BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 004216
         (767 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4GTX|A Chain A, Crystal Structure Of Mouse Enpp1 In Complex With Tmp
 pdb|4GTX|B Chain B, Crystal Structure Of Mouse Enpp1 In Complex With Tmp
 pdb|4GTY|A Chain A, Crystal Structure Of Mouse Enpp1 In Complex With Gmp
 pdb|4GTY|B Chain B, Crystal Structure Of Mouse Enpp1 In Complex With Gmp
 pdb|4GTZ|A Chain A, Crystal Structure Of Mouse Enpp1 In Complex With Cmp
 pdb|4GTZ|B Chain B, Crystal Structure Of Mouse Enpp1 In Complex With Cmp
          Length = 823

 Score = 35.0 bits (79), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 1/62 (1%)

Query: 15  LHLLGCDSNGHAHRPFSSIYLNNVKVVDHIAKRMYFLLEDYFKDNRTAYIFTADHGMSDK 74
           L+L   DS+GH+H P SS  +  ++ VD +   +   L+D   D     I  +DHGM ++
Sbjct: 270 LYLEEPDSSGHSHGPVSSEVIKALQKVDRLVGMLMDGLKDLGLDKCLNLILISDHGM-EQ 328

Query: 75  GS 76
           GS
Sbjct: 329 GS 330


>pdb|4B56|A Chain A, Structure Of Ectonucleotide
           Pyrophosphatase-Phosphodiesterase-1 (Npp1)
 pdb|4B56|B Chain B, Structure Of Ectonucleotide
           Pyrophosphatase-Phosphodiesterase-1 (Npp1)
          Length = 820

 Score = 35.0 bits (79), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 1/62 (1%)

Query: 15  LHLLGCDSNGHAHRPFSSIYLNNVKVVDHIAKRMYFLLEDYFKDNRTAYIFTADHGMSDK 74
           L+L   DS+GH+H P SS  +  ++ VD +   +   L+D   D     I  +DHGM ++
Sbjct: 266 LYLEEPDSSGHSHGPVSSEVIKALQKVDRLVGMLMDGLKDLGLDKCLNLILISDHGM-EQ 324

Query: 75  GS 76
           GS
Sbjct: 325 GS 326


>pdb|4GTW|A Chain A, Crystal Structure Of Mouse Enpp1 In Complex With Amp
 pdb|4GTW|B Chain B, Crystal Structure Of Mouse Enpp1 In Complex With Amp
          Length = 823

 Score = 33.1 bits (74), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%)

Query: 15  LHLLGCDSNGHAHRPFSSIYLNNVKVVDHIAKRMYFLLEDYFKDNRTAYIFTADHGMSDK 74
           L+L   DS+GH+H P SS  +  ++ VD +   +   L+D   D     I  +DHG  ++
Sbjct: 270 LYLEEPDSSGHSHGPVSSEVIKALQKVDRLVGXLXDGLKDLGLDKCLNLILISDHGX-EQ 328

Query: 75  GS 76
           GS
Sbjct: 329 GS 330


>pdb|2IFY|A Chain A, Structure Of Bacillus Anthracis Cofactor-Independent
           Phosphoglucerate Mutase
          Length = 508

 Score = 32.0 bits (71), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 55/151 (36%), Gaps = 40/151 (26%)

Query: 12  VIFLHLLGCDSNGHAHRPFSSIYLNNVKVVDHIAKRMYFLLEDYFKDNRTAYIFTADHGM 71
           VI L+   CD  GH     S +    +K V+   + +  ++E     +  A I TADHG 
Sbjct: 392 VIILNFANCDMVGH-----SGMMEPTIKAVEATDECLGKVVEAILAKDGVALI-TADHGN 445

Query: 72  SDKGSHGDGHPTNTDTPLVVWGAGVQHPKPISETNHSDCGFLFIDEHAHDMPTPSEWGLN 131
           +D+    +G P    T                 TN                P P     N
Sbjct: 446 ADEELTSEGEPMTAHT-----------------TN----------------PVPFIVTKN 472

Query: 132 GIE-RVDVNQADIAPLMSTLLGLPCPVNSVG 161
            +E R D    DIAP M TLLG+  P    G
Sbjct: 473 DVELREDGILGDIAPTMLTLLGVEQPKEMTG 503


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.327    0.140    0.438 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,837,596
Number of Sequences: 62578
Number of extensions: 755562
Number of successful extensions: 1489
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1480
Number of HSP's gapped (non-prelim): 13
length of query: 767
length of database: 14,973,337
effective HSP length: 106
effective length of query: 661
effective length of database: 8,340,069
effective search space: 5512785609
effective search space used: 5512785609
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)