg~i~i~d~~~~~~~~~~~~-~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~ 476 (768)
++.++.+..+|..+++....... ....+...... +..|++++.+|.|.++|..+|+.+..+......+...... .+
T Consensus 283 ~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~--~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~-~~ 359 (376)
T 3q7m_A 283 VDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLY--NGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVA-AD 359 (376)
T ss_dssp EETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEE-ET
T ss_pred EcCCCeEEEEECCCCcEEEeecccCCCcccCCEEE--CCEEEEEeCCCeEEEEECCCCcEEEEEecCCCcceeCCEE-EC
Confidence 88999999999999998877652 22223333332 5678888899999999999999988877533333322222 35
Q ss_pred CEEEEEeCCCcEEEEE
Q 004214 477 AQIVSCGADGLVKLWT 492 (768)
Q Consensus 477 ~~l~s~~~dg~i~iwd 492 (768)
..|+.++.+|.|+.|+
T Consensus 360 ~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 360 GKLLIQAKDGTVYSIT 375 (376)
T ss_dssp TEEEEEBTTSCEEEEE
T ss_pred CEEEEEeCCCEEEEEe
Confidence 5788899999999987
No 216
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.37 E-value=1e-09 Score=114.27 Aligned_cols=256 Identities=9% Similarity=0.040 Sum_probs=164.8
Q ss_pred CEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcE--
Q 004214 253 QYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAV-- 330 (768)
Q Consensus 253 ~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v-- 330 (768)
..+++++.++.|..+|..+++............... . ..++. ++.++.++.|..+|..+++.+..........
T Consensus 104 ~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p---~-~~~~~-v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~ 178 (376)
T 3q7m_A 104 GHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRP---V-VSDGL-VLIHTSNGQLQALNEADGAVKWTVNLDMPSLSL 178 (376)
T ss_dssp TEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCC---E-EETTE-EEEECTTSEEEEEETTTCCEEEEEECCC-----
T ss_pred CEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCC---E-EECCE-EEEEcCCCeEEEEECCCCcEEEEEeCCCCceee
Confidence 456667777888888888887766554433221111 1 12344 7788899999999999998887765432211
Q ss_pred ---EEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccC-------CCeEEEEEcc--CCCEEEEE
Q 004214 331 ---GAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHG-------KDINSLAVAP--NDSLVCTG 398 (768)
Q Consensus 331 ---~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-------~~i~~~~~s~--~~~~l~~~ 398 (768)
...... + . .++.++.++.+..+|...+.. ........ ..+..+...| .+..++++
T Consensus 179 ~~~~~~~~~-~-~-~v~~g~~~g~l~~~d~~tG~~----------~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~ 245 (376)
T 3q7m_A 179 RGESAPTTA-F-G-AAVVGGDNGRVSAVLMEQGQM----------IWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFAL 245 (376)
T ss_dssp CCCCCCEEE-T-T-EEEECCTTTEEEEEETTTCCE----------EEEEECCC-----------CCCCCCEEETTEEEEE
T ss_pred cCCCCcEEE-C-C-EEEEEcCCCEEEEEECCCCcE----------EEEEecccCCCCcccccccccCCCcEEECCEEEEE
Confidence 122222 2 2 577888899999999875532 11111000 0000011111 34677888
Q ss_pred eCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecC-CCcEEEEEEEeCCC
Q 004214 399 SQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGH-TSSVLRASFLTRGA 477 (768)
Q Consensus 399 ~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~~~ 477 (768)
+.++.+..+|..+++.+..... .....+... +..++.++.++.|..+|..+|+.+...... ...+..... .+.
T Consensus 246 ~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~~--~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~ 319 (376)
T 3q7m_A 246 AYNGNLTALDLRSGQIMWKREL--GSVNDFIVD--GNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNG 319 (376)
T ss_dssp CTTSCEEEEETTTCCEEEEECC--CCEEEEEEE--TTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETT
T ss_pred ecCcEEEEEECCCCcEEeeccC--CCCCCceEE--CCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECC
Confidence 8899999999999988776542 234444443 667888888999999999999988776522 222222222 356
Q ss_pred EEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEE-EEEcCCCCEEEEEeCCCcEEEEE
Q 004214 478 QIVSCGADGLVKLWTVRTGECIATYDKHEDKIWA-LAVGKKTEMFATGGSDALVNLWH 534 (768)
Q Consensus 478 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~-l~~s~~~~~l~s~~~dg~v~vw~ 534 (768)
.|+.++.+|.|.++|..+|+.+..+......+.+ ... .+..|+.++.+|.|..|+
T Consensus 320 ~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~--~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 320 NLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVA--ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEEecCCCcceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence 8888999999999999999998887653444332 222 356788899999999886
No 217
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.36 E-value=1.8e-10 Score=116.05 Aligned_cols=231 Identities=13% Similarity=0.057 Sum_probs=156.7
Q ss_pred ccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCC
Q 004214 282 SEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLS 361 (768)
Q Consensus 282 ~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 361 (768)
.....+.. +.++++.+++++..++.|..|+.. +. ...+..+...+..++++++|. ++++...++.|..|+.. +.
T Consensus 44 ~~~~egp~--~~~~g~~l~~~d~~~~~i~~~~~~-g~-~~~~~~~~~~~~gl~~d~dG~-l~v~~~~~~~v~~~~~~-g~ 117 (305)
T 3dr2_A 44 ATWSEGPA--WWEAQRTLVWSDLVGRRVLGWRED-GT-VDVLLDATAFTNGNAVDAQQR-LVHCEHGRRAITRSDAD-GQ 117 (305)
T ss_dssp CSSEEEEE--EEGGGTEEEEEETTTTEEEEEETT-SC-EEEEEESCSCEEEEEECTTSC-EEEEETTTTEEEEECTT-SC
T ss_pred CcCccCCe--EeCCCCEEEEEECCCCEEEEEeCC-CC-EEEEeCCCCccceeeECCCCC-EEEEECCCCEEEEECCC-CC
Confidence 33444554 677888778888889999999984 44 344555667789999999976 55555566889999875 21
Q ss_pred CCCccccccceee-Eee-ccCCCeEEEEEccCCCEEEE----EeC-------------CCcEEEEeCCCCceEEEEeccC
Q 004214 362 DDAEQPMNLKAKA-VVA-AHGKDINSLAVAPNDSLVCT----GSQ-------------DRTACVWRLPDLVSVVTFRGHK 422 (768)
Q Consensus 362 ~~~~~~~~~~~~~-~~~-~~~~~i~~~~~s~~~~~l~~----~~~-------------dg~i~i~d~~~~~~~~~~~~~~ 422 (768)
..... ... .....++.++++|+|+++++ |.. .+.|..||..+++..... ..
T Consensus 118 --------~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~ 187 (305)
T 3dr2_A 118 --------AHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DL 187 (305)
T ss_dssp --------EEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EE
T ss_pred --------EEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cC
Confidence 00000 000 11245678999999998886 332 246778887666654433 34
Q ss_pred CCeEEEEEccCCCEEEEeeCC------CcEEEEeCCCCcee--EEe-ecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEEC
Q 004214 423 RGIWSVEFSPVDQVVITASGD------KTIKIWSISDGSCL--KTF-EGHTSSVLRASFLTRGAQIVSCGADGLVKLWTV 493 (768)
Q Consensus 423 ~~v~~v~~s~~~~~l~t~~~d------~~i~iwd~~~~~~~--~~~-~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 493 (768)
.....++|+|+++.|+.+... +.|.+|++..+... ..+ .........+++.++|++.+ ++.+| |.+|+.
T Consensus 188 ~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv-~~~~g-v~~~~~ 265 (305)
T 3dr2_A 188 DHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWS-SSGTG-VCVFDS 265 (305)
T ss_dssp SSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEE-CCSSE-EEEECT
T ss_pred CCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEE-ecCCc-EEEECC
Confidence 566889999999988777665 68999998765411 111 11233455688999998544 44554 999997
Q ss_pred CCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEE
Q 004214 494 RTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNL 532 (768)
Q Consensus 494 ~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~v 532 (768)
+++.+..+..+. .+.+++|+|+++.|..++.++..++
T Consensus 266 -~g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~~~ 302 (305)
T 3dr2_A 266 -DGQLLGHIPTPG-TASNCTFDQAQQRLFITGGPCLWML 302 (305)
T ss_dssp -TSCEEEEEECSS-CCCEEEECTTSCEEEEEETTEEEEE
T ss_pred -CCCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeEEEE
Confidence 678888877555 5889999999998888887754443
No 218
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.36 E-value=3.7e-11 Score=122.84 Aligned_cols=219 Identities=12% Similarity=0.026 Sum_probs=149.9
Q ss_pred CCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeE
Q 004214 296 GKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAV 375 (768)
Q Consensus 296 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 375 (768)
++. +..++.++.+..+|.. ++.......+...+.++...+++. +..++.++.|..+|.. +. ....
T Consensus 107 ~~~-l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~--l~vgt~~~~l~~~d~~-g~----------~~~~ 171 (330)
T 3hxj_A 107 EDI-LYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT--IYVGSNDNYLYAINPD-GT----------EKWR 171 (330)
T ss_dssp TTE-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC--EEEECTTSEEEEECTT-SC----------EEEE
T ss_pred CCE-EEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE--EEEEcCCCEEEEECCC-CC----------EeEE
Confidence 344 6677778888888887 666655555555556666666654 6677888889999876 31 1112
Q ss_pred eeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCc
Q 004214 376 VAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGS 455 (768)
Q Consensus 376 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~ 455 (768)
.......+.++.+.+++.+.+ ++ +.+..+| .+++....+......+.++...++|.+. .++.++.|..+|. ++.
T Consensus 172 ~~~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~-v~t~~~gl~~~~~-~g~ 245 (330)
T 3hxj_A 172 FKTNDAITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIY-VTSLDGHLYAINP-DGT 245 (330)
T ss_dssp EECSSCCCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEE-EEETTTEEEEECT-TSC
T ss_pred EecCCCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEE-EEcCCCeEEEECC-CCC
Confidence 222344566777777877554 44 8899999 7777777776666778889998887654 4556788888884 677
Q ss_pred eeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 004214 456 CLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHD 535 (768)
Q Consensus 456 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~ 535 (768)
.+..+......+..+.+.+++ .|..++.+|.|..+|. +++.+..+......+.++...++|. |..++.+|.+++...
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~ 322 (330)
T 3hxj_A 246 EKWRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGT-IYFGTRNGKFYALFN 322 (330)
T ss_dssp EEEEEECSSCCCSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCC-EEEECTTSCEEEEEC
T ss_pred EeEEeeCCCCccccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCE-EEEEcCCCeEEEEec
Confidence 776666444444445554455 5667778888999996 7887777765566677788878876 455888999998876
Q ss_pred CCH
Q 004214 536 STA 538 (768)
Q Consensus 536 ~~~ 538 (768)
...
T Consensus 323 ~~~ 325 (330)
T 3hxj_A 323 LEH 325 (330)
T ss_dssp ---
T ss_pred ccc
Confidence 543
No 219
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.36 E-value=1.6e-09 Score=109.99 Aligned_cols=218 Identities=11% Similarity=-0.029 Sum_probs=149.5
Q ss_pred eecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccc
Q 004214 292 ALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLK 371 (768)
Q Consensus 292 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 371 (768)
+.++++.++++...++.|..||..+++... +. ....+.++++++++. +++ ++.+ .|.+||...+.. .
T Consensus 56 ~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~-~~~~v~~i~~~~dg~-l~v-~~~~-gl~~~d~~~g~~--------~ 122 (326)
T 2ghs_A 56 FDPASGTAWWFNILERELHELHLASGRKTV-HA-LPFMGSALAKISDSK-QLI-ASDD-GLFLRDTATGVL--------T 122 (326)
T ss_dssp EETTTTEEEEEEGGGTEEEEEETTTTEEEE-EE-CSSCEEEEEEEETTE-EEE-EETT-EEEEEETTTCCE--------E
T ss_pred EeCCCCEEEEEECCCCEEEEEECCCCcEEE-EE-CCCcceEEEEeCCCe-EEE-EECC-CEEEEECCCCcE--------E
Confidence 667667778888888999999998876543 22 346799999999976 444 4444 488999764421 0
Q ss_pred eeeEee--ccCCCeEEEEEccCCCEEEEEeC------CCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEe-eC
Q 004214 372 AKAVVA--AHGKDINSLAVAPNDSLVCTGSQ------DRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITA-SG 442 (768)
Q Consensus 372 ~~~~~~--~~~~~i~~~~~s~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~-~~ 442 (768)
...... .....+++++++|+|+++++... .+.|..++ +++.. .+..+......++|+|+++.++.+ +.
T Consensus 123 ~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~~~~~i~~s~dg~~lyv~~~~ 199 (326)
T 2ghs_A 123 LHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADISIPNSICFSPDGTTGYFVDTK 199 (326)
T ss_dssp EEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEESSEEEEEECTTSCEEEEEETT
T ss_pred EEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCcccCCeEEcCCCCEEEEEECC
Confidence 000000 11235789999999997765542 24566666 44433 333334457789999999876554 45
Q ss_pred CCcEEEEeCC--CC-ce-----eEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEE
Q 004214 443 DKTIKIWSIS--DG-SC-----LKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAV 514 (768)
Q Consensus 443 d~~i~iwd~~--~~-~~-----~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~ 514 (768)
++.|.+||+. ++ .. ...+......+..+++.++|++.++...++.|.+|+. +++.+..+..+...+++++|
T Consensus 200 ~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af 278 (326)
T 2ghs_A 200 VNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAF 278 (326)
T ss_dssp TCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEE
T ss_pred CCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEE
Confidence 7899999986 56 32 2233334456788999999988877767788999998 68888888777778999999
Q ss_pred c-CCCCEEEEEeC
Q 004214 515 G-KKTEMFATGGS 526 (768)
Q Consensus 515 s-~~~~~l~s~~~ 526 (768)
+ |++..|+.++.
T Consensus 279 ~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 279 IGPDASRLLVTSA 291 (326)
T ss_dssp ESTTSCEEEEEEB
T ss_pred ecCCCCEEEEEec
Confidence 8 88877655443
No 220
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.36 E-value=1.3e-09 Score=109.32 Aligned_cols=225 Identities=9% Similarity=-0.016 Sum_probs=155.2
Q ss_pred eeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEE
Q 004214 242 ILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVG 321 (768)
Q Consensus 242 i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 321 (768)
.-...|.+.++.++++....+.|..||..++... .+. ....+.++. +.++++. ++ +. ++.|.+||..+++...
T Consensus 15 ~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~~~~i~--~~~dG~l-~v-~~-~~~l~~~d~~~g~~~~ 87 (297)
T 3g4e_A 15 GESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVT-MDAPVSSVA--LRQSGGY-VA-TI-GTKFCALNWKEQSAVV 87 (297)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEE-CSSCEEEEE--EBTTSSE-EE-EE-TTEEEEEETTTTEEEE
T ss_pred ccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEe-CCCceEEEE--ECCCCCE-EE-EE-CCeEEEEECCCCcEEE
Confidence 3466777767777888888899999999887653 222 345677776 6666663 44 34 5689999998887544
Q ss_pred eeec----ccCcEEEEEEecCCCcEEEEEeC---------CCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEE
Q 004214 322 VGTG----HMGAVGAVAFSKKLQNFLVSGSS---------DHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAV 388 (768)
Q Consensus 322 ~~~~----~~~~v~~~~~~~~~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 388 (768)
.... ....+..++++|+|. ++++... ...-.+|.+.... .......+....+.++|
T Consensus 88 ~~~~~~~~~~~~~~di~~d~dG~-l~~~~~~~~~~~~~~~~~~~~l~~~d~~g----------~~~~~~~~~~~pngi~~ 156 (297)
T 3g4e_A 88 LATVDNDKKNNRFNDGKVDPAGR-YFAGTMAEETAPAVLERHQGALYSLFPDH----------HVKKYFDQVDISNGLDW 156 (297)
T ss_dssp EEECCTTCSSEEEEEEEECTTSC-EEEEEEECCSBTTBCCTTCEEEEEECTTS----------CEEEEEEEESBEEEEEE
T ss_pred EEecCCCCCCCCCCCEEECCCCC-EEEecCCcccccccccCCCcEEEEEECCC----------CEEEEeeccccccceEE
Confidence 3332 123578899999987 4444322 1334566554211 11112223345689999
Q ss_pred ccCCCEEE-EEeCCCcEEEEeC--CCCce-----EEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEe
Q 004214 389 APNDSLVC-TGSQDRTACVWRL--PDLVS-----VVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTF 460 (768)
Q Consensus 389 s~~~~~l~-~~~~dg~i~i~d~--~~~~~-----~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~ 460 (768)
+|+++.++ +.+.++.|.+|++ .++.. ...+..+......++++++|++.++....+.|..||..+++.+..+
T Consensus 157 spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i 236 (297)
T 3g4e_A 157 SLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTV 236 (297)
T ss_dssp CTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEE
T ss_pred cCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEE
Confidence 99998665 4456788999987 45543 2222334456789999999998888888889999999999999999
Q ss_pred ecCCCcEEEEEEE-eCCCEEEEEeC
Q 004214 461 EGHTSSVLRASFL-TRGAQIVSCGA 484 (768)
Q Consensus 461 ~~~~~~v~~~~~s-~~~~~l~s~~~ 484 (768)
..+...+++++|. |+++.|+.++.
T Consensus 237 ~~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 237 KLPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp ECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred ECCCCCceEEEEeCCCCCEEEEEcC
Confidence 8887889999998 88887766554
No 221
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.35 E-value=6.2e-11 Score=120.62 Aligned_cols=164 Identities=7% Similarity=-0.054 Sum_probs=98.6
Q ss_pred cCCCEEEEEEeCCCeEEEEeCCC-----ceEEE----eeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCC
Q 004214 294 SSGKILIVTGSKDNSVRLWDSES-----RCCVG----VGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDA 364 (768)
Q Consensus 294 ~~~~~~l~~~~~dg~i~iwd~~~-----~~~~~----~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 364 (768)
+.+...+++.+.||.+.+.++.+ ++... .+.....+. . .+++..++ ..+. +.+.+.|........
T Consensus 172 p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~-~vs~-~~V~viD~~~~~~~v 245 (368)
T 1mda_H 172 PGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLV-WAVA-SSILQGDIPAAGATM 245 (368)
T ss_dssp EEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEE-ECBS-SCCEEEECCSSCCEE
T ss_pred cCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEE-EEcC-CEEEEEECCCCcceE
Confidence 33433455666777777778776 43321 111122333 3 56655444 4444 889999986421100
Q ss_pred cccccccee--eEeeccCCCeEEEEEccCCCEEEEEeC---------CCcEEEEeCCCCceEEEEeccCCCeEEEEEccC
Q 004214 365 EQPMNLKAK--AVVAAHGKDINSLAVAPNDSLVCTGSQ---------DRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPV 433 (768)
Q Consensus 365 ~~~~~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~ 433 (768)
......... ............++++|+++.++++.. ++.+.++|+.+++.+..+.... ....++|+|+
T Consensus 246 ~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~D 324 (368)
T 1mda_H 246 KAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQD 324 (368)
T ss_dssp ECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCS
T ss_pred EEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCC
Confidence 000000000 000001111222689999988887643 2356799999999888876443 6889999999
Q ss_pred CC-EEEEee-CCCcEEEEeCCCCceeEEeecCC
Q 004214 434 DQ-VVITAS-GDKTIKIWSISDGSCLKTFEGHT 464 (768)
Q Consensus 434 ~~-~l~t~~-~d~~i~iwd~~~~~~~~~~~~~~ 464 (768)
|+ ++++.. .++.|.++|+.+++.+.++....
T Consensus 325 g~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~ 357 (368)
T 1mda_H 325 GASDNYANSAGTEVLDIYDAASDQDQSSVELDK 357 (368)
T ss_dssp SSCEEEEEETTTTEEEEEESSSCEEEEECCCCS
T ss_pred CCEEEEEccCCCCeEEEEECCCCcEEEEEECCC
Confidence 97 566666 58999999999999999987543
No 222
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.33 E-value=1.6e-09 Score=113.42 Aligned_cols=153 Identities=10% Similarity=0.065 Sum_probs=106.3
Q ss_pred cceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEe----eecccCcE--EEEEEecCCCcEEEEEeCCCeEEEEe
Q 004214 283 EIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGV----GTGHMGAV--GAVAFSKKLQNFLVSGSSDHTIKVWS 356 (768)
Q Consensus 283 ~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~----~~~~~~~v--~~~~~~~~~~~~l~s~~~dg~i~iwd 356 (768)
..+.+++ +.+.++. |+.+..++.|+.||..++..... ..++...- ..++|+|++..++++-..++.|+.|+
T Consensus 219 ~~p~~ia--v~p~~g~-lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~ 295 (409)
T 3hrp_A 219 GKIGAVA--LDETEEW-LYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKIT 295 (409)
T ss_dssp SCCCBCE--ECTTSSE-EEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEEC
T ss_pred CCcEEEE--EeCCCCe-EEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEe
Confidence 3344554 5564666 44467788999999987754332 22222222 38999997666777778889999998
Q ss_pred CCCCCCCCccccccceeeEeecc---------------CCCeEEEEEccCCCEEEEEe-CCCcEEEEeCCCCceEEEEec
Q 004214 357 FDGLSDDAEQPMNLKAKAVVAAH---------------GKDINSLAVAPNDSLVCTGS-QDRTACVWRLPDLVSVVTFRG 420 (768)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~---------------~~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~ 420 (768)
.... .....++ -.....++++|+|+++++-. .++.|+.|++.++.. ..+.+
T Consensus 296 ~~g~------------~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v-~~~~g 362 (409)
T 3hrp_A 296 PDGE------------CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV-STVAG 362 (409)
T ss_dssp TTCC------------EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE-EEEEE
T ss_pred cCCC------------EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE-EEEeC
Confidence 7632 0111111 24578999999999877777 789999999877764 44444
Q ss_pred c---------------CCCeEEEEEccCCCEEEEeeCCCcEEEEeC
Q 004214 421 H---------------KRGIWSVEFSPVDQVVITASGDKTIKIWSI 451 (768)
Q Consensus 421 ~---------------~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~ 451 (768)
+ -.....++++|++.++++-..++.|+.+++
T Consensus 363 ~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 363 QVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp CTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 4 245789999999988888888888988775
No 223
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.33 E-value=9e-10 Score=123.09 Aligned_cols=269 Identities=11% Similarity=0.035 Sum_probs=181.0
Q ss_pred CCEEEEEeCCCcEEEEECCCceeeeeeeCC-c----cceEEEeeeeecCCCEEEEEEeC------CCeEEEEeCCCceEE
Q 004214 252 EQYLAVATNIEQVQVYDLSSMSCSYVLAGH-S----EIVLCLDTCALSSGKILIVTGSK------DNSVRLWDSESRCCV 320 (768)
Q Consensus 252 ~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~-~----~~v~~l~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~ 320 (768)
+..+++++.++.+..+|..+++.+..+..+ . ..+.+. ....++. ++.++. +|.|+.||..+++.+
T Consensus 128 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~---p~v~~~~-v~v~~~~~~~~~~g~v~a~D~~tG~~~ 203 (677)
T 1kb0_A 128 KGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGA---PRVFKGK-VIIGNGGAEYGVRGYITAYDAETGERK 203 (677)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSC---CEEETTE-EEECCBCTTTCCBCEEEEEETTTCCEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccC---cEEECCE-EEEEecccccCCCCEEEEEECCCCcEE
Confidence 347778888899999999999988777654 1 111111 1112444 444443 799999999999988
Q ss_pred EeeecccCc--------------------------------EEEEEEecCCCcEEEEEeCCC------------------
Q 004214 321 GVGTGHMGA--------------------------------VGAVAFSKKLQNFLVSGSSDH------------------ 350 (768)
Q Consensus 321 ~~~~~~~~~--------------------------------v~~~~~~~~~~~~l~s~~~dg------------------ 350 (768)
..+...... ...++++|++. .++.++.++
T Consensus 204 W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~-~vy~~~~~~~~w~~~~~~~~~gd~~~~ 282 (677)
T 1kb0_A 204 WRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELN-TMYVGTGNGSPWSHKVRSPKGGDNLYL 282 (677)
T ss_dssp EEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTT-EEEEECCCEESSCHHHHSTTCCCCTTT
T ss_pred EEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCC-EEEEECCCCccccCCCCCccCCCCeee
Confidence 766532211 12467888755 677776654
Q ss_pred -eEEEEeCCCCCCCCccccccceeeEeec--c-------CCCeEEEEEccCC---CEEEEEeCCCcEEEEeCCCCceEEE
Q 004214 351 -TIKVWSFDGLSDDAEQPMNLKAKAVVAA--H-------GKDINSLAVAPND---SLVCTGSQDRTACVWRLPDLVSVVT 417 (768)
Q Consensus 351 -~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~-------~~~i~~~~~s~~~---~~l~~~~~dg~i~i~d~~~~~~~~~ 417 (768)
+|..+|..++. ....... | ......+....+| ..+++++.+|.++++|..+++.+..
T Consensus 283 ~sv~AlD~~TG~----------~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~ 352 (677)
T 1kb0_A 283 ASIVALDPDTGK----------YKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISA 352 (677)
T ss_dssp TEEEEECTTTCC----------EEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEE
T ss_pred EEEEEEECCCCC----------EEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEecc
Confidence 48888887553 2222111 1 1122333444477 6899999999999999999998876
Q ss_pred EeccC-----------CCe------------------------EEEEEccCCCEEEEeeC--------------------
Q 004214 418 FRGHK-----------RGI------------------------WSVEFSPVDQVVITASG-------------------- 442 (768)
Q Consensus 418 ~~~~~-----------~~v------------------------~~v~~s~~~~~l~t~~~-------------------- 442 (768)
+.... .++ ..++|+|++.++++...
T Consensus 353 ~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~ 432 (677)
T 1kb0_A 353 KNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPG 432 (677)
T ss_dssp EESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTT
T ss_pred ccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccc
Confidence 65221 111 15788999888877543
Q ss_pred -----------------------CCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEE
Q 004214 443 -----------------------DKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECI 499 (768)
Q Consensus 443 -----------------------d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 499 (768)
.|.|..||+.+++.+.++. +..++....++.++..++.++.||.+++||..+|+.+
T Consensus 433 ~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~l 511 (677)
T 1kb0_A 433 KPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKL 511 (677)
T ss_dssp STTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred ccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecC-CCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCcee
Confidence 2789999999999988887 3444555667788889999999999999999999999
Q ss_pred EEeccCCC-cEEEEEEcCCCCEEEEE-eC----------------CCcEEEEEcC
Q 004214 500 ATYDKHED-KIWALAVGKKTEMFATG-GS----------------DALVNLWHDS 536 (768)
Q Consensus 500 ~~~~~~~~-~v~~l~~s~~~~~l~s~-~~----------------dg~v~vw~~~ 536 (768)
.++....+ ....+.+..+|+.+++. +. .+.+..|.+.
T Consensus 512 w~~~~~~~~~~~p~~y~~~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~ 566 (677)
T 1kb0_A 512 WEAPTGTGVVAAPSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVG 566 (677)
T ss_dssp EEEECSSCCCSCCEEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEET
T ss_pred eeeeCCCCcccCCEEEEeCCEEEEEEeccCCccccccccccccCCCCeEEEEecc
Confidence 99874432 22334566788754432 22 3567777765
No 224
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.32 E-value=3.1e-11 Score=122.93 Aligned_cols=172 Identities=14% Similarity=0.093 Sum_probs=127.1
Q ss_pred ceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCce-----------EEEeeecccCcEEEEEEecCCCcEEEEEeCCCeE
Q 004214 284 IVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC-----------CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTI 352 (768)
Q Consensus 284 ~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----------~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i 352 (768)
.+..++ ..+..+. +++|+.+ .+.+|++.... .... ..+.. |+.++| ++. +|+++ .++.|
T Consensus 39 ~~nlLa--is~~~gl-l~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~-~~lp~-V~~l~f--d~~-~L~v~-~~~~l 108 (388)
T 1xip_A 39 SLQNLD--ISNSKSL-FVAASGS-KAVVGELQLLRDHITSDSTPLTFKWE-KEIPD-VIFVCF--HGD-QVLVS-TRNAL 108 (388)
T ss_dssp CCBCEE--EETTTTE-EEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEE-EECTT-EEEEEE--ETT-EEEEE-ESSEE
T ss_pred cccEEE--EcCCCCE-EEEeCCC-EEEEEEhhHhhhhhccccccccceEE-eeCCC-eeEEEE--CCC-EEEEE-cCCcE
Confidence 455554 5566665 8888877 45569854322 1112 23556 999999 544 67777 88999
Q ss_pred EEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEcc
Q 004214 353 KVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSP 432 (768)
Q Consensus 353 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~ 432 (768)
++||+.... .......|...+.++.+.+.. +++++.||.+.+||+.++.... +...|+|++|||
T Consensus 109 ~v~dv~sl~----------~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSp 172 (388)
T 1xip_A 109 YSLDLEELS----------EFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTN 172 (388)
T ss_dssp EEEESSSTT----------CEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEEE----EEESEEEEEECS
T ss_pred EEEEchhhh----------ccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCcccc----ccCCceEEEEcC
Confidence 999998542 222345566778887766543 8889999999999999877643 456899999999
Q ss_pred CCCEEEEeeCCCcEEEEeCCCCce--eEEe------e---cCCCcEEEEEEEeCCCEEEEEe
Q 004214 433 VDQVVITASGDKTIKIWSISDGSC--LKTF------E---GHTSSVLRASFLTRGAQIVSCG 483 (768)
Q Consensus 433 ~~~~l~t~~~d~~i~iwd~~~~~~--~~~~------~---~~~~~v~~~~~s~~~~~l~s~~ 483 (768)
+| ++.|..||++++|+...+.+ .+++ . +|...|.+++|.+++.++++-+
T Consensus 173 kG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 173 SQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp SE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred Cc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 99 67899999999999877775 5666 2 4789999999999999988743
No 225
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.31 E-value=5.3e-10 Score=127.61 Aligned_cols=242 Identities=12% Similarity=-0.040 Sum_probs=156.2
Q ss_pred CceeEEEEecCCCCEEEEEeCC-----CcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCC-------
Q 004214 240 EEILDLKFLGEEEQYLAVATNI-----EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDN------- 307 (768)
Q Consensus 240 ~~i~~~~~~~~~~~~l~~~~~~-----~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg------- 307 (768)
..+...+|+ +++++++.+..+ ..|++||+.+++..... .+...+..+. ++++ +. |+.++.++
T Consensus 163 ~~~~~~~~S-PDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~--wspD-~~-l~~~~~~~~~~~~~~ 236 (741)
T 1yr2_A 163 TALDAWAAS-DDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLA--WLGN-DA-LLYSRFAEPKEGQAF 236 (741)
T ss_dssp EEEEEEEEC-TTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCE--ESTT-SE-EEEEECCCC------
T ss_pred EEEEeEEEC-CCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEE--EECC-CE-EEEEEecCccccccc
Confidence 356778888 577777766543 35999999999875431 1111122343 6677 66 55555544
Q ss_pred -------eEEEEeCCCce----EEEeeecccCcEEEEEEecCCCcEEEEEeCC-----CeEEEEeCCCCCCCCccccccc
Q 004214 308 -------SVRLWDSESRC----CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSD-----HTIKVWSFDGLSDDAEQPMNLK 371 (768)
Q Consensus 308 -------~i~iwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~ 371 (768)
.|++|++.++. .+.....+...+..+.|+|+|+. ++..+.+ ..|.+||+..+. ..
T Consensus 237 ~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~-l~~~~~~~~~~~~~l~~~d~~~~~--------~~ 307 (741)
T 1yr2_A 237 QALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRW-VVITSSEGTDPVNTVHVARVTNGK--------IG 307 (741)
T ss_dssp --CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCE-EEEEEECTTCSCCEEEEEEEETTE--------EC
T ss_pred ccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCE-EEEEEEccCCCcceEEEEECCCCC--------Cc
Confidence 38999987764 33333334446889999999884 5544433 479999986431 01
Q ss_pred eeeEeeccCCCeEEEEEccCCCEEEEEeCC----CcEEEEeCCCC--ceEEEEeccCCCeEEEEEccCCCEEEEeeCCCc
Q 004214 372 AKAVVAAHGKDINSLAVAPNDSLVCTGSQD----RTACVWRLPDL--VSVVTFRGHKRGIWSVEFSPVDQVVITASGDKT 445 (768)
Q Consensus 372 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d----g~i~i~d~~~~--~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~ 445 (768)
....+..+...+... ++|+|+.|+..+.+ +.|.+||+.++ .....+..+...+..++++ ++.++++...|+.
T Consensus 308 ~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~ 385 (741)
T 1yr2_A 308 PVTALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAK 385 (741)
T ss_dssp CCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTE
T ss_pred ccEEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCE
Confidence 012223333444444 35889888887764 45999999875 3333444455567778887 5678888888888
Q ss_pred EEEEeCC-CCceeEEeec-CCCcEEEEEEEeCCCEEEEE----eCCCcEEEEECCCCeE
Q 004214 446 IKIWSIS-DGSCLKTFEG-HTSSVLRASFLTRGAQIVSC----GADGLVKLWTVRTGEC 498 (768)
Q Consensus 446 i~iwd~~-~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~----~~dg~i~iwd~~~~~~ 498 (768)
.+||.+. ++.....+.. +...+..+.++|+++.|+.. ...++|++||+.+++.
T Consensus 386 ~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 386 SQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp EEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred EEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 7777554 4666677764 36778889999998866532 2347899999988873
No 226
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.31 E-value=4e-11 Score=122.55 Aligned_cols=216 Identities=16% Similarity=0.043 Sum_probs=139.2
Q ss_pred EEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEE
Q 004214 254 YLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAV 333 (768)
Q Consensus 254 ~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 333 (768)
.+.+++.++.+..+|.. +........+...+.++. . ..++. +..++.++.|..+|.. ++....+......+.++
T Consensus 109 ~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~--~-~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~ 182 (330)
T 3hxj_A 109 ILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPI--V-SEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAA 182 (330)
T ss_dssp EEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCE--E-CTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCC
T ss_pred EEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeE--E-cCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeee
Confidence 45555555666666666 554444443333333332 2 22344 6778888999999998 77766666556667777
Q ss_pred EEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCc
Q 004214 334 AFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLV 413 (768)
Q Consensus 334 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~ 413 (768)
...+++. +..++ +.+..+| ..+. ...........+.++..+++|. +.+++.++.+..++ .+++
T Consensus 183 ~~d~~g~--l~v~t--~~l~~~d-~~g~----------~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~-~~g~ 245 (330)
T 3hxj_A 183 SIGKDGT--IYFGS--DKVYAIN-PDGT----------EKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAIN-PDGT 245 (330)
T ss_dssp EECTTCC--EEEES--SSEEEEC-TTSC----------EEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEEC-TTSC
T ss_pred EEcCCCE--EEEEe--CEEEEEC-CCCc----------EEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEEC-CCCC
Confidence 7777755 45555 7788888 4321 2222223345677888888875 55567778888887 4566
Q ss_pred eEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEEC
Q 004214 414 SVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTV 493 (768)
Q Consensus 414 ~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 493 (768)
.+..+......+.++.+.+++. |..++.+|.|..+|. +++.+..+......+.++...++|+ |..++.+|.+++...
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~ 322 (330)
T 3hxj_A 246 EKWRFKTGKRIESSPVIGNTDT-IYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGT-IYFGTRNGKFYALFN 322 (330)
T ss_dssp EEEEEECSSCCCSCCEECTTSC-EEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCC-EEEECTTSCEEEEEC
T ss_pred EeEEeeCCCCccccceEcCCCe-EEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCE-EEEEcCCCeEEEEec
Confidence 6666665544455566666665 556777788999996 7887777765556666677667765 566888999998765
Q ss_pred CC
Q 004214 494 RT 495 (768)
Q Consensus 494 ~~ 495 (768)
+.
T Consensus 323 ~~ 324 (330)
T 3hxj_A 323 LE 324 (330)
T ss_dssp --
T ss_pred cc
Confidence 43
No 227
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.30 E-value=2.5e-10 Score=116.22 Aligned_cols=280 Identities=11% Similarity=-0.048 Sum_probs=175.3
Q ss_pred cEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEE--------eCCCcEEEEECCCCeeEEEecCc-------cc
Q 004214 11 KVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSG--------SDDATVRVWDLLAKKCVATLDKH-------FS 75 (768)
Q Consensus 11 ~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg--------~~dg~I~iWd~~~~~~~~~l~~h-------~~ 75 (768)
.|.|+|..+++.+.++.....+ .++|+||+++.+++.. ..++.|.+||+.+++.+.++..+ ..
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~ 124 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP 124 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCC
Confidence 8889999999999999865566 7999999998444442 24788999999999999998643 12
Q ss_pred eeEEEEEcCCCCEEEEEeC--CCeEEE--EECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcce
Q 004214 76 RVTSMAITSDGSTLISAGR--DKVVNL--WDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEI 151 (768)
Q Consensus 76 ~V~~l~fs~d~~~L~s~~~--dg~i~v--Wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (768)
....++|+|||++|+.+.. +..|.+ +|..+ +..++.... ..+.|.+. .
T Consensus 125 ~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~---~~~~p~g~----------------------~ 176 (368)
T 1mda_H 125 RVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC---FHIHPGAA----------------------A 176 (368)
T ss_dssp CTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC---CCCEEEET----------------------T
T ss_pred CcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc---eEEccCCC----------------------e
Confidence 4678999999999998864 467888 99877 344432211 11122221 1
Q ss_pred EEEEeeCCcEEEEEEcCC-----ceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccc
Q 004214 152 HFITVGERGIVRMWNADS-----ACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKK 226 (768)
Q Consensus 152 ~~~~~~~~g~i~iwd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~ 226 (768)
.+++.+.+|.+...++.+ +....... . .... ..... . .+.+..++.++. +.+.+.+........
T Consensus 177 ~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t--~--~i~v--g~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v 245 (368)
T 1mda_H 177 THYLGSCPASLAASDLAAAPAAAGIVGAQCT--G--AQNC--SSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATM 245 (368)
T ss_dssp EEECCCCTTSCEEEECCSSCCCCEECCCCSC--T--TSCB--CSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEE
T ss_pred EEEEEcCCCCEEEEECccccccCCeEEEEee--e--eeeC--CCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceE
Confidence 456677788888888876 33221110 0 0000 11111 2 566677666666 888888775321100
Q ss_pred ee-eEEEee---ecc-cCCceeEEEEecCCCCEEEEEeC---------CCcEEEEECCCceeeeeeeCCccceEEEeeee
Q 004214 227 ME-LILSKR---LVG-YNEEILDLKFLGEEEQYLAVATN---------IEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCA 292 (768)
Q Consensus 227 ~~-~~~~~~---~~~-~~~~i~~~~~~~~~~~~l~~~~~---------~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~ 292 (768)
.. ...... ..+ .......+.+.+ ++..+.++.. .+.+.++|+.+.+.+..+.... ...++. +
T Consensus 246 ~~~~~~~~~~~~~~~~~p~g~~~v~~s~-dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~--~ 321 (368)
T 1mda_H 246 KAAIDGNESGRKADNFRSAGFQMVAKLK-NTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAII--A 321 (368)
T ss_dssp ECCCCSSCTHHHHTTEEECSSSCEEEET-TTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEE--E
T ss_pred EEEEEeccccccccccccCcceeeEEcC-CCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEE--E
Confidence 00 000000 000 001111145665 4555555432 2456799999999888876544 455665 7
Q ss_pred ecCCCEEEEEEe-CCCeEEEEeCCCceEEEeeecccCcEEEEEEe
Q 004214 293 LSSGKILIVTGS-KDNSVRLWDSESRCCVGVGTGHMGAVGAVAFS 336 (768)
Q Consensus 293 ~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~ 336 (768)
.++++.++++.. .++.|.++|+.+++.+..+.....+ ..+++.
T Consensus 322 s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~P-~~i~~~ 365 (368)
T 1mda_H 322 AQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGP-ESLSVQ 365 (368)
T ss_dssp CCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSCC-CEEECC
T ss_pred CCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCCC-CEEEee
Confidence 788887678877 6999999999999999888754432 344443
No 228
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.28 E-value=1.7e-09 Score=121.15 Aligned_cols=258 Identities=11% Similarity=0.050 Sum_probs=168.8
Q ss_pred CCEEEEEeCCCcEEEEECCCceeeeeeeCC--ccceEEEeeeeecCCCEEEEEEe------CCCeEEEEeCCCceEEEee
Q 004214 252 EQYLAVATNIEQVQVYDLSSMSCSYVLAGH--SEIVLCLDTCALSSGKILIVTGS------KDNSVRLWDSESRCCVGVG 323 (768)
Q Consensus 252 ~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~--~~~v~~l~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~ 323 (768)
+..+++++.++.+..+|..+++.+...... ......+.....-.++. ++.++ .+|.|+.||..+|+.+..+
T Consensus 121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 199 (689)
T 1yiq_A 121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGK-VVIGNGGAEFGVRGYVTAYDAETGKEAWRF 199 (689)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTE-EEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCE-EEEEeCCCccCCCCEEEEEECCCCcEEEEe
Confidence 347778888899999999999988766542 11111110001111344 44443 3789999999999988766
Q ss_pred eccc-------------------------------CcEEEEEEecCCCcEEEEEeCCCe-------------------EE
Q 004214 324 TGHM-------------------------------GAVGAVAFSKKLQNFLVSGSSDHT-------------------IK 353 (768)
Q Consensus 324 ~~~~-------------------------------~~v~~~~~~~~~~~~l~s~~~dg~-------------------i~ 353 (768)
.... ..-..++++|+.. +++.++.++. |.
T Consensus 200 ~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~-~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~ 278 (689)
T 1yiq_A 200 YTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELN-LLYIGVGNGSLWDPKWRSQAKGDNLFLSSIV 278 (689)
T ss_dssp ESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTT-EEEEECCCEESSCHHHHHTTCSCCTTTTEEE
T ss_pred cccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCC-EEEEeCCCCCccccCCCCCCCCCceeeeeEE
Confidence 4210 0112567888755 6778877764 88
Q ss_pred EEeCCCCCCCCccccccceeeEeec--cC-------CCeEEEEEccCCC---EEEEEeCCCcEEEEeCCCCceEEEEecc
Q 004214 354 VWSFDGLSDDAEQPMNLKAKAVVAA--HG-------KDINSLAVAPNDS---LVCTGSQDRTACVWRLPDLVSVVTFRGH 421 (768)
Q Consensus 354 iwd~~~~~~~~~~~~~~~~~~~~~~--~~-------~~i~~~~~s~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 421 (768)
.||..++. ....... |. ..+.......+|+ .++.++.+|.++++|..+++.+......
T Consensus 279 AlD~~TG~----------~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~ 348 (689)
T 1yiq_A 279 AVNADTGE----------YVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIV 348 (689)
T ss_dssp EEETTTCC----------EEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESS
T ss_pred EEEccCCc----------eeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEecccccc
Confidence 99988653 2222211 11 1222223333565 7889999999999999999987543211
Q ss_pred CC---------------------------------------CeEEEEEccCCCEEEEeeC--------------------
Q 004214 422 KR---------------------------------------GIWSVEFSPVDQVVITASG-------------------- 442 (768)
Q Consensus 422 ~~---------------------------------------~v~~v~~s~~~~~l~t~~~-------------------- 442 (768)
.. .-..++|+|+..++++...
T Consensus 349 ~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~ 428 (689)
T 1yiq_A 349 PQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKS 428 (689)
T ss_dssp CCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTT
T ss_pred ccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeecccccccccccc
Confidence 10 0113788998888876532
Q ss_pred -------------------------CCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCe
Q 004214 443 -------------------------DKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE 497 (768)
Q Consensus 443 -------------------------d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~ 497 (768)
+|.|+.||+.+|+.+.++..+. +.....++..+..++.++.||.|+.||.++|+
T Consensus 429 ~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~ 507 (689)
T 1yiq_A 429 MYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAADTGE 507 (689)
T ss_dssp SCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred ccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCC-CccCccceECCCEEEEECCCCcEEEEECCCCc
Confidence 3789999999999998887543 33344677788899999999999999999999
Q ss_pred EEEEeccCCCcE-EEEEEcCCCCEEE
Q 004214 498 CIATYDKHEDKI-WALAVGKKTEMFA 522 (768)
Q Consensus 498 ~~~~~~~~~~~v-~~l~~s~~~~~l~ 522 (768)
.+.++....+.+ .-+.+..+|+..+
T Consensus 508 ~lw~~~~~~~~~~~p~ty~~~G~qyv 533 (689)
T 1yiq_A 508 KLWEQPAASGVMAAPVTYSVDGEQYV 533 (689)
T ss_dssp EEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred cceeeeCCCCcccCceEEEECCEEEE
Confidence 999887543322 3456677887443
No 229
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.27 E-value=7.6e-10 Score=123.66 Aligned_cols=280 Identities=9% Similarity=0.034 Sum_probs=188.4
Q ss_pred CCEEEEEeCCCcEEEEECCCceeeeeeeCCccc----------e-EEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEE
Q 004214 252 EQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEI----------V-LCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCV 320 (768)
Q Consensus 252 ~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~----------v-~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 320 (768)
+..+++++.++.|.-+|..+++.+..+...... + ..+. ..++. ++.++.|+.|..+|..+++.+
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a----~~~~~-v~v~~~dg~l~alD~~tG~~~ 151 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVA----LWKGK-VYVGAWDGRLIALDAATGKEV 151 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCE----EETTE-EEEECTTSEEEEEETTTCCEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCce----EECCE-EEEEcCCCEEEEEECCCCCEE
Confidence 446777777899999999999998777543221 0 1111 12444 788889999999999999998
Q ss_pred Eeeecc-c----CcEEE-EEEecCCCcEEEEEeC------CCeEEEEeCCCCCCCCccccccce----------------
Q 004214 321 GVGTGH-M----GAVGA-VAFSKKLQNFLVSGSS------DHTIKVWSFDGLSDDAEQPMNLKA---------------- 372 (768)
Q Consensus 321 ~~~~~~-~----~~v~~-~~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~---------------- 372 (768)
..+..+ . ..+.+ ..+. + . .++.++. +|.|..||..++...-........
T Consensus 152 W~~~~~~~~~~~~~~~~~p~v~-~-~-~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~ 228 (677)
T 1kb0_A 152 WHQNTFEGQKGSLTITGAPRVF-K-G-KVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAART 228 (677)
T ss_dssp EEEETTTTCCSSCBCCSCCEEE-T-T-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTT
T ss_pred eeecCCcCcCcCcccccCcEEE-C-C-EEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccccccccccc
Confidence 877654 1 11111 1111 2 3 3555543 689999998866421110000000
Q ss_pred ----eeEe--eccCCCeEEEEEccCCCEEEEEeCCC-------------------cEEEEeCCCCceEEEEeccC-----
Q 004214 373 ----KAVV--AAHGKDINSLAVAPNDSLVCTGSQDR-------------------TACVWRLPDLVSVVTFRGHK----- 422 (768)
Q Consensus 373 ----~~~~--~~~~~~i~~~~~s~~~~~l~~~~~dg-------------------~i~i~d~~~~~~~~~~~~~~----- 422 (768)
.... .........++++|++.++++++.++ .|..+|..+++.+..++...
T Consensus 229 w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd 308 (677)
T 1kb0_A 229 WDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWD 308 (677)
T ss_dssp SCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSC
T ss_pred ccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccc
Confidence 0000 01222234678999999999888764 49999999999988876421
Q ss_pred ----CCeEEEEEccCC---CEEEEeeCCCcEEEEeCCCCceeEEeecCCC-----------cE-----------------
Q 004214 423 ----RGIWSVEFSPVD---QVVITASGDKTIKIWSISDGSCLKTFEGHTS-----------SV----------------- 467 (768)
Q Consensus 423 ----~~v~~v~~s~~~---~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~-----------~v----------------- 467 (768)
.....+....+| ..++.++.+|.++++|..+|+.+..+..... ++
T Consensus 309 ~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~ 388 (677)
T 1kb0_A 309 YTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPG 388 (677)
T ss_dssp CCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSC
T ss_pred cccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcC
Confidence 122333444577 6899999999999999999999877652210 11
Q ss_pred -------EEEEEEeCCCEEEEEeC-------------------------------------------CCcEEEEECCCCe
Q 004214 468 -------LRASFLTRGAQIVSCGA-------------------------------------------DGLVKLWTVRTGE 497 (768)
Q Consensus 468 -------~~~~~s~~~~~l~s~~~-------------------------------------------dg~i~iwd~~~~~ 497 (768)
..++|+|++.++++... .|.|..||+.+|+
T Consensus 389 ~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~ 468 (677)
T 1kb0_A 389 PYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQK 468 (677)
T ss_dssp TTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTE
T ss_pred cccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCc
Confidence 14678898888877543 2789999999999
Q ss_pred EEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCHHH
Q 004214 498 CIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAE 540 (768)
Q Consensus 498 ~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~~~ 540 (768)
.+.++. +..++++..+..++..++.++.||.+++||..+++.
T Consensus 469 ~~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~ 510 (677)
T 1kb0_A 469 AAWSVE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEK 510 (677)
T ss_dssp EEEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred EEeecC-CCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCce
Confidence 998886 445555566777888899999999999999988764
No 230
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.27 E-value=2.3e-10 Score=117.28 Aligned_cols=190 Identities=12% Similarity=0.030 Sum_probs=109.8
Q ss_pred eEEEEecCCCCEEEEEe---CCCcEEEEECCCceeeeeeeCCccceE-EEeeeeecCCCEEEEEEeCCCeEEEEeCCCce
Q 004214 243 LDLKFLGEEEQYLAVAT---NIEQVQVYDLSSMSCSYVLAGHSEIVL-CLDTCALSSGKILIVTGSKDNSVRLWDSESRC 318 (768)
Q Consensus 243 ~~~~~~~~~~~~l~~~~---~~~~i~i~d~~~~~~~~~~~~~~~~v~-~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 318 (768)
.++++.+.++..+++.. .++.|.+||..+++..+.+.+|..... ... +..++.. +.+.+.+|.+..|.
T Consensus 123 ~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~--~~~~g~~-~~~~~~~g~~~~~~----- 194 (343)
T 2qe8_A 123 NDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDID--LVIDGVP-VQIGQPDGTVIRPH----- 194 (343)
T ss_dssp CEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCC--CEETTEE-CBEECTTSCEECCC-----
T ss_pred ceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccc--eeECCEE-EEeccCCCceecee-----
Confidence 34444433333334333 468899999998887766655432111 011 2233433 66667777776553
Q ss_pred EEEeeecccCcEEEEEEecCCCcEEEEEeCCC-eEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEE
Q 004214 319 CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDH-TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCT 397 (768)
Q Consensus 319 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 397 (768)
..+..++++|+++ .|+.+..++ .+..++.....................++......++++++|.++++
T Consensus 195 ---------~~~~gia~s~dg~-~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va 264 (343)
T 2qe8_A 195 ---------LGVNGIVLDAENE-WLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVG 264 (343)
T ss_dssp ---------CCEEEEEECTTSC-EEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEE
T ss_pred ---------cccceeEeccCCC-EEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEE
Confidence 2357899999987 455555544 44444432100000000000000011233345678999999999999
Q ss_pred EeCCCcEEEEeCCCCceEEEEec-cCCCeEEEEEccCCCEEEEeeCCCcEEEEe
Q 004214 398 GSQDRTACVWRLPDLVSVVTFRG-HKRGIWSVEFSPVDQVVITASGDKTIKIWS 450 (768)
Q Consensus 398 ~~~dg~i~i~d~~~~~~~~~~~~-~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd 450 (768)
...++.|.+||..+++....... +...+++++|.++++++++.+..+.+.+|.
T Consensus 265 ~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 265 DLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSAPLN 318 (343)
T ss_dssp EGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGSGGGB
T ss_pred ccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCccccccccc
Confidence 88899999999856654333332 245689999999999888887655554443
No 231
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.25 E-value=1.4e-08 Score=103.17 Aligned_cols=221 Identities=12% Similarity=0.041 Sum_probs=148.4
Q ss_pred eEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEe
Q 004214 243 LDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGV 322 (768)
Q Consensus 243 ~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 322 (768)
....|.+.++.++++...++.|..||..++.... +. ....+.++. +.+++.. ++ ++.+ .|.+||..+++....
T Consensus 52 egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~-~~~~v~~i~--~~~dg~l-~v-~~~~-gl~~~d~~~g~~~~~ 124 (326)
T 2ghs_A 52 EGPTFDPASGTAWWFNILERELHELHLASGRKTV-HA-LPFMGSALA--KISDSKQ-LI-ASDD-GLFLRDTATGVLTLH 124 (326)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EE-CSSCEEEEE--EEETTEE-EE-EETT-EEEEEETTTCCEEEE
T ss_pred cCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EE-CCCcceEEE--EeCCCeE-EE-EECC-CEEEEECCCCcEEEE
Confidence 4567777667777888788999999998876542 22 235677776 5566553 44 3444 599999988775443
Q ss_pred eec----ccCcEEEEEEecCCCcEEEEEeC------CCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCC
Q 004214 323 GTG----HMGAVGAVAFSKKLQNFLVSGSS------DHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND 392 (768)
Q Consensus 323 ~~~----~~~~v~~~~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 392 (768)
... ....+..++++|+|. ++++... .+.|..++ . + . ......+....+.++|+|++
T Consensus 125 ~~~~~~~~~~~~~~i~~d~~G~-l~v~~~~~~~~~~~~~l~~~~-~-g--------~---~~~~~~~~~~~~~i~~s~dg 190 (326)
T 2ghs_A 125 AELESDLPGNRSNDGRMHPSGA-LWIGTMGRKAETGAGSIYHVA-K-G--------K---VTKLFADISIPNSICFSPDG 190 (326)
T ss_dssp ECSSTTCTTEEEEEEEECTTSC-EEEEEEETTCCTTCEEEEEEE-T-T--------E---EEEEEEEESSEEEEEECTTS
T ss_pred eeCCCCCCCCCCCCEEECCCCC-EEEEeCCCcCCCCceEEEEEe-C-C--------c---EEEeeCCCcccCCeEEcCCC
Confidence 221 123588999999987 4444332 23444444 2 1 1 11111223456789999999
Q ss_pred CEEEEE-eCCCcEEEEeCC--CC-ce-----EEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecC
Q 004214 393 SLVCTG-SQDRTACVWRLP--DL-VS-----VVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGH 463 (768)
Q Consensus 393 ~~l~~~-~~dg~i~i~d~~--~~-~~-----~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~ 463 (768)
+.++.+ +.++.|.+|++. ++ .. ...+......+..++++++|++.++...++.|.+||. +++.+..+..+
T Consensus 191 ~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~ 269 (326)
T 2ghs_A 191 TTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVP 269 (326)
T ss_dssp CEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECS
T ss_pred CEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECC
Confidence 876555 456889999986 55 31 2222223455788999999998887777789999998 68888888877
Q ss_pred CCcEEEEEEE-eCCCEEEEEeCC
Q 004214 464 TSSVLRASFL-TRGAQIVSCGAD 485 (768)
Q Consensus 464 ~~~v~~~~~s-~~~~~l~s~~~d 485 (768)
...+++++|+ ++++.|+.++..
T Consensus 270 ~~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 270 GKQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp CSBEEEEEEESTTSCEEEEEEBC
T ss_pred CCCcEEEEEecCCCCEEEEEecC
Confidence 7789999998 888877655443
No 232
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.25 E-value=1e-09 Score=122.96 Aligned_cols=286 Identities=10% Similarity=0.037 Sum_probs=183.4
Q ss_pred CCEEEEEeCCCcEEEEECCCceeeeeeeCCccce----E-E--EeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeee
Q 004214 252 EQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIV----L-C--LDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGT 324 (768)
Q Consensus 252 ~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v----~-~--l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 324 (768)
+..+++++.++.|..+|..+++.+..+..+.... . | +.......++. ++.++.|+.|..+|..+|+.+..+.
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-v~v~~~dg~l~AlDa~TG~~~W~~~ 148 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGK-VYVGVLDGRLEAIDAKTGQRAWSVD 148 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTE-EEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCE-EEEEccCCEEEEEECCCCCEeeeec
Confidence 4577778888999999999999988775432210 0 0 00001112444 7888899999999999999887765
Q ss_pred cc--cCcEEEEEEec---CCCcEEEEEe------CCCeEEEEeCCCCCCCCcccc-cccee------------eEe----
Q 004214 325 GH--MGAVGAVAFSK---KLQNFLVSGS------SDHTIKVWSFDGLSDDAEQPM-NLKAK------------AVV---- 376 (768)
Q Consensus 325 ~~--~~~v~~~~~~~---~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~-~~~~~------------~~~---- 376 (768)
.. ......+..+| + . .++.++ .+|.|..||..++...-.... ..... ...
T Consensus 149 ~~~~~~~~~~~~~sP~v~~-g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ 226 (689)
T 1yiq_A 149 TRADHKRSYTITGAPRVVN-G-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDA 226 (689)
T ss_dssp CCSCTTSCCBCCSCCEEET-T-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSST
T ss_pred CcCCCCCCccccCCcEEEC-C-EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCce
Confidence 42 11101111111 3 2 344443 368999999887642111000 00000 000
Q ss_pred ----eccCCCeEEEEEccCCCEEEEEeCCCc-------------------EEEEeCCCCceEEEEecc--C-------CC
Q 004214 377 ----AAHGKDINSLAVAPNDSLVCTGSQDRT-------------------ACVWRLPDLVSVVTFRGH--K-------RG 424 (768)
Q Consensus 377 ----~~~~~~i~~~~~s~~~~~l~~~~~dg~-------------------i~i~d~~~~~~~~~~~~~--~-------~~ 424 (768)
..+......++++|++.++++++.++. |..+|..+++.+..++.. . .+
T Consensus 227 w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~ 306 (689)
T 1yiq_A 227 YVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQH 306 (689)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred eeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCC
Confidence 011122236789998899999988764 999999999999887752 1 12
Q ss_pred eEEEEEccCCC---EEEEeeCCCcEEEEeCCCCceeEEeecCC-Cc----------------------------------
Q 004214 425 IWSVEFSPVDQ---VVITASGDKTIKIWSISDGSCLKTFEGHT-SS---------------------------------- 466 (768)
Q Consensus 425 v~~v~~s~~~~---~l~t~~~d~~i~iwd~~~~~~~~~~~~~~-~~---------------------------------- 466 (768)
+.......+|+ .++.++.+|.++++|..+|+.+....-.. ..
T Consensus 307 ~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~ 386 (689)
T 1yiq_A 307 MILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFW 386 (689)
T ss_dssp EEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTT
T ss_pred cEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcc
Confidence 22223333565 78899999999999999999875433110 00
Q ss_pred ----EEEEEEEeCCCEEEEEeC---------------------------------------------CCcEEEEECCCCe
Q 004214 467 ----VLRASFLTRGAQIVSCGA---------------------------------------------DGLVKLWTVRTGE 497 (768)
Q Consensus 467 ----v~~~~~s~~~~~l~s~~~---------------------------------------------dg~i~iwd~~~~~ 497 (768)
-..++|+|+...+++... +|.|+.||+.+|+
T Consensus 387 Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~ 466 (689)
T 1yiq_A 387 GAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQ 466 (689)
T ss_dssp CSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTE
T ss_pred cccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCC
Confidence 012678888887776532 3789999999999
Q ss_pred EEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCHHHH
Q 004214 498 CIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAER 541 (768)
Q Consensus 498 ~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~~~~ 541 (768)
.+.++..+ .++..-.++..+..++.|+.||.|+.||..+++..
T Consensus 467 ~~W~~~~~-~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~l 509 (689)
T 1yiq_A 467 AAWEVPYV-TIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKL 509 (689)
T ss_dssp EEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred eEeEccCC-CCccCccceECCCEEEEECCCCcEEEEECCCCccc
Confidence 99888744 33444455667889999999999999999988653
No 233
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.22 E-value=9.8e-10 Score=124.09 Aligned_cols=153 Identities=8% Similarity=0.023 Sum_probs=97.0
Q ss_pred eecCCCEEEEEEeC---CCeEEEEeCCCce-EEEeeecccCcEEEEEEecCCCcEEEEEeCC---CeEEEEeCCCCCCCC
Q 004214 292 ALSSGKILIVTGSK---DNSVRLWDSESRC-CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSD---HTIKVWSFDGLSDDA 364 (768)
Q Consensus 292 ~~~~~~~~l~~~~~---dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~ 364 (768)
++++++.++++.+. ++.|+++|+.++. ....+..+....... +++++..+++....+ +.|..+++.....
T Consensus 241 ~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~-- 317 (693)
T 3iuj_A 241 VTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGP-- 317 (693)
T ss_dssp ECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCG--
T ss_pred EcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCc--
Confidence 56666665555443 2588999987652 233444555555554 666767666666554 6788888875421
Q ss_pred ccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCC---cEEEEeCCCCceEEEEe-ccCCCeEEEEEccCCCEEEEe
Q 004214 365 EQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDR---TACVWRLPDLVSVVTFR-GHKRGIWSVEFSPVDQVVITA 440 (768)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~-~~~~~v~~v~~s~~~~~l~t~ 440 (768)
.....+..|...+. .|+++++.|+....++ .|++|++..+. ...+. .....+..+.++|++..++..
T Consensus 318 ------~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~-~~~l~~p~~~~~~~~~~~~d~~~l~~~ 388 (693)
T 3iuj_A 318 ------AHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKR-VREVALPGLGSVSGFNGKHDDPALYFG 388 (693)
T ss_dssp ------GGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCE-EEEECCSSSSEEEECCCCTTCSCEEEE
T ss_pred ------cccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCe-eEEeecCCCceEEeeecCCCCCEEEEE
Confidence 11123344555554 8899888887766544 68899987543 34443 244567778888888766655
Q ss_pred eCC----CcEEEEeCCCCce
Q 004214 441 SGD----KTIKIWSISDGSC 456 (768)
Q Consensus 441 ~~d----~~i~iwd~~~~~~ 456 (768)
..+ ++|..||+.+++.
T Consensus 389 ~ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 389 FENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp EECSSSCCEEEEECTTTCCE
T ss_pred ecCCCCCCEEEEEECCCCeE
Confidence 444 7899999987753
No 234
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.21 E-value=2.5e-09 Score=120.77 Aligned_cols=243 Identities=10% Similarity=0.073 Sum_probs=157.6
Q ss_pred CccceEEEeeeeecCCCEEEEEEeCC----CeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCC------
Q 004214 281 HSEIVLCLDTCALSSGKILIVTGSKD----NSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDH------ 350 (768)
Q Consensus 281 ~~~~v~~l~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg------ 350 (768)
|...+..+. ++++++.++++.+.. ..|++||+.+++.+.... +......++|+ |++. |+.++.+.
T Consensus 127 ~~~~l~~~~--~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~~k~~~~~Ws-Dg~~-l~y~~~~~~~~~~~ 201 (693)
T 3iuj_A 127 GTTALDQLS--FSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-KDVKFSGISWL-GNEG-FFYSSYDKPDGSEL 201 (693)
T ss_dssp SCCEEEEEE--ECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-EEEESCCCEEE-TTTE-EEEEESSCCC----
T ss_pred CcEEEEEEE--ECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-CCceeccEEEe-CCCE-EEEEEecCcccccc
Confidence 444566665 778888755544433 479999999998655311 11112567899 8775 55555553
Q ss_pred -------eEEEEeCCCCCCCCccccccceeeEeec-cCCCeEEEEEccCCCEEEEEeC----CCcEEEEeCCCCc-eEEE
Q 004214 351 -------TIKVWSFDGLSDDAEQPMNLKAKAVVAA-HGKDINSLAVAPNDSLVCTGSQ----DRTACVWRLPDLV-SVVT 417 (768)
Q Consensus 351 -------~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~----dg~i~i~d~~~~~-~~~~ 417 (768)
.|++|++...... ......... |.....++.++|||++|+.... +..|+++|+.++. ....
T Consensus 202 ~~~~~~~~v~~~~lgt~~~~------~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~ 275 (693)
T 3iuj_A 202 SARTDQHKVYFHRLGTAQED------DRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLT 275 (693)
T ss_dssp ---CCCCEEEEEETTSCGGG------CEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEE
T ss_pred cccCCCcEEEEEECCCCccc------ceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEE
Confidence 4888988643210 011111122 3445788999999998866543 2489999998764 4555
Q ss_pred EeccCCCeEEEEEccCCCEEE-EeeCC---CcEEEEeCCCCce--eEEeecCCCcEEEEEEEeCCCEEEEEeC-CC--cE
Q 004214 418 FRGHKRGIWSVEFSPVDQVVI-TASGD---KTIKIWSISDGSC--LKTFEGHTSSVLRASFLTRGAQIVSCGA-DG--LV 488 (768)
Q Consensus 418 ~~~~~~~v~~v~~s~~~~~l~-t~~~d---~~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~s~~~-dg--~i 488 (768)
+..+....... ++++|..|+ .+..+ +.|..+|+.++.. ...+..|...+. .|++++++|+.... +| .|
T Consensus 276 l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l 352 (693)
T 3iuj_A 276 VQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARV 352 (693)
T ss_dssp EECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEE
T ss_pred EeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEE
Confidence 66666666655 666665554 44333 6799999988765 456666777665 89999998877665 44 68
Q ss_pred EEEECCCCeEEEEec-cCCCcEEEEEEcCCCCEEEEEeCC----CcEEEEEcCCH
Q 004214 489 KLWTVRTGECIATYD-KHEDKIWALAVGKKTEMFATGGSD----ALVNLWHDSTA 538 (768)
Q Consensus 489 ~iwd~~~~~~~~~~~-~~~~~v~~l~~s~~~~~l~s~~~d----g~v~vw~~~~~ 538 (768)
++|++..+. ...+. ...+.+..+.+++++..++....+ +.+..|++.++
T Consensus 353 ~~~d~~g~~-~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g 406 (693)
T 3iuj_A 353 EQFDYEGKR-VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSG 406 (693)
T ss_dssp EEECTTSCE-EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTC
T ss_pred EEEECCCCe-eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCC
Confidence 999987554 44443 244567788888888876655544 78888887664
No 235
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.14 E-value=1.4e-07 Score=92.68 Aligned_cols=249 Identities=10% Similarity=0.087 Sum_probs=158.1
Q ss_pred EEEEEeCCCcEEEEECCCceee-----eeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccC
Q 004214 254 YLAVATNIEQVQVYDLSSMSCS-----YVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMG 328 (768)
Q Consensus 254 ~l~~~~~~~~i~i~d~~~~~~~-----~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 328 (768)
+|+.+.. +.|+.+++...... ..+......+.+++ +.+.++.++++...++.|..++...+...........
T Consensus 3 ~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~--~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~ 79 (267)
T 1npe_A 3 HLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLA--FDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLG 79 (267)
T ss_dssp EEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEE--EETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCC
T ss_pred EEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEE--EecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCC
Confidence 4444443 47888887654321 11222223455665 6666777677777788999999987654443333335
Q ss_pred cEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeC---CCcEE
Q 004214 329 AVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ---DRTAC 405 (768)
Q Consensus 329 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---dg~i~ 405 (768)
....+++++++..++++-...+.|.++++.... ..............++++|++..|..+.. .+.|.
T Consensus 80 ~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~----------~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~ 149 (267)
T 1npe_A 80 SPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ----------RRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIE 149 (267)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCS----------CEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEE
T ss_pred CccEEEEEecCCeEEEEECCCCEEEEEEcCCCC----------EEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEE
Confidence 678999999867667777778899999986421 01111112245789999997665555554 36888
Q ss_pred EEeCCCCceEEEE-eccCCCeEEEEEccCCCEEE-EeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEe
Q 004214 406 VWRLPDLVSVVTF-RGHKRGIWSVEFSPVDQVVI-TASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCG 483 (768)
Q Consensus 406 i~d~~~~~~~~~~-~~~~~~v~~v~~s~~~~~l~-t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 483 (768)
.+++.... ...+ .........++++|++..|+ +-...+.|.++|+........+.+ ......++. ++..|+.+.
T Consensus 150 ~~~~dg~~-~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~--d~~~lyva~ 225 (267)
T 1npe_A 150 TSHMDGTN-RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG-LQYPFAVTS--YGKNLYYTD 225 (267)
T ss_dssp EEETTSCC-CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC-CCSEEEEEE--ETTEEEEEE
T ss_pred EEecCCCC-cEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC-CCCceEEEE--eCCEEEEEE
Confidence 88875432 2222 22334678999999876554 445568899999875443333332 233455654 455665555
Q ss_pred -CCCcEEEEECCCCeEEEEeccCC-CcEEEEEEcCCCC
Q 004214 484 -ADGLVKLWTVRTGECIATYDKHE-DKIWALAVGKKTE 519 (768)
Q Consensus 484 -~dg~i~iwd~~~~~~~~~~~~~~-~~v~~l~~s~~~~ 519 (768)
..+.|.++|..+++.+.++.... .....+++.|++.
T Consensus 226 ~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 226 WKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp TTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred CCCCeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence 46799999999999998886433 2467788888764
No 236
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.14 E-value=3e-09 Score=109.00 Aligned_cols=261 Identities=10% Similarity=-0.025 Sum_probs=161.8
Q ss_pred CceeEEEEecCCCCEEEEEeC--CCcEEEEECCCceeeeee-------eCCccceEEEeeeeecCCCEEEEEEeC-----
Q 004214 240 EEILDLKFLGEEEQYLAVATN--IEQVQVYDLSSMSCSYVL-------AGHSEIVLCLDTCALSSGKILIVTGSK----- 305 (768)
Q Consensus 240 ~~i~~~~~~~~~~~~l~~~~~--~~~i~i~d~~~~~~~~~~-------~~~~~~v~~l~~~~~~~~~~~l~~~~~----- 305 (768)
..+..+++.+ +++++++... ++.++||.+.++... .+ ..+...+.++. +.+++ .++++...
T Consensus 17 ~~p~~va~~~-~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~--~d~~g-~L~v~D~g~~~~~ 91 (343)
T 2qe8_A 17 LAPGNITLTP-DGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIK--SDGNG-IVWMLDNGNQSKS 91 (343)
T ss_dssp SCEEEEEECT-TSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEE--ECSSS-EEEEEECHHHHTS
T ss_pred CCcceEEECC-CCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEE--EcCCC-cEEEEcCCCCcCC
Confidence 4567777764 5566666432 342444443344432 22 22445677775 55555 43454433
Q ss_pred CCeEEEEeCCCceEEEeeecc------cCcEEEEEEecCCCcEEEEEe---CCCeEEEEeCCCCCCCCccccccceeeEe
Q 004214 306 DNSVRLWDSESRCCVGVGTGH------MGAVGAVAFSKKLQNFLVSGS---SDHTIKVWSFDGLSDDAEQPMNLKAKAVV 376 (768)
Q Consensus 306 dg~i~iwd~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 376 (768)
++.|.+||+.+++.+..+..+ ...+..+++++++...+++.. .++.|.+||+..+. .....
T Consensus 92 ~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~----------~~r~~ 161 (343)
T 2qe8_A 92 VPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGL----------AARVL 161 (343)
T ss_dssp CCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCC----------EEEEC
T ss_pred CCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCC----------EEEEe
Confidence 579999999999877665432 234688999987565556665 68899999987432 22222
Q ss_pred eccCCC-eEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCC-cEEEEeCC--
Q 004214 377 AAHGKD-INSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDK-TIKIWSIS-- 452 (768)
Q Consensus 377 ~~~~~~-i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~-~i~iwd~~-- 452 (768)
..|... .....+.++|..+.+.+.+|.+..|. ..+..++|+|+++.|+.+..++ .+..++..
T Consensus 162 ~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~ 227 (343)
T 2qe8_A 162 QGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH--------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADL 227 (343)
T ss_dssp TTCTTTSCCSCCCEETTEECBEECTTSCEECCC--------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHH
T ss_pred cCCCcccccccceeECCEEEEeccCCCceecee--------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHh
Confidence 222111 00134455777777777888776553 2367899999999888887665 44444421
Q ss_pred -CCc-----eeE--EeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEecc-CCCcEEEEEEcCCCCEEEE
Q 004214 453 -DGS-----CLK--TFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDK-HEDKIWALAVGKKTEMFAT 523 (768)
Q Consensus 453 -~~~-----~~~--~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~s 523 (768)
.+. ... ...++......++++++|+.+++...++.|.+||..+++....... +...+.+++|.+++.++++
T Consensus 228 ~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~ 307 (343)
T 2qe8_A 228 SNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFD 307 (343)
T ss_dssp TCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEE
T ss_pred cCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEE
Confidence 111 000 1123444556789999999999888899999999866764333322 2456889999999998888
Q ss_pred EeCCCc
Q 004214 524 GGSDAL 529 (768)
Q Consensus 524 ~~~dg~ 529 (768)
.+..+.
T Consensus 308 ~~~~~~ 313 (343)
T 2qe8_A 308 CNQLHH 313 (343)
T ss_dssp ECCGGG
T ss_pred eCcccc
Confidence 775443
No 237
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.13 E-value=2.1e-08 Score=100.77 Aligned_cols=226 Identities=11% Similarity=0.032 Sum_probs=146.9
Q ss_pred ceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEE
Q 004214 241 EILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCV 320 (768)
Q Consensus 241 ~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 320 (768)
......|.+.+..++++...++.|..|+. ++. ...+..+...+.++. +.+++. ++++...++.|.+|+.. ++..
T Consensus 46 ~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~--~d~dG~-l~v~~~~~~~v~~~~~~-g~~~ 119 (305)
T 3dr2_A 46 WSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNA--VDAQQR-LVHCEHGRRAITRSDAD-GQAH 119 (305)
T ss_dssp SEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEE--ECTTSC-EEEEETTTTEEEEECTT-SCEE
T ss_pred CccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceee--ECCCCC-EEEEECCCCEEEEECCC-CCEE
Confidence 45567787655557788888899999998 444 334444556677775 556655 35555556889999986 5433
Q ss_pred Eeeecc----cCcEEEEEEecCCCcEEEE----EeC-------------CCeEEEEeCCCCCCCCccccccceeeEeecc
Q 004214 321 GVGTGH----MGAVGAVAFSKKLQNFLVS----GSS-------------DHTIKVWSFDGLSDDAEQPMNLKAKAVVAAH 379 (768)
Q Consensus 321 ~~~~~~----~~~v~~~~~~~~~~~~l~s----~~~-------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 379 (768)
...... ...+..+++.|+|. ++++ |.. .+.|..||...+. .... . .
T Consensus 120 ~~~~~~~~~~~~~~~~i~~d~dG~-l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~----------~~~~-~-~ 186 (305)
T 3dr2_A 120 LLVGRYAGKRLNSPNDLIVARDGA-IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSP----------LQRM-A-D 186 (305)
T ss_dssp EEECEETTEECSCCCCEEECTTSC-EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCC----------CEEE-E-E
T ss_pred EEEeccCCCccCCCCCEEECCCCC-EEEeCcCCCccccccccccccccCCCeEEEEcCCCCc----------EEEE-e-c
Confidence 222111 13456799999976 5554 321 2456666654321 1111 1 3
Q ss_pred CCCeEEEEEccCCCEEEEEeCC------CcEEEEeCCCCceE--EEE-eccCCCeEEEEEccCCCEEEEeeCCCcEEEEe
Q 004214 380 GKDINSLAVAPNDSLVCTGSQD------RTACVWRLPDLVSV--VTF-RGHKRGIWSVEFSPVDQVVITASGDKTIKIWS 450 (768)
Q Consensus 380 ~~~i~~~~~s~~~~~l~~~~~d------g~i~i~d~~~~~~~--~~~-~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd 450 (768)
....+.++|+|+++.|+++... +.|.+|++...... ..+ .........++++++|++.++ ..+ .|.+|+
T Consensus 187 ~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~-~~~-gv~~~~ 264 (305)
T 3dr2_A 187 LDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSS-SGT-GVCVFD 264 (305)
T ss_dssp ESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEEC-CSS-EEEEEC
T ss_pred CCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEe-cCC-cEEEEC
Confidence 3456889999999988877665 68999998755411 111 112334567899999995544 454 499999
Q ss_pred CCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEE
Q 004214 451 ISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVK 489 (768)
Q Consensus 451 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~ 489 (768)
. +++.+..+..+. .+..++|+++++.|+.++.++..+
T Consensus 265 ~-~g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~~ 301 (305)
T 3dr2_A 265 S-DGQLLGHIPTPG-TASNCTFDQAQQRLFITGGPCLWM 301 (305)
T ss_dssp T-TSCEEEEEECSS-CCCEEEECTTSCEEEEEETTEEEE
T ss_pred C-CCCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeEEE
Confidence 8 688888887555 588899999999888888765433
No 238
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.12 E-value=6.7e-08 Score=98.40 Aligned_cols=220 Identities=10% Similarity=0.069 Sum_probs=149.9
Q ss_pred cCCCEEEEEEeCCCeEEEEeCCCc----eEEEeee-------cccCcEEEEEEecCCCcEEEEEeCC------CeEEEEe
Q 004214 294 SSGKILIVTGSKDNSVRLWDSESR----CCVGVGT-------GHMGAVGAVAFSKKLQNFLVSGSSD------HTIKVWS 356 (768)
Q Consensus 294 ~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~-------~~~~~v~~~~~~~~~~~~l~s~~~d------g~i~iwd 356 (768)
.+.+.+++.|..++.|+++|+.+. +...++. .....-..+.+.|+| +++++..+ |.|.++|
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v~vlD 170 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNEEGEGPGGILMLD 170 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEETTSCSCCEEEEEC
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCcCCCCCCeEEEEE
Confidence 567777888889999999999755 5666552 111244567888997 66666655 7899999
Q ss_pred CCCCCCCCccccccceeeEeec--cC-CCeEEEEEccCCCEEEEEe-------------------CCCcEEEEeCCCCce
Q 004214 357 FDGLSDDAEQPMNLKAKAVVAA--HG-KDINSLAVAPNDSLVCTGS-------------------QDRTACVWRLPDLVS 414 (768)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~--~~-~~i~~~~~s~~~~~l~~~~-------------------~dg~i~i~d~~~~~~ 414 (768)
..+.. ....... .. .--..+.|+|+++.+++.. .+.+|.+||+.+++.
T Consensus 171 ~~T~~----------v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~ 240 (462)
T 2ece_A 171 HYSFE----------PLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKR 240 (462)
T ss_dssp TTTCC----------EEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEE
T ss_pred CCCCe----------EEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcE
Confidence 87542 2222211 11 1233578899999888874 368999999999888
Q ss_pred EEEEecc--CCCeEEEEE--ccCCCEEEEee------CCCcEEEEeCCCCce--eEEe--ecC----------------C
Q 004214 415 VVTFRGH--KRGIWSVEF--SPVDQVVITAS------GDKTIKIWSISDGSC--LKTF--EGH----------------T 464 (768)
Q Consensus 415 ~~~~~~~--~~~v~~v~~--s~~~~~l~t~~------~d~~i~iwd~~~~~~--~~~~--~~~----------------~ 464 (768)
+.++..- ......+.| +|+++++++++ .+++|.+|....+.. .+.+ ... .
T Consensus 241 ~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~ 320 (462)
T 2ece_A 241 IHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVP 320 (462)
T ss_dssp EEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEEC
T ss_pred eeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCC
Confidence 8877652 123445655 99999888877 466888776654421 1111 110 2
Q ss_pred CcEEEEEEEeCCCEEEEEeC-CCcEEEEECC---CCeEEEEeccCC--------------CcEEEEEEcCCCCEEEEEe
Q 004214 465 SSVLRASFLTRGAQIVSCGA-DGLVKLWTVR---TGECIATYDKHE--------------DKIWALAVGKKTEMFATGG 525 (768)
Q Consensus 465 ~~v~~~~~s~~~~~l~s~~~-dg~i~iwd~~---~~~~~~~~~~~~--------------~~v~~l~~s~~~~~l~s~~ 525 (768)
.....+.+++||++|.++.. .+.|.+||+. +.+.+..+.... +....++++|||++|+++.
T Consensus 321 ~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 321 PLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 34678999999999987776 6799999985 335565554220 1246799999999999888
No 239
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.10 E-value=3e-11 Score=124.97 Aligned_cols=205 Identities=10% Similarity=0.049 Sum_probs=115.3
Q ss_pred CCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceee
Q 004214 295 SGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKA 374 (768)
Q Consensus 295 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 374 (768)
.++. +++++.||.|+.||..+|+.+..+.. +.+.+..+..++. ++++++.||.|..||..++............
T Consensus 8 ~~~~-v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~-~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~-- 81 (369)
T 2hz6_A 8 PETL-LFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEP-AFLPDPNDGSLYTLGSKNNEGLTKLPFTIPE-- 81 (369)
T ss_dssp CTTE-EEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----C-CEEECTTTCCEEEC-----CCSEECSCCHHH--
T ss_pred eCCE-EEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCC-EEEEeCCCCEEEEEECCCCceeeeeeccCcc--
Confidence 3454 88899999999999999999888776 4444444555544 5677789999999998755321111000000
Q ss_pred EeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCC
Q 004214 375 VVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG 454 (768)
Q Consensus 375 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~ 454 (768)
.....++ +. .+..+++++.|+.++.||..+++.+..+..+. ...++|++..+++++.|+.|+.||..+|
T Consensus 82 --~~~~sp~----~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG 150 (369)
T 2hz6_A 82 --LVQASPC----RS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTR 150 (369)
T ss_dssp --HHTTCSC----C------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSS
T ss_pred --ccccCce----Ee-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCC
Confidence 0001111 11 34567788889999999999999888776543 2456678889999999999999999999
Q ss_pred ceeEEeecCCCcEEEEEEEeCC---CEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEE-EEEcCCCC
Q 004214 455 SCLKTFEGHTSSVLRASFLTRG---AQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWA-LAVGKKTE 519 (768)
Q Consensus 455 ~~~~~~~~~~~~v~~~~~s~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~-l~~s~~~~ 519 (768)
+.+..+..+. .....+.++. ..+++++.||.|+.||..+|+.+..+. ...++.. ..++++|.
T Consensus 151 ~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~-~~~pv~~~~~~~~dg~ 216 (369)
T 2hz6_A 151 ELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN-YASPVVAFYVWQREGL 216 (369)
T ss_dssp SCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE-CSSCEEEEEECTTSSC
T ss_pred CEEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec-CCCceEEEEEecCCce
Confidence 9887765321 1122333332 567788899999999999999988876 4445543 34444553
No 240
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.10 E-value=9.1e-13 Score=136.37 Aligned_cols=257 Identities=14% Similarity=0.043 Sum_probs=146.7
Q ss_pred CCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCc-
Q 004214 251 EEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGA- 329 (768)
Q Consensus 251 ~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~- 329 (768)
++..+++++.++.|+.||..+++....+.. ..+.+.. ...++. ++++++.||.|+.||..+++.+.....+...
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p--~~~~g~-~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~ 82 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVP--THVEEP-AFLPDPNDGSLYTLGSKNNEGLTKLPFTIPEL 82 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-------C-CEEECTTTCCEEEC-----CCSEECSCCHHHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecc--eEcCCC-EEEEeCCCCEEEEEECCCCceeeeeeccCccc
Confidence 567899999999999999999999888776 3343332 333443 3777789999999999888776555433211
Q ss_pred EE-EEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEe
Q 004214 330 VG-AVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWR 408 (768)
Q Consensus 330 v~-~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d 408 (768)
+. +..+..+ . .+++++.++.+..||..++... .....+. ...++|++..+++++.|+.|+.||
T Consensus 83 ~~~sp~~~~~-~-~v~~g~~dg~v~a~D~~tG~~~----------w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d 146 (369)
T 2hz6_A 83 VQASPCRSSD-G-ILYMGKKQDIWYVIDLLTGEKQ----------QTLSSAF----ADSLSPSTSLLYLGRTEYTITMYD 146 (369)
T ss_dssp HTTCSCC-------CCCCEEEEEEEEECCC------------------------------------EEEEEEEEEEECCC
T ss_pred cccCceEecC-C-EEEEEeCCCEEEEEECCCCcEE----------EEecCCC----cccccccCCEEEEEecCCEEEEEE
Confidence 10 0011122 2 5778888999999999865321 1111111 234567888999999999999999
Q ss_pred CCCCceEEEEeccCCCeEEEEEccCC---CEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEE-EEEEeCCCEEEE--E
Q 004214 409 LPDLVSVVTFRGHKRGIWSVEFSPVD---QVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLR-ASFLTRGAQIVS--C 482 (768)
Q Consensus 409 ~~~~~~~~~~~~~~~~v~~v~~s~~~---~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~s--~ 482 (768)
..+++.+..+..+. ....+++++. ..+++++.||.|+.||..+|+.+.++. ...++.. ..++++|...+. .
T Consensus 147 ~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~-~~~pv~~~~~~~~dg~~~v~~~~ 223 (369)
T 2hz6_A 147 TKTRELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN-YASPVVAFYVWQREGLRKVMHIN 223 (369)
T ss_dssp SSSSSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE-CSSCEEEEEECTTSSCEEECCEE
T ss_pred CCCCCEEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec-CCCceEEEEEecCCceEecccee
Confidence 99998776654321 1223334332 557778899999999999999988877 3444433 333445542110 0
Q ss_pred eCCCcEEEEECCCCe----EEEEeccCCCcEEEEEEcC--CCCEEEEEeCCCcEEEEEcC
Q 004214 483 GADGLVKLWTVRTGE----CIATYDKHEDKIWALAVGK--KTEMFATGGSDALVNLWHDS 536 (768)
Q Consensus 483 ~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~l~~s~--~~~~l~s~~~dg~v~vw~~~ 536 (768)
..++.++.+|..+|+ .+..+.. .+.+. +| .+..|+.++.||.|+.++..
T Consensus 224 ~~~~~l~~ld~~tG~~~~~~~W~~~~-~~~~~----sp~~~~g~lyv~~~~G~l~al~~~ 278 (369)
T 2hz6_A 224 VAVETLRYLTFMSGEVGRITKWKYPF-PKETE----AKSKLTPTLYVGKYSTSLYASPSM 278 (369)
T ss_dssp EEHHHHHHHHHHHHHHHHHHTSCCCC-CCHHH----HHHHSEEEECBEECSSCEECCEEE
T ss_pred ecccceeeeehhcCCcccceeeeecc-Ccccc----ccccccceEEEecccCCEEecCcc
Confidence 113456667776666 4444431 11221 22 34578888889999888765
No 241
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.07 E-value=1.4e-08 Score=107.31 Aligned_cols=230 Identities=11% Similarity=0.083 Sum_probs=155.2
Q ss_pred CCCEEEEEEeCCCeEEEEeCCCceEEEeeecc-cCcEEEEEE-e-cCCCcEEEEEe------------------CCCeEE
Q 004214 295 SGKILIVTGSKDNSVRLWDSESRCCVGVGTGH-MGAVGAVAF-S-KKLQNFLVSGS------------------SDHTIK 353 (768)
Q Consensus 295 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~-~-~~~~~~l~s~~------------------~dg~i~ 353 (768)
+++.++++...++.|.+.|+.+.++...+.-. ......+++ + |+++ ++++++ .++.+.
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~-~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSN-YVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCS-EEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCc-EEEEecccccccCCCCcccccccccCceEE
Confidence 56666666666778999999999988755432 345778887 4 8877 555553 345788
Q ss_pred EEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCC-------------------------------
Q 004214 354 VWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDR------------------------------- 402 (768)
Q Consensus 354 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg------------------------------- 402 (768)
+.|.... +.......-. ....++++|+|+++++.+.+.
T Consensus 179 vID~~t~----------~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~ 247 (595)
T 1fwx_A 179 AVDADKW----------EVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAA 247 (595)
T ss_dssp EEETTTT----------EEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHH
T ss_pred EEECCCC----------eEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccC
Confidence 8888732 2222222212 346688999999999988653
Q ss_pred -------cEEEEeCCC--Cce-EEEEeccCCCeEEEEEccCCCEEEEee-CCCcEEEEeCCCCc------------eeEE
Q 004214 403 -------TACVWRLPD--LVS-VVTFRGHKRGIWSVEFSPVDQVVITAS-GDKTIKIWSISDGS------------CLKT 459 (768)
Q Consensus 403 -------~i~i~d~~~--~~~-~~~~~~~~~~v~~v~~s~~~~~l~t~~-~d~~i~iwd~~~~~------------~~~~ 459 (768)
.|.+.|..+ ++. +..+.. .....++.++|||+++++++ .+.+|.++|+.+.+ ....
T Consensus 248 Gk~~~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~ 326 (595)
T 1fwx_A 248 GDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAE 326 (595)
T ss_dssp TCSEEETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEEC
T ss_pred CCeeEECcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEE
Confidence 466667666 434 444432 33567899999999777665 67899999998653 2333
Q ss_pred eecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCC----------CeEEEEeccCCCcE-E----EEEEcCCCCEEEEE
Q 004214 460 FEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRT----------GECIATYDKHEDKI-W----ALAVGKKTEMFATG 524 (768)
Q Consensus 460 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~----------~~~~~~~~~~~~~v-~----~l~~s~~~~~l~s~ 524 (768)
.. -......++|+++|...++...|++|.+||+.+ .+.+.++..|..+- . ++.++|||++|+++
T Consensus 327 v~-vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~ 405 (595)
T 1fwx_A 327 PE-LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCL 405 (595)
T ss_dssp CB-CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEE
T ss_pred cC-CCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEc
Confidence 33 334577899999993334555699999999987 67788887775542 1 22458999999987
Q ss_pred eC---CCcE----------EEEEcCCH
Q 004214 525 GS---DALV----------NLWHDSTA 538 (768)
Q Consensus 525 ~~---dg~v----------~vw~~~~~ 538 (768)
.. |..+ .++++..+
T Consensus 406 Nk~skdr~~~~gp~~~~~~ql~dis~~ 432 (595)
T 1fwx_A 406 SKFSKDRFLNVGPLKPENDQLIDISGD 432 (595)
T ss_dssp ESCCTTSSCCCCSSCCEEEEEEECSSS
T ss_pred CCCCccccccCCCCCCCcceEEEcCCC
Confidence 63 4432 77887543
No 242
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=99.03 E-value=6.6e-05 Score=82.40 Aligned_cols=477 Identities=12% Similarity=0.064 Sum_probs=250.3
Q ss_pred cCCCcEEEEECCCCE-EEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCee-EEEecCccceeEEEEEcC
Q 004214 7 GADRKVLVWDVDGGF-CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKC-VATLDKHFSRVTSMAITS 84 (768)
Q Consensus 7 ~~dg~i~vwd~~~~~-~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~-~~~l~~h~~~V~~l~fs~ 84 (768)
.....|++.|+.... ....+...-..+..|+|++.+.. +.++-...+.|..+++..... ...+...-.....|++.+
T Consensus 15 ~~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~-ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~ 93 (619)
T 3s94_A 15 ANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGL-IYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDW 93 (619)
T ss_dssp ECSSBEEEECCC---------CBCCSCEEEEEEETTTTE-EEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEET
T ss_pred eccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCE-EEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEe
Confidence 357889999997653 22233334556889999997665 334445567899999865532 233333335688999999
Q ss_pred CCCEEEEE-eCCCeEEEEECCCCeeeeee-ecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEe-eCCcE
Q 004214 85 DGSTLISA-GRDKVVNLWDLRDYSCKLTV-PTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITV-GERGI 161 (768)
Q Consensus 85 d~~~L~s~-~~dg~i~vWd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~ 161 (768)
.+..|+.+ ...+.|.+.++........+ .....+..+++.|.+.. .+++- +..+.
T Consensus 94 ~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~----------------------ly~tD~g~~~~ 151 (619)
T 3s94_A 94 LGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGF----------------------MYWTDWGEVPK 151 (619)
T ss_dssp TTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTE----------------------EEEEECSSSCE
T ss_pred cCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCe----------------------EEEeccCCCCE
Confidence 66665554 45689999998765432222 22233555666554321 22222 33455
Q ss_pred EEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEe-cCeEEEEeeccCcccceeeEEEeeecccCC
Q 004214 162 VRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTA-DQQLLLYTTVEVPEKKMELILSKRLVGYNE 240 (768)
Q Consensus 162 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (768)
|...++++........ ........+++.+.+..++.+.. .+.|..++........ ... +...
T Consensus 152 I~r~~~dG~~~~~l~~----------~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~----~~~---~~~~ 214 (619)
T 3s94_A 152 IERAGMDGSSRFIIIN----------SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQA----VVK---GSLP 214 (619)
T ss_dssp EEEEETTSCSCEEEEC----------SSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------------
T ss_pred EEEEECCCCceEEEEe----------CCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEE----EEe---CCCC
Confidence 6655655442111100 11234567788887777766653 4567666665422111 001 1111
Q ss_pred ceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeC-----------Cc--c------------c--eEEEe----
Q 004214 241 EILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAG-----------HS--E------------I--VLCLD---- 289 (768)
Q Consensus 241 ~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~-----------~~--~------------~--v~~l~---- 289 (768)
....+++. .+..+.+-...+.|...|..+++....+.. |. . . -.|+.
T Consensus 215 ~P~gi~~~--~~~ly~td~~~~~V~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~ 292 (619)
T 3s94_A 215 HPFALTLF--EDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVK 292 (619)
T ss_dssp -CCCEEES--SSEEEEECTTTCSEEEEESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSST
T ss_pred CceEEEEe--CCEEEEecCCCCEEEEEECCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCC
Confidence 22345553 223444444567788888766543322111 00 0 0 01110
Q ss_pred ---eeeecC--------------CCEEEEEEeCCCeEEEEeCCCceE--EEeeecccCcEEEEEEecCCCcEEEEEeCCC
Q 004214 290 ---TCALSS--------------GKILIVTGSKDNSVRLWDSESRCC--VGVGTGHMGAVGAVAFSKKLQNFLVSGSSDH 350 (768)
Q Consensus 290 ---~~~~~~--------------~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg 350 (768)
.|..+. ...+|+.+. .+.|+..++..... +......-..+.+++|.+.+..++++-...+
T Consensus 293 ~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~~-~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~ 371 (619)
T 3s94_A 293 PFYQCACPTGVKLLENGKTCKDGATELLLLAR-RTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVR 371 (619)
T ss_dssp TSEEEECCTTCCBCTTSSCBCSSCSEEEEEEE-SSCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTT
T ss_pred CCceEeCCchheecccCcccCCCCceEEEEEc-ccceEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCC
Confidence 000011 122233332 34666666654421 1111112345778999987666666666788
Q ss_pred eEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccC-CCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEE
Q 004214 351 TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN-DSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVE 429 (768)
Q Consensus 351 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~ 429 (768)
.|..+++.... ........-..+..+++++. +++.++-+..+.|.+.++........+...-.....++
T Consensus 372 ~I~r~~~~g~~----------~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~~ia 441 (619)
T 3s94_A 372 AIRRSFIDGSG----------SQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIV 441 (619)
T ss_dssp EEEEEETTSCS----------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCCSEEEEE
T ss_pred eEEEEEcCCCc----------cEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEEEEECCCCCeeeEE
Confidence 89989886431 11112222245678999974 55555555678899999875543333333445678999
Q ss_pred EccCCCEEEEee-C-CCcEEEEeCCCCceeEEe-ecCCCcEEEEEEEeCCCEEEEEeC-CCcEEEEECCCCeEEEEeccC
Q 004214 430 FSPVDQVVITAS-G-DKTIKIWSISDGSCLKTF-EGHTSSVLRASFLTRGAQIVSCGA-DGLVKLWTVRTGECIATYDKH 505 (768)
Q Consensus 430 ~s~~~~~l~t~~-~-d~~i~iwd~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~ 505 (768)
+.|....|+.+. . .+.|...++. |.....+ ...-...+.+++.+++..|+.+.. .+.|..+++........+...
T Consensus 442 vdp~~G~ly~tD~g~~~~I~r~~~d-G~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~ 520 (619)
T 3s94_A 442 LDPMVGYMYWTDWGEIPKIERAALD-GSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDK 520 (619)
T ss_dssp EETTTTEEEEEECSSSCEEEEEETT-SCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEECC
T ss_pred EEcCCCcEEEecCCCCCEEEEEccC-CCccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCceEEEeccC
Confidence 999744444433 2 3667777764 4433333 334567789999998878877765 467888887543322212111
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCH
Q 004214 506 EDKIWALAVGKKTEMFATGGSDALVNLWHDSTA 538 (768)
Q Consensus 506 ~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~ 538 (768)
-....+|++..+ ...++-...+.|..-+..++
T Consensus 521 l~~P~glav~~~-~ly~tD~~~~~I~~~~k~~g 552 (619)
T 3s94_A 521 IPHIFGFTLLGD-YVYWTDWQRRSIERVHKRSA 552 (619)
T ss_dssp CCSSCCEEEETT-EEEEECTTSSCEEEEESSSC
T ss_pred CCCcEEEEEECC-EEEEeecCCCeEEEEEcCCC
Confidence 122234555433 33444444555666665554
No 243
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.01 E-value=1.3e-07 Score=105.65 Aligned_cols=257 Identities=11% Similarity=0.075 Sum_probs=163.4
Q ss_pred CEEEEEeCCCcEEEEECCCceeeeeeeCCcc----ceEEEeeeeecCCCEEEEEEeC------CCeEEEEeCCCceEEEe
Q 004214 253 QYLAVATNIEQVQVYDLSSMSCSYVLAGHSE----IVLCLDTCALSSGKILIVTGSK------DNSVRLWDSESRCCVGV 322 (768)
Q Consensus 253 ~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~----~v~~l~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~ 322 (768)
..+++++.++.|..+|..+++.+........ .+.+. ..-.++. ++++.. +|.|..+|..+++.+..
T Consensus 118 ~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~---P~v~~~~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W~ 193 (668)
T 1kv9_A 118 DKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGA---PRVVKGK-VIIGNGGAEYGVRGFVSAYDADTGKLAWR 193 (668)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSC---CEEETTE-EEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred CEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCC---CEEECCE-EEEeCCCCCcCCCCEEEEEECCCCcEEEE
Confidence 4677788889999999999998877654211 11110 0011344 444433 58999999999998877
Q ss_pred eeccc---C----------------------------cEEEEEEecCCCcEEEEEeCCC-------------------eE
Q 004214 323 GTGHM---G----------------------------AVGAVAFSKKLQNFLVSGSSDH-------------------TI 352 (768)
Q Consensus 323 ~~~~~---~----------------------------~v~~~~~~~~~~~~l~s~~~dg-------------------~i 352 (768)
+.... . ....+++.|... +++.++.++ .|
T Consensus 194 ~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~-~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v 272 (668)
T 1kv9_A 194 FYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELD-LLYVGTGNGSPWNREVRSPGGGDNLYLSSI 272 (668)
T ss_dssp EESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTT-EEEEECCCEESSCHHHHSTTCCCCTTTTEE
T ss_pred ecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCC-EEEEeCCCCCccccCCCCCCCCCceeeeeE
Confidence 65210 0 112367777755 677777665 38
Q ss_pred EEEeCCCCCCCCccccccceeeEeec--cC-------CCeEEEEEccCCC---EEEEEeCCCcEEEEeCCCCceEEEEec
Q 004214 353 KVWSFDGLSDDAEQPMNLKAKAVVAA--HG-------KDINSLAVAPNDS---LVCTGSQDRTACVWRLPDLVSVVTFRG 420 (768)
Q Consensus 353 ~iwd~~~~~~~~~~~~~~~~~~~~~~--~~-------~~i~~~~~s~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~ 420 (768)
..+|..++. ....... |. .+.....+..+|+ .+++++.+|.++++|..+++.+.....
T Consensus 273 ~AlD~~tG~----------~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~ 342 (668)
T 1kv9_A 273 LAIRPDTGK----------LAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKF 342 (668)
T ss_dssp EEECTTTCC----------EEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEES
T ss_pred EEEcCCCCc----------eeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccc
Confidence 888887553 2222211 11 2223333334665 688999999999999999998754432
Q ss_pred cC------------CCe------------------------EEEEEccCCCEEEEe------------------------
Q 004214 421 HK------------RGI------------------------WSVEFSPVDQVVITA------------------------ 440 (768)
Q Consensus 421 ~~------------~~v------------------------~~v~~s~~~~~l~t~------------------------ 440 (768)
.. .++ ..++++|+..+++..
T Consensus 343 ~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g 422 (668)
T 1kv9_A 343 GKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTA 422 (668)
T ss_dssp SCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCS
T ss_pred cccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccC
Confidence 11 000 126788877666541
Q ss_pred ------------eCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCc
Q 004214 441 ------------SGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDK 508 (768)
Q Consensus 441 ------------~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 508 (768)
..+|.|.-||+.+|+.+.+...+ .+.....+...+.+++.++.||.|+.||.++|+.+..+....+.
T Consensus 423 ~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~ 501 (668)
T 1kv9_A 423 AGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGI 501 (668)
T ss_dssp SCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC
T ss_pred ccccccCCCCCCCccceEEEEeCCCCcEEEEccCC-CCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCc
Confidence 13488999999999998877643 33334456677889999999999999999999999988754321
Q ss_pred E-EEEEEcCCCC-EEEEEe
Q 004214 509 I-WALAVGKKTE-MFATGG 525 (768)
Q Consensus 509 v-~~l~~s~~~~-~l~s~~ 525 (768)
. .-+.+..+|+ +++.++
T Consensus 502 ~~~p~~~~~~G~~yva~~~ 520 (668)
T 1kv9_A 502 VAAPMTFELAGRQYVAIMA 520 (668)
T ss_dssp CSCCEEEEETTEEEEEEEE
T ss_pred ccCceEEEECCEEEEEEEe
Confidence 1 1233344666 444444
No 244
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.97 E-value=3.2e-06 Score=82.80 Aligned_cols=223 Identities=10% Similarity=0.020 Sum_probs=143.9
Q ss_pred ceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEE
Q 004214 241 EILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCV 320 (768)
Q Consensus 241 ~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 320 (768)
.+..+++.+.++.++++-...+.|..++.........+........+++ +.+.++.++++....+.|.+++.......
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia--~d~~~~~lyv~d~~~~~I~~~~~~g~~~~ 114 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIA--LDHLGRTIFWTDSQLDRIEVAKMDGTQRR 114 (267)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEE--EETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEE--EEecCCeEEEEECCCCEEEEEEcCCCCEE
Confidence 4578888876666666666788999999987654433433334556665 66667776677777889999998754332
Q ss_pred EeeecccCcEEEEEEecCCCcEEEEEeC--CCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEE
Q 004214 321 GVGTGHMGAVGAVAFSKKLQNFLVSGSS--DHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTG 398 (768)
Q Consensus 321 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 398 (768)
............++++|++..++++... .+.|..++++.... .............++++|++..|..+
T Consensus 115 ~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~----------~~~~~~~~~~P~gia~d~~~~~lyv~ 184 (267)
T 1npe_A 115 VLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR----------RILAQDNLGLPNGLTFDAFSSQLCWV 184 (267)
T ss_dssp EEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC----------EEEECTTCSCEEEEEEETTTTEEEEE
T ss_pred EEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc----------EEEEECCCCCCcEEEEcCCCCEEEEE
Confidence 2222222456899999976655555443 46888888764210 11111223457899999987666554
Q ss_pred e-CCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCC-CcEEEEEEEeCC
Q 004214 399 S-QDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHT-SSVLRASFLTRG 476 (768)
Q Consensus 399 ~-~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s~~~ 476 (768)
. ..+.|.++++........+.+ ......++.. .+.++++....+.|.++|..+++.+.++.... .....+++.|++
T Consensus 185 d~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~ 262 (267)
T 1npe_A 185 DAGTHRAECLNPAQPGRRKVLEG-LQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQ 262 (267)
T ss_dssp ETTTTEEEEEETTEEEEEEEEEC-CCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSC
T ss_pred ECCCCEEEEEecCCCceEEEecC-CCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecCcc
Confidence 4 567899999876544333332 2334566654 34455555566899999999999988886433 246678888876
Q ss_pred C
Q 004214 477 A 477 (768)
Q Consensus 477 ~ 477 (768)
.
T Consensus 263 ~ 263 (267)
T 1npe_A 263 C 263 (267)
T ss_dssp C
T ss_pred C
Confidence 4
No 245
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.94 E-value=8.9e-08 Score=106.87 Aligned_cols=280 Identities=10% Similarity=0.041 Sum_probs=178.6
Q ss_pred CCEEEEEeCCCcEEEEECCCceeeeeeeCCccce-----------EEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEE
Q 004214 252 EQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIV-----------LCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCV 320 (768)
Q Consensus 252 ~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v-----------~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 320 (768)
+..+++++.++.|.-+|..+++.+..+....... ..+. . .++. ++.++.|+.|..+|..+++.+
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~-v~v~~~dg~l~alD~~tG~~~ 140 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVA--L--WGDK-VYVGTLDGRLIALDAKTGKAI 140 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCE--E--EBTE-EEEECTTSEEEEEETTTCCEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceE--E--ECCE-EEEEcCCCEEEEEECCCCCEe
Confidence 4567777888999999999999887765432210 0111 1 2344 778889999999999999988
Q ss_pred Eeeeccc----CcEEE-EEEecCCCcEEEEEeC------CCeEEEEeCCCCCCCCccccc-ccee---------------
Q 004214 321 GVGTGHM----GAVGA-VAFSKKLQNFLVSGSS------DHTIKVWSFDGLSDDAEQPMN-LKAK--------------- 373 (768)
Q Consensus 321 ~~~~~~~----~~v~~-~~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~-~~~~--------------- 373 (768)
..+.... ..+.+ ..+. + . .+++++. +|.|..+|..++...-..... ....
T Consensus 141 W~~~~~~~~~~~~~~~~P~v~-~-~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~ 217 (668)
T 1kv9_A 141 WSQQTTDPAKPYSITGAPRVV-K-G-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTW 217 (668)
T ss_dssp EEEECSCTTSSCBCCSCCEEE-T-T-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTC
T ss_pred eeeccCCCCCcceecCCCEEE-C-C-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccC
Confidence 7765421 11111 1111 2 2 3555443 588999998766421110000 0000
Q ss_pred -----eEeeccCCCeEEEEEccCCCEEEEEeCCCc-------------------EEEEeCCCCceEEEEec--cC-----
Q 004214 374 -----AVVAAHGKDINSLAVAPNDSLVCTGSQDRT-------------------ACVWRLPDLVSVVTFRG--HK----- 422 (768)
Q Consensus 374 -----~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~-------------------i~i~d~~~~~~~~~~~~--~~----- 422 (768)
.....+......++++|.+.+++.++.++. |..+|..+++.+..++. |.
T Consensus 218 ~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~ 297 (668)
T 1kv9_A 218 QGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFT 297 (668)
T ss_dssp CSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCC
T ss_pred CccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCcccccc
Confidence 000011222345789998889988887763 99999999999888774 21
Q ss_pred --CCeEEEEEccCCC---EEEEeeCCCcEEEEeCCCCceeEEeecCCC------------cE------------------
Q 004214 423 --RGIWSVEFSPVDQ---VVITASGDKTIKIWSISDGSCLKTFEGHTS------------SV------------------ 467 (768)
Q Consensus 423 --~~v~~v~~s~~~~---~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~------------~v------------------ 467 (768)
.+.....+..+|+ .++.++.+|.++++|..+|+.+........ ++
T Consensus 298 ~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~ 377 (668)
T 1kv9_A 298 ATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSP 377 (668)
T ss_dssp CCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCT
T ss_pred CCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCC
Confidence 2333333444665 788999999999999999998854432110 00
Q ss_pred ------EEEEEEeCCCEEEEE------------------------------------eCCCcEEEEECCCCeEEEEeccC
Q 004214 468 ------LRASFLTRGAQIVSC------------------------------------GADGLVKLWTVRTGECIATYDKH 505 (768)
Q Consensus 468 ------~~~~~s~~~~~l~s~------------------------------------~~dg~i~iwd~~~~~~~~~~~~~ 505 (768)
..++++|+...++.. ..+|.|..||+.+|+.+.+...+
T Consensus 378 ~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~ 457 (668)
T 1kv9_A 378 FGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP 457 (668)
T ss_dssp TCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES
T ss_pred ccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCC
Confidence 015677776665541 12478999999999998887633
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCHHH
Q 004214 506 EDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAE 540 (768)
Q Consensus 506 ~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~~~ 540 (768)
.+.....+...+.++++++.||.|+.||..+++.
T Consensus 458 -~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~ 491 (668)
T 1kv9_A 458 -THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEA 491 (668)
T ss_dssp -SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred -CCCcCceeEeCCCEEEEECCcccchhhhhhcChh
Confidence 3333334455788899999999999999887754
No 246
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.94 E-value=1.4e-06 Score=88.71 Aligned_cols=218 Identities=10% Similarity=0.048 Sum_probs=138.3
Q ss_pred CCCEEEEEeCCCcEEEEECCCc----eeeeeee------C-CccceEEEeeeeecCCCEEEEEEeCC------CeEEEEe
Q 004214 251 EEQYLAVATNIEQVQVYDLSSM----SCSYVLA------G-HSEIVLCLDTCALSSGKILIVTGSKD------NSVRLWD 313 (768)
Q Consensus 251 ~~~~l~~~~~~~~i~i~d~~~~----~~~~~~~------~-~~~~v~~l~~~~~~~~~~~l~~~~~d------g~i~iwd 313 (768)
...+++.+..++.|+++|+.+. +...++. . .......+. ..+++ +++++..+ |.|.++|
T Consensus 95 r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~--~~pdG--i~Vs~~g~~~g~~~g~v~vlD 170 (462)
T 2ece_A 95 RRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVH--CGPDA--IYISALGNEEGEGPGGILMLD 170 (462)
T ss_dssp SCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEE--ECSSC--EEEEEEEETTSCSCCEEEEEC
T ss_pred CCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCccccee--ECCCe--EEEEcCCCcCCCCCCeEEEEE
Confidence 3344555667899999998755 4555552 0 111222232 44555 45565554 7899999
Q ss_pred CCCceEEEeeecccCc---EEEEEEecCCCcEEEEEe-------------------CCCeEEEEeCCCCCCCCccccccc
Q 004214 314 SESRCCVGVGTGHMGA---VGAVAFSKKLQNFLVSGS-------------------SDHTIKVWSFDGLSDDAEQPMNLK 371 (768)
Q Consensus 314 ~~~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~s~~-------------------~dg~i~iwd~~~~~~~~~~~~~~~ 371 (768)
..+++.+..+.....+ -..+.|+|+++ .+++.. ...+|.+||+... +
T Consensus 171 ~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~-~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~----------k 239 (462)
T 2ece_A 171 HYSFEPLGKWEIDRGDQYLAYDFWWNLPNE-VLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR----------K 239 (462)
T ss_dssp TTTCCEEEECCSBCTTCCCCCCEEEETTTT-EEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT----------E
T ss_pred CCCCeEEEEEccCCCCccccceEEECCCCC-EEEEccCcCccccccccchhhhhhccCCEEEEEECCCC----------c
Confidence 9999999887633222 33577899976 666664 3789999999843 1
Q ss_pred eeeEeec--cCCCeEEEEE--ccCCCEEEEEe------CCCcEEEEeCCCCce--EEEE--ecc----------------
Q 004214 372 AKAVVAA--HGKDINSLAV--APNDSLVCTGS------QDRTACVWRLPDLVS--VVTF--RGH---------------- 421 (768)
Q Consensus 372 ~~~~~~~--~~~~i~~~~~--s~~~~~l~~~~------~dg~i~i~d~~~~~~--~~~~--~~~---------------- 421 (768)
....+.. .......+.| +|+++++.+++ .+++|.+|....+.. ...+ ...
T Consensus 240 ~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~ 319 (462)
T 2ece_A 240 RIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAV 319 (462)
T ss_dssp EEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEE
T ss_pred EeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccC
Confidence 2222221 1123445555 99999888877 456887776554421 1111 110
Q ss_pred CCCeEEEEEccCCCEEEEeeC-CCcEEEEeCCCC---ceeEEeecCC--------------CcEEEEEEEeCCCEEEEEe
Q 004214 422 KRGIWSVEFSPVDQVVITASG-DKTIKIWSISDG---SCLKTFEGHT--------------SSVLRASFLTRGAQIVSCG 483 (768)
Q Consensus 422 ~~~v~~v~~s~~~~~l~t~~~-d~~i~iwd~~~~---~~~~~~~~~~--------------~~v~~~~~s~~~~~l~s~~ 483 (768)
......+.+||||++|.++.. .+.|.+||+.+. +.+..+.... +....+.++|||++|+++.
T Consensus 320 ~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 320 PPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 234788999999999888765 689999998633 4455544210 1357799999999999887
No 247
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.92 E-value=0.00017 Score=79.23 Aligned_cols=429 Identities=11% Similarity=0.066 Sum_probs=221.1
Q ss_pred EeecCCCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEc
Q 004214 4 LLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAIT 83 (768)
Q Consensus 4 atg~~dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs 83 (768)
++-...+.|.+.+..+......+.+.-.....|++.|.+...++.-.+..+.|...++............-.....|+++
T Consensus 100 ~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald 179 (619)
T 3s94_A 100 WTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLD 179 (619)
T ss_dssp EEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEE
T ss_pred EEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEE
Confidence 33455677778777665433333345556778999997555222222335677777775433333333334567899999
Q ss_pred CCCCEEEEEe-CCCeEEEEECCCCeeeeeee-cceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcE
Q 004214 84 SDGSTLISAG-RDKVVNLWDLRDYSCKLTVP-TYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGI 161 (768)
Q Consensus 84 ~d~~~L~s~~-~dg~i~vWd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 161 (768)
+++..|+.+. ..+.|...|+.......... ....+..+++..+ ..+++-...+.
T Consensus 180 ~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~------------------------~ly~td~~~~~ 235 (619)
T 3s94_A 180 YEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED------------------------ILYWTDWSTHS 235 (619)
T ss_dssp TTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS------------------------EEEEECTTTCS
T ss_pred ccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC------------------------EEEEecCCCCE
Confidence 9877776664 45678888886543322211 0111122222211 13444445566
Q ss_pred EEEEEcCCceeeeecCCc----eeecc--cccCc---------ccceeEEE-EccCCCceEEEEecCeEEEEeeccCccc
Q 004214 162 VRMWNADSACLYEQKSSD----VTISF--EMDDS---------KRGFTAAT-VLPSNQGLLCVTADQQLLLYTTVEVPEK 225 (768)
Q Consensus 162 i~iwd~~~~~~~~~~~~~----~~~~~--~~~~~---------~~~~~~~~-~~~~~~~l~~~~~dg~i~~~~~~~~~~~ 225 (768)
|...|..++......... ..... ....+ ..+...++ ..|.....-|....|...
T Consensus 236 V~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l---------- 305 (619)
T 3s94_A 236 ILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKL---------- 305 (619)
T ss_dssp EEEEESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCB----------
T ss_pred EEEEECCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchhee----------
Confidence 777776665221110000 00000 00000 00000001 111111111111111100
Q ss_pred ceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeee-eee-CCccceEEEeeeeecCCCEEEEEE
Q 004214 226 KMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSY-VLA-GHSEIVLCLDTCALSSGKILIVTG 303 (768)
Q Consensus 226 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~-~~~-~~~~~v~~l~~~~~~~~~~~l~~~ 303 (768)
..+...|. .....+|+.+.. +.|+..++....... .+. ..-..+.+++ +.+.++.++++-
T Consensus 306 ------------~~d~~~C~---~~~~~~Ll~~~~-~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld--~d~~~~~ly~sD 367 (619)
T 3s94_A 306 ------------LENGKTCK---DGATELLLLARR-TDLRRISLDTPDFTDIVLQLEDIRHAIAID--YDPVEGYIYWTD 367 (619)
T ss_dssp ------------CTTSSCBC---SSCSEEEEEEES-SCEEEEESSSTTCCCEECCCSCCSSEEEEE--EETTTTEEEEEE
T ss_pred ------------cccCcccC---CCCceEEEEEcc-cceEEEecCCCccceeEEeccccCccEEEE--EEcCCCeEEEEe
Confidence 00001111 112345555554 678888887654321 121 1223456666 667677766666
Q ss_pred eCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCe
Q 004214 304 SKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDI 383 (768)
Q Consensus 304 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i 383 (768)
...+.|+.+++..................+++.+.+.++.++-+..+.|.+.++.+.. ........-...
T Consensus 368 ~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~----------~~~l~~~~l~~P 437 (619)
T 3s94_A 368 DEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTM----------RKILISEDLEEP 437 (619)
T ss_dssp TTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS----------CEEEECTTCCSE
T ss_pred CCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCe----------EEEEEECCCCCe
Confidence 6788999999876544333433345567889987767777777788999999887431 111112234567
Q ss_pred EEEEEccCCCEEEEEeC--CCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEee-CCCcEEEEeCCCCceeEEe
Q 004214 384 NSLAVAPNDSLVCTGSQ--DRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITAS-GDKTIKIWSISDGSCLKTF 460 (768)
Q Consensus 384 ~~~~~s~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~-~d~~i~iwd~~~~~~~~~~ 460 (768)
.+++++|....|..+.. .+.|...++............-...+.+++++++..|+.+. ..+.|..+++.. ...+++
T Consensus 438 ~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG-~~~~~~ 516 (619)
T 3s94_A 438 RAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDG-TGRRVL 516 (619)
T ss_dssp EEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSS-CCCEEE
T ss_pred eeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCC-CceEEE
Confidence 89999996445544443 35677777654333322333345678999998766666554 457798999854 333333
Q ss_pred -ecCCCcEEEEEEEeCCCEEEEEeC-CCcEEEEECCCCe
Q 004214 461 -EGHTSSVLRASFLTRGAQIVSCGA-DGLVKLWTVRTGE 497 (768)
Q Consensus 461 -~~~~~~v~~~~~s~~~~~l~s~~~-dg~i~iwd~~~~~ 497 (768)
...-.....++.. +.+|+.+.. .+.|...|..+|.
T Consensus 517 ~~~~l~~P~glav~--~~~ly~tD~~~~~I~~~~k~~g~ 553 (619)
T 3s94_A 517 VEDKIPHIFGFTLL--GDYVYWTDWQRRSIERVHKRSAE 553 (619)
T ss_dssp EECCCCSSCCEEEE--TTEEEEECTTSSCEEEEESSSCC
T ss_pred eccCCCCcEEEEEE--CCEEEEeecCCCeEEEEEcCCCc
Confidence 2222222344543 335555543 5577777777774
No 248
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.88 E-value=0.00023 Score=78.20 Aligned_cols=439 Identities=10% Similarity=0.041 Sum_probs=225.6
Q ss_pred ecCCCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCC
Q 004214 6 EGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSD 85 (768)
Q Consensus 6 g~~dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d 85 (768)
-...+.|.+.+.........+...-.....|++.|.....+..--+..+.|...++........+. .-.....|+++++
T Consensus 98 D~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~-~~~~P~GlalD~~ 176 (628)
T 4a0p_A 98 DTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP-NVGRANGLTIDYA 176 (628)
T ss_dssp ETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC-SCSSEEEEEEETT
T ss_pred ECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEEC-CCCCcceEEEccc
Confidence 344566777777654422223344556789999996555222222336778888875443332233 4456789999998
Q ss_pred CCEEEEEe-CCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEE
Q 004214 86 GSTLISAG-RDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRM 164 (768)
Q Consensus 86 ~~~L~s~~-~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i 164 (768)
+..|+.+. ..+.|...|+.................+++..+ ..+++-...+.|..
T Consensus 177 ~~~LY~aD~~~~~I~~~d~dG~~~~v~~~~l~~P~glav~~~------------------------~ly~tD~~~~~I~~ 232 (628)
T 4a0p_A 177 KRRLYWTDLDTNLIESSNMLGLNREVIADDLPHPFGLTQYQD------------------------YIYWTDWSRRSIER 232 (628)
T ss_dssp TTEEEEEETTTTEEEEEETTSCSCEEEEECCSCEEEEEEETT------------------------EEEEEETTTTEEEE
T ss_pred cCEEEEEECCCCEEEEEcCCCCceEEeeccCCCceEEEEECC------------------------EEEEecCCCCEEEE
Confidence 77777665 457899999865433111111112223333221 13344445566666
Q ss_pred EEcCCcee---eeecCC-ceeecccccCcccceeEEEEccCCCceEEEEec-CeEEEEeeccCcccceeeEEEeeecccC
Q 004214 165 WNADSACL---YEQKSS-DVTISFEMDDSKRGFTAATVLPSNQGLLCVTAD-QQLLLYTTVEVPEKKMELILSKRLVGYN 239 (768)
Q Consensus 165 wd~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-g~i~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (768)
.|..++.. +..... .................+.....+-.-+|.... +....-.... .....
T Consensus 233 ~dk~tg~~~~~l~~~~~~p~~i~v~~~~~q~~~n~C~~~ng~C~~~C~~~~~~~~~C~C~~g-------------~~l~~ 299 (628)
T 4a0p_A 233 ANKTSGQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAH-------------YSLNA 299 (628)
T ss_dssp EETTTCCSCEEEECSCCSCCEEEEECGGGSCCCCTTTTTGGGCSSEEEEETTTEEEEECSTT-------------CEECT
T ss_pred EECCCCCceEEEecCCCCcceeeeeeecccccceEeccCCCCcchhhhcCCCCCeeEEcCCC-------------cEecc
Confidence 66555411 110000 000000000000000000000000001222111 2211111000 00001
Q ss_pred CceeEEEEecCCCCEEEEEeCCCcEEEEECCCcee-eeeeeC-CccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCc
Q 004214 240 EEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSC-SYVLAG-HSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR 317 (768)
Q Consensus 240 ~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~-~~~~~~-~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 317 (768)
+...|. +...+++.+.. ..|+-+.+..... ...+.. .-..+..++ +.+.++.++++-...+.|+.++....
T Consensus 300 d~~~C~----~~~~~Ll~s~~-~~i~~i~l~~~~~~~~~l~~~~~~~~~~ld--~d~~~~~iy~sD~~~~~I~r~~~~g~ 372 (628)
T 4a0p_A 300 DNRTCS----APTTFLLFSQK-SAINRMVIDEQQSPDIILPIHSLRNVRAID--YDPLDKQLYWIDSRQNMIRKAQEDGS 372 (628)
T ss_dssp TSSCEE----CCSSEEEEEET-TEEEEECCCTTCCCCEECCCTTCSCEEEEE--EETTTTEEEEEETTTTEEEEEETTSC
T ss_pred cCCcCc----cccceeeeecc-ceEEEEecccccCceEEEEehhcCCceEEE--EecCCCeEEEEecCcceEEEEEcCCC
Confidence 111121 12345555543 5666666543321 112221 224466776 77777776666666788998887654
Q ss_pred eEEEeeec------ccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEcc-
Q 004214 318 CCVGVGTG------HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP- 390 (768)
Q Consensus 318 ~~~~~~~~------~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~- 390 (768)
.....+.. ....+..+++...+.++.++-+..+.|.+.+++.. .............+++++.|
T Consensus 373 ~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~G~----------~~~~l~~~~l~~Pr~iavdp~ 442 (628)
T 4a0p_A 373 QGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDGR----------SVGVVLKGEQDRPRAVVVNPE 442 (628)
T ss_dssp SCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSC----------EEEEEEECTTCCEEEEEEETT
T ss_pred CceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECCCC----------eEEEEEeCCCCceeeEEEecC
Confidence 33333322 23467899999988877788888899999988632 01122223345689999999
Q ss_pred CCCEEEEEeCCC--cEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEee-CCCcEEEEeCCCCceeEEee-cCCCc
Q 004214 391 NDSLVCTGSQDR--TACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITAS-GDKTIKIWSISDGSCLKTFE-GHTSS 466 (768)
Q Consensus 391 ~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~-~d~~i~iwd~~~~~~~~~~~-~~~~~ 466 (768)
.|.++.+-.... .|...++............-...+.+++.+.++.|+.+. ..+.|..+++. |...+.+. .....
T Consensus 443 ~g~ly~tD~g~~~~~I~r~~~dG~~~~~l~~~~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~d-G~~r~~~~~~~~~~ 521 (628)
T 4a0p_A 443 KGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLS-GANRIVLEDSNILQ 521 (628)
T ss_dssp TTEEEEEEEETTEEEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCSCEEEECSSCSC
T ss_pred CCeEEEeecCCCCCeEEEEeCCCCCcEEEEeccCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCC-CCceEEEEcCCCCC
Confidence 555555543332 566666654333333333344678999999876666554 45789999984 55455554 33345
Q ss_pred EEEEEEEeCCCEEEEEe-CCCcEEEEECCCCeEEEEe
Q 004214 467 VLRASFLTRGAQIVSCG-ADGLVKLWTVRTGECIATY 502 (768)
Q Consensus 467 v~~~~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~ 502 (768)
...++... .+|+.+. ..+.|...|..+|+....+
T Consensus 522 P~glav~~--~~ly~tD~~~~~i~~~~k~~G~~~~~i 556 (628)
T 4a0p_A 522 PVGLTVFE--NWLYWIDKQQQMIEKIDMTGREGRTKV 556 (628)
T ss_dssp EEEEEEET--TEEEEEETTTTEEEEEETTSSSCCEEE
T ss_pred cEEEEEEC--CEEEEEECCCCeEEEEECcCCCCcEEE
Confidence 56676644 3454444 4567888887777644444
No 249
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.88 E-value=7.7e-07 Score=97.13 Aligned_cols=283 Identities=11% Similarity=0.056 Sum_probs=171.9
Q ss_pred CCEEEEEeC-CCcEEEEEC-CCceeeeeeeCCccc-e---EE---EeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEe
Q 004214 252 EQYLAVATN-IEQVQVYDL-SSMSCSYVLAGHSEI-V---LC---LDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGV 322 (768)
Q Consensus 252 ~~~l~~~~~-~~~i~i~d~-~~~~~~~~~~~~~~~-v---~~---l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 322 (768)
+..+++++. ++.|.-+|. .+++.+......... + .| +.....-.++. ++.++.|+.+..+|..+++.+..
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~v~~~dg~l~alD~~tG~~~W~ 140 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQ-IVKKQANGHLLALDAKTGKINWE 140 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTE-EEEECTTSEEEEEETTTCCEEEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCE-EEEEeCCCEEEEEECCCCCEEEE
Confidence 346667777 789999999 899988766432210 0 00 00000112444 77888899999999999998876
Q ss_pred eecccC----cEE-EEEEecCCCcEEEEEeC------CCeEEEEeCCCCCCCCccccccceee-----------------
Q 004214 323 GTGHMG----AVG-AVAFSKKLQNFLVSGSS------DHTIKVWSFDGLSDDAEQPMNLKAKA----------------- 374 (768)
Q Consensus 323 ~~~~~~----~v~-~~~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~----------------- 374 (768)
...... .+. +..+. + . .+++++. ++.|..+|..++...-..........
T Consensus 141 ~~~~~~~~~~~~~~~P~v~-~-g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~ 217 (571)
T 2ad6_A 141 VEVCDPKVGSTLTQAPFVA-K-D-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQF 217 (571)
T ss_dssp EECCCGGGTCBCCSCCEEE-T-T-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCS
T ss_pred ecCCCCCccceeccCCEEE-C-C-EEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccccccc
Confidence 543210 111 11111 2 2 4555554 78999999886642111000000000
Q ss_pred -----------EeeccCCCeEEEEEccCCCEEEEEeCC----------------CcEEEEeCCCCceEEEEeccC-----
Q 004214 375 -----------VVAAHGKDINSLAVAPNDSLVCTGSQD----------------RTACVWRLPDLVSVVTFRGHK----- 422 (768)
Q Consensus 375 -----------~~~~~~~~i~~~~~s~~~~~l~~~~~d----------------g~i~i~d~~~~~~~~~~~~~~----- 422 (768)
...........+++++....+..++.+ +.|..+|..+++.+..++...
T Consensus 218 ~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d 297 (571)
T 2ad6_A 218 GLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWD 297 (571)
T ss_dssp SHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSC
T ss_pred ccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccc
Confidence 000000011245677776677776642 259999999999988776421
Q ss_pred -----CCeEEEEEccCCC---EEEEeeCCCcEEEEeCCCCceeEEeecCC-------------CcE--------------
Q 004214 423 -----RGIWSVEFSPVDQ---VVITASGDKTIKIWSISDGSCLKTFEGHT-------------SSV-------------- 467 (768)
Q Consensus 423 -----~~v~~v~~s~~~~---~l~t~~~d~~i~iwd~~~~~~~~~~~~~~-------------~~v-------------- 467 (768)
.++ -+...++|+ .++.++.+|.++++|..+|+.+..+.... .++
T Consensus 298 ~~~~~~p~-l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~ 376 (571)
T 2ad6_A 298 FAGVNQMV-LTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGT 376 (571)
T ss_dssp CCCCCCCE-EEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEE
T ss_pred cccCCCCE-EEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCce
Confidence 122 123334674 67788899999999999999887765221 111
Q ss_pred ------------EEEEEEeCCCEEEEEe-------------------------------------CCCcEEEEECCCCeE
Q 004214 468 ------------LRASFLTRGAQIVSCG-------------------------------------ADGLVKLWTVRTGEC 498 (768)
Q Consensus 468 ------------~~~~~s~~~~~l~s~~-------------------------------------~dg~i~iwd~~~~~~ 498 (768)
..++++|++..+++.. .+|.|..||..+|+.
T Consensus 377 ~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~ 456 (571)
T 2ad6_A 377 NICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKA 456 (571)
T ss_dssp EESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCE
T ss_pred EECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCE
Confidence 1356788777776653 357899999999999
Q ss_pred EEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCHHH
Q 004214 499 IATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAE 540 (768)
Q Consensus 499 ~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~~~ 540 (768)
+.++.. ...+.+..+...+..++.++.||.|+.||..+++.
T Consensus 457 ~W~~~~-~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~ 497 (571)
T 2ad6_A 457 KWTKWE-KFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKE 497 (571)
T ss_dssp EEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred EEEecC-CCCccceeEEECCCEEEEEcCCCeEEEEECCCCCE
Confidence 888763 23333333333566777899999999999887754
No 250
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.81 E-value=1.8e-06 Score=82.69 Aligned_cols=194 Identities=7% Similarity=0.034 Sum_probs=133.2
Q ss_pred cEEEEEEecCCCcEEEEEeC--CCeEEEEeCCCCCCCCccccccceeeEee-ccCCCeEEEEEccCCCEEEEEeCCCcEE
Q 004214 329 AVGAVAFSKKLQNFLVSGSS--DHTIKVWSFDGLSDDAEQPMNLKAKAVVA-AHGKDINSLAVAPNDSLVCTGSQDRTAC 405 (768)
Q Consensus 329 ~v~~~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~dg~i~ 405 (768)
....+.|++++ .++++.+. ++.|.++|+..+.. ..... ........+++.. +++.++.-.++.+.
T Consensus 22 f~~Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~tg~v----------~~~i~l~~~~fgeGi~~~g-~~lyv~t~~~~~v~ 89 (266)
T 2iwa_A 22 FTQGLVYAEND-TLFESTGLYGRSSVRQVALQTGKV----------ENIHKMDDSYFGEGLTLLN-EKLYQVVWLKNIGF 89 (266)
T ss_dssp CEEEEEECSTT-EEEEEECSTTTCEEEEEETTTCCE----------EEEEECCTTCCEEEEEEET-TEEEEEETTCSEEE
T ss_pred CcccEEEeCCC-eEEEECCCCCCCEEEEEECCCCCE----------EEEEecCCCcceEEEEEeC-CEEEEEEecCCEEE
Confidence 36789999984 34555443 68999999986532 11111 1111223455542 34444445678999
Q ss_pred EEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCC-----CcEEEEEEEeCCCEEE
Q 004214 406 VWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHT-----SSVLRASFLTRGAQIV 480 (768)
Q Consensus 406 i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~-----~~v~~~~~s~~~~~l~ 480 (768)
++|..+++.+.++...... ...+++||+.++++..++.|.++|..+.+.+.++.-.. ..++.+.|. +|...+
T Consensus 90 viD~~t~~v~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyv 166 (266)
T 2iwa_A 90 IYDRRTLSNIKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWA 166 (266)
T ss_dssp EEETTTTEEEEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEE
T ss_pred EEECCCCcEEEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEE
Confidence 9999999999888633111 23466778777777788999999999999888876321 236678888 775445
Q ss_pred EEeCCCcEEEEECCCCeEEEEeccCC-------------CcEEEEEEcCCCCE-EEEEeCCCcEEEEEcCC
Q 004214 481 SCGADGLVKLWTVRTGECIATYDKHE-------------DKIWALAVGKKTEM-FATGGSDALVNLWHDST 537 (768)
Q Consensus 481 s~~~dg~i~iwd~~~~~~~~~~~~~~-------------~~v~~l~~s~~~~~-l~s~~~dg~v~vw~~~~ 537 (768)
....++.|.+.|..+++.+..+.... .....++|+|+++. ++++...+.|.+-++.+
T Consensus 167 n~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 167 NIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL 237 (266)
T ss_dssp EETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred ecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence 55467899999999999999886321 34689999999865 55666788888888765
No 251
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.81 E-value=5.2e-07 Score=95.38 Aligned_cols=226 Identities=11% Similarity=0.045 Sum_probs=158.4
Q ss_pred EEEEEeCCCeEEEEeCCCceEEEeee---------------------c------------c------cCcEEEEEEec--
Q 004214 299 LIVTGSKDNSVRLWDSESRCCVGVGT---------------------G------------H------MGAVGAVAFSK-- 337 (768)
Q Consensus 299 ~l~~~~~dg~i~iwd~~~~~~~~~~~---------------------~------------~------~~~v~~~~~~~-- 337 (768)
.|.+|+..|.++++-+.+++.+..+. . + .+.......+.
T Consensus 17 ~f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~ 96 (595)
T 1fwx_A 17 GFWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTE 96 (595)
T ss_dssp EEECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEET
T ss_pred EEeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCC
Confidence 47788889999999888776665432 0 0 11122234443
Q ss_pred ---CCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEe-eccCCCeEEEEE-c-cCCCEEEEEe------------
Q 004214 338 ---KLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVV-AAHGKDINSLAV-A-PNDSLVCTGS------------ 399 (768)
Q Consensus 338 ---~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~-s-~~~~~l~~~~------------ 399 (768)
+|+.++++...++.|.+.|+... +..... ......+..+++ + |+++++++++
T Consensus 97 g~~DG~~lfVnd~~~~rVavIdl~t~----------~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~ 166 (595)
T 1fwx_A 97 GKYDGRFLFMNDKANTRVARVRCDVM----------KCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTN 166 (595)
T ss_dssp TEEEEEEEEEEETTTTEEEEEETTTT----------EEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSS
T ss_pred CCcCCCEEEEEcCCCCEEEEEECCCc----------eEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcc
Confidence 77766666667788999999843 222222 223355778887 5 9999999885
Q ss_pred ------CCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCC-----------------------------
Q 004214 400 ------QDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDK----------------------------- 444 (768)
Q Consensus 400 ------~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~----------------------------- 444 (768)
.++.+.+.|..+.+...++.--. ....++++|+|+++++++.+.
T Consensus 167 l~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v 245 (595)
T 1fwx_A 167 MEDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAI 245 (595)
T ss_dssp TTCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHH
T ss_pred cccccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEec
Confidence 24579999999998888877433 456788999999999888553
Q ss_pred ---------cEEEEeCCC--Cce-eEEeecCCCcEEEEEEEeCCCEEEEEeC-CCcEEEEECCCCe------------EE
Q 004214 445 ---------TIKIWSISD--GSC-LKTFEGHTSSVLRASFLTRGAQIVSCGA-DGLVKLWTVRTGE------------CI 499 (768)
Q Consensus 445 ---------~i~iwd~~~--~~~-~~~~~~~~~~v~~~~~s~~~~~l~s~~~-dg~i~iwd~~~~~------------~~ 499 (768)
.|.+.|..+ ++. +..+.. .....++.++|||+++++++. +.+|.++|+.+.+ .+
T Consensus 246 ~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~ 324 (595)
T 1fwx_A 246 AAGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVV 324 (595)
T ss_dssp HHTCSEEETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEE
T ss_pred cCCCeeEECcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceE
Confidence 477778776 544 455542 234557899999998877664 7799999998753 34
Q ss_pred EEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 004214 500 ATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDST 537 (768)
Q Consensus 500 ~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~ 537 (768)
..+. -......++|+|+|...++.--|+.|.+|++.+
T Consensus 325 ~~v~-vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 325 AEPE-LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp ECCB-CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred EEcC-CCCCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence 4443 345678899999995556777899999999654
No 252
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.80 E-value=0.00043 Score=76.05 Aligned_cols=471 Identities=11% Similarity=0.061 Sum_probs=263.3
Q ss_pred CCCcEEEEECCCCEEEEEEE-cCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCC
Q 004214 8 ADRKVLVWDVDGGFCTHYFK-GHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDG 86 (768)
Q Consensus 8 ~dg~i~vwd~~~~~~~~~l~-gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~ 86 (768)
....|+..++.+......+. +.-..+..|+|++.+.. +.++-..++.|..+++........+.........|++.+.+
T Consensus 13 ~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~-lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~ 91 (628)
T 4a0p_A 13 RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNR-IYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLG 91 (628)
T ss_dssp ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTT
T ss_pred eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCE-EEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCC
Confidence 57889999998764333322 23457889999997654 34555667889999986654444444333457889999876
Q ss_pred CEEEEE-eCCCeEEEEECCCCeeeeee-ecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEe-eCCcEEE
Q 004214 87 STLISA-GRDKVVNLWDLRDYSCKLTV-PTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITV-GERGIVR 163 (768)
Q Consensus 87 ~~L~s~-~~dg~i~vWd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~i~ 163 (768)
..|+.+ ...+.|.+.++........+ .....+..+++.|.... .+++- +..+.|.
T Consensus 92 ~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~----------------------lY~tD~g~~~~I~ 149 (628)
T 4a0p_A 92 KNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGF----------------------MYWTEWGGKPKID 149 (628)
T ss_dssp TEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTE----------------------EEEEECSSSCEEE
T ss_pred CEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCe----------------------EEEeCCCCCCEEE
Confidence 666544 45678999998754322222 22334566666664331 22222 3355666
Q ss_pred EEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEe-cCeEEEEeeccCcccceeeEEEeeecccCCce
Q 004214 164 MWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTA-DQQLLLYTTVEVPEKKMELILSKRLVGYNEEI 242 (768)
Q Consensus 164 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i 242 (768)
..++++....... ........+++.+.+..++.+.. .+.|..+++..... .. +.......
T Consensus 150 r~~~dG~~~~~l~-----------~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~---~v-----~~~~l~~P 210 (628)
T 4a0p_A 150 RAAMDGSERTTLV-----------PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR---EV-----IADDLPHP 210 (628)
T ss_dssp EEETTSCSCEEEE-----------CSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC---EE-----EEECCSCE
T ss_pred EEeCCCCceEEEE-----------CCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce---EE-----eeccCCCc
Confidence 6666655211110 01234567788888777766654 46777777654321 11 11122344
Q ss_pred eEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCcc------------------------ce--EEEe------e
Q 004214 243 LDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSE------------------------IV--LCLD------T 290 (768)
Q Consensus 243 ~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~------------------------~v--~~l~------~ 290 (768)
..+++.. +.++++-...+.|...|..+++....+..... .. .|+. .
T Consensus 211 ~glav~~--~~ly~tD~~~~~I~~~dk~tg~~~~~l~~~~~~p~~i~v~~~~~q~~~n~C~~~ng~C~~~C~~~~~~~~~ 288 (628)
T 4a0p_A 211 FGLTQYQ--DYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFV 288 (628)
T ss_dssp EEEEEET--TEEEEEETTTTEEEEEETTTCCSCEEEECSCCSCCEEEEECGGGSCCCCTTTTTGGGCSSEEEEETTTEEE
T ss_pred eEEEEEC--CEEEEecCCCCEEEEEECCCCCceEEEecCCCCcceeeeeeecccccceEeccCCCCcchhhhcCCCCCee
Confidence 5677653 34444444578888888766543332221100 00 1110 0
Q ss_pred eeecC--------------CCEEEEEEeCCCeEEEEeCCCceE--EEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEE
Q 004214 291 CALSS--------------GKILIVTGSKDNSVRLWDSESRCC--VGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKV 354 (768)
Q Consensus 291 ~~~~~--------------~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~i 354 (768)
|..+. ... ++.+. ...|+-..+..... .......-..+.+++|.+....++++=...+.|..
T Consensus 289 C~C~~g~~l~~d~~~C~~~~~~-Ll~s~-~~~i~~i~l~~~~~~~~~l~~~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r 366 (628)
T 4a0p_A 289 CGCPAHYSLNADNRTCSAPTTF-LLFSQ-KSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRK 366 (628)
T ss_dssp EECSTTCEECTTSSCEECCSSE-EEEEE-TTEEEEECCCTTCCCCEECCCTTCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred EEcCCCcEecccCCcCccccce-eeeec-cceEEEEecccccCceEEEEehhcCCceEEEEecCCCeEEEEecCcceEEE
Confidence 00011 111 11111 23344443332210 01111122457789999876766666666788888
Q ss_pred EeCCCCCCCCccccccceeeEeec------cCCCeEEEEEccCCCEE-EEEeCCCcEEEEeCCCCceEEEE-eccCCCeE
Q 004214 355 WSFDGLSDDAEQPMNLKAKAVVAA------HGKDINSLAVAPNDSLV-CTGSQDRTACVWRLPDLVSVVTF-RGHKRGIW 426 (768)
Q Consensus 355 wd~~~~~~~~~~~~~~~~~~~~~~------~~~~i~~~~~s~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~v~ 426 (768)
+++..... ...... ....+..+++.+.++.| .+-+..+.|.+.++. ++....+ ........
T Consensus 367 ~~~~g~~~----------~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~-G~~~~~l~~~~l~~Pr 435 (628)
T 4a0p_A 367 AQEDGSQG----------FTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD-GRSVGVVLKGEQDRPR 435 (628)
T ss_dssp EETTSCSC----------EEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCEEEEEEECTTCCEE
T ss_pred EEcCCCCc----------eEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC-CCeEEEEEeCCCCcee
Confidence 88764311 111111 23467899999976544 555667889999986 4443333 33456789
Q ss_pred EEEEcc-CCCEEEEeeCCC--cEEEEeCCCCceeEEe-ecCCCcEEEEEEEeCCCEEEEEeC-CCcEEEEECCCCeEEEE
Q 004214 427 SVEFSP-VDQVVITASGDK--TIKIWSISDGSCLKTF-EGHTSSVLRASFLTRGAQIVSCGA-DGLVKLWTVRTGECIAT 501 (768)
Q Consensus 427 ~v~~s~-~~~~l~t~~~d~--~i~iwd~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~s~~~-dg~i~iwd~~~~~~~~~ 501 (768)
++++.| .|.++.+-.... .|...++. |.....+ ...-...+.+++.+.+..|+.+.. .+.|...++.. .....
T Consensus 436 ~iavdp~~g~ly~tD~g~~~~~I~r~~~d-G~~~~~l~~~~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG-~~r~~ 513 (628)
T 4a0p_A 436 AVVVNPEKGYMYFTNLQERSPKIERAALD-GTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSG-ANRIV 513 (628)
T ss_dssp EEEEETTTTEEEEEEEETTEEEEEEEETT-SCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEE
T ss_pred eEEEecCCCeEEEeecCCCCCeEEEEeCC-CCCcEEEEeccCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCC-CceEE
Confidence 999999 555555543333 57777764 4444433 333456789999998888877765 57899999854 33333
Q ss_pred ec-cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCH
Q 004214 502 YD-KHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTA 538 (768)
Q Consensus 502 ~~-~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~ 538 (768)
+. .......+|++.. +..+.+-.....|...+..++
T Consensus 514 ~~~~~~~~P~glav~~-~~ly~tD~~~~~i~~~~k~~G 550 (628)
T 4a0p_A 514 LEDSNILQPVGLTVFE-NWLYWIDKQQQMIEKIDMTGR 550 (628)
T ss_dssp EECSSCSCEEEEEEET-TEEEEEETTTTEEEEEETTSS
T ss_pred EEcCCCCCcEEEEEEC-CEEEEEECCCCeEEEEECcCC
Confidence 32 2334567777754 455555555666666665543
No 253
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.79 E-value=3.7e-06 Score=91.82 Aligned_cols=132 Identities=10% Similarity=0.128 Sum_probs=90.8
Q ss_pred cCCC---EEEEEeCCCcEEEEeCCCCceEEEEeccC-------------CCe----------------------------
Q 004214 390 PNDS---LVCTGSQDRTACVWRLPDLVSVVTFRGHK-------------RGI---------------------------- 425 (768)
Q Consensus 390 ~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-------------~~v---------------------------- 425 (768)
.+|+ .++.++.+|.++++|..+++.+..+.... .++
T Consensus 331 ~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~G 410 (582)
T 1flg_A 331 KDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLG 410 (582)
T ss_dssp SSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTC
T ss_pred CCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCcc
Confidence 4674 78889999999999999999887665432 000
Q ss_pred ----EEEEEccCCCEEEEee---------------------------------CCCcEEEEeCCCCceeEEeecCCCcEE
Q 004214 426 ----WSVEFSPVDQVVITAS---------------------------------GDKTIKIWSISDGSCLKTFEGHTSSVL 468 (768)
Q Consensus 426 ----~~v~~s~~~~~l~t~~---------------------------------~d~~i~iwd~~~~~~~~~~~~~~~~v~ 468 (768)
..++++|+..++++.. .+|.|.-||+.+|+.+.+..... ++.
T Consensus 411 g~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~-~~~ 489 (582)
T 1flg_A 411 GKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL-PLW 489 (582)
T ss_dssp SSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS-CCC
T ss_pred ccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCC-CCc
Confidence 1346677655554432 36889999999999887776332 222
Q ss_pred EEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcE-EEEEEcCCCCEEE
Q 004214 469 RASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKI-WALAVGKKTEMFA 522 (768)
Q Consensus 469 ~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v-~~l~~s~~~~~l~ 522 (768)
.-.+...+..++.++.||.++.||.++|+.+.++....+.. .-+.+..+|+..+
T Consensus 490 ~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv 544 (582)
T 1flg_A 490 AGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYL 544 (582)
T ss_dssp SCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred ccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEE
Confidence 22333457788889999999999999999999987543322 1255666776433
No 254
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.79 E-value=2.4e-06 Score=80.62 Aligned_cols=180 Identities=13% Similarity=0.136 Sum_probs=123.9
Q ss_pred EEEEEEecCCCcEEEEEeCCC--eEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEE-eCCCcEEE
Q 004214 330 VGAVAFSKKLQNFLVSGSSDH--TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTG-SQDRTACV 406 (768)
Q Consensus 330 v~~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~dg~i~i 406 (768)
...+.|+ ++ .++.+.+.+| .|+.+|+.++.. ...... ........+.+++..|... -.++.+.+
T Consensus 45 tqGL~~~-~~-~LyestG~~g~S~v~~vD~~Tgkv----------~~~~~l-~~~~FgeGit~~g~~ly~ltw~~~~v~v 111 (262)
T 3nol_A 45 TEGFFYR-NG-YFYESTGLNGRSSIRKVDIESGKT----------LQQIEL-GKRYFGEGISDWKDKIVGLTWKNGLGFV 111 (262)
T ss_dssp EEEEEEE-TT-EEEEEEEETTEEEEEEECTTTCCE----------EEEEEC-CTTCCEEEEEEETTEEEEEESSSSEEEE
T ss_pred cceEEEE-CC-EEEEECCCCCCceEEEEECCCCcE----------EEEEec-CCccceeEEEEeCCEEEEEEeeCCEEEE
Confidence 4778888 43 5677777766 899999986532 111111 2233332233334455444 46889999
Q ss_pred EeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCC-----CcEEEEEEEeCCCEEEE
Q 004214 407 WRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHT-----SSVLRASFLTRGAQIVS 481 (768)
Q Consensus 407 ~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~-----~~v~~~~~s~~~~~l~s 481 (768)
||..+++.+.++.... ....++++++.|+.+..++.|.++|..+.+.+.++.-.. ..++.+.|. +|+..+.
T Consensus 112 ~D~~t~~~~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan 187 (262)
T 3nol_A 112 WNIRNLRQVRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFAN 187 (262)
T ss_dssp EETTTCCEEEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEE
T ss_pred EECccCcEEEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEE
Confidence 9999999999988533 223344677777777778899999999999988876421 334557776 7765555
Q ss_pred EeCCCcEEEEECCCCeEEEEeccC------------CCcEEEEEEcCCCCEEEEEeC
Q 004214 482 CGADGLVKLWTVRTGECIATYDKH------------EDKIWALAVGKKTEMFATGGS 526 (768)
Q Consensus 482 ~~~dg~i~iwd~~~~~~~~~~~~~------------~~~v~~l~~s~~~~~l~s~~~ 526 (768)
.-.++.|.+.|.++|+.+..+... ..-.+.++++|+++.|...|.
T Consensus 188 ~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 188 VWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp ETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred EccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 556889999999999999888642 134688999998887777664
No 255
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.77 E-value=1.1e-05 Score=87.89 Aligned_cols=174 Identities=9% Similarity=0.007 Sum_probs=102.3
Q ss_pred CeEEEEeCCCceEEEeeecccC----------cEEEEEEe-cCCC--cEEEEEeCCCeEEEEeCCCCCCCCcccccc---
Q 004214 307 NSVRLWDSESRCCVGVGTGHMG----------AVGAVAFS-KKLQ--NFLVSGSSDHTIKVWSFDGLSDDAEQPMNL--- 370 (768)
Q Consensus 307 g~i~iwd~~~~~~~~~~~~~~~----------~v~~~~~~-~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--- 370 (768)
+.|..+|..+++.+..++.... ++. +... .+|+ ..++.++.+|.+.++|..++..........
T Consensus 278 ~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~ 356 (599)
T 1w6s_A 278 MTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVN 356 (599)
T ss_dssp SEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCC
T ss_pred ceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcc
Confidence 4899999999998877664321 221 2222 3453 467778899999999987764321111000
Q ss_pred ----------cee--------------eEeec--cCCCeEEEEEccCCCEEEEEe-------------------------
Q 004214 371 ----------KAK--------------AVVAA--HGKDINSLAVAPNDSLVCTGS------------------------- 399 (768)
Q Consensus 371 ----------~~~--------------~~~~~--~~~~i~~~~~s~~~~~l~~~~------------------------- 399 (768)
.+. ....+ -...-..++++|+..++++..
T Consensus 357 ~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~ 436 (599)
T 1w6s_A 357 VFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATL 436 (599)
T ss_dssp SEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEE
T ss_pred cccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccc
Confidence 000 00000 001112456677655554421
Q ss_pred --------------CCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCC
Q 004214 400 --------------QDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTS 465 (768)
Q Consensus 400 --------------~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~ 465 (768)
.+|.+..||+.+++.+..... ..+...-.+...+.+++.++.|+.++.||.++|+.+.+++....
T Consensus 437 ~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~-~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g 515 (599)
T 1w6s_A 437 NMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKME-RFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSG 515 (599)
T ss_dssp EEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred eeccCCcCCcccCCCcCeEEEEECCCCCEEeEecC-CCCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCC
Confidence 347899999999988877652 22222212233477888899999999999999999998874332
Q ss_pred c-EEEEEEEeCCCE-EEEE
Q 004214 466 S-VLRASFLTRGAQ-IVSC 482 (768)
Q Consensus 466 ~-v~~~~~s~~~~~-l~s~ 482 (768)
. ..-+.+..+|++ +++.
T Consensus 516 ~~~~P~~y~~~G~qyv~~~ 534 (599)
T 1w6s_A 516 AIGYPMTYTHKGTQYVAIY 534 (599)
T ss_dssp CCSCCEEEEETTEEEEEEE
T ss_pred cEeccEEEEeCCEEEEEEE
Confidence 1 122455677764 4433
No 256
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.74 E-value=0.0012 Score=77.63 Aligned_cols=467 Identities=9% Similarity=0.064 Sum_probs=243.7
Q ss_pred CcEEEEECCCCEEEEEEEcC-CCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeE--EEecCccceeEEEEEcCC-
Q 004214 10 RKVLVWDVDGGFCTHYFKGH-KGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCV--ATLDKHFSRVTSMAITSD- 85 (768)
Q Consensus 10 g~i~vwd~~~~~~~~~l~gh-~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~--~~l~~h~~~V~~l~fs~d- 85 (768)
..|++.+...+..+...... ...|.+.+.+. .+ ++.++ ++.+.++.+..++.. .... -...|.|+++.|.
T Consensus 492 ~~Irli~~~~~~~~~~w~~p~~~~I~~As~n~--~~--vvva~-g~~l~~fel~~~~L~~~~~~~-l~~evscl~i~~~~ 565 (1158)
T 3ei3_A 492 ASVRLVSQEPKALVSEWKEPQAKNISVASCNS--SQ--VVVAV-GRALYYLQIHPQELRQISHTE-MEHEVACLDITPLG 565 (1158)
T ss_dssp SCEEEEESSSCCEEEEECCTTCCCCCEEEECS--SE--EEEEE-TTEEEEEEEETTEEEEEEEEE-CSSCEEEEECCCCS
T ss_pred CEEEEEECCCCeEEEEEECCCCCEEEEEEeCC--CE--EEEEE-CCEEEEEEeeCCceeeecccC-CCCceEEEEeecCC
Confidence 34556666555455555533 33566666553 34 44444 578888887665432 2211 3457999999863
Q ss_pred -----CCEEEEEeC-CCeEEEEECCCCeeeeeeecce--eEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEee
Q 004214 86 -----GSTLISAGR-DKVVNLWDLRDYSCKLTVPTYE--MVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVG 157 (768)
Q Consensus 86 -----~~~L~s~~~-dg~i~vWd~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (768)
+++++.|.. |++|+|+++.+.+.+....... .+.++++..-+ ...++..+-
T Consensus 566 ~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~---------------------~~~~L~igl 624 (1158)
T 3ei3_A 566 DSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFE---------------------SSHYLLCAL 624 (1158)
T ss_dssp SSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEET---------------------TEEEEEEEE
T ss_pred CCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeC---------------------CCcEEEEEe
Confidence 468888886 9999999998766654433211 22233222111 134788888
Q ss_pred CCcEEEEEEcC--CceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeee
Q 004214 158 ERGIVRMWNAD--SACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRL 235 (768)
Q Consensus 158 ~~g~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~ 235 (768)
.+|.+.-+.++ ++.+...+.. . -....+....+...+..-+.+..+....+|..... +.. ..+
T Consensus 625 ~dG~l~~~~~d~~tg~l~d~r~~--~------LG~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~~~------l~~-s~l 689 (1158)
T 3ei3_A 625 GDGALFYFGLNIETGLLSDRKKV--T------LGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHK------LVF-SNV 689 (1158)
T ss_dssp TTSEEEEEEECTTTCCEEEEEEE--E------CCSSCCEEEEEESSSCEEEEEESSSCEEEEESSSS------EEE-EEB
T ss_pred CCCeEEEEEEcCCCCccccceeE--E------cCCCceEEEEEeeCCceeEEEECCCCEEEEEcCCc------eEE-ecc
Confidence 99987655543 4433222110 0 00112222222222333344444444444443211 110 011
Q ss_pred cccCCceeE-EEEecCC-CCEEEEEeCCCcEEEEECCCcee--eeeeeCCccceEEEeeeeecCCCEEEEEEe-------
Q 004214 236 VGYNEEILD-LKFLGEE-EQYLAVATNIEQVQVYDLSSMSC--SYVLAGHSEIVLCLDTCALSSGKILIVTGS------- 304 (768)
Q Consensus 236 ~~~~~~i~~-~~~~~~~-~~~l~~~~~~~~i~i~d~~~~~~--~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~------- 304 (768)
.. ..+.. ..|+... ..-++..+. +.++|..+..... ++.++- ...+..++ +.+..+.+.+..+
T Consensus 690 -~~-~~v~~~~~F~se~~~~g~v~~~~-~~LrI~~i~~~~~~~~~~ipL-~~Tprri~--y~~~~~~~~v~~~~~~~~~~ 763 (1158)
T 3ei3_A 690 -NL-KEVNYMCPLNSDGYPDSLALANN-STLTIGTIDEIQKLHIRTVPL-YESPRKIC--YQEVSQCFGVLSSRIEVQDT 763 (1158)
T ss_dssp -SS-SCCCEEEEECCSSSTTEEEEECS-SCEEEEEECCSSSEEEEEEEC-SSEEEEEE--EEGGGTEEEEEEEEEEEECS
T ss_pred -Ch-HHhceEeccCcccCCCcEEEEcC-CceEEEEecccCCeeEEEEeC-CCCceEEE--EcCCCCEEEEEEEecccccc
Confidence 11 12323 3343322 234444443 5588877654321 111111 12223332 3333322111110
Q ss_pred -----------------------------------------CCCeEEEEeCCCceEEEeeec-ccCcEEEEE---EecCC
Q 004214 305 -----------------------------------------KDNSVRLWDSESRCCVGVGTG-HMGAVGAVA---FSKKL 339 (768)
Q Consensus 305 -----------------------------------------~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~---~~~~~ 339 (768)
.-+.|++.|..+.+.+..+.- ....+.+++ |..+.
T Consensus 764 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~ 843 (1158)
T 3ei3_A 764 SGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDP 843 (1158)
T ss_dssp SSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCC
T ss_pred ccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCC
Confidence 113577888877776655442 223344444 33344
Q ss_pred CcEEEEEe----------CCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeC
Q 004214 340 QNFLVSGS----------SDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRL 409 (768)
Q Consensus 340 ~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~ 409 (768)
..++++|+ ..|.|.+|++... ..+... .....+.|++++-- +|++++.. ...|++|++
T Consensus 844 ~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~--------kL~lv~-~~~v~g~v~al~~~-~g~Lla~i--g~~l~vy~l 911 (1158)
T 3ei3_A 844 NTYFIVGTAMVYPEEAEPKQGRIVVFQYSDG--------KLQTVA-EKEVKGAVYSMVEF-NGKLLASI--NSTVRLYEW 911 (1158)
T ss_dssp CCEEEEEEEECCTTCSSCCCEEEEEEEEETT--------EEEEEE-EEEESSCEEEEEEE-TTEEEEEE--TTEEEEEEE
T ss_pred CEEEEEEeeecCCCCCCCCceEEEEEEEECC--------EEEEEE-EEEcCCcCEEEeee-CCEEEEEc--CCEEEEEEC
Confidence 56888886 3578999988621 222222 22345778887644 45444433 478999999
Q ss_pred CCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeC--CCCceeEEee-cCCCcEEEEEEEeCCCEEEEEeCCC
Q 004214 410 PDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSI--SDGSCLKTFE-GHTSSVLRASFLTRGAQIVSCGADG 486 (768)
Q Consensus 410 ~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~--~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~~dg 486 (768)
...+.+..-..+-..|..+.....++++++|..-..|.++.. ..++....-. .+..+++++.|-.++ .++.+..+|
T Consensus 912 ~~~~~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld~~-t~l~aD~~g 990 (1158)
T 3ei3_A 912 TTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDD-NFLGAENAF 990 (1158)
T ss_dssp CTTSCEEEEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEEECCSCBCEEEEEEEETT-EEEEEETTS
T ss_pred CCCceEEEEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEEeecccccEEEEEEEccC-cEEEEcCCC
Confidence 866544411112222333344345788999988777777554 3333222221 355688999998765 677799999
Q ss_pred cEEEEECCCC-------e-E--EEEeccCCCcEEEEE---EcCC---------CCEEEEEeCCCcEEEEEcCCH
Q 004214 487 LVKLWTVRTG-------E-C--IATYDKHEDKIWALA---VGKK---------TEMFATGGSDALVNLWHDSTA 538 (768)
Q Consensus 487 ~i~iwd~~~~-------~-~--~~~~~~~~~~v~~l~---~s~~---------~~~l~s~~~dg~v~vw~~~~~ 538 (768)
.+.+...... + . ...+. ....|+++. +.+. ...++-++.+|.|.+.-.-++
T Consensus 991 Nl~vl~~~~~~~~~~~~~~L~~~~~fh-lG~~vt~~~~~sl~~~~~~~~~~~~~~~il~~T~~GsIg~l~pl~~ 1063 (1158)
T 3ei3_A 991 NLFVCQKDSAATTDEERQHLQEVGLFH-LGEFVNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLVTSLSE 1063 (1158)
T ss_dssp EEEEEEECTTCCSTTGGGBEEEEEEEE-CSSCEEEEEECCSCCC-------CEEEEEEEEETTSCEEEEEEECH
T ss_pred cEEEEecCCCCCCccccceeeeEEEEe-CCCcEeeEEeeeeecCCCccccccccceEEEEecCCEEEEEEEcCH
Confidence 9999875431 1 1 22332 344577765 2232 235788889999988876654
No 257
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.74 E-value=2.7e-06 Score=92.83 Aligned_cols=254 Identities=12% Similarity=0.085 Sum_probs=159.6
Q ss_pred CCEEEEEeCCCcEEEEECCCceeeeeeeCCcc----ceEEEeeeeecCCCEEEEEEeC------CCeEEEEeCCCceEEE
Q 004214 252 EQYLAVATNIEQVQVYDLSSMSCSYVLAGHSE----IVLCLDTCALSSGKILIVTGSK------DNSVRLWDSESRCCVG 321 (768)
Q Consensus 252 ~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~----~v~~l~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~ 321 (768)
+..+++++.++.+..+|..+++.......... .+.+- ....++. +++++. +|.|..+|..+++.+.
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~---P~v~~g~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W 190 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQA---PFVAKDT-VLMGCSGAELGVRGAVNAFDLKTGELKW 190 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSC---CEEETTE-EEEECBCGGGTCCCEEEEEETTTCCEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccC---CEEECCE-EEEEecCCccCCCCEEEEEECCCCcEEE
Confidence 45788888899999999999998876543221 11110 1112444 555554 7999999999999887
Q ss_pred eeecccCc-------------------------------------E-EEEEEecCCCcEEEEEeCC--------------
Q 004214 322 VGTGHMGA-------------------------------------V-GAVAFSKKLQNFLVSGSSD-------------- 349 (768)
Q Consensus 322 ~~~~~~~~-------------------------------------v-~~~~~~~~~~~~l~s~~~d-------------- 349 (768)
.+...... + ..+++.+... .++.++.+
T Consensus 191 ~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g-~vy~~~g~~~~~~~~~~~gd~~ 269 (571)
T 2ad6_A 191 RAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLN-LFYYGSGNPAPWNETMRPGDNK 269 (571)
T ss_dssp EEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTT-EEEEECCCCSCSCGGGSCSCCT
T ss_pred EEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCC-eEEEECCCCccccCCccCCCce
Confidence 65532110 0 1245666544 45555432
Q ss_pred --CeEEEEeCCCCCCCCccccccceeeEee--cc--------CCCeEEEEEccCCC---EEEEEeCCCcEEEEeCCCCce
Q 004214 350 --HTIKVWSFDGLSDDAEQPMNLKAKAVVA--AH--------GKDINSLAVAPNDS---LVCTGSQDRTACVWRLPDLVS 414 (768)
Q Consensus 350 --g~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~--------~~~i~~~~~s~~~~---~l~~~~~dg~i~i~d~~~~~~ 414 (768)
+.|..+|..++. ...... .| ..++ -+...++|+ .++.++.+|.++++|..+++.
T Consensus 270 y~~~v~Ald~~tG~----------~~W~~~~~~~d~~d~~~~~~p~-l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~ 338 (571)
T 2ad6_A 270 WTMTIWGRDLDTGM----------AKWGYQKTPHDEWDFAGVNQMV-LTDQPVNGKMTPLLSHIDRNGILYTLNRENGNL 338 (571)
T ss_dssp TTTEEEEEETTTCC----------EEEEEESSTTCSSCCCCCCCCE-EEEEEETTEEEEEEEEECTTSEEEEEETTTCCE
T ss_pred eEEEEEEEecCCCc----------EEEEecCCCCcccccccCCCCE-EEecccCCcEEEEEEEeCCCcEEEEEECCCCCE
Confidence 358888887553 111111 11 1122 122334674 677889999999999999998
Q ss_pred EEEEeccC-------------CCe--------------------------EEEEEccCCCEEEEee--------------
Q 004214 415 VVTFRGHK-------------RGI--------------------------WSVEFSPVDQVVITAS-------------- 441 (768)
Q Consensus 415 ~~~~~~~~-------------~~v--------------------------~~v~~s~~~~~l~t~~-------------- 441 (768)
+....... .++ ..++++|+..++++.+
T Consensus 339 ~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~ 418 (571)
T 2ad6_A 339 IVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPY 418 (571)
T ss_dssp EEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCC
T ss_pred EeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhcccccccccccc
Confidence 87665321 111 2467888877776653
Q ss_pred -----------------------CCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeE
Q 004214 442 -----------------------GDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGEC 498 (768)
Q Consensus 442 -----------------------~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 498 (768)
.+|.|..||+.+++.+.++... ..+....+...+..++.++.||.|+.||.++|+.
T Consensus 419 ~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~ 497 (571)
T 2ad6_A 419 RAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKE 497 (571)
T ss_dssp CTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred ccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCE
Confidence 3578999999999998887632 2333333445677888899999999999999999
Q ss_pred EEEeccCCCc-EEEEEEcCCCCEEE
Q 004214 499 IATYDKHEDK-IWALAVGKKTEMFA 522 (768)
Q Consensus 499 ~~~~~~~~~~-v~~l~~s~~~~~l~ 522 (768)
+.++...... -..+.+..+|+.++
T Consensus 498 lw~~~~~~~~~~~p~~~~~~G~~yv 522 (571)
T 2ad6_A 498 LWNFKMPSGGIGSPMTYSFKGKQYI 522 (571)
T ss_dssp EEEEECSSCCCSCCEEEEETTEEEE
T ss_pred EEEEeCCCCcEeeeEEEEECCEEEE
Confidence 9988743221 11233446676444
No 258
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.73 E-value=5e-06 Score=90.49 Aligned_cols=283 Identities=12% Similarity=0.077 Sum_probs=169.7
Q ss_pred CCEEEEEeC-CCcEEEEEC-CCceeeeeeeCCccc-----------eEEEeeeee-cCCC--EEEEEEeCCCeEEEEeCC
Q 004214 252 EQYLAVATN-IEQVQVYDL-SSMSCSYVLAGHSEI-----------VLCLDTCAL-SSGK--ILIVTGSKDNSVRLWDSE 315 (768)
Q Consensus 252 ~~~l~~~~~-~~~i~i~d~-~~~~~~~~~~~~~~~-----------v~~l~~~~~-~~~~--~~l~~~~~dg~i~iwd~~ 315 (768)
+..+++++. ++.|.-+|. .+++.+..+...... ...+. .. ..+. ..++.++.|+.+..+|..
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~a--v~p~~g~~~~rV~v~t~dg~l~AlDa~ 139 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLA--YWPGDGKTPALILKTQLDGNVAALNAE 139 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCE--EECCCSSSCCEEEEECTTSEEEEEETT
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceE--EEecCCcceeEEEEEcCCCEEEEEECC
Confidence 346777777 789999999 899988766443211 01111 21 1221 126778889999999999
Q ss_pred CceEEEeeecccC----cEEE-EEEecCCCcEEEEEe------CCCeEEEEeCCCCCCCCcccccccee-----------
Q 004214 316 SRCCVGVGTGHMG----AVGA-VAFSKKLQNFLVSGS------SDHTIKVWSFDGLSDDAEQPMNLKAK----------- 373 (768)
Q Consensus 316 ~~~~~~~~~~~~~----~v~~-~~~~~~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~~~~----------- 373 (768)
+|+.+........ .+.+ -.+. + . .+++++ .+|.|..+|..++...-.........
T Consensus 140 TG~~~W~~~~~~~~~~~~~~ssP~v~-~-g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~ 216 (599)
T 1w6s_A 140 TGETVWKVENSDIKVGSTLTIAPYVV-K-D-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIK 216 (599)
T ss_dssp TCCEEEEEECCCGGGTCBCCSCCEEE-T-T-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTT
T ss_pred CCCEEEeecCCCCCccceeecCCEEE-C-C-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccc
Confidence 9998876543210 1111 1111 2 2 355554 37899999988664211100000000
Q ss_pred ----------------eEe-eccCCCeEEEEEccCCCEEEEEeCCC----------------cEEEEeCCCCceEEEEec
Q 004214 374 ----------------AVV-AAHGKDINSLAVAPNDSLVCTGSQDR----------------TACVWRLPDLVSVVTFRG 420 (768)
Q Consensus 374 ----------------~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg----------------~i~i~d~~~~~~~~~~~~ 420 (768)
... .+....-..+++.+...+++.++.++ .|..+|..+++.+..++.
T Consensus 217 ~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~ 296 (599)
T 1w6s_A 217 NPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQK 296 (599)
T ss_dssp CGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEES
T ss_pred cccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeec
Confidence 000 00000112456777777888877653 799999999999888775
Q ss_pred cCCC---------eEEEEEc-cCC---CEEEEeeCCCcEEEEeCCCCceeEEeecCC-------------CcE-------
Q 004214 421 HKRG---------IWSVEFS-PVD---QVVITASGDKTIKIWSISDGSCLKTFEGHT-------------SSV------- 467 (768)
Q Consensus 421 ~~~~---------v~~v~~s-~~~---~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~-------------~~v------- 467 (768)
.... ..-+... .+| ..++.++.+|.+.++|..+|+.+....-.. .++
T Consensus 297 ~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~ 376 (599)
T 1w6s_A 297 TPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGT 376 (599)
T ss_dssp STTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCC
T ss_pred CCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCC
Confidence 3221 1112222 467 577888999999999999999887664211 111
Q ss_pred -------------------EEEEEEeCCCEEEEE---------------------------------e------CCCcEE
Q 004214 468 -------------------LRASFLTRGAQIVSC---------------------------------G------ADGLVK 489 (768)
Q Consensus 468 -------------------~~~~~s~~~~~l~s~---------------------------------~------~dg~i~ 489 (768)
..++++|+..++++. + .+|.|.
T Consensus 377 ~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~ 456 (599)
T 1w6s_A 377 RMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIK 456 (599)
T ss_dssp CTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEE
T ss_pred CCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEE
Confidence 134566665555432 1 347899
Q ss_pred EEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCHHH
Q 004214 490 LWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAE 540 (768)
Q Consensus 490 iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~~~ 540 (768)
.||+.+|+.+.+... ..+.++-.+...+..++.++.||.|+.||..+++.
T Consensus 457 A~D~~tG~~~W~~~~-~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~ 506 (599)
T 1w6s_A 457 AYNAITGDYKWEKME-RFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDL 506 (599)
T ss_dssp EECTTTCCEEEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred EEECCCCCEEeEecC-CCCccCcceEecCCEEEEECCCCeEEEEECCCCCE
Confidence 999999998887752 22222111223567778899999999999988754
No 259
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.71 E-value=5.8e-06 Score=79.12 Aligned_cols=194 Identities=8% Similarity=-0.067 Sum_probs=132.5
Q ss_pred eEEEeeeeecCCCEEEEEEeC--CCeEEEEeCCCceEEEeeecccC-cEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCC
Q 004214 285 VLCLDTCALSSGKILIVTGSK--DNSVRLWDSESRCCVGVGTGHMG-AVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLS 361 (768)
Q Consensus 285 v~~l~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 361 (768)
...+. +.++ +.++++.+. ++.|+++|+.+++.+..+..... ....+++. +..+.++.-.++.+.++|....
T Consensus 23 ~~Gl~--~~~d-g~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~- 96 (266)
T 2iwa_A 23 TQGLV--YAEN-DTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTL- 96 (266)
T ss_dssp EEEEE--ECST-TEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTT-
T ss_pred cccEE--EeCC-CeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCC-
Confidence 45665 5554 454454443 68999999999999887653222 22345554 4456666667899999998743
Q ss_pred CCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccC-----CCeEEEEEccCCCE
Q 004214 362 DDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHK-----RGIWSVEFSPVDQV 436 (768)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~v~~v~~s~~~~~ 436 (768)
+....+..... ....+++||+.++++..++.|.++|..+.+.+..+.-.. ..++.+.|. ++.+
T Consensus 97 ---------~v~~~i~~g~~--~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~l 164 (266)
T 2iwa_A 97 ---------SNIKNFTHQMK--DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEV 164 (266)
T ss_dssp ---------EEEEEEECCSS--SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEE
T ss_pred ---------cEEEEEECCCC--CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEE
Confidence 22222221101 123466788878777788999999999998888776322 136678888 6766
Q ss_pred EEEeeCCCcEEEEeCCCCceeEEeecC-------------CCcEEEEEEEeCCCEEEE-EeCCCcEEEEECCCC
Q 004214 437 VITASGDKTIKIWSISDGSCLKTFEGH-------------TSSVLRASFLTRGAQIVS-CGADGLVKLWTVRTG 496 (768)
Q Consensus 437 l~t~~~d~~i~iwd~~~~~~~~~~~~~-------------~~~v~~~~~s~~~~~l~s-~~~dg~i~iwd~~~~ 496 (768)
.+....++.|.+.|..+++.+..+... ......++|+|+++.|++ +...+.|.+.++...
T Consensus 165 yvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 165 WANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred EEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 666666889999999999999888632 135689999999876655 445778888877553
No 260
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.69 E-value=7.1e-06 Score=89.56 Aligned_cols=281 Identities=11% Similarity=0.055 Sum_probs=168.3
Q ss_pred CEEEEEeCCCcEEEEECCCceeeeeeeCCccce---------EEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEee
Q 004214 253 QYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIV---------LCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVG 323 (768)
Q Consensus 253 ~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v---------~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 323 (768)
..+++++..+.|.-+|..+++.+..+....... ..+. -.++. ++.++.++.|..+|..+++.+...
T Consensus 69 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a----~~~~~-v~~~t~dg~l~AlD~~TG~~~W~~ 143 (582)
T 1flg_A 69 GVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAA----IYGDK-VFFGTLDASVVALNKNTGKVVWKK 143 (582)
T ss_dssp TEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCE----EETTE-EEEEETTTEEEEEESSSCCEEEEE
T ss_pred CEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccE----EECCE-EEEEeCCCEEEEEECCCCCEEeee
Confidence 456666664559999999999887765433210 1111 12444 777889999999999999988765
Q ss_pred ecccC----cEE-EEEEec---CCCcEEEEEe------CCCeEEEEeCCCCCCCCcccccccee----------------
Q 004214 324 TGHMG----AVG-AVAFSK---KLQNFLVSGS------SDHTIKVWSFDGLSDDAEQPMNLKAK---------------- 373 (768)
Q Consensus 324 ~~~~~----~v~-~~~~~~---~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~~~~---------------- 373 (768)
..... .+. +-.+.. +++..+++++ .++.|..+|..++...-..+......
T Consensus 144 ~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~ 223 (582)
T 1flg_A 144 KFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKA 223 (582)
T ss_dssp ECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTC
T ss_pred cCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCccccccccccc
Confidence 53221 111 111111 1222455554 37889999887664221110000000
Q ss_pred ---------------eEeeccCCCeEEEEEccCCCEEEEEeC--------------------C----CcEEEEeCCCCce
Q 004214 374 ---------------AVVAAHGKDINSLAVAPNDSLVCTGSQ--------------------D----RTACVWRLPDLVS 414 (768)
Q Consensus 374 ---------------~~~~~~~~~i~~~~~s~~~~~l~~~~~--------------------d----g~i~i~d~~~~~~ 414 (768)
.........-..++++|...++++++. | +.|..+|..+++.
T Consensus 224 ~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~ 303 (582)
T 1flg_A 224 PSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEV 303 (582)
T ss_dssp TTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCE
T ss_pred ccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCE
Confidence 000000011134677887778877763 2 5899999999999
Q ss_pred EEEEec--cC--------CCeEEEEEc-cCCC---EEEEeeCCCcEEEEeCCCCceeEEeecCCC--cE-----------
Q 004214 415 VVTFRG--HK--------RGIWSVEFS-PVDQ---VVITASGDKTIKIWSISDGSCLKTFEGHTS--SV----------- 467 (768)
Q Consensus 415 ~~~~~~--~~--------~~v~~v~~s-~~~~---~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~--~v----------- 467 (768)
+..++. |. .++. +... .+|+ .++.++.+|.++++|..+|+.+..+..... ..
T Consensus 304 ~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~ 382 (582)
T 1flg_A 304 KWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPV 382 (582)
T ss_dssp EEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEE
T ss_pred EEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEe
Confidence 988764 21 1221 2222 4673 788899999999999999998876653310 00
Q ss_pred --------------------------------EEEEEEeCCCEEEEEe--------------------------------
Q 004214 468 --------------------------------LRASFLTRGAQIVSCG-------------------------------- 483 (768)
Q Consensus 468 --------------------------------~~~~~s~~~~~l~s~~-------------------------------- 483 (768)
..++++|+...+++..
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~ 462 (582)
T 1flg_A 383 EREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYD 462 (582)
T ss_dssp ECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCS
T ss_pred EccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCC
Confidence 0234555544444322
Q ss_pred -CCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCHHH
Q 004214 484 -ADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAE 540 (768)
Q Consensus 484 -~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~~~ 540 (768)
.+|.|..||+.+|+.+.+...+ .++..-.....+..++.|+.||.++.||..+++.
T Consensus 463 ~~~G~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~ 519 (582)
T 1flg_A 463 DHVGSLRAMDPVSGKVVWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKE 519 (582)
T ss_dssp SCSEEEEEECTTTCCEEEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred CCcceEEEEECCCCCEEEEecCC-CCCcccceEeCCCEEEEECCCCcEEEEECCCCCE
Confidence 3688999999999988777533 2222212222466788899999999999988754
No 261
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.67 E-value=8.5e-06 Score=76.82 Aligned_cols=181 Identities=10% Similarity=0.008 Sum_probs=124.2
Q ss_pred eEEEeeeeecCCCEEEEEEeCCC--eEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCC
Q 004214 285 VLCLDTCALSSGKILIVTGSKDN--SVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSD 362 (768)
Q Consensus 285 v~~l~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 362 (768)
...+. +. + +.++.+.+.+| .|+.+|+.+++.+........ .....+.+.+..+.++.-.++.+.+||..+..
T Consensus 45 tqGL~--~~-~-~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~-~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~- 118 (262)
T 3nol_A 45 TEGFF--YR-N-GYFYESTGLNGRSSIRKVDIESGKTLQQIELGKR-YFGEGISDWKDKIVGLTWKNGLGFVWNIRNLR- 118 (262)
T ss_dssp EEEEE--EE-T-TEEEEEEEETTEEEEEEECTTTCCEEEEEECCTT-CCEEEEEEETTEEEEEESSSSEEEEEETTTCC-
T ss_pred cceEE--EE-C-CEEEEECCCCCCceEEEEECCCCcEEEEEecCCc-cceeEEEEeCCEEEEEEeeCCEEEEEECccCc-
Confidence 35554 43 4 46577777766 999999999999888765432 22322333345556666678999999987542
Q ss_pred CCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEecc--C---CCeEEEEEccCCCEE
Q 004214 363 DAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGH--K---RGIWSVEFSPVDQVV 437 (768)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~---~~v~~v~~s~~~~~l 437 (768)
....+.... ....++++++.|+.+..++.|.++|..+.+.+..+... . ..++.+.|. +|++.
T Consensus 119 ---------~~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~ly 185 (262)
T 3nol_A 119 ---------QVRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIF 185 (262)
T ss_dssp ---------EEEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEE
T ss_pred ---------EEEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEE
Confidence 333322211 22344467777777776788999999999988877642 2 234567776 67766
Q ss_pred EEeeCCCcEEEEeCCCCceeEEeecC------------CCcEEEEEEEeCCCEEEEEeC
Q 004214 438 ITASGDKTIKIWSISDGSCLKTFEGH------------TSSVLRASFLTRGAQIVSCGA 484 (768)
Q Consensus 438 ~t~~~d~~i~iwd~~~~~~~~~~~~~------------~~~v~~~~~s~~~~~l~s~~~ 484 (768)
+..-.++.|.+.|..+|+.+..+... ....+.++|+|+++.|++.+.
T Consensus 186 an~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 186 ANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp EEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred EEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 66667889999999999999888632 135688999999888887775
No 262
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.66 E-value=3.9e-05 Score=78.06 Aligned_cols=236 Identities=9% Similarity=0.000 Sum_probs=148.0
Q ss_pred CEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEE
Q 004214 253 QYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGA 332 (768)
Q Consensus 253 ~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 332 (768)
.+|+.+.. ..|+.+++........+... ..+..++ +.+.++.++++-...+.|..+++..................
T Consensus 45 ~~ll~~~~-~~I~~i~~~g~~~~~~~~~~-~~~~~l~--~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~g 120 (349)
T 3v64_C 45 PVLLFANR-IDIRQVLPHRSEYTLLLNNL-ENAIALD--FHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGG 120 (349)
T ss_dssp CEEEEECB-SCEEEECTTSCCEEEEECSC-SCEEEEE--EETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCE
T ss_pred ceeEeecc-cceEEEeCCCCeeEEeecCC-CceEEEE--EeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccE
Confidence 34544443 56888888766554444433 3356666 66677776777777889999998876544443333344578
Q ss_pred EEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEe-CC-CcEEEEeCC
Q 004214 333 VAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGS-QD-RTACVWRLP 410 (768)
Q Consensus 333 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~d-g~i~i~d~~ 410 (768)
+++.+.+..++++-...+.|.+.++.... ..............++++|.+..|.... .. +.|..+++.
T Consensus 121 lavd~~~g~ly~~d~~~~~I~~~~~dG~~----------~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~d 190 (349)
T 3v64_C 121 LAVDWVHDKLYWTDSGTSRIEVANLDGAH----------RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD 190 (349)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCS----------CEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred EEEecCCCeEEEEcCCCCeEEEEcCCCCc----------eEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCC
Confidence 89988767677777778899999987431 1111222335678999999655555444 44 678888876
Q ss_pred CCceEEEEeccCCCeEEEEEccCCCEEEEe-eCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEE
Q 004214 411 DLVSVVTFRGHKRGIWSVEFSPVDQVVITA-SGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVK 489 (768)
Q Consensus 411 ~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~-~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~ 489 (768)
.......+...-.....++++|++..|+.+ ...+.|..+|+........+.........+++ ..+...++-...+.|.
T Consensus 191 G~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~ 269 (349)
T 3v64_C 191 GSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSIN 269 (349)
T ss_dssp SCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEE
T ss_pred CCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE-ECCEEEEecCCCCeEE
Confidence 433322222233457899999876655554 45678999998643333333333455677777 3444445555567888
Q ss_pred EEECCCCeEEEEec
Q 004214 490 LWTVRTGECIATYD 503 (768)
Q Consensus 490 iwd~~~~~~~~~~~ 503 (768)
.++..+|+.+..+.
T Consensus 270 ~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 270 SANKFTGKNQEIIR 283 (349)
T ss_dssp EEETTTCCSCEEEE
T ss_pred EEEccCCCccEEec
Confidence 88866776555543
No 263
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.65 E-value=6.7e-06 Score=77.45 Aligned_cols=177 Identities=13% Similarity=0.085 Sum_probs=123.5
Q ss_pred EEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCe--EEEEEccCCCEEEEEeCCCcEEEE
Q 004214 330 VGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDI--NSLAVAPNDSLVCTGSQDRTACVW 407 (768)
Q Consensus 330 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i--~~~~~s~~~~~l~~~~~dg~i~i~ 407 (768)
...+.|+. ..++++.+.+|.|+.+|+.++.... .. -.... -.+++.. +++.+..-.++.+.+|
T Consensus 57 tqGL~~~~--~~Ly~stG~~g~v~~iD~~Tgkv~~----------~~--l~~~~FgeGit~~g-~~Ly~ltw~~~~v~V~ 121 (268)
T 3nok_A 57 TQGLVFHQ--GHFFESTGHQGTLRQLSLESAQPVW----------ME--RLGNIFAEGLASDG-ERLYQLTWTEGLLFTW 121 (268)
T ss_dssp EEEEEEET--TEEEEEETTTTEEEECCSSCSSCSE----------EE--ECTTCCEEEEEECS-SCEEEEESSSCEEEEE
T ss_pred cceEEEEC--CEEEEEcCCCCEEEEEECCCCcEEe----------EE--CCCCcceeEEEEeC-CEEEEEEccCCEEEEE
Confidence 46788874 4578888889999999998653211 11 11222 2344432 3444445578899999
Q ss_pred eCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCC-----CcEEEEEEEeCCCEEEEE
Q 004214 408 RLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHT-----SSVLRASFLTRGAQIVSC 482 (768)
Q Consensus 408 d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~-----~~v~~~~~s~~~~~l~s~ 482 (768)
|..+++.+.++.... .-+.++ ++++.|+.+..++.|.++|..+.+.+.++.-.. ..++.+.|. +|+..+..
T Consensus 122 D~~Tl~~~~ti~~~~-eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanv 197 (268)
T 3nok_A 122 SGMPPQRERTTRYSG-EGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANI 197 (268)
T ss_dssp ETTTTEEEEEEECSS-CCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEE
T ss_pred ECCcCcEEEEEeCCC-ceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEE
Confidence 999999999988532 223444 568888888789999999999999988876322 244667776 77555555
Q ss_pred eCCCcEEEEECCCCeEEEEeccC-------------CCcEEEEEEcCCCCEEEEEe
Q 004214 483 GADGLVKLWTVRTGECIATYDKH-------------EDKIWALAVGKKTEMFATGG 525 (768)
Q Consensus 483 ~~dg~i~iwd~~~~~~~~~~~~~-------------~~~v~~l~~s~~~~~l~s~~ 525 (768)
..+..|.+.|.++|+.+..+... .+-.+.++++|+++.|...|
T Consensus 198 w~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 198 WHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp TTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred CCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 46789999999999999887632 13568899999766555554
No 264
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.65 E-value=4.1e-05 Score=79.16 Aligned_cols=247 Identities=9% Similarity=-0.010 Sum_probs=154.8
Q ss_pred CEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEE
Q 004214 253 QYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGA 332 (768)
Q Consensus 253 ~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 332 (768)
.+|+.+.. ..|+.+++........+... ..+..++ +.+.++.++++-...+.|..+++..................
T Consensus 88 ~~l~~~~~-~~I~~i~~~~~~~~~~~~~~-~~~~gl~--~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~g 163 (386)
T 3v65_B 88 PVLLFANR-IDIRQVLPHRSEYTLLLNNL-ENAIALD--FHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGG 163 (386)
T ss_dssp CEEEEECB-SCEEEECTTSCCCEEEECSC-SCEEEEE--EETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCC
T ss_pred ceeEeecC-ccceeeccCCCcEEEEecCC-CccEEEE--EecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccE
Confidence 34444443 67888888776655444433 3456666 66677776777777889999999876554444433344567
Q ss_pred EEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeC-C-CcEEEEeCC
Q 004214 333 VAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ-D-RTACVWRLP 410 (768)
Q Consensus 333 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-d-g~i~i~d~~ 410 (768)
+++.+.+..++++-...+.|.+.++.... ..............++++|.+..|+.+.. . +.|..+++.
T Consensus 164 lavd~~~g~lY~~d~~~~~I~~~~~dg~~----------~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~d 233 (386)
T 3v65_B 164 LAVDWVHDKLYWTDSGTSRIEVANLDGAH----------RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD 233 (386)
T ss_dssp EEEETTTTEEEEEETTTTEEEECBTTSCS----------CEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred EEEEeCCCeEEEEcCCCCeEEEEeCCCCc----------eEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCC
Confidence 88888767677777778888888876421 11112223356789999997666555543 3 678888876
Q ss_pred CCceEEEEeccCCCeEEEEEccCCCEEEEe-eCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEE
Q 004214 411 DLVSVVTFRGHKRGIWSVEFSPVDQVVITA-SGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVK 489 (768)
Q Consensus 411 ~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~-~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~ 489 (768)
...........-.....++|+|++..|+.+ +..+.|..+|+........+.........+++ ..+..+++-...+.|.
T Consensus 234 G~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~ 312 (386)
T 3v65_B 234 GSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSIN 312 (386)
T ss_dssp SCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEE
T ss_pred CCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEE
Confidence 543333333334457899999876655544 45678999998644333333333445677777 4444555555677898
Q ss_pred EEECCCCeEEEEeccCCCcEEEEEE
Q 004214 490 LWTVRTGECIATYDKHEDKIWALAV 514 (768)
Q Consensus 490 iwd~~~~~~~~~~~~~~~~v~~l~~ 514 (768)
.++..+|+.+..+.........+++
T Consensus 313 ~~~~~~G~~~~~i~~~~~~p~gi~v 337 (386)
T 3v65_B 313 SANKFTGKNQEIIRNKLHFPMDIHT 337 (386)
T ss_dssp EEETTTCCSCEEEECSCSCCCCEEE
T ss_pred EEECCCCcceEEEccCCCCCceEEE
Confidence 8887777766665433333334433
No 265
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.65 E-value=0.00014 Score=72.81 Aligned_cols=233 Identities=11% Similarity=0.063 Sum_probs=145.3
Q ss_pred EEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCC----ceEEEeeecccCc
Q 004214 254 YLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES----RCCVGVGTGHMGA 329 (768)
Q Consensus 254 ~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~ 329 (768)
+|+.+.. ..|+..|+.+......+.. ...+.+++ +.+.++.++++-...+.|..+++.. ......+......
T Consensus 3 ~ll~~~~-~~I~~i~~~~~~~~~~~~~-~~~p~g~~--~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~ 78 (316)
T 1ijq_A 3 YLFFTNR-HEVRKMTLDRSEYTSLIPN-LRNVVALD--TEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQA 78 (316)
T ss_dssp EEEEECB-SSEEEEETTSCCCEEEECS-CSSEEEEE--EETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSC
T ss_pred EEEEECC-CeEEEEECCCcceEehhcC-CCceEEEE--EEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCC
Confidence 4444444 6789999988766555443 34456666 6666777677777789999999876 2222223222234
Q ss_pred EEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCC--CcEEEE
Q 004214 330 VGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQD--RTACVW 407 (768)
Q Consensus 330 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d--g~i~i~ 407 (768)
...+++.+.+.+++++-...+.|.++++.... ..............++++|.+..|+.+... +.|..+
T Consensus 79 p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~----------~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~ 148 (316)
T 1ijq_A 79 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK----------RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKG 148 (316)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTSSS----------EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEE
T ss_pred cCEEEEeecCCeEEEEECCCCEEEEEeCCCCc----------eEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEE
Confidence 57889987666667777788999999986321 111222233567899999966655555543 678888
Q ss_pred eCCCCceEEEE-eccCCCeEEEEEccCCCEEEEee-CCCcEEEEeCCCCceeEEeec---CCCcEEEEEEEeCCCEEEEE
Q 004214 408 RLPDLVSVVTF-RGHKRGIWSVEFSPVDQVVITAS-GDKTIKIWSISDGSCLKTFEG---HTSSVLRASFLTRGAQIVSC 482 (768)
Q Consensus 408 d~~~~~~~~~~-~~~~~~v~~v~~s~~~~~l~t~~-~d~~i~iwd~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~s~ 482 (768)
++... ....+ ...-.....++++|++..|+.+. ..+.|..+|+. |...+.+.. .......+++. .+..+++-
T Consensus 149 ~~dG~-~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~d-g~~~~~~~~~~~~~~~P~giav~-~~~ly~~d 225 (316)
T 1ijq_A 149 GLNGV-DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN-GGNRKTILEDEKRLAHPFSLAVF-EDKVFWTD 225 (316)
T ss_dssp ETTSC-CEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCSCEEEEECTTTTSSEEEEEEE-TTEEEEEE
T ss_pred cCCCC-CeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecC-CCceEEEeecCCccCCcEEEEEE-CCEEEEEE
Confidence 87543 33333 22334678999998776665554 56789999986 433333321 22345677774 34445555
Q ss_pred eCCCcEEEEECCCCeEEEEec
Q 004214 483 GADGLVKLWTVRTGECIATYD 503 (768)
Q Consensus 483 ~~dg~i~iwd~~~~~~~~~~~ 503 (768)
...+.|..++..+|+.+..+.
T Consensus 226 ~~~~~V~~~~~~~g~~~~~i~ 246 (316)
T 1ijq_A 226 IINEAIFSANRLTGSDVNLLA 246 (316)
T ss_dssp TTTTEEEEEETTTCCCCEEEE
T ss_pred CCCCeEEEEeCCCCcceEEEe
Confidence 557789999987776555553
No 266
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.63 E-value=0.0023 Score=75.15 Aligned_cols=388 Identities=12% Similarity=0.098 Sum_probs=203.8
Q ss_pred CCcEEEEECCCCEEEEEE-EcCCCcEEEEEEeeCC----CccEEEEEeC-CCcEEEEECCCCeeEEEecC-ccceeEEEE
Q 004214 9 DRKVLVWDVDGGFCTHYF-KGHKGVVSSILFHPDT----DKSLLFSGSD-DATVRVWDLLAKKCVATLDK-HFSRVTSMA 81 (768)
Q Consensus 9 dg~i~vwd~~~~~~~~~l-~gh~~~V~~l~~spd~----~~~~l~sg~~-dg~I~iWd~~~~~~~~~l~~-h~~~V~~l~ 81 (768)
++.|.++++..+.....- ..-...|+|+++.|.+ +..++|.|.. |++|+|+++.+.+.+....- -.....++.
T Consensus 531 g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~ 610 (1158)
T 3ei3_A 531 GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSIL 610 (1158)
T ss_dssp TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEE
T ss_pred CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEE
Confidence 577888887766432211 1235689999998643 1245888986 99999999988776644321 112333443
Q ss_pred Ec--CCCCEEEEEeCCCeEEEEEC--CCCeeeeeee---cceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEE
Q 004214 82 IT--SDGSTLISAGRDKVVNLWDL--RDYSCKLTVP---TYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFI 154 (768)
Q Consensus 82 fs--~d~~~L~s~~~dg~i~vWd~--~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (768)
+. ....+|..+-.||.+..+.+ .+|.+..... ...++.-..+...+ ...++
T Consensus 611 l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~----------------------~~~V~ 668 (1158)
T 3ei3_A 611 MTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLS----------------------TTNVF 668 (1158)
T ss_dssp EEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECCSSCCEEEEEESSS----------------------CEEEE
T ss_pred EEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcCCCceEEEEEeeCC----------------------ceeEE
Confidence 32 23468888889998765544 4444332210 11111111111111 11333
Q ss_pred EeeCCcEEEEEEcCCceeeeecCCceeecccccCcccce-eEEEEccC--CCceEEEEecCeEEEEeeccCcccceeeEE
Q 004214 155 TVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGF-TAATVLPS--NQGLLCVTADQQLLLYTTVEVPEKKMELIL 231 (768)
Q Consensus 155 ~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~ 231 (768)
+.|+.-.+- +.-.+.-.+..... ..+ ....|+.. .+.++ ...++.+++..+.... .+..
T Consensus 669 a~s~rp~li-y~~~~~l~~s~l~~------------~~v~~~~~F~se~~~~g~v-~~~~~~LrI~~i~~~~----~~~~ 730 (1158)
T 3ei3_A 669 ACSDRPTVI-YSSNHKLVFSNVNL------------KEVNYMCPLNSDGYPDSLA-LANNSTLTIGTIDEIQ----KLHI 730 (1158)
T ss_dssp EESSSCEEE-EESSSSEEEEEBSS------------SCCCEEEEECCSSSTTEEE-EECSSCEEEEEECCSS----SEEE
T ss_pred EECCCCEEE-EEcCCceEEeccCh------------HHhceEeccCcccCCCcEE-EEcCCceEEEEecccC----CeeE
Confidence 333332222 22222101100000 111 22223222 23344 4445668888775432 1111
Q ss_pred EeeecccCCceeEEEEecCCCCEEEEEe------------------------------------------------CCCc
Q 004214 232 SKRLVGYNEEILDLKFLGEEEQYLAVAT------------------------------------------------NIEQ 263 (768)
Q Consensus 232 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~------------------------------------------------~~~~ 263 (768)
....-...+..++|++....+.+..+ ..+.
T Consensus 731 --~~ipL~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~ 808 (1158)
T 3ei3_A 731 --RTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHN 808 (1158)
T ss_dssp --EEEECSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEE
T ss_pred --EEEeCCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEE
Confidence 11112235555666543333222221 0134
Q ss_pred EEEEECCCceeeeeeeC-CccceEEEeeeeecCC-CEEEEEEe----------CCCeEEEEeCCCceEEEeee-cccCcE
Q 004214 264 VQVYDLSSMSCSYVLAG-HSEIVLCLDTCALSSG-KILIVTGS----------KDNSVRLWDSESRCCVGVGT-GHMGAV 330 (768)
Q Consensus 264 i~i~d~~~~~~~~~~~~-~~~~v~~l~~~~~~~~-~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~-~~~~~v 330 (768)
|+++|..+.+.+..+.- ....+.|+..+.+..+ ..+++.|+ ..|.|.+|++..++.....+ ...+++
T Consensus 809 i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v 888 (1158)
T 3ei3_A 809 LLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAV 888 (1158)
T ss_dssp EEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCE
T ss_pred EEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcC
Confidence 77888877776655432 3455677765555442 35688776 35889999987554333222 346788
Q ss_pred EEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeC-
Q 004214 331 GAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRL- 409 (768)
Q Consensus 331 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~- 409 (768)
++++--.. +|++|- ...|++|++..... ...... +-..|..+.....++++++|..-..+.++..
T Consensus 889 ~al~~~~g---~Lla~i-g~~l~vy~l~~~~~---------L~~~~~-~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~ 954 (1158)
T 3ei3_A 889 YSMVEFNG---KLLASI-NSTVRLYEWTTEKE---------LRTECN-HYNNIMALYLKTKGDFILVGDLMRSVLLLAYK 954 (1158)
T ss_dssp EEEEEETT---EEEEEE-TTEEEEEEECTTSC---------EEEEEE-ECCCSCEEEEEEETTEEEEEESSBCEEEEEEE
T ss_pred EEEeeeCC---EEEEEc-CCEEEEEECCCCce---------EEEEee-ccccEEEEEEeccCCEEEEEEhhheEEEEEEE
Confidence 88876543 344443 47899999874321 111111 1122333444446789999988877777654
Q ss_pred -CCCceEEEEe-ccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCC
Q 004214 410 -PDLVSVVTFR-GHKRGIWSVEFSPVDQVVITASGDKTIKIWSISD 453 (768)
Q Consensus 410 -~~~~~~~~~~-~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~ 453 (768)
...+....-+ .+...++++.|-.++ .++.+..+|++.++....
T Consensus 955 ~~~~~L~~~a~D~~~~~vta~~~ld~~-t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 955 PMEGNFEEIARDFNPNWMSAVEILDDD-NFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp TTTTEEEEEEECCSCBCEEEEEEEETT-EEEEEETTSEEEEEEECT
T ss_pred cCCCeEEEEEeecccccEEEEEEEccC-cEEEEcCCCcEEEEecCC
Confidence 3333332222 245578888887554 677789999999987643
No 267
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.61 E-value=2.4e-05 Score=73.09 Aligned_cols=189 Identities=11% Similarity=0.125 Sum_probs=126.0
Q ss_pred EEEeeeccc--CcEEEEEEecCCCcEEEEEeCC--CeEEEEeCCCCCCCCccccccceeeEeeccCCCeE--EEEEccCC
Q 004214 319 CVGVGTGHM--GAVGAVAFSKKLQNFLVSGSSD--HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDIN--SLAVAPND 392 (768)
Q Consensus 319 ~~~~~~~~~--~~v~~~~~~~~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~s~~~ 392 (768)
.+..+ .|. .-...+.|++ ..++.+.+.+ ..|+.+|+.++.. ...... ..... .+++. ++
T Consensus 11 v~~~~-phd~~~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv----------~~~~~l-~~~~fgeGi~~~-~~ 75 (243)
T 3mbr_X 11 VVKRY-PHDTTAFTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRI----------LQRAEV-PPPYFGAGIVAW-RD 75 (243)
T ss_dssp EEEEE-ECCTTCCEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCE----------EEEEEC-CTTCCEEEEEEE-TT
T ss_pred EEEEc-CCCCccccccEEEEC--CEEEEECCCCCCceEEEEECCCCCE----------EEEEeC-CCCcceeEEEEe-CC
Confidence 44444 343 3467888886 3466666665 4899999986532 111111 11222 33333 23
Q ss_pred CEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCC-----CcE
Q 004214 393 SLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHT-----SSV 467 (768)
Q Consensus 393 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~-----~~v 467 (768)
++....-.++.+.+||..+.+.+.++..... -+.++ +++..|+.+..++.|.++|..+.+.+.++.-.. ..+
T Consensus 76 ~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~-Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~l 152 (243)
T 3mbr_X 76 RLIQLTWRNHEGFVYDLATLTPRARFRYPGE-GWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNL 152 (243)
T ss_dssp EEEEEESSSSEEEEEETTTTEEEEEEECSSC-CCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCE
T ss_pred EEEEEEeeCCEEEEEECCcCcEEEEEeCCCC-ceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccc
Confidence 4445555788999999999999999885432 24444 567777777778999999999999988887422 244
Q ss_pred EEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccC-------------CCcEEEEEEcCCCCEEEEEeC
Q 004214 468 LRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKH-------------EDKIWALAVGKKTEMFATGGS 526 (768)
Q Consensus 468 ~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------------~~~v~~l~~s~~~~~l~s~~~ 526 (768)
+.+.+. +|+..+..-.+..|.+.|.++|+.+..+... ..-.+.++++|+++.|...|.
T Consensus 153 NeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 153 NELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred eeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 556655 6665555546779999999999999887622 134688999998777666653
No 268
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.60 E-value=0.00014 Score=73.92 Aligned_cols=248 Identities=11% Similarity=-0.005 Sum_probs=154.7
Q ss_pred ceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCcc
Q 004214 204 GLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSE 283 (768)
Q Consensus 204 ~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~ 283 (768)
..+..+..+.|...+...... ..+......+..++|.+.++.++.+-...+.|..+++........+.....
T Consensus 45 ~~ll~~~~~~I~~i~~~g~~~--------~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~ 116 (349)
T 3v64_C 45 PVLLFANRIDIRQVLPHRSEY--------TLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLE 116 (349)
T ss_dssp CEEEEECBSCEEEECTTSCCE--------EEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCS
T ss_pred ceeEeecccceEEEeCCCCee--------EEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCC
Confidence 344445555666665543211 111122345788899877777777767788999999887654444433333
Q ss_pred ceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCC-CeEEEEeCCCCCC
Q 004214 284 IVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSD-HTIKVWSFDGLSD 362 (768)
Q Consensus 284 ~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-g~i~iwd~~~~~~ 362 (768)
....++ +.+.++.+.++-...+.|.+.++..................+++.|.+..++++-... +.|..++++....
T Consensus 117 ~p~gla--vd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~ 194 (349)
T 3v64_C 117 SPGGLA--VDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR 194 (349)
T ss_dssp CCCEEE--EETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC
T ss_pred CccEEE--EecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCc
Confidence 344555 5556667677777788999999876544444444445678999999767666666555 7888888764311
Q ss_pred CCccccccceeeEeeccCCCeEEEEEccCCCEEEEEe-CCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEee
Q 004214 363 DAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGS-QDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITAS 441 (768)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~ 441 (768)
.......-...+.++++|++..|..+. ..+.|..+++........+.........+++ ..+.++++-.
T Consensus 195 ----------~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~ 263 (349)
T 3v64_C 195 ----------RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDW 263 (349)
T ss_dssp ----------EESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE-ETTEEEEEET
T ss_pred ----------EEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE-ECCEEEEecC
Confidence 111111234568999998666655554 5678999998754433334333445677887 3466666666
Q ss_pred CCCcEEEEeCCCCceeEEeecCCCcEEEEEE
Q 004214 442 GDKTIKIWSISDGSCLKTFEGHTSSVLRASF 472 (768)
Q Consensus 442 ~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 472 (768)
..+.|..++..+|+.+..+.........+++
T Consensus 264 ~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~v 294 (349)
T 3v64_C 264 HTKSINSANKFTGKNQEIIRNKLHFPMDIHT 294 (349)
T ss_dssp TTTEEEEEETTTCCSCEEEECSCSCCCCEEE
T ss_pred CCCeEEEEEccCCCccEEeccCCCCCceEEE
Confidence 7788999987778777776544333444444
No 269
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.57 E-value=1.2e-05 Score=75.77 Aligned_cols=173 Identities=8% Similarity=-0.000 Sum_probs=121.3
Q ss_pred CCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeE
Q 004214 296 GKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAV 375 (768)
Q Consensus 296 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 375 (768)
++.++.+.+.+|.|+.+|+.+++.+... .. .........+.+..+.++.-.++.+.+||..+. +....
T Consensus 64 ~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl----------~~~~t 131 (268)
T 3nok_A 64 QGHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASDGERLYQLTWTEGLLFTWSGMPP----------QRERT 131 (268)
T ss_dssp TTEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEECSSCEEEEESSSCEEEEEETTTT----------EEEEE
T ss_pred CCEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEeCCEEEEEEccCCEEEEEECCcC----------cEEEE
Confidence 4667888888999999999999887776 22 233332233345556777778899999998743 23333
Q ss_pred eeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccC--C---CeEEEEEccCCCEEEEeeCCCcEEEEe
Q 004214 376 VAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHK--R---GIWSVEFSPVDQVVITASGDKTIKIWS 450 (768)
Q Consensus 376 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~---~v~~v~~s~~~~~l~t~~~d~~i~iwd 450 (768)
+... ..-.. ++++++.|+.+..++.|.++|..+.+.+..+.-.. . .++.+.|. +|++.+....+..|.+.|
T Consensus 132 i~~~-~eGwG--Lt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vID 207 (268)
T 3nok_A 132 TRYS-GEGWG--LCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEID 207 (268)
T ss_dssp EECS-SCCCC--EEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEEC
T ss_pred EeCC-CceeE--EecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEe
Confidence 2221 22233 33667888887778999999999999888776422 2 34667777 677666666788999999
Q ss_pred CCCCceeEEeecC-------------CCcEEEEEEEeCCCEEEEEeC
Q 004214 451 ISDGSCLKTFEGH-------------TSSVLRASFLTRGAQIVSCGA 484 (768)
Q Consensus 451 ~~~~~~~~~~~~~-------------~~~v~~~~~s~~~~~l~s~~~ 484 (768)
..+|+.+..+... ....+.+++.|+++.|++.+.
T Consensus 208 p~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 208 PATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp TTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred CCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 9999999887621 135688999998777666554
No 270
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.57 E-value=0.00012 Score=75.75 Aligned_cols=250 Identities=12% Similarity=0.003 Sum_probs=156.8
Q ss_pred CceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCc
Q 004214 203 QGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHS 282 (768)
Q Consensus 203 ~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~ 282 (768)
..++..+..+.|+.+++..... ..+......+..++|.+.++.++.+-...+.|..++.........+....
T Consensus 87 ~~~l~~~~~~~I~~i~~~~~~~--------~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~ 158 (386)
T 3v65_B 87 EPVLLFANRIDIRQVLPHRSEY--------TLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGL 158 (386)
T ss_dssp CCEEEEECBSCEEEECTTSCCC--------EEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSC
T ss_pred cceeEeecCccceeeccCCCcE--------EEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCC
Confidence 3344555556677666544321 11112234578899987777777777778899999988765444443322
Q ss_pred cceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCC-CeEEEEeCCCCC
Q 004214 283 EIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSD-HTIKVWSFDGLS 361 (768)
Q Consensus 283 ~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-g~i~iwd~~~~~ 361 (768)
.....++ +.+.++.++++-...+.|.+.++..................+++.|.+..++++-... +.|..++++...
T Consensus 159 ~~p~gla--vd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~ 236 (386)
T 3v65_B 159 ESPGGLA--VDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG 236 (386)
T ss_dssp SCCCCEE--EETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS
T ss_pred CCccEEE--EEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCC
Confidence 3334454 5555666667777778899988876544444444445678999999877666665555 788888876431
Q ss_pred CCCccccccceeeEeeccCCCeEEEEEccCCCEEEEE-eCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEe
Q 004214 362 DDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTG-SQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITA 440 (768)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~ 440 (768)
........-...+.++++|++..|..+ +..+.|..+++........+.........+++ ..+.++++-
T Consensus 237 ----------~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td 305 (386)
T 3v65_B 237 ----------RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTD 305 (386)
T ss_dssp ----------CEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEE
T ss_pred ----------cEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEee
Confidence 111111223457899999866655555 45678999998654433334333445677888 446666777
Q ss_pred eCCCcEEEEeCCCCceeEEeecCCCcEEEEEEE
Q 004214 441 SGDKTIKIWSISDGSCLKTFEGHTSSVLRASFL 473 (768)
Q Consensus 441 ~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s 473 (768)
...+.|..+|..+|+.+..+.........+++.
T Consensus 306 ~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~v~ 338 (386)
T 3v65_B 306 WHTKSINSANKFTGKNQEIIRNKLHFPMDIHTL 338 (386)
T ss_dssp TTTTEEEEEETTTCCSCEEEECSCSCCCCEEEE
T ss_pred CCCCeEEEEECCCCcceEEEccCCCCCceEEEE
Confidence 778899999977888777776444444445443
No 271
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.55 E-value=3.9e-05 Score=77.34 Aligned_cols=231 Identities=11% Similarity=0.003 Sum_probs=143.5
Q ss_pred eecCCCEEEEEEeCCCeEEEEeCCCceEEEeee-------------------cccCcEEEEEEecCCCcEEEEEeCCCeE
Q 004214 292 ALSSGKILIVTGSKDNSVRLWDSESRCCVGVGT-------------------GHMGAVGAVAFSKKLQNFLVSGSSDHTI 352 (768)
Q Consensus 292 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------------------~~~~~v~~~~~~~~~~~~l~s~~~dg~i 352 (768)
+.+++.. ++++..++.|..|+..++....... ........+++.++... |+.+...+.|
T Consensus 26 ~d~~g~~-l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~d~~~~i 103 (322)
T 2fp8_A 26 FDSTNKG-FYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIVDCYYHL 103 (322)
T ss_dssp CCTTCSS-EEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEEETTTEE
T ss_pred EcCCCCE-EEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEEECCCCE
Confidence 4455543 7778888999999988764432211 01235788999973233 5555555567
Q ss_pred EEEeCCCCCCCCccccccceee-Eee-ccCCCeEEEEEcc-CCCEEEEEeC-----------------CCcEEEEeCCCC
Q 004214 353 KVWSFDGLSDDAEQPMNLKAKA-VVA-AHGKDINSLAVAP-NDSLVCTGSQ-----------------DRTACVWRLPDL 412 (768)
Q Consensus 353 ~iwd~~~~~~~~~~~~~~~~~~-~~~-~~~~~i~~~~~s~-~~~~l~~~~~-----------------dg~i~i~d~~~~ 412 (768)
..+|...... .... ... ......+.+++.+ +|++.++-.. ++.|..||..++
T Consensus 104 ~~~d~~~g~~--------~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~ 175 (322)
T 2fp8_A 104 SVVGSEGGHA--------TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTK 175 (322)
T ss_dssp EEECTTCEEC--------EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTT
T ss_pred EEEeCCCCEE--------EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCC
Confidence 7787653210 0000 000 1123468899999 9987776432 367888998776
Q ss_pred ceEEEEeccCCCeEEEEEccCCCEEEEe-eCCCcEEEEeCCCCc--eeEEeecCCCcEEEEEEEeCCCEEEEEeC-----
Q 004214 413 VSVVTFRGHKRGIWSVEFSPVDQVVITA-SGDKTIKIWSISDGS--CLKTFEGHTSSVLRASFLTRGAQIVSCGA----- 484 (768)
Q Consensus 413 ~~~~~~~~~~~~v~~v~~s~~~~~l~t~-~~d~~i~iwd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~s~~~----- 484 (768)
+...... .......++|+|+++.|+.+ ...+.|.+|++.... ....+....+ ...+++.++|++.++...
T Consensus 176 ~~~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~ 253 (322)
T 2fp8_A 176 ETTLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGN 253 (322)
T ss_dssp EEEEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSS
T ss_pred EEEEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCccccc
Confidence 5433222 22345679999999866555 556889999987421 1122221223 778999999987666544
Q ss_pred -----CCcEEEEECCCCeEEEEeccCC----CcEEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 004214 485 -----DGLVKLWTVRTGECIATYDKHE----DKIWALAVGKKTEMFATGGSDALVNLWHDS 536 (768)
Q Consensus 485 -----dg~i~iwd~~~~~~~~~~~~~~----~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~ 536 (768)
.+.|..+|. .++.+..+.... ..++++++ .+++.+++....+.|..+++.
T Consensus 254 ~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 254 MHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYD 312 (322)
T ss_dssp TTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC-
T ss_pred ccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEecc
Confidence 467888886 577777775442 34666666 467667776678889998875
No 272
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.54 E-value=0.0005 Score=71.22 Aligned_cols=247 Identities=10% Similarity=0.034 Sum_probs=155.0
Q ss_pred CEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCc----eEEEeeecccC
Q 004214 253 QYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR----CCVGVGTGHMG 328 (768)
Q Consensus 253 ~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~ 328 (768)
.+|+.+.. ..|+..++.......... ....+..++ +.+.++.++++-...+.|+.+++... ...........
T Consensus 84 ~~ll~~~~-~~I~~i~l~~~~~~~~~~-~~~~~~~l~--~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~ 159 (400)
T 3p5b_L 84 AYLFFTNR-HEVRKMTLDRSEYTSLIP-NLRNVVALD--TEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQ 159 (400)
T ss_dssp CEEEEEET-TEEEEECTTSCSCEEEEC-SCSCEEEEE--EETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCS
T ss_pred ceeEEecc-ceeEEEccCCcceeEecc-ccCcceEEe--eeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCC
Confidence 34444443 789999988766554443 344566776 66777776777677889999988752 22333333445
Q ss_pred cEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeC--CCcEEE
Q 004214 329 AVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ--DRTACV 406 (768)
Q Consensus 329 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~--dg~i~i 406 (768)
....+++.+.+.+++++-...+.|.+.++.... ..............++++|.+..|+.... .+.|..
T Consensus 160 ~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~----------~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~ 229 (400)
T 3p5b_L 160 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK----------RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKK 229 (400)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEECTTTCS----------EEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEE
T ss_pred CcccEEEEecCCceEEEECCCCeEEEEeCCCCc----------eEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEE
Confidence 678899998667677777788899999886431 12222223455789999997666665553 368888
Q ss_pred EeCCCCceEEEEeccCCCeEEEEEccCCCEEEEee-CCCcEEEEeCCCCceeEEeec--CCCcEEEEEEEeCCCEEEEEe
Q 004214 407 WRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITAS-GDKTIKIWSISDGSCLKTFEG--HTSSVLRASFLTRGAQIVSCG 483 (768)
Q Consensus 407 ~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~-~d~~i~iwd~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~s~~ 483 (768)
.++........+...-.....|+++|++..|+.+. ..+.|..+|+........... .-.....+++. .+..+++-.
T Consensus 230 ~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~ 308 (400)
T 3p5b_L 230 GGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDI 308 (400)
T ss_dssp EETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEES
T ss_pred EeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecC
Confidence 88865444333333345678999998777666654 467899999864333222222 22345566662 333444555
Q ss_pred CCCcEEEEECCCCeEEEEeccCCCcEEEEEE
Q 004214 484 ADGLVKLWTVRTGECIATYDKHEDKIWALAV 514 (768)
Q Consensus 484 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~ 514 (768)
..+.|..+|..+|+.+..+........++.+
T Consensus 309 ~~~~V~~~~~~~G~~~~~i~~~~~~p~~i~v 339 (400)
T 3p5b_L 309 INEAIFSANRLTGSDVNLLAENLLSPEDMVL 339 (400)
T ss_dssp SSCSEEEEESSSCCCCEEEECSCSCEEEEEE
T ss_pred CCCeEEEEEcCCCCceEEEecCCCCCceEEE
Confidence 5678999998888776666544444455543
No 273
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.50 E-value=0.00015 Score=72.34 Aligned_cols=236 Identities=10% Similarity=0.035 Sum_probs=144.1
Q ss_pred EEEEEeCCCcEEEEECCCce-eeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceE-EEeeecccCcEE
Q 004214 254 YLAVATNIEQVQVYDLSSMS-CSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC-VGVGTGHMGAVG 331 (768)
Q Consensus 254 ~l~~~~~~~~i~i~d~~~~~-~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~ 331 (768)
+|+.+. ...|+.+++.... ....+.........++ +.+.++.++++-...+.|..+++..+.. ............
T Consensus 6 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld--~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~ 82 (318)
T 3sov_A 6 LLLYAN-RRDLRLVDATNGKENATIVVGGLEDAAAVD--FVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPD 82 (318)
T ss_dssp EEEEEC-EEEEEEEETTCTTSCCEEEEEEEEEEEEEE--EEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCC
T ss_pred EEEEEc-cCeEEEEECCCCceEEEEEecCCCccEEEE--EEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCcc
Confidence 444443 3688889988764 1212222223445665 6666677677777788999999876532 112222223456
Q ss_pred EEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeC--CCcEEEEeC
Q 004214 332 AVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ--DRTACVWRL 409 (768)
Q Consensus 332 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~--dg~i~i~d~ 409 (768)
.+++.+.+..++++-...+.|.++++.... ..............++++|.+..|+.+.. .+.|..+++
T Consensus 83 glavd~~~g~ly~~d~~~~~I~~~~~dG~~----------~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~ 152 (318)
T 3sov_A 83 GLACDWLGEKLYWTDSETNRIEVSNLDGSL----------RKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGM 152 (318)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSCS----------CEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEET
T ss_pred EEEEEcCCCeEEEEECCCCEEEEEECCCCc----------EEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEc
Confidence 788888667677777778899999987431 11111233456789999997666666553 577888887
Q ss_pred CCCceEEEEeccCCCeEEEEEccCCCEEEEe-eCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcE
Q 004214 410 PDLVSVVTFRGHKRGIWSVEFSPVDQVVITA-SGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLV 488 (768)
Q Consensus 410 ~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~-~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i 488 (768)
............-.....++++|++..|+.+ +..+.|..+|+........+.+.......+++. .+..+.+-...+.|
T Consensus 153 dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~-~~~lywtd~~~~~V 231 (318)
T 3sov_A 153 DGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF-EDILYWTDWSTHSI 231 (318)
T ss_dssp TSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEE-TTEEEEEETTTTEE
T ss_pred CCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEe-CCEEEEEecCCCeE
Confidence 6433222222233456899999976655554 456789999986433222223334456677774 33344454556789
Q ss_pred EEEECCCCeEEEEec
Q 004214 489 KLWTVRTGECIATYD 503 (768)
Q Consensus 489 ~iwd~~~~~~~~~~~ 503 (768)
..++..+|+....+.
T Consensus 232 ~~~~~~~G~~~~~i~ 246 (318)
T 3sov_A 232 LACNKYTGEGLREIH 246 (318)
T ss_dssp EEEETTTCCSCEEEE
T ss_pred EEEECCCCCceEEEe
Confidence 999988887655553
No 274
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.48 E-value=0.00082 Score=67.18 Aligned_cols=236 Identities=11% Similarity=-0.033 Sum_probs=143.7
Q ss_pred EEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCC----ceeeeeeeCC
Q 004214 206 LCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSS----MSCSYVLAGH 281 (768)
Q Consensus 206 ~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~----~~~~~~~~~~ 281 (768)
+..+..+.|...++..... ..+......+..++|.+.++.++.+-...+.|..+++.. ......+...
T Consensus 4 ll~~~~~~I~~i~~~~~~~--------~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~ 75 (316)
T 1ijq_A 4 LFFTNRHEVRKMTLDRSEY--------TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD 75 (316)
T ss_dssp EEEECBSSEEEEETTSCCC--------EEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSS
T ss_pred EEEECCCeEEEEECCCcce--------EehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCC
Confidence 4444555666666654321 011122345678888876666777777778999999876 2222223222
Q ss_pred ccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCC-CeEEEEeCCCC
Q 004214 282 SEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSD-HTIKVWSFDGL 360 (768)
Q Consensus 282 ~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-g~i~iwd~~~~ 360 (768)
......++ +...++.+.++-...+.|.++++..................+++.|.+..++++.... +.|...+++..
T Consensus 76 ~~~p~gla--vd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~ 153 (316)
T 1ijq_A 76 IQAPDGLA--VDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV 153 (316)
T ss_dssp CSCCCEEE--EETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred CCCcCEEE--EeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCC
Confidence 23345555 4455666566767788999999876544444443445678999999767555555443 78888887632
Q ss_pred CCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEe-CCCcEEEEeCCCCceEEEEec--cCCCeEEEEEccCCCEE
Q 004214 361 SDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGS-QDRTACVWRLPDLVSVVTFRG--HKRGIWSVEFSPVDQVV 437 (768)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~--~~~~v~~v~~s~~~~~l 437 (768)
. ........-...+.++++|++..|..+. ..+.|..+|+........... .......+++. .+.++
T Consensus 154 ~----------~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly 222 (316)
T 1ijq_A 154 D----------IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVF 222 (316)
T ss_dssp C----------EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEE
T ss_pred C----------eEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEE
Confidence 1 1111112234578999999766665554 556899999874332222221 22345677775 36666
Q ss_pred EEeeCCCcEEEEeCCCCceeEEeec
Q 004214 438 ITASGDKTIKIWSISDGSCLKTFEG 462 (768)
Q Consensus 438 ~t~~~d~~i~iwd~~~~~~~~~~~~ 462 (768)
++-...+.|..++..+|+.+..+..
T Consensus 223 ~~d~~~~~V~~~~~~~g~~~~~i~~ 247 (316)
T 1ijq_A 223 WTDIINEAIFSANRLTGSDVNLLAE 247 (316)
T ss_dssp EEETTTTEEEEEETTTCCCCEEEEC
T ss_pred EEECCCCeEEEEeCCCCcceEEEec
Confidence 6777778999999888877766653
No 275
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.48 E-value=0.00017 Score=72.71 Aligned_cols=235 Identities=9% Similarity=-0.020 Sum_probs=141.1
Q ss_pred eeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeC-------------------CccceEEEeeeeecCCCEEEEE
Q 004214 242 ILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAG-------------------HSEIVLCLDTCALSSGKILIVT 302 (768)
Q Consensus 242 i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~-------------------~~~~v~~l~~~~~~~~~~~l~~ 302 (768)
..++++.+ ++.++.++..++.|..|+..++........ ....+.++. +.+.++. |+.
T Consensus 21 p~~i~~d~-~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~--~~~~~g~-l~v 96 (322)
T 2fp8_A 21 PNSFTFDS-TNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDIS--YNLQNNQ-LYI 96 (322)
T ss_dssp CCCEECCT-TCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEE--EETTTTE-EEE
T ss_pred ceEEEEcC-CCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEE--EcCCCCc-EEE
Confidence 34556654 566677888889999999876544321110 012356664 5543555 555
Q ss_pred EeCCCeEEEEeCCCceEEEeee---c-ccCcEEEEEEec-CCCcEEEEEeC-----------------CCeEEEEeCCCC
Q 004214 303 GSKDNSVRLWDSESRCCVGVGT---G-HMGAVGAVAFSK-KLQNFLVSGSS-----------------DHTIKVWSFDGL 360 (768)
Q Consensus 303 ~~~dg~i~iwd~~~~~~~~~~~---~-~~~~v~~~~~~~-~~~~~l~s~~~-----------------dg~i~iwd~~~~ 360 (768)
+...+.|..+|..++....... + .......+++.+ +|. +.++-.. ++.|..||....
T Consensus 97 ~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~ 175 (322)
T 2fp8_A 97 VDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGI-VYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTK 175 (322)
T ss_dssp EETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCC-EEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTT
T ss_pred EECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCE-EEEECCcccccccccceehcccCCCceEEEEeCCCC
Confidence 5555668889887664322111 1 123467899999 875 4444322 366777776432
Q ss_pred CCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEE-eCCCcEEEEeCCCCc--eEEEEeccCCCeEEEEEccCCCEE
Q 004214 361 SDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTG-SQDRTACVWRLPDLV--SVVTFRGHKRGIWSVEFSPVDQVV 437 (768)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~dg~i~i~d~~~~~--~~~~~~~~~~~v~~v~~s~~~~~l 437 (768)
. ...........+.++++|+++.|.++ +..+.|.+|++.... ....+..... ...+++.++|++.
T Consensus 176 ~-----------~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~ 243 (322)
T 2fp8_A 176 E-----------TTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFW 243 (322)
T ss_dssp E-----------EEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEE
T ss_pred E-----------EEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEE
Confidence 1 11111112345789999999866655 556889999987521 1122221223 7789999999877
Q ss_pred EEeeC----------CCcEEEEeCCCCceeEEeecCC----CcEEEEEEEeCCCEEEEEeCCCcEEEEECCC
Q 004214 438 ITASG----------DKTIKIWSISDGSCLKTFEGHT----SSVLRASFLTRGAQIVSCGADGLVKLWTVRT 495 (768)
Q Consensus 438 ~t~~~----------d~~i~iwd~~~~~~~~~~~~~~----~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 495 (768)
++... .+.|..+|. .++.+..+.... ..++.+++ .+++..++....+.|.++++..
T Consensus 244 va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 244 VSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp EEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred EEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 76644 467888886 577777776442 34666666 4665555555677888888753
No 276
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.47 E-value=8e-05 Score=69.63 Aligned_cols=180 Identities=13% Similarity=0.067 Sum_probs=122.4
Q ss_pred eEEEeeeeecCCCEEEEEEeCC--CeEEEEeCCCceEEEeeecccCcE-EEEEEecCCCcEEEEEeCCCeEEEEeCCCCC
Q 004214 285 VLCLDTCALSSGKILIVTGSKD--NSVRLWDSESRCCVGVGTGHMGAV-GAVAFSKKLQNFLVSGSSDHTIKVWSFDGLS 361 (768)
Q Consensus 285 v~~l~~~~~~~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 361 (768)
...+. +. + +.++.+.+.+ ..|+.+|+.+++.+.......... ..+++. +..+.+..-.++.+.+||..+.
T Consensus 23 tqGL~--~~-~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl- 95 (243)
T 3mbr_X 23 TEGLF--YL-R-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLATL- 95 (243)
T ss_dssp EEEEE--EE-T-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTT-
T ss_pred cccEE--EE-C-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECCcC-
Confidence 44554 33 3 4556666665 489999999999988776443321 233443 4556666677899999998743
Q ss_pred CCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccC-----CCeEEEEEccCCCE
Q 004214 362 DDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHK-----RGIWSVEFSPVDQV 436 (768)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~v~~v~~s~~~~~ 436 (768)
+....+.... . ...+++++..|+.+..++.|.++|..+.+.+.++.-.. ..++.+.+. +|++
T Consensus 96 ---------~~~~ti~~~~-~--Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~l 162 (243)
T 3mbr_X 96 ---------TPRARFRYPG-E--GWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGEL 162 (243)
T ss_dssp ---------EEEEEEECSS-C--CCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEE
T ss_pred ---------cEEEEEeCCC-C--ceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEE
Confidence 2333332222 2 23334667777777778899999999999888776432 245566665 5776
Q ss_pred EEEeeCCCcEEEEeCCCCceeEEeecC-------------CCcEEEEEEEeCCCEEEEEeC
Q 004214 437 VITASGDKTIKIWSISDGSCLKTFEGH-------------TSSVLRASFLTRGAQIVSCGA 484 (768)
Q Consensus 437 l~t~~~d~~i~iwd~~~~~~~~~~~~~-------------~~~v~~~~~s~~~~~l~s~~~ 484 (768)
.+....+..|.+.|..+|+.+..+... ....+.+++.|+++.|++.+.
T Consensus 163 yanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 163 LANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred EEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 666656789999999999999887621 135688999998888777664
No 277
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=98.46 E-value=0.0017 Score=65.02 Aligned_cols=295 Identities=13% Similarity=0.128 Sum_probs=188.3
Q ss_pred CcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCc
Q 004214 262 EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQN 341 (768)
Q Consensus 262 ~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 341 (768)
.+|.|.|+..+..+..-+-..+ .++ ..|..+. ++.-. ..++.++|+++...+..+.-....+ -=.|-.+ .
T Consensus 48 ~~vvIiDl~~~~~~~rrpi~Ad--sAI---MnP~~~i-iALra-g~~lQiFnle~K~klks~~~~e~Vv-fWkWis~-~- 117 (494)
T 1bpo_A 48 AQVVIIDMNDPSNPIRRPISAD--SAI---MNPASKV-IALKA-GKTLQIFNIEMKSKMKAHTMTDDVT-FWKWISL-N- 117 (494)
T ss_dssp CEEEEEETTSTTSCEEEECCCS--EEE---ECSSSSC-EEEEE-TTEEEEEETTTTEEEEEEECSSCCC-EEEEEET-T-
T ss_pred CeEEEEECCCCCcceecccccc--eee---eCCCCcE-EEEec-CCeEEEEchHHhhhhcceecCCCce-EEEecCC-C-
Confidence 4789999988665533222111 111 3344443 44443 7899999999999988877655443 3344333 2
Q ss_pred EEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeecc----CCCeEEEEEccCCCEEEEEeC-------CCcEEEEeCC
Q 004214 342 FLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAH----GKDINSLAVAPNDSLVCTGSQ-------DRTACVWRLP 410 (768)
Q Consensus 342 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~----~~~i~~~~~s~~~~~l~~~~~-------dg~i~i~d~~ 410 (768)
.|+-. .+..|.-|++.+.. .+...+..| ...|.....+++.++++..+- .|.+.+|..+
T Consensus 118 ~l~lV-T~taVyHWsi~~~s---------~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~e 187 (494)
T 1bpo_A 118 TVALV-TDNAVYHWSMEGES---------QPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD 187 (494)
T ss_dssp EEEEE-CSSEEEEEESSSSC---------CCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEEST
T ss_pred eEEEE-cCCeeEEecccCCC---------CchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecc
Confidence 33333 35689999997521 122222222 467788888899998775442 3678899876
Q ss_pred CCceEEEEeccCCCeEEEEEccCC---CEEEEeeC---CCcEEEEeCCCC---ce---eEE---ee---cCCCcEEEEEE
Q 004214 411 DLVSVVTFRGHKRGIWSVEFSPVD---QVVITASG---DKTIKIWSISDG---SC---LKT---FE---GHTSSVLRASF 472 (768)
Q Consensus 411 ~~~~~~~~~~~~~~v~~v~~s~~~---~~l~t~~~---d~~i~iwd~~~~---~~---~~~---~~---~~~~~v~~~~~ 472 (768)
.. ....+.||......+.+..+. ++++.+.. .+.++|-++... .+ .+. +. ...+...++..
T Consensus 188 r~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqv 266 (494)
T 1bpo_A 188 RK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQI 266 (494)
T ss_dssp TC-CEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEE
T ss_pred cc-ccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEe
Confidence 54 445577776655444433211 23333333 278999998542 11 111 11 22455667888
Q ss_pred EeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCHHHHHHHHHH---HH
Q 004214 473 LTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAEREEAFRK---EE 549 (768)
Q Consensus 473 s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~---~~ 549 (768)
++.-..++.-+.-|.|++||+.+|.++..-+-...+|..-+-+....-++.....|.|.--.++......-.... .+
T Consensus 267 s~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~ivpyi~~~l~n~~ 346 (494)
T 1bpo_A 267 SEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENIIPYITNVLQNPD 346 (494)
T ss_dssp ETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTTTHHHHHHHTTCCHH
T ss_pred cccCCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEccccchhhhhhccCCHH
Confidence 988888999999999999999999999988877888887777777777788889998888777766544322211 00
Q ss_pred -------------HHHHhhhHHHHhhcccchHHHHHHHhhc
Q 004214 550 -------------EAVLRGQELENAVLDADYTKAIQVAFEL 577 (768)
Q Consensus 550 -------------~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 577 (768)
......++++.++..++|.+|-..|...
T Consensus 347 lA~~lA~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~s 387 (494)
T 1bpo_A 347 LALRMAVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANA 387 (494)
T ss_dssp HHHHHHHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 0112345678888999999999888754
No 278
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.46 E-value=0.00014 Score=69.21 Aligned_cols=201 Identities=12% Similarity=0.152 Sum_probs=130.8
Q ss_pred eecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCC
Q 004214 323 GTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDR 402 (768)
Q Consensus 323 ~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg 402 (768)
+.+-...+..++++|++..++++...++.|...|.. +. . .......-....-.+++.+++.++++.-.++
T Consensus 22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~--------v-~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~ 91 (255)
T 3qqz_A 22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GD--------L-IRTIPLDFVKDLETIEYIGDNQFVISDERDY 91 (255)
T ss_dssp CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CC--------E-EEEEECSSCSSEEEEEECSTTEEEEEETTTT
T ss_pred CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CC--------E-EEEEecCCCCChHHeEEeCCCEEEEEECCCC
Confidence 445556799999999877677778888988888876 21 1 1111112235778899999998777766778
Q ss_pred cEEEEeCCCCce---EEEEe------ccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCC---CCceeEEee-------cC
Q 004214 403 TACVWRLPDLVS---VVTFR------GHKRGIWSVEFSPVDQVVITASGDKTIKIWSIS---DGSCLKTFE-------GH 463 (768)
Q Consensus 403 ~i~i~d~~~~~~---~~~~~------~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~---~~~~~~~~~-------~~ 463 (768)
.+.++++..... +.... ........++|+|.++.|+++.+.....||.+. ....+..+. .+
T Consensus 92 ~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~ 171 (255)
T 3qqz_A 92 AIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFT 171 (255)
T ss_dssp EEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCC
T ss_pred cEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccc
Confidence 899998765442 22221 134456899999999877777766555666553 111222221 12
Q ss_pred CCcEEEEEEEeCCC-EEEEEeCCCcEEEEECCCCeEEEEeccCC---------CcEEEEEEcCCCCEEEEEeCCCcEEEE
Q 004214 464 TSSVLRASFLTRGA-QIVSCGADGLVKLWTVRTGECIATYDKHE---------DKIWALAVGKKTEMFATGGSDALVNLW 533 (768)
Q Consensus 464 ~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---------~~v~~l~~s~~~~~l~s~~~dg~v~vw 533 (768)
...+..+++.|... +++.+..++.|.++|.. |+.+..+.-.. ...-.|+|.++|+..++ ++-..++.+
T Consensus 172 ~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f 249 (255)
T 3qqz_A 172 LDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRF 249 (255)
T ss_dssp SSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEE
T ss_pred cCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEE
Confidence 34567899998655 55566667789999964 66666554222 24678999999985555 666655555
Q ss_pred Ec
Q 004214 534 HD 535 (768)
Q Consensus 534 ~~ 535 (768)
..
T Consensus 250 ~~ 251 (255)
T 3qqz_A 250 TP 251 (255)
T ss_dssp EC
T ss_pred Ee
Confidence 43
No 279
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.46 E-value=0.0004 Score=69.25 Aligned_cols=137 Identities=9% Similarity=0.044 Sum_probs=83.3
Q ss_pred CCEEEEEEeCCCeEEEEeCCCceE-EEeee---------cccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCc
Q 004214 296 GKILIVTGSKDNSVRLWDSESRCC-VGVGT---------GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAE 365 (768)
Q Consensus 296 ~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~---------~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 365 (768)
+..++++...+|.|..+|..++.. +.... ........+ +++++.++++-...+.|..|++.....
T Consensus 127 ~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~--- 201 (306)
T 2p4o_A 127 DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDK--- 201 (306)
T ss_dssp SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSC---
T ss_pred CCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCC---
Confidence 344345544678888888876431 11000 111233445 788776777777889999999874110
Q ss_pred cccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEE--EEeccCCCeEEEEEc---cCCCEEEEe
Q 004214 366 QPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVV--TFRGHKRGIWSVEFS---PVDQVVITA 440 (768)
Q Consensus 366 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~v~~v~~s---~~~~~l~t~ 440 (768)
........ .......++++++|+++++....+.|.+++.. ++... .+.......++++|. |+++.|+++
T Consensus 202 ----~~~~~~~~-~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt 275 (306)
T 2p4o_A 202 ----PGEPEIFV-EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVV 275 (306)
T ss_dssp ----BCCCEEEE-ESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEE
T ss_pred ----CCccEEEe-ccCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEE
Confidence 00111111 11345778999999887777778899999975 55432 222233568999998 887777666
Q ss_pred eCC
Q 004214 441 SGD 443 (768)
Q Consensus 441 ~~d 443 (768)
+..
T Consensus 276 ~~~ 278 (306)
T 2p4o_A 276 TNG 278 (306)
T ss_dssp ECT
T ss_pred CCC
Confidence 553
No 280
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.44 E-value=0.0018 Score=66.99 Aligned_cols=250 Identities=11% Similarity=-0.037 Sum_probs=157.9
Q ss_pred CceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCc----eeeeee
Q 004214 203 QGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSM----SCSYVL 278 (768)
Q Consensus 203 ~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~----~~~~~~ 278 (768)
..++..+..+.|+..++..... ..+......+..++|.+.++.++.+-...+.|+.+++... .....+
T Consensus 83 ~~~ll~~~~~~I~~i~l~~~~~--------~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~ 154 (400)
T 3p5b_L 83 IAYLFFTNRHEVRKMTLDRSEY--------TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI 154 (400)
T ss_dssp SCEEEEEETTEEEEECTTSCSC--------EEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEE
T ss_pred cceeEEeccceeEEEccCCcce--------eEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEE
Confidence 3455666667777777654321 1112334567889998767766666667788999988752 223333
Q ss_pred eCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeC-CCeEEEEeC
Q 004214 279 AGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSS-DHTIKVWSF 357 (768)
Q Consensus 279 ~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-dg~i~iwd~ 357 (768)
.........++ ....++.+.++-...+.|.+.++........+.........+++.|.+..++++-.. .+.|...++
T Consensus 155 ~~~~~~p~gla--vD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~ 232 (400)
T 3p5b_L 155 SRDIQAPDGLA--VDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL 232 (400)
T ss_dssp CSSCSCEEEEE--EETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEET
T ss_pred eCCCCCcccEE--EEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeC
Confidence 33344556665 555566667777778899999998766555555445567899999976655555433 477888887
Q ss_pred CCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEe-CCCcEEEEeCCCCceEEEEec--cCCCeEEEEEccCC
Q 004214 358 DGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGS-QDRTACVWRLPDLVSVVTFRG--HKRGIWSVEFSPVD 434 (768)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~--~~~~v~~v~~s~~~ 434 (768)
+... ........-...+.|+++|++..|..+. ..+.|..+|+........... .-.....+++. .+
T Consensus 233 dG~~----------~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~ 301 (400)
T 3p5b_L 233 NGVD----------IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-ED 301 (400)
T ss_dssp TSCS----------CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TT
T ss_pred CCCc----------cEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CC
Confidence 6431 1111122235678999998777666664 457899999865443333332 22345577773 35
Q ss_pred CEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEE
Q 004214 435 QVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFL 473 (768)
Q Consensus 435 ~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s 473 (768)
.++++-...+.|..+|..+|+.+..+.........+...
T Consensus 302 ~lywtd~~~~~V~~~~~~~G~~~~~i~~~~~~p~~i~v~ 340 (400)
T 3p5b_L 302 KVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLF 340 (400)
T ss_dssp EEEEEESSSCSEEEEESSSCCCCEEEECSCSCEEEEEEE
T ss_pred EEEEecCCCCeEEEEEcCCCCceEEEecCCCCCceEEEE
Confidence 566666677889999988888887777555556666554
No 281
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.40 E-value=2.5e-05 Score=87.28 Aligned_cols=273 Identities=11% Similarity=0.029 Sum_probs=148.6
Q ss_pred EEEEecCCCCEEEEEeCCC-----------cEEEEECCCceeee--eeeC-CccceEEEeeeeecCCCEEEEEEe-CCCe
Q 004214 244 DLKFLGEEEQYLAVATNIE-----------QVQVYDLSSMSCSY--VLAG-HSEIVLCLDTCALSSGKILIVTGS-KDNS 308 (768)
Q Consensus 244 ~~~~~~~~~~~l~~~~~~~-----------~i~i~d~~~~~~~~--~~~~-~~~~v~~l~~~~~~~~~~~l~~~~-~dg~ 308 (768)
.+++.+.++.+++.|+.+. .+.+||..+++... .+.. +.....+.. +..++.. ++.|+ .++.
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~--~~~~g~l-yv~GG~~~~~ 266 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGIS--MDGNGQI-VVTGGNDAKK 266 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEE--ECTTSCE-EEECSSSTTC
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCcccccc--CCCCCCE-EEeCCCCCCc
Confidence 4555554777888876532 58889988776432 2221 111111221 3345554 66666 4568
Q ss_pred EEEEeCCCceEEEeeecccCc-EEEEEEecCCCcEEEEEe-CC-----CeEEEEeCCCCCCCCccccccceeeEeeccCC
Q 004214 309 VRLWDSESRCCVGVGTGHMGA-VGAVAFSKKLQNFLVSGS-SD-----HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGK 381 (768)
Q Consensus 309 i~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~s~~-~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (768)
+.+||..+++.......+... -.+++..++++ +++.|+ .+ ..+.+||.....-.........+... ..+
T Consensus 267 v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~-iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~-~~~-- 342 (656)
T 1k3i_A 267 TSLYDSSSDSWIPGPDMQVARGYQSSATMSDGR-VFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLT-ADK-- 342 (656)
T ss_dssp EEEEEGGGTEEEECCCCSSCCSSCEEEECTTSC-EEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCC-CCT--
T ss_pred eEEecCcCCceeECCCCCccccccceEEecCCe-EEEEeCcccCCcccccceEeCCCCCcceeCCCcccccccc-ccc--
Confidence 999999887655443322222 13445556755 677777 34 56889998643100000000000000 000
Q ss_pred CeEEEEEccCCCEEEEEeCCC---------cEEEEeCCCCceEEEEeccC---------CCeEEEEEcc-CCCEEEEeeC
Q 004214 382 DINSLAVAPNDSLVCTGSQDR---------TACVWRLPDLVSVVTFRGHK---------RGIWSVEFSP-VDQVVITASG 442 (768)
Q Consensus 382 ~i~~~~~s~~~~~l~~~~~dg---------~i~i~d~~~~~~~~~~~~~~---------~~v~~v~~s~-~~~~l~t~~~ 442 (768)
...+..++..++.|+.+| .+..||..+..-......+. ..-.++.|.. ++++++.|+.
T Consensus 343 ---~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~ 419 (656)
T 1k3i_A 343 ---QGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGS 419 (656)
T ss_dssp ---TGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCB
T ss_pred ---cceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCC
Confidence 011224555556665444 46788887765333222221 1234455543 6788888875
Q ss_pred CC-----------cEEEEeCCCCceeEEe--ecCCCcE-EEEEEEeCCCEEEEEeCC-----------CcEEEEECCCCe
Q 004214 443 DK-----------TIKIWSISDGSCLKTF--EGHTSSV-LRASFLTRGAQIVSCGAD-----------GLVKLWTVRTGE 497 (768)
Q Consensus 443 d~-----------~i~iwd~~~~~~~~~~--~~~~~~v-~~~~~s~~~~~l~s~~~d-----------g~i~iwd~~~~~ 497 (768)
++ .|.+||..+..-.... ..+.... .+++..|+|+.++.|+.+ ..+.+||..+++
T Consensus 420 ~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~ 499 (656)
T 1k3i_A 420 PDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDT 499 (656)
T ss_dssp SSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTE
T ss_pred CCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCc
Confidence 32 6888888776544332 2122222 344566899999999864 468999998876
Q ss_pred EEEEe--ccCCCcEEEEEEcCCCCEEEEEeC
Q 004214 498 CIATY--DKHEDKIWALAVGKKTEMFATGGS 526 (768)
Q Consensus 498 ~~~~~--~~~~~~v~~l~~s~~~~~l~s~~~ 526 (768)
....- ........+..+.|+++.++.||.
T Consensus 500 W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 500 FYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp EEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred eeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 43321 111112234456799999999985
No 282
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.37 E-value=0.00041 Score=69.17 Aligned_cols=225 Identities=8% Similarity=0.012 Sum_probs=132.1
Q ss_pred eEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCC-C-eEEEEeCCCCCC
Q 004214 285 VLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSD-H-TIKVWSFDGLSD 362 (768)
Q Consensus 285 v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-g-~i~iwd~~~~~~ 362 (768)
...++ +.+++. ++++...++.|..||..... ..... .......+++.+++. ++++.... + .|..++...+.
T Consensus 34 pegia--~~~~g~-lyv~d~~~~~I~~~d~~g~~-~~~~~-~~~~p~gia~~~dG~-l~vad~~~~~~~v~~~d~~~g~- 106 (306)
T 2p4o_A 34 LENLA--SAPDGT-IFVTNHEVGEIVSITPDGNQ-QIHAT-VEGKVSGLAFTSNGD-LVATGWNADSIPVVSLVKSDGT- 106 (306)
T ss_dssp EEEEE--ECTTSC-EEEEETTTTEEEEECTTCCE-EEEEE-CSSEEEEEEECTTSC-EEEEEECTTSCEEEEEECTTSC-
T ss_pred cceEE--ECCCCC-EEEEeCCCCeEEEECCCCce-EEEEe-CCCCceeEEEcCCCc-EEEEeccCCcceEEEEcCCCCe-
Confidence 44554 555554 46666678899999987643 32222 235688999999977 55554332 2 46556654331
Q ss_pred CCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCce-EEEEec---------cCCCeEEEEEcc
Q 004214 363 DAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVS-VVTFRG---------HKRGIWSVEFSP 432 (768)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~---------~~~~v~~v~~s~ 432 (768)
...... .........++..+++..+++-..++.|+++|..++.. +....+ .-.....+ +|
T Consensus 107 -------~~~~~~-~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~ 176 (306)
T 2p4o_A 107 -------VETLLT-LPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KR 176 (306)
T ss_dssp -------EEEEEE-CTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EE
T ss_pred -------EEEEEe-CCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--Cc
Confidence 111111 01122334555566555555554688999999876432 111111 11234445 78
Q ss_pred CCCEEEEe-eCCCcEEEEeCCC-Cce--eEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEE--EeccCC
Q 004214 433 VDQVVITA-SGDKTIKIWSISD-GSC--LKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIA--TYDKHE 506 (768)
Q Consensus 433 ~~~~l~t~-~~d~~i~iwd~~~-~~~--~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~ 506 (768)
+++.|+.+ ...+.|..|++.. +.. ...+.. ......+++.++|++.++....+.|.+++.. |+... .+...-
T Consensus 177 dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~ 254 (306)
T 2p4o_A 177 FGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGV 254 (306)
T ss_dssp ETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTC
T ss_pred CCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeeccccc
Confidence 88755544 4568899999864 332 122211 1234568899999887777777899999975 66532 344333
Q ss_pred CcEEEEEEc---CCCCEEEEEeCCC
Q 004214 507 DKIWALAVG---KKTEMFATGGSDA 528 (768)
Q Consensus 507 ~~v~~l~~s---~~~~~l~s~~~dg 528 (768)
...++++|. |++..|..++..+
T Consensus 255 ~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 255 IGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp TTEEEEEECCSTTTTTEEEEEECTT
T ss_pred CCceEEEEecccCCCCEEEEECCCC
Confidence 568999998 8887777665443
No 283
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.31 E-value=0.00026 Score=67.27 Aligned_cols=208 Identities=10% Similarity=0.122 Sum_probs=131.9
Q ss_pred eeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeC-CccceEEEeeeeecCCCEEEEEEeCCCeEEE
Q 004214 233 KRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAG-HSEIVLCLDTCALSSGKILIVTGSKDNSVRL 311 (768)
Q Consensus 233 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~i 311 (768)
+.+.+....+..++|.+.++.++++...++.|..+|.. ++..+.+.- .....-.++ +..++ .++++.-.++.+.+
T Consensus 20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa--~~~~g-~~~vs~E~~~~l~~ 95 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIE--YIGDN-QFVISDERDYAIYV 95 (255)
T ss_dssp EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEE--ECSTT-EEEEEETTTTEEEE
T ss_pred eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeE--EeCCC-EEEEEECCCCcEEE
Confidence 56778888999999998777788888889999999998 777776632 224455665 44444 44566667788999
Q ss_pred EeCCCceE---EEeee------cccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceee----Eeec
Q 004214 312 WDSESRCC---VGVGT------GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKA----VVAA 378 (768)
Q Consensus 312 wd~~~~~~---~~~~~------~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~----~~~~ 378 (768)
+++..... +.... ........++++|.+..+++ +.......+|.+....... ...... ....
T Consensus 96 ~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~v-a~E~~p~~i~~~~g~~~~~----~l~i~~~~~~~~~~ 170 (255)
T 3qqz_A 96 ISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWF-FKEKNPIEVYKVNGLLSSN----ELHISKDKALQRQF 170 (255)
T ss_dssp EEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEE-EEESSSEEEEEEESTTCSS----CCEEEECHHHHHTC
T ss_pred EEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEE-EECcCCceEEEEcccccCC----ceeeecchhhcccc
Confidence 88764332 22221 13345689999999775554 4444444555554211100 000000 0011
Q ss_pred cCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCceEEEEeccC---------CCeEEEEEccCCCEEEEeeCCCcEEE
Q 004214 379 HGKDINSLAVAP-NDSLVCTGSQDRTACVWRLPDLVSVVTFRGHK---------RGIWSVEFSPVDQVVITASGDKTIKI 448 (768)
Q Consensus 379 ~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---------~~v~~v~~s~~~~~l~t~~~d~~i~i 448 (768)
+-..+.+++++| .+++++....++.+..+|.. ++.+..+.-.. .....|+|.++|++.++ ++-+.+++
T Consensus 171 ~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~ 248 (255)
T 3qqz_A 171 TLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYR 248 (255)
T ss_dssp CSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEE
T ss_pred ccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEE
Confidence 234678999999 46667777777889999965 44555444221 25689999999985555 66666666
Q ss_pred EeC
Q 004214 449 WSI 451 (768)
Q Consensus 449 wd~ 451 (768)
|.-
T Consensus 249 f~~ 251 (255)
T 3qqz_A 249 FTP 251 (255)
T ss_dssp EEC
T ss_pred EEe
Confidence 653
No 284
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.31 E-value=0.0016 Score=64.84 Aligned_cols=249 Identities=13% Similarity=0.041 Sum_probs=149.1
Q ss_pred eEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceee-eeeeCCcc
Q 004214 205 LLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCS-YVLAGHSE 283 (768)
Q Consensus 205 l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~-~~~~~~~~ 283 (768)
++..+....|..+++...... ..... .....+..+.|.+.++.++.+-...+.|..++....... ..+...-.
T Consensus 6 ~ll~~~~~~I~~i~l~~~~~~-~~~~~-----~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~ 79 (318)
T 3sov_A 6 LLLYANRRDLRLVDATNGKEN-ATIVV-----GGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLL 79 (318)
T ss_dssp EEEEECEEEEEEEETTCTTSC-CEEEE-----EEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCS
T ss_pred EEEEEccCeEEEEECCCCceE-EEEEe-----cCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCC
Confidence 344555667777776544211 11111 111245678888767777777777788999998766422 12222222
Q ss_pred ceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEe-CCCeEEEEeCCCCCC
Q 004214 284 IVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGS-SDHTIKVWSFDGLSD 362 (768)
Q Consensus 284 ~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~ 362 (768)
....++ +...++.++++-...+.|.++++..................+++.|.+..++++-. ..+.|...+++...
T Consensus 80 ~p~gla--vd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~- 156 (318)
T 3sov_A 80 SPDGLA--CDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS- 156 (318)
T ss_dssp CCCEEE--EETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS-
T ss_pred CccEEE--EEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC-
Confidence 334454 44556666677677789999998765433333344456789999987664455442 35788888876421
Q ss_pred CCccccccceeeEeeccCCCeEEEEEccCCCEEEEEe-CCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEee
Q 004214 363 DAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGS-QDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITAS 441 (768)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~ 441 (768)
........-...+.++++|++..|..+. ..+.|..+|+..........+.......+++.. +.++.+-.
T Consensus 157 ---------~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~ 226 (318)
T 3sov_A 157 ---------RFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDW 226 (318)
T ss_dssp ---------CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEET
T ss_pred ---------eEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEec
Confidence 1111111224568999999666655554 567899999865433333333344566777753 45666666
Q ss_pred CCCcEEEEeCCCCceeEEeecCCCcEEEEEE
Q 004214 442 GDKTIKIWSISDGSCLKTFEGHTSSVLRASF 472 (768)
Q Consensus 442 ~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 472 (768)
..+.|..++..+|+....+.........++.
T Consensus 227 ~~~~V~~~~~~~G~~~~~i~~~~~~P~~i~v 257 (318)
T 3sov_A 227 STHSILACNKYTGEGLREIHSDIFSPMDIHA 257 (318)
T ss_dssp TTTEEEEEETTTCCSCEEEECCCSSCCCEEE
T ss_pred CCCeEEEEECCCCCceEEEeCCCCCCcEEEE
Confidence 7789999999888877776543333344443
No 285
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.25 E-value=0.00061 Score=71.30 Aligned_cols=232 Identities=9% Similarity=0.074 Sum_probs=134.5
Q ss_pred eec-CCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCC----eEEEEeCCCCCCCCcc
Q 004214 292 ALS-SGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDH----TIKVWSFDGLSDDAEQ 366 (768)
Q Consensus 292 ~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg----~i~iwd~~~~~~~~~~ 366 (768)
+.+ +++. |+.+...+.|+.+|+.++....... .......+++++++..++++...++ .+..++....
T Consensus 144 vdp~~~g~-Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~------ 215 (430)
T 3tc9_A 144 FDPKNHNH-LYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESG------ 215 (430)
T ss_dssp EETTEEEE-EEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGT------
T ss_pred ECCCCCCe-EEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCc------
Confidence 444 3455 4444444889999998876554433 4556789999999774555544322 2333433211
Q ss_pred ccccceeeEeeccCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCceEEEEec-cCCCeEEEEEccCCCEE-EEeeCC
Q 004214 367 PMNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQDRTACVWRLPDLVSVVTFRG-HKRGIWSVEFSPVDQVV-ITASGD 443 (768)
Q Consensus 367 ~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~v~~v~~s~~~~~l-~t~~~d 443 (768)
......+. .......++++| ++.++++-..++.|..|+..++........ .......++|+|+|++| ++-...
T Consensus 216 ---~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~ 291 (430)
T 3tc9_A 216 ---FKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQ 291 (430)
T ss_dssp ---SCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTT
T ss_pred ---eeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCC
Confidence 00001111 234567889999 777777766788999999887654222221 22346789999999954 455567
Q ss_pred CcEEEEeCCC--Cce--eEEeecC---------------CCcEE-EEEEE--------eCCCEEEEEeCCCcEEEEECCC
Q 004214 444 KTIKIWSISD--GSC--LKTFEGH---------------TSSVL-RASFL--------TRGAQIVSCGADGLVKLWTVRT 495 (768)
Q Consensus 444 ~~i~iwd~~~--~~~--~~~~~~~---------------~~~v~-~~~~s--------~~~~~l~s~~~dg~i~iwd~~~ 495 (768)
+.|..++... +.. +..+.+. -.... .++.. ++|.+.++=...+.|+.++ .+
T Consensus 292 ~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~-~~ 370 (430)
T 3tc9_A 292 HYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILT-PQ 370 (430)
T ss_dssp TEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEEC-TT
T ss_pred CEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEEC-CC
Confidence 8899987653 221 2222221 11123 34443 2344444444566888888 45
Q ss_pred CeEEEEecc----C-------------CCcEEEEEEcCC-CCEEEEEeCCCcEEEEEcC
Q 004214 496 GECIATYDK----H-------------EDKIWALAVGKK-TEMFATGGSDALVNLWHDS 536 (768)
Q Consensus 496 ~~~~~~~~~----~-------------~~~v~~l~~s~~-~~~l~s~~~dg~v~vw~~~ 536 (768)
|........ . -.....++++|+ +.++++-..+..|+.++++
T Consensus 371 G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 371 GRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp SEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 654333211 0 114789999994 6666666667778777653
No 286
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.24 E-value=0.0014 Score=73.61 Aligned_cols=233 Identities=12% Similarity=0.055 Sum_probs=145.6
Q ss_pred EEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCc----eEEEeeecccCc
Q 004214 254 YLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR----CCVGVGTGHMGA 329 (768)
Q Consensus 254 ~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~ 329 (768)
+|+.+ +...|+..++........+.. ...+..++ +...++.++++-...+.|+.+++... .....+......
T Consensus 397 ~Ll~a-n~~~Ir~i~l~~~~~~~l~~~-~~~~~gl~--~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~ 472 (791)
T 3m0c_C 397 YLFFT-NRHEVRKMTLDRSEYTSLIPN-LRNVVALD--TEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQA 472 (791)
T ss_dssp EEEEE-CBSSEEEECTTSCCCEEEECS-CSSEEEEE--EETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSC
T ss_pred ccccc-cccceeEeeccCCcceeeecC-CCceEEEe--ecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCC
Confidence 44443 446788888876655544443 44556676 66666776777777788999988753 223333334455
Q ss_pred EEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeC-C-CcEEEE
Q 004214 330 VGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ-D-RTACVW 407 (768)
Q Consensus 330 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-d-g~i~i~ 407 (768)
...|++.+.+.+++++-...+.|.+.++.... ..............|+++|.+..|+.+.. . +.|...
T Consensus 473 P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~----------~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~ 542 (791)
T 3m0c_C 473 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK----------RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKG 542 (791)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTSSS----------EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEE
T ss_pred cceeeeeecCCcEEEEecCCCeEEEEeCCCCe----------EEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEE
Confidence 67899998877778888888999999987431 12222233456889999997666665553 2 678888
Q ss_pred eCCCCceEEEEeccCCCeEEEEEccCCCEEEEe-eCCCcEEEEeCCCCceeEEeec--CCCcEEEEEEEeCCCEEEEEe-
Q 004214 408 RLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITA-SGDKTIKIWSISDGSCLKTFEG--HTSSVLRASFLTRGAQIVSCG- 483 (768)
Q Consensus 408 d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~-~~d~~i~iwd~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~s~~- 483 (768)
++........+...-.....|++++.+..|+.+ ...+.|..+++........+.. .-.....|++ ++.+|+.+.
T Consensus 543 ~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav--~~~~lYwtD~ 620 (791)
T 3m0c_C 543 GLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV--FEDKVFWTDI 620 (791)
T ss_dssp ETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEE--ETTEEEEEET
T ss_pred ecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEE--eCCEEEEEEC
Confidence 886544444444344578899999876666655 4457899999854433333332 1223445555 344565554
Q ss_pred CCCcEEEEECCCCeEEEEe
Q 004214 484 ADGLVKLWTVRTGECIATY 502 (768)
Q Consensus 484 ~dg~i~iwd~~~~~~~~~~ 502 (768)
..+.|...+..+|+.+..+
T Consensus 621 ~~~~I~~~dk~tG~~~~~l 639 (791)
T 3m0c_C 621 INEAIFSANRLTGSDVNLL 639 (791)
T ss_dssp TTTEEEEEETTTCCCCEEE
T ss_pred CCCEEEEEeCCCCcceEEe
Confidence 4567888887777655444
No 287
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.17 E-value=0.001 Score=69.62 Aligned_cols=230 Identities=13% Similarity=0.069 Sum_probs=138.3
Q ss_pred eecC--CCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCC---Ce-EEEEeCCCCCCCCc
Q 004214 292 ALSS--GKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSD---HT-IKVWSFDGLSDDAE 365 (768)
Q Consensus 292 ~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---g~-i~iwd~~~~~~~~~ 365 (768)
+.++ ++. |+.+...+.|+.+|..++....... .......+++++++. ++++.... .. +...+....
T Consensus 146 vd~~s~~g~-Lyv~D~~~~I~~id~~~g~v~~~~~-~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~----- 217 (433)
T 4hw6_A 146 FDPNSNYDD-LYWVGQRDAFRHVDFVNQYVDIKTT-NIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASG----- 217 (433)
T ss_dssp ECTTTTTCE-EEEECBTSCEEEEETTTTEEEEECC-CCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGT-----
T ss_pred EccccCCCE-EEEEeCCCCEEEEECCCCEEEEeec-CCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCC-----
Confidence 4452 455 4444444899999998887665443 445688999999987 55554422 11 222222111
Q ss_pred cccccceeeEeeccCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCceEEEEec--cCCCeEEEEEccCCCEEE-Eee
Q 004214 366 QPMNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQDRTACVWRLPDLVSVVTFRG--HKRGIWSVEFSPVDQVVI-TAS 441 (768)
Q Consensus 366 ~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~v~~v~~s~~~~~l~-t~~ 441 (768)
...... .........++++| +|.++++-..++.|+.++..++.....+.. ....-..++|+|+++.|+ +-.
T Consensus 218 ----~~~~~~-~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~ 292 (433)
T 4hw6_A 218 ----FTERLS-LCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYN 292 (433)
T ss_dssp ----TCCEEE-EEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEET
T ss_pred ----eecccc-ccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeC
Confidence 000011 11334567789999 677666666778899999887765332221 122234699999998554 445
Q ss_pred CCCcEEEEeCC--CCce--eEEeecC---------------CCcEEEEEE---------EeCCCEEEEEeCCCcEEEEEC
Q 004214 442 GDKTIKIWSIS--DGSC--LKTFEGH---------------TSSVLRASF---------LTRGAQIVSCGADGLVKLWTV 493 (768)
Q Consensus 442 ~d~~i~iwd~~--~~~~--~~~~~~~---------------~~~v~~~~~---------s~~~~~l~s~~~dg~i~iwd~ 493 (768)
..+.|+.++.. ++.. ...+.+. -.....+++ .++|++.++-...+.|+.++.
T Consensus 293 ~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~ 372 (433)
T 4hw6_A 293 GKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP 372 (433)
T ss_dssp TTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT
T ss_pred CCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC
Confidence 56889998865 2321 1222221 123567888 566666666556778999985
Q ss_pred CCCeEEEEeccC------------------CCcEEEEEEc-CCCCEEEEEeCCCcEEEEEcC
Q 004214 494 RTGECIATYDKH------------------EDKIWALAVG-KKTEMFATGGSDALVNLWHDS 536 (768)
Q Consensus 494 ~~~~~~~~~~~~------------------~~~v~~l~~s-~~~~~l~s~~~dg~v~vw~~~ 536 (768)
+|... ++.+. -.....|+++ ++|.++++-..++.|+.++++
T Consensus 373 -~G~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 373 -EGRVT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp -TSEEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred -CCCEE-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 56443 33221 1236789999 677777776677778877654
No 288
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.10 E-value=8.8e-05 Score=82.89 Aligned_cols=236 Identities=11% Similarity=0.054 Sum_probs=131.2
Q ss_pred eecCCCEEEEEEeCCC-----------eEEEEeCCCceEEEe--e-ecccCcEEEEEEecCCCcEEEEEe-CCCeEEEEe
Q 004214 292 ALSSGKILIVTGSKDN-----------SVRLWDSESRCCVGV--G-TGHMGAVGAVAFSKKLQNFLVSGS-SDHTIKVWS 356 (768)
Q Consensus 292 ~~~~~~~~l~~~~~dg-----------~i~iwd~~~~~~~~~--~-~~~~~~v~~~~~~~~~~~~l~s~~-~dg~i~iwd 356 (768)
+.+.++.+++.|+.++ .+.+||..+++.... + ..+.....++++..++. +++.|+ .+..+.+||
T Consensus 193 v~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~-lyv~GG~~~~~v~~yd 271 (656)
T 1k3i_A 193 IEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQ-IVVTGGNDAKKTSLYD 271 (656)
T ss_dssp EETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSC-EEEECSSSTTCEEEEE
T ss_pred EEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCC-EEEeCCCCCCceEEec
Confidence 4453455577776542 588999987654322 2 12333334567777765 777777 456899999
Q ss_pred CCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEe-CC-----CcEEEEeCCCCceEEEE----eccCCCeE
Q 004214 357 FDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGS-QD-----RTACVWRLPDLVSVVTF----RGHKRGIW 426 (768)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~d-----g~i~i~d~~~~~~~~~~----~~~~~~v~ 426 (768)
..... ....... .....-.++++.+++++++.|+ .+ ..+.+||..+.+-...- ......-.
T Consensus 272 ~~t~~--------W~~~~~~-~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~ 342 (656)
T 1k3i_A 272 SSSDS--------WIPGPDM-QVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADK 342 (656)
T ss_dssp GGGTE--------EEECCCC-SSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCT
T ss_pred CcCCc--------eeECCCC-CccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccc
Confidence 76431 1111000 0111123456667999999998 44 46999999876532210 00000000
Q ss_pred EEEEccCCCEEEEeeCC---------CcEEEEeCCCCceeEEeecCC---------CcEEEEEEEe-CCCEEEEEeCCC-
Q 004214 427 SVEFSPVDQVVITASGD---------KTIKIWSISDGSCLKTFEGHT---------SSVLRASFLT-RGAQIVSCGADG- 486 (768)
Q Consensus 427 ~v~~s~~~~~l~t~~~d---------~~i~iwd~~~~~~~~~~~~~~---------~~v~~~~~s~-~~~~l~s~~~dg- 486 (768)
...+..++..++.|+.+ ..+..||..+.........+. ..-.++.|.. +++.++.|+.++
T Consensus 343 ~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~ 422 (656)
T 1k3i_A 343 QGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDY 422 (656)
T ss_dssp TGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSS
T ss_pred cceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCC
Confidence 01122344554555443 457788887765443332221 1223444543 677778887543
Q ss_pred ----------cEEEEECCCCeEEEEe--ccCCCcE-EEEEEcCCCCEEEEEeCC-----------CcEEEEEcCC
Q 004214 487 ----------LVKLWTVRTGECIATY--DKHEDKI-WALAVGKKTEMFATGGSD-----------ALVNLWHDST 537 (768)
Q Consensus 487 ----------~i~iwd~~~~~~~~~~--~~~~~~v-~~l~~s~~~~~l~s~~~d-----------g~v~vw~~~~ 537 (768)
.|.+||..+....... ..+.... .+++..|+++.++.||.+ ..+.+||..+
T Consensus 423 ~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t 497 (656)
T 1k3i_A 423 QDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQ 497 (656)
T ss_dssp SSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGG
T ss_pred CCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCC
Confidence 6788888877655443 2233332 345667899999999864 4578888754
No 289
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.07 E-value=0.0078 Score=67.62 Aligned_cols=238 Identities=11% Similarity=-0.029 Sum_probs=145.8
Q ss_pred eEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCc----eeeeeeeC
Q 004214 205 LLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSM----SCSYVLAG 280 (768)
Q Consensus 205 l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~----~~~~~~~~ 280 (768)
++..+....|+..++..... ..+......+..++|...++.++++-...+.|+.+++... .....+..
T Consensus 397 ~Ll~an~~~Ir~i~l~~~~~--------~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~ 468 (791)
T 3m0c_C 397 YLFFTNRHEVRKMTLDRSEY--------TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR 468 (791)
T ss_dssp EEEEECBSSEEEECTTSCCC--------EEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECS
T ss_pred ccccccccceeEeeccCCcc--------eeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEec
Confidence 44555556666665543211 1122234567788888766666677677788988888753 22333332
Q ss_pred CccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCC-CeEEEEeCCC
Q 004214 281 HSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSD-HTIKVWSFDG 359 (768)
Q Consensus 281 ~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-g~i~iwd~~~ 359 (768)
.......|+ +...++.++++-...+.|.+.++........+.........|++.|.+..++++-... +.|...++..
T Consensus 469 ~l~~P~GLA--vD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG 546 (791)
T 3m0c_C 469 DIQAPDGLA--VDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG 546 (791)
T ss_dssp SCSCCCEEE--EETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred CCCCcceee--eeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCC
Confidence 334455565 5556667677777889999999987655555554555688999999866555554333 7788888864
Q ss_pred CCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEe-CCCcEEEEeCCCCceEEEEecc--CCCeEEEEEccCCCE
Q 004214 360 LSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGS-QDRTACVWRLPDLVSVVTFRGH--KRGIWSVEFSPVDQV 436 (768)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~--~~~v~~v~~s~~~~~ 436 (768)
.. ........-...+.|++++.+..|+.+. ..+.|..+++........+... -....+|++.. +.+
T Consensus 547 ~~----------~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~l 615 (791)
T 3m0c_C 547 VD----------IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKV 615 (791)
T ss_dssp CC----------EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEE
T ss_pred Cc----------eEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeC-CEE
Confidence 31 1112222335688999998766666654 4567999998655444444332 22345666643 345
Q ss_pred EEEeeCCCcEEEEeCCCCceeEEeecC
Q 004214 437 VITASGDKTIKIWSISDGSCLKTFEGH 463 (768)
Q Consensus 437 l~t~~~d~~i~iwd~~~~~~~~~~~~~ 463 (768)
+++-...+.|...|..+|+.+..+...
T Consensus 616 YwtD~~~~~I~~~dk~tG~~~~~l~~~ 642 (791)
T 3m0c_C 616 FWTDIINEAIFSANRLTGSDVNLLAEN 642 (791)
T ss_dssp EEEETTTTEEEEEETTTCCCCEEEECS
T ss_pred EEEECCCCEEEEEeCCCCcceEEeecC
Confidence 555556788888888888777666533
No 290
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=98.07 E-value=0.032 Score=63.44 Aligned_cols=465 Identities=10% Similarity=0.016 Sum_probs=237.0
Q ss_pred cEEEEECCCCEEEEEEE-----cCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEe-cCc----cceeEEE
Q 004214 11 KVLVWDVDGGFCTHYFK-----GHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATL-DKH----FSRVTSM 80 (768)
Q Consensus 11 ~i~vwd~~~~~~~~~l~-----gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l-~~h----~~~V~~l 80 (768)
-|..+|..++... .+. -....|.++...++|. |..|+.+| |..+|..+++..... ... ...|.++
T Consensus 122 Gl~~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g~---lWigt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i 196 (758)
T 3ott_A 122 GLYTYQLQSRKLT-SFDTRRNGLPNNTIYSIIRTKDNQ---IYVGTYNG-LCRYIPSNGKFEGIPLPVHSSQSNLFVNSL 196 (758)
T ss_dssp EEEEEETTTCCEE-EECHHHHCCSCSCEEEEEECTTCC---EEEEETTE-EEEEETTTTEEEEECCCCCTTCSSCCEEEE
T ss_pred cceeEeCCCCeEE-EeccCCCCcCCCeEEEEEEcCCCC---EEEEeCCC-HhhCccCCCceEEecCCCccccccceeEEE
Confidence 5777888776643 331 1235688888877765 33455555 778898776543221 111 2248888
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCeeeeeee-cceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCC
Q 004214 81 AITSDGSTLISAGRDKVVNLWDLRDYSCKLTVP-TYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGER 159 (768)
Q Consensus 81 ~fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (768)
...+++..|..+.. +-+..+|..+++...... ....+.++.....+ .+..++..
T Consensus 197 ~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g------------------------~lWigT~~ 251 (758)
T 3ott_A 197 LEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNG------------------------DLLAGTDN 251 (758)
T ss_dssp EEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTC------------------------CEEEEETT
T ss_pred EEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCC------------------------CEEEEeCC
Confidence 88887776555554 458889987765432111 12234445444444 23344444
Q ss_pred cEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeee--cc
Q 004214 160 GIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRL--VG 237 (768)
Q Consensus 160 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~--~~ 237 (768)
-+.+++..++.+........ ....-....+.++. ......+.+++..| +.++.... . ......... ..
T Consensus 252 -Gl~~~~~~~~~~~~~~~~~~---~~~~l~~~~i~~i~-~D~~g~lWiGT~~G-l~~~~~~~-~---~~~~~~~~~~~~~ 321 (758)
T 3ott_A 252 -GLYVYHNDTTPLQHIIHDSR---NIQSLTNNIIWNIF-ADQEHNIWLGTDYG-ISLSRYNS-A---LQFIPISQITGTG 321 (758)
T ss_dssp -EEEEECCTTSCCEEECCCTT---CTTSCSCSCEEEEE-ECTTCCEEEEESSS-EEEECCCC-----CEEEEHHHHSCSC
T ss_pred -ceeEEecCCCcEEEEEcCCC---CcCcCCcCeEEEEE-EcCCCCEEEEeCCc-ccccccCC-c---eeEEecccCCCCC
Confidence 47778776653321111000 00001112233333 33345566677665 44432211 0 111000000 01
Q ss_pred cCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCcee--eeeee-------CCccceEEEeeeeecCCCEEEEEEeCCCe
Q 004214 238 YNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSC--SYVLA-------GHSEIVLCLDTCALSSGKILIVTGSKDNS 308 (768)
Q Consensus 238 ~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~--~~~~~-------~~~~~v~~l~~~~~~~~~~~l~~~~~dg~ 308 (768)
....|.++.. +....+.+|+.. -+..++..++.. ...+. .....|.++. ...++ . |..|+ ++-
T Consensus 322 ~~~~v~~i~~--D~~g~lWiGt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~--~d~~g-~-lWigt-~~G 393 (758)
T 3ott_A 322 DGNQFYSLFR--DSKGFYWFGGAN-GLIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIY--EDKEQ-Q-LWIAT-DGS 393 (758)
T ss_dssp CCCBEEEEEE--CTTCCEEEEETT-EEEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEE--ECTTS-C-EEEEE-TTE
T ss_pred CCceEEEEEE--cCCCCEEEeeCC-cceeecccccccceeEEeccCCcCCCCCCCceEEEE--ECCCC-C-EEEEe-CCc
Confidence 1234555554 344456666764 466676654321 11111 1123577764 33444 3 55566 457
Q ss_pred EEEEeCCCceEEEeee-c-----ccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEe---e-c
Q 004214 309 VRLWDSESRCCVGVGT-G-----HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVV---A-A 378 (768)
Q Consensus 309 i~iwd~~~~~~~~~~~-~-----~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~---~-~ 378 (768)
+..||..+++...... . ....|.++...+++ .|..|+..+-+..++.......... ........ . .
T Consensus 394 L~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g--~lWigT~~~Gl~~~~~~~~~~~~~~--~~~~~~~~~~~~~l 469 (758)
T 3ott_A 394 INRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAG--QLWISTCLGGIFVVDKHKLMQSTSG--QYIAEQNYSVHNGL 469 (758)
T ss_dssp EEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTS--EEEEEESSSCEEEEEHHHHHHCCSS--EEECSEEECGGGTC
T ss_pred HhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCC--CEEEEECCCceEEEccccccccCCc--ceeccccccccccc
Confidence 9999998876544321 1 23457888777664 3666777666788874310000000 00000000 0 1
Q ss_pred cCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEec---cCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCc
Q 004214 379 HGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG---HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGS 455 (768)
Q Consensus 379 ~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~ 455 (768)
....|.++...++|.+.+.++..+-+..+|..+++....... ....+.++....+|.+.+.. ..| +..||..++.
T Consensus 470 ~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWigt-~~G-l~~~~~~~~~ 547 (758)
T 3ott_A 470 SGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVGF-HGG-VMRINPKDES 547 (758)
T ss_dssp SCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEEE-TTE-EEEECC--CC
T ss_pred ccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEEe-cCc-eEEEecCCCc
Confidence 123588999999998776444445688899877654432111 12467888888888876654 444 8888876654
Q ss_pred eeEE-eec-CCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEc-CCCCEEEEEeCCCcEEE
Q 004214 456 CLKT-FEG-HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVG-KKTEMFATGGSDALVNL 532 (768)
Q Consensus 456 ~~~~-~~~-~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s-~~~~~l~s~~~dg~v~v 532 (768)
.... ..+ ....|.++.. .+| .|..++..| |..+|..+.+... +......+....+. ++| .|..|+.+|.+.
T Consensus 548 ~~~~~~~gl~~~~i~~i~~-~~g-~lWi~t~~G-l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~G-~l~fG~~~Gl~~- 621 (758)
T 3ott_A 548 QQSISFGSFSNNEILSMTC-VKN-SIWVSTTNG-LWIIDRKTMDARQ-QNMTNKRFTSLLFDPKED-CVYLGGADGFGI- 621 (758)
T ss_dssp CCBCCCCC---CCEEEEEE-ETT-EEEEEESSC-EEEEETTTCCEEE-C--CCCCCSEEEEETTTT-EEEEECBSEEEE-
T ss_pred eEEecccCCCccceEEEEE-CCC-CEEEECCCC-eEEEcCCCceeEE-ecCCCCceeeeEEECCCC-cEEEecCCceEE-
Confidence 3211 111 1345777765 355 455555666 7778888765432 22122223334443 455 566677788544
Q ss_pred EEc
Q 004214 533 WHD 535 (768)
Q Consensus 533 w~~ 535 (768)
++.
T Consensus 622 f~p 624 (758)
T 3ott_A 622 SHS 624 (758)
T ss_dssp EEC
T ss_pred ECh
Confidence 444
No 291
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.04 E-value=0.012 Score=59.07 Aligned_cols=268 Identities=11% Similarity=0.049 Sum_probs=142.7
Q ss_pred CceeEEEEecCCCCEEEEEeCCCcEEEEECCCce---eeee-eeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCC
Q 004214 240 EEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMS---CSYV-LAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSE 315 (768)
Q Consensus 240 ~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~---~~~~-~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~ 315 (768)
..+.++.|.+ .+..+++ +..|.| +.....++ .+.. .......+.++. +. + +..++ ++..|.|.. ...
T Consensus 36 ~~~~~v~~~~-~~~~~~~-G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~--~~-~-~~~~~-~g~~g~i~~-S~D 106 (327)
T 2xbg_A 36 ATILDMSFID-RHHGWLV-GVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVS--FQ-G-NEGWI-VGEPPIMLH-TTD 106 (327)
T ss_dssp SCEEEEEESS-SSCEEEE-ETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEE--EE-T-TEEEE-EEETTEEEE-ESS
T ss_pred CcEEEEEECC-CCcEEEE-cCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEE--ec-C-CeEEE-EECCCeEEE-ECC
Confidence 3577777753 3344554 445654 33333332 2211 111234567775 43 3 34344 445665544 223
Q ss_pred CceEEEeee---cccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCC
Q 004214 316 SRCCVGVGT---GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND 392 (768)
Q Consensus 316 ~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 392 (768)
.++.-.... .+.+.+..+.+.+++. +++ ++.+|.|.. ..+.+. ... .........+.++++.|++
T Consensus 107 gG~tW~~~~~~~~~~~~~~~i~~~~~~~-~~~-~~~~g~v~~-S~DgG~-------tW~--~~~~~~~~~~~~~~~~~~~ 174 (327)
T 2xbg_A 107 GGQSWSQIPLDPKLPGSPRLIKALGNGS-AEM-ITNVGAIYR-TKDSGK-------NWQ--ALVQEAIGVMRNLNRSPSG 174 (327)
T ss_dssp TTSSCEECCCCTTCSSCEEEEEEEETTE-EEE-EETTCCEEE-ESSTTS-------SEE--EEECSCCCCEEEEEECTTS
T ss_pred CCCCceECccccCCCCCeEEEEEECCCC-EEE-EeCCccEEE-EcCCCC-------CCE--EeecCCCcceEEEEEcCCC
Confidence 233222211 2335577787776643 444 445664422 111111 111 1112334568899999998
Q ss_pred CEEEEEeCCCcEEE-EeC--CCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEee-c---CCC
Q 004214 393 SLVCTGSQDRTACV-WRL--PDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFE-G---HTS 465 (768)
Q Consensus 393 ~~l~~~~~dg~i~i-~d~--~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~-~---~~~ 465 (768)
.+++++.. |.+.. .|- .+.+.+. ......+..+.+.+++++++++ .+|.+++.+...|+.-..+. + +..
T Consensus 175 ~~~~~g~~-G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~~~-~~G~~~~s~~D~G~tW~~~~~~~~~~~~ 250 (327)
T 2xbg_A 175 EYVAVSSR-GSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWMIV-NGGKIAFSDPDNSENWGELLSPLRRNSV 250 (327)
T ss_dssp CEEEEETT-SSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEEEEE-TTTEEEEEETTEEEEECCCBCTTSSCCS
T ss_pred cEEEEECC-CcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEEEEe-CCceEEEecCCCCCeeEeccCCcccCCc
Confidence 88877654 44443 342 2233332 2345678899999988766554 56888776433233322222 1 223
Q ss_pred cEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEecc---CCCcEEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 004214 466 SVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDK---HEDKIWALAVGKKTEMFATGGSDALVNLWHD 535 (768)
Q Consensus 466 ~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~ 535 (768)
.+..+.+.+++..++++. +|.| ++..+.|+.-..+.. +...+.++.|.+++ .+++++.+|.|.-++.
T Consensus 251 ~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 251 GFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILLRYVT 320 (327)
T ss_dssp CEEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEEEECC
T ss_pred ceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEEEEcC
Confidence 588899988877666554 6766 455555655444432 34567888887554 4667778897766553
No 292
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.03 E-value=0.00055 Score=77.56 Aligned_cols=197 Identities=12% Similarity=0.124 Sum_probs=108.5
Q ss_pred eEEEeeeee-cCCCEEEEEEeCCC----eEEEEeCCCc-eEEEeeecccCcEEEEEEecCCCcEEEEEeCC----CeEEE
Q 004214 285 VLCLDTCAL-SSGKILIVTGSKDN----SVRLWDSESR-CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSD----HTIKV 354 (768)
Q Consensus 285 v~~l~~~~~-~~~~~~l~~~~~dg----~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d----g~i~i 354 (768)
+.... ++ ++++.+.++...+| .|+++|+.++ +.+... -......++|+|+++.++++.... ..|..
T Consensus 176 ~~~~~--~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~--~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 176 VMEVK--PAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADK--VSGTNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEE--ECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCC--EEEECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EeeeE--ecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcc--ccCceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 44444 77 78877555555444 4999999988 632110 011134678999988655554322 25777
Q ss_pred EeCCCCCCCCccccccceeeEee-ccCCCeEEEEEccCCCEEEEEeC---CCcEEEEeCCCCc-eE--EEE-eccCCCeE
Q 004214 355 WSFDGLSDDAEQPMNLKAKAVVA-AHGKDINSLAVAPNDSLVCTGSQ---DRTACVWRLPDLV-SV--VTF-RGHKRGIW 426 (768)
Q Consensus 355 wd~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~---dg~i~i~d~~~~~-~~--~~~-~~~~~~v~ 426 (768)
+++.+... ....... ........+.|+|||++|+..+. ...|.++|+.++. .. ..+ ........
T Consensus 252 ~~lgt~~~--------~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~ 323 (751)
T 2xe4_A 252 HVMGKLQS--------EDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRY 323 (751)
T ss_dssp EETTSCGG--------GCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCE
T ss_pred EECCCCch--------hcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceE
Confidence 77754311 1111211 22234567899999998887663 3468888987752 22 333 33445556
Q ss_pred EEEEccCCCEEEEeeCC----CcEEEEeCCCCceeEE-eecCCCcEEEEEEEeCCCEE-EEEeCCCc--EEEEEC
Q 004214 427 SVEFSPVDQVVITASGD----KTIKIWSISDGSCLKT-FEGHTSSVLRASFLTRGAQI-VSCGADGL--VKLWTV 493 (768)
Q Consensus 427 ~v~~s~~~~~l~t~~~d----~~i~iwd~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l-~s~~~dg~--i~iwd~ 493 (768)
++.|+..+.+++....+ ..|..+|+.++..... +..+...+.--.+++.+..| ++...+|. |.++++
T Consensus 324 s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 324 DVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRSNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp EEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEECSSEEEEEEEETTEEEEEEEEC
T ss_pred EEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEECCEEEEEEEeCCEEEEEEEec
Confidence 66665544455554443 3577777765322223 33344433223344445554 55666775 555665
No 293
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.03 E-value=0.002 Score=63.57 Aligned_cols=199 Identities=11% Similarity=0.190 Sum_probs=127.4
Q ss_pred EEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecC----CCc--EEEEEe-C--CCeEEEEeCCCCCCCCccccc
Q 004214 299 LIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKK----LQN--FLVSGS-S--DHTIKVWSFDGLSDDAEQPMN 369 (768)
Q Consensus 299 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~----~~~--~l~s~~-~--dg~i~iwd~~~~~~~~~~~~~ 369 (768)
+++...+.+-+.+||+ +++.+..+.. +.+..+..-|. ++. ++++.. . +++|.+|+++...........
T Consensus 42 ~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~ 118 (355)
T 3amr_A 42 KLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTD 118 (355)
T ss_dssp EEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSC
T ss_pred EEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeeccc
Confidence 4666677889999999 7777777653 56777776663 111 233333 3 588999988532110000000
Q ss_pred cceeeEeeccCCCeEEEEE--ccC-CC-EEEEEeCCCcEEEEeCC-------CCceEEEEeccCCCeEEEEEccCCCEEE
Q 004214 370 LKAKAVVAAHGKDINSLAV--APN-DS-LVCTGSQDRTACVWRLP-------DLVSVVTFRGHKRGIWSVEFSPVDQVVI 438 (768)
Q Consensus 370 ~~~~~~~~~~~~~i~~~~~--s~~-~~-~l~~~~~dg~i~i~d~~-------~~~~~~~~~~~~~~v~~v~~s~~~~~l~ 438 (768)
... . .......+..+++ +|. +. ++++...+|.+..|++. +.+.++++.. ...+..+...+....|+
T Consensus 119 ~~~-p-v~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~Ly 195 (355)
T 3amr_A 119 PDH-P-IATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRLY 195 (355)
T ss_dssp TTS-C-EECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEEE
T ss_pred ccc-C-cCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeEE
Confidence 000 0 0011155666777 774 44 67888889999999882 3355666664 45788899999889999
Q ss_pred EeeCCCcEEEEeCC-----CCceeEEee-cC-CCcEEEEEEE--eCCC-EEEEEe-CCCcEEEEECC-CCeEEEEec
Q 004214 439 TASGDKTIKIWSIS-----DGSCLKTFE-GH-TSSVLRASFL--TRGA-QIVSCG-ADGLVKLWTVR-TGECIATYD 503 (768)
Q Consensus 439 t~~~d~~i~iwd~~-----~~~~~~~~~-~~-~~~v~~~~~s--~~~~-~l~s~~-~dg~i~iwd~~-~~~~~~~~~ 503 (768)
.+-++.-|..|+.. +++.+..+. ++ ...+..+++- ++++ ||++++ .+.++.+||.. +.+.+..|.
T Consensus 196 v~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 196 IAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFR 272 (355)
T ss_dssp EEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred EecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEE
Confidence 99998777777754 345555553 22 2368888884 4555 666666 57799999997 677777774
No 294
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.02 E-value=0.00021 Score=80.95 Aligned_cols=191 Identities=10% Similarity=0.059 Sum_probs=111.9
Q ss_pred cEEEEEEe-cCCCcEEEEEeCCC----eEEEEeCCCC-CCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCC-
Q 004214 329 AVGAVAFS-KKLQNFLVSGSSDH----TIKVWSFDGL-SDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQD- 401 (768)
Q Consensus 329 ~v~~~~~~-~~~~~~l~s~~~dg----~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d- 401 (768)
.+...+|+ |+|+.+.++...+| .|+++|+.++ .... . . .. .....++|+|||+.|+....+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~-----~-~---~~---~~~~~~~WspDg~~l~y~~~d~ 242 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA-----D-K---VS---GTNGEIVWGPDHTSLFYVTKDE 242 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCC-----C-C---EE---EECSCCEECSSTTEEEEEEECT
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCC-----c-c---cc---CceeeEEEecCCCEEEEEEECC
Confidence 57788999 99886555555444 4999999865 3110 0 0 00 113468899999888877765
Q ss_pred ----CcEEEEeCCCCce--EEEEec-cCCCeEEEEEccCCCEEEEee---CCCcEEEEeCCCCc-ee--EEee-cCCCcE
Q 004214 402 ----RTACVWRLPDLVS--VVTFRG-HKRGIWSVEFSPVDQVVITAS---GDKTIKIWSISDGS-CL--KTFE-GHTSSV 467 (768)
Q Consensus 402 ----g~i~i~d~~~~~~--~~~~~~-~~~~v~~v~~s~~~~~l~t~~---~d~~i~iwd~~~~~-~~--~~~~-~~~~~v 467 (768)
..|+++++.++.. ...+.. .......+.|||||++|+..+ ....|.++|+.++. .. ..+. ......
T Consensus 243 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~ 322 (751)
T 2xe4_A 243 TLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVR 322 (751)
T ss_dssp TCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCC
T ss_pred CCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCce
Confidence 2588888877642 233332 233466889999999888665 34568899998762 22 3333 334444
Q ss_pred EEEEEEeCCCEE-EEEeCC--C--cEEEEECCCCeEEEE-eccCCC--cEEEEEEcCCCCEEEEEeCCCcEEEE
Q 004214 468 LRASFLTRGAQI-VSCGAD--G--LVKLWTVRTGECIAT-YDKHED--KIWALAVGKKTEMFATGGSDALVNLW 533 (768)
Q Consensus 468 ~~~~~s~~~~~l-~s~~~d--g--~i~iwd~~~~~~~~~-~~~~~~--~v~~l~~s~~~~~l~s~~~dg~v~vw 533 (768)
.++.|+. |..| +.+..+ + .|..+++.++..... +-.+.. .+..+.+. .+..+++...+|...+|
T Consensus 323 ~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~ 394 (751)
T 2xe4_A 323 YDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIW 394 (751)
T ss_dssp EEEEEET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEE
T ss_pred EEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEE
Confidence 4554443 5554 444443 2 566677765322122 222333 34555554 33455566677765444
No 295
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.00 E-value=0.0035 Score=65.56 Aligned_cols=248 Identities=11% Similarity=0.057 Sum_probs=142.6
Q ss_pred eEEEeeeeec-CCCEEEEEEeCCCeEEEEeCCCceEEEeeecc---cCcEEEEEE-------ecCCCcEEEEEeCCC---
Q 004214 285 VLCLDTCALS-SGKILIVTGSKDNSVRLWDSESRCCVGVGTGH---MGAVGAVAF-------SKKLQNFLVSGSSDH--- 350 (768)
Q Consensus 285 v~~l~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~v~~~~~-------~~~~~~~l~s~~~dg--- 350 (768)
...|+ +.| +++.++++....+.|++.|..++......... ......++| ++++..++++...++
T Consensus 141 p~~la--~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~ 218 (496)
T 3kya_A 141 NGRLA--FDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGD 218 (496)
T ss_dssp EEEEE--EETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGG
T ss_pred CCEEE--EccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcc
Confidence 34444 555 34554555555578999999988776655432 235889999 999874444444432
Q ss_pred ---eEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCC-------CCce-----
Q 004214 351 ---TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQDRTACVWRLP-------DLVS----- 414 (768)
Q Consensus 351 ---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~-------~~~~----- 414 (768)
.|.+++......... .... ..... ......++++| ++.++++-..++.|..+|+. ++..
T Consensus 219 ~~~~V~~i~r~~~G~~~~-~~~~---~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~ 293 (496)
T 3kya_A 219 ESPSVYIIKRNADGTFDD-RSDI---QLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIV 293 (496)
T ss_dssp GEEEEEEEECCTTSCCST-TSCE---EEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBG
T ss_pred cCceEEEEecCCCCceee-cccc---eeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccc
Confidence 255565332111000 0000 11111 22456788999 45556666677889999987 4543
Q ss_pred ------EEE-Ee-ccCCCeEEEEEccCCCEEEEe-eCCCcEEEEeCC--CCce--eEEeecC---C------------Cc
Q 004214 415 ------VVT-FR-GHKRGIWSVEFSPVDQVVITA-SGDKTIKIWSIS--DGSC--LKTFEGH---T------------SS 466 (768)
Q Consensus 415 ------~~~-~~-~~~~~v~~v~~s~~~~~l~t~-~~d~~i~iwd~~--~~~~--~~~~~~~---~------------~~ 466 (768)
... +. +.......++|+|+|++|+.+ +....|+.++.. .+.. ...+.+. . ..
T Consensus 294 ~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~ 373 (496)
T 3kya_A 294 KNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNN 373 (496)
T ss_dssp GGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSS
T ss_pred cccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCC
Confidence 112 11 223446789999999954444 566788886643 3321 1233221 0 12
Q ss_pred EE-EEEEE-------eCCCEEEEEeCCCcEEEEECCCCeEEEEeccC------------------------CCcEEEEEE
Q 004214 467 VL-RASFL-------TRGAQIVSCGADGLVKLWTVRTGECIATYDKH------------------------EDKIWALAV 514 (768)
Q Consensus 467 v~-~~~~s-------~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------------------------~~~v~~l~~ 514 (768)
.. .++.. ++|.+.++=.....|+.++ .+|. +.++-+. -.....|++
T Consensus 374 P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIav 451 (496)
T 3kya_A 374 PCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVY 451 (496)
T ss_dssp EEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEE
T ss_pred CeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEE
Confidence 34 34443 3455555555677899998 4664 4444221 123678999
Q ss_pred cCC-CCEEEEEeCCCcEEEEEcCCHHHH
Q 004214 515 GKK-TEMFATGGSDALVNLWHDSTAAER 541 (768)
Q Consensus 515 s~~-~~~l~s~~~dg~v~vw~~~~~~~~ 541 (768)
+++ +.++++=..+..|+.+++......
T Consensus 452 d~~~g~lyVaD~~N~rIrki~~~~~~~~ 479 (496)
T 3kya_A 452 DDVKEMFYVHDQVGHTIRTISMEQEENV 479 (496)
T ss_dssp ETTTTEEEEEETTTTEEEEEEECCCC--
T ss_pred ECCCCEEEEEeCCCCEEEEEECCCCccc
Confidence 997 777777777888999998765443
No 296
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.97 E-value=0.003 Score=66.09 Aligned_cols=238 Identities=9% Similarity=0.005 Sum_probs=131.9
Q ss_pred ceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCC----eEEEEeCCC
Q 004214 241 EILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDN----SVRLWDSES 316 (768)
Q Consensus 241 ~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg----~i~iwd~~~ 316 (768)
....+++.+.++..|.++...+.|+.+|+.++....... .......++ +.++++.++++...++ .+..++...
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia--~d~~G~~lyvad~~~~~~~~~v~~~~~~g 214 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTIC--WTHEADSMIITNDQNNNDRPNNYILTRES 214 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEE--ECTTSSEEEEEECCSCTTSEEEEEEEGGG
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEE--EeCCCCEEEEEeCCCCcccceEEEEeCCC
Confidence 446677775223445555544889999998876554443 344456665 6677776555554332 233344322
Q ss_pred ceE-EEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEE
Q 004214 317 RCC-VGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLV 395 (768)
Q Consensus 317 ~~~-~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 395 (768)
... ...+. .......++++|++..++++-..++.|..++..... .. .............++|+|+|++|
T Consensus 215 ~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~--------~~-~~~~~~~~~~P~gia~~pdG~~l 284 (430)
T 3tc9_A 215 GFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQE--------TT-PLFTIQDSGWEFHIQFHPSGNYA 284 (430)
T ss_dssp TSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTE--------EE-EEEECSSSSCCEEEEECTTSSEE
T ss_pred ceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCc--------EE-EEEEcCCCCcceeEEEcCCCCEE
Confidence 110 11111 123346778999545566776678899999986421 00 11111122346889999999955
Q ss_pred E-EEeCCCcEEEEeCCC--Cce--EEEEecc---------------CCCeE-EEEEc--------cCCCEEEEeeCCCcE
Q 004214 396 C-TGSQDRTACVWRLPD--LVS--VVTFRGH---------------KRGIW-SVEFS--------PVDQVVITASGDKTI 446 (768)
Q Consensus 396 ~-~~~~dg~i~i~d~~~--~~~--~~~~~~~---------------~~~v~-~v~~s--------~~~~~l~t~~~d~~i 446 (768)
. +-...+.|..++... +.. ...+.+. -.... .++.. ++|.+.++-...+.|
T Consensus 285 yv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I 364 (430)
T 3tc9_A 285 YIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCI 364 (430)
T ss_dssp EEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEE
T ss_pred EEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEE
Confidence 4 445677899987653 221 2222221 01122 45553 346666666667889
Q ss_pred EEEeCCCCceeEEeecC------------------CCcEEEEEEEeC-CCEEEEEeCCCcEEEEEC
Q 004214 447 KIWSISDGSCLKTFEGH------------------TSSVLRASFLTR-GAQIVSCGADGLVKLWTV 493 (768)
Q Consensus 447 ~iwd~~~~~~~~~~~~~------------------~~~v~~~~~s~~-~~~l~s~~~dg~i~iwd~ 493 (768)
+.++ .+|... ++.+. -.....+++.|+ +.++++-...+.|+.+++
T Consensus 365 ~~i~-~~G~v~-~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 428 (430)
T 3tc9_A 365 RILT-PQGRVT-TFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGY 428 (430)
T ss_dssp EEEC-TTSEEE-EEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred EEEC-CCCcEE-EEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEcc
Confidence 9888 456433 33221 124778899885 444444444567777664
No 297
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.93 E-value=0.056 Score=61.39 Aligned_cols=460 Identities=12% Similarity=0.047 Sum_probs=230.4
Q ss_pred CcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEec----CccceeEEEEEcCC
Q 004214 10 RKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLD----KHFSRVTSMAITSD 85 (768)
Q Consensus 10 g~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~----~h~~~V~~l~fs~d 85 (768)
.-+..||..+.............|.++.. .+| . |..|+.+ -+..+|..+++...... .....|.++...++
T Consensus 82 ~Gl~~yd~~~~~f~~~~~~~~~~i~~i~~-~~g-~--lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~ 156 (758)
T 3ott_A 82 NGILVYNYRADRYEQPETDFPTDVRTMAL-QGD-T--LWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKD 156 (758)
T ss_dssp TEEEEEETTTTEECCCSCCCCSCEEEEEE-ETT-E--EEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTT
T ss_pred CCeEEEeCCCCEEECcccCCCceEEEEEe-cCC-c--EEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCC
Confidence 34778888877533211112345777754 344 3 5555555 48889987765432211 12345888888888
Q ss_pred CCEEEEEeCCCeEEEEECCCCeeeee-eecc-----eeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCC
Q 004214 86 GSTLISAGRDKVVNLWDLRDYSCKLT-VPTY-----EMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGER 159 (768)
Q Consensus 86 ~~~L~s~~~dg~i~vWd~~~~~~~~~-~~~~-----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (768)
|...+ ++..| |..++..+++.... .+.. ..+.++.....+ ..+..+..
T Consensus 157 g~lWi-gt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~-----------------------~~lWigt~- 210 (758)
T 3ott_A 157 NQIYV-GTYNG-LCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTR-----------------------QCVWIGTE- 210 (758)
T ss_dssp CCEEE-EETTE-EEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTT-----------------------TEEEEEEE-
T ss_pred CCEEE-EeCCC-HhhCccCCCceEEecCCCccccccceeEEEEEECCC-----------------------CEEEEEEC-
Confidence 87555 44444 77888877653211 1100 012222222211 12333333
Q ss_pred cEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccC
Q 004214 160 GIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYN 239 (768)
Q Consensus 160 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (768)
+.+..++..++.+...... ....+..+.. .....+.+++ ++.+.+++..................-..
T Consensus 211 ~Gl~~~~~~~~~~~~~~~l----------~~~~i~~i~~-d~~g~lWigT-~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~ 278 (758)
T 3ott_A 211 GYLFQYFPSTGQIKQTEAF----------HNNSIKSLAL-DGNGDLLAGT-DNGLYVYHNDTTPLQHIIHDSRNIQSLTN 278 (758)
T ss_dssp EEEEEEETTTTEEEEEEEE----------EEEEEEEEEE-CTTCCEEEEE-TTEEEEECCTTSCCEEECCCTTCTTSCSC
T ss_pred CCCeEEcCCCCeEEeccCC----------CCCeEEEEEE-cCCCCEEEEe-CCceeEEecCCCcEEEEEcCCCCcCcCCc
Confidence 4577788776643221100 0112233322 3345566666 45677776544321100000000000122
Q ss_pred CceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeee-----CCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeC
Q 004214 240 EEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLA-----GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDS 314 (768)
Q Consensus 240 ~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~-----~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~ 314 (768)
..|.++... ....+.+|+..| +.++.....-...... .....|.++. ...++. |..|+.+| +..++.
T Consensus 279 ~~i~~i~~D--~~g~lWiGT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~--~D~~g~--lWiGt~~G-l~~~~~ 350 (758)
T 3ott_A 279 NIIWNIFAD--QEHNIWLGTDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLF--RDSKGF--YWFGGANG-LIRFTD 350 (758)
T ss_dssp SCEEEEEEC--TTCCEEEEESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEE--ECTTCC--EEEEETTE-EEEESC
T ss_pred CeEEEEEEc--CCCCEEEEeCCc-ccccccCCceeEEecccCCCCCCCceEEEEE--EcCCCC--EEEeeCCc-ceeecc
Confidence 346666543 344566777666 5544332111111110 1234567764 334443 55666554 666665
Q ss_pred CCce--EEEeee-------cccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEee----ccCC
Q 004214 315 ESRC--CVGVGT-------GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVA----AHGK 381 (768)
Q Consensus 315 ~~~~--~~~~~~-------~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~----~~~~ 381 (768)
.++. ....+. .....|.++...+++. |..|+ ++-+..|+..... ........ ....
T Consensus 351 ~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~--lWigt-~~GL~~~~~~~~~--------~~~~~~~~~~~~~~~~ 419 (758)
T 3ott_A 351 PAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQ--LWIAT-DGSINRYDYATRQ--------FIHYNIVDNTGTYNTN 419 (758)
T ss_dssp TTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSC--EEEEE-TTEEEEEETTTTE--------EEEEEEECCC--CBSS
T ss_pred cccccceeEEeccCCcCCCCCCCceEEEEECCCCC--EEEEe-CCcHhhcCcCCCc--------EEEeecCCCcCCCCCc
Confidence 5431 111111 1124588888877765 55566 4578888876431 11100000 0234
Q ss_pred CeEEEEEccCCCEEEEEeCCCcEEEEeCCCC-----ceE---EEEec----cCCCeEEEEEccCCCEEEEeeCCCcEEEE
Q 004214 382 DINSLAVAPNDSLVCTGSQDRTACVWRLPDL-----VSV---VTFRG----HKRGIWSVEFSPVDQVVITASGDKTIKIW 449 (768)
Q Consensus 382 ~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~-----~~~---~~~~~----~~~~v~~v~~s~~~~~l~t~~~d~~i~iw 449 (768)
.|.++...++|. |..|+..+-+.++|..+. ... ..+.. ....|.++...++|++.+.++..+-+..+
T Consensus 420 ~v~~i~~d~~g~-lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~ 498 (758)
T 3ott_A 420 WTYYIFEDTAGQ-LWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKI 498 (758)
T ss_dssp SEEEEEECTTSE-EEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEE
T ss_pred eEEEEEEcCCCC-EEEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEE
Confidence 688888877775 455676666888885421 111 11111 12358899999999877643334558889
Q ss_pred eCCCCceeEEeec---CCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEE-ecc-CCCcEEEEEEcCCCCEEEEE
Q 004214 450 SISDGSCLKTFEG---HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIAT-YDK-HEDKIWALAVGKKTEMFATG 524 (768)
Q Consensus 450 d~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~-~~~~v~~l~~s~~~~~l~s~ 524 (768)
|..+++....... ....+.++....+|...+. +..| +..|+..+++...- ..+ ....|.++... +|...+ +
T Consensus 499 d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWig-t~~G-l~~~~~~~~~~~~~~~~gl~~~~i~~i~~~-~g~lWi-~ 574 (758)
T 3ott_A 499 NPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVG-FHGG-VMRINPKDESQQSISFGSFSNNEILSMTCV-KNSIWV-S 574 (758)
T ss_dssp ETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEE-ETTE-EEEECC--CCCCBCCCCC---CCEEEEEEE-TTEEEE-E
T ss_pred eCCCCceEEecCCCcCCCcccceEEECCCCCEEEE-ecCc-eEEEecCCCceEEecccCCCccceEEEEEC-CCCEEE-E
Confidence 9877654432211 1245777777777776654 4455 78888766543211 111 23457777764 665554 4
Q ss_pred eCCCcEEEEEcCC
Q 004214 525 GSDALVNLWHDST 537 (768)
Q Consensus 525 ~~dg~v~vw~~~~ 537 (768)
+..| |..++..+
T Consensus 575 t~~G-l~~~~~~~ 586 (758)
T 3ott_A 575 TTNG-LWIIDRKT 586 (758)
T ss_dssp ESSC-EEEEETTT
T ss_pred CCCC-eEEEcCCC
Confidence 4566 56677654
No 298
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.88 E-value=5.2e-05 Score=84.70 Aligned_cols=240 Identities=10% Similarity=0.016 Sum_probs=136.6
Q ss_pred CCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCC----ceEEEeeecccCcEEEEEE
Q 004214 260 NIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES----RCCVGVGTGHMGAVGAVAF 335 (768)
Q Consensus 260 ~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~v~~~~~ 335 (768)
+...|+..++.+......+... ..+..++ +.+.++.++++-...+.|+.+++.. ......+.........+++
T Consensus 384 ~~~~I~~id~~~~~~~~~~~~~-~~p~gla--~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glav 460 (699)
T 1n7d_A 384 NRHEVRKMTLDRSEYTSLIPNL-RNVVALD--TEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAV 460 (699)
T ss_dssp CTTC-CEECTTSCCEECCSCCC-TTCCCCE--EETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEEC
T ss_pred CccceEEEeCCCCcceeeeccC-cceEEEc--cccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEE
Confidence 3467888888776655444332 2334555 5566666566656678899998875 2222222212223456788
Q ss_pred ecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeC-C-CcEEEEeCCCCc
Q 004214 336 SKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ-D-RTACVWRLPDLV 413 (768)
Q Consensus 336 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-d-g~i~i~d~~~~~ 413 (768)
.+.+.+++++-...+.|.++++.... ..............++++|.+..|+.+.. . +.|..+++....
T Consensus 461 D~~~g~LY~tD~~~~~I~v~d~dg~~----------~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~ 530 (699)
T 1n7d_A 461 DWIHSNIYWTDSVLGTVSVADTKGVK----------RKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD 530 (699)
T ss_dssp CCSSSBCEECCTTTSCEEEEBSSSCC----------EEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC
T ss_pred EeeCCcEEEEeccCCeEEEEecCCCc----------eEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCC
Confidence 76656666666677889999876421 11111112245678899996655555443 2 678887775432
Q ss_pred eEEEEeccCCCeEEEEEccCCC-EEEEeeCCCcEEEEeCCCCceeEEeec---CCCcEEEEEEEeCCCEEEEEeCCCcEE
Q 004214 414 SVVTFRGHKRGIWSVEFSPVDQ-VVITASGDKTIKIWSISDGSCLKTFEG---HTSSVLRASFLTRGAQIVSCGADGLVK 489 (768)
Q Consensus 414 ~~~~~~~~~~~v~~v~~s~~~~-~l~t~~~d~~i~iwd~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~s~~~dg~i~ 489 (768)
....+...-.....|+|+|++. +.++-+..+.|..+++.. ...+.+.. .......+++..+ ..+++....+.|.
T Consensus 531 ~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG-~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~ 608 (699)
T 1n7d_A 531 IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG-GNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIF 608 (699)
T ss_dssp CCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSS-SCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEE
T ss_pred eeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCC-CceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEE
Confidence 2222222233467899998755 445555667899999864 33333321 1122334555433 3444545567999
Q ss_pred EEECCCCeEEEEeccCCCcEEEEEE
Q 004214 490 LWTVRTGECIATYDKHEDKIWALAV 514 (768)
Q Consensus 490 iwd~~~~~~~~~~~~~~~~v~~l~~ 514 (768)
.++..+|+.+..+.......+.|++
T Consensus 609 ~~d~~~G~~~~~i~~~~~~P~~i~v 633 (699)
T 1n7d_A 609 SANRLTGSDVNLLAENLLSPEDMVL 633 (699)
T ss_dssp EEETTTEEEEECCCTTCSSCCCCCB
T ss_pred EEEccCCCceEEeecCCCCCcEEEE
Confidence 9999889888777543333444443
No 299
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.86 E-value=0.023 Score=54.76 Aligned_cols=260 Identities=12% Similarity=0.120 Sum_probs=164.6
Q ss_pred CcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCc
Q 004214 262 EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQN 341 (768)
Q Consensus 262 ~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 341 (768)
.+|.+.|+..+......+-..+ .++ ..|... .+|.-. ...+.++|+++.+.+..+.-.. .|.-=.|-.+.
T Consensus 49 ~~VvIiDl~n~~~~~Rrpi~Ad--sAI---MnP~~~-ViALra-g~~LQiFnletK~klks~~~~e-~VvfWkWis~~-- 118 (365)
T 2xzh_A 49 AQVVIIDMNDPSNPIRRPISAD--SAI---MNPASK-VIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLN-- 118 (365)
T ss_dssp EEEEEEETTSTTSCEEEECCCS--EEE---ECSSSS-EEEEEE-TTEEEEEETTTTEEEEEEECSS-CEEEEEECSSS--
T ss_pred CEEEEEECCCCCCccccccccc--eee---eCCCcc-EEEEec-CCeEEEechHHhhhhcceecCC-ccEEEEecCCC--
Confidence 4788899988665433222111 111 334444 355444 6889999999999988877654 55444554442
Q ss_pred EEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeecc----CCCeEEEEEccCCCEEEEEeC-------CCcEEEEeCC
Q 004214 342 FLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAH----GKDINSLAVAPNDSLVCTGSQ-------DRTACVWRLP 410 (768)
Q Consensus 342 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~----~~~i~~~~~s~~~~~l~~~~~-------dg~i~i~d~~ 410 (768)
.|+-.+ +..|.-|++.+.. .+...+..| ...|.....+++.++++..+- .|.+.+|..+
T Consensus 119 ~L~lVT-~taVyHWs~~~~s---------~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~e 188 (365)
T 2xzh_A 119 TVALVT-DNAVYHWSMEGES---------QPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD 188 (365)
T ss_dssp EEEEEE-SSEEEEEESSTTC---------CCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETT
T ss_pred eEEEEc-CCcEEEEcccCCC---------CCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeec
Confidence 343333 4579999997521 122222222 466778888888888776542 3678899876
Q ss_pred CCceEEEEeccCCCeEEEEEccC---CCEEEEeeC---CCcEEEEeCCCC---ce------eEEee---cCCCcEEEEEE
Q 004214 411 DLVSVVTFRGHKRGIWSVEFSPV---DQVVITASG---DKTIKIWSISDG---SC------LKTFE---GHTSSVLRASF 472 (768)
Q Consensus 411 ~~~~~~~~~~~~~~v~~v~~s~~---~~~l~t~~~---d~~i~iwd~~~~---~~------~~~~~---~~~~~v~~~~~ 472 (768)
.. ....+.||......+.+..+ .++++.+.. .+.++|-++... .+ +..+. ...+...++..
T Consensus 189 r~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqv 267 (365)
T 2xzh_A 189 RK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQI 267 (365)
T ss_dssp TT-EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEE
T ss_pred cc-ccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEe
Confidence 54 44557777554433332211 123333322 258899988432 11 11111 22455667888
Q ss_pred EeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCHHHHH
Q 004214 473 LTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAERE 542 (768)
Q Consensus 473 s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~ 542 (768)
++.-..++.-+.-|.|++||+.+|.++..-+-...+|..-+-+....-++.....|.|.--.++......
T Consensus 268 s~kygviyviTK~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~~ivp 337 (365)
T 2xzh_A 268 SEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENIIP 337 (365)
T ss_dssp ETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEEGGGTEEEEEETTCEEEEEEECTTTHHH
T ss_pred cccCCEEEEEeCCcEEEEEEcccCcEEEEeccCCCceEEecccCCCCcEEEEcCCCEEEEEEECcccEeh
Confidence 8888889899999999999999999999888778888777776666667777799988887777655433
No 300
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.85 E-value=0.0072 Score=63.11 Aligned_cols=238 Identities=9% Similarity=0.028 Sum_probs=132.7
Q ss_pred ceeEEEEecC-CCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCC---C-eEEEEeCC
Q 004214 241 EILDLKFLGE-EEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKD---N-SVRLWDSE 315 (768)
Q Consensus 241 ~i~~~~~~~~-~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~d---g-~i~iwd~~ 315 (768)
....+++.+. +...|.++...+.|+.++..++....... ......+++ +.++++ ++++.... . .+...+..
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~-~~~~P~gia--vd~dG~-lyVad~~~~~~~~gv~~~~~~ 215 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT-NIGQCADVN--FTLNGD-MVVVDDQSSDTNTGIYLFTRA 215 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC-CCSCEEEEE--ECTTCC-EEEEECCSCTTSEEEEEECGG
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec-CCCCccEEE--ECCCCC-EEEEcCCCCcccceEEEEECC
Confidence 3567788764 34556666555899999998877664443 344466666 666666 45554321 1 13333322
Q ss_pred CceE-EEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCE
Q 004214 316 SRCC-VGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSL 394 (768)
Q Consensus 316 ~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 394 (768)
.+.. ...+. .......++++|+...++++-..++.|..++...+... ... ...........++++|+++.
T Consensus 216 ~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~-------~~~-~~~~~~~~~~~ia~dpdG~~ 286 (433)
T 4hw6_A 216 SGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLT-------EEE-VMMDTKGSNFHIVWHPTGDW 286 (433)
T ss_dssp GTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEE-------EEE-EECSCCSSCEEEEECTTSSE
T ss_pred CCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEE-------EEE-eccCCCCCcccEEEeCCCCE
Confidence 1110 01111 12334567888844546666667788888887633110 000 01111122346999999985
Q ss_pred EEEE-eCCCcEEEEeCC--CCce--EEEEecc---------------CCCeEEEEE---------ccCCCEEEEeeCCCc
Q 004214 395 VCTG-SQDRTACVWRLP--DLVS--VVTFRGH---------------KRGIWSVEF---------SPVDQVVITASGDKT 445 (768)
Q Consensus 395 l~~~-~~dg~i~i~d~~--~~~~--~~~~~~~---------------~~~v~~v~~---------s~~~~~l~t~~~d~~ 445 (768)
|..+ ...+.|..++.. ++.. ...+.+. -.....+++ .++|.+.++-...+.
T Consensus 287 LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~ 366 (433)
T 4hw6_A 287 AYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHT 366 (433)
T ss_dssp EEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTE
T ss_pred EEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCE
Confidence 5544 456789998865 2321 1222221 123567899 777777777777889
Q ss_pred EEEEeCCCCceeEEeecC------------------CCcEEEEEEE-eCCCEEEEEeCCCcEEEEEC
Q 004214 446 IKIWSISDGSCLKTFEGH------------------TSSVLRASFL-TRGAQIVSCGADGLVKLWTV 493 (768)
Q Consensus 446 i~iwd~~~~~~~~~~~~~------------------~~~v~~~~~s-~~~~~l~s~~~dg~i~iwd~ 493 (768)
|+.++. +|. +.++.+. -.....+++. ++|.++++=...+.|+.+++
T Consensus 367 I~~~~~-~G~-v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 431 (433)
T 4hw6_A 367 VRVLTP-EGR-VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAP 431 (433)
T ss_dssp EEEECT-TSE-EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred EEEECC-CCC-EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEec
Confidence 999985 563 3333322 1236678888 45544444444556776654
No 301
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.83 E-value=0.0085 Score=69.45 Aligned_cols=294 Identities=12% Similarity=0.114 Sum_probs=169.8
Q ss_pred CcEEEEECCCceeeeeeeC-CccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCC
Q 004214 262 EQVQVYDLSSMSCSYVLAG-HSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQ 340 (768)
Q Consensus 262 ~~i~i~d~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 340 (768)
.+|.|.|+..+..+..-+- -.+.| ..|. ..+++.- ...++.|+|+.+...+..+.-.. +|.-=.|-....
T Consensus 48 ~~vvIidl~~~~~~~rrpi~AdsAI------MnP~-~~iiALr-ag~~lQiFnl~~k~klks~~~~e-~VvfWkWis~~~ 118 (1630)
T 1xi4_A 48 AQVVIIDMNDPSNPIRRPISADSAI------MNPA-SKVIALK-AGKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLNT 118 (1630)
T ss_pred ceEEEEECCCCCCcccccccchhhc------cCCC-cceEEEe-cCCeEEEeehHHhhhhcccccCC-CceEEEecCCCe
Confidence 4788999988665422211 11111 3333 3434443 47899999999988777766544 343334443322
Q ss_pred cEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeecc----CCCeEEEEEccCCCEEEEEe-------CCCcEEEEeC
Q 004214 341 NFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAH----GKDINSLAVAPNDSLVCTGS-------QDRTACVWRL 409 (768)
Q Consensus 341 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~----~~~i~~~~~s~~~~~l~~~~-------~dg~i~i~d~ 409 (768)
|+-. .+..|.-|++.+.. . +...+..| +..|..-..+++.++++..+ -.|.+.+|..
T Consensus 119 --l~lV-T~~aVyHW~~~~~s-~--------P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~ 186 (1630)
T 1xi4_A 119 --VALV-TDNAVYHWSMEGES-Q--------PVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSV 186 (1630)
T ss_pred --eEEE-cCCeEEEeccCCCC-c--------cHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeec
Confidence 3333 34579999996521 1 11111111 46788888889998887544 2478888887
Q ss_pred CCCceEEEEeccCCCeEEEEEcc--C-CCEEEEeeC---CCcEEEEeCCCC---cee------EEee---cCCCcEEEEE
Q 004214 410 PDLVSVVTFRGHKRGIWSVEFSP--V-DQVVITASG---DKTIKIWSISDG---SCL------KTFE---GHTSSVLRAS 471 (768)
Q Consensus 410 ~~~~~~~~~~~~~~~v~~v~~s~--~-~~~l~t~~~---d~~i~iwd~~~~---~~~------~~~~---~~~~~v~~~~ 471 (768)
+.+ ....+.||......+.... . ..+++.+.. .+.++|-++... .+. ..+. .......++.
T Consensus 187 er~-~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~ 265 (1630)
T 1xi4_A 187 DRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQ 265 (1630)
T ss_pred ccc-cchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEE
Confidence 654 2334555554433333221 1 122222211 268888888542 111 1111 1233445677
Q ss_pred EEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCHHHHHHHHHH---H
Q 004214 472 FLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAEREEAFRK---E 548 (768)
Q Consensus 472 ~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~---~ 548 (768)
.++.-..+...+.-|.|.+||+.||.++..-+-...+|...+-++...-++.....|.|.--.++......-.... .
T Consensus 266 vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~iv~yi~~~l~~~ 345 (1630)
T 1xi4_A 266 ISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENIIPYITNVLQNP 345 (1630)
T ss_pred eccccCEEEEEecCceEEEEecccchhhhhccccCCceEEeccCCCCCceEEEcCCceEEEEEEccchhhhhHhhccCCH
Confidence 7777778888889999999999999998776656666666555554444555557777665555544332211110 0
Q ss_pred H-------------HHHHhhhHHHHhhcccchHHHHHHHhhc
Q 004214 549 E-------------EAVLRGQELENAVLDADYTKAIQVAFEL 577 (768)
Q Consensus 549 ~-------------~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 577 (768)
+ ......++++.++..++|.+|-.+|...
T Consensus 346 ~la~~~a~r~~lpGad~l~~~~F~~l~~~g~y~~AA~~aa~s 387 (1630)
T 1xi4_A 346 DLALRMAVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANA 387 (1630)
T ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 0 0122345688899999999999988764
No 302
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.83 E-value=0.011 Score=61.83 Aligned_cols=254 Identities=11% Similarity=0.036 Sum_probs=140.5
Q ss_pred ceeEEEEecC-CCCEEEEEeCCCcEEEEECCCceeeeeeeCCc---cceEEEeeee-------ecCCCEEEEEEeCCC--
Q 004214 241 EILDLKFLGE-EEQYLAVATNIEQVQVYDLSSMSCSYVLAGHS---EIVLCLDTCA-------LSSGKILIVTGSKDN-- 307 (768)
Q Consensus 241 ~i~~~~~~~~-~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~---~~v~~l~~~~-------~~~~~~~l~~~~~dg-- 307 (768)
....++|.|. .+.++++....+.|+++|+.++.......... .....++ + .+++..++++...++
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia--~~~~~~~~d~~G~~lyvad~~~~~~ 217 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIA--FNKKIEGYADEAEYMIVAIDYDGKG 217 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEE--ECCCBTTTBCTTCEEEEEECCCTTG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEE--EeecccccCCCCCEEEEEeCCCCCc
Confidence 4567778763 44455555555789999999888776554322 2356665 5 667776455544432
Q ss_pred ----eEEEEeCCC-ceEE-----EeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCC-------CCCC-CCccccc
Q 004214 308 ----SVRLWDSES-RCCV-----GVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFD-------GLSD-DAEQPMN 369 (768)
Q Consensus 308 ----~i~iwd~~~-~~~~-----~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~-------~~~~-~~~~~~~ 369 (768)
.|.+++... +... ..+.. -.....++++|++..++++-..++.|..+|+. .+.. .+..+..
T Consensus 218 ~~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~ 296 (496)
T 3kya_A 218 DESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNN 296 (496)
T ss_dssp GGEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGC
T ss_pred ccCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccc
Confidence 266665333 1111 11111 12335678899767677788888999999986 3321 0000000
Q ss_pred ---cceeeEeeccCCCeEEEEEccCCCEEEEE-eCCCcEEEEeCC--CCce--EEEEecc---C------------CCeE
Q 004214 370 ---LKAKAVVAAHGKDINSLAVAPNDSLVCTG-SQDRTACVWRLP--DLVS--VVTFRGH---K------------RGIW 426 (768)
Q Consensus 370 ---~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~dg~i~i~d~~--~~~~--~~~~~~~---~------------~~v~ 426 (768)
.... ...........++|+|+|+.|..+ +..+.|+.++.. .+.. ...+.+. . ....
T Consensus 297 ~g~~~~l-~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~ 375 (496)
T 3kya_A 297 PNTFKQL-FTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPC 375 (496)
T ss_dssp TTTEEEE-EECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEE
T ss_pred cccccee-EecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCe
Confidence 0011 111223446799999999965544 456788886653 3321 1223221 0 1233
Q ss_pred -EEEEc-------cCCCEEEEeeCCCcEEEEeCCCCceeEEeecC------------------------CCcEEEEEEEe
Q 004214 427 -SVEFS-------PVDQVVITASGDKTIKIWSISDGSCLKTFEGH------------------------TSSVLRASFLT 474 (768)
Q Consensus 427 -~v~~s-------~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~------------------------~~~v~~~~~s~ 474 (768)
.++.. +++.++++=.....|+.++ .+| .+.++.+. -.....+++.+
T Consensus 376 ~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G-~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~ 453 (496)
T 3kya_A 376 QGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEG-IVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDD 453 (496)
T ss_dssp EEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTC-BEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEET
T ss_pred EEEEEccccccccCCCeEEEEECCCCEEEEEe-CCC-CEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEEC
Confidence 44554 4567777767778899998 456 34444332 12356778877
Q ss_pred C-CCEEEEEeCCCcEEEEECCCCeEEE
Q 004214 475 R-GAQIVSCGADGLVKLWTVRTGECIA 500 (768)
Q Consensus 475 ~-~~~l~s~~~dg~i~iwd~~~~~~~~ 500 (768)
+ |.+.++=.....|+.+++....++.
T Consensus 454 ~~g~lyVaD~~N~rIrki~~~~~~~~~ 480 (496)
T 3kya_A 454 VKEMFYVHDQVGHTIRTISMEQEENVA 480 (496)
T ss_dssp TTTEEEEEETTTTEEEEEEECCCC---
T ss_pred CCCEEEEEeCCCCEEEEEECCCCcccc
Confidence 6 5444444445677777766554443
No 303
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.76 E-value=0.012 Score=58.12 Aligned_cols=203 Identities=11% Similarity=0.144 Sum_probs=123.1
Q ss_pred CCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeee--eecCCCE--E-EEEEeC--CCeEEEEeC--CCceEEE
Q 004214 251 EEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTC--ALSSGKI--L-IVTGSK--DNSVRLWDS--ESRCCVG 321 (768)
Q Consensus 251 ~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~--~~~~~~~--~-l~~~~~--dg~i~iwd~--~~~~~~~ 321 (768)
...+++.....+.+.+||+ +++.+..+.. +.+..++.- +.-.++. + +++... +++|.+|++ .++. +.
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~ 114 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQ 114 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-ee
Confidence 3345666666789999999 7777777764 233333311 1112221 2 333333 579999966 4443 43
Q ss_pred eeec------cc-CcEEEEEE--ecC-CCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccC
Q 004214 322 VGTG------HM-GAVGAVAF--SKK-LQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN 391 (768)
Q Consensus 322 ~~~~------~~-~~v~~~~~--~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 391 (768)
.+.. .. ..+..+|+ +|. +..++++...+|.+..|++....... ...+....+. ....+..+.+.+.
T Consensus 115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~---~~~~lVR~f~-lgsq~EgcvvDd~ 190 (355)
T 3amr_A 115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGY---ISGKKVRAFK-MNSQTEGMAADDE 190 (355)
T ss_dssp ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSC---EEEEEEEEEE-CSSCEEEEEEETT
T ss_pred eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCc---ccceEEEEec-CCCCcceEEEcCC
Confidence 3321 11 45566777 664 33478888899999999985321110 1222223322 3467889999998
Q ss_pred CCEEEEEeCCCcEEEEeCC-----CCceEEEEe-cc-CCCeEEEEE--ccCCC-EEEEee-CCCcEEEEeCC-CCceeEE
Q 004214 392 DSLVCTGSQDRTACVWRLP-----DLVSVVTFR-GH-KRGIWSVEF--SPVDQ-VVITAS-GDKTIKIWSIS-DGSCLKT 459 (768)
Q Consensus 392 ~~~l~~~~~dg~i~i~d~~-----~~~~~~~~~-~~-~~~v~~v~~--s~~~~-~l~t~~-~d~~i~iwd~~-~~~~~~~ 459 (768)
...|+++-.+.-|..|+.+ +++.+..+. ++ ...+..|++ .++++ +|++++ .+.+..+||.. +.+.+..
T Consensus 191 ~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~ 270 (355)
T 3amr_A 191 YGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVAD 270 (355)
T ss_dssp TTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEE
T ss_pred CCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEE
Confidence 8899999998777777754 344554442 22 236788887 45555 566665 67799999986 5566666
Q ss_pred ee
Q 004214 460 FE 461 (768)
Q Consensus 460 ~~ 461 (768)
|.
T Consensus 271 f~ 272 (355)
T 3amr_A 271 FR 272 (355)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 304
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.75 E-value=0.0001 Score=82.39 Aligned_cols=221 Identities=10% Similarity=-0.047 Sum_probs=127.1
Q ss_pred CceeEEEEecCCCCEEEEEeCCCcEEEEECCC----ceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCC
Q 004214 240 EEILDLKFLGEEEQYLAVATNIEQVQVYDLSS----MSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSE 315 (768)
Q Consensus 240 ~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~----~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~ 315 (768)
..+..++|.+..+.++++-...+.|+.+++.. ......+.........++ +...++.++++-...+.|.++++.
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~gla--vD~~~g~LY~tD~~~~~I~v~d~d 483 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLA--VDWIHSNIYWTDSVLGTVSVADTK 483 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEE--CCCSSSBCEECCTTTSCEEEEBSS
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEE--EEeeCCcEEEEeccCCeEEEEecC
Confidence 35667888765555555555678899999875 222222221112233443 333455545665667889999988
Q ss_pred CceEEEeeecccCcEEEEEEecCCCcEEEEEeCC-CeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCE
Q 004214 316 SRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSD-HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSL 394 (768)
Q Consensus 316 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 394 (768)
.......+.........+++.|.+..++++-... +.|..+++..... .......-...+.|+++|++..
T Consensus 484 g~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~----------~~l~~~~l~~PnGlavd~~~~~ 553 (699)
T 1n7d_A 484 GVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI----------YSLVTENIQWPNGITLDLLSGR 553 (699)
T ss_dssp SCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC----------CEESCSSCSSCCCEEECTTTCC
T ss_pred CCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe----------eEEEeCCCCCccEEEEeccCCE
Confidence 6654444433334457788998766555544333 6777776653211 0111112234678999997555
Q ss_pred EEE-EeCCCcEEEEeCCCCceEEEEec--cCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEE
Q 004214 395 VCT-GSQDRTACVWRLPDLVSVVTFRG--HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRAS 471 (768)
Q Consensus 395 l~~-~~~dg~i~i~d~~~~~~~~~~~~--~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~ 471 (768)
|+. -+..+.|..+++........+.. .......|++..+ .++++....+.|..+|..+|+.+..+.......+.++
T Consensus 554 LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~~~~~~P~~i~ 632 (699)
T 1n7d_A 554 LYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMV 632 (699)
T ss_dssp EEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCCTTCSSCCCCC
T ss_pred EEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEeecCCCCCcEEE
Confidence 544 44567899999865433322221 1223445566543 5666666778999999888888777754333344444
Q ss_pred EE
Q 004214 472 FL 473 (768)
Q Consensus 472 ~s 473 (768)
+.
T Consensus 633 v~ 634 (699)
T 1n7d_A 633 LF 634 (699)
T ss_dssp BC
T ss_pred Ee
Confidence 43
No 305
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.74 E-value=0.036 Score=53.50 Aligned_cols=162 Identities=10% Similarity=0.110 Sum_probs=97.8
Q ss_pred eecCCCEEEEEEe------CCCeEEEEeCCCceEEEeeecccCcEEEEEEecC--CCcEEEEEeC---CCeEEEEeCCCC
Q 004214 292 ALSSGKILIVTGS------KDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKK--LQNFLVSGSS---DHTIKVWSFDGL 360 (768)
Q Consensus 292 ~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~s~~~---dg~i~iwd~~~~ 360 (768)
..++.++++++|- -.|.+.+|..+.+. .+.+.+|.+.-..+.+..+ ...+++.+.. .+.+++-++...
T Consensus 159 ~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~ 237 (365)
T 2xzh_A 159 TDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTP 237 (365)
T ss_dssp ECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE-EEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSC
T ss_pred ECCCCCEEEEEeEeccCCccceeEEEEeecccc-cceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCC
Confidence 4445555444442 23688999987653 4456777655444433211 1123333322 257888888543
Q ss_pred CCCCccccccceeeEeec---cCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEE
Q 004214 361 SDDAEQPMNLKAKAVVAA---HGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVV 437 (768)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~---~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l 437 (768)
.. ...++..+....... ..+-..++.+++.-..+..-+.-|.+++||+.++.++..-+-...+|..-+.+....=+
T Consensus 238 ~~-~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~~~~Gi 316 (365)
T 2xzh_A 238 PT-GNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGI 316 (365)
T ss_dssp CT-TCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEEGGGTEE
T ss_pred CC-CCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEeccCCCceEEecccCCCCcE
Confidence 11 112222333222222 24556789999988899999999999999999999998877777777666655544444
Q ss_pred EEeeCCCcEEEEeCCCCc
Q 004214 438 ITASGDKTIKIWSISDGS 455 (768)
Q Consensus 438 ~t~~~d~~i~iwd~~~~~ 455 (768)
+.....|.|.--.++...
T Consensus 317 ~~Vnr~GqVl~v~v~~~~ 334 (365)
T 2xzh_A 317 IGVNRKGQVLSVCVEEEN 334 (365)
T ss_dssp EEEETTCEEEEEEECTTT
T ss_pred EEEcCCCEEEEEEECccc
Confidence 455566777666665544
No 306
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.68 E-value=0.004 Score=60.83 Aligned_cols=195 Identities=12% Similarity=0.123 Sum_probs=122.4
Q ss_pred EEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeec------cCCCeEEEEE---ccCCCEEEEEeC
Q 004214 330 VGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAA------HGKDINSLAV---APNDSLVCTGSQ 400 (768)
Q Consensus 330 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~------~~~~i~~~~~---s~~~~~l~~~~~ 400 (768)
-.++.|.+....++++.-..++|..|+....... .. .... ....+..+.+ .|+++++++...
T Consensus 15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~--------~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~ 85 (334)
T 2p9w_A 15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHF--------NV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKN 85 (334)
T ss_dssp CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEE--------EE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEE
T ss_pred CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEE--------EE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEcc
Confidence 3467888865655555558999999998633110 00 1110 0113578999 688888876442
Q ss_pred -------------CCcEEEEeCC---CCceEEEEe--cc-----------CCCeEEEEEccCCCEEEEeeCC-CcEEEEe
Q 004214 401 -------------DRTACVWRLP---DLVSVVTFR--GH-----------KRGIWSVEFSPVDQVVITASGD-KTIKIWS 450 (768)
Q Consensus 401 -------------dg~i~i~d~~---~~~~~~~~~--~~-----------~~~v~~v~~s~~~~~l~t~~~d-~~i~iwd 450 (768)
+..+..||+. +++.+.... .. ......++..++|+..++++.- +.|..++
T Consensus 86 ~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~ 165 (334)
T 2p9w_A 86 AKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVS 165 (334)
T ss_dssp TTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEEC
T ss_pred cccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEe
Confidence 5779999999 777766554 11 1247899999999999988887 8877777
Q ss_pred CCCCceeEEee------cCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeE--EEEe-ccC---CCcEEEE-EEcCC
Q 004214 451 ISDGSCLKTFE------GHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGEC--IATY-DKH---EDKIWAL-AVGKK 517 (768)
Q Consensus 451 ~~~~~~~~~~~------~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~-~~~---~~~v~~l-~~s~~ 517 (768)
.. |+.+..+. ......+.+++.|+|+.|++....|.+..+|+.+... +..- .+. -.....| ..-.+
T Consensus 166 pd-G~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~ 244 (334)
T 2p9w_A 166 AD-GKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVG 244 (334)
T ss_dssp TT-SCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEET
T ss_pred CC-CCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccC
Confidence 64 33333332 1122366899999999998887799999999875432 2211 011 1123333 33346
Q ss_pred CCE-EEEEeCCCcEEEEE
Q 004214 518 TEM-FATGGSDALVNLWH 534 (768)
Q Consensus 518 ~~~-l~s~~~dg~v~vw~ 534 (768)
|+. |++.+..+.+.+..
T Consensus 245 G~vllV~~~~~~~~~l~S 262 (334)
T 2p9w_A 245 NESVLVGARAPYAISFRS 262 (334)
T ss_dssp TEEEEEEEETTEEEEEEC
T ss_pred CEEEEEEcCCCCEEEEEC
Confidence 777 55555565544443
No 307
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.68 E-value=0.057 Score=53.95 Aligned_cols=229 Identities=10% Similarity=0.087 Sum_probs=121.8
Q ss_pred CCceeEEEEecCCCCEEEEEeCCCcEEEEECCCce---eeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCC
Q 004214 239 NEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMS---CSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSE 315 (768)
Q Consensus 239 ~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~---~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~ 315 (768)
...+..+.|.+ +..+++ +..+.|.. ....++ .......+...+..+. +..++ .+++++ .+|.|..- ..
T Consensus 79 ~~~~~~i~~~~--~~~~~~-g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~--~~~~~-~~~~~~-~~g~v~~S-~D 149 (327)
T 2xbg_A 79 DYRFNSVSFQG--NEGWIV-GEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIK--ALGNG-SAEMIT-NVGAIYRT-KD 149 (327)
T ss_dssp CCEEEEEEEET--TEEEEE-EETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEE--EEETT-EEEEEE-TTCCEEEE-SS
T ss_pred CccEEEEEecC--CeEEEE-ECCCeEEE-ECCCCCCceECccccCCCCCeEEEE--EECCC-CEEEEe-CCccEEEE-cC
Confidence 34677888763 344444 44464443 222232 2211111223455554 44444 434444 45654322 22
Q ss_pred Cce-EEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEE-EeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCC
Q 004214 316 SRC-CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKV-WSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDS 393 (768)
Q Consensus 316 ~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~i-wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 393 (768)
.++ -......+...+..+++.+++. +++.+ .+|.+.. +|-. +. ..... .......+..+++.+++.
T Consensus 150 gG~tW~~~~~~~~~~~~~~~~~~~~~-~~~~g-~~G~~~~S~d~g-G~-------tW~~~--~~~~~~~~~~~~~~~~g~ 217 (327)
T 2xbg_A 150 SGKNWQALVQEAIGVMRNLNRSPSGE-YVAVS-SRGSFYSTWEPG-QT-------AWEPH--NRTTSRRLHNMGFTPDGR 217 (327)
T ss_dssp TTSSEEEEECSCCCCEEEEEECTTSC-EEEEE-TTSSEEEEECTT-CS-------SCEEE--ECCSSSCEEEEEECTTSC
T ss_pred CCCCCEEeecCCCcceEEEEEcCCCc-EEEEE-CCCcEEEEeCCC-CC-------ceeEC--CCCCCCccceeEECCCCC
Confidence 222 2222334556788999998754 55544 4454433 3321 10 11111 123456788899999887
Q ss_pred EEEEEeCCCcEEEEeCCCCceEEEEe-c---cCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeec---CCCc
Q 004214 394 LVCTGSQDRTACVWRLPDLVSVVTFR-G---HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEG---HTSS 466 (768)
Q Consensus 394 ~l~~~~~dg~i~i~d~~~~~~~~~~~-~---~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~---~~~~ 466 (768)
+++ ++.+|.+++.+...++.-..+. + +...+.++.+.+++.+++++. ++.| .+..+.|+.-..+.. ....
T Consensus 218 ~~~-~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~ 294 (327)
T 2xbg_A 218 LWM-IVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSN 294 (327)
T ss_dssp EEE-EETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSC
T ss_pred EEE-EeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCC
Confidence 664 4567877776433233222222 1 223588999998888777664 5766 455555654444442 3456
Q ss_pred EEEEEEEeCCCEEEEEeCCCcEEEEE
Q 004214 467 VLRASFLTRGAQIVSCGADGLVKLWT 492 (768)
Q Consensus 467 v~~~~~s~~~~~l~s~~~dg~i~iwd 492 (768)
+.++.|.+++ .+++++.+|.|.-++
T Consensus 295 ~~~v~~~~~~-~~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 295 FYKILFFSPD-QGFILGQKGILLRYV 319 (327)
T ss_dssp CCEEEEEETT-EEEEECSTTEEEEEC
T ss_pred eEEEEEECCC-ceEEEcCCceEEEEc
Confidence 7888888655 466677788777665
No 308
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.54 E-value=0.0088 Score=59.19 Aligned_cols=218 Identities=12% Similarity=0.082 Sum_probs=107.4
Q ss_pred CeEEEEeCCCceEEEeeecccCcE-EEEEEecCCCcEEEEEeCC-----CeEEEEeCCCCCCCCccccccceeeEeeccC
Q 004214 307 NSVRLWDSESRCCVGVGTGHMGAV-GAVAFSKKLQNFLVSGSSD-----HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHG 380 (768)
Q Consensus 307 g~i~iwd~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 380 (768)
..+.+||..+++............ .+++. .+ ..+++.|+.+ ..+.+||........ ...........
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~-~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~-----W~~~~~~p~~r 103 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKRRYVASVS-LH-DRIYVIGGYDGRSRLSSVECLDYTADEDGV-----WYSVAPMNVRR 103 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEE-ET-TEEEEECCBCSSCBCCCEEEEETTCCTTCC-----CEEECCCSSCC
T ss_pred eEEEEEcCCCCeEEeCCCCChhhccccEEE-EC-CEEEEEcCCCCCccCceEEEEECCCCCCCe-----eEECCCCCCCc
Confidence 368889988876544322111111 11222 23 3467777754 458888876542000 11111001111
Q ss_pred CCeEEEEEccCCCEEEEEeCCC-----cEEEEeCCCCceEE--EEeccCCCeEEEEEccCCCEEEEeeCC-----CcEEE
Q 004214 381 KDINSLAVAPNDSLVCTGSQDR-----TACVWRLPDLVSVV--TFRGHKRGIWSVEFSPVDQVVITASGD-----KTIKI 448 (768)
Q Consensus 381 ~~i~~~~~s~~~~~l~~~~~dg-----~i~i~d~~~~~~~~--~~~~~~~~v~~v~~s~~~~~l~t~~~d-----~~i~i 448 (768)
....++. .++++++.|+.++ .+.+||+.+.+-.. .+......-.++.+ ++++++.|+.+ ..+.+
T Consensus 104 ~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~ 179 (301)
T 2vpj_A 104 GLAGATT--LGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEK 179 (301)
T ss_dssp BSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEE
T ss_pred cceeEEE--ECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEE
Confidence 1112222 2677778776543 58889987764322 22211111222222 57777777654 45889
Q ss_pred EeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCC-----CcEEEEECCCCeEEEEeccCCC--cEEEEEEcCCCCEE
Q 004214 449 WSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGAD-----GLVKLWTVRTGECIATYDKHED--KIWALAVGKKTEMF 521 (768)
Q Consensus 449 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~--~v~~l~~s~~~~~l 521 (768)
||+.+.+-...-..........+..-+++.++.|+.+ ..+.+||+.+.+....-..... ...++.+ +++.+
T Consensus 180 ~d~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~ 257 (301)
T 2vpj_A 180 YDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL--RGRLY 257 (301)
T ss_dssp EETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEE
T ss_pred EeCCCCcEEeCCCCCcccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE--CCEEE
Confidence 9987764322211111111111222366677777764 4689999988764433221111 1122222 67777
Q ss_pred EEEeCCC-----cEEEEEcCC
Q 004214 522 ATGGSDA-----LVNLWHDST 537 (768)
Q Consensus 522 ~s~~~dg-----~v~vw~~~~ 537 (768)
+.||.++ .+.+||+.+
T Consensus 258 v~GG~~~~~~~~~v~~yd~~~ 278 (301)
T 2vpj_A 258 AIAGYDGNSLLSSIECYDPII 278 (301)
T ss_dssp EECCBCSSSBEEEEEEEETTT
T ss_pred EEcCcCCCcccccEEEEcCCC
Confidence 7777653 467777664
No 309
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.49 E-value=0.085 Score=53.26 Aligned_cols=228 Identities=12% Similarity=0.091 Sum_probs=121.6
Q ss_pred ceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceE--EEeee---cccCcEEEEEEecC---CCcEEEEEeCC-----C
Q 004214 284 IVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC--VGVGT---GHMGAVGAVAFSKK---LQNFLVSGSSD-----H 350 (768)
Q Consensus 284 ~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~---~~~~~v~~~~~~~~---~~~~l~s~~~d-----g 350 (768)
....++ +.+++. ++.+..+|.|.+++ .+.. +..+. ........++++|+ +..+.++-... +
T Consensus 32 ~P~~ia--~~pdG~--l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~ 105 (352)
T 2ism_A 32 VPWALA--FLPDGG--MLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRN 105 (352)
T ss_dssp CEEEEE--ECTTSC--EEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEE
T ss_pred CceEEE--EcCCCe--EEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCcc
Confidence 344555 666665 44456679999998 3432 22111 12356789999998 55455554433 5
Q ss_pred eEEEEeCCCCCCCCcccccccee-eEee---ccCCCeEEEEEccCCCEEEEEeC-------------CCcEEEEeCCCC-
Q 004214 351 TIKVWSFDGLSDDAEQPMNLKAK-AVVA---AHGKDINSLAVAPNDSLVCTGSQ-------------DRTACVWRLPDL- 412 (768)
Q Consensus 351 ~i~iwd~~~~~~~~~~~~~~~~~-~~~~---~~~~~i~~~~~s~~~~~l~~~~~-------------dg~i~i~d~~~~- 412 (768)
.|..|+...... ...... .... ........++|.|+|.+.++.+. .|.|.-++....
T Consensus 106 ~v~r~~~~~~~~-----~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~ 180 (352)
T 2ism_A 106 QVVRLRHLGERG-----VLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEP 180 (352)
T ss_dssp EEEEEEECSSCE-----EEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSB
T ss_pred EEEEEEeCCCCc-----CceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCC
Confidence 677777653210 000011 1011 11123468999999976666432 145666665430
Q ss_pred ------------ceEEEEeccCCCeEEEEEcc-CCCEEEEeeCCCcE------EEEeCCCCc------------------
Q 004214 413 ------------VSVVTFRGHKRGIWSVEFSP-VDQVVITASGDKTI------KIWSISDGS------------------ 455 (768)
Q Consensus 413 ------------~~~~~~~~~~~~v~~v~~s~-~~~~l~t~~~d~~i------~iwd~~~~~------------------ 455 (768)
.......++ .....++|+| +++++++-.....+ .|.-+..+.
T Consensus 181 p~~npf~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~ 259 (352)
T 2ism_A 181 APGNPFLGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRD 259 (352)
T ss_dssp CTTCTTTTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCC
T ss_pred CCCCcccCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcC
Confidence 111111233 2356789999 67766654433331 122222221
Q ss_pred eeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeE------EEEeccCCCcEEEEEEcCCCCEEEEEe
Q 004214 456 CLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGEC------IATYDKHEDKIWALAVGKKTEMFATGG 525 (768)
Q Consensus 456 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~------~~~~~~~~~~v~~l~~s~~~~~l~s~~ 525 (768)
++..+. +......++| .+|..+++.-..+.|...++..... ...+-.....+..+++.|||.++++..
T Consensus 260 p~~~~~-~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 260 PLYFWP-QGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp CSEECT-TCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred CeEecC-CCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence 233332 3345667788 5676666655666787777654321 122212346789999999998777764
No 310
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.45 E-value=0.011 Score=57.80 Aligned_cols=156 Identities=6% Similarity=0.079 Sum_probs=107.7
Q ss_pred CCCeEEEEEccCCCEEEEEe-CCCcEEEEeCCCCceEEE-Eec----c--CCCeEEEEE---ccCCCEEEEee-------
Q 004214 380 GKDINSLAVAPNDSLVCTGS-QDRTACVWRLPDLVSVVT-FRG----H--KRGIWSVEF---SPVDQVVITAS------- 441 (768)
Q Consensus 380 ~~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~-~~~----~--~~~v~~v~~---s~~~~~l~t~~------- 441 (768)
.....+++|++....+..++ ..++|..|+...+..... +.+ . ...+..+.| .|+++++++..
T Consensus 12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~ 91 (334)
T 2p9w_A 12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNF 91 (334)
T ss_dssp TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCT
T ss_pred ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccc
Confidence 34456789988555555555 899999999876543333 221 0 113578999 68888887644
Q ss_pred ------CCCcEEEEeCC---CCceeEEee--c-----------CCCcEEEEEEEeCCCEEEEEeCC-CcEEEEECCCCeE
Q 004214 442 ------GDKTIKIWSIS---DGSCLKTFE--G-----------HTSSVLRASFLTRGAQIVSCGAD-GLVKLWTVRTGEC 498 (768)
Q Consensus 442 ------~d~~i~iwd~~---~~~~~~~~~--~-----------~~~~v~~~~~s~~~~~l~s~~~d-g~i~iwd~~~~~~ 498 (768)
.+..|..||+. +++.+.... . -......++..++|+.-++++.. +.|...+... +.
T Consensus 92 ~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG-~~ 170 (334)
T 2p9w_A 92 ADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADG-KT 170 (334)
T ss_dssp TSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTS-CC
T ss_pred cccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCC-CE
Confidence 26789999998 787776554 1 11347889999999988888887 7777776543 33
Q ss_pred EEEecc------CCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 004214 499 IATYDK------HEDKIWALAVGKKTEMFATGGSDALVNLWHDS 536 (768)
Q Consensus 499 ~~~~~~------~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~ 536 (768)
+..+.. .....+.|+++|+|..|++....|.|..+++.
T Consensus 171 ~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 171 VSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp EEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred EeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence 332211 11235689999999999888779999999976
No 311
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.43 E-value=0.13 Score=51.88 Aligned_cols=247 Identities=12% Similarity=0.139 Sum_probs=145.8
Q ss_pred CCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecc
Q 004214 158 ERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVG 237 (768)
Q Consensus 158 ~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~ 237 (768)
+...|.+.|+..+.....+. ....++..+|.. .+++.-....+.+|++..... .....
T Consensus 46 ~~~~vvIiDl~~~~~~~rrp-------------i~AdsAIMnP~~-~iiALrag~~lQiFnle~K~k--------lks~~ 103 (494)
T 1bpo_A 46 EQAQVVIIDMNDPSNPIRRP-------------ISADSAIMNPAS-KVIALKAGKTLQIFNIEMKSK--------MKAHT 103 (494)
T ss_dssp TCCEEEEEETTSTTSCEEEE-------------CCCSEEEECSSS-SCEEEEETTEEEEEETTTTEE--------EEEEE
T ss_pred CCCeEEEEECCCCCcceecc-------------cccceeeeCCCC-cEEEEecCCeEEEEchHHhhh--------hccee
Confidence 33467888887762221111 112344455655 455555688999999976531 11122
Q ss_pred cCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCc-eeeeeeeCCcc--ceEEEeeeeecCCCEEEEEEe------CCCe
Q 004214 238 YNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSM-SCSYVLAGHSE--IVLCLDTCALSSGKILIVTGS------KDNS 308 (768)
Q Consensus 238 ~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~-~~~~~~~~~~~--~v~~l~~~~~~~~~~~l~~~~------~dg~ 308 (768)
.+.+|.--.|.++ +.|+..+. ..|+-|++... .+.+.+.-|.. ...-+.+...++.++++++|= -.|.
T Consensus 104 ~~e~VvfWkWis~--~~l~lVT~-taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~ 180 (494)
T 1bpo_A 104 MTDDVTFWKWISL--NTVALVTD-NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGA 180 (494)
T ss_dssp CSSCCCEEEEEET--TEEEEECS-SEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEE
T ss_pred cCCCceEEEecCC--CeEEEEcC-CeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccce
Confidence 3456777788743 46666655 78999999743 34444444332 222233336777888776663 3478
Q ss_pred EEEEeCCCceEEEeeecccCcEEEEEEecCC--CcEEEEEeCC---CeEEEEeCCCCCCCCccccccceeeEee---ccC
Q 004214 309 VRLWDSESRCCVGVGTGHMGAVGAVAFSKKL--QNFLVSGSSD---HTIKVWSFDGLSDDAEQPMNLKAKAVVA---AHG 380 (768)
Q Consensus 309 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~---~~~ 380 (768)
+.+|..+.+. .+.+.+|.+.-..+.+..+. ..+++.+... +.+++-++...... ..++..+...... ...
T Consensus 181 mQLYS~er~~-sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~-~~~f~kk~vdv~fppe~~~ 258 (494)
T 1bpo_A 181 MQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTG-NQPFPKKAVDVFFPPEAQN 258 (494)
T ss_dssp EEEEESTTCC-EEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTT-CCCCCCEEEECCCCTTSTT
T ss_pred EEEeeccccc-cchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccC-CCCccceeeeeeCCccccc
Confidence 8899887653 44567776665544443211 2234444332 78999998643111 1222222222222 224
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEc
Q 004214 381 KDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFS 431 (768)
Q Consensus 381 ~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s 431 (768)
+-..++.+++.-..+..-+.-|.+++||+.++.++..-+-...+|..-+.+
T Consensus 259 DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~ 309 (494)
T 1bpo_A 259 DFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPH 309 (494)
T ss_dssp CCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE
T ss_pred CceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCCceEEeccc
Confidence 556789999988899999999999999999999988766555555443333
No 312
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.39 E-value=0.016 Score=57.36 Aligned_cols=223 Identities=13% Similarity=0.124 Sum_probs=109.1
Q ss_pred EEEEEEeCC----CeEEEEeCCCceEEEeeecccCcE-EEEEEecCCCcEEEEEeCC-----CeEEEEeCCCCCCCCccc
Q 004214 298 ILIVTGSKD----NSVRLWDSESRCCVGVGTGHMGAV-GAVAFSKKLQNFLVSGSSD-----HTIKVWSFDGLSDDAEQP 367 (768)
Q Consensus 298 ~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~ 367 (768)
.+++.|+.+ ..+..||+.+.+............ .+++.. + ..+++.|+.+ ..+..||.....
T Consensus 17 ~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~-~~lyv~GG~~~~~~~~~~~~~d~~~~~------ 88 (302)
T 2xn4_A 17 LMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM-A-GLVFAVGGFNGSLRVRTVDSYDPVKDQ------ 88 (302)
T ss_dssp EEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-T-TEEEEESCBCSSSBCCCEEEEETTTTE------
T ss_pred EEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE-C-CEEEEEeCcCCCccccceEEECCCCCc------
Confidence 345555543 357888988776443321111111 112222 3 3466777654 347778876431
Q ss_pred cccceeeEeeccCCCeEEEEEccCCCEEEEEeCCC-----cEEEEeCCCCceEEE--EeccCCCeEEEEEccCCCEEEEe
Q 004214 368 MNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDR-----TACVWRLPDLVSVVT--FRGHKRGIWSVEFSPVDQVVITA 440 (768)
Q Consensus 368 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~--~~~~~~~v~~v~~s~~~~~l~t~ 440 (768)
...............++. .++++++.|+.++ .+.+||+.+.+-... +........++. -++++++.|
T Consensus 89 --W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~G 162 (302)
T 2xn4_A 89 --WTSVANMRDRRSTLGAAV--LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV--VGGLLYAVG 162 (302)
T ss_dssp --EEEECCCSSCCBSCEEEE--ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEEC
T ss_pred --eeeCCCCCccccceEEEE--ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE--ECCEEEEEe
Confidence 111100000111112222 2677888887654 477888876543221 111111112222 256777776
Q ss_pred eCC-------CcEEEEeCCCCceeE--EeecCCCcEEEEEEEeCCCEEEEEeCCC-----cEEEEECCCCeEEEEeccCC
Q 004214 441 SGD-------KTIKIWSISDGSCLK--TFEGHTSSVLRASFLTRGAQIVSCGADG-----LVKLWTVRTGECIATYDKHE 506 (768)
Q Consensus 441 ~~d-------~~i~iwd~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~ 506 (768)
+.+ ..+.+||+.+.+-.. .+....... ++ ..-+++.++.|+.++ .+.+||+.+++-...-....
T Consensus 163 G~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~-~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~ 240 (302)
T 2xn4_A 163 GYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGA-GV-GVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNM 240 (302)
T ss_dssp CEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSC-EE-EEETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSS
T ss_pred CCCCCCCccccEEEEEeCCCCcEEECCCCccccccc-cE-EEECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCC
Confidence 542 358899987764222 121111111 12 223667777777643 68899998875443221111
Q ss_pred C--cEEEEEEcCCCCEEEEEeCCC-----cEEEEEcCCH
Q 004214 507 D--KIWALAVGKKTEMFATGGSDA-----LVNLWHDSTA 538 (768)
Q Consensus 507 ~--~v~~l~~s~~~~~l~s~~~dg-----~v~vw~~~~~ 538 (768)
. ....+. -++..++.||.++ .+.+||+.+.
T Consensus 241 ~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 241 CRRNAGVCA--VNGLLYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp CCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred ccccCeEEE--ECCEEEEECCcCCCcccccEEEEcCCCC
Confidence 1 111222 2677778887654 3788887653
No 313
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.33 E-value=0.022 Score=56.34 Aligned_cols=225 Identities=8% Similarity=0.065 Sum_probs=112.4
Q ss_pred CEEEEEEeC--CCeEEEEeCCCceEEEeeecc--cCcEEEEEEecCCCcEEEEEeCC----CeEEEEeCCCCCCCCcccc
Q 004214 297 KILIVTGSK--DNSVRLWDSESRCCVGVGTGH--MGAVGAVAFSKKLQNFLVSGSSD----HTIKVWSFDGLSDDAEQPM 368 (768)
Q Consensus 297 ~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~ 368 (768)
+.+++.|+. ...+.+||..+++....-... ...-.++.+ + ..+++.|+.+ ..+..||.....
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~-~~lyv~GG~~~~~~~~~~~~d~~~~~------- 81 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW--D-NVVYILGGSQLFPIKRMDCYNVVKDS------- 81 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE--T-TEEEEECCBSSSBCCEEEEEETTTTE-------
T ss_pred ceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE--C-CEEEEEeCCCCCCcceEEEEeCCCCe-------
Confidence 345666654 357889999887655432211 111122222 3 3367777654 567788876431
Q ss_pred ccceeeEeeccCCCeEEEEEccCCCEEEEEeCC------CcEEEEeCCCCceEEE--EeccCCCeEEEEEccCCCEEEEe
Q 004214 369 NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQD------RTACVWRLPDLVSVVT--FRGHKRGIWSVEFSPVDQVVITA 440 (768)
Q Consensus 369 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d------g~i~i~d~~~~~~~~~--~~~~~~~v~~v~~s~~~~~l~t~ 440 (768)
...............++. -++++++.|+.+ ..+.+||+.+.+-... +......-.++. -++++++.|
T Consensus 82 -W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~G 156 (306)
T 3ii7_A 82 -WYSKLGPPTPRDSLAACA--AEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE--ANGLIYVCG 156 (306)
T ss_dssp -EEEEECCSSCCBSCEEEE--ETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEEC
T ss_pred -EEECCCCCccccceeEEE--ECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE--ECCEEEEEC
Confidence 111111111111112222 267788888765 4688999887643221 111111112222 256777776
Q ss_pred eC---------CCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCC-----CcEEEEECCCCeEEEE--ecc
Q 004214 441 SG---------DKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGAD-----GLVKLWTVRTGECIAT--YDK 504 (768)
Q Consensus 441 ~~---------d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~--~~~ 504 (768)
+. -..+.+||+.+.+-...-..........+..-+++.++.|+.+ ..+.+||+.+.+-... +..
T Consensus 157 G~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~ 236 (306)
T 3ii7_A 157 GSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPW 236 (306)
T ss_dssp CEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSC
T ss_pred CCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCC
Confidence 53 3458899987764222111111111111122366667777654 3588999988754332 111
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCC-----CcEEEEEcCCH
Q 004214 505 HEDKIWALAVGKKTEMFATGGSD-----ALVNLWHDSTA 538 (768)
Q Consensus 505 ~~~~v~~l~~s~~~~~l~s~~~d-----g~v~vw~~~~~ 538 (768)
......++.+ ++..++.||.+ ..+.+||+.+.
T Consensus 237 ~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 237 KGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp CBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred CccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence 1112222333 67788888754 35777887653
No 314
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.22 E-value=0.027 Score=55.56 Aligned_cols=217 Identities=15% Similarity=0.166 Sum_probs=106.5
Q ss_pred CcEEEEECCCceeeee--eeCCccceEEEeeeeecCCCEEEEEEeCC-----CeEEEEeCCCce---EEEeee--cccCc
Q 004214 262 EQVQVYDLSSMSCSYV--LAGHSEIVLCLDTCALSSGKILIVTGSKD-----NSVRLWDSESRC---CVGVGT--GHMGA 329 (768)
Q Consensus 262 ~~i~i~d~~~~~~~~~--~~~~~~~v~~l~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~---~~~~~~--~~~~~ 329 (768)
..+.+||..+.+-... +........+ ... ++.+++.|+.+ ..+.+||..+++ ...... .....
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~----~~~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~ 105 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKRRYVAS----VSL-HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGL 105 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEE----EEE-TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBS
T ss_pred eEEEEEcCCCCeEEeCCCCChhhccccE----EEE-CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccc
Confidence 4788899887653322 1111111111 112 34456777654 468999988765 333221 11111
Q ss_pred EEEEEEecCCCcEEEEEeCC-----CeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCC---
Q 004214 330 VGAVAFSKKLQNFLVSGSSD-----HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQD--- 401 (768)
Q Consensus 330 v~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d--- 401 (768)
-.++.+ + ..+++.|+.+ ..+.+||+.... ...............++. .++++++.|+.+
T Consensus 106 ~~~~~~--~-~~lyv~GG~~~~~~~~~~~~~d~~~~~--------W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~ 172 (301)
T 2vpj_A 106 AGATTL--G-DMIYVSGGFDGSRRHTSMERYDPNIDQ--------WSMLGDMQTAREGAGLVV--ASGVIYCLGGYDGLN 172 (301)
T ss_dssp CEEEEE--T-TEEEEECCBCSSCBCCEEEEEETTTTE--------EEEEEECSSCCBSCEEEE--ETTEEEEECCBCSSC
T ss_pred eeEEEE--C-CEEEEEcccCCCcccceEEEEcCCCCe--------EEECCCCCCCcccceEEE--ECCEEEEECCCCCCc
Confidence 122222 3 3466666643 357788876431 111111111111112222 267788887765
Q ss_pred --CcEEEEeCCCCceEEE--EeccCCCeEEEEEccCCCEEEEeeCC-----CcEEEEeCCCCceeEEeecCCCcEEEEEE
Q 004214 402 --RTACVWRLPDLVSVVT--FRGHKRGIWSVEFSPVDQVVITASGD-----KTIKIWSISDGSCLKTFEGHTSSVLRASF 472 (768)
Q Consensus 402 --g~i~i~d~~~~~~~~~--~~~~~~~v~~v~~s~~~~~l~t~~~d-----~~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 472 (768)
..+.+||+.+.+-... +........++.+ ++++++.|+.+ ..+.+||+.+.+-...-..........+.
T Consensus 173 ~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~ 250 (301)
T 2vpj_A 173 ILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGAT 250 (301)
T ss_dssp BCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE
T ss_pred ccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEE
Confidence 3588999877643322 1111111122222 56777777754 46899999876432221111111111122
Q ss_pred EeCCCEEEEEeCC-----CcEEEEECCCCeE
Q 004214 473 LTRGAQIVSCGAD-----GLVKLWTVRTGEC 498 (768)
Q Consensus 473 s~~~~~l~s~~~d-----g~i~iwd~~~~~~ 498 (768)
.-+++.++.|+.+ ..+.+||+.+.+-
T Consensus 251 ~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 281 (301)
T 2vpj_A 251 VLRGRLYAIAGYDGNSLLSSIECYDPIIDSW 281 (301)
T ss_dssp EETTEEEEECCBCSSSBEEEEEEEETTTTEE
T ss_pred EECCEEEEEcCcCCCcccccEEEEcCCCCeE
Confidence 2367777777765 3578888877653
No 315
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.12 E-value=0.051 Score=53.60 Aligned_cols=218 Identities=13% Similarity=0.150 Sum_probs=105.7
Q ss_pred CcEEEEECCCceeeee--eeCCccceEEEeeeeecCCCEEEEEEeCC-----CeEEEEeCCCceEEEeeecccC--cEEE
Q 004214 262 EQVQVYDLSSMSCSYV--LAGHSEIVLCLDTCALSSGKILIVTGSKD-----NSVRLWDSESRCCVGVGTGHMG--AVGA 332 (768)
Q Consensus 262 ~~i~i~d~~~~~~~~~--~~~~~~~v~~l~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~--~v~~ 332 (768)
..+..||..+..-... ++.....- ++ ... ++.+++.|+.+ ..+.+||..+.+.......... .-.+
T Consensus 30 ~~~~~~d~~~~~W~~~~~~p~~r~~~-~~---~~~-~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~ 104 (302)
T 2xn4_A 30 RSVECYDFKEERWHQVAELPSRRCRA-GM---VYM-AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGA 104 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSC-EE---EEE-TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEE
T ss_pred CcEEEEcCcCCcEeEcccCCcccccc-eE---EEE-CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEE
Confidence 4678888877653322 11111111 11 112 34456666654 3588999988765443221111 1122
Q ss_pred EEEecCCCcEEEEEeCCC-----eEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCC------
Q 004214 333 VAFSKKLQNFLVSGSSDH-----TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQD------ 401 (768)
Q Consensus 333 ~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d------ 401 (768)
+.+ + ..+++.|+.++ .+..||+.... ...............++. -++++++.|+.+
T Consensus 105 ~~~--~-~~iyv~GG~~~~~~~~~~~~~d~~~~~--------W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~ 171 (302)
T 2xn4_A 105 AVL--N-GLLYAVGGFDGSTGLSSVEAYNIKSNE--------WFHVAPMNTRRSSVGVGV--VGGLLYAVGGYDVASRQC 171 (302)
T ss_dssp EEE--T-TEEEEEEEECSSCEEEEEEEEETTTTE--------EEEECCCSSCCBSCEEEE--ETTEEEEECCEETTTTEE
T ss_pred EEE--C-CEEEEEcCCCCCccCceEEEEeCCCCe--------EeecCCCCCcccCceEEE--ECCEEEEEeCCCCCCCcc
Confidence 222 3 34667776553 46677766431 111100000011111222 266777777643
Q ss_pred -CcEEEEeCCCCceEEE--EeccCCCeEEEEEccCCCEEEEeeCC-----CcEEEEeCCCCceeEEeecCCCcEEEEEEE
Q 004214 402 -RTACVWRLPDLVSVVT--FRGHKRGIWSVEFSPVDQVVITASGD-----KTIKIWSISDGSCLKTFEGHTSSVLRASFL 473 (768)
Q Consensus 402 -g~i~i~d~~~~~~~~~--~~~~~~~v~~v~~s~~~~~l~t~~~d-----~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s 473 (768)
..+.+||+.+.+-... +........++.+ ++++++.|+.+ ..+.+||+.+.+-...-.............
T Consensus 172 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~ 249 (302)
T 2xn4_A 172 LSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCA 249 (302)
T ss_dssp CCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE
T ss_pred ccEEEEEeCCCCcEEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEE
Confidence 3588999877643221 1111111222222 57777777654 368899987764222111011111111222
Q ss_pred eCCCEEEEEeCCC-----cEEEEECCCCeEE
Q 004214 474 TRGAQIVSCGADG-----LVKLWTVRTGECI 499 (768)
Q Consensus 474 ~~~~~l~s~~~dg-----~i~iwd~~~~~~~ 499 (768)
.+++.++.|+.++ .+.+||+.+.+-.
T Consensus 250 ~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 280 (302)
T 2xn4_A 250 VNGLLYVVGGDDGSCNLASVEYYNPTTDKWT 280 (302)
T ss_dssp ETTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred ECCEEEEECCcCCCcccccEEEEcCCCCeEE
Confidence 3677777777654 4889998876543
No 316
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.10 E-value=0.13 Score=51.39 Aligned_cols=170 Identities=6% Similarity=0.070 Sum_probs=100.7
Q ss_pred CCCeEEEEeCCCCCCCCccccccceeeE----eeccCCCeEEEEEcc--CCC--EEEEEeC--CCcEEEEeCCCCc----
Q 004214 348 SDHTIKVWSFDGLSDDAEQPMNLKAKAV----VAAHGKDINSLAVAP--NDS--LVCTGSQ--DRTACVWRLPDLV---- 413 (768)
Q Consensus 348 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~----~~~~~~~i~~~~~s~--~~~--~l~~~~~--dg~i~i~d~~~~~---- 413 (768)
.+|.|.++|........ ..... .....-....+.+.+ ++. ++++-.. +.+|.+|++....
T Consensus 81 ~~G~I~~~d~~~~~~~~------~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~ 154 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAV------SELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLL 154 (355)
T ss_dssp -CCEEEEEETTSSSCCE------EECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEE
T ss_pred CCCeEEEEecCCCCCce------EEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEE
Confidence 68899999986422111 11111 111223556677655 343 3444333 4578888775432
Q ss_pred eEEEEecc-CCCeEEEEEccCCCEEEEeeC-----------------CCcEEEEeCCCCceeEEeecCCCcEEEEEEEeC
Q 004214 414 SVVTFRGH-KRGIWSVEFSPVDQVVITASG-----------------DKTIKIWSISDGSCLKTFEGHTSSVLRASFLTR 475 (768)
Q Consensus 414 ~~~~~~~~-~~~v~~v~~s~~~~~l~t~~~-----------------d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~ 475 (768)
.+..+.+. -...+.+++.++|.+.++... .|.|.-+|. ++ +..+...-...+.++|+||
T Consensus 155 ~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~-~~~~~~~l~~pNGia~spD 231 (355)
T 3sre_A 155 HLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--ND-VRVVAEGFDFANGINISPD 231 (355)
T ss_dssp EEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TC-CEEEEEEESSEEEEEECTT
T ss_pred EEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--Ce-EEEeecCCcccCcceECCC
Confidence 22333332 235789999999998887541 244555554 33 2333333456788999999
Q ss_pred CCEEEEEeC-CCcEEEEECCC-CeE--EEEeccCCCcEEEEEEcC-CCCEEEEEeCC
Q 004214 476 GAQIVSCGA-DGLVKLWTVRT-GEC--IATYDKHEDKIWALAVGK-KTEMFATGGSD 527 (768)
Q Consensus 476 ~~~l~s~~~-dg~i~iwd~~~-~~~--~~~~~~~~~~v~~l~~s~-~~~~l~s~~~d 527 (768)
++.|+.+.. .+.|..|++.. ++. ...+ ...+..-.+++.+ +|++++++.-+
T Consensus 232 g~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~~ 287 (355)
T 3sre_A 232 GKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHPN 287 (355)
T ss_dssp SSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEESC
T ss_pred CCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEecCC
Confidence 998877654 67899999863 332 2234 2356678899999 59988877644
No 317
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.06 E-value=0.035 Score=55.21 Aligned_cols=210 Identities=10% Similarity=0.105 Sum_probs=101.0
Q ss_pred EEEEEeCCCeEEEEeCCCceEEEe-eecccCcEEEEEEecCCCcEEEEEeC-----C------CeEEEEeCCCCCCCCcc
Q 004214 299 LIVTGSKDNSVRLWDSESRCCVGV-GTGHMGAVGAVAFSKKLQNFLVSGSS-----D------HTIKVWSFDGLSDDAEQ 366 (768)
Q Consensus 299 ~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~s~~~-----d------g~i~iwd~~~~~~~~~~ 366 (768)
+++.|+ ..+..||..+++.... +..........+...+ ..+++.|+. . ..+..||.....-
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W---- 79 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKE-NQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEW---- 79 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTT-CCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEE----
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEEC-CEEEEEcCcccCCCCCccccccceEEecCCCCeE----
Confidence 355555 5799999998875431 1111122222233334 346777773 1 1266777654311
Q ss_pred ccccceeeEeeccCCCeEEEEEccCCCEEEEEeCC--------CcEEEEeCCCCceEE--EEeccCCCeEEEEEccCCCE
Q 004214 367 PMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQD--------RTACVWRLPDLVSVV--TFRGHKRGIWSVEFSPVDQV 436 (768)
Q Consensus 367 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d--------g~i~i~d~~~~~~~~--~~~~~~~~v~~v~~s~~~~~ 436 (768)
...............+. -++++++.|+.+ ..+.+||..+.+-.. .+......- +++. -++++
T Consensus 80 ----~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~i 151 (315)
T 4asc_A 80 ----LGMPPLPSPRCLFGLGE--ALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGH-TVLS-HMDLV 151 (315)
T ss_dssp ----EECCCBSSCEESCEEEE--ETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEE-ETTEE
T ss_pred ----EECCCCCcchhceeEEE--ECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccce-eEEE-ECCEE
Confidence 00000000000111122 266777777742 358899987764221 111111111 2222 35677
Q ss_pred EEEeeC-C-----CcEEEEeCCCCce--eEEeecCCCcEEEEEEEeCCCEEEEEeCCC-----cEEEEECCCCeEEEEec
Q 004214 437 VITASG-D-----KTIKIWSISDGSC--LKTFEGHTSSVLRASFLTRGAQIVSCGADG-----LVKLWTVRTGECIATYD 503 (768)
Q Consensus 437 l~t~~~-d-----~~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~ 503 (768)
++.|+. + ..+.+||+.+.+- +..+......- .+..-+++.++.|+.++ .+.+||+.+.+-...-.
T Consensus 152 yv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~--~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~ 229 (315)
T 4asc_A 152 YVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLF--GATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEA 229 (315)
T ss_dssp EEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSC--EEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECC
T ss_pred EEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhce--EEEEECCEEEEEeccCCCCccceEEEEECCCCeEEECCC
Confidence 777765 2 4688999876532 22121111111 12223667777777654 48889998875443321
Q ss_pred cCC--CcEEEEEEcCCCCEEEEEeCC
Q 004214 504 KHE--DKIWALAVGKKTEMFATGGSD 527 (768)
Q Consensus 504 ~~~--~~v~~l~~s~~~~~l~s~~~d 527 (768)
... ....++.+ +++.++.||.+
T Consensus 230 ~p~~r~~~~~~~~--~~~l~v~GG~~ 253 (315)
T 4asc_A 230 FPQERSSLSLVSL--VGTLYAIGGFA 253 (315)
T ss_dssp CSSCCBSCEEEEE--TTEEEEEEEEE
T ss_pred CCCcccceeEEEE--CCEEEEECCcc
Confidence 111 11122222 66777777764
No 318
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.01 E-value=0.27 Score=49.50 Aligned_cols=240 Identities=10% Similarity=0.088 Sum_probs=126.1
Q ss_pred eEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEee-------ecccCcEEEEEEecC---CCcEEEEEeC------
Q 004214 285 VLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVG-------TGHMGAVGAVAFSKK---LQNFLVSGSS------ 348 (768)
Q Consensus 285 v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-------~~~~~~v~~~~~~~~---~~~~l~s~~~------ 348 (768)
...++ +.+++.. ++.+...|.|++++.. +.....+ .........++++|+ +..+.++-+.
T Consensus 20 P~~i~--~~pdG~~-l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~ 95 (353)
T 2g8s_A 20 PWALA--FLPDNHG-MLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGK 95 (353)
T ss_dssp EEEEE--ECSTTCC-EEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSC
T ss_pred cEEEE--EcCCCCE-EEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCC
Confidence 44555 6677763 3445567999999854 3221111 112345688999995 4444444333
Q ss_pred -CCeEEEEeCCCCCCCCccccccceee-Eee---ccCCCeEEEEEccCCCEEEEEeCC-------------CcEEEEeCC
Q 004214 349 -DHTIKVWSFDGLSDDAEQPMNLKAKA-VVA---AHGKDINSLAVAPNDSLVCTGSQD-------------RTACVWRLP 410 (768)
Q Consensus 349 -dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~---~~~~~i~~~~~s~~~~~l~~~~~d-------------g~i~i~d~~ 410 (768)
...|..|++........ ...... ... ........++|.|+|.+.++.+.. |.|.-++..
T Consensus 96 ~~~~v~r~~~~~~~~~~~---~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~d 172 (353)
T 2g8s_A 96 AGTAVGYGRLSDDLSKVT---DFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQ 172 (353)
T ss_dssp EEEEEEEEEECTTSSBEE---EEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETT
T ss_pred ceeEEEEEEECCCCCCCC---ceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCC
Confidence 23455566543211000 000000 000 111224679999999766665432 456666654
Q ss_pred CC-------------ceEEEEeccCCCeEEEEEcc-CCCEEEEeeC-CCcEEEEeCCCC---------------------
Q 004214 411 DL-------------VSVVTFRGHKRGIWSVEFSP-VDQVVITASG-DKTIKIWSISDG--------------------- 454 (768)
Q Consensus 411 ~~-------------~~~~~~~~~~~~v~~v~~s~-~~~~l~t~~~-d~~i~iwd~~~~--------------------- 454 (768)
.. .....-.++ .....++|+| +++++++-.. ++.=.|.-+..+
T Consensus 173 G~~p~~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~ 251 (353)
T 2g8s_A 173 GEIPDDNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPE 251 (353)
T ss_dssp SCCCTTCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTT
T ss_pred CCCCCCCCCcCCCCCCccEEEEcC-cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCc
Confidence 32 111111233 3467899999 5655554322 111122212111
Q ss_pred ----------ceeEEeecCCCcEEEEEEEe-------CCCEEEEEeCCCcEEEEECCCCeEEEE--e-ccCCCcEEEEEE
Q 004214 455 ----------SCLKTFEGHTSSVLRASFLT-------RGAQIVSCGADGLVKLWTVRTGECIAT--Y-DKHEDKIWALAV 514 (768)
Q Consensus 455 ----------~~~~~~~~~~~~v~~~~~s~-------~~~~l~s~~~dg~i~iwd~~~~~~~~~--~-~~~~~~v~~l~~ 514 (768)
.++..+. +......+.|.. +|.++++.-..+.|...++..++.+.. + ......+..+++
T Consensus 252 ~~~~~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~ 330 (353)
T 2g8s_A 252 AKGEIVAGTEQPVFYWK-DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRT 330 (353)
T ss_dssp CCBSSCTTSCCCSEEES-SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEE
T ss_pred ccCCCCCCccCCeEEeC-CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEE
Confidence 1122232 334677788864 466777666677888888876654432 2 223457899999
Q ss_pred cCCCCEEEEEe-CCCcEEEEEc
Q 004214 515 GKKTEMFATGG-SDALVNLWHD 535 (768)
Q Consensus 515 s~~~~~l~s~~-~dg~v~vw~~ 535 (768)
.|||.++++.. .+| +||++
T Consensus 331 ~pdG~lyv~td~~~g--~I~ri 350 (353)
T 2g8s_A 331 GPDGYLYVLTDESSG--ELLKV 350 (353)
T ss_dssp CTTSCEEEEECSTTE--EEEEE
T ss_pred CCCCcEEEEEeCCCC--EEEEE
Confidence 99999776543 344 55554
No 319
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.00 E-value=0.13 Score=51.30 Aligned_cols=189 Identities=13% Similarity=0.107 Sum_probs=109.1
Q ss_pred CCCeEEEEeCCC--ceEEE-eeec-----ccCcEEEEEEec--CCCc-EEEEEeC--CCeEEEEeCCCCCCCCccccccc
Q 004214 305 KDNSVRLWDSES--RCCVG-VGTG-----HMGAVGAVAFSK--KLQN-FLVSGSS--DHTIKVWSFDGLSDDAEQPMNLK 371 (768)
Q Consensus 305 ~dg~i~iwd~~~--~~~~~-~~~~-----~~~~v~~~~~~~--~~~~-~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~ 371 (768)
.+|.|.++|..+ .+... .+.+ .......+.+.+ ++.. ++++-.. +.+|.+|++..... ...
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~------~~~ 154 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEK------SLL 154 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTT------EEE
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCC------EEE
Confidence 689999999873 22211 1222 233566777765 3442 3444333 57888888764321 111
Q ss_pred eeeEeec-cCCCeEEEEEccCCCEEEEEeC-----------------CCcEEEEeCCCCceEEEEeccCCCeEEEEEccC
Q 004214 372 AKAVVAA-HGKDINSLAVAPNDSLVCTGSQ-----------------DRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPV 433 (768)
Q Consensus 372 ~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~-----------------dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~ 433 (768)
......+ .-...+.+++.++|.+.++... .|.|..++. ++. ..+...-...+.++|+||
T Consensus 155 ~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~-~~~~~~l~~pNGia~spD 231 (355)
T 3sre_A 155 HLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDV-RVVAEGFDFANGINISPD 231 (355)
T ss_dssp EEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCC-EEEEEEESSEEEEEECTT
T ss_pred EEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--CeE-EEeecCCcccCcceECCC
Confidence 1112211 2346789999999988777541 244555554 332 223323345688999999
Q ss_pred CCEEEEee-CCCcEEEEeCCC-Cce--eEEeecCCCcEEEEEEEe-CCCEEEEEeCCC-cEEEEECC--CCeEEEEec
Q 004214 434 DQVVITAS-GDKTIKIWSISD-GSC--LKTFEGHTSSVLRASFLT-RGAQIVSCGADG-LVKLWTVR--TGECIATYD 503 (768)
Q Consensus 434 ~~~l~t~~-~d~~i~iwd~~~-~~~--~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg-~i~iwd~~--~~~~~~~~~ 503 (768)
++.|+.+. ..+.|..|++.. +.. .+.+ ......-.+++.+ +|++.+++..+| .|..|+.. .+..+..+.
T Consensus 232 g~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P~~~~~s~v~rI~ 308 (355)
T 3sre_A 232 GKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAENPPGSEVLRIQ 308 (355)
T ss_dssp SSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEESCHHHHHSCCTTSCCCEEEEEEE
T ss_pred CCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEecCCceEEEEECCCCCCCCEEEEEE
Confidence 98777664 468899999863 332 2334 2345667788888 598877665443 45445543 245555554
No 320
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.94 E-value=0.095 Score=51.71 Aligned_cols=223 Identities=10% Similarity=0.103 Sum_probs=111.0
Q ss_pred EEEEEeC--CCcEEEEECCCceeeee--eeCCccceEEEeeeeecCCCEEEEEEeCC----CeEEEEeCCCceEEEeeec
Q 004214 254 YLAVATN--IEQVQVYDLSSMSCSYV--LAGHSEIVLCLDTCALSSGKILIVTGSKD----NSVRLWDSESRCCVGVGTG 325 (768)
Q Consensus 254 ~l~~~~~--~~~i~i~d~~~~~~~~~--~~~~~~~v~~l~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~ 325 (768)
+++.|+. ...+.+||..+.+-... +........+ ... ++.+++.|+.+ ..+.+||..+++.......
T Consensus 14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~----~~~-~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~ 88 (306)
T 3ii7_A 14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAAC----VFW-DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGP 88 (306)
T ss_dssp EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEE----EEE-TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECC
T ss_pred EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEE----EEE-CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCC
Confidence 4455543 36788999887654322 1111111111 112 34456777654 6788999988765443222
Q ss_pred ccC--cEEEEEEecCCCcEEEEEeCC------CeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEE
Q 004214 326 HMG--AVGAVAFSKKLQNFLVSGSSD------HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCT 397 (768)
Q Consensus 326 ~~~--~v~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 397 (768)
... .-.++.+ + ..+++.|+.+ ..+.+||..... ...............++. -++++++.
T Consensus 89 p~~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~~~~~~d~~~~~--------W~~~~~~p~~r~~~~~~~--~~~~iyv~ 155 (306)
T 3ii7_A 89 PTPRDSLAACAA--E-GKIYTSGGSEVGNSALYLFECYDTRTES--------WHTKPSMLTQRCSHGMVE--ANGLIYVC 155 (306)
T ss_dssp SSCCBSCEEEEE--T-TEEEEECCBBTTBSCCCCEEEEETTTTE--------EEEECCCSSCCBSCEEEE--ETTEEEEE
T ss_pred CccccceeEEEE--C-CEEEEECCCCCCCcEeeeEEEEeCCCCc--------eEeCCCCcCCcceeEEEE--ECCEEEEE
Confidence 111 1122222 3 3366777655 457888876431 111000000001111222 36677777
Q ss_pred EeC---------CCcEEEEeCCCCceEEE--EeccCCCeEEEEEccCCCEEEEeeCC-----CcEEEEeCCCCc--eeEE
Q 004214 398 GSQ---------DRTACVWRLPDLVSVVT--FRGHKRGIWSVEFSPVDQVVITASGD-----KTIKIWSISDGS--CLKT 459 (768)
Q Consensus 398 ~~~---------dg~i~i~d~~~~~~~~~--~~~~~~~v~~v~~s~~~~~l~t~~~d-----~~i~iwd~~~~~--~~~~ 459 (768)
|+. -..+.+||+.+.+-... +......-..+.+ ++++++.|+.+ ..+.+||+.+.+ .+..
T Consensus 156 GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~ 233 (306)
T 3ii7_A 156 GGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSP 233 (306)
T ss_dssp CCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEECCC
T ss_pred CCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCC
Confidence 764 34588999887643221 1111111122222 56777777653 458899987753 2222
Q ss_pred eecCCCcEEEEEEEeCCCEEEEEeCC-----CcEEEEECCCCeE
Q 004214 460 FEGHTSSVLRASFLTRGAQIVSCGAD-----GLVKLWTVRTGEC 498 (768)
Q Consensus 460 ~~~~~~~v~~~~~s~~~~~l~s~~~d-----g~i~iwd~~~~~~ 498 (768)
+.........+. -+++.++.|+.+ ..+.+||+.+.+-
T Consensus 234 ~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W 275 (306)
T 3ii7_A 234 MPWKGVTVKCAA--VGSIVYVLAGFQGVGRLGHILEYNTETDKW 275 (306)
T ss_dssp CSCCBSCCEEEE--ETTEEEEEECBCSSSBCCEEEEEETTTTEE
T ss_pred CCCCccceeEEE--ECCEEEEEeCcCCCeeeeeEEEEcCCCCeE
Confidence 221111122222 266777777754 4588889887653
No 321
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.90 E-value=0.062 Score=54.10 Aligned_cols=144 Identities=11% Similarity=0.066 Sum_probs=99.6
Q ss_pred EEccCCCEEEEEeCCCcEEEEeCCCCceEEEEecc----CCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCc-------
Q 004214 387 AVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGH----KRGIWSVEFSPVDQVVITASGDKTIKIWSISDGS------- 455 (768)
Q Consensus 387 ~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~------- 455 (768)
..+.+|..++++- ++.|+.-++......+.+... -..|..+..+|+|++||..+. ..|.|-.+..+.
T Consensus 27 ~~~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~ 104 (452)
T 3pbp_A 27 FSSQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVS 104 (452)
T ss_dssp EEETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHH
T ss_pred EEEcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccc
Confidence 3445666666654 477888887754444444433 236888999999999999865 789999887332
Q ss_pred -----eeEEeec------CCCcEEEEEEEeC---CCEEEEEeCCCcEEEEECCCC--eEEEEec---------cCCCcEE
Q 004214 456 -----CLKTFEG------HTSSVLRASFLTR---GAQIVSCGADGLVKLWTVRTG--ECIATYD---------KHEDKIW 510 (768)
Q Consensus 456 -----~~~~~~~------~~~~v~~~~~s~~---~~~l~s~~~dg~i~iwd~~~~--~~~~~~~---------~~~~~v~ 510 (768)
..+.+.- ...+|..+.|+|- +..|++-..|+.|++||+... ++. .+. .+...|.
T Consensus 105 ~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~ 183 (452)
T 3pbp_A 105 IQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDIT 183 (452)
T ss_dssp HHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEE
T ss_pred cccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEE
Confidence 1123331 3567999999984 568999999999999999752 222 232 2336788
Q ss_pred EEEEcCCCCEEEEEe--CCCcEEEE
Q 004214 511 ALAVGKKTEMFATGG--SDALVNLW 533 (768)
Q Consensus 511 ~l~~s~~~~~l~s~~--~dg~v~vw 533 (768)
+++|.+++-.|...+ .+|.|+-.
T Consensus 184 S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 184 DLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp EEEECTTSSCEEEEECTTSCEEEEE
T ss_pred EEEEcCCCcEEEEEecCCCCCEEEE
Confidence 999999887777655 77877543
No 322
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.87 E-value=0.046 Score=54.11 Aligned_cols=223 Identities=9% Similarity=0.060 Sum_probs=108.8
Q ss_pred CEEEEEEeCC----CeEEEEeCCCceEEEeeecccCcE-EEEEEecCCCcEEEEEeC----C-----CeEEEEeCCCCCC
Q 004214 297 KILIVTGSKD----NSVRLWDSESRCCVGVGTGHMGAV-GAVAFSKKLQNFLVSGSS----D-----HTIKVWSFDGLSD 362 (768)
Q Consensus 297 ~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~l~s~~~----d-----g~i~iwd~~~~~~ 362 (768)
+.+++.|+.+ ..+.+||..+++....-....... .+++.. + ..+++.|+. + ..+.+||.....-
T Consensus 25 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~-~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W 102 (308)
T 1zgk_A 25 RLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV-G-GLLYAVGGRNNSPDGNTDSSALDCYNPMTNQW 102 (308)
T ss_dssp CCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-T-TEEEEECCEEEETTEEEECCCEEEEETTTTEE
T ss_pred CEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEE-C-CEEEEECCCcCCCCCCeecceEEEECCCCCeE
Confidence 3345555532 468899988876554322111111 122222 3 336666665 2 3577788764311
Q ss_pred CCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCC-----CcEEEEeCCCCceEEE--EeccCCCeEEEEEccCCC
Q 004214 363 DAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQD-----RTACVWRLPDLVSVVT--FRGHKRGIWSVEFSPVDQ 435 (768)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~--~~~~~~~v~~v~~s~~~~ 435 (768)
. .............++.+ ++++++.|+.+ ..+.+||+.+.+-... +......-.++.+ ++.
T Consensus 103 ~--------~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~ 170 (308)
T 1zgk_A 103 S--------PCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRL 170 (308)
T ss_dssp E--------ECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTE
T ss_pred e--------ECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCE
Confidence 0 00000000111122222 67777777644 3588899876542221 1111112222223 577
Q ss_pred EEEEeeCC-----CcEEEEeCCCCcee--EEeecCCCcEEEEEEEeCCCEEEEEeCC-----CcEEEEECCCCeEEEEec
Q 004214 436 VVITASGD-----KTIKIWSISDGSCL--KTFEGHTSSVLRASFLTRGAQIVSCGAD-----GLVKLWTVRTGECIATYD 503 (768)
Q Consensus 436 ~l~t~~~d-----~~i~iwd~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~ 503 (768)
+++.|+.+ ..+.+||+.+.+-. ..+.........+. -+++.++.|+.+ ..+.+||+.+.+-...-.
T Consensus 171 iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 248 (308)
T 1zgk_A 171 LYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCV--LHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAP 248 (308)
T ss_dssp EEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCC
T ss_pred EEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEE--ECCEEEEEeCCCCCCccceEEEEeCCCCcEEECCC
Confidence 77777654 45889998765422 11111111111122 266677777664 468999998876443221
Q ss_pred cCC--CcEEEEEEcCCCCEEEEEeCCC-----cEEEEEcCC
Q 004214 504 KHE--DKIWALAVGKKTEMFATGGSDA-----LVNLWHDST 537 (768)
Q Consensus 504 ~~~--~~v~~l~~s~~~~~l~s~~~dg-----~v~vw~~~~ 537 (768)
... .....+.+ +++.++.||.++ .+.+||+.+
T Consensus 249 ~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~ 287 (308)
T 1zgk_A 249 MKHRRSALGITVH--QGRIYVLGGYDGHTFLDSVECYDPDT 287 (308)
T ss_dssp CSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTT
T ss_pred CCCCccceEEEEE--CCEEEEEcCcCCCcccceEEEEcCCC
Confidence 111 11122222 677777777543 467777665
No 323
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=96.86 E-value=0.57 Score=48.80 Aligned_cols=264 Identities=12% Similarity=0.069 Sum_probs=148.9
Q ss_pred EEEEEeCCCcEEEEECCCceeeeeeeC------------------------------CccceEEEeeeeecCCCEEEEEE
Q 004214 254 YLAVATNIEQVQVYDLSSMSCSYVLAG------------------------------HSEIVLCLDTCALSSGKILIVTG 303 (768)
Q Consensus 254 ~l~~~~~~~~i~i~d~~~~~~~~~~~~------------------------------~~~~v~~l~~~~~~~~~~~l~~~ 303 (768)
.+.+|+.+|+|+++-+.+++.+..+.- |......-. -.-+|+++++-.
T Consensus 72 ~f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~td--g~yDGrylfiNd 149 (638)
T 3sbq_A 72 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTD--GKYDGKYLFIND 149 (638)
T ss_dssp EEEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEET--TEEEEEEEEEEE
T ss_pred EEeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccC--CeeeeEEEEEec
Confidence 466778899999999999987765531 111111111 112344544444
Q ss_pred eCCCeEEEEeCCCceEEEeee-cccCcEEEEEEe--cCCCcEEEEEeCCCeEEEEeCCCCCCCC-ccccccceeeEeec-
Q 004214 304 SKDNSVRLWDSESRCCVGVGT-GHMGAVGAVAFS--KKLQNFLVSGSSDHTIKVWSFDGLSDDA-EQPMNLKAKAVVAA- 378 (768)
Q Consensus 304 ~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~--~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~- 378 (768)
-.+..|-..++...++-..+. .....+..+++- |+ ..++++++....= += ..+.... ..+...........
T Consensus 150 kan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~-T~yv~~~~e~~~P-~p--ndg~~~~~~~~~~y~~f~~iD~~ 225 (638)
T 3sbq_A 150 KANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPH-TKYVFANAEFIIP-HP--NDGKVFDLQDENSYTMYNAIDAE 225 (638)
T ss_dssp TTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSB-CCEEEEEECSCEE-SS--CSSSCCCTTSTTEEEEEEEEETT
T ss_pred CCCcceEEEECCcEeeceeEeCCCCcCcccccccccCC-ccEEEecceeecc-CC--CCCcccccCChhhceEEEEEcCC
Confidence 456788888888877766554 345678888886 55 4477777653211 00 0000000 00000000000001
Q ss_pred ---------cCCCeEEEEEccCCCEEEEEeCCC---------------cEEEEeCC-------CC-----c--eEEEEec
Q 004214 379 ---------HGKDINSLAVAPNDSLVCTGSQDR---------------TACVWRLP-------DL-----V--SVVTFRG 420 (768)
Q Consensus 379 ---------~~~~i~~~~~s~~~~~l~~~~~dg---------------~i~i~d~~-------~~-----~--~~~~~~~ 420 (768)
-......+..+++|++.++.+.+. .+.++++. .+ . -+..+.+
T Consensus 226 tm~v~~Qv~v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~ 305 (638)
T 3sbq_A 226 TMEMAFQVIVDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDG 305 (638)
T ss_dssp TCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEEC
T ss_pred ccEEEEEEEcCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEcc
Confidence 122333455677888888877652 25555531 00 0 1112222
Q ss_pred ---------------cCCCeEEEEEccCCCEEEEee-CCCcEEEEeCCCC------ce-------eEEeecCCCcEEEEE
Q 004214 421 ---------------HKRGIWSVEFSPVDQVVITAS-GDKTIKIWSISDG------SC-------LKTFEGHTSSVLRAS 471 (768)
Q Consensus 421 ---------------~~~~v~~v~~s~~~~~l~t~~-~d~~i~iwd~~~~------~~-------~~~~~~~~~~v~~~~ 471 (768)
-......+.++|||+++++++ .+.++.++|+... +. ....+ -.-.....+
T Consensus 306 ~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~ 384 (638)
T 3sbq_A 306 RKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTT 384 (638)
T ss_dssp SCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEE
T ss_pred ccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEE
Confidence 223345688999999888766 4789999998731 11 22222 234567789
Q ss_pred EEeCCCEEEEEeCCCcEEEEECCCC----------eEEEEeccCCCcEEEEEE------cCCCCEEEEEe
Q 004214 472 FLTRGAQIVSCGADGLVKLWTVRTG----------ECIATYDKHEDKIWALAV------GKKTEMFATGG 525 (768)
Q Consensus 472 ~s~~~~~l~s~~~dg~i~iwd~~~~----------~~~~~~~~~~~~v~~l~~------s~~~~~l~s~~ 525 (768)
|.++|+-..+-.-|..|.-|++... ..+..+..|-.+-- +.. .|+|++|++..
T Consensus 385 Fd~~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH-~~~~~get~~~dGk~lv~ln 453 (638)
T 3sbq_A 385 FDGRGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGH-LHASLCETNEADGKWLVALS 453 (638)
T ss_dssp ECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEE-EEETTTTSTTCCSCEEEEEE
T ss_pred ECCCCceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCcc-cccCCCccCCCCccEEEEec
Confidence 9999955555567999999999753 46666766654432 222 57888888865
No 324
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.81 E-value=0.51 Score=47.46 Aligned_cols=233 Identities=13% Similarity=0.127 Sum_probs=125.0
Q ss_pred ceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCce-EEEee---ecccCcEEEEEEecC---CCcEEEEEeC---C----
Q 004214 284 IVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC-CVGVG---TGHMGAVGAVAFSKK---LQNFLVSGSS---D---- 349 (768)
Q Consensus 284 ~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~---~~~~~~v~~~~~~~~---~~~~l~s~~~---d---- 349 (768)
....++ +.+++. ++.+..+|.|++++. ++. .+..+ .........++++|+ +..+.++-+. +
T Consensus 30 ~P~~ia--~~pdG~--l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~ 104 (354)
T 3a9g_A 30 VPWSIA--PLGGGR--YLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIR 104 (354)
T ss_dssp CEEEEE--EEETTE--EEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEE
T ss_pred CCeEEE--EcCCCe--EEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcc
Confidence 345565 556654 555566799999974 444 22221 112346789999997 4544454442 3
Q ss_pred CeEEEEeCCCCCCCCcccccccee-eEee-ccCCCeEEEEEccCCCEEEEEeC-------------CCcEEEEeCCCC--
Q 004214 350 HTIKVWSFDGLSDDAEQPMNLKAK-AVVA-AHGKDINSLAVAPNDSLVCTGSQ-------------DRTACVWRLPDL-- 412 (768)
Q Consensus 350 g~i~iwd~~~~~~~~~~~~~~~~~-~~~~-~~~~~i~~~~~s~~~~~l~~~~~-------------dg~i~i~d~~~~-- 412 (768)
+.|..|+......... ..+.. .... ........++|.|+|.++++.+. .|.|..++....
T Consensus 105 ~~v~r~~~~~~~~~~~---~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p 181 (354)
T 3a9g_A 105 NRVIRGRLDGSTFKLK---EVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPP 181 (354)
T ss_dssp EEEEEEEECSSSCCEE---EEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCC
T ss_pred eEEEEEEECCCCcCcC---ccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCC
Confidence 5677777653210000 00111 1011 11123467999999987776432 245655554321
Q ss_pred ------ceEEEEeccCCCeEEEEEcc-CCCEEEEeeCCC---cEEEEeCCC--------C--------ceeEEeecCCCc
Q 004214 413 ------VSVVTFRGHKRGIWSVEFSP-VDQVVITASGDK---TIKIWSISD--------G--------SCLKTFEGHTSS 466 (768)
Q Consensus 413 ------~~~~~~~~~~~~v~~v~~s~-~~~~l~t~~~d~---~i~iwd~~~--------~--------~~~~~~~~~~~~ 466 (768)
.......++. ....++|+| +++++++-.... .|.+..--. + .++..+......
T Consensus 182 ~~npf~~~~i~a~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~a 260 (354)
T 3a9g_A 182 ADNPFPNSPIWSYGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWA 260 (354)
T ss_dssp TTSSSTTCCEEEECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCC
T ss_pred CCCCCCCCcEEEEccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcC
Confidence 1111123343 346899999 677665543322 233322100 0 123333122345
Q ss_pred EEEEEEE-------eCCCEEEEEeCCCcEEEEECCCC-eEE--EEe-ccCCCcEEEEEEcCCCCEEEEEe
Q 004214 467 VLRASFL-------TRGAQIVSCGADGLVKLWTVRTG-ECI--ATY-DKHEDKIWALAVGKKTEMFATGG 525 (768)
Q Consensus 467 v~~~~~s-------~~~~~l~s~~~dg~i~iwd~~~~-~~~--~~~-~~~~~~v~~l~~s~~~~~l~s~~ 525 (768)
...+.|. .+|.++++.-..+.|...++... +.. ..+ ......+..+++.|||.++++..
T Consensus 261 p~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 261 PSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp EEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred CcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 7788884 46766666666778888888753 332 233 22245789999999998777764
No 325
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.75 E-value=0.12 Score=51.27 Aligned_cols=141 Identities=11% Similarity=0.168 Sum_probs=72.1
Q ss_pred CCCEEEEEeCC-------CcEEEEeCCCCceEEE--EeccCCCeEEEEEccCCCEEEEeeC------CCcEEEEeCCCCc
Q 004214 391 NDSLVCTGSQD-------RTACVWRLPDLVSVVT--FRGHKRGIWSVEFSPVDQVVITASG------DKTIKIWSISDGS 455 (768)
Q Consensus 391 ~~~~l~~~~~d-------g~i~i~d~~~~~~~~~--~~~~~~~v~~v~~s~~~~~l~t~~~------d~~i~iwd~~~~~ 455 (768)
++++++.|+.+ ..+.+||+.+.+-... +......- +++. .++.+++.|+. -..+.+||+.+.+
T Consensus 109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~ 186 (318)
T 2woz_A 109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGH-NVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGD 186 (318)
T ss_dssp TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESC-EEEE-ETTEEEEECCEESSSCBCCCEEEEETTTTE
T ss_pred CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCccccc-EEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCCE
Confidence 67788888764 2478888876543221 11111111 2222 45777777764 2358999987764
Q ss_pred eeEE--eecCCCcEEEEEEEeCCCEEEEEeCC-----CcEEEEECCCCeEEEE--eccCCCcEEEEEEcCCCCEEEEEeC
Q 004214 456 CLKT--FEGHTSSVLRASFLTRGAQIVSCGAD-----GLVKLWTVRTGECIAT--YDKHEDKIWALAVGKKTEMFATGGS 526 (768)
Q Consensus 456 ~~~~--~~~~~~~v~~~~~s~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~--~~~~~~~v~~l~~s~~~~~l~s~~~ 526 (768)
-... +....... +++ .-+++.++.|+.+ ..+.+||+.+.+-... +.........+. -++..++.||.
T Consensus 187 W~~~~~~p~~r~~~-~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~ 262 (318)
T 2woz_A 187 WKDLAPMKTPRSMF-GVA-IHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVS--LAGSLYAIGGF 262 (318)
T ss_dssp EEEECCCSSCCBSC-EEE-EETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEE--ETTEEEEECCB
T ss_pred EEECCCCCCCcccc-eEE-EECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEE--ECCEEEEECCe
Confidence 2221 11111111 122 2366677777653 2477899887654332 111111112222 25677777775
Q ss_pred C--------------CcEEEEEcCC
Q 004214 527 D--------------ALVNLWHDST 537 (768)
Q Consensus 527 d--------------g~v~vw~~~~ 537 (768)
+ ..+.+||+.+
T Consensus 263 ~~~~~~~~~~~~~~~~~v~~yd~~~ 287 (318)
T 2woz_A 263 AMIQLESKEFAPTEVNDIWKYEDDK 287 (318)
T ss_dssp CCBC----CCBCCBCCCEEEEETTT
T ss_pred eccCCCCceeccceeeeEEEEeCCC
Confidence 4 3467777665
No 326
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.72 E-value=0.13 Score=50.96 Aligned_cols=226 Identities=10% Similarity=0.089 Sum_probs=106.5
Q ss_pred EEEEEeCCCcEEEEECCCceeee-eeeCCccc-eEEEeeeeecCCCEEEEEEeC-----C------CeEEEEeCCCceEE
Q 004214 254 YLAVATNIEQVQVYDLSSMSCSY-VLAGHSEI-VLCLDTCALSSGKILIVTGSK-----D------NSVRLWDSESRCCV 320 (768)
Q Consensus 254 ~l~~~~~~~~i~i~d~~~~~~~~-~~~~~~~~-v~~l~~~~~~~~~~~l~~~~~-----d------g~i~iwd~~~~~~~ 320 (768)
+++.|+ ..+..||..+.+-.. .++..... -.++ ...++. +++.|+. . ..+..||..+++..
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~---~~~~~~-iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~ 80 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSL---VTKENQ-VFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWL 80 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEE---ECTTCC-EEEEEEEEECSSCSSSCEEEEEEEEETTTTEEE
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEE---EEECCE-EEEEcCcccCCCCCccccccceEEecCCCCeEE
Confidence 344444 578999998876432 11111111 1122 223444 4666662 1 12778898887654
Q ss_pred EeeecccCcE-EEEEEecCCCcEEEEEeCC--------CeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccC
Q 004214 321 GVGTGHMGAV-GAVAFSKKLQNFLVSGSSD--------HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN 391 (768)
Q Consensus 321 ~~~~~~~~~v-~~~~~~~~~~~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 391 (768)
.......... .+++.. + ..+++.|+.+ ..+.+||..... .............. ++ ...+
T Consensus 81 ~~~~~p~~r~~~~~~~~-~-~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~--------W~~~~~~p~~r~~~-~~-~~~~ 148 (315)
T 4asc_A 81 GMPPLPSPRCLFGLGEA-L-NSIYVVGGREIKDGERCLDSVMCYDRLSFK--------WGESDPLPYVVYGH-TV-LSHM 148 (315)
T ss_dssp ECCCBSSCEESCEEEEE-T-TEEEEECCEESSTTCCBCCCEEEEETTTTE--------EEECCCCSSCCBSC-EE-EEET
T ss_pred ECCCCCcchhceeEEEE-C-CEEEEEeCCcCCCCCcccceEEEECCCCCc--------EeECCCCCCcccce-eE-EEEC
Confidence 3322111111 112222 3 3466666632 457788876431 00000000001111 12 2246
Q ss_pred CCEEEEEeC-C-----CcEEEEeCCCCceEE--EEeccCCCeEEEEEccCCCEEEEeeCCC-----cEEEEeCCCCceeE
Q 004214 392 DSLVCTGSQ-D-----RTACVWRLPDLVSVV--TFRGHKRGIWSVEFSPVDQVVITASGDK-----TIKIWSISDGSCLK 458 (768)
Q Consensus 392 ~~~l~~~~~-d-----g~i~i~d~~~~~~~~--~~~~~~~~v~~v~~s~~~~~l~t~~~d~-----~i~iwd~~~~~~~~ 458 (768)
+++++.|+. + ..+.+||+.+.+-.. .+......-.++.+ ++++++.|+.++ .+.+||+.+.+-..
T Consensus 149 ~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~ 226 (315)
T 4asc_A 149 DLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWAP 226 (315)
T ss_dssp TEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEEE
T ss_pred CEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEEE
Confidence 677788776 2 368899987754222 11111111122222 577777777654 58889987764222
Q ss_pred EeecCCCcEEEEEEEeCCCEEEEEeCCC--------------cEEEEECCCCeEE
Q 004214 459 TFEGHTSSVLRASFLTRGAQIVSCGADG--------------LVKLWTVRTGECI 499 (768)
Q Consensus 459 ~~~~~~~~v~~~~~s~~~~~l~s~~~dg--------------~i~iwd~~~~~~~ 499 (768)
.-..........+..-+++.++.|+.++ .+.+||+.+.+-.
T Consensus 227 ~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~ 281 (315)
T 4asc_A 227 FEAFPQERSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWE 281 (315)
T ss_dssp ECCCSSCCBSCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEE
T ss_pred CCCCCCcccceeEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCChhh
Confidence 1111111111112223666777776532 3677888776543
No 327
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.69 E-value=0.62 Score=46.82 Aligned_cols=232 Identities=12% Similarity=0.066 Sum_probs=117.8
Q ss_pred ceeEEEEecCCCCEEEEEeCCCcEEEEECCCceee--eeee---CCccceEEEeeeeecC---CCEEEEEEeCC-----C
Q 004214 241 EILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCS--YVLA---GHSEIVLCLDTCALSS---GKILIVTGSKD-----N 307 (768)
Q Consensus 241 ~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~--~~~~---~~~~~v~~l~~~~~~~---~~~~l~~~~~d-----g 307 (768)
....++|.+ ++. +.++...|.|++++ .+... ..+. ........++ +.++ ++.+.++-... +
T Consensus 32 ~P~~ia~~p-dG~-l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia--~~pdf~~~g~lYv~~~~~~~~~~~ 105 (352)
T 2ism_A 32 VPWALAFLP-DGG-MLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLA--LHPRFPQEPYVYAYRTVAEGGLRN 105 (352)
T ss_dssp CEEEEEECT-TSC-EEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEE--ECTTTTTSCEEEEEEEECTTSSEE
T ss_pred CceEEEEcC-CCe-EEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEE--ECCCCCCCCEEEEEEecCCCCCcc
Confidence 456888875 444 55556669999998 33321 1111 1234556665 5565 45544544432 6
Q ss_pred eEEEEeCCCce-----E-EEeee---cccCcEEEEEEecCCCcEEEEEeC-------------CCeEEEEeCCCCCCCCc
Q 004214 308 SVRLWDSESRC-----C-VGVGT---GHMGAVGAVAFSKKLQNFLVSGSS-------------DHTIKVWSFDGLSDDAE 365 (768)
Q Consensus 308 ~i~iwd~~~~~-----~-~~~~~---~~~~~v~~~~~~~~~~~~l~s~~~-------------dg~i~iwd~~~~~~~~~ 365 (768)
.|..|+...+. . +..+. ........++|.|+|. +.++.+. .|.|.-++.+..- ...
T Consensus 106 ~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~-p~~ 183 (352)
T 2ism_A 106 QVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM-LYVTTGEVYERELAQDLASLGGKILRLTPEGEP-APG 183 (352)
T ss_dssp EEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC-EEEECCCTTCGGGGGCTTCSSSEEEEECTTSSB-CTT
T ss_pred EEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC-EEEEECCCCCCccccCCCCCceEEEEEcCCCCC-CCC
Confidence 78888876431 1 11122 1112236899999985 4444332 1455555544210 000
Q ss_pred cccc----cceeeEeeccCCCeEEEEEcc-CCCEEEEEeCCCc--------EEEEeCCC----------------CceEE
Q 004214 366 QPMN----LKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQDRT--------ACVWRLPD----------------LVSVV 416 (768)
Q Consensus 366 ~~~~----~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~--------i~i~d~~~----------------~~~~~ 416 (768)
.+.. ........++ .....++|+| ++.++++-..... |.+..... ..+..
T Consensus 184 npf~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~ 262 (352)
T 2ism_A 184 NPFLGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLY 262 (352)
T ss_dssp CTTTTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSE
T ss_pred CcccCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeE
Confidence 0000 0111112222 3357789999 6666555433333 33322111 01222
Q ss_pred EEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCce------eEEeecCCCcEEEEEEEeCCCEEEEEe
Q 004214 417 TFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSC------LKTFEGHTSSVLRASFLTRGAQIVSCG 483 (768)
Q Consensus 417 ~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~------~~~~~~~~~~v~~~~~s~~~~~l~s~~ 483 (768)
.+ .+......++| .+|.++++....+.|...++..... ...+......+..+++.|||...++..
T Consensus 263 ~~-~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 263 FW-PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp EC-TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred ec-CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence 22 22234567777 4677777666667788777754321 122222345788899999987666553
No 328
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.65 E-value=0.11 Score=51.40 Aligned_cols=226 Identities=12% Similarity=0.140 Sum_probs=108.9
Q ss_pred CCCEEEEEeC----CCcEEEEECCCceeeee--eeCCccceEEEeeeeecCCCEEEEEEeC----C-----CeEEEEeCC
Q 004214 251 EEQYLAVATN----IEQVQVYDLSSMSCSYV--LAGHSEIVLCLDTCALSSGKILIVTGSK----D-----NSVRLWDSE 315 (768)
Q Consensus 251 ~~~~l~~~~~----~~~i~i~d~~~~~~~~~--~~~~~~~v~~l~~~~~~~~~~~l~~~~~----d-----g~i~iwd~~ 315 (768)
++.+++.|+. ...+.+||..+.+-... ++...... ++ ... ++.+++.|+. + ..+.+||..
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~---~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~d~~ 98 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGL-AG---CVV-GGLLYAVGGRNNSPDGNTDSSALDCYNPM 98 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSC-EE---EEE-TTEEEEECCEEEETTEEEECCCEEEEETT
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccc-eE---EEE-CCEEEEECCCcCCCCCCeecceEEEECCC
Confidence 3445555542 24688888877654332 11111111 11 112 3444666654 2 468899998
Q ss_pred CceEEEeeeccc--CcEEEEEEecCCCcEEEEEeCC-----CeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEE
Q 004214 316 SRCCVGVGTGHM--GAVGAVAFSKKLQNFLVSGSSD-----HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAV 388 (768)
Q Consensus 316 ~~~~~~~~~~~~--~~v~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 388 (768)
+.+......... ..-.++.+ + ..+++.|+.+ ..+..||.....- ..............++.+
T Consensus 99 ~~~W~~~~~~p~~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~~~~yd~~~~~W--------~~~~~~p~~r~~~~~~~~ 167 (308)
T 1zgk_A 99 TNQWSPCAPMSVPRNRIGVGVI--D-GHIYAVGGSHGCIHHNSVERYEPERDEW--------HLVAPMLTRRIGVGVAVL 167 (308)
T ss_dssp TTEEEECCCCSSCCBTCEEEEE--T-TEEEEECCEETTEECCCEEEEETTTTEE--------EECCCCSSCCBSCEEEEE
T ss_pred CCeEeECCCCCcCccccEEEEE--C-CEEEEEcCCCCCcccccEEEECCCCCeE--------eECCCCCccccceEEEEE
Confidence 876544322111 11122222 3 3366666543 3577788764311 000000000111122222
Q ss_pred ccCCCEEEEEeCC-----CcEEEEeCCCCceEE--EEeccCCCeEEEEEccCCCEEEEeeCC-----CcEEEEeCCCCce
Q 004214 389 APNDSLVCTGSQD-----RTACVWRLPDLVSVV--TFRGHKRGIWSVEFSPVDQVVITASGD-----KTIKIWSISDGSC 456 (768)
Q Consensus 389 s~~~~~l~~~~~d-----g~i~i~d~~~~~~~~--~~~~~~~~v~~v~~s~~~~~l~t~~~d-----~~i~iwd~~~~~~ 456 (768)
++++++.|+.+ ..+.+||+.+.+-.. .+........++.+ ++++++.|+.+ ..+.+||+.+.+-
T Consensus 168 --~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 243 (308)
T 1zgk_A 168 --NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETW 243 (308)
T ss_dssp --TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred --CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcE
Confidence 67777887754 358899987654221 11111111222333 57777777654 5689999877642
Q ss_pred eE--EeecCCCcEEEEEEEeCCCEEEEEeCCC-----cEEEEECCCCeE
Q 004214 457 LK--TFEGHTSSVLRASFLTRGAQIVSCGADG-----LVKLWTVRTGEC 498 (768)
Q Consensus 457 ~~--~~~~~~~~v~~~~~s~~~~~l~s~~~dg-----~i~iwd~~~~~~ 498 (768)
.. .+....... +++ .-+++.++.|+.++ .+.+||+.+.+-
T Consensus 244 ~~~~~~p~~r~~~-~~~-~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 290 (308)
T 1zgk_A 244 TFVAPMKHRRSAL-GIT-VHQGRIYVLGGYDGHTFLDSVECYDPDTDTW 290 (308)
T ss_dssp EECCCCSSCCBSC-EEE-EETTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred EECCCCCCCccce-EEE-EECCEEEEEcCcCCCcccceEEEEcCCCCEE
Confidence 21 121111111 122 23666777777543 577888877653
No 329
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.59 E-value=0.039 Score=54.64 Aligned_cols=232 Identities=10% Similarity=0.057 Sum_probs=123.0
Q ss_pred EEEEEeCCCeEEEEeCCCceEEEeeecc-cCcEEEEEEe--cCCCcEEEEE-eCCCeEEEEeCCCCCCCCccccccceee
Q 004214 299 LIVTGSKDNSVRLWDSESRCCVGVGTGH-MGAVGAVAFS--KKLQNFLVSG-SSDHTIKVWSFDGLSDDAEQPMNLKAKA 374 (768)
Q Consensus 299 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~--~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 374 (768)
+++.++.||.|.-+|..+|+....+... ..++....-. +.+...++.. +.||.+..++...+... .+.....
T Consensus 12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~--~~~~~~~-- 87 (339)
T 2be1_A 12 ILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQK--LPLSIRQ-- 87 (339)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEE--EEEEHHH--
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEE--eeecccc--
Confidence 4889999999999999999999887754 1222221100 1112233333 58999999987643110 0000000
Q ss_pred EeeccCCCeEE---EEE-c----cCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCC-C------eEEEEEc-----cCC
Q 004214 375 VVAAHGKDINS---LAV-A----PNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKR-G------IWSVEFS-----PVD 434 (768)
Q Consensus 375 ~~~~~~~~i~~---~~~-s----~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~------v~~v~~s-----~~~ 434 (768)
.....++.. ..+ . ..+..+++|+.+|.+...|+.+|+.+..+..... . ..|.... ..+
T Consensus 88 --lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~ 165 (339)
T 2be1_A 88 --LVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECE 165 (339)
T ss_dssp --HHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------C
T ss_pred --ceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCC
Confidence 001111211 000 0 1456788999999999999999999998864321 0 1111111 123
Q ss_pred CEEEEeeCCCcEEEEeCCCCceeEEee-----cCCCc--EE-EEEEEeCCCEEEEEeCCCcEEEEECCCCeEEE-EeccC
Q 004214 435 QVVITASGDKTIKIWSISDGSCLKTFE-----GHTSS--VL-RASFLTRGAQIVSCGADGLVKLWTVRTGECIA-TYDKH 505 (768)
Q Consensus 435 ~~l~t~~~d~~i~iwd~~~~~~~~~~~-----~~~~~--v~-~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~ 505 (768)
..++.+..+..+.+.+ ++|+ +..+. .+... +. .-.++.++.+ +.++.||.|.-+|..+|..+. +.. -
T Consensus 166 ~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W~~~~-l 241 (339)
T 2be1_A 166 NMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARWVSPT-F 241 (339)
T ss_dssp CEEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEEECCC-C
T ss_pred CeEEEecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEEEeec-C
Confidence 5677777777777766 4453 22111 10000 00 0000123555 457888889888888888766 322 2
Q ss_pred CCcEE--------------EEEEcC----------CCCEEEEEeCCCcEEEEEcCCHHH
Q 004214 506 EDKIW--------------ALAVGK----------KTEMFATGGSDALVNLWHDSTAAE 540 (768)
Q Consensus 506 ~~~v~--------------~l~~s~----------~~~~l~s~~~dg~v~vw~~~~~~~ 540 (768)
.+++. -+.-.| ++..++..+.+|.+.-+....-..
T Consensus 242 ~sPv~~~~dv~~~~~~g~~v~~~~P~~~~~~~~~~~~~v~v~~t~~G~~~Als~~~yp~ 300 (339)
T 2be1_A 242 PGIIVGLFDVFNDLRTNENILVPHPFNPGDHESISSNKVYLDQTSNLSWFALSSQNFPS 300 (339)
T ss_dssp SSCEEEEEEEEEETTTTEEEEEECCCCC--------CCEEEEECTTCCEEEEETTTCHH
T ss_pred CCCeEEEEEEEEecCCCCEEEecCCCcccccccccCCeEEEEECCCCcEEEecCCCCce
Confidence 22322 122233 344455467799999888765443
No 330
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.47 E-value=0.29 Score=57.19 Aligned_cols=243 Identities=11% Similarity=0.143 Sum_probs=135.7
Q ss_pred EEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCc-eee
Q 004214 197 TVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSM-SCS 275 (768)
Q Consensus 197 ~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~-~~~ 275 (768)
..+|.. .+++.-....+.+|++.....- .....+.+|.--.|.++ +.++..+. ..|+-|++... .+.
T Consensus 72 IMnP~~-~iiALrag~~lQiFnl~~k~kl--------ks~~~~e~VvfWkWis~--~~l~lVT~-~aVyHW~~~~~s~P~ 139 (1630)
T 1xi4_A 72 IMNPAS-KVIALKAGKTLQIFNIEMKSKM--------KAHTMTDDVTFWKWISL--NTVALVTD-NAVYHWSMEGESQPV 139 (1630)
T ss_pred ccCCCc-ceEEEecCCeEEEeehHHhhhh--------cccccCCCceEEEecCC--CeeEEEcC-CeEEEeccCCCCccH
Confidence 344544 4556666889999998754311 11123456777777644 35555554 68999999642 333
Q ss_pred eeeeCC----ccceEEEeeeeecCCCEEEEEEe------CCCeEEEEeCCCceEEEeeecccCcEEEEEEe--cCCCcEE
Q 004214 276 YVLAGH----SEIVLCLDTCALSSGKILIVTGS------KDNSVRLWDSESRCCVGVGTGHMGAVGAVAFS--KKLQNFL 343 (768)
Q Consensus 276 ~~~~~~----~~~v~~l~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~l 343 (768)
+.+.-| ...|.... ..++.++++++|= -.|.+.+|..+.+. .+.+.||.+....+... +....++
T Consensus 140 k~fdR~~~L~~~QIinY~--~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~-sQ~iegha~~F~~~~~~~~~~~~~l~ 216 (1630)
T 1xi4_A 140 KMFDRHSSLAGCQIINYR--TDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLF 216 (1630)
T ss_pred HHHhcchhcccCeeEEee--eCCCCCeEEEEeeccCCCcccceeeeeeccccc-chhhhHhHhhhheeccCCCCCCceEE
Confidence 333333 22333333 6677777666653 35788899877543 33455665554444332 2212233
Q ss_pred EEEeC---CCeEEEEeCCCCCCCCccccccceeeEee---ccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEE
Q 004214 344 VSGSS---DHTIKVWSFDGLSDDAEQPMNLKAKAVVA---AHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVT 417 (768)
Q Consensus 344 ~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 417 (768)
+.+.. .+.+++-++...... ..++..+...... ...+-..++.+++.-..+..-+.-|.+++||+.++..+..
T Consensus 217 ~f~~~~~~g~kLhi~Ei~~~~~~-~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~ 295 (1630)
T 1xi4_A 217 CFAVRGQAGGKLHIIEVGTPPTG-NQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYM 295 (1630)
T ss_pred EEEEecCCCceEEEEecCCCccC-CCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhh
Confidence 32222 268888888543111 1122222222111 2244556888899888888999999999999999988776
Q ss_pred EeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCc
Q 004214 418 FRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGS 455 (768)
Q Consensus 418 ~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~ 455 (768)
-+-...+|...+.++...-++.....|.|.-..+....
T Consensus 296 ~ris~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~ 333 (1630)
T 1xi4_A 296 NRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN 333 (1630)
T ss_pred ccccCCceEEeccCCCCCceEEEcCCceEEEEEEccch
Confidence 55455555544444332223333355555555554433
No 331
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.39 E-value=0.3 Score=49.23 Aligned_cols=140 Identities=15% Similarity=0.091 Sum_probs=88.3
Q ss_pred CCeEEEEeCCCceEEEeeecc----cCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCcc-c--cccceeeEeec
Q 004214 306 DNSVRLWDSESRCCVGVGTGH----MGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQ-P--MNLKAKAVVAA 378 (768)
Q Consensus 306 dg~i~iwd~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~--~~~~~~~~~~~ 378 (768)
++.||.-++......+.+... -..+..+..+|+|. +|+.. .+..|.+-.++.+...... . ..........+
T Consensus 40 ~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~-lLAl~-g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~ 117 (452)
T 3pbp_A 40 DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGD-LLCLF-NDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSID 117 (452)
T ss_dssp TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSS-EEEEE-CSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGG
T ss_pred CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCC-EEEEe-cCCeEEEEEecCccccCcccccccccceeEEEcC
Confidence 467777776643333333332 23578899999977 45444 5668999998843222211 0 01111111111
Q ss_pred -----cCCCeEEEEEcc---CCCEEEEEeCCCcEEEEeCCCC--ceEEEEe---------ccCCCeEEEEEccCCCEEEE
Q 004214 379 -----HGKDINSLAVAP---NDSLVCTGSQDRTACVWRLPDL--VSVVTFR---------GHKRGIWSVEFSPVDQVVIT 439 (768)
Q Consensus 379 -----~~~~i~~~~~s~---~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~---------~~~~~v~~v~~s~~~~~l~t 439 (768)
...+|..+.|+| ++..|++-..|+.|++||+... ++. .+. .....|.+++|.+++-.|..
T Consensus 118 ~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYv 196 (452)
T 3pbp_A 118 EEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYC 196 (452)
T ss_dssp GCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEE
T ss_pred CcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEE
Confidence 256799999999 4678999999999999999752 222 332 12357889999998877776
Q ss_pred ee--CCCcEEE
Q 004214 440 AS--GDKTIKI 448 (768)
Q Consensus 440 ~~--~d~~i~i 448 (768)
.+ ..|.|+-
T Consensus 197 l~~t~~GDIYA 207 (452)
T 3pbp_A 197 LNTTEGGDIFA 207 (452)
T ss_dssp EECTTSCEEEE
T ss_pred EecCCCCCEEE
Confidence 44 7777764
No 332
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.35 E-value=0.3 Score=48.37 Aligned_cols=218 Identities=12% Similarity=0.116 Sum_probs=102.2
Q ss_pred cEEEEECCCceeeee-eeCCc-cceEEEeeeeecCCCEEEEEEeC----CC-------eEEEEeCCCceEEEeeecccCc
Q 004214 263 QVQVYDLSSMSCSYV-LAGHS-EIVLCLDTCALSSGKILIVTGSK----DN-------SVRLWDSESRCCVGVGTGHMGA 329 (768)
Q Consensus 263 ~i~i~d~~~~~~~~~-~~~~~-~~v~~l~~~~~~~~~~~l~~~~~----dg-------~i~iwd~~~~~~~~~~~~~~~~ 329 (768)
.+..||..+.+-... +.... ..-.++ ...++ .+++.|+. ++ .+..||..+.+...........
T Consensus 25 ~~~~yd~~~~~W~~~~~~~~~~r~~~~~---~~~~~-~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r 100 (318)
T 2woz_A 25 AAVAYDPMENECYLTALAEQIPRNHSSI---VTQQN-QVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSAR 100 (318)
T ss_dssp EEEEEETTTTEEEEEEECTTSCSSEEEE---ECSSS-CEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCB
T ss_pred ceEEECCCCCceecccCCccCCccceEE---EEECC-EEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccc
Confidence 478899887765431 11101 111122 22334 44666662 12 2778898887654432211111
Q ss_pred -EEEEEEecCCCcEEEEEeCC-------CeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCC
Q 004214 330 -VGAVAFSKKLQNFLVSGSSD-------HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQD 401 (768)
Q Consensus 330 -v~~~~~~~~~~~~l~s~~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d 401 (768)
-.+++.. + ..+++.|+.+ ..+.+||.....-....+.. .....| +++ ..++++++.|+.+
T Consensus 101 ~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p----~~r~~~-----~~~-~~~~~iyv~GG~~ 168 (318)
T 2woz_A 101 CLFGLGEV-D-DKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLP----IKVYGH-----NVI-SHNGMIYCLGGKT 168 (318)
T ss_dssp CSCEEEEE-T-TEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCS----SCEESC-----EEE-EETTEEEEECCEE
T ss_pred cccceEEE-C-CEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCC----Cccccc-----EEE-EECCEEEEEcCCC
Confidence 1122222 3 3466777653 24677777643110000000 000111 122 2467777777642
Q ss_pred ------CcEEEEeCCCCceEEE--EeccCCCeEEEEEccCCCEEEEeeCC-----CcEEEEeCCCCce--eEEeecCCCc
Q 004214 402 ------RTACVWRLPDLVSVVT--FRGHKRGIWSVEFSPVDQVVITASGD-----KTIKIWSISDGSC--LKTFEGHTSS 466 (768)
Q Consensus 402 ------g~i~i~d~~~~~~~~~--~~~~~~~v~~v~~s~~~~~l~t~~~d-----~~i~iwd~~~~~~--~~~~~~~~~~ 466 (768)
..+.+||+.+.+-... +........++.+ ++++++.|+.+ ..+.+||+.+.+- +..+......
T Consensus 169 ~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~ 246 (318)
T 2woz_A 169 DDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSS 246 (318)
T ss_dssp SSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBS
T ss_pred CCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccc
Confidence 3589999887643221 1111111122222 56777777643 3577899876542 2222111111
Q ss_pred EEEEEEEeCCCEEEEEeCC--------------CcEEEEECCCCeEEE
Q 004214 467 VLRASFLTRGAQIVSCGAD--------------GLVKLWTVRTGECIA 500 (768)
Q Consensus 467 v~~~~~s~~~~~l~s~~~d--------------g~i~iwd~~~~~~~~ 500 (768)
. .+...+++.++.|+.+ ..+.+||+.+.+-..
T Consensus 247 ~--~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~ 292 (318)
T 2woz_A 247 I--SLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAG 292 (318)
T ss_dssp C--EEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEE
T ss_pred e--EEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehh
Confidence 1 1223356677777653 357788887765443
No 333
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.34 E-value=0.96 Score=44.92 Aligned_cols=239 Identities=12% Similarity=0.090 Sum_probs=126.5
Q ss_pred ccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEe--e----ecccCcEEEEEEecC---CCcEEEEEe--CCC
Q 004214 282 SEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGV--G----TGHMGAVGAVAFSKK---LQNFLVSGS--SDH 350 (768)
Q Consensus 282 ~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~----~~~~~~v~~~~~~~~---~~~~l~s~~--~dg 350 (768)
-.....++ +.+++. ++++-...|.|++++..++..... + .........++++|+ +..+.++-+ .++
T Consensus 31 L~~P~~ia--~~pdG~-llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~ 107 (347)
T 3das_A 31 LNSPWGLA--PLPGGD-LLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDN 107 (347)
T ss_dssp CSSEEEEE--ECTTSC-EEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSE
T ss_pred CCCceEEE--EcCCCc-EEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCC
Confidence 34455665 666665 355544489999998765543221 1 123456789999985 233333322 345
Q ss_pred eEEEEeCCCCCCCCccccccceee--EeeccCCCeEEEEEccCCCEEEEEeC-------------CCcEEEEeCCCC---
Q 004214 351 TIKVWSFDGLSDDAEQPMNLKAKA--VVAAHGKDINSLAVAPNDSLVCTGSQ-------------DRTACVWRLPDL--- 412 (768)
Q Consensus 351 ~i~iwd~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~s~~~~~l~~~~~-------------dg~i~i~d~~~~--- 412 (768)
.|.-|.+................. ...........|+|.|+|.+.++.+. .|.|.-++....
T Consensus 108 ~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~ 187 (347)
T 3das_A 108 RIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAP 187 (347)
T ss_dssp EEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCT
T ss_pred EEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccC
Confidence 566566654211000000111111 11112223467999999987777542 345555554422
Q ss_pred -----ceEEEEeccCCCeEEEEEccCCCEEEEee-CCCcEEEEeCCCCc------------------eeEEeecCCCcEE
Q 004214 413 -----VSVVTFRGHKRGIWSVEFSPVDQVVITAS-GDKTIKIWSISDGS------------------CLKTFEGHTSSVL 468 (768)
Q Consensus 413 -----~~~~~~~~~~~~v~~v~~s~~~~~l~t~~-~d~~i~iwd~~~~~------------------~~~~~~~~~~~v~ 468 (768)
.....-.+|. ....++|+|+|.+.++=. .|+.=.|--+..|. ++..+..+.....
T Consensus 188 ~nPf~~~~i~a~G~R-Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~ 266 (347)
T 3das_A 188 GNPFPGSPVYSYGHR-NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPS 266 (347)
T ss_dssp TCSSTTCCEEEBCCS-BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEE
T ss_pred CCCCCCCeEEeeCCC-CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCc
Confidence 1111122443 456899999887666532 22222222222221 2333333334667
Q ss_pred EEEEEeCCCEEEEEeCCCcEEEEECCCCeE----EEEeccCCCcEEEEEEcCCCCEEEEEe
Q 004214 469 RASFLTRGAQIVSCGADGLVKLWTVRTGEC----IATYDKHEDKIWALAVGKKTEMFATGG 525 (768)
Q Consensus 469 ~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~l~~s~~~~~l~s~~ 525 (768)
.++|. +|..++..-..+.|....+..+.. ...+.+...++..++..|||.++++..
T Consensus 267 G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 267 GIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp EEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred ceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 78876 455555555556666666654432 233444457899999999998777654
No 334
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.27 E-value=0.058 Score=48.92 Aligned_cols=145 Identities=11% Similarity=0.025 Sum_probs=87.0
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCce------EEEEe--ccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCC
Q 004214 381 KDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVS------VVTFR--GHKRGIWSVEFSPVDQVVITASGDKTIKIWSIS 452 (768)
Q Consensus 381 ~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~------~~~~~--~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~ 452 (768)
..+..++|+|+|.+.++ .+|.++-.+..+... -..+- +-. ...++.|.|+|.+.++ .||.|+-++-.
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~-~F~a~~fD~~G~LYav--~dG~iyr~~pP 115 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWN-QFQFLFFDPNGYLYAV--SKDKLYKASPP 115 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGG-GCSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccc-cceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence 46789999999987777 677777777654211 11111 111 2478999999998887 55999888753
Q ss_pred CCcee------EEe-ecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCe------EEEEec-cCCCcEEEEEEcCCC
Q 004214 453 DGSCL------KTF-EGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE------CIATYD-KHEDKIWALAVGKKT 518 (768)
Q Consensus 453 ~~~~~------~~~-~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~------~~~~~~-~~~~~v~~l~~s~~~ 518 (768)
+...- ..+ .+--..+..+.|.|+|.+-+.. ||.++-+...++. ....+- ..-..-.-+.|.+++
T Consensus 116 ~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G 193 (236)
T 1tl2_A 116 QSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVG 193 (236)
T ss_dssp CSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTS
T ss_pred cCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCC
Confidence 32111 111 1122467889999999877766 7776544333221 011111 122234457799999
Q ss_pred CEEEEEeCCCcEEEEEcC
Q 004214 519 EMFATGGSDALVNLWHDS 536 (768)
Q Consensus 519 ~~l~s~~~dg~v~vw~~~ 536 (768)
...++. +| ++|...
T Consensus 194 ~l~~v~--~g--~~Y~~~ 207 (236)
T 1tl2_A 194 TLFGVQ--GG--KFYEDY 207 (236)
T ss_dssp CEEEEE--TT--EEEEES
T ss_pred cEEEEe--CC--eEEecC
Confidence 887776 77 555543
No 335
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=95.83 E-value=1.6 Score=45.59 Aligned_cols=71 Identities=8% Similarity=0.063 Sum_probs=52.4
Q ss_pred CcEEEEEEEeCCCEEEEEeC-CCcEEEEECCCC------e-------EEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcE
Q 004214 465 SSVLRASFLTRGAQIVSCGA-DGLVKLWTVRTG------E-------CIATYDKHEDKIWALAVGKKTEMFATGGSDALV 530 (768)
Q Consensus 465 ~~v~~~~~s~~~~~l~s~~~-dg~i~iwd~~~~------~-------~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v 530 (768)
.....+.++|||++++.++. +.++.++|+... + .+.... -.-.....+|.++|....|.--|..|
T Consensus 323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G~aYTtlfidSqv 401 (638)
T 3sbq_A 323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRGNAYTTLFIDSQV 401 (638)
T ss_dssp SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSSEEEEEETTTTEE
T ss_pred CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCCceEeeeeecceE
Confidence 34456788999999987776 779999998742 1 122333 34456788999999766777799999
Q ss_pred EEEEcC
Q 004214 531 NLWHDS 536 (768)
Q Consensus 531 ~vw~~~ 536 (768)
.-|++.
T Consensus 402 vkWni~ 407 (638)
T 3sbq_A 402 VKWNME 407 (638)
T ss_dssp EEEEHH
T ss_pred EEEecc
Confidence 999874
No 336
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=95.64 E-value=0.19 Score=50.80 Aligned_cols=134 Identities=8% Similarity=-0.064 Sum_probs=61.1
Q ss_pred CcEEEEeCCCCceE--EEEeccCCCeEEEEEccCCCEEEEeeC------CCcEEEEeC--CCCc--eeEEeecCCCcEEE
Q 004214 402 RTACVWRLPDLVSV--VTFRGHKRGIWSVEFSPVDQVVITASG------DKTIKIWSI--SDGS--CLKTFEGHTSSVLR 469 (768)
Q Consensus 402 g~i~i~d~~~~~~~--~~~~~~~~~v~~v~~s~~~~~l~t~~~------d~~i~iwd~--~~~~--~~~~~~~~~~~v~~ 469 (768)
..+.+||+.+.+-. ..+......-.+++.. ++++++.|+. ...+.+||+ .+.+ .+..+.........
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~ 246 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGG 246 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSC
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccc
Confidence 46889998776432 2222111111223322 4667777653 245777876 3322 22122111111111
Q ss_pred EEEEeCCCEEEEEeCC----------------------CcEEEEECCCCeE--EEEeccCCCcEEEEEEcCCCCEEEEEe
Q 004214 470 ASFLTRGAQIVSCGAD----------------------GLVKLWTVRTGEC--IATYDKHEDKIWALAVGKKTEMFATGG 525 (768)
Q Consensus 470 ~~~s~~~~~l~s~~~d----------------------g~i~iwd~~~~~~--~~~~~~~~~~v~~l~~s~~~~~l~s~~ 525 (768)
.+...+++.++.|+.+ ..+.+||+.+.+- +..+......-.+ +..+++.++.||
T Consensus 247 ~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~--~~~~~~i~v~GG 324 (357)
T 2uvk_A 247 FAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVS--LPWNNSLLIIGG 324 (357)
T ss_dssp EEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEE--EEETTEEEEEEE
T ss_pred eEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCccccee--EEeCCEEEEEee
Confidence 2333466677777632 2577899887643 3333221111122 234678888888
Q ss_pred CCC------cEEEEEcCCH
Q 004214 526 SDA------LVNLWHDSTA 538 (768)
Q Consensus 526 ~dg------~v~vw~~~~~ 538 (768)
.++ .|.++++.++
T Consensus 325 ~~~~~~~~~~v~~l~~~~~ 343 (357)
T 2uvk_A 325 ETAGGKAVTDSVLITVKDN 343 (357)
T ss_dssp ECGGGCEEEEEEEEEC-CC
T ss_pred eCCCCCEeeeEEEEEEcCc
Confidence 653 2444466554
No 337
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=95.53 E-value=1.6 Score=42.02 Aligned_cols=223 Identities=11% Similarity=-0.000 Sum_probs=113.2
Q ss_pred ceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEE
Q 004214 241 EILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCV 320 (768)
Q Consensus 241 ~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 320 (768)
.|..++.- ..+.+.-+ +|.++.|-....-.+.........|..++ ......++. . ||.|+.|-....-.+
T Consensus 25 ~i~~ia~G---~~h~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia----~G~~hs~~l-~-~G~v~~wG~n~~Gql 94 (282)
T 3qhy_B 25 GVDAIAGG---YFHGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIA----AGNYHSLAL-K-DGEVIAWGGNEDGQT 94 (282)
T ss_dssp SCCEEEEC---SSEEEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEE----ECSSEEEEE-E-TTEEEEEECCTTSTT
T ss_pred CCcEEEeC---CCeEEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEE----eCCCEEEEE-E-CCEEEEeeCCCCCCC
Confidence 45555542 22333335 89999998665332221111223455553 122333444 5 899999976542222
Q ss_pred EeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeC
Q 004214 321 GVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ 400 (768)
Q Consensus 321 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 400 (768)
.....-...|..++.... ..+.-. +|.|..|-......... .......|..++...+.. ++ -.
T Consensus 95 g~P~~~~~~v~~ia~G~~---hs~al~-~G~v~~wG~n~~gqlg~----------~~~~~~~i~~i~~G~~~~-~~-l~- 157 (282)
T 3qhy_B 95 TVPAEARSGVDAIAAGAW---ASYALK-DGKVIAWGDDSDGQTTV----------PAEAQSGVTALDGGVYTA-LA-VK- 157 (282)
T ss_dssp CCCGGGSSSEEEEEEETT---EEEEEE-TTEEEEEECCTTSTTSC----------CGGGGSSEEEEEECSSEE-EE-EE-
T ss_pred CCCcccCCCeEEEECcCC---EEEEEe-CCeEEEecCCCCCcCCC----------CccCCCCeEEEEcccCEE-EE-EE-
Confidence 221222346778877655 344455 99999997654322111 011224566666544332 22 23
Q ss_pred CCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEE
Q 004214 401 DRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIV 480 (768)
Q Consensus 401 dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 480 (768)
||.|+.|-......+..-..-...|..++...... ++. .||.|..|-....-.+..-......|..++..... .++
T Consensus 158 ~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~hs-~al--~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h-~~a 233 (282)
T 3qhy_B 158 NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFHS-LAL--KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWY-SLA 233 (282)
T ss_dssp TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEE-EEE--ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSC-EEE
T ss_pred CCEEEEecCCCCCCCCCceecCCCeEEEEecCCEE-EEE--ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCE-EEE
Confidence 78888887653222111111234577776654333 333 48999999865432221111112345555543332 333
Q ss_pred EEeCCCcEEEEECCCC
Q 004214 481 SCGADGLVKLWTVRTG 496 (768)
Q Consensus 481 s~~~dg~i~iwd~~~~ 496 (768)
.. ||.|+.|-....
T Consensus 234 l~--~g~v~~wG~n~~ 247 (282)
T 3qhy_B 234 LK--NGKVIAWGSSRT 247 (282)
T ss_dssp EE--TTEEEEESTTCC
T ss_pred EE--CCEEEEecCCCC
Confidence 33 899999976543
No 338
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=95.51 E-value=0.38 Score=48.52 Aligned_cols=110 Identities=9% Similarity=0.022 Sum_probs=53.1
Q ss_pred CCCEEEEEeC------CCcEEEEeC--CCCce--EEEEeccCCCeEEEEEccCCCEEEEeeCC-----------------
Q 004214 391 NDSLVCTGSQ------DRTACVWRL--PDLVS--VVTFRGHKRGIWSVEFSPVDQVVITASGD----------------- 443 (768)
Q Consensus 391 ~~~~l~~~~~------dg~i~i~d~--~~~~~--~~~~~~~~~~v~~v~~s~~~~~l~t~~~d----------------- 443 (768)
++++++.|+. ...+..||+ .+.+- +..+........+.+...++++++.|+.+
T Consensus 200 ~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~ 279 (357)
T 2uvk_A 200 GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHE 279 (357)
T ss_dssp TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTT
T ss_pred CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEEECCEEEEEcCccccCCcccccccceeccc
Confidence 5677777664 235777876 33221 11111111111111223356777777632
Q ss_pred -----CcEEEEeCCCCc--eeEEeecCCCcEEEEEEEeCCCEEEEEeCCC------cEEEEECCCCeEEEEe
Q 004214 444 -----KTIKIWSISDGS--CLKTFEGHTSSVLRASFLTRGAQIVSCGADG------LVKLWTVRTGECIATY 502 (768)
Q Consensus 444 -----~~i~iwd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg------~i~iwd~~~~~~~~~~ 502 (768)
..+.+||+.+.+ .+..+......- .+...+++.++.|+.++ .|.++++++++.+...
T Consensus 280 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~--~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~ 349 (357)
T 2uvk_A 280 GLKKSYSTDIHLWHNGKWDKSGELSQGRAYG--VSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQN 349 (357)
T ss_dssp TCCCEECCEEEECC---CEEEEECSSCCBSS--EEEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC
T ss_pred cccceeeEEEEecCCCceeeCCCCCCCcccc--eeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeee
Confidence 257789987653 333333222221 22335777788888653 3555688777765543
No 339
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.46 E-value=0.91 Score=47.37 Aligned_cols=104 Identities=10% Similarity=0.088 Sum_probs=62.7
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEE--EEec------cCCCeEEEEEccC---CCEEEEeeC-------
Q 004214 381 KDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVV--TFRG------HKRGIWSVEFSPV---DQVVITASG------- 442 (768)
Q Consensus 381 ~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~------~~~~v~~v~~s~~---~~~l~t~~~------- 442 (768)
....+|+|.|+|+++++-...+.|++++..++.... .+.. .......|+|+|+ +..|+.+..
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 456899999999977765444578888866554322 2221 2356779999995 444544432
Q ss_pred ------CCcEEEEeCCCC--c-----eeE-Eee-cCCCcEEEEEEEeCCCEEEEEeC
Q 004214 443 ------DKTIKIWSISDG--S-----CLK-TFE-GHTSSVLRASFLTRGAQIVSCGA 484 (768)
Q Consensus 443 ------d~~i~iwd~~~~--~-----~~~-~~~-~~~~~v~~~~~s~~~~~l~s~~~ 484 (768)
...|.-|++..+ . .+. .+. ........++|.|||.+.++.+.
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 235666665332 1 111 122 12235788999999987776553
No 340
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=95.24 E-value=0.82 Score=44.16 Aligned_cols=206 Identities=14% Similarity=0.113 Sum_probs=106.2
Q ss_pred CCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEE
Q 004214 306 DNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINS 385 (768)
Q Consensus 306 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 385 (768)
||.|+.|-....-.+.........|..++.... +.++. . ||.|..|-......... + ..-...|..
T Consensus 41 ~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~--hs~~l-~-~G~v~~wG~n~~Gqlg~-P---------~~~~~~v~~ 106 (282)
T 3qhy_B 41 GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNY--HSLAL-K-DGEVIAWGGNEDGQTTV-P---------AEARSGVDA 106 (282)
T ss_dssp TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSS--EEEEE-E-TTEEEEEECCTTSTTCC-C---------GGGSSSEEE
T ss_pred CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCC--EEEEE-E-CCEEEEeeCCCCCCCCC-C---------cccCCCeEE
Confidence 899999976542222222222345677776554 22333 4 99999997654322111 0 011245777
Q ss_pred EEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCC
Q 004214 386 LAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTS 465 (768)
Q Consensus 386 ~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~ 465 (768)
++...+. .+.-+ ||.|+.|-....-.+..-......|..++......+++ . ||.|..|-....-.+..-..-..
T Consensus 107 ia~G~~h--s~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~~~l--~-~G~v~~wG~n~~gqlg~p~~~~~ 180 (282)
T 3qhy_B 107 IAAGAWA--SYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALAV--K-NGGVIAWGDNYFGQTTVPAEAQS 180 (282)
T ss_dssp EEEETTE--EEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEE--E-TTEEEEEECCTTSTTSCCGGGGS
T ss_pred EECcCCE--EEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEEEEE--E-CCEEEEecCCCCCCCCCceecCC
Confidence 7665443 33334 89999997654222111111234577776654333332 3 69999998654322211111134
Q ss_pred cEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 004214 466 SVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDST 537 (768)
Q Consensus 466 ~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~ 537 (768)
.|..++...+. .++. .||.|+.|-....-.+..-......|..++...... ++. . ||.|..|-.+.
T Consensus 181 ~v~~i~~G~~h-s~al--~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h~-~al-~-~g~v~~wG~n~ 246 (282)
T 3qhy_B 181 GVDDVAGGIFH-SLAL--KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWYS-LAL-K-NGKVIAWGSSR 246 (282)
T ss_dssp SEEEEEECSSE-EEEE--ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSCE-EEE-E-TTEEEEESTTC
T ss_pred CeEEEEecCCE-EEEE--ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCEE-EEE-E-CCEEEEecCCC
Confidence 56666543332 2333 589999997543211111111223466666554333 333 3 89999997654
No 341
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=94.95 E-value=3.4 Score=41.35 Aligned_cols=61 Identities=11% Similarity=0.126 Sum_probs=42.0
Q ss_pred CCCeEEEEEcc-------CCCEEEEEeCCCcEEEEeCCCCceEEE--E-eccCCCeEEEEEccCCCEEEEe
Q 004214 380 GKDINSLAVAP-------NDSLVCTGSQDRTACVWRLPDLVSVVT--F-RGHKRGIWSVEFSPVDQVVITA 440 (768)
Q Consensus 380 ~~~i~~~~~s~-------~~~~l~~~~~dg~i~i~d~~~~~~~~~--~-~~~~~~v~~v~~s~~~~~l~t~ 440 (768)
...+..++|.. +|.++++....+.|...++..++.... + ......+..+++.|+|.+.++.
T Consensus 270 ~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~t 340 (353)
T 2g8s_A 270 SPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLT 340 (353)
T ss_dssp CCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEE
T ss_pred CcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEE
Confidence 34677888864 577777777778888888876544332 2 1233578999999999876654
No 342
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=94.82 E-value=1.1 Score=49.87 Aligned_cols=219 Identities=10% Similarity=0.097 Sum_probs=108.4
Q ss_pred CEEEEEEeCC----CeEEEEeCCCceEEEee-e-----cccC-cEEEEEEec-CCCcEEEEEeCC------CeEEEEeCC
Q 004214 297 KILIVTGSKD----NSVRLWDSESRCCVGVG-T-----GHMG-AVGAVAFSK-KLQNFLVSGSSD------HTIKVWSFD 358 (768)
Q Consensus 297 ~~~l~~~~~d----g~i~iwd~~~~~~~~~~-~-----~~~~-~v~~~~~~~-~~~~~l~s~~~d------g~i~iwd~~ 358 (768)
+.+++.|+.+ ..+.+||..+++..... . .... .-.+++..+ + ..+++.|+.+ ..+.+||..
T Consensus 398 ~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~-~~lyv~GG~~~~~~~~~dv~~yd~~ 476 (695)
T 2zwa_A 398 NDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRN-NQLLLIGGRKAPHQGLSDNWIFDMK 476 (695)
T ss_dssp SCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTT-TEEEEECCBSSTTCBCCCCEEEETT
T ss_pred CEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccC-CEEEEEcCCCCCCCccccEEEEeCC
Confidence 3346666643 46888888877554433 1 1111 112333332 4 3367777654 246777776
Q ss_pred CCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCC--cEEEEeCCCCceEEEE-----eccCCCeEEEEEc
Q 004214 359 GLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDR--TACVWRLPDLVSVVTF-----RGHKRGIWSVEFS 431 (768)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~-----~~~~~~v~~v~~s 431 (768)
... ........ ....-.+++.-.++++++.|+.++ .+.+||..+..-...- ........++.+.
T Consensus 477 t~~--------W~~~~~~p-~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~ 547 (695)
T 2zwa_A 477 TRE--------WSMIKSLS-HTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFD 547 (695)
T ss_dssp TTE--------EEECCCCS-BCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEE
T ss_pred CCc--------EEECCCCC-CCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEe
Confidence 431 11110000 011112233324788888888655 6899998876422211 1111222345556
Q ss_pred cC-CCEEEEeeC--C-----CcEEEEeCCCCce-----eEEeec---CCCcEEEEEEEeCCCEEEEEeCC--------Cc
Q 004214 432 PV-DQVVITASG--D-----KTIKIWSISDGSC-----LKTFEG---HTSSVLRASFLTRGAQIVSCGAD--------GL 487 (768)
Q Consensus 432 ~~-~~~l~t~~~--d-----~~i~iwd~~~~~~-----~~~~~~---~~~~v~~~~~s~~~~~l~s~~~d--------g~ 487 (768)
.+ +.+++.|+. + ..+.+||+.+..- -..+.. ....-.+++...+++.++.||.+ ..
T Consensus 548 ~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 627 (695)
T 2zwa_A 548 PVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNS 627 (695)
T ss_dssp TTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTS
T ss_pred CCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCe
Confidence 55 667777765 2 4588999887761 112211 11111123333447777777743 45
Q ss_pred EEEEECCCCeEEEEeccCCC------c--E-EEEEEcCCCCEEEEEeC
Q 004214 488 VKLWTVRTGECIATYDKHED------K--I-WALAVGKKTEMFATGGS 526 (768)
Q Consensus 488 i~iwd~~~~~~~~~~~~~~~------~--v-~~l~~s~~~~~l~s~~~ 526 (768)
+.+||+.+.+.. ....... + + .+....++++.++.||.
T Consensus 628 v~~yd~~t~~W~-~~~~p~~~~~~~~p~~~gh~~~~~~~g~i~v~GGg 674 (695)
T 2zwa_A 628 IISLDPLSETLT-SIPISRRIWEDHSLMLAGFSLVSTSMGTIHIIGGG 674 (695)
T ss_dssp EEEEETTTTEEE-ECCCCHHHHHHSCCCCSSCEEECC---CEEEECCE
T ss_pred EEEEECCCCeEE-EeeccccccCCCCccceeeeEEEeCCCEEEEEeCC
Confidence 899999887654 2211100 0 0 22334456678777774
No 343
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=94.72 E-value=2.8 Score=41.39 Aligned_cols=121 Identities=9% Similarity=0.055 Sum_probs=71.3
Q ss_pred EEEEEeCCCcEEEEECCCCeeEEEecCc-cceeEEEEE--cCCCCEEEEE--eCCCeEEEEECCCCeeeeeeecceeEee
Q 004214 46 LLFSGSDDATVRVWDLLAKKCVATLDKH-FSRVTSMAI--TSDGSTLISA--GRDKVVNLWDLRDYSCKLTVPTYEMVEA 120 (768)
Q Consensus 46 ~l~sg~~dg~I~iWd~~~~~~~~~l~~h-~~~V~~l~f--s~d~~~L~s~--~~dg~i~vWd~~~~~~~~~~~~~~~v~~ 120 (768)
+++.++.||.|.-.|..+|+.+.+++.. ..++....- .+.+..++.+ ..||.|..++..+|.....+.....+..
T Consensus 12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~~ 91 (339)
T 2be1_A 12 ILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVST 91 (339)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHTT
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccceec
Confidence 4889999999999999999999988754 122222110 0112234433 5899999999998865544433322110
Q ss_pred --EEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCC
Q 004214 121 --VCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSS 178 (768)
Q Consensus 121 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~ 178 (768)
+.. .+..... ..-.......+++++.+|.+...|+.+|........
T Consensus 92 SP~~~--~~~pvv~----------~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~ 139 (339)
T 2be1_A 92 SPLHL--KTNIVVN----------DSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP 139 (339)
T ss_dssp CSEEE--ECC--------------------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred ccccc--CCCceee----------cccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence 110 0000000 000000234789999999999999999966655443
No 344
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=94.71 E-value=0.4 Score=43.49 Aligned_cols=131 Identities=11% Similarity=-0.055 Sum_probs=77.5
Q ss_pred CCEEEEEeCCCcEEEEeCCCCc------eEEEEecc--CCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCcee------
Q 004214 392 DSLVCTGSQDRTACVWRLPDLV------SVVTFRGH--KRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCL------ 457 (768)
Q Consensus 392 ~~~l~~~~~dg~i~i~d~~~~~------~~~~~~~~--~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~------ 457 (768)
..+|.+...| +++.=..++.. ....+ +. =..+..++|+|+|.+.++ .+|.++-.+..+....
T Consensus 4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~i-G~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~ 79 (236)
T 1tl2_A 4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLI-GKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRA 79 (236)
T ss_dssp CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEE-ESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHC
T ss_pred ceEEEEEeCC-cEEecCCCCCcccchhhhcccc-CccccccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccc
Confidence 3455666666 65555554443 12222 22 247789999999987766 5677777776542211
Q ss_pred EEee--cCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEE-------EEeccCCCcEEEEEEcCCCCEEEEEeCCC
Q 004214 458 KTFE--GHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECI-------ATYDKHEDKIWALAVGKKTEMFATGGSDA 528 (768)
Q Consensus 458 ~~~~--~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~-------~~~~~~~~~v~~l~~s~~~~~l~s~~~dg 528 (768)
..+- +-. .-..+.|.|+|.+.++ .||.|+-++..+...- ..-..-=..+..|.+.|+|...++. ||
T Consensus 80 t~IG~~Gw~-~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg 154 (236)
T 1tl2_A 80 KKIGNGGWN-QFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQ 154 (236)
T ss_dssp EEEECSCGG-GCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TT
T ss_pred cEecccccc-cceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CC
Confidence 1110 111 1356888999987777 5698887776432111 1111112467899999999888777 77
Q ss_pred cEE
Q 004214 529 LVN 531 (768)
Q Consensus 529 ~v~ 531 (768)
.+.
T Consensus 155 ~ly 157 (236)
T 1tl2_A 155 QFY 157 (236)
T ss_dssp EEE
T ss_pred cEE
Confidence 644
No 345
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=94.26 E-value=4.9 Score=40.16 Aligned_cols=235 Identities=11% Similarity=0.047 Sum_probs=121.7
Q ss_pred CceeEEEEecCCCCEEEEEeCCCcEEEEECCCce-eeeeee---CCccceEEEeeeeecC---CCEEEEEEeC---C---
Q 004214 240 EEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMS-CSYVLA---GHSEIVLCLDTCALSS---GKILIVTGSK---D--- 306 (768)
Q Consensus 240 ~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~-~~~~~~---~~~~~v~~l~~~~~~~---~~~~l~~~~~---d--- 306 (768)
.....++|.+ ++. +.++...|.|++++. .+. .+..+. ........++ +.++ ++.+.++-+. +
T Consensus 29 ~~P~~ia~~p-dG~-l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia--~~pdf~~~g~lyv~~~~~~~~~~~ 103 (354)
T 3a9g_A 29 EVPWSIAPLG-GGR-YLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLA--LHPEFPKKSWVYLYASYFAEGGHI 103 (354)
T ss_dssp SCEEEEEEEE-TTE-EEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEE--ECTTTTTSCEEEEEEEEECGGGCE
T ss_pred CCCeEEEEcC-CCe-EEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEE--eCCCCCcCCEEEEEEeccCCCCCc
Confidence 3567888876 444 666666799999973 444 111111 1224466675 5565 4554444432 3
Q ss_pred -CeEEEEeCCCc-------eEE-Eeee-cccCcEEEEEEecCCCcEEEEEeC-------------CCeEEEEeCCCCCCC
Q 004214 307 -NSVRLWDSESR-------CCV-GVGT-GHMGAVGAVAFSKKLQNFLVSGSS-------------DHTIKVWSFDGLSDD 363 (768)
Q Consensus 307 -g~i~iwd~~~~-------~~~-~~~~-~~~~~v~~~~~~~~~~~~l~s~~~-------------dg~i~iwd~~~~~~~ 363 (768)
+.|..|+.... +.+ ..+. ........++|.|+|. ++++.+. .|.|.-++.+..- .
T Consensus 104 ~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~-Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~-p 181 (354)
T 3a9g_A 104 RNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM-LYITTGDAADPRLAQDLSSLAGKILRVDEEGRP-P 181 (354)
T ss_dssp EEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC-EEEECCCTTCGGGGTCTTCCSSEEEEECTTSCC-C
T ss_pred ceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc-EEEEECCCCCCccccCCCCCCeEEEEEcCCCCC-C
Confidence 56777776543 111 1122 1112245789999986 4444332 2445555543210 0
Q ss_pred CccccccceeeEeeccCCCeEEEEEcc-CCCEEEEEeCCC---cEEEEeCCC----------------CceEEEEeccCC
Q 004214 364 AEQPMNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQDR---TACVWRLPD----------------LVSVVTFRGHKR 423 (768)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg---~i~i~d~~~----------------~~~~~~~~~~~~ 423 (768)
...+.. .......++ .....++|+| ++.++++-.... .|.+..... ..++..+.....
T Consensus 182 ~~npf~-~~~i~a~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ 259 (354)
T 3a9g_A 182 ADNPFP-NSPIWSYGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETW 259 (354)
T ss_dssp TTSSST-TCCEEEECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCC
T ss_pred CCCCCC-CCcEEEEcc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCc
Confidence 001110 111222233 3456899999 666555533222 233322110 012222211234
Q ss_pred CeEEEEEc-------cCCCEEEEeeCCCcEEEEeCCCC-cee--EEee-cCCCcEEEEEEEeCCCEEEEEe
Q 004214 424 GIWSVEFS-------PVDQVVITASGDKTIKIWSISDG-SCL--KTFE-GHTSSVLRASFLTRGAQIVSCG 483 (768)
Q Consensus 424 ~v~~v~~s-------~~~~~l~t~~~d~~i~iwd~~~~-~~~--~~~~-~~~~~v~~~~~s~~~~~l~s~~ 483 (768)
....++|. .+|.++++....+.|...++... ... ..+. +....+..+++.|||.+.++..
T Consensus 260 ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 260 APSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp CEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred CCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 56778883 56777777777788888888753 322 2332 2345788999999997666554
No 346
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=94.14 E-value=2.5 Score=46.92 Aligned_cols=197 Identities=9% Similarity=0.094 Sum_probs=98.3
Q ss_pred CCCEEEEEeC----CCcEEEEECCCceeeeee-e-------CCccceEEEeeeeecCCCEEEEEEeCC------CeEEEE
Q 004214 251 EEQYLAVATN----IEQVQVYDLSSMSCSYVL-A-------GHSEIVLCLDTCALSSGKILIVTGSKD------NSVRLW 312 (768)
Q Consensus 251 ~~~~l~~~~~----~~~i~i~d~~~~~~~~~~-~-------~~~~~v~~l~~~~~~~~~~~l~~~~~d------g~i~iw 312 (768)
++.+++.|+. ...+.+||..+..-...- . ..... .++. ....++.+++.|+.+ ..+.+|
T Consensus 397 ~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~-hs~~--~~~~~~~lyv~GG~~~~~~~~~dv~~y 473 (695)
T 2zwa_A 397 GNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMC-HTFT--TISRNNQLLLIGGRKAPHQGLSDNWIF 473 (695)
T ss_dssp SSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBS-CEEE--EETTTTEEEEECCBSSTTCBCCCCEEE
T ss_pred CCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccc-eEEE--EEccCCEEEEEcCCCCCCCccccEEEE
Confidence 4556666664 246888998776543322 1 11111 1111 333134456666643 357889
Q ss_pred eCCCceEEEeeecccCcE-EEEEEecCCCcEEEEEeCCC--eEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEc
Q 004214 313 DSESRCCVGVGTGHMGAV-GAVAFSKKLQNFLVSGSSDH--TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVA 389 (768)
Q Consensus 313 d~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 389 (768)
|..+.+....-....... .+++...+ ..+++.|+.++ .+.+||.....-....+.. . .........++.+.
T Consensus 474 d~~t~~W~~~~~~p~~R~~h~~~~~~~-~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g-~----~p~~r~~~~a~v~~ 547 (695)
T 2zwa_A 474 DMKTREWSMIKSLSHTRFRHSACSLPD-GNVLILGGVTEGPAMLLYNVTEEIFKDVTPKD-E----FFQNSLVSAGLEFD 547 (695)
T ss_dssp ETTTTEEEECCCCSBCCBSCEEEECTT-SCEEEECCBCSSCSEEEEETTTTEEEECCCSS-G----GGGSCCBSCEEEEE
T ss_pred eCCCCcEEECCCCCCCcccceEEEEcC-CEEEEECCCCCCCCEEEEECCCCceEEccCCC-C----CCCcccceeEEEEe
Confidence 998876544322111111 12222234 34777777654 6888887753110000000 0 00011122335555
Q ss_pred cC-CCEEEEEeC--C-----CcEEEEeCCCCce-----EEEEec---cCCCeEEEEEccCCCEEEEeeC--------CCc
Q 004214 390 PN-DSLVCTGSQ--D-----RTACVWRLPDLVS-----VVTFRG---HKRGIWSVEFSPVDQVVITASG--------DKT 445 (768)
Q Consensus 390 ~~-~~~l~~~~~--d-----g~i~i~d~~~~~~-----~~~~~~---~~~~v~~v~~s~~~~~l~t~~~--------d~~ 445 (768)
.+ +++++.|+. + ..+.+||+.+..- -..+.. ....-.+++...++++++.|+. ...
T Consensus 548 ~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 627 (695)
T 2zwa_A 548 PVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNS 627 (695)
T ss_dssp TTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTS
T ss_pred CCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCe
Confidence 55 777888775 2 3588999887661 112211 1111123333444777777774 346
Q ss_pred EEEEeCCCCce
Q 004214 446 IKIWSISDGSC 456 (768)
Q Consensus 446 i~iwd~~~~~~ 456 (768)
|.+||+.+.+-
T Consensus 628 v~~yd~~t~~W 638 (695)
T 2zwa_A 628 IISLDPLSETL 638 (695)
T ss_dssp EEEEETTTTEE
T ss_pred EEEEECCCCeE
Confidence 89999887643
No 347
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=92.40 E-value=8.9 Score=37.61 Aligned_cols=251 Identities=12% Similarity=0.040 Sum_probs=135.8
Q ss_pred ceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCccccee-
Q 004214 150 EIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKME- 228 (768)
Q Consensus 150 ~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~- 228 (768)
+..+++.+.+|.|+--.+.+-......... .........+.+..+......+.+++.+..|.++.......|.....
T Consensus 3 E~v~v~ls~~GyiKr~~~~~y~~~~rgg~g--~~~~~~ke~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~ 80 (327)
T 3uc1_A 3 EDVVVTITETGYAKRTKTDLYRSQKRGGKG--VQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTA 80 (327)
T ss_dssp CEEEEEEETTSEEEEEEHHHHHHHC----------CCCCGGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSS
T ss_pred ccEEEEEeCCCEEEEeeHHHhhhcccCCCC--ccccccCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccC
Confidence 347888899999886654322111000000 00001112244556666678888999999999988776655532111
Q ss_pred --eEEEeee-cccCCceeEEEEecC--CCCEEEEEeCCCcEEEEECCCcee-------eeeeeCCccceEEEeeeeecCC
Q 004214 229 --LILSKRL-VGYNEEILDLKFLGE--EEQYLAVATNIEQVQVYDLSSMSC-------SYVLAGHSEIVLCLDTCALSSG 296 (768)
Q Consensus 229 --~~~~~~~-~~~~~~i~~~~~~~~--~~~~l~~~~~~~~i~i~d~~~~~~-------~~~~~~~~~~v~~l~~~~~~~~ 296 (768)
.+....+ ......|..+....+ ++..+++++..|.++-..+..... ...+... +.+..+. .....
T Consensus 81 ~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~-D~lv~~~--~~~~~ 157 (327)
T 3uc1_A 81 RGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDN-DELVGAV--LCSAG 157 (327)
T ss_dssp CCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTT-CCEEEEE--EECTT
T ss_pred CCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCC-CEEEEEE--EecCC
Confidence 1110011 123456777666543 578999999999999988654322 1123333 3333332 23344
Q ss_pred CEEEEEEeCCCeEEEEeCC--Cce---------EEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCc
Q 004214 297 KILIVTGSKDNSVRLWDSE--SRC---------CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAE 365 (768)
Q Consensus 297 ~~~l~~~~~dg~i~iwd~~--~~~---------~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 365 (768)
.. ++..+..|.+..+... .-. ..-.+. ....|.++...+.+. .++..+..|.++.-.+........
T Consensus 158 d~-ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~-~ll~~T~~G~~Krt~l~e~~~~~R 234 (327)
T 3uc1_A 158 DD-LLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGT-YLLVATSGGYAKRTAIEEYPVQGR 234 (327)
T ss_dssp CE-EEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTC-EEEEEETTSEEEEEEGGGSCBCCT
T ss_pred CE-EEEEECCCeEEEEECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCC-EEEEEeCCCcEEEEEHHHccccCc
Confidence 44 7778889998888776 211 111121 234566665555433 688999999999887764322110
Q ss_pred cccccceeeE--eeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004214 366 QPMNLKAKAV--VAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPD 411 (768)
Q Consensus 366 ~~~~~~~~~~--~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~ 411 (768)
. ...... +......+..+....+...++..+.+|.+..++...
T Consensus 235 ~---~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 235 G---GKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp T---SCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGG
T ss_pred C---CCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehhh
Confidence 0 001111 111123344444444455666677788877776543
No 348
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=92.26 E-value=12 Score=38.80 Aligned_cols=110 Identities=14% Similarity=0.138 Sum_probs=56.9
Q ss_pred ceEEEeeeeecCCCEEEEEEeCC-CeEEEEeCCCceEEE--eeec------ccCcEEEEEEecC---CCcEEEEEeC---
Q 004214 284 IVLCLDTCALSSGKILIVTGSKD-NSVRLWDSESRCCVG--VGTG------HMGAVGAVAFSKK---LQNFLVSGSS--- 348 (768)
Q Consensus 284 ~v~~l~~~~~~~~~~~l~~~~~d-g~i~iwd~~~~~~~~--~~~~------~~~~v~~~~~~~~---~~~~l~s~~~--- 348 (768)
....++ +.+++.. +++ ... +.|++++..++.... .+.. ..+....++++|+ +..+.++-+.
T Consensus 28 ~P~~~a--~~pdG~l-~V~-e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~ 103 (454)
T 1cru_A 28 KPHALL--WGPDNQI-WLT-ERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNP 103 (454)
T ss_dssp SEEEEE--ECTTSCE-EEE-ETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECT
T ss_pred CceEEE--EcCCCcE-EEE-EcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEecccc
Confidence 345665 6676653 444 455 479888865554322 2211 2456779999995 4544444432
Q ss_pred ---------CCeEEEEeCCCCCCCCccccccceee--EeeccCCCeEEEEEccCCCEEEEEeC
Q 004214 349 ---------DHTIKVWSFDGLSDDAEQPMNLKAKA--VVAAHGKDINSLAVAPNDSLVCTGSQ 400 (768)
Q Consensus 349 ---------dg~i~iwd~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~s~~~~~l~~~~~ 400 (768)
...|.-|++........ ...... ...........|+|.|+|.+.++.+.
T Consensus 104 ~~~~~~~~~~~~v~r~~~~~~~~~~~---~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 104 KSTDKELPNQTIIRRYTYNKSTDTLE---KPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp TC--CCSCEEEEEEEEEEETTTTEEE---EEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred CCCccccccccEEEEEEECCCCCCcC---CcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 23455555432211000 001111 11112234789999999988777553
No 349
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=91.48 E-value=19 Score=41.43 Aligned_cols=38 Identities=29% Similarity=0.427 Sum_probs=33.5
Q ss_pred CeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEee
Q 004214 424 GIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFE 461 (768)
Q Consensus 424 ~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~ 461 (768)
.+.+++..++..++++-+.|+++|+|++.+++++.+..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 46778888888999999999999999999999988754
No 350
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=90.80 E-value=12 Score=36.14 Aligned_cols=209 Identities=7% Similarity=0.050 Sum_probs=110.8
Q ss_pred CCCEEEEEe--CCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCC-------------CeEEEEeCC
Q 004214 251 EEQYLAVAT--NIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKD-------------NSVRLWDSE 315 (768)
Q Consensus 251 ~~~~l~~~~--~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~d-------------g~i~iwd~~ 315 (768)
++..+.... .++.|+..+....... .+... .+.. +.+.++.+..+...+ ..|+..++.
T Consensus 24 ~g~~iy~~n~~d~~~ly~~~~dg~~~~-~l~~~--~~~~----i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~d 96 (302)
T 3s25_A 24 SDGEVFFSNTNDNGRLYAMNIDGSNIH-KLSND--TAMY----INADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRN 96 (302)
T ss_dssp ETTEEEEEEGGGTTEEEEEETTSCSCE-EEEEE--EEEE----EEECSSEEEEEEECC------CCSSCCSEEEEEEETT
T ss_pred eCCEEEEEeCCCCceEEEEcCCCCCCE-EccCC--ceee----EEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCC
Confidence 344444443 2466666666544433 33221 1222 456777755555543 467777887
Q ss_pred CceEEEeeecccCcEEEEEEecCCCcEEEEE---eCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCC
Q 004214 316 SRCCVGVGTGHMGAVGAVAFSKKLQNFLVSG---SSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND 392 (768)
Q Consensus 316 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~---~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 392 (768)
.+........ . +..++++++.+..+- ..+..|...++.... ...+..+. + .+++|++
T Consensus 97 g~~~~~l~~~---~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-----------~~~lt~~~--~--~~~~~~g 156 (302)
T 3s25_A 97 GHGSTVLDPD---P--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE-----------KKKIKNHY--L--FTCNTSD 156 (302)
T ss_dssp SCCCEEEECS---C--EEEEEEETTEEEEEEESSSSCEEEEEEETTSCC-----------CEEEESSC--C--CCSEEET
T ss_pred CCcceEeecC---C--ccEEEEeCCEEEEEeecCCCCceEEEEECCCCC-----------eEEEeCCC--c--eEeeEEC
Confidence 6653333221 1 225677766544444 233444444554321 11122221 1 4567888
Q ss_pred CEEEEEeC-CCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCC--CcEEEEeCCCCceeEEeecCCCcEEE
Q 004214 393 SLVCTGSQ-DRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGD--KTIKIWSISDGSCLKTFEGHTSSVLR 469 (768)
Q Consensus 393 ~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d--~~i~iwd~~~~~~~~~~~~~~~~v~~ 469 (768)
+.|.-.+. ...|...++..+.....+.+ ... ..++|++.+|+-.... ..|..-++.... ...+.. ..+
T Consensus 157 ~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~---~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~-~~~Lt~--~~~-- 227 (302)
T 3s25_A 157 RYFYYNNPKNGQLYRYDTASQSEALFYDC---NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPN-PVVLTE--ANI-- 227 (302)
T ss_dssp TEEEEECTTTCCEEEEETTTTEEEEEECS---CEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCC-CEECSC--SCE--
T ss_pred CEEEEEeCCCceEEEEECCCCCEEEEeCC---Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCCCC-eEEEeC--CCc--
Confidence 88886665 56888888876654443332 222 3466888888765543 356666665433 444432 233
Q ss_pred EEEEeCCCEEEEEeC--CCcEEEEECCC
Q 004214 470 ASFLTRGAQIVSCGA--DGLVKLWTVRT 495 (768)
Q Consensus 470 ~~~s~~~~~l~s~~~--dg~i~iwd~~~ 495 (768)
..|+|++.+|+-+.. .+.|..-++.-
T Consensus 228 ~~~~~~g~~Iy~~~~~~~~~i~~~~~DG 255 (302)
T 3s25_A 228 EHYNVYGSLIFYQRGGDNPALCVVKNDG 255 (302)
T ss_dssp EEEEEETTEEEEEECSSSCEEEEEETTS
T ss_pred ceEEECCCEEEEEECCCCcEEEEEECCC
Confidence 348889998876533 34566666643
No 351
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=87.33 E-value=24 Score=34.83 Aligned_cols=81 Identities=14% Similarity=0.087 Sum_probs=51.4
Q ss_pred EEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCee--EEEec----CccceeEEEEEcCC---CCEEEEE-
Q 004214 23 THYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKC--VATLD----KHFSRVTSMAITSD---GSTLISA- 92 (768)
Q Consensus 23 ~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~--~~~l~----~h~~~V~~l~fs~d---~~~L~s~- 92 (768)
+..+-..-.....|+|.|||+. +++--..|.|++++..+++. +..+. ...+....|+|+|+ +.+|...
T Consensus 24 ~~~va~gL~~P~~ia~~pdG~l--lVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~y 101 (347)
T 3das_A 24 LRTVATGLNSPWGLAPLPGGDL--LVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYF 101 (347)
T ss_dssp EEEEECCCSSEEEEEECTTSCE--EEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEE
T ss_pred eEEeecCCCCceEEEEcCCCcE--EEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEE
Confidence 4455555667889999999874 55554489999998765543 32221 23456899999995 3444432
Q ss_pred e--CCCeEEEEECCC
Q 004214 93 G--RDKVVNLWDLRD 105 (768)
Q Consensus 93 ~--~dg~i~vWd~~~ 105 (768)
+ .++.|.-|.+..
T Consensus 102 t~~~~~~v~R~~~~~ 116 (347)
T 3das_A 102 TSASDNRIVRMLYDE 116 (347)
T ss_dssp ECSSSEEEEEEEBCT
T ss_pred ecCCCCEEEEEEeCC
Confidence 2 344555565544
No 352
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=86.62 E-value=29 Score=35.01 Aligned_cols=291 Identities=11% Similarity=0.085 Sum_probs=130.3
Q ss_pred eEEEEeeCCcEEEEEEcCCc-eeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCccc----
Q 004214 151 IHFITVGERGIVRMWNADSA-CLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEK---- 225 (768)
Q Consensus 151 ~~~~~~~~~g~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~---- 225 (768)
..++....+|.|..|-.... ++=............. ..........+.......++.+.+|.++.|-.......
T Consensus 11 ~~~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v-~~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~g~ 89 (389)
T 3kci_A 11 RENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPC-EALATLRPVQLIGGEQTLFAVTADGKLYATGYGAGGRLGIGG 89 (389)
T ss_dssp ----------CEEEEEECTTSTTSSCSCSEEEEEEEC-HHHHHTCEEEEEEETTEEEEEETTSCEEEEECCGGGTTSSSS
T ss_pred ccceeECCCCeEEEeeCCCCccCCCCcCccccCCEec-ccccCCceEEEEeCCCeEEEEcCCCcEEEEECCCCCCCCCCC
Confidence 46788888999999966543 2110000000000000 00011122334455666788899999999965432210
Q ss_pred ceeeEEEeeecccCC-ceeEEEEecCCCCEEEEEeCCCcEEEEECCCce-----------eeeeeeC-CccceEEEeeee
Q 004214 226 KMELILSKRLVGYNE-EILDLKFLGEEEQYLAVATNIEQVQVYDLSSMS-----------CSYVLAG-HSEIVLCLDTCA 292 (768)
Q Consensus 226 ~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~-----------~~~~~~~-~~~~v~~l~~~~ 292 (768)
.........+..... .+..+... ....+.++-+.+|.|+.|-....- ....+.. ....|..++
T Consensus 90 ~~~~~~p~~v~~~~~~~~~~v~i~-~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va--- 165 (389)
T 3kci_A 90 TESVSTPTLLESIQHVFIKKVAVN-SGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVA--- 165 (389)
T ss_dssp SCCEEEEEECGGGTTSCEEEEEEC-TTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEE---
T ss_pred cCCccCCEEcccccCCceeEEEEC-cCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEE---
Confidence 011111222222222 22223332 355677777888999999654311 1111111 112455543
Q ss_pred ecCCCEEEEEEeCCCeEEEEeCCCc------------eEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCC
Q 004214 293 LSSGKILIVTGSKDNSVRLWDSESR------------CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGL 360 (768)
Q Consensus 293 ~~~~~~~l~~~~~dg~i~iwd~~~~------------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 360 (768)
..... .++-..+|.|+.|-.... .+..........|..++.... ..+.+.-..||.|..|-....
T Consensus 166 -~G~~h-s~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g-~~~t~~l~~~G~v~~wG~n~~ 242 (389)
T 3kci_A 166 -AGGAH-SACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSG-DAQTLCLTDDDTVWSWGDGDY 242 (389)
T ss_dssp -ECSSE-EEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCS-SCEEEEEETTTEEEEEECCGG
T ss_pred -eCcCe-EEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCC-CcEEEEEccCCEEEEEeCCCC
Confidence 12222 556678999999964321 111111112335666665432 235667788999999975432
Q ss_pred CCCCcccc--ccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCc-----------eEEEEec-cCCCeE
Q 004214 361 SDDAEQPM--NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLV-----------SVVTFRG-HKRGIW 426 (768)
Q Consensus 361 ~~~~~~~~--~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~-----------~~~~~~~-~~~~v~ 426 (768)
........ ...+..........|..++.. ....++-+.+|.|+.|=....- ....+.. ....|.
T Consensus 243 GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G--~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~ 320 (389)
T 3kci_A 243 GKLGRGGSDGCKVPMKIDSLTGLGVVKVECG--SQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVI 320 (389)
T ss_dssp GTTSSSSCCCEEEEEECGGGTTSCEEEEEEE--TTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEE
T ss_pred CCCCCCCCCCccccEEecccCCCcEEEEeCC--CCEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEE
Confidence 11100000 011111111122245555544 3344555788999999653210 1111111 123455
Q ss_pred EEEEccCCCEEEEeeCCCcEEEEeCCC
Q 004214 427 SVEFSPVDQVVITASGDKTIKIWSISD 453 (768)
Q Consensus 427 ~v~~s~~~~~l~t~~~d~~i~iwd~~~ 453 (768)
.++.. ....++-..||.|+.|-...
T Consensus 321 ~ia~G--~~h~~al~~~G~v~~wG~n~ 345 (389)
T 3kci_A 321 AIATG--SLHCVCCTEDGEVYTWGDND 345 (389)
T ss_dssp EEEEC--SSEEEEEETTCCEEEEECCT
T ss_pred EEEec--cCeEEEECCCCCEEEeeCCC
Confidence 55544 33444456788888887653
No 353
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=85.66 E-value=32 Score=34.66 Aligned_cols=248 Identities=10% Similarity=0.079 Sum_probs=121.8
Q ss_pred EEEEeeCCcEEEEEEcCCceeeeecC-Cceee-cccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCccc----
Q 004214 152 HFITVGERGIVRMWNADSACLYEQKS-SDVTI-SFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEK---- 225 (768)
Q Consensus 152 ~~~~~~~~g~i~iwd~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~---- 225 (768)
+.+....+|.|..|-....-.+.... ..... ..........+....+.......++.+.+|.++.|-.......
T Consensus 64 ~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~ 143 (389)
T 3kci_A 64 TLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGN 143 (389)
T ss_dssp EEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSS
T ss_pred eEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCC
Confidence 56677788999999654431110000 00000 0001111123344566677788899999999999965442210
Q ss_pred ceeeEEEeeeccc-CCceeEEEEecCCCCEEEEEeCCCcEEEEECCCcee-----------eeeeeC-CccceEEEeeee
Q 004214 226 KMELILSKRLVGY-NEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSC-----------SYVLAG-HSEIVLCLDTCA 292 (768)
Q Consensus 226 ~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~-----------~~~~~~-~~~~v~~l~~~~ 292 (768)
.........+... ...|..++. ...+.++-+.+|.|+.|-....-. ...+.. ....+..++ .
T Consensus 144 ~~~~~~p~~v~~l~~~~i~~va~---G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia--~ 218 (389)
T 3kci_A 144 RSPCDRPRVIESLRGIEVVDVAA---GGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIA--C 218 (389)
T ss_dssp CCCEEEEEECGGGTTSCEEEEEE---CSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEE--E
T ss_pred CccCcCCeEecccCCCeEEEEEe---CcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEE--E
Confidence 0111112222222 225666654 455677777889999997543111 111111 122344443 1
Q ss_pred ecCCCEEEEEEeCCCeEEEEeCCCc-----------eEEEeeec-ccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCC
Q 004214 293 LSSGKILIVTGSKDNSVRLWDSESR-----------CCVGVGTG-HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGL 360 (768)
Q Consensus 293 ~~~~~~~l~~~~~dg~i~iwd~~~~-----------~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 360 (768)
-..... .+.-..+|.|+.|-.... .....+.. ....|..++.... +.++-..+|.|..|-....
T Consensus 219 G~g~~~-t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~---hs~alt~~G~v~~wG~n~~ 294 (389)
T 3kci_A 219 GSGDAQ-TLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQ---FSVALTKSGAVYTWGKGDY 294 (389)
T ss_dssp CCSSCE-EEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETT---EEEEEETTSCEEEEECCGG
T ss_pred cCCCcE-EEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCCC---EEEEEeCCCeEEEEeCCCC
Confidence 111223 555678999999954321 11111111 2224666666543 5566688999999976432
Q ss_pred CCCCcc--ccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 004214 361 SDDAEQ--PMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLP 410 (768)
Q Consensus 361 ~~~~~~--~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~ 410 (768)
...... .....+..........|..++.. ....++...||.|+.|=..
T Consensus 295 GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G--~~h~~al~~~G~v~~wG~n 344 (389)
T 3kci_A 295 HRLGHGSDDHVRRPRQVQGLQGKKVIAIATG--SLHCVCCTEDGEVYTWGDN 344 (389)
T ss_dssp GTTCSSSCCCEEEEEECGGGTTCCEEEEEEC--SSEEEEEETTCCEEEEECC
T ss_pred CCCCCCCCccccCCeEeccCCCCCEEEEEec--cCeEEEECCCCCEEEeeCC
Confidence 111000 00111111111122345555543 3344555788889888654
No 354
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=84.23 E-value=31 Score=33.29 Aligned_cols=185 Identities=8% Similarity=0.027 Sum_probs=95.0
Q ss_pred CcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEE---eCCCeEEEEeCCCceEEEeeecccCcEEEEEEecC
Q 004214 262 EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTG---SKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKK 338 (768)
Q Consensus 262 ~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~---~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~ 338 (768)
..|+..++...+....... .. .. +.+.++.+..+- .....|...++....... +..+.. ..++++
T Consensus 88 ~~Iy~i~~dg~~~~~l~~~-~~--~~----~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~-lt~~~~----~~~~~~ 155 (302)
T 3s25_A 88 NSLCRIKRNGHGSTVLDPD-PC--IY----ASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKK-IKNHYL----FTCNTS 155 (302)
T ss_dssp EEEEEEETTSCCCEEEECS-CE--EE----EEEETTEEEEEEESSSSCEEEEEEETTSCCCEE-EESSCC----CCSEEE
T ss_pred CeEEEEeCCCCcceEeecC-Cc--cE----EEEeCCEEEEEeecCCCCceEEEEECCCCCeEE-EeCCCc----eEeeEE
Confidence 4677788877664433222 11 12 345666644444 234566666776443332 332322 456778
Q ss_pred CCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCC--cEEEEeCCCCceEE
Q 004214 339 LQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDR--TACVWRLPDLVSVV 416 (768)
Q Consensus 339 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg--~i~i~d~~~~~~~~ 416 (768)
++.+..+......|..-++.... .. .+. .... ...++|++.+|+-...++ .|..-++..... .
T Consensus 156 g~~iy~t~~g~~~Iy~~~l~g~~----------~~-~l~--~~~~-~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~-~ 220 (302)
T 3s25_A 156 DRYFYYNNPKNGQLYRYDTASQS----------EA-LFY--DCNC-YKPVVLDDTNVYYMDVNRDNAIVHVNINNPNP-V 220 (302)
T ss_dssp TTEEEEECTTTCCEEEEETTTTE----------EE-EEE--CSCE-EEEEEEETTEEEEEEGGGTTEEEEECSSSCCC-E
T ss_pred CCEEEEEeCCCceEEEEECCCCC----------EE-EEe--CCCc-cceeeecCCEEEEEEcCCCcEEEEEECCCCCe-E
Confidence 77655565546777777776431 11 111 1222 234668888888766543 566666654432 2
Q ss_pred EEeccCCCeEEEEEccCCCEEEEee--CCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEE
Q 004214 417 TFRGHKRGIWSVEFSPVDQVVITAS--GDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSC 482 (768)
Q Consensus 417 ~~~~~~~~v~~v~~s~~~~~l~t~~--~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 482 (768)
.+. ...+ ..|+|++..|+-+. ..+.|..-++. |...+.+... .+. .+++.+.+|+-.
T Consensus 221 ~Lt--~~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~D-G~~r~~l~~~--~~~--~i~i~~d~Iy~t 279 (302)
T 3s25_A 221 VLT--EANI--EHYNVYGSLIFYQRGGDNPALCVVKND-GTGFKELAKG--EFC--NINVTSQYVYFT 279 (302)
T ss_dssp ECS--CSCE--EEEEEETTEEEEEECSSSCEEEEEETT-SCCCEEEEES--CEE--EEEECSSEEEEE
T ss_pred EEe--CCCc--ceEEECCCEEEEEECCCCcEEEEEECC-CCccEEeeCC--ccc--eEEEeCCEEEEE
Confidence 332 1223 34788888887653 23566666664 4333333321 222 344555555443
No 355
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=83.47 E-value=35 Score=33.32 Aligned_cols=232 Identities=9% Similarity=0.031 Sum_probs=124.3
Q ss_pred EEEEEeCCCeEEEEeCCCc-------eEEEeee-cccCcEEEEEEecCCCcEEEEEeCCCeEEEEe---CCCCCCCCccc
Q 004214 299 LIVTGSKDNSVRLWDSESR-------CCVGVGT-GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS---FDGLSDDAEQP 367 (768)
Q Consensus 299 ~l~~~~~dg~i~iwd~~~~-------~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd---~~~~~~~~~~~ 367 (768)
++++.+.+|.|+--.+.+. .-..... .....+..+....... .++..+..|.+.-.. ++........
T Consensus 5 v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~ke~D~~~~~~~~~t~d-~ll~fT~~Gr~y~~~~~~lp~~~r~~~G- 82 (327)
T 3uc1_A 5 VVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHD-LILFFTTQGRVYRAKAYDLPEASRTARG- 82 (327)
T ss_dssp EEEEEETTSEEEEEEHHHHHHHC--------CCCCGGGCEEEEEEEETTS-EEEEEETTSEEEEEEGGGSCBCCSSSCC-
T ss_pred EEEEEeCCCEEEEeeHHHhhhcccCCCCccccccCCCCEEEEEEEeCCCC-EEEEEeCCCeEEEEEHHHCcCCCccCCC-
Confidence 4777888888886653211 0011111 1233444444433323 566677777765544 3322111000
Q ss_pred cccceeeEeeccCCCeEEEEEcc---CCCEEEEEeCCCcEEEEeCCCCc-------eEEEEeccCCCeEEEEEccCCCEE
Q 004214 368 MNLKAKAVVAAHGKDINSLAVAP---NDSLVCTGSQDRTACVWRLPDLV-------SVVTFRGHKRGIWSVEFSPVDQVV 437 (768)
Q Consensus 368 ~~~~~~~~~~~~~~~i~~~~~s~---~~~~l~~~~~dg~i~i~d~~~~~-------~~~~~~~~~~~v~~v~~s~~~~~l 437 (768)
........ ......|.++..-+ +..+++..+.+|.++...+.... ....+.. ...+..+........|
T Consensus 83 ~~i~~~l~-l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~i 160 (327)
T 3uc1_A 83 QHVANLLA-FQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDL 160 (327)
T ss_dssp EEHHHHTT-CCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEE
T ss_pred EEHHHccC-CCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEE
Confidence 00000000 11234555554433 57899999999999998865422 1122333 3445555444455667
Q ss_pred EEeeCCCcEEEEeCC--CC---------ceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCe-------EE
Q 004214 438 ITASGDKTIKIWSIS--DG---------SCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE-------CI 499 (768)
Q Consensus 438 ~t~~~d~~i~iwd~~--~~---------~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~-------~~ 499 (768)
+..+..|.+..+... .- ...-.+. ....|.++...+.+.+|+..+..|.++.-.+.... -+
T Consensus 161 ll~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~ 239 (327)
T 3uc1_A 161 LLVSANGQSIRFSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGV 239 (327)
T ss_dssp EEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCE
T ss_pred EEEECCCeEEEEECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcE
Confidence 777788998888776 21 1111222 34567777766677799999999999888764322 22
Q ss_pred EEec--cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 004214 500 ATYD--KHEDKIWALAVGKKTEMFATGGSDALVNLWHD 535 (768)
Q Consensus 500 ~~~~--~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~ 535 (768)
..+. .-.+.+..+....+...++..+.+|.+.-+..
T Consensus 240 ~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~ 277 (327)
T 3uc1_A 240 LTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAA 277 (327)
T ss_dssp ESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEG
T ss_pred EEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEeh
Confidence 2222 21344555544445556777777887766654
No 356
>3dwl_G Actin-related protein 2/3 complex subunit 5; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=82.74 E-value=3.4 Score=34.50 Aligned_cols=90 Identities=11% Similarity=0.098 Sum_probs=62.8
Q ss_pred hhHHHHhhcccchHHHHHHHhhcCCch--------hHHHHHHHHHhchhhHHHHHHHHhhcCHHHHHHHHHHHHHHhcCC
Q 004214 555 GQELENAVLDADYTKAIQVAFELRRPH--------KLFELFASVCRKREAELQIEKALHALGKEEIRQLLEYVREWNTKP 626 (768)
Q Consensus 555 ~~~~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~ 626 (768)
.++++.++..++..+|+..+++..... ..+..+..++... +..+++.++.+|+.++...|++||-+-+..+
T Consensus 40 ~~qvr~lL~~g~~~~ALk~aL~~pP~~~~~~~~K~~~~~~Vl~vL~si-K~sdI~~~v~~L~~~~~D~LMKYiYkGm~~~ 118 (152)
T 3dwl_G 40 IPQARSAIQTGNALQGLKTLLSYVPYGNDVQEVRTQYLNAFVDVLSNI-RAADIPAFVKECSTEEIDNIVNFIYRGLANP 118 (152)
T ss_dssp HHHHHHHHHHSCCHHHHHHHTSSCCCSCSCHHHHHHHHHHHHHHHHTS-CGGGHHHHHHHSCHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHc-cHHHHHHHHHHhCHHHHHHHHHHHHHhccCc
Confidence 467888999999999999998753211 1122222222221 2237999999999999999999998888776
Q ss_pred --CchHHHHHHHHHHhccCCc
Q 004214 627 --KLCHVAQFVLFQLFNIHPP 645 (768)
Q Consensus 627 --~~~~~~~~~l~~~l~~~~~ 645 (768)
..+.+++.|-..++..-|.
T Consensus 119 ~~~~~~~LL~WHEKl~e~~G~ 139 (152)
T 3dwl_G 119 QAYNSSVLLNWHEKVVEISGI 139 (152)
T ss_dssp ---CCSHHHHHHHHHHHTTCS
T ss_pred cccccHHHHHHHHHHHHHcCC
Confidence 5777888888777766554
No 357
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=82.32 E-value=44 Score=33.62 Aligned_cols=131 Identities=9% Similarity=0.030 Sum_probs=63.2
Q ss_pred CeEEEEEccC-CCEEEEEeCCCcEEEEeCCCCceEEEEec--cC---CCeEEEEEccC-CCEEEEeeC-----------C
Q 004214 382 DINSLAVAPN-DSLVCTGSQDRTACVWRLPDLVSVVTFRG--HK---RGIWSVEFSPV-DQVVITASG-----------D 443 (768)
Q Consensus 382 ~i~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~---~~v~~v~~s~~-~~~l~t~~~-----------d 443 (768)
.+.+++++|. ...+.+++..+ |...+ ..++.-..+.. .. ..+.+++++|. ...|.++.. +
T Consensus 233 ~~~~i~~~~~~~~~l~vg~~~g-l~~s~-D~G~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~ 310 (394)
T 3b7f_A 233 DPHCVVQHPAAPDILYQQNHCG-IYRMD-RREGVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPG 310 (394)
T ss_dssp CEEEEEECSSSTTEEEEEETTE-EEEEE-TTTTEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCC
T ss_pred ceeEEEECCCCCCEEEEEcCCe-EEEeC-CCCCcceECCCCCCCCCccceEEEEECCCCCCEEEEEeccCCccceeecCC
Confidence 5889999985 45666666544 44433 22222222211 11 23567888763 333444321 2
Q ss_pred CcEEEEeCCC-CceeEEee-cCC--C---c--EEEEEEEeC-CCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEE
Q 004214 444 KTIKIWSISD-GSCLKTFE-GHT--S---S--VLRASFLTR-GAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALA 513 (768)
Q Consensus 444 ~~i~iwd~~~-~~~~~~~~-~~~--~---~--v~~~~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~ 513 (768)
+...+|...+ |+.-..+. +-. . . ...++++|. ...|+.++.++.|..- .+.|+.-..+..+-..+.++.
T Consensus 311 ~~~~~~~S~DgG~tW~~~~~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l~~S-~D~G~tW~~~~~~lp~~~~v~ 389 (394)
T 3b7f_A 311 GKPAVYVTRDAGESWQRQDRGLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEIWAS-ADEGEHWQCIASHLPHIYAVQ 389 (394)
T ss_dssp SSCCEEEESSTTSCCEEECBTSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSCEEEE-SSTTSBCEEEECSCSCEEEEE
T ss_pred CceeEEEECCCCCCceECCCCCCCccccceEEEEEEEECCCCCCEEEEEeCCCeEEEE-CCCCCCceEcccCCCCeeEEE
Confidence 3345555443 33333322 111 0 0 134777764 3456666666655432 234444444444444577776
Q ss_pred Ec
Q 004214 514 VG 515 (768)
Q Consensus 514 ~s 515 (768)
|.
T Consensus 390 ~~ 391 (394)
T 3b7f_A 390 SA 391 (394)
T ss_dssp EE
T ss_pred Ee
Confidence 53
No 358
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=81.42 E-value=37 Score=32.19 Aligned_cols=205 Identities=13% Similarity=0.073 Sum_probs=116.9
Q ss_pred ccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecC-CCCEEEEEeCCCcEEEEE
Q 004214 190 KRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGE-EEQYLAVATNIEQVQVYD 268 (768)
Q Consensus 190 ~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~~~~~i~i~d 268 (768)
.+.+.........+.++..+..|.++.......|.....- +......|..+.. .+ ++..++..+..|.++-..
T Consensus 23 gD~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~-----ll~~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~ 96 (276)
T 3no0_A 23 KAPVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVS-----LKSREEKIVGAFI-REKFGNRLLLATKKGYVKKIP 96 (276)
T ss_dssp CCCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECC-----CSSTTCCEEEEEE-GGGSCSEEEEEETTSEEEEEE
T ss_pred CCeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccc-----cCCCCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEE
Confidence 4566666667778899999999999876655443221111 1334566777654 33 567999999999999988
Q ss_pred CCCce------eeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCC---------ceEEEeeecccCcEEEE
Q 004214 269 LSSMS------CSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES---------RCCVGVGTGHMGAVGAV 333 (768)
Q Consensus 269 ~~~~~------~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~---------~~~~~~~~~~~~~v~~~ 333 (768)
+.... ....+... +.+..+. ....... ++..+..|.+..++... |...-.+.. ...|.++
T Consensus 97 l~~~~~~~~G~~~i~lkeg-D~l~~~~--~~~~~~~-ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~-~d~vv~~ 171 (276)
T 3no0_A 97 LAEFEYKAQGMPIIKLTEG-DEVVSIA--SSVDETH-ILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEK-NDETSGL 171 (276)
T ss_dssp GGGTTTCSTTEECSCCCTT-CCEEEEE--ECCSSCE-EEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCT-TCCEEEE
T ss_pred HHHhhhhcCCeEEEecCCC-CEEEEEE--EeCCCCE-EEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCC-CCEEEEE
Confidence 75532 11123322 3343332 2233344 77788899988886432 222112222 3455555
Q ss_pred EEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEE--EeCC
Q 004214 334 AFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACV--WRLP 410 (768)
Q Consensus 334 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i--~d~~ 410 (768)
...+++. .++..+..|.++...+......... .+..... ...+.+..+....+...++..+.+|.+.. ++..
T Consensus 172 ~~~~~~~-~ll~~T~~G~~kr~~~~e~~~~~R~---gkGv~~i-~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~ 245 (276)
T 3no0_A 172 RIWNGEP-YLLVITAKGRVKKISHEEIPKTNRG---VKGTEVS-GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQK 245 (276)
T ss_dssp EEESSCS-EEEEEETTSCEEEEEGGGSCCCCTT---CCCEECC-CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGG
T ss_pred EEeCCCC-EEEEEeCCCcEEEeEHHHcccCCCC---CcceEEE-cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHH
Confidence 5555433 6888899999999887644221110 0111111 22334444433334445666677777776 7654
No 359
>1k8k_G P16, ARP2/3 complex 16 kDa subunit, P16-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: a.118.13.1 PDB: 1tyq_G* 1u2v_G* 2p9i_G* 2p9k_G* 2p9l_G 2p9n_G* 2p9p_G* 2p9s_G* 2p9u_G* 3rse_G 3dxm_G* 3dxk_G
Probab=81.35 E-value=8.1 Score=32.27 Aligned_cols=87 Identities=18% Similarity=0.168 Sum_probs=58.2
Q ss_pred hhHHHHhhcccchHHHHHHHhhcCCch--------hHHHHHHHHHhchhhHHHHHHHHhhcCHHHHHHHHHHHHHHhcCC
Q 004214 555 GQELENAVLDADYTKAIQVAFELRRPH--------KLFELFASVCRKREAELQIEKALHALGKEEIRQLLEYVREWNTKP 626 (768)
Q Consensus 555 ~~~~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~ 626 (768)
.++++.++...+..+|+..++...... ..+.++..++... ...+|+.++..|+.++...|++||-+-+..+
T Consensus 39 ~~qv~~lL~~g~~~~ALk~~L~~pP~~~k~q~~K~~~~~~Vl~VL~si-K~sdI~~~v~~L~~e~~D~LMKYiYkGm~~~ 117 (151)
T 1k8k_G 39 EGEVDSCLRQGNMTAALQAALKNPPINTKSQAVKDRAGSIVLKVLISF-KANDIEKAVQSLDKNGVDLLMKYIYKGFESP 117 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHTSSCCSSCSCHHHHHHHHHHHHHHHHHS-CGGGHHHHHHTSCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHc-cHHHHHHHHHHhChhhhhHHHHHHHHhhcCc
Confidence 557778888899999999998643211 1122222222211 1236999999999999999999998888776
Q ss_pred Cc--hHHHHHHHHHHhcc
Q 004214 627 KL--CHVAQFVLFQLFNI 642 (768)
Q Consensus 627 ~~--~~~~~~~l~~~l~~ 642 (768)
.. +.+++.|-..++..
T Consensus 118 ~~~~~~~LL~WHEKl~~~ 135 (151)
T 1k8k_G 118 SDNSSAVLLQWHEKALAA 135 (151)
T ss_dssp CTTHHHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHh
Confidence 43 45566665555443
No 360
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=81.28 E-value=54 Score=33.92 Aligned_cols=245 Identities=10% Similarity=0.055 Sum_probs=119.6
Q ss_pred eEEEeeeeecCCC-EEEEEEeCCCeEEEEeCCCce---EEEeee---------cccCcEEEEEEecC---CCcEEEEEeC
Q 004214 285 VLCLDTCALSSGK-ILIVTGSKDNSVRLWDSESRC---CVGVGT---------GHMGAVGAVAFSKK---LQNFLVSGSS 348 (768)
Q Consensus 285 v~~l~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~---~~~~~~---------~~~~~v~~~~~~~~---~~~~l~s~~~ 348 (768)
...|+ +.+++. . ++++...|.|++++..... .+..+. ........|+++|+ ...+.++-+.
T Consensus 16 P~~~a--~~pdG~~r-l~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~ 92 (463)
T 2wg3_C 16 PVGAL--HSGDGSQR-LFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTT 92 (463)
T ss_dssp EEEEE--CCSSSSCC-EEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEE
T ss_pred ceEEE--ECCCCCeE-EEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeC
Confidence 34555 667775 4 5556788999999754321 111111 11356788999986 2223444332
Q ss_pred C------------CeEEEEeCCCCCCCCccccccceeeEe--eccCCCeEEEEEccCCCEEEEEeCCC------------
Q 004214 349 D------------HTIKVWSFDGLSDDAEQPMNLKAKAVV--AAHGKDINSLAVAPNDSLVCTGSQDR------------ 402 (768)
Q Consensus 349 d------------g~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~s~~~~~l~~~~~dg------------ 402 (768)
+ ..|.-|.+.............+..... .........|+|.|||.+.++.+..+
T Consensus 93 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~~~~~~~~~~q~~ 172 (463)
T 2wg3_C 93 NQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGMITLDDMEEMDGL 172 (463)
T ss_dssp CCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTTCCHHHHHHCTTC
T ss_pred CCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCCCCCCccccccCc
Confidence 1 134446655321111100011111111 12223468899999998877766543
Q ss_pred -----cEEEEeCCCC--------------------ceEEEEeccCCCeEEEEEccC-----CC-EEEEeeCCC----cEE
Q 004214 403 -----TACVWRLPDL--------------------VSVVTFRGHKRGIWSVEFSPV-----DQ-VVITASGDK----TIK 447 (768)
Q Consensus 403 -----~i~i~d~~~~--------------------~~~~~~~~~~~~v~~v~~s~~-----~~-~l~t~~~d~----~i~ 447 (768)
.|.-.+.+.. ....--.+|.. ...++|.|. |+ .+..+...| .-.
T Consensus 173 ~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RN-p~gla~dp~tg~~~G~l~~~~~D~~G~~~~~~e 251 (463)
T 2wg3_C 173 SDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHD-PGRCAVDRHPTDININLTILCSDSNGKNRSSAR 251 (463)
T ss_dssp CSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSS-CCBEEEESSCSSTTCSEEEEEECC------CEE
T ss_pred CCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCC-cceEEECCCCCCcccceEEEecccCCCCCCCCe
Confidence 2333333321 00111223333 457899996 34 344333212 123
Q ss_pred EEeCCCC------ceeEEeecCC-CcEEEEEEEeC-------CCEEEEEeCCCcEEEEECCCCe---EEEEe--------
Q 004214 448 IWSISDG------SCLKTFEGHT-SSVLRASFLTR-------GAQIVSCGADGLVKLWTVRTGE---CIATY-------- 502 (768)
Q Consensus 448 iwd~~~~------~~~~~~~~~~-~~v~~~~~s~~-------~~~l~s~~~dg~i~iwd~~~~~---~~~~~-------- 502 (768)
|..+..+ .++..+..|. ..++.+.|-.. |.+|+ +...+.|....+.... ....+
T Consensus 252 i~~i~~G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~f~-~~~~g~i~~~~~~~~~~~~~~~~~~~g~~~~~ 330 (463)
T 2wg3_C 252 ILQIIKGKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGSYVF-GDRNGNFLTLQQSPVTKQWQEKPLCLGTSGSC 330 (463)
T ss_dssp EEEEC----CCSCCCCEECCC----CEEEEEECCCSSCTTTTTCEEE-EETTSCEEEEEC-----CCEEEEECEEETTSS
T ss_pred EeeeccCCCCCCCCCeEEeeCCCCccccceEEEeCCCChhhcceEEE-ecCCCcEEEEEeCCCCceeeEEEeecCCcccc
Confidence 4443333 2455554332 56778887532 33444 4445766655554321 11111
Q ss_pred -ccCCCcEEEEEEcCCCCEEEEEe-------CCCcEEEEEcC
Q 004214 503 -DKHEDKIWALAVGKKTEMFATGG-------SDALVNLWHDS 536 (768)
Q Consensus 503 -~~~~~~v~~l~~s~~~~~l~s~~-------~dg~v~vw~~~ 536 (768)
......+..+.+.|||.++++.. .+| +||++.
T Consensus 331 ~~~~~~r~~~v~~~pdG~Lyv~~~~~~~~~~~~G--~I~Ri~ 370 (463)
T 2wg3_C 331 RGYFSGHILGFGEDELGEVYILSSSKSMTQTHNG--KLYKIV 370 (463)
T ss_dssp CSCCCSEEEEEEECTTCCEEEEEESSCGGGCSSE--EEEEEE
T ss_pred cccccCcceEEEECCCCCEEEEeccCCcccCCCC--cEEEec
Confidence 11236789999999999888775 234 677765
No 361
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=80.75 E-value=73 Score=35.11 Aligned_cols=233 Identities=13% Similarity=0.109 Sum_probs=118.6
Q ss_pred eeecCCCEEEEEEeCCC----eEEEEeCCCceEEEeeecccC--------cEEEEEEecCCCcEEEEE----------eC
Q 004214 291 CALSSGKILIVTGSKDN----SVRLWDSESRCCVGVGTGHMG--------AVGAVAFSKKLQNFLVSG----------SS 348 (768)
Q Consensus 291 ~~~~~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~--------~v~~~~~~~~~~~~l~s~----------~~ 348 (768)
|+.+++...+++-+..| .++++|+.+++.+...-.... ....++|..+ ..++++. +.
T Consensus 136 ~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~-~~~~~~~~~~~~~~~~~~~ 214 (711)
T 4hvt_A 136 NCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINK-DTIIFNLVLHKNEITSSLY 214 (711)
T ss_dssp ECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEET-TEEEECCCCSTTCBCTTSS
T ss_pred ecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECC-CEEEEEeCCCCCCcCcCCC
Confidence 46677777666655554 799999999987642111100 0133477644 3344432 12
Q ss_pred CCeEEEEeCCCCCCCCccccccceeeEeeccCCCe-EEEEEccCCCE-----EEEEeCC---CcEEEEeCCC--CceEEE
Q 004214 349 DHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDI-NSLAVAPNDSL-----VCTGSQD---RTACVWRLPD--LVSVVT 417 (768)
Q Consensus 349 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~s~~~~~-----l~~~~~d---g~i~i~d~~~--~~~~~~ 417 (768)
...|+.|.+-+.. .....++......+ .+...++++++ +++.+.+ ..+.+.+... ++ ...
T Consensus 215 ~~~v~~~~~Gt~~--------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~ 285 (711)
T 4hvt_A 215 PNSLYIWKRGESI--------EKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLK-LQK 285 (711)
T ss_dssp BCEEEEEETTSCG--------GGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCE-EEE
T ss_pred CCEEEEEECCCCh--------HHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCc-ceE
Confidence 3457777765431 11222233222222 33455666652 4443322 3456666543 32 222
Q ss_pred EeccCCCeEEEEEccCCCEEEEe----------eCCCcEEEEeCCCCc-------eeEE-ee-cCCCcEEEEEEEeCCCE
Q 004214 418 FRGHKRGIWSVEFSPVDQVVITA----------SGDKTIKIWSISDGS-------CLKT-FE-GHTSSVLRASFLTRGAQ 478 (768)
Q Consensus 418 ~~~~~~~v~~v~~s~~~~~l~t~----------~~d~~i~iwd~~~~~-------~~~~-~~-~~~~~v~~~~~s~~~~~ 478 (768)
+..... ..+..++++.+++.. ...+.|...|+.++. .... +. .....+..+.+..+ ..
T Consensus 286 l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l 362 (711)
T 4hvt_A 286 INMPSD--ATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RV 362 (711)
T ss_dssp CCSCTT--CEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CE
T ss_pred eecCCc--ceEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EE
Confidence 222221 122344556555532 135778999987642 2233 32 23345667777765 56
Q ss_pred EEEEeCCC--cEEEEECCCCe-EEEE-eccC-CCcEEEEEEcCCCC-EEEEEeC---CCcEEEEEcC
Q 004214 479 IVSCGADG--LVKLWTVRTGE-CIAT-YDKH-EDKIWALAVGKKTE-MFATGGS---DALVNLWHDS 536 (768)
Q Consensus 479 l~s~~~dg--~i~iwd~~~~~-~~~~-~~~~-~~~v~~l~~s~~~~-~l~s~~~---dg~v~vw~~~ 536 (768)
+++...+| .|.++++.+++ .... +... .+.+....+++++. ++++.+. -+.+..++..
T Consensus 363 ~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 363 FLATYDNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp EEEEEETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEEEEECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 67777777 47778877775 2233 3222 24566666777665 4444432 2445666543
No 362
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=79.19 E-value=48 Score=32.10 Aligned_cols=228 Identities=11% Similarity=0.098 Sum_probs=122.1
Q ss_pred EEEEEeCCCeEEEEeCCCceE-------EE--eeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccc--
Q 004214 299 LIVTGSKDNSVRLWDSESRCC-------VG--VGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQP-- 367 (768)
Q Consensus 299 ~l~~~~~dg~i~iwd~~~~~~-------~~--~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-- 367 (768)
++++.+.+|.|+-..+..-.. +. .+... ..+..+....... .++..+..|.++-+............
T Consensus 10 ~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~-D~l~~~~~~~~~~-~ll~~T~~G~~~~~~~~~ip~~~r~~~G 87 (312)
T 1suu_A 10 IVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDG-DEIVIALCVNTHD-YLFMISNEGKLYLINAYEIKDSSRASKG 87 (312)
T ss_dssp EEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTT-CCEEEEEEEETTC-EEEEEETTSEEEEEEGGGSCC-------
T ss_pred EEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCC-CEEEEEEEECCCC-EEEEEECCCeEEEEEHHHCCCCCccCCC
Confidence 488889999999876543211 11 11222 3344444433323 57788888987776553221100000
Q ss_pred cccceeeEeeccCCCeEEEEEcc---CCCEEEEEeCCCcEEEEeCCCC-------ceEEEEeccCCCeEEEEEccCCCEE
Q 004214 368 MNLKAKAVVAAHGKDINSLAVAP---NDSLVCTGSQDRTACVWRLPDL-------VSVVTFRGHKRGIWSVEFSPVDQVV 437 (768)
Q Consensus 368 ~~~~~~~~~~~~~~~i~~~~~s~---~~~~l~~~~~dg~i~i~d~~~~-------~~~~~~~~~~~~v~~v~~s~~~~~l 437 (768)
........ ......|.++...+ ++..++..+..|.++...+... .....+.. ...+..+.....+..+
T Consensus 88 ~~i~~~l~-l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~~~i 165 (312)
T 1suu_A 88 QNISELIN-LGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKDEKV 165 (312)
T ss_dssp CBGGGTSC-CCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTTCEE
T ss_pred cChhhccC-CCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCCCEE
Confidence 00000001 11234455554433 4667888899999999887433 22222332 4455555555545667
Q ss_pred EEeeCCCcEEEEeCCCC---------ceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCC-------eEEEE
Q 004214 438 ITASGDKTIKIWSISDG---------SCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTG-------ECIAT 501 (768)
Q Consensus 438 ~t~~~d~~i~iwd~~~~---------~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~-------~~~~~ 501 (768)
+..+.+|.+..+....- ...-.+. ....|..+...+++..+++.+..|..+...+... +-+..
T Consensus 166 ~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~-~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~~~~~R~~kGv~~ 244 (312)
T 1suu_A 166 ICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLK-EGDLFVKVLSVKENPYLLIVSENGYGKRLNMSKISELKRGATGYTS 244 (312)
T ss_dssp EEEETTSEEEEEEGGGSCBCCTTBCCEECCCCC-TTCCEEEEEECTTCSEEEEEETTSEEEEEEGGGSCBCCTTCCCEEC
T ss_pred EEEeCCCcEEEEEHHHccccCCCCCCeEeEEeC-CCCEEEEEEEECCCCeEEEEECCCceEEEEHHHhcccCCCCCCEEe
Confidence 78888899988887541 1222232 2445666665556678889999999998887532 11222
Q ss_pred ec---cCCCcEEEEEEcCCCCEEEEEeCCCcEE
Q 004214 502 YD---KHEDKIWALAVGKKTEMFATGGSDALVN 531 (768)
Q Consensus 502 ~~---~~~~~v~~l~~s~~~~~l~s~~~dg~v~ 531 (768)
+. ...+.+.++....+...+...+..|.+.
T Consensus 245 ~~~~k~~~~~lv~~~~~~~~~~l~~~t~~g~~~ 277 (312)
T 1suu_A 245 YKKSDKKAGSVVDAIAVSEDDEILLVSKRSKAL 277 (312)
T ss_dssp SCTTCTTTCSEEEEEEECTTCEEEEEETTCEEE
T ss_pred eEccCCCCCeEEEEEEeCCCCEEEEEeCCCeEE
Confidence 22 2234454443333445555666667543
No 363
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=78.44 E-value=62 Score=32.94 Aligned_cols=243 Identities=9% Similarity=0.040 Sum_probs=115.9
Q ss_pred EEEEeeCCcEEEEEEcCCc-eeeeecCCc--eeecccccCcccceeEEEEccCCCceEEEEecCeEEEEee--ccCccc-
Q 004214 152 HFITVGERGIVRMWNADSA-CLYEQKSSD--VTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTT--VEVPEK- 225 (768)
Q Consensus 152 ~~~~~~~~g~i~iwd~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~--~~~~~~- 225 (768)
+.+....+|.|+.|-.... ++=...... ........ ... ....+.......++.+.+|.++.|-. ......
T Consensus 86 h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~-~~~--~i~~va~G~~hs~al~~~G~v~~wG~~~n~~GqlG 162 (423)
T 3mvd_K 86 HNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLID-LPG--KALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMG 162 (423)
T ss_dssp EEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECC-CSS--CEEEEEECSSEEEEEETTSCEEEEECEECSSSEEE
T ss_pred eEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEc-CCC--CEEEEEcCcCeEEEEeCCCeEEEEeCCCCCCCCcC
Confidence 6677788999999976543 211000000 00000000 011 23345556677788899999999985 221110
Q ss_pred ---ceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceee-----------------------eeee
Q 004214 226 ---KMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCS-----------------------YVLA 279 (768)
Q Consensus 226 ---~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~-----------------------~~~~ 279 (768)
......... ......|..++. ...+.++-+.+|.|+.|-....-.+ ....
T Consensus 163 ~~~~~~~~~p~~-~~~~~~i~~va~---G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~ 238 (423)
T 3mvd_K 163 LTIDGNKRTPID-LMEGTVCCSIAS---GADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLII 238 (423)
T ss_dssp SBTTBCEEEEEE-SSTTCCEEEEEE---CSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECC
T ss_pred cCCCCCCceeeE-ecCCCcEEEEec---CCCeEEEEecCCeEEEeeCCcCCccCCCcccccccccccccccccCCeEEee
Confidence 000111111 122345666664 4456777788899999965432111 1111
Q ss_pred CCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCC-----------ceEEEeeecccCcEEEEEEecCCCcEEEEEeC
Q 004214 280 GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES-----------RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSS 348 (768)
Q Consensus 280 ~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~ 348 (768)
.....|..+. . . ....++.-..+|.|..|-... .............|..++.... +.+.-..
T Consensus 239 ~~~~~v~~i~--~-g-~~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~v~~ia~G~~---ht~alt~ 311 (423)
T 3mvd_K 239 TRAKPFEAIW--A-T-NYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAGGQH---HTVILTT 311 (423)
T ss_dssp TTCCCEEEEE--E-E-TTEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEECCCSEEEEEECSS---EEEEEET
T ss_pred cCCccEEEEE--E-C-CcEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcCCCCeEEEEcccC---eEEEEeC
Confidence 1122344442 1 1 222233336788999985322 1111111111345666665433 5667788
Q ss_pred CCeEEEEeCCCCCCCCcccc-c-cceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 004214 349 DHTIKVWSFDGLSDDAEQPM-N-LKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLP 410 (768)
Q Consensus 349 dg~i~iwd~~~~~~~~~~~~-~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~ 410 (768)
+|.|..|-............ . .............|..++.... ..++-+.||.|+.|=..
T Consensus 312 ~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~~v~~ia~G~~--hs~alt~~G~v~~wG~n 373 (423)
T 3mvd_K 312 DLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCGEV--CSYAVTIDGKLYSWGSG 373 (423)
T ss_dssp TCCEEEEECCGGGTTCSSSCCSCEEEEEECTTCCSCEEEEEEETT--EEEEEETTSCEEEEECC
T ss_pred CCcEEEEECCCCCCCCCCCccccccCceEeccCCCCEEEEEcCCC--eEEEEcCCCCEEEECCC
Confidence 99999997543211100000 0 0011111112225666665433 33444678888888654
No 364
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=77.43 E-value=50 Score=31.31 Aligned_cols=217 Identities=17% Similarity=0.174 Sum_probs=112.2
Q ss_pred EEEEcC---CCcEEEEEEeeCCCccEEEEEeCCCcEEE---EECCCCeeEEEecCccceeEEEEEcC-CCCEEEEEeCCC
Q 004214 24 HYFKGH---KGVVSSILFHPDTDKSLLFSGSDDATVRV---WDLLAKKCVATLDKHFSRVTSMAITS-DGSTLISAGRDK 96 (768)
Q Consensus 24 ~~l~gh---~~~V~~l~~spd~~~~~l~sg~~dg~I~i---Wd~~~~~~~~~l~~h~~~V~~l~fs~-d~~~L~s~~~dg 96 (768)
+..+|| .+.+..+......++ |+.-+.+|.++- |++..++....+.. ...|..+.... +..+++.++.+|
T Consensus 14 r~~~g~~~~gD~~~~~~~~~t~~~--ll~fT~~G~v~~~~~~~lp~~~~~~ll~~-~e~i~~v~~~~~~~~~~v~~T~~G 90 (276)
T 3no0_A 14 IPVEELPLEKAPVVNILRVPFTEG--LFLVSNRGRVYWIAGSQALQGSKVSLKSR-EEKIVGAFIREKFGNRLLLATKKG 90 (276)
T ss_dssp EEGGGCCSSCCCEEEEEEEETTSC--EEEEETTSEEEEECSHHHHTSEECCCSST-TCCEEEEEEGGGSCSEEEEEETTS
T ss_pred eeccCCCCCCCeEEEEEEECCCCE--EEEEcCCCeEEEEEhhhCccCcccccCCC-CCEEEEEECCcCCCCEEEEEeCCC
Confidence 344565 345666666655555 555667776553 44433221111432 34565554322 567999999999
Q ss_pred eEEEEECCCCe------eeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCc
Q 004214 97 VVNLWDLRDYS------CKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSA 170 (768)
Q Consensus 97 ~i~vWd~~~~~------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~ 170 (768)
.++-..+.... ....+...+.+..+..... ...++..+..|.+..+....-
T Consensus 91 ~iKr~~l~~~~~~~~G~~~i~lkegD~l~~~~~~~~-----------------------~~~ill~T~~G~~~r~~~~ei 147 (276)
T 3no0_A 91 YVKKIPLAEFEYKAQGMPIIKLTEGDEVVSIASSVD-----------------------ETHILLFTKKGRVARFSVREV 147 (276)
T ss_dssp EEEEEEGGGTTTCSTTEECSCCCTTCCEEEEEECCS-----------------------SCEEEEEETTSEEEEEEGGGS
T ss_pred EEEEEEHHHhhhhcCCeEEEecCCCCEEEEEEEeCC-----------------------CCEEEEEECCCEEEEEEhhhC
Confidence 99998876643 1111111222222222211 226777888888777765433
Q ss_pred eeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecC
Q 004214 171 CLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGE 250 (768)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 250 (768)
........... .... .....+..+...+.+..++.++..|......+...+.....-.-...+ ...+.+..+....
T Consensus 148 p~~gR~a~Gv~-~i~L-~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~- 223 (276)
T 3no0_A 148 PPSTPGARGVQ-GIKL-EKNDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIK- 223 (276)
T ss_dssp CBCCTTCCCEE-CCCC-CTTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEES-
T ss_pred CCcCCCCCCEE-EEcc-CCCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeC-
Confidence 22111111111 1111 223455555555667788999999999888876654321110000011 2234555554443
Q ss_pred CCCEEEEEeCCCcEEE--EECC
Q 004214 251 EEQYLAVATNIEQVQV--YDLS 270 (768)
Q Consensus 251 ~~~~l~~~~~~~~i~i--~d~~ 270 (768)
++..++..+.+|.+.. ++..
T Consensus 224 ~~~~i~~~t~~G~~ir~~~~~~ 245 (276)
T 3no0_A 224 EEVELLITTKNGKAFYDKINQK 245 (276)
T ss_dssp SEEEEEEEETTSCEEEEEEEGG
T ss_pred CCCEEEEEcCCCeEEEeeeCHH
Confidence 4446666777777777 7654
No 365
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=76.57 E-value=64 Score=32.11 Aligned_cols=203 Identities=9% Similarity=0.063 Sum_probs=110.8
Q ss_pred eEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCccccee--
Q 004214 151 IHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKME-- 228 (768)
Q Consensus 151 ~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~-- 228 (768)
..+++.+.+|.|+--.+..-......... ..... ....+.+..+......+.+++.+..|.++.+.....+.....
T Consensus 8 ~~~v~lT~~GyIKr~~l~~y~~~~r~g~g-~~~~~-lke~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r~a~ 85 (370)
T 3l6v_A 8 DVVVTLSHAGYAKRQPVSAYRAQRRGGRG-RSAAS-TKEEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGSNAR 85 (370)
T ss_dssp CEEEEEESSCEEEEEEHHHHHHTCCCCCC-SEEEE-CSCCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTSC
T ss_pred CEEEEEeCCCEEEEeeHHHhhhhccCCCC-ceecc-cCCCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCcccC
Confidence 47899999999987654322111100000 00011 111244555556667788999999999998876655432110
Q ss_pred -eEEEee-ecccCCceeEEEEec--CCCCEEEEEeCCCcEEEEECCCcee-------eeeeeCCccceEEEeeeeecCCC
Q 004214 229 -LILSKR-LVGYNEEILDLKFLG--EEEQYLAVATNIEQVQVYDLSSMSC-------SYVLAGHSEIVLCLDTCALSSGK 297 (768)
Q Consensus 229 -~~~~~~-~~~~~~~i~~~~~~~--~~~~~l~~~~~~~~i~i~d~~~~~~-------~~~~~~~~~~v~~l~~~~~~~~~ 297 (768)
.+.... .......|..+.... ..+.+++.++..|.++...+..... ...+.. .+.+..+. ....+.
T Consensus 86 G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~-~d~lv~v~--~~~~~~ 162 (370)
T 3l6v_A 86 GRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDE-GDALVGVA--LTDGDR 162 (370)
T ss_dssp CEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCT-TCCEEEEE--EECSCC
T ss_pred CcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCC-CCEEEEEE--EeCCCc
Confidence 111110 012355677766553 2456899999999999987643221 122333 33344433 333444
Q ss_pred EEEEEEeCCCeEEEEeCCC---------ceEEEeeecccCcEEEEEEecC------------------------------
Q 004214 298 ILIVTGSKDNSVRLWDSES---------RCCVGVGTGHMGAVGAVAFSKK------------------------------ 338 (768)
Q Consensus 298 ~~l~~~~~dg~i~iwd~~~---------~~~~~~~~~~~~~v~~~~~~~~------------------------------ 338 (768)
. ++..+.+|.+..++... |...-.+. ....|.++...+.
T Consensus 163 ~-i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~-~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~~ 240 (370)
T 3l6v_A 163 D-VLLFASNGKTVRFGESTVRSMGRTATGVRGIRLA-KGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDV 240 (370)
T ss_dssp E-EEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEEEECCC-----------------------------
T ss_pred e-EEEEeCCCeEEEEEccccCccCCCCCCeeeEEeC-CCCEEEEEEEecccccccccccccccccccccccccccccccc
Confidence 4 77788888888886432 11111111 2234544444431
Q ss_pred ----CCcEEEEEeCCCeEEEEeCCCC
Q 004214 339 ----LQNFLVSGSSDHTIKVWSFDGL 360 (768)
Q Consensus 339 ----~~~~l~s~~~dg~i~iwd~~~~ 360 (768)
....+++.+..|..+...+...
T Consensus 241 ~~~~~~~~il~vTe~G~gKrt~~~e~ 266 (370)
T 3l6v_A 241 ADNGDVAYILTATENGYGKRTPLAEY 266 (370)
T ss_dssp ------CEEEEEETTSEEEEEEGGGS
T ss_pred ccccCCceEEEeeCCCCEEEEEHHHh
Confidence 2336888999999998887643
No 366
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=75.18 E-value=1.1e+02 Score=34.22 Aligned_cols=150 Identities=13% Similarity=0.142 Sum_probs=71.6
Q ss_pred cceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeec-------ccCcEEEEEEecCCCcEEEEEeCCCe----
Q 004214 283 EIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTG-------HMGAVGAVAFSKKLQNFLVSGSSDHT---- 351 (768)
Q Consensus 283 ~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~l~s~~~dg~---- 351 (768)
..|.++. +.+.+...+++++..|.|...+-....- ..+.. ....+.++++.|.....++.+..+..
T Consensus 15 g~i~~i~--~~p~~~~~~~a~~~~ggv~rS~DgG~tW-~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~ 91 (789)
T 1sqj_A 15 GYITGIV--AHPKTKDLLYARTDIGGAYRWDAGTSKW-IPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEW 91 (789)
T ss_dssp SCEEEEE--ECSSSTTCEEEEESSSCEEEEETTTTEE-EESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSC
T ss_pred CcEEEEE--ECCCCCCEEEEEecCCCEEEecCCCCCe-eECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCcc
Confidence 4677776 5555443466777777766555332222 22222 13469999999865445555543311
Q ss_pred EEEEeCCCCCCCCccccccceeeEe-e-----ccCCCeEEEEEccC-CCEEEEEeCCCcEEEEeCC-CCceEEEEec---
Q 004214 352 IKVWSFDGLSDDAEQPMNLKAKAVV-A-----AHGKDINSLAVAPN-DSLVCTGSQDRTACVWRLP-DLVSVVTFRG--- 420 (768)
Q Consensus 352 i~iwd~~~~~~~~~~~~~~~~~~~~-~-----~~~~~i~~~~~s~~-~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~--- 420 (768)
-.+|.-..... ........ . .....+..++++|. ...+..+...+. ||... .++--..+..
T Consensus 92 ~~v~~S~DgG~------TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~g--l~~S~DgG~TW~~~~~~~~ 163 (789)
T 1sqj_A 92 AAFYVSEDRGQ------SFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEG--IWKSSDRAKTWTNVTSIPD 163 (789)
T ss_dssp CEEEEESSTTS------EEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSC--EEEESSTTSSCEEETTSCC
T ss_pred cEEEEECCCCC------cceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCC--EEEECCCCcccCCCccCcc
Confidence 23333222211 11111000 0 00113556888874 445556653443 33322 2222222221
Q ss_pred ---cCCCeEEEEEccC-CCEEEEeeCC
Q 004214 421 ---HKRGIWSVEFSPV-DQVVITASGD 443 (768)
Q Consensus 421 ---~~~~v~~v~~s~~-~~~l~t~~~d 443 (768)
....+..+.++|. +..++++..+
T Consensus 164 ~~~~~~~~~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 164 AFTNGIGYTSVIFDPERNGTIYASATA 190 (789)
T ss_dssp CCSTTTCEEEEEECTTSTTCEEEEESS
T ss_pred ccCCCCCeEEEEECCCCCCEEEEEEcC
Confidence 1245788999884 3455555544
No 367
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=74.42 E-value=64 Score=31.11 Aligned_cols=232 Identities=9% Similarity=0.001 Sum_probs=120.7
Q ss_pred EEEEEeCCCeEEEEeCCCceEEE---------eeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccc
Q 004214 299 LIVTGSKDNSVRLWDSESRCCVG---------VGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMN 369 (768)
Q Consensus 299 ~l~~~~~dg~i~iwd~~~~~~~~---------~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 369 (768)
++++.+.+|.|+--.+..-.... .+..+ ..+..+....... .++..+..|.+.-+............ .
T Consensus 5 ~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~-D~l~~~~~~~~~~-~ll~fT~~G~~~~~~~~elp~~~~~a-~ 81 (307)
T 1zi0_A 5 VVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEE-DFIDRLLVANTHD-HILCFSSRGRVYSMKVYQLPEATRGA-R 81 (307)
T ss_dssp EEEEEETTSEEEEEECC---------------------CCEEEEEEEETTC-EEEEEETTSEEEEEEGGGSCCCCSSS-C
T ss_pred EEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCC-CEEEEEEEECCCC-EEEEEECCCEEEEEEhhHCcCCCCCC-C
Confidence 47888899999877665422211 11222 3333333333323 57777788876655443221111000 0
Q ss_pred ccee--eEeeccCCCeEEEEEc---cCCCEEEEEeCCCcEEEEeCCCCc-------eEEEEeccCCCeEEEEEccCCCEE
Q 004214 370 LKAK--AVVAAHGKDINSLAVA---PNDSLVCTGSQDRTACVWRLPDLV-------SVVTFRGHKRGIWSVEFSPVDQVV 437 (768)
Q Consensus 370 ~~~~--~~~~~~~~~i~~~~~s---~~~~~l~~~~~dg~i~i~d~~~~~-------~~~~~~~~~~~v~~v~~s~~~~~l 437 (768)
..+. .........|.++..- +++.+++..+.+|.++...+.... ....+..+ ..+..+........+
T Consensus 82 G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~~~i 160 (307)
T 1zi0_A 82 GRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGEDEV 160 (307)
T ss_dssp CEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTTCEE
T ss_pred CeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCCCEE
Confidence 0000 0011233456655442 346678899999999998764221 11223333 445454444445566
Q ss_pred EEeeCCCcEEEEeCCCC---------ceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCe---------EE
Q 004214 438 ITASGDKTIKIWSISDG---------SCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE---------CI 499 (768)
Q Consensus 438 ~t~~~d~~i~iwd~~~~---------~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~---------~~ 499 (768)
+..+.+|.+..++...- ...-.+. ....|..+...+++..+++.+..|.++-.++.... ..
T Consensus 161 ~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~~~ 239 (307)
T 1zi0_A 161 MLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVIS 239 (307)
T ss_dssp EEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCCEES
T ss_pred EEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCCEEe
Confidence 67777888888876431 1111222 33556666555566788899999999888764321 12
Q ss_pred EEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 004214 500 ATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHD 535 (768)
Q Consensus 500 ~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~ 535 (768)
..+..-.+.+..+....+...++..+.+|.+.-...
T Consensus 240 ~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~ 275 (307)
T 1zi0_A 240 IKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRV 275 (307)
T ss_dssp SCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEG
T ss_pred eEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEec
Confidence 222223355555444344555667777777665554
No 368
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=73.69 E-value=67 Score=31.04 Aligned_cols=203 Identities=16% Similarity=0.196 Sum_probs=113.7
Q ss_pred ceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceee
Q 004214 150 EIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMEL 229 (768)
Q Consensus 150 ~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~ 229 (768)
+..+++.+.+|.|+--.+..-......... ..... ....+.+..+......+.++..+..|.++.+.....+.....-
T Consensus 8 e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g-~~~~~-lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~ 85 (312)
T 1suu_A 8 ENIVVMLTKKGFLKRLSQNEYKLQGTGGKG-LSSFD-LNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRAS 85 (312)
T ss_dssp CEEEEEEETTCBEEEEEGGGSCBCCSSCCC-EECCC-CCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-----
T ss_pred CCEEEEEeCCCEEEEeEHHHhhccccCCCC-ceecc-cCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccC
Confidence 347889999999987766433211111000 00111 1223445555566677889999999999988876544321100
Q ss_pred ---EEEee-ecccCCceeEEEEecC--CCCEEEEEeCCCcEEEEECCCce-------eeeeeeCCccceEEEeeeeecCC
Q 004214 230 ---ILSKR-LVGYNEEILDLKFLGE--EEQYLAVATNIEQVQVYDLSSMS-------CSYVLAGHSEIVLCLDTCALSSG 296 (768)
Q Consensus 230 ---~~~~~-~~~~~~~i~~~~~~~~--~~~~l~~~~~~~~i~i~d~~~~~-------~~~~~~~~~~~v~~l~~~~~~~~ 296 (768)
+.... .....+.|..+..... +..+++..+..|.++...+.... ....+.. .+.+..+. ...++
T Consensus 86 ~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~--~~~~~ 162 (312)
T 1suu_A 86 KGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAE--IVFKD 162 (312)
T ss_dssp --CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEE--EECTT
T ss_pred CCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEE--EeCCC
Confidence 00000 0122345655544432 46678889999999998874322 2223333 34454443 33444
Q ss_pred CEEEEEEeCCCeEEEEeCCC---------ceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCC
Q 004214 297 KILIVTGSKDNSVRLWDSES---------RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGL 360 (768)
Q Consensus 297 ~~~l~~~~~dg~i~iwd~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 360 (768)
.. ++..+.+|.+..+.... |...-.+. ....|.++...+++. .+++.+..|..+...+...
T Consensus 163 ~~-i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~-~~d~vv~~~~v~~~~-~l~~vt~~G~~kr~~~~e~ 232 (312)
T 1suu_A 163 EK-VICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLK-EGDLFVKVLSVKENP-YLLIVSENGYGKRLNMSKI 232 (312)
T ss_dssp CE-EEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCC-TTCCEEEEEECTTCS-EEEEEETTSEEEEEEGGGS
T ss_pred CE-EEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeC-CCCEEEEEEEECCCC-eEEEEECCCceEEEEHHHh
Confidence 44 77888999998887643 11111222 234555555544434 5788899999999887643
No 369
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=71.64 E-value=1.6e+02 Score=34.58 Aligned_cols=38 Identities=21% Similarity=0.385 Sum_probs=31.8
Q ss_pred cEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEec
Q 004214 466 SVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD 503 (768)
Q Consensus 466 ~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 503 (768)
.+.+++..++..++++-+.|+++|||++.+++++.+..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 44556667788899999999999999999999988753
No 370
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=71.63 E-value=77 Score=30.81 Aligned_cols=250 Identities=12% Similarity=0.117 Sum_probs=130.7
Q ss_pred eEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccce---
Q 004214 151 IHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKM--- 227 (768)
Q Consensus 151 ~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~--- 227 (768)
..+++.+.+|.|+--.+..-... ... .. .....+.+.........+.+++.+..|.++.+.....+....
T Consensus 6 ~~~v~lT~~G~IKr~~~~~~~~~--~~~----~~-~lke~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~ 78 (323)
T 1wp5_A 6 DVIVTVTKDGYVKRTSLRSYAAS--NGQ----DF-AMKDTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDL 78 (323)
T ss_dssp EEEEEEETTCEEEEEEHHHHHHT--TTC----CC-CCCTTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSC
T ss_pred cEEEEEeCCCEEEEeEHHHhhhc--Ccc----cc-ccCCCCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCC
Confidence 47888999999987654321100 000 00 112234555666677888999999999998887766553321
Q ss_pred eeEEEeee-cccCCceeEEEEecC--CCCEEEEEeCCCcEEEEECCCcee--------eeeeeCCccceEEEeeeeecCC
Q 004214 228 ELILSKRL-VGYNEEILDLKFLGE--EEQYLAVATNIEQVQVYDLSSMSC--------SYVLAGHSEIVLCLDTCALSSG 296 (768)
Q Consensus 228 ~~~~~~~~-~~~~~~i~~~~~~~~--~~~~l~~~~~~~~i~i~d~~~~~~--------~~~~~~~~~~v~~l~~~~~~~~ 296 (768)
-.+....+ ......|..+....+ ++.+++.++..|.++-..+..... ...+... +.+..+. ....+
T Consensus 79 G~~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~-d~lv~~~--~~~~~ 155 (323)
T 1wp5_A 79 GQHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKND-DQVVDVH--LTDGM 155 (323)
T ss_dssp CEEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTT-CCEEEEE--EECSC
T ss_pred CcChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCC-CEEEEEE--EeCCC
Confidence 11111111 123345666654432 356789999999999988743221 1123322 4444443 33344
Q ss_pred CEEEEEEeCCCeEEEEeCCCce-------EEEeee-cccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCcccc
Q 004214 297 KILIVTGSKDNSVRLWDSESRC-------CVGVGT-GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPM 368 (768)
Q Consensus 297 ~~~l~~~~~dg~i~iwd~~~~~-------~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 368 (768)
.. ++..+.+|.+..++...-. -+..+. .....|.++...+++...++..+..|..+..++...........
T Consensus 156 ~~-i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~k 234 (323)
T 1wp5_A 156 NE-LFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKR 234 (323)
T ss_dssp SE-EEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSC
T ss_pred CE-EEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCC
Confidence 44 7778889998888754211 111111 12344666654444332578888999988887764321110000
Q ss_pred ccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004214 369 NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPD 411 (768)
Q Consensus 369 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~ 411 (768)
..............+..+....++..++..+.+|.+..+.+..
T Consensus 235 Gv~~~~~~~~~~~~l~~~~~v~~~~~i~~it~~g~~ir~~~~~ 277 (323)
T 1wp5_A 235 GVVILRELKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVGD 277 (323)
T ss_dssp CEECSCCCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGGG
T ss_pred CEECeeecCCCCceEEEEEEeCCCCeEEEEeCCCeEEEEEhhh
Confidence 0001111111222344333323344566667777776666543
No 371
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=71.47 E-value=1.5e+02 Score=34.03 Aligned_cols=38 Identities=21% Similarity=0.385 Sum_probs=33.6
Q ss_pred cEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEec
Q 004214 466 SVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD 503 (768)
Q Consensus 466 ~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 503 (768)
.+.+++..++..++++-+.|+++|+|++.+++++.+..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 56777778888999999999999999999999998764
No 372
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=69.27 E-value=97 Score=31.00 Aligned_cols=135 Identities=11% Similarity=-0.048 Sum_probs=64.1
Q ss_pred cEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeecc--CCCeEEEEEcc-CCCEEEEEeC-----
Q 004214 329 AVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAH--GKDINSLAVAP-NDSLVCTGSQ----- 400 (768)
Q Consensus 329 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~s~-~~~~l~~~~~----- 400 (768)
.+.++.+.|.....+..+...+ |...+-... ........... ...+.+++++| +...+.+++.
T Consensus 233 ~~~~i~~~~~~~~~l~vg~~~g-l~~s~D~G~--------tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~ 303 (394)
T 3b7f_A 233 DPHCVVQHPAAPDILYQQNHCG-IYRMDRREG--------VWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVFPMDGSDV 303 (394)
T ss_dssp CEEEEEECSSSTTEEEEEETTE-EEEEETTTT--------EEECGGGGSCTTTCSCEEEEEECSSCTTCEEEEECBCCSS
T ss_pred ceeEEEECCCCCCEEEEEcCCe-EEEeCCCCC--------cceECCCCCCCCCccceEEEEECCCCCCEEEEEeccCCcc
Confidence 4889999987555677776554 333321111 00000000000 02356788887 3344555432
Q ss_pred ------CCcEEEEeCCC-CceEEEEe-ccCC-------CeEEEEEccCC-CEEEEeeCCCcEEEEeCCCCceeEEeecCC
Q 004214 401 ------DRTACVWRLPD-LVSVVTFR-GHKR-------GIWSVEFSPVD-QVVITASGDKTIKIWSISDGSCLKTFEGHT 464 (768)
Q Consensus 401 ------dg~i~i~d~~~-~~~~~~~~-~~~~-------~v~~v~~s~~~-~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~ 464 (768)
++...+|...+ ++.-..+. +-.. ....++++|.. ..|+.++.++.|..- ...|+--..+..+-
T Consensus 304 w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l~~S-~D~G~tW~~~~~~l 382 (394)
T 3b7f_A 304 WPRVSPGGKPAVYVTRDAGESWQRQDRGLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEIWAS-ADEGEHWQCIASHL 382 (394)
T ss_dssp TTCCBCCSSCCEEEESSTTSCCEEECBTSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSCEEEE-SSTTSBCEEEECSC
T ss_pred ceeecCCCceeEEEECCCCCCceECCCCCCCccccceEEEEEEEECCCCCCEEEEEeCCCeEEEE-CCCCCCceEcccCC
Confidence 23345555443 23222222 1110 11357888753 446666655655432 33455445555455
Q ss_pred CcEEEEEEE
Q 004214 465 SSVLRASFL 473 (768)
Q Consensus 465 ~~v~~~~~s 473 (768)
..+.++.|.
T Consensus 383 p~~~~v~~~ 391 (394)
T 3b7f_A 383 PHIYAVQSA 391 (394)
T ss_dssp SCEEEEEEE
T ss_pred CCeeEEEEe
Confidence 567777664
No 373
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=68.77 E-value=86 Score=30.20 Aligned_cols=252 Identities=12% Similarity=0.041 Sum_probs=129.8
Q ss_pred eEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccce---
Q 004214 151 IHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKM--- 227 (768)
Q Consensus 151 ~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~--- 227 (768)
..+++.+.+|.|+--.+..-......... .........+.+.........+.+++.+..|.++.+.....+....
T Consensus 4 ~~~v~~T~~G~iKr~~~~~~~~~~~~~~g--~~~~~~ke~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a~ 81 (307)
T 1zi0_A 4 DVVVTLSHQGYVKYQPLSEYEAQRRGGKG--KSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGAR 81 (307)
T ss_dssp EEEEEEETTSEEEEEECC----------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSSC
T ss_pred cEEEEEeCCCEEEEeeHHHhhhhccCCCC--ceeeeeCCCCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCCC
Confidence 46888999999987665443211111000 0000011224445556667788999999999998887766554321
Q ss_pred eeEEEeee-cccCCceeEEEEec--CCCCEEEEEeCCCcEEEEECCCce-------eeeeeeCCccceEEEeeeeecCCC
Q 004214 228 ELILSKRL-VGYNEEILDLKFLG--EEEQYLAVATNIEQVQVYDLSSMS-------CSYVLAGHSEIVLCLDTCALSSGK 297 (768)
Q Consensus 228 ~~~~~~~~-~~~~~~i~~~~~~~--~~~~~l~~~~~~~~i~i~d~~~~~-------~~~~~~~~~~~v~~l~~~~~~~~~ 297 (768)
-.+....+ ....+.|..+.... .++.+++..+..|.++-..+.... ....+..+ +.+..+. ......
T Consensus 82 G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~--~~~~~~ 158 (307)
T 1zi0_A 82 GRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVD--LTSGED 158 (307)
T ss_dssp CEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEE--EECTTC
T ss_pred CeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEE--EeCCCC
Confidence 11111111 12345566665542 355678999999999998764221 11223334 4444443 333444
Q ss_pred EEEEEEeCCCeEEEEeCCC---------ceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCcccc
Q 004214 298 ILIVTGSKDNSVRLWDSES---------RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPM 368 (768)
Q Consensus 298 ~~l~~~~~dg~i~iwd~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 368 (768)
. ++..+.+|.+..++... |...-.+. ....|.++...+++. .+++.+..|.++-.++..........
T Consensus 159 ~-i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~-~ll~~T~~G~~Kr~~~~e~~~~~Rg~- 234 (307)
T 1zi0_A 159 E-VMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPRGDG-AILTATQNGYGKRTAVAEYPTKSRAT- 234 (307)
T ss_dssp E-EEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCCSSC-EEEEEETTSEEEEECGGGSCCCCTTS-
T ss_pred E-EEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEecCCC-EEEEEEcCCceEEEEHHHhccCCCCC-
Confidence 4 77788889888887532 11111122 234566665544433 68888999999988875432111000
Q ss_pred ccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004214 369 NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPD 411 (768)
Q Consensus 369 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~ 411 (768)
.......+....+.+..+....+...++..+.+|.+.-+....
T Consensus 235 kG~~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 235 KGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp CCEESSCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGGG
T ss_pred CCEEeeEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEeccc
Confidence 0000111112223444443333344555666777766666543
No 374
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=62.83 E-value=48 Score=39.12 Aligned_cols=38 Identities=29% Similarity=0.427 Sum_probs=32.3
Q ss_pred CeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEee
Q 004214 424 GIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFE 461 (768)
Q Consensus 424 ~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~ 461 (768)
.+.+++..++..++++-+.|+++|||++.+++++.+..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 34566677788999999999999999999999988754
No 375
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=61.05 E-value=1.4e+02 Score=29.81 Aligned_cols=176 Identities=8% Similarity=0.019 Sum_probs=91.4
Q ss_pred CcEEEEECCCc--eeeeeeeCC------ccceEEEeeeee-cC----CCEEEEEEeCCCeEEEEeCCCceEEEeeecc--
Q 004214 262 EQVQVYDLSSM--SCSYVLAGH------SEIVLCLDTCAL-SS----GKILIVTGSKDNSVRLWDSESRCCVGVGTGH-- 326 (768)
Q Consensus 262 ~~i~i~d~~~~--~~~~~~~~~------~~~v~~l~~~~~-~~----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-- 326 (768)
..|.+||+.+. +.++.+.-. ...+..+..-.. +. +....++=+..+.|.++|+.+++..+....+
T Consensus 123 pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~ 202 (381)
T 3q6k_A 123 PAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFK 202 (381)
T ss_dssp CEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGS
T ss_pred ceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCc
Confidence 46778888888 777665432 334555552211 11 3333344445788999999998776654210
Q ss_pred ----------------cCcEEEEEEecC----CCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeecc--CCCeE
Q 004214 327 ----------------MGAVGAVAFSKK----LQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAH--GKDIN 384 (768)
Q Consensus 327 ----------------~~~v~~~~~~~~----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~i~ 384 (768)
...+..++++|+ ++.+....-... ++|.+......... . .......... ...-.
T Consensus 203 pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~--~ly~V~T~~L~~~~-~-~~~v~~~G~kg~~s~~~ 278 (381)
T 3q6k_A 203 AERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAI--KVYSVNTKELKQKG-G-KLNPELLGNRGKYNDAI 278 (381)
T ss_dssp CCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCS--EEEEEEHHHHSSTT-C-CCCCEEEEECCTTCCEE
T ss_pred cccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCC--cEEEEEHHHhhCcc-h-hhceEEeeecCCCCCcc
Confidence 135777888876 443333332222 33433211000000 0 0111111111 23445
Q ss_pred EEEEc-cCCCEEEEEeCCCcEEEEeCCC-C---ceEEEEe-cc-CCCeEEEEEccCCCEEEEee
Q 004214 385 SLAVA-PNDSLVCTGSQDRTACVWRLPD-L---VSVVTFR-GH-KRGIWSVEFSPVDQVVITAS 441 (768)
Q Consensus 385 ~~~~s-~~~~~l~~~~~dg~i~i~d~~~-~---~~~~~~~-~~-~~~v~~v~~s~~~~~l~t~~ 441 (768)
.++++ .+|.++++--....|..|+..+ . .....+. .. -.-+..+.+.++|.+.+.+.
T Consensus 279 ~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~sn 342 (381)
T 3q6k_A 279 ALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMSN 342 (381)
T ss_dssp EEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEEC
T ss_pred eEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEEC
Confidence 67776 6788888878888999999875 1 1222222 11 12356666666666555543
No 376
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=60.82 E-value=1.4e+02 Score=29.98 Aligned_cols=285 Identities=11% Similarity=0.088 Sum_probs=134.8
Q ss_pred EEEEeeCCcEEEEEEcCCc-eeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecC-eEEEEeeccCcc----c
Q 004214 152 HFITVGERGIVRMWNADSA-CLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQ-QLLLYTTVEVPE----K 225 (768)
Q Consensus 152 ~~~~~~~~g~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-~i~~~~~~~~~~----~ 225 (768)
+.+....+|.|..|-.... ++=.............. .........+.......++.+.++ .++.|-...... .
T Consensus 27 hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~-~l~~~~i~~va~G~~ht~al~~~gg~v~~wG~n~~GqLG~g~ 105 (406)
T 4d9s_A 27 HSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLS-ALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGN 105 (406)
T ss_dssp EEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECG-GGTTSCEEEEEECSSEEEEEETTTTEEEEEECCGGGTTCSSS
T ss_pred eEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEec-ccCCCCEEEEEeCcceEEEEECCCCEEEEEcCCCCcCCCCCC
Confidence 5566778899999965443 11110000000000000 011122334445556666677765 899986443211 0
Q ss_pred ceeeEEEeeecc-cCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCcee-----------eeeeeC-CccceEEEeeee
Q 004214 226 KMELILSKRLVG-YNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSC-----------SYVLAG-HSEIVLCLDTCA 292 (768)
Q Consensus 226 ~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~-----------~~~~~~-~~~~v~~l~~~~ 292 (768)
............ ....|..++. ...+.++-+.+|.|+.|-....-. ...+.. ....|..++
T Consensus 106 ~~~~~~p~~v~~l~~~~i~~ia~---G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~i~~va--- 179 (406)
T 4d9s_A 106 SSDLFTPLPIKALHGIRIKQIAC---GDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVA--- 179 (406)
T ss_dssp CCCEEEEEECGGGTTCCEEEEEE---CSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTCCEEEEE---
T ss_pred CCccccceEecccCCCCEEEEEE---ChhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEecccCCCcEEEEe---
Confidence 011111122222 2235666664 455677778889999997543211 111111 112344443
Q ss_pred ecCCCEEEEEEeCCCeEEEEeCCCc----------e--EEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCC
Q 004214 293 LSSGKILIVTGSKDNSVRLWDSESR----------C--CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGL 360 (768)
Q Consensus 293 ~~~~~~~l~~~~~dg~i~iwd~~~~----------~--~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 360 (768)
.... ..+.-..+|.|+.|-.... . +..........|..++.... ..+.-..+|.|..|-....
T Consensus 180 -~G~~-hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~~---ht~~l~~~G~v~~wG~n~~ 254 (406)
T 4d9s_A 180 -AGAE-HTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWR---HTISVSYSGALYTYGWSKY 254 (406)
T ss_dssp -ECSS-EEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECSS---EEEEEETTCCEEEEECCTT
T ss_pred -cCCC-eEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEECCC---cEEEEcCCCCEEEeeCCCC
Confidence 1222 3555678999999954321 1 11111112245666665433 5666778999999976543
Q ss_pred CCCCcccc--ccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCc-----------eEEEEe-ccCCCeE
Q 004214 361 SDDAEQPM--NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLV-----------SVVTFR-GHKRGIW 426 (768)
Q Consensus 361 ~~~~~~~~--~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~-----------~~~~~~-~~~~~v~ 426 (768)
........ ...+..........|..++.. ....++-..||.|+.|=....- ....+. .....|.
T Consensus 255 GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G--~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~ 332 (406)
T 4d9s_A 255 GQLGHGDLEDHLIPHKLEALSNSFISQISGG--WRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVV 332 (406)
T ss_dssp STTCSSSCCCEEEEEECGGGTTSCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEECCGGGCCEE
T ss_pred CCCCCCCCcCccccEEecccCCCCEEEEEec--CCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEEeccCCCcEE
Confidence 21111000 111111111122345555543 3445555788999999643210 011111 1223455
Q ss_pred EEEEccCCCEEEEeeCCCcEEEEeCC
Q 004214 427 SVEFSPVDQVVITASGDKTIKIWSIS 452 (768)
Q Consensus 427 ~v~~s~~~~~l~t~~~d~~i~iwd~~ 452 (768)
.++.. ....++-..+|.|+.|-..
T Consensus 333 ~va~G--~~hs~alt~~G~v~~wG~n 356 (406)
T 4d9s_A 333 QVSCG--WRHTLAVTERNNVFAWGRG 356 (406)
T ss_dssp EEEEC--SSEEEEEETTSCEEEEECC
T ss_pred EEEeC--CCeEEEEeCCCCEEEecCC
Confidence 55544 3344444567888888754
No 377
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=60.70 E-value=1.7e+02 Score=30.77 Aligned_cols=268 Identities=9% Similarity=0.039 Sum_probs=140.4
Q ss_pred CCceeEEEEecCCCCEEEEEeCCCc----------------------------EEEEECCCceeeeeeeCC--ccc----
Q 004214 239 NEEILDLKFLGEEEQYLAVATNIEQ----------------------------VQVYDLSSMSCSYVLAGH--SEI---- 284 (768)
Q Consensus 239 ~~~i~~~~~~~~~~~~l~~~~~~~~----------------------------i~i~d~~~~~~~~~~~~~--~~~---- 284 (768)
...+.-..+..+...-+++.+.+|. +.++|-.+++.+....-. ...
T Consensus 178 yt~~~V~DlDGDGkaEIvv~TadGt~dg~g~~ig~~~~dyrn~~g~il~GpEyL~vfdG~TG~~l~~~~~~p~rg~~~~W 257 (591)
T 2zux_A 178 YTQFMVYDLDGDGKAEVAMKTADGTKDGTGKVIGNANADYRNEQGRVLSGPEYLTVFQGSTGKELVTANFEPARGNVSDW 257 (591)
T ss_dssp SCCCEEECSSSSSSCEEEEEECTTCBCTTSCBCSSTTCCCBCTTSCBCSSCCEEEEEETTTCCEEEEEECSSCCCCGGGG
T ss_pred cCceeEEEcCCCCcceEEEEccCCcccCCceEecccccccccccceeecCCcEEEEEeCCCCCEEecccCCCCCCccccc
Confidence 3345555555556666777766554 788888888877654321 111
Q ss_pred -----------eEEEeeeeecCCCEEEEEEe---CCCeEEEEeCCCceEEEee--ecc-----------cCcEEEEEEec
Q 004214 285 -----------VLCLDTCALSSGKILIVTGS---KDNSVRLWDSESRCCVGVG--TGH-----------MGAVGAVAFSK 337 (768)
Q Consensus 285 -----------v~~l~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~--~~~-----------~~~v~~~~~~~ 337 (768)
..+++ .......-++.+- ....+..||...+++.... ... ...+....+.-
T Consensus 258 GD~ygnR~drf~~~va--yLDG~~Ps~v~~rGyYtr~~v~A~d~~~~~L~~~W~~d~~~~~~~~~~gqg~h~~~vaDVDg 335 (591)
T 2zux_A 258 GDSYGNRVDRFLAGIA--YLDGQRPSLIMTRGYYAKTMLVAYNFRDGKLSKLWTLDSSKSGNEAFAGQGNHNLSIADVDG 335 (591)
T ss_dssp TCSSSSGGGCEEEEEE--CTTSSSCEEEEEECCSSSCEEEEEEEETTEEEEEEEEETTSTTCGGGSSCCCSCCEEECCSS
T ss_pred ccccccccccceeeEE--ECCCCCceEEEeccccceeEEEEEECCCCceEEEEEecCCCCCcccccccCCCCCeeEeCCC
Confidence 12222 2222222233332 1235888888777654332 211 02344455556
Q ss_pred CCCcEEEEEe----CCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccC--CCEEEEEeCCC----cEEEE
Q 004214 338 KLQNFLVSGS----SDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN--DSLVCTGSQDR----TACVW 407 (768)
Q Consensus 338 ~~~~~l~s~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~dg----~i~i~ 407 (768)
||..-++.|+ .||++ +|... ..|...+....|.|+ |..++.+..++ -..+.
T Consensus 336 DG~dEIv~Gs~~iD~dG~~-L~st~------------------~gHGDa~hv~dldP~r~GlEv~~~~E~~~~~~G~~~~ 396 (591)
T 2zux_A 336 DGKDEIIFGSMAVDHDGKG-MYSTG------------------LGHGDALHTGDLDPGRPGLEVFQVHEDKNAKYGLSFR 396 (591)
T ss_dssp SSSCEEEETTEEECTTSCE-EEECS------------------CCCCSCEEEECCCTTSSSCEEEEECCCTTSSCSEEEE
T ss_pred CCCceEEEeeeEECCCCCE-eeeCC------------------CCCCCeeEEeecCCCCCCcEEEEEecCCCCCCccEEE
Confidence 6665555544 34443 45432 368888888888886 45677666652 35568
Q ss_pred eCCCCceEEEEecc--CCCeEEEEEccCCC--EEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCC-EEEEE
Q 004214 408 RLPDLVSVVTFRGH--KRGIWSVEFSPVDQ--VVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGA-QIVSC 482 (768)
Q Consensus 408 d~~~~~~~~~~~~~--~~~v~~v~~s~~~~--~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~ 482 (768)
|..+++.+...... .+......|.|+.. -+.+ ++ .+|+. +|+.+.... ....-..+-|..|.. .|+-+
T Consensus 397 dA~tG~vlw~~~~~~d~Gr~~~~Didp~~pG~E~w~---~~--~l~~~-~G~~i~~~~-p~~~N~~i~WdGDl~relld~ 469 (591)
T 2zux_A 397 DAATGKILWGVYAGKDVGRGMAADIDPRYPGQEVWA---NG--SLYSA-KGVKIGSGV-PSSTNFGIWWDGDLLREQLDS 469 (591)
T ss_dssp ETTTCCEEEEECCSSCCCCEEEECCCTTSSSCEEEE---TT--EEECT-TSCBCSSCC-CSCCSEEECCSSSSSCEEEET
T ss_pred ECCCCcEEEEcCCCCCCCceeEEecCCCCCceEEEe---cC--ceECC-CCCEecCCC-CCCcceeEEECCCCcHhhhCC
Confidence 99999998877643 33444445666532 2222 22 46675 455544321 111223455655543 34432
Q ss_pred eCCCcEEEEECCCCe--EEEEecc-------CCCcEEEEEEcCCCC-EEEE-EeCCCcEEEEEcCC
Q 004214 483 GADGLVKLWTVRTGE--CIATYDK-------HEDKIWALAVGKKTE-MFAT-GGSDALVNLWHDST 537 (768)
Q Consensus 483 ~~dg~i~iwd~~~~~--~~~~~~~-------~~~~v~~l~~s~~~~-~l~s-~~~dg~v~vw~~~~ 537 (768)
+.|.-|+...++ .+.++.+ ...+..+..+--|.+ -++. ...+..|+||.-..
T Consensus 470 ---~~i~k~~~~~~~~~~l~~~~g~~snngtk~~P~l~aDi~GDwREEvI~~t~D~~~LrIYtt~~ 532 (591)
T 2zux_A 470 ---NRIDKWDYQNGVSKNMLTASGAAANNGTKATPTLQADLLGDWREEVVWRTEDSSALRIYTTTI 532 (591)
T ss_dssp ---TEEEEEETTTTEEEEEEECTTEECBSGGGCBCSEEECCSSSSSCEEEEEETTSSEEEEECCCC
T ss_pred ---ceEEecccCCCceeEEEeecccccCCCCCCCEeeEEeccccCeeEEEEEeCCCCeEEEEeCCC
Confidence 468888877776 3444432 122233333333422 3443 44455699997543
No 378
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=60.20 E-value=1.3e+02 Score=29.22 Aligned_cols=232 Identities=9% Similarity=0.028 Sum_probs=120.7
Q ss_pred EEEEEeCCCeEEEEeCCCc----eEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeC---CCCCCCCccccccc
Q 004214 299 LIVTGSKDNSVRLWDSESR----CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSF---DGLSDDAEQPMNLK 371 (768)
Q Consensus 299 ~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~---~~~~~~~~~~~~~~ 371 (768)
++++.+.+|.|+--.+... ..-..+... ..+..+....... .++..+..|.+.-+.. +......... ...
T Consensus 7 ~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke~-D~l~~~~~~~t~d-~ll~fT~~Gr~~~~~~~elp~~~r~a~G~-~i~ 83 (323)
T 1wp5_A 7 VIVTVTKDGYVKRTSLRSYAASNGQDFAMKDT-DRLLAMLEMNTKD-VLLLFTNKGNYLYCPVHELPDIRWKDLGQ-HIA 83 (323)
T ss_dssp EEEEEETTCEEEEEEHHHHHHTTTCCCCCCTT-CCEEEEEEEETTS-EEEEEETTSEEEEEEGGGSCBCCTTSCCE-EGG
T ss_pred EEEEEeCCCEEEEeEHHHhhhcCccccccCCC-CEEEEEEEECCCC-EEEEEECCCEEEEEEHHHCcCCCCCCCCc-Chh
Confidence 4788899999987654311 000112222 3343433333323 5777778887665544 3222111000 000
Q ss_pred eeeEeeccCCCeEEEEEcc---CCCEEEEEeCCCcEEEEeCCCCc--------eEEEEeccCCCeEEEEEccCCCEEEEe
Q 004214 372 AKAVVAAHGKDINSLAVAP---NDSLVCTGSQDRTACVWRLPDLV--------SVVTFRGHKRGIWSVEFSPVDQVVITA 440 (768)
Q Consensus 372 ~~~~~~~~~~~i~~~~~s~---~~~~l~~~~~dg~i~i~d~~~~~--------~~~~~~~~~~~v~~v~~s~~~~~l~t~ 440 (768)
.. ........|.++..-+ ++.+++.++.+|.++...+.... ....+.. ...+-.+........++..
T Consensus 84 ~~-i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e-~d~lv~~~~~~~~~~i~l~ 161 (323)
T 1wp5_A 84 NI-IPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKN-DDQVVDVHLTDGMNELFLV 161 (323)
T ss_dssp GT-SCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCT-TCCEEEEEEECSCSEEEEE
T ss_pred hc-cCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCC-CCEEEEEEEeCCCCEEEEE
Confidence 00 0111234455543333 25678899999999998874221 1112222 2445555444445567777
Q ss_pred eCCCcEEEEeCCCCc---------eeEEeecCCCcEEEEEEEeCCC-EEEEEeCCCcEEEEECCC-------CeEEEEec
Q 004214 441 SGDKTIKIWSISDGS---------CLKTFEGHTSSVLRASFLTRGA-QIVSCGADGLVKLWTVRT-------GECIATYD 503 (768)
Q Consensus 441 ~~d~~i~iwd~~~~~---------~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~-------~~~~~~~~ 503 (768)
+.+|.+..++...-. ....+. ....|.++...+++. .|++.+..|..+..++.. ++-+..+.
T Consensus 162 T~~G~~irf~~~ev~~~gR~a~GV~~i~L~-~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kGv~~~~ 240 (323)
T 1wp5_A 162 THNGYALWFDESEVSIVGVRAAGVKGMNLK-EGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVILR 240 (323)
T ss_dssp ETTSEEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECSC
T ss_pred eCCCcEEEEEHHHCcccCCCCcCEEEEEeC-CCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCCEECee
Confidence 788988888764311 111222 234566665555555 788889999888877653 22222222
Q ss_pred ---cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 004214 504 ---KHEDKIWALAVGKKTEMFATGGSDALVNLWHDS 536 (768)
Q Consensus 504 ---~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~ 536 (768)
.....+.++....++..++..+..|.+.-....
T Consensus 241 ~~~~~~~~l~~~~~v~~~~~i~~it~~g~~ir~~~~ 276 (323)
T 1wp5_A 241 ELKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVG 276 (323)
T ss_dssp CCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGG
T ss_pred ecCCCCceEEEEEEeCCCCeEEEEeCCCeEEEEEhh
Confidence 222245543333344556677778876655543
No 379
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=60.04 E-value=1.4e+02 Score=29.62 Aligned_cols=233 Identities=9% Similarity=0.021 Sum_probs=120.3
Q ss_pred cCCCEEEEEEeCCCeEEEEeCCC---------ceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeC---CCCC
Q 004214 294 SSGKILIVTGSKDNSVRLWDSES---------RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSF---DGLS 361 (768)
Q Consensus 294 ~~~~~~l~~~~~dg~i~iwd~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~---~~~~ 361 (768)
++.. ++++.+.+|.|+--.+.. +..-..++ ....+..+....... .++..+..|.+.-+.. +...
T Consensus 5 ~~e~-~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lk-e~D~l~~~~~~~t~d-~ll~fT~~G~~~~~~~~eip~~~ 81 (370)
T 3l6v_A 5 APED-VVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTK-EEDFIDQLWLVNTHD-TLLTFTSSGKVFWLPVHQLPEAG 81 (370)
T ss_dssp CCCC-EEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECS-CCCCEEEEEEECTTC-EEEEEETTSEEEEEEGGGSCBCC
T ss_pred cCCC-EEEEEeCCCEEEEeeHHHhhhhccCCCCceecccC-CCCEEEEEEEecCCC-EEEEEeCCCeEEEEEHHHCcCCC
Confidence 4444 488899999999765321 11222222 234555555544433 5777778887665543 3221
Q ss_pred CCCccccccceeeEeeccCCCeEEEEEcc---CCCEEEEEeCCCcEEEEeCCCCc-------eEEEEeccCCCeEEEEEc
Q 004214 362 DDAEQPMNLKAKAVVAAHGKDINSLAVAP---NDSLVCTGSQDRTACVWRLPDLV-------SVVTFRGHKRGIWSVEFS 431 (768)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~---~~~~l~~~~~dg~i~i~d~~~~~-------~~~~~~~~~~~v~~v~~s 431 (768)
...... ....... ......|.++..-+ ++.+|+.++..|.++...+.... ....+.. ...+-.+...
T Consensus 82 r~a~G~-~i~~ll~-L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~-~d~lv~v~~~ 158 (370)
T 3l6v_A 82 SNARGR-PIINWIP-LESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDE-GDALVGVALT 158 (370)
T ss_dssp TTSCCE-EGGGSCC-CCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCT-TCCEEEEEEE
T ss_pred cccCCc-CHhhccC-CCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCC-CCEEEEEEEe
Confidence 111000 0000001 12344555554432 45689999999999998864322 1122322 3344444444
Q ss_pred cCCCEEEEeeCCCcEEEEeCCCCc---------eeEEeecCCCcEEEEEEEe----------------------------
Q 004214 432 PVDQVVITASGDKTIKIWSISDGS---------CLKTFEGHTSSVLRASFLT---------------------------- 474 (768)
Q Consensus 432 ~~~~~l~t~~~d~~i~iwd~~~~~---------~~~~~~~~~~~v~~~~~s~---------------------------- 474 (768)
.....++..+.+|.+..++...-. ..-.+. ....|.++...+
T Consensus 159 ~~~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~-~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~ 237 (370)
T 3l6v_A 159 DGDRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLA-KGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAV 237 (370)
T ss_dssp CSCCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEEEECCC--------------------------
T ss_pred CCCceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeC-CCCEEEEEEEeccccccccccccccccccccccccccccc
Confidence 445566667777888777753211 111122 234555555444
Q ss_pred -------CCCEEEEEeCCCcEEEEECCCCe-------EEEEe--ccCCCcEEEEEEcCCCCEEEEEeCCCcEEEE
Q 004214 475 -------RGAQIVSCGADGLVKLWTVRTGE-------CIATY--DKHEDKIWALAVGKKTEMFATGGSDALVNLW 533 (768)
Q Consensus 475 -------~~~~l~s~~~dg~i~iwd~~~~~-------~~~~~--~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw 533 (768)
++.++++.+..|..+...+.... -+..+ ....+.+.++.+..++..++..+..|.+.-.
T Consensus 238 ~~~~~~~~~~~il~vTe~G~gKrt~~~e~~~~~Rg~kGv~~~k~~~~~g~lv~~~~v~~~d~i~liT~~G~~iR~ 312 (370)
T 3l6v_A 238 IDVADNGDVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERNGKLVRAVLLGSTDEVMLISDGGTLVRT 312 (370)
T ss_dssp ---------CEEEEEETTSEEEEEEGGGSCCBCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEETTCCEEEE
T ss_pred cccccccCCceEEEeeCCCCEEEEEHHHhcccccCCcceEEEEecCCCCcEEEEEEeCCCceEEEEcCCCeEEEe
Confidence 45689999999999888765322 12222 2223455554433444455555666665433
No 380
>3s6n_2 SurviVal of motor neuron protein-interacting PROT; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2leh_A
Probab=58.14 E-value=13 Score=35.11 Aligned_cols=45 Identities=13% Similarity=0.299 Sum_probs=39.1
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhccCC
Q 004214 600 IEKALHALGKEEIRQLLEYVREWNTKPKLCHVAQFVLFQLFNIHP 644 (768)
Q Consensus 600 ~~~~~~~l~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 644 (768)
.-..+..++...+..||+++..|+.......-...||+++|-.-.
T Consensus 179 ~l~~l~~ld~~~v~~LL~~~~~wl~~~~~~~~~~~WlyaLLa~Ld 223 (280)
T 3s6n_2 179 LLSIVSRMNQATVTSVLEYLSNWFGERDFTPELGRWLYALLACLE 223 (280)
T ss_dssp CHHHHTTSCHHHHHHHHHHHHHGGGTSCCCHHHHHHHHHHHHHCC
T ss_pred cHHHHHhCCHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhC
Confidence 446679999999999999999999887778888899999987763
No 381
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=52.12 E-value=53 Score=34.70 Aligned_cols=62 Identities=13% Similarity=0.091 Sum_probs=43.4
Q ss_pred CcEEEEEEeeCCCccEEEEEeC-----------CCcEEEEECCCCeeEEEecCc-cceeEEEEEcCCCCEEEEEe
Q 004214 31 GVVSSILFHPDTDKSLLFSGSD-----------DATVRVWDLLAKKCVATLDKH-FSRVTSMAITSDGSTLISAG 93 (768)
Q Consensus 31 ~~V~~l~~spd~~~~~l~sg~~-----------dg~I~iWd~~~~~~~~~l~~h-~~~V~~l~fs~d~~~L~s~~ 93 (768)
.....|+|.++|.. ++.+-.. ...|..++..+++....+.+. ...++.++|+||+++|+.+-
T Consensus 476 nsPDnL~fd~~G~L-Wf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGRL-WILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCE-EEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECCCCCE-EEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 45678999999874 3323221 125777777788877666654 35799999999999887664
No 382
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=51.09 E-value=2e+02 Score=28.80 Aligned_cols=279 Identities=11% Similarity=0.062 Sum_probs=136.3
Q ss_pred ceeEEEEecCCCCEEEEEeCCCcEEEEECCCcee-----------eeeeeC-CccceEEEeeeeecCCCEEEEEEeCCCe
Q 004214 241 EILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSC-----------SYVLAG-HSEIVLCLDTCALSSGKILIVTGSKDNS 308 (768)
Q Consensus 241 ~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~-----------~~~~~~-~~~~v~~l~~~~~~~~~~~l~~~~~dg~ 308 (768)
.|..++. ...+.++-..+|.|+.|-....-. ...+.. ....|..++ ......++....++.
T Consensus 17 ~v~~ia~---G~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va----~G~~ht~al~~~gg~ 89 (406)
T 4d9s_A 17 KVLIISA---GASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVT----CGADHTVAYSQSGME 89 (406)
T ss_dssp CEEEEEE---CSSEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEE----ECSSEEEEEETTTTE
T ss_pred ceEEEec---CCCeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEE----eCcceEEEEECCCCE
Confidence 4444443 445666677788999886543111 111111 122455543 222232333333458
Q ss_pred EEEEeCCCc------------eEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCcccc--ccceee
Q 004214 309 VRLWDSESR------------CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPM--NLKAKA 374 (768)
Q Consensus 309 i~iwd~~~~------------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~ 374 (768)
|+.|-.... .+..........|..++... .+.+.-..+|.|..|-............ ...+..
T Consensus 90 v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G~---~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~ 166 (406)
T 4d9s_A 90 VYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGD---SHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQK 166 (406)
T ss_dssp EEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECS---SEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEE
T ss_pred EEEEcCCCCcCCCCCCCCccccceEecccCCCCEEEEEECh---hheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceE
Confidence 999953321 11111111223577776643 3567778899999997654321111000 111111
Q ss_pred EeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC----------ce-EEEEec-cCCCeEEEEEccCCCEEEEeeC
Q 004214 375 VVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDL----------VS-VVTFRG-HKRGIWSVEFSPVDQVVITASG 442 (768)
Q Consensus 375 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~----------~~-~~~~~~-~~~~v~~v~~s~~~~~l~t~~~ 442 (768)
........|..++.. ....+.-+.+|.|+.|-.... .. ...+.. ....|..++.. ....+.-..
T Consensus 167 v~~~~~~~i~~va~G--~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G--~~ht~~l~~ 242 (406)
T 4d9s_A 167 IQAFEGIRIKMVAAG--AEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACG--WRHTISVSY 242 (406)
T ss_dssp CGGGTTCCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEEC--SSEEEEEET
T ss_pred ecccCCCcEEEEecC--CCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEEC--CCcEEEEcC
Confidence 111122356555544 345566678899999964321 01 111111 12345556554 334444567
Q ss_pred CCcEEEEeCCCCce-----------eEEeec-CCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCC------------eE
Q 004214 443 DKTIKIWSISDGSC-----------LKTFEG-HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTG------------EC 498 (768)
Q Consensus 443 d~~i~iwd~~~~~~-----------~~~~~~-~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~------------~~ 498 (768)
+|.|+.|-....-. ...+.. ....|..++ .-..+.+.-..||.|+.|-.... .+
T Consensus 243 ~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~--~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p 320 (406)
T 4d9s_A 243 SGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQIS--GGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSP 320 (406)
T ss_dssp TCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEE--ECSSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEE
T ss_pred CCCEEEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEE--ecCCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccC
Confidence 88999997543211 111111 122354443 33445556678899999964321 11
Q ss_pred EEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 004214 499 IATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDST 537 (768)
Q Consensus 499 ~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~ 537 (768)
..........|..++.. ....++...||.|..|=.+.
T Consensus 321 ~~v~~~~~~~v~~va~G--~~hs~alt~~G~v~~wG~n~ 357 (406)
T 4d9s_A 321 VQVRFPDDQKVVQVSCG--WRHTLAVTERNNVFAWGRGT 357 (406)
T ss_dssp EEECCGGGCCEEEEEEC--SSEEEEEETTSCEEEEECCT
T ss_pred EEEeccCCCcEEEEEeC--CCeEEEEeCCCCEEEecCCC
Confidence 11111122356666543 34556667899999997654
No 383
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=49.91 E-value=39 Score=36.13 Aligned_cols=60 Identities=13% Similarity=0.151 Sum_probs=42.1
Q ss_pred cEEEEEEeeCCCccEEEEEeC-----------CCcEEEEECCCCeeEEEecCcc-ceeEEEEEcCCCCEEEEE
Q 004214 32 VVSSILFHPDTDKSLLFSGSD-----------DATVRVWDLLAKKCVATLDKHF-SRVTSMAITSDGSTLISA 92 (768)
Q Consensus 32 ~V~~l~~spd~~~~~l~sg~~-----------dg~I~iWd~~~~~~~~~l~~h~-~~V~~l~fs~d~~~L~s~ 92 (768)
..-.|+|+|.|.. +|++=+. ...+.+.+..+++..+.+.++. +.++.++|+||++.|+..
T Consensus 477 ~PDNL~fd~~G~L-wI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRL-WILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCE-EEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCCCE-EEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 4577999999872 3333221 1235666777888877777654 589999999999988765
No 384
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=48.27 E-value=27 Score=37.98 Aligned_cols=37 Identities=14% Similarity=0.270 Sum_probs=30.7
Q ss_pred eeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeeeec
Q 004214 76 RVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPT 114 (768)
Q Consensus 76 ~V~~l~fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~ 114 (768)
.|.++.+ +..+|++.+.|+++|+|++.+++++.+...
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 4665555 477999999999999999999999887654
No 385
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=43.79 E-value=62 Score=34.17 Aligned_cols=71 Identities=14% Similarity=0.125 Sum_probs=51.9
Q ss_pred CCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCC----eeEEEec--CccceeE-EEEEcCCCCEEEEEeCCCeEEE
Q 004214 30 KGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK----KCVATLD--KHFSRVT-SMAITSDGSTLISAGRDKVVNL 100 (768)
Q Consensus 30 ~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~----~~~~~l~--~h~~~V~-~l~fs~d~~~L~s~~~dg~i~v 100 (768)
....++|+....+.+.+++.|..+|.|.-..+..+ ..+..+. ....+|. .|.+++++.+|+.++..+.++|
T Consensus 399 ~~~lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~~~~~pv~~~l~~~~~~~~Lyv~s~~~V~kv 476 (539)
T 3al9_A 399 RDRLTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRV 476 (539)
T ss_dssp SSCEEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTEEEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred ccceEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCccceeEEEEEeecCCCccccceEEccCCCeEEEEecccccee
Confidence 45688899888888889999999998765555322 2233332 2346785 9999999999999988775555
No 386
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=43.24 E-value=69 Score=34.21 Aligned_cols=59 Identities=12% Similarity=0.046 Sum_probs=42.5
Q ss_pred CeEEEEEccCCCEEEEEeCC------------CcEEEEeCCCCceEEEEecc-CCCeEEEEEccCCCEEEEe
Q 004214 382 DINSLAVAPNDSLVCTGSQD------------RTACVWRLPDLVSVVTFRGH-KRGIWSVEFSPVDQVVITA 440 (768)
Q Consensus 382 ~i~~~~~s~~~~~l~~~~~d------------g~i~i~d~~~~~~~~~~~~~-~~~v~~v~~s~~~~~l~t~ 440 (768)
..--|+|+|.|++++.-..+ ..+.+.+..+++....+.++ ...++.++|+||++.|++.
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 34568999999976664432 23566677777776666654 4579999999999888775
No 387
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=42.77 E-value=89 Score=33.01 Aligned_cols=61 Identities=11% Similarity=0.001 Sum_probs=44.2
Q ss_pred CcEEEEEEEeCCCEEEEEeC------------CCcEEEEECCCCeEEEEeccC-CCcEEEEEEcCCCCEEEEEe
Q 004214 465 SSVLRASFLTRGAQIVSCGA------------DGLVKLWTVRTGECIATYDKH-EDKIWALAVGKKTEMFATGG 525 (768)
Q Consensus 465 ~~v~~~~~s~~~~~l~s~~~------------dg~i~iwd~~~~~~~~~~~~~-~~~v~~l~~s~~~~~l~s~~ 525 (768)
.....|.|.++|.+.++... ...|..++..+++....+... ...++.++|+||++.|.+.-
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 45677999999987774332 125777787788876666543 35799999999999887653
No 388
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=42.26 E-value=87 Score=32.59 Aligned_cols=69 Identities=14% Similarity=0.205 Sum_probs=48.9
Q ss_pred cEEEEEEeeC----CCccEEEEEeCCCcEEEEECC-CCe-------eEEEecC--ccceeEEEEEcCCCCEEEEEeCCCe
Q 004214 32 VVSSILFHPD----TDKSLLFSGSDDATVRVWDLL-AKK-------CVATLDK--HFSRVTSMAITSDGSTLISAGRDKV 97 (768)
Q Consensus 32 ~V~~l~~spd----~~~~~l~sg~~dg~I~iWd~~-~~~-------~~~~l~~--h~~~V~~l~fs~d~~~L~s~~~dg~ 97 (768)
..++|+...- +.+.+++.|..+|.|.=.-+. .+. .+..+.- ...+|..|.|+++..+|+.++.++.
T Consensus 405 ~lT~IaVd~v~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V 484 (495)
T 1q47_A 405 QFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGV 484 (495)
T ss_dssp CEEEEEEEEEECSSCEEEEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCE
T ss_pred ceEEEEEEEEccCCCcEEEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeE
Confidence 5788877643 778889999999987544332 211 2233332 3578999999999999999998886
Q ss_pred EEE
Q 004214 98 VNL 100 (768)
Q Consensus 98 i~v 100 (768)
++|
T Consensus 485 ~~v 487 (495)
T 1q47_A 485 AQL 487 (495)
T ss_dssp EEE
T ss_pred EEE
Confidence 665
No 389
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=41.03 E-value=3.1e+02 Score=28.08 Aligned_cols=238 Identities=11% Similarity=0.004 Sum_probs=109.9
Q ss_pred ceeEEEEecCCCCEEEEEeCCCcEEEEECCCce---eeeeee---------CCccceEEEeeeeecC---CCEEEEEEeC
Q 004214 241 EILDLKFLGEEEQYLAVATNIEQVQVYDLSSMS---CSYVLA---------GHSEIVLCLDTCALSS---GKILIVTGSK 305 (768)
Q Consensus 241 ~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~---~~~~~~---------~~~~~v~~l~~~~~~~---~~~~l~~~~~ 305 (768)
....|+|.++....++++...|.|++++..... .+..+. ........++ +.++ ++.+.++-+.
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia--~~P~f~~n~~lYv~yt~ 92 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLA--FHPNYKKNGKLYVSYTT 92 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEE--ECTTHHHHCEEEEEEEE
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeE--eCCCCcCCCEEEEEEeC
Confidence 457788886554456677778999999754321 111111 1134556665 5443 2333333322
Q ss_pred --C----------CeEEEEeCCC----------ceEEEeee--cccCcEEEEEEecCCCcEEEEEeCC------------
Q 004214 306 --D----------NSVRLWDSES----------RCCVGVGT--GHMGAVGAVAFSKKLQNFLVSGSSD------------ 349 (768)
Q Consensus 306 --d----------g~i~iwd~~~----------~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~d------------ 349 (768)
+ ..|.-|.+.. .+.+..+. .....-..|+|.|+|. +.++.+..
T Consensus 93 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~-LYv~~Gd~~~~~~~~~~~q~ 171 (463)
T 2wg3_C 93 NQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGF-LYIILGDGMITLDDMEEMDG 171 (463)
T ss_dssp CCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSC-EEEEECCTTCCHHHHHHCTT
T ss_pred CCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCc-EEEEeCCCCCCCCccccccC
Confidence 1 1344455431 12222222 2223467899999986 44444332
Q ss_pred -----CeEEEEeCCCC------CCCCcccccc----ceeeEeeccCCCeEEEEEccC-----CC-EEEEEeCCC----cE
Q 004214 350 -----HTIKVWSFDGL------SDDAEQPMNL----KAKAVVAAHGKDINSLAVAPN-----DS-LVCTGSQDR----TA 404 (768)
Q Consensus 350 -----g~i~iwd~~~~------~~~~~~~~~~----~~~~~~~~~~~~i~~~~~s~~-----~~-~l~~~~~dg----~i 404 (768)
|.|.-.+.+.. ......++.. .......+|.. ...++|+|. |. .+..+...| .-
T Consensus 172 ~~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RN-p~gla~dp~tg~~~G~l~~~~~D~~G~~~~~~ 250 (463)
T 2wg3_C 172 LSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHD-PGRCAVDRHPTDININLTILCSDSNGKNRSSA 250 (463)
T ss_dssp CCSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSS-CCBEEEESSCSSTTCSEEEEEECC------CE
T ss_pred cCCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCC-cceEEECCCCCCcccceEEEecccCCCCCCCC
Confidence 22333333321 0000111111 12233344444 457899996 34 344333212 12
Q ss_pred EEEeCCCC------ceEEEEeccC-CCeEEEEEccC-------CCEEEEeeCCCcEEEEeCCCCce---eEEe-ec----
Q 004214 405 CVWRLPDL------VSVVTFRGHK-RGIWSVEFSPV-------DQVVITASGDKTIKIWSISDGSC---LKTF-EG---- 462 (768)
Q Consensus 405 ~i~d~~~~------~~~~~~~~~~-~~v~~v~~s~~-------~~~l~t~~~d~~i~iwd~~~~~~---~~~~-~~---- 462 (768)
.|..+..+ .++..+..|. ..+..+.|-.. +.+|+. ...+.|....+..... ...+ .+
T Consensus 251 ei~~i~~G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~f~~-~~~g~i~~~~~~~~~~~~~~~~~~~g~~~~ 329 (463)
T 2wg3_C 251 RILQIIKGKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGSYVFG-DRNGNFLTLQQSPVTKQWQEKPLCLGTSGS 329 (463)
T ss_dssp EEEEEC----CCSCCCCEECCC----CEEEEEECCCSSCTTTTTCEEEE-ETTSCEEEEEC-----CCEEEEECEEETTS
T ss_pred eEeeeccCCCCCCCCCeEEeeCCCCccccceEEEeCCCChhhcceEEEe-cCCCcEEEEEeCCCCceeeEEEeecCCccc
Confidence 33333222 2333333221 46777777532 345544 3447666666543321 1122 11
Q ss_pred ----CCCcEEEEEEEeCCCEEEEEe
Q 004214 463 ----HTSSVLRASFLTRGAQIVSCG 483 (768)
Q Consensus 463 ----~~~~v~~~~~s~~~~~l~s~~ 483 (768)
....+..+.+.|||.++++..
T Consensus 330 ~~~~~~~r~~~v~~~pdG~Lyv~~~ 354 (463)
T 2wg3_C 330 CRGYFSGHILGFGEDELGEVYILSS 354 (463)
T ss_dssp SCSCCCSEEEEEEECTTCCEEEEEE
T ss_pred ccccccCcceEEEECCCCCEEEEec
Confidence 235789999999998777765
No 390
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=37.11 E-value=41 Score=36.64 Aligned_cols=37 Identities=16% Similarity=0.275 Sum_probs=29.7
Q ss_pred cEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEecc
Q 004214 466 SVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDK 504 (768)
Q Consensus 466 ~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 504 (768)
.|.++ ..+..++++-+.|.++|+|++++++++.+..-
T Consensus 223 ~Is~~--~~~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCK--LFHERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEE--EETTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEe--ccCCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 34433 34578999999999999999999998887653
No 391
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=34.67 E-value=3.7e+02 Score=26.99 Aligned_cols=277 Identities=10% Similarity=0.049 Sum_probs=138.2
Q ss_pred CCCceEEEEecCeEEEEeeccCccc-----ceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCcee-
Q 004214 201 SNQGLLCVTADQQLLLYTTVEVPEK-----KMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSC- 274 (768)
Q Consensus 201 ~~~~l~~~~~dg~i~~~~~~~~~~~-----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~- 274 (768)
.....++.+.+|.++.|-....... .........+. ....|..++. ...+.++-+.+|.|+.|-....-.
T Consensus 32 g~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~-~l~~v~~va~---G~~h~~~l~~~G~v~~wG~n~~GqL 107 (423)
T 3mvd_K 32 HLELPKRRTVLGNVLVCGNGDVGQLGLGEDILERKRLSPVA-GIPDAVDISA---GGMHNLVLTKSGDIYSFGCNDEGAL 107 (423)
T ss_dssp CCCCCCCCCCCEEEEEEEECTTSTTCSCSSCCEEEEEEECC-SCSSEEEEEE---CSSEEEEEETTSCEEEEECCSSSTT
T ss_pred CCccceeecCCCcEEEEeCCCCCCCCCCCCCccCcCCeEcc-CCCCceEEee---CCCeEEEEeCCCeEEEeECCCCcCC
Confidence 3444466677888888865442210 01111112222 2234555554 456777788889999997543111
Q ss_pred ------------eeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeC--CC-ceE---------EEeeecccCcE
Q 004214 275 ------------SYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDS--ES-RCC---------VGVGTGHMGAV 330 (768)
Q Consensus 275 ------------~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~--~~-~~~---------~~~~~~~~~~v 330 (768)
...+. ....|..++ ..... .+.-..||.|+.|-. .. +++ ..........|
T Consensus 108 G~~~~~~~~~~~P~~v~-~~~~i~~va----~G~~h-s~al~~~G~v~~wG~~~n~~GqlG~~~~~~~~~p~~~~~~~~i 181 (423)
T 3mvd_K 108 GRDTSEDGSESKPDLID-LPGKALCIS----AGDSH-SACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRTPIDLMEGTVC 181 (423)
T ss_dssp CSCCCSTTSSSSCEECC-CSSCEEEEE----ECSSE-EEEEETTSCEEEEECEECSSSEEESBTTBCEEEEEESSTTCCE
T ss_pred CCCCcCCccccCCeEEc-CCCCEEEEE----cCcCe-EEEEeCCCeEEEEeCCCCCCCCcCcCCCCCCceeeEecCCCcE
Confidence 11111 123454543 12222 555678999999975 22 221 11111223456
Q ss_pred EEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCc-------------cccccceeeEeeccCCCeEEEEEccCCCEEEE
Q 004214 331 GAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAE-------------QPMNLKAKAVVAAHGKDINSLAVAPNDSLVCT 397 (768)
Q Consensus 331 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-------------~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 397 (768)
..++.... +.++-..+|.|..|-......... ......+..........|..++.... ..++.
T Consensus 182 ~~va~G~~---hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~v~~i~~g~~-~~~~~ 257 (423)
T 3mvd_K 182 CSIASGAD---HLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWATNY-CTFMR 257 (423)
T ss_dssp EEEEECSS---EEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCTTCCCEEEEEEETT-EEEEE
T ss_pred EEEecCCC---eEEEEecCCeEEEeeCCcCCccCCCcccccccccccccccccCCeEEeecCCccEEEEEECCc-EEEEE
Confidence 66665443 567778899999997543211100 00011222222223345666655422 23333
Q ss_pred EeCCCcEEEEeCCCC-----------ceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCC---------c--
Q 004214 398 GSQDRTACVWRLPDL-----------VSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG---------S-- 455 (768)
Q Consensus 398 ~~~dg~i~i~d~~~~-----------~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~---------~-- 455 (768)
-..+|.|+.|-.... ............|..|+.. ....+.-..||.|+.|-.... .
T Consensus 258 ~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~v~~ia~G--~~ht~alt~~G~v~~wG~n~~GqLG~g~~~~~~ 335 (423)
T 3mvd_K 258 ESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAGG--QHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVV 335 (423)
T ss_dssp ETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEECCCSEEEEEEC--SSEEEEEETTCCEEEEECCGGGTTCSSSCCSCE
T ss_pred ECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcCCCCeEEEEcc--cCeEEEEeCCCcEEEEECCCCCCCCCCCccccc
Confidence 357888888854321 1111111113456666554 344445567899999975321 0
Q ss_pred -eeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCC
Q 004214 456 -CLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRT 495 (768)
Q Consensus 456 -~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 495 (768)
....+......|..++.. ..+-+.-..||.|+.|-...
T Consensus 336 ~~p~~v~~l~~~v~~ia~G--~~hs~alt~~G~v~~wG~n~ 374 (423)
T 3mvd_K 336 EKPTIVKKLTEKIVSVGCG--EVCSYAVTIDGKLYSWGSGV 374 (423)
T ss_dssp EEEEECTTCCSCEEEEEEE--TTEEEEEETTSCEEEEECCT
T ss_pred cCceEeccCCCCEEEEEcC--CCeEEEEcCCCCEEEECCCC
Confidence 112222222356655544 33445557899999997543
No 392
>2vxg_A LD41624, GE-1, CG6181-PA, isoform A; decapping, EDC4, hedls, mRNA decay, P-BODY, gene regulation; 1.9A {Drosophila melanogaster}
Probab=33.35 E-value=1.5e+02 Score=24.46 Aligned_cols=104 Identities=13% Similarity=0.081 Sum_probs=58.6
Q ss_pred HHHHhhcccchHHHHHHHhhcCCchhHHHHHHHHHhchhhHHHHHHHHhhcCHHHHHHHHHHHHHHhcCCCchHHHHHHH
Q 004214 557 ELENAVLDADYTKAIQVAFELRRPHKLFELFASVCRKREAELQIEKALHALGKEEIRQLLEYVREWNTKPKLCHVAQFVL 636 (768)
Q Consensus 557 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~~~~~~~~l 636 (768)
++..++..++|.+|+..|+...+-. ++..++...+....+...=..|+..-+..|.+-+..=+ ....+.=..||
T Consensus 6 ~I~~Ll~~g~~eeAf~~aL~ssd~~----lv~~lc~~~dp~~~~~~~~~~Lsq~vLLSLiqqls~dL--~~~~~~Kl~WL 79 (139)
T 2vxg_A 6 SIKQLLMAGQINKAFHQALLANDLG----LVEFTLRHTDSNQAFAPEGCRLEQKVLLSLIQQISADM--TNHNELKQRYL 79 (139)
T ss_dssp HHHHHHHHTCHHHHHHHHHHTTCHH----HHHHHHHHSCHHHHTC----CCCHHHHHHHHHHHHHCC--TTCCHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHhCcHH----HHHHHHHcCCHHHhcCCCCCCccHHHHHHHHHHHHHHh--ccCcHHHHHHH
Confidence 4778888899999999999877653 33444433322211111115667766777777775433 44556778888
Q ss_pred HHHhccCCcchhhcccChHhHHHhhccchH
Q 004214 637 FQLFNIHPPTEIIEIKGISDVLEGLIPYTQ 666 (768)
Q Consensus 637 ~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~ 666 (768)
...+....+..-.-.+.+.++++.|+..++
T Consensus 80 e~vl~aid~~dp~i~~~~p~Il~~l~~~L~ 109 (139)
T 2vxg_A 80 NEALLAINMADPITREHAPKVLTELYRNCQ 109 (139)
T ss_dssp HHHHHHCCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCchHHHHHHHHHHHHHHHHH
Confidence 887776654332222234444444444333
No 393
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=33.29 E-value=5.4e+02 Score=28.56 Aligned_cols=155 Identities=9% Similarity=0.053 Sum_probs=74.9
Q ss_pred CCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeC-------CccceEEEeeeeecCCCEEEEEEeCCCe---
Q 004214 239 NEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAG-------HSEIVLCLDTCALSSGKILIVTGSKDNS--- 308 (768)
Q Consensus 239 ~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~-------~~~~v~~l~~~~~~~~~~~l~~~~~dg~--- 308 (768)
...|.++++.+.+...+.+++..+.|...+=....-. .+.. ....+.+++ +.+.+...++.+..+..
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~DgG~tW~-~~~~~~~~~~~~~~~i~~ia--~dp~~~~~i~~~~g~~~~~~ 90 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWDAGTSKWI-PLNDFIEAQDMNIMGTESIA--LDPNNPDRLYLAQGRYVGDE 90 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEE-ESCTTCCGGGGGGCSEEEEE--EETTEEEEEEEEECSCTTSS
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEecCCCCCee-ECccCCCcccccCCceeEEE--ECCCCCCEEEEEeCccCCCc
Confidence 4588999999888888888888777766553222111 1111 123577776 55543333444432211
Q ss_pred -EEEEe-CCCceEEEeeecc-------c--CcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEee
Q 004214 309 -VRLWD-SESRCCVGVGTGH-------M--GAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVA 377 (768)
Q Consensus 309 -i~iwd-~~~~~~~~~~~~~-------~--~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 377 (768)
-.||. ...++.-...... . ..+..+++.|.....++.+...+. +|.-......-...... . ...
T Consensus 91 ~~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~g--l~~S~DgG~TW~~~~~~-~--~~~ 165 (789)
T 1sqj_A 91 WAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEG--IWKSSDRAKTWTNVTSI-P--DAF 165 (789)
T ss_dssp CCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSC--EEEESSTTSSCEEETTS-C--CCC
T ss_pred ccEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCC--EEEECCCCcccCCCccC-c--ccc
Confidence 23332 3333332222110 1 135568888765556666664443 33332221111100000 0 000
Q ss_pred ccCCCeEEEEEcc-CCCEEEEEeCC
Q 004214 378 AHGKDINSLAVAP-NDSLVCTGSQD 401 (768)
Q Consensus 378 ~~~~~i~~~~~s~-~~~~l~~~~~d 401 (768)
.....+..+.++| ++..++++..+
T Consensus 166 ~~~~~~~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 166 TNGIGYTSVIFDPERNGTIYASATA 190 (789)
T ss_dssp STTTCEEEEEECTTSTTCEEEEESS
T ss_pred CCCCCeEEEEECCCCCCEEEEEEcC
Confidence 1124578889988 44566666654
No 394
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=32.86 E-value=3.8e+02 Score=26.60 Aligned_cols=183 Identities=11% Similarity=0.111 Sum_probs=94.8
Q ss_pred eEEEEeCCCc--eEEEeeecc------cCcEEEEEEe---cC---CCcEE-EEEeCCCeEEEEeCCCCCCCCccccccce
Q 004214 308 SVRLWDSESR--CCVGVGTGH------MGAVGAVAFS---KK---LQNFL-VSGSSDHTIKVWSFDGLSDDAEQPMNLKA 372 (768)
Q Consensus 308 ~i~iwd~~~~--~~~~~~~~~------~~~v~~~~~~---~~---~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 372 (768)
.|.+||+.++ +.++.+.-. ...+..+.+. |. +..++ ++=+..+.|.++|+..+. .
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~----------s 193 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQD----------S 193 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTE----------E
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCc----------E
Confidence 5667888887 777665432 3457788877 22 12233 333457789999988542 2
Q ss_pred eeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccC----CCEEEEeeCCCcEEE
Q 004214 373 KAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPV----DQVVITASGDKTIKI 448 (768)
Q Consensus 373 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~----~~~l~t~~~d~~i~i 448 (768)
.... |.. |.|+.....+ -+|.-.- -...+..|+++|+ ++.|.-....+ -++
T Consensus 194 wRv~--~~~------~~pd~~~~~~--i~G~~~~--------------~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~l 248 (381)
T 3q6k_A 194 WNVT--HPT------FKAERPTKFD--YGGKEYE--------------FKAGIFGITLGDRDSEGNRPAYYLAGSA-IKV 248 (381)
T ss_dssp EEEE--CGG------GSCCSCEEEE--ETTEEEE--------------ECCCEEEEEECCCCTTSCCEEEEEESSC-SEE
T ss_pred EEEc--cCC------CccccCcceE--ECCEEeE--------------eccCceEEEecCCcCCCCeEEEEEECCC-CcE
Confidence 2222 211 2343111111 1121111 1246888888887 66666555433 234
Q ss_pred EeCC-----CCc---eeEEee--cCCCcEEEEEEE-eCCCEEEEEeCCCcEEEEECCC-C---eEEEEecc--CCCcEEE
Q 004214 449 WSIS-----DGS---CLKTFE--GHTSSVLRASFL-TRGAQIVSCGADGLVKLWTVRT-G---ECIATYDK--HEDKIWA 511 (768)
Q Consensus 449 wd~~-----~~~---~~~~~~--~~~~~v~~~~~s-~~~~~l~s~~~dg~i~iwd~~~-~---~~~~~~~~--~~~~v~~ 511 (768)
|.+. +.. .++.+- +....-..+++. .+|..+++--....|..|+..+ . +....+.. .-.-+..
T Consensus 249 y~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~ 328 (381)
T 3q6k_A 249 YSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTD 328 (381)
T ss_dssp EEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEE
T ss_pred EEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCe
Confidence 4332 221 122221 111233445665 5677777777788899999875 1 12222221 2223667
Q ss_pred EEEcCCCCEEEEEe
Q 004214 512 LAVGKKTEMFATGG 525 (768)
Q Consensus 512 l~~s~~~~~l~s~~ 525 (768)
+.+.++|.+.+...
T Consensus 329 ~~i~~~g~Lwv~sn 342 (381)
T 3q6k_A 329 ISVDSKGGLWFMSN 342 (381)
T ss_dssp EEECTTSCEEEEEC
T ss_pred EEECCCCeEEEEEC
Confidence 77777777666554
No 395
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=25.61 E-value=5.1e+02 Score=25.79 Aligned_cols=237 Identities=8% Similarity=0.031 Sum_probs=118.7
Q ss_pred EEEccCCCceEEEEecCeEEEEeeccCccc--------ceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEE
Q 004214 196 ATVLPSNQGLLCVTADQQLLLYTTVEVPEK--------KMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVY 267 (768)
Q Consensus 196 ~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~--------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~ 267 (768)
..+.......++.+.+|.++.|-....... ....+.. + .....|..++. ...+.++-+.+|.|+.|
T Consensus 62 ~~va~G~~hs~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~--v-~l~~~i~~va~---G~~hs~alt~~G~v~~w 135 (413)
T 1a12_A 62 VQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGK--V-ELQEKVVQVSA---GDSHTAALTDDGRVFLW 135 (413)
T ss_dssp EEEEECSSEEEEEETTSCEEEEECCTTSTTCSCCCSTTGGGSCEE--C-CCCSCEEEEEE---CSSEEEEEETTSCEEEE
T ss_pred EEEEeCCCeEEEEcCCCCEEEEECCCCCCCCCCCCCCccccCCeE--e-cCCCcEEEEec---CCCeEEEEcCCCcEEEe
Confidence 344456667788899999999975532110 0000111 1 12335666654 44566777888999999
Q ss_pred EC--CC-cee-----------eeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEE-------------
Q 004214 268 DL--SS-MSC-----------SYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCV------------- 320 (768)
Q Consensus 268 d~--~~-~~~-----------~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~------------- 320 (768)
-. .. ++. ...+ .....|..++ . +....+.-..+|.|+.|-....-.+
T Consensus 136 G~~~n~~GqlG~~~~~~~~~~P~~v-~~~~~i~~ia----~-G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~ 209 (413)
T 1a12_A 136 GSFRDNNGVIGLLEPMKKSMVPVQV-QLDVPVVKVA----S-GNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGR 209 (413)
T ss_dssp ECEEETTEEEESSBBTBCEEEEEEE-CCSSCEEEEE----E-CSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGG
T ss_pred eCCcCCCCccCcCCccccccCCEEe-cCCCCEEEEE----e-cCceEEEEcCCCCEEEeeCCCCCccCCCcccccccccc
Confidence 75 21 111 0111 1223444443 1 2222555668899999964321000
Q ss_pred ---------Eeeec------ccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCcccc--ccceeeEeeccC--C
Q 004214 321 ---------GVGTG------HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPM--NLKAKAVVAAHG--K 381 (768)
Q Consensus 321 ---------~~~~~------~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~--~ 381 (768)
..... ....|..++.... +.++-..+|.|..|-............ ...+........ .
T Consensus 210 ~~~~~~~~P~~v~~~~~g~~~~~~i~~ia~G~~---hs~alt~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~ 286 (413)
T 1a12_A 210 QGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAY---FTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTK 286 (413)
T ss_dssp GGHHHHHSCEECCCBCSSCCSBCCEEEEEEETT---EEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTC
T ss_pred ccccccccCceEeeccccccCCccEEEEEeCCC---EEEEEeCCCCEEEEeCCCCcCCCCCCCCcccccEEchhccCCCc
Confidence 00000 2245666766544 456667899999997654321111000 011111111111 2
Q ss_pred CeEEEEEccCCCEEEEEeCCCcEEEEeCCCC---------c---eEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEE
Q 004214 382 DINSLAVAPNDSLVCTGSQDRTACVWRLPDL---------V---SVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIW 449 (768)
Q Consensus 382 ~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~---------~---~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iw 449 (768)
.|..++.. ....++-..||.|+.|-.... . ....+. .-..|..|+... ...++-..||.|+.|
T Consensus 287 ~v~~ia~G--~~hs~al~~~G~v~~wG~n~~GqLG~g~~~~~~~~P~~v~-~l~~v~~v~~G~--~hs~alt~~G~v~~w 361 (413)
T 1a12_A 287 SWVGFSGG--QHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLIS-RLPAVSSVACGA--SVGYAVTKDGRVFAW 361 (413)
T ss_dssp CEEEEEEC--SSEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEEECC-SSSSEEEEEECS--SEEEEEETTSCEEEE
T ss_pred eEEEEecc--cceEEEEeCCCCEEEeeCCCCCccCCCCCCccccCCEEec-ccCceeEEEECc--ceEEEEeCCCCEEEe
Confidence 35555543 344555567899999964321 0 111111 122566665543 344444577888888
Q ss_pred eCC
Q 004214 450 SIS 452 (768)
Q Consensus 450 d~~ 452 (768)
-..
T Consensus 362 G~n 364 (413)
T 1a12_A 362 GMG 364 (413)
T ss_dssp ECC
T ss_pred cCC
Confidence 754
No 396
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=24.09 E-value=2.6e+02 Score=21.82 Aligned_cols=25 Identities=8% Similarity=-0.061 Sum_probs=14.8
Q ss_pred EEEEEeCCCEEEEEeCCCcEEEEECCC
Q 004214 469 RASFLTRGAQIVSCGADGLVKLWTVRT 495 (768)
Q Consensus 469 ~~~~s~~~~~l~s~~~dg~i~iwd~~~ 495 (768)
.+.+..+|++++... ++.+ +|...+
T Consensus 60 ~l~l~~dGNLVl~d~-~~~~-iW~S~t 84 (113)
T 3mez_B 60 FMRLGHSGELDITDD-RLNT-VFVSNT 84 (113)
T ss_dssp EEEECTTSCEEEECT-TSCE-EEECSC
T ss_pred EEEEeCCCcEEEECC-CCCE-EEECCC
Confidence 466777787766533 3443 676544
No 397
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=23.97 E-value=7.3e+02 Score=27.07 Aligned_cols=95 Identities=9% Similarity=0.077 Sum_probs=51.1
Q ss_pred CCCcEEEEECCCce-------eeee-e-eCCccceEEEeeeeecCCCEEEEEEeCCCe--EEEEeCCCceE-EEe-eecc
Q 004214 260 NIEQVQVYDLSSMS-------CSYV-L-AGHSEIVLCLDTCALSSGKILIVTGSKDNS--VRLWDSESRCC-VGV-GTGH 326 (768)
Q Consensus 260 ~~~~i~i~d~~~~~-------~~~~-~-~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~--i~iwd~~~~~~-~~~-~~~~ 326 (768)
..+.|...++.++. .... + ......+..+. +. .+ .++++...++. +.++++.++.. ... +...
T Consensus 318 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~-~~-~l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp 393 (711)
T 4hvt_A 318 KAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFIS--TT-KD-RVFLATYDNVVAKVVTFTLENEQWTKPVVLKLP 393 (711)
T ss_dssp CTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEE--EC-SS-CEEEEEEETTEEEEEEECEETTEECCCEEECCC
T ss_pred CCCeEEEEECCcccccccccccceEEECCCCCCeEEEEE--EE-CC-EEEEEEEECCEEEEEEEECCCCceEEEeccCCC
Confidence 45778888887642 1222 2 22333455553 33 33 45777777774 66677666541 222 2211
Q ss_pred -cCcEEEEEEecCCCcEEEEEeC---CCeEEEEeCC
Q 004214 327 -MGAVGAVAFSKKLQNFLVSGSS---DHTIKVWSFD 358 (768)
Q Consensus 327 -~~~v~~~~~~~~~~~~l~s~~~---dg~i~iwd~~ 358 (768)
.+.+......+++..++++.+. -+.+..+|+.
T Consensus 394 ~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 394 YQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp STTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred CCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 3456666677777666666543 2455555543
No 398
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=23.17 E-value=1.7e+02 Score=31.67 Aligned_cols=70 Identities=17% Similarity=0.275 Sum_probs=46.9
Q ss_pred CcEEEEEE----eeCCCccEEEEEeCCCcEE-EEECCCCe-------eEEEec--CccceeEEEEEcCCCCEEEEEeCCC
Q 004214 31 GVVSSILF----HPDTDKSLLFSGSDDATVR-VWDLLAKK-------CVATLD--KHFSRVTSMAITSDGSTLISAGRDK 96 (768)
Q Consensus 31 ~~V~~l~~----spd~~~~~l~sg~~dg~I~-iWd~~~~~-------~~~~l~--~h~~~V~~l~fs~d~~~L~s~~~dg 96 (768)
...+.|+. .++|++.+++.|..+|.|. +.....+. .+..+. ....+|..|.++++..+|+.++.++
T Consensus 412 ~~lT~IaVd~v~~~~g~ytVlFLGT~~G~I~Kvv~~~~~~~~~~~~~~leEi~v~~~~~pI~~L~ld~~~~~LYV~t~~~ 491 (667)
T 4gz8_A 412 YQFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAG 491 (667)
T ss_dssp CCEEEEEEEEEECSSCEEEEEEEEETTSEEEEEEEEC------CEEEEEEEEECSSSCCCCCEEEEETTTTEEEEEBSSC
T ss_pred cceeEEEEEEEecCCCcEEEEEEECCCCeEEEEEEcCCCCccccceEEEEEEeecCCCceeeeEEEcCCCCEEEEEECCE
Confidence 34566666 3466677899999999874 33222211 222222 3566899999999999999999888
Q ss_pred eEEE
Q 004214 97 VVNL 100 (768)
Q Consensus 97 ~i~v 100 (768)
.++|
T Consensus 492 V~kV 495 (667)
T 4gz8_A 492 VAQL 495 (667)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6665
No 399
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=22.13 E-value=2.8e+02 Score=21.58 Aligned_cols=25 Identities=8% Similarity=0.111 Sum_probs=14.3
Q ss_pred EEEEEccCCCEEEEeeCCCcEEEEeCC
Q 004214 426 WSVEFSPVDQVVITASGDKTIKIWSIS 452 (768)
Q Consensus 426 ~~v~~s~~~~~l~t~~~d~~i~iwd~~ 452 (768)
..+.+..+|++++... ++.+ +|...
T Consensus 59 ~~l~l~~dGNLVl~d~-~~~~-iW~S~ 83 (113)
T 3mez_B 59 CFMRLGHSGELDITDD-RLNT-VFVSN 83 (113)
T ss_dssp CEEEECTTSCEEEECT-TSCE-EEECS
T ss_pred EEEEEeCCCcEEEECC-CCCE-EEECC
Confidence 3466777777666543 3433 67654
No 400
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Probab=21.27 E-value=4.2e+02 Score=28.72 Aligned_cols=69 Identities=14% Similarity=0.214 Sum_probs=46.0
Q ss_pred cEEEEEEe----eCC-CccEEEEEeCCCcEEEE-ECCCCee-EEEec--CccceeEEEEEcCCC--CEEEEEeCCCeEEE
Q 004214 32 VVSSILFH----PDT-DKSLLFSGSDDATVRVW-DLLAKKC-VATLD--KHFSRVTSMAITSDG--STLISAGRDKVVNL 100 (768)
Q Consensus 32 ~V~~l~~s----pd~-~~~~l~sg~~dg~I~iW-d~~~~~~-~~~l~--~h~~~V~~l~fs~d~--~~L~s~~~dg~i~v 100 (768)
..++|+.. +++ .+.+++.|..+|.|.=. ....+.. +..+. ....+|..|.++++. .+|+.++..+.++|
T Consensus 398 ~~T~iaVd~v~~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~ee~~~~~~~~pI~~l~l~~~~~~~~Lyv~s~~~V~~v 477 (663)
T 1olz_A 398 NYTQIVVDRTQALDGTVYDVMFVSTDRGALHKAISLEHAVHIIEETQLFQDFEPVQTLLLSSKKGNRFVYAGSNSGVVQA 477 (663)
T ss_dssp CEEEEEEEEEECTTSCEEEEEEEEETTSEEEEEEECSSSEEEEEEEECCTTCCCCCEEEECCSSSSCEEEEECSSCEEEE
T ss_pred ceEEEEEEEEeccCCCceEEEEEEcCCcEEEEEEecCCCceEEEEecccCCCCcceeeEeccCCCccEEEEEEcCeEEEE
Confidence 46777774 333 36679999999987433 4333322 22222 245689999999988 89999888776665
Done!