BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004217
(767 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 53/98 (54%), Gaps = 2/98 (2%)
Query: 114 AFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHE 173
A+S D L S D T+KI D +G CLK L GH + F+P +I SGS D
Sbjct: 96 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDES 154
Query: 174 VRLWNASTAECIGSRDFYR-PIASIAFHASGELLAVAS 210
VR+W+ T +C+ + + P++++ F+ G L+ +S
Sbjct: 155 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 192
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 5/108 (4%)
Query: 106 PPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVV--RFHPLNPT 163
PP S + FSP+GK + + D+T+K+ D G CLK GH+ + + F
Sbjct: 217 PPVSFVK--FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 274
Query: 164 IIASGSLDHEVRLWNASTAECIGSRDFYRPIA-SIAFHASGELLAVAS 210
I SGS D+ V +WN T E + + + S A H + ++A A+
Sbjct: 275 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 322
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 56/118 (47%), Gaps = 7/118 (5%)
Query: 112 AAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPW-VVRFHPLNPTIIASGSL 170
A F+ DG + S+ D +I D +G CLK L P V+F P N I + +L
Sbjct: 178 AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP-NGKYILAATL 236
Query: 171 DHEVRLWNASTAECIGS-----RDFYRPIASIAFHASGELLAVASGHKLYIWRYNMRE 223
D+ ++LW+ S +C+ + + Y A+ + +++ + + +YIW +E
Sbjct: 237 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 294
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 53/98 (54%), Gaps = 2/98 (2%)
Query: 114 AFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHE 173
A+S D L S D T+KI D +G CLK L GH + F+P +I SGS D
Sbjct: 94 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDES 152
Query: 174 VRLWNASTAECIGSRDFYR-PIASIAFHASGELLAVAS 210
VR+W+ T +C+ + + P++++ F+ G L+ +S
Sbjct: 153 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 190
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 5/108 (4%)
Query: 106 PPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVV--RFHPLNPT 163
PP S + FSP+GK + + D+T+K+ D G CLK GH+ + + F
Sbjct: 215 PPVSFVK--FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 272
Query: 164 IIASGSLDHEVRLWNASTAECIGSRDFYRPIA-SIAFHASGELLAVAS 210
I SGS D+ V +WN T E + + + S A H + ++A A+
Sbjct: 273 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 320
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 56/118 (47%), Gaps = 7/118 (5%)
Query: 112 AAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPW-VVRFHPLNPTIIASGSL 170
A F+ DG + S+ D +I D +G CLK L P V+F P N I + +L
Sbjct: 176 AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP-NGKYILAATL 234
Query: 171 DHEVRLWNASTAECIGS-----RDFYRPIASIAFHASGELLAVASGHKLYIWRYNMRE 223
D+ ++LW+ S +C+ + + Y A+ + +++ + + +YIW +E
Sbjct: 235 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 292
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 53/99 (53%), Gaps = 2/99 (2%)
Query: 113 AAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDH 172
A+S D L S D T+KI D +G CLK L GH + F+P +I SGS D
Sbjct: 88 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDE 146
Query: 173 EVRLWNASTAECIGSRDFYR-PIASIAFHASGELLAVAS 210
VR+W+ T +C+ + + P++++ F+ G L+ +S
Sbjct: 147 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 185
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 5/108 (4%)
Query: 106 PPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVV--RFHPLNPT 163
PP S + FSP+GK + + D+T+K+ D G CLK GH+ + + F
Sbjct: 210 PPVSFVK--FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 267
Query: 164 IIASGSLDHEVRLWNASTAECIGSRDFYRPIA-SIAFHASGELLAVAS 210
I SGS D+ V +WN T E + + + S A H + ++A A+
Sbjct: 268 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 315
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 66/143 (46%), Gaps = 9/143 (6%)
Query: 89 EAESLHHLRPKYCPLSPPPRSTIAAA--FSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH 146
E+ + ++ C + P S +A F+ DG + S+ D +I D +G CLK L
Sbjct: 146 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 205
Query: 147 GHRRTPW-VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-----RDFYRPIASIAFH 200
P V+F P N I + +LD+ ++LW+ S +C+ + + Y A+ +
Sbjct: 206 DDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 264
Query: 201 ASGELLAVASGHKLYIWRYNMRE 223
+++ + + +YIW +E
Sbjct: 265 GGKWIVSGSEDNLVYIWNLQTKE 287
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 53/99 (53%), Gaps = 2/99 (2%)
Query: 113 AAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDH 172
A+S D L S D T+KI D +G CLK L GH + F+P +I SGS D
Sbjct: 77 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDE 135
Query: 173 EVRLWNASTAECIGSRDFYR-PIASIAFHASGELLAVAS 210
VR+W+ T +C+ + + P++++ F+ G L+ +S
Sbjct: 136 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 174
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 5/108 (4%)
Query: 106 PPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVV--RFHPLNPT 163
PP S + FSP+GK + + D+T+K+ D G CLK GH+ + + F
Sbjct: 199 PPVSFVK--FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 256
Query: 164 IIASGSLDHEVRLWNASTAECIGSRDFYRPIA-SIAFHASGELLAVAS 210
I SGS D+ V +WN T E + + + S A H + ++A A+
Sbjct: 257 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 304
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 66/143 (46%), Gaps = 9/143 (6%)
Query: 89 EAESLHHLRPKYCPLSPPPRSTIAAA--FSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH 146
E+ + ++ C + P S +A F+ DG + S+ D +I D +G CLK L
Sbjct: 135 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 194
Query: 147 GHRRTPW-VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-----RDFYRPIASIAFH 200
P V+F P N I + +LD+ ++LW+ S +C+ + + Y A+ +
Sbjct: 195 DDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 253
Query: 201 ASGELLAVASGHKLYIWRYNMRE 223
+++ + + +YIW +E
Sbjct: 254 GGKWIVSGSEDNLVYIWNLQTKE 276
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 53/99 (53%), Gaps = 2/99 (2%)
Query: 113 AAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDH 172
A+S D L S D T+KI D +G CLK L GH + F+P +I SGS D
Sbjct: 77 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDE 135
Query: 173 EVRLWNASTAECIGSRDFYR-PIASIAFHASGELLAVAS 210
VR+W+ T +C+ + + P++++ F+ G L+ +S
Sbjct: 136 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 174
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 5/108 (4%)
Query: 106 PPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVV--RFHPLNPT 163
PP S + FSP+GK + + D+T+K+ D G CLK GH+ + + F
Sbjct: 199 PPVSFVK--FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 256
Query: 164 IIASGSLDHEVRLWNASTAECIGSRDFYRPIA-SIAFHASGELLAVAS 210
I SGS D+ V +WN T E + + + S A H + ++A A+
Sbjct: 257 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 304
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 66/143 (46%), Gaps = 9/143 (6%)
Query: 89 EAESLHHLRPKYCPLSPPPRSTIAAA--FSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH 146
E+ + ++ C + P S +A F+ DG + S+ D +I D +G CLK L
Sbjct: 135 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 194
Query: 147 GHRRTPW-VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-----RDFYRPIASIAFH 200
P V+F P N I + +LD+ ++LW+ S +C+ + + Y A+ +
Sbjct: 195 DDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 253
Query: 201 ASGELLAVASGHKLYIWRYNMRE 223
+++ + + +YIW +E
Sbjct: 254 GGKWIVSGSEDNLVYIWNLQTKE 276
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 53/99 (53%), Gaps = 2/99 (2%)
Query: 113 AAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDH 172
A+S D L S D T+KI D +G CLK L GH + F+P +I SGS D
Sbjct: 77 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDE 135
Query: 173 EVRLWNASTAECIGSRDFYR-PIASIAFHASGELLAVAS 210
VR+W+ T +C+ + + P++++ F+ G L+ +S
Sbjct: 136 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 174
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 5/108 (4%)
Query: 106 PPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVV--RFHPLNPT 163
PP S + FSP+GK + + D+T+K+ D G CLK GH+ + + F
Sbjct: 199 PPVSFVK--FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 256
Query: 164 IIASGSLDHEVRLWNASTAECIGSRDFYRPIA-SIAFHASGELLAVAS 210
I SGS D+ V +WN T E + + + S A H + ++A A+
Sbjct: 257 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 304
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 78/175 (44%), Gaps = 12/175 (6%)
Query: 60 GETARKCSGSFSQIFEAGRDARRGL---ASWVEAESLHHLRPKYCPLSPPPRSTIAAA-- 114
G+ + G + +F + + L S+ E+ + ++ C + P S +A
Sbjct: 103 GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH 162
Query: 115 FSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPW-VVRFHPLNPTIIASGSLDHE 173
F+ DG + S+ D +I D +G CLK L P V+F P N I + +LD+
Sbjct: 163 FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP-NGKYILAATLDNT 221
Query: 174 VRLWNASTAECIGS-----RDFYRPIASIAFHASGELLAVASGHKLYIWRYNMRE 223
++LW+ S +C+ + + Y A+ + +++ + + +YIW +E
Sbjct: 222 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 276
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 72/153 (47%), Gaps = 13/153 (8%)
Query: 113 AAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDH 172
A+S D L S D T+KI D +G CLK L GH + F+P +I SGS D
Sbjct: 74 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDE 132
Query: 173 EVRLWNASTAECIGSRDFYR-PIASIAFHASGELLAVASGHKL-YIWRYNMREETSSPR- 229
VR+W+ T C+ + + P++++ F+ G L+ +S L IW +T+S +
Sbjct: 133 SVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW------DTASGQC 186
Query: 230 ---IVLRTRRSLRAVHFHPHAAPLLLTAEVNDL 259
++ + V F P+ +L NDL
Sbjct: 187 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNDL 219
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 67/143 (46%), Gaps = 9/143 (6%)
Query: 89 EAESLHHLRPKYCPLSPPPRSTIAAA--FSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH 146
E+ + ++ C + P S +A F+ DG + S+ D +I D +G CLK L
Sbjct: 132 ESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 191
Query: 147 GHRRTPW-VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-----RDFYRPIASIAFH 200
P V+F P N I + +LD++++LW+ S +C+ + + Y A+ +
Sbjct: 192 DDDNPPVSFVKFSP-NGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 250
Query: 201 ASGELLAVASGHKLYIWRYNMRE 223
+++ + + +YIW +E
Sbjct: 251 GGKWIVSGSEDNMVYIWNLQTKE 273
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 52/108 (48%), Gaps = 5/108 (4%)
Query: 106 PPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVV--RFHPLNPT 163
PP S + FSP+GK + + D+ +K+ D G CLK GH+ + + F
Sbjct: 196 PPVSFVK--FSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 253
Query: 164 IIASGSLDHEVRLWNASTAECIGSRDFYRPIA-SIAFHASGELLAVAS 210
I SGS D+ V +WN T E + + + S A H + ++A A+
Sbjct: 254 WIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 301
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 53/99 (53%), Gaps = 2/99 (2%)
Query: 113 AAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDH 172
A+S D L S D T+KI D +G CLK L GH + F+P +I SGS D
Sbjct: 74 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDE 132
Query: 173 EVRLWNASTAECIGSRDFYR-PIASIAFHASGELLAVAS 210
VR+W+ T +C+ + + P++++ F+ G L+ +S
Sbjct: 133 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 171
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 5/108 (4%)
Query: 106 PPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVV--RFHPLNPT 163
PP S + FSP+GK + + D+T+K+ D G CLK GH+ + + F
Sbjct: 196 PPVSFVK--FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 253
Query: 164 IIASGSLDHEVRLWNASTAECIGSRDFYRPIA-SIAFHASGELLAVAS 210
I SGS D+ V +WN T E + + + S A H + ++A A+
Sbjct: 254 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 301
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 68/147 (46%), Gaps = 9/147 (6%)
Query: 85 ASWVEAESLHHLRPKYCPLSPPPRSTIAAA--FSPDGKTLASTHGDHTVKIIDCQTGSCL 142
S+ E+ + ++ C + P S +A F+ DG + S+ D +I D +G CL
Sbjct: 128 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 187
Query: 143 KVLHGHRRTPW-VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-----RDFYRPIAS 196
K L P V+F P N I + +LD+ ++LW+ S +C+ + + Y A+
Sbjct: 188 KTLIDDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFAN 246
Query: 197 IAFHASGELLAVASGHKLYIWRYNMRE 223
+ +++ + + +YIW +E
Sbjct: 247 FSVTGGKWIVSGSEDNLVYIWNLQTKE 273
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 53/99 (53%), Gaps = 2/99 (2%)
Query: 113 AAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDH 172
A+S D L S D T+KI D +G CLK L GH + F+P +I SGS D
Sbjct: 72 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDE 130
Query: 173 EVRLWNASTAECIGSRDFYR-PIASIAFHASGELLAVAS 210
VR+W+ T +C+ + + P++++ F+ G L+ +S
Sbjct: 131 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 169
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 5/108 (4%)
Query: 106 PPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVV--RFHPLNPT 163
PP S + FSP+GK + + D+T+K+ D G CLK GH+ + + F
Sbjct: 194 PPVSFVK--FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 251
Query: 164 IIASGSLDHEVRLWNASTAECIGSRDFYRPIA-SIAFHASGELLAVAS 210
I SGS D+ V +WN T E + + + S A H + ++A A+
Sbjct: 252 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 299
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 66/143 (46%), Gaps = 9/143 (6%)
Query: 89 EAESLHHLRPKYCPLSPPPRSTIAAA--FSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH 146
E+ + ++ C + P S +A F+ DG + S+ D +I D +G CLK L
Sbjct: 130 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 189
Query: 147 GHRRTPW-VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-----RDFYRPIASIAFH 200
P V+F P N I + +LD+ ++LW+ S +C+ + + Y A+ +
Sbjct: 190 DDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 248
Query: 201 ASGELLAVASGHKLYIWRYNMRE 223
+++ + + +YIW +E
Sbjct: 249 GGKWIVSGSEDNLVYIWNLQTKE 271
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 53/99 (53%), Gaps = 2/99 (2%)
Query: 113 AAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDH 172
A+S D L S D T+KI D +G CLK L GH + F+P +I SGS D
Sbjct: 71 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDE 129
Query: 173 EVRLWNASTAECIGSRDFYR-PIASIAFHASGELLAVAS 210
VR+W+ T +C+ + + P++++ F+ G L+ +S
Sbjct: 130 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 168
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 5/108 (4%)
Query: 106 PPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVV--RFHPLNPT 163
PP S + FSP+GK + + D+T+K+ D G CLK GH+ + + F
Sbjct: 193 PPVSFVK--FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 250
Query: 164 IIASGSLDHEVRLWNASTAECIGSRDFYRPIA-SIAFHASGELLAVAS 210
I SGS D+ V +WN T E + + + S A H + ++A A+
Sbjct: 251 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 298
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 66/143 (46%), Gaps = 9/143 (6%)
Query: 89 EAESLHHLRPKYCPLSPPPRSTIAAA--FSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH 146
E+ + ++ C + P S +A F+ DG + S+ D +I D +G CLK L
Sbjct: 129 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 188
Query: 147 GHRRTPW-VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-----RDFYRPIASIAFH 200
P V+F P N I + +LD+ ++LW+ S +C+ + + Y A+ +
Sbjct: 189 DDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 247
Query: 201 ASGELLAVASGHKLYIWRYNMRE 223
+++ + + +YIW +E
Sbjct: 248 GGKWIVSGSEDNLVYIWNLQTKE 270
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 53/99 (53%), Gaps = 2/99 (2%)
Query: 113 AAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDH 172
A+S D L S D T+KI D +G CLK L GH + F+P +I SGS D
Sbjct: 74 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDE 132
Query: 173 EVRLWNASTAECIGSRDFYR-PIASIAFHASGELLAVAS 210
VR+W+ T +C+ + + P++++ F+ G L+ +S
Sbjct: 133 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 171
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 5/108 (4%)
Query: 106 PPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVV--RFHPLNPT 163
PP S + FSP+GK + + D+T+K+ D G CLK GH+ + + F
Sbjct: 196 PPVSFVK--FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 253
Query: 164 IIASGSLDHEVRLWNASTAECIGSRDFYRPIA-SIAFHASGELLAVAS 210
I SGS D+ V +WN T E + + + S A H + ++A A+
Sbjct: 254 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 301
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 68/147 (46%), Gaps = 9/147 (6%)
Query: 85 ASWVEAESLHHLRPKYCPLSPPPRSTIAAA--FSPDGKTLASTHGDHTVKIIDCQTGSCL 142
S+ E+ + ++ C + P S +A F+ DG + S+ D +I D +G CL
Sbjct: 128 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 187
Query: 143 KVLHGHRRTPW-VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-----RDFYRPIAS 196
K L P V+F P N I + +LD+ ++LW+ S +C+ + + Y A+
Sbjct: 188 KTLIDDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFAN 246
Query: 197 IAFHASGELLAVASGHKLYIWRYNMRE 223
+ +++ + + +YIW +E
Sbjct: 247 FSVTGGKWIVSGSEDNLVYIWNLQTKE 273
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 53/99 (53%), Gaps = 2/99 (2%)
Query: 113 AAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDH 172
A+S D L S D T+KI D +G CLK L GH + F+P +I SGS D
Sbjct: 71 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDE 129
Query: 173 EVRLWNASTAECIGSRDFYR-PIASIAFHASGELLAVAS 210
VR+W+ T +C+ + + P++++ F+ G L+ +S
Sbjct: 130 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 168
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 5/108 (4%)
Query: 106 PPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVV--RFHPLNPT 163
PP S + FSP+GK + + D+T+K+ D G CLK GH+ + + F
Sbjct: 193 PPVSFVK--FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 250
Query: 164 IIASGSLDHEVRLWNASTAECIGSRDFYRPIA-SIAFHASGELLAVAS 210
I SGS D+ V +WN T E + + + S A H + ++A A+
Sbjct: 251 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 298
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 66/143 (46%), Gaps = 9/143 (6%)
Query: 89 EAESLHHLRPKYCPLSPPPRSTIAAA--FSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH 146
E+ + ++ C + P S +A F+ DG + S+ D +I D +G CLK L
Sbjct: 129 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 188
Query: 147 GHRRTPW-VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-----RDFYRPIASIAFH 200
P V+F P N I + +LD+ ++LW+ S +C+ + + Y A+ +
Sbjct: 189 DDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 247
Query: 201 ASGELLAVASGHKLYIWRYNMRE 223
+++ + + +YIW +E
Sbjct: 248 GGKWIVSGSEDNLVYIWNLQTKE 270
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 53/99 (53%), Gaps = 2/99 (2%)
Query: 113 AAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDH 172
A+S D L S D T+KI D +G CLK L GH + F+P +I SGS D
Sbjct: 76 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDE 134
Query: 173 EVRLWNASTAECIGSRDFYR-PIASIAFHASGELLAVAS 210
VR+W+ T +C+ + + P++++ F+ G L+ +S
Sbjct: 135 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 173
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 5/108 (4%)
Query: 106 PPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVV--RFHPLNPT 163
PP S + FSP+GK + + D+T+K+ D G CLK GH+ + + F
Sbjct: 198 PPVSFVK--FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 255
Query: 164 IIASGSLDHEVRLWNASTAECIGSRDFYRPIA-SIAFHASGELLAVAS 210
I SGS D+ V +WN T E + + + S A H + ++A A+
Sbjct: 256 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 303
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 66/143 (46%), Gaps = 9/143 (6%)
Query: 89 EAESLHHLRPKYCPLSPPPRSTIAAA--FSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH 146
E+ + ++ C + P S +A F+ DG + S+ D +I D +G CLK L
Sbjct: 134 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 193
Query: 147 GHRRTPW-VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-----RDFYRPIASIAFH 200
P V+F P N I + +LD+ ++LW+ S +C+ + + Y A+ +
Sbjct: 194 DDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 252
Query: 201 ASGELLAVASGHKLYIWRYNMRE 223
+++ + + +YIW +E
Sbjct: 253 GGKWIVSGSEDNLVYIWNLQTKE 275
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 53/99 (53%), Gaps = 2/99 (2%)
Query: 113 AAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDH 172
A+S D L S D T+KI D +G CLK L GH + F+P +I SGS D
Sbjct: 67 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDE 125
Query: 173 EVRLWNASTAECIGSRDFYR-PIASIAFHASGELLAVAS 210
VR+W+ T +C+ + + P++++ F+ G L+ +S
Sbjct: 126 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 164
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 5/108 (4%)
Query: 106 PPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVV--RFHPLNPT 163
PP S + FSP+GK + + D+T+K+ D G CLK GH+ + + F
Sbjct: 189 PPVSFVK--FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 246
Query: 164 IIASGSLDHEVRLWNASTAECIGSRDFYRPIA-SIAFHASGELLAVAS 210
I SGS D+ V +WN T E + + + S A H + ++A A+
Sbjct: 247 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 294
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 66/143 (46%), Gaps = 9/143 (6%)
Query: 89 EAESLHHLRPKYCPLSPPPRSTIAAA--FSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH 146
E+ + ++ C + P S +A F+ DG + S+ D +I D +G CLK L
Sbjct: 125 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 184
Query: 147 GHRRTPW-VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-----RDFYRPIASIAFH 200
P V+F P N I + +LD+ ++LW+ S +C+ + + Y A+ +
Sbjct: 185 DDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 243
Query: 201 ASGELLAVASGHKLYIWRYNMRE 223
+++ + + +YIW +E
Sbjct: 244 GGKWIVSGSEDNLVYIWNLQTKE 266
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 62/133 (46%), Gaps = 10/133 (7%)
Query: 87 WVEAESLHHLRPKYCPLSPPPRSTIAA--------AFSPDGKTLASTHGDHTVKIIDCQT 138
W+ A S L + TI+ A+S D L S D T+KI D +
Sbjct: 40 WLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS 99
Query: 139 GSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYR-PIASI 197
G CLK L GH + F+P +I SGS D VR+W+ T +C+ + + P++++
Sbjct: 100 GKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 158
Query: 198 AFHASGELLAVAS 210
F+ G L+ +S
Sbjct: 159 HFNRDGSLIVSSS 171
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 5/108 (4%)
Query: 106 PPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVV--RFHPLNPT 163
PP S + FSP+GK + + D+T+K+ D G CLK GH+ + + F
Sbjct: 196 PPVSFVK--FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 253
Query: 164 IIASGSLDHEVRLWNASTAECIGSRDFYRPIA-SIAFHASGELLAVAS 210
I SGS D+ V +WN T E + + + S A H + ++A A+
Sbjct: 254 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 301
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 66/143 (46%), Gaps = 9/143 (6%)
Query: 89 EAESLHHLRPKYCPLSPPPRSTIAAA--FSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH 146
E+ + ++ C + P S +A F+ DG + S+ D +I D +G CLK L
Sbjct: 132 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 191
Query: 147 GHRRTPW-VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-----RDFYRPIASIAFH 200
P V+F P N I + +LD+ ++LW+ S +C+ + + Y A+ +
Sbjct: 192 DDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 250
Query: 201 ASGELLAVASGHKLYIWRYNMRE 223
+++ + + +YIW +E
Sbjct: 251 GGKWIVSGSEDNLVYIWNLQTKE 273
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 53/99 (53%), Gaps = 2/99 (2%)
Query: 113 AAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDH 172
A+S D L S D T+KI D +G CLK L GH + F+P +I SGS D
Sbjct: 70 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDE 128
Query: 173 EVRLWNASTAECIGSRDFYR-PIASIAFHASGELLAVAS 210
VR+W+ T +C+ + + P++++ F+ G L+ +S
Sbjct: 129 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 167
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 5/108 (4%)
Query: 106 PPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVV--RFHPLNPT 163
PP S + FSP+GK + + D+T+K+ D G CLK GH+ + + F
Sbjct: 192 PPVSFVK--FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 249
Query: 164 IIASGSLDHEVRLWNASTAECIGSRDFYRPIA-SIAFHASGELLAVAS 210
I SGS D+ V +WN T E + + + S A H + ++A A+
Sbjct: 250 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 297
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 66/143 (46%), Gaps = 9/143 (6%)
Query: 89 EAESLHHLRPKYCPLSPPPRSTIAAA--FSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH 146
E+ + ++ C + P S +A F+ DG + S+ D +I D +G CLK L
Sbjct: 128 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 187
Query: 147 GHRRTPW-VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-----RDFYRPIASIAFH 200
P V+F P N I + +LD+ ++LW+ S +C+ + + Y A+ +
Sbjct: 188 DDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 246
Query: 201 ASGELLAVASGHKLYIWRYNMRE 223
+++ + + +YIW +E
Sbjct: 247 GGKWIVSGSEDNLVYIWNLQTKE 269
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 52/99 (52%), Gaps = 2/99 (2%)
Query: 113 AAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDH 172
A+S D L S D T+KI D +G CLK L GH + F+P +I SGS D
Sbjct: 74 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDE 132
Query: 173 EVRLWNASTAECIGSRDFYR-PIASIAFHASGELLAVAS 210
VR+W+ T C+ + + P++++ F+ G L+ +S
Sbjct: 133 SVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSS 171
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 5/108 (4%)
Query: 106 PPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVV--RFHPLNPT 163
PP S + FSP+GK + + D+T+K+ D G CLK GH+ + + F
Sbjct: 196 PPVSFVK--FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 253
Query: 164 IIASGSLDHEVRLWNASTAECIGSRDFYRPIA-SIAFHASGELLAVAS 210
I SGS D+ V +WN T E + + + S A H + ++A A+
Sbjct: 254 WIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 301
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 66/143 (46%), Gaps = 9/143 (6%)
Query: 89 EAESLHHLRPKYCPLSPPPRSTIAAA--FSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH 146
E+ + ++ C + P S +A F+ DG + S+ D +I D +G CLK L
Sbjct: 132 ESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 191
Query: 147 GHRRTPW-VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-----RDFYRPIASIAFH 200
P V+F P N I + +LD+ ++LW+ S +C+ + + Y A+ +
Sbjct: 192 DDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 250
Query: 201 ASGELLAVASGHKLYIWRYNMRE 223
+++ + + +YIW +E
Sbjct: 251 GGKWIVSGSEDNMVYIWNLQTKE 273
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 69/142 (48%), Gaps = 15/142 (10%)
Query: 114 AFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHE 173
AFSPDG+T+AS D TVK+ + + G L+ L GH + W V F P + T IAS S D
Sbjct: 392 AFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDDQT-IASASDDKT 449
Query: 174 VRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVL 232
V+LWN + + +AF G+ +A AS K + +W N + +L
Sbjct: 450 VKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ--------LL 501
Query: 233 RT----RRSLRAVHFHPHAAPL 250
+T S+R V F P +
Sbjct: 502 QTLTGHSSSVRGVAFSPDGQTI 523
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 68/142 (47%), Gaps = 15/142 (10%)
Query: 114 AFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHE 173
AFSPDG+T+AS D TVK+ + + G L+ L GH + W V F P T IAS S D
Sbjct: 105 AFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQT-IASASDDKT 162
Query: 174 VRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVL 232
V+LWN + + +AF G+ +A AS K + +W N + +L
Sbjct: 163 VKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ--------LL 214
Query: 233 RT----RRSLRAVHFHPHAAPL 250
+T S+R V F P +
Sbjct: 215 QTLTGHSSSVRGVAFSPDGQTI 236
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 59/119 (49%), Gaps = 3/119 (2%)
Query: 103 LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNP 162
L+ S AFSPDG+T+AS D TVK+ + + G L+ L GH + W V F P
Sbjct: 135 LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQ 193
Query: 163 TIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHK-LYIWRYN 220
T IAS S D V+LWN + + +AF G+ +A AS K + +W N
Sbjct: 194 T-IASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN 251
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 56/108 (51%), Gaps = 3/108 (2%)
Query: 114 AFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHE 173
AFSPDG+T+AS D TVK+ + + G L+ L GH + W V F P T IAS S D
Sbjct: 23 AFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQT-IASASDDKT 80
Query: 174 VRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHK-LYIWRYN 220
V+LWN + + +AF G+ +A AS K + +W N
Sbjct: 81 VKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN 128
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 70/153 (45%), Gaps = 15/153 (9%)
Query: 103 LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNP 162
L+ S AF PDG+T+AS D TVK+ + + G L+ L GH + W V F P
Sbjct: 258 LTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQ 316
Query: 163 TIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHK-LYIWRYNM 221
T IAS S D V+LWN + + +AF G+ +A AS K + +W N
Sbjct: 317 T-IASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG 375
Query: 222 REETSSPRIVLRT----RRSLRAVHFHPHAAPL 250
+ +L+T S+R V F P +
Sbjct: 376 Q--------LLQTLTGHSSSVRGVAFSPDGQTI 400
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 59/119 (49%), Gaps = 3/119 (2%)
Query: 103 LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNP 162
L+ S AFSPDG+T+AS D TVK+ + + G L+ L GH + W V F P
Sbjct: 299 LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQHLQTLTGHSSSVWGVAFSPDGQ 357
Query: 163 TIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHK-LYIWRYN 220
T IAS S D V+LWN + + +AF G+ +A AS K + +W N
Sbjct: 358 T-IASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN 415
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 114 AFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHE 173
AFSPDG+T+AS D TVK+ + + G L+ L GH + W V F P TI AS S D
Sbjct: 515 AFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTI-ASASSDKT 572
Query: 174 VRLWN 178
V+LWN
Sbjct: 573 VKLWN 577
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 54/106 (50%), Gaps = 3/106 (2%)
Query: 114 AFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHE 173
AFSPDG+T+AS D TVK+ + + G L+ L GH + V F P T IAS S D
Sbjct: 474 AFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQT-IASASDDKT 531
Query: 174 VRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHK-LYIWR 218
V+LWN + + +AF G+ +A AS K + +W
Sbjct: 532 VKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 57/119 (47%), Gaps = 3/119 (2%)
Query: 103 LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNP 162
L+ S AFSPD +T+AS D TVK+ + + G L+ L GH + V F P
Sbjct: 422 LTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQ 480
Query: 163 TIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHK-LYIWRYN 220
T IAS S D V+LWN + + +AF G+ +A AS K + +W N
Sbjct: 481 T-IASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN 538
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 103 LSPPPRSTIAAAFSPDGKTLASTHGDHTVKI 133
L+ S AFSPDG+T+AS D TVK+
Sbjct: 545 LTGHSSSVWGVAFSPDGQTIASASSDKTVKL 575
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 78/164 (47%), Gaps = 10/164 (6%)
Query: 102 PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS--CLKVL-HGHRRTPWVVRFH 158
P P R A ++P G LAS GD ++I + S C VL GH+RT V +
Sbjct: 12 PAHPDSRCWFLA-WNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWS 70
Query: 159 PLNPTIIASGSLDHEVRLW--NASTAECIGSRDFYR-PIASIAFHASGELLAVASGHK-L 214
P +AS S D +W N EC+ + + + + S+A+ SG LLA S K +
Sbjct: 71 PCG-NYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSV 129
Query: 215 YIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVND 258
++W + +E ++ + ++ V +HP + LL +A +D
Sbjct: 130 WVWEVDEEDEYECVSVLNSHTQDVKHVVWHP-SQELLASASYDD 172
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 10/96 (10%)
Query: 115 FSPDGKTLASTHGDHTVKIIDCQTGS--CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDH 172
+ P + LAS D TVK+ + C L GH T W + F P + +AS S D
Sbjct: 158 WHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDP-SGQRLASCSDDR 216
Query: 173 EVRLW------NASTAECIGSRDFYRPIASIA-FHA 201
VR+W N C GS ++ I +++ FH+
Sbjct: 217 TVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHS 252
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 112 AAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHP-LNPTIIASGSL 170
+ + P+G + S D T+K+ + QTG C+K GHR WV P + T+IAS S
Sbjct: 197 SVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHRE--WVRMVRPNQDGTLIASCSN 254
Query: 171 DHEVRLWNASTAEC 184
D VR+W +T EC
Sbjct: 255 DQTVRVWVVATKEC 268
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 53/115 (46%), Gaps = 9/115 (7%)
Query: 114 AFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHE 173
+F GK LAS D T+K+ D Q C++ +HGH V P N I S S D
Sbjct: 157 SFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMP-NGDHIVSASRDKT 215
Query: 174 VRLWNASTAECI----GSRDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMRE 223
+++W T C+ G R++ R + + G L+A S + + +W +E
Sbjct: 216 IKMWEVQTGYCVKTFTGHREWVRMVRP---NQDGTLIASCSNDQTVRVWVVATKE 267
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 115 FSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEV 174
F GK + S D T+++ D + C+K L+ H + FH P ++ +GS+D V
Sbjct: 346 FHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVV-TGSVDQTV 404
Query: 175 RLW 177
++W
Sbjct: 405 KVW 407
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 49/114 (42%), Gaps = 7/114 (6%)
Query: 100 YCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWV--VRF 157
Y +S S + P G L S D T+K+ D TG CL L GH WV V F
Sbjct: 290 YSSISEATGSETKKSGKP-GPFLLSGSRDKTIKMWDVSTGMCLMTLVGH--DNWVRGVLF 346
Query: 158 HPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRP-IASIAFHASGELLAVAS 210
H I++ D +R+W+ C+ + + + + S+ FH + + S
Sbjct: 347 HSGGKFILSCAD-DKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGS 399
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 52/105 (49%), Gaps = 3/105 (2%)
Query: 115 FSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEV 174
F P + S D T+K+ D +TG + L GH + + F + ++AS S D +
Sbjct: 116 FHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH-SGKLLASCSADMTI 174
Query: 175 RLWNASTAECIGSRDFY-RPIASIAFHASGELLAVASGHK-LYIW 217
+LW+ ECI + + ++S++ +G+ + AS K + +W
Sbjct: 175 KLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMW 219
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 62/131 (47%), Gaps = 5/131 (3%)
Query: 84 LASWVEAESLHHLRPKYCPLSPPPRSTI---AAAFSPDGKTLASTHGDHTVKIIDCQTGS 140
L + + +S + P+ S P S + + FSPDGK LA+ D ++I D +
Sbjct: 97 LVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRK 156
Query: 141 CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFH 200
+ +L GH + + + + P ++ SGS D VR+W+ T +C + + ++A
Sbjct: 157 IVMILQGHEQDIYSLDYFPSGDKLV-SGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVS 215
Query: 201 -ASGELLAVAS 210
G+ +A S
Sbjct: 216 PGDGKYIAAGS 226
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 115 FSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEV 174
+ P G L S GD TV+I D +TG C L V P + IA+GSLD V
Sbjct: 173 YFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVT-TVAVSPGDGKYIAAGSLDRAV 231
Query: 175 RLWNASTA 182
R+W++ T
Sbjct: 232 RVWDSETG 239
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 76/168 (45%), Gaps = 34/168 (20%)
Query: 96 LRPKYCPLSPPPRSTIA-AAFSP-DGKTLASTHGDHTVKIIDCQTGSCLKVLH------- 146
LR C L+ + A SP DGK +A+ D V++ D +TG ++ L
Sbjct: 194 LRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGT 253
Query: 147 GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAE------------C----IGSRDF 190
GH+ + + V F +++ SGSLD V+LWN A C IG +DF
Sbjct: 254 GHKDSVYSVVFTRDGQSVV-SGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDF 312
Query: 191 YRPIASIAFHASGE-LLAVASGHKLYIWRYNMREETSSPRIVLRTRRS 237
+ S+A + E +L+ + + W +++ +P ++L+ R+
Sbjct: 313 ---VLSVATTQNDEYILSGSKDRGVLFW----DKKSGNPLLMLQGHRN 353
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
Query: 117 PDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRL 176
PD + + D T+KI D QT SC+ L GH FHP P II SGS D +++
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIII-SGSEDGTLKI 254
Query: 177 WNASTAECIGSRDF-YRPIASIAFHASGELLAVASG 211
WN+ST + + + IA H +G +ASG
Sbjct: 255 WNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASG 290
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
Query: 99 KYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCL-KVLHGHRRTPWVVRF 157
K P + A P + S D TVK+ + + L + GH V F
Sbjct: 89 KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAF 148
Query: 158 HPLNPTIIASGSLDHEVRLW 177
+P +P+ ASG LD V++W
Sbjct: 149 NPKDPSTFASGCLDRTVKVW 168
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
Query: 117 PDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRL 176
PD + + D T+KI D QT SC+ L GH FHP P II SGS D +++
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKI 254
Query: 177 WNASTAECIGSRDF-YRPIASIAFHASGELLAVASG 211
WN+ST + + + IA H +G +ASG
Sbjct: 255 WNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASG 290
Score = 36.6 bits (83), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
Query: 99 KYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCL-KVLHGHRRTPWVVRF 157
K P + A P + S D TVK+ + + L + GH V F
Sbjct: 89 KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAF 148
Query: 158 HPLNPTIIASGSLDHEVRLW 177
+P +P+ ASG LD V++W
Sbjct: 149 NPKDPSTFASGCLDRTVKVW 168
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
Query: 117 PDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRL 176
PD + + D T+KI D QT SC+ L GH FHP P II SGS D +++
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKI 254
Query: 177 WNASTAECIGSRDF-YRPIASIAFHASGELLAVASG 211
WN+ST + + + IA H +G +ASG
Sbjct: 255 WNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASG 290
Score = 36.6 bits (83), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
Query: 99 KYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCL-KVLHGHRRTPWVVRF 157
K P + A P + S D TVK+ + + L + GH V F
Sbjct: 89 KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAF 148
Query: 158 HPLNPTIIASGSLDHEVRLW 177
+P +P+ ASG LD V++W
Sbjct: 149 NPKDPSTFASGCLDRTVKVW 168
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
Query: 117 PDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRL 176
PD + + D T+KI D QT SC+ L GH FHP P II SGS D +++
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIII-SGSEDGTLKI 254
Query: 177 WNASTAECIGSRDF-YRPIASIAFHASGELLAVASG 211
WN+ST + + + IA H +G +ASG
Sbjct: 255 WNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASG 290
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
Query: 99 KYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCL-KVLHGHRRTPWVVRF 157
K P + A P + S D TVK+ + + L + GH V F
Sbjct: 89 KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAF 148
Query: 158 HPLNPTIIASGSLDHEVRLW 177
+P +P+ ASG LD V++W
Sbjct: 149 NPKDPSTFASGCLDRTVKVW 168
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 71/156 (45%), Gaps = 9/156 (5%)
Query: 74 FEAGRDARRGLA--SWVEAESLHHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTV 131
+A ++ G+ W+ +++ +L + P + A FS DG+ +AS D T+
Sbjct: 588 LQAKQEVDNGMLYLEWINKKNITNLSR--LVVRPHTDAVYHACFSEDGQRIASCGADKTL 645
Query: 132 KIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFY 191
++ +TG L + H F + IA+ S+D +V++WN+ T E + + D +
Sbjct: 646 QVFKAETGEKLLEIKAHEDEVLCCAF-STDDRFIATCSVDKKVKIWNSMTGELVHTYDEH 704
Query: 192 -RPIASIAFHASGELLAVASGHK---LYIWRYNMRE 223
+ F S L +A+G L +W N +E
Sbjct: 705 SEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKE 740
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Query: 115 FSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEV 174
F+ D KTL S+ D +++ + Q C+ L GH+ T V F L + + S S D V
Sbjct: 1017 FTADEKTLISSSDDAEIQVWNWQLDKCI-FLRGHQET--VKDFRLLKNSRLLSWSFDGTV 1073
Query: 175 RLWNASTAECIGSRDF 190
++WN T +DF
Sbjct: 1074 KVWNIITGN--KEKDF 1087
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/106 (19%), Positives = 45/106 (42%), Gaps = 1/106 (0%)
Query: 112 AAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLD 171
SP + +A + ++I++ + H++T W ++F T+I+S D
Sbjct: 972 CCCLSPHLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEKTLISSSD-D 1030
Query: 172 HEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIW 217
E+++WN +CI R + + LL+ + + +W
Sbjct: 1031 AEIQVWNWQLDKCIFLRGHQETVKDFRLLKNSRLLSWSFDGTVKVW 1076
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 60/146 (41%), Gaps = 14/146 (9%)
Query: 109 STIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASG 168
+ ++ S D +ST D T KI L L GH F ++ T++A+G
Sbjct: 1093 TVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAF-SVDSTLLATG 1151
Query: 169 SLDHEVRLWNASTAECI---------GSRDFYRPIASIAFHASGELLAVASGHKLYIWRY 219
+ E+R+WN S E + G+ + + F G++L A G YI +
Sbjct: 1152 DDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLISAGG---YIKWW 1208
Query: 220 NMREETSSPRIVLRTRRSLRAVHFHP 245
N+ SS + +L+ +H P
Sbjct: 1209 NVVTGESS-QTFYTNGTNLKKIHVSP 1233
Score = 37.0 bits (84), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 52/110 (47%), Gaps = 15/110 (13%)
Query: 122 LASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST 181
LA+ D +K+ D C + GH + RF P + ++AS S D ++LW+A++
Sbjct: 722 LATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSP-DDKLLASCSADGTLKLWDATS 780
Query: 182 A---ECIGSRDFYRP-----------IASIAFHASGELLAVASGHKLYIW 217
A + I + F+ + ++ A G + VA+ +K++++
Sbjct: 781 ANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAAKNKIFLF 830
Score = 35.8 bits (81), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Query: 99 KYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRF- 157
K + + AFS D + +A+ D VKI + TG + H F
Sbjct: 655 KLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFT 714
Query: 158 HPLNPTIIASGSLDHEVRLWNASTAEC 184
+ + ++A+GS D ++LW+ + EC
Sbjct: 715 NSSHHLLLATGSSDCFLKLWDLNQKEC 741
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 119 GKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWN 178
G + S D+T+K+ TG CL+ L GH W + + II SGS D +++WN
Sbjct: 129 GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQ---MRDNIIISGSTDRTLKVWN 185
Query: 179 ASTAECI 185
A T ECI
Sbjct: 186 AETGECI 192
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 118 DGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLW 177
DG+ + S D VK+ D +T +CL L GH + ++F ++ + SGSLD +R+W
Sbjct: 248 DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIH---VVSGSLDTSIRVW 304
Query: 178 NASTAECI 185
+ T CI
Sbjct: 305 DVETGNCI 312
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 43/103 (41%), Gaps = 6/103 (5%)
Query: 101 CPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPL 160
C + ++ + L S + D TVKI D +TG CL+ L G + V
Sbjct: 311 CIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF 370
Query: 161 NPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASG 203
N + + S D V+LW+ T E F R + ++ SG
Sbjct: 371 NKNFVITSSDDGTVKLWDLKTGE------FIRNLVTLESGGSG 407
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 128 DHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECI 185
D T+K+ + +TG C+ L+GH T VR L+ + SGS D +R+W+ T +C+
Sbjct: 178 DRTLKVWNAETGECIHTLYGHTST---VRCMHLHEKRVVSGSRDATLRVWDIETGQCL 232
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 120 KTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNA 179
K + S D T+++ D +TG CL VL GH VR + + SG+ D V++W+
Sbjct: 210 KRVVSGSRDATLRVWDIETGQCLHVLMGHVAA---VRCVQYDGRRVVSGAYDFMVKVWDP 266
Query: 180 STAECI 185
T C+
Sbjct: 267 ETETCL 272
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 11/100 (11%)
Query: 131 VKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECI----- 185
++II+ T C+K GH ++FHP +P ++ S S DH +RLWN T +
Sbjct: 133 IRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG 192
Query: 186 --GSRDFYRPIASIAFHASGE-LLAVASGHKLYIWRYNMR 222
G RD + S + GE +++ H L +WR N +
Sbjct: 193 VEGHRD---EVLSADYDLLGEKIMSCGMDHSLKLWRINSK 229
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 52/107 (48%), Gaps = 11/107 (10%)
Query: 131 VKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECI----- 185
++II+ T C+K GH ++FHP +P ++ S S DH +RLWN T +
Sbjct: 92 IRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG 151
Query: 186 --GSRDFYRPIASIAFHASGE-LLAVASGHKLYIWRYNMREETSSPR 229
G RD + S + GE +++ H L +WR N + ++ +
Sbjct: 152 VEGHRD---EVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIK 195
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 67/149 (44%), Gaps = 7/149 (4%)
Query: 79 DARRGLASWVEAESLHHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT 138
D R W+ +++ +L + P + A FS DG+ +AS D T+++ +T
Sbjct: 596 DTGRLYLEWINKKTIKNLSR--LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAET 653
Query: 139 GSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFY-RPIASI 197
G L + H F + + IA+ S D +V++W+++T + + + D + +
Sbjct: 654 GEKLLDIKAHEDEVLCCAFSS-DDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCC 712
Query: 198 AFHASGELLAVASGHK---LYIWRYNMRE 223
F L +A+G L +W N +E
Sbjct: 713 HFTNKSNHLLLATGSNDFFLKLWDLNQKE 741
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 115 FSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEV 174
F+ DGKTL S+ D +++ + QTG + L H+ T V F L + + S S D V
Sbjct: 1018 FTADGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQET--VKDFRLLQDSRLLSWSFDGTV 1074
Query: 175 RLWNASTAECIGSRDF 190
++WN T RDF
Sbjct: 1075 KVWNVITGRI--ERDF 1088
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 54/140 (38%), Gaps = 6/140 (4%)
Query: 99 KYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRF- 157
K + + AFS D +A+ D VKI D TG + H F
Sbjct: 656 KLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFT 715
Query: 158 HPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASGH-KLY 215
+ N ++A+GS D ++LW+ + EC + + F ELLA S L
Sbjct: 716 NKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLR 775
Query: 216 IWRY---NMREETSSPRIVL 232
+W N R+ + R L
Sbjct: 776 LWDVRSANERKSINVKRFFL 795
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 109 STIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASG 168
+ ++ A S D +ST D T KI S L L GH F L+ ++A+G
Sbjct: 1094 TVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAF-SLDGILLATG 1152
Query: 169 SLDHEVRLWNASTAECIGS 187
+ E+R+WN S + + S
Sbjct: 1153 DDNGEIRIWNVSDGQLLHS 1171
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 52/107 (48%), Gaps = 11/107 (10%)
Query: 131 VKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECI----- 185
++II+ T C+K GH ++FHP +P ++ S S DH +RLWN T +
Sbjct: 97 IRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG 156
Query: 186 --GSRDFYRPIASIAFHASGE-LLAVASGHKLYIWRYNMREETSSPR 229
G RD + S + GE +++ H L +WR N + ++ +
Sbjct: 157 VEGHRD---EVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIK 200
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 52/107 (48%), Gaps = 11/107 (10%)
Query: 131 VKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECI----- 185
++II+ T C+K GH ++FHP +P ++ S S DH +RLWN T +
Sbjct: 96 IRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG 155
Query: 186 --GSRDFYRPIASIAFHASGE-LLAVASGHKLYIWRYNMREETSSPR 229
G RD + S + GE +++ H L +WR N + ++ +
Sbjct: 156 VEGHRD---EVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIK 199
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 52/107 (48%), Gaps = 11/107 (10%)
Query: 131 VKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECI----- 185
++II+ T C+K GH ++FHP +P ++ S S DH +RLWN T +
Sbjct: 96 IRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG 155
Query: 186 --GSRDFYRPIASIAFHASGE-LLAVASGHKLYIWRYNMREETSSPR 229
G RD + S + GE +++ H L +WR N + ++ +
Sbjct: 156 VEGHRD---EVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIK 199
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 67/149 (44%), Gaps = 7/149 (4%)
Query: 79 DARRGLASWVEAESLHHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT 138
D R W+ +++ +L + P + A FS DG+ +AS D T+++ +T
Sbjct: 589 DTGRLYLEWINKKTIKNLSR--LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAET 646
Query: 139 GSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFY-RPIASI 197
G L + H F + + IA+ S D +V++W+++T + + + D + +
Sbjct: 647 GEKLLDIKAHEDEVLCCAFSS-DDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCC 705
Query: 198 AFHASGELLAVASGHK---LYIWRYNMRE 223
F L +A+G L +W N +E
Sbjct: 706 HFTNKSNHLLLATGSNDFFLKLWDLNQKE 734
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 115 FSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEV 174
F+ DGKTL S+ D +++ + QTG + L H+ T V F L + + S S D V
Sbjct: 1011 FTADGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQET--VKDFRLLQDSRLLSWSFDGTV 1067
Query: 175 RLWNASTAECIGSRDF 190
++WN T RDF
Sbjct: 1068 KVWNVITGRI--ERDF 1081
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 54/140 (38%), Gaps = 6/140 (4%)
Query: 99 KYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRF- 157
K + + AFS D +A+ D VKI D TG + H F
Sbjct: 649 KLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFT 708
Query: 158 HPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASGH-KLY 215
+ N ++A+GS D ++LW+ + EC + + F ELLA S L
Sbjct: 709 NKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLR 768
Query: 216 IWRY---NMREETSSPRIVL 232
+W N R+ + R L
Sbjct: 769 LWDVRSANERKSINVKRFFL 788
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 109 STIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASG 168
+ ++ A S D +ST D T KI S L L GH F L+ ++A+G
Sbjct: 1087 TVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAF-SLDGILLATG 1145
Query: 169 SLDHEVRLWNASTAECIGS 187
+ E+R+WN S + + S
Sbjct: 1146 DDNGEIRIWNVSDGQLLHS 1164
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 49/100 (49%), Gaps = 3/100 (3%)
Query: 118 DGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLW 177
D K + S GD T+K+ + T ++ L+GH+R +++ ++ SGS D+ +RLW
Sbjct: 265 DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLW 321
Query: 178 NASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIW 217
+ C+ + + + + +++ A K+ +W
Sbjct: 322 DIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVW 361
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 63/127 (49%), Gaps = 5/127 (3%)
Query: 118 DGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLW 177
D + + S D+T+KI D T C ++L GH + +++ + +I +GS D VR+W
Sbjct: 142 DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY---DERVIITGSSDSTVRVW 198
Query: 178 NASTAECIGSRDFY-RPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRR 236
+ +T E + + + + + F+ +G ++ + + +W + + R+++ R
Sbjct: 199 DVNTGEMLNTLIHHCEAVLHLRFN-NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRA 257
Query: 237 SLRAVHF 243
++ V F
Sbjct: 258 AVNVVDF 264
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 113 AAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDH 172
A + + S D+T+++ D + G+CL+VL GH +RF + I SG+ D
Sbjct: 300 ACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF---DNKRIVSGAYDG 356
Query: 173 EVRLWNASTA 182
++++W+ A
Sbjct: 357 KIKVWDLVAA 366
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 18/113 (15%)
Query: 131 VKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAE-CIGSRD 189
V++ D ++GSC +L GHR+ V + P I+A+ S D V+LW+ A C+ + D
Sbjct: 168 VQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLD 227
Query: 190 FYR----------------PIASIAFHASG-ELLAVASGHKLYIWRYNMREET 225
+ + + F + G LL V + +++ +W + E T
Sbjct: 228 QHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENT 280
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 54/116 (46%), Gaps = 13/116 (11%)
Query: 115 FSPDGKTLASTHGDHTVKIIDCQTGSC----LKVLHGHRRTPWVVRFHPLNPTIIASG-- 168
++PDG+ LAS D+ V + G L+ H+ V + P ++A+G
Sbjct: 238 WAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG 297
Query: 169 SLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGH-----KLYIWRY 219
+ D +R+WN + C+ + D + + SI + S + SGH +L IW+Y
Sbjct: 298 TSDRHIRIWNVCSGACLSAVDAHSQVCSILW--SPHYKELISGHGFAQNQLVIWKY 351
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 54/116 (46%), Gaps = 13/116 (11%)
Query: 115 FSPDGKTLASTHGDHTVKIIDCQTGSC----LKVLHGHRRTPWVVRFHPLNPTIIASG-- 168
++PDG+ LAS D+ V + G L+ H+ V + P ++A+G
Sbjct: 249 WAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG 308
Query: 169 SLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGH-----KLYIWRY 219
+ D +R+WN + C+ + D + + SI + S + SGH +L IW+Y
Sbjct: 309 TSDRHIRIWNVCSGACLSAVDAHSQVCSILW--SPHYKELISGHGFAQNQLVIWKY 362
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 115 FSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEV 174
FS G+ L + + D+T+ + D GS + +L GH +R P + T SGS DH +
Sbjct: 292 FSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSP-DGTAFCSGSWDHTL 350
Query: 175 RLW 177
R+W
Sbjct: 351 RVW 353
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/101 (21%), Positives = 45/101 (44%), Gaps = 2/101 (1%)
Query: 112 AAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNP-TIIASGSL 170
A +F+ + + GD T + D ++G L+ HGH + P SG
Sbjct: 159 ACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGC 218
Query: 171 DHEVRLWNASTAECIGSRDFYR-PIASIAFHASGELLAVAS 210
D + +W+ + +C+ + + + + S+ ++ SG+ A S
Sbjct: 219 DKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGS 259
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 54/116 (46%), Gaps = 13/116 (11%)
Query: 115 FSPDGKTLASTHGDHTVKIIDCQTGSC----LKVLHGHRRTPWVVRFHPLNPTIIASG-- 168
++PDG+ LAS D+ V + G L+ H+ V + P ++A+G
Sbjct: 158 WAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG 217
Query: 169 SLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGH-----KLYIWRY 219
+ D +R+WN + C+ + D + + SI + S + SGH +L IW+Y
Sbjct: 218 TSDRHIRIWNVCSGACLSAVDAHSQVCSILW--SPHYKELISGHGFAQNQLVIWKY 271
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 114 AFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHE 173
A S +G S DH++++ + Q G C GH + V F P N I+ SG D+
Sbjct: 74 ALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIV-SGGRDNA 132
Query: 174 VRLWNASTAECI 185
+R+WN EC+
Sbjct: 133 LRVWNVK-GECM 143
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 67/168 (39%), Gaps = 17/168 (10%)
Query: 57 RLLGETARKCSGSFS----QIFEAGRDARRGLASW-VEAESLHHL-RPKYCPLSPPPRST 110
+ LG T S +FS QI GRD L W V+ E +H L R + R
Sbjct: 104 KFLGHTKDVLSVAFSPDNRQIVSGGRD--NALRVWNVKGECMHTLSRGAHTDWVSCVR-- 159
Query: 111 IAAAFSP--DGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASG 168
FSP D + S D+ VK+ D TG + L GH V P + ++ AS
Sbjct: 160 ----FSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSP-DGSLCASS 214
Query: 169 SLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYI 216
D RLW+ + E + PI I F + + A+ + I
Sbjct: 215 DKDGVARLWDLTKGEALSEMAAGAPINQICFSPNRYWMCAATEKGIRI 262
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 1/98 (1%)
Query: 112 AAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLD 171
A A SPD K S D + + D + ++ GH + + T + +G LD
Sbjct: 146 ALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISN-DGTKLWTGGLD 204
Query: 172 HEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVA 209
+ VR W+ + DF I S+ + +GE LAV
Sbjct: 205 NTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVG 242
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 98 PKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRF 157
K L + ++ A+SPDGK LAS D + I D TG L L GH + F
Sbjct: 155 KKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTF 214
Query: 158 HPLNPTIIASGSLDHEVRLWNASTAECIGS 187
P + ++ + S D +++++ A G+
Sbjct: 215 SP-DSQLLVTASDDGYIKIYDVQHANLAGT 243
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 3/105 (2%)
Query: 115 FSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEV 174
FSPD + L + D +KI D Q + L GH V F P + T S S D V
Sbjct: 214 FSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCP-DDTHFVSSSSDKSV 272
Query: 175 RLWNASTAECIGS-RDFYRPIASIAFHASG-ELLAVASGHKLYIW 217
++W+ T C+ + D + + ++ +G ++++V +++I+
Sbjct: 273 KVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIY 317
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 45/111 (40%), Gaps = 2/111 (1%)
Query: 99 KYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFH 158
K L+ R ++ +G L S D + + G L L GH T W +
Sbjct: 24 KAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVD 83
Query: 159 PLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGE-LLAV 208
+ +GS D+ ++LW+ S +C+ + P+ + F G LA+
Sbjct: 84 CFTKYCV-TGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAI 133
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 114 AFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHE 173
A S + S+ D T+++ D +TG+ K GH+ + V F P N I+++G+ + E
Sbjct: 83 ALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGA-ERE 141
Query: 174 VRLWNASTAEC 184
++LWN EC
Sbjct: 142 IKLWNI-LGEC 151
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 76/187 (40%), Gaps = 13/187 (6%)
Query: 54 SSKRLLGETARKCSGSFS----QIFEAGRDARRGLASWVEAESLHHLRPKYCPLSPPPRS 109
S++R +G T S +FS QI A RD R + W +L + R
Sbjct: 464 STRRFVGHTKDVLSVAFSLDNRQIVSASRD--RTIKLW---NTLGECKYTISEGGEGHRD 518
Query: 110 TIAAA-FSPDG--KTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIA 166
++ FSP+ T+ S D TVK+ + L GH V P + ++ A
Sbjct: 519 WVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSP-DGSLCA 577
Query: 167 SGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETS 226
SG D V LW+ + + + S + I ++ F + L A+ H + IW +
Sbjct: 578 SGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVE 637
Query: 227 SPRIVLR 233
++ L+
Sbjct: 638 DLKVDLK 644
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Query: 108 RSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWV--VRFHP--LNPT 163
+ ++ AFS D + + S D T+K+ + G C + + WV VRF P NP
Sbjct: 129 KDVLSVAFSSDNRQIVSGSRDKTIKLWN-TLGVCKYTVQDESHSEWVSCVRFSPNSSNPI 187
Query: 164 IIASGSLDHEVRLWNASTAE 183
I++ G D V++WN + +
Sbjct: 188 IVSCG-WDKLVKVWNLANCK 206
Score = 37.4 bits (85), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 113 AAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDH 172
S DG+ S D T+++ D TG+ + GH + V F N I+ SGS D
Sbjct: 92 VVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIV-SGSRDK 150
Query: 173 EVRLWN 178
++LWN
Sbjct: 151 TIKLWN 156
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 119 GKTLASTHGDHTVKI--IDCQTGSCLKVLHGHRRTPWVVRF-HPLNPTIIASGSLDHEVR 175
GK LA+ D T+KI ++ +T + L GH W V + HP TI+AS S D +V
Sbjct: 21 GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 80
Query: 176 LW 177
+W
Sbjct: 81 IW 82
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Query: 108 RSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWV--VRFHP--LNPT 163
+ ++ AFS D + + S D T+K+ + G C + + WV VRF P NP
Sbjct: 106 KDVLSVAFSSDNRQIVSGSRDKTIKLWN-TLGVCKYTVQDESHSEWVSCVRFSPNSSNPI 164
Query: 164 IIASGSLDHEVRLWNASTAE 183
I++ G D V++WN + +
Sbjct: 165 IVSCG-WDKLVKVWNLANCK 183
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 113 AAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDH 172
S DG+ S D T+++ D TG+ + GH + V F N I+ SGS D
Sbjct: 69 VVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIV-SGSRDK 127
Query: 173 EVRLWN 178
++LWN
Sbjct: 128 TIKLWN 133
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 119 GKTLASTHGDHTVKI--IDCQTGSCLKVLHGHRRTPWVVRF-HPLNPTIIASGSLDHEVR 175
GK LA+ D T+KI ++ +T + L GH W V + HP TI+AS S D +V
Sbjct: 23 GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 82
Query: 176 LW 177
+W
Sbjct: 83 IW 84
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 49/111 (44%), Gaps = 5/111 (4%)
Query: 114 AFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASG--SLD 171
A+ DG LAS D+ V+I D ++ H V + P ++A+G ++D
Sbjct: 224 AWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMD 283
Query: 172 HEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG---HKLYIWRY 219
++ WNA+T + + D + S+ + + + G + L IW Y
Sbjct: 284 KQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSY 334
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 119 GKTLASTHGDHTVKIIDCQTGSCLKV--LHGHRRTPWVVRF-HPLNPTIIASGSLDHEVR 175
G LA+ D +VKI D + G + + L GH W V + HP+ I+AS S D +V
Sbjct: 25 GTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVI 84
Query: 176 LW 177
+W
Sbjct: 85 IW 86
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 119 GKTLASTHGDHTVKI--IDCQTGSCLKVLHGHRRTPWVVRF-HPLNPTIIASGSLDHEVR 175
GK LA+ D T+KI ++ +T + L GH W V + HP TI+AS S D +V
Sbjct: 21 GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 80
Query: 176 LW 177
+W
Sbjct: 81 IW 82
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 119 GKTLASTHGDHTVKI--IDCQTGSCLKVLHGHRRTPWVVRF-HPLNPTIIASGSLDHEVR 175
GK +A+ D T+KI ++ +T + L GH W V + HP TI+AS S D +V
Sbjct: 21 GKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVM 80
Query: 176 LW 177
+W
Sbjct: 81 IW 82
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 115 FSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEV 174
F P G+ L S+ D +KI + GS + L GHR T + ++ S SLD +
Sbjct: 144 FFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVL-SASLDGTI 202
Query: 175 RLWNASTAECI 185
RLW T I
Sbjct: 203 RLWECGTGTTI 213
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 115 FSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEV 174
F P G+ L S+ D +KI + GS + L GHR T + ++ S SLD +
Sbjct: 147 FFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVL-SASLDGTI 205
Query: 175 RLWNASTAECI 185
RLW T I
Sbjct: 206 RLWECGTGTTI 216
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 37.0 bits (84), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 30/149 (20%), Positives = 61/149 (40%), Gaps = 15/149 (10%)
Query: 91 ESLHHLRPKYCPLSPPPRST-------IAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLK 143
E++ L+ Y P P R+T + + + + D +++ D L
Sbjct: 97 ENIFILKNWYNPKFVPQRTTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLL 156
Query: 144 VLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECI----GSRDFYRPIASIAF 199
L GH W +++ + I+ SGS D VR+W+ C G R + + +
Sbjct: 157 QLSGHDGGVWALKY--AHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEY 214
Query: 200 HASGELLAVASGHKLYIWRYNMREETSSP 228
++ + + L++W+ + +E+S P
Sbjct: 215 KNIKYIVTGSRDNTLHVWK--LPKESSVP 241
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
Query: 116 SPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGH-RRTPWVVRFHPLNPTIIASGSLDHEV 174
S G + S D+T+ + D CL +L GH R + H I S S+D +
Sbjct: 277 SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCI--SASMDTTI 334
Query: 175 RLWNASTAECI 185
R+W+ E +
Sbjct: 335 RIWDLENGELM 345
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 37.0 bits (84), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 30/149 (20%), Positives = 61/149 (40%), Gaps = 15/149 (10%)
Query: 91 ESLHHLRPKYCPLSPPPRST-------IAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLK 143
E++ L+ Y P P R+T + + + + D +++ D L
Sbjct: 97 ENIFILKNWYNPKFVPQRTTLRGHXTSVITCLQFEDNYVITGADDKXIRVYDSINKKFLL 156
Query: 144 VLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECI----GSRDFYRPIASIAF 199
L GH W +++ + I+ SGS D VR+W+ C G R + + +
Sbjct: 157 QLSGHDGGVWALKY--AHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEY 214
Query: 200 HASGELLAVASGHKLYIWRYNMREETSSP 228
++ + + L++W+ + +E+S P
Sbjct: 215 KNIKYIVTGSRDNTLHVWK--LPKESSVP 241
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 4/99 (4%)
Query: 111 IAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSL 170
++ + +PD + S D + K+ D + G C + GH + F P N A+GS
Sbjct: 199 MSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP-NGNAFATGSD 257
Query: 171 DHEVRLWNASTAECIGS---RDFYRPIASIAFHASGELL 206
D RL++ + + + + I S++F SG LL
Sbjct: 258 DATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 296
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 36.6 bits (83), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 4/99 (4%)
Query: 111 IAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSL 170
++ + +PD + S D + K+ D + G C + GH + F P N A+GS
Sbjct: 188 MSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP-NGNAFATGSD 246
Query: 171 DHEVRLWNASTAECIGS---RDFYRPIASIAFHASGELL 206
D RL++ + + + + I S++F SG LL
Sbjct: 247 DATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 285
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 36.6 bits (83), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 4/99 (4%)
Query: 111 IAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSL 170
++ + +PD + S D + K+ D + G C + GH + F P N A+GS
Sbjct: 188 MSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP-NGNAFATGSD 246
Query: 171 DHEVRLWNASTAECIGS---RDFYRPIASIAFHASGELL 206
D RL++ + + + + I S++F SG LL
Sbjct: 247 DATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 285
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 36.6 bits (83), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 4/99 (4%)
Query: 111 IAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSL 170
++ + +PD + S D + K+ D + G C + GH + F P N A+GS
Sbjct: 188 MSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP-NGNAFATGSD 246
Query: 171 DHEVRLWNASTAECIGS---RDFYRPIASIAFHASGELL 206
D RL++ + + + + I S++F SG LL
Sbjct: 247 DATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 285
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 36.6 bits (83), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 4/99 (4%)
Query: 111 IAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSL 170
++ + +PD + S D + K+ D + G C + GH + F P N A+GS
Sbjct: 188 MSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP-NGNAFATGSD 246
Query: 171 DHEVRLWNASTAECIGS---RDFYRPIASIAFHASGELL 206
D RL++ + + + + I S++F SG LL
Sbjct: 247 DATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 285
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 36.2 bits (82), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 119 GKTLASTHGDHTVKI--IDCQTGSCLKVLHGHRRTPWVVRF-HPLNPTIIASGSLDHEVR 175
GK A+ D T+KI ++ +T + L GH W V + HP TI+AS S D +V
Sbjct: 21 GKRXATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVX 80
Query: 176 LW 177
+W
Sbjct: 81 IW 82
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 115 FSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH-------GHRRTPWVVRFHPLNPTIIAS 167
++PDG AST GD T+ + + G+ V H + + + + P + T IAS
Sbjct: 198 YNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP-DGTKIAS 256
Query: 168 GSLDHEVRLWNASTAEC 184
S D +++WN +T +
Sbjct: 257 ASADKTIKIWNVATLKV 273
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 117 PDGKTLASTHG-DHTVKIIDCQTGSC-LKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEV 174
P+ + + +T G D + I D + G+ + +L H W V FHP NP + + S D +
Sbjct: 246 PNQQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSL 305
Query: 175 RLWNAST 181
W+AST
Sbjct: 306 WHWDAST 312
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
Query: 115 FSPDGKT-LASTHGDHTVKIIDCQTGSCLKVL-----HGHRRTPWVVRFHPLNPTIIASG 168
+ PD +T L + GD T + D TG + + GH + + LN + SG
Sbjct: 165 YVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISG 224
Query: 169 SLDHEVRLWN 178
S D VRLW+
Sbjct: 225 SCDTTVRLWD 234
Score = 33.1 bits (74), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 54/120 (45%), Gaps = 14/120 (11%)
Query: 73 IFEAGRDARRGLASWVEAESLHHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVK 132
I A +D R + + + ++ H ++ +CP + AF+P+G+++A D
Sbjct: 81 IVSASQDGRLIVWNALTSQKTHAIKL-HCPW------VMECAFAPNGQSVACGGLDSACS 133
Query: 133 IIDCQTGS-------CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECI 185
I + + + +VL GH+ ++ P T + +GS D LW+ +T + I
Sbjct: 134 IFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRI 193
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
Query: 114 AFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHE 173
A DG ++ ++ D +K++D TG L+ GH + ++ P N I++ G D
Sbjct: 191 AVVDDGHFISCSN-DGLIKLVDXHTGDVLRTYEGHESFVYCIKLLP-NGDIVSCGE-DRT 247
Query: 174 VRLW---NASTAECI 185
VR+W N S + I
Sbjct: 248 VRIWSKENGSLKQVI 262
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 115 FSPDGKTLASTHGDHTVKIIDC--QTGSCLKVLHGHRRTPWVVRFHPLNPTI-IASGSLD 171
+ P LAS+ D TV+I C+ VL+GH T W F + SGS D
Sbjct: 161 WHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDD 220
Query: 172 HEVRLWN 178
VR+W
Sbjct: 221 STVRVWK 227
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 33.1 bits (74), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 10/120 (8%)
Query: 145 LHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLW--NASTAE--CIGSRDFYR----PIAS 196
L GH++ + + ++P + S S DH + LW NA+ E I +++ + +
Sbjct: 179 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 238
Query: 197 IAFHASGELL--AVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA 254
+A+H E L +VA KL IW + V + + F+P++ +L T
Sbjct: 239 VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATG 298
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 122 LASTHGDHTVKIIDCQTGSC-LKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAS 180
LA+ D TV + D + L H+ + V++ P N TI+AS D + +W+ S
Sbjct: 295 LATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 354
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 33.1 bits (74), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 10/120 (8%)
Query: 145 LHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLW--NASTAE--CIGSRDFYR----PIAS 196
L GH++ + + ++P + S S DH + LW NA+ E I +++ + +
Sbjct: 181 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 240
Query: 197 IAFHASGELL--AVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA 254
+A+H E L +VA KL IW + V + + F+P++ +L T
Sbjct: 241 VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATG 300
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 122 LASTHGDHTVKIIDCQTGSC-LKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAS 180
LA+ D TV + D + L H+ + V++ P N TI+AS D + +W+ S
Sbjct: 297 LATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 356
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 10/120 (8%)
Query: 145 LHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLW--NASTAE--CIGSRDFYR----PIAS 196
L GH++ + + ++P + S S DH + LW NA+ E I +++ + +
Sbjct: 177 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 236
Query: 197 IAFHASGELL--AVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA 254
+A+H E L +VA KL IW + V + + F+P++ +L T
Sbjct: 237 VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATG 296
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 122 LASTHGDHTVKIIDCQTGSC-LKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAS 180
LA+ D TV + D + L H+ + V++ P N TI+AS D + +W+ S
Sbjct: 293 LATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 352
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 69/174 (39%), Gaps = 20/174 (11%)
Query: 97 RPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSC---LKVLHGHRRTPW 153
R +Y P +P I A +P L + H K +G C L+ L GH++ +
Sbjct: 129 RARYMPQNP----CIIATKTPSSDVLVFDYTKHPSK--PDPSGECNPDLR-LRGHQKEGY 181
Query: 154 VVRFHPLNPTIIASGSLDHEVRLWNAST----AECIGSRDFYRPIASIAFHASGELL--- 206
+ ++P + S S DH + LW+ S + + ++ + ++ S LL
Sbjct: 182 GLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHES 241
Query: 207 ---AVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVN 257
+VA KL IW + V + + F+P++ +L T +
Sbjct: 242 LFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSAD 295
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 122 LASTHGDHTVKIIDCQTGSC-LKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAS 180
LA+ D TV + D + L H+ + V++ P N TI+AS D + +W+ S
Sbjct: 289 LATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLS 348
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Query: 115 FSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEV 174
+ DG S D T+++ D TG + GH+ V ++I SGS D +
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK-KASMIISGSRDKTI 131
Query: 175 RLWNASTAECIGS 187
++W +C+ +
Sbjct: 132 KVWTIK-GQCLAT 143
Score = 29.6 bits (65), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 3/100 (3%)
Query: 118 DGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLW 177
D T+ S D VK + GH + P + T+IAS D E+ LW
Sbjct: 165 DSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP-DGTLIASAGKDGEIMLW 223
Query: 178 NASTAECIGSRDFYRPIASIAFHASGELL--AVASGHKLY 215
N + + + + + S+AF + L A A+G K++
Sbjct: 224 NLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVF 263
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Query: 115 FSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEV 174
+ DG S D T+++ D TG + GH+ V ++I SGS D +
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK-KASMIISGSRDKTI 131
Query: 175 RLWNASTAECIGS 187
++W +C+ +
Sbjct: 132 KVWTIK-GQCLAT 143
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 3/100 (3%)
Query: 118 DGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLW 177
D T+ S D VK + GH + P + T+IAS D E+ LW
Sbjct: 165 DSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP-DGTLIASAGKDGEIMLW 223
Query: 178 NASTAECIGSRDFYRPIASIAFHASGELL--AVASGHKLY 215
N + + + + + S+AF + L A A+G K++
Sbjct: 224 NLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVF 263
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Query: 115 FSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEV 174
+ DG S D T+++ D TG + GH+ V ++I SGS D +
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK-KASMIISGSRDKTI 131
Query: 175 RLWNASTAECIGS 187
++W +C+ +
Sbjct: 132 KVWTIK-GQCLAT 143
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 3/100 (3%)
Query: 118 DGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLW 177
D T+ S D VK + GH + P + T+IAS D E+ LW
Sbjct: 165 DSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP-DGTLIASAGKDGEIMLW 223
Query: 178 NASTAECIGSRDFYRPIASIAFHASGELL--AVASGHKLY 215
N + + + + + S+AF + L A A+G K++
Sbjct: 224 NLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVF 263
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Query: 115 FSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEV 174
+ DG S D T+++ D TG + GH+ V ++I SGS D +
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK-KASMIISGSRDKTI 131
Query: 175 RLWNASTAECIGS 187
++W +C+ +
Sbjct: 132 KVWTIK-GQCLAT 143
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 3/100 (3%)
Query: 118 DGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLW 177
D T+ S D VK + GH + P + T+IAS D E+ LW
Sbjct: 165 DSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP-DGTLIASAGKDGEIMLW 223
Query: 178 NASTAECIGSRDFYRPIASIAFHASGELL--AVASGHKLY 215
N + + + + + S+AF + L A A+G K++
Sbjct: 224 NLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVF 263
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Query: 115 FSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEV 174
+ DG S D T+++ D TG + GH+ V ++I SGS D +
Sbjct: 67 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK-KASMIISGSRDKTI 125
Query: 175 RLWNASTAECIGS 187
++W +C+ +
Sbjct: 126 KVWTIK-GQCLAT 137
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 3/100 (3%)
Query: 118 DGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLW 177
D T+ S D VK + GH + P + T+IAS D E+ LW
Sbjct: 159 DSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP-DGTLIASAGKDGEIMLW 217
Query: 178 NASTAECIGSRDFYRPIASIAFHASGELL--AVASGHKLY 215
N + + + + + S+AF + L A A+G K++
Sbjct: 218 NLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVF 257
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 57/128 (44%), Gaps = 23/128 (17%)
Query: 154 VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRP------------IASIAFHA 201
V+F+ ++ASG + E+ +W+ + +C S Y P + S+A++
Sbjct: 118 TVKFNAKQDNVLASGGNNGEIFIWDMN--KCTESPSNYTPLTPGQSMSSVDEVISLAWNQ 175
Query: 202 SGELLAVASGHKLY--IWRYNMREET-----SSPRIVLRTRRSLRAVHFHPHAAPLLLTA 254
S + ++G + IW ++E +SP + ++ L V +HP + + TA
Sbjct: 176 SLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGI--KQQLSVVEWHPKNSTRVATA 233
Query: 255 EVNDLDSS 262
+D D S
Sbjct: 234 TGSDNDPS 241
>pdb|3DW8|B Chain B, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
pdb|3DW8|E Chain E, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
Length = 447
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 7/61 (11%)
Query: 683 EITVPTYTILEVYRVSDMELVRVLPSAEDEVNVACFHPSVGGGLVYGTKEGKLRILQFDG 742
EIT ++ I+++ + EL V+ +AE FHP+ VY + +G +R+
Sbjct: 206 EITDRSFNIVDIKPANMEELTEVITAAE-------FHPNSCNTFVYSSSKGTIRLCDMRA 258
Query: 743 S 743
S
Sbjct: 259 S 259
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 39/96 (40%), Gaps = 8/96 (8%)
Query: 122 LASTHGDHTVKIIDCQTGSC-LKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAS 180
LA+ D TV + D + L H+ + V + P N TI+AS D + +W+ S
Sbjct: 291 LATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLS 350
Query: 181 TAECIGSRDFYRPIASIAFHASGELLAVASGHKLYI 216
IG A A ELL + GH I
Sbjct: 351 K---IGEEQ----SAEDAEDGPPELLFIHGGHTAKI 379
Score = 29.3 bits (64), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 71/174 (40%), Gaps = 20/174 (11%)
Query: 97 RPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSC---LKVLHGHRRTPW 153
R +Y P +P I A +P L + H K +G C L+ L GH++ +
Sbjct: 131 RARYMPQNP----HIIATKTPSSDVLVFDYTKHPAK--PDPSGECNPDLR-LRGHQKEGY 183
Query: 154 VVRFHPLNPTIIASGSLDHEVRLWNASTA----ECIGSRDFYR----PIASIAFHASGEL 205
+ ++ + S S DH V LW+ + + + ++ + + +A+H E
Sbjct: 184 GLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHES 243
Query: 206 L--AVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVN 257
L +VA KL IW + +V + + F+P++ +L T +
Sbjct: 244 LFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSAD 297
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 39/96 (40%), Gaps = 8/96 (8%)
Query: 122 LASTHGDHTVKIIDCQTGSC-LKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAS 180
LA+ D TV + D + L H+ + V + P N TI+AS D + +W+ S
Sbjct: 291 LATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLS 350
Query: 181 TAECIGSRDFYRPIASIAFHASGELLAVASGHKLYI 216
IG A A ELL + GH I
Sbjct: 351 K---IGEEQ----SAEDAEDGPPELLFIHGGHTAKI 379
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 55/128 (42%), Gaps = 24/128 (18%)
Query: 112 AAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL--HGHRR----TPWVVRFHPLNPTII 165
AA FSPDG L +T +++ C L H HR TP +HP I+
Sbjct: 301 AACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIV 360
Query: 166 ASGSLD--------HEVR---LWNASTAECIGSRDFYRP----IASI-AFHASGELLAVA 209
D +E+R +++ ++ + + Y P I+S+ F+ G+ LA A
Sbjct: 361 VGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQ--LYDPESSGISSLNEFNPMGDTLASA 418
Query: 210 SGHKLYIW 217
G+ + IW
Sbjct: 419 MGYHILIW 426
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 55/128 (42%), Gaps = 24/128 (18%)
Query: 112 AAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL--HGHRR----TPWVVRFHPLNPTII 165
AA FSPDG L +T +++ C L H HR TP +HP I+
Sbjct: 301 AACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIV 360
Query: 166 ASGSLD--------HEVR---LWNASTAECIGSRDFYRP----IASI-AFHASGELLAVA 209
D +E+R +++ ++ + + Y P I+S+ F+ G+ LA A
Sbjct: 361 VGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQ--LYDPESSGISSLNEFNPMGDTLASA 418
Query: 210 SGHKLYIW 217
G+ + IW
Sbjct: 419 MGYHILIW 426
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 55/128 (42%), Gaps = 24/128 (18%)
Query: 112 AAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL--HGHRR----TPWVVRFHPLNPTII 165
AA FSPDG L +T +++ C L H HR TP +HP I+
Sbjct: 302 AACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIV 361
Query: 166 ASGSLD--------HEVR---LWNASTAECIGSRDFYRP----IASI-AFHASGELLAVA 209
D +E+R +++ ++ + + Y P I+S+ F+ G+ LA A
Sbjct: 362 VGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQ--LYDPESSGISSLNEFNPMGDTLASA 419
Query: 210 SGHKLYIW 217
G+ + IW
Sbjct: 420 MGYHILIW 427
>pdb|2E66|A Chain A, Crystal Structure Of Cuta1 From Pyrococcus Horikoshii Ot3,
Mutation D60a
pdb|2E66|B Chain B, Crystal Structure Of Cuta1 From Pyrococcus Horikoshii Ot3,
Mutation D60a
pdb|2E66|C Chain C, Crystal Structure Of Cuta1 From Pyrococcus Horikoshii Ot3,
Mutation D60a
Length = 102
Score = 29.3 bits (64), Expect = 8.4, Method: Composition-based stats.
Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
Query: 212 HKLYIWRYNMREETSSPRIVLRTRRSL------RAVHFHPHAAPLLLTAEVNDLD 260
H+ + W EE +L+TR +L R HP+ P ++ +V+D++
Sbjct: 35 HRAFYWWEGKIEEDKEVGAILKTREALWEELKERIKELHPYDVPAIIRIDVDDVN 89
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,068,932
Number of Sequences: 62578
Number of extensions: 869797
Number of successful extensions: 2017
Number of sequences better than 100.0: 90
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 1571
Number of HSP's gapped (non-prelim): 287
length of query: 767
length of database: 14,973,337
effective HSP length: 106
effective length of query: 661
effective length of database: 8,340,069
effective search space: 5512785609
effective search space used: 5512785609
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)