Query 004217
Match_columns 767
No_of_seqs 530 out of 3555
Neff 6.0
Searched_HMMs 46136
Date Thu Mar 28 19:34:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004217.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004217hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0303 Actin-binding protein 100.0 1.1E-32 2.3E-37 293.1 19.6 310 28-398 4-322 (472)
2 KOG0272 U4/U6 small nuclear ri 99.9 2.4E-26 5.2E-31 246.6 18.0 196 72-274 220-429 (459)
3 KOG0272 U4/U6 small nuclear ri 99.9 4E-26 8.7E-31 244.9 18.9 200 70-276 176-388 (459)
4 KOG0271 Notchless-like WD40 re 99.9 1.3E-25 2.9E-30 238.3 19.6 261 71-363 117-411 (480)
5 PTZ00421 coronin; Provisional 99.9 5.6E-24 1.2E-28 243.4 33.7 283 32-358 3-298 (493)
6 KOG0271 Notchless-like WD40 re 99.9 8.3E-25 1.8E-29 232.3 22.0 264 48-323 131-471 (480)
7 PTZ00420 coronin; Provisional 99.9 6.1E-24 1.3E-28 245.3 29.3 212 32-255 4-234 (568)
8 KOG0263 Transcription initiati 99.9 1.6E-24 3.5E-29 246.8 21.1 186 72-261 454-650 (707)
9 KOG0263 Transcription initiati 99.9 1.5E-24 3.3E-29 247.0 20.3 236 68-355 377-654 (707)
10 KOG0279 G protein beta subunit 99.9 1.9E-23 4E-28 215.3 25.1 242 79-324 26-304 (315)
11 KOG0279 G protein beta subunit 99.9 1.7E-23 3.6E-28 215.6 22.7 228 75-307 69-310 (315)
12 KOG0266 WD40 repeat-containing 99.9 1.4E-22 3E-27 230.4 28.9 193 70-264 160-368 (456)
13 KOG0284 Polyadenylation factor 99.9 4.6E-23 1E-27 220.7 18.9 199 53-255 117-326 (464)
14 KOG0286 G-protein beta subunit 99.9 5.8E-22 1.3E-26 205.3 23.9 226 72-307 100-342 (343)
15 KOG0315 G-protein beta subunit 99.9 1.1E-21 2.3E-26 199.7 24.0 256 53-358 19-296 (311)
16 KOG0291 WD40-repeat-containing 99.9 1.1E-21 2.4E-26 222.0 26.4 241 72-359 310-559 (893)
17 KOG0285 Pleiotropic regulator 99.9 1.7E-21 3.7E-26 205.8 21.2 247 72-323 154-429 (460)
18 KOG0265 U5 snRNP-specific prot 99.9 2.9E-21 6.3E-26 200.8 22.5 201 72-275 50-262 (338)
19 KOG0286 G-protein beta subunit 99.9 7.7E-21 1.7E-25 197.0 22.4 171 74-249 150-329 (343)
20 KOG0310 Conserved WD40 repeat- 99.9 1.3E-20 2.7E-25 205.9 24.5 220 72-320 71-296 (487)
21 KOG0266 WD40 repeat-containing 99.9 2.8E-20 6E-25 211.6 27.4 182 70-255 204-399 (456)
22 cd00200 WD40 WD40 domain, foun 99.9 2.3E-19 4.9E-24 180.3 30.6 188 72-263 12-210 (289)
23 KOG0291 WD40-repeat-containing 99.9 6.9E-20 1.5E-24 207.6 27.2 256 70-358 351-620 (893)
24 KOG0292 Vesicle coat complex C 99.9 6.9E-20 1.5E-24 209.8 25.7 352 55-409 32-451 (1202)
25 KOG0315 G-protein beta subunit 99.9 6.3E-20 1.4E-24 186.8 22.1 178 80-261 9-198 (311)
26 KOG0273 Beta-transducin family 99.8 2.6E-19 5.5E-24 194.9 27.3 250 71-359 237-491 (524)
27 KOG0295 WD40 repeat-containing 99.8 2.4E-20 5.2E-25 197.8 18.6 195 72-270 153-374 (406)
28 KOG0295 WD40 repeat-containing 99.8 5.8E-20 1.2E-24 194.9 19.5 181 71-255 195-395 (406)
29 PLN00181 protein SPA1-RELATED; 99.8 1.4E-18 3E-23 210.1 33.9 187 71-260 485-690 (793)
30 KOG0283 WD40 repeat-containing 99.8 2E-19 4.2E-24 207.0 24.2 188 70-260 268-527 (712)
31 KOG0318 WD40 repeat stress pro 99.8 6.7E-18 1.5E-22 185.8 34.9 265 72-358 62-358 (603)
32 KOG0281 Beta-TrCP (transducin 99.8 1.7E-20 3.6E-25 197.6 13.6 258 72-365 200-492 (499)
33 PTZ00421 coronin; Provisional 99.8 1.7E-18 3.6E-23 198.5 29.9 187 72-261 78-291 (493)
34 KOG0284 Polyadenylation factor 99.8 1.3E-20 2.8E-25 202.0 11.5 184 72-260 99-294 (464)
35 KOG1446 Histone H3 (Lys4) meth 99.8 4.8E-18 1E-22 178.1 30.1 246 72-361 17-273 (311)
36 KOG0285 Pleiotropic regulator 99.8 2.5E-19 5.5E-24 189.5 20.6 213 53-270 172-399 (460)
37 KOG0273 Beta-transducin family 99.8 3.4E-19 7.4E-24 193.9 21.6 180 72-255 279-513 (524)
38 KOG0319 WD40-repeat-containing 99.8 1.3E-19 2.9E-24 205.3 18.4 180 72-255 414-609 (775)
39 KOG0277 Peroxisomal targeting 99.8 1.7E-19 3.7E-24 184.1 16.8 185 78-264 70-269 (311)
40 KOG0282 mRNA splicing factor [ 99.8 5.7E-20 1.2E-24 200.5 14.1 236 102-358 209-470 (503)
41 KOG0645 WD40 repeat protein [G 99.8 2.3E-18 4.9E-23 177.3 22.8 183 72-255 17-215 (312)
42 KOG0292 Vesicle coat complex C 99.8 1.1E-18 2.4E-23 200.2 22.1 205 73-279 13-254 (1202)
43 cd00200 WD40 WD40 domain, foun 99.8 4.6E-18 1E-22 170.8 23.9 180 72-255 96-281 (289)
44 KOG0772 Uncharacterized conser 99.8 1.9E-18 4.1E-23 189.5 22.1 248 72-358 170-453 (641)
45 KOG0313 Microtubule binding pr 99.8 2.3E-18 4.9E-23 183.7 21.7 191 80-274 158-388 (423)
46 KOG0276 Vesicle coat complex C 99.8 2E-18 4.4E-23 192.5 21.9 182 75-259 61-251 (794)
47 KOG0316 Conserved WD40 repeat- 99.8 1.5E-18 3.3E-23 175.6 18.7 197 72-276 20-226 (307)
48 KOG0319 WD40-repeat-containing 99.8 1.2E-18 2.7E-23 197.5 19.3 192 77-272 373-589 (775)
49 PLN00181 protein SPA1-RELATED; 99.8 2.4E-17 5.1E-22 199.5 31.1 175 79-255 543-728 (793)
50 KOG0973 Histone transcription 99.8 5.7E-18 1.2E-22 199.1 23.6 182 72-254 16-238 (942)
51 KOG0275 Conserved WD40 repeat- 99.8 1.2E-18 2.6E-23 182.2 14.9 182 71-254 215-411 (508)
52 KOG0282 mRNA splicing factor [ 99.8 6.7E-19 1.5E-23 192.2 12.6 224 78-307 224-459 (503)
53 KOG0645 WD40 repeat protein [G 99.8 2.5E-17 5.5E-22 169.7 23.0 152 102-255 9-169 (312)
54 KOG0318 WD40 repeat stress pro 99.8 4.6E-17 1E-21 179.3 25.9 227 72-307 193-557 (603)
55 KOG0274 Cdc4 and related F-box 99.8 2.7E-17 5.9E-22 189.6 25.4 247 81-358 218-490 (537)
56 KOG0639 Transducin-like enhanc 99.8 3.1E-18 6.8E-23 187.0 16.1 222 72-325 468-696 (705)
57 KOG0296 Angio-associated migra 99.8 7.5E-17 1.6E-21 171.5 25.8 251 72-326 67-391 (399)
58 KOG0281 Beta-TrCP (transducin 99.8 1.3E-18 2.9E-23 183.4 12.4 221 30-264 192-432 (499)
59 KOG0283 WD40 repeat-containing 99.8 2.3E-18 4.9E-23 198.3 13.4 147 102-254 261-470 (712)
60 KOG0305 Anaphase promoting com 99.8 4.5E-17 9.7E-22 183.2 22.7 220 70-320 218-448 (484)
61 KOG0264 Nucleosome remodeling 99.8 1.1E-17 2.4E-22 181.8 16.2 178 78-255 187-393 (422)
62 PTZ00420 coronin; Provisional 99.8 1.4E-16 3.1E-21 184.4 26.1 182 71-255 76-283 (568)
63 KOG0640 mRNA cleavage stimulat 99.7 2.9E-17 6.3E-22 171.5 17.8 244 72-320 115-413 (430)
64 KOG0265 U5 snRNP-specific prot 99.7 7.5E-17 1.6E-21 168.1 20.1 167 102-276 42-217 (338)
65 KOG0269 WD40 repeat-containing 99.7 8.5E-18 1.8E-22 191.5 13.5 182 79-262 98-298 (839)
66 KOG0288 WD40 repeat protein Ti 99.7 9.5E-18 2.1E-22 180.5 13.0 238 75-359 181-426 (459)
67 KOG0302 Ribosome Assembly prot 99.7 3.2E-17 7E-22 174.8 15.9 183 79-261 163-379 (440)
68 KOG1407 WD40 repeat protein [F 99.7 5.1E-16 1.1E-20 159.4 23.4 188 73-265 24-224 (313)
69 KOG0276 Vesicle coat complex C 99.7 4.3E-17 9.3E-22 182.1 16.5 180 72-254 100-288 (794)
70 KOG0305 Anaphase promoting com 99.7 1.1E-16 2.4E-21 180.1 20.0 179 80-261 269-457 (484)
71 KOG0294 WD40 repeat-containing 99.7 3.8E-16 8.1E-21 163.8 22.4 182 72-261 46-238 (362)
72 KOG0306 WD40-repeat-containing 99.7 2.7E-16 5.9E-21 178.7 22.9 245 54-307 394-661 (888)
73 TIGR03866 PQQ_ABC_repeats PQQ- 99.7 3.6E-15 7.8E-20 155.4 29.3 250 82-358 2-287 (300)
74 KOG1407 WD40 repeat protein [F 99.7 1E-16 2.2E-21 164.5 17.1 217 101-366 14-236 (313)
75 KOG0306 WD40-repeat-containing 99.7 8.1E-17 1.8E-21 182.9 17.2 188 73-264 458-663 (888)
76 KOG0289 mRNA splicing factor [ 99.7 3.5E-16 7.5E-21 169.3 20.2 193 72-268 222-427 (506)
77 KOG0264 Nucleosome remodeling 99.7 3.6E-16 7.8E-21 170.2 20.5 184 79-264 135-351 (422)
78 KOG0643 Translation initiation 99.7 8.9E-16 1.9E-20 158.1 22.3 224 72-331 13-259 (327)
79 KOG0267 Microtubule severing p 99.7 1.6E-17 3.6E-22 188.0 9.5 192 58-255 18-215 (825)
80 KOG0647 mRNA export protein (c 99.7 1.8E-15 3.9E-20 158.0 23.6 220 72-320 30-310 (347)
81 KOG1445 Tumor-specific antigen 99.7 2E-16 4.2E-21 176.5 17.5 254 88-398 600-872 (1012)
82 KOG0278 Serine/threonine kinas 99.7 7.4E-17 1.6E-21 164.6 12.9 197 54-255 81-287 (334)
83 KOG0293 WD40 repeat-containing 99.7 5.1E-16 1.1E-20 167.1 19.5 188 71-263 226-428 (519)
84 KOG0289 mRNA splicing factor [ 99.7 7.5E-16 1.6E-20 166.7 20.7 180 73-255 265-452 (506)
85 KOG0308 Conserved WD40 repeat- 99.7 7.1E-17 1.5E-21 181.2 13.1 189 79-271 35-254 (735)
86 KOG0640 mRNA cleavage stimulat 99.7 1.2E-16 2.5E-21 167.0 13.5 166 102-268 107-299 (430)
87 KOG0278 Serine/threonine kinas 99.7 6E-17 1.3E-21 165.2 10.6 230 77-358 67-305 (334)
88 KOG0275 Conserved WD40 repeat- 99.7 2.4E-17 5.1E-22 172.6 7.7 163 105-271 211-389 (508)
89 KOG0277 Peroxisomal targeting 99.7 2.6E-16 5.7E-21 161.0 13.3 175 79-255 115-298 (311)
90 KOG0973 Histone transcription 99.7 1.7E-15 3.7E-20 178.5 21.6 174 68-245 68-275 (942)
91 KOG0316 Conserved WD40 repeat- 99.7 8.9E-16 1.9E-20 155.7 16.6 149 102-255 12-162 (307)
92 KOG0643 Translation initiation 99.7 6.4E-15 1.4E-19 151.8 22.8 153 102-255 5-167 (327)
93 KOG0274 Cdc4 and related F-box 99.7 1.6E-15 3.5E-20 175.0 20.6 189 72-271 252-452 (537)
94 KOG0267 Microtubule severing p 99.7 6.1E-17 1.3E-21 183.4 8.6 181 70-254 71-257 (825)
95 KOG0641 WD40 repeat protein [G 99.7 1.2E-14 2.6E-19 146.7 24.0 179 71-255 91-293 (350)
96 KOG0646 WD40 repeat protein [G 99.7 1.3E-15 2.8E-20 166.3 18.4 202 72-273 84-320 (476)
97 KOG0299 U3 snoRNP-associated p 99.7 3.9E-15 8.5E-20 162.3 21.9 193 70-268 143-364 (479)
98 KOG0296 Angio-associated migra 99.7 9.1E-15 2E-19 155.8 23.9 164 102-269 59-229 (399)
99 KOG0302 Ribosome Assembly prot 99.7 5E-16 1.1E-20 165.8 14.4 174 80-255 223-428 (440)
100 KOG0313 Microtubule binding pr 99.7 1.6E-15 3.5E-20 162.1 17.8 184 71-260 195-413 (423)
101 KOG0269 WD40 repeat-containing 99.7 4.9E-16 1.1E-20 177.3 14.2 174 79-255 144-329 (839)
102 KOG0310 Conserved WD40 repeat- 99.7 2.3E-15 4.9E-20 165.1 17.8 172 90-264 47-229 (487)
103 KOG1332 Vesicle coat complex C 99.7 4.8E-15 1E-19 151.2 18.2 167 80-247 22-219 (299)
104 KOG0270 WD40 repeat-containing 99.6 3.7E-15 8.1E-20 161.9 17.5 174 80-255 191-393 (463)
105 KOG0288 WD40 repeat protein Ti 99.6 3.7E-15 8E-20 160.7 16.7 190 72-265 222-422 (459)
106 KOG2096 WD40 repeat protein [G 99.6 1.2E-14 2.6E-19 152.7 19.7 252 69-358 86-368 (420)
107 KOG2096 WD40 repeat protein [G 99.6 1.1E-14 2.4E-19 152.8 18.0 213 36-255 157-393 (420)
108 KOG0293 WD40 repeat-containing 99.6 1.9E-14 4E-19 155.2 19.9 149 102-255 219-374 (519)
109 KOG0268 Sof1-like rRNA process 99.6 2.4E-15 5.3E-20 160.0 12.6 243 74-362 71-357 (433)
110 KOG0300 WD40 repeat-containing 99.6 5.5E-15 1.2E-19 154.7 14.6 186 75-264 154-390 (481)
111 KOG0308 Conserved WD40 repeat- 99.6 9.4E-15 2E-19 164.4 16.6 174 78-255 82-275 (735)
112 KOG1274 WD40 repeat protein [G 99.6 3E-14 6.5E-19 165.4 20.0 188 72-261 57-263 (933)
113 KOG0772 Uncharacterized conser 99.6 1.4E-14 3E-19 159.5 16.3 183 72-255 217-429 (641)
114 KOG0321 WD40 repeat-containing 99.6 3.7E-14 8E-19 159.4 19.3 322 72-405 55-444 (720)
115 KOG1273 WD40 repeat protein [G 99.6 1E-13 2.3E-18 145.5 19.4 186 72-260 26-221 (405)
116 KOG0301 Phospholipase A2-activ 99.6 2.4E-14 5.3E-19 162.1 15.5 209 79-307 69-285 (745)
117 KOG0307 Vesicle coat complex C 99.6 8.8E-15 1.9E-19 173.2 12.2 187 82-270 81-294 (1049)
118 KOG4283 Transcription-coupled 99.6 4.6E-14 9.9E-19 147.0 16.0 198 104-321 40-264 (397)
119 KOG0299 U3 snoRNP-associated p 99.6 6.1E-14 1.3E-18 153.1 17.7 180 71-255 204-399 (479)
120 KOG0639 Transducin-like enhanc 99.6 4.6E-14 1E-18 154.8 15.8 178 72-255 422-612 (705)
121 KOG4283 Transcription-coupled 99.6 9.6E-14 2.1E-18 144.7 17.2 176 79-255 54-266 (397)
122 KOG1446 Histone H3 (Lys4) meth 99.6 5.6E-13 1.2E-17 140.4 22.6 189 75-269 62-271 (311)
123 KOG1036 Mitotic spindle checkp 99.5 1.5E-12 3.2E-17 136.8 25.2 174 75-254 19-196 (323)
124 KOG1009 Chromatin assembly com 99.5 1.3E-13 2.9E-18 148.6 17.8 181 75-256 19-251 (434)
125 KOG0294 WD40 repeat-containing 99.5 2.1E-13 4.6E-18 143.4 18.3 151 103-260 39-197 (362)
126 KOG0301 Phospholipase A2-activ 99.5 1.2E-13 2.5E-18 156.7 17.5 171 72-255 104-278 (745)
127 KOG1332 Vesicle coat complex C 99.5 6.4E-14 1.4E-18 143.1 13.5 182 79-260 68-281 (299)
128 KOG1408 WD40 repeat protein [F 99.5 9.5E-14 2.1E-18 157.1 16.1 192 65-260 455-713 (1080)
129 KOG1274 WD40 repeat protein [G 99.5 3.9E-13 8.4E-18 156.3 20.4 174 71-252 98-287 (933)
130 KOG1539 WD repeat protein [Gen 99.5 3.4E-13 7.3E-18 155.4 18.5 180 70-255 449-637 (910)
131 TIGR03866 PQQ_ABC_repeats PQQ- 99.5 3.6E-12 7.8E-17 132.9 24.8 191 73-269 76-288 (300)
132 KOG1034 Transcriptional repres 99.5 3.2E-13 6.9E-18 142.6 15.2 174 80-255 104-373 (385)
133 KOG1036 Mitotic spindle checkp 99.5 1.1E-12 2.3E-17 137.8 19.0 170 79-255 63-294 (323)
134 KOG0647 mRNA export protein (c 99.5 1.3E-12 2.7E-17 137.0 17.9 184 70-257 73-316 (347)
135 KOG1034 Transcriptional repres 99.5 2E-12 4.4E-17 136.7 19.3 141 80-222 64-213 (385)
136 KOG4328 WD40 protein [Function 99.5 2E-12 4.2E-17 141.4 19.7 191 72-263 189-397 (498)
137 KOG0300 WD40 repeat-containing 99.5 7.8E-13 1.7E-17 138.8 15.3 193 83-283 126-365 (481)
138 KOG1539 WD repeat protein [Gen 99.5 3.8E-12 8.3E-17 146.8 21.9 210 84-324 415-638 (910)
139 KOG1408 WD40 repeat protein [F 99.5 1E-12 2.3E-17 148.8 16.1 242 55-307 369-710 (1080)
140 KOG0270 WD40 repeat-containing 99.5 1.5E-12 3.2E-17 141.9 16.7 175 76-255 251-438 (463)
141 KOG2445 Nuclear pore complex c 99.4 1.1E-11 2.5E-16 130.1 22.3 271 72-371 16-339 (361)
142 KOG2106 Uncharacterized conser 99.4 9.7E-12 2.1E-16 137.1 22.2 174 72-255 249-467 (626)
143 KOG4378 Nuclear protein COP1 [ 99.4 4E-12 8.6E-17 139.8 19.0 197 53-252 100-309 (673)
144 KOG1445 Tumor-specific antigen 99.4 1.3E-12 2.9E-17 146.3 15.4 211 30-254 5-233 (1012)
145 KOG0771 Prolactin regulatory e 99.4 1.6E-12 3.5E-17 141.1 14.6 185 72-260 147-349 (398)
146 KOG0303 Actin-binding protein 99.4 3.4E-12 7.4E-17 137.4 16.3 174 79-255 92-283 (472)
147 KOG4378 Nuclear protein COP1 [ 99.4 2.3E-12 4.9E-17 141.6 14.9 186 72-261 82-281 (673)
148 PRK05137 tolB translocation pr 99.4 9.6E-11 2.1E-15 132.7 27.6 158 91-254 182-352 (435)
149 PRK01742 tolB translocation pr 99.4 2.6E-11 5.6E-16 137.2 22.4 157 90-255 183-352 (429)
150 KOG1009 Chromatin assembly com 99.4 3.8E-12 8.3E-17 137.6 14.7 145 107-255 13-185 (434)
151 KOG2055 WD40 repeat protein [G 99.4 9.3E-12 2E-16 136.2 17.8 182 72-255 260-455 (514)
152 KOG2048 WD40 repeat protein [G 99.4 5.2E-11 1.1E-15 135.3 23.3 188 72-262 28-235 (691)
153 KOG0321 WD40 repeat-containing 99.4 1.8E-11 3.8E-16 138.2 19.1 194 77-274 108-359 (720)
154 KOG0642 Cell-cycle nuclear pro 99.4 4.2E-12 9.2E-17 141.7 13.6 196 56-255 281-551 (577)
155 KOG0644 Uncharacterized conser 99.4 1.5E-12 3.3E-17 149.7 9.8 185 72-264 193-430 (1113)
156 KOG0268 Sof1-like rRNA process 99.4 2.6E-12 5.7E-17 137.1 10.9 152 102-260 61-254 (433)
157 KOG0646 WD40 repeat protein [G 99.4 2.1E-11 4.6E-16 133.7 17.9 172 72-248 126-332 (476)
158 KOG1063 RNA polymerase II elon 99.4 9.8E-12 2.1E-16 141.3 15.7 188 58-246 514-734 (764)
159 KOG0641 WD40 repeat protein [G 99.3 8.3E-11 1.8E-15 119.1 19.9 173 80-254 151-338 (350)
160 KOG2394 WD40 protein DMR-N9 [G 99.3 1.7E-11 3.6E-16 136.2 15.3 172 78-257 182-392 (636)
161 COG2319 FOG: WD40 repeat [Gene 99.3 2.7E-10 5.8E-15 119.1 23.7 170 79-252 120-301 (466)
162 KOG0290 Conserved WD40 repeat- 99.3 2E-11 4.3E-16 127.5 14.6 170 90-261 120-319 (364)
163 PRK03629 tolB translocation pr 99.3 3.6E-10 7.8E-15 128.1 26.2 158 92-255 180-350 (429)
164 KOG1188 WD40 repeat protein [G 99.3 2.9E-11 6.4E-16 128.5 15.5 182 82-264 41-246 (376)
165 KOG2055 WD40 repeat protein [G 99.3 3.4E-11 7.5E-16 131.9 16.4 182 72-255 306-502 (514)
166 PRK04922 tolB translocation pr 99.3 2.2E-10 4.8E-15 129.7 23.4 157 92-254 185-354 (433)
167 KOG1310 WD40 repeat protein [G 99.3 6E-11 1.3E-15 131.9 18.1 154 102-255 45-220 (758)
168 KOG1273 WD40 repeat protein [G 99.3 2.4E-11 5.1E-16 128.0 13.2 145 110-255 26-173 (405)
169 KOG2919 Guanine nucleotide-bin 99.3 8.4E-11 1.8E-15 124.3 16.3 179 72-255 161-359 (406)
170 KOG1007 WD repeat protein TSSC 99.3 1.2E-10 2.5E-15 121.7 16.6 182 72-255 126-350 (370)
171 KOG1523 Actin-related protein 99.3 3.5E-10 7.6E-15 119.6 20.3 221 72-320 13-266 (361)
172 KOG2048 WD40 repeat protein [G 99.3 2.7E-10 5.8E-15 129.6 20.8 178 72-255 72-265 (691)
173 KOG4328 WD40 protein [Function 99.2 6.2E-11 1.4E-15 129.8 14.0 194 103-325 182-391 (498)
174 KOG4227 WD40 repeat protein [G 99.2 9.6E-11 2.1E-15 125.9 15.1 161 102-263 51-228 (609)
175 COG2319 FOG: WD40 repeat [Gene 99.2 1.9E-09 4.1E-14 112.7 24.4 179 72-253 158-346 (466)
176 PF08662 eIF2A: Eukaryotic tra 99.2 6.7E-10 1.5E-14 113.0 20.2 142 111-260 9-168 (194)
177 PRK11028 6-phosphogluconolacto 99.2 3.5E-09 7.6E-14 115.0 27.2 172 87-260 8-205 (330)
178 PRK02889 tolB translocation pr 99.2 1.1E-09 2.3E-14 124.1 23.9 202 91-323 176-390 (427)
179 PF08662 eIF2A: Eukaryotic tra 99.2 1E-09 2.2E-14 111.7 20.9 112 106-222 58-181 (194)
180 KOG2110 Uncharacterized conser 99.2 6E-10 1.3E-14 119.8 19.4 160 62-223 78-251 (391)
181 KOG1524 WD40 repeat-containing 99.2 1.8E-10 4E-15 127.8 16.0 162 81-249 75-241 (737)
182 KOG1523 Actin-related protein 99.2 1.6E-10 3.5E-15 122.2 14.8 147 107-254 10-165 (361)
183 TIGR02800 propeller_TolB tol-p 99.2 2.6E-09 5.7E-14 119.2 25.5 158 92-255 171-341 (417)
184 KOG1538 Uncharacterized conser 99.2 9.4E-11 2E-15 132.3 13.7 138 109-254 14-151 (1081)
185 KOG2106 Uncharacterized conser 99.2 5.7E-10 1.2E-14 123.4 19.5 213 36-255 288-511 (626)
186 KOG0307 Vesicle coat complex C 99.2 4E-11 8.6E-16 142.7 11.3 181 72-255 119-316 (1049)
187 KOG1007 WD repeat protein TSSC 99.2 2.2E-10 4.8E-15 119.7 14.8 147 105-255 121-278 (370)
188 PRK01742 tolB translocation pr 99.2 6.4E-10 1.4E-14 125.9 19.5 175 72-255 206-391 (429)
189 KOG1524 WD40 repeat-containing 99.2 3.4E-10 7.3E-15 125.8 15.8 165 74-255 109-276 (737)
190 KOG2919 Guanine nucleotide-bin 99.2 8.5E-10 1.8E-14 116.8 17.7 215 75-298 55-315 (406)
191 PRK03629 tolB translocation pr 99.2 5.7E-09 1.2E-13 118.3 25.6 177 72-255 201-393 (429)
192 KOG1063 RNA polymerase II elon 99.2 2.1E-10 4.5E-15 130.6 13.1 142 102-245 520-674 (764)
193 PRK11028 6-phosphogluconolacto 99.2 6.2E-09 1.3E-13 113.1 24.0 183 72-255 82-293 (330)
194 KOG4227 WD40 repeat protein [G 99.2 1.2E-09 2.5E-14 117.7 17.6 248 72-325 59-338 (609)
195 KOG0649 WD40 repeat protein [G 99.1 4.3E-09 9.3E-14 108.1 20.7 165 81-255 72-264 (325)
196 KOG2110 Uncharacterized conser 99.1 1.5E-09 3.3E-14 116.7 17.9 158 91-255 68-238 (391)
197 KOG1188 WD40 repeat protein [G 99.1 3.1E-10 6.6E-15 120.9 12.2 137 120-257 41-187 (376)
198 KOG2445 Nuclear pore complex c 99.1 3.7E-09 8.1E-14 111.5 20.1 143 104-246 10-180 (361)
199 PRK05137 tolB translocation pr 99.1 4.9E-09 1.1E-13 118.9 22.8 177 72-255 204-396 (435)
200 PRK04792 tolB translocation pr 99.1 1E-08 2.3E-13 116.9 25.5 158 92-255 199-369 (448)
201 KOG0290 Conserved WD40 repeat- 99.1 8.4E-10 1.8E-14 115.5 14.7 174 78-251 160-352 (364)
202 PRK00178 tolB translocation pr 99.1 9E-09 2E-13 116.1 24.4 158 92-255 180-350 (430)
203 PRK04922 tolB translocation pr 99.1 6.9E-09 1.5E-13 117.6 23.4 175 74-255 208-398 (433)
204 KOG1538 Uncharacterized conser 99.1 4.3E-09 9.3E-14 119.2 20.6 216 75-325 18-285 (1081)
205 KOG2139 WD40 repeat protein [G 99.1 3.9E-09 8.5E-14 113.3 19.1 178 72-255 101-300 (445)
206 KOG2139 WD40 repeat protein [G 99.1 1.6E-08 3.5E-13 108.6 22.7 181 72-255 143-365 (445)
207 KOG0650 WD40 repeat nucleolar 99.1 2.4E-09 5.3E-14 120.4 17.1 149 103-255 396-586 (733)
208 PRK02889 tolB translocation pr 99.1 1.1E-08 2.5E-13 115.8 22.8 177 72-255 198-390 (427)
209 KOG1310 WD40 repeat protein [G 99.1 1.4E-09 3.1E-14 121.2 14.5 149 72-220 53-231 (758)
210 KOG0771 Prolactin regulatory e 99.0 2.2E-09 4.7E-14 117.1 12.6 144 111-256 148-302 (398)
211 KOG2394 WD40 protein DMR-N9 [G 99.0 8.9E-10 1.9E-14 122.7 9.3 94 107-201 290-384 (636)
212 KOG1240 Protein kinase contain 99.0 5.2E-08 1.1E-12 117.0 23.9 196 74-271 1054-1284(1431)
213 KOG0644 Uncharacterized conser 99.0 3.7E-10 8E-15 130.5 5.5 150 102-255 185-336 (1113)
214 KOG0649 WD40 repeat protein [G 99.0 1.4E-08 3E-13 104.4 16.0 185 75-265 16-240 (325)
215 TIGR02800 propeller_TolB tol-p 99.0 5.3E-08 1.1E-12 108.7 22.2 175 74-255 194-384 (417)
216 KOG0642 Cell-cycle nuclear pro 99.0 5.2E-09 1.1E-13 117.4 13.8 154 71-225 346-566 (577)
217 KOG0974 WD-repeat protein WDR6 98.9 7.7E-09 1.7E-13 122.6 13.7 146 75-223 139-291 (967)
218 PRK00178 tolB translocation pr 98.9 1.5E-07 3.2E-12 106.4 23.5 176 73-255 202-393 (430)
219 PRK01029 tolB translocation pr 98.9 1.3E-07 2.8E-12 107.5 23.0 159 92-255 212-390 (428)
220 KOG4547 WD40 repeat-containing 98.9 5.4E-08 1.2E-12 110.0 18.8 171 80-255 4-209 (541)
221 PRK01029 tolB translocation pr 98.9 3.5E-07 7.6E-12 104.0 25.5 225 92-358 166-411 (428)
222 KOG1587 Cytoplasmic dynein int 98.9 1.5E-07 3.3E-12 109.1 22.2 186 72-260 245-472 (555)
223 KOG1517 Guanine nucleotide bin 98.9 3.8E-08 8.1E-13 116.6 16.3 179 75-253 1171-1369(1387)
224 KOG1963 WD40 repeat protein [G 98.9 2E-07 4.4E-12 109.3 22.0 184 68-253 204-416 (792)
225 KOG0322 G-protein beta subunit 98.8 1.2E-08 2.7E-13 105.8 10.4 138 81-219 165-322 (323)
226 PRK04792 tolB translocation pr 98.8 4.4E-07 9.5E-12 103.7 23.8 175 74-255 222-412 (448)
227 KOG1517 Guanine nucleotide bin 98.8 1.5E-07 3.2E-12 111.7 19.8 203 72-276 1114-1348(1387)
228 KOG2111 Uncharacterized conser 98.8 2.7E-07 5.8E-12 98.1 19.6 170 53-224 74-260 (346)
229 KOG0650 WD40 repeat nucleolar 98.8 1.9E-08 4.1E-13 113.4 11.6 188 70-259 522-729 (733)
230 KOG0322 G-protein beta subunit 98.8 2.9E-08 6.4E-13 103.1 10.5 146 106-255 149-313 (323)
231 KOG1963 WD40 repeat protein [G 98.8 1.1E-06 2.4E-11 103.2 24.2 177 75-255 22-271 (792)
232 KOG1272 WD40-repeat-containing 98.8 2.5E-08 5.5E-13 109.8 10.0 175 69-248 129-347 (545)
233 PRK04043 tolB translocation pr 98.8 3E-06 6.4E-11 96.2 26.9 188 109-323 189-387 (419)
234 KOG1272 WD40-repeat-containing 98.7 2.3E-08 5.1E-13 110.1 8.9 168 79-250 219-394 (545)
235 KOG2111 Uncharacterized conser 98.7 6.1E-07 1.3E-11 95.5 18.1 162 90-255 74-246 (346)
236 KOG2321 WD40 repeat protein [G 98.7 1.2E-06 2.5E-11 99.0 19.9 157 111-273 137-315 (703)
237 KOG3881 Uncharacterized conser 98.7 1E-06 2.3E-11 95.8 18.3 173 79-254 113-309 (412)
238 KOG0280 Uncharacterized conser 98.6 3.6E-07 7.9E-12 96.3 13.8 183 72-255 124-320 (339)
239 KOG1240 Protein kinase contain 98.6 5.8E-07 1.3E-11 108.3 17.2 164 96-261 1034-1226(1431)
240 PF02239 Cytochrom_D1: Cytochr 98.6 3.4E-06 7.4E-11 94.2 22.4 167 85-255 10-191 (369)
241 KOG1587 Cytoplasmic dynein int 98.6 1.1E-06 2.3E-11 102.2 18.2 171 82-254 306-505 (555)
242 KOG0974 WD-repeat protein WDR6 98.6 7.4E-07 1.6E-11 106.2 16.7 170 79-255 97-278 (967)
243 KOG2321 WD40 repeat protein [G 98.6 6.1E-07 1.3E-11 101.2 14.9 166 84-254 148-332 (703)
244 KOG4497 Uncharacterized conser 98.6 4.3E-07 9.3E-12 96.8 13.0 138 112-255 13-153 (447)
245 PF02239 Cytochrom_D1: Cytochr 98.6 3.7E-06 7.9E-11 94.0 20.6 140 120-260 6-156 (369)
246 COG2706 3-carboxymuconate cycl 98.6 2.9E-05 6.3E-10 84.3 26.0 165 90-255 15-210 (346)
247 KOG3881 Uncharacterized conser 98.6 1.1E-06 2.3E-11 95.7 15.0 162 82-248 162-344 (412)
248 PF10282 Lactonase: Lactonase, 98.5 4.4E-05 9.5E-10 84.3 27.3 164 91-255 13-211 (345)
249 KOG0280 Uncharacterized conser 98.5 2.9E-06 6.2E-11 89.7 16.5 163 83-248 87-266 (339)
250 PF10282 Lactonase: Lactonase, 98.5 2.7E-05 5.8E-10 86.0 25.2 183 72-255 89-311 (345)
251 KOG3914 WD repeat protein WDR4 98.5 8E-07 1.7E-11 97.0 10.8 99 89-189 130-232 (390)
252 PRK04043 tolB translocation pr 98.4 5.1E-05 1.1E-09 86.3 24.9 173 74-255 192-387 (419)
253 KOG1354 Serine/threonine prote 98.4 1.1E-05 2.3E-10 86.9 17.6 253 72-358 28-367 (433)
254 COG2706 3-carboxymuconate cycl 98.4 8.2E-05 1.8E-09 80.9 23.3 182 72-255 91-310 (346)
255 KOG4547 WD40 repeat-containing 98.4 8.7E-06 1.9E-10 92.5 16.1 140 79-221 68-221 (541)
256 COG4946 Uncharacterized protei 98.3 2E-05 4.4E-10 87.6 18.2 158 52-210 342-507 (668)
257 KOG2315 Predicted translation 98.3 1.1E-05 2.4E-10 91.3 16.0 148 89-247 249-412 (566)
258 KOG4497 Uncharacterized conser 98.3 2.5E-06 5.4E-11 91.1 10.2 173 74-251 13-194 (447)
259 COG4946 Uncharacterized protei 98.3 5.1E-05 1.1E-09 84.5 20.5 168 80-254 331-507 (668)
260 KOG1832 HIV-1 Vpr-binding prot 98.3 8.8E-07 1.9E-11 103.5 5.7 180 71-263 1103-1294(1516)
261 KOG1334 WD40 repeat protein [G 98.3 6.3E-06 1.4E-10 91.8 11.8 154 102-255 137-301 (559)
262 TIGR02658 TTQ_MADH_Hv methylam 98.2 0.00078 1.7E-08 74.9 28.2 96 91-188 27-144 (352)
263 KOG1334 WD40 repeat protein [G 98.2 1.3E-05 2.9E-10 89.3 13.3 184 72-255 145-356 (559)
264 KOG4532 WD40-like repeat conta 98.2 7.1E-05 1.5E-09 78.6 17.4 175 79-254 126-321 (344)
265 KOG1354 Serine/threonine prote 98.2 5.8E-05 1.2E-09 81.4 16.2 147 105-254 162-348 (433)
266 PF00400 WD40: WD domain, G-be 98.1 7.1E-06 1.5E-10 60.9 6.1 39 139-178 1-39 (39)
267 PLN02919 haloacid dehalogenase 98.1 0.00018 3.8E-09 90.5 21.1 151 73-224 686-892 (1057)
268 KOG4190 Uncharacterized conser 98.0 7.6E-06 1.7E-10 91.8 7.2 153 72-226 738-912 (1034)
269 PLN02919 haloacid dehalogenase 98.0 0.00038 8.3E-09 87.6 23.0 178 73-252 627-875 (1057)
270 KOG3914 WD repeat protein WDR4 98.0 3.5E-05 7.5E-10 84.5 11.6 149 75-226 68-229 (390)
271 TIGR02658 TTQ_MADH_Hv methylam 98.0 0.0014 3E-08 73.0 22.9 174 77-255 53-319 (352)
272 KOG2695 WD40 repeat protein [G 98.0 2E-05 4.2E-10 85.0 7.9 159 85-244 228-401 (425)
273 KOG4190 Uncharacterized conser 97.9 6.1E-06 1.3E-10 92.6 3.8 150 102-254 730-895 (1034)
274 KOG1832 HIV-1 Vpr-binding prot 97.9 1.1E-05 2.3E-10 94.7 5.7 237 102-351 1096-1349(1516)
275 COG5170 CDC55 Serine/threonine 97.9 0.00033 7.1E-09 74.9 15.2 191 72-264 29-313 (460)
276 KOG2315 Predicted translation 97.9 0.00052 1.1E-08 78.1 17.7 136 111-255 221-374 (566)
277 PF07433 DUF1513: Protein of u 97.8 0.0045 9.7E-08 67.3 23.4 216 108-359 5-256 (305)
278 PF00400 WD40: WD domain, G-be 97.8 2.6E-05 5.6E-10 57.8 4.5 34 102-135 6-39 (39)
279 PF15492 Nbas_N: Neuroblastoma 97.8 0.0053 1.1E-07 65.4 22.8 184 76-261 4-260 (282)
280 KOG2041 WD40 repeat protein [G 97.8 0.00018 4E-09 83.2 12.8 107 72-179 17-144 (1189)
281 KOG2066 Vacuolar assembly/sort 97.8 0.00052 1.1E-08 80.9 16.2 161 80-250 48-220 (846)
282 PF08450 SGL: SMP-30/Gluconola 97.8 0.0045 9.8E-08 64.6 21.7 169 80-252 11-200 (246)
283 KOG4532 WD40-like repeat conta 97.7 0.0022 4.9E-08 67.6 18.7 167 79-248 82-263 (344)
284 KOG1064 RAVE (regulator of V-A 97.7 7.3E-05 1.6E-09 93.5 9.1 149 72-226 2211-2372(2439)
285 KOG4714 Nucleoporin [Nuclear s 97.7 0.00012 2.6E-09 76.6 9.4 92 90-181 158-255 (319)
286 KOG1409 Uncharacterized conser 97.7 0.00044 9.5E-09 74.9 13.6 179 79-260 34-270 (404)
287 KOG1645 RING-finger-containing 97.7 0.0002 4.4E-09 78.6 11.3 151 103-255 189-350 (463)
288 COG5170 CDC55 Serine/threonine 97.7 0.00028 6.1E-09 75.3 11.2 147 105-254 170-356 (460)
289 KOG2314 Translation initiation 97.7 0.00027 5.8E-09 80.2 11.3 137 109-252 212-363 (698)
290 PF11768 DUF3312: Protein of u 97.6 0.0027 5.9E-08 73.1 18.9 113 109-223 207-332 (545)
291 PF07433 DUF1513: Protein of u 97.6 0.0069 1.5E-07 65.9 20.9 170 77-255 58-276 (305)
292 KOG2041 WD40 repeat protein [G 97.6 0.00015 3.3E-09 83.9 8.5 142 106-252 13-173 (1189)
293 KOG1409 Uncharacterized conser 97.6 0.0011 2.3E-08 72.0 14.3 151 72-224 71-274 (404)
294 KOG0309 Conserved WD40 repeat- 97.6 0.00026 5.6E-09 82.4 10.1 168 75-246 30-212 (1081)
295 PF08450 SGL: SMP-30/Gluconola 97.6 0.026 5.5E-07 58.9 24.3 173 74-254 44-244 (246)
296 KOG2314 Translation initiation 97.5 0.019 4.2E-07 65.7 23.3 265 56-360 233-535 (698)
297 COG5354 Uncharacterized protei 97.5 0.0015 3.3E-08 73.7 14.6 152 91-257 255-421 (561)
298 PF04762 IKI3: IKI3 family; I 97.5 0.012 2.7E-07 73.2 23.8 179 72-254 78-323 (928)
299 KOG2695 WD40 repeat protein [G 97.5 0.00025 5.4E-09 76.7 7.7 112 80-192 263-388 (425)
300 KOG1275 PAB-dependent poly(A) 97.5 0.00072 1.6E-08 80.5 11.7 142 74-218 180-340 (1118)
301 KOG1912 WD40 repeat protein [G 97.4 0.00096 2.1E-08 78.3 11.6 133 108-245 16-165 (1062)
302 PF15492 Nbas_N: Neuroblastoma 97.4 0.055 1.2E-06 57.9 23.7 230 113-362 3-271 (282)
303 PF04762 IKI3: IKI3 family; I 97.4 0.014 3E-07 72.8 22.3 138 109-249 211-362 (928)
304 COG5354 Uncharacterized protei 97.4 0.016 3.5E-07 65.8 20.5 261 72-361 35-326 (561)
305 KOG4714 Nucleoporin [Nuclear s 97.4 0.00039 8.4E-09 72.9 7.3 143 79-221 99-255 (319)
306 KOG1275 PAB-dependent poly(A) 97.3 0.0022 4.7E-08 76.6 13.7 171 80-255 146-332 (1118)
307 KOG1920 IkappaB kinase complex 97.3 0.013 2.8E-07 72.2 20.5 195 56-252 55-306 (1265)
308 COG0823 TolB Periplasmic compo 97.3 0.0087 1.9E-07 68.4 18.2 161 130-320 174-342 (425)
309 PF11768 DUF3312: Protein of u 97.3 0.0033 7.2E-08 72.4 14.3 75 105-182 257-331 (545)
310 KOG2066 Vacuolar assembly/sort 97.3 0.0029 6.4E-08 74.8 13.5 135 107-255 39-178 (846)
311 COG0823 TolB Periplasmic compo 97.2 0.0026 5.6E-08 72.6 12.4 147 103-254 188-344 (425)
312 KOG1645 RING-finger-containing 97.2 0.0021 4.5E-08 71.0 10.8 94 131-224 175-270 (463)
313 KOG2114 Vacuolar assembly/sort 97.2 0.036 7.7E-07 66.4 21.5 179 74-255 28-234 (933)
314 KOG1064 RAVE (regulator of V-A 97.2 0.0013 2.7E-08 83.1 10.1 151 106-262 2207-2368(2439)
315 KOG3621 WD40 repeat-containing 97.2 0.016 3.5E-07 68.0 17.8 149 72-223 36-200 (726)
316 KOG1008 Uncharacterized conser 97.1 0.00011 2.4E-09 84.6 0.1 171 81-255 70-263 (783)
317 TIGR03300 assembly_YfgL outer 97.1 0.014 3.1E-07 64.7 16.5 138 82-226 191-344 (377)
318 KOG0309 Conserved WD40 repeat- 97.1 0.0016 3.4E-08 76.2 8.5 164 81-248 82-258 (1081)
319 TIGR03300 assembly_YfgL outer 97.0 0.0092 2E-07 66.2 13.6 131 81-217 241-376 (377)
320 smart00320 WD40 WD40 repeats. 96.8 0.0034 7.4E-08 42.9 5.7 39 139-178 2-40 (40)
321 PF13360 PQQ_2: PQQ-like domai 96.8 0.042 9.1E-07 56.2 15.9 141 80-226 75-236 (238)
322 PF13360 PQQ_2: PQQ-like domai 96.7 0.023 5E-07 58.1 13.2 106 118-226 35-146 (238)
323 KOG0882 Cyclophilin-related pe 96.6 0.0028 6E-08 70.8 6.0 79 147-226 142-237 (558)
324 PF08553 VID27: VID27 cytoplas 96.6 0.023 4.9E-07 69.1 14.1 132 118-255 492-638 (794)
325 KOG1912 WD40 repeat protein [G 96.6 0.16 3.5E-06 60.4 19.8 139 80-219 25-185 (1062)
326 KOG4640 Anaphase-promoting com 96.5 0.012 2.5E-07 68.4 10.0 93 107-201 20-115 (665)
327 PF00930 DPPIV_N: Dipeptidyl p 96.3 0.081 1.7E-06 58.7 14.8 171 171-358 22-226 (353)
328 KOG3621 WD40 repeat-containing 96.3 0.021 4.5E-07 67.1 10.3 138 106-244 32-179 (726)
329 PRK02888 nitrous-oxide reducta 96.3 0.085 1.8E-06 62.4 15.3 100 118-221 287-405 (635)
330 COG3391 Uncharacterized conser 96.2 0.59 1.3E-05 52.7 21.4 145 110-255 76-226 (381)
331 PRK02888 nitrous-oxide reducta 96.2 0.45 9.8E-06 56.5 20.6 146 113-261 198-405 (635)
332 PRK13616 lipoprotein LpqB; Pro 96.2 0.095 2.1E-06 62.4 15.4 139 106-250 348-511 (591)
333 KOG2114 Vacuolar assembly/sort 96.1 0.25 5.5E-06 59.5 18.4 134 114-249 30-185 (933)
334 COG3391 Uncharacterized conser 96.1 0.65 1.4E-05 52.3 21.2 176 74-253 78-270 (381)
335 smart00320 WD40 WD40 repeats. 96.0 0.0095 2.1E-07 40.6 3.9 32 104-135 9-40 (40)
336 PF04053 Coatomer_WDAD: Coatom 96.0 0.12 2.6E-06 59.6 14.7 131 109-255 34-164 (443)
337 PF08953 DUF1899: Domain of un 96.0 0.0068 1.5E-07 51.3 3.4 41 30-70 3-43 (65)
338 PF14783 BBS2_Mid: Ciliary BBS 95.9 0.4 8.6E-06 45.0 15.1 96 110-212 2-105 (111)
339 PF04053 Coatomer_WDAD: Coatom 95.9 0.084 1.8E-06 60.7 12.7 170 72-253 35-212 (443)
340 KOG4640 Anaphase-promoting com 95.8 0.034 7.3E-07 64.7 9.2 93 149-245 20-115 (665)
341 KOG1920 IkappaB kinase complex 95.8 0.64 1.4E-05 58.1 20.3 157 92-255 54-261 (1265)
342 COG3204 Uncharacterized protei 95.7 1.3 2.8E-05 48.1 19.8 149 102-252 80-249 (316)
343 PF15390 DUF4613: Domain of un 95.7 0.52 1.1E-05 55.1 17.9 151 103-255 52-221 (671)
344 PF02897 Peptidase_S9_N: Proly 95.6 0.71 1.5E-05 52.0 19.1 157 93-253 109-294 (414)
345 PF00780 CNH: CNH domain; Int 95.6 0.93 2E-05 47.9 18.8 142 79-224 5-169 (275)
346 KOG4649 PQQ (pyrrolo-quinoline 95.5 0.47 1E-05 50.6 15.3 136 75-213 17-158 (354)
347 KOG0882 Cyclophilin-related pe 95.5 0.15 3.2E-06 57.5 12.3 141 85-226 116-311 (558)
348 PF14583 Pectate_lyase22: Olig 95.4 1.4 3E-05 49.8 19.5 138 113-255 41-207 (386)
349 KOG3617 WD40 and TPR repeat-co 95.3 0.038 8.2E-07 65.9 7.3 112 112-226 20-137 (1416)
350 PF10647 Gmad1: Lipoprotein Lp 95.1 0.71 1.5E-05 49.1 16.0 142 109-254 25-184 (253)
351 PRK11138 outer membrane biogen 95.1 0.75 1.6E-05 51.7 16.9 102 118-226 255-359 (394)
352 PRK11138 outer membrane biogen 94.9 0.4 8.6E-06 53.9 14.0 132 81-219 256-393 (394)
353 KOG3630 Nuclear pore complex, 94.6 0.26 5.7E-06 60.9 11.9 146 108-255 101-263 (1405)
354 PF00780 CNH: CNH domain; Int 94.6 1.1 2.3E-05 47.4 15.6 131 117-254 5-155 (275)
355 PRK13616 lipoprotein LpqB; Pro 94.6 0.97 2.1E-05 54.0 16.6 129 109-246 398-551 (591)
356 KOG2395 Protein involved in va 94.6 0.29 6.3E-06 56.4 11.5 134 116-255 342-491 (644)
357 COG3386 Gluconolactonase [Carb 94.5 3.3 7.2E-05 45.6 19.3 145 108-257 111-277 (307)
358 PF05096 Glu_cyclase_2: Glutam 94.3 2.1 4.5E-05 46.0 16.7 87 110-198 47-136 (264)
359 PF06977 SdiA-regulated: SdiA- 93.9 2.7 5.8E-05 44.9 16.7 142 75-217 70-247 (248)
360 PF14870 PSII_BNR: Photosynthe 93.9 4 8.6E-05 44.9 18.4 146 104-252 141-292 (302)
361 PF00930 DPPIV_N: Dipeptidyl p 93.9 2.9 6.3E-05 46.4 17.8 145 107-255 183-347 (353)
362 KOG1008 Uncharacterized conser 93.8 0.026 5.5E-07 65.8 1.3 130 89-220 127-275 (783)
363 KOG2079 Vacuolar assembly/sort 93.6 0.3 6.5E-06 60.2 9.8 97 80-179 98-202 (1206)
364 KOG4649 PQQ (pyrrolo-quinoline 93.5 1.6 3.4E-05 46.7 13.7 128 119-252 23-153 (354)
365 COG3490 Uncharacterized protei 93.5 5.4 0.00012 43.4 17.7 170 76-255 43-244 (366)
366 PF02897 Peptidase_S9_N: Proly 93.3 4 8.8E-05 45.9 17.9 199 56-255 109-344 (414)
367 PF06977 SdiA-regulated: SdiA- 93.2 5.8 0.00013 42.4 17.8 170 74-252 36-238 (248)
368 PF15390 DUF4613: Domain of un 92.9 1.6 3.4E-05 51.3 13.6 142 108-259 20-185 (671)
369 PF08553 VID27: VID27 cytoplas 92.8 1.4 3.1E-05 54.0 14.0 129 89-220 502-647 (794)
370 PF03178 CPSF_A: CPSF A subuni 92.6 2.9 6.4E-05 45.5 15.1 130 119-255 42-192 (321)
371 PF12234 Rav1p_C: RAVE protein 92.5 2.2 4.7E-05 51.2 14.7 111 109-220 31-156 (631)
372 cd00216 PQQ_DH Dehydrogenases 92.4 6.9 0.00015 45.6 18.7 99 121-226 303-430 (488)
373 COG3386 Gluconolactonase [Carb 92.4 6.3 0.00014 43.4 17.2 134 83-220 39-193 (307)
374 PF14783 BBS2_Mid: Ciliary BBS 92.3 1.6 3.5E-05 40.9 10.7 93 79-175 13-109 (111)
375 TIGR02604 Piru_Ver_Nterm putat 92.3 3.9 8.4E-05 45.8 15.9 100 108-210 14-142 (367)
376 PF05694 SBP56: 56kDa selenium 92.1 21 0.00046 41.1 21.0 175 80-255 86-331 (461)
377 KOG2444 WD40 repeat protein [G 92.1 0.81 1.8E-05 47.9 9.2 105 75-180 64-177 (238)
378 PRK13684 Ycf48-like protein; P 91.9 21 0.00046 39.6 20.9 141 107-252 172-319 (334)
379 KOG2395 Protein involved in va 91.9 1.4 3.1E-05 51.0 11.6 135 82-220 347-500 (644)
380 KOG3617 WD40 and TPR repeat-co 91.6 0.56 1.2E-05 56.5 8.2 90 89-180 39-131 (1416)
381 PF14583 Pectate_lyase22: Olig 91.5 3.2 6.9E-05 46.9 13.7 173 79-253 45-255 (386)
382 PF08954 DUF1900: Domain of un 91.3 0.075 1.6E-06 51.5 0.7 67 332-398 3-69 (136)
383 COG5167 VID27 Protein involved 91.0 3.8 8.2E-05 47.5 13.6 134 116-255 476-623 (776)
384 PRK10115 protease 2; Provision 90.8 41 0.00088 41.2 23.5 194 56-255 112-333 (686)
385 PF12894 Apc4_WD40: Anaphase-p 90.8 0.72 1.6E-05 36.6 5.7 34 107-141 11-44 (47)
386 TIGR02604 Piru_Ver_Nterm putat 90.1 9.3 0.0002 42.8 16.1 101 108-211 72-203 (367)
387 PRK10115 protease 2; Provision 89.8 17 0.00037 44.4 19.1 110 108-221 127-256 (686)
388 PF04841 Vps16_N: Vps16, N-ter 89.7 24 0.00052 40.4 19.2 169 72-249 83-273 (410)
389 KOG2079 Vacuolar assembly/sort 89.6 1 2.2E-05 55.7 8.3 100 118-219 98-202 (1206)
390 cd00216 PQQ_DH Dehydrogenases 89.6 8 0.00017 45.1 15.6 105 81-189 61-192 (488)
391 COG3490 Uncharacterized protei 89.4 4.5 9.8E-05 43.9 11.9 154 102-262 114-312 (366)
392 PF08596 Lgl_C: Lethal giant l 89.2 9.3 0.0002 43.6 15.2 141 72-220 4-173 (395)
393 PF12894 Apc4_WD40: Anaphase-p 89.1 0.98 2.1E-05 35.8 5.2 34 149-184 11-44 (47)
394 KOG2444 WD40 repeat protein [G 89.1 1.2 2.5E-05 46.8 7.2 104 119-222 70-179 (238)
395 PF05694 SBP56: 56kDa selenium 88.8 5.6 0.00012 45.6 12.9 147 109-255 182-393 (461)
396 PF10647 Gmad1: Lipoprotein Lp 88.8 4.1 8.9E-05 43.3 11.5 102 151-255 25-131 (253)
397 KOG3630 Nuclear pore complex, 88.4 28 0.0006 44.2 19.0 120 88-210 121-262 (1405)
398 TIGR03075 PQQ_enz_alc_DH PQQ-d 88.4 21 0.00045 42.2 18.0 55 172-226 441-496 (527)
399 TIGR03075 PQQ_enz_alc_DH PQQ-d 88.3 18 0.00038 42.9 17.3 73 129-204 441-516 (527)
400 PF06433 Me-amine-dh_H: Methyl 88.2 33 0.00072 38.4 18.1 146 81-226 147-326 (342)
401 PF10214 Rrn6: RNA polymerase 87.7 82 0.0018 39.1 24.6 149 105-255 77-268 (765)
402 PF14655 RAB3GAP2_N: Rab3 GTPa 86.8 3.8 8.3E-05 46.9 10.2 85 104-188 304-406 (415)
403 PF03178 CPSF_A: CPSF A subuni 86.5 7.2 0.00016 42.5 12.0 125 91-221 62-203 (321)
404 PF04841 Vps16_N: Vps16, N-ter 86.3 31 0.00067 39.5 17.3 128 80-223 189-317 (410)
405 PF08596 Lgl_C: Lethal giant l 86.2 15 0.00032 41.9 14.6 182 72-254 89-325 (395)
406 TIGR03606 non_repeat_PQQ dehyd 85.6 53 0.0011 38.3 18.7 52 108-159 30-88 (454)
407 KOG4499 Ca2+-binding protein R 85.4 23 0.00049 37.8 14.0 143 107-254 108-273 (310)
408 PF14761 HPS3_N: Hermansky-Pud 85.4 44 0.00096 35.1 16.1 135 82-220 29-214 (215)
409 PF07569 Hira: TUP1-like enhan 85.1 5.1 0.00011 41.9 9.5 62 161-222 21-97 (219)
410 KOG4499 Ca2+-binding protein R 84.9 21 0.00045 38.1 13.4 92 110-202 160-264 (310)
411 PLN00033 photosystem II stabil 84.9 34 0.00073 39.2 16.6 139 109-253 240-388 (398)
412 PF12234 Rav1p_C: RAVE protein 84.6 14 0.0003 44.6 13.8 105 150-255 30-148 (631)
413 PF13449 Phytase-like: Esteras 84.4 47 0.001 36.6 17.1 144 107-252 19-231 (326)
414 PF14781 BBS2_N: Ciliary BBSom 83.4 20 0.00044 34.9 11.8 110 113-224 4-129 (136)
415 PF14870 PSII_BNR: Photosynthe 83.3 35 0.00076 37.6 15.3 137 77-217 152-301 (302)
416 PF06433 Me-amine-dh_H: Methyl 83.2 7 0.00015 43.6 9.9 82 110-192 240-332 (342)
417 TIGR03074 PQQ_membr_DH membran 83.1 22 0.00047 44.1 15.0 109 118-226 193-350 (764)
418 KOG2377 Uncharacterized conser 82.2 19 0.00041 41.5 12.7 140 111-255 26-173 (657)
419 PF14761 HPS3_N: Hermansky-Pud 81.5 26 0.00057 36.7 12.7 102 120-223 29-166 (215)
420 KOG1897 Damage-specific DNA bi 80.6 1.6E+02 0.0035 37.3 20.5 173 80-254 460-648 (1096)
421 COG3823 Glutamine cyclotransfe 80.6 12 0.00025 39.3 9.6 25 234-258 227-251 (262)
422 COG3204 Uncharacterized protei 78.0 23 0.00049 38.9 11.2 110 145-255 81-200 (316)
423 PF05935 Arylsulfotrans: Aryls 77.1 1.2E+02 0.0025 35.5 17.9 134 121-260 117-299 (477)
424 PF14781 BBS2_N: Ciliary BBSom 77.0 31 0.00067 33.7 10.8 85 155-244 4-101 (136)
425 PF10313 DUF2415: Uncharacteri 76.8 6.6 0.00014 30.8 5.0 32 150-181 1-34 (43)
426 TIGR03074 PQQ_membr_DH membran 76.6 1.4E+02 0.0031 37.1 19.1 145 81-226 260-483 (764)
427 KOG1897 Damage-specific DNA bi 76.3 57 0.0012 41.0 15.1 154 93-252 752-930 (1096)
428 COG4257 Vgb Streptogramin lyas 76.2 58 0.0013 35.6 13.5 130 108-252 62-205 (353)
429 PF10313 DUF2415: Uncharacteri 76.0 9.4 0.0002 29.9 5.7 31 108-138 1-34 (43)
430 PF10168 Nup88: Nuclear pore c 75.5 33 0.00072 42.2 13.2 74 108-182 85-181 (717)
431 KOG4441 Proteins containing BT 75.0 1.5E+02 0.0032 35.7 18.3 104 116-223 282-407 (571)
432 PF07995 GSDH: Glucose / Sorbo 74.8 31 0.00068 38.1 11.9 100 109-210 3-132 (331)
433 PF08728 CRT10: CRT10; InterP 74.3 94 0.002 38.2 16.3 84 649-740 542-627 (717)
434 TIGR03606 non_repeat_PQQ dehyd 74.3 85 0.0019 36.6 15.5 110 145-255 25-165 (454)
435 PHA02713 hypothetical protein; 74.3 93 0.002 37.1 16.4 126 91-221 320-489 (557)
436 PF05096 Glu_cyclase_2: Glutam 74.2 1.3E+02 0.0029 32.6 15.8 129 77-210 97-249 (264)
437 PF05935 Arylsulfotrans: Aryls 74.1 1.8E+02 0.0039 34.0 18.4 135 81-226 127-307 (477)
438 PRK13684 Ycf48-like protein; P 73.7 1E+02 0.0023 34.1 15.7 109 106-218 213-329 (334)
439 PHA02713 hypothetical protein; 73.1 57 0.0012 38.9 14.2 126 92-223 368-536 (557)
440 KOG2377 Uncharacterized conser 73.0 39 0.00085 39.1 11.9 115 106-223 65-188 (657)
441 TIGR03032 conserved hypothetic 72.9 39 0.00085 37.5 11.6 108 133-248 189-317 (335)
442 PHA03098 kelch-like protein; P 72.4 1.2E+02 0.0025 35.6 16.5 126 92-223 312-467 (534)
443 PF12768 Rax2: Cortical protei 72.3 79 0.0017 34.5 13.9 114 129-245 16-146 (281)
444 KOG2247 WD40 repeat-containing 70.3 0.84 1.8E-05 52.4 -1.8 143 106-253 33-177 (615)
445 KOG4460 Nuclear pore complex, 70.2 29 0.00063 40.7 10.2 79 109-187 105-205 (741)
446 TIGR02276 beta_rpt_yvtn 40-res 70.1 22 0.00048 26.2 6.6 40 117-157 1-41 (42)
447 PLN00033 photosystem II stabil 70.1 1.9E+02 0.0041 33.2 16.9 135 78-217 247-396 (398)
448 KOG2247 WD40 repeat-containing 69.9 0.73 1.6E-05 52.9 -2.4 137 72-211 37-179 (615)
449 PF07995 GSDH: Glucose / Sorbo 68.1 40 0.00088 37.3 10.9 105 151-258 3-136 (331)
450 PF14655 RAB3GAP2_N: Rab3 GTPa 67.8 61 0.0013 37.3 12.4 89 112-201 6-118 (415)
451 PHA03098 kelch-like protein; P 67.6 82 0.0018 36.9 13.9 126 92-222 359-513 (534)
452 PF07569 Hira: TUP1-like enhan 66.7 40 0.00086 35.3 9.9 67 115-183 18-98 (219)
453 PF11715 Nup160: Nucleoporin N 65.6 22 0.00048 41.9 8.7 73 117-189 156-257 (547)
454 KOG1916 Nuclear protein, conta 65.4 5.9 0.00013 48.7 3.7 112 110-224 186-327 (1283)
455 PF10214 Rrn6: RNA polymerase 63.2 98 0.0021 38.4 13.9 112 109-222 147-278 (765)
456 TIGR02276 beta_rpt_yvtn 40-res 63.2 27 0.00059 25.6 5.9 39 161-199 3-41 (42)
457 KOG1916 Nuclear protein, conta 62.3 8.9 0.00019 47.2 4.4 103 82-185 196-328 (1283)
458 PF14269 Arylsulfotran_2: Aryl 59.5 2.7E+02 0.0059 30.5 15.9 70 110-180 146-220 (299)
459 PF14727 PHTB1_N: PTHB1 N-term 59.4 3.3E+02 0.0072 31.5 18.9 139 80-219 36-203 (418)
460 PF08728 CRT10: CRT10; InterP 58.8 1E+02 0.0022 37.9 12.5 109 109-219 102-245 (717)
461 COG5167 VID27 Protein involved 58.4 98 0.0021 36.5 11.5 134 86-221 485-633 (776)
462 KOG4441 Proteins containing BT 57.7 1.8E+02 0.0039 35.0 14.3 141 80-224 332-503 (571)
463 KOG1520 Predicted alkaloid syn 57.5 3.4E+02 0.0073 31.0 15.9 178 72-253 67-282 (376)
464 TIGR03118 PEPCTERM_chp_1 conse 57.5 2E+02 0.0044 32.0 13.2 113 109-222 24-172 (336)
465 PF12768 Rax2: Cortical protei 54.7 2E+02 0.0044 31.4 12.9 96 89-185 14-128 (281)
466 PF12657 TFIIIC_delta: Transcr 54.6 72 0.0016 31.8 8.9 30 192-221 86-122 (173)
467 PF11715 Nup160: Nucleoporin N 54.1 26 0.00056 41.3 6.5 40 108-147 215-258 (547)
468 PRK13615 lipoprotein LpqB; Pro 53.8 3.1E+02 0.0068 32.9 15.3 138 111-253 337-487 (557)
469 COG4590 ABC-type uncharacteriz 52.0 88 0.0019 36.4 9.7 145 77-223 228-389 (733)
470 PF07250 Glyoxal_oxid_N: Glyox 51.6 1E+02 0.0022 33.0 9.9 129 131-261 48-198 (243)
471 COG1506 DAP2 Dipeptidyl aminop 48.8 3.6E+02 0.0078 32.6 15.2 144 102-255 54-235 (620)
472 COG1520 FOG: WD40-like repeat 48.6 3.8E+02 0.0082 29.8 14.4 108 80-190 67-181 (370)
473 PF02333 Phytase: Phytase; In 47.5 4.9E+02 0.011 29.8 18.8 174 81-255 68-279 (381)
474 PF10168 Nup88: Nuclear pore c 46.7 2.1E+02 0.0045 35.5 12.7 72 150-223 85-182 (717)
475 KOG3616 Selective LIM binding 46.2 1.8E+02 0.0039 35.8 11.4 109 106-219 13-125 (1636)
476 smart00020 Tryp_SPc Trypsin-li 46.0 22 0.00047 35.8 3.7 71 636-718 29-111 (229)
477 COG1520 FOG: WD40-like repeat 46.0 1.7E+02 0.0037 32.5 11.1 72 118-192 68-141 (370)
478 PF14727 PHTB1_N: PTHB1 N-term 45.6 5.4E+02 0.012 29.8 15.2 139 118-261 36-200 (418)
479 PHA02790 Kelch-like protein; P 43.8 3.6E+02 0.0078 31.4 13.8 134 80-222 318-472 (480)
480 PF03088 Str_synth: Strictosid 43.3 69 0.0015 28.9 6.0 46 168-213 33-78 (89)
481 PF03022 MRJP: Major royal jel 43.3 4.7E+02 0.01 28.4 18.8 167 91-259 45-259 (287)
482 COG5290 IkappaB kinase complex 41.3 2E+02 0.0044 35.7 10.9 93 152-248 249-349 (1243)
483 PF07676 PD40: WD40-like Beta 39.8 56 0.0012 23.9 4.2 33 102-134 3-38 (39)
484 PLN02153 epithiospecifier prot 38.1 5.7E+02 0.012 28.0 15.3 65 118-186 137-231 (341)
485 PF07250 Glyoxal_oxid_N: Glyox 37.6 71 0.0015 34.2 6.1 83 174-256 48-138 (243)
486 TIGR02171 Fb_sc_TIGR02171 Fibr 36.3 1.9E+02 0.004 36.6 9.9 80 171-252 328-415 (912)
487 smart00564 PQQ beta-propeller 34.9 81 0.0018 21.9 4.2 25 121-145 8-32 (33)
488 PRK13614 lipoprotein LpqB; Pro 34.4 8.2E+02 0.018 29.6 14.8 140 109-254 344-504 (573)
489 TIGR03548 mutarot_permut cycli 34.0 5.7E+02 0.012 27.7 12.7 50 91-140 139-197 (323)
490 PF10584 Proteasome_A_N: Prote 32.9 17 0.00036 24.8 0.3 9 572-580 7-15 (23)
491 KOG1898 Splicing factor 3b, su 32.5 9.4E+02 0.02 31.2 14.9 166 92-260 854-1046(1205)
492 COG4257 Vgb Streptogramin lyas 31.9 2.5E+02 0.0054 30.9 8.9 101 151-252 63-164 (353)
493 PHA02790 Kelch-like protein; P 31.4 8.9E+02 0.019 28.2 14.9 100 117-222 317-425 (480)
494 KOG3616 Selective LIM binding 31.3 79 0.0017 38.7 5.5 100 149-251 14-113 (1636)
495 COG3823 Glutamine cyclotransfe 30.4 6.5E+02 0.014 26.8 11.3 123 82-209 103-247 (262)
496 PF04651 Pox_A12: Poxvirus A12 30.3 33 0.00072 34.7 2.0 21 722-742 115-136 (189)
497 cd00190 Tryp_SPc Trypsin-like 29.3 49 0.0011 33.0 3.2 75 636-721 28-114 (232)
498 PRK13613 lipoprotein LpqB; Pro 28.9 1.1E+03 0.024 28.6 15.6 140 109-253 364-524 (599)
499 smart00036 CNH Domain found in 28.0 7.7E+02 0.017 26.9 12.4 59 118-180 12-73 (302)
500 PF01011 PQQ: PQQ enzyme repea 27.9 1.3E+02 0.0028 22.3 4.4 26 121-146 2-27 (38)
No 1
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=100.00 E-value=1.1e-32 Score=293.07 Aligned_cols=310 Identities=18% Similarity=0.221 Sum_probs=258.9
Q ss_pred CCCCCCCcceecccccccccCCCccCcceeecccccceecCCcceEEEEEEcCCCEEEEEeCCCeEEEEeCCCCCCCCCC
Q 004217 28 SNHRNSRLRNVFGLLAQREVAPRTKHSSKRLLGETARKCSGSFSQIFEAGRDARRGLASWVEAESLHHLRPKYCPLSPPP 107 (767)
Q Consensus 28 ~~~r~sk~rnVf~~~~kre~~~~~~~~sk~~wd~~~~~~~~s~s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~L~gH~ 107 (767)
+-.|.|||||||++..|++.||.+.++++..||.+.+..|+.|-+++.-.+-+|.+++- .-.++.-.|.....+.||+
T Consensus 4 ~~vR~SKfRHVFgq~~K~e~CYddIrVs~~tWDS~fcavNPkfiAvi~easgGgaf~Vi--Pl~k~Gr~d~~~P~v~GHt 81 (472)
T KOG0303|consen 4 HVVRSSKFRHVFGQPVKNDQCYDDIRVSRVTWDSSFCAVNPKFVAVIIEASGGGAFLVI--PLVKTGRMDASYPLVCGHT 81 (472)
T ss_pred hhhhhhhhHHHhccccchhhhhcceeeeeeeccccccccCCceEEEEEecCCCcceeec--ccccccccCCCCCCccCcc
Confidence 34789999999999999999999999999999999988886664444444333333332 3344444566666788999
Q ss_pred CCeEEEEECC-CCCeEEEEeCCCeEEEEECCCC-------eEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEEC
Q 004217 108 RSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTG-------SCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNA 179 (767)
Q Consensus 108 ~sVtsVaFSp-DG~~LASgs~DGtVrVWDl~tg-------~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl 179 (767)
+.|.+++|+| +...||+|+.|.+|+||++..+ +++..|.||...|--++|||.-.+.|+|++.|.+|.+||+
T Consensus 82 ~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv 161 (472)
T KOG0303|consen 82 APVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNV 161 (472)
T ss_pred ccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEec
Confidence 9999999999 8889999999999999998654 4577889999999999999988899999999999999999
Q ss_pred CCCeEEEeecCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCC
Q 004217 180 STAECIGSRDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVND 258 (767)
Q Consensus 180 ~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgsvwd 258 (767)
.+++.+..+.|...|.++.|+-||.+|++++.|+ |+|||.++++.+. ....|.+.-
T Consensus 162 ~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~---e~~~heG~k-------------------- 218 (472)
T KOG0303|consen 162 GTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVS---EGVAHEGAK-------------------- 218 (472)
T ss_pred cCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEee---ecccccCCC--------------------
Confidence 9999999999999999999999999999999766 9999999998655 223342210
Q ss_pred cCCCCcceeEeecCCCccCCCCeEEEecCCCCCCCceeeccCCCCCCceeeEEecCCCEEEEeecCCCCCCccccccccc
Q 004217 259 LDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRS 338 (767)
Q Consensus 259 l~s~~~~~~l~t~sG~~~~p~~~v~l~~~~Ssd~~~L~sg~~~~slpil~psFSpDg~rIva~~~~~d~Gs~~~~~~~~s 338 (767)
+.+++++.+ ..++..+||.-+.|.++.|+..++..+.+-+++|.
T Consensus 219 -------------------~~Raifl~~-----------------g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDt 262 (472)
T KOG0303|consen 219 -------------------PARAIFLAS-----------------GKIFTTGFSRMSERQIALWDPNNLEEPIALQELDT 262 (472)
T ss_pred -------------------cceeEEecc-----------------CceeeeccccccccceeccCcccccCcceeEEecc
Confidence 223333322 11334567788888888999999999999999999
Q ss_pred CCceeeeeccCCCCceeeeeccCCCCCCCCCCCCCCccccccccccCCcccccccccccc
Q 004217 339 SSSVRLLTYSTPSGQYELVLSPIASNRSSPMPDGTGTDSFVSEIDGALPQAAIGAVGTLD 398 (767)
Q Consensus 339 s~~~~l~~~~~~~~q~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (767)
|+++.++|||+++.--+++-..+...|||+..++.|+.||++.|.+..||++|+.||..-
T Consensus 263 SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQRG~g~mPKRG 322 (472)
T KOG0303|consen 263 SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQRGMGFMPKRG 322 (472)
T ss_pred CCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccCCcccccccccccc
Confidence 999999999999998888888888889999999999999999999999999999999765
No 2
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=2.4e-26 Score=246.64 Aligned_cols=196 Identities=24% Similarity=0.326 Sum_probs=170.7
Q ss_pred eEEEEEEcC--CCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEE
Q 004217 72 QIFEAGRDA--RRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL 145 (767)
Q Consensus 72 ~~~vA~sd~--g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L 145 (767)
...+.+.+. +..+++++.||++++|++.+. .|.+|...|..++|+|+|++|++++.|.+-++||++++..+...
T Consensus 220 v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~Q 299 (459)
T KOG0272|consen 220 VGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQ 299 (459)
T ss_pred eeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhh
Confidence 444445443 779999999999999999884 58899999999999999999999999999999999999999889
Q ss_pred ccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec-CCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCc
Q 004217 146 HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGHK-LYIWRYNMRE 223 (767)
Q Consensus 146 ~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~-h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~ 223 (767)
.||...|.+++|+| ++.+++||+.|..-+|||+++++++..+. |..+|.+|+|+|+|..||+|+.|. ++|||++...
T Consensus 300 EGHs~~v~~iaf~~-DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~ 378 (459)
T KOG0272|consen 300 EGHSKGVFSIAFQP-DGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRS 378 (459)
T ss_pred cccccccceeEecC-CCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccc
Confidence 99999999999999 99999999999999999999999998875 999999999999999999999655 9999999988
Q ss_pred cccCCeEEecCCCCeEEEEEccCCCeEEEEEe------eCCcCCCCcceeEeecCCC
Q 004217 224 ETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE------VNDLDSSESSLTLATSPGY 274 (767)
Q Consensus 224 ~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs------vwdl~s~~~~~~l~t~sG~ 274 (767)
.+. .+.+|.+-|+.|.|+|+..++++|++ +|.-+.|.. +.++.||
T Consensus 379 ~ly---~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~---~ksLaGH 429 (459)
T KOG0272|consen 379 ELY---TIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSP---LKSLAGH 429 (459)
T ss_pred cce---ecccccchhhheEecccCCeEEEEcccCcceeeecCCCccc---chhhcCC
Confidence 755 88999999999999996666666665 554444443 4444455
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=4e-26 Score=244.90 Aligned_cols=200 Identities=23% Similarity=0.241 Sum_probs=178.1
Q ss_pred cceEEEEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCC--CCeEEEEeCCCeEEEEECCCCeEEE
Q 004217 70 FSQIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPD--GKTLASTHGDHTVKIIDCQTGSCLK 143 (767)
Q Consensus 70 ~s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpD--G~~LASgs~DGtVrVWDl~tg~~l~ 143 (767)
.......++.++..|++++.+|.+++|+...+ +|.+|+..|.++.|+|. +..||+|+.||+|++|++.+...+.
T Consensus 176 rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~ 255 (459)
T KOG0272|consen 176 RPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQ 255 (459)
T ss_pred CcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchh
Confidence 33556667889999999999999999999887 57899999999999995 6789999999999999999989999
Q ss_pred EEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEe-ecCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCC
Q 004217 144 VLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-RDFYRPIASIAFHASGELLAVASGHK-LYIWRYNM 221 (767)
Q Consensus 144 ~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~-l~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t 221 (767)
.|.+|...|..++||| ++++|+|++.|.+-++||++++..+.. -+|...|.+++|++||.++++|+-|. -+|||+++
T Consensus 256 ~l~gH~~RVs~VafHP-sG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRt 334 (459)
T KOG0272|consen 256 DLEGHLARVSRVAFHP-SGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRT 334 (459)
T ss_pred hhhcchhhheeeeecC-CCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeeccc
Confidence 9999999999999999 999999999999999999999877665 46999999999999999999999776 89999999
Q ss_pred CccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEeecCCCcc
Q 004217 222 REETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYWR 276 (767)
Q Consensus 222 ~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s~~~~~~l~t~sG~~~ 276 (767)
+..+. .+.+|...|.+|+|+|+|..|+++++ +||++.... +.+..+|.+
T Consensus 335 gr~im---~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~---ly~ipAH~n 388 (459)
T KOG0272|consen 335 GRCIM---FLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSE---LYTIPAHSN 388 (459)
T ss_pred CcEEE---EecccccceeeEeECCCceEEeecCCCCcEEEeeeccccc---ceecccccc
Confidence 99766 88999999999999999998777544 999986555 445555544
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.3e-25 Score=238.28 Aligned_cols=261 Identities=16% Similarity=0.228 Sum_probs=200.8
Q ss_pred ceEEEEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEE-EEE
Q 004217 71 SQIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCL-KVL 145 (767)
Q Consensus 71 s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l-~~L 145 (767)
..+++.++.++..|++|+.|.++|+||+.+. +.++|..-|.|++|+|||+.||+|+.||+|++||.++|+++ ..|
T Consensus 117 ~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l 196 (480)
T KOG0271|consen 117 AVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRAL 196 (480)
T ss_pred cEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccc
Confidence 3788889999999999999999999999887 47899999999999999999999999999999999998765 789
Q ss_pred ccCCCCcEEEEEccC----CCcEEEEEeCCCeEEEEECCCCeEEEee-cCCCCeEEEEEcCCCCEEEEEECCc-EEEEEc
Q 004217 146 HGHRRTPWVVRFHPL----NPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASGHK-LYIWRY 219 (767)
Q Consensus 146 ~gH~~~V~sLafsP~----dg~lLaSgS~DGtVrIWDl~tg~~i~~l-~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl 219 (767)
.+|+..|++++|.|. ..++|++++.||+|+|||+..++++..+ +|..+|+|+.|--+| +|++|+.|+ |++|+.
T Consensus 197 ~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a 275 (480)
T KOG0271|consen 197 RGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRA 275 (480)
T ss_pred cCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEecCCCceEEEEEc
Confidence 999999999999873 4579999999999999999999998885 699999999997554 899999766 999999
Q ss_pred CCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCCcCC---------------------CCcceeEeecCCCccCC
Q 004217 220 NMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDS---------------------SESSLTLATSPGYWRYP 278 (767)
Q Consensus 220 ~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgsvwdl~s---------------------~~~~~~l~t~sG~~~~p 278 (767)
..+...+ .+.+|...|+.++.+-|- .+-++....... .....++....++
T Consensus 276 ~dG~~~r---~lkGHahwvN~lalsTdy--~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~---- 346 (480)
T KOG0271|consen 276 LDGKLCR---ELKGHAHWVNHLALSTDY--VLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDF---- 346 (480)
T ss_pred cchhHHH---hhcccchheeeeeccchh--hhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCc----
Confidence 9988765 889999999999988542 233332111100 0001122222222
Q ss_pred CCeEEEecCCCCC-CCceeeccCCCCCCceeeEEecCCCEEEEeecCCCCCCcccccccccCCceeeeeccCCCCceeee
Q 004217 279 PPVICMAGAHSSS-HPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQYELV 357 (767)
Q Consensus 279 ~~~v~l~~~~Ssd-~~~L~sg~~~~slpil~psFSpDg~rIva~~~~~d~Gs~~~~~~~~ss~~~~l~~~~~~~~q~~~~ 357 (767)
.+++|+..... .+.-.+| ...-+..+.||||+++|+. .|....+..|+-.+||+-..
T Consensus 347 --tlflW~p~~~kkpi~rmtg---Hq~lVn~V~fSPd~r~IAS-----------------aSFDkSVkLW~g~tGk~las 404 (480)
T KOG0271|consen 347 --TLFLWNPFKSKKPITRMTG---HQALVNHVSFSPDGRYIAS-----------------ASFDKSVKLWDGRTGKFLAS 404 (480)
T ss_pred --eEEEecccccccchhhhhc---hhhheeeEEECCCccEEEE-----------------eecccceeeeeCCCcchhhh
Confidence 46666633221 1111122 2223336999999999996 35556789999999999988
Q ss_pred ec-cCCC
Q 004217 358 LS-PIAS 363 (767)
Q Consensus 358 ~~-p~~p 363 (767)
+. .+++
T Consensus 405 fRGHv~~ 411 (480)
T KOG0271|consen 405 FRGHVAA 411 (480)
T ss_pred hhhccce
Confidence 87 5653
No 5
>PTZ00421 coronin; Provisional
Probab=99.93 E-value=5.6e-24 Score=243.38 Aligned_cols=283 Identities=17% Similarity=0.183 Sum_probs=199.1
Q ss_pred CCCcceecccccccccCCCccCcceeecc-cccceecCCcceEEEEEEcCCCEEEEE-eCCCeEEEEeCCCCCCCCCCCC
Q 004217 32 NSRLRNVFGLLAQREVAPRTKHSSKRLLG-ETARKCSGSFSQIFEAGRDARRGLASW-VEAESLHHLRPKYCPLSPPPRS 109 (767)
Q Consensus 32 ~sk~rnVf~~~~kre~~~~~~~~sk~~wd-~~~~~~~~s~s~~~vA~sd~g~~LaSg-s~DgsIrlWd~~t~~L~gH~~s 109 (767)
.|||||||+...+++.++.+.++....|+ .+...++..+.++ .+...|...+.. .+.|.+ ......+.+|.+.
T Consensus 3 ~sk~rh~~g~~~k~~~~~~~i~~~~~~~d~~~~~~~n~~~~a~--~w~~~gg~~v~~~~~~G~~---~~~~~~l~GH~~~ 77 (493)
T PTZ00421 3 VSRFRHTQGVPARPDRHFLNVTPSTALWDCSNTIACNDRFIAV--PWQQLGSTAVLKHTDYGKL---ASNPPILLGQEGP 77 (493)
T ss_pred cccccccccccCCcccceeccccccccCCCCCcEeECCceEEE--EEecCCceEEeeccccccC---CCCCceEeCCCCC
Confidence 58999999999999999999999999999 5556666333221 121122221111 111110 0111236789999
Q ss_pred eEEEEECC-CCCeEEEEeCCCeEEEEECCCC-------eEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCC
Q 004217 110 TIAAAFSP-DGKTLASTHGDHTVKIIDCQTG-------SCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST 181 (767)
Q Consensus 110 VtsVaFSp-DG~~LASgs~DGtVrVWDl~tg-------~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~t 181 (767)
|.+++|+| ++++|++|+.|++|+|||+.++ +.+..+.+|...|.+++|+|.+.++|++++.|++|+|||+.+
T Consensus 78 V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~t 157 (493)
T PTZ00421 78 IIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVER 157 (493)
T ss_pred EEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCC
Confidence 99999999 8999999999999999999765 356788999999999999995567999999999999999999
Q ss_pred CeEEEeec-CCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccCCeEEecCCCC-eEEEEEccCCCeEEEEEeeCC
Q 004217 182 AECIGSRD-FYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRS-LRAVHFHPHAAPLLLTAEVND 258 (767)
Q Consensus 182 g~~i~~l~-h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~-VtsVaFSPDG~~LlaSgsvwd 258 (767)
++.+..+. |...|.+++|+|+|.+|++++.|+ |+|||+++++.+. .+..|... +..+.|.+++..+++++...
T Consensus 158 g~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~---tl~~H~~~~~~~~~w~~~~~~ivt~G~s~- 233 (493)
T PTZ00421 158 GKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVS---SVEAHASAKSQRCLWAKRKDLIITLGCSK- 233 (493)
T ss_pred CeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEE---EEecCCCCcceEEEEcCCCCeEEEEecCC-
Confidence 98887765 888999999999999999999666 9999999887644 56677654 45788999988777665210
Q ss_pred cCCCCcceeEeecCCCccCCCCeEEEecCCCCCCCceeeccCCCCCCceeeEEecCCCEEEEeecCCCCCCccccccccc
Q 004217 259 LDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRS 338 (767)
Q Consensus 259 l~s~~~~~~l~t~sG~~~~p~~~v~l~~~~Ssd~~~L~sg~~~~slpil~psFSpDg~rIva~~~~~d~Gs~~~~~~~~s 338 (767)
...+.+.+|+....... +.....+.....+.+.|++|+..+++...
T Consensus 234 ------------------s~Dr~VklWDlr~~~~p-~~~~~~d~~~~~~~~~~d~d~~~L~lggk--------------- 279 (493)
T PTZ00421 234 ------------------SQQRQIMLWDTRKMASP-YSTVDLDQSSALFIPFFDEDTNLLYIGSK--------------- 279 (493)
T ss_pred ------------------CCCCeEEEEeCCCCCCc-eeEeccCCCCceEEEEEcCCCCEEEEEEe---------------
Confidence 00123444443221111 11111112233457889999999887221
Q ss_pred CCceeeeeccCCCCceeeee
Q 004217 339 SSSVRLLTYSTPSGQYELVL 358 (767)
Q Consensus 339 s~~~~l~~~~~~~~q~~~~~ 358 (767)
....+.+||..+++...++
T Consensus 280 -gDg~Iriwdl~~~~~~~~~ 298 (493)
T PTZ00421 280 -GEGNIRCFELMNERLTFCS 298 (493)
T ss_pred -CCCeEEEEEeeCCceEEEe
Confidence 1234778888776655443
No 6
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=8.3e-25 Score=232.29 Aligned_cols=264 Identities=21% Similarity=0.257 Sum_probs=204.1
Q ss_pred CCCccCcceeecccccc----eecC-CcceEEEEEEcCCCEEEEEeCCCeEEEEeCCCC-----CCCCCCCCeEEEEECC
Q 004217 48 APRTKHSSKRLLGETAR----KCSG-SFSQIFEAGRDARRGLASWVEAESLHHLRPKYC-----PLSPPPRSTIAAAFSP 117 (767)
Q Consensus 48 ~~~~~~~sk~~wd~~~~----~~~~-s~s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~-----~L~gH~~sVtsVaFSp 117 (767)
.........++||-... .|.+ ..=+++++++.+++.|++|+.||+|++||.+++ .|.+|+..|++++|-|
T Consensus 131 ~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep 210 (480)
T KOG0271|consen 131 VTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEP 210 (480)
T ss_pred EecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecc
Confidence 34555667889986532 2322 223889999999999999999999999999887 4889999999999976
Q ss_pred -----CCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec-CC
Q 004217 118 -----DGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FY 191 (767)
Q Consensus 118 -----DG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~-h~ 191 (767)
..++||+++.||.|+|||+..++++..+.||+..|+|++|- +..++++|+.|++|++|+...|.+.+++. |.
T Consensus 211 ~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwG--G~gliySgS~DrtIkvw~a~dG~~~r~lkGHa 288 (480)
T KOG0271|consen 211 LHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWG--GEGLIYSGSQDRTIKVWRALDGKLCRELKGHA 288 (480)
T ss_pred cccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEc--CCceEEecCCCceEEEEEccchhHHHhhcccc
Confidence 67899999999999999999999999999999999999995 37899999999999999999999988864 78
Q ss_pred CCeEEEEEc-----------CCCCE-------------------------EEEEECCc-EEEEEcCCCccccCCeEEecC
Q 004217 192 RPIASIAFH-----------ASGEL-------------------------LAVASGHK-LYIWRYNMREETSSPRIVLRT 234 (767)
Q Consensus 192 ~~VtsVafS-----------PdG~~-------------------------LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h 234 (767)
..|+.++.+ |.++. |++|+||. +.+|+-...+. +...+.+|
T Consensus 289 hwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kk--pi~rmtgH 366 (480)
T KOG0271|consen 289 HWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKK--PITRMTGH 366 (480)
T ss_pred hheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccccccc--chhhhhch
Confidence 888877655 44444 99999877 99998765543 33478899
Q ss_pred CCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEeecCCCccCCCCeEEEecCCCCCCCceeeccCCCCC-----
Q 004217 235 RRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITP----- 304 (767)
Q Consensus 235 ~~~VtsVaFSPDG~~LlaSgs-----vwdl~s~~~~~~l~t~sG~~~~p~~~v~l~~~~Ssd~~~L~sg~~~~sl----- 304 (767)
..-|+.+.||||++++++++= .|+.++++ .+.++.||+. .+..++- +.|...+.+++.+.++
T Consensus 367 q~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk---~lasfRGHv~---~VYqvaw--saDsRLlVS~SkDsTLKvw~V 438 (480)
T KOG0271|consen 367 QALVNHVSFSPDGRYIASASFDKSVKLWDGRTGK---FLASFRGHVA---AVYQVAW--SADSRLLVSGSKDSTLKVWDV 438 (480)
T ss_pred hhheeeEEECCCccEEEEeecccceeeeeCCCcc---hhhhhhhccc---eeEEEEe--ccCccEEEEcCCCceEEEEEe
Confidence 999999999999997666542 66666554 4666777754 2222222 3344444455444443
Q ss_pred --------------CceeeEEecCCCEEEEeec
Q 004217 305 --------------PFLRPSFVRDDERISLQHT 323 (767)
Q Consensus 305 --------------pil~psFSpDg~rIva~~~ 323 (767)
.++.+-|+|||.+++.++.
T Consensus 439 ~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggk 471 (480)
T KOG0271|consen 439 RTKKLKQDLPGHADEVFAVDWSPDGQRVASGGK 471 (480)
T ss_pred eeeeecccCCCCCceEEEEEecCCCceeecCCC
Confidence 4556678899988886433
No 7
>PTZ00420 coronin; Provisional
Probab=99.93 E-value=6.1e-24 Score=245.30 Aligned_cols=212 Identities=16% Similarity=0.185 Sum_probs=167.9
Q ss_pred CCCcceecccccccccCCCccCcceeecccccceecCCcceEEEEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCC
Q 004217 32 NSRLRNVFGLLAQREVAPRTKHSSKRLLGETARKCSGSFSQIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPP 107 (767)
Q Consensus 32 ~sk~rnVf~~~~kre~~~~~~~~sk~~wd~~~~~~~~s~s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~ 107 (767)
-++|||+|+... +.+|.+.+...+.|+.....++..+.++ .+.-. .|+.++.|++|+.... .+.+|.
T Consensus 4 ~~~~~~~~~~~~--~~~y~diri~~~~~~s~~ia~n~~~~A~--~w~~~-----gGG~~gvI~L~~~~r~~~v~~L~gH~ 74 (568)
T PTZ00420 4 VPLIKNLYPDPS--NNLFDDLRICSRVIDSCGIACSSGFVAV--PWEVE-----GGGLIGAIRLENQMRKPPVIKLKGHT 74 (568)
T ss_pred cchhhhcCCchh--hCeeccEEccccccCceeEeeCCCeEEE--EEEcC-----CCCceeEEEeeecCCCceEEEEcCCC
Confidence 389999999754 5668899988888988776666444222 11111 2556788999987654 478999
Q ss_pred CCeEEEEECCC-CCeEEEEeCCCeEEEEECCCCe--------EEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEE
Q 004217 108 RSTIAAAFSPD-GKTLASTHGDHTVKIIDCQTGS--------CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWN 178 (767)
Q Consensus 108 ~sVtsVaFSpD-G~~LASgs~DGtVrVWDl~tg~--------~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWD 178 (767)
+.|.+++|+|+ +.+|++|+.|++|+|||+.++. .+..+.+|...|.+++|+|.+..++++++.|++|+|||
T Consensus 75 ~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWD 154 (568)
T PTZ00420 75 SSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWD 154 (568)
T ss_pred CCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEE
Confidence 99999999996 8899999999999999997642 34567899999999999994445678999999999999
Q ss_pred CCCCeEEEeecCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccCCeEEecCCCCeEE-----EEEccCCCeEEE
Q 004217 179 ASTAECIGSRDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRA-----VHFHPHAAPLLL 252 (767)
Q Consensus 179 l~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~Vts-----VaFSPDG~~Lla 252 (767)
+++++.+..+.+...|.+++|+|+|.+|++++.++ |+|||+++++.+. .+.+|.+.+.. ..|++++.+|++
T Consensus 155 l~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~---tl~gH~g~~~s~~v~~~~fs~d~~~IlT 231 (568)
T PTZ00420 155 IENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIAS---SFHIHDGGKNTKNIWIDGLGGDDNYILS 231 (568)
T ss_pred CCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEE---EEecccCCceeEEEEeeeEcCCCCEEEE
Confidence 99998887777788999999999999999988555 9999999987654 56778765433 345688888887
Q ss_pred EEe
Q 004217 253 TAE 255 (767)
Q Consensus 253 Sgs 255 (767)
++.
T Consensus 232 tG~ 234 (568)
T PTZ00420 232 TGF 234 (568)
T ss_pred EEc
Confidence 763
No 8
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.92 E-value=1.6e-24 Score=246.83 Aligned_cols=186 Identities=23% Similarity=0.300 Sum_probs=171.0
Q ss_pred eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEcc
Q 004217 72 QIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHG 147 (767)
Q Consensus 72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~g 147 (767)
+.-..++.+.++|+++++|.++|+|.+.+. .++||..+|+++.|+|.|-++||++.|++.++|.....++++.|.+
T Consensus 454 Vyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifag 533 (707)
T KOG0263|consen 454 VYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAG 533 (707)
T ss_pred eeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcc
Confidence 333567789999999999999999999986 4779999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEee-cCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccc
Q 004217 148 HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREET 225 (767)
Q Consensus 148 H~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l-~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~ 225 (767)
|-..|.|+.||| +.+++++||.|.+||+||+.+|..++.+ +|.++|.+++|+|+|++|++|+.++ |++||+.+++.+
T Consensus 534 hlsDV~cv~FHP-Ns~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v 612 (707)
T KOG0263|consen 534 HLSDVDCVSFHP-NSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLV 612 (707)
T ss_pred cccccceEEECC-cccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcch
Confidence 999999999999 9999999999999999999999999996 5999999999999999999999777 999999999876
Q ss_pred cCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCcCC
Q 004217 226 SSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDS 261 (767)
Q Consensus 226 ~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s 261 (767)
. .+.+|.+.|+++.||.||..|++++. +||+..
T Consensus 613 ~---~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 613 K---QLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred h---hhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 6 78899999999999999997777665 666553
No 9
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.92 E-value=1.5e-24 Score=247.04 Aligned_cols=236 Identities=21% Similarity=0.274 Sum_probs=200.9
Q ss_pred CCcceEEEEEEcCCCEEEEEeCCCeEEEEeCCCC-----------------------------------CCCCCCCCeEE
Q 004217 68 GSFSQIFEAGRDARRGLASWVEAESLHHLRPKYC-----------------------------------PLSPPPRSTIA 112 (767)
Q Consensus 68 ~s~s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~-----------------------------------~L~gH~~sVts 112 (767)
......+..++++...|+.|-.|..|++|.+... ++.+|.++|..
T Consensus 377 t~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg 456 (707)
T KOG0263|consen 377 TYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYG 456 (707)
T ss_pred cCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceee
Confidence 3345788889999999999999999999998620 25599999999
Q ss_pred EEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEee-cCC
Q 004217 113 AAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFY 191 (767)
Q Consensus 113 VaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l-~h~ 191 (767)
+.|+||.++|++|+.|++||+|.+.+..++..++||..+|+.++|+| .+.+|+|++.|++.++|......+.+.+ +|.
T Consensus 457 ~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P-~GyYFatas~D~tArLWs~d~~~PlRifaghl 535 (707)
T KOG0263|consen 457 CSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAP-RGYYFATASHDQTARLWSTDHNKPLRIFAGHL 535 (707)
T ss_pred eeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecC-CceEEEecCCCceeeeeecccCCchhhhcccc
Confidence 99999999999999999999999999999999999999999999999 8999999999999999999998888885 599
Q ss_pred CCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcc
Q 004217 192 RPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESS 265 (767)
Q Consensus 192 ~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s~~~~ 265 (767)
..|.|+.|||+..|+++||.|+ |++||+.++..++ .+.+|.++|.+|+|||+|++|++++. +||+..+...
T Consensus 536 sDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VR---iF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v 612 (707)
T KOG0263|consen 536 SDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVR---IFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLV 612 (707)
T ss_pred cccceEEECCcccccccCCCCceEEEEEcCCCcEEE---EecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcch
Confidence 9999999999999999999777 9999999999766 88999999999999999998887765 6666644432
Q ss_pred eeEeecCCCccCCCCeEEEecCCCCCCCceeeccCCCCCCceeeEEecCCCEEEEeecCCCCCCcccccccccCCceeee
Q 004217 266 LTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLL 345 (767)
Q Consensus 266 ~~l~t~sG~~~~p~~~v~l~~~~Ssd~~~L~sg~~~~slpil~psFSpDg~rIva~~~~~d~Gs~~~~~~~~ss~~~~l~ 345 (767)
..+. || ..-+....||.||..+++ ++..+.+.
T Consensus 613 ~~l~---~H----------------------------t~ti~SlsFS~dg~vLas-----------------gg~DnsV~ 644 (707)
T KOG0263|consen 613 KQLK---GH----------------------------TGTIYSLSFSRDGNVLAS-----------------GGADNSVR 644 (707)
T ss_pred hhhh---cc----------------------------cCceeEEEEecCCCEEEe-----------------cCCCCeEE
Confidence 2222 22 222336789999999987 34556788
Q ss_pred eccCCCCcee
Q 004217 346 TYSTPSGQYE 355 (767)
Q Consensus 346 ~~~~~~~q~~ 355 (767)
+||......+
T Consensus 645 lWD~~~~~~~ 654 (707)
T KOG0263|consen 645 LWDLTKVIEL 654 (707)
T ss_pred EEEchhhccc
Confidence 8988765555
No 10
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.92 E-value=1.9e-23 Score=215.27 Aligned_cols=242 Identities=17% Similarity=0.168 Sum_probs=190.4
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCC---------CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCC
Q 004217 79 DARRGLASWVEAESLHHLRPKYC---------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHR 149 (767)
Q Consensus 79 d~g~~LaSgs~DgsIrlWd~~t~---------~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~ 149 (767)
.+...+++.+.|+++.+|++... .+.||...|..++.++||++.++++.|+++++||+.+++..+.|.||+
T Consensus 26 ~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~ 105 (315)
T KOG0279|consen 26 KNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHT 105 (315)
T ss_pred CCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecC
Confidence 46888999999999999998753 478999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec--CCCCeEEEEEcCC--CCEEEEEECCc-EEEEEcCCCcc
Q 004217 150 RTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD--FYRPIASIAFHAS--GELLAVASGHK-LYIWRYNMREE 224 (767)
Q Consensus 150 ~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~--h~~~VtsVafSPd--G~~LAsgSdd~-V~VWDl~t~~~ 224 (767)
..|.+++|++ |.+.++||+.|++|++||+.......... +...|+|+.|+|+ ..+|++++.|+ |++||+++.+.
T Consensus 106 ~dVlsva~s~-dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l 184 (315)
T KOG0279|consen 106 KDVLSVAFST-DNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQL 184 (315)
T ss_pred CceEEEEecC-CCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcch
Confidence 9999999999 99999999999999999998665544443 3789999999999 56899999777 99999999886
Q ss_pred ccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEeecCCCcc------------CCCCeEEEecC
Q 004217 225 TSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYWR------------YPPPVICMAGA 287 (767)
Q Consensus 225 ~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s~~~~~~l~t~sG~~~------------~p~~~v~l~~~ 287 (767)
.. .+.+|...++.+++||||...+.+++ .||++..+....+....-... ...+.+.+|+.
T Consensus 185 ~~---~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~at~~sIkIwdl 261 (315)
T KOG0279|consen 185 RT---TFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAATATSIKIWDL 261 (315)
T ss_pred hh---ccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecCCceeEeeccCCceEEEec
Confidence 55 78899999999999999995555444 999997776444432211100 12345677776
Q ss_pred CCCCCCce---e-ec--cCCCCCCceeeEEecCCCEEEEeecC
Q 004217 288 HSSSHPGL---A-EE--VPLITPPFLRPSFVRDDERISLQHTE 324 (767)
Q Consensus 288 ~Ssd~~~L---~-sg--~~~~slpil~psFSpDg~rIva~~~~ 324 (767)
.+.....- . .+ .......++..+|++||..+..+-.+
T Consensus 262 ~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td 304 (315)
T KOG0279|consen 262 ESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTD 304 (315)
T ss_pred cchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecC
Confidence 55432111 1 11 11123345689999999999984443
No 11
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.92 E-value=1.7e-23 Score=215.63 Aligned_cols=228 Identities=19% Similarity=0.197 Sum_probs=183.8
Q ss_pred EEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccC--
Q 004217 75 EAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGH-- 148 (767)
Q Consensus 75 vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH-- 148 (767)
++.+.++.+.++++.|+++++||+.++ +|.+|...|.+++|++|.+.|++|+.|.+|++||+... +..++..+
T Consensus 69 v~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~-ck~t~~~~~~ 147 (315)
T KOG0279|consen 69 VVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV-CKYTIHEDSH 147 (315)
T ss_pred eEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeeccc-EEEEEecCCC
Confidence 556679999999999999999999986 58899999999999999999999999999999998754 44444333
Q ss_pred CCCcEEEEEccCC-CcEEEEEeCCCeEEEEECCCCeEEEe-ecCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccc
Q 004217 149 RRTPWVVRFHPLN-PTIIASGSLDHEVRLWNASTAECIGS-RDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREET 225 (767)
Q Consensus 149 ~~~V~sLafsP~d-g~lLaSgS~DGtVrIWDl~tg~~i~~-l~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~ 225 (767)
++.|.+++|+|.. ..+|++++.|++|++||+++.+.... ++|.+.++.+++||||.++++|+.++ +.+||++.++.+
T Consensus 148 ~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~l 227 (315)
T KOG0279|consen 148 REWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNL 227 (315)
T ss_pred cCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCcee
Confidence 7899999999932 67999999999999999999888777 56999999999999999999999666 999999998864
Q ss_pred cCCeEEecCCCCeEEEEEccCCCeEEEEE----eeCCcCCCCcceeEee-cCCCccCCCCeEEEecCCCCCCCceeeccC
Q 004217 226 SSPRIVLRTRRSLRAVHFHPHAAPLLLTA----EVNDLDSSESSLTLAT-SPGYWRYPPPVICMAGAHSSSHPGLAEEVP 300 (767)
Q Consensus 226 ~~~~~l~~h~~~VtsVaFSPDG~~LlaSg----svwdl~s~~~~~~l~t-~sG~~~~p~~~v~l~~~~Ssd~~~L~sg~~ 300 (767)
. ...|...|.+++|+|+-.+|.++. .+||++.......+.. ..|.........++....+.|..+|..|..
T Consensus 228 y----sl~a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~t 303 (315)
T KOG0279|consen 228 Y----SLEAFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYT 303 (315)
T ss_pred E----eccCCCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeec
Confidence 4 678899999999999988766543 3999987665433321 112211223446666666888888888866
Q ss_pred CCCCCce
Q 004217 301 LITPPFL 307 (767)
Q Consensus 301 ~~slpil 307 (767)
+.-++.|
T Consensus 304 d~~irv~ 310 (315)
T KOG0279|consen 304 DNVIRVW 310 (315)
T ss_pred CCcEEEE
Confidence 6555555
No 12
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.91 E-value=1.4e-22 Score=230.43 Aligned_cols=193 Identities=29% Similarity=0.409 Sum_probs=167.3
Q ss_pred cceEEEEEEcCCCEEEEEeCCCeEEEEeCC------CCCCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEEC-CCCeEE
Q 004217 70 FSQIFEAGRDARRGLASWVEAESLHHLRPK------YCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDC-QTGSCL 142 (767)
Q Consensus 70 ~s~~~vA~sd~g~~LaSgs~DgsIrlWd~~------t~~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl-~tg~~l 142 (767)
.+..++.++.+|..+++++.++.+++|+.. ...+.+|...|.+++|+||+++|++++.|++|+|||+ ..+.++
T Consensus 160 ~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~ 239 (456)
T KOG0266|consen 160 PSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNL 239 (456)
T ss_pred CceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEE
Confidence 447778889999999999999999999993 3356799999999999999999999999999999999 556899
Q ss_pred EEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec-CCCCeEEEEEcCCCCEEEEEECCc-EEEEEcC
Q 004217 143 KVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGHK-LYIWRYN 220 (767)
Q Consensus 143 ~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~-h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~ 220 (767)
+++++|...|++++|+| .++++++|+.|++|+|||+++++++..+. |...|++++|+++|++|++++.|+ |+|||+.
T Consensus 240 ~~l~gH~~~v~~~~f~p-~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~ 318 (456)
T KOG0266|consen 240 KTLKGHSTYVTSVAFSP-DGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLE 318 (456)
T ss_pred EEecCCCCceEEEEecC-CCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECC
Confidence 99999999999999999 66999999999999999999999999875 888999999999999999998666 9999999
Q ss_pred CCccccCCeEEecCCC--CeEEEEEccCCCeEEEEEe-----eCCcCCCCc
Q 004217 221 MREETSSPRIVLRTRR--SLRAVHFHPHAAPLLLTAE-----VNDLDSSES 264 (767)
Q Consensus 221 t~~~~~~~~~l~~h~~--~VtsVaFSPDG~~LlaSgs-----vwdl~s~~~ 264 (767)
++... ....+..+.. .+++++|+|++.++++... +|++.....
T Consensus 319 ~~~~~-~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~ 368 (456)
T KOG0266|consen 319 TGSKL-CLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKS 368 (456)
T ss_pred CCcee-eeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcc
Confidence 98832 0123444433 5999999999999888765 666665444
No 13
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.90 E-value=4.6e-23 Score=220.65 Aligned_cols=199 Identities=19% Similarity=0.282 Sum_probs=173.6
Q ss_pred Ccceeeccccccee-----cCCcceEEEEEEcCCCEEEEEeCCCeEEEEeCCCC---CCCCCC-CCeEEEEECCCCCeEE
Q 004217 53 HSSKRLLGETARKC-----SGSFSQIFEAGRDARRGLASWVEAESLHHLRPKYC---PLSPPP-RSTIAAAFSPDGKTLA 123 (767)
Q Consensus 53 ~~sk~~wd~~~~~~-----~~s~s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~---~L~gH~-~sVtsVaFSpDG~~LA 123 (767)
...-.+|....+.. ..+..+..+..+.++..+++++.+|.|++|+.... .+..|. ..|++++|||+...++
T Consensus 117 SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~ 196 (464)
T KOG0284|consen 117 SGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFL 196 (464)
T ss_pred cccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHhhHhhhhhhheeccCCCCceeE
Confidence 34455666543221 13445778888999999999999999999999865 344555 9999999999999999
Q ss_pred EEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEee-cCCCCeEEEEEcCC
Q 004217 124 STHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHAS 202 (767)
Q Consensus 124 Sgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l-~h~~~VtsVafSPd 202 (767)
+|++|++|+|||....+....|.||.-.|.+++||| ...++++++.|..|++||.++++|+.++ .|+..|..+.|+|+
T Consensus 197 t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP-~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n 275 (464)
T KOG0284|consen 197 TCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHP-TKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPN 275 (464)
T ss_pred EecCCCeEEEEeccCCchhheeccCCCCcceeccCC-ccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCC
Confidence 999999999999999888889999999999999999 8899999999999999999999999985 58999999999999
Q ss_pred CCEEEEEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217 203 GELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (767)
Q Consensus 203 G~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs 255 (767)
+++|++++.|. ++++|+++.+++. .+.+|+..|+++.|+|-..-|+++++
T Consensus 276 ~N~Llt~skD~~~kv~DiR~mkEl~---~~r~Hkkdv~~~~WhP~~~~lftsgg 326 (464)
T KOG0284|consen 276 GNWLLTGSKDQSCKVFDIRTMKELF---TYRGHKKDVTSLTWHPLNESLFTSGG 326 (464)
T ss_pred CCeeEEccCCceEEEEehhHhHHHH---Hhhcchhhheeeccccccccceeecc
Confidence 99999999877 9999999777655 78899999999999998887888765
No 14
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.90 E-value=5.8e-22 Score=205.29 Aligned_cols=226 Identities=19% Similarity=0.196 Sum_probs=190.7
Q ss_pred eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC----------CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeE
Q 004217 72 QIFEAGRDARRGLASWVEAESLHHLRPKYC----------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSC 141 (767)
Q Consensus 72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----------~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~ 141 (767)
+...|+++.+..++.|.-|+...+|++.+. ++.+|++-+.|+.|-.| .+|++++.|.++-+||+++|+.
T Consensus 100 VMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~ 178 (343)
T KOG0286|consen 100 VMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQ 178 (343)
T ss_pred EEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccceE
Confidence 556678899999999999999999999854 48899999999999985 5788999999999999999999
Q ss_pred EEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec-CCCCeEEEEEcCCCCEEEEEECCc-EEEEEc
Q 004217 142 LKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGHK-LYIWRY 219 (767)
Q Consensus 142 l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~-h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl 219 (767)
+..|.||.+.|.+++++|.+.+.|+||+-|++.+|||++.+.+++.|. |...|++++|.|+|.-+++|++|. +++||+
T Consensus 179 ~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDl 258 (343)
T KOG0286|consen 179 TQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDL 258 (343)
T ss_pred EEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEee
Confidence 999999999999999999899999999999999999999999999964 999999999999999999999887 999999
Q ss_pred CCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEeecCCCccCCCCeEEEecCCCCCCCc
Q 004217 220 NMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPG 294 (767)
Q Consensus 220 ~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s~~~~~~l~t~sG~~~~p~~~v~l~~~~Ssd~~~ 294 (767)
+...++. ......-..+|++++||..|++|++... +||.-.++....+. ||.+ ++-++.. ++|...
T Consensus 259 RaD~~~a-~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~---GHeN---RvScl~~--s~DG~a 329 (343)
T KOG0286|consen 259 RADQELA-VYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLA---GHEN---RVSCLGV--SPDGMA 329 (343)
T ss_pred cCCcEEe-eeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEee---ccCC---eeEEEEE--CCCCcE
Confidence 9987765 1111222568999999999998777543 78777666555554 5532 3344444 778888
Q ss_pred eeeccCCCCCCce
Q 004217 295 LAEEVPLITPPFL 307 (767)
Q Consensus 295 L~sg~~~~slpil 307 (767)
+.+|+.+..+++|
T Consensus 330 v~TgSWDs~lriW 342 (343)
T KOG0286|consen 330 VATGSWDSTLRIW 342 (343)
T ss_pred EEecchhHheeec
Confidence 9999888877776
No 15
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.89 E-value=1.1e-21 Score=199.66 Aligned_cols=256 Identities=19% Similarity=0.217 Sum_probs=200.1
Q ss_pred CcceeecccccceecC-----CcceEEEEEEcCCCEEEEEeCCCeEEEEeCCCC------CCCCCCCCeEEEEECCCCCe
Q 004217 53 HSSKRLLGETARKCSG-----SFSQIFEAGRDARRGLASWVEAESLHHLRPKYC------PLSPPPRSTIAAAFSPDGKT 121 (767)
Q Consensus 53 ~~sk~~wd~~~~~~~~-----s~s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~------~L~gH~~sVtsVaFSpDG~~ 121 (767)
....++|......|.. +..+-...+..+++.|+.+. ...||+||+.+. .+.+|+..|.++.|..||++
T Consensus 19 DhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrW 97 (311)
T KOG0315|consen 19 DHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRW 97 (311)
T ss_pred cceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc-CCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeE
Confidence 3457888877666652 34466677778888888775 567999999886 37799999999999999999
Q ss_pred EEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEee--cCCCCeEEEEE
Q 004217 122 LASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR--DFYRPIASIAF 199 (767)
Q Consensus 122 LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l--~h~~~VtsVaf 199 (767)
+++|++||++||||++...+.+.|+ |..+|+++..+| +...|++|..+|.|++||+....+...+ +....|.++..
T Consensus 98 MyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhp-nQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v 175 (311)
T KOG0315|consen 98 MYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHP-NQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTV 175 (311)
T ss_pred EEecCCCceEEEEeccCcccchhcc-CCCCcceEEecC-CcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEE
Confidence 9999999999999999977777765 779999999999 9999999999999999999998777764 35578999999
Q ss_pred cCCCCEEEEEECCc-EEEEEcCCCc---cccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEee
Q 004217 200 HASGELLAVASGHK-LYIWRYNMRE---ETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLAT 270 (767)
Q Consensus 200 SPdG~~LAsgSdd~-V~VWDl~t~~---~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s~~~~~~l~t 270 (767)
.|||.+|+.+.+.+ +++|++-... ++.+...+..|...+..+.+|||+++|+++++ +|+++.. ......
T Consensus 176 ~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~--~kle~~ 253 (311)
T KOG0315|consen 176 MPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF--FKLELV 253 (311)
T ss_pred cCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc--eeeEEE
Confidence 99999999888655 9999987643 23344567789999999999999998888765 6665532 122222
Q ss_pred cCCCccCCCCeEEEecCCCCCCCceeeccCCCCCCceeeEEecCCCEEEEeecCCCCCCcccccccccCCceeeeeccCC
Q 004217 271 SPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTP 350 (767)
Q Consensus 271 ~sG~~~~p~~~v~l~~~~Ssd~~~L~sg~~~~slpil~psFSpDg~rIva~~~~~d~Gs~~~~~~~~ss~~~~l~~~~~~ 350 (767)
+.|+ ..-.|-.+||.||++|+.. ++......|+.+
T Consensus 254 l~gh----------------------------~rWvWdc~FS~dg~YlvTa-----------------ssd~~~rlW~~~ 288 (311)
T KOG0315|consen 254 LTGH----------------------------QRWVWDCAFSADGEYLVTA-----------------SSDHTARLWDLS 288 (311)
T ss_pred eecC----------------------------CceEEeeeeccCccEEEec-----------------CCCCceeecccc
Confidence 2333 1234458999999999972 233456778888
Q ss_pred CCceeeee
Q 004217 351 SGQYELVL 358 (767)
Q Consensus 351 ~~q~~~~~ 358 (767)
+++....+
T Consensus 289 ~~k~v~qy 296 (311)
T KOG0315|consen 289 AGKEVRQY 296 (311)
T ss_pred cCceeeec
Confidence 77765555
No 16
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.89 E-value=1.1e-21 Score=221.96 Aligned_cols=241 Identities=18% Similarity=0.235 Sum_probs=191.6
Q ss_pred eEEEEEEcCCCEEEEEeC-CCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEc
Q 004217 72 QIFEAGRDARRGLASWVE-AESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH 146 (767)
Q Consensus 72 ~~~vA~sd~g~~LaSgs~-DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~ 146 (767)
...+++...|..|+-|+. -|.+.+|+..+. +.++|...++++++||||++||+|+.||.|||||..+|-|+.+|.
T Consensus 310 I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFt 389 (893)
T KOG0291|consen 310 ILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFT 389 (893)
T ss_pred eeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEec
Confidence 445566677899988764 478999998876 567999999999999999999999999999999999999999999
Q ss_pred cCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCCC--CeEEEEEcCCCCEEEEEECCc--EEEEEcCCC
Q 004217 147 GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYR--PIASIAFHASGELLAVASGHK--LYIWRYNMR 222 (767)
Q Consensus 147 gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~--~VtsVafSPdG~~LAsgSdd~--V~VWDl~t~ 222 (767)
.|+..|+.+.|+. .++.+++.+.||+|+.||+...++.+++.... ...|++.+|.|.++..|+.|. |+||++.++
T Consensus 390 eHts~Vt~v~f~~-~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTG 468 (893)
T KOG0291|consen 390 EHTSGVTAVQFTA-RGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTG 468 (893)
T ss_pred cCCCceEEEEEEe-cCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecC
Confidence 9999999999999 99999999999999999999999999987554 457889999999999999776 999999999
Q ss_pred ccccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCCcCCCCcceeEeecCCCccCCCCeEEEecCCCCCCCceeeccCCC
Q 004217 223 EETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLI 302 (767)
Q Consensus 223 ~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgsvwdl~s~~~~~~l~t~sG~~~~p~~~v~l~~~~Ssd~~~L~sg~~~~ 302 (767)
+.+. .+.+|.++|.+++|+|++..|+ +++ ||- .+.+|+.-++... .+.-..
T Consensus 469 qllD---iLsGHEgPVs~l~f~~~~~~La-S~S-WDk---------------------TVRiW~if~s~~~---vEtl~i 519 (893)
T KOG0291|consen 469 QLLD---ILSGHEGPVSGLSFSPDGSLLA-SGS-WDK---------------------TVRIWDIFSSSGT---VETLEI 519 (893)
T ss_pred eeee---hhcCCCCcceeeEEccccCeEE-ecc-ccc---------------------eEEEEEeeccCce---eeeEee
Confidence 9876 8899999999999999999544 443 221 1222322111100 011112
Q ss_pred CCCceeeEEecCCCEEEEeecCCCCCCcccccccccCCceeeeeccCCCCceeeeec
Q 004217 303 TPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQYELVLS 359 (767)
Q Consensus 303 slpil~psFSpDg~rIva~~~~~d~Gs~~~~~~~~ss~~~~l~~~~~~~~q~~~~~~ 359 (767)
..-.+.++|+|||+.|.+. ....++.|||...+..-..|-
T Consensus 520 ~sdvl~vsfrPdG~elaVa-----------------TldgqItf~d~~~~~q~~~Id 559 (893)
T KOG0291|consen 520 RSDVLAVSFRPDGKELAVA-----------------TLDGQITFFDIKEAVQVGSID 559 (893)
T ss_pred ccceeEEEEcCCCCeEEEE-----------------EecceEEEEEhhhceeecccc
Confidence 3345578999999999982 223468899987766665554
No 17
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.88 E-value=1.7e-21 Score=205.84 Aligned_cols=247 Identities=16% Similarity=0.195 Sum_probs=198.1
Q ss_pred eEEEEEEcCCCEEEEEeCCCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEcc
Q 004217 72 QIFEAGRDARRGLASWVEAESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHG 147 (767)
Q Consensus 72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~----L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~g 147 (767)
..++++.....++++|+.|++|++||+.+++ +.||...|..+++|+.-.+|++++.|+.|+-||++..+.++.+.|
T Consensus 154 Vr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhG 233 (460)
T KOG0285|consen 154 VRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHG 233 (460)
T ss_pred EEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhcc
Confidence 7888998999999999999999999999985 569999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec-CCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccc
Q 004217 148 HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGHK-LYIWRYNMREET 225 (767)
Q Consensus 148 H~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~-h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~ 225 (767)
|-..|++++.+| .-+.|++|+.|.++++||+++...+..+. |..+|.++.+.|-...+++|+.|. |++||++.++..
T Consensus 234 HlS~V~~L~lhP-Tldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~ 312 (460)
T KOG0285|consen 234 HLSGVYCLDLHP-TLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTM 312 (460)
T ss_pred ccceeEEEeccc-cceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCcee
Confidence 999999999999 88999999999999999999999988865 999999999999888899999665 999999999864
Q ss_pred cCCeEEecCCCCeEEEEEccCCCeEEEEEeeCCcCCCCcc--eeEeecCCCcc----------------CCCCeEEEecC
Q 004217 226 SSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESS--LTLATSPGYWR----------------YPPPVICMAGA 287 (767)
Q Consensus 226 ~~~~~l~~h~~~VtsVaFSPDG~~LlaSgsvwdl~s~~~~--~~l~t~sG~~~----------------~p~~~v~l~~~ 287 (767)
. .+..|...|++++.+|... ++++++-++++.++.+ ..+...+||.. -....+++|+-
T Consensus 313 ~---tlt~hkksvral~lhP~e~-~fASas~dnik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~~G~dng~~~fwdw 388 (460)
T KOG0285|consen 313 I---TLTHHKKSVRALCLHPKEN-LFASASPDNIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVLVSGGDNGSIMFWDW 388 (460)
T ss_pred E---eeecccceeeEEecCCchh-hhhccCCccceeccCCccchhhccccccceeeeeeeccCceEEEcCCceEEEEEec
Confidence 4 7788999999999999987 5555554444433322 11111222211 12356777776
Q ss_pred CCCCCCcee-----eccCCCCCCceeeEEecCCCEEEEeec
Q 004217 288 HSSSHPGLA-----EEVPLITPPFLRPSFVRDDERISLQHT 323 (767)
Q Consensus 288 ~Ssd~~~L~-----sg~~~~slpil~psFSpDg~rIva~~~ 323 (767)
.++-..... -|+-.....++..+|...+.+|+...+
T Consensus 389 ksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~ea 429 (460)
T KOG0285|consen 389 KSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEA 429 (460)
T ss_pred CcCcccccccccccCCccccccceeEEeecccCceEEeccC
Confidence 665443322 233333445677889888999887433
No 18
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.88 E-value=2.9e-21 Score=200.75 Aligned_cols=201 Identities=15% Similarity=0.162 Sum_probs=176.4
Q ss_pred eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC-----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEc
Q 004217 72 QIFEAGRDARRGLASWVEAESLHHLRPKYC-----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH 146 (767)
Q Consensus 72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~-----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~ 146 (767)
.....+..++..+++++.|..|.+|+.... .+++|++.|..+.|.+|++.|++++.|.+|+.||.++|++++.++
T Consensus 50 I~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k 129 (338)
T KOG0265|consen 50 IYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHK 129 (338)
T ss_pred EEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhc
Confidence 445677889999999999999999997543 688999999999999999999999999999999999999999999
Q ss_pred cCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEE-CCcEEEEEcCCCccc
Q 004217 147 GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREET 225 (767)
Q Consensus 147 gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgS-dd~V~VWDl~t~~~~ 225 (767)
+|..-|..+.-+..+..++.|++.|+++++||+++..+++++..+..++++.|..++..+.+|+ ++.|++||++..+..
T Consensus 130 ~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~ 209 (338)
T KOG0265|consen 130 GHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGL 209 (338)
T ss_pred cccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCceeeeccccCcce
Confidence 9999999988555466789999999999999999999999999999999999999999999998 556999999998865
Q ss_pred cCCeEEecCCCCeEEEEEccCCCeEEEEE-----eeCCcCCCCccee-EeecCCCc
Q 004217 226 SSPRIVLRTRRSLRAVHFHPHAAPLLLTA-----EVNDLDSSESSLT-LATSPGYW 275 (767)
Q Consensus 226 ~~~~~l~~h~~~VtsVaFSPDG~~LlaSg-----svwdl~s~~~~~~-l~t~sG~~ 275 (767)
. .+.+|.+.|+.+..+|+|.++++-+ .+||++....... +..+.|+.
T Consensus 210 ~---~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~ 262 (338)
T KOG0265|consen 210 Y---TLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHI 262 (338)
T ss_pred E---EeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecch
Confidence 5 8899999999999999999887633 3999986555433 55555553
No 19
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.87 E-value=7.7e-21 Score=197.00 Aligned_cols=171 Identities=20% Similarity=0.293 Sum_probs=156.7
Q ss_pred EEEEEcCCCEEEEEeCCCeEEEEeCCCCC----CCCCCCCeEEEEECC-CCCeEEEEeCCCeEEEEECCCCeEEEEEccC
Q 004217 74 FEAGRDARRGLASWVEAESLHHLRPKYCP----LSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCLKVLHGH 148 (767)
Q Consensus 74 ~vA~sd~g~~LaSgs~DgsIrlWd~~t~~----L~gH~~sVtsVaFSp-DG~~LASgs~DGtVrVWDl~tg~~l~~L~gH 148 (767)
+..+.+ ...|++++.|.+.-+||+++++ +.+|.+.|.+++++| +++.+++|+-|+..+|||++.+.+++.|.+|
T Consensus 150 cC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~gh 228 (343)
T KOG0286|consen 150 CCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGH 228 (343)
T ss_pred EEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeeccc
Confidence 344444 7788999999999999999983 789999999999999 9999999999999999999999999999999
Q ss_pred CCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCC---CCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCcc
Q 004217 149 RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFY---RPIASIAFHASGELLAVASGHK-LYIWRYNMREE 224 (767)
Q Consensus 149 ~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~---~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~ 224 (767)
...|++++|+| ++.-|++|+.|++.++||++..+.+..+.+. ..|++++|+-.|++|++|.+|. +.+||.-.++.
T Consensus 229 esDINsv~ffP-~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~ 307 (343)
T KOG0286|consen 229 ESDINSVRFFP-SGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGER 307 (343)
T ss_pred ccccceEEEcc-CCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccce
Confidence 99999999999 9999999999999999999999999887754 5789999999999999998666 99999988876
Q ss_pred ccCCeEEecCCCCeEEEEEccCCCe
Q 004217 225 TSSPRIVLRTRRSLRAVHFHPHAAP 249 (767)
Q Consensus 225 ~~~~~~l~~h~~~VtsVaFSPDG~~ 249 (767)
.. .+.+|.+.|.++..+|||.-
T Consensus 308 vg---~L~GHeNRvScl~~s~DG~a 329 (343)
T KOG0286|consen 308 VG---VLAGHENRVSCLGVSPDGMA 329 (343)
T ss_pred EE---EeeccCCeeEEEEECCCCcE
Confidence 55 78899999999999999973
No 20
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=1.3e-20 Score=205.89 Aligned_cols=220 Identities=22% Similarity=0.284 Sum_probs=182.2
Q ss_pred eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECC-CCCeEEEEeCCCeEEEEECCCCeEEEEEc
Q 004217 72 QIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCLKVLH 146 (767)
Q Consensus 72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSp-DG~~LASgs~DGtVrVWDl~tg~~l~~L~ 146 (767)
+..+.++.+|+.++.|.+.|.|+++|.++. .+.+|+.+|..+.|+| |++.|++|++|+.+++||+.+......+.
T Consensus 71 v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~ 150 (487)
T KOG0310|consen 71 VYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELS 150 (487)
T ss_pred eeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEec
Confidence 344557889999999999999999997764 5889999999999999 67788999999999999999998766899
Q ss_pred cCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCC-eEEEeecCCCCeEEEEEcCCCCEEEEEECCcEEEEEcCCCccc
Q 004217 147 GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTA-ECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREET 225 (767)
Q Consensus 147 gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg-~~i~~l~h~~~VtsVafSPdG~~LAsgSdd~V~VWDl~t~~~~ 225 (767)
+|++.|.+.+|+|.++.+++||+.||+|++||+++. ..+.++.|..+|..+.|-|.|..|++++++.|+|||+-++...
T Consensus 151 ~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~ql 230 (487)
T KOG0310|consen 151 GHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQL 230 (487)
T ss_pred CCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCcee
Confidence 999999999999988889999999999999999987 7888899999999999999999999999999999999977653
Q ss_pred cCCeEEecCCCCeEEEEEccCCCeEEEEEeeCCcCCCCcceeEeecCCCccCCCCeEEEecCCCCCCCceeeccCCCCCC
Q 004217 226 SSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPP 305 (767)
Q Consensus 226 ~~~~~l~~h~~~VtsVaFSPDG~~LlaSgsvwdl~s~~~~~~l~t~sG~~~~p~~~v~l~~~~Ssd~~~L~sg~~~~slp 305 (767)
. .....|...|+|+.+..++..|++++=+-.++ +...+.| ..+. ...++.|
T Consensus 231 l--~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VK-------Vfd~t~~-----Kvv~---------------s~~~~~p 281 (487)
T KOG0310|consen 231 L--TSMFNHNKTVTCLRLASDSTRLLSGSLDRHVK-------VFDTTNY-----KVVH---------------SWKYPGP 281 (487)
T ss_pred h--hhhhcccceEEEEEeecCCceEeecccccceE-------EEEccce-----EEEE---------------eeecccc
Confidence 2 34555999999999999998887766322222 1111111 1122 1235668
Q ss_pred ceeeEEecCCCEEEE
Q 004217 306 FLRPSFVRDDERISL 320 (767)
Q Consensus 306 il~psFSpDg~rIva 320 (767)
++..+.+||+..+++
T Consensus 282 vLsiavs~dd~t~vi 296 (487)
T KOG0310|consen 282 VLSIAVSPDDQTVVI 296 (487)
T ss_pred eeeEEecCCCceEEE
Confidence 888889999999988
No 21
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.87 E-value=2.8e-20 Score=211.64 Aligned_cols=182 Identities=24% Similarity=0.334 Sum_probs=157.3
Q ss_pred cceEEEEEEcCCCEEEEEeCCCeEEEEeCCCC-----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEE
Q 004217 70 FSQIFEAGRDARRGLASWVEAESLHHLRPKYC-----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKV 144 (767)
Q Consensus 70 ~s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~-----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~ 144 (767)
.....++++.++..+++++.|++|++||.+.. .+.+|...|++++|+|+|+++++|+.|++|+|||+++++++..
T Consensus 204 ~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~ 283 (456)
T KOG0266|consen 204 RGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRK 283 (456)
T ss_pred cceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEe
Confidence 34667788899999999999999999999433 5789999999999999999999999999999999999999999
Q ss_pred EccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCe--EEEeec-CCC--CeEEEEEcCCCCEEEEEECCc-EEEEE
Q 004217 145 LHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAE--CIGSRD-FYR--PIASIAFHASGELLAVASGHK-LYIWR 218 (767)
Q Consensus 145 L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~--~i~~l~-h~~--~VtsVafSPdG~~LAsgSdd~-V~VWD 218 (767)
+.+|.+.|.+++|++ ++++|++++.|+.|++||+.++. +...+. +.. .++++.|+|++.+|+++..|+ +++||
T Consensus 284 l~~hs~~is~~~f~~-d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~ 362 (456)
T KOG0266|consen 284 LKGHSDGISGLAFSP-DGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWD 362 (456)
T ss_pred eeccCCceEEEEECC-CCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEE
Confidence 999999999999999 99999999999999999999999 455543 322 689999999999999999886 99999
Q ss_pred cCCCccccCCeEEecCCC---CeEEEEEccCCCeEEEEEe
Q 004217 219 YNMREETSSPRIVLRTRR---SLRAVHFHPHAAPLLLTAE 255 (767)
Q Consensus 219 l~t~~~~~~~~~l~~h~~---~VtsVaFSPDG~~LlaSgs 255 (767)
+....... ...+|.. .+.+..+++.++++++++.
T Consensus 363 l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~sg~~ 399 (456)
T KOG0266|consen 363 LRSGKSVG---TYTGHSNLVRCIFSPTLSTGGKLIYSGSE 399 (456)
T ss_pred ccCCccee---eecccCCcceeEecccccCCCCeEEEEeC
Confidence 99887655 5666655 3455566778887766654
No 22
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.87 E-value=2.3e-19 Score=180.29 Aligned_cols=188 Identities=23% Similarity=0.371 Sum_probs=163.7
Q ss_pred eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEcc
Q 004217 72 QIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHG 147 (767)
Q Consensus 72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~g 147 (767)
...+.+.+++..+++++.++.|++|+.... .+..|...+..+.|++++++|++++.|+.|++||+.+++.+..+..
T Consensus 12 i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~ 91 (289)
T cd00200 12 VTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTG 91 (289)
T ss_pred EEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEec
Confidence 556677788899999999999999999875 4668999999999999999999999999999999999888889999
Q ss_pred CCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec-CCCCeEEEEEcCCCCEEEEEE-CCcEEEEEcCCCccc
Q 004217 148 HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREET 225 (767)
Q Consensus 148 H~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~-h~~~VtsVafSPdG~~LAsgS-dd~V~VWDl~t~~~~ 225 (767)
|...+.++.|++ +++++++++.|+.|++||+.+++....+. |...+.+++|+|++.++++++ ++.|++||+++.+..
T Consensus 92 ~~~~i~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~ 170 (289)
T cd00200 92 HTSYVSSVAFSP-DGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCV 170 (289)
T ss_pred cCCcEEEEEEcC-CCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccc
Confidence 999999999999 78888888889999999999888887765 788999999999999999998 556999999877654
Q ss_pred cCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCC
Q 004217 226 SSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSE 263 (767)
Q Consensus 226 ~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s~~ 263 (767)
. .+..|...|.++.|+|+++.+++++. +|+++...
T Consensus 171 ~---~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~ 210 (289)
T cd00200 171 A---TLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGK 210 (289)
T ss_pred e---eEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCc
Confidence 4 56678889999999999987877764 66666433
No 23
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.86 E-value=6.9e-20 Score=207.63 Aligned_cols=256 Identities=18% Similarity=0.201 Sum_probs=196.1
Q ss_pred cceEEEEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEE
Q 004217 70 FSQIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL 145 (767)
Q Consensus 70 ~s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L 145 (767)
....+++.+.+|+.+++|++|++|++||...+ ++..|+..|+.+.|+.+|+.|++.+-||+|+.||+...+..++|
T Consensus 351 ~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTf 430 (893)
T KOG0291|consen 351 DRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTF 430 (893)
T ss_pred cceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeee
Confidence 44788889999999999999999999999985 68999999999999999999999999999999999999999999
Q ss_pred ccCC-CCcEEEEEccCCCcEEEEEeCCC-eEEEEECCCCeEEEee-cCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCC
Q 004217 146 HGHR-RTPWVVRFHPLNPTIIASGSLDH-EVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASGHK-LYIWRYNM 221 (767)
Q Consensus 146 ~gH~-~~V~sLafsP~dg~lLaSgS~DG-tVrIWDl~tg~~i~~l-~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t 221 (767)
.... ....+++..| .+.+++.|+.|. .|.+|++++|+.+-.+ +|.++|.+++|+|+|..|++++.|+ |++||+-.
T Consensus 431 t~P~p~QfscvavD~-sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~ 509 (893)
T KOG0291|consen 431 TSPEPIQFSCVAVDP-SGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFS 509 (893)
T ss_pred cCCCceeeeEEEEcC-CCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeec
Confidence 7644 3467889999 889999998886 5999999999999886 5999999999999999999999766 99999876
Q ss_pred CccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEeecCCCccCCCCeEEEecCCCCCCCcee
Q 004217 222 REETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLA 296 (767)
Q Consensus 222 ~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s~~~~~~l~t~sG~~~~p~~~v~l~~~~Ssd~~~L~ 296 (767)
..... ....+...+..++|+|||+.++++.- +||+.... .+.+..|......... .+ ...
T Consensus 510 s~~~v---Etl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~---q~~~IdgrkD~~~gR~-------~~--D~~ 574 (893)
T KOG0291|consen 510 SSGTV---ETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAV---QVGSIDGRKDLSGGRK-------ET--DRI 574 (893)
T ss_pred cCcee---eeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhce---eeccccchhhcccccc-------cc--cee
Confidence 54322 44567789999999999998887654 56555322 2223333322111100 00 111
Q ss_pred eccCCCCCCce-eeEEecCCCEEEEeecCCCCCCcccccccccCCceeeeeccCCCCceeeee
Q 004217 297 EEVPLITPPFL-RPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQYELVL 358 (767)
Q Consensus 297 sg~~~~slpil-~psFSpDg~rIva~~~~~d~Gs~~~~~~~~ss~~~~l~~~~~~~~q~~~~~ 358 (767)
+.........+ ..+||+||..|++++. +..+..|+.+++-.-+.+
T Consensus 575 ta~~sa~~K~Ftti~ySaDG~~IlAgG~-----------------sn~iCiY~v~~~vllkkf 620 (893)
T KOG0291|consen 575 TAENSAKGKTFTTICYSADGKCILAGGE-----------------SNSICIYDVPEGVLLKKF 620 (893)
T ss_pred ehhhcccCCceEEEEEcCCCCEEEecCC-----------------cccEEEEECchhheeeeE
Confidence 11111222344 7999999999998322 345677887776555544
No 24
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=6.9e-20 Score=209.84 Aligned_cols=352 Identities=20% Similarity=0.189 Sum_probs=242.4
Q ss_pred ceeecccccceec-----CCcceEEEEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEE
Q 004217 55 SKRLLGETARKCS-----GSFSQIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLAST 125 (767)
Q Consensus 55 sk~~wd~~~~~~~-----~s~s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASg 125 (767)
.-.+||-.-..+. .+..+.-+.+...+..+++|+.|-+|++|+.++. +|.||-+-|..+.|++.-.+|+|+
T Consensus 32 ~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSA 111 (1202)
T KOG0292|consen 32 VIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSA 111 (1202)
T ss_pred eeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEc
Confidence 4556765433332 2344677888889999999999999999999886 588999999999999999999999
Q ss_pred eCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCe----------------------
Q 004217 126 HGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAE---------------------- 183 (767)
Q Consensus 126 s~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~---------------------- 183 (767)
|+|.+|+||+..+++++..+.||...|.|.+|+| ..++++|+|.|.+||+||+..-+
T Consensus 112 SDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhp-tEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dL 190 (1202)
T KOG0292|consen 112 SDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHP-TEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDL 190 (1202)
T ss_pred cCCCeEEEEeccCCceEEEEecCceEEEeeccCC-ccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhh
Confidence 9999999999999999999999999999999999 89999999999999999985311
Q ss_pred -----EEEe--e-cCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 004217 184 -----CIGS--R-DFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA 254 (767)
Q Consensus 184 -----~i~~--l-~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSg 254 (767)
.+.. + +|...|+-++|+|.-.+|++|+||+ |++|.+...+... .-...+|.+.|.++-|+|....+++.+
T Consensus 191 fg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWE-vDtcrgH~nnVssvlfhp~q~lIlSns 269 (1202)
T KOG0292|consen 191 FGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWE-VDTCRGHYNNVSSVLFHPHQDLILSNS 269 (1202)
T ss_pred cCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEecccccee-ehhhhcccCCcceEEecCccceeEecC
Confidence 1111 1 4888999999999999999999998 9999998766443 446779999999999999999888776
Q ss_pred e-----eCCcCCCCcceeEeecCCCcc----CCCCeEEEecCCCCCCC-ceeeccCCCCCCceeeEEecCCCEEEEeecC
Q 004217 255 E-----VNDLDSSESSLTLATSPGYWR----YPPPVICMAGAHSSSHP-GLAEEVPLITPPFLRPSFVRDDERISLQHTE 324 (767)
Q Consensus 255 s-----vwdl~s~~~~~~l~t~sG~~~----~p~~~v~l~~~~Ssd~~-~L~sg~~~~slpil~psFSpDg~rIva~~~~ 324 (767)
+ +||+....+......-++.+- .|.--++-+--+++--. .+..+.+...+..-..-|.. +++|+.....
T Consensus 270 EDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsGm~VFkleRErpa~~v~~n~LfYvk-d~~i~~~d~~ 348 (1202)
T KOG0292|consen 270 EDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSGMIVFKLERERPAYAVNGNGLFYVK-DRFIRSYDLR 348 (1202)
T ss_pred CCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeecCCceEEEEEcccCceEEEcCCEEEEEc-cceEEeeecc
Confidence 6 888886555554433333211 01000000000000000 00001111111111122222 5555544333
Q ss_pred CCCCCcccc-------------cccccCCceeeeeccCCCCceeeeeccCCCCCCCCCCCCCCccccccccccCCccccc
Q 004217 325 HDSGATRTQ-------------QSLRSSSSVRLLTYSTPSGQYELVLSPIASNRSSPMPDGTGTDSFVSEIDGALPQAAI 391 (767)
Q Consensus 325 ~d~Gs~~~~-------------~~~~ss~~~~l~~~~~~~~q~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (767)
..-.+...+ .....+-++.+.-.+.+++.++++.-|.++....+..+......--..|.+++....+
T Consensus 349 t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~~~~~~~~k~tG~~a~fvarNrfavl 428 (1202)
T KOG0292|consen 349 TQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGVSDGKDVKKGTGEGALFVARNRFAVL 428 (1202)
T ss_pred ccccceeEeccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEecCcccccCCchhhhcCCCCceEEEEecceEEE
Confidence 322222222 2222333444444467899999999999988777767766666777789999999999
Q ss_pred cc-ccccc----CCCCCCCCCCC
Q 004217 392 GA-VGTLD----GLPEERTNYLP 409 (767)
Q Consensus 392 ~~-~~~~~----~~~~~~~~~~~ 409 (767)
++ +++-. .|-+.++.++|
T Consensus 429 ~k~~~~v~ik~l~N~vtkkl~~~ 451 (1202)
T KOG0292|consen 429 DKSNEQVVIKNLKNKVTKKLLLP 451 (1202)
T ss_pred EecCcceEEecccchhhhcccCc
Confidence 99 55544 34444444444
No 25
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.85 E-value=6.3e-20 Score=186.84 Aligned_cols=178 Identities=17% Similarity=0.282 Sum_probs=152.6
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCe--EEEEEccCCCCcE
Q 004217 80 ARRGLASWVEAESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS--CLKVLHGHRRTPW 153 (767)
Q Consensus 80 ~g~~LaSgs~DgsIrlWd~~t~~----L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~--~l~~L~gH~~~V~ 153 (767)
....|++.+.|.+||+|.+.++. ++-..+.|+.+...||++.||+++. ..||+||+.+++ ++.+|.+|+..|.
T Consensus 9 ~~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVt 87 (311)
T KOG0315|consen 9 DPVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVT 87 (311)
T ss_pred CceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceE
Confidence 45678899999999999999873 4444567999999999999999887 489999999865 5889999999999
Q ss_pred EEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccCCeEEe
Q 004217 154 VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVL 232 (767)
Q Consensus 154 sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~ 232 (767)
++.|.. +++++++|++||+++|||++...+.+.+.+..+|+++..+|+...|++|..++ |++||+....... ..+.
T Consensus 88 aVgF~~-dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~--~liP 164 (311)
T KOG0315|consen 88 AVGFQC-DGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTH--ELIP 164 (311)
T ss_pred EEEEee-cCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCcccc--ccCC
Confidence 999999 99999999999999999999999999999999999999999999999998655 9999998875433 2233
Q ss_pred cCCCCeEEEEEccCCCeEEEEEe-----eCCcCC
Q 004217 233 RTRRSLRAVHFHPHAAPLLLTAE-----VNDLDS 261 (767)
Q Consensus 233 ~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s 261 (767)
.....|.++...|||+.+++.-. +|++-.
T Consensus 165 e~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~ 198 (311)
T KOG0315|consen 165 EDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLN 198 (311)
T ss_pred CCCcceeeEEEcCCCcEEEEecCCccEEEEEccC
Confidence 44578999999999997766533 777764
No 26
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.85 E-value=2.6e-19 Score=194.88 Aligned_cols=250 Identities=13% Similarity=0.126 Sum_probs=203.0
Q ss_pred ceEEEEEEcCCCEEEEEeCCCeEEEEeCCCC---CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEcc
Q 004217 71 SQIFEAGRDARRGLASWVEAESLHHLRPKYC---PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHG 147 (767)
Q Consensus 71 s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~---~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~g 147 (767)
....++++.+|..|++|+.||.+++|+.... .|..|+++|.++.|+.+|.+|++++.|+++.|||..+|.....|.-
T Consensus 237 dVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~ 316 (524)
T KOG0273|consen 237 DVTSLDWNNDGTLLATGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEF 316 (524)
T ss_pred CcceEEecCCCCeEEEeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeee
Confidence 3778889899999999999999999999865 5779999999999999999999999999999999999999999998
Q ss_pred CCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEee-cCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccc
Q 004217 148 HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREET 225 (767)
Q Consensus 148 H~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l-~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~ 225 (767)
|...-..|.|-. ...|++++.|+.|+++.+....++.++ +|.+.|.++.|+|.|.+|+++++|+ ++||........
T Consensus 317 ~s~~~lDVdW~~--~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~ 394 (524)
T KOG0273|consen 317 HSAPALDVDWQS--NDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSV 394 (524)
T ss_pred ccCCccceEEec--CceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcch
Confidence 988878899964 678999999999999999988888774 6999999999999999999999877 999998877755
Q ss_pred cCCeEEecCCCCeEEEEEccCCCeEEEEEeeCCcCCCCcceeEeecCCCccCCCCeEEEecCCCCCCCceeeccCCCCCC
Q 004217 226 SSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPP 305 (767)
Q Consensus 226 ~~~~~l~~h~~~VtsVaFSPDG~~LlaSgsvwdl~s~~~~~~l~t~sG~~~~p~~~v~l~~~~Ssd~~~L~sg~~~~slp 305 (767)
. .+..|...|+.+.|+|+|.. .|+...... .+... ....+.+|+..++...+.... ..-|
T Consensus 395 ~---~l~~Hskei~t~~wsp~g~v------~~n~~~~~~--l~sas------~dstV~lwdv~~gv~i~~f~k---H~~p 454 (524)
T KOG0273|consen 395 H---DLQAHSKEIYTIKWSPTGPV------TSNPNMNLM--LASAS------FDSTVKLWDVESGVPIHTLMK---HQEP 454 (524)
T ss_pred h---hhhhhccceeeEeecCCCCc------cCCCcCCce--EEEee------cCCeEEEEEccCCceeEeecc---CCCc
Confidence 5 67889999999999998872 222221111 11100 123566777666665555433 4668
Q ss_pred ceeeEEecCCCEEEEeecCCCCCCcccccccccCCceeeeeccCCCCceeeeec
Q 004217 306 FLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQYELVLS 359 (767)
Q Consensus 306 il~psFSpDg~rIva~~~~~d~Gs~~~~~~~~ss~~~~l~~~~~~~~q~~~~~~ 359 (767)
+..++|||||++++. ++....+..|+..+++..+.+.
T Consensus 455 VysvafS~~g~ylAs-----------------Gs~dg~V~iws~~~~~l~~s~~ 491 (524)
T KOG0273|consen 455 VYSVAFSPNGRYLAS-----------------GSLDGCVHIWSTKTGKLVKSYQ 491 (524)
T ss_pred eEEEEecCCCcEEEe-----------------cCCCCeeEeccccchheeEeec
Confidence 889999999999997 3445567778887777776663
No 27
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=2.4e-20 Score=197.81 Aligned_cols=195 Identities=26% Similarity=0.353 Sum_probs=174.1
Q ss_pred eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC-----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEc
Q 004217 72 QIFEAGRDARRGLASWVEAESLHHLRPKYC-----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH 146 (767)
Q Consensus 72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~-----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~ 146 (767)
.--+++...|+.|++.+.|-.+++||..+. .+.+|...|.+++|-|.|.+|++++.|.+|+.||+.+|-++.+|.
T Consensus 153 v~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~ 232 (406)
T KOG0295|consen 153 VFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFP 232 (406)
T ss_pred eeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEecc
Confidence 445667778999999999999999999874 478999999999999999999999999999999999999999999
Q ss_pred cCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEee-cCCCCeEEEEEcCC---------------CCEEEEEE
Q 004217 147 GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHAS---------------GELLAVAS 210 (767)
Q Consensus 147 gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l-~h~~~VtsVafSPd---------------G~~LAsgS 210 (767)
+|...|..++.+. |+.++++++.|.+|++|-+.+++|...+ .|+.+|.+++|-|. ++++++++
T Consensus 233 ~h~ewvr~v~v~~-DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~S 311 (406)
T KOG0295|consen 233 GHSEWVRMVRVNQ-DGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGS 311 (406)
T ss_pred CchHhEEEEEecC-CeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeec
Confidence 9999999999999 9999999999999999999999888775 48899999999773 25888898
Q ss_pred CCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEee
Q 004217 211 GHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLAT 270 (767)
Q Consensus 211 dd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s~~~~~~l~t 270 (767)
.|+ |++||+.++..+. .+.+|.++|+.++|+|.|+||++.++ +||+....+...+..
T Consensus 312 rDktIk~wdv~tg~cL~---tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~a 374 (406)
T KOG0295|consen 312 RDKTIKIWDVSTGMCLF---TLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEA 374 (406)
T ss_pred ccceEEEEeccCCeEEE---EEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCC
Confidence 766 9999999998655 89999999999999999999998776 888887666555543
No 28
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=5.8e-20 Score=194.95 Aligned_cols=181 Identities=17% Similarity=0.258 Sum_probs=164.4
Q ss_pred ceEEEEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEc
Q 004217 71 SQIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH 146 (767)
Q Consensus 71 s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~ 146 (767)
....+.+...+..|++++.|++|+.|+..++ ++.+|..-|..++.+.||.++|+|+.|.+|++|-+.++++...++
T Consensus 195 ~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR 274 (406)
T KOG0295|consen 195 GVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELR 274 (406)
T ss_pred ceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhh
Confidence 3666777788999999999999999999987 689999999999999999999999999999999999999999999
Q ss_pred cCCCCcEEEEEccC--------------CCcEEEEEeCCCeEEEEECCCCeEEEee-cCCCCeEEEEEcCCCCEEEEEEC
Q 004217 147 GHRRTPWVVRFHPL--------------NPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASG 211 (767)
Q Consensus 147 gH~~~V~sLafsP~--------------dg~lLaSgS~DGtVrIWDl~tg~~i~~l-~h~~~VtsVafSPdG~~LAsgSd 211 (767)
+|...|.+++|.|. .+.++.+++.|++|++||+.++.|+.++ +|...|..++|+|.|+||+++.|
T Consensus 275 ~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaD 354 (406)
T KOG0295|consen 275 EHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCAD 354 (406)
T ss_pred ccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEec
Confidence 99999999999882 2359999999999999999999999886 59999999999999999999998
Q ss_pred Cc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217 212 HK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (767)
Q Consensus 212 d~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs 255 (767)
|+ +++||+++.++.. .+..|..-|++++|+.+-. ++++|+
T Consensus 355 Dktlrvwdl~~~~cmk---~~~ah~hfvt~lDfh~~~p-~VvTGs 395 (406)
T KOG0295|consen 355 DKTLRVWDLKNLQCMK---TLEAHEHFVTSLDFHKTAP-YVVTGS 395 (406)
T ss_pred CCcEEEEEeccceeee---ccCCCcceeEEEecCCCCc-eEEecc
Confidence 88 9999999998755 6678999999999999888 455555
No 29
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.84 E-value=1.4e-18 Score=210.12 Aligned_cols=187 Identities=17% Similarity=0.246 Sum_probs=157.0
Q ss_pred ceEEEEEEcCCCEEEEEeCCCeEEEEeCCCC----C-------CCCCCCCeEEEEECC-CCCeEEEEeCCCeEEEEECCC
Q 004217 71 SQIFEAGRDARRGLASWVEAESLHHLRPKYC----P-------LSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQT 138 (767)
Q Consensus 71 s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----~-------L~gH~~sVtsVaFSp-DG~~LASgs~DGtVrVWDl~t 138 (767)
....+++..++..+++++.|++|++|+.... . ...+...|.+++|++ ++++|++++.|++|+|||+.+
T Consensus 485 ~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~ 564 (793)
T PLN00181 485 LVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVAR 564 (793)
T ss_pred cEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCC
Confidence 3666788889999999999999999997531 0 012346789999998 588999999999999999999
Q ss_pred CeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCCCCeEEEEEc-CCCCEEEEEECCc-EEE
Q 004217 139 GSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFH-ASGELLAVASGHK-LYI 216 (767)
Q Consensus 139 g~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~~VtsVafS-PdG~~LAsgSdd~-V~V 216 (767)
++.+..+.+|.+.|++++|+|.++.+|++|+.|++|++||++++.++..+.+...+.++.|+ ++|.+|++|+.++ |++
T Consensus 565 ~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~i 644 (793)
T PLN00181 565 SQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYY 644 (793)
T ss_pred CeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEE
Confidence 99999999999999999999767899999999999999999999998888777889999995 5789999999665 999
Q ss_pred EEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCcC
Q 004217 217 WRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLD 260 (767)
Q Consensus 217 WDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~ 260 (767)
||+++.+. ....+.+|...|.++.|. ++.+|++++. +||++
T Consensus 645 wD~~~~~~--~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~ 690 (793)
T PLN00181 645 YDLRNPKL--PLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLS 690 (793)
T ss_pred EECCCCCc--cceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCC
Confidence 99987653 123567899999999997 6776776654 55554
No 30
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=2e-19 Score=206.97 Aligned_cols=188 Identities=20% Similarity=0.242 Sum_probs=157.3
Q ss_pred cceEEEEEEcCCCEEEEEeCCCeEEEEeCCC--------------------------------C----------------
Q 004217 70 FSQIFEAGRDARRGLASWVEAESLHHLRPKY--------------------------------C---------------- 101 (767)
Q Consensus 70 ~s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t--------------------------------~---------------- 101 (767)
....++.++.+|++||++++|+.|++|.+.. .
T Consensus 268 gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~ 347 (712)
T KOG0283|consen 268 GAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSPC 347 (712)
T ss_pred CcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCcc
Confidence 3477788999999999999999999998754 0
Q ss_pred ----------------CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEE
Q 004217 102 ----------------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTII 165 (767)
Q Consensus 102 ----------------~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lL 165 (767)
.+.||.+.|.+|.||.+ .+|++++.|.+||||++...+|+..|. |.+.|+||+|+|.|.++|
T Consensus 348 ~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryF 425 (712)
T KOG0283|consen 348 VLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYF 425 (712)
T ss_pred ccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcE
Confidence 14589999999999975 589999999999999999999999996 999999999999999999
Q ss_pred EEEeCCCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccCCeEE------ecCCCCe
Q 004217 166 ASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIV------LRTRRSL 238 (767)
Q Consensus 166 aSgS~DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l------~~h~~~V 238 (767)
+||+.|+.||||++...+.+.......-|++++|.|||++.++|+-++ +++|++...+......+. ..|. .|
T Consensus 426 iSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~-rI 504 (712)
T KOG0283|consen 426 ISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGK-RI 504 (712)
T ss_pred eecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCc-ee
Confidence 999999999999999999888888889999999999999999999655 999999877654321111 1233 89
Q ss_pred EEEEEccCCC-eEEEEEeeCCcC
Q 004217 239 RAVHFHPHAA-PLLLTAEVNDLD 260 (767)
Q Consensus 239 tsVaFSPDG~-~LlaSgsvwdl~ 260 (767)
+.+.|.|... .+++|+.+-.++
T Consensus 505 TG~Q~~p~~~~~vLVTSnDSrIR 527 (712)
T KOG0283|consen 505 TGLQFFPGDPDEVLVTSNDSRIR 527 (712)
T ss_pred eeeEecCCCCCeEEEecCCCceE
Confidence 9999998554 366665543333
No 31
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.84 E-value=6.7e-18 Score=185.79 Aligned_cols=265 Identities=15% Similarity=0.159 Sum_probs=191.0
Q ss_pred eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC------CCCCCCCCeEEEEECCCCCeEEEEeCC----CeEEEEECCCCeE
Q 004217 72 QIFEAGRDARRGLASWVEAESLHHLRPKYC------PLSPPPRSTIAAAFSPDGKTLASTHGD----HTVKIIDCQTGSC 141 (767)
Q Consensus 72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~------~L~gH~~sVtsVaFSpDG~~LASgs~D----GtVrVWDl~tg~~ 141 (767)
......+..|.++++|...|+||+||.... +++.-.++|.+++|+.|+++|+..++. |.+.+|| +|..
T Consensus 62 vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~D--SG~S 139 (603)
T KOG0318|consen 62 VTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWD--SGNS 139 (603)
T ss_pred eEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEec--CCCc
Confidence 555667888999999999999999998763 456678899999999999999887653 3455565 6777
Q ss_pred EEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEee-cCCCCeEEEEEcCCCCEEEEEECCc-EEEEEc
Q 004217 142 LKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASGHK-LYIWRY 219 (767)
Q Consensus 142 l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l-~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl 219 (767)
+..+.||...|+++.|-|...-.+++|+.|++|.+|+-.-.+-..++ .|..-|+++.|+|||.++++.+.|+ |.+||=
T Consensus 140 vGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDG 219 (603)
T KOG0318|consen 140 VGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDG 219 (603)
T ss_pred cceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcC
Confidence 88999999999999999977789999999999999987665555554 4888999999999999999888555 999999
Q ss_pred CCCccccCCeEEecCCCCeEEEEEccCCCeEEEEE-----eeCCcCCCCcceeEeecCCCcc------CCC---------
Q 004217 220 NMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA-----EVNDLDSSESSLTLATSPGYWR------YPP--------- 279 (767)
Q Consensus 220 ~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSg-----svwdl~s~~~~~~l~t~sG~~~------~p~--------- 279 (767)
.+++.+.......+|.+.|.+|+|+||++.+++.+ ++||+.......++.......+ |+.
T Consensus 220 ktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~ 299 (603)
T KOG0318|consen 220 KTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLS 299 (603)
T ss_pred CCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcC
Confidence 99987662222348999999999999999998854 4999886654433332221100 111
Q ss_pred CeEEEecCCCCCCCceeeccCCCCCCceeeEEecCCCEEEEeecCCCCCCcccccccccCCceeeeeccCCCCceeeee
Q 004217 280 PVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQYELVL 358 (767)
Q Consensus 280 ~~v~l~~~~Ssd~~~L~sg~~~~slpil~psFSpDg~rIva~~~~~d~Gs~~~~~~~~ss~~~~l~~~~~~~~q~~~~~ 358 (767)
..+.+-+..-++...+..| ..-.+-...-++|++.|+. .|-...+..|+..++..++..
T Consensus 300 G~in~ln~~d~~~~~~i~G---HnK~ITaLtv~~d~~~i~S-----------------gsyDG~I~~W~~~~g~~~~~~ 358 (603)
T KOG0318|consen 300 GTINYLNPSDPSVLKVISG---HNKSITALTVSPDGKTIYS-----------------GSYDGHINSWDSGSGTSDRLA 358 (603)
T ss_pred cEEEEecccCCChhheecc---cccceeEEEEcCCCCEEEe-----------------eccCceEEEEecCCccccccc
Confidence 1111111111222223333 3334556777888888775 234445777777776655543
No 32
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.84 E-value=1.7e-20 Score=197.60 Aligned_cols=258 Identities=16% Similarity=0.208 Sum_probs=188.6
Q ss_pred eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEcc
Q 004217 72 QIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHG 147 (767)
Q Consensus 72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~g 147 (767)
+.++.. +...+++|..|++|++||.+.. .|.||+++|.|+.|. .+.|++|+.|.+|+|||+++|+++.++.+
T Consensus 200 VYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tlih 275 (499)
T KOG0281|consen 200 VYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTLIH 275 (499)
T ss_pred eEEEEe--cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHHhh
Confidence 444444 7788999999999999999874 688999999999995 56999999999999999999999999999
Q ss_pred CCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEe----ecCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCC
Q 004217 148 HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS----RDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMR 222 (767)
Q Consensus 148 H~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~----l~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~ 222 (767)
|...|..+.|+. .++++++.|.++.+||+.+...+.. .+|...|+.+.|+. ++++++++|+ |++|++.+.
T Consensus 276 HceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~--kyIVsASgDRTikvW~~st~ 350 (499)
T KOG0281|consen 276 HCEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKVWSTSTC 350 (499)
T ss_pred hcceeEEEEEeC---CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc--ceEEEecCCceEEEEeccce
Confidence 999999999965 8999999999999999987664332 46999999999964 5999999777 999999999
Q ss_pred ccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEeecCCCccC---------------CCCeE
Q 004217 223 EETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYWRY---------------PPPVI 282 (767)
Q Consensus 223 ~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s~~~~~~l~t~sG~~~~---------------p~~~v 282 (767)
+.++ .+.+|+..|.++.+. |++++++++ +||+..+.+...+. ||... -...+
T Consensus 351 efvR---tl~gHkRGIAClQYr--~rlvVSGSSDntIRlwdi~~G~cLRvLe---GHEeLvRciRFd~krIVSGaYDGki 422 (499)
T KOG0281|consen 351 EFVR---TLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLE---GHEELVRCIRFDNKRIVSGAYDGKI 422 (499)
T ss_pred eeeh---hhhcccccceehhcc--CeEEEecCCCceEEEEeccccHHHHHHh---chHHhhhheeecCceeeeccccceE
Confidence 9766 888999999999874 664444333 77877666654443 43221 12456
Q ss_pred EEecCCCCCCCceeecc------CCCCCCceeeEEecCCCEEEEeecCCCCCCcccccccccCCceeeeeccCCCCceee
Q 004217 283 CMAGAHSSSHPGLAEEV------PLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQYEL 356 (767)
Q Consensus 283 ~l~~~~Ssd~~~L~sg~------~~~slpil~psFSpDg~rIva~~~~~d~Gs~~~~~~~~ss~~~~l~~~~~~~~q~~~ 356 (767)
.+|+...+....-..+. ...+.+++...| |..+|+. ++-.-.+..||-.++-+..
T Consensus 423 kvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvs-----------------ssHddtILiWdFl~~~~~~ 483 (499)
T KOG0281|consen 423 KVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIIS-----------------SSHDDTILIWDFLNGPPSA 483 (499)
T ss_pred EEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEe-----------------ccCCCeEEEEEcCCCCccc
Confidence 77776554433211111 112234444444 4444443 2333457788887765554
Q ss_pred eeccCCCCC
Q 004217 357 VLSPIASNR 365 (767)
Q Consensus 357 ~~~p~~p~~ 365 (767)
.=.|..|++
T Consensus 484 ~~~~r~p~~ 492 (499)
T KOG0281|consen 484 AEETRSPSR 492 (499)
T ss_pred cccCCCCCc
Confidence 444444544
No 33
>PTZ00421 coronin; Provisional
Probab=99.83 E-value=1.7e-18 Score=198.48 Aligned_cols=187 Identities=14% Similarity=0.172 Sum_probs=151.4
Q ss_pred eEEEEEEc-CCCEEEEEeCCCeEEEEeCCCC-----------CCCCCCCCeEEEEECCCC-CeEEEEeCCCeEEEEECCC
Q 004217 72 QIFEAGRD-ARRGLASWVEAESLHHLRPKYC-----------PLSPPPRSTIAAAFSPDG-KTLASTHGDHTVKIIDCQT 138 (767)
Q Consensus 72 ~~~vA~sd-~g~~LaSgs~DgsIrlWd~~t~-----------~L~gH~~sVtsVaFSpDG-~~LASgs~DGtVrVWDl~t 138 (767)
...++++. ++..|++++.|++|++||+... .+.+|...|.+++|+|++ ++|++++.|++|+|||+++
T Consensus 78 V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~t 157 (493)
T PTZ00421 78 IIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVER 157 (493)
T ss_pred EEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCC
Confidence 55667766 6789999999999999998653 367899999999999975 6999999999999999999
Q ss_pred CeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec-CCCC-eEEEEEcCCCCEEEEEE-----C
Q 004217 139 GSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRP-IASIAFHASGELLAVAS-----G 211 (767)
Q Consensus 139 g~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~-h~~~-VtsVafSPdG~~LAsgS-----d 211 (767)
++.+..+.+|...|.+++|+| ++++|++++.|++|++||+++++.+..+. |... +..+.|.+++..+++++ +
T Consensus 158 g~~~~~l~~h~~~V~sla~sp-dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~D 236 (493)
T PTZ00421 158 GKAVEVIKCHSDQITSLEWNL-DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQ 236 (493)
T ss_pred CeEEEEEcCCCCceEEEEEEC-CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCC
Confidence 999999999999999999999 89999999999999999999999887754 5443 45678999888777654 2
Q ss_pred CcEEEEEcCCCccccCCeEEe-cCCCCeEEEEEccCCCeEEEEEe------eCCcCC
Q 004217 212 HKLYIWRYNMREETSSPRIVL-RTRRSLRAVHFHPHAAPLLLTAE------VNDLDS 261 (767)
Q Consensus 212 d~V~VWDl~t~~~~~~~~~l~-~h~~~VtsVaFSPDG~~LlaSgs------vwdl~s 261 (767)
+.|++||+++..... .... .+...+....|+++++.|++++. +|++..
T Consensus 237 r~VklWDlr~~~~p~--~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~ 291 (493)
T PTZ00421 237 RQIMLWDTRKMASPY--STVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMN 291 (493)
T ss_pred CeEEEEeCCCCCCce--eEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeC
Confidence 349999998765322 1222 23455667789999998877764 566654
No 34
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.83 E-value=1.3e-20 Score=201.99 Aligned_cols=184 Identities=16% Similarity=0.209 Sum_probs=160.5
Q ss_pred eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEcc
Q 004217 72 QIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHG 147 (767)
Q Consensus 72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~g 147 (767)
+-.+....+|++|++|+..|.+.+|+.... .++.|...|+++.|+++|.+++||+.+|.||+|+..-. .++.+.+
T Consensus 99 V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn-nVk~~~a 177 (464)
T KOG0284|consen 99 VNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN-NVKIIQA 177 (464)
T ss_pred eeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchh-hhHHhhH
Confidence 444556789999999999999999999765 36799999999999999999999999999999997644 3555555
Q ss_pred CC-CCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEe-ecCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCcc
Q 004217 148 HR-RTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-RDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREE 224 (767)
Q Consensus 148 H~-~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~-l~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~ 224 (767)
|. ..|.+++|+| +...|++++.||+|+|||....+.... .+|.-.|.+++|+|.-.+||++++|. |++||.+++.+
T Consensus 178 hh~eaIRdlafSp-nDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~c 256 (464)
T KOG0284|consen 178 HHAEAIRDLAFSP-NDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSC 256 (464)
T ss_pred hhhhhhheeccCC-CCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcch
Confidence 55 8999999999 889999999999999999998776555 46889999999999999999999877 99999999998
Q ss_pred ccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCcC
Q 004217 225 TSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLD 260 (767)
Q Consensus 225 ~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~ 260 (767)
+. .+.+|+..|.++.|+|++++|++.++ +.|++
T Consensus 257 l~---tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR 294 (464)
T KOG0284|consen 257 LA---TLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIR 294 (464)
T ss_pred hh---hhhhccceEEEEEEcCCCCeeEEccCCceEEEEehh
Confidence 76 78899999999999999998888665 55555
No 35
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=4.8e-18 Score=178.13 Aligned_cols=246 Identities=18% Similarity=0.252 Sum_probs=188.1
Q ss_pred eEEEEEEcCCCEEEEEeCCCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCeEEEEeC--CCeEEEEECCCCeEEEEE
Q 004217 72 QIFEAGRDARRGLASWVEAESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTLASTHG--DHTVKIIDCQTGSCLKVL 145 (767)
Q Consensus 72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~----L~gH~~sVtsVaFSpDG~~LASgs~--DGtVrVWDl~tg~~l~~L 145 (767)
...+.++++|..+++.++|.++++||...++ +..++-.|..++|-.....++.++. |.+||..++.+.+.++.|
T Consensus 17 i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF 96 (311)
T KOG1446|consen 17 INSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYF 96 (311)
T ss_pred eeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEc
Confidence 5567788999999999999999999998873 5567778999999887777777766 889999999999999999
Q ss_pred ccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEECC-cEEEEEcCCCcc
Q 004217 146 HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGH-KLYIWRYNMREE 224 (767)
Q Consensus 146 ~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSdd-~V~VWDl~t~~~ 224 (767)
.||+..|..++.+| .++.++|++.|++|++||++..+|...+..... ..++|+|+|-++|++.+. .|++||++.-..
T Consensus 97 ~GH~~~V~sL~~sP-~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~-pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dk 174 (311)
T KOG1446|consen 97 PGHKKRVNSLSVSP-KDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR-PIAAFDPEGLIFALANGSELIKLYDLRSFDK 174 (311)
T ss_pred CCCCceEEEEEecC-CCCeEEecccCCeEEeeEecCCCCceEEecCCC-cceeECCCCcEEEEecCCCeEEEEEecccCC
Confidence 99999999999999 779999999999999999999888877654433 247899999999999876 599999997643
Q ss_pred ccCCeEEe---cCCCCeEEEEEccCCCeEEEEEeeCCcCCCCcceeEeecCCCccCCCCeEEEecCCCCCCCceeeccCC
Q 004217 225 TSSPRIVL---RTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPL 301 (767)
Q Consensus 225 ~~~~~~l~---~h~~~VtsVaFSPDG~~LlaSgsvwdl~s~~~~~~l~t~sG~~~~p~~~v~l~~~~Ssd~~~L~sg~~~ 301 (767)
.. ...+. ......+.+.|||||++|+.+..... +.+-++..+......++.+.
T Consensus 175 gP-F~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~-----------------------~~~lDAf~G~~~~tfs~~~~ 230 (311)
T KOG1446|consen 175 GP-FTTFSITDNDEAEWTDLEFSPDGKSILLSTNASF-----------------------IYLLDAFDGTVKSTFSGYPN 230 (311)
T ss_pred CC-ceeEccCCCCccceeeeEEcCCCCEEEEEeCCCc-----------------------EEEEEccCCcEeeeEeeccC
Confidence 21 11111 33567899999999999988765211 11112122222222222222
Q ss_pred CC-CCceeeEEecCCCEEEEeecCCCCCCcccccccccCCceeeeeccCCCCceeeeeccC
Q 004217 302 IT-PPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQYELVLSPI 361 (767)
Q Consensus 302 ~s-lpil~psFSpDg~rIva~~~~~d~Gs~~~~~~~~ss~~~~l~~~~~~~~q~~~~~~p~ 361 (767)
.. +| +..+|+||++.|+. ++....+.+|+.+++..-..+.++
T Consensus 231 ~~~~~-~~a~ftPds~Fvl~-----------------gs~dg~i~vw~~~tg~~v~~~~~~ 273 (311)
T KOG1446|consen 231 AGNLP-LSATFTPDSKFVLS-----------------GSDDGTIHVWNLETGKKVAVLRGP 273 (311)
T ss_pred CCCcc-eeEEECCCCcEEEE-----------------ecCCCcEEEEEcCCCcEeeEecCC
Confidence 11 22 56899999999997 344567999999998888777654
No 36
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.83 E-value=2.5e-19 Score=189.52 Aligned_cols=213 Identities=16% Similarity=0.188 Sum_probs=180.8
Q ss_pred CcceeecccccceecCC-----cceEEEEEEcCCCEEEEEeCCCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCeEE
Q 004217 53 HSSKRLLGETARKCSGS-----FSQIFEAGRDARRGLASWVEAESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTLA 123 (767)
Q Consensus 53 ~~sk~~wd~~~~~~~~s-----~s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~----L~gH~~sVtsVaFSpDG~~LA 123 (767)
....++||-.......+ ....-+++++-.-+|+++.+|+.|+.||+++.+ +.||-..|.|++..|.-..|+
T Consensus 172 DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~ 251 (460)
T KOG0285|consen 172 DRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLV 251 (460)
T ss_pred CceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEE
Confidence 34566777654443211 124556778888999999999999999999874 679999999999999999999
Q ss_pred EEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEee-cCCCCeEEEEEcCC
Q 004217 124 STHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHAS 202 (767)
Q Consensus 124 Sgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l-~h~~~VtsVafSPd 202 (767)
+|+.|.++||||+++...+..+.||+..|..+.+.| -...+++|+.|++|++||++.++....+ .|+..|.+++.+|.
T Consensus 252 t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~-~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~ 330 (460)
T KOG0285|consen 252 TGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQP-TDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPK 330 (460)
T ss_pred ecCCcceEEEeeecccceEEEecCCCCcceeEEeec-CCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCc
Confidence 999999999999999999999999999999999999 6667999999999999999999887775 57889999999999
Q ss_pred CCEEEEEECCcEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEee
Q 004217 203 GELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLAT 270 (767)
Q Consensus 203 G~~LAsgSdd~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s~~~~~~l~t 270 (767)
...+|+++.|.|+-|++..+.... .+.+|..-|++++.+.||- +++++. .||++++...+...+
T Consensus 331 e~~fASas~dnik~w~~p~g~f~~---nlsgh~~iintl~~nsD~v-~~~G~dng~~~fwdwksg~nyQ~~~t 399 (460)
T KOG0285|consen 331 ENLFASASPDNIKQWKLPEGEFLQ---NLSGHNAIINTLSVNSDGV-LVSGGDNGSIMFWDWKSGHNYQRGQT 399 (460)
T ss_pred hhhhhccCCccceeccCCccchhh---ccccccceeeeeeeccCce-EEEcCCceEEEEEecCcCcccccccc
Confidence 999999999999999999988766 5889999999999999886 555544 788887776665543
No 37
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.83 E-value=3.4e-19 Score=193.88 Aligned_cols=180 Identities=19% Similarity=0.234 Sum_probs=158.9
Q ss_pred eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC---------------------------------------------CCCCC
Q 004217 72 QIFEAGRDARRGLASWVEAESLHHLRPKYC---------------------------------------------PLSPP 106 (767)
Q Consensus 72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~---------------------------------------------~L~gH 106 (767)
...+..+..|.+|++++.|+++.+||..++ ++.+|
T Consensus 279 I~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH 358 (524)
T KOG0273|consen 279 IFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGH 358 (524)
T ss_pred eEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecc
Confidence 555667778889999999999999998432 24589
Q ss_pred CCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCC--------CcEEEEEeCCCeEEEEE
Q 004217 107 PRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLN--------PTIIASGSLDHEVRLWN 178 (767)
Q Consensus 107 ~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~d--------g~lLaSgS~DGtVrIWD 178 (767)
.+.|.++.|+|.|.+|++++.|++++||......+.+.|.+|...|+.+.|+|.+ +..+++++.|++|++||
T Consensus 359 ~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwd 438 (524)
T KOG0273|consen 359 HGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWD 438 (524)
T ss_pred cCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEE
Confidence 9999999999999999999999999999999999999999999999999999942 45899999999999999
Q ss_pred CCCCeEEEee-cCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217 179 ASTAECIGSR-DFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (767)
Q Consensus 179 l~tg~~i~~l-~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs 255 (767)
+..+.++..+ +|..+|++++|+|+|+++|+|+-|+ |.+|+.++++..+ .....+.|..|+|+.+|.+|.++.+
T Consensus 439 v~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~----s~~~~~~Ifel~Wn~~G~kl~~~~s 513 (524)
T KOG0273|consen 439 VESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVK----SYQGTGGIFELCWNAAGDKLGACAS 513 (524)
T ss_pred ccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeE----eecCCCeEEEEEEcCCCCEEEEEec
Confidence 9999999997 7999999999999999999999655 9999999998655 3445677999999999997776654
No 38
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.82 E-value=1.3e-19 Score=205.28 Aligned_cols=180 Identities=22% Similarity=0.281 Sum_probs=161.7
Q ss_pred eEEEEEE-cCCCEEEEEeCCCeEEEEeCCCC-------C------CCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECC
Q 004217 72 QIFEAGR-DARRGLASWVEAESLHHLRPKYC-------P------LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQ 137 (767)
Q Consensus 72 ~~~vA~s-d~g~~LaSgs~DgsIrlWd~~t~-------~------L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~ 137 (767)
...++.+ ..-.++++++.|.++++|++... . ...|...|+|++.+|+.++||+||.|++.+||+++
T Consensus 414 vgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le 493 (775)
T KOG0319|consen 414 VGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLE 493 (775)
T ss_pred cceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeeccc
Confidence 4445543 34578999999999999998762 1 23799999999999999999999999999999999
Q ss_pred CCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec-CCCCeEEEEEcCCCCEEEEEECCc-EE
Q 004217 138 TGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGHK-LY 215 (767)
Q Consensus 138 tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~-h~~~VtsVafSPdG~~LAsgSdd~-V~ 215 (767)
.+....+|.||+..|+++.|+| ..++++|+|.|++|+||.+.+..|++++. |...|..+.|-.+|+.|++++.++ |+
T Consensus 494 ~~~l~~vLsGH~RGvw~V~Fs~-~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliK 572 (775)
T KOG0319|consen 494 QLRLLGVLSGHTRGVWCVSFSK-NDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIK 572 (775)
T ss_pred CceEEEEeeCCccceEEEEecc-ccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEE
Confidence 9999999999999999999999 88999999999999999999999999987 999999999999999999998777 99
Q ss_pred EEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217 216 IWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (767)
Q Consensus 216 VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs 255 (767)
+|++++.++.. .+..|.+.|++++.+|++..+++++.
T Consensus 573 lWnikt~eC~~---tlD~H~DrvWaL~~~~~~~~~~tgg~ 609 (775)
T KOG0319|consen 573 LWNIKTNECEM---TLDAHNDRVWALSVSPLLDMFVTGGG 609 (775)
T ss_pred EEeccchhhhh---hhhhccceeEEEeecCccceeEecCC
Confidence 99999999766 88999999999999999995555544
No 39
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=1.7e-19 Score=184.15 Aligned_cols=185 Identities=18% Similarity=0.277 Sum_probs=158.1
Q ss_pred EcCCCEEEEEeCCCeEEEEeCCCC-----CCCCCCCCeEEEEECC-CCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCC
Q 004217 78 RDARRGLASWVEAESLHHLRPKYC-----PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRT 151 (767)
Q Consensus 78 sd~g~~LaSgs~DgsIrlWd~~t~-----~L~gH~~sVtsVaFSp-DG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~ 151 (767)
......+++++.||++++||.... .++.|...|.++.|++ +++.+++++.|++||+||...++.+.+|.||..-
T Consensus 70 e~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~ 149 (311)
T KOG0277|consen 70 ENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSC 149 (311)
T ss_pred CCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccE
Confidence 345677888999999999996543 4779999999999999 7778888999999999999999999999999999
Q ss_pred cEEEEEccCCCcEEEEEeCCCeEEEEECCC-CeEEEeecCCCCeEEEEEcCCC-CEEEEEECCc-EEEEEcCCCccccCC
Q 004217 152 PWVVRFHPLNPTIIASGSLDHEVRLWNAST-AECIGSRDFYRPIASIAFHASG-ELLAVASGHK-LYIWRYNMREETSSP 228 (767)
Q Consensus 152 V~sLafsP~dg~lLaSgS~DGtVrIWDl~t-g~~i~~l~h~~~VtsVafSPdG-~~LAsgSdd~-V~VWDl~t~~~~~~~ 228 (767)
|+...|+|...++++++|.|+++++||++. |+.+....|...|.++.|+.-. +.|++|+-|. |++||+++-+. +.
T Consensus 150 Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~--pl 227 (311)
T KOG0277|consen 150 IYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRT--PL 227 (311)
T ss_pred EEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccc--cc
Confidence 999999999999999999999999999986 4545544588899999998754 5788888665 99999998765 45
Q ss_pred eEEecCCCCeEEEEEccCCCeEEEEEe------eCCcCCCCc
Q 004217 229 RIVLRTRRSLRAVHFHPHAAPLLLTAE------VNDLDSSES 264 (767)
Q Consensus 229 ~~l~~h~~~VtsVaFSPDG~~LlaSgs------vwdl~s~~~ 264 (767)
..+.+|.-.|+.|.|||...-++++++ +|+....+.
T Consensus 228 ~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds 269 (311)
T KOG0277|consen 228 FELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDS 269 (311)
T ss_pred eeecCCceEEEEEecCcchhhHhhhccccceEEecccccchh
Confidence 678999999999999999888888776 777764443
No 40
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.82 E-value=5.7e-20 Score=200.55 Aligned_cols=236 Identities=16% Similarity=0.199 Sum_probs=177.2
Q ss_pred CCCCCCCCeEEEEECC-CCCeEEEEeCCCeEEEEECCC-CeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEEC
Q 004217 102 PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQT-GSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNA 179 (767)
Q Consensus 102 ~L~gH~~sVtsVaFSp-DG~~LASgs~DGtVrVWDl~t-g~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl 179 (767)
.+.+|+..|+++.|.| .+.+|++++.|+.|+||++-. ++++++|.+|..+|..++|+. ++..|+|++.|+.|++||+
T Consensus 209 ~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~-~g~~fLS~sfD~~lKlwDt 287 (503)
T KOG0282|consen 209 NLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNN-CGTSFLSASFDRFLKLWDT 287 (503)
T ss_pred eccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccc-cCCeeeeeecceeeeeecc
Confidence 5779999999999999 999999999999999999976 899999999999999999999 9999999999999999999
Q ss_pred CCCeEEEeecCCCCeEEEEEcCCC-CEEEEEEC-CcEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe--
Q 004217 180 STAECIGSRDFYRPIASIAFHASG-ELLAVASG-HKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-- 255 (767)
Q Consensus 180 ~tg~~i~~l~h~~~VtsVafSPdG-~~LAsgSd-d~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs-- 255 (767)
++|+++..+.....++|+.|+|++ +.+++|+. ++|+.||+++++.++ .+..|-+.|..+.|-++|+++++++.
T Consensus 288 ETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvq---eYd~hLg~i~~i~F~~~g~rFissSDdk 364 (503)
T KOG0282|consen 288 ETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQ---EYDRHLGAILDITFVDEGRRFISSSDDK 364 (503)
T ss_pred ccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHH---HHHhhhhheeeeEEccCCceEeeeccCc
Confidence 999999999999999999999999 56666664 559999999999766 67788999999999999999999887
Q ss_pred ---eCCcCCCCcceeEeecCCC-----ccCCCC----------eEEEecCCCCCCCceeeccCCCCCCce--eeEEecCC
Q 004217 256 ---VNDLDSSESSLTLATSPGY-----WRYPPP----------VICMAGAHSSSHPGLAEEVPLITPPFL--RPSFVRDD 315 (767)
Q Consensus 256 ---vwdl~s~~~~~~l~t~sG~-----~~~p~~----------~v~l~~~~Ssd~~~L~sg~~~~slpil--~psFSpDg 315 (767)
+|+++..-....+....-| ..+|.. .+.+.........+...---+...+.. .+.|||||
T Consensus 365 s~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG 444 (503)
T KOG0282|consen 365 SVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDG 444 (503)
T ss_pred cEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCC
Confidence 6666533322211111111 011111 111111111111111111111223333 68899999
Q ss_pred CEEEEeecCCCCCCcccccccccCCceeeeeccCCCCceeeee
Q 004217 316 ERISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQYELVL 358 (767)
Q Consensus 316 ~rIva~~~~~d~Gs~~~~~~~~ss~~~~l~~~~~~~~q~~~~~ 358 (767)
+.|+. +.+...+.+||..+-+....+
T Consensus 445 ~~l~S-----------------GdsdG~v~~wdwkt~kl~~~l 470 (503)
T KOG0282|consen 445 RTLCS-----------------GDSDGKVNFWDWKTTKLVSKL 470 (503)
T ss_pred CeEEe-----------------ecCCccEEEeechhhhhhhcc
Confidence 99997 344557899999776655555
No 41
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=2.3e-18 Score=177.32 Aligned_cols=183 Identities=21% Similarity=0.289 Sum_probs=155.0
Q ss_pred eEEEEEEcC-CCEEEEEeCCCeEEEEeCCCC-----C--C-CCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCC--e
Q 004217 72 QIFEAGRDA-RRGLASWVEAESLHHLRPKYC-----P--L-SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTG--S 140 (767)
Q Consensus 72 ~~~vA~sd~-g~~LaSgs~DgsIrlWd~~t~-----~--L-~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg--~ 140 (767)
.-.++.... |..|++++.|+.|++|+...+ + + .+|++.|..++|+|.|++|++++.|.++-||.-..+ +
T Consensus 17 ~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efe 96 (312)
T KOG0645|consen 17 VWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFE 96 (312)
T ss_pred EEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCcee
Confidence 344666666 778999999999999999842 1 2 379999999999999999999999999999987654 6
Q ss_pred EEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCC---eEEEee-cCCCCeEEEEEcCCCCEEEEEEC-CcEE
Q 004217 141 CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTA---ECIGSR-DFYRPIASIAFHASGELLAVASG-HKLY 215 (767)
Q Consensus 141 ~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg---~~i~~l-~h~~~VtsVafSPdG~~LAsgSd-d~V~ 215 (767)
++.+|.||...|.+++|++ ++++|++++.|+.|.||.+..+ ++...+ +|...|..+.|||...+|++++. +.|+
T Consensus 97 cv~~lEGHEnEVK~Vaws~-sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk 175 (312)
T KOG0645|consen 97 CVATLEGHENEVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIK 175 (312)
T ss_pred EEeeeeccccceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEE
Confidence 8899999999999999999 9999999999999999999854 345554 48899999999999999999995 5599
Q ss_pred EEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217 216 IWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (767)
Q Consensus 216 VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs 255 (767)
+|+-...........+.+|...|.+++|+++|..|+++..
T Consensus 176 ~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sd 215 (312)
T KOG0645|consen 176 VYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSD 215 (312)
T ss_pred EEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecC
Confidence 9987644433345578899999999999999988887765
No 42
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=1.1e-18 Score=200.17 Aligned_cols=205 Identities=18% Similarity=0.261 Sum_probs=169.7
Q ss_pred EEEEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccC
Q 004217 73 IFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGH 148 (767)
Q Consensus 73 ~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH 148 (767)
.-+++...+-.+.++--.|.|++||...+ ++.+|.++|..++|+|++.+++||++|-+|+||+.++.+|+.++.||
T Consensus 13 KglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GH 92 (1202)
T KOG0292|consen 13 KGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGH 92 (1202)
T ss_pred cceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccc
Confidence 34566778889999999999999999887 57799999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEee-cCCCCeEEEEEcCCCCEEEEEECC-cEEEEEcCCCccc-
Q 004217 149 RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASGH-KLYIWRYNMREET- 225 (767)
Q Consensus 149 ~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l-~h~~~VtsVafSPdG~~LAsgSdd-~V~VWDl~t~~~~- 225 (767)
-+.|..+.||+ .-.+++|+|.|.+|+||+..+++++..+ +|...|.|..|+|....++++|-| +|+|||+..-+..
T Consensus 93 lDYVRt~~FHh-eyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~ 171 (1202)
T KOG0292|consen 93 LDYVRTVFFHH-EYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKN 171 (1202)
T ss_pred cceeEEeeccC-CCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccC
Confidence 99999999999 8899999999999999999999999986 599999999999999999999955 5999998532210
Q ss_pred -------------------------cCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEeecCCCc
Q 004217 226 -------------------------SSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYW 275 (767)
Q Consensus 226 -------------------------~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s~~~~~~l~t~sG~~ 275 (767)
.....+.+|...|+.++|+|.-..+++++. +|.+... ..-.+.+..||.
T Consensus 172 ~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnet-KaWEvDtcrgH~ 250 (1202)
T KOG0292|consen 172 KAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNET-KAWEVDTCRGHY 250 (1202)
T ss_pred CCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccc-cceeehhhhccc
Confidence 012456789999999999999986666555 4433311 112344556665
Q ss_pred cCCC
Q 004217 276 RYPP 279 (767)
Q Consensus 276 ~~p~ 279 (767)
+...
T Consensus 251 nnVs 254 (1202)
T KOG0292|consen 251 NNVS 254 (1202)
T ss_pred CCcc
Confidence 5433
No 43
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.81 E-value=4.6e-18 Score=170.81 Aligned_cols=180 Identities=27% Similarity=0.381 Sum_probs=156.5
Q ss_pred eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEcc
Q 004217 72 QIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHG 147 (767)
Q Consensus 72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~g 147 (767)
...+.+..++..++++..++.|++|+..+. .+..|...|.+++|+|++++|++++.|+.|++||+.+++.+..+..
T Consensus 96 i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~ 175 (289)
T cd00200 96 VSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTG 175 (289)
T ss_pred EEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEec
Confidence 455666666788888888999999999854 3567999999999999999999888899999999999998999999
Q ss_pred CCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEee-cCCCCeEEEEEcCCCCEEEEEE-CCcEEEEEcCCCccc
Q 004217 148 HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREET 225 (767)
Q Consensus 148 H~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l-~h~~~VtsVafSPdG~~LAsgS-dd~V~VWDl~t~~~~ 225 (767)
|...+.++.|+| +++.+++++.|+.|++||+++++.+..+ .+...+.+++|+|++.++++++ ++.|++||+.+++..
T Consensus 176 ~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~ 254 (289)
T cd00200 176 HTGEVNSVAFSP-DGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECV 254 (289)
T ss_pred CccccceEEECC-CcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeE
Confidence 999999999999 7888888888999999999998888887 6888999999999999999888 566999999987654
Q ss_pred cCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217 226 SSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (767)
Q Consensus 226 ~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs 255 (767)
. .+..|...|.+++|+|+++++++++.
T Consensus 255 ~---~~~~~~~~i~~~~~~~~~~~l~~~~~ 281 (289)
T cd00200 255 Q---TLSGHTNSVTSLAWSPDGKRLASGSA 281 (289)
T ss_pred E---EccccCCcEEEEEECCCCCEEEEecC
Confidence 4 45578889999999999997777664
No 44
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.81 E-value=1.9e-18 Score=189.51 Aligned_cols=248 Identities=17% Similarity=0.175 Sum_probs=179.7
Q ss_pred eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC--------CCC-CCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEE
Q 004217 72 QIFEAGRDARRGLASWVEAESLHHLRPKYC--------PLS-PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCL 142 (767)
Q Consensus 72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~--------~L~-gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l 142 (767)
+...++...|-++++|+-|-.|++||+... +|. .....|.++.||+.|..|++.+..-..+|+|-+....+
T Consensus 170 Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~ 249 (641)
T KOG0772|consen 170 VSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIV 249 (641)
T ss_pred EEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCceee
Confidence 666778889999999999999999999753 222 34567999999999999998888889999996543322
Q ss_pred E------------EEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeE-EEeec------CCCCeEEEEEcCCC
Q 004217 143 K------------VLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC-IGSRD------FYRPIASIAFHASG 203 (767)
Q Consensus 143 ~------------~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~-i~~l~------h~~~VtsVafSPdG 203 (767)
. .-+||...+++.+|+|.+.+.|++++.||++||||+...+. ...+. ..-.++.++|+++|
T Consensus 250 e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg 329 (641)
T KOG0772|consen 250 EFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDG 329 (641)
T ss_pred eeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCc
Confidence 2 23689999999999998889999999999999999986443 22232 23468899999999
Q ss_pred CEEEEEECCc-EEEEEcCCCccccCCeEEecCCC--CeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEeecCCCc
Q 004217 204 ELLAVASGHK-LYIWRYNMREETSSPRIVLRTRR--SLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYW 275 (767)
Q Consensus 204 ~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~--~VtsVaFSPDG~~LlaSgs-----vwdl~s~~~~~~l~t~sG~~ 275 (767)
++||+|..|+ |.+||......-........|.. .|++|.||+||++|++-+. +||++......
T Consensus 330 ~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL--------- 400 (641)
T KOG0772|consen 330 KLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPL--------- 400 (641)
T ss_pred chhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccch---------
Confidence 9999999666 99999865543222334556766 8999999999998887554 77777433211
Q ss_pred cCCCCeEEEecCCCCCCCceeeccCCCCCCceeeEEecCCCEEEEeecCCCCCCcccccccccCCceeeeeccCCCCcee
Q 004217 276 RYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQYE 355 (767)
Q Consensus 276 ~~p~~~v~l~~~~Ssd~~~L~sg~~~~slpil~psFSpDg~rIva~~~~~d~Gs~~~~~~~~ss~~~~l~~~~~~~~q~~ 355 (767)
...++.+ ...+.-.++||||++.|+. |++.. .+.....|.|||.-+-+.-
T Consensus 401 ------------------~~~tgL~-t~~~~tdc~FSPd~kli~T-------GtS~~----~~~~~g~L~f~d~~t~d~v 450 (641)
T KOG0772|consen 401 ------------------NVRTGLP-TPFPGTDCCFSPDDKLILT-------GTSAP----NGMTAGTLFFFDRMTLDTV 450 (641)
T ss_pred ------------------hhhcCCC-ccCCCCccccCCCceEEEe-------ccccc----CCCCCceEEEEeccceeeE
Confidence 1111211 1123336899999999886 22221 2233446899998775544
Q ss_pred eee
Q 004217 356 LVL 358 (767)
Q Consensus 356 ~~~ 358 (767)
..|
T Consensus 451 ~ki 453 (641)
T KOG0772|consen 451 YKI 453 (641)
T ss_pred EEe
Confidence 444
No 45
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.81 E-value=2.3e-18 Score=183.68 Aligned_cols=191 Identities=19% Similarity=0.260 Sum_probs=165.1
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCC--------CCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECC--------------
Q 004217 80 ARRGLASWVEAESLHHLRPKYCP--------LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQ-------------- 137 (767)
Q Consensus 80 ~g~~LaSgs~DgsIrlWd~~t~~--------L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~-------------- 137 (767)
....+++++.|+++++|..+.+. -.||.+.|-+++..++|..+++|+.|.+|+||+..
T Consensus 158 ~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~r 237 (423)
T KOG0313|consen 158 SSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRR 237 (423)
T ss_pred ccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhh
Confidence 34579999999999999987652 34999999999999999999999999999999931
Q ss_pred -----------CCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEE
Q 004217 138 -----------TGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELL 206 (767)
Q Consensus 138 -----------tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~L 206 (767)
++.++..+.||+..|.++.|++ ...+++++.|.+|+.||+.++.++..+......+++.++|..++|
T Consensus 238 rk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d--~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll 315 (423)
T KOG0313|consen 238 RKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD--ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLL 315 (423)
T ss_pred hhhhhhhhcccccCceEEecccccceeeEEEcC--CCceEeecccceEEEEEeecccceeeeecCcceeEeeccccccee
Confidence 1235677899999999999987 788999999999999999999999999989999999999999999
Q ss_pred EEEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe------eCCcCCCCcceeEeecCCC
Q 004217 207 AVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE------VNDLDSSESSLTLATSPGY 274 (767)
Q Consensus 207 AsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs------vwdl~s~~~~~~l~t~sG~ 274 (767)
++|+.++ |++||.+++........+.+|.+.|.++.|+|...+++++++ +||++... ..+....+|
T Consensus 316 ~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k--~plydI~~h 388 (423)
T KOG0313|consen 316 ASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK--APLYDIAGH 388 (423)
T ss_pred eecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCC--CcceeeccC
Confidence 9999877 999999988765555778999999999999999999999887 88888644 234444455
No 46
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=2e-18 Score=192.55 Aligned_cols=182 Identities=16% Similarity=0.287 Sum_probs=162.6
Q ss_pred EEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCC-eEEEEEccCC
Q 004217 75 EAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTG-SCLKVLHGHR 149 (767)
Q Consensus 75 vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg-~~l~~L~gH~ 149 (767)
..+-.-...+++|+.|..|++++..+. ++..|.+-|.+++.+|...+++++++|-+||+||.+.+ .+.++|.||.
T Consensus 61 ~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~ 140 (794)
T KOG0276|consen 61 AKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHE 140 (794)
T ss_pred heeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcc
Confidence 334457789999999999999999987 47899999999999999999999999999999999864 6789999999
Q ss_pred CCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec-CCCCeEEEEEcCCC--CEEEEEECCc-EEEEEcCCCccc
Q 004217 150 RTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASG--ELLAVASGHK-LYIWRYNMREET 225 (767)
Q Consensus 150 ~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~-h~~~VtsVafSPdG--~~LAsgSdd~-V~VWDl~t~~~~ 225 (767)
..|.+++|+|.|.+.|+|++.|++|++|.+.+..+..+++ |...|+|++|-+-| .+|++|+||. |+|||..+..++
T Consensus 141 HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV 220 (794)
T KOG0276|consen 141 HYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCV 220 (794)
T ss_pred eEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHH
Confidence 9999999999999999999999999999999988888864 99999999998877 4999999887 999999999987
Q ss_pred cCCeEEecCCCCeEEEEEccCCCeEEEEEeeCCc
Q 004217 226 SSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDL 259 (767)
Q Consensus 226 ~~~~~l~~h~~~VtsVaFSPDG~~LlaSgsvwdl 259 (767)
+ ++.+|...|..+.|+|.-..+++++++..+
T Consensus 221 ~---TLeGHt~Nvs~v~fhp~lpiiisgsEDGTv 251 (794)
T KOG0276|consen 221 Q---TLEGHTNNVSFVFFHPELPIIISGSEDGTV 251 (794)
T ss_pred H---HhhcccccceEEEecCCCcEEEEecCCccE
Confidence 7 889999999999999998866655553333
No 47
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.80 E-value=1.5e-18 Score=175.61 Aligned_cols=197 Identities=21% Similarity=0.221 Sum_probs=162.2
Q ss_pred eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEcc
Q 004217 72 QIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHG 147 (767)
Q Consensus 72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~g 147 (767)
...+...-+|.+..++..|++|++|+...+ ++.+|...|.+++.+.|...|++|+.|..|.+||+++|+.++.|.+
T Consensus 20 V~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rg 99 (307)
T KOG0316|consen 20 VRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRG 99 (307)
T ss_pred eEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeeccc
Confidence 555667789999999999999999999887 5779999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCC--CeEEEeec-CCCCeEEEEEcCCCCEEEEEE-CCcEEEEEcCCCc
Q 004217 148 HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST--AECIGSRD-FYRPIASIAFHASGELLAVAS-GHKLYIWRYNMRE 223 (767)
Q Consensus 148 H~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~t--g~~i~~l~-h~~~VtsVafSPdG~~LAsgS-dd~V~VWDl~t~~ 223 (767)
|.+.|+.++|+. +...+++|+.|.++++||.++ .++++.+. ....|.++... +..|++|+ |+.++.||++.+.
T Consensus 100 H~aqVNtV~fNe-esSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~ 176 (307)
T KOG0316|consen 100 HLAQVNTVRFNE-ESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGT 176 (307)
T ss_pred ccceeeEEEecC-cceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecce
Confidence 999999999999 899999999999999999986 45666664 67788888774 55777887 5559999999997
Q ss_pred cccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCCcC--CCCcceeEeecCCCcc
Q 004217 224 ETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLD--SSESSLTLATSPGYWR 276 (767)
Q Consensus 224 ~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgsvwdl~--s~~~~~~l~t~sG~~~ 276 (767)
... - -...+|++++|++|++..++++-.-.++ ..+....+....||.+
T Consensus 177 l~s---D--y~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn 226 (307)
T KOG0316|consen 177 LSS---D--YFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKN 226 (307)
T ss_pred eeh---h--hcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhccccc
Confidence 633 2 2356999999999999888776422222 2233345555666643
No 48
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.80 E-value=1.2e-18 Score=197.51 Aligned_cols=192 Identities=20% Similarity=0.244 Sum_probs=165.3
Q ss_pred EEcCCCEEEEEeCCCeEEEEeCCCC--------CCCCCCCCeEEEEECC-CCCeEEEEeCCCeEEEEECCCCeE-----E
Q 004217 77 GRDARRGLASWVEAESLHHLRPKYC--------PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSC-----L 142 (767)
Q Consensus 77 ~sd~g~~LaSgs~DgsIrlWd~~t~--------~L~gH~~sVtsVaFSp-DG~~LASgs~DGtVrVWDl~tg~~-----l 142 (767)
..+.|..|++++.|+++++|.++.. +..+|+..|.+++++. ...+|+++|.|+++++|++...+. +
T Consensus 373 ~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~ 452 (775)
T KOG0319|consen 373 VWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIV 452 (775)
T ss_pred ecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccce
Confidence 4467789999999999999987432 3569999999999988 446899999999999999976221 1
Q ss_pred E----EEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEee-cCCCCeEEEEEcCCCCEEEEEECCc-EEE
Q 004217 143 K----VLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASGHK-LYI 216 (767)
Q Consensus 143 ~----~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l-~h~~~VtsVafSPdG~~LAsgSdd~-V~V 216 (767)
. ....|...|++++.+| +..++++||.|++.+||++........+ +|...|.++.|+|..+.++++|.|+ |+|
T Consensus 453 ~~~~~t~~aHdKdIN~Vaia~-ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKI 531 (775)
T KOG0319|consen 453 LTCRYTERAHDKDINCVAIAP-NDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKI 531 (775)
T ss_pred ehhhHHHHhhcccccceEecC-CCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEE
Confidence 1 2357999999999999 9999999999999999999988888876 5999999999999999999999777 999
Q ss_pred EEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEeecC
Q 004217 217 WRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSP 272 (767)
Q Consensus 217 WDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s~~~~~~l~t~s 272 (767)
|.+.+..+.. .+.+|...|..+.|-.+|+.|++++. +|++.+.+|...+..++
T Consensus 532 W~is~fSClk---T~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~ 589 (775)
T KOG0319|consen 532 WSISTFSCLK---TFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHN 589 (775)
T ss_pred EEeccceeee---eecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhcc
Confidence 9999998766 89999999999999999999988776 89998888866665433
No 49
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.80 E-value=2.4e-17 Score=199.47 Aligned_cols=175 Identities=15% Similarity=0.183 Sum_probs=146.8
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECC-CCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcE
Q 004217 79 DARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPW 153 (767)
Q Consensus 79 d~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSp-DG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~ 153 (767)
..+..|++++.|++|++||..++ .+.+|.+.|++++|+| ++.+|++|+.|++|++||+.++..+..+..+ ..|.
T Consensus 543 ~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~ 621 (793)
T PLN00181 543 YIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANIC 621 (793)
T ss_pred CCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeE
Confidence 35788999999999999999876 4679999999999997 8899999999999999999999988888755 6799
Q ss_pred EEEEccCCCcEEEEEeCCCeEEEEECCCCe-EEEe-ecCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCcc---ccC
Q 004217 154 VVRFHPLNPTIIASGSLDHEVRLWNASTAE-CIGS-RDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREE---TSS 227 (767)
Q Consensus 154 sLafsP~dg~lLaSgS~DGtVrIWDl~tg~-~i~~-l~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~---~~~ 227 (767)
++.|++.++.+|++|+.|++|++||+++.+ .+.. ..|...|.++.|. ++.+|++++.|+ |++||++.... ...
T Consensus 622 ~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~ 700 (793)
T PLN00181 622 CVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETP 700 (793)
T ss_pred EEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcc
Confidence 999976579999999999999999998765 3333 4688999999997 678888888665 99999975421 112
Q ss_pred CeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217 228 PRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (767)
Q Consensus 228 ~~~l~~h~~~VtsVaFSPDG~~LlaSgs 255 (767)
...+.+|...+..++|+|++.+|++++.
T Consensus 701 l~~~~gh~~~i~~v~~s~~~~~lasgs~ 728 (793)
T PLN00181 701 LHSFMGHTNVKNFVGLSVSDGYIATGSE 728 (793)
T ss_pred eEEEcCCCCCeeEEEEcCCCCEEEEEeC
Confidence 3467789999999999999997776664
No 50
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.79 E-value=5.7e-18 Score=199.07 Aligned_cols=182 Identities=21% Similarity=0.260 Sum_probs=153.3
Q ss_pred eEEEEEEcCCCEEEEEe--CCCeEEEEeCCC----------------CCCCCCCCCeEEEEECCCCCeEEEEeCCCeEEE
Q 004217 72 QIFEAGRDARRGLASWV--EAESLHHLRPKY----------------CPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKI 133 (767)
Q Consensus 72 ~~~vA~sd~g~~LaSgs--~DgsIrlWd~~t----------------~~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrV 133 (767)
...+....++..+++|+ .|+.+++|+.+. +++..|.+.|+|+.|++||++||+|++|+.|.|
T Consensus 16 IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~i 95 (942)
T KOG0973|consen 16 IFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMI 95 (942)
T ss_pred EEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEE
Confidence 44566778999999999 899999999753 135689999999999999999999999999999
Q ss_pred EECCC------------------CeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEee-cCCCCe
Q 004217 134 IDCQT------------------GSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPI 194 (767)
Q Consensus 134 WDl~t------------------g~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l-~h~~~V 194 (767)
|+... .+++..|.+|...|..++|+| ++.+|++++.|++|.|||.++.++++.+ +|.+.|
T Consensus 96 W~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~V 174 (942)
T KOG0973|consen 96 WERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLV 174 (942)
T ss_pred eeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEEccccceeeeeeecccccc
Confidence 99762 136778899999999999999 9999999999999999999999888876 499999
Q ss_pred EEEEEcCCCCEEEEEECCc-EEEEEcCCCcccc---CCeEEecCCCCeEEEEEccCCCeEEEEE
Q 004217 195 ASIAFHASGELLAVASGHK-LYIWRYNMREETS---SPRIVLRTRRSLRAVHFHPHAAPLLLTA 254 (767)
Q Consensus 195 tsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~---~~~~l~~h~~~VtsVaFSPDG~~LlaSg 254 (767)
-.+.|+|-|+|||+-++|+ |+||++.+..... .++........++.+.|||||++|++.-
T Consensus 175 KGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~n 238 (942)
T KOG0973|consen 175 KGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPN 238 (942)
T ss_pred cceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchh
Confidence 9999999999999999888 9999976643322 1112222355689999999999888743
No 51
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.79 E-value=1.2e-18 Score=182.17 Aligned_cols=182 Identities=19% Similarity=0.228 Sum_probs=158.5
Q ss_pred ceEEEEEEcCCCEEEEEeCCCeEEEEeCCCCC------------CCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCC
Q 004217 71 SQIFEAGRDARRGLASWVEAESLHHLRPKYCP------------LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT 138 (767)
Q Consensus 71 s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~------------L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~t 138 (767)
.+.+..++.++++|++++.||-|.+|+..+++ +.-+..+|.|+.||.|...||+|+.||.|+||.+++
T Consensus 215 h~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~t 294 (508)
T KOG0275|consen 215 HVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIET 294 (508)
T ss_pred chhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEec
Confidence 36677889999999999999999999998874 335788999999999999999999999999999999
Q ss_pred CeEEEEEc-cCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEee-cCCCCeEEEEEcCCCCEEEEEECCc-EE
Q 004217 139 GSCLKVLH-GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASGHK-LY 215 (767)
Q Consensus 139 g~~l~~L~-gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l-~h~~~VtsVafSPdG~~LAsgSdd~-V~ 215 (767)
|.|++.|. .|+..|+++.|+. |+..+++++.|.+++|.-+++|++++.+ +|.+.|+...|.++|.++++++.|+ |+
T Consensus 295 G~ClRrFdrAHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvk 373 (508)
T KOG0275|consen 295 GQCLRRFDRAHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVK 373 (508)
T ss_pred chHHHHhhhhhccCeeEEEEcc-CcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEE
Confidence 99999996 8999999999999 8899999999999999999999999996 5899999999999999999998665 99
Q ss_pred EEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 004217 216 IWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA 254 (767)
Q Consensus 216 VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSg 254 (767)
+|+.++.+++. .....+....|+++..-|.+.--+..|
T Consensus 374 vW~~KtteC~~-Tfk~~~~d~~vnsv~~~PKnpeh~iVC 411 (508)
T KOG0275|consen 374 VWHGKTTECLS-TFKPLGTDYPVNSVILLPKNPEHFIVC 411 (508)
T ss_pred EecCcchhhhh-hccCCCCcccceeEEEcCCCCceEEEE
Confidence 99999998766 222334566888888888665433333
No 52
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.78 E-value=6.7e-19 Score=192.25 Aligned_cols=224 Identities=18% Similarity=0.185 Sum_probs=173.5
Q ss_pred EcCCCEEEEEeCCCeEEEEeCCCC-----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCc
Q 004217 78 RDARRGLASWVEAESLHHLRPKYC-----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTP 152 (767)
Q Consensus 78 sd~g~~LaSgs~DgsIrlWd~~t~-----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V 152 (767)
...+..|.+++.|+.|++|++-.. ++.+|..+|.+++|+.+|..|++++.|+.|++||+++|+++..|. -...+
T Consensus 224 p~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~-~~~~~ 302 (503)
T KOG0282|consen 224 PKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFH-LDKVP 302 (503)
T ss_pred cceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEe-cCCCc
Confidence 347888999999999999999762 588999999999999999999999999999999999999999886 34567
Q ss_pred EEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec-CCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccCCeE
Q 004217 153 WVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRI 230 (767)
Q Consensus 153 ~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~-h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~ 230 (767)
+++.|+|++.+.|++|+.|+.|+.||+++++.++++. |-+.|..+.|-++|+.++++++++ ++||+.+..-.+. ..
T Consensus 303 ~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik--~i 380 (503)
T KOG0282|consen 303 TCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIK--NI 380 (503)
T ss_pred eeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccch--hh
Confidence 8999999777999999999999999999999988875 778999999999999999999887 9999998876654 22
Q ss_pred EecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEeecCCCccCCCCeEEEecCCCCCCCceeeccCCCCCC
Q 004217 231 VLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPP 305 (767)
Q Consensus 231 l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s~~~~~~l~t~sG~~~~p~~~v~l~~~~Ssd~~~L~sg~~~~slp 305 (767)
...+.....++..+|++.++++-+- +..+.............||.- ....+....++|...|.+|..+..+-
T Consensus 381 ~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~v---aGys~~v~fSpDG~~l~SGdsdG~v~ 457 (503)
T KOG0282|consen 381 ADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSV---AGYSCQVDFSPDGRTLCSGDSDGKVN 457 (503)
T ss_pred cchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceec---cCceeeEEEcCCCCeEEeecCCccEE
Confidence 2334456778999999997665332 111111111222233445421 22333444578888888886665554
Q ss_pred ce
Q 004217 306 FL 307 (767)
Q Consensus 306 il 307 (767)
+|
T Consensus 458 ~w 459 (503)
T KOG0282|consen 458 FW 459 (503)
T ss_pred Ee
Confidence 44
No 53
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=2.5e-17 Score=169.69 Aligned_cols=152 Identities=29% Similarity=0.538 Sum_probs=131.9
Q ss_pred CCCCCCCCeEEEEECCC-CCeEEEEeCCCeEEEEECCCC---eEEEEE-ccCCCCcEEEEEccCCCcEEEEEeCCCeEEE
Q 004217 102 PLSPPPRSTIAAAFSPD-GKTLASTHGDHTVKIIDCQTG---SCLKVL-HGHRRTPWVVRFHPLNPTIIASGSLDHEVRL 176 (767)
Q Consensus 102 ~L~gH~~sVtsVaFSpD-G~~LASgs~DGtVrVWDl~tg---~~l~~L-~gH~~~V~sLafsP~dg~lLaSgS~DGtVrI 176 (767)
++.+|++.|..++|+|- |..||+|+.|+.||||+...+ .+...+ .+|+..|.+++|+| .+++|+++|.|.++.|
T Consensus 9 ~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp-~g~~La~aSFD~t~~I 87 (312)
T KOG0645|consen 9 KLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSP-HGRYLASASFDATVVI 87 (312)
T ss_pred eecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecC-CCcEEEEeeccceEEE
Confidence 57899999999999996 889999999999999999853 344444 57999999999999 9999999999999999
Q ss_pred EECCC--CeEEEeec-CCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEE
Q 004217 177 WNAST--AECIGSRD-FYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLL 252 (767)
Q Consensus 177 WDl~t--g~~i~~l~-h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~Lla 252 (767)
|.-.. .+++..++ |...|.+++|+++|++||+++.|+ |.||.+....+......+..|...|..+.|+|... |++
T Consensus 88 w~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~d-lL~ 166 (312)
T KOG0645|consen 88 WKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTED-LLF 166 (312)
T ss_pred eecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcc-eeE
Confidence 98664 45666664 999999999999999999999877 99999997776666678899999999999999988 555
Q ss_pred EEe
Q 004217 253 TAE 255 (767)
Q Consensus 253 Sgs 255 (767)
+++
T Consensus 167 S~S 169 (312)
T KOG0645|consen 167 SCS 169 (312)
T ss_pred Eec
Confidence 554
No 54
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.78 E-value=4.6e-17 Score=179.25 Aligned_cols=227 Identities=19% Similarity=0.209 Sum_probs=167.6
Q ss_pred eEEEEEEcCCCEEEEEeCCCeEEEEeCCCCC----CC---CCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEE-
Q 004217 72 QIFEAGRDARRGLASWVEAESLHHLRPKYCP----LS---PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLK- 143 (767)
Q Consensus 72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~----L~---gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~- 143 (767)
+.++..+++|.++++.+.|++|.+||-++++ |. +|++.|.+++|+||+++|++++.|.++||||+.++++++
T Consensus 193 V~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t 272 (603)
T KOG0318|consen 193 VNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVST 272 (603)
T ss_pred eeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEE
Confidence 6677888999999999999999999999873 44 899999999999999999999999999999997654333
Q ss_pred ------------------------------------------EEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCC
Q 004217 144 ------------------------------------------VLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST 181 (767)
Q Consensus 144 ------------------------------------------~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~t 181 (767)
.+.||...|+++..+| ++++|++|+.||.|.-||..+
T Consensus 273 ~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~-d~~~i~SgsyDG~I~~W~~~~ 351 (603)
T KOG0318|consen 273 WPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSP-DGKTIYSGSYDGHINSWDSGS 351 (603)
T ss_pred eecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcC-CCCEEEeeccCceEEEEecCC
Confidence 3348999999999999 889999999999999999876
Q ss_pred CeEEEe-------------------------------e---------------c--------------------------
Q 004217 182 AECIGS-------------------------------R---------------D-------------------------- 189 (767)
Q Consensus 182 g~~i~~-------------------------------l---------------~-------------------------- 189 (767)
+..-+. + +
T Consensus 352 g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l 431 (603)
T KOG0318|consen 352 GTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLL 431 (603)
T ss_pred ccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEE
Confidence 543100 0 0
Q ss_pred ----------CCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe---
Q 004217 190 ----------FYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE--- 255 (767)
Q Consensus 190 ----------h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs--- 255 (767)
..-...+++++|++..+++|+.|+ |+||.+....... ......|...|++|+||||+.+|+++--
T Consensus 432 ~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~e-e~~~~~h~a~iT~vaySpd~~yla~~Da~rk 510 (603)
T KOG0318|consen 432 QDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKE-EAKLLEHRAAITDVAYSPDGAYLAAGDASRK 510 (603)
T ss_pred ecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccc-eeeeecccCCceEEEECCCCcEEEEeccCCc
Confidence 001123679999999999999665 9999998766433 4467789999999999999997766533
Q ss_pred --eCCcCCCCcceeEeecCCCccCCCCeEEEecCCCCCCCceeeccCCCCCCce
Q 004217 256 --VNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFL 307 (767)
Q Consensus 256 --vwdl~s~~~~~~l~t~sG~~~~p~~~v~l~~~~Ssd~~~L~sg~~~~slpil 307 (767)
+|++...+....- +.-+..++.+++ -+++..++++|+.+...-+|
T Consensus 511 vv~yd~~s~~~~~~~-----w~FHtakI~~~a--WsP~n~~vATGSlDt~Viiy 557 (603)
T KOG0318|consen 511 VVLYDVASREVKTNR-----WAFHTAKINCVA--WSPNNKLVATGSLDTNVIIY 557 (603)
T ss_pred EEEEEcccCceecce-----eeeeeeeEEEEE--eCCCceEEEeccccceEEEE
Confidence 5666543331111 100112223322 25566666666555554444
No 55
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.78 E-value=2.7e-17 Score=189.62 Aligned_cols=247 Identities=20% Similarity=0.243 Sum_probs=191.7
Q ss_pred CCEEEEEeCCCeEEEEeCCCC-----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEE
Q 004217 81 RRGLASWVEAESLHHLRPKYC-----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVV 155 (767)
Q Consensus 81 g~~LaSgs~DgsIrlWd~~t~-----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sL 155 (767)
++.+++++.+++|++|+...+ ++.+|.+.|.+++|..-+.+|++|+.|.+++|||+.+|+|...+.+|...|.++
T Consensus 218 ~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~ 297 (537)
T KOG0274|consen 218 DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCL 297 (537)
T ss_pred cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEE
Confidence 788999999999999999886 388999999999999878899999999999999999999999999999999999
Q ss_pred EEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec-CCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccCCeEEec
Q 004217 156 RFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLR 233 (767)
Q Consensus 156 afsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~-h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~ 233 (767)
...+ ..+++|+.|.+|++||+.++.++..+. |..+|.++..+ +.++++|+.++ |++||+.+++.+. .+.+
T Consensus 298 ~~~~---~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~---sl~g 369 (537)
T KOG0274|consen 298 TIDP---FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLK---SLSG 369 (537)
T ss_pred EccC---ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeee---eecC
Confidence 8855 889999999999999999999999988 99999999997 78899998666 9999999888766 8889
Q ss_pred CCCCeEEEEEccCCCeEEEEEe------eCCcCCC-CcceeEeecCCCcc------------CCCCeEEEecCCCCCCCc
Q 004217 234 TRRSLRAVHFHPHAAPLLLTAE------VNDLDSS-ESSLTLATSPGYWR------------YPPPVICMAGAHSSSHPG 294 (767)
Q Consensus 234 h~~~VtsVaFSPDG~~LlaSgs------vwdl~s~-~~~~~l~t~sG~~~------------~p~~~v~l~~~~Ssd~~~ 294 (767)
|...|+++.+.+. . .+.+++ +||++.. ++...+..+..... ...+.+.+|+........
T Consensus 370 H~~~V~sl~~~~~-~-~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~ 447 (537)
T KOG0274|consen 370 HTGRVYSLIVDSE-N-RLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLRDNFLVSSSADGTIKLWDAEEGECLR 447 (537)
T ss_pred CcceEEEEEecCc-c-eEEeeeeccceEeecCCchhhhhhhhcCCcccccccccccceeEeccccccEEEeecccCceee
Confidence 9999999998775 4 344443 8999877 66555544433321 123456667666665555
Q ss_pred eeeccCCCCCCceeeEEecCCCEEEEeecCCCCCCcccccccccCCceeeeeccCCCCceeeee
Q 004217 295 LAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQYELVL 358 (767)
Q Consensus 295 L~sg~~~~slpil~psFSpDg~rIva~~~~~d~Gs~~~~~~~~ss~~~~l~~~~~~~~q~~~~~ 358 (767)
...+. ....+...++. ...++. ++....+..||..+++.-+.+
T Consensus 448 ~~~~~--~~~~v~~l~~~--~~~il~-----------------s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 448 TLEGR--HVGGVSALALG--KEEILC-----------------SSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred eeccC--CcccEEEeecC--cceEEE-----------------EecCCeeEEEecccCchhhhh
Confidence 55553 11122222222 222332 344556778888887776654
No 56
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.77 E-value=3.1e-18 Score=187.03 Aligned_cols=222 Identities=19% Similarity=0.194 Sum_probs=181.3
Q ss_pred eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC------CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEE
Q 004217 72 QIFEAGRDARRGLASWVEAESLHHLRPKYC------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL 145 (767)
Q Consensus 72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~------~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L 145 (767)
........+++.|++|.+..++.+||+... ++..-.-.+.+++.|||.+..++|..||.|.|||+.+...++.|
T Consensus 468 iRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vrqf 547 (705)
T KOG0639|consen 468 IRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQF 547 (705)
T ss_pred eeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecc
Confidence 555667789999999999999999999765 23344456889999999999999999999999999999999999
Q ss_pred ccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCcc
Q 004217 146 HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREE 224 (767)
Q Consensus 146 ~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~ 224 (767)
+||++.+.||..++ ++..|.+|+.|++||.||+++++.+....+.+.|.++.++|++.+|++|..+. +.|......+.
T Consensus 548 qGhtDGascIdis~-dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~k 626 (705)
T KOG0639|consen 548 QGHTDGASCIDISK-DGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEK 626 (705)
T ss_pred cCCCCCceeEEecC-CCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCccc
Confidence 99999999999999 99999999999999999999999998888999999999999999999999766 88877765543
Q ss_pred ccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCCcCCCCcceeEeecCCCccCCCCeEEEecCCCCCCCceeeccCCCCC
Q 004217 225 TSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITP 304 (767)
Q Consensus 225 ~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgsvwdl~s~~~~~~l~t~sG~~~~p~~~v~l~~~~Ssd~~~L~sg~~~~sl 304 (767)
..+..|.+.|.++.|.+.|+++++++.++-+..|....-- .++- .....
T Consensus 627 ----yqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGa------------siFq---------------skE~S 675 (705)
T KOG0639|consen 627 ----YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA------------SIFQ---------------SKESS 675 (705)
T ss_pred ----eeecccccEEEEEEecccCceeeecCchhhhhhccCcccc------------ceee---------------ccccC
Confidence 3466789999999999999999999986555544331100 1110 01234
Q ss_pred CceeeEEecCCCEEEEeecCC
Q 004217 305 PFLRPSFVRDDERISLQHTEH 325 (767)
Q Consensus 305 pil~psFSpDg~rIva~~~~~ 325 (767)
+++.+-.|.|+++|+.+..+.
T Consensus 676 sVlsCDIS~ddkyIVTGSGdk 696 (705)
T KOG0639|consen 676 SVLSCDISFDDKYIVTGSGDK 696 (705)
T ss_pred cceeeeeccCceEEEecCCCc
Confidence 566677788888888754443
No 57
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.77 E-value=7.5e-17 Score=171.54 Aligned_cols=251 Identities=14% Similarity=0.106 Sum_probs=187.3
Q ss_pred eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEcc
Q 004217 72 QIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHG 147 (767)
Q Consensus 72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~g 147 (767)
..+++...+...+++|+.|..-.+|+..++ ++.+|+++|+++.||.||.+||+|..+|.|+||+..++.....+..
T Consensus 67 vFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~ 146 (399)
T KOG0296|consen 67 VFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQ 146 (399)
T ss_pred eEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeec
Confidence 555666678999999999999999999987 5789999999999999999999999999999999999998888876
Q ss_pred CCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEe-ecCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccc
Q 004217 148 HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-RDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREET 225 (767)
Q Consensus 148 H~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~-l~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~ 225 (767)
.-..+.-+.||| ...+|+.|+.||.+.+|.+.++...+. .+|..++++-.|.|+|+.++++.+++ |++||..++..+
T Consensus 147 e~~dieWl~WHp-~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~ 225 (399)
T KOG0296|consen 147 EVEDIEWLKWHP-RAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPL 225 (399)
T ss_pred ccCceEEEEecc-cccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCcee
Confidence 667888999999 999999999999999999999554444 56999999999999999999999776 999999988653
Q ss_pred cCCe------------------------------------------------EEecCCCCeEEEEEccCCCe--EEEEEe
Q 004217 226 SSPR------------------------------------------------IVLRTRRSLRAVHFHPHAAP--LLLTAE 255 (767)
Q Consensus 226 ~~~~------------------------------------------------~l~~h~~~VtsVaFSPDG~~--LlaSgs 255 (767)
.... ....+...+.+|.|.|.... |++.++
T Consensus 226 ~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~ 305 (399)
T KOG0296|consen 226 HKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGS 305 (399)
T ss_pred EEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhccc
Confidence 2110 00011122233333332221 222222
Q ss_pred ------eCCcCCCCcceeEee---------cC-CCc--cCCCCeEEEecCCCCCCCceeeccCCCCCCceeeEEecCCCE
Q 004217 256 ------VNDLDSSESSLTLAT---------SP-GYW--RYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDER 317 (767)
Q Consensus 256 ------vwdl~s~~~~~~l~t---------~s-G~~--~~p~~~v~l~~~~Ssd~~~L~sg~~~~slpil~psFSpDg~r 317 (767)
+||+..+..+....- .. .+. .-....+..|+..++......+| ...+++-.+++||.++
T Consensus 306 vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l~~~y~G---H~~~Il~f~ls~~~~~ 382 (399)
T KOG0296|consen 306 VDGTIAIYDLAASTLRHICEHEDGVTKLKWLNTDYLLTACANGKVRQWDARTGQLKFTYTG---HQMGILDFALSPQKRL 382 (399)
T ss_pred ccceEEEEecccchhheeccCCCceEEEEEcCcchheeeccCceEEeeeccccceEEEEec---CchheeEEEEcCCCcE
Confidence 677654433221111 11 110 11346678888888887777777 5668888899999999
Q ss_pred EEEeecCCC
Q 004217 318 ISLQHTEHD 326 (767)
Q Consensus 318 Iva~~~~~d 326 (767)
|+....++.
T Consensus 383 vvT~s~D~~ 391 (399)
T KOG0296|consen 383 VVTVSDDNT 391 (399)
T ss_pred EEEecCCCe
Confidence 998665543
No 58
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.77 E-value=1.3e-18 Score=183.35 Aligned_cols=221 Identities=19% Similarity=0.277 Sum_probs=176.5
Q ss_pred CCCCCcceecccccccc-cCCCccCcceeecccccceec-----CCcceEEEEEEcCCCEEEEEeCCCeEEEEeCCCCC-
Q 004217 30 HRNSRLRNVFGLLAQRE-VAPRTKHSSKRLLGETARKCS-----GSFSQIFEAGRDARRGLASWVEAESLHHLRPKYCP- 102 (767)
Q Consensus 30 ~r~sk~rnVf~~~~kre-~~~~~~~~sk~~wd~~~~~~~-----~s~s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~- 102 (767)
.++...+.||.+....+ +-...+....++||.+...|. .+.++++.-. +.+.+++|+.|.+|++||.++++
T Consensus 192 c~Se~skgVYClQYDD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge~ 269 (499)
T KOG0281|consen 192 CRSENSKGVYCLQYDDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGEP 269 (499)
T ss_pred CCcccCCceEEEEecchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccCCch
Confidence 45555666666543332 222333456788998876664 2345666665 56699999999999999999983
Q ss_pred ---CCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCe---EEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEE
Q 004217 103 ---LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS---CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRL 176 (767)
Q Consensus 103 ---L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~---~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrI 176 (767)
+..|...|..+.|+ ..++++++.|.++.|||+.... +.+.+.||...|..+.|+ .+++++++.|.+|++
T Consensus 270 l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd---~kyIVsASgDRTikv 344 (499)
T KOG0281|consen 270 LNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD---DKYIVSASGDRTIKV 344 (499)
T ss_pred hhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc---cceEEEecCCceEEE
Confidence 66999999999998 4699999999999999998654 346778999999999994 579999999999999
Q ss_pred EECCCCeEEEee-cCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 004217 177 WNASTAECIGSR-DFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA 254 (767)
Q Consensus 177 WDl~tg~~i~~l-~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSg 254 (767)
|++.++++++++ +|+..|.|+.+ .|+++++|+.|. |++||+..+..++ .+.+|..-|+++.|. .+.+++++
T Consensus 345 W~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLR---vLeGHEeLvRciRFd--~krIVSGa 417 (499)
T KOG0281|consen 345 WSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLR---VLEGHEELVRCIRFD--NKRIVSGA 417 (499)
T ss_pred Eeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHH---HHhchHHhhhheeec--Cceeeecc
Confidence 999999999996 48999998877 688999998655 9999999999876 889999999999995 45577655
Q ss_pred e-----eCCcCCCCc
Q 004217 255 E-----VNDLDSSES 264 (767)
Q Consensus 255 s-----vwdl~s~~~ 264 (767)
- +||+.....
T Consensus 418 YDGkikvWdl~aald 432 (499)
T KOG0281|consen 418 YDGKIKVWDLQAALD 432 (499)
T ss_pred ccceEEEEecccccC
Confidence 3 788775443
No 59
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.76 E-value=2.3e-18 Score=198.30 Aligned_cols=147 Identities=21% Similarity=0.344 Sum_probs=128.0
Q ss_pred CCC-CCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCC--------------------------------C---------
Q 004217 102 PLS-PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT--------------------------------G--------- 139 (767)
Q Consensus 102 ~L~-gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~t--------------------------------g--------- 139 (767)
++. .|.+.|+++.||+||++||+|+.|+.|+||.+.. .
T Consensus 261 e~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~ 340 (712)
T KOG0283|consen 261 EISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSR 340 (712)
T ss_pred ccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccc
Confidence 355 8999999999999999999999999999998744 0
Q ss_pred -------------------eEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCCCCeEEEEEc
Q 004217 140 -------------------SCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFH 200 (767)
Q Consensus 140 -------------------~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~~VtsVafS 200 (767)
+++..|+||.+.|..+.|+- .++|+|++.|+|||||++...+|++.|.|...|+||+|+
T Consensus 341 ~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK--n~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFn 418 (712)
T KOG0283|consen 341 KGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK--NNFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFN 418 (712)
T ss_pred cccCCccccCCCccccccccchhhhhccchhheeccccc--CCeeEeccccccEEeecCCCcceeeEEecCCeeEEEEec
Confidence 23445679999999999996 789999999999999999999999999999999999999
Q ss_pred C-CCCEEEEEE-CCcEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 004217 201 A-SGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA 254 (767)
Q Consensus 201 P-dG~~LAsgS-dd~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSg 254 (767)
| |.+|+++|+ |++|+||++...+... ...-..-|++++|.|||++.++++
T Consensus 419 PvDDryFiSGSLD~KvRiWsI~d~~Vv~----W~Dl~~lITAvcy~PdGk~avIGt 470 (712)
T KOG0283|consen 419 PVDDRYFISGSLDGKVRLWSISDKKVVD----WNDLRDLITAVCYSPDGKGAVIGT 470 (712)
T ss_pred ccCCCcEeecccccceEEeecCcCeeEe----ehhhhhhheeEEeccCCceEEEEE
Confidence 9 557999999 6669999998876543 344458899999999999877754
No 60
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=4.5e-17 Score=183.23 Aligned_cols=220 Identities=19% Similarity=0.189 Sum_probs=176.7
Q ss_pred cceEEEEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCC-CCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEE
Q 004217 70 FSQIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSP-PPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKV 144 (767)
Q Consensus 70 ~s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~g-H~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~ 144 (767)
.....+....+|..|+.|..+|.|.+||.... .+.+ |...|-+++|+ +..+.+|+.|+.|..+|++..+....
T Consensus 218 ~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~ 295 (484)
T KOG0305|consen 218 ELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVS 295 (484)
T ss_pred CceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhh
Confidence 34777788889999999999999999998765 4666 99999999999 77899999999999999998765544
Q ss_pred -EccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEe-ecCCCCeEEEEEcCCC-CEEEEEEC--Cc-EEEEE
Q 004217 145 -LHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-RDFYRPIASIAFHASG-ELLAVASG--HK-LYIWR 218 (767)
Q Consensus 145 -L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~-l~h~~~VtsVafSPdG-~~LAsgSd--d~-V~VWD 218 (767)
+.+|...|..+.|++ +++++++|+.|+.+.|||....+.+.. .+|..+|..++|+|-. .+||+|++ |+ |++||
T Consensus 296 ~~~~H~qeVCgLkws~-d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn 374 (484)
T KOG0305|consen 296 TLQGHRQEVCGLKWSP-DGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWN 374 (484)
T ss_pred hhhcccceeeeeEECC-CCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEE
Confidence 899999999999999 999999999999999999977666555 5799999999999965 58888873 44 99999
Q ss_pred cCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCCcCCCCcceeEeecCCCccCCCCeEEEecCCCCCCCceeec
Q 004217 219 YNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEE 298 (767)
Q Consensus 219 l~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgsvwdl~s~~~~~~l~t~sG~~~~p~~~v~l~~~~Ssd~~~L~sg 298 (767)
..++..+. .......|.+|.|++..+-|+++-+ | +...+.+|...+.. ....
T Consensus 375 ~~~g~~i~----~vdtgsQVcsL~Wsk~~kEi~sthG------------------~---s~n~i~lw~~ps~~---~~~~ 426 (484)
T KOG0305|consen 375 TNTGARID----SVDTGSQVCSLIWSKKYKELLSTHG------------------Y---SENQITLWKYPSMK---LVAE 426 (484)
T ss_pred cCCCcEec----ccccCCceeeEEEcCCCCEEEEecC------------------C---CCCcEEEEeccccc---eeee
Confidence 99988755 3455789999999999987877643 1 22234444433322 2222
Q ss_pred cCCCCCCceeeEEecCCCEEEE
Q 004217 299 VPLITPPFLRPSFVRDDERISL 320 (767)
Q Consensus 299 ~~~~slpil~psFSpDg~rIva 320 (767)
...+..+++..+.+|||..|+.
T Consensus 427 l~gH~~RVl~la~SPdg~~i~t 448 (484)
T KOG0305|consen 427 LLGHTSRVLYLALSPDGETIVT 448 (484)
T ss_pred ecCCcceeEEEEECCCCCEEEE
Confidence 3335567778889999999987
No 61
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.75 E-value=1.1e-17 Score=181.80 Aligned_cols=178 Identities=18% Similarity=0.232 Sum_probs=149.0
Q ss_pred EcCCCEEEEEeCCCeEEEEeCCCC-----------CCCCCCCCeEEEEECC-CCCeEEEEeCCCeEEEEECC--CCeEEE
Q 004217 78 RDARRGLASWVEAESLHHLRPKYC-----------PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQ--TGSCLK 143 (767)
Q Consensus 78 sd~g~~LaSgs~DgsIrlWd~~t~-----------~L~gH~~sVtsVaFSp-DG~~LASgs~DGtVrVWDl~--tg~~l~ 143 (767)
......|++++.|++|.+||+... .+.+|...|.+++|++ +..+|++++.|+.+.|||++ +.++.+
T Consensus 187 ~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~ 266 (422)
T KOG0264|consen 187 RQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSH 266 (422)
T ss_pred cccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcc
Confidence 344567899999999999999753 2569999999999999 77899999999999999999 566677
Q ss_pred EEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCe-EEEee-cCCCCeEEEEEcCCCC-EEEEEECCc-EEEEEc
Q 004217 144 VLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAE-CIGSR-DFYRPIASIAFHASGE-LLAVASGHK-LYIWRY 219 (767)
Q Consensus 144 ~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~-~i~~l-~h~~~VtsVafSPdG~-~LAsgSdd~-V~VWDl 219 (767)
..++|.+.|++++|+|.++.+||+|+.|++|.+||+|+-+ ++..+ .|...|..|.|+|+.. .||+++.|+ +.|||+
T Consensus 267 ~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDl 346 (422)
T KOG0264|consen 267 SVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDL 346 (422)
T ss_pred cccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEec
Confidence 8899999999999999999999999999999999999743 44444 5999999999999875 677766555 999999
Q ss_pred CCCcccc-----------CCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217 220 NMREETS-----------SPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (767)
Q Consensus 220 ~t~~~~~-----------~~~~l~~h~~~VtsVaFSPDG~~LlaSgs 255 (767)
..-...+ ..+.-.+|...|..+.|+|+..+++++..
T Consensus 347 s~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~Sva 393 (422)
T KOG0264|consen 347 SRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVA 393 (422)
T ss_pred cccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEec
Confidence 7543322 12455678999999999999999888776
No 62
>PTZ00420 coronin; Provisional
Probab=99.75 E-value=1.4e-16 Score=184.44 Aligned_cols=182 Identities=9% Similarity=0.013 Sum_probs=135.8
Q ss_pred ceEEEEEEcC-CCEEEEEeCCCeEEEEeCCCC------------CCCCCCCCeEEEEECCCCCe-EEEEeCCCeEEEEEC
Q 004217 71 SQIFEAGRDA-RRGLASWVEAESLHHLRPKYC------------PLSPPPRSTIAAAFSPDGKT-LASTHGDHTVKIIDC 136 (767)
Q Consensus 71 s~~~vA~sd~-g~~LaSgs~DgsIrlWd~~t~------------~L~gH~~sVtsVaFSpDG~~-LASgs~DGtVrVWDl 136 (767)
....+++... +..|++++.|++|++||+... .+.+|...|.+++|+|++.. |++++.|++|+|||+
T Consensus 76 ~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl 155 (568)
T PTZ00420 76 SILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDI 155 (568)
T ss_pred CEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEEC
Confidence 3556666654 789999999999999998653 25689999999999998875 578999999999999
Q ss_pred CCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec-CCCCeE-----EEEEcCCCCEEEEEE
Q 004217 137 QTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIA-----SIAFHASGELLAVAS 210 (767)
Q Consensus 137 ~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~-h~~~Vt-----sVafSPdG~~LAsgS 210 (767)
.+++.+..+. |...|.+++|+| ++.+|++++.|++|+|||+++++.+..+. |.+.+. ...|++++.+|++++
T Consensus 156 ~tg~~~~~i~-~~~~V~Slswsp-dG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG 233 (568)
T PTZ00420 156 ENEKRAFQIN-MPKKLSSLKWNI-KGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTG 233 (568)
T ss_pred CCCcEEEEEe-cCCcEEEEEECC-CCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEE
Confidence 9998877776 667899999999 89999999999999999999999887764 655443 234568988888876
Q ss_pred CC-----cEEEEEcCCCcc-ccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217 211 GH-----KLYIWRYNMREE-TSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (767)
Q Consensus 211 dd-----~V~VWDl~t~~~-~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs 255 (767)
.+ .|+|||++.... +. ...+..+...+...-..++|.+++++.+
T Consensus 234 ~d~~~~R~VkLWDlr~~~~pl~-~~~ld~~~~~L~p~~D~~tg~l~lsGkG 283 (568)
T PTZ00420 234 FSKNNMREMKLWDLKNTTSALV-TMSIDNASAPLIPHYDESTGLIYLIGKG 283 (568)
T ss_pred cCCCCccEEEEEECCCCCCceE-EEEecCCccceEEeeeCCCCCEEEEEEC
Confidence 33 399999996432 22 1111222233333333445665555444
No 63
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.75 E-value=2.9e-17 Score=171.46 Aligned_cols=244 Identities=16% Similarity=0.175 Sum_probs=186.5
Q ss_pred eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC----------------------CCCCCCCCeEEEEECCCCCeEEEEeCCC
Q 004217 72 QIFEAGRDARRGLASWVEAESLHHLRPKYC----------------------PLSPPPRSTIAAAFSPDGKTLASTHGDH 129 (767)
Q Consensus 72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----------------------~L~gH~~sVtsVaFSpDG~~LASgs~DG 129 (767)
..+.+++.+|..+++|+.|.+|++.|++.. +|..|.+.|+++.|+|....|++|+.|+
T Consensus 115 cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~ 194 (430)
T KOG0640|consen 115 CRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDN 194 (430)
T ss_pred eeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCC
Confidence 566778999999999999999999998620 3568999999999999999999999999
Q ss_pred eEEEEECCCCeEEEEE--ccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEee----cCCCCeEEEEEcCCC
Q 004217 130 TVKIIDCQTGSCLKVL--HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR----DFYRPIASIAFHASG 203 (767)
Q Consensus 130 tVrVWDl~tg~~l~~L--~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l----~h~~~VtsVafSPdG 203 (767)
+|+++|+..-...+.+ ......|.++.||| .+++++.|....++++||+.+.+|...- +|...|+++.+++.|
T Consensus 195 tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHP-sGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~ 273 (430)
T KOG0640|consen 195 TVKLFDFSKTSAKRAFKVFQDTEPVRSISFHP-SGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTG 273 (430)
T ss_pred eEEEEecccHHHHHHHHHhhccceeeeEeecC-CCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCc
Confidence 9999999754322222 22456899999999 9999999999999999999999998763 488999999999999
Q ss_pred CEEEEEECCc-EEEEEcCCCccccCCeEEecC-CCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEeec--CCC
Q 004217 204 ELLAVASGHK-LYIWRYNMREETSSPRIVLRT-RRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATS--PGY 274 (767)
Q Consensus 204 ~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h-~~~VtsVaFSPDG~~LlaSgs-----vwdl~s~~~~~~l~t~--sG~ 274 (767)
++.++++.|+ |++||--..+++. .....| ...|.+..|..+|++++++|. .|.+.++.....+... +|.
T Consensus 274 ~lYvTaSkDG~IklwDGVS~rCv~--t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgr 351 (430)
T KOG0640|consen 274 SLYVTASKDGAIKLWDGVSNRCVR--TIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGR 351 (430)
T ss_pred cEEEEeccCCcEEeeccccHHHHH--HHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccc
Confidence 9999999766 9999988777765 223345 567999999999999999876 8888876655443321 121
Q ss_pred ---------------ccCC---CCeEEEecCCCCCCCceeeccCCCCCCceeeEEecCCCEEEE
Q 004217 275 ---------------WRYP---PPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISL 320 (767)
Q Consensus 275 ---------------~~~p---~~~v~l~~~~Ssd~~~L~sg~~~~slpil~psFSpDg~rIva 320 (767)
+-+| ...++.|+....+...+..- ....++-+..-||.....+.
T Consensus 352 q~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~sl--gHn~a~R~i~HSP~~p~FmT 413 (430)
T KOG0640|consen 352 QKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSL--GHNGAVRWIVHSPVEPAFMT 413 (430)
T ss_pred hhhhhhhhhcCccceEEccccccCceeeccccchhhhhhccc--CCCCCceEEEeCCCCCceee
Confidence 1122 25577788777666555432 23444445555665555554
No 64
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.75 E-value=7.5e-17 Score=168.11 Aligned_cols=167 Identities=23% Similarity=0.287 Sum_probs=137.2
Q ss_pred CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECC-CCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECC
Q 004217 102 PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQ-TGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAS 180 (767)
Q Consensus 102 ~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~-tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~ 180 (767)
.+.+|++.|..+.|+|+|.+||+|+.|..|.+|++. .-+....+++|++.|..+.|.+ +++.+++++.|++|+.||++
T Consensus 42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~-d~s~i~S~gtDk~v~~wD~~ 120 (338)
T KOG0265|consen 42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMR-DGSHILSCGTDKTVRGWDAE 120 (338)
T ss_pred hcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeecc-CCCEEEEecCCceEEEEecc
Confidence 578999999999999999999999999999999964 3455678899999999999999 99999999999999999999
Q ss_pred CCeEEEeec-CCCCeEEEEEcCCCC-EEEEEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe--
Q 004217 181 TAECIGSRD-FYRPIASIAFHASGE-LLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-- 255 (767)
Q Consensus 181 tg~~i~~l~-h~~~VtsVafSPdG~-~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs-- 255 (767)
+|++++.+. |.+-|+++.-+.-|. ++.++++|+ +++||+++...++ ....+..++++.|..++..+++++=
T Consensus 121 tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~----t~~~kyqltAv~f~d~s~qv~sggIdn 196 (338)
T KOG0265|consen 121 TGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIK----TFENKYQLTAVGFKDTSDQVISGGIDN 196 (338)
T ss_pred cceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhh----ccccceeEEEEEecccccceeeccccC
Confidence 999999865 778888887554554 556666666 9999999887655 3344678999999999997777653
Q ss_pred ---eCCcCCCCcceeEeecCCCcc
Q 004217 256 ---VNDLDSSESSLTLATSPGYWR 276 (767)
Q Consensus 256 ---vwdl~s~~~~~~l~t~sG~~~ 276 (767)
+||++..+. +.++.||.+
T Consensus 197 ~ikvWd~r~~d~---~~~lsGh~D 217 (338)
T KOG0265|consen 197 DIKVWDLRKNDG---LYTLSGHAD 217 (338)
T ss_pred ceeeeccccCcc---eEEeecccC
Confidence 777776555 344556643
No 65
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.74 E-value=8.5e-18 Score=191.49 Aligned_cols=182 Identities=19% Similarity=0.240 Sum_probs=157.9
Q ss_pred cCCCEEEEEeCCCeEEEEeCCC---C----CCCCCCCCeEEEEECC-CCCeEEEEeCCCeEEEEECCCCeEEEEEccCCC
Q 004217 79 DARRGLASWVEAESLHHLRPKY---C----PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRR 150 (767)
Q Consensus 79 d~g~~LaSgs~DgsIrlWd~~t---~----~L~gH~~sVtsVaFSp-DG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~ 150 (767)
-....|++++..|.|.+||+.. . .+..|++.|++++|++ ...+|++|+.||+||+||++..+...++.+...
T Consensus 98 ~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSE 177 (839)
T KOG0269|consen 98 LYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSE 177 (839)
T ss_pred chhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccch
Confidence 4567899999999999999986 2 2569999999999999 778999999999999999999988889999889
Q ss_pred CcEEEEEccCCCcEEEEEeCCCeEEEEECCCCe-EEEe-ecCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccC
Q 004217 151 TPWVVRFHPLNPTIIASGSLDHEVRLWNASTAE-CIGS-RDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSS 227 (767)
Q Consensus 151 ~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~-~i~~-l~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~ 227 (767)
.|..|.|+|..++.|+++...|.+++||++... +... ..|.++|.|+.|+|++.+||+|+.|+ |+|||+.+.+..
T Consensus 178 SiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~-- 255 (839)
T KOG0269|consen 178 SIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAK-- 255 (839)
T ss_pred hhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCcc--
Confidence 999999999889999999999999999999754 3444 45999999999999999999999776 999999876542
Q ss_pred CeEEecCCCCeEEEEEccCCCeEEEEEe--------eCCcCCC
Q 004217 228 PRIVLRTRRSLRAVHFHPHAAPLLLTAE--------VNDLDSS 262 (767)
Q Consensus 228 ~~~l~~h~~~VtsVaFSPDG~~LlaSgs--------vwdl~s~ 262 (767)
.........+|..|.|-|+..+.+++++ +||++..
T Consensus 256 ~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRP 298 (839)
T KOG0269|consen 256 PKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRP 298 (839)
T ss_pred ceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccc
Confidence 2344556789999999999999888776 8998853
No 66
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.74 E-value=9.5e-18 Score=180.45 Aligned_cols=238 Identities=16% Similarity=0.148 Sum_probs=185.6
Q ss_pred EEEEcCCCEEEEEeCCCeEEEEeCCCC------CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccC
Q 004217 75 EAGRDARRGLASWVEAESLHHLRPKYC------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGH 148 (767)
Q Consensus 75 vA~sd~g~~LaSgs~DgsIrlWd~~t~------~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH 148 (767)
+.+-.+...|++++.|..|++|+.... .|.+..+.|++++|.++++++++++.|+.+++|++...+...+|.||
T Consensus 181 v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGH 260 (459)
T KOG0288|consen 181 VEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGH 260 (459)
T ss_pred eEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhccc
Confidence 445567788999999999999998765 46678889999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEECC-cEEEEEcCCCccccC
Q 004217 149 RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGH-KLYIWRYNMREETSS 227 (767)
Q Consensus 149 ~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSdd-~V~VWDl~t~~~~~~ 227 (767)
++.|+++.|.. ....+++|+.|.+|++||+.+..|.++.-....+..|+.+ +..+++|-.| +|++||.+......
T Consensus 261 tdkVt~ak~~~-~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~- 336 (459)
T KOG0288|consen 261 TDKVTAAKFKL-SHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTR- 336 (459)
T ss_pred ccceeeehhhc-cccceeeccccchhhhhhhhhhheeccccccccccceEec--ceeeeecccccceEEEeccCCceee-
Confidence 99999999988 5555999999999999999999999998777777777765 4456666544 49999999987644
Q ss_pred CeEEecCCCCeEEEEEccCCCeEEEEEeeCCcCCCCcceeEeecCCCccCCCCeEEEecCCCCCCCceeeccCCCCCCce
Q 004217 228 PRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFL 307 (767)
Q Consensus 228 ~~~l~~h~~~VtsVaFSPDG~~LlaSgsvwdl~s~~~~~~l~t~sG~~~~p~~~v~l~~~~Ssd~~~L~sg~~~~slpil 307 (767)
.... .+.|+++..++++..+++++..+.++..+.. ++ .++ +..+.+......-|
T Consensus 337 --sv~~-gg~vtSl~ls~~g~~lLsssRDdtl~viDlR-------t~------eI~----------~~~sA~g~k~asDw 390 (459)
T KOG0288|consen 337 --SVPL-GGRVTSLDLSMDGLELLSSSRDDTLKVIDLR-------TK------EIR----------QTFSAEGFKCASDW 390 (459)
T ss_pred --Eeec-CcceeeEeeccCCeEEeeecCCCceeeeecc-------cc------cEE----------EEeecccccccccc
Confidence 3333 4599999999999998888665544422210 00 000 11111111111225
Q ss_pred -eeEEecCCCEEEEeecCCCCCCcccccccccCCceeeeeccCCCCceeeeec
Q 004217 308 -RPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQYELVLS 359 (767)
Q Consensus 308 -~psFSpDg~rIva~~~~~d~Gs~~~~~~~~ss~~~~l~~~~~~~~q~~~~~~ 359 (767)
.+.||||++++++ +|+...+..|+..+++.+..++
T Consensus 391 trvvfSpd~~YvaA-----------------GS~dgsv~iW~v~tgKlE~~l~ 426 (459)
T KOG0288|consen 391 TRVVFSPDGSYVAA-----------------GSADGSVYIWSVFTGKLEKVLS 426 (459)
T ss_pred ceeEECCCCceeee-----------------ccCCCcEEEEEccCceEEEEec
Confidence 6899999999997 4566679999999999999885
No 67
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.74 E-value=3.2e-17 Score=174.81 Aligned_cols=183 Identities=17% Similarity=0.303 Sum_probs=153.6
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCC--------------------CCCCCCCCeEEEEECC-CCCeEEEEeCCCeEEEEECC
Q 004217 79 DARRGLASWVEAESLHHLRPKYC--------------------PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQ 137 (767)
Q Consensus 79 d~g~~LaSgs~DgsIrlWd~~t~--------------------~L~gH~~sVtsVaFSp-DG~~LASgs~DGtVrVWDl~ 137 (767)
.+....++|++.|.|++|++... ++.+|...=++++||| .-..|++|..-+.|++|...
T Consensus 163 ~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~ 242 (440)
T KOG0302|consen 163 GNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPS 242 (440)
T ss_pred CCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEeeeec
Confidence 35677889999999999998531 2558998899999999 33357788888899999998
Q ss_pred CCeEE---EEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCC---eEEEeecCCCCeEEEEEcCCCCEEEEEEC
Q 004217 138 TGSCL---KVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTA---ECIGSRDFYRPIASIAFHASGELLAVASG 211 (767)
Q Consensus 138 tg~~l---~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg---~~i~~l~h~~~VtsVafSPdG~~LAsgSd 211 (767)
+|.-. ..|.+|+..|-.++|+|.....|+|||-||+|+|||++.+ .++....|.+.|+.|.|+.+-.+||+|+|
T Consensus 243 ~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~D 322 (440)
T KOG0302|consen 243 TGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGD 322 (440)
T ss_pred cCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCC
Confidence 87633 4567899999999999988899999999999999999988 55666679999999999999889999998
Q ss_pred Cc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe------eCCcCC
Q 004217 212 HK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE------VNDLDS 261 (767)
Q Consensus 212 d~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs------vwdl~s 261 (767)
++ ++|||+++.+...+...+..|..+|++|.|+|.....+++++ +||+..
T Consensus 323 dGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 323 DGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred CceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 77 999999988776667788999999999999997765555443 788763
No 68
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.73 E-value=5.1e-16 Score=159.44 Aligned_cols=188 Identities=17% Similarity=0.221 Sum_probs=160.1
Q ss_pred EEEEEEcCCCEEEEEeCCCeEEEEeCCCC------CCCCCCCCeEEEEECC-CCCeEEEEeCCCeEEEEECCCCeEEEEE
Q 004217 73 IFEAGRDARRGLASWVEAESLHHLRPKYC------PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCLKVL 145 (767)
Q Consensus 73 ~~vA~sd~g~~LaSgs~DgsIrlWd~~t~------~L~gH~~sVtsVaFSp-DG~~LASgs~DGtVrVWDl~tg~~l~~L 145 (767)
-.++...+|..|++++-|+++++|+++.. ...+|.+.|-.++|+| ...+|++++.|.+|++||++.+++....
T Consensus 24 ~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i 103 (313)
T KOG1407|consen 24 HSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARI 103 (313)
T ss_pred eEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEe
Confidence 34677789999999999999999999765 3569999999999999 7789999999999999999999999888
Q ss_pred ccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEEC-CcEEEEEcCCCcc
Q 004217 146 HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG-HKLYIWRYNMREE 224 (767)
Q Consensus 146 ~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSd-d~V~VWDl~t~~~ 224 (767)
....+.+ -+.|+| ++++++.++.|..|.+.|.++.+.+...+....+..++|+-++.+++...+ +.|.|......+.
T Consensus 104 ~~~~eni-~i~wsp-~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkp 181 (313)
T KOG1407|consen 104 ETKGENI-NITWSP-DGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKP 181 (313)
T ss_pred eccCcce-EEEEcC-CCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEecccccc
Confidence 7555554 578999 999999999999999999999999999888889999999977776555554 6699998887665
Q ss_pred ccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcc
Q 004217 225 TSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESS 265 (767)
Q Consensus 225 ~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s~~~~ 265 (767)
+. .+..|.....+|.|+|+|+++++++. .||++..-+.
T Consensus 182 v~---si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~ 224 (313)
T KOG1407|consen 182 VQ---SIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICE 224 (313)
T ss_pred cc---ccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhh
Confidence 44 78899999999999999999887654 8888754443
No 69
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=4.3e-17 Score=182.07 Aligned_cols=180 Identities=16% Similarity=0.181 Sum_probs=158.6
Q ss_pred eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC-----CCCCCCCCeEEEEECC-CCCeEEEEeCCCeEEEEECCCCeEEEEE
Q 004217 72 QIFEAGRDARRGLASWVEAESLHHLRPKYC-----PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCLKVL 145 (767)
Q Consensus 72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~-----~L~gH~~sVtsVaFSp-DG~~LASgs~DGtVrVWDl~tg~~l~~L 145 (767)
..+++..+..-.+.+.+.|-+|++||-+.. .+.||..-|.+++|+| |.+.+|+++-|++||||.+.+..+..+|
T Consensus 100 IR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl 179 (794)
T KOG0276|consen 100 IRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTL 179 (794)
T ss_pred eeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceee
Confidence 677888888999999999999999999864 6889999999999999 8899999999999999999999999999
Q ss_pred ccCCCCcEEEEEccC-CCcEEEEEeCCCeEEEEECCCCeEEEeec-CCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCC
Q 004217 146 HGHRRTPWVVRFHPL-NPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGHK-LYIWRYNMR 222 (767)
Q Consensus 146 ~gH~~~V~sLafsP~-dg~lLaSgS~DGtVrIWDl~tg~~i~~l~-h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~ 222 (767)
+||...|+++.|-+. +..+|+||+.|.+|+|||..+..|+.+++ |...|..+.|+|.-.++++|+.|+ ++||+..+-
T Consensus 180 ~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty 259 (794)
T KOG0276|consen 180 EGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTY 259 (794)
T ss_pred eccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcce
Confidence 999999999999872 23499999999999999999999999986 999999999999999999999766 999998887
Q ss_pred ccccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 004217 223 EETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA 254 (767)
Q Consensus 223 ~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSg 254 (767)
+... .+.-....|++|+-.+.+..++++-
T Consensus 260 ~lE~---tLn~gleRvW~I~~~k~~~~i~vG~ 288 (794)
T KOG0276|consen 260 KLEK---TLNYGLERVWCIAAHKGDGKIAVGF 288 (794)
T ss_pred ehhh---hhhcCCceEEEEeecCCCCeEEEec
Confidence 6544 3444567889999888877655543
No 70
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=1.1e-16 Score=180.12 Aligned_cols=179 Identities=18% Similarity=0.258 Sum_probs=160.0
Q ss_pred CCCEEEEEeCCCeEEEEeCCCC-----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEE
Q 004217 80 ARRGLASWVEAESLHHLRPKYC-----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWV 154 (767)
Q Consensus 80 ~g~~LaSgs~DgsIrlWd~~t~-----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~s 154 (767)
....+.+|+.|+.|..+|+... .+.+|...|..++|++|+++||+|+.|+.|.|||......+..+..|++.|.+
T Consensus 269 ~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA 348 (484)
T KOG0305|consen 269 NSSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKA 348 (484)
T ss_pred cCceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeE
Confidence 4778889999999999999765 37789999999999999999999999999999999888888999999999999
Q ss_pred EEEccCCCcEEEEEe--CCCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEE---CCcEEEEEcCCCccccCCe
Q 004217 155 VRFHPLNPTIIASGS--LDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS---GHKLYIWRYNMREETSSPR 229 (767)
Q Consensus 155 LafsP~dg~lLaSgS--~DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgS---dd~V~VWDl~t~~~~~~~~ 229 (767)
++|+|....+||+|+ .|+.|++||..+++.+..+.....|.++.|++..+-|+++. ++.|.||++.+.+.+.
T Consensus 349 ~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~--- 425 (484)
T KOG0305|consen 349 LAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVA--- 425 (484)
T ss_pred eeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceee---
Confidence 999998899999964 69999999999999999999999999999999998777665 3449999999877554
Q ss_pred EEecCCCCeEEEEEccCCCeEEEEEeeCCcCC
Q 004217 230 IVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDS 261 (767)
Q Consensus 230 ~l~~h~~~VtsVaFSPDG~~LlaSgsvwdl~s 261 (767)
.+.+|...|..++++|||..+++++.+-.++.
T Consensus 426 ~l~gH~~RVl~la~SPdg~~i~t~a~DETlrf 457 (484)
T KOG0305|consen 426 ELLGHTSRVLYLALSPDGETIVTGAADETLRF 457 (484)
T ss_pred eecCCcceeEEEEECCCCCEEEEecccCcEEe
Confidence 88999999999999999999988877444443
No 71
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.73 E-value=3.8e-16 Score=163.79 Aligned_cols=182 Identities=19% Similarity=0.201 Sum_probs=153.2
Q ss_pred eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCC--eEEEEeCCCeEEEEECCCCeEEEEE
Q 004217 72 QIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGK--TLASTHGDHTVKIIDCQTGSCLKVL 145 (767)
Q Consensus 72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~--~LASgs~DGtVrVWDl~tg~~l~~L 145 (767)
..++|. ++.++++|+.|.+|++||+... .+..|.+.|+++.|.++-. .|++|+.||.|.+|+.....++..+
T Consensus 46 itavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~sl 123 (362)
T KOG0294|consen 46 ITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSL 123 (362)
T ss_pred eeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeee
Confidence 455555 9999999999999999999875 5778999999999999665 8999999999999999999999999
Q ss_pred ccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEECCcEEEEEcCCCccc
Q 004217 146 HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREET 225 (767)
Q Consensus 146 ~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSdd~V~VWDl~t~~~~ 225 (767)
++|++.|+.++.|| .+++.++.+.|+.+++||+-.|+.-..+......+.+.|+|.|.+++.+..++|-+|.+.+....
T Consensus 124 K~H~~~Vt~lsiHP-S~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~ 202 (362)
T KOG0294|consen 124 KAHKGQVTDLSIHP-SGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVF 202 (362)
T ss_pred cccccccceeEecC-CCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHh
Confidence 99999999999999 99999999999999999999998877766666666799999999999999999999999887654
Q ss_pred cCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCcCC
Q 004217 226 SSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDS 261 (767)
Q Consensus 226 ~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s 261 (767)
. .......+.++.|-..+ .++++++ .||.+.
T Consensus 203 ~----~i~~~~r~l~~~~l~~~-~L~vG~d~~~i~~~D~ds 238 (362)
T KOG0294|consen 203 R----EIENPKRILCATFLDGS-ELLVGGDNEWISLKDTDS 238 (362)
T ss_pred h----hhhccccceeeeecCCc-eEEEecCCceEEEeccCC
Confidence 3 12223557777777444 4666655 455554
No 72
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.73 E-value=2.7e-16 Score=178.67 Aligned_cols=245 Identities=17% Similarity=0.203 Sum_probs=191.7
Q ss_pred cceeecccccceec---CCcceEEEEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEe
Q 004217 54 SSKRLLGETARKCS---GSFSQIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTH 126 (767)
Q Consensus 54 ~sk~~wd~~~~~~~---~s~s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs 126 (767)
.+-++|......|. .....++..+.+++..++.|...|.+.++|+... +...|.+.|+.++.+||++.+++|+
T Consensus 394 ~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~s 473 (888)
T KOG0306|consen 394 ESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGS 473 (888)
T ss_pred CcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEec
Confidence 56788987765554 2234677778899999999999999999999875 4679999999999999999999999
Q ss_pred CCCeEEEEECCC-----CeEEE--EEc-----cCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEe-ecCCCC
Q 004217 127 GDHTVKIIDCQT-----GSCLK--VLH-----GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-RDFYRP 193 (767)
Q Consensus 127 ~DGtVrVWDl~t-----g~~l~--~L~-----gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~-l~h~~~ 193 (767)
.|.+|++||+.- |...+ .++ .-...|.|++++| |+++|+.+-.|++|++|-+.+-+-... ++|.-+
T Consensus 474 aDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Sp-dgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLP 552 (888)
T KOG0306|consen 474 ADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSP-DGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLP 552 (888)
T ss_pred CCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcC-CCcEEEEEeccCeEEEEEecceeeeeeecccccc
Confidence 999999999741 21111 111 2356899999999 999999999999999999999887655 689999
Q ss_pred eEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCCcCCC--CcceeEee
Q 004217 194 IASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSS--ESSLTLAT 270 (767)
Q Consensus 194 VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgsvwdl~s~--~~~~~l~t 270 (767)
|.|+..+||++++++|+.|+ |+||-++-+.+-+ .+.+|.+.|.+|.|-|+...+++++++-.++.| +....+..
T Consensus 553 V~smDIS~DSklivTgSADKnVKiWGLdFGDCHK---S~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~ 629 (888)
T KOG0306|consen 553 VLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHK---SFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQK 629 (888)
T ss_pred eeEEeccCCcCeEEeccCCCceEEeccccchhhh---hhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhhee
Confidence 99999999999999999877 9999999998655 788999999999999988877777776665555 33445555
Q ss_pred cCCCccCCCCeEEEecCCCCCCCceeeccCCCCCCce
Q 004217 271 SPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFL 307 (767)
Q Consensus 271 ~sG~~~~p~~~v~l~~~~Ssd~~~L~sg~~~~slpil 307 (767)
+.||.. .+-+++. ++++..+.+++.+.++++|
T Consensus 630 L~~H~~---ev~cLav--~~~G~~vvs~shD~sIRlw 661 (888)
T KOG0306|consen 630 LDGHHS---EVWCLAV--SPNGSFVVSSSHDKSIRLW 661 (888)
T ss_pred eccchh---eeeeeEE--cCCCCeEEeccCCceeEee
Confidence 666632 2333333 4455556666555555555
No 73
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.72 E-value=3.6e-15 Score=155.43 Aligned_cols=250 Identities=15% Similarity=0.175 Sum_probs=168.7
Q ss_pred CEEEEEeCCCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCeE-EEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEE
Q 004217 82 RGLASWVEAESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTL-ASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVR 156 (767)
Q Consensus 82 ~~LaSgs~DgsIrlWd~~t~~----L~gH~~sVtsVaFSpDG~~L-ASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLa 156 (767)
..+++.+.|+.|++||..+++ +..+ ..+.+++|+||++.+ ++++.|+.|++||..+++.+..+..+.. +..+.
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~ 79 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFA 79 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECC-CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEE
Confidence 456788899999999998763 3333 447789999999977 5667889999999999988877765544 56789
Q ss_pred EccCCCcEE-EEEeCCCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEECCc--EEEEEcCCCccccCCeEEec
Q 004217 157 FHPLNPTII-ASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHK--LYIWRYNMREETSSPRIVLR 233 (767)
Q Consensus 157 fsP~dg~lL-aSgS~DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSdd~--V~VWDl~t~~~~~~~~~l~~ 233 (767)
|+| +++.+ +++..|+.|++||+.+.+.+..+.....+.+++|+|+|+++++++.+. +.+||.++.+... .. .
T Consensus 80 ~~~-~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~---~~-~ 154 (300)
T TIGR03866 80 LHP-NGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVD---NV-L 154 (300)
T ss_pred ECC-CCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEE---EE-E
Confidence 999 66655 555678999999999988888777666678899999999999888653 7888988765433 11 2
Q ss_pred CCCCeEEEEEccCCCeEEEEEe------eCCcCCCCcceeEeecC-C----C-----ccC-C-----------CCeEEEe
Q 004217 234 TRRSLRAVHFHPHAAPLLLTAE------VNDLDSSESSLTLATSP-G----Y-----WRY-P-----------PPVICMA 285 (767)
Q Consensus 234 h~~~VtsVaFSPDG~~LlaSgs------vwdl~s~~~~~~l~t~s-G----~-----~~~-p-----------~~~v~l~ 285 (767)
....+..++|+|+|+++++++. +||+..++....+.... + . ..+ + ...+.++
T Consensus 155 ~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~ 234 (300)
T TIGR03866 155 VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVV 234 (300)
T ss_pred cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEE
Confidence 2345678999999998876543 78887654433222100 0 0 000 1 1122333
Q ss_pred cCCCCCCCceeeccCCCCCCceeeEEecCCCEEEEeecCCCCCCcccccccccCCceeeeeccCCCCceeeee
Q 004217 286 GAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQYELVL 358 (767)
Q Consensus 286 ~~~Ssd~~~L~sg~~~~slpil~psFSpDg~rIva~~~~~d~Gs~~~~~~~~ss~~~~l~~~~~~~~q~~~~~ 358 (767)
+..+....... ......+.++|+||+++|++.. .....+..||..+++.-..+
T Consensus 235 d~~~~~~~~~~----~~~~~~~~~~~~~~g~~l~~~~----------------~~~~~i~v~d~~~~~~~~~~ 287 (300)
T TIGR03866 235 DAKTYEVLDYL----LVGQRVWQLAFTPDEKYLLTTN----------------GVSNDVSVIDVAALKVIKSI 287 (300)
T ss_pred ECCCCcEEEEE----EeCCCcceEEECCCCCEEEEEc----------------CCCCeEEEEECCCCcEEEEE
Confidence 32221111110 0112355788999999988611 12345889999998876666
No 74
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.72 E-value=1e-16 Score=164.52 Aligned_cols=217 Identities=17% Similarity=0.225 Sum_probs=171.9
Q ss_pred CCCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEE--EEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEE
Q 004217 101 CPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLK--VLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWN 178 (767)
Q Consensus 101 ~~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~--~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWD 178 (767)
.++.+|...|.+|+|+.+|..|++|+.|+++++|+++..+... ..++|.+.|..++|+|.+.++|++++.|++|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 4677899999999999999999999999999999998876543 34789999999999998999999999999999999
Q ss_pred CCCCeEEEeecCCCCeEEEEEcCCCCEEEEEEC-CcEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEeeC
Q 004217 179 ASTAECIGSRDFYRPIASIAFHASGELLAVASG-HKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVN 257 (767)
Q Consensus 179 l~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSd-d~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgsvw 257 (767)
++.++++..+.....-.-+.|+|+|+++++++. |.|.+.|.++.+... .......+..++|+-++..++.+.+..
T Consensus 94 ~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~----~~~~~~e~ne~~w~~~nd~Fflt~GlG 169 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVN----EEQFKFEVNEISWNNSNDLFFLTNGLG 169 (313)
T ss_pred eccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceee----hhcccceeeeeeecCCCCEEEEecCCc
Confidence 999999999888877778999999999999984 559999999876543 233455788999998888777665433
Q ss_pred CcCC--CCcceeEeecCCCccCCCCeEEEecCCCCCCCceeeccCCCCCCceeeEEecCCCEEEEeecCCCCCCcccccc
Q 004217 258 DLDS--SESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQS 335 (767)
Q Consensus 258 dl~s--~~~~~~l~t~sG~~~~p~~~v~l~~~~Ssd~~~L~sg~~~~slpil~psFSpDg~rIva~~~~~d~Gs~~~~~~ 335 (767)
.+.. ......+.+. ...+..++...|+|+|+++++
T Consensus 170 ~v~ILsypsLkpv~si----------------------------~AH~snCicI~f~p~GryfA~--------------- 206 (313)
T KOG1407|consen 170 CVEILSYPSLKPVQSI----------------------------KAHPSNCICIEFDPDGRYFAT--------------- 206 (313)
T ss_pred eEEEEecccccccccc----------------------------ccCCcceEEEEECCCCceEee---------------
Confidence 2221 1111111111 223455667899999999998
Q ss_pred cccCCceeeeeccCCCCceeeeeccCC-CCCC
Q 004217 336 LRSSSSVRLLTYSTPSGQYELVLSPIA-SNRS 366 (767)
Q Consensus 336 ~~ss~~~~l~~~~~~~~q~~~~~~p~~-p~~~ 366 (767)
+++...+-.||.+-.-++++|+-+| |.|.
T Consensus 207 --GsADAlvSLWD~~ELiC~R~isRldwpVRT 236 (313)
T KOG1407|consen 207 --GSADALVSLWDVDELICERCISRLDWPVRT 236 (313)
T ss_pred --ccccceeeccChhHhhhheeeccccCceEE
Confidence 3444567789999999999999888 6653
No 75
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.72 E-value=8.1e-17 Score=182.90 Aligned_cols=188 Identities=18% Similarity=0.242 Sum_probs=165.4
Q ss_pred EEEEEEcCCCEEEEEeCCCeEEEEeCCCC----------------CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEEC
Q 004217 73 IFEAGRDARRGLASWVEAESLHHLRPKYC----------------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDC 136 (767)
Q Consensus 73 ~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----------------~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl 136 (767)
-.++...++...++++.|++|++||.+.. +...-+..|.|+++||||++||.+--|.+|+||-+
T Consensus 458 Wsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyfl 537 (888)
T KOG0306|consen 458 WSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFL 537 (888)
T ss_pred eeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEe
Confidence 34556788999999999999999998532 11134567999999999999999999999999999
Q ss_pred CCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEe-ecCCCCeEEEEEcCCCCEEEEEECCc-E
Q 004217 137 QTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-RDFYRPIASIAFHASGELLAVASGHK-L 214 (767)
Q Consensus 137 ~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~-l~h~~~VtsVafSPdG~~LAsgSdd~-V 214 (767)
++-+....+-||+-+|.++..+| +++++++||.|++|++|-+.-|.|-+. +.|.+.|.++.|-|+..++.+++.|+ |
T Consensus 538 DtlKFflsLYGHkLPV~smDIS~-DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kv 616 (888)
T KOG0306|consen 538 DTLKFFLSLYGHKLPVLSMDISP-DSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKV 616 (888)
T ss_pred cceeeeeeecccccceeEEeccC-CcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceE
Confidence 99999999999999999999999 999999999999999999999999887 57999999999999988888888655 9
Q ss_pred EEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCCcCCCCc
Q 004217 215 YIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSES 264 (767)
Q Consensus 215 ~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgsvwdl~s~~~ 264 (767)
+-||-...+.++ .+.+|...|++++.+|+|.++++++.+..++-|+.
T Consensus 617 KqWDg~kFe~iq---~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~ 663 (888)
T KOG0306|consen 617 KQWDGEKFEEIQ---KLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWER 663 (888)
T ss_pred Eeechhhhhhhe---eeccchheeeeeEEcCCCCeEEeccCCceeEeeec
Confidence 999998888665 88999999999999999998888877666665543
No 76
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.71 E-value=3.5e-16 Score=169.27 Aligned_cols=193 Identities=15% Similarity=0.127 Sum_probs=168.1
Q ss_pred eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEcc
Q 004217 72 QIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHG 147 (767)
Q Consensus 72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~g 147 (767)
...+-.......+.+|..|+.+-++|.... .+.||...|+.+.|+++...+++++.|..|+||......+......
T Consensus 222 i~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~ 301 (506)
T KOG0289|consen 222 ITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRP 301 (506)
T ss_pred eeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccccc
Confidence 334444444688999999999999999876 4789999999999999999999999999999999988777788889
Q ss_pred CCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCC---CCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCc
Q 004217 148 HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFY---RPIASIAFHASGELLAVASGHK-LYIWRYNMRE 223 (767)
Q Consensus 148 H~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~---~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~ 223 (767)
|..+|+.+..+| .+++|++++.|++..+.|++++.++....+. -.+++.+|||||.+|.+|..|+ |+|||+..+.
T Consensus 302 h~~~V~~ls~h~-tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~ 380 (506)
T KOG0289|consen 302 HEEPVTGLSLHP-TGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQT 380 (506)
T ss_pred ccccceeeeecc-CCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCcc
Confidence 999999999999 9999999999999999999999988876553 3589999999999999999776 9999999888
Q ss_pred cccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeE
Q 004217 224 ETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTL 268 (767)
Q Consensus 224 ~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s~~~~~~l 268 (767)
... .+.+|.++|.+|+|+-+|.||++++. .||++......++
T Consensus 381 ~~a---~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~ 427 (506)
T KOG0289|consen 381 NVA---KFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTI 427 (506)
T ss_pred ccc---cCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhccccee
Confidence 544 78889999999999999999999876 7888865544333
No 77
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.71 E-value=3.6e-16 Score=170.16 Aligned_cols=184 Identities=19% Similarity=0.271 Sum_probs=153.5
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCC--------------CCCCCCCCeEEEEECC-CCCeEEEEeCCCeEEEEECCCCe---
Q 004217 79 DARRGLASWVEAESLHHLRPKYC--------------PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGS--- 140 (767)
Q Consensus 79 d~g~~LaSgs~DgsIrlWd~~t~--------------~L~gH~~sVtsVaFSp-DG~~LASgs~DGtVrVWDl~tg~--- 140 (767)
.+...+++.+..+.|.+||.... +|.+|...-.++.|++ ..-.|++++.|++|.+||+....
T Consensus 135 Qnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~ 214 (422)
T KOG0264|consen 135 QNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKED 214 (422)
T ss_pred CCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCC
Confidence 35567778899999999998642 4678999889999999 55689999999999999996532
Q ss_pred ----EEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCC--CeEEEe-ecCCCCeEEEEEcCCCC-EEEEEECC
Q 004217 141 ----CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST--AECIGS-RDFYRPIASIAFHASGE-LLAVASGH 212 (767)
Q Consensus 141 ----~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~t--g~~i~~-l~h~~~VtsVafSPdG~-~LAsgSdd 212 (767)
....+.+|...|..++|++.+.++|++++.|+.+.|||+++ .++.+. ..|...|+|++|+|-+. .||+|+.|
T Consensus 215 ~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D 294 (422)
T KOG0264|consen 215 KVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSAD 294 (422)
T ss_pred ccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCC
Confidence 35678999999999999999999999999999999999995 333333 35899999999999765 78888855
Q ss_pred c-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe------eCCcCCCCc
Q 004217 213 K-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE------VNDLDSSES 264 (767)
Q Consensus 213 ~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs------vwdl~s~~~ 264 (767)
+ |++||+|+.+. +...+.+|...|..|.|||+...++++++ +||+.....
T Consensus 295 ~tV~LwDlRnL~~--~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~ 351 (422)
T KOG0264|consen 295 KTVALWDLRNLNK--PLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGE 351 (422)
T ss_pred CcEEEeechhccc--CceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEecccccc
Confidence 5 99999998776 56788999999999999999998888776 888875443
No 78
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.71 E-value=8.9e-16 Score=158.05 Aligned_cols=224 Identities=13% Similarity=0.067 Sum_probs=175.3
Q ss_pred eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEcc
Q 004217 72 QIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHG 147 (767)
Q Consensus 72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~g 147 (767)
...+....+|..|++++.|.+..+|-...+ ++.||++.|+|++.+-+.++|++|+.|.++++||+++|+++..++
T Consensus 13 lTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k- 91 (327)
T KOG0643|consen 13 LTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWK- 91 (327)
T ss_pred cceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEee-
Confidence 344556679999999999999999998665 688999999999999999999999999999999999999999987
Q ss_pred CCCCcEEEEEccCCCcEEEEEeC-----CCeEEEEECCC-------CeEEEe-ecCCCCeEEEEEcCCCCEEEEEECCc-
Q 004217 148 HRRTPWVVRFHPLNPTIIASGSL-----DHEVRLWNAST-------AECIGS-RDFYRPIASIAFHASGELLAVASGHK- 213 (767)
Q Consensus 148 H~~~V~sLafsP~dg~lLaSgS~-----DGtVrIWDl~t-------g~~i~~-l~h~~~VtsVafSPdG~~LAsgSdd~- 213 (767)
-...|..+.|++ ++++++.+.. .+.|.++|++. .++... ..+.+.++.+-|+|.+++|++|.+++
T Consensus 92 ~~~~Vk~~~F~~-~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~ 170 (327)
T KOG0643|consen 92 TNSPVKRVDFSF-GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGS 170 (327)
T ss_pred cCCeeEEEeecc-CCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCc
Confidence 467899999999 7777776654 46799999983 444444 44778999999999999999999766
Q ss_pred EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEeecCCCccCCCCeEEEecCC
Q 004217 214 LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYWRYPPPVICMAGAH 288 (767)
Q Consensus 214 V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s~~~~~~l~t~sG~~~~p~~~v~l~~~~ 288 (767)
|.+||++++.+.. .....|...|+.++|++|..++++++. +||+++.+...++.
T Consensus 171 is~~da~~g~~~v--~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~------------------- 229 (327)
T KOG0643|consen 171 ISIYDARTGKELV--DSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT------------------- 229 (327)
T ss_pred EEEEEcccCceee--echhhhccccccccccCCcceEEecccCccceeeeccceeeEEEee-------------------
Confidence 9999999987643 234568889999999999998887665 55655433222111
Q ss_pred CCCCCceeeccCCCCCCceeeEEecCCCEEEEeecCCCCCCcc
Q 004217 289 SSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATR 331 (767)
Q Consensus 289 Ssd~~~L~sg~~~~slpil~psFSpDg~rIva~~~~~d~Gs~~ 331 (767)
..-|+...+++|--..|+++..++.-.++.
T Consensus 230 -------------te~PvN~aaisP~~d~VilgGGqeA~dVTT 259 (327)
T KOG0643|consen 230 -------------TERPVNTAAISPLLDHVILGGGQEAMDVTT 259 (327)
T ss_pred -------------ecccccceecccccceEEecCCceeeeeee
Confidence 112444567777777888877666544443
No 79
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=1.6e-17 Score=187.95 Aligned_cols=192 Identities=19% Similarity=0.284 Sum_probs=164.5
Q ss_pred ecccccceecCCcceEEEEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEE
Q 004217 58 LLGETARKCSGSFSQIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKI 133 (767)
Q Consensus 58 ~wd~~~~~~~~s~s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrV 133 (767)
+|+.....+. .-..-+..+....+.+++|.+|.++.+|....- .|.+|...|.++.|+++..+|+.|+.||+||+
T Consensus 18 ~~~~~~~~~h-saav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~ 96 (825)
T KOG0267|consen 18 VWDTREFVAH-SAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKV 96 (825)
T ss_pred cccchhhhhh-hhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceee
Confidence 5665544443 111223334667889999999999999987643 47899999999999999999999999999999
Q ss_pred EECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec-CCCCeEEEEEcCCCCEEEEEECC
Q 004217 134 IDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGH 212 (767)
Q Consensus 134 WDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~-h~~~VtsVafSPdG~~LAsgSdd 212 (767)
||++.++.+++|.||...+..+.|+| -+.++++|+.|+.+++||++...|.+.++ |...|..+.|+|+|++++.+++|
T Consensus 97 wDleeAk~vrtLtgh~~~~~sv~f~P-~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed 175 (825)
T KOG0267|consen 97 WDLEEAKIVRTLTGHLLNITSVDFHP-YGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGED 175 (825)
T ss_pred eehhhhhhhhhhhccccCcceeeecc-ceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCc
Confidence 99999999999999999999999999 88999999999999999999888888876 78889999999999999999986
Q ss_pred c-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217 213 K-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (767)
Q Consensus 213 ~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs 255 (767)
. ++|||+..++... .+..|...+.++.|+|..- |+++++
T Consensus 176 ~tvki~d~~agk~~~---ef~~~e~~v~sle~hp~e~-Lla~Gs 215 (825)
T KOG0267|consen 176 NTVKIWDLTAGKLSK---EFKSHEGKVQSLEFHPLEV-LLAPGS 215 (825)
T ss_pred ceeeeeccccccccc---ccccccccccccccCchhh-hhccCC
Confidence 6 9999999998755 6778999999999999876 555554
No 80
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.71 E-value=1.8e-15 Score=158.02 Aligned_cols=220 Identities=15% Similarity=0.178 Sum_probs=158.5
Q ss_pred eEEEEEEc-CCCEEEEEeCCCeEEEEeCCCC-C-----CCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEE
Q 004217 72 QIFEAGRD-ARRGLASWVEAESLHHLRPKYC-P-----LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKV 144 (767)
Q Consensus 72 ~~~vA~sd-~g~~LaSgs~DgsIrlWd~~t~-~-----L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~ 144 (767)
...++++. ....++.++.|++||+|+++.. . ...|.++|.+++|+.||..+++|+.|+.+++||+.+++ +..
T Consensus 30 IS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q-~~~ 108 (347)
T KOG0647|consen 30 ISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ-VSQ 108 (347)
T ss_pred hheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC-eee
Confidence 44455655 5666668999999999999863 2 45799999999999999999999999999999999995 667
Q ss_pred EccCCCCcEEEEEccCCCc--EEEEEeCCCeEEEEECCCCeEEEeecCC-------------------------------
Q 004217 145 LHGHRRTPWVVRFHPLNPT--IIASGSLDHEVRLWNASTAECIGSRDFY------------------------------- 191 (767)
Q Consensus 145 L~gH~~~V~sLafsP~dg~--lLaSgS~DGtVrIWDl~tg~~i~~l~h~------------------------------- 191 (767)
+..|.++|..+.|-+ ... .|++||.|++|+.||.+...++..+...
T Consensus 109 v~~Hd~pvkt~~wv~-~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~ 187 (347)
T KOG0647|consen 109 VAAHDAPVKTCHWVP-GMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPP 187 (347)
T ss_pred eeecccceeEEEEec-CCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCc
Confidence 788999999999987 555 8999999999999999987664443221
Q ss_pred -----------CCeEEEEEcCCCCEEEEEE-CCcEEEEEcCCCccccCCeEEecCCC---------CeEEEEEccCCCeE
Q 004217 192 -----------RPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRR---------SLRAVHFHPHAAPL 250 (767)
Q Consensus 192 -----------~~VtsVafSPdG~~LAsgS-dd~V~VWDl~t~~~~~~~~~l~~h~~---------~VtsVaFSPDG~~L 250 (767)
-.+.||+...|....+.|+ ++++.|..++.+.. ..-+.+.-|+. .|++|+|+|.-..|
T Consensus 188 te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~-~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtl 266 (347)
T KOG0647|consen 188 TEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNP-KDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTL 266 (347)
T ss_pred chhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCc-cCceeEEEeccCCCCCCceEEecceEeecccceE
Confidence 1355777777777667777 56677777766533 22344555542 47889999988878
Q ss_pred EEEEeeCCcCCCCcceeEeecCCCccCCCCeEEEecCCCCCCCceeeccCCCCCCceeeEEecCCCEEEE
Q 004217 251 LLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISL 320 (767)
Q Consensus 251 laSgsvwdl~s~~~~~~l~t~sG~~~~p~~~v~l~~~~Ssd~~~L~sg~~~~slpil~psFSpDg~rIva 320 (767)
++.|++. .++||+.+... .| .......-|+-..+|..+|+..+.
T Consensus 267 vTaGsDG-----------------------tf~FWDkdar~--kL-k~s~~~~qpItcc~fn~~G~ifaY 310 (347)
T KOG0647|consen 267 VTAGSDG-----------------------TFSFWDKDART--KL-KTSETHPQPITCCSFNRNGSIFAY 310 (347)
T ss_pred EEecCCc-----------------------eEEEecchhhh--hh-hccCcCCCccceeEecCCCCEEEE
Confidence 8877632 34444422211 11 122233456667789999887654
No 81
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.71 E-value=2e-16 Score=176.48 Aligned_cols=254 Identities=15% Similarity=0.158 Sum_probs=177.5
Q ss_pred eCCCeEEEEeCCCC-CCC-------CCCCCeEEEEECC-CCCeEEEEeCCCeEEEEECCCC-------eEEEEEccCCCC
Q 004217 88 VEAESLHHLRPKYC-PLS-------PPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTG-------SCLKVLHGHRRT 151 (767)
Q Consensus 88 s~DgsIrlWd~~t~-~L~-------gH~~sVtsVaFSp-DG~~LASgs~DGtVrVWDl~tg-------~~l~~L~gH~~~ 151 (767)
+..|.|-++++... +|. -....|+++.|+| |...||.+++||.|+||.+..+ .....+++|...
T Consensus 600 g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eK 679 (1012)
T KOG1445|consen 600 GSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEK 679 (1012)
T ss_pred CCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccce
Confidence 45778888988653 322 2345699999999 9999999999999999998754 345678899999
Q ss_pred cEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEe-ecCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccCCe
Q 004217 152 PWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-RDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPR 229 (767)
Q Consensus 152 V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~-l~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~ 229 (767)
|+++.|||.-.+.|++++.|-+|++||+++++.... .+|.+.|..++|+|||+.+|+.+.|+ |+||+-+.++... .
T Consensus 680 I~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv--~ 757 (1012)
T KOG1445|consen 680 ITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPV--Y 757 (1012)
T ss_pred EEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCcc--c
Confidence 999999998899999999999999999999887666 46999999999999999999998555 9999998776422 1
Q ss_pred EEecC-CCCeEEEEEccCCCeEEEEEeeCCcCCCCcceeEeecCCCccCCCCeEEEecCCCCCCCceeeccCCCCCCcee
Q 004217 230 IVLRT-RRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLR 308 (767)
Q Consensus 230 ~l~~h-~~~VtsVaFSPDG~~LlaSgsvwdl~s~~~~~~l~t~sG~~~~p~~~v~l~~~~Ssd~~~L~sg~~~~slpil~ 308 (767)
.-.+. ...-..|.|--||++++++|-... ..+.+.+-+...-+...+.+...+..-..+.
T Consensus 758 Eg~gpvgtRgARi~wacdgr~viv~Gfdk~-------------------SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~Lv 818 (1012)
T KOG1445|consen 758 EGKGPVGTRGARILWACDGRIVIVVGFDKS-------------------SERQVQMYDAQTLDLRPLYTQVLDVAPSPLV 818 (1012)
T ss_pred cCCCCccCcceeEEEEecCcEEEEeccccc-------------------chhhhhhhhhhhccCCcceeeeecccCcccc
Confidence 11111 223346778889998877652110 1112222222222222233332222333334
Q ss_pred eEEecCCCEEEEeecCCCCCCcccccccccCCceeeeeccCCCCceeeeeccCCCCCCCCCCCCCCccccccccccCCcc
Q 004217 309 PSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQYELVLSPIASNRSSPMPDGTGTDSFVSEIDGALPQ 388 (767)
Q Consensus 309 psFSpDg~rIva~~~~~d~Gs~~~~~~~~ss~~~~l~~~~~~~~q~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (767)
|.|.+|.+.+.+ +|+++..+ .-|++..++||+-=++.|.+...-
T Consensus 819 P~YD~Ds~~lfl------------------------------tGKGD~~v------~~yEv~~esPy~lpl~~f~sp~~h 862 (1012)
T KOG1445|consen 819 PHYDYDSNVLFL------------------------------TGKGDRFV------NMYEVIYESPYLLPLAPFMSPVGH 862 (1012)
T ss_pred ccccCCCceEEE------------------------------ecCCCceE------EEEEecCCCceeeecccccCCCcc
Confidence 444444444433 34555555 667888899999888888888888
Q ss_pred cccccccccc
Q 004217 389 AAIGAVGTLD 398 (767)
Q Consensus 389 ~~~~~~~~~~ 398 (767)
.++-+....+
T Consensus 863 qGl~fl~K~~ 872 (1012)
T KOG1445|consen 863 QGLAFLQKLK 872 (1012)
T ss_pred cceeeecccc
Confidence 8888876666
No 82
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.71 E-value=7.4e-17 Score=164.61 Aligned_cols=197 Identities=17% Similarity=0.192 Sum_probs=166.7
Q ss_pred cceeecccccceecCCc----ceEEEEEEcCCCEEEEEeCCCeEEEEeCCCC-----CCCCCCCCeEEEEECCCCCeEEE
Q 004217 54 SSKRLLGETARKCSGSF----SQIFEAGRDARRGLASWVEAESLHHLRPKYC-----PLSPPPRSTIAAAFSPDGKTLAS 124 (767)
Q Consensus 54 ~sk~~wd~~~~~~~~s~----s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~-----~L~gH~~sVtsVaFSpDG~~LAS 124 (767)
...++|+........+| -+..++++.+...|++|+.++.+|++|++.. ++.+|++.|..+-|....+.|++
T Consensus 81 ftakvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLS 160 (334)
T KOG0278|consen 81 FTAKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILS 160 (334)
T ss_pred chhhhhhhhhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEe
Confidence 45667776543332232 2788899999999999999999999999875 47899999999999998889999
Q ss_pred EeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCC
Q 004217 125 THGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGE 204 (767)
Q Consensus 125 gs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~ 204 (767)
...|++||+||.++++.++.|. -...|+++..++ +++++.. ...+.|++||..+...++.++....|.+...+|+..
T Consensus 161 Sadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~-dG~ilTi-a~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~ 237 (334)
T KOG0278|consen 161 SADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQ-DGRILTI-AYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKE 237 (334)
T ss_pred eccCCceEEEEeccCcEEEEEe-cCCCCcceeecc-CCCEEEE-ecCceeEEeccccccceeeccCccccccccccCCCc
Confidence 9999999999999999999886 567899999999 7775554 567889999999999999999999999999999998
Q ss_pred EEEEEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217 205 LLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (767)
Q Consensus 205 ~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs 255 (767)
++++|+.+. ++.||+.+++++.. ...+|.++|.+|.|+|||...++.++
T Consensus 238 ~fVaGged~~~~kfDy~TgeEi~~--~nkgh~gpVhcVrFSPdGE~yAsGSE 287 (334)
T KOG0278|consen 238 FFVAGGEDFKVYKFDYNTGEEIGS--YNKGHFGPVHCVRFSPDGELYASGSE 287 (334)
T ss_pred eEEecCcceEEEEEeccCCceeee--cccCCCCceEEEEECCCCceeeccCC
Confidence 888888776 99999999998661 24789999999999999995554444
No 83
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.70 E-value=5.1e-16 Score=167.05 Aligned_cols=188 Identities=14% Similarity=0.176 Sum_probs=155.9
Q ss_pred ceEEEEEEcCCCEEEEEeCCCeEEEEeCCCC-------CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEE
Q 004217 71 SQIFEAGRDARRGLASWVEAESLHHLRPKYC-------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLK 143 (767)
Q Consensus 71 s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~-------~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~ 143 (767)
.+-++.++.+|++|++++.|.+..+|++... ++.+|..+|..+.||||.++|++|+.|..+++||+.+|.+.+
T Consensus 226 EVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~ 305 (519)
T KOG0293|consen 226 EVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRH 305 (519)
T ss_pred cEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhh
Confidence 4677889999999999999999999988653 577999999999999999999999999999999999999887
Q ss_pred EEc-cCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec-CCCCeEEEEEcCCCCEEEEEECCc-EEEEEcC
Q 004217 144 VLH-GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGHK-LYIWRYN 220 (767)
Q Consensus 144 ~L~-gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~-h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~ 220 (767)
.+. +|...+.+++|.| |+..+++|+.|+++..||+.....-.--+ ....|.+++..+||+++++...|. |++++..
T Consensus 306 ~y~~~~~~S~~sc~W~p-Dg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e 384 (519)
T KOG0293|consen 306 LYPSGLGFSVSSCAWCP-DGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNRE 384 (519)
T ss_pred hcccCcCCCcceeEEcc-CCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechh
Confidence 774 4567899999999 99999999999999999997544222211 335689999999999877776554 9999988
Q ss_pred CCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCC
Q 004217 221 MREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSE 263 (767)
Q Consensus 221 t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s~~ 263 (767)
+..... +.....+|++++.|.|++++++.-. .||+..+.
T Consensus 385 ~~~dr~----lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~ 428 (519)
T KOG0293|consen 385 ARVDRG----LISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENK 428 (519)
T ss_pred hhhhhc----cccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhh
Confidence 765533 3445678999999999998887544 88887433
No 84
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.70 E-value=7.5e-16 Score=166.72 Aligned_cols=180 Identities=18% Similarity=0.283 Sum_probs=154.4
Q ss_pred EEEEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccC
Q 004217 73 IFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGH 148 (767)
Q Consensus 73 ~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH 148 (767)
..+....+...+++++.|..|++|..... ....|..+|+.+..+|.|.||++++.|++.-+.|++++.++......
T Consensus 265 ~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~ 344 (506)
T KOG0289|consen 265 TSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDE 344 (506)
T ss_pred EEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeec
Confidence 33445667788899999999999998764 35689999999999999999999999999999999999987665432
Q ss_pred C--CCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec-CCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCcc
Q 004217 149 R--RTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGHK-LYIWRYNMREE 224 (767)
Q Consensus 149 ~--~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~-h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~ 224 (767)
+ -.+++.+||| |+.+|.+|..|+.|+|||+.++..+..|. |.++|..++|+.+|.||+++.+|+ |++||+|..+.
T Consensus 345 ~s~v~~ts~~fHp-DgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n 423 (506)
T KOG0289|consen 345 TSDVEYTSAAFHP-DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKN 423 (506)
T ss_pred cccceeEEeeEcC-CceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcc
Confidence 2 3478999999 99999999999999999999998888775 999999999999999999999888 99999998875
Q ss_pred ccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217 225 TSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (767)
Q Consensus 225 ~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs 255 (767)
.. .........|.++.|.+.|.+|+++++
T Consensus 424 ~k--t~~l~~~~~v~s~~fD~SGt~L~~~g~ 452 (506)
T KOG0289|consen 424 FK--TIQLDEKKEVNSLSFDQSGTYLGIAGS 452 (506)
T ss_pred cc--eeeccccccceeEEEcCCCCeEEeecc
Confidence 44 233334457999999999999988876
No 85
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.70 E-value=7.1e-17 Score=181.22 Aligned_cols=189 Identities=19% Similarity=0.264 Sum_probs=163.0
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCC----------CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCC--eEEEEEc
Q 004217 79 DARRGLASWVEAESLHHLRPKYC----------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTG--SCLKVLH 146 (767)
Q Consensus 79 d~g~~LaSgs~DgsIrlWd~~t~----------~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg--~~l~~L~ 146 (767)
.++++|++++.|+.|++|+.... .+..|.+-|+++...-+++.|++++.|-+|++|+...+ -++.++.
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir 114 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIR 114 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhh
Confidence 46678999999999999998653 35679999999999999999999999999999999877 5788899
Q ss_pred cCCCCcEEEEE-ccCCCcEEEEEeCCCeEEEEECCCCe--EEEee----------cCCCCeEEEEEcCCCCEEEEEECCc
Q 004217 147 GHRRTPWVVRF-HPLNPTIIASGSLDHEVRLWNASTAE--CIGSR----------DFYRPIASIAFHASGELLAVASGHK 213 (767)
Q Consensus 147 gH~~~V~sLaf-sP~dg~lLaSgS~DGtVrIWDl~tg~--~i~~l----------~h~~~VtsVafSPdG~~LAsgSdd~ 213 (767)
.|++.|.|+++ .+ +..+++||+.|+.|.+||+.++. .+..+ ++...|++++..+.|..|+.|+-.+
T Consensus 115 ~H~DYVkcla~~ak-~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek 193 (735)
T KOG0308|consen 115 THKDYVKCLAYIAK-NNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEK 193 (735)
T ss_pred cccchheeeeeccc-CceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCccc
Confidence 99999999999 66 88999999999999999999873 22221 4677899999999998888888655
Q ss_pred -EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEeec
Q 004217 214 -LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATS 271 (767)
Q Consensus 214 -V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s~~~~~~l~t~ 271 (767)
|++||.++.+.+. .+.+|...|+.+..++||..++++++ +||+....+..++..+
T Consensus 194 ~lr~wDprt~~kim---kLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH 254 (735)
T KOG0308|consen 194 DLRLWDPRTCKKIM---KLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVH 254 (735)
T ss_pred ceEEecccccccee---eeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEec
Confidence 9999999998766 77799999999999999999998776 8888877776665543
No 86
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.70 E-value=1.2e-16 Score=166.97 Aligned_cols=166 Identities=28% Similarity=0.392 Sum_probs=137.8
Q ss_pred CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCC------------C------eEEEEEccCCCCcEEEEEccCCCc
Q 004217 102 PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT------------G------SCLKVLHGHRRTPWVVRFHPLNPT 163 (767)
Q Consensus 102 ~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~t------------g------~~l~~L~gH~~~V~sLafsP~dg~ 163 (767)
-+..|+..+.+.+||+||.++|+|+.|..|+|.|++. | -.+++|-.|.+.|+++.||| ...
T Consensus 107 ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP-re~ 185 (430)
T KOG0640|consen 107 YLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP-RET 185 (430)
T ss_pred EEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc-hhh
Confidence 3668999999999999999999999999999999861 1 25678889999999999999 899
Q ss_pred EEEEEeCCCeEEEEECCCCeEE---EeecCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccCCeEEecCCCCeE
Q 004217 164 IIASGSLDHEVRLWNASTAECI---GSRDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLR 239 (767)
Q Consensus 164 lLaSgS~DGtVrIWDl~tg~~i---~~l~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~Vt 239 (767)
+|++|+.|++|++||+.+.... +.+....+|.++.|+|.|.+|++|.+.- +++||+++.+.........+|.+.|+
T Consensus 186 ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~ 265 (430)
T KOG0640|consen 186 ILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAIT 265 (430)
T ss_pred eEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCccccccccee
Confidence 9999999999999999865433 3355678999999999999999999866 99999999887554445667999999
Q ss_pred EEEEccCCCeEEEEEe-----eCCcCCCCcceeE
Q 004217 240 AVHFHPHAAPLLLTAE-----VNDLDSSESSLTL 268 (767)
Q Consensus 240 sVaFSPDG~~LlaSgs-----vwdl~s~~~~~~l 268 (767)
+|.+++.|+..++++. +||=.+..+..++
T Consensus 266 ~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~ 299 (430)
T KOG0640|consen 266 QVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTI 299 (430)
T ss_pred EEEecCCccEEEEeccCCcEEeeccccHHHHHHH
Confidence 9999999996666665 5554444444333
No 87
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.69 E-value=6e-17 Score=165.23 Aligned_cols=230 Identities=19% Similarity=0.199 Sum_probs=182.6
Q ss_pred EEcCCCEEEEEeCCCeEEEEeCCCCC-C--CCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCe-EEEEEccCCCCc
Q 004217 77 GRDARRGLASWVEAESLHHLRPKYCP-L--SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS-CLKVLHGHRRTP 152 (767)
Q Consensus 77 ~sd~g~~LaSgs~DgsIrlWd~~t~~-L--~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~-~l~~L~gH~~~V 152 (767)
...+-.+.++++.|-+-++||.-++. | -.|+.-|.+++|+.|.++|++|+.+..+||||++..+ +...+.+|++.|
T Consensus 67 l~~na~~aasaaadftakvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~I 146 (334)
T KOG0278|consen 67 LNKNATRAASAAADFTAKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGI 146 (334)
T ss_pred cCchhhhhhhhcccchhhhhhhhhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcc
Confidence 34456677888999999999998873 2 3788999999999999999999999999999998754 567889999999
Q ss_pred EEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEECCcEEEEEcCCCccccCCeEEe
Q 004217 153 WVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVL 232 (767)
Q Consensus 153 ~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSdd~V~VWDl~t~~~~~~~~~l~ 232 (767)
..+-|.. ..+.|+|...|++||+||.++++.++.+..+.+|+++..+++|++|.++....|.+||.++.+.++ ..
T Consensus 147 r~v~wc~-eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lK----s~ 221 (334)
T KOG0278|consen 147 RTVLWCH-EDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLK----SY 221 (334)
T ss_pred eeEEEec-cCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEecCceeEEecccccccee----ec
Confidence 9999998 788899999999999999999999999999999999999999999999988889999999887655 33
Q ss_pred cCCCCeEEEEEccCCCeEEEEEeeC-----CcCCCCcceeEeecCCCccCCCCeEEEecCCCCCCCceeeccCCCCCCce
Q 004217 233 RTRRSLRAVHFHPHAAPLLLTAEVN-----DLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFL 307 (767)
Q Consensus 233 ~h~~~VtsVaFSPDG~~LlaSgsvw-----dl~s~~~~~~l~t~sG~~~~p~~~v~l~~~~Ssd~~~L~sg~~~~slpil 307 (767)
.-...|.+...+|+...+++.+++. |..+++. +... ......|+.
T Consensus 222 k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeE----------------------------i~~~--nkgh~gpVh 271 (334)
T KOG0278|consen 222 KMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEE----------------------------IGSY--NKGHFGPVH 271 (334)
T ss_pred cCccccccccccCCCceEEecCcceEEEEEeccCCce----------------------------eeec--ccCCCCceE
Confidence 4466799999999998777666522 2222221 1111 122455777
Q ss_pred eeEEecCCCEEEEeecCCCCCCcccccccccCCceeeeeccCCCCceeeee
Q 004217 308 RPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQYELVL 358 (767)
Q Consensus 308 ~psFSpDg~rIva~~~~~d~Gs~~~~~~~~ss~~~~l~~~~~~~~q~~~~~ 358 (767)
.+.|+|||..-.. +|-...+..|...-+|.+..+
T Consensus 272 cVrFSPdGE~yAs-----------------GSEDGTirlWQt~~~~~~~~~ 305 (334)
T KOG0278|consen 272 CVRFSPDGELYAS-----------------GSEDGTIRLWQTTPGKTYGLW 305 (334)
T ss_pred EEEECCCCceeec-----------------cCCCceEEEEEecCCCchhhc
Confidence 8899999976664 233445778887777766433
No 88
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.69 E-value=2.4e-17 Score=172.59 Aligned_cols=163 Identities=19% Similarity=0.260 Sum_probs=144.8
Q ss_pred CCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEE--------ccCCCCcEEEEEccCCCcEEEEEeCCCeEEE
Q 004217 105 PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL--------HGHRRTPWVVRFHPLNPTIIASGSLDHEVRL 176 (767)
Q Consensus 105 gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L--------~gH~~~V~sLafsP~dg~lLaSgS~DGtVrI 176 (767)
+.+.-+.|..|||||++|++|+.||.|.|||..+|+..+.+ --+.+.|.|+.|+. |...+++|+.||.|++
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSR-DsEMlAsGsqDGkIKv 289 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSR-DSEMLASGSQDGKIKV 289 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecc-cHHHhhccCcCCcEEE
Confidence 45667899999999999999999999999999999865443 35778999999999 9999999999999999
Q ss_pred EECCCCeEEEeec--CCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEE
Q 004217 177 WNASTAECIGSRD--FYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLT 253 (767)
Q Consensus 177 WDl~tg~~i~~l~--h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaS 253 (767)
|.+++|.|++.+. |...|+++.|+.|+..+.+++.|. +++.-++.++.+. .+.+|.+.|+...|.+||.+++++
T Consensus 290 Wri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LK---EfrGHsSyvn~a~ft~dG~~iisa 366 (508)
T KOG0275|consen 290 WRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLK---EFRGHSSYVNEATFTDDGHHIISA 366 (508)
T ss_pred EEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHH---HhcCccccccceEEcCCCCeEEEe
Confidence 9999999999975 899999999999999999998665 9999999999876 788999999999999999999887
Q ss_pred Ee-----eCCcCCCCcceeEeec
Q 004217 254 AE-----VNDLDSSESSLTLATS 271 (767)
Q Consensus 254 gs-----vwdl~s~~~~~~l~t~ 271 (767)
++ +|+..+.++..++...
T Consensus 367 SsDgtvkvW~~KtteC~~Tfk~~ 389 (508)
T KOG0275|consen 367 SSDGTVKVWHGKTTECLSTFKPL 389 (508)
T ss_pred cCCccEEEecCcchhhhhhccCC
Confidence 65 8998888887665543
No 89
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=2.6e-16 Score=161.03 Aligned_cols=175 Identities=18% Similarity=0.228 Sum_probs=144.7
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECC-CCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcE
Q 004217 79 DARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPW 153 (767)
Q Consensus 79 d~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSp-DG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~ 153 (767)
..+..+++.+.|++||+|+.... ++.+|...|...+||| .++++++++.|+++++||++.......+..|...|.
T Consensus 115 ~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil 194 (311)
T KOG0277|consen 115 VRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEIL 194 (311)
T ss_pred ccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeE
Confidence 34566777799999999999765 5889999999999999 889999999999999999986433344889999999
Q ss_pred EEEEccCCCcEEEEEeCCCeEEEEECCCCe-EEEe-ecCCCCeEEEEEcCCCC-EEEEEECCc-EEEEEcCCCccccCCe
Q 004217 154 VVRFHPLNPTIIASGSLDHEVRLWNASTAE-CIGS-RDFYRPIASIAFHASGE-LLAVASGHK-LYIWRYNMREETSSPR 229 (767)
Q Consensus 154 sLafsP~dg~lLaSgS~DGtVrIWDl~tg~-~i~~-l~h~~~VtsVafSPdG~-~LAsgSdd~-V~VWDl~t~~~~~~~~ 229 (767)
++.|+..+.+.+++|+.|+.|++||+++-+ ++.+ .+|.-.|..++|||... +||+++.|- ++|||........ .
T Consensus 195 ~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~--e 272 (311)
T KOG0277|consen 195 CCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAI--E 272 (311)
T ss_pred eecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhh--h
Confidence 999998899999999999999999999743 4444 45888999999999874 888888776 9999988655422 3
Q ss_pred EEecCCCCeEEEEEccCCCeEEEEEe
Q 004217 230 IVLRTRRSLRAVHFHPHAAPLLLTAE 255 (767)
Q Consensus 230 ~l~~h~~~VtsVaFSPDG~~LlaSgs 255 (767)
....|..-|..+.||+.....+++++
T Consensus 273 ~~~~HtEFv~g~Dws~~~~~~vAs~g 298 (311)
T KOG0277|consen 273 TVDHHTEFVCGLDWSLFDPGQVASTG 298 (311)
T ss_pred hhhccceEEeccccccccCceeeecc
Confidence 55678899999999987555555543
No 90
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.68 E-value=1.7e-15 Score=178.49 Aligned_cols=174 Identities=21% Similarity=0.184 Sum_probs=151.4
Q ss_pred CCcceEEEEEEcCCCEEEEEeCCCeEEEEeCCC------C----------------CCCCCCCCeEEEEECCCCCeEEEE
Q 004217 68 GSFSQIFEAGRDARRGLASWVEAESLHHLRPKY------C----------------PLSPPPRSTIAAAFSPDGKTLAST 125 (767)
Q Consensus 68 ~s~s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t------~----------------~L~gH~~sVtsVaFSpDG~~LASg 125 (767)
.+....|+.++.+|.+|++|++|+.|.+|.... . .+.+|...|.+++|+||+.+|+++
T Consensus 68 h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~ 147 (942)
T KOG0973|consen 68 HDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSV 147 (942)
T ss_pred ccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEe
Confidence 344578888999999999999999999999872 0 366999999999999999999999
Q ss_pred eCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec-------CCCCeEEEE
Q 004217 126 HGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-------FYRPIASIA 198 (767)
Q Consensus 126 s~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~-------h~~~VtsVa 198 (767)
+.|++|.|||..+.+.+..+++|...|..+.|.| -+++|++-+.|++|++|++.+..+.+.+. ....+..+.
T Consensus 148 s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP-~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlS 226 (942)
T KOG0973|consen 148 SLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDP-IGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLS 226 (942)
T ss_pred cccceEEEEccccceeeeeeecccccccceEECC-ccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecc
Confidence 9999999999999999999999999999999999 99999999999999999988877766643 234678899
Q ss_pred EcCCCCEEEEEEC--C-c--EEEEEcCCCccccCCeEEecCCCCeEEEEEcc
Q 004217 199 FHASGELLAVASG--H-K--LYIWRYNMREETSSPRIVLRTRRSLRAVHFHP 245 (767)
Q Consensus 199 fSPdG~~LAsgSd--d-~--V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSP 245 (767)
|+|||++|++... + + +.|.+-.+-+.. ..+.+|..++.++.|+|
T Consensus 227 WSPDG~~las~nA~n~~~~~~~IieR~tWk~~---~~LvGH~~p~evvrFnP 275 (942)
T KOG0973|consen 227 WSPDGHHLASPNAVNGGKSTIAIIERGTWKVD---KDLVGHSAPVEVVRFNP 275 (942)
T ss_pred cCCCcCeecchhhccCCcceeEEEecCCceee---eeeecCCCceEEEEeCh
Confidence 9999999999862 2 2 888887665533 37889999999999998
No 91
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.68 E-value=8.9e-16 Score=155.75 Aligned_cols=149 Identities=16% Similarity=0.273 Sum_probs=131.0
Q ss_pred CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCC
Q 004217 102 PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST 181 (767)
Q Consensus 102 ~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~t 181 (767)
.+..|.++|.++.|+-||++.++|+.|.+||+|+...|.+++++.+|...|..++.+. |+..|++|+.|..|.+||+.+
T Consensus 12 ~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~-Dnskf~s~GgDk~v~vwDV~T 90 (307)
T KOG0316|consen 12 ILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSS-DNSKFASCGGDKAVQVWDVNT 90 (307)
T ss_pred eecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccc-cccccccCCCCceEEEEEccc
Confidence 3568999999999999999999999999999999999999999999999999999998 888999999999999999999
Q ss_pred CeEEEeec-CCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217 182 AECIGSRD-FYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (767)
Q Consensus 182 g~~i~~l~-h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs 255 (767)
|+.++.+. |...|+.+.|+.+...+++|+-|. +++||.+..... +.+.+....+.|.+|..+.. .+.+++
T Consensus 91 Gkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~e-PiQildea~D~V~Si~v~~h---eIvaGS 162 (307)
T KOG0316|consen 91 GKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFE-PIQILDEAKDGVSSIDVAEH---EIVAGS 162 (307)
T ss_pred CeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCC-ccchhhhhcCceeEEEeccc---EEEeec
Confidence 99999875 999999999999999999999665 999999876542 24466667889999988633 444444
No 92
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.68 E-value=6.4e-15 Score=151.82 Aligned_cols=153 Identities=16% Similarity=0.302 Sum_probs=137.0
Q ss_pred CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCC
Q 004217 102 PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST 181 (767)
Q Consensus 102 ~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~t 181 (767)
.|+||.++++-+.|+.+|.+|++|+.|.++.||-..+|+.+.++.||++.|+++..+- +.+.+++|+.|.++++||+.+
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~-~s~~liTGSAD~t~kLWDv~t 83 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDW-DSKHLITGSADQTAKLWDVET 83 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecC-CcceeeeccccceeEEEEcCC
Confidence 3679999999999999999999999999999999989999999999999999999988 889999999999999999999
Q ss_pred CeEEEeecCCCCeEEEEEcCCCCEEEEEECCc------EEEEEcCCCc----cccCCeEEecCCCCeEEEEEccCCCeEE
Q 004217 182 AECIGSRDFYRPIASIAFHASGELLAVASGHK------LYIWRYNMRE----ETSSPRIVLRTRRSLRAVHFHPHAAPLL 251 (767)
Q Consensus 182 g~~i~~l~h~~~VtsVafSPdG~~LAsgSdd~------V~VWDl~t~~----~~~~~~~l~~h~~~VtsVaFSPDG~~Ll 251 (767)
|+++..++...+|..+.|+++|++++...++. |.++|++... ...+...+..+.+.++.+-|+|-+++|+
T Consensus 84 Gk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii 163 (327)
T KOG0643|consen 84 GKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETII 163 (327)
T ss_pred CcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEE
Confidence 99999999999999999999999988887642 9999998443 1112345666789999999999999888
Q ss_pred EEEe
Q 004217 252 LTAE 255 (767)
Q Consensus 252 aSgs 255 (767)
+..+
T Consensus 164 ~Ghe 167 (327)
T KOG0643|consen 164 AGHE 167 (327)
T ss_pred EecC
Confidence 8765
No 93
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.67 E-value=1.6e-15 Score=175.02 Aligned_cols=189 Identities=20% Similarity=0.242 Sum_probs=160.8
Q ss_pred eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEcc
Q 004217 72 QIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHG 147 (767)
Q Consensus 72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~g 147 (767)
...++....+..|++|+.|.++++||..++ .+.+|...|.++..- ..++++|+.|.+|++|++.++.++..+.+
T Consensus 252 V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~ 329 (537)
T KOG0274|consen 252 VWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRG 329 (537)
T ss_pred ceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEecc
Confidence 566667678999999999999999999887 488999999999886 46788899999999999999999999999
Q ss_pred CCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec-CCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCC-cc
Q 004217 148 HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGHK-LYIWRYNMR-EE 224 (767)
Q Consensus 148 H~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~-h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~-~~ 224 (767)
|.+.|.++..+ +.++++|+.|++|++||+.++++++.+. |...|.++.+... ..+++|+-|+ |++||+++. +.
T Consensus 330 h~~~V~~v~~~---~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c 405 (537)
T KOG0274|consen 330 HTGPVNCVQLD---EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKC 405 (537)
T ss_pred ccccEEEEEec---CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhh
Confidence 99999999994 6999999999999999999999999964 9999999988776 7888998556 999999999 65
Q ss_pred ccCCeEEecCCCCeEEEEEccCCCeEEEEE-----eeCCcCCCCcceeEeec
Q 004217 225 TSSPRIVLRTRRSLRAVHFHPHAAPLLLTA-----EVNDLDSSESSLTLATS 271 (767)
Q Consensus 225 ~~~~~~l~~h~~~VtsVaFSPDG~~LlaSg-----svwdl~s~~~~~~l~t~ 271 (767)
+. .+.+|..-|..+.+ .+++|+.+. .+||....++...+.+.
T Consensus 406 ~~---tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~ 452 (537)
T KOG0274|consen 406 IH---TLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGR 452 (537)
T ss_pred hh---hhcCCccccccccc--ccceeEeccccccEEEeecccCceeeeeccC
Confidence 54 77888888876665 355454433 28888888877776653
No 94
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.67 E-value=6.1e-17 Score=183.36 Aligned_cols=181 Identities=22% Similarity=0.282 Sum_probs=161.2
Q ss_pred cceEEEEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEE
Q 004217 70 FSQIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL 145 (767)
Q Consensus 70 ~s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L 145 (767)
....++.+......|+.|+.+|+|++||++.. .|.+|...+..+.|+|-+.+.++|+.|+.+++||.+...|.+.+
T Consensus 71 spIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~ 150 (825)
T KOG0267|consen 71 SPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTY 150 (825)
T ss_pred CcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeee
Confidence 33566677777888999999999999999876 48899999999999999999999999999999999988899999
Q ss_pred ccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec-CCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCc
Q 004217 146 HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGHK-LYIWRYNMRE 223 (767)
Q Consensus 146 ~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~-h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~ 223 (767)
++|...|..++|+| ++.++++++.|.+++|||...|+.+..|. |...+.++.|+|..-+++.|+.|+ |++||+++.+
T Consensus 151 ~s~~~vv~~l~lsP-~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe 229 (825)
T KOG0267|consen 151 KSHTRVVDVLRLSP-DGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFE 229 (825)
T ss_pred cCCcceeEEEeecC-CCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeE
Confidence 99999999999999 99999999999999999999999999987 999999999999999999999776 9999999877
Q ss_pred cccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 004217 224 ETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA 254 (767)
Q Consensus 224 ~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSg 254 (767)
.+. ........|.++.|+|++..++...
T Consensus 230 ~I~---s~~~~~~~v~~~~fn~~~~~~~~G~ 257 (825)
T KOG0267|consen 230 VIS---SGKPETDGVRSLAFNPDGKIVLSGE 257 (825)
T ss_pred Eee---ccCCccCCceeeeecCCceeeecCc
Confidence 654 2333467899999999999555443
No 95
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=1.2e-14 Score=146.66 Aligned_cols=179 Identities=24% Similarity=0.345 Sum_probs=152.4
Q ss_pred ceEEEEEEcCCCEEEEEeCCCeEEEEeCC--CC-------CCCCCCCCeEEEEECC----CCCeEEEEeC-CCeEEEEEC
Q 004217 71 SQIFEAGRDARRGLASWVEAESLHHLRPK--YC-------PLSPPPRSTIAAAFSP----DGKTLASTHG-DHTVKIIDC 136 (767)
Q Consensus 71 s~~~vA~sd~g~~LaSgs~DgsIrlWd~~--t~-------~L~gH~~sVtsVaFSp----DG~~LASgs~-DGtVrVWDl 136 (767)
+..+.+++..|..|++|++|++|++...+ ++ ++.-|.+.|.+++|-. .|.+|++++. |..|++-|.
T Consensus 91 siyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc 170 (350)
T KOG0641|consen 91 SIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDC 170 (350)
T ss_pred cEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeec
Confidence 47788999999999999999999987654 33 3556889999999965 3557777654 788888899
Q ss_pred CCCeEEEEEccCCCCcEEE-EEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec--------CCCCeEEEEEcCCCCEEE
Q 004217 137 QTGSCLKVLHGHRRTPWVV-RFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD--------FYRPIASIAFHASGELLA 207 (767)
Q Consensus 137 ~tg~~l~~L~gH~~~V~sL-afsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~--------h~~~VtsVafSPdG~~LA 207 (767)
.+|+..+.+.||++-|.++ .| ++-.|++|+.|.+|++||++-..++..+. ..+.|.+++.+|.|++|+
T Consensus 171 ~~g~~~~a~sghtghilalysw---n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~ 247 (350)
T KOG0641|consen 171 GRGQGFHALSGHTGHILALYSW---NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLA 247 (350)
T ss_pred CCCCcceeecCCcccEEEEEEe---cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceee
Confidence 9999999999999999876 34 67999999999999999999999988864 125799999999999999
Q ss_pred EEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217 208 VASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (767)
Q Consensus 208 sgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs 255 (767)
+|-.|. ..+||++.+..++ .+..|...|++|.|+|.-.|+++.+-
T Consensus 248 sg~~dssc~lydirg~r~iq---~f~phsadir~vrfsp~a~yllt~sy 293 (350)
T KOG0641|consen 248 SGHADSSCMLYDIRGGRMIQ---RFHPHSADIRCVRFSPGAHYLLTCSY 293 (350)
T ss_pred eccCCCceEEEEeeCCceee---eeCCCccceeEEEeCCCceEEEEecc
Confidence 999776 9999999998766 78899999999999999887776653
No 96
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=1.3e-15 Score=166.30 Aligned_cols=202 Identities=16% Similarity=0.140 Sum_probs=167.3
Q ss_pred eEEEEEEcCCCEEEEEeCCCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECC---------C
Q 004217 72 QIFEAGRDARRGLASWVEAESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQ---------T 138 (767)
Q Consensus 72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~----L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~---------t 138 (767)
..+++..+.|.+|+.+...+.|.+|.+.++. +.+|-..|+|+.|+-||.+|++|+.||.|.+|++. +
T Consensus 84 v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~ 163 (476)
T KOG0646|consen 84 VHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHS 163 (476)
T ss_pred eeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCC
Confidence 5667778899999999999999999999995 56999999999999999999999999999999873 2
Q ss_pred CeEEEEEccCCCCcEEEEEccC-CCcEEEEEeCCCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEECCc-EEE
Q 004217 139 GSCLKVLHGHRRTPWVVRFHPL-NPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHK-LYI 216 (767)
Q Consensus 139 g~~l~~L~gH~~~V~sLafsP~-dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSdd~-V~V 216 (767)
-++++.|..|+-.|+.+...+. -...++|+|.|.++++||+..+..+.++.....+.+++.+|-++.+++|+.++ |.+
T Consensus 164 ~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~ 243 (476)
T KOG0646|consen 164 VKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQ 243 (476)
T ss_pred ccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcceEEe
Confidence 3578899999999999998772 24589999999999999999999999999999999999999999999998655 877
Q ss_pred EEcCCCcc-------------ccCCeEEecCCC--CeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEeecCC
Q 004217 217 WRYNMREE-------------TSSPRIVLRTRR--SLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPG 273 (767)
Q Consensus 217 WDl~t~~~-------------~~~~~~l~~h~~--~VtsVaFSPDG~~LlaSgs-----vwdl~s~~~~~~l~t~sG 273 (767)
.++.+... ......+.+|.+ .|++++.+-||..|+++.. +||+.+-.+...+.+..|
T Consensus 244 ~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kg 320 (476)
T KOG0646|consen 244 NLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKG 320 (476)
T ss_pred eehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhcc
Confidence 77654331 112335667877 9999999999995555443 888887666665554444
No 97
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.67 E-value=3.9e-15 Score=162.28 Aligned_cols=193 Identities=19% Similarity=0.230 Sum_probs=162.5
Q ss_pred cceEEEEEEcCCCEEEEEeCCCeEEEEeCCCCC--------------------C--CCCCCCeEEEEECCCCCeEEEEeC
Q 004217 70 FSQIFEAGRDARRGLASWVEAESLHHLRPKYCP--------------------L--SPPPRSTIAAAFSPDGKTLASTHG 127 (767)
Q Consensus 70 ~s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~--------------------L--~gH~~sVtsVaFSpDG~~LASgs~ 127 (767)
.+.++++.+++..++++++.+++|..|+..+++ . .+|...+.+++.|+||++||+|+.
T Consensus 143 ~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~ 222 (479)
T KOG0299|consen 143 LSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGR 222 (479)
T ss_pred CcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecCC
Confidence 347788999999999999999999999987642 1 268888999999999999999999
Q ss_pred CCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEe-ecCCCCeEEEEEcCCCCEE
Q 004217 128 DHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-RDFYRPIASIAFHASGELL 206 (767)
Q Consensus 128 DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~-l~h~~~VtsVafSPdG~~L 206 (767)
|..|.|||.++.+.++.|++|.+.|.+++|-- +.+.+++++.|.+|++|++.....+.+ ++|++.|..|.-...++.+
T Consensus 223 d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~-gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~v 301 (479)
T KOG0299|consen 223 DRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRK-GTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCV 301 (479)
T ss_pred CceEEEecCcccchhhcccccccceeeeeeec-CccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhcccceE
Confidence 99999999999999999999999999999988 888999999999999999998776666 6899999999988888888
Q ss_pred EEEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeE
Q 004217 207 AVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTL 268 (767)
Q Consensus 207 AsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s~~~~~~l 268 (767)
.+|+.|+ +++|++....+ ..+.+|.+.+-+++|-.+.. +++++. .|.+..-......
T Consensus 302 tVGgrDrT~rlwKi~eesq----lifrg~~~sidcv~~In~~H-fvsGSdnG~IaLWs~~KKkplf~~ 364 (479)
T KOG0299|consen 302 TVGGRDRTVRLWKIPEESQ----LIFRGGEGSIDCVAFINDEH-FVSGSDNGSIALWSLLKKKPLFTS 364 (479)
T ss_pred EeccccceeEEEeccccce----eeeeCCCCCeeeEEEecccc-eeeccCCceEEEeeecccCceeEe
Confidence 8887555 99999954433 35778889999999997766 555544 6766544444333
No 98
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.67 E-value=9.1e-15 Score=155.84 Aligned_cols=164 Identities=18% Similarity=0.291 Sum_probs=146.9
Q ss_pred CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCC
Q 004217 102 PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST 181 (767)
Q Consensus 102 ~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~t 181 (767)
.+..|+.+|.+++.+|+.+++++|+.|....||++.+|.....+.+|++.|+++.|+. ++.+|++|..+|.|+||+..+
T Consensus 59 tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fsh-dgtlLATGdmsG~v~v~~~st 137 (399)
T KOG0296|consen 59 TFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSH-DGTLLATGDMSGKVLVFKVST 137 (399)
T ss_pred ehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEcc-CceEEEecCCCccEEEEEccc
Confidence 5778999999999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred CeEEEeec-CCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe----
Q 004217 182 AECIGSRD-FYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE---- 255 (767)
Q Consensus 182 g~~i~~l~-h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs---- 255 (767)
+.....+. .-..+.=+.|||.+.+|+.|+.|+ +.+|.+.++... +.+.+|..++++=.|.|||+++++.-.
T Consensus 138 g~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~---kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti 214 (399)
T KOG0296|consen 138 GGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALC---KVMSGHNSPCTCGEFIPDGKRILTGYDDGTI 214 (399)
T ss_pred CceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCccee---eEecCCCCCcccccccCCCceEEEEecCceE
Confidence 99888865 556788899999999999999776 999999987543 478999999999999999998877543
Q ss_pred -eCCcCCCCcceeEe
Q 004217 256 -VNDLDSSESSLTLA 269 (767)
Q Consensus 256 -vwdl~s~~~~~~l~ 269 (767)
+|+..++.....+.
T Consensus 215 ~~Wn~ktg~p~~~~~ 229 (399)
T KOG0296|consen 215 IVWNPKTGQPLHKIT 229 (399)
T ss_pred EEEecCCCceeEEec
Confidence 89888776655555
No 99
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.67 E-value=5e-16 Score=165.83 Aligned_cols=174 Identities=20% Similarity=0.430 Sum_probs=136.1
Q ss_pred CCCEEEEEeCCCeEEEEeCCCC-------CCCCCCCCeEEEEECC-CCCeEEEEeCCCeEEEEECCCC---eEEEEEccC
Q 004217 80 ARRGLASWVEAESLHHLRPKYC-------PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTG---SCLKVLHGH 148 (767)
Q Consensus 80 ~g~~LaSgs~DgsIrlWd~~t~-------~L~gH~~sVtsVaFSp-DG~~LASgs~DGtVrVWDl~tg---~~l~~L~gH 148 (767)
....|.+|.--+.|++|...++ .+.+|+.+|-.++||| ....|++|+.||+|+|||++.+ .++.+ +.|
T Consensus 223 ~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh 301 (440)
T KOG0302|consen 223 KTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAH 301 (440)
T ss_pred cccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-ecc
Confidence 3445777777788999998775 5789999999999999 5568999999999999999987 34443 889
Q ss_pred CCCcEEEEEccCCCcEEEEEeCCCeEEEEECCC---CeEEEeec-CCCCeEEEEEcCCCC-EEEEE-ECCcEEEEEcCCC
Q 004217 149 RRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST---AECIGSRD-FYRPIASIAFHASGE-LLAVA-SGHKLYIWRYNMR 222 (767)
Q Consensus 149 ~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~t---g~~i~~l~-h~~~VtsVafSPdG~-~LAsg-Sdd~V~VWDl~t~ 222 (767)
.+.|+.|.|+. +..+|++|+.||+++|||++. ++++..++ |..+|++|.|+|... .|+++ .|+.|.+||+...
T Consensus 302 ~sDVNVISWnr-~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE 380 (440)
T KOG0302|consen 302 NSDVNVISWNR-REPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVE 380 (440)
T ss_pred CCceeeEEccC-CcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeecc
Confidence 99999999998 666999999999999999986 55666765 899999999999764 44444 4666999998643
Q ss_pred cc-------------ccCCeEEecC--CCCeEEEEEccCCCeEEEEEe
Q 004217 223 EE-------------TSSPRIVLRT--RRSLRAVHFHPHAAPLLLTAE 255 (767)
Q Consensus 223 ~~-------------~~~~~~l~~h--~~~VtsVaFSPDG~~LlaSgs 255 (767)
.. ..+++.+.-| ...|..|.|++.-.-++++..
T Consensus 381 ~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa 428 (440)
T KOG0302|consen 381 ADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTA 428 (440)
T ss_pred CChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEec
Confidence 22 0123445555 456889999998765655544
No 100
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.67 E-value=1.6e-15 Score=162.13 Aligned_cols=184 Identities=17% Similarity=0.220 Sum_probs=151.5
Q ss_pred ceEEEEEEcCCCEEEEEeCCCeEEEEeCCCC-----------------------------CCCCCCCCeEEEEECCCCCe
Q 004217 71 SQIFEAGRDARRGLASWVEAESLHHLRPKYC-----------------------------PLSPPPRSTIAAAFSPDGKT 121 (767)
Q Consensus 71 s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~-----------------------------~L~gH~~sVtsVaFSpDG~~ 121 (767)
.+..+....++.++++++.|.+|++|+.... .+.||..+|.++.|++ ...
T Consensus 195 ~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v 273 (423)
T KOG0313|consen 195 SVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATV 273 (423)
T ss_pred ceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCc
Confidence 3667777889999999999999999993210 2569999999999997 778
Q ss_pred EEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCe--EEE--eecCCCCeEEE
Q 004217 122 LASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAE--CIG--SRDFYRPIASI 197 (767)
Q Consensus 122 LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~--~i~--~l~h~~~VtsV 197 (767)
+++++.|++|++||+.++.++.++.+ ...++++..+| ..++|++|+.|..+++||.+++. .+. ..+|...|.++
T Consensus 274 ~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~-~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssv 351 (423)
T KOG0313|consen 274 IYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSP-LSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSV 351 (423)
T ss_pred eEeecccceEEEEEeecccceeeeec-CcceeEeeccc-ccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhhe
Confidence 99999999999999999998888875 46689999999 99999999999999999999754 222 25799999999
Q ss_pred EEcCCCC-EEEEEEC-CcEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCCcC
Q 004217 198 AFHASGE-LLAVASG-HKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLD 260 (767)
Q Consensus 198 afSPdG~-~LAsgSd-d~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgsvwdl~ 260 (767)
.|+|... .|++++. +.+++||+|..+. +...+.+|.+.|.++.|+.. ..++++|.+..++
T Consensus 352 kwsp~~~~~~~S~S~D~t~klWDvRS~k~--plydI~~h~DKvl~vdW~~~-~~IvSGGaD~~l~ 413 (423)
T KOG0313|consen 352 KWSPTNEFQLVSGSYDNTVKLWDVRSTKA--PLYDIAGHNDKVLSVDWNEG-GLIVSGGADNKLR 413 (423)
T ss_pred ecCCCCceEEEEEecCCeEEEEEeccCCC--cceeeccCCceEEEEeccCC-ceEEeccCcceEE
Confidence 9999886 5666664 5599999998874 34578899999999999854 4466655555554
No 101
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.66 E-value=4.9e-16 Score=177.28 Aligned_cols=174 Identities=18% Similarity=0.284 Sum_probs=147.4
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECC-CCCeEEEEeCCCeEEEEECCC-CeEEEEEccCCCCc
Q 004217 79 DARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQT-GSCLKVLHGHRRTP 152 (767)
Q Consensus 79 d~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSp-DG~~LASgs~DGtVrVWDl~t-g~~l~~L~gH~~~V 152 (767)
..-..|++|+.|+.|++||++.. .+.+...+|.+|+|+| .+.+++++.+.|.+++||++. .++...|..|.+.|
T Consensus 144 tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV 223 (839)
T KOG0269|consen 144 TEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPV 223 (839)
T ss_pred CCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCce
Confidence 35678999999999999999865 4667888999999999 889999999999999999986 45678889999999
Q ss_pred EEEEEccCCCcEEEEEeCCCeEEEEECCCCeE--EEeecCCCCeEEEEEcCCCC-EEEEEE--CCc-EEEEEcCCCcccc
Q 004217 153 WVVRFHPLNPTIIASGSLDHEVRLWNASTAEC--IGSRDFYRPIASIAFHASGE-LLAVAS--GHK-LYIWRYNMREETS 226 (767)
Q Consensus 153 ~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~--i~~l~h~~~VtsVafSPdG~-~LAsgS--dd~-V~VWDl~t~~~~~ 226 (767)
.++.|+| +..+||||+.|+.|+|||+.+.+. +.++....+|.+++|-|..+ +||+++ .+. |+|||++..-.
T Consensus 224 ~c~nwhP-nr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYI-- 300 (839)
T KOG0269|consen 224 LCLNWHP-NREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYI-- 300 (839)
T ss_pred EEEeecC-CCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccc--
Confidence 9999999 999999999999999999986554 45567788999999999886 577776 344 99999987654
Q ss_pred CCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217 227 SPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (767)
Q Consensus 227 ~~~~l~~h~~~VtsVaFSPDG~~LlaSgs 255 (767)
+...+..|...++.++|......++.+++
T Consensus 301 P~~t~~eH~~~vt~i~W~~~d~~~l~s~s 329 (839)
T KOG0269|consen 301 PYATFLEHTDSVTGIAWDSGDRINLWSCS 329 (839)
T ss_pred cceeeeccCccccceeccCCCceeeEeec
Confidence 45678899999999999875555555554
No 102
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.66 E-value=2.3e-15 Score=165.13 Aligned_cols=172 Identities=19% Similarity=0.263 Sum_probs=147.2
Q ss_pred CCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEE
Q 004217 90 AESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTII 165 (767)
Q Consensus 90 DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lL 165 (767)
...+.+|+..++ .+......|.+++|-.||++||+|...|.|+|+|..+...++.+.+|+.+|..+.|+|.++..|
T Consensus 47 S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l 126 (487)
T KOG0310|consen 47 SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTML 126 (487)
T ss_pred ccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEE
Confidence 456888888776 3556778899999999999999999999999999777667888999999999999999899999
Q ss_pred EEEeCCCeEEEEECCCCeEEEe-ecCCCCeEEEEEcCCCC-EEEEEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEE
Q 004217 166 ASGSLDHEVRLWNASTAECIGS-RDFYRPIASIAFHASGE-LLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVH 242 (767)
Q Consensus 166 aSgS~DGtVrIWDl~tg~~i~~-l~h~~~VtsVafSPdG~-~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVa 242 (767)
++|+.|+.+++||+.+...+.. .+|.+.|.|.+|+|... ++++|+.|+ |++||++.... ......|..+|.++.
T Consensus 127 ~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~---~v~elnhg~pVe~vl 203 (487)
T KOG0310|consen 127 VSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTS---RVVELNHGCPVESVL 203 (487)
T ss_pred EecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCc---eeEEecCCCceeeEE
Confidence 9999999999999999886544 46999999999999765 778888555 99999998853 235678999999999
Q ss_pred EccCCCeEEEEEe----eCCcCCCCc
Q 004217 243 FHPHAAPLLLTAE----VNDLDSSES 264 (767)
Q Consensus 243 FSPDG~~LlaSgs----vwdl~s~~~ 264 (767)
|-|.|..++++++ +||+..+..
T Consensus 204 ~lpsgs~iasAgGn~vkVWDl~~G~q 229 (487)
T KOG0310|consen 204 ALPSGSLIASAGGNSVKVWDLTTGGQ 229 (487)
T ss_pred EcCCCCEEEEcCCCeEEEEEecCCce
Confidence 9999997777765 898885544
No 103
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=4.8e-15 Score=151.22 Aligned_cols=167 Identities=17% Similarity=0.197 Sum_probs=137.3
Q ss_pred CCCEEEEEeCCCeEEEEeCCCC-------CCCCCCCCeEEEEECC--CCCeEEEEeCCCeEEEEECCCCe--EEEEEccC
Q 004217 80 ARRGLASWVEAESLHHLRPKYC-------PLSPPPRSTIAAAFSP--DGKTLASTHGDHTVKIIDCQTGS--CLKVLHGH 148 (767)
Q Consensus 80 ~g~~LaSgs~DgsIrlWd~~t~-------~L~gH~~sVtsVaFSp--DG~~LASgs~DGtVrVWDl~tg~--~l~~L~gH 148 (767)
-|++|++++.|++|+++..... +|.||.++|..++|.. -|.+||+++.||.|.||.-++|+ .......|
T Consensus 22 ygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h 101 (299)
T KOG1332|consen 22 YGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAH 101 (299)
T ss_pred hcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhh
Confidence 5889999999999999998764 4789999999999987 89999999999999999988874 23456789
Q ss_pred CCCcEEEEEccCC-CcEEEEEeCCCeEEEEECCCC-eEE-Ee--ecCCCCeEEEEEcCC---C-----------CEEEEE
Q 004217 149 RRTPWVVRFHPLN-PTIIASGSLDHEVRLWNASTA-ECI-GS--RDFYRPIASIAFHAS---G-----------ELLAVA 209 (767)
Q Consensus 149 ~~~V~sLafsP~d-g~lLaSgS~DGtVrIWDl~tg-~~i-~~--l~h~~~VtsVafSPd---G-----------~~LAsg 209 (767)
...|++++|.|.+ +-.|++++.||+|.|.++++. .-. .. ..|.-.|++++|.|- | +.|++|
T Consensus 102 ~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSg 181 (299)
T KOG1332|consen 102 SASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSG 181 (299)
T ss_pred cccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeecc
Confidence 9999999999933 347888999999999998864 222 22 348889999999986 4 468888
Q ss_pred ECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCC
Q 004217 210 SGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHA 247 (767)
Q Consensus 210 Sdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG 247 (767)
+-|. |+||+.....-.. ...+.+|.+.|+.++|.|.-
T Consensus 182 GcDn~VkiW~~~~~~w~~-e~~l~~H~dwVRDVAwaP~~ 219 (299)
T KOG1332|consen 182 GCDNLVKIWKFDSDSWKL-ERTLEGHKDWVRDVAWAPSV 219 (299)
T ss_pred CCccceeeeecCCcchhh-hhhhhhcchhhhhhhhcccc
Confidence 8555 9999998863222 34588999999999999975
No 104
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.64 E-value=3.7e-15 Score=161.91 Aligned_cols=174 Identities=19% Similarity=0.243 Sum_probs=147.9
Q ss_pred CCCEEEEEeCCCeEEEEeCCCC-------C------------------CCCCCCCeEEEEECCC-CCeEEEEeCCCeEEE
Q 004217 80 ARRGLASWVEAESLHHLRPKYC-------P------------------LSPPPRSTIAAAFSPD-GKTLASTHGDHTVKI 133 (767)
Q Consensus 80 ~g~~LaSgs~DgsIrlWd~~t~-------~------------------L~gH~~sVtsVaFSpD-G~~LASgs~DGtVrV 133 (767)
.|.+++.|..|-.|.+||+.-. + -.+|+..|.+++|+.. .+.||||+.|.+|++
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 3678999999999999998631 0 2269999999999984 567899999999999
Q ss_pred EECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCe-EEEeecCCCCeEEEEEcCCCCE-EEEEEC
Q 004217 134 IDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAE-CIGSRDFYRPIASIAFHASGEL-LAVASG 211 (767)
Q Consensus 134 WDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~-~i~~l~h~~~VtsVafSPdG~~-LAsgSd 211 (767)
||+.+|++..++..|.+.|.++.|+|....+|++|+.|++|.+.|.+... .-..+...+.|..++|+|.... ++++.+
T Consensus 271 WD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~td 350 (463)
T KOG0270|consen 271 WDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTD 350 (463)
T ss_pred EEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecC
Confidence 99999999999999999999999999889999999999999999999533 3344677899999999998864 445555
Q ss_pred Cc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217 212 HK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (767)
Q Consensus 212 d~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs 255 (767)
++ |+-+|+|.... +...+..|...|.+|++++.-..++++++
T Consensus 351 dG~v~~~D~R~~~~--~vwt~~AHd~~ISgl~~n~~~p~~l~t~s 393 (463)
T KOG0270|consen 351 DGTVYYFDIRNPGK--PVWTLKAHDDEISGLSVNIQTPGLLSTAS 393 (463)
T ss_pred CceEEeeecCCCCC--ceeEEEeccCCcceEEecCCCCcceeecc
Confidence 55 99999998753 34588899999999999999888888765
No 105
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.64 E-value=3.7e-15 Score=160.68 Aligned_cols=190 Identities=16% Similarity=0.159 Sum_probs=154.9
Q ss_pred eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEcc
Q 004217 72 QIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHG 147 (767)
Q Consensus 72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~g 147 (767)
...+.+..++..+++.+.|+.+++|+.... +|.+|++.|+++.|......+++|+.|.+||+||+....|.+++.
T Consensus 222 it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l- 300 (459)
T KOG0288|consen 222 ITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL- 300 (459)
T ss_pred cceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccc-
Confidence 455667778999999999999999999876 688999999999999987779999999999999999998887764
Q ss_pred CCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEE-CCcEEEEEcCCCcccc
Q 004217 148 HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETS 226 (767)
Q Consensus 148 H~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgS-dd~V~VWDl~t~~~~~ 226 (767)
....+..|..+ ...++||-.|++|++||+++..+.......+.|+++..+++|..|.+++ +|.+.+.|+++.+...
T Consensus 301 ~~S~cnDI~~~---~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~ 377 (459)
T KOG0288|consen 301 PGSQCNDIVCS---ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQ 377 (459)
T ss_pred ccccccceEec---ceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEE
Confidence 34556777775 4789999999999999999999999999888999999999999887777 6669999999987544
Q ss_pred CCeE-EecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcc
Q 004217 227 SPRI-VLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESS 265 (767)
Q Consensus 227 ~~~~-l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s~~~~ 265 (767)
.... -.......+.+.|||++.|+++++. +|++..++..
T Consensus 378 ~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE 422 (459)
T KOG0288|consen 378 TFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLE 422 (459)
T ss_pred EeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEE
Confidence 1111 0112445899999999998777654 6666554443
No 106
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=1.2e-14 Score=152.68 Aligned_cols=252 Identities=15% Similarity=0.139 Sum_probs=174.6
Q ss_pred CcceEEEEEEcCCCEEEEEeCCCeEEEEeCCCCCCCCC--------CCCeEEEEECCCCCeEE-EEeCCCeEEEEECCC-
Q 004217 69 SFSQIFEAGRDARRGLASWVEAESLHHLRPKYCPLSPP--------PRSTIAAAFSPDGKTLA-STHGDHTVKIIDCQT- 138 (767)
Q Consensus 69 s~s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~L~gH--------~~sVtsVaFSpDG~~LA-Sgs~DGtVrVWDl~t- 138 (767)
......++++.+|+.|++.+.|++|++|+++.-..+.| -+.-+.+.|+||.+-++ ++....++++|.+..
T Consensus 86 ~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~ 165 (420)
T KOG2096|consen 86 KKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKK 165 (420)
T ss_pred CCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEeeec
Confidence 44588999999999999999999999999976433333 23468899999987654 445556899997643
Q ss_pred --CeEE---------EEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec-CCCCeEEEEEcCCCCEE
Q 004217 139 --GSCL---------KVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELL 206 (767)
Q Consensus 139 --g~~l---------~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~-h~~~VtsVafSPdG~~L 206 (767)
|... ..-+.|.-.|..+-..- ++.+|+|++.|.+|.|||++ |+.+..+. .....+..+.+|+|++|
T Consensus 166 ~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~-~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFi 243 (420)
T KOG2096|consen 166 TDGSGSHHFVHIDNLEFERKHQVDIINIGIAG-NAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFI 243 (420)
T ss_pred ccCCCCcccccccccccchhcccceEEEeecC-CceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEE
Confidence 2211 11134666677777776 88999999999999999999 77777765 45566778899999999
Q ss_pred EEEEC-CcEEEEEcCCC-----ccccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCCcCCCCcceeEeecCCCccCCCC
Q 004217 207 AVASG-HKLYIWRYNMR-----EETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPP 280 (767)
Q Consensus 207 AsgSd-d~V~VWDl~t~-----~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgsvwdl~s~~~~~~l~t~sG~~~~p~~ 280 (767)
++++- -.|++|.+--. +++...+.+.+|...|.+++||++...+++.+.+..++.|+.-..+..
T Consensus 244 a~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~---------- 313 (420)
T KOG2096|consen 244 AVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEA---------- 313 (420)
T ss_pred EEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEec----------
Confidence 99884 45999986422 233345678999999999999999999988877322222222111110
Q ss_pred eEEEecCCCCCCCceeeccC---CCCCCceeeEEecCCCEEEEeecCCCCCCcccccccccCCceeeeeccCCCCceeee
Q 004217 281 VICMAGAHSSSHPGLAEEVP---LITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQYELV 357 (767)
Q Consensus 281 ~v~l~~~~Ssd~~~L~sg~~---~~slpil~psFSpDg~rIva~~~~~d~Gs~~~~~~~~ss~~~~l~~~~~~~~q~~~~ 357 (767)
..|...|..++. .....-.....+|.|+.+++ |.+..|+.|..++++-+.+
T Consensus 314 --------~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~------------------s~gs~l~~~~se~g~~~~~ 367 (420)
T KOG2096|consen 314 --------GQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAV------------------SFGSDLKVFASEDGKDYPE 367 (420)
T ss_pred --------CCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEe------------------ecCCceEEEEcccCccchh
Confidence 011111111110 00111226788899998887 5666788999988777666
Q ss_pred e
Q 004217 358 L 358 (767)
Q Consensus 358 ~ 358 (767)
+
T Consensus 368 ~ 368 (420)
T KOG2096|consen 368 L 368 (420)
T ss_pred H
Confidence 5
No 107
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=1.1e-14 Score=152.83 Aligned_cols=213 Identities=15% Similarity=0.162 Sum_probs=158.0
Q ss_pred ceecccccccccCCCccCcceeecccccceecCCcceEEEEEEcCCCEEEEEeCCCeEEEEeCCCCCCCCC----CCCeE
Q 004217 36 RNVFGLLAQREVAPRTKHSSKRLLGETARKCSGSFSQIFEAGRDARRGLASWVEAESLHHLRPKYCPLSPP----PRSTI 111 (767)
Q Consensus 36 rnVf~~~~kre~~~~~~~~sk~~wd~~~~~~~~s~s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~L~gH----~~sVt 111 (767)
-.+|++..+.+ ........-||+.-+.-...-...-+.+.+++.+|++++.|.+|.+|+++ +++.+| ...-+
T Consensus 157 l~vyk~~K~~d---G~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~ 232 (420)
T KOG2096|consen 157 LCVYKLVKKTD---GSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNY 232 (420)
T ss_pred EEEEEeeeccc---CCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecccccccc
Confidence 45676655554 22333344455443222222224446677899999999999999999998 544433 34567
Q ss_pred EEEECCCCCeEEEEeCCCeEEEEECC---CC-----eEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCC-
Q 004217 112 AAAFSPDGKTLASTHGDHTVKIIDCQ---TG-----SCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTA- 182 (767)
Q Consensus 112 sVaFSpDG~~LASgs~DGtVrVWDl~---tg-----~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg- 182 (767)
..+.||+|++|++++.--.|+||.+- .| +.+..|+||+..|..++|++ +...+++.+.||+++|||+.-.
T Consensus 233 ~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn-~S~r~vtvSkDG~wriwdtdVrY 311 (420)
T KOG2096|consen 233 DAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSN-SSTRAVTVSKDGKWRIWDTDVRY 311 (420)
T ss_pred ceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCC-CcceeEEEecCCcEEEeeccceE
Confidence 88999999999999998899999862 33 24567899999999999999 9999999999999999998631
Q ss_pred ------eEEEee-----cCCCCeEEEEEcCCCCEEEEEECCcEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEE
Q 004217 183 ------ECIGSR-----DFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLL 251 (767)
Q Consensus 183 ------~~i~~l-----~h~~~VtsVafSPdG~~LAsgSdd~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~Ll 251 (767)
+.++.. ........++.+|+|+.||.+....|+++..++++... .....|...|.+++|++||++++
T Consensus 312 ~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~--~~e~~h~~~Is~is~~~~g~~~a 389 (420)
T KOG2096|consen 312 EAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYP--ELEDIHSTTISSISYSSDGKYIA 389 (420)
T ss_pred ecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccch--hHHHhhcCceeeEEecCCCcEEe
Confidence 222221 12234447999999999999988889999999877533 33456899999999999999877
Q ss_pred EEEe
Q 004217 252 LTAE 255 (767)
Q Consensus 252 aSgs 255 (767)
+.|.
T Consensus 390 tcGd 393 (420)
T KOG2096|consen 390 TCGD 393 (420)
T ss_pred eecc
Confidence 7664
No 108
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.62 E-value=1.9e-14 Score=155.16 Aligned_cols=149 Identities=18% Similarity=0.196 Sum_probs=129.7
Q ss_pred CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCC---eEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEE
Q 004217 102 PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTG---SCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWN 178 (767)
Q Consensus 102 ~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg---~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWD 178 (767)
.+..|+..|+-+.||++|++||+++.|.+..||++... +..+++.+|..+|..+.|+| |.+++++|+.|..+++||
T Consensus 219 il~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSP-DdryLlaCg~~e~~~lwD 297 (519)
T KOG0293|consen 219 ILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSP-DDRYLLACGFDEVLSLWD 297 (519)
T ss_pred hHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECC-CCCeEEecCchHheeecc
Confidence 47799999999999999999999999999999998654 34688899999999999999 999999999999999999
Q ss_pred CCCCeEEEeecCC--CCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccCCeEEecC-CCCeEEEEEccCCCeEEEEE
Q 004217 179 ASTAECIGSRDFY--RPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRT-RRSLRAVHFHPHAAPLLLTA 254 (767)
Q Consensus 179 l~tg~~i~~l~h~--~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h-~~~VtsVaFSPDG~~LlaSg 254 (767)
+.+|.+...+.+. ..+.+++|.|||..+++|+.|+ +..||++...... ..+. ...|.+++..+||+++++.+
T Consensus 298 v~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~----W~gvr~~~v~dlait~Dgk~vl~v~ 373 (519)
T KOG0293|consen 298 VDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGN----WEGVRDPKVHDLAITYDGKYVLLVT 373 (519)
T ss_pred CCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhc----ccccccceeEEEEEcCCCcEEEEEe
Confidence 9999999887754 7899999999999999999666 9999998664322 2222 25699999999999999887
Q ss_pred e
Q 004217 255 E 255 (767)
Q Consensus 255 s 255 (767)
.
T Consensus 374 ~ 374 (519)
T KOG0293|consen 374 V 374 (519)
T ss_pred c
Confidence 6
No 109
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.62 E-value=2.4e-15 Score=159.95 Aligned_cols=243 Identities=13% Similarity=0.118 Sum_probs=178.0
Q ss_pred EEEEEcCC-CEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCC----------
Q 004217 74 FEAGRDAR-RGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT---------- 138 (767)
Q Consensus 74 ~vA~sd~g-~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~t---------- 138 (767)
+++-..+. ..+++|+.||.|++||+... .+..|.+.|..|++.. ..+++++.|.+|+.|-++.
T Consensus 71 ~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~p~~tilg~s 148 (433)
T KOG0268|consen 71 CLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGPPLHTILGKS 148 (433)
T ss_pred hhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccCCcceeeeccc
Confidence 34433333 56889999999999999874 5889999999999987 6788899999999887321
Q ss_pred -----------------C-----------eEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecC
Q 004217 139 -----------------G-----------SCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDF 190 (767)
Q Consensus 139 -----------------g-----------~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h 190 (767)
| .++..+.--.+.|.++.|+|....+|++|..|+.|.|||++.+.+++..-.
T Consensus 149 ~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~ 228 (433)
T KOG0268|consen 149 VYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVIL 228 (433)
T ss_pred cccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeee
Confidence 1 123333344567889999997788999999999999999999999998777
Q ss_pred CCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCCcCCCCcceeEe
Q 004217 191 YRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLA 269 (767)
Q Consensus 191 ~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgsvwdl~s~~~~~~l~ 269 (767)
...-+.|+|+|.+-.+++++.|. ++.||++.... +.....+|.+.|.+|+|||.|+-+++++-+..++ .+.
T Consensus 229 ~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~--p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIR------If~ 300 (433)
T KOG0268|consen 229 TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSR--PLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIR------IFP 300 (433)
T ss_pred eccccceecCccccceeeccccccceehhhhhhcc--cchhhcccceeEEEeccCCCcchhccccccceEE------Eee
Confidence 78888999999777777777666 99999987665 3457788999999999999999877665433333 122
Q ss_pred ecCCCccCCCCeEEEecCCCCCCCceeeccCCCCCCceeeEEecCCCEEEEeecCCCCCCcccccccccCCceeeeeccC
Q 004217 270 TSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYST 349 (767)
Q Consensus 270 t~sG~~~~p~~~v~l~~~~Ssd~~~L~sg~~~~slpil~psFSpDg~rIva~~~~~d~Gs~~~~~~~~ss~~~~l~~~~~ 349 (767)
...++.. |-.+... --.++.+.||-|.++|+. +|....+..|.+
T Consensus 301 ~~~~~SR--------------diYhtkR-----Mq~V~~Vk~S~Dskyi~S-----------------GSdd~nvRlWka 344 (433)
T KOG0268|consen 301 VNHGHSR--------------DIYHTKR-----MQHVFCVKYSMDSKYIIS-----------------GSDDGNVRLWKA 344 (433)
T ss_pred cCCCcch--------------hhhhHhh-----hheeeEEEEeccccEEEe-----------------cCCCcceeeeec
Confidence 2222211 1111100 113456889999999997 233445677888
Q ss_pred CCCceeeeeccCC
Q 004217 350 PSGQYELVLSPIA 362 (767)
Q Consensus 350 ~~~q~~~~~~p~~ 362 (767)
-.-+....++|.+
T Consensus 345 ~Aseklgv~t~rE 357 (433)
T KOG0268|consen 345 KASEKLGVITPRE 357 (433)
T ss_pred chhhhcCCCChhH
Confidence 7777777777765
No 110
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.61 E-value=5.5e-15 Score=154.74 Aligned_cols=186 Identities=17% Similarity=0.241 Sum_probs=157.8
Q ss_pred EEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEEC------CC------
Q 004217 75 EAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDC------QT------ 138 (767)
Q Consensus 75 vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl------~t------ 138 (767)
++.......+.+.+.|.+-++|.++++ ++.||.+.|++|+|++.+.++++++.|++..||.. ..
T Consensus 154 Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~ 233 (481)
T KOG0300|consen 154 VAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSD 233 (481)
T ss_pred ehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCC
Confidence 444455667778899999999999987 57899999999999999999999999999999972 00
Q ss_pred ------------------------C----eEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEee-c
Q 004217 139 ------------------------G----SCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-D 189 (767)
Q Consensus 139 ------------------------g----~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l-~ 189 (767)
+ .++..|++|.+.|.+..|-. +++.+++++.|.+..+||+++++.+..+ +
T Consensus 234 hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~-gg~Q~vTaSWDRTAnlwDVEtge~v~~LtG 312 (481)
T KOG0300|consen 234 HSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA-GGQQMVTASWDRTANLWDVETGEVVNILTG 312 (481)
T ss_pred CCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhc-CcceeeeeeccccceeeeeccCceeccccC
Confidence 0 24567889999999999998 9999999999999999999999999886 5
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCC
Q 004217 190 FYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSE 263 (767)
Q Consensus 190 h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s~~ 263 (767)
|....+.++-+|..+++++++.|. .++||++.. +.....+.+|.+.|+++.|.-|.+ ++.++. +||++...
T Consensus 313 Hd~ELtHcstHptQrLVvTsSrDtTFRLWDFRea--I~sV~VFQGHtdtVTS~vF~~dd~-vVSgSDDrTvKvWdLrNMR 389 (481)
T KOG0300|consen 313 HDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREA--IQSVAVFQGHTDTVTSVVFNTDDR-VVSGSDDRTVKVWDLRNMR 389 (481)
T ss_pred cchhccccccCCcceEEEEeccCceeEeccchhh--cceeeeecccccceeEEEEecCCc-eeecCCCceEEEeeecccc
Confidence 889999999999999999999776 999999943 334567899999999999998887 555433 88888654
Q ss_pred c
Q 004217 264 S 264 (767)
Q Consensus 264 ~ 264 (767)
.
T Consensus 390 s 390 (481)
T KOG0300|consen 390 S 390 (481)
T ss_pred C
Confidence 4
No 111
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.61 E-value=9.4e-15 Score=164.39 Aligned_cols=174 Identities=17% Similarity=0.257 Sum_probs=151.9
Q ss_pred EcCCCEEEEEeCCCeEEEEeCCCC------CCCCCCCCeEEEEE-CCCCCeEEEEeCCCeEEEEECCCCe--EE------
Q 004217 78 RDARRGLASWVEAESLHHLRPKYC------PLSPPPRSTIAAAF-SPDGKTLASTHGDHTVKIIDCQTGS--CL------ 142 (767)
Q Consensus 78 sd~g~~LaSgs~DgsIrlWd~~t~------~L~gH~~sVtsVaF-SpDG~~LASgs~DGtVrVWDl~tg~--~l------ 142 (767)
...++.|++++.|.+|++|+.... .+..|.+.|.|+++ .++..++|+|+-|+.|.|||+.++. .+
T Consensus 82 ~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~ 161 (735)
T KOG0308|consen 82 CGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNV 161 (735)
T ss_pred hcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcccc
Confidence 347889999999999999999764 57899999999999 7899999999999999999999872 22
Q ss_pred --EEEc-cCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEe-ecCCCCeEEEEEcCCCCEEEEEECCc-EEEE
Q 004217 143 --KVLH-GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-RDFYRPIASIAFHASGELLAVASGHK-LYIW 217 (767)
Q Consensus 143 --~~L~-gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~-l~h~~~VtsVafSPdG~~LAsgSdd~-V~VW 217 (767)
..+. |++..|++++.++ .+..|++|+..+.+++||.++.+.+.. .+|...|..+..++||+.+++++.|+ |++|
T Consensus 162 t~~sl~sG~k~siYSLA~N~-t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlW 240 (735)
T KOG0308|consen 162 TVNSLGSGPKDSIYSLAMNQ-TGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLW 240 (735)
T ss_pred ccccCCCCCccceeeeecCC-cceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEee
Confidence 2233 8999999999999 888999999999999999999876655 56999999999999999999988666 9999
Q ss_pred EcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217 218 RYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (767)
Q Consensus 218 Dl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs 255 (767)
|+....++. .+..|...|+++..+|+=..+.+++.
T Consensus 241 dLgqQrCl~---T~~vH~e~VWaL~~~~sf~~vYsG~r 275 (735)
T KOG0308|consen 241 DLGQQRCLA---TYIVHKEGVWALQSSPSFTHVYSGGR 275 (735)
T ss_pred eccccceee---eEEeccCceEEEeeCCCcceEEecCC
Confidence 999888755 68889999999999999887777766
No 112
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=3e-14 Score=165.41 Aligned_cols=188 Identities=16% Similarity=0.208 Sum_probs=156.4
Q ss_pred eEEEEEEcCCCEEEEEeCCCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEcc
Q 004217 72 QIFEAGRDARRGLASWVEAESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHG 147 (767)
Q Consensus 72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~----L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~g 147 (767)
....+.......+++++++++|..|....++ |...+-++.+++|+-+|+++|.|+.|-.|++-+..+......+++
T Consensus 57 ~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrg 136 (933)
T KOG1274|consen 57 ELVSSIACYSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRG 136 (933)
T ss_pred ceeEEEeecccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecc
Confidence 4555566677799999999999999998763 445567899999999999999999999999999999999999999
Q ss_pred CCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec---------CCCCeEEEEEcCCC-CEEEEEECCcEEEE
Q 004217 148 HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD---------FYRPIASIAFHASG-ELLAVASGHKLYIW 217 (767)
Q Consensus 148 H~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~---------h~~~VtsVafSPdG-~~LAsgSdd~V~VW 217 (767)
|.++|.++.|+| ++++|++.+-||+|++||+.++.+...+. ....+..++|+|+| ++++.+.++.|++|
T Consensus 137 h~apVl~l~~~p-~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy 215 (933)
T KOG1274|consen 137 HDAPVLQLSYDP-KGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVY 215 (933)
T ss_pred cCCceeeeeEcC-CCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEE
Confidence 999999999999 99999999999999999999988876643 13456789999995 56666678889999
Q ss_pred EcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCcCC
Q 004217 218 RYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDS 261 (767)
Q Consensus 218 Dl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s 261 (767)
+.......... ....+...+..++|+|+|+||+++.- +||+++
T Consensus 216 ~r~~we~~f~L-r~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 216 SRKGWELQFKL-RDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred ccCCceeheee-cccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 98887754411 12234445999999999999888765 888885
No 113
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.60 E-value=1.4e-14 Score=159.53 Aligned_cols=183 Identities=17% Similarity=0.203 Sum_probs=136.0
Q ss_pred eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC----------------CCCCCCCCeEEEEECCC-CCeEEEEeCCCeEEEE
Q 004217 72 QIFEAGRDARRGLASWVEAESLHHLRPKYC----------------PLSPPPRSTIAAAFSPD-GKTLASTHGDHTVKII 134 (767)
Q Consensus 72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----------------~L~gH~~sVtsVaFSpD-G~~LASgs~DGtVrVW 134 (767)
......+..+..|+..+.....+++|-... ..+||...++|.+|+|+ ...+++++.||++|||
T Consensus 217 i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiW 296 (641)
T KOG0772|consen 217 INSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIW 296 (641)
T ss_pred cceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEE
Confidence 344556667777777777778888886532 24699999999999994 4578999999999999
Q ss_pred ECCCCe-EEEEEc-----cCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeE--EEe--ecCCC--CeEEEEEcCC
Q 004217 135 DCQTGS-CLKVLH-----GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC--IGS--RDFYR--PIASIAFHAS 202 (767)
Q Consensus 135 Dl~tg~-~l~~L~-----gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~--i~~--l~h~~--~VtsVafSPd 202 (767)
|+..-+ .+..|+ +-+-.++.++|+| ++++|++|..||.|.+||..+... ... -.|.. .|+||+||++
T Consensus 297 dv~~~k~q~qVik~k~~~g~Rv~~tsC~~nr-dg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~d 375 (641)
T KOG0772|consen 297 DVNNTKSQLQVIKTKPAGGKRVPVTSCAWNR-DGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYD 375 (641)
T ss_pred ecCCchhheeEEeeccCCCcccCceeeecCC-CcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccc
Confidence 998643 333332 2334688999999 999999999999999999864322 111 23555 8999999999
Q ss_pred CCEEEEEEC-CcEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217 203 GELLAVASG-HKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (767)
Q Consensus 203 G~~LAsgSd-d~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs 255 (767)
|++|++-+. +.+++||+++.++......-......-+.++||||.+.|+++.+
T Consensus 376 g~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS 429 (641)
T KOG0772|consen 376 GNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTS 429 (641)
T ss_pred cchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEeccc
Confidence 999999884 55999999988753322222233455678999999996666544
No 114
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.59 E-value=3.7e-14 Score=159.40 Aligned_cols=322 Identities=15% Similarity=0.101 Sum_probs=203.7
Q ss_pred eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC----------CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeE
Q 004217 72 QIFEAGRDARRGLASWVEAESLHHLRPKYC----------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSC 141 (767)
Q Consensus 72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----------~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~ 141 (767)
..+.+.......|+.+.+||.|.++|.+.. ....|...|.++.|-|-..+|++++.|.++++||++++++
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l 134 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRL 134 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecccee
Confidence 344445567788999999999999998654 2347999999999999777899999999999999999988
Q ss_pred EEE--EccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEE--------------------Ee--------ecCC
Q 004217 142 LKV--LHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECI--------------------GS--------RDFY 191 (767)
Q Consensus 142 l~~--L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i--------------------~~--------l~h~ 191 (767)
+.. +.||++.|.+++|.|.+...|++|+.||.|.|||++-...- +. ..+.
T Consensus 135 ~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s 214 (720)
T KOG0321|consen 135 VGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAAS 214 (720)
T ss_pred ecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccccccc
Confidence 766 89999999999999999999999999999999999743210 00 1122
Q ss_pred CCeEE---EEEcCCCCEEEEEEC-Cc-EEEEEcCCCccccC---C--eEEecC---CCCeEEEEEccCCCeEEEEEeeC-
Q 004217 192 RPIAS---IAFHASGELLAVASG-HK-LYIWRYNMREETSS---P--RIVLRT---RRSLRAVHFHPHAAPLLLTAEVN- 257 (767)
Q Consensus 192 ~~Vts---VafSPdG~~LAsgSd-d~-V~VWDl~t~~~~~~---~--~~l~~h---~~~VtsVaFSPDG~~LlaSgsvw- 257 (767)
..|.+ +.+.-|...||+++. |+ |+|||+++...... . ..+.-| ...+.++.....|.+|+++|.+.
T Consensus 215 ~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~s 294 (720)
T KOG0321|consen 215 NTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNS 294 (720)
T ss_pred CceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCc
Confidence 33444 555667788888884 54 99999997653221 1 111122 34577888888899999999843
Q ss_pred ----CcCCCCcceeEeecCCCccCCCCeEEEecCCCCCCCceeeccCCCCCCceeeEEecCCCEEEEeecCC--------
Q 004217 258 ----DLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEH-------- 325 (767)
Q Consensus 258 ----dl~s~~~~~~l~t~sG~~~~p~~~v~l~~~~Ssd~~~L~sg~~~~slpil~psFSpDg~rIva~~~~~-------- 325 (767)
++.. .....+..+.|+ ....+++....++++..+.+++.+...-+|.+.--...-.++++|+.+
T Consensus 295 Iy~ynm~s-~s~sP~~~~sg~---~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~p 370 (720)
T KOG0321|consen 295 IYFYNMRS-LSISPVAEFSGK---LNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLP 370 (720)
T ss_pred EEEEeccc-cCcCchhhccCc---ccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeecc
Confidence 3332 122233333443 345566666678899999999888777777433222232333333332
Q ss_pred -CCCCcccccccccCCceeeeeccCCCCceeeeeccCCCCCCCCCCCCCCccccccccc-cCCccccccccccccCCCCC
Q 004217 326 -DSGATRTQQSLRSSSSVRLLTYSTPSGQYELVLSPIASNRSSPMPDGTGTDSFVSEID-GALPQAAIGAVGTLDGLPEE 403 (767)
Q Consensus 326 -d~Gs~~~~~~~~ss~~~~l~~~~~~~~q~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 403 (767)
+.+...+. |...++..|+..++-.+.-.--.+...+-.+... ..++.+-. ....++..-+||-..++++.
T Consensus 371 S~~t~v~Tc-----SdD~~~kiW~l~~~l~e~~~adk~s~v~~~~~rf---k~~~p~~~nv~ss~~~t~~~pR~~~~r~~ 442 (720)
T KOG0321|consen 371 SATTPVATC-----SDDFRVKIWRLSNGLEEIYAADKDSIVYEYSRRF---KGHLPQVLNVNSSLRKTYKDPREGMNRIS 442 (720)
T ss_pred ccCCCceee-----ccCcceEEEeccCchhhccccccchhhhhhhhhh---hccccccccccccccccccchhhhccccc
Confidence 22222222 3344566677644333322211112222222221 11222221 12344556667776677766
Q ss_pred CC
Q 004217 404 RT 405 (767)
Q Consensus 404 ~~ 405 (767)
+.
T Consensus 443 ss 444 (720)
T KOG0321|consen 443 SS 444 (720)
T ss_pred cC
Confidence 54
No 115
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=1e-13 Score=145.52 Aligned_cols=186 Identities=16% Similarity=0.173 Sum_probs=148.2
Q ss_pred eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEcc
Q 004217 72 QIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHG 147 (767)
Q Consensus 72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~g 147 (767)
..+..++..|..|+.|..||.|-+||+.+. .+.+|..+|++++||+||++|++++.|..|++||+..|.+++.++
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir- 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR- 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-
Confidence 667778899999999999999999999885 588999999999999999999999999999999999999998887
Q ss_pred CCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEe-ec----CCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCC
Q 004217 148 HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-RD----FYRPIASIAFHASGELLAVASGHK-LYIWRYNM 221 (767)
Q Consensus 148 H~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~-l~----h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t 221 (767)
-..+|+...|+|.+.+.++..-.+..-.+-++..++.... .. ......+..|++.|+++++|...+ +.++|..+
T Consensus 105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t 184 (405)
T KOG1273|consen 105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAET 184 (405)
T ss_pred ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecch
Confidence 5688999999998888877777776666666665333222 11 112233446999999999998655 99999999
Q ss_pred CccccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCCcC
Q 004217 222 REETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLD 260 (767)
Q Consensus 222 ~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgsvwdl~ 260 (767)
.+.+...+.. ....|.++.|+-.|+++++-+++--++
T Consensus 185 ~e~vas~rit--s~~~IK~I~~s~~g~~liiNtsDRvIR 221 (405)
T KOG1273|consen 185 LECVASFRIT--SVQAIKQIIVSRKGRFLIINTSDRVIR 221 (405)
T ss_pred heeeeeeeec--hheeeeEEEEeccCcEEEEecCCceEE
Confidence 8765522211 136789999999999998877644444
No 116
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.57 E-value=2.4e-14 Score=162.12 Aligned_cols=209 Identities=14% Similarity=0.177 Sum_probs=160.4
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEE
Q 004217 79 DARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWV 154 (767)
Q Consensus 79 d~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~s 154 (767)
.++.+++.|+.|+.|.+|..... .|.+|...|.+++...++. +++||+|.+++||-. +++...+.+|+..|++
T Consensus 69 ~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWA 145 (745)
T KOG0301|consen 69 SDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWA 145 (745)
T ss_pred ccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchheee
Confidence 57778999999999999999775 5889999999999988887 999999999999975 5666779999999999
Q ss_pred EEEccCCCcEEEEEeCCCeEEEEECCCCeEEEee-cCCCCeEEEEEcCCCCEEEEEECCcEEEEEcCCCccccCCeEEec
Q 004217 155 VRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLR 233 (767)
Q Consensus 155 LafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l-~h~~~VtsVafSPdG~~LAsgSdd~V~VWDl~t~~~~~~~~~l~~ 233 (767)
+..-| .. .++||+.|++|++|.- +++++++ +|.+.|..+++-+++.+|-++.|+.|++||+ +++.+. ...+
T Consensus 146 v~~l~-e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge~l~---~~~g 217 (745)
T KOG0301|consen 146 VASLP-EN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDL-DGEVLL---EMHG 217 (745)
T ss_pred eeecC-CC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCCeEeecCCceEEEEec-cCceee---eeec
Confidence 99988 43 9999999999999975 6677775 5999999999998877765555666999999 455443 6889
Q ss_pred CCCCeEEEEEccCCCeEEEEEeeCCcCCCC---cceeEeecCCCccCCCCeEEEecCCCCCCCceeeccCCCCCCce
Q 004217 234 TRRSLRAVHFHPHAAPLLLTAEVNDLDSSE---SSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFL 307 (767)
Q Consensus 234 h~~~VtsVaFSPDG~~LlaSgsvwdl~s~~---~~~~l~t~sG~~~~p~~~v~l~~~~Ssd~~~L~sg~~~~slpil 307 (767)
|..-|++++..+++..+++++++..++-|+ +...+. -|..++|+...=....+..|.++...++|
T Consensus 218 htn~vYsis~~~~~~~Ivs~gEDrtlriW~~~e~~q~I~---------lPttsiWsa~~L~NgDIvvg~SDG~VrVf 285 (745)
T KOG0301|consen 218 HTNFVYSISMALSDGLIVSTGEDRTLRIWKKDECVQVIT---------LPTTSIWSAKVLLNGDIVVGGSDGRVRVF 285 (745)
T ss_pred cceEEEEEEecCCCCeEEEecCCceEEEeecCceEEEEe---------cCccceEEEEEeeCCCEEEeccCceEEEE
Confidence 999999999777777788888733333332 322222 13455666544444555666444443333
No 117
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=8.8e-15 Score=173.20 Aligned_cols=187 Identities=19% Similarity=0.231 Sum_probs=147.0
Q ss_pred CEEEEEeCCCeEEEEeCCCC----------CCCCCCCCeEEEEECCC-CCeEEEEeCCCeEEEEECCCCeEEEEEc--cC
Q 004217 82 RGLASWVEAESLHHLRPKYC----------PLSPPPRSTIAAAFSPD-GKTLASTHGDHTVKIIDCQTGSCLKVLH--GH 148 (767)
Q Consensus 82 ~~LaSgs~DgsIrlWd~~t~----------~L~gH~~sVtsVaFSpD-G~~LASgs~DGtVrVWDl~tg~~l~~L~--gH 148 (767)
+.|+.|.+||.|.+||...- +...|++.|..++|++. +++||+|+.||.|.|||+..-+.-..+. .-
T Consensus 81 GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~ 160 (1049)
T KOG0307|consen 81 GLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAP 160 (1049)
T ss_pred ceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCC
Confidence 45888999999999998762 46689999999999995 5599999999999999998755433331 24
Q ss_pred CCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecC---CCCeEEEEEcCCCC-EEEEEEC-Cc---EEEEEcC
Q 004217 149 RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDF---YRPIASIAFHASGE-LLAVASG-HK---LYIWRYN 220 (767)
Q Consensus 149 ~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h---~~~VtsVafSPdG~-~LAsgSd-d~---V~VWDl~ 220 (767)
.+.|.+++|+....++|++++.+|.+.|||++..+.+..+.. ...+..++|||++. .|+++++ |+ |.+||+|
T Consensus 161 ~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR 240 (1049)
T KOG0307|consen 161 PSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLR 240 (1049)
T ss_pred cccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeeccc
Confidence 568999999987889999999999999999999887776542 34588999999984 5666664 44 9999999
Q ss_pred CCccccCCeEEecCCCCeEEEEEccCCCeEEEE-Ee-----eCCcCCCCcceeEee
Q 004217 221 MREETSSPRIVLRTRRSLRAVHFHPHAAPLLLT-AE-----VNDLDSSESSLTLAT 270 (767)
Q Consensus 221 t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaS-gs-----vwdl~s~~~~~~l~t 270 (767)
.... +...+.+|...|.++.|++.+..++++ ++ .|+..+++....+-+
T Consensus 241 ~ass--P~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~ 294 (1049)
T KOG0307|consen 241 FASS--PLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPA 294 (1049)
T ss_pred ccCC--chhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCC
Confidence 7664 334667999999999999988555554 44 677776665544444
No 118
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.57 E-value=4.6e-14 Score=147.03 Aligned_cols=198 Identities=16% Similarity=0.234 Sum_probs=157.0
Q ss_pred CCCCCCeEEEEECC-CCCeEEEEeCCCeEEEEECCCCe------------EE---EEEccCCCCcEEEEEccCCCcEEEE
Q 004217 104 SPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGS------------CL---KVLHGHRRTPWVVRFHPLNPTIIAS 167 (767)
Q Consensus 104 ~gH~~sVtsVaFSp-DG~~LASgs~DGtVrVWDl~tg~------------~l---~~L~gH~~~V~sLafsP~dg~lLaS 167 (767)
..|.+.|+++...+ .|+++++|+.||.|.|||++... ++ .--.+|+-.|..+.|.|.|...|.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 46899999999999 89999999999999999997532 11 0113688899999999999999999
Q ss_pred EeCCCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCC---EEEEEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEE
Q 004217 168 GSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGE---LLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHF 243 (767)
Q Consensus 168 gS~DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~---~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaF 243 (767)
++-|.++++||..+-+....+..++.|++-+|+|-.. ++|+|.++- |++.|+..+.... .+.+|.+.|.+|.|
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH---~LsGHr~~vlaV~W 196 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSH---TLSGHRDGVLAVEW 196 (397)
T ss_pred ccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCccee---eeccccCceEEEEe
Confidence 9999999999999999999999999999999999654 677777665 9999999998755 88999999999999
Q ss_pred ccCCCeEEEEEe------eCCcCCC-CcceeEeecCCCccCCCCeEEEecCCCCCCCceeeccCCCCCCceeeEEecCCC
Q 004217 244 HPHAAPLLLTAE------VNDLDSS-ESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDE 316 (767)
Q Consensus 244 SPDG~~LlaSgs------vwdl~s~-~~~~~l~t~sG~~~~p~~~v~l~~~~Ssd~~~L~sg~~~~slpil~psFSpDg~ 316 (767)
+|...+++++++ .||++.. .+...+..+++. ++ +.+. .-+.....+.-.+|+.|+.
T Consensus 197 sp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k--~~-p~~~--------------~n~ah~gkvngla~tSd~~ 259 (397)
T KOG4283|consen 197 SPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTK--RP-PILK--------------TNTAHYGKVNGLAWTSDAR 259 (397)
T ss_pred ccCceeEEEecCCCceEEEEEeecccceeEEeecccCc--cC-cccc--------------ccccccceeeeeeecccch
Confidence 999999999876 8999854 344444433331 12 2222 1122334556788999998
Q ss_pred EEEEe
Q 004217 317 RISLQ 321 (767)
Q Consensus 317 rIva~ 321 (767)
++..-
T Consensus 260 ~l~~~ 264 (397)
T KOG4283|consen 260 YLASC 264 (397)
T ss_pred hhhhc
Confidence 87763
No 119
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.57 E-value=6.1e-14 Score=153.06 Aligned_cols=180 Identities=17% Similarity=0.167 Sum_probs=151.0
Q ss_pred ceEEEEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEc
Q 004217 71 SQIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH 146 (767)
Q Consensus 71 s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~ 146 (767)
..+++++++++++|++|..|..|.+|+..+. .+.+|.+.|.+++|-..-..|++++.|++|++|+++....+.++.
T Consensus 204 eil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetly 283 (479)
T KOG0299|consen 204 EILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLY 283 (479)
T ss_pred eeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHh
Confidence 4778999999999999999999999999987 378999999999999988899999999999999999999999999
Q ss_pred cCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccc
Q 004217 147 GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREET 225 (767)
Q Consensus 147 gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~ 225 (767)
||.+.|..|.-.. -++.+..|+.|.++++|++.....+....+.+.+-|++|-.+ .++++|++++ |.+|++.+.+.+
T Consensus 284 GHqd~v~~IdaL~-reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkpl 361 (479)
T KOG0299|consen 284 GHQDGVLGIDALS-RERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPL 361 (479)
T ss_pred CCccceeeechhc-ccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccCce
Confidence 9999999998776 566677777999999999976666666678889999999755 5777888777 999999887754
Q ss_pred cCCeEEecC-----------CCCeEEEEEccCCCeEEEEEe
Q 004217 226 SSPRIVLRT-----------RRSLRAVHFHPHAAPLLLTAE 255 (767)
Q Consensus 226 ~~~~~l~~h-----------~~~VtsVaFSPDG~~LlaSgs 255 (767)
- .....| ..+|++|+..|... |+++++
T Consensus 362 f--~~~~AHgv~~~~~~~~~~~Witsla~i~~sd-L~asGS 399 (479)
T KOG0299|consen 362 F--TSRLAHGVIPELDPVNGNFWITSLAVIPGSD-LLASGS 399 (479)
T ss_pred e--EeeccccccCCccccccccceeeeEecccCc-eEEecC
Confidence 3 111122 23899999999988 555543
No 120
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.56 E-value=4.6e-14 Score=154.82 Aligned_cols=178 Identities=12% Similarity=0.126 Sum_probs=147.0
Q ss_pred eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC-------CCC--CCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEE
Q 004217 72 QIFEAGRDARRGLASWVEAESLHHLRPKYC-------PLS--PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCL 142 (767)
Q Consensus 72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~-------~L~--gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l 142 (767)
+..+++++..+.+++|. .+-|++||+... +|. ....-|.++.+.|||+.|++|+.--+|.|||+......
T Consensus 422 VcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTpr 500 (705)
T KOG0639|consen 422 VCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPR 500 (705)
T ss_pred EEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcc
Confidence 55666788889999886 567999999753 122 34456899999999999999999999999999875433
Q ss_pred --EEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec-CCCCeEEEEEcCCCCEEEEEE-CCcEEEEE
Q 004217 143 --KVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVAS-GHKLYIWR 218 (767)
Q Consensus 143 --~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~-h~~~VtsVafSPdG~~LAsgS-dd~V~VWD 218 (767)
..+..-.-.++.++.+| |.++++++..||.|.|||+.+...++.+. |.+.+.||.+++||..|-+|+ |+.|+.||
T Consensus 501 ikaeltssapaCyALa~sp-DakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWD 579 (705)
T KOG0639|consen 501 IKAELTSSAPACYALAISP-DAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWD 579 (705)
T ss_pred hhhhcCCcchhhhhhhcCC-ccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehh
Confidence 23333334678899999 99999999999999999999999998875 999999999999999999999 56699999
Q ss_pred cCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217 219 YNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (767)
Q Consensus 219 l~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs 255 (767)
++++.++. .....+.|.++..+|++.+++++.+
T Consensus 580 lregrqlq----qhdF~SQIfSLg~cP~~dWlavGMe 612 (705)
T KOG0639|consen 580 LREGRQLQ----QHDFSSQIFSLGYCPTGDWLAVGME 612 (705)
T ss_pred hhhhhhhh----hhhhhhhheecccCCCccceeeecc
Confidence 99988655 2233678999999999999988765
No 121
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.56 E-value=9.6e-14 Score=144.66 Aligned_cols=176 Identities=16% Similarity=0.175 Sum_probs=145.0
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCCC-------------------CCCCCCCeEEEEECC-CCCeEEEEeCCCeEEEEECCC
Q 004217 79 DARRGLASWVEAESLHHLRPKYCP-------------------LSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQT 138 (767)
Q Consensus 79 d~g~~LaSgs~DgsIrlWd~~t~~-------------------L~gH~~sVtsVaFSp-DG~~LASgs~DGtVrVWDl~t 138 (767)
..++++++|..|+.|-+||++... -.+|+-.|.++.|-| |...+.+++.|+++||||..+
T Consensus 54 tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnT 133 (397)
T KOG4283|consen 54 TEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNT 133 (397)
T ss_pred ccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeeccc
Confidence 578999999999999999997531 237888999999999 888999999999999999999
Q ss_pred CeEEEEEccCCCCcEEEEEccCC--CcEEEEEeCCCeEEEEECCCCeEEEee-cCCCCeEEEEEcCCCCE-EEEEECCc-
Q 004217 139 GSCLKVLHGHRRTPWVVRFHPLN--PTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGEL-LAVASGHK- 213 (767)
Q Consensus 139 g~~l~~L~gH~~~V~sLafsP~d--g~lLaSgS~DGtVrIWDl~tg~~i~~l-~h~~~VtsVafSPdG~~-LAsgSdd~- 213 (767)
.+....|+ -.+.|++-+|+|.. .-++++|..|-.|++.|+.+|.+.+++ +|...|.++.|+|...+ |++|+.|+
T Consensus 134 lQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~ 212 (397)
T KOG4283|consen 134 LQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGA 212 (397)
T ss_pred ceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCce
Confidence 98888876 56789999999843 347888889999999999999999986 59999999999999885 66777555
Q ss_pred EEEEEcCCCc-c---------ccC--CeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217 214 LYIWRYNMRE-E---------TSS--PRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (767)
Q Consensus 214 V~VWDl~t~~-~---------~~~--~~~l~~h~~~VtsVaFSPDG~~LlaSgs 255 (767)
|++||++... . ... ...-..|.+.|+.++|+.|+.++++.+-
T Consensus 213 irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gt 266 (397)
T KOG4283|consen 213 IRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGT 266 (397)
T ss_pred EEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccC
Confidence 9999998651 1 111 1123467889999999999998887765
No 122
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=5.6e-13 Score=140.37 Aligned_cols=189 Identities=14% Similarity=0.167 Sum_probs=145.2
Q ss_pred EEEEcCCCEEEEEeC--CCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccC
Q 004217 75 EAGRDARRGLASWVE--AESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGH 148 (767)
Q Consensus 75 vA~sd~g~~LaSgs~--DgsIrlWd~~t~~----L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH 148 (767)
..+......++..+. |.+||..++.+.+ +.||...|+.++.+|-+..+++++.|++|++||++..++...+.--
T Consensus 62 ~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~ 141 (311)
T KOG1446|consen 62 ACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLS 141 (311)
T ss_pred EEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecC
Confidence 334445555555554 8899999998874 7899999999999998899999999999999999998888877644
Q ss_pred CCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCC--eEEEeec----CCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCC
Q 004217 149 RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTA--ECIGSRD----FYRPIASIAFHASGELLAVASGHK-LYIWRYNM 221 (767)
Q Consensus 149 ~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg--~~i~~l~----h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t 221 (767)
..+| ++|.| .+-++|.+...+.|++||++.- .+..++. .....+.+.|+|||++|+.+..+. +++.|.-.
T Consensus 142 ~~pi--~AfDp-~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~ 218 (311)
T KOG1446|consen 142 GRPI--AAFDP-EGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFD 218 (311)
T ss_pred CCcc--eeECC-CCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccC
Confidence 4444 78999 8899999988889999999963 3444432 456789999999999988888666 99999988
Q ss_pred CccccCCeEEecCCC---CeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEe
Q 004217 222 REETSSPRIVLRTRR---SLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLA 269 (767)
Q Consensus 222 ~~~~~~~~~l~~h~~---~VtsVaFSPDG~~LlaSgs-----vwdl~s~~~~~~l~ 269 (767)
+.... .+..+.. ---+.+|+||+++++.+.. +|++.++.....+.
T Consensus 219 G~~~~---tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~ 271 (311)
T KOG1446|consen 219 GTVKS---TFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLR 271 (311)
T ss_pred CcEee---eEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEec
Confidence 88544 3444322 2268889999998887765 77776555443333
No 123
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.55 E-value=1.5e-12 Score=136.81 Aligned_cols=174 Identities=17% Similarity=0.214 Sum_probs=138.0
Q ss_pred EEEEcCCCEEEEEeCCCeEEEEeCCCCCC---CCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCC
Q 004217 75 EAGRDARRGLASWVEAESLHHLRPKYCPL---SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRT 151 (767)
Q Consensus 75 vA~sd~g~~LaSgs~DgsIrlWd~~t~~L---~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~ 151 (767)
+.+.+.+..|+..+.||++++|+.....+ ..|..++.+++|.+ ...+++|+-||.|+++|+.+++. ..+..|...
T Consensus 19 v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~-~~igth~~~ 96 (323)
T KOG1036|consen 19 VKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNE-DQIGTHDEG 96 (323)
T ss_pred EEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccC-CceEEEeccCceEEEEEecCCcc-eeeccCCCc
Confidence 44446777777788999999999987643 37999999999996 56889999999999999998874 445679999
Q ss_pred cEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccCCeE
Q 004217 152 PWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRI 230 (767)
Q Consensus 152 V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~ 230 (767)
|.+|.+++ ..+.+++|+.|++|++||.+.......+.....|.++.. .|..|++|..+. +.+||+++..... ...
T Consensus 97 i~ci~~~~-~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~-q~r 172 (323)
T KOG1036|consen 97 IRCIEYSY-EVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEPF-QRR 172 (323)
T ss_pred eEEEEeec-cCCeEEEcccCccEEEEeccccccccccccCceEEEEec--cCCEEEEeecCceEEEEEcccccchh-hhc
Confidence 99999999 888999999999999999998777777777788988765 466777876555 9999999876532 112
Q ss_pred EecCCCCeEEEEEccCCCeEEEEE
Q 004217 231 VLRTRRSLRAVHFHPHAAPLLLTA 254 (767)
Q Consensus 231 l~~h~~~VtsVaFSPDG~~LlaSg 254 (767)
...-+-.+++|++-|++.-+++++
T Consensus 173 eS~lkyqtR~v~~~pn~eGy~~sS 196 (323)
T KOG1036|consen 173 ESSLKYQTRCVALVPNGEGYVVSS 196 (323)
T ss_pred cccceeEEEEEEEecCCCceEEEe
Confidence 233456788899888766555543
No 124
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.55 E-value=1.3e-13 Score=148.63 Aligned_cols=181 Identities=22% Similarity=0.303 Sum_probs=142.6
Q ss_pred EEEEcCCC-EEEEEeCCCeEEEEeCCCC-------------CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECC---
Q 004217 75 EAGRDARR-GLASWVEAESLHHLRPKYC-------------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQ--- 137 (767)
Q Consensus 75 vA~sd~g~-~LaSgs~DgsIrlWd~~t~-------------~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~--- 137 (767)
+.+..+.. .+++++.|..|++|..... .|..|...|+++.|+|+|.+||+|+.+|.|.+|-..
T Consensus 19 ~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~ 98 (434)
T KOG1009|consen 19 VDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVR 98 (434)
T ss_pred EEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcC
Confidence 33433433 9999999999999998653 367899999999999999999999999999999765
Q ss_pred -----C--------CeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEee-cCCCCeEEEEEcCCC
Q 004217 138 -----T--------GSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASG 203 (767)
Q Consensus 138 -----t--------g~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l-~h~~~VtsVafSPdG 203 (767)
+ ....+.+.+|...|+.++|+| +++++++++.|+++++||+..|+....+ +|...+..++|+|.+
T Consensus 99 ~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~ 177 (434)
T KOG1009|consen 99 IFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLN 177 (434)
T ss_pred CccccchhhhCccceEEEEEecccccchhhhhccC-CCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhh
Confidence 2 123466789999999999999 9999999999999999999999999886 488999999999999
Q ss_pred CEEEEEECCc-EEEEEcCCCccccCCe----------------EEecC----CCCeEEEEEccCCCeEEEEEee
Q 004217 204 ELLAVASGHK-LYIWRYNMREETSSPR----------------IVLRT----RRSLRAVHFHPHAAPLLLTAEV 256 (767)
Q Consensus 204 ~~LAsgSdd~-V~VWDl~t~~~~~~~~----------------~l~~h----~~~VtsVaFSPDG~~LlaSgsv 256 (767)
+++++-+.++ .+++++.....+.... ...-| ..-.+.++|+|||..+++-++.
T Consensus 178 qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~ 251 (434)
T KOG1009|consen 178 QYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGL 251 (434)
T ss_pred hhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccce
Confidence 9999888665 6666655443222110 01112 1235678899999988775553
No 125
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.54 E-value=2.1e-13 Score=143.35 Aligned_cols=151 Identities=25% Similarity=0.377 Sum_probs=126.4
Q ss_pred CCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCc--EEEEEeCCCeEEEEECC
Q 004217 103 LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPT--IIASGSLDHEVRLWNAS 180 (767)
Q Consensus 103 L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~--lLaSgS~DGtVrIWDl~ 180 (767)
+..|.++|++++.+ +.++|+|+.|.+|+|||+.+...+..+-.|.+.|+++.|.+ ... .|++|+.||.|.+|+..
T Consensus 39 ~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~-~~S~shLlS~sdDG~i~iw~~~ 115 (362)
T KOG0294|consen 39 FSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYP-PLSKSHLLSGSDDGHIIIWRVG 115 (362)
T ss_pred ccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecC-CcchhheeeecCCCcEEEEEcC
Confidence 46899999999997 89999999999999999999999999999999999999987 443 89999999999999999
Q ss_pred CCeEEEeec-CCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe---
Q 004217 181 TAECIGSRD-FYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE--- 255 (767)
Q Consensus 181 tg~~i~~l~-h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs--- 255 (767)
..+++..+. |...|+.++.+|.|++-++-++|+ +++||+-.++... ...-...-+.|.|+|.|.+++..+.
T Consensus 116 ~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~----v~~L~~~at~v~w~~~Gd~F~v~~~~~i 191 (362)
T KOG0294|consen 116 SWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAF----VLNLKNKATLVSWSPQGDHFVVSGRNKI 191 (362)
T ss_pred CeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccce----eeccCCcceeeEEcCCCCEEEEEeccEE
Confidence 999998875 888899999999999766666555 9999998876533 2222233345999999998887765
Q ss_pred -eCCcC
Q 004217 256 -VNDLD 260 (767)
Q Consensus 256 -vwdl~ 260 (767)
+|.++
T Consensus 192 ~i~q~d 197 (362)
T KOG0294|consen 192 DIYQLD 197 (362)
T ss_pred EEEecc
Confidence 55544
No 126
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.54 E-value=1.2e-13 Score=156.70 Aligned_cols=171 Identities=19% Similarity=0.212 Sum_probs=141.1
Q ss_pred eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC--CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCC
Q 004217 72 QIFEAGRDARRGLASWVEAESLHHLRPKYC--PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHR 149 (767)
Q Consensus 72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~--~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~ 149 (767)
+.+..+..++. +++|+.|.++++|..... .+.+|+..|+++++-|++ .+++|+.|.+||+|.- ++.+++|.||+
T Consensus 104 VC~ls~~~~~~-~iSgSWD~TakvW~~~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHt 179 (745)
T KOG0301|consen 104 VCSLSIGEDGT-LISGSWDSTAKVWRIGELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHT 179 (745)
T ss_pred eeeeecCCcCc-eEecccccceEEecchhhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--Cchhhhhccch
Confidence 33344444444 999999999999998765 588999999999999987 8899999999999974 78899999999
Q ss_pred CCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEe-ecCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccC
Q 004217 150 RTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-RDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSS 227 (767)
Q Consensus 150 ~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~-l~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~ 227 (767)
+-|..+++-+ ...|+|++.||.|++||+ +++++.. .+|...|++++...++..+++++.|+ ++||+.. ...+
T Consensus 180 D~VRgL~vl~--~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q- 253 (745)
T KOG0301|consen 180 DCVRGLAVLD--DSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQ- 253 (745)
T ss_pred hheeeeEEec--CCCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEE-
Confidence 9999999987 557999999999999999 5565555 67999999999777888888888766 9999876 2222
Q ss_pred CeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217 228 PRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (767)
Q Consensus 228 ~~~l~~h~~~VtsVaFSPDG~~LlaSgs 255 (767)
.+.-....|+++.+-++|. ++++++
T Consensus 254 --~I~lPttsiWsa~~L~NgD-Ivvg~S 278 (745)
T KOG0301|consen 254 --VITLPTTSIWSAKVLLNGD-IVVGGS 278 (745)
T ss_pred --EEecCccceEEEEEeeCCC-EEEecc
Confidence 3333455899999999999 666666
No 127
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.54 E-value=6.4e-14 Score=143.07 Aligned_cols=182 Identities=16% Similarity=0.182 Sum_probs=146.6
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCCC------CCCCCCCeEEEEECC--CCCeEEEEeCCCeEEEEECCCC---eEEEEEcc
Q 004217 79 DARRGLASWVEAESLHHLRPKYCP------LSPPPRSTIAAAFSP--DGKTLASTHGDHTVKIIDCQTG---SCLKVLHG 147 (767)
Q Consensus 79 d~g~~LaSgs~DgsIrlWd~~t~~------L~gH~~sVtsVaFSp--DG~~LASgs~DGtVrVWDl~tg---~~l~~L~g 147 (767)
.-|..|++++.|++|.+|.-..++ ...|..+|++++|.| -|-.|++++.||.|.|.+.++. ...+....
T Consensus 68 k~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~a 147 (299)
T KOG1332|consen 68 KFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFA 147 (299)
T ss_pred ccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhc
Confidence 368999999999999999998873 558999999999999 5678999999999999998754 22345578
Q ss_pred CCCCcEEEEEccCC--C-----------cEEEEEeCCCeEEEEECCCCeEEEe--e-cCCCCeEEEEEcCCC----CEEE
Q 004217 148 HRRTPWVVRFHPLN--P-----------TIIASGSLDHEVRLWNASTAECIGS--R-DFYRPIASIAFHASG----ELLA 207 (767)
Q Consensus 148 H~~~V~sLafsP~d--g-----------~lLaSgS~DGtVrIWDl~tg~~i~~--l-~h~~~VtsVafSPdG----~~LA 207 (767)
|.-.|++++|.|.. + +.|+||+.|+.|+||+..+++-+.. + +|.+.|+.++|.|.- .+||
T Consensus 148 H~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iA 227 (299)
T KOG1332|consen 148 HEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIA 227 (299)
T ss_pred cccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeE
Confidence 99999999999931 2 5699999999999999998743332 3 589999999999965 3799
Q ss_pred EEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCCcC
Q 004217 208 VASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLD 260 (767)
Q Consensus 208 sgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgsvwdl~ 260 (767)
+++.|+ |.||-.+......+...+......++.+.||..|+.|+++++..++.
T Consensus 228 S~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvt 281 (299)
T KOG1332|consen 228 SCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVT 281 (299)
T ss_pred EecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEE
Confidence 999666 99998875434444455555678899999999999888888755443
No 128
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.54 E-value=9.5e-14 Score=157.05 Aligned_cols=192 Identities=18% Similarity=0.244 Sum_probs=161.1
Q ss_pred eecCCcceEEEEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECC---CCCeEEEEeCCCeEEEEECC
Q 004217 65 KCSGSFSQIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSP---DGKTLASTHGDHTVKIIDCQ 137 (767)
Q Consensus 65 ~~~~s~s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSp---DG~~LASgs~DGtVrVWDl~ 137 (767)
.|...+...+++++.+++.|++|...|.|+++++..- .+..|...|.|+.||. ..++||+++.|..|.|||+.
T Consensus 455 ~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~ 534 (1080)
T KOG1408|consen 455 TCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVK 534 (1080)
T ss_pred hcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecc
Confidence 3445677999999999999999999999999999754 5779999999999997 46789999999999999985
Q ss_pred CC-eEEEEEccCCCCcEEEEE-------------------------------------------------ccCCCcEEEE
Q 004217 138 TG-SCLKVLHGHRRTPWVVRF-------------------------------------------------HPLNPTIIAS 167 (767)
Q Consensus 138 tg-~~l~~L~gH~~~V~sLaf-------------------------------------------------sP~dg~lLaS 167 (767)
.. ..+.++.+|...|+++.| .| ..+++++
T Consensus 535 rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp-~~k~v~t 613 (1080)
T KOG1408|consen 535 RNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDP-TSKLVVT 613 (1080)
T ss_pred cccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCC-CcceEEE
Confidence 43 234455555555555555 44 5578999
Q ss_pred EeCCCeEEEEECCCCeEEEeec----CCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEE
Q 004217 168 GSLDHEVRLWNASTAECIGSRD----FYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVH 242 (767)
Q Consensus 168 gS~DGtVrIWDl~tg~~i~~l~----h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVa 242 (767)
++.|..|+|||+.+++.++.++ |.+..-.+..+|.|.|||+...|+ +.++|+-+++.+. ...+|...|+.+.
T Consensus 614 ~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA---~m~GHsE~VTG~k 690 (1080)
T KOG1408|consen 614 VCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVA---QMTGHSEAVTGVK 690 (1080)
T ss_pred EecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhh---hhcCcchheeeee
Confidence 9999999999999999999875 567777899999999999998776 9999999999766 7889999999999
Q ss_pred EccCCCeEEEEEe-----eCCcC
Q 004217 243 FHPHAAPLLLTAE-----VNDLD 260 (767)
Q Consensus 243 FSPDG~~LlaSgs-----vwdl~ 260 (767)
|.+|-+.|+..++ +|.+.
T Consensus 691 F~nDCkHlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 691 FLNDCKHLISVSGDGCIFVWKLP 713 (1080)
T ss_pred ecccchhheeecCCceEEEEECc
Confidence 9999999988766 66554
No 129
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.52 E-value=3.9e-13 Score=156.33 Aligned_cols=174 Identities=18% Similarity=0.255 Sum_probs=144.4
Q ss_pred ceEEEEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEc
Q 004217 71 SQIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH 146 (767)
Q Consensus 71 s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~ 146 (767)
....+++..+|..++.|+.|-.|++-+.... .+.+|.++|.++.|+|.+++||+.+.||.|+|||++++.+...+.
T Consensus 98 p~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~ 177 (933)
T KOG1274|consen 98 PIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLT 177 (933)
T ss_pred cceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcc
Confidence 4667778889999999999999999998765 588999999999999999999999999999999999998776664
Q ss_pred cC--------CCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec---CCCCeEEEEEcCCCCEEEEEEC-CcE
Q 004217 147 GH--------RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD---FYRPIASIAFHASGELLAVASG-HKL 214 (767)
Q Consensus 147 gH--------~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~---h~~~VtsVafSPdG~~LAsgSd-d~V 214 (767)
+- ...+..++|+| ++..|+....|++|++|+..+.+....+. +...+.++.|+|+|+|||+++- +.|
T Consensus 178 ~v~k~n~~~~s~i~~~~aW~P-k~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I 256 (933)
T KOG1274|consen 178 GVDKDNEFILSRICTRLAWHP-KGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQI 256 (933)
T ss_pred cCCccccccccceeeeeeecC-CCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcE
Confidence 32 34567799999 66666677789999999999988877753 3445899999999999999994 559
Q ss_pred EEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEE
Q 004217 215 YIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLL 252 (767)
Q Consensus 215 ~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~Lla 252 (767)
.|||+++... ......|.+++|.|+...+-.
T Consensus 257 ~vWnv~t~~~-------~~~~~~Vc~~aw~p~~n~it~ 287 (933)
T KOG1274|consen 257 LVWNVDTHER-------HEFKRAVCCEAWKPNANAITL 287 (933)
T ss_pred EEEecccchh-------ccccceeEEEecCCCCCeeEE
Confidence 9999998321 223568999999999885543
No 130
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.51 E-value=3.4e-13 Score=155.37 Aligned_cols=180 Identities=13% Similarity=0.094 Sum_probs=157.6
Q ss_pred cceEEEEEEcCCCEEEEEeCCCeEEEEeCCCC----CC---CCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEE
Q 004217 70 FSQIFEAGRDARRGLASWVEAESLHHLRPKYC----PL---SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCL 142 (767)
Q Consensus 70 ~s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L---~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l 142 (767)
...++++.+.-|.+.+.|...|.|-+++++++ .+ ..|.++|++++...-++.+++++.+|.++.||+.+...+
T Consensus 449 ~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~ 528 (910)
T KOG1539|consen 449 INATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLK 528 (910)
T ss_pred cceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCccee
Confidence 34778888889999999999999999999987 23 589999999999999999999999999999999988877
Q ss_pred EEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec-CCCCeEEEEEcCCCCEEEEEECCc-EEEEEcC
Q 004217 143 KVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGHK-LYIWRYN 220 (767)
Q Consensus 143 ~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~-h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~ 220 (767)
..++ -...+.++..+. ...+++.+..|-.|+++|+.+.+.++.+. |...|++++|||||++|++++-|+ |++||+.
T Consensus 529 ~~l~-l~~~~~~iv~hr-~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlp 606 (910)
T KOG1539|consen 529 KSLR-LGSSITGIVYHR-VSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLP 606 (910)
T ss_pred eeec-cCCCcceeeeee-hhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEecc
Confidence 7775 345678888888 88899999999999999999999999875 999999999999999999999655 9999999
Q ss_pred CCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217 221 MREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (767)
Q Consensus 221 t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs 255 (767)
++..+. ...-..++.++.|||+|.+|+++-.
T Consensus 607 t~~lID----~~~vd~~~~sls~SPngD~LAT~Hv 637 (910)
T KOG1539|consen 607 TGTLID----GLLVDSPCTSLSFSPNGDFLATVHV 637 (910)
T ss_pred Ccceee----eEecCCcceeeEECCCCCEEEEEEe
Confidence 998755 3345678999999999998777653
No 131
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.51 E-value=3.6e-12 Score=132.89 Aligned_cols=191 Identities=17% Similarity=0.154 Sum_probs=136.4
Q ss_pred EEEEEEcCCCEEEE-EeCCCeEEEEeCCCCCCC---CCCCCeEEEEECCCCCeEEEEeCCC-eEEEEECCCCeEEEEEcc
Q 004217 73 IFEAGRDARRGLAS-WVEAESLHHLRPKYCPLS---PPPRSTIAAAFSPDGKTLASTHGDH-TVKIIDCQTGSCLKVLHG 147 (767)
Q Consensus 73 ~~vA~sd~g~~LaS-gs~DgsIrlWd~~t~~L~---gH~~sVtsVaFSpDG~~LASgs~DG-tVrVWDl~tg~~l~~L~g 147 (767)
..+++..+++.++. ...++.|++||+.+.+.. .+...+.+++|+|||++++++..++ .+.+||..+++.+..+..
T Consensus 76 ~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~ 155 (300)
T TIGR03866 76 ELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV 155 (300)
T ss_pred cEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc
Confidence 34556667776654 456899999999875321 2234578899999999999988765 577889998887665532
Q ss_pred CCCCcEEEEEccCCCcEE-EEEeCCCeEEEEECCCCeEEEeecCC--------CCeEEEEEcCCCCEEEEEE--CCcEEE
Q 004217 148 HRRTPWVVRFHPLNPTII-ASGSLDHEVRLWNASTAECIGSRDFY--------RPIASIAFHASGELLAVAS--GHKLYI 216 (767)
Q Consensus 148 H~~~V~sLafsP~dg~lL-aSgS~DGtVrIWDl~tg~~i~~l~h~--------~~VtsVafSPdG~~LAsgS--dd~V~V 216 (767)
...+..+.|+| +++++ +++..++.|++||+.+++.+..+... .....++|+|+|++++++. ++.|.+
T Consensus 156 -~~~~~~~~~s~-dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v 233 (300)
T TIGR03866 156 -DQRPRFAEFTA-DGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAV 233 (300)
T ss_pred -CCCccEEEECC-CCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEE
Confidence 33467899999 77766 55557999999999999877664311 1234688999999765543 455999
Q ss_pred EEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe------eCCcCCCCcceeEe
Q 004217 217 WRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE------VNDLDSSESSLTLA 269 (767)
Q Consensus 217 WDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs------vwdl~s~~~~~~l~ 269 (767)
||+++.+... ...+...+.+++|+|+|++|+++.. +||++.++....+.
T Consensus 234 ~d~~~~~~~~----~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~ 288 (300)
T TIGR03866 234 VDAKTYEVLD----YLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIK 288 (300)
T ss_pred EECCCCcEEE----EEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE
Confidence 9998776533 2234557899999999998877642 77777655544443
No 132
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.50 E-value=3.2e-13 Score=142.62 Aligned_cols=174 Identities=22% Similarity=0.311 Sum_probs=135.6
Q ss_pred CCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECC-CCCeEEEEeCCCeEEEEECCCCeEEEEE---ccCCCC
Q 004217 80 ARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCLKVL---HGHRRT 151 (767)
Q Consensus 80 ~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSp-DG~~LASgs~DGtVrVWDl~tg~~l~~L---~gH~~~ 151 (767)
..-.++.++.-|.|++.|..++ .+.+|...|+.+.|.| +.++|++++.|.+||+||+++..++..| .||.+.
T Consensus 104 ~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrde 183 (385)
T KOG1034|consen 104 GNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDE 183 (385)
T ss_pred CCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCc
Confidence 3567888889999999999876 4679999999999999 5578999999999999999999999887 579999
Q ss_pred cEEEEEccCCCcEEEEEeCCCeEEEEECCCCeE------E-------------------Eee----cCCC----------
Q 004217 152 PWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC------I-------------------GSR----DFYR---------- 192 (767)
Q Consensus 152 V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~------i-------------------~~l----~h~~---------- 192 (767)
|.++.|++ ++.+|+|++.|.++++|++...+. . -.+ -|..
T Consensus 184 VLSvD~~~-~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd 262 (385)
T KOG1034|consen 184 VLSVDFSL-DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGD 262 (385)
T ss_pred EEEEEEcC-CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhh
Confidence 99999999 889999999999999999973210 0 000 0000
Q ss_pred --------------------------------------------CeEE--EEEcCCCCEEEEEECC-cEEEEEcCCCccc
Q 004217 193 --------------------------------------------PIAS--IAFHASGELLAVASGH-KLYIWRYNMREET 225 (767)
Q Consensus 193 --------------------------------------------~Vts--VafSPdG~~LAsgSdd-~V~VWDl~t~~~~ 225 (767)
.|+- .+|+|.++.||.|... +|++||++..+..
T Consensus 263 ~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~ 342 (385)
T KOG1034|consen 263 FILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPP 342 (385)
T ss_pred heeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCc
Confidence 1112 2456667788888854 4999999987764
Q ss_pred cCCeEEec--CCCCeEEEEEccCCCeEEEEEe
Q 004217 226 SSPRIVLR--TRRSLRAVHFHPHAAPLLLTAE 255 (767)
Q Consensus 226 ~~~~~l~~--h~~~VtsVaFSPDG~~LlaSgs 255 (767)
. ...+.. ....|+..+|+.||..|++.++
T Consensus 343 ~-~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcd 373 (385)
T KOG1034|consen 343 K-CTTLTHSKSGSTVRQTSFSRDGSILVLVCD 373 (385)
T ss_pred c-CceEEeccccceeeeeeecccCcEEEEEeC
Confidence 3 222222 3567999999999998888776
No 133
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.49 E-value=1.1e-12 Score=137.82 Aligned_cols=170 Identities=13% Similarity=0.199 Sum_probs=134.8
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCC---CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEE
Q 004217 79 DARRGLASWVEAESLHHLRPKYC---PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVV 155 (767)
Q Consensus 79 d~g~~LaSgs~DgsIrlWd~~t~---~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sL 155 (767)
.+...+++|+-|+.|+++|+.++ ++..|...|.||.+++....+++|++|++|++||.+.......+. ....|.++
T Consensus 63 ~d~~~~~~G~~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~ 141 (323)
T KOG1036|consen 63 ADESTIVTGGLDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCM 141 (323)
T ss_pred cCCceEEEeccCceEEEEEecCCcceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc-cCceEEEE
Confidence 34678889999999999999987 578999999999999988899999999999999998755555554 23478887
Q ss_pred EEccCCCcEEEEEeCCCeEEEEECCCCeE---------------EEee--------------------c-----------
Q 004217 156 RFHPLNPTIIASGSLDHEVRLWNASTAEC---------------IGSR--------------------D----------- 189 (767)
Q Consensus 156 afsP~dg~lLaSgS~DGtVrIWDl~tg~~---------------i~~l--------------------~----------- 189 (767)
.. .++.|+.|..|..|.+||+++... +..+ .
T Consensus 142 ~v---~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkya 218 (323)
T KOG1036|consen 142 DV---SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYA 218 (323)
T ss_pred ec---cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhcee
Confidence 76 568888888999999999876321 1000 0
Q ss_pred ---CC---------CCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217 190 ---FY---------RPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (767)
Q Consensus 190 ---h~---------~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs 255 (767)
|. .+|++++|+|-...||+|+.|+ |.+||+.+.+.+. .+..-...|.+++|+.||..|+++.+
T Consensus 219 FkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~---q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 219 FKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLK---QLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred EEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhh---hccCCCCceEEEEeccCCCeEEEEec
Confidence 10 2588999999999999999777 9999999888765 44444678999999999997777665
No 134
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.48 E-value=1.3e-12 Score=136.96 Aligned_cols=184 Identities=13% Similarity=0.089 Sum_probs=141.5
Q ss_pred cceEEEEEEcCCCEEEEEeCCCeEEEEeCCCCC---CCCCCCCeEEEEECCCCC--eEEEEeCCCeEEEEECCCCeEEEE
Q 004217 70 FSQIFEAGRDARRGLASWVEAESLHHLRPKYCP---LSPPPRSTIAAAFSPDGK--TLASTHGDHTVKIIDCQTGSCLKV 144 (767)
Q Consensus 70 ~s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~---L~gH~~sVtsVaFSpDG~--~LASgs~DGtVrVWDl~tg~~l~~ 144 (767)
...+.+.++++|..+++++-|+.+++||+.+++ +..|.++|.++.|-+... .|++|++|++||.||.+...++.+
T Consensus 73 ~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t 152 (347)
T KOG0647|consen 73 GPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVAT 152 (347)
T ss_pred CCeEEEEEccCCceEEeeccCCceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeee
Confidence 347888899999999999999999999999984 568999999999988555 899999999999999976654433
Q ss_pred Ec-------------------------------------cC----CCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCe
Q 004217 145 LH-------------------------------------GH----RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAE 183 (767)
Q Consensus 145 L~-------------------------------------gH----~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~ 183 (767)
+. .+ +-.+.+|+..+ +.+.++.|+-.|.+-|..+..+.
T Consensus 153 ~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~-d~~~~alGsiEGrv~iq~id~~~ 231 (347)
T KOG0647|consen 153 LQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQ-DKDGFALGSIEGRVAIQYIDDPN 231 (347)
T ss_pred eeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEe-cCCceEeeeecceEEEEecCCCC
Confidence 32 11 22466777777 66666888888888888887753
Q ss_pred EEEe--ec-CC---------CCeEEEEEcCCCCEEEEEEC-CcEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeE
Q 004217 184 CIGS--RD-FY---------RPIASIAFHASGELLAVASG-HKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPL 250 (767)
Q Consensus 184 ~i~~--l~-h~---------~~VtsVafSPdG~~LAsgSd-d~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~L 250 (767)
.... ++ |. ..|++|+|+|....|++.+. +...+||-.....+. ....|..+|++..|+.+|.++
T Consensus 232 ~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk---~s~~~~qpItcc~fn~~G~if 308 (347)
T KOG0647|consen 232 PKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLK---TSETHPQPITCCSFNRNGSIF 308 (347)
T ss_pred ccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhh---ccCcCCCccceeEecCCCCEE
Confidence 3222 11 22 25788999998777777765 559999987776544 567789999999999999977
Q ss_pred EEEEe-eC
Q 004217 251 LLTAE-VN 257 (767)
Q Consensus 251 laSgs-vw 257 (767)
+.+.+ +|
T Consensus 309 aYA~gYDW 316 (347)
T KOG0647|consen 309 AYALGYDW 316 (347)
T ss_pred EEEeeccc
Confidence 66544 44
No 135
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.48 E-value=2e-12 Score=136.66 Aligned_cols=141 Identities=26% Similarity=0.422 Sum_probs=118.0
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCCCCCCCCCeEEEEECCC----CCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEE
Q 004217 80 ARRGLASWVEAESLHHLRPKYCPLSPPPRSTIAAAFSPD----GKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVV 155 (767)
Q Consensus 80 ~g~~LaSgs~DgsIrlWd~~t~~L~gH~~sVtsVaFSpD----G~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sL 155 (767)
+...++..-.|+-|++...... ..|......++|+-| ..+||.|+.-|.|+|.|+.++++...+.+|...|..+
T Consensus 64 ~rvtiy~c~~d~~ir~lq~y~D--~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINei 141 (385)
T KOG1034|consen 64 NRVTIYECPGDGGIRLLQSYAD--EDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEI 141 (385)
T ss_pred cEEEEEEECCccceeeeeeccC--CCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhh
Confidence 3344555555665555443222 257888889999874 3478899999999999999999999999999999999
Q ss_pred EEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec----CCCCeEEEEEcCCCCEEEEEECC-cEEEEEcCCC
Q 004217 156 RFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD----FYRPIASIAFHASGELLAVASGH-KLYIWRYNMR 222 (767)
Q Consensus 156 afsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~----h~~~VtsVafSPdG~~LAsgSdd-~V~VWDl~t~ 222 (767)
.|+|.+.++++++|.|.+||+||+++..|+..++ |.+.|.++.|+++|.+|++++-| .|++|++...
T Consensus 142 k~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~ 213 (385)
T KOG1034|consen 142 KFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVK 213 (385)
T ss_pred hcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChh
Confidence 9999888999999999999999999999999974 89999999999999999999855 5999999843
No 136
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.47 E-value=2e-12 Score=141.37 Aligned_cols=191 Identities=18% Similarity=0.144 Sum_probs=146.0
Q ss_pred eEEEEE--EcCCCEEEEEeCCCeEEEEeCCCC--------CCCCCCCCeEEEEECC-CCCeEEEEeCCCeEEEEECCCCe
Q 004217 72 QIFEAG--RDARRGLASWVEAESLHHLRPKYC--------PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGS 140 (767)
Q Consensus 72 ~~~vA~--sd~g~~LaSgs~DgsIrlWd~~t~--------~L~gH~~sVtsVaFSp-DG~~LASgs~DGtVrVWDl~tg~ 140 (767)
..++++ ......+++|...|.|-+||+.+. .+..|..+|.++.|+| +-..+++.+.||+|++-|++++.
T Consensus 189 it~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i 268 (498)
T KOG4328|consen 189 ITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNI 268 (498)
T ss_pred eEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchh
Confidence 344444 345688999999999999999532 2568999999999999 77889999999999999998764
Q ss_pred EE--EEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEe--ecCCCCeEEEEEcCCCC-EEEEEECC-cE
Q 004217 141 CL--KVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS--RDFYRPIASIAFHASGE-LLAVASGH-KL 214 (767)
Q Consensus 141 ~l--~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~--l~h~~~VtsVafSPdG~-~LAsgSdd-~V 214 (767)
.- ..+......+..+.|+. +...++.+..=|...+||++++..... .-|...|++++++|... +||+++-| .+
T Consensus 269 ~e~v~s~~~d~~~fs~~d~~~-e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~ 347 (498)
T KOG4328|consen 269 SEEVLSLDTDNIWFSSLDFSA-ESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTA 347 (498)
T ss_pred hHHHhhcCccceeeeeccccC-CCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcce
Confidence 33 33333455677888888 555555565556999999998765332 33778999999999876 67888854 59
Q ss_pred EEEEcCCCcccc-CCeEEecCCCCeEEEEEccCCCeEEEEEeeCCcCCCC
Q 004217 215 YIWRYNMREETS-SPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSE 263 (767)
Q Consensus 215 ~VWDl~t~~~~~-~~~~l~~h~~~VtsVaFSPDG~~LlaSgsvwdl~s~~ 263 (767)
+|||++.-.... +......|...|.+..|||++-.|++++.+..++.++
T Consensus 348 kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~d 397 (498)
T KOG4328|consen 348 KIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFD 397 (498)
T ss_pred eeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEee
Confidence 999998765433 2345678999999999999998899999866666433
No 137
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.47 E-value=7.8e-13 Score=138.83 Aligned_cols=193 Identities=18% Similarity=0.277 Sum_probs=152.3
Q ss_pred EEEEEeCCCeEEEEeCCCCCCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCC
Q 004217 83 GLASWVEAESLHHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNP 162 (767)
Q Consensus 83 ~LaSgs~DgsIrlWd~~t~~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg 162 (767)
++++.-.+++++.-- ...+.||++.|+.++.......+.+++.|.+.+||.+++|+|+.++.||.+.|++|.|++ .+
T Consensus 126 rivssFk~~t~~~~l--vre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~-s~ 202 (481)
T KOG0300|consen 126 RIVSSFKDGTVKFRL--VRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHN-SG 202 (481)
T ss_pred hheeeecCCceeEee--hhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEecc-cc
Confidence 344444555532211 125789999999999988778999999999999999999999999999999999999999 89
Q ss_pred cEEEEEeCCCeEEEEEC------CC--------Ce----------------------EE----Ee-ecCCCCeEEEEEcC
Q 004217 163 TIIASGSLDHEVRLWNA------ST--------AE----------------------CI----GS-RDFYRPIASIAFHA 201 (767)
Q Consensus 163 ~lLaSgS~DGtVrIWDl------~t--------g~----------------------~i----~~-l~h~~~VtsVafSP 201 (767)
.++++++.|++.+||.. .. ++ .+ .. .+|...|.+..|-.
T Consensus 203 ~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~ 282 (481)
T KOG0300|consen 203 LLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA 282 (481)
T ss_pred ceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhc
Confidence 99999999999999962 11 00 01 11 24677788889999
Q ss_pred CCCEEEEEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEeecCCCc
Q 004217 202 SGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYW 275 (767)
Q Consensus 202 dG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s~~~~~~l~t~sG~~ 275 (767)
.|+.+++++.|+ ..+||+++++.+. .+.+|....+.++-+|+.+.+++++. .||++ +....+..+.||.
T Consensus 283 gg~Q~vTaSWDRTAnlwDVEtge~v~---~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFR--eaI~sV~VFQGHt 357 (481)
T KOG0300|consen 283 GGQQMVTASWDRTANLWDVETGEVVN---ILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFR--EAIQSVAVFQGHT 357 (481)
T ss_pred CcceeeeeeccccceeeeeccCceec---cccCcchhccccccCCcceEEEEeccCceeEeccch--hhcceeeeecccc
Confidence 999999999776 9999999999766 78899999999999999986666554 78877 4566777788886
Q ss_pred cCCCCeEE
Q 004217 276 RYPPPVIC 283 (767)
Q Consensus 276 ~~p~~~v~ 283 (767)
.-...++|
T Consensus 358 dtVTS~vF 365 (481)
T KOG0300|consen 358 DTVTSVVF 365 (481)
T ss_pred cceeEEEE
Confidence 54433333
No 138
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.46 E-value=3.8e-12 Score=146.85 Aligned_cols=210 Identities=14% Similarity=0.141 Sum_probs=166.4
Q ss_pred EEEEeCCCeEEEEeCCCCC----------CCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEE---ccCCC
Q 004217 84 LASWVEAESLHHLRPKYCP----------LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL---HGHRR 150 (767)
Q Consensus 84 LaSgs~DgsIrlWd~~t~~----------L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L---~gH~~ 150 (767)
+..--.+...+.|+..... ++.....+++++.++-|++.+.|...|+|-+|++++|-....| ..|.+
T Consensus 415 ~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~ 494 (910)
T KOG1539|consen 415 ITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKG 494 (910)
T ss_pred eEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccC
Confidence 3334455667777776543 3344478999999999999999999999999999999888888 58999
Q ss_pred CcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccCCe
Q 004217 151 TPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPR 229 (767)
Q Consensus 151 ~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~ 229 (767)
+|+.++... -++.+++++.||-+++||..+...+..+.....+.++.++.....++.+.++- |+++|+.+.+.++
T Consensus 495 ~V~gla~D~-~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR--- 570 (910)
T KOG1539|consen 495 EVTGLAVDG-TNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVR--- 570 (910)
T ss_pred ceeEEEecC-CCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhH---
Confidence 999999988 77899999999999999999999888888889999999999888898888776 9999999988766
Q ss_pred EEecCCCCeEEEEEccCCCeEEEEEeeCCcCCCCcceeEeecCCCccCCCCeEEEecCCCCCCCceeeccCCCCCCceee
Q 004217 230 IVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRP 309 (767)
Q Consensus 230 ~l~~h~~~VtsVaFSPDG~~LlaSgsvwdl~s~~~~~~l~t~sG~~~~p~~~v~l~~~~Ssd~~~L~sg~~~~slpil~p 309 (767)
.+.+|.+.|++++|||||++|++++-+-.++. ||..++..+.. -....|+...
T Consensus 571 ~f~gh~nritd~~FS~DgrWlisasmD~tIr~-----------------------wDlpt~~lID~----~~vd~~~~sl 623 (910)
T KOG1539|consen 571 EFWGHGNRITDMTFSPDGRWLISASMDSTIRT-----------------------WDLPTGTLIDG----LLVDSPCTSL 623 (910)
T ss_pred HhhccccceeeeEeCCCCcEEEEeecCCcEEE-----------------------EeccCcceeee----EecCCcceee
Confidence 78899999999999999999988875222222 22111111100 0123467788
Q ss_pred EEecCCCEEEEeecC
Q 004217 310 SFVRDDERISLQHTE 324 (767)
Q Consensus 310 sFSpDg~rIva~~~~ 324 (767)
.|||+|..++..|-+
T Consensus 624 s~SPngD~LAT~Hvd 638 (910)
T KOG1539|consen 624 SFSPNGDFLATVHVD 638 (910)
T ss_pred EECCCCCEEEEEEec
Confidence 999999999985553
No 139
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.45 E-value=1e-12 Score=148.79 Aligned_cols=242 Identities=16% Similarity=0.143 Sum_probs=172.3
Q ss_pred ceeecccccceecCCcceEEEEEEcCCCEEEEEeCCCeEEEEeCCCCC---------C----------------------
Q 004217 55 SKRLLGETARKCSGSFSQIFEAGRDARRGLASWVEAESLHHLRPKYCP---------L---------------------- 103 (767)
Q Consensus 55 sk~~wd~~~~~~~~s~s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~---------L---------------------- 103 (767)
+.-+|+.....|+..... +..-....+++++.|++||+|++..+. +
T Consensus 369 S~ciW~Ve~~p~nv~~~~---~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~ 445 (1080)
T KOG1408|consen 369 SACIWDVENLPCNVHSPT---AACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASA 445 (1080)
T ss_pred cceeeeeccccccccCcc---cccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccC
Confidence 455677665555522211 111234558899999999999997630 0
Q ss_pred ----------CCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEcc--CCCcEEEEEeCC
Q 004217 104 ----------SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHP--LNPTIIASGSLD 171 (767)
Q Consensus 104 ----------~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP--~dg~lLaSgS~D 171 (767)
.+..-.+.+++.||||++||+|..-|+++|||+...+.+..+..|...|.|+.|+- ...++|++++.|
T Consensus 446 ~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrd 525 (1080)
T KOG1408|consen 446 GIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRD 525 (1080)
T ss_pred CcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCC
Confidence 02334689999999999999999999999999999888888999999999999984 135689999999
Q ss_pred CeEEEEECCCCe-EEEee-cC-------------------------------------------------CCCeEEEEEc
Q 004217 172 HEVRLWNASTAE-CIGSR-DF-------------------------------------------------YRPIASIAFH 200 (767)
Q Consensus 172 GtVrIWDl~tg~-~i~~l-~h-------------------------------------------------~~~VtsVafS 200 (767)
.-|++||+...- ++.++ +| +..++.++..
T Consensus 526 RlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vd 605 (1080)
T KOG1408|consen 526 RLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVD 605 (1080)
T ss_pred ceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeC
Confidence 999999985321 11110 01 1245678888
Q ss_pred CCCCEEEEEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEeecCCC
Q 004217 201 ASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGY 274 (767)
Q Consensus 201 PdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s~~~~~~l~t~sG~ 274 (767)
|..+++++++.|+ |+|||+..+++.+....-.+|.+....|...|.|.|++++++ +.|+.++++ +++..||
T Consensus 606 p~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEc---vA~m~GH 682 (1080)
T KOG1408|consen 606 PTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGEC---VAQMTGH 682 (1080)
T ss_pred CCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchh---hhhhcCc
Confidence 8899999999776 999999999987633344456778889999999999999988 445555555 4455677
Q ss_pred ccCCCCeEEEecCCCCCCCceeeccCCCCCCce
Q 004217 275 WRYPPPVICMAGAHSSSHPGLAEEVPLITPPFL 307 (767)
Q Consensus 275 ~~~p~~~v~l~~~~Ssd~~~L~sg~~~~slpil 307 (767)
........+ ..|+.||.+-..+.-+-+|
T Consensus 683 sE~VTG~kF-----~nDCkHlISvsgDgCIFvW 710 (1080)
T KOG1408|consen 683 SEAVTGVKF-----LNDCKHLISVSGDGCIFVW 710 (1080)
T ss_pred chheeeeee-----cccchhheeecCCceEEEE
Confidence 554433332 4467777766444443344
No 140
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.45 E-value=1.5e-12 Score=141.93 Aligned_cols=175 Identities=18% Similarity=0.206 Sum_probs=139.0
Q ss_pred EEEcCCCEEEEEeCCCeEEEEeCCCCC----CCCCCCCeEEEEECC-CCCeEEEEeCCCeEEEEECCCCeEE-EEEccCC
Q 004217 76 AGRDARRGLASWVEAESLHHLRPKYCP----LSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCL-KVLHGHR 149 (767)
Q Consensus 76 A~sd~g~~LaSgs~DgsIrlWd~~t~~----L~gH~~sVtsVaFSp-DG~~LASgs~DGtVrVWDl~tg~~l-~~L~gH~ 149 (767)
+.......|++|+.|++|++||+.+++ +.-|.+.|.+++|+| ....|++|+.|++|++.|++..... ..++ -.
T Consensus 251 ~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~ 329 (463)
T KOG0270|consen 251 WNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-FD 329 (463)
T ss_pred hccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE-ec
Confidence 344567889999999999999999983 567999999999999 7889999999999999999843222 2222 34
Q ss_pred CCcEEEEEccCCCcEEEEEeCCCeEEEEECCCC-eEEEeec-CCCCeEEEEEcCCCC-EEEEEECCc-EEEEEcCCCccc
Q 004217 150 RTPWVVRFHPLNPTIIASGSLDHEVRLWNASTA-ECIGSRD-FYRPIASIAFHASGE-LLAVASGHK-LYIWRYNMREET 225 (767)
Q Consensus 150 ~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg-~~i~~l~-h~~~VtsVafSPdG~-~LAsgSdd~-V~VWDl~t~~~~ 225 (767)
+.|-.+.|+|.....++++..||+|+-+|+|.. +++.++. |...|.++++++.-. ++++++.++ |++|++......
T Consensus 330 g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~ 409 (463)
T KOG0270|consen 330 GEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPK 409 (463)
T ss_pred cceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCc
Confidence 678999999978888999999999999999975 7888765 999999999998765 677777666 999998755432
Q ss_pred cCCeEEecC---CCCeEEEEEccCCCeEEEEEe
Q 004217 226 SSPRIVLRT---RRSLRAVHFHPHAAPLLLTAE 255 (767)
Q Consensus 226 ~~~~~l~~h---~~~VtsVaFSPDG~~LlaSgs 255 (767)
. ...| -+...|.++.|+-.++++.++
T Consensus 410 ~----v~~~~~~~~rl~c~~~~~~~a~~la~GG 438 (463)
T KOG0270|consen 410 S----VKEHSFKLGRLHCFALDPDVAFTLAFGG 438 (463)
T ss_pred c----cccccccccceeecccCCCcceEEEecC
Confidence 1 2222 233678889999887777665
No 141
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.45 E-value=1.1e-11 Score=130.11 Aligned_cols=271 Identities=17% Similarity=0.137 Sum_probs=178.1
Q ss_pred eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC--------CCCCCCCCeEEEEECC--CCCeEEEEeCCCeEEEEECCC---
Q 004217 72 QIFEAGRDARRGLASWVEAESLHHLRPKYC--------PLSPPPRSTIAAAFSP--DGKTLASTHGDHTVKIIDCQT--- 138 (767)
Q Consensus 72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~--------~L~gH~~sVtsVaFSp--DG~~LASgs~DGtVrVWDl~t--- 138 (767)
.-.+.+.-.|+++++++.|++|++||.+.. ..+.|.++|..|.|.+ -|+.+|+++.|++++||.-..
T Consensus 16 ihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~ 95 (361)
T KOG2445|consen 16 IHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSE 95 (361)
T ss_pred eeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeeccccc
Confidence 334556678999999999999999996543 3568999999999987 789999999999999997521
Q ss_pred ---C---eEEEEEccCCCCcEEEEEccCC-CcEEEEEeCCCeEEEEECCCCeE------EEeec--------CCCCeEEE
Q 004217 139 ---G---SCLKVLHGHRRTPWVVRFHPLN-PTIIASGSLDHEVRLWNASTAEC------IGSRD--------FYRPIASI 197 (767)
Q Consensus 139 ---g---~~l~~L~gH~~~V~sLafsP~d-g~lLaSgS~DGtVrIWDl~tg~~------i~~l~--------h~~~VtsV 197 (767)
+ ....++...+..|+.|.|.|.. +-.+++++.||.+|||+...... ..++. +.....|+
T Consensus 96 ~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~Cv 175 (361)
T KOG2445|consen 96 EAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCV 175 (361)
T ss_pred ccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEE
Confidence 1 2345667778899999999943 44789999999999998765332 22232 55678899
Q ss_pred EEcCCC---CEEEEEECC------cEEEEEcCCCc-cccCCeEEecCCCCeEEEEEccCCC---eEEEEEe-----eCCc
Q 004217 198 AFHASG---ELLAVASGH------KLYIWRYNMRE-ETSSPRIVLRTRRSLRAVHFHPHAA---PLLLTAE-----VNDL 259 (767)
Q Consensus 198 afSPdG---~~LAsgSdd------~V~VWDl~t~~-~~~~~~~l~~h~~~VtsVaFSPDG~---~LlaSgs-----vwdl 259 (767)
.|+|.. .+||+|++. +++||...... .......+.+|..+|++|+|.|+-- ++++++. +|++
T Consensus 176 sWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDgv~I~~v 255 (361)
T KOG2445|consen 176 SWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDGVRIFKV 255 (361)
T ss_pred eeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCcEEEEEE
Confidence 999753 489999976 69999876554 3333456678999999999999632 3444433 3444
Q ss_pred CCCCcceeEeecCCCccCCCCeEEEecCCCC-CCCceeeccCCCCCCceeeEEecCCCEEEEeecCCCCCCccccccccc
Q 004217 260 DSSESSLTLATSPGYWRYPPPVICMAGAHSS-SHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRS 338 (767)
Q Consensus 260 ~s~~~~~~l~t~sG~~~~p~~~v~l~~~~Ss-d~~~L~sg~~~~slpil~psFSpDg~rIva~~~~~d~Gs~~~~~~~~s 338 (767)
........ ..+. ....... -...+.....+...++|.+.|.--|..+.. +
T Consensus 256 ~~~~s~i~---~ee~---------~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsS-----------------t 306 (361)
T KOG2445|consen 256 KVARSAIE---EEEV---------LAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSS-----------------T 306 (361)
T ss_pred eeccchhh---hhcc---------cCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEee-----------------c
Confidence 32111000 0000 0000011 123344445567778898888877766664 1
Q ss_pred CCceeeeeccCCCCceeeeeccCCCCCCCCCCC
Q 004217 339 SSSVRLLTYSTPSGQYELVLSPIASNRSSPMPD 371 (767)
Q Consensus 339 s~~~~l~~~~~~~~q~~~~~~p~~p~~~~~~~~ 371 (767)
...+.+..|...=...-.+.+-+.-..+.+.++
T Consensus 307 GdDG~VRLWkany~n~~kC~sv~~~e~~~~~~~ 339 (361)
T KOG2445|consen 307 GDDGCVRLWKANYNNLWKCTSVLKAEGSVTKPD 339 (361)
T ss_pred CCCceeeehhhhhhhhheeeeEEeccCCCCCcc
Confidence 222346667664444445555544333333333
No 142
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.44 E-value=9.7e-12 Score=137.11 Aligned_cols=174 Identities=17% Similarity=0.250 Sum_probs=139.4
Q ss_pred eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCC--------
Q 004217 72 QIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTG-------- 139 (767)
Q Consensus 72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg-------- 139 (767)
++++.+. .+..+++|..+|.|.+|+..+. +...|.+.|.+++.-.+|.+|- |+.|..|..||-.-.
T Consensus 249 Vl~v~F~-engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elP 326 (626)
T KOG2106|consen 249 VLCVTFL-ENGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELP 326 (626)
T ss_pred EEEEEEc-CCCCEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEee-cCccceEEeccccccccccccCc
Confidence 5566664 4556778999999999999776 3449999999999999997665 999999999983100
Q ss_pred --------------e------------------EEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEe
Q 004217 140 --------------S------------------CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS 187 (767)
Q Consensus 140 --------------~------------------~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~ 187 (767)
. ......+|.+..+.++.+| ..+.+++++.|+.+++|+ ..+.+..
T Consensus 327 e~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hp-s~~q~~T~gqdk~v~lW~--~~k~~wt 403 (626)
T KOG2106|consen 327 EQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHP-SKNQLLTCGQDKHVRLWN--DHKLEWT 403 (626)
T ss_pred hhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCC-ChhheeeccCcceEEEcc--CCceeEE
Confidence 0 0011247889999999999 889999999999999999 6677777
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEEC-CcEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217 188 RDFYRPIASIAFHASGELLAVASG-HKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (767)
Q Consensus 188 l~h~~~VtsVafSPdG~~LAsgSd-d~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs 255 (767)
.....++.|+.|+|.| .+|.|.. +...+.|..+...+. .... ..+++.+.|+|+|.+|+.++.
T Consensus 404 ~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~---~~~d-~~~ls~v~ysp~G~~lAvgs~ 467 (626)
T KOG2106|consen 404 KIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVT---IHTD-NEQLSVVRYSPDGAFLAVGSH 467 (626)
T ss_pred EEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEE---EEec-CCceEEEEEcCCCCEEEEecC
Confidence 7778999999999999 8888884 559999999865443 3333 889999999999998777664
No 143
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.44 E-value=4e-12 Score=139.77 Aligned_cols=197 Identities=15% Similarity=0.205 Sum_probs=155.2
Q ss_pred Ccceeecccccceec-----CCcceEEEEEEcCCCEEEEEeCCCeEEEEeCCCCC----CCCC-CCCeEEEEECCCCC-e
Q 004217 53 HSSKRLLGETARKCS-----GSFSQIFEAGRDARRGLASWVEAESLHHLRPKYCP----LSPP-PRSTIAAAFSPDGK-T 121 (767)
Q Consensus 53 ~~sk~~wd~~~~~~~-----~s~s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~----L~gH-~~sVtsVaFSpDG~-~ 121 (767)
..-.++|+-...-+. ....+.++.......+|++++..|.|.+-.+.++. +... ...|.-+.|++..+ +
T Consensus 100 ~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~l 179 (673)
T KOG4378|consen 100 SGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFL 179 (673)
T ss_pred CceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeeccccccee
Confidence 334566765533332 12236666677788888888888888888887762 3322 34567899999555 5
Q ss_pred EEEEeCCCeEEEEECCCCeEEEE-EccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCCCCeEEEEEc
Q 004217 122 LASTHGDHTVKIIDCQTGSCLKV-LHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFH 200 (767)
Q Consensus 122 LASgs~DGtVrVWDl~tg~~l~~-L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~~VtsVafS 200 (767)
|.+++++|.|.+||+....++.. .+.|..+...|+|+|.+..+|++.+.|+.|.+||++..+....+....+...++|+
T Consensus 180 L~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~ 259 (673)
T KOG4378|consen 180 LSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFS 259 (673)
T ss_pred eEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCCcceeeec
Confidence 67789999999999987766544 47899999999999988999999999999999999988888888888899999999
Q ss_pred CCCCEEEEEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEE
Q 004217 201 ASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLL 252 (767)
Q Consensus 201 PdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~Lla 252 (767)
++|.+|+.|...+ |..||++..+. +......|...|++|+|-|.- .+++
T Consensus 260 ~~G~~L~aG~s~G~~i~YD~R~~k~--Pv~v~sah~~sVt~vafq~s~-tvlt 309 (673)
T KOG4378|consen 260 ECGTYLCAGNSKGELIAYDMRSTKA--PVAVRSAHDASVTRVAFQPSP-TVLT 309 (673)
T ss_pred CCceEEEeecCCceEEEEecccCCC--CceEeeecccceeEEEeeecc-eeee
Confidence 9999999998655 99999998775 446788899999999998875 3444
No 144
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.44 E-value=1.3e-12 Score=146.30 Aligned_cols=211 Identities=20% Similarity=0.148 Sum_probs=144.3
Q ss_pred CCCCCcceecccccccccCCCccCcceeecccccceecCCcceEEEEEEcCCCEEEEEeCCCeEEEEeCCC--------C
Q 004217 30 HRNSRLRNVFGLLAQREVAPRTKHSSKRLLGETARKCSGSFSQIFEAGRDARRGLASWVEAESLHHLRPKY--------C 101 (767)
Q Consensus 30 ~r~sk~rnVf~~~~kre~~~~~~~~sk~~wd~~~~~~~~s~s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t--------~ 101 (767)
++.|||+|--....++|.+..++.+..---..+.+..+ ..++++.-++. .+++-+.-+.. +
T Consensus 5 F~aSKfknt~p~vPk~E~~i~di~vG~~~~~~n~I~aS----~~flAFn~e~~-------G~~lgvlPl~~~Gr~~r~i~ 73 (1012)
T KOG1445|consen 5 FAASKFKNTTPKVPKKEETIFDIPVGNLSCTNNGIHAS----ADFLAFNIEGE-------GGKLGVLPLTAKGRRTRDIG 73 (1012)
T ss_pred cchhhcccCCCCCCchhhheeecccccccccCCCcccc----cceEEEeecCC-------CceEEEEeccccCccccccc
Confidence 57899999998888888887776554322222222222 33344432221 11222222221 2
Q ss_pred CCCCCCCCeEEEEECC-CCCeEEEEeCCCeEEEEECCCCeE--E---EEEccCC-CCcEEEEEccCCCcEEEEEeCCCeE
Q 004217 102 PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSC--L---KVLHGHR-RTPWVVRFHPLNPTIIASGSLDHEV 174 (767)
Q Consensus 102 ~L~gH~~sVtsVaFSp-DG~~LASgs~DGtVrVWDl~tg~~--l---~~L~gH~-~~V~sLafsP~dg~lLaSgS~DGtV 174 (767)
.+.+|.+.|+++.|+| +..+||+|+.|..|+||.+..|-. + ....+|. -.|.++.|||....++++ +..|++
T Consensus 74 ~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s-~a~g~v 152 (1012)
T KOG1445|consen 74 ILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILAS-GAHGSV 152 (1012)
T ss_pred eeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEe-ccCceE
Confidence 4678999999999999 777999999999999999975421 1 1223444 467899999955556665 468899
Q ss_pred EEEECCCCeEEEee-cCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccCCeEEecCCCC-eEEEEEccCCCeEE
Q 004217 175 RLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRS-LRAVHFHPHAAPLL 251 (767)
Q Consensus 175 rIWDl~tg~~i~~l-~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~-VtsVaFSPDG~~Ll 251 (767)
+|||+.+++.+..+ +|...|.+..|+.||.+|+++..|+ |+|||-+.... ......+|.+. -..+.|--+-..|+
T Consensus 153 ~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~--piQ~te~H~~~rdsRv~w~Gn~~rli 230 (1012)
T KOG1445|consen 153 YITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASME--PIQTTEGHGGMRDSRVLWAGNWERLI 230 (1012)
T ss_pred EEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCccCCC--ccccccccccchhheeeeccchhhhh
Confidence 99999999988775 5899999999999999999998777 99999987654 23355667443 23455655544555
Q ss_pred EEE
Q 004217 252 LTA 254 (767)
Q Consensus 252 aSg 254 (767)
++|
T Consensus 231 sTG 233 (1012)
T KOG1445|consen 231 STG 233 (1012)
T ss_pred hcc
Confidence 544
No 145
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=1.6e-12 Score=141.12 Aligned_cols=185 Identities=20% Similarity=0.157 Sum_probs=142.5
Q ss_pred eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEc-
Q 004217 72 QIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH- 146 (767)
Q Consensus 72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~- 146 (767)
..++++..++..|++|..||++|+|+.... .+..|...|.+++|||||++|++-+.| ..+||++++|..+....
T Consensus 147 ~k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 147 QKVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred ceEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 578888889999999999999999995443 356899999999999999999999999 99999999997766554
Q ss_pred -cCCCCcEEEEEccCCC-----cEEEEEeCCCeEEEEECCCCeE------EEeecCCCCeEEEEEcCCCCEEEEEECCc-
Q 004217 147 -GHRRTPWVVRFHPLNP-----TIIASGSLDHEVRLWNASTAEC------IGSRDFYRPIASIAFHASGELLAVASGHK- 213 (767)
Q Consensus 147 -gH~~~V~sLafsP~dg-----~lLaSgS~DGtVrIWDl~tg~~------i~~l~h~~~VtsVafSPdG~~LAsgSdd~- 213 (767)
.-......++|+- ++ .+++.-..-+.|+.||+..... .+.......|++++.+++|+++|.|+-++
T Consensus 226 ~~k~~~~~~cRF~~-d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGs 304 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSV-DNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGS 304 (398)
T ss_pred cccchhhhhceecc-cCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCc
Confidence 2223456778887 55 3334444556788877754322 11123456899999999999999999554
Q ss_pred EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCCcC
Q 004217 214 LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLD 260 (767)
Q Consensus 214 V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgsvwdl~ 260 (767)
|-|++..+-+... .....|...|+.|.|+||.++++..+..|...
T Consensus 305 Vai~~~~~lq~~~--~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~ 349 (398)
T KOG0771|consen 305 VAIYDAKSLQRLQ--YVKEAHLGFVTGLTFSPDSRYLASVSSDNEAA 349 (398)
T ss_pred EEEEEeceeeeeE--eehhhheeeeeeEEEcCCcCcccccccCCcee
Confidence 9999988777644 34567889999999999999888766655433
No 146
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.42 E-value=3.4e-12 Score=137.45 Aligned_cols=174 Identities=20% Similarity=0.240 Sum_probs=142.7
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCC-----------CCCCCCCCeEEEEECC-CCCeEEEEeCCCeEEEEECCCCeEEEEEc
Q 004217 79 DARRGLASWVEAESLHHLRPKYC-----------PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCLKVLH 146 (767)
Q Consensus 79 d~g~~LaSgs~DgsIrlWd~~t~-----------~L~gH~~sVtsVaFSp-DG~~LASgs~DGtVrVWDl~tg~~l~~L~ 146 (767)
-+...|++|++|.+|.+|++-.. .|.+|...|--++|+| -.+.|++++.|.+|.|||+.+|+.+-++.
T Consensus 92 fnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~ 171 (472)
T KOG0303|consen 92 FNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD 171 (472)
T ss_pred cCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC
Confidence 46788999999999999998653 3679999999999999 55789999999999999999999888887
Q ss_pred cCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEee-cCCC-CeEEEEEcCCCCEEEEEEC---Cc-EEEEEcC
Q 004217 147 GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYR-PIASIAFHASGELLAVASG---HK-LYIWRYN 220 (767)
Q Consensus 147 gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l-~h~~-~VtsVafSPdG~~LAsgSd---d~-V~VWDl~ 220 (767)
|.+.|+++.|+. ++.+|++.+.|+.|||||.++++.+..- .|.+ ....+.|-.+|.++.+|-. ++ +-+||..
T Consensus 172 -hpd~i~S~sfn~-dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~ 249 (472)
T KOG0303|consen 172 -HPDMVYSMSFNR-DGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPN 249 (472)
T ss_pred -CCCeEEEEEecc-CCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcc
Confidence 999999999999 9999999999999999999999999885 4543 3456678889996666642 33 9999987
Q ss_pred CCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217 221 MREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (767)
Q Consensus 221 t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs 255 (767)
..+... ........+.|.---|.+|.+.+...|+
T Consensus 250 nl~eP~-~~~elDtSnGvl~PFyD~dt~ivYl~GK 283 (472)
T KOG0303|consen 250 NLEEPI-ALQELDTSNGVLLPFYDPDTSIVYLCGK 283 (472)
T ss_pred cccCcc-eeEEeccCCceEEeeecCCCCEEEEEec
Confidence 665432 1223445677878888999987766665
No 147
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.41 E-value=2.3e-12 Score=141.65 Aligned_cols=186 Identities=17% Similarity=0.154 Sum_probs=149.3
Q ss_pred eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEcc
Q 004217 72 QIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHG 147 (767)
Q Consensus 72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~g 147 (767)
..|++......++++|+..+.|+|||++.. .+++|+..|+++.++-...+||+++..|.|.|..+.++.....|..
T Consensus 82 ~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~ 161 (673)
T KOG4378|consen 82 AFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTI 161 (673)
T ss_pred HHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceec
Confidence 344444455689999999999999999854 5889999999999999999999999999999999999987777764
Q ss_pred C-CCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEee--cCCCCeEEEEEcCCCC-EEEEEE-CCcEEEEEcCCC
Q 004217 148 H-RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR--DFYRPIASIAFHASGE-LLAVAS-GHKLYIWRYNMR 222 (767)
Q Consensus 148 H-~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l--~h~~~VtsVafSPdG~-~LAsgS-dd~V~VWDl~t~ 222 (767)
. ...|.-+.|+|....+|.+++.+|.|.+||+....++..+ .|..+...|+|+|... +|++-+ |.+|.+||.+..
T Consensus 162 ~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~ 241 (673)
T KOG4378|consen 162 DSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQ 241 (673)
T ss_pred CCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccc
Confidence 4 3456689999966678888999999999999987777664 4889999999999876 455555 555999999866
Q ss_pred ccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCcCC
Q 004217 223 EETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDS 261 (767)
Q Consensus 223 ~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s 261 (767)
.... ...-..+...|+|+++|.+|+++.+ .+|++.
T Consensus 242 ~s~~----~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~ 281 (673)
T KOG4378|consen 242 ASTD----RLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRS 281 (673)
T ss_pred cccc----eeeecCCcceeeecCCceEEEeecCCceEEEEeccc
Confidence 5433 2223458899999999998777654 445554
No 148
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.40 E-value=9.6e-11 Score=132.69 Aligned_cols=158 Identities=14% Similarity=0.171 Sum_probs=118.4
Q ss_pred CeEEEEeCCCC---CCCCCCCCeEEEEECCCCCeEEEEeC---CCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcE
Q 004217 91 ESLHHLRPKYC---PLSPPPRSTIAAAFSPDGKTLASTHG---DHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTI 164 (767)
Q Consensus 91 gsIrlWd~~t~---~L~gH~~sVtsVaFSpDG~~LASgs~---DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~l 164 (767)
..|.+||.... ++..|...+...+|+|||+.|+..+. +..|++||+.+++. ..+..+.+.+...+|+| +++.
T Consensus 182 ~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~-~~l~~~~g~~~~~~~SP-DG~~ 259 (435)
T PRK05137 182 KRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR-ELVGNFPGMTFAPRFSP-DGRK 259 (435)
T ss_pred eEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE-EEeecCCCcccCcEECC-CCCE
Confidence 36778887654 36678889999999999999988764 46899999998875 34555667778899999 6665
Q ss_pred E-EEEeCCCe--EEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEECC----cEEEEEcCCCccccCCeEEecCCCC
Q 004217 165 I-ASGSLDHE--VRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGH----KLYIWRYNMREETSSPRIVLRTRRS 237 (767)
Q Consensus 165 L-aSgS~DGt--VrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSdd----~V~VWDl~t~~~~~~~~~l~~h~~~ 237 (767)
| ++.+.++. |.+||+.+++......+........|+|||+.|+..++. .|++||+..++.. .+..+...
T Consensus 260 la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~----~lt~~~~~ 335 (435)
T PRK05137 260 VVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR----RISFGGGR 335 (435)
T ss_pred EEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE----EeecCCCc
Confidence 4 56666665 777799888776655555566789999999998887742 2888998765432 23334556
Q ss_pred eEEEEEccCCCeEEEEE
Q 004217 238 LRAVHFHPHAAPLLLTA 254 (767)
Q Consensus 238 VtsVaFSPDG~~LlaSg 254 (767)
+....|+|||++|+.+.
T Consensus 336 ~~~~~~SpdG~~ia~~~ 352 (435)
T PRK05137 336 YSTPVWSPRGDLIAFTK 352 (435)
T ss_pred ccCeEECCCCCEEEEEE
Confidence 67789999999888765
No 149
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.39 E-value=2.6e-11 Score=137.20 Aligned_cols=157 Identities=14% Similarity=0.185 Sum_probs=111.5
Q ss_pred CCeEEEEeCCCC---CCCCCCCCeEEEEECCCCCeEEEEeCC---CeEEEEECCCCeE--EEEEccCCCCcEEEEEccCC
Q 004217 90 AESLHHLRPKYC---PLSPPPRSTIAAAFSPDGKTLASTHGD---HTVKIIDCQTGSC--LKVLHGHRRTPWVVRFHPLN 161 (767)
Q Consensus 90 DgsIrlWd~~t~---~L~gH~~sVtsVaFSpDG~~LASgs~D---GtVrVWDl~tg~~--l~~L~gH~~~V~sLafsP~d 161 (767)
+..|.+||.... .+..|...+..++|||||++|+.++.+ ..|++||+.+++. +..+.+| ...++|+| +
T Consensus 183 ~~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSP-D 258 (429)
T PRK01742 183 PYEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSP-D 258 (429)
T ss_pred eEEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECC-C
Confidence 468999998654 356788889999999999999988754 4799999988753 3334444 34689999 7
Q ss_pred CcEEEEE-eCCCeEEEE--ECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEEC--CcEEEEEcCCCccccCCeEEecCCC
Q 004217 162 PTIIASG-SLDHEVRLW--NASTAECIGSRDFYRPIASIAFHASGELLAVASG--HKLYIWRYNMREETSSPRIVLRTRR 236 (767)
Q Consensus 162 g~lLaSg-S~DGtVrIW--Dl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSd--d~V~VWDl~t~~~~~~~~~l~~h~~ 236 (767)
++.|+.+ +.+|.+.|| |+.+++......+...+....|+|||+.|+..++ +...||+++...... ....+..
T Consensus 259 G~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~---~~l~~~~ 335 (429)
T PRK01742 259 GSRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGA---SLVGGRG 335 (429)
T ss_pred CCEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCe---EEecCCC
Confidence 7777665 468866555 7777766555556667888999999998887764 347777765432211 1223333
Q ss_pred CeEEEEEccCCCeEEEEEe
Q 004217 237 SLRAVHFHPHAAPLLLTAE 255 (767)
Q Consensus 237 ~VtsVaFSPDG~~LlaSgs 255 (767)
..+.|+|||+++++++.
T Consensus 336 --~~~~~SpDG~~ia~~~~ 352 (429)
T PRK01742 336 --YSAQISADGKTLVMING 352 (429)
T ss_pred --CCccCCCCCCEEEEEcC
Confidence 46789999998877654
No 150
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.39 E-value=3.8e-12 Score=137.56 Aligned_cols=145 Identities=22% Similarity=0.357 Sum_probs=120.7
Q ss_pred CCCeEEEEECCCCC-eEEEEeCCCeEEEEECCCC---------eEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEE
Q 004217 107 PRSTIAAAFSPDGK-TLASTHGDHTVKIIDCQTG---------SCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRL 176 (767)
Q Consensus 107 ~~sVtsVaFSpDG~-~LASgs~DGtVrVWDl~tg---------~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrI 176 (767)
..+|..+.|.++.. .|++|+.|..|+||-+..+ +.+..|..|...|+++.|+| ++++++||+.+|.|.+
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p-~gelLASg~D~g~v~l 91 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSP-DGELLASGGDGGEVFL 91 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcC-CcCeeeecCCCceEEE
Confidence 35799999999665 9999999999999988542 23456788999999999999 9999999999999999
Q ss_pred EECC--------C-----C---eEEEe-ecCCCCeEEEEEcCCCCEEEEEE-CCcEEEEEcCCCccccCCeEEecCCCCe
Q 004217 177 WNAS--------T-----A---ECIGS-RDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSL 238 (767)
Q Consensus 177 WDl~--------t-----g---~~i~~-l~h~~~VtsVafSPdG~~LAsgS-dd~V~VWDl~t~~~~~~~~~l~~h~~~V 238 (767)
|-.. + . ...+. ..|...|..++|+|+++++++++ ++.+++||+..+.... .+..|...|
T Consensus 92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~---~~~dh~~yv 168 (434)
T KOG1009|consen 92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLA---ILDDHEHYV 168 (434)
T ss_pred EEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEe---ecccccccc
Confidence 9765 2 1 11111 34889999999999999999999 5559999999998765 788899999
Q ss_pred EEEEEccCCCeEEEEEe
Q 004217 239 RAVHFHPHAAPLLLTAE 255 (767)
Q Consensus 239 tsVaFSPDG~~LlaSgs 255 (767)
..++|.|-++++++-+.
T Consensus 169 qgvawDpl~qyv~s~s~ 185 (434)
T KOG1009|consen 169 QGVAWDPLNQYVASKSS 185 (434)
T ss_pred ceeecchhhhhhhhhcc
Confidence 99999999998776544
No 151
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.39 E-value=9.3e-12 Score=136.23 Aligned_cols=182 Identities=13% Similarity=0.098 Sum_probs=147.1
Q ss_pred eEEEEEEcCCC-EEEEEeCCCeEEEEeCCCCC------CCCCC-CCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEE
Q 004217 72 QIFEAGRDARR-GLASWVEAESLHHLRPKYCP------LSPPP-RSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLK 143 (767)
Q Consensus 72 ~~~vA~sd~g~-~LaSgs~DgsIrlWd~~t~~------L~gH~-~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~ 143 (767)
.....+.++|. .+++++...-+..||+.+.+ +.++. ..+.....|+++++|+..+..|.|.|....+++.+.
T Consensus 260 i~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~ 339 (514)
T KOG2055|consen 260 IQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELIT 339 (514)
T ss_pred cceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhh
Confidence 33344556666 88889899999999998863 33444 467889999999999999999999999999999998
Q ss_pred EEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCCCCe--EEEEEcCCCCEEEEEECCc-EEEEEcC
Q 004217 144 VLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPI--ASIAFHASGELLAVASGHK-LYIWRYN 220 (767)
Q Consensus 144 ~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~~V--tsVafSPdG~~LAsgSdd~-V~VWDl~ 220 (767)
.++ -.+.|..+.|+. +++.|+.++.+|.|.+||++...+++.+...+.| ++++.+++|.|||+|++.+ |.|||.+
T Consensus 340 s~K-ieG~v~~~~fsS-dsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~ 417 (514)
T KOG2055|consen 340 SFK-IEGVVSDFTFSS-DSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGN 417 (514)
T ss_pred eee-eccEEeeEEEec-CCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccc
Confidence 887 467899999998 8898998899999999999999999998766666 4677789999999999877 9999976
Q ss_pred CCcc---ccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217 221 MREE---TSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (767)
Q Consensus 221 t~~~---~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs 255 (767)
+... .++...+..-...|++++|++|++.|+.++.
T Consensus 418 s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~ 455 (514)
T KOG2055|consen 418 SCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASR 455 (514)
T ss_pred hhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhh
Confidence 4322 2223344455778999999999996666554
No 152
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.38 E-value=5.2e-11 Score=135.31 Aligned_cols=188 Identities=15% Similarity=0.118 Sum_probs=151.4
Q ss_pred eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC-----CCCCC-CCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEE
Q 004217 72 QIFEAGRDARRGLASWVEAESLHHLRPKYC-----PLSPP-PRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL 145 (767)
Q Consensus 72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~-----~L~gH-~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L 145 (767)
.+++|.+.....|+.+-.++.|.+|++... .+.++ .+.|.+++|+ ++..|++.+.+|.|.-||+.+++.+..+
T Consensus 28 I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~ 106 (691)
T KOG2048|consen 28 IVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQKYNI 106 (691)
T ss_pred eEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCceeEEe
Confidence 778889889899999999999999999875 23444 5679999999 5667888999999999999999999999
Q ss_pred ccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEe--ec-CCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCC
Q 004217 146 HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS--RD-FYRPIASIAFHASGELLAVASGHK-LYIWRYNM 221 (767)
Q Consensus 146 ~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~--l~-h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t 221 (767)
..-.+.|++++.+| .+..++.|+.||.+..++...++.... +. ..+.|.+++|+|++..|+.|+.|+ |++||+..
T Consensus 107 d~~gg~IWsiai~p-~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~ 185 (691)
T KOG2048|consen 107 DSNGGAIWSIAINP-ENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKS 185 (691)
T ss_pred cCCCcceeEEEeCC-ccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCC
Confidence 98899999999999 888999999999888888888877655 33 458999999999999999999877 99999998
Q ss_pred CccccCCeEEe----c-CCCCeEEEEEccCCCeEEEEEe-----eCCcCCC
Q 004217 222 REETSSPRIVL----R-TRRSLRAVHFHPHAAPLLLTAE-----VNDLDSS 262 (767)
Q Consensus 222 ~~~~~~~~~l~----~-h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s~ 262 (767)
+.......... . -..-|++|.|-.|+. |+++-+ .||-..+
T Consensus 186 ~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~t-I~sgDS~G~V~FWd~~~g 235 (691)
T KOG2048|consen 186 GQTLHIITMQLDRLSKREPTIVWSVLFLRDST-IASGDSAGTVTFWDSIFG 235 (691)
T ss_pred CceEEEeeecccccccCCceEEEEEEEeecCc-EEEecCCceEEEEcccCc
Confidence 87654111111 1 233578999988876 554333 6665543
No 153
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.37 E-value=1.8e-11 Score=138.20 Aligned_cols=194 Identities=14% Similarity=0.168 Sum_probs=132.6
Q ss_pred EEcCCCEEEEEeCCCeEEEEeCCCCC------CCCCCCCeEEEEECC-CCCeEEEEeCCCeEEEEECCCCe---------
Q 004217 77 GRDARRGLASWVEAESLHHLRPKYCP------LSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGS--------- 140 (767)
Q Consensus 77 ~sd~g~~LaSgs~DgsIrlWd~~t~~------L~gH~~sVtsVaFSp-DG~~LASgs~DGtVrVWDl~tg~--------- 140 (767)
...+...|++.+.|.+++.||++..+ +.||.+.|.+++|.+ |...|++|+.||.|.|||++-..
T Consensus 108 wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~ 187 (720)
T KOG0321|consen 108 WAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDN 187 (720)
T ss_pred cCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhh
Confidence 33577889999999999999999863 669999999999999 66788999999999999984321
Q ss_pred ------------------EEEEEccCCCCcEE---EEEccCCCcEEEEEeC-CCeEEEEECCCCeEEEeec---------
Q 004217 141 ------------------CLKVLHGHRRTPWV---VRFHPLNPTIIASGSL-DHEVRLWNASTAECIGSRD--------- 189 (767)
Q Consensus 141 ------------------~l~~L~gH~~~V~s---LafsP~dg~lLaSgS~-DGtVrIWDl~tg~~i~~l~--------- 189 (767)
.++.-+.+...|.+ +-+.. |...|++++. |+.|++||+++.......+
T Consensus 188 ~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fk-De~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t 266 (720)
T KOG0321|consen 188 RIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFK-DESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPT 266 (720)
T ss_pred hhhccccCCCCCCchhhccccccccccCceeeeeEEEEEe-ccceeeeccCCCcceEEEeecccccccccCCCcccCccC
Confidence 11122234444544 44555 7889999887 9999999999866543321
Q ss_pred C---CCCeEEEEEcCCCCEE-EEEECCcEEEEEcCCCccccCCeEEecCCC--CeEEEEEccCCCeEEEEEe-----eCC
Q 004217 190 F---YRPIASIAFHASGELL-AVASGHKLYIWRYNMREETSSPRIVLRTRR--SLRAVHFHPHAAPLLLTAE-----VND 258 (767)
Q Consensus 190 h---~~~VtsVafSPdG~~L-AsgSdd~V~VWDl~t~~~~~~~~~l~~h~~--~VtsVaFSPDG~~LlaSgs-----vwd 258 (767)
+ ...+.++..+..|.+| |.+.|+.|++||+....... ...+.++.. --..-..+||+.+++.+.. +|.
T Consensus 267 ~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP-~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~ 345 (720)
T KOG0321|consen 267 HSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISP-VAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWV 345 (720)
T ss_pred cccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCc-hhhccCcccceeeeeeecCCCCceEeccCCCcceeeee
Confidence 2 2246677777778765 45557779999998765422 223333321 1223457899998877665 777
Q ss_pred cCCCCcceeEeecCCC
Q 004217 259 LDSSESSLTLATSPGY 274 (767)
Q Consensus 259 l~s~~~~~~l~t~sG~ 274 (767)
+...+. ......||
T Consensus 346 vs~~e~--~~~~l~Gh 359 (720)
T KOG0321|consen 346 VSSPEA--PPALLLGH 359 (720)
T ss_pred ecCccC--ChhhhhCc
Confidence 775332 33334454
No 154
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.37 E-value=4.2e-12 Score=141.70 Aligned_cols=196 Identities=14% Similarity=0.145 Sum_probs=151.4
Q ss_pred eeecccccceecCCcceEEEEEEcCCCEEEEEeCCCeEEEEeCCCC------------CCCCCCCCeEEEEECCCCCeEE
Q 004217 56 KRLLGETARKCSGSFSQIFEAGRDARRGLASWVEAESLHHLRPKYC------------PLSPPPRSTIAAAFSPDGKTLA 123 (767)
Q Consensus 56 k~~wd~~~~~~~~s~s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~------------~L~gH~~sVtsVaFSpDG~~LA 123 (767)
++.|.-...-..........++......|+++++|++|++|+++.. ++.+|.++|.|+++++++.+++
T Consensus 281 ~k~w~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~y 360 (577)
T KOG0642|consen 281 TKKWNIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCY 360 (577)
T ss_pred heecceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEE
Confidence 4445554322222223455566667788999999999999999321 3679999999999999999999
Q ss_pred EEeCCCeEEEEECCCC----------eEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEE--------
Q 004217 124 STHGDHTVKIIDCQTG----------SCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECI-------- 185 (767)
Q Consensus 124 Sgs~DGtVrVWDl~tg----------~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i-------- 185 (767)
+|+.||+|+.|++... .....|.||++.|+.+++|+ ..+.|++++.||+|++|+.......
T Consensus 361 sgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~-~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~ 439 (577)
T KOG0642|consen 361 SGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSS-TKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEH 439 (577)
T ss_pred eeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecc-cccceeeecCCceEEeeccCCcCccccCCcccc
Confidence 9999999999965321 23467889999999999999 7888999999999999987654330
Q ss_pred ------------------------------------Eeec--------CCCCeEEEEEcCCCCEEEEEECCc-EEEEEcC
Q 004217 186 ------------------------------------GSRD--------FYRPIASIAFHASGELLAVASGHK-LYIWRYN 220 (767)
Q Consensus 186 ------------------------------------~~l~--------h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~ 220 (767)
..++ ....+..+.++|.+.+.+++..++ |+++|..
T Consensus 440 g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~ 519 (577)
T KOG0642|consen 440 GYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNK 519 (577)
T ss_pred CCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccc
Confidence 0000 012355678889998888888776 9999999
Q ss_pred CCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217 221 MREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (767)
Q Consensus 221 t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs 255 (767)
+++.+. ....|...++++++.|+|-+|++...
T Consensus 520 ~~~~l~---s~~a~~~svtslai~~ng~~l~s~s~ 551 (577)
T KOG0642|consen 520 TGKILH---SMVAHKDSVTSLAIDPNGPYLMSGSH 551 (577)
T ss_pred ccccch---heeeccceecceeecCCCceEEeecC
Confidence 998765 67789999999999999998887665
No 155
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.36 E-value=1.5e-12 Score=149.71 Aligned_cols=185 Identities=16% Similarity=0.235 Sum_probs=142.3
Q ss_pred eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEcc
Q 004217 72 QIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHG 147 (767)
Q Consensus 72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~g 147 (767)
+.|.++...|.++++|+.|..+++|..++. .+.||.+.|+.++.+.+...+++++.|..|++|.+.++.++..+.|
T Consensus 193 Vyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrg 272 (1113)
T KOG0644|consen 193 VYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRG 272 (1113)
T ss_pred eeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhc
Confidence 456667778999999999999999998876 5779999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCe--------------EEEee--c---------------CCCCeEE
Q 004217 148 HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAE--------------CIGSR--D---------------FYRPIAS 196 (767)
Q Consensus 148 H~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~--------------~i~~l--~---------------h~~~Vts 196 (767)
|++.|++++|+| ..+.+.||++++||.+-.- .+..+ . .......
T Consensus 273 htgavtaiafsP-----~~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~ 347 (1113)
T KOG0644|consen 273 HTGAVTAIAFSP-----RASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQ 347 (1113)
T ss_pred cccceeeeccCc-----cccCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhH
Confidence 999999999999 3388899999999988110 00000 0 0011223
Q ss_pred EEEcCCCCEEEEEE------------CCcEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe------eCC
Q 004217 197 IAFHASGELLAVAS------------GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE------VND 258 (767)
Q Consensus 197 VafSPdG~~LAsgS------------dd~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs------vwd 258 (767)
++|...+-.+++.+ +..+++|++-++.... .+.+|...++.+.|+|-+..+..+++ +||
T Consensus 348 l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H---~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwd 424 (1113)
T KOG0644|consen 348 LAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLH---NLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWD 424 (1113)
T ss_pred hhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhh---hhcccccceeeeeecCCCcHhhhhccCCCceEeee
Confidence 33433333333333 1238899999888766 67789999999999998887776554 777
Q ss_pred cCCCCc
Q 004217 259 LDSSES 264 (767)
Q Consensus 259 l~s~~~ 264 (767)
+..+..
T Consensus 425 i~eg~p 430 (1113)
T KOG0644|consen 425 IWEGIP 430 (1113)
T ss_pred cccCCc
Confidence 775443
No 156
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.36 E-value=2.6e-12 Score=137.10 Aligned_cols=152 Identities=18% Similarity=0.235 Sum_probs=113.3
Q ss_pred CCCCCCCCeEEEEECCCC-CeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECC
Q 004217 102 PLSPPPRSTIAAAFSPDG-KTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAS 180 (767)
Q Consensus 102 ~L~gH~~sVtsVaFSpDG-~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~ 180 (767)
.|.+|.+.|.|++=+|.. ..+++|+.||.|+|||+...+++.+|+.|.+.|..|++.. ..+++++.|++|+.|-+.
T Consensus 61 ~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~---~~~~tvgdDKtvK~wk~~ 137 (433)
T KOG0268|consen 61 SLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ---TSFFTVGDDKTVKQWKID 137 (433)
T ss_pred hccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc---cceEEecCCcceeeeecc
Confidence 578999999999999966 7899999999999999999999999999999999999965 778999999999999743
Q ss_pred C---------------------------CeEEEeec------------CCCCeEEEEEcCCCC-EEEEEE-CCcEEEEEc
Q 004217 181 T---------------------------AECIGSRD------------FYRPIASIAFHASGE-LLAVAS-GHKLYIWRY 219 (767)
Q Consensus 181 t---------------------------g~~i~~l~------------h~~~VtsVafSPdG~-~LAsgS-dd~V~VWDl 219 (767)
. |+.+..+. ....|.++.|+|... .|+++. ++.|.+||+
T Consensus 138 ~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~ 217 (433)
T KOG0268|consen 138 GPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDL 217 (433)
T ss_pred CCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEec
Confidence 2 11111111 123467888888776 566664 455999999
Q ss_pred CCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCCcC
Q 004217 220 NMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLD 260 (767)
Q Consensus 220 ~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgsvwdl~ 260 (767)
++...+.+.. ..-.-+.|+|+|.+-.++++.++.++-
T Consensus 218 R~~~Pl~KVi----~~mRTN~IswnPeafnF~~a~ED~nlY 254 (433)
T KOG0268|consen 218 RQASPLKKVI----LTMRTNTICWNPEAFNFVAANEDHNLY 254 (433)
T ss_pred ccCCccceee----eeccccceecCccccceeeccccccce
Confidence 9998766222 233457899999544344444444333
No 157
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.35 E-value=2.1e-11 Score=133.66 Aligned_cols=172 Identities=12% Similarity=0.116 Sum_probs=142.4
Q ss_pred eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC-------------CCCCCCCCeEEEEECCC--CCeEEEEeCCCeEEEEEC
Q 004217 72 QIFEAGRDARRGLASWVEAESLHHLRPKYC-------------PLSPPPRSTIAAAFSPD--GKTLASTHGDHTVKIIDC 136 (767)
Q Consensus 72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~-------------~L~gH~~sVtsVaFSpD--G~~LASgs~DGtVrVWDl 136 (767)
..++.+++++..++++++||.|.+|++..- .+..|+-+|+++...+. ..+|++++.|.++|+||+
T Consensus 126 ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdl 205 (476)
T KOG0646|consen 126 ITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDL 205 (476)
T ss_pred eeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEe
Confidence 788889999999999999999999987431 36789999999998874 458999999999999999
Q ss_pred CCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCe----------------EEEe-ecCCC--CeEEE
Q 004217 137 QTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAE----------------CIGS-RDFYR--PIASI 197 (767)
Q Consensus 137 ~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~----------------~i~~-l~h~~--~VtsV 197 (767)
..|..+.++. -...+.++..+| .+..++.|+.+|.|.+.++.+-. .+.. .+|.+ .|+|+
T Consensus 206 S~g~LLlti~-fp~si~av~lDp-ae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcL 283 (476)
T KOG0646|consen 206 SLGVLLLTIT-FPSSIKAVALDP-AERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCL 283 (476)
T ss_pred ccceeeEEEe-cCCcceeEEEcc-cccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEE
Confidence 9999887775 457799999999 88999999999999998875422 1111 24555 99999
Q ss_pred EEcCCCCEEEEEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCC
Q 004217 198 AFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAA 248 (767)
Q Consensus 198 afSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~ 248 (767)
+.+-||.+|++|+.++ |+|||+...+.++ .+..-.++|+-+.+.|-.+
T Consensus 284 ais~DgtlLlSGd~dg~VcvWdi~S~Q~iR---tl~~~kgpVtnL~i~~~~~ 332 (476)
T KOG0646|consen 284 AISTDGTLLLSGDEDGKVCVWDIYSKQCIR---TLQTSKGPVTNLQINPLER 332 (476)
T ss_pred EEecCccEEEeeCCCCCEEEEecchHHHHH---HHhhhccccceeEeecccc
Confidence 9999999999999655 9999999988776 3333578899999876544
No 158
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.35 E-value=9.8e-12 Score=141.26 Aligned_cols=188 Identities=20% Similarity=0.327 Sum_probs=142.9
Q ss_pred ecccccceecCCcceEEEEEEcCCCEEEEEeCCC-----eEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCC
Q 004217 58 LLGETARKCSGSFSQIFEAGRDARRGLASWVEAE-----SLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGD 128 (767)
Q Consensus 58 ~wd~~~~~~~~s~s~~~vA~sd~g~~LaSgs~Dg-----sIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~D 128 (767)
+|.+.-.-+...+...+++.++.+..+++.+... .|++|+..+. .|.+|.-.|+.++|||||++|++.+.|
T Consensus 514 LwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRD 593 (764)
T KOG1063|consen 514 LWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRD 593 (764)
T ss_pred cchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecC
Confidence 4544433344445577888889999999987654 3899998764 488999999999999999999999999
Q ss_pred CeEEEEECCCCe----EEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCC--eEEEe---ecCCCCeEEEEE
Q 004217 129 HTVKIIDCQTGS----CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTA--ECIGS---RDFYRPIASIAF 199 (767)
Q Consensus 129 GtVrVWDl~tg~----~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg--~~i~~---l~h~~~VtsVaf 199 (767)
.++.+|...... ....++.|+.-|+++.|+| ++.+|+|+|.|++|++|..... +.+.. +.+...|+.++|
T Consensus 594 Rt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~p-de~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~ 672 (764)
T KOG1063|consen 594 RTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSP-DEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAY 672 (764)
T ss_pred ceEEeeeeecccchhhhhccccccceEEEEcccCc-ccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEe
Confidence 999999985432 1234688999999999999 8999999999999999998877 44433 568899999999
Q ss_pred cCC-----CCEEEEEECCc-EEEEEcCCCcccc---------CCeEEecCCCCeEEEEEccC
Q 004217 200 HAS-----GELLAVASGHK-LYIWRYNMREETS---------SPRIVLRTRRSLRAVHFHPH 246 (767)
Q Consensus 200 SPd-----G~~LAsgSdd~-V~VWDl~t~~~~~---------~~~~l~~h~~~VtsVaFSPD 246 (767)
.|- +..+++|-..+ |.+|......+.. .......|...|+.+.|.|.
T Consensus 673 ~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~ 734 (764)
T KOG1063|consen 673 LPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPT 734 (764)
T ss_pred eccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccc
Confidence 873 23667777654 9999865211110 01122346778999999986
No 159
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.34 E-value=8.3e-11 Score=119.13 Aligned_cols=173 Identities=19% Similarity=0.214 Sum_probs=138.7
Q ss_pred CCCEEEEE-eCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEcc--C----
Q 004217 80 ARRGLASW-VEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHG--H---- 148 (767)
Q Consensus 80 ~g~~LaSg-s~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~g--H---- 148 (767)
++..|+++ ..|.+|.+-|...+ .+.+|++-|.++ ++-+|-.+++|+.|.+|++||++-..++.++.. |
T Consensus 151 ~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~gl 229 (350)
T KOG0641|consen 151 GGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGL 229 (350)
T ss_pred CceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCc
Confidence 34556654 35667777777666 378999999886 233588999999999999999998888877632 2
Q ss_pred -CCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEee-cCCCCeEEEEEcCCCCEEEEEECC-cEEEEEcCCCccc
Q 004217 149 -RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASGH-KLYIWRYNMREET 225 (767)
Q Consensus 149 -~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l-~h~~~VtsVafSPdG~~LAsgSdd-~V~VWDl~t~~~~ 225 (767)
...|.+++..| .+++|++|-.|....+||++.++.++.+ .|...|.++.|+|...|+.+++.| +|++-|+...-..
T Consensus 230 essavaav~vdp-sgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~ 308 (350)
T KOG0641|consen 230 ESSAVAAVAVDP-SGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAH 308 (350)
T ss_pred ccceeEEEEECC-CcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhh
Confidence 25689999999 9999999999999999999999999885 589999999999999999999955 4999998643211
Q ss_pred -cCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 004217 226 -SSPRIVLRTRRSLRAVHFHPHAAPLLLTA 254 (767)
Q Consensus 226 -~~~~~l~~h~~~VtsVaFSPDG~~LlaSg 254 (767)
.+......|++.+..+.|+|..-.++.++
T Consensus 309 el~~~vv~ehkdk~i~~rwh~~d~sfisss 338 (350)
T KOG0641|consen 309 ELPIMVVAEHKDKAIQCRWHPQDFSFISSS 338 (350)
T ss_pred cCceEEEEeccCceEEEEecCccceeeecc
Confidence 12445677999999999999886666554
No 160
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.33 E-value=1.7e-11 Score=136.24 Aligned_cols=172 Identities=14% Similarity=0.218 Sum_probs=132.3
Q ss_pred EcCCCEEEEEeCCCeEEEEeCCCCC--------CCCCCCCeEEEEECC-CCCeEEEEeCCCeEEEEECCC----------
Q 004217 78 RDARRGLASWVEAESLHHLRPKYCP--------LSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQT---------- 138 (767)
Q Consensus 78 sd~g~~LaSgs~DgsIrlWd~~t~~--------L~gH~~sVtsVaFSp-DG~~LASgs~DGtVrVWDl~t---------- 138 (767)
...+..|..+-.-|.|.+.|....+ ..-.+..|+|+.|-| +..+++.+..+|.+.+||.+-
T Consensus 182 ~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~ 261 (636)
T KOG2394|consen 182 TPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQ 261 (636)
T ss_pred CCCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCccc
Confidence 3566777778888888888876532 112347899999999 556777788899999997621
Q ss_pred ----Ce--------------EEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec-CCCCeEEEEE
Q 004217 139 ----GS--------------CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAF 199 (767)
Q Consensus 139 ----g~--------------~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~-h~~~VtsVaf 199 (767)
+. ++..+.--.+.|..++|+| |+++|++.+.||.+||||..+.+.+..++ .-+...|++|
T Consensus 262 ~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~-DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcW 340 (636)
T KOG2394|consen 262 ALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSP-DGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCW 340 (636)
T ss_pred ccCCCCeeEEeeeeccccCCccceeEeccccccceeEcC-CCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEE
Confidence 11 1111222245788899999 99999999999999999999888776654 3467899999
Q ss_pred cCCCCEEEEEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEeeC
Q 004217 200 HASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVN 257 (767)
Q Consensus 200 SPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgsvw 257 (767)
+|||+||++|+.|. |.||.+...+.+. .-.+|+++|..|+|.| ..++.+.|
T Consensus 341 SPDGKyIvtGGEDDLVtVwSf~erRVVA---RGqGHkSWVs~VaFDp----ytt~~ee~ 392 (636)
T KOG2394|consen 341 SPDGKYIVTGGEDDLVTVWSFEERRVVA---RGQGHKSWVSVVAFDP----YTTSTEEW 392 (636)
T ss_pred cCCccEEEecCCcceEEEEEeccceEEE---eccccccceeeEeecc----cccccccc
Confidence 99999999999766 9999999888765 6678999999999998 23444555
No 161
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.33 E-value=2.7e-10 Score=119.12 Aligned_cols=170 Identities=29% Similarity=0.389 Sum_probs=137.1
Q ss_pred cCCC-EEEEEeC-CCeEEEEeCCC-C----CCCCCCCCeEEEEECCCCCeEEEEeC-CCeEEEEECCCCeEEEEEccCCC
Q 004217 79 DARR-GLASWVE-AESLHHLRPKY-C----PLSPPPRSTIAAAFSPDGKTLASTHG-DHTVKIIDCQTGSCLKVLHGHRR 150 (767)
Q Consensus 79 d~g~-~LaSgs~-DgsIrlWd~~t-~----~L~gH~~sVtsVaFSpDG~~LASgs~-DGtVrVWDl~tg~~l~~L~gH~~ 150 (767)
.++. .+...+. |+.+++|+... . .+..|...|.+++|+++++.+++++. |+.+++|++.+++.+..+.+|..
T Consensus 120 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (466)
T COG2319 120 PDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTD 199 (466)
T ss_pred CCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCC
Confidence 3444 4444344 89999999986 2 57799999999999999999999886 99999999999888999999999
Q ss_pred CcEEEEEccCCCc-EEEEEeCCCeEEEEECCCCeEEE-ee-cCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCcccc
Q 004217 151 TPWVVRFHPLNPT-IIASGSLDHEVRLWNASTAECIG-SR-DFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETS 226 (767)
Q Consensus 151 ~V~sLafsP~dg~-lLaSgS~DGtVrIWDl~tg~~i~-~l-~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~ 226 (767)
.|.+++|+| ++. .+++++.|+.|++||...+..+. .+ .|...+ ...|++++.++++++.+. +++||++.....
T Consensus 200 ~v~~~~~~~-~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~- 276 (466)
T COG2319 200 PVSSLAFSP-DGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSL- 276 (466)
T ss_pred ceEEEEEcC-CcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcE-
Confidence 999999998 666 66666999999999999887777 33 355554 338999998888777655 999999877651
Q ss_pred CCeEEecCCCCeEEEEEccCCCeEEE
Q 004217 227 SPRIVLRTRRSLRAVHFHPHAAPLLL 252 (767)
Q Consensus 227 ~~~~l~~h~~~VtsVaFSPDG~~Lla 252 (767)
......|...|.++.|+|++..+++
T Consensus 277 -~~~~~~~~~~v~~~~~~~~~~~~~~ 301 (466)
T COG2319 277 -LRTLSGHSSSVLSVAFSPDGKLLAS 301 (466)
T ss_pred -EEEEecCCccEEEEEECCCCCEEEE
Confidence 1223678899999999998887776
No 162
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.32 E-value=2e-11 Score=127.52 Aligned_cols=170 Identities=18% Similarity=0.200 Sum_probs=136.1
Q ss_pred CCeEEEEeCCCC-------------CCCCCCCCeEEEEECC-CCCeEEEEeCCCeEEEEECCCCe---EEEEEccCCCCc
Q 004217 90 AESLHHLRPKYC-------------PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGS---CLKVLHGHRRTP 152 (767)
Q Consensus 90 DgsIrlWd~~t~-------------~L~gH~~sVtsVaFSp-DG~~LASgs~DGtVrVWDl~tg~---~l~~L~gH~~~V 152 (767)
+..+|+|.+... +-..+..++++.+|+. |.++|.+.+-|-+..|||++++. ....|-.|...|
T Consensus 120 ~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV 199 (364)
T KOG0290|consen 120 SDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEV 199 (364)
T ss_pred cCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcce
Confidence 456899988631 2335677899999998 88999999999999999999873 356678899999
Q ss_pred EEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEee-c--C-CCCeEEEEEcCCC-CEEEEEECC--cEEEEEcCCCccc
Q 004217 153 WVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-D--F-YRPIASIAFHASG-ELLAVASGH--KLYIWRYNMREET 225 (767)
Q Consensus 153 ~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l-~--h-~~~VtsVafSPdG-~~LAsgSdd--~V~VWDl~t~~~~ 225 (767)
..|+|.....+.|+|.+.||.||+||++..+....+ + . ..+...++|+++. +++|+-..| +|.|.|++....
T Consensus 200 ~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~t- 278 (364)
T KOG0290|consen 200 YDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCT- 278 (364)
T ss_pred eEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCc-
Confidence 999999866789999999999999999986654442 2 2 4567889998866 577766644 399999998765
Q ss_pred cCCeEEecCCCCeEEEEEccCCCeEEEEEe------eCCcCC
Q 004217 226 SSPRIVLRTRRSLRAVHFHPHAAPLLLTAE------VNDLDS 261 (767)
Q Consensus 226 ~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs------vwdl~s 261 (767)
+...+.+|...|+.|+|.|....-+.+++ +||+..
T Consensus 279 -pva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q 319 (364)
T KOG0290|consen 279 -PVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQ 319 (364)
T ss_pred -ceehhhcCcccccceEecCCCCceeeecCCcceEEEEeccc
Confidence 34578899999999999998876666655 888874
No 163
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=3.6e-10 Score=128.10 Aligned_cols=158 Identities=14% Similarity=0.133 Sum_probs=112.9
Q ss_pred eEEEEeCCCC---CCCCCCCCeEEEEECCCCCeEEEEeC---CCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEE
Q 004217 92 SLHHLRPKYC---PLSPPPRSTIAAAFSPDGKTLASTHG---DHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTII 165 (767)
Q Consensus 92 sIrlWd~~t~---~L~gH~~sVtsVaFSpDG~~LASgs~---DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lL 165 (767)
.|.+||.+.. .+..+...+...+|||||+.|+..+. +..|.+||+.+++... +....+.+..+.|+| |++.|
T Consensus 180 ~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SP-DG~~L 257 (429)
T PRK03629 180 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSP-DGSKL 257 (429)
T ss_pred eEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECC-CCCEE
Confidence 6888887654 35567778999999999999987643 4579999998886432 222333455689999 77766
Q ss_pred EE-EeCCC--eEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEECC--c--EEEEEcCCCccccCCeEEecCCCCe
Q 004217 166 AS-GSLDH--EVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGH--K--LYIWRYNMREETSSPRIVLRTRRSL 238 (767)
Q Consensus 166 aS-gS~DG--tVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSdd--~--V~VWDl~t~~~~~~~~~l~~h~~~V 238 (767)
+. .+.++ .|.+||+.+++..........+....|+|||+.|+..++. . |+++|+.+++.. .+..+....
T Consensus 258 a~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~----~lt~~~~~~ 333 (429)
T PRK03629 258 AFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ----RITWEGSQN 333 (429)
T ss_pred EEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE----EeecCCCCc
Confidence 54 34455 5889999988877666555677889999999988887753 2 666677665432 233344456
Q ss_pred EEEEEccCCCeEEEEEe
Q 004217 239 RAVHFHPHAAPLLLTAE 255 (767)
Q Consensus 239 tsVaFSPDG~~LlaSgs 255 (767)
....|+|||++|+.++.
T Consensus 334 ~~~~~SpDG~~Ia~~~~ 350 (429)
T PRK03629 334 QDADVSSDGKFMVMVSS 350 (429)
T ss_pred cCEEECCCCCEEEEEEc
Confidence 78999999998887664
No 164
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.31 E-value=2.9e-11 Score=128.53 Aligned_cols=182 Identities=17% Similarity=0.235 Sum_probs=139.6
Q ss_pred CEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECC--CCCeEEEEeCCCeEEEEECCCCeEE--EEEccCC-CCc
Q 004217 82 RGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSP--DGKTLASTHGDHTVKIIDCQTGSCL--KVLHGHR-RTP 152 (767)
Q Consensus 82 ~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSp--DG~~LASgs~DGtVrVWDl~tg~~l--~~L~gH~-~~V 152 (767)
..++.+...++|++||..++ ++++|+..++.++|.. .+..+.+|+.||+||+||+++.... ..+..+. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 45777888999999999885 5789999999999988 5678999999999999999886544 3445565 345
Q ss_pred EEEEEccCCCcEEEEEeC----CCeEEEEECCCCeE-EEee--cCCCCeEEEEEcCCC-CEEEEEECCc-EEEEEcCCCc
Q 004217 153 WVVRFHPLNPTIIASGSL----DHEVRLWNASTAEC-IGSR--DFYRPIASIAFHASG-ELLAVASGHK-LYIWRYNMRE 223 (767)
Q Consensus 153 ~sLafsP~dg~lLaSgS~----DGtVrIWDl~tg~~-i~~l--~h~~~VtsVafSPdG-~~LAsgSdd~-V~VWDl~t~~ 223 (767)
.+++-+- +.+++++|.. |-.|.+||++..+. ++.+ .|...|+++.|+|.. ++|++|+-|+ |.|||++...
T Consensus 121 ~~ld~nc-k~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~ 199 (376)
T KOG1188|consen 121 ICLDLNC-KKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDN 199 (376)
T ss_pred eEeeccC-cCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCc
Confidence 5666655 6678888753 67899999998776 5554 389999999999977 5899999777 9999998775
Q ss_pred cccCCeEEecCCCCeEEEEEccCC--CeEEEEE----eeCCcCCCCc
Q 004217 224 ETSSPRIVLRTRRSLRAVHFHPHA--APLLLTA----EVNDLDSSES 264 (767)
Q Consensus 224 ~~~~~~~l~~h~~~VtsVaFSPDG--~~LlaSg----svwdl~s~~~ 264 (767)
+.........|...|..+.|+.++ +.+..+- .+|++..++.
T Consensus 200 EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~ 246 (376)
T KOG1188|consen 200 EEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSE 246 (376)
T ss_pred chhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCCh
Confidence 544334566788899999999998 5333221 2777765553
No 165
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.31 E-value=3.4e-11 Score=131.87 Aligned_cols=182 Identities=19% Similarity=0.174 Sum_probs=144.0
Q ss_pred eEEEEEEcCCCEEEEEeCCCeEEEEeCCCCCCC---CCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccC
Q 004217 72 QIFEAGRDARRGLASWVEAESLHHLRPKYCPLS---PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGH 148 (767)
Q Consensus 72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~L~---gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH 148 (767)
...+.++.++.+|+..+..|-|.+.-..++++. .-.+.|.+++|+.|++.|++++.+|.|.+||++...+++.+...
T Consensus 306 ~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~ 385 (514)
T KOG2055|consen 306 MERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDD 385 (514)
T ss_pred hheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeec
Confidence 556778888899999999999999999888654 34678999999999999999999999999999999999998643
Q ss_pred CCCc--EEEEEccCCCcEEEEEeCCCeEEEEECCC------CeEEEee-cCCCCeEEEEEcCCCCEEEEEEC---CcEEE
Q 004217 149 RRTP--WVVRFHPLNPTIIASGSLDHEVRLWNAST------AECIGSR-DFYRPIASIAFHASGELLAVASG---HKLYI 216 (767)
Q Consensus 149 ~~~V--~sLafsP~dg~lLaSgS~DGtVrIWDl~t------g~~i~~l-~h~~~VtsVafSPdG~~LAsgSd---d~V~V 216 (767)
+.| ++++.++ ++.+|++|+..|.|.|||..+ .++++.+ .....|+++.|++++++||.+|. +.+++
T Consensus 386 -G~v~gts~~~S~-ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrL 463 (514)
T KOG2055|consen 386 -GSVHGTSLCISL-NGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRL 463 (514)
T ss_pred -CccceeeeeecC-CCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEE
Confidence 333 4566678 889999999999999999764 3444443 35678999999999999999984 44998
Q ss_pred EEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217 217 WRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (767)
Q Consensus 217 WDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs 255 (767)
-.+.........-.....-+.|+|++|||.|.+|+.+-.
T Consensus 464 VHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe 502 (514)
T KOG2055|consen 464 VHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNE 502 (514)
T ss_pred EeccceeeeccCCCCCCcccceEEEEecCCCceEEeecC
Confidence 888766543211112233457999999999998877654
No 166
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.31 E-value=2.2e-10 Score=129.74 Aligned_cols=157 Identities=14% Similarity=0.171 Sum_probs=114.0
Q ss_pred eEEEEeCCCC---CCCCCCCCeEEEEECCCCCeEEEEeCC---CeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEE
Q 004217 92 SLHHLRPKYC---PLSPPPRSTIAAAFSPDGKTLASTHGD---HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTII 165 (767)
Q Consensus 92 sIrlWd~~t~---~L~gH~~sVtsVaFSpDG~~LASgs~D---GtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lL 165 (767)
.|.+||.... ++..+...+...+|+|||+.|+..+.+ ..|++||+.+++.. .+....+....+.|+| +++.+
T Consensus 185 ~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~-~l~~~~g~~~~~~~Sp-DG~~l 262 (433)
T PRK04922 185 ALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE-LVASFRGINGAPSFSP-DGRRL 262 (433)
T ss_pred EEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE-EeccCCCCccCceECC-CCCEE
Confidence 5888887654 366778889999999999999988743 47999999888753 3344445556789999 66654
Q ss_pred -EEEeCCC--eEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEECC--c--EEEEEcCCCccccCCeEEecCCCCe
Q 004217 166 -ASGSLDH--EVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGH--K--LYIWRYNMREETSSPRIVLRTRRSL 238 (767)
Q Consensus 166 -aSgS~DG--tVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSdd--~--V~VWDl~t~~~~~~~~~l~~h~~~V 238 (767)
++.+.++ .|.+||+.+++......+.......+|+|||++|+..++. . |+++|+.+++... +..+....
T Consensus 263 ~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~----lt~~g~~~ 338 (433)
T PRK04922 263 ALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER----LTFQGNYN 338 (433)
T ss_pred EEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE----eecCCCCc
Confidence 5556665 5999999988866555555555678999999999888742 2 7777776655322 22233445
Q ss_pred EEEEEccCCCeEEEEE
Q 004217 239 RAVHFHPHAAPLLLTA 254 (767)
Q Consensus 239 tsVaFSPDG~~LlaSg 254 (767)
..++|+|||++|+.+.
T Consensus 339 ~~~~~SpDG~~Ia~~~ 354 (433)
T PRK04922 339 ARASVSPDGKKIAMVH 354 (433)
T ss_pred cCEEECCCCCEEEEEE
Confidence 5789999999888764
No 167
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.31 E-value=6e-11 Score=131.91 Aligned_cols=154 Identities=18% Similarity=0.204 Sum_probs=120.0
Q ss_pred CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEE-ccCCCCcEEEEEccC-CCcEEEEEeCCCeEEEEEC
Q 004217 102 PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL-HGHRRTPWVVRFHPL-NPTIIASGSLDHEVRLWNA 179 (767)
Q Consensus 102 ~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L-~gH~~~V~sLafsP~-dg~lLaSgS~DGtVrIWDl 179 (767)
+|.||++.|+|++|+.||.+|++|++|-.+.|||.-..+.++.+ .||.+.|.++.|-|. +.++++||..|..|+++|+
T Consensus 45 eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl 124 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDL 124 (758)
T ss_pred hhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEec
Confidence 68999999999999999999999999999999999888888776 689999999999984 4568899999999999999
Q ss_pred CCCeE----------EEee-cCCCCeEEEEEcCCC-CEEEEEECCc-EEEEEcCCCccccCC-------eEEecCCCCeE
Q 004217 180 STAEC----------IGSR-DFYRPIASIAFHASG-ELLAVASGHK-LYIWRYNMREETSSP-------RIVLRTRRSLR 239 (767)
Q Consensus 180 ~tg~~----------i~~l-~h~~~VtsVafSPdG-~~LAsgSdd~-V~VWDl~t~~~~~~~-------~~l~~h~~~Vt 239 (767)
...+. ...+ .|...|..++-.|++ ..+.+++.|+ |+-+|++........ ..+....-...
T Consensus 125 ~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk 204 (758)
T KOG1310|consen 125 DSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELK 204 (758)
T ss_pred ccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheee
Confidence 85221 1111 377788889999999 5777888666 999999975432100 01111123467
Q ss_pred EEEEccCCCeEEEEEe
Q 004217 240 AVHFHPHAAPLLLTAE 255 (767)
Q Consensus 240 sVaFSPDG~~LlaSgs 255 (767)
++..+|...++++.|.
T Consensus 205 ~ltisp~rp~~laVGg 220 (758)
T KOG1310|consen 205 CLTISPSRPYYLAVGG 220 (758)
T ss_pred eeeecCCCCceEEecC
Confidence 8999998887776655
No 168
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.29 E-value=2.4e-11 Score=128.02 Aligned_cols=145 Identities=16% Similarity=0.173 Sum_probs=113.9
Q ss_pred eEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec
Q 004217 110 TIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD 189 (767)
Q Consensus 110 VtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~ 189 (767)
..|+.||+.|.+||+|+.||.|.|||+.|...-+.|.+|..+|.+++|++ ++++|+++|.|..|++||+..|.+++.+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~-dgr~LltsS~D~si~lwDl~~gs~l~rir 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSR-DGRKLLTSSRDWSIKLWDLLKGSPLKRIR 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecC-CCCEeeeecCCceeEEEeccCCCceeEEE
Confidence 78999999999999999999999999999888888999999999999999 99999999999999999999999999999
Q ss_pred CCCCeEEEEEcCCCC--EEEEEECCcEEEEEcCCCccccCCeEEecC-CCCeEEEEEccCCCeEEEEEe
Q 004217 190 FYRPIASIAFHASGE--LLAVASGHKLYIWRYNMREETSSPRIVLRT-RRSLRAVHFHPHAAPLLLTAE 255 (767)
Q Consensus 190 h~~~VtsVafSPdG~--~LAsgSdd~V~VWDl~t~~~~~~~~~l~~h-~~~VtsVaFSPDG~~LlaSgs 255 (767)
+..+|+.+.|+|..+ .+++--+..-.+-++...+....+..-.+. ...-.+..|.+.|++++++.+
T Consensus 105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGts 173 (405)
T KOG1273|consen 105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTS 173 (405)
T ss_pred ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecC
Confidence 999999999999765 344433444455555443321101100011 112233469999998888654
No 169
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.28 E-value=8.4e-11 Score=124.31 Aligned_cols=179 Identities=16% Similarity=0.171 Sum_probs=139.8
Q ss_pred eEEEEEEcCCCEEEEEeCCCeEEEEeCC-CC------CC-----CCCCCCeEEEEECC-CCCeEEEEeCCCeEEEEECCC
Q 004217 72 QIFEAGRDARRGLASWVEAESLHHLRPK-YC------PL-----SPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQT 138 (767)
Q Consensus 72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~-t~------~L-----~gH~~sVtsVaFSp-DG~~LASgs~DGtVrVWDl~t 138 (767)
+.++.++.+|..|+.|- ...|+++|.. .+ .. .+..+-|.+++|+| +.+.++.|+...++-||.-..
T Consensus 161 AhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~ 239 (406)
T KOG2919|consen 161 AHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG 239 (406)
T ss_pred heeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCC
Confidence 66778899999999884 6689999983 22 11 23467799999999 777999999999999999999
Q ss_pred CeEEEEEccCCCCcEEEEEccCCCcEEEEEeC-CCeEEEEECCCC-eEEEeec-CCC-CeEE--EEEcCCCCEEEEEECC
Q 004217 139 GSCLKVLHGHRRTPWVVRFHPLNPTIIASGSL-DHEVRLWNASTA-ECIGSRD-FYR-PIAS--IAFHASGELLAVASGH 212 (767)
Q Consensus 139 g~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~-DGtVrIWDl~tg-~~i~~l~-h~~-~Vts--VafSPdG~~LAsgSdd 212 (767)
+.++..+.+|.+.|+.++|++ +++.|++|.. |-.|..||++.. .++..+. |.. .... ....|+|++|++|+.+
T Consensus 240 ~~pl~llggh~gGvThL~~~e-dGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~td 318 (406)
T KOG2919|consen 240 RRPLQLLGGHGGGVTHLQWCE-DGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTD 318 (406)
T ss_pred CCceeeecccCCCeeeEEecc-CcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCC
Confidence 999999999999999999999 8888888775 788999999964 3444433 222 2223 4557899999999755
Q ss_pred c-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217 213 K-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (767)
Q Consensus 213 ~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs 255 (767)
+ |++||+++... ....+..+...|+.|+++|--. |+++++
T Consensus 319 G~V~vwdlk~~gn--~~sv~~~~sd~vNgvslnP~mp-ilatss 359 (406)
T KOG2919|consen 319 GSVRVWDLKDLGN--EVSVTGNYSDTVNGVSLNPIMP-ILATSS 359 (406)
T ss_pred ccEEEEecCCCCC--cccccccccccccceecCcccc-eeeecc
Confidence 5 99999988332 2336677899999999999955 555443
No 170
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.27 E-value=1.2e-10 Score=121.72 Aligned_cols=182 Identities=15% Similarity=0.146 Sum_probs=142.8
Q ss_pred eEEEEEEcCCCEEEEEeCCCeEEEEeCCCCCC----------CCCCCCeEEEEECC--CCCeEEEEeCCCeEEEEECCCC
Q 004217 72 QIFEAGRDARRGLASWVEAESLHHLRPKYCPL----------SPPPRSTIAAAFSP--DGKTLASTHGDHTVKIIDCQTG 139 (767)
Q Consensus 72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~L----------~gH~~sVtsVaFSp--DG~~LASgs~DGtVrVWDl~tg 139 (767)
..++.+..++..+++-. |..|.+|++....- .+|....++-+||| ||+.+++.+ |++++.||+++.
T Consensus 126 i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~ 203 (370)
T KOG1007|consen 126 INCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTM 203 (370)
T ss_pred eeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcEEEEEccch
Confidence 56777888899998876 88899999987521 24677789999999 898888765 689999999998
Q ss_pred eEEEEE-ccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCC-eEEEee-cCCCCeEEEEEcCCCC-EEEEEECCc-E
Q 004217 140 SCLKVL-HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTA-ECIGSR-DFYRPIASIAFHASGE-LLAVASGHK-L 214 (767)
Q Consensus 140 ~~l~~L-~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg-~~i~~l-~h~~~VtsVafSPdG~-~LAsgSdd~-V 214 (767)
++...+ ..|...|..+.|+|....+|++|+.||.|+|||.+.. .++.++ +|...|.++.|+|... +|.+|+.|. |
T Consensus 204 ~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V 283 (370)
T KOG1007|consen 204 KKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAV 283 (370)
T ss_pred hhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCcee
Confidence 766555 5788899999999977779999999999999999964 455554 5889999999999764 666776555 8
Q ss_pred EEEEcCCCc---c------------------cc-----CCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217 215 YIWRYNMRE---E------------------TS-----SPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (767)
Q Consensus 215 ~VWDl~t~~---~------------------~~-----~~~~l~~h~~~VtsVaFSPDG~~LlaSgs 255 (767)
.+|....-. . .. ....+..|.+.|++++||.-..+++++-+
T Consensus 284 ~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLS 350 (370)
T KOG1007|consen 284 NLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLS 350 (370)
T ss_pred EEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEec
Confidence 888754221 0 00 12245678999999999999998888764
No 171
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.27 E-value=3.5e-10 Score=119.65 Aligned_cols=221 Identities=15% Similarity=0.177 Sum_probs=161.9
Q ss_pred eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC-------CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEEC-CCCe--E
Q 004217 72 QIFEAGRDARRGLASWVEAESLHHLRPKYC-------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDC-QTGS--C 141 (767)
Q Consensus 72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~-------~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl-~tg~--~ 141 (767)
..+.+...++..++.+.+...|.+|..... +++.|...|++|+|+|..+.|++|+.|..-+||.. ..++ +
T Consensus 13 itchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~Wkp 92 (361)
T KOG1523|consen 13 ITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKP 92 (361)
T ss_pred eeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeecc
Confidence 566788889999999999999999988754 47789999999999999999999999999999998 4443 4
Q ss_pred EEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEe-----ecCCCCeEEEEEcCCCCEEEEEECC-cEE
Q 004217 142 LKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-----RDFYRPIASIAFHASGELLAVASGH-KLY 215 (767)
Q Consensus 142 l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~-----l~h~~~VtsVafSPdG~~LAsgSdd-~V~ 215 (767)
.-.|..+.+.++++.|+| .++.|++|+....|.+|-++..+--.. ..+.+.|++++|+|++-+|++|+.| +++
T Consensus 93 tlvLlRiNrAAt~V~WsP-~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~r 171 (361)
T KOG1523|consen 93 TLVLLRINRAATCVKWSP-KENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCR 171 (361)
T ss_pred ceeEEEeccceeeEeecC-cCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCccee
Confidence 445667899999999999 999999999999999998876544322 3467889999999999999999954 477
Q ss_pred EEEcC-----CCcccc----------CCeEEecCCCCeEEEEEccCCCeEEEEEeeCCcCCCCcceeEeecCCCccCCCC
Q 004217 216 IWRYN-----MREETS----------SPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPP 280 (767)
Q Consensus 216 VWDl~-----t~~~~~----------~~~~l~~h~~~VtsVaFSPDG~~LlaSgsvwdl~s~~~~~~l~t~sG~~~~p~~ 280 (767)
||..- ...... .........+.|..+.|+|+|..|+..+- +.
T Consensus 172 VfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~H-----------------------ds 228 (361)
T KOG1523|consen 172 VFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGH-----------------------DS 228 (361)
T ss_pred EEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecC-----------------------CC
Confidence 77532 211000 00112234678999999999998775442 12
Q ss_pred eEEEecCCCCC--CCceeeccCCCCCCceeeEEecCCCEEEE
Q 004217 281 VICMAGAHSSS--HPGLAEEVPLITPPFLRPSFVRDDERISL 320 (767)
Q Consensus 281 ~v~l~~~~Ssd--~~~L~sg~~~~slpil~psFSpDg~rIva 320 (767)
.+.+.+...+. ...+... .+|.+...|-.+...+.+
T Consensus 229 ~v~~~da~~p~~~v~~~~~~----~lP~ls~~~ise~~vv~a 266 (361)
T KOG1523|consen 229 TVSFVDAAGPSERVQSVATA----QLPLLSVSWISENSVVAA 266 (361)
T ss_pred ceEEeecCCCchhccchhhc----cCCceeeEeecCCceeec
Confidence 34444433332 1122222 377777777777766665
No 172
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.27 E-value=2.7e-10 Score=129.60 Aligned_cols=178 Identities=13% Similarity=0.112 Sum_probs=143.1
Q ss_pred eEEEEEEcCCCEEEEEeCCCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEE--EEE
Q 004217 72 QIFEAGRDARRGLASWVEAESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCL--KVL 145 (767)
Q Consensus 72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~----L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l--~~L 145 (767)
...+++. ++.+|++.+-+|+|.-||+.+.+ +..-.+.|++++.+|.+..++.|+.||.++.++...++.. ..|
T Consensus 72 IE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l 150 (691)
T KOG2048|consen 72 IESLAWA-EGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSL 150 (691)
T ss_pred eeeEEEc-cCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeec
Confidence 3334443 78889999999999999998863 4566788999999999999999999998888888877654 344
Q ss_pred ccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEee-----c----CCCCeEEEEEcCCCCEEEEEE-CCcEE
Q 004217 146 HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-----D----FYRPIASIAFHASGELLAVAS-GHKLY 215 (767)
Q Consensus 146 ~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l-----~----h~~~VtsVafSPdG~~LAsgS-dd~V~ 215 (767)
...++.|.+++|+| ++..+++|+.||.|++||..++..+... + ...-|+++.|-.++. |++|. .|.|.
T Consensus 151 ~rq~sRvLslsw~~-~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~t-I~sgDS~G~V~ 228 (691)
T KOG2048|consen 151 MRQKSRVLSLSWNP-TGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDST-IASGDSAGTVT 228 (691)
T ss_pred ccccceEEEEEecC-CccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCc-EEEecCCceEE
Confidence 55678999999999 8888999999999999999998877632 1 122467788776664 45554 56699
Q ss_pred EEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217 216 IWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (767)
Q Consensus 216 VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs 255 (767)
+||...+..++ ....|...|.+++..+++.+++.+|-
T Consensus 229 FWd~~~gTLiq---S~~~h~adVl~Lav~~~~d~vfsaGv 265 (691)
T KOG2048|consen 229 FWDSIFGTLIQ---SHSCHDADVLALAVADNEDRVFSAGV 265 (691)
T ss_pred EEcccCcchhh---hhhhhhcceeEEEEcCCCCeEEEccC
Confidence 99999998766 56778999999999999998877764
No 173
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.25 E-value=6.2e-11 Score=129.78 Aligned_cols=194 Identities=16% Similarity=0.154 Sum_probs=143.3
Q ss_pred CCCCCCCeEEEEECCC--CCeEEEEeCCCeEEEEECCCC----eEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEE
Q 004217 103 LSPPPRSTIAAAFSPD--GKTLASTHGDHTVKIIDCQTG----SCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRL 176 (767)
Q Consensus 103 L~gH~~sVtsVaFSpD--G~~LASgs~DGtVrVWDl~tg----~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrI 176 (767)
..-+.+.|++++|+|. -+++|+|..-|.|-+||+.+. .-+..+..|..+|.++.|+|.+...+++.|.||+|++
T Consensus 182 ~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~ 261 (498)
T KOG4328|consen 182 AKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRL 261 (498)
T ss_pred eEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeee
Confidence 4468899999999993 368899999999999999532 2356778899999999999999999999999999999
Q ss_pred EECCCCeEEEe--ec-CCCCeEEEEEcCCCCEEEEEEC-CcEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEE
Q 004217 177 WNASTAECIGS--RD-FYRPIASIAFHASGELLAVASG-HKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLL 252 (767)
Q Consensus 177 WDl~tg~~i~~--l~-h~~~VtsVafSPdG~~LAsgSd-d~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~Lla 252 (767)
-|+++...... .. ....+.++.|+.+...++.+.+ |...+||+++.+... ..+.-|...|++|+++|...++++
T Consensus 262 ~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~--~~~~lh~kKI~sv~~NP~~p~~la 339 (498)
T KOG4328|consen 262 QDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEY--ENLRLHKKKITSVALNPVCPWFLA 339 (498)
T ss_pred eeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccc--hhhhhhhcccceeecCCCCchhee
Confidence 99987543322 22 3345677888888777777764 559999999887522 345567889999999999999998
Q ss_pred EEe------eCCcCCCCcceeEeecCCCccCCCCeEEEecCCCCCCCceeeccCCCCCCceeeEEecCCCEEEEeecCC
Q 004217 253 TAE------VNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEH 325 (767)
Q Consensus 253 Sgs------vwdl~s~~~~~~l~t~sG~~~~p~~~v~l~~~~Ssd~~~L~sg~~~~slpil~psFSpDg~rIva~~~~~ 325 (767)
|++ +||++....+.. |.+. .-....++-...|||+|..|+.-..+.
T Consensus 340 T~s~D~T~kIWD~R~l~~K~s------------p~ls---------------t~~HrrsV~sAyFSPs~gtl~TT~~D~ 391 (498)
T KOG4328|consen 340 TASLDQTAKIWDLRQLRGKAS------------PFLS---------------TLPHRRSVNSAYFSPSGGTLLTTCQDN 391 (498)
T ss_pred ecccCcceeeeehhhhcCCCC------------ccee---------------cccccceeeeeEEcCCCCceEeeccCC
Confidence 887 788875333221 1111 011233444688999998877644433
No 174
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.25 E-value=9.6e-11 Score=125.93 Aligned_cols=161 Identities=18% Similarity=0.200 Sum_probs=132.9
Q ss_pred CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCC------CeEEEEEc-cCCCCcEEEEEccCCCcEEEEEeCCCeE
Q 004217 102 PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT------GSCLKVLH-GHRRTPWVVRFHPLNPTIIASGSLDHEV 174 (767)
Q Consensus 102 ~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~t------g~~l~~L~-gH~~~V~sLafsP~dg~lLaSgS~DGtV 174 (767)
.+.+|.+.|+++.||.++++|++|+.|..++||+++. .+++.... .|...|.+++|.. ...++++|..+++|
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~-~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDL-ENRFLYSGERWGTV 129 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEcc-CCeeEecCCCccee
Confidence 4779999999999999999999999999999999853 35554443 3568899999999 88999999999999
Q ss_pred EEEECCCCeEEEeecCCC---CeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeE
Q 004217 175 RLWNASTAECIGSRDFYR---PIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPL 250 (767)
Q Consensus 175 rIWDl~tg~~i~~l~h~~---~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~L 250 (767)
.+.|+.+.+.+..+.+.. .|+.+..+|..+.|++.++++ |.+||.+.......+.....-....+.+.|+|-...|
T Consensus 130 I~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~L 209 (609)
T KOG4227|consen 130 IKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPAL 209 (609)
T ss_pred EeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCcee
Confidence 999999999988877654 899999999999999888776 9999998776333233444456778999999998878
Q ss_pred EEEEe------eCCcCCCC
Q 004217 251 LLTAE------VNDLDSSE 263 (767)
Q Consensus 251 laSgs------vwdl~s~~ 263 (767)
+++.+ +||++...
T Consensus 210 i~~~~~~~G~~~~D~R~~~ 228 (609)
T KOG4227|consen 210 ILVNSETGGPNVFDRRMQA 228 (609)
T ss_pred EEeccccCCCCceeecccc
Confidence 77654 88887543
No 175
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.24 E-value=1.9e-09 Score=112.74 Aligned_cols=179 Identities=26% Similarity=0.387 Sum_probs=140.3
Q ss_pred eEEEEEEcCCCEEEEEeC-CCeEEEEeCCCC----CCCCCCCCeEEEEECCCCC-eEEEEeCCCeEEEEECCCCeEEE-E
Q 004217 72 QIFEAGRDARRGLASWVE-AESLHHLRPKYC----PLSPPPRSTIAAAFSPDGK-TLASTHGDHTVKIIDCQTGSCLK-V 144 (767)
Q Consensus 72 ~~~vA~sd~g~~LaSgs~-DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~-~LASgs~DGtVrVWDl~tg~~l~-~ 144 (767)
...+.+..++..++.+.. |+.+++|+.... .+.+|...|.+++|+|++. .+++++.|+.|++||...+..+. .
T Consensus 158 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~ 237 (466)
T COG2319 158 VTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRST 237 (466)
T ss_pred EEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeee
Confidence 445677778878888875 999999999863 4667999999999999998 55666999999999999888887 6
Q ss_pred EccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeE-EEee-cCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCC
Q 004217 145 LHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC-IGSR-DFYRPIASIAFHASGELLAVASGHK-LYIWRYNM 221 (767)
Q Consensus 145 L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~-i~~l-~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t 221 (767)
+.+|...+ ...|+| ++.++++++.|+.+++||++.... ...+ .|...+.++.|+|++..+++++.++ +.+||..+
T Consensus 238 ~~~~~~~~-~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 315 (466)
T COG2319 238 LSGHSDSV-VSSFSP-DGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLET 315 (466)
T ss_pred cCCCCcce-eEeECC-CCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCC
Confidence 88898876 448999 668888999999999999997664 4443 6788999999999888888876545 99999887
Q ss_pred CccccCCeEEecCCCCeEEEEEccCCCeEEEE
Q 004217 222 REETSSPRIVLRTRRSLRAVHFHPHAAPLLLT 253 (767)
Q Consensus 222 ~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaS 253 (767)
........ ...|...+..+.|.+++..++.+
T Consensus 316 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 346 (466)
T COG2319 316 GKLLSSLT-LKGHEGPVSSLSFSPDGSLLVSG 346 (466)
T ss_pred CceEEEee-ecccCCceEEEEECCCCCEEEEe
Confidence 76544111 23677789999994332445444
No 176
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.24 E-value=6.7e-10 Score=112.96 Aligned_cols=142 Identities=18% Similarity=0.260 Sum_probs=99.6
Q ss_pred EEEEECCCCCeEEEEeC---C-------CeEEEEECCC-CeEEEEEcc-CCCCcEEEEEccCCCcEEEE--EeCCCeEEE
Q 004217 111 IAAAFSPDGKTLASTHG---D-------HTVKIIDCQT-GSCLKVLHG-HRRTPWVVRFHPLNPTIIAS--GSLDHEVRL 176 (767)
Q Consensus 111 tsVaFSpDG~~LASgs~---D-------GtVrVWDl~t-g~~l~~L~g-H~~~V~sLafsP~dg~lLaS--gS~DGtVrI 176 (767)
..+.|+++|++|+.-.. | +...||.++. +.....+.- ..+.|.+++|+| +++.|+. |..++.|.+
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP-~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSP-NGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECc-CCCEEEEEEccCCcccEE
Confidence 45788898887755433 1 2345555422 233344432 345699999999 6666544 456789999
Q ss_pred EECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEEC----CcEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEE
Q 004217 177 WNASTAECIGSRDFYRPIASIAFHASGELLAVASG----HKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLL 252 (767)
Q Consensus 177 WDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSd----d~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~Lla 252 (767)
||++ ++.+..+. ...++.+.|+|+|++|++++- +.|.+||+++.+.+. ...| ..++.++|+|||+++++
T Consensus 88 yd~~-~~~i~~~~-~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~----~~~~-~~~t~~~WsPdGr~~~t 160 (194)
T PF08662_consen 88 YDVK-GKKIFSFG-TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKIS----TFEH-SDATDVEWSPDGRYLAT 160 (194)
T ss_pred EcCc-ccEeEeec-CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEee----cccc-CcEEEEEEcCCCCEEEE
Confidence 9997 66666665 467788999999999999872 339999999776544 2233 45789999999999998
Q ss_pred EEeeCCcC
Q 004217 253 TAEVNDLD 260 (767)
Q Consensus 253 Sgsvwdl~ 260 (767)
+...|.++
T Consensus 161 a~t~~r~~ 168 (194)
T PF08662_consen 161 ATTSPRLR 168 (194)
T ss_pred EEecccee
Confidence 87766555
No 177
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.24 E-value=3.5e-09 Score=114.99 Aligned_cols=172 Identities=15% Similarity=0.087 Sum_probs=116.8
Q ss_pred EeCCCeEEEEeCCC-CCC-----CCCCCCeEEEEECCCCCeEEEEe-CCCeEEEEECC-CCeE--EEEEccCCCCcEEEE
Q 004217 87 WVEAESLHHLRPKY-CPL-----SPPPRSTIAAAFSPDGKTLASTH-GDHTVKIIDCQ-TGSC--LKVLHGHRRTPWVVR 156 (767)
Q Consensus 87 gs~DgsIrlWd~~t-~~L-----~gH~~sVtsVaFSpDG~~LASgs-~DGtVrVWDl~-tg~~--l~~L~gH~~~V~sLa 156 (767)
...++.|.+|++.+ +++ ..+.+....++++||+++|++++ .++.|.+|+++ +++. +.... ..+....+.
T Consensus 8 ~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~ 86 (330)
T PRK11028 8 SPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHIS 86 (330)
T ss_pred cCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEE
Confidence 35688899999853 221 13446688899999999987765 47889999997 3432 22222 334577899
Q ss_pred EccCCCcEEEEEe-CCCeEEEEECCC-C---eEEEeecCCCCeEEEEEcCCCCEEEEEEC--CcEEEEEcCCCccccC--
Q 004217 157 FHPLNPTIIASGS-LDHEVRLWNAST-A---ECIGSRDFYRPIASIAFHASGELLAVASG--HKLYIWRYNMREETSS-- 227 (767)
Q Consensus 157 fsP~dg~lLaSgS-~DGtVrIWDl~t-g---~~i~~l~h~~~VtsVafSPdG~~LAsgSd--d~V~VWDl~t~~~~~~-- 227 (767)
|+| +++++++++ .++.|.+||+.+ + +.+..+........++|+|+|++++++.. +.|.+||+++...+..
T Consensus 87 ~~~-~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~ 165 (330)
T PRK11028 87 TDH-QGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQE 165 (330)
T ss_pred ECC-CCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccC
Confidence 999 777777665 489999999974 2 22333334445678899999998877763 4599999986433221
Q ss_pred -CeEEecCCCCeEEEEEccCCCeEEEEEe------eCCcC
Q 004217 228 -PRIVLRTRRSLRAVHFHPHAAPLLLTAE------VNDLD 260 (767)
Q Consensus 228 -~~~l~~h~~~VtsVaFSPDG~~LlaSgs------vwdl~ 260 (767)
...........+.+.|+|||++++++.. +|+++
T Consensus 166 ~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~ 205 (330)
T PRK11028 166 PAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLK 205 (330)
T ss_pred CCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEe
Confidence 0011122345678999999998877654 66765
No 178
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.24 E-value=1.1e-09 Score=124.13 Aligned_cols=202 Identities=16% Similarity=0.131 Sum_probs=126.7
Q ss_pred CeEEEEeCCCC---CCCCCCCCeEEEEECCCCCeEEEEeCC---CeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcE
Q 004217 91 ESLHHLRPKYC---PLSPPPRSTIAAAFSPDGKTLASTHGD---HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTI 164 (767)
Q Consensus 91 gsIrlWd~~t~---~L~gH~~sVtsVaFSpDG~~LASgs~D---GtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~l 164 (767)
..|.++|.... ++..+...+.+.+|||||+.|+..+.+ ..|.+||+.+++... +....+.+....|+| +++.
T Consensus 176 ~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SP-DG~~ 253 (427)
T PRK02889 176 YQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSP-DGRT 253 (427)
T ss_pred cEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECC-CCCE
Confidence 35666666433 356778889999999999999887653 469999999887543 333445567899999 6665
Q ss_pred E-EEEeCCCeEEEEE--CCCCeEEEeecCCCCeEEEEEcCCCCEEEEEEC--CcEEEEE--cCCCccccCCeEEecCCCC
Q 004217 165 I-ASGSLDHEVRLWN--ASTAECIGSRDFYRPIASIAFHASGELLAVASG--HKLYIWR--YNMREETSSPRIVLRTRRS 237 (767)
Q Consensus 165 L-aSgS~DGtVrIWD--l~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSd--d~V~VWD--l~t~~~~~~~~~l~~h~~~ 237 (767)
| ++.+.++...||. +.++.......+........|+|||++|+..++ +...||. +.+++.. .+......
T Consensus 254 la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~----~lt~~g~~ 329 (427)
T PRK02889 254 LAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ----RVTFTGSY 329 (427)
T ss_pred EEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE----EEecCCCC
Confidence 5 4677788766665 455554333334445667889999998887774 2355554 4444321 22222334
Q ss_pred eEEEEEccCCCeEEEEEeeCCcCCCCcceeEeecCCCccCCCCeEEEecCCCCCCCceeeccCCCCCCceeeEEecCCCE
Q 004217 238 LRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDER 317 (767)
Q Consensus 238 VtsVaFSPDG~~LlaSgsvwdl~s~~~~~~l~t~sG~~~~p~~~v~l~~~~Ssd~~~L~sg~~~~slpil~psFSpDg~r 317 (767)
.....|+|||++|+.++.... . ..+++++...+....+..+. ....|.|+|||+.
T Consensus 330 ~~~~~~SpDG~~Ia~~s~~~g----~----------------~~I~v~d~~~g~~~~lt~~~-----~~~~p~~spdg~~ 384 (427)
T PRK02889 330 NTSPRISPDGKLLAYISRVGG----A----------------FKLYVQDLATGQVTALTDTT-----RDESPSFAPNGRY 384 (427)
T ss_pred cCceEECCCCCEEEEEEccCC----c----------------EEEEEEECCCCCeEEccCCC-----CccCceECCCCCE
Confidence 456899999998887654210 0 12344443333222222110 1135899999999
Q ss_pred EEEeec
Q 004217 318 ISLQHT 323 (767)
Q Consensus 318 Iva~~~ 323 (767)
|+....
T Consensus 385 l~~~~~ 390 (427)
T PRK02889 385 ILYATQ 390 (427)
T ss_pred EEEEEe
Confidence 998554
No 179
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.23 E-value=1e-09 Score=111.66 Aligned_cols=112 Identities=16% Similarity=0.365 Sum_probs=91.4
Q ss_pred CCCCeEEEEECCCCCeEEEEe--CCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeC---CCeEEEEECC
Q 004217 106 PPRSTIAAAFSPDGKTLASTH--GDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSL---DHEVRLWNAS 180 (767)
Q Consensus 106 H~~sVtsVaFSpDG~~LASgs--~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~---DGtVrIWDl~ 180 (767)
..+.|.+++|+|+|+.|+... .+..|.+||++ ++.+..+. ...+..+.|+| ++++++.++. .|.|.+||++
T Consensus 58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~~ 133 (194)
T PF08662_consen 58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDVR 133 (194)
T ss_pred CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECC-CCCEEEEEEccCCCcEEEEEECC
Confidence 345699999999999876653 56799999997 66666664 56778999999 8999998874 4679999999
Q ss_pred CCeEEEeecCCCCeEEEEEcCCCCEEEEEE-------CCcEEEEEcCCC
Q 004217 181 TAECIGSRDFYRPIASIAFHASGELLAVAS-------GHKLYIWRYNMR 222 (767)
Q Consensus 181 tg~~i~~l~h~~~VtsVafSPdG~~LAsgS-------dd~V~VWDl~t~ 222 (767)
+.+.+....+.. ++.++|+|+|++|+++. +++++||++...
T Consensus 134 ~~~~i~~~~~~~-~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 134 KKKKISTFEHSD-ATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred CCEEeeccccCc-EEEEEEcCCCCEEEEEEeccceeccccEEEEEecCe
Confidence 999998887765 68999999999999886 345999998643
No 180
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.22 E-value=6e-10 Score=119.75 Aligned_cols=160 Identities=19% Similarity=0.225 Sum_probs=134.3
Q ss_pred ccceecCCcceEEEEEEcCCCEEEEEeCCCeEEEEeCCCCCC-------CCCCCCeEEEEECCCCCeEEEEe--CCCeEE
Q 004217 62 TARKCSGSFSQIFEAGRDARRGLASWVEAESLHHLRPKYCPL-------SPPPRSTIAAAFSPDGKTLASTH--GDHTVK 132 (767)
Q Consensus 62 ~~~~~~~s~s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~L-------~gH~~sVtsVaFSpDG~~LASgs--~DGtVr 132 (767)
....|...+...++++.-++++|+..-++. |.++|++..++ ..+...+.++.++.++.+||.=+ ..|.|.
T Consensus 78 ~~~ICe~~fpt~IL~VrmNr~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~ 156 (391)
T KOG2110|consen 78 KTTICEIFFPTSILAVRMNRKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVV 156 (391)
T ss_pred CceEEEEecCCceEEEEEccceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEE
Confidence 345666666677777777999999888776 99999988642 25677788888888888998643 368999
Q ss_pred EEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCe-EEEEECCCCeEEEeecC---CCCeEEEEEcCCCCEEEE
Q 004217 133 IIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHE-VRLWNASTAECIGSRDF---YRPIASIAFHASGELLAV 208 (767)
Q Consensus 133 VWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGt-VrIWDl~tg~~i~~l~h---~~~VtsVafSPdG~~LAs 208 (767)
|||+.+-+.+..+..|++.+-+++|++ +|.+||++|..|+ ||++.+.+|+.+.++.. ...|.+++|+|++++|++
T Consensus 157 l~d~~nl~~v~~I~aH~~~lAalafs~-~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~ 235 (391)
T KOG2110|consen 157 LFDTINLQPVNTINAHKGPLAALAFSP-DGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAA 235 (391)
T ss_pred EEEcccceeeeEEEecCCceeEEEECC-CCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEE
Confidence 999999999999999999999999999 9999999999997 79999999999988763 346889999999999998
Q ss_pred EECCc-EEEEEcCCCc
Q 004217 209 ASGHK-LYIWRYNMRE 223 (767)
Q Consensus 209 gSdd~-V~VWDl~t~~ 223 (767)
.++.. |+||.+.+..
T Consensus 236 sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 236 SSNTETVHIFKLEKVS 251 (391)
T ss_pred ecCCCeEEEEEecccc
Confidence 88654 9999987654
No 181
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.22 E-value=1.8e-10 Score=127.83 Aligned_cols=162 Identities=15% Similarity=0.201 Sum_probs=125.7
Q ss_pred CCEEEEEeCCCeEEEEeCCCC---CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEE
Q 004217 81 RRGLASWVEAESLHHLRPKYC---PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRF 157 (767)
Q Consensus 81 g~~LaSgs~DgsIrlWd~~t~---~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLaf 157 (767)
...++..+.||++.+.+-... .+..|.+.|.+-.|+|||.-|++++.||.|++|. ++|-...++......|.|++|
T Consensus 75 ~d~~~i~s~DGkf~il~k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W 153 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILNKSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARW 153 (737)
T ss_pred cceEEEEcCCceEEEecccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEE
Confidence 355777888999988876543 4679999999999999999999999999999998 566555555556678999999
Q ss_pred ccCCCcEEEEEeCCCeEEEEECCC-CeEEEeecCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccCCeEEecCC
Q 004217 158 HPLNPTIIASGSLDHEVRLWNAST-AECIGSRDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTR 235 (767)
Q Consensus 158 sP~dg~lLaSgS~DGtVrIWDl~t-g~~i~~l~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~ 235 (767)
.|+..+.+++.+ +.+.|=-+.. .+.++-..|.+-|.++.|++...++++|+.|- .+|||...... .....|.
T Consensus 154 ~p~S~~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~L----f~S~~~e 227 (737)
T KOG1524|consen 154 APNSNSIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANL----FTSAAEE 227 (737)
T ss_pred CCCCCceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCccc----ccCChhc
Confidence 994445555433 3344444443 34556667999999999999999999999776 99999765432 3456789
Q ss_pred CCeEEEEEccCCCe
Q 004217 236 RSLRAVHFHPHAAP 249 (767)
Q Consensus 236 ~~VtsVaFSPDG~~ 249 (767)
.+|++++|+||..+
T Consensus 228 y~ITSva~npd~~~ 241 (737)
T KOG1524|consen 228 YAITSVAFNPEKDY 241 (737)
T ss_pred cceeeeeeccccce
Confidence 99999999999443
No 182
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.22 E-value=1.6e-10 Score=122.19 Aligned_cols=147 Identities=17% Similarity=0.258 Sum_probs=122.0
Q ss_pred CCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCe---EEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECC-CC
Q 004217 107 PRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS---CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAS-TA 182 (767)
Q Consensus 107 ~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~---~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~-tg 182 (767)
..+|+|.+|++|+..+|.+-....|.||.....+ ..++++.|...|+.|+|+| ..+.|++|+.|..-.+|... .+
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap-~snrIvtcs~drnayVw~~~~~~ 88 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAP-KSNRIVTCSHDRNAYVWTQPSGG 88 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecC-CCCceeEccCCCCccccccCCCC
Confidence 4689999999999999999999999999987654 6788999999999999999 88999999999999999984 44
Q ss_pred eEEE---eecCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccC-CeEEecCCCCeEEEEEccCCCeEEEEE
Q 004217 183 ECIG---SRDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSS-PRIVLRTRRSLRAVHFHPHAAPLLLTA 254 (767)
Q Consensus 183 ~~i~---~l~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~-~~~l~~h~~~VtsVaFSPDG~~LlaSg 254 (767)
+-.. .+.++..++++.|+|.++.||+|+..+ |.||-++..+.... ..+...+++.|++++|+|++-.+++++
T Consensus 89 ~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs 165 (361)
T KOG1523|consen 89 TWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGS 165 (361)
T ss_pred eeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccc
Confidence 4333 256899999999999999999999777 99998887665431 123345688899999999988555544
No 183
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.22 E-value=2.6e-09 Score=119.17 Aligned_cols=158 Identities=15% Similarity=0.150 Sum_probs=114.7
Q ss_pred eEEEEeCCCC---CCCCCCCCeEEEEECCCCCeEEEEeCC---CeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEE
Q 004217 92 SLHHLRPKYC---PLSPPPRSTIAAAFSPDGKTLASTHGD---HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTII 165 (767)
Q Consensus 92 sIrlWd~~t~---~L~gH~~sVtsVaFSpDG~~LASgs~D---GtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lL 165 (767)
.|.++|.... ++..+...+...+|+|||++|+.+..+ ..|++||+.+++... +..+...+..++|+| +++.|
T Consensus 171 ~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~sp-Dg~~l 248 (417)
T TIGR02800 171 ELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSP-DGSKL 248 (417)
T ss_pred eEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECC-CCCEE
Confidence 5777777543 355677789999999999999887654 479999999886443 334556677899999 66655
Q ss_pred -EEEeCCC--eEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEECC----cEEEEEcCCCccccCCeEEecCCCCe
Q 004217 166 -ASGSLDH--EVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGH----KLYIWRYNMREETSSPRIVLRTRRSL 238 (767)
Q Consensus 166 -aSgS~DG--tVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSdd----~V~VWDl~t~~~~~~~~~l~~h~~~V 238 (767)
++.+.++ .|.+||+.+++......+........|+|+|++|+..++. .|++||+.+++.. .+..+...+
T Consensus 249 ~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~----~l~~~~~~~ 324 (417)
T TIGR02800 249 AVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR----RLTFRGGYN 324 (417)
T ss_pred EEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE----EeecCCCCc
Confidence 4555544 5889999888765555555555678999999988877642 2888888766532 234455667
Q ss_pred EEEEEccCCCeEEEEEe
Q 004217 239 RAVHFHPHAAPLLLTAE 255 (767)
Q Consensus 239 tsVaFSPDG~~LlaSgs 255 (767)
..+.|+|||++++.+..
T Consensus 325 ~~~~~spdg~~i~~~~~ 341 (417)
T TIGR02800 325 ASPSWSPDGDLIAFVHR 341 (417)
T ss_pred cCeEECCCCCEEEEEEc
Confidence 88999999998887764
No 184
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.22 E-value=9.4e-11 Score=132.34 Aligned_cols=138 Identities=23% Similarity=0.366 Sum_probs=117.3
Q ss_pred CeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEee
Q 004217 109 STIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR 188 (767)
Q Consensus 109 sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l 188 (767)
.|..++|-|||..|+.+..| .+.|||...|..+.++++|++.|++++|+. +++.|+||+.|+.|.+|.-+- +-+..+
T Consensus 14 ci~d~afkPDGsqL~lAAg~-rlliyD~ndG~llqtLKgHKDtVycVAys~-dGkrFASG~aDK~VI~W~~kl-EG~LkY 90 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGS-RLLVYDTSDGTLLQPLKGHKDTVYCVAYAK-DGKRFASGSADKSVIIWTSKL-EGILKY 90 (1081)
T ss_pred chheeEECCCCceEEEecCC-EEEEEeCCCcccccccccccceEEEEEEcc-CCceeccCCCceeEEEecccc-cceeee
Confidence 79999999999998887655 799999999999999999999999999999 999999999999999997542 233446
Q ss_pred cCCCCeEEEEEcCCCCEEEEEECCcEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 004217 189 DFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA 254 (767)
Q Consensus 189 ~h~~~VtsVafSPdG~~LAsgSdd~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSg 254 (767)
.|.+.|.|+.|+|....|++++-...-+|......... ......|.+.+|..||++++.+-
T Consensus 91 SH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K-----~kss~R~~~CsWtnDGqylalG~ 151 (1081)
T KOG1538|consen 91 SHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSK-----HKSSSRIICCSWTNDGQYLALGM 151 (1081)
T ss_pred ccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHh-----hhhheeEEEeeecCCCcEEEEec
Confidence 79999999999999999999997778899876554322 22345788999999999887654
No 185
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.22 E-value=5.7e-10 Score=123.39 Aligned_cols=213 Identities=15% Similarity=0.181 Sum_probs=154.0
Q ss_pred ceecccccccccC--CCccCcceeecccccceecC-----CcceEEEEEEcCCCEEEEEeCCCeEEEEeCCCC---CCCC
Q 004217 36 RNVFGLLAQREVA--PRTKHSSKRLLGETARKCSG-----SFSQIFEAGRDARRGLASWVEAESLHHLRPKYC---PLSP 105 (767)
Q Consensus 36 rnVf~~~~kre~~--~~~~~~sk~~wd~~~~~~~~-----s~s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~---~L~g 105 (767)
..||.+...++-. ...+.-....|+++...... .+....... +++..|+.|...+.|..-.++.+ ...+
T Consensus 288 ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~-e~~~di~vGTtrN~iL~Gt~~~~f~~~v~g 366 (626)
T KOG2106|consen 288 GGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVA-EGKGDILVGTTRNFILQGTLENGFTLTVQG 366 (626)
T ss_pred CceEEEEEecCccEeecCccceEEeccccccccccccCchhcCCeeEEe-cCCCcEEEeeccceEEEeeecCCceEEEEe
Confidence 3455554444321 13333445567766543321 122333333 34444777887887777776655 4569
Q ss_pred CCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEE
Q 004217 106 PPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECI 185 (767)
Q Consensus 106 H~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i 185 (767)
|.+....++..|+..++++++.|+.|++|+ ..+.+.+.. -..++.++.|+| .+ .++.|...|...+.|.++...+
T Consensus 367 h~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhp-sg-~va~Gt~~G~w~V~d~e~~~lv 441 (626)
T KOG2106|consen 367 HGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHP-SG-VVAVGTATGRWFVLDTETQDLV 441 (626)
T ss_pred cccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccC-cc-eEEEeeccceEEEEecccceeE
Confidence 999999999999999999999999999999 444443332 356788999999 55 9999999999999999998887
Q ss_pred EeecCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217 186 GSRDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (767)
Q Consensus 186 ~~l~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs 255 (767)
.......++++++|+|+|.+||+|+.|. |+||-+....... ...-.-+...|+.+.||+|++++.+-+.
T Consensus 442 ~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y-~r~~k~~gs~ithLDwS~Ds~~~~~~S~ 511 (626)
T KOG2106|consen 442 TIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKY-SRVGKCSGSPITHLDWSSDSQFLVSNSG 511 (626)
T ss_pred EEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEE-EEeeeecCceeEEeeecCCCceEEeccC
Confidence 7766689999999999999999999665 9999987655432 1122234589999999999998877555
No 186
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.21 E-value=4e-11 Score=142.73 Aligned_cols=181 Identities=17% Similarity=0.150 Sum_probs=142.6
Q ss_pred eEEEEEEc-CCCEEEEEeCCCeEEEEeCCCCCCC------CCCCCeEEEEECC-CCCeEEEEeCCCeEEEEECCCCeEEE
Q 004217 72 QIFEAGRD-ARRGLASWVEAESLHHLRPKYCPLS------PPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCLK 143 (767)
Q Consensus 72 ~~~vA~sd-~g~~LaSgs~DgsIrlWd~~t~~L~------gH~~sVtsVaFSp-DG~~LASgs~DGtVrVWDl~tg~~l~ 143 (767)
++-+-+.. .+..|++|..||.|.+||+..-+.. ...+.|.+++|+. ....|++++.+|.+.|||++..+.+-
T Consensus 119 V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii 198 (1049)
T KOG0307|consen 119 VLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPII 198 (1049)
T ss_pred eeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCccc
Confidence 33344443 4559999999999999999874221 2456799999998 56678999999999999999988887
Q ss_pred EEccCCC--CcEEEEEccCCCcEEEEEeCCC---eEEEEECCC-CeEEEee-cCCCCeEEEEEcCCC-CEEEEEEC-CcE
Q 004217 144 VLHGHRR--TPWVVRFHPLNPTIIASGSLDH---EVRLWNAST-AECIGSR-DFYRPIASIAFHASG-ELLAVASG-HKL 214 (767)
Q Consensus 144 ~L~gH~~--~V~sLafsP~dg~lLaSgS~DG---tVrIWDl~t-g~~i~~l-~h~~~VtsVafSPdG-~~LAsgSd-d~V 214 (767)
.+..|.+ .+..++|||++...+++++.|. .|.+||+|. ...++++ .|...|.++.|++.+ ++|++++. ++|
T Consensus 199 ~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~i 278 (1049)
T KOG0307|consen 199 KLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRI 278 (1049)
T ss_pred ccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCe
Confidence 7766554 4778999998888888888764 699999985 3456666 599999999999988 67777774 459
Q ss_pred EEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217 215 YIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (767)
Q Consensus 215 ~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs 255 (767)
.+|+.++++.+. .+....+++..+.|+|...-+++.++
T Consensus 279 i~wN~~tgEvl~---~~p~~~nW~fdv~w~pr~P~~~A~as 316 (1049)
T KOG0307|consen 279 ICWNPNTGEVLG---ELPAQGNWCFDVQWCPRNPSVMAAAS 316 (1049)
T ss_pred eEecCCCceEee---ecCCCCcceeeeeecCCCcchhhhhe
Confidence 999999998765 45556789999999998876666554
No 187
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.20 E-value=2.2e-10 Score=119.68 Aligned_cols=147 Identities=16% Similarity=0.258 Sum_probs=118.9
Q ss_pred CCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeE-EEEE-----ccCCCCcEEEEEcc-CCCcEEEEEeCCCeEEEE
Q 004217 105 PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSC-LKVL-----HGHRRTPWVVRFHP-LNPTIIASGSLDHEVRLW 177 (767)
Q Consensus 105 gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~-l~~L-----~gH~~~V~sLafsP-~dg~lLaSgS~DGtVrIW 177 (767)
.+-+.|.|+.|.|++..|++-. |..|.+|+++.+.. +..+ .+|+...++-+|+| .+++.+++. .|+++..|
T Consensus 121 eavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~ 198 (370)
T KOG1007|consen 121 EAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFW 198 (370)
T ss_pred HHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEE
Confidence 4566899999999999998876 78999999988765 3333 23566788889999 456666654 69999999
Q ss_pred ECCCCeEEEeec--CCCCeEEEEEcCCCC-EEEEEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEE
Q 004217 178 NASTAECIGSRD--FYRPIASIAFHASGE-LLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLT 253 (767)
Q Consensus 178 Dl~tg~~i~~l~--h~~~VtsVafSPdG~-~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaS 253 (767)
|+++.++...++ |...|..+.|+|+-+ +|++++|++ |+|||.+..+. +.+.+.+|..+|.+|.|+|--..|+.+
T Consensus 199 D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~--pv~el~~HsHWvW~VRfn~~hdqLiLs 276 (370)
T KOG1007|consen 199 DLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKF--PVQELPGHSHWVWAVRFNPEHDQLILS 276 (370)
T ss_pred EccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCc--cccccCCCceEEEEEEecCccceEEEe
Confidence 999988877764 788899999999987 677777766 99999998775 446788999999999999987777776
Q ss_pred Ee
Q 004217 254 AE 255 (767)
Q Consensus 254 gs 255 (767)
++
T Consensus 277 ~~ 278 (370)
T KOG1007|consen 277 GG 278 (370)
T ss_pred cC
Confidence 65
No 188
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.20 E-value=6.4e-10 Score=125.93 Aligned_cols=175 Identities=15% Similarity=0.089 Sum_probs=121.1
Q ss_pred eEEEEEEcCCCEEEEEeCC---CeEEEEeCCCCC---CCCCCCCeEEEEECCCCCeEEEEe-CCCeEEEE--ECCCCeEE
Q 004217 72 QIFEAGRDARRGLASWVEA---ESLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLASTH-GDHTVKII--DCQTGSCL 142 (767)
Q Consensus 72 ~~~vA~sd~g~~LaSgs~D---gsIrlWd~~t~~---L~gH~~sVtsVaFSpDG~~LASgs-~DGtVrVW--Dl~tg~~l 142 (767)
.....++.+++.|+..+.+ ..|.+||+.+++ +....+....++|+|||++|+.+. .+|.+.|| |+.+++ +
T Consensus 206 v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~-~ 284 (429)
T PRK01742 206 LMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT-P 284 (429)
T ss_pred cccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCCC-e
Confidence 4456677888888876543 369999998763 333333455789999999988765 57765554 666665 4
Q ss_pred EEEccCCCCcEEEEEccCCCcEEEE-EeCCCeEEEEECCCC-eEEEeecCCCCeEEEEEcCCCCEEEEEECCcEEEEEcC
Q 004217 143 KVLHGHRRTPWVVRFHPLNPTIIAS-GSLDHEVRLWNASTA-ECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYN 220 (767)
Q Consensus 143 ~~L~gH~~~V~sLafsP~dg~lLaS-gS~DGtVrIWDl~tg-~~i~~l~h~~~VtsVafSPdG~~LAsgSdd~V~VWDl~ 220 (767)
..+..+...+....|+| +++.|+. ...++...||++... .....+.+.. ....|+|+|++|+..+.+.+.+||+.
T Consensus 285 ~~lt~~~~~~~~~~wSp-DG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~--~~~~~SpDG~~ia~~~~~~i~~~Dl~ 361 (429)
T PRK01742 285 SQLTSGAGNNTEPSWSP-DGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG--YSAQISADGKTLVMINGDNVVKQDLT 361 (429)
T ss_pred EeeccCCCCcCCEEECC-CCCEEEEEECCCCCceEEEEECCCCCeEEecCCC--CCccCCCCCCEEEEEcCCCEEEEECC
Confidence 55666777788999999 7776554 446788888876532 2223333333 45789999999998887788889998
Q ss_pred CCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217 221 MREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (767)
Q Consensus 221 t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs 255 (767)
+++... +..+ ....++.|+|||+.|+.++.
T Consensus 362 ~g~~~~----lt~~-~~~~~~~~sPdG~~i~~~s~ 391 (429)
T PRK01742 362 SGSTEV----LSST-FLDESPSISPNGIMIIYSST 391 (429)
T ss_pred CCCeEE----ecCC-CCCCCceECCCCCEEEEEEc
Confidence 876432 1111 13457889999998887764
No 189
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.18 E-value=3.4e-10 Score=125.78 Aligned_cols=165 Identities=16% Similarity=0.142 Sum_probs=133.8
Q ss_pred EEEEEcCCCEEEEEeCCCeEEEEeCCCC---CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCC
Q 004217 74 FEAGRDARRGLASWVEAESLHHLRPKYC---PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRR 150 (767)
Q Consensus 74 ~vA~sd~g~~LaSgs~DgsIrlWd~~t~---~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~ 150 (767)
+-..+.+|..|++.++||.|++|.-... .+.....+|.|++|.|+.+.++.|-. +.+.|=-+.-...+-..+.|.+
T Consensus 109 ~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g-~h~~IKpL~~n~k~i~WkAHDG 187 (737)
T KOG1524|consen 109 SGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQG-GHISIKPLAANSKIIRWRAHDG 187 (737)
T ss_pred hcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEecC-CeEEEeecccccceeEEeccCc
Confidence 3446679999999999999999997543 35566778999999998777766554 4667767776666777899999
Q ss_pred CcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEECCcEEEEEcCCCccccCCeE
Q 004217 151 TPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRI 230 (767)
Q Consensus 151 ~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSdd~V~VWDl~t~~~~~~~~~ 230 (767)
-|.++.|++ ..+++++|++|-..++||-........-.|..+|++++|.|+ +.++.++.+.+++=
T Consensus 188 iiL~~~W~~-~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~nt~R~~------------- 252 (737)
T KOG1524|consen 188 LVLSLSWST-QSNIIASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPE-KDYLLWSYNTARFS------------- 252 (737)
T ss_pred EEEEeecCc-cccceeecCCceeEEeecccCcccccCChhccceeeeeeccc-cceeeeeeeeeeec-------------
Confidence 999999999 899999999999999999876666666779999999999999 88888887776621
Q ss_pred EecCCCCeEEEEEccCCCeEEEEEe
Q 004217 231 VLRTRRSLRAVHFHPHAAPLLLTAE 255 (767)
Q Consensus 231 l~~h~~~VtsVaFSPDG~~LlaSgs 255 (767)
....+.|..++||+||..+..+++
T Consensus 253 -~p~~GSifnlsWS~DGTQ~a~gt~ 276 (737)
T KOG1524|consen 253 -SPRVGSIFNLSWSADGTQATCGTS 276 (737)
T ss_pred -CCCccceEEEEEcCCCceeecccc
Confidence 123467899999999997766554
No 190
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.18 E-value=8.5e-10 Score=116.83 Aligned_cols=215 Identities=14% Similarity=0.120 Sum_probs=150.0
Q ss_pred EEEEcCCCEEEEEeCCCeEEEEeCCCCC----------CC-------CCCCCeEEEEEC-------CCCCeEEEEeCCCe
Q 004217 75 EAGRDARRGLASWVEAESLHHLRPKYCP----------LS-------PPPRSTIAAAFS-------PDGKTLASTHGDHT 130 (767)
Q Consensus 75 vA~sd~g~~LaSgs~DgsIrlWd~~t~~----------L~-------gH~~sVtsVaFS-------pDG~~LASgs~DGt 130 (767)
..++.+|..|.+-++|+.+++|++...- +. .....|..-+|- |+-.++++.+.|.-
T Consensus 55 ckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~P 134 (406)
T KOG2919|consen 55 CKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQP 134 (406)
T ss_pred ceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccCc
Confidence 3466899999999999999999985421 11 123457777775 67789999999999
Q ss_pred EEEEECCCCeEEEEEcc--CCC---CcEEEEEccCCCcEEEEEeCCCeEEEEEC-CCCeEEEe--------ecCCCCeEE
Q 004217 131 VKIIDCQTGSCLKVLHG--HRR---TPWVVRFHPLNPTIIASGSLDHEVRLWNA-STAECIGS--------RDFYRPIAS 196 (767)
Q Consensus 131 VrVWDl~tg~~l~~L~g--H~~---~V~sLafsP~dg~lLaSgS~DGtVrIWDl-~tg~~i~~--------l~h~~~Vts 196 (767)
|++||.-+|+....+.+ |.+ ...+++|+| |+..|+.| ...+|++||+ +.|.-... +...+-+.+
T Consensus 135 Ih~wdaftG~lraSy~~ydh~de~taAhsL~Fs~-DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc 212 (406)
T KOG2919|consen 135 IHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSP-DGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISC 212 (406)
T ss_pred eeeeeccccccccchhhhhhHHhhhhheeEEecC-CCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccceeee
Confidence 99999999998777654 333 346899999 88888765 6788999999 44442211 224567899
Q ss_pred EEEcCCCC-EEEEEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe------eCCcCCCCcceeE
Q 004217 197 IAFHASGE-LLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE------VNDLDSSESSLTL 268 (767)
Q Consensus 197 VafSPdG~-~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs------vwdl~s~~~~~~l 268 (767)
++|+|... .+++|+.+. +-||.-.....+ ..+.+|.+.|+.++|++||+.|++.+. .||++... ..+
T Consensus 213 ~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl---~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~--~pv 287 (406)
T KOG2919|consen 213 FAFSPMDSKTLAVGSYGQRVGIYNDDGRRPL---QLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSR--DPV 287 (406)
T ss_pred eeccCCCCcceeeecccceeeeEecCCCCce---eeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhcc--chh
Confidence 99999765 899998655 555554455543 377799999999999999998888776 88888432 233
Q ss_pred eecCCCccCCCCeEEEecCCCCCCCceeec
Q 004217 269 ATSPGYWRYPPPVICMAGAHSSSHPGLAEE 298 (767)
Q Consensus 269 ~t~sG~~~~p~~~v~l~~~~Ssd~~~L~sg 298 (767)
..+.+|..-..-.|.|.. .++...|++|
T Consensus 288 ~~L~rhv~~TNQRI~FDl--d~~~~~LasG 315 (406)
T KOG2919|consen 288 YALERHVGDTNQRILFDL--DPKGEILASG 315 (406)
T ss_pred hhhhhhccCccceEEEec--CCCCceeecc
Confidence 333444332223344433 3344455555
No 191
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.17 E-value=5.7e-09 Score=118.34 Aligned_cols=177 Identities=15% Similarity=0.072 Sum_probs=121.2
Q ss_pred eEEEEEEcCCCEEEEEe---CCCeEEEEeCCCCC---CCCCCCCeEEEEECCCCCeEEEE-eCCC--eEEEEECCCCeEE
Q 004217 72 QIFEAGRDARRGLASWV---EAESLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLAST-HGDH--TVKIIDCQTGSCL 142 (767)
Q Consensus 72 ~~~vA~sd~g~~LaSgs---~DgsIrlWd~~t~~---L~gH~~sVtsVaFSpDG~~LASg-s~DG--tVrVWDl~tg~~l 142 (767)
.....++.+|+.|+..+ .+..|.+|++.+++ +....+.+..++|||||+.|+.. +.++ .|++||+++++..
T Consensus 201 ~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~ 280 (429)
T PRK03629 201 LMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR 280 (429)
T ss_pred eeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE
Confidence 44566777888877543 24568999988763 33444556679999999988865 3344 5999999988754
Q ss_pred EEEccCCCCcEEEEEccCCCcEEEEEeCC-Ce--EEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEEC-C---cEE
Q 004217 143 KVLHGHRRTPWVVRFHPLNPTIIASGSLD-HE--VRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG-H---KLY 215 (767)
Q Consensus 143 ~~L~gH~~~V~sLafsP~dg~lLaSgS~D-Gt--VrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSd-d---~V~ 215 (767)
.+..+...+....|+| +++.|+..+.+ +. |.++|+.+++..........+....|+|||++|+..+. + .|+
T Consensus 281 -~lt~~~~~~~~~~wSP-DG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~ 358 (429)
T PRK03629 281 -QVTDGRSNNTEPTWFP-DSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIA 358 (429)
T ss_pred -EccCCCCCcCceEECC-CCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEE
Confidence 4444455678899999 78877666653 44 44557777665444334445667899999999887663 2 289
Q ss_pred EEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217 216 IWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (767)
Q Consensus 216 VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs 255 (767)
+||+.+++... +.. ........|+|||+.|+.++.
T Consensus 359 ~~dl~~g~~~~----Lt~-~~~~~~p~~SpDG~~i~~~s~ 393 (429)
T PRK03629 359 KQDLATGGVQV----LTD-TFLDETPSIAPNGTMVIYSSS 393 (429)
T ss_pred EEECCCCCeEE----eCC-CCCCCCceECCCCCEEEEEEc
Confidence 99998775422 222 123457889999998887764
No 192
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.16 E-value=2.1e-10 Score=130.64 Aligned_cols=142 Identities=22% Similarity=0.230 Sum_probs=119.2
Q ss_pred CCCCCCCCeEEEEECCCCCeEEEEeCC-----CeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEE
Q 004217 102 PLSPPPRSTIAAAFSPDGKTLASTHGD-----HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRL 176 (767)
Q Consensus 102 ~L~gH~~sVtsVaFSpDG~~LASgs~D-----GtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrI 176 (767)
+|.||.-.|++++.||+|++||+++.. -.|+||+..+-..+..+.+|.-.|+.++|+| |+++|++.+.|.++.+
T Consensus 520 KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSp-dg~~LLsvsRDRt~sl 598 (764)
T KOG1063|consen 520 KLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSP-DGRYLLSVSRDRTVSL 598 (764)
T ss_pred HhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECC-CCcEEEEeecCceEEe
Confidence 466999999999999999999999874 3599999998888889999999999999999 9999999999999999
Q ss_pred EECCCCeEEE-----eecCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCC--ccccCCeEEecCCCCeEEEEEcc
Q 004217 177 WNASTAECIG-----SRDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMR--EETSSPRIVLRTRRSLRAVHFHP 245 (767)
Q Consensus 177 WDl~tg~~i~-----~l~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~--~~~~~~~~l~~h~~~VtsVaFSP 245 (767)
|......... ...|..-|.+..|+|++.+++++|.|+ |+||..... +.+. ......+...|++++|.|
T Consensus 599 ~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~-~~a~~~~~~aVTAv~~~~ 674 (764)
T KOG1063|consen 599 YEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYIS-RFACLKFSLAVTAVAYLP 674 (764)
T ss_pred eeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhh-hhchhccCCceeeEEeec
Confidence 9875432211 234788899999999999999999777 999998776 3322 114556789999999987
No 193
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.15 E-value=6.2e-09 Score=113.07 Aligned_cols=183 Identities=16% Similarity=0.137 Sum_probs=121.3
Q ss_pred eEEEEEEcCCCEEEEEe-CCCeEEEEeCCCC-CC------CCCCCCeEEEEECCCCCeEEEEe-CCCeEEEEECCCCeEE
Q 004217 72 QIFEAGRDARRGLASWV-EAESLHHLRPKYC-PL------SPPPRSTIAAAFSPDGKTLASTH-GDHTVKIIDCQTGSCL 142 (767)
Q Consensus 72 ~~~vA~sd~g~~LaSgs-~DgsIrlWd~~t~-~L------~gH~~sVtsVaFSpDG~~LASgs-~DGtVrVWDl~tg~~l 142 (767)
+.-+++..+++.+++.. .++.|.+|+++.. .+ ..+......++|+|||++|++++ .++.|.+||+++...+
T Consensus 82 p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l 161 (330)
T PRK11028 82 PTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHL 161 (330)
T ss_pred ceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcc
Confidence 45577777888888765 4889999998642 11 12334578899999999886554 5699999999864322
Q ss_pred EE-----Ec-cCCCCcEEEEEccCCCcEEEEEeC-CCeEEEEECCC--Ce--EEEeec-------CCCCeEEEEEcCCCC
Q 004217 143 KV-----LH-GHRRTPWVVRFHPLNPTIIASGSL-DHEVRLWNAST--AE--CIGSRD-------FYRPIASIAFHASGE 204 (767)
Q Consensus 143 ~~-----L~-gH~~~V~sLafsP~dg~lLaSgS~-DGtVrIWDl~t--g~--~i~~l~-------h~~~VtsVafSPdG~ 204 (767)
.. .. ........+.|+| ++++++++.. +++|.+||+.. ++ .+..+. .......+.|+|+|+
T Consensus 162 ~~~~~~~~~~~~g~~p~~~~~~p-dg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~ 240 (330)
T PRK11028 162 VAQEPAEVTTVEGAGPRHMVFHP-NQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGR 240 (330)
T ss_pred cccCCCceecCCCCCCceEEECC-CCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCC
Confidence 11 11 1123467899999 8888777665 99999999973 33 233321 112334688999999
Q ss_pred EEEEEEC--CcEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217 205 LLAVASG--HKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (767)
Q Consensus 205 ~LAsgSd--d~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs 255 (767)
+++++.. +.|.+|++.....................+.|+|||++|+++..
T Consensus 241 ~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~ 293 (330)
T PRK11028 241 HLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQ 293 (330)
T ss_pred EEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEc
Confidence 9999863 44999999654321101111111235568999999999988764
No 194
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.15 E-value=1.2e-09 Score=117.71 Aligned_cols=248 Identities=13% Similarity=0.056 Sum_probs=169.7
Q ss_pred eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC---------CCC--CCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCe
Q 004217 72 QIFEAGRDARRGLASWVEAESLHHLRPKYC---------PLS--PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS 140 (767)
Q Consensus 72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~---------~L~--gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~ 140 (767)
.-++.++.++++|++|..|..+++|.++.- .+. .|...|.|++|+...++|++|..+++|.+.|+++.+
T Consensus 59 iNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~q 138 (609)
T KOG4227|consen 59 INALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQ 138 (609)
T ss_pred cceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccce
Confidence 344667788999999999999999998642 233 355789999999999999999999999999999998
Q ss_pred EEEEEcc--CCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCe----EEEeecCCCCeEEEEEcCCCC-EEEEEEC-C
Q 004217 141 CLKVLHG--HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAE----CIGSRDFYRPIASIAFHASGE-LLAVASG-H 212 (767)
Q Consensus 141 ~l~~L~g--H~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~----~i~~l~h~~~VtsVafSPdG~-~LAsgSd-d 212 (767)
.+..+.. ..+.|+.+..+| ..+.|++.+.++.|.+||++... ++...........+-|+|... +|++.+. +
T Consensus 139 si~V~~~~~~~~~VY~m~~~P-~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~ 217 (609)
T KOG4227|consen 139 SIYVANENNNRGDVYHMDQHP-TDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETG 217 (609)
T ss_pred eeeeecccCcccceeecccCC-CCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccC
Confidence 8877642 335899999999 68999999999999999998754 333334567788899999875 6666664 5
Q ss_pred cEEEEEcCCCcccc-CCeEEecCC---CCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEe--ecCCCccCC-CC
Q 004217 213 KLYIWRYNMREETS-SPRIVLRTR---RSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLA--TSPGYWRYP-PP 280 (767)
Q Consensus 213 ~V~VWDl~t~~~~~-~~~~l~~h~---~~VtsVaFSPDG~~LlaSgs-----vwdl~s~~~~~~l~--t~sG~~~~p-~~ 280 (767)
++-+||.+...... ......+-. ..-.++.|+|+|..+++--. ..|+-...+..... -.+||.+.. ..
T Consensus 218 G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~K 297 (609)
T KOG4227|consen 218 GPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIK 297 (609)
T ss_pred CCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeee
Confidence 59999998765321 011111111 12357889999997776433 44444333322211 123554422 12
Q ss_pred eEEEecCCCCCCCceeeccCCCCCCce-eeEEecCCCEEEEeecCC
Q 004217 281 VICMAGAHSSSHPGLAEEVPLITPPFL-RPSFVRDDERISLQHTEH 325 (767)
Q Consensus 281 ~v~l~~~~Ssd~~~L~sg~~~~slpil-~psFSpDg~rIva~~~~~ 325 (767)
.++|. +...+++|+-...+.+| .|+-...+....++|+..
T Consensus 298 S~~F~-----~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~ 338 (609)
T KOG4227|consen 298 SMTFI-----DDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEE 338 (609)
T ss_pred eeeee-----cceeeeccCcccceEEEecCCCccccCccccCcchh
Confidence 23332 34458888888888888 555444455555555433
No 195
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.15 E-value=4.3e-09 Score=108.07 Aligned_cols=165 Identities=21% Similarity=0.240 Sum_probs=124.7
Q ss_pred CCEEEEEeCCCeEEEEeCCCC------------CCCCCC-----CCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEE
Q 004217 81 RRGLASWVEAESLHHLRPKYC------------PLSPPP-----RSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLK 143 (767)
Q Consensus 81 g~~LaSgs~DgsIrlWd~~t~------------~L~gH~-----~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~ 143 (767)
...|+++. ||.|+=|.-... +..-|. -.|+++-..|..+-|+.++.|+.++-||+++|+..+
T Consensus 72 d~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r 150 (325)
T KOG0649|consen 72 DDFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQR 150 (325)
T ss_pred hhheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEE
Confidence 55666664 588887765431 111232 358999999976667777799999999999999999
Q ss_pred EEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCC-----------CCeEEEEEcCCCCEEEEEECC
Q 004217 144 VLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFY-----------RPIASIAFHASGELLAVASGH 212 (767)
Q Consensus 144 ~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~-----------~~VtsVafSPdG~~LAsgSdd 212 (767)
.++||++.|.++.--. ....++||++||++|+||.++++++..++.. ..|.+++ -+..++++|+..
T Consensus 151 ~~rGHtDYvH~vv~R~-~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala--~~edWlvCGgGp 227 (325)
T KOG0649|consen 151 EYRGHTDYVHSVVGRN-ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALA--VNEDWLVCGGGP 227 (325)
T ss_pred EEcCCcceeeeeeecc-cCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEe--ccCceEEecCCC
Confidence 9999999999998744 4667999999999999999999999886522 2344444 456699998888
Q ss_pred cEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217 213 KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (767)
Q Consensus 213 ~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs 255 (767)
.+.+|+++..+... ...-...|..+.|..| .+++.+.
T Consensus 228 ~lslwhLrsse~t~----vfpipa~v~~v~F~~d--~vl~~G~ 264 (325)
T KOG0649|consen 228 KLSLWHLRSSESTC----VFPIPARVHLVDFVDD--CVLIGGE 264 (325)
T ss_pred ceeEEeccCCCceE----EEecccceeEeeeecc--eEEEecc
Confidence 89999999887544 4455677888888644 3566664
No 196
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.14 E-value=1.5e-09 Score=116.71 Aligned_cols=158 Identities=18% Similarity=0.211 Sum_probs=119.7
Q ss_pred CeEEEEeCCCCCCC---CCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEcc---CCCCcEEEEEccCCCcE
Q 004217 91 ESLHHLRPKYCPLS---PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHG---HRRTPWVVRFHPLNPTI 164 (767)
Q Consensus 91 gsIrlWd~~t~~L~---gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~g---H~~~V~sLafsP~dg~l 164 (767)
..+++.+.+.+... ....+|.+|.++. ++|+++-.+ .|+|||+++.+.++++.. +...+.++++++ ++.+
T Consensus 68 r~Lkv~~~Kk~~~ICe~~fpt~IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~-~n~y 143 (391)
T KOG2110|consen 68 RKLKVVHFKKKTTICEIFFPTSILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNN-ANCY 143 (391)
T ss_pred ceEEEEEcccCceEEEEecCCceEEEEEcc--ceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCC-CCce
Confidence 55777777654211 2356799999984 567766665 499999999999988854 344565565555 4456
Q ss_pred EEEE-e-CCCeEEEEECCCCeEEEeec-CCCCeEEEEEcCCCCEEEEEECCc--EEEEEcCCCccccCCeEEecC--CCC
Q 004217 165 IASG-S-LDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGHK--LYIWRYNMREETSSPRIVLRT--RRS 237 (767)
Q Consensus 165 LaSg-S-~DGtVrIWDl~tg~~i~~l~-h~~~VtsVafSPdG~~LAsgSdd~--V~VWDl~t~~~~~~~~~l~~h--~~~ 237 (767)
++.- + ..|.|.+||+.+-+.+..+. |++.+.+++|+++|.+||++++.+ |+|+.+.+++.+. .+... ...
T Consensus 144 lAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~---eFRRG~~~~~ 220 (391)
T KOG2110|consen 144 LAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLY---EFRRGTYPVS 220 (391)
T ss_pred EEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEee---eeeCCceeeE
Confidence 6652 2 35899999999988888765 999999999999999999999866 9999999988655 22222 456
Q ss_pred eEEEEEccCCCeEEEEEe
Q 004217 238 LRAVHFHPHAAPLLLTAE 255 (767)
Q Consensus 238 VtsVaFSPDG~~LlaSgs 255 (767)
|++++|+||+++|.++++
T Consensus 221 IySL~Fs~ds~~L~~sS~ 238 (391)
T KOG2110|consen 221 IYSLSFSPDSQFLAASSN 238 (391)
T ss_pred EEEEEECCCCCeEEEecC
Confidence 899999999998887776
No 197
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.14 E-value=3.1e-10 Score=120.91 Aligned_cols=137 Identities=21% Similarity=0.361 Sum_probs=112.1
Q ss_pred CeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccC-CCcEEEEEeCCCeEEEEECCCCeEEEeec---CC-CCe
Q 004217 120 KTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPL-NPTIIASGSLDHEVRLWNASTAECIGSRD---FY-RPI 194 (767)
Q Consensus 120 ~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~-dg~lLaSgS~DGtVrIWDl~tg~~i~~l~---h~-~~V 194 (767)
..+|++...|.|++||..+++.+..|+++...+..++|... ..+.+.+|+.||+|++||++....+..+. +. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 56888888999999999999999999999999999999763 46789999999999999999876655432 22 356
Q ss_pred EEEEEcCCCCEEEEEEC----Cc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEeeC
Q 004217 195 ASIAFHASGELLAVASG----HK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVN 257 (767)
Q Consensus 195 tsVafSPdG~~LAsgSd----d~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgsvw 257 (767)
.+++...+++.+++|.. +- |.+||+|..+... ......|.+.|++|.|+|....++++|+++
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l-~~~~eSH~DDVT~lrFHP~~pnlLlSGSvD 187 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLL-RQLNESHNDDVTQLRFHPSDPNLLLSGSVD 187 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchh-hhhhhhccCcceeEEecCCCCCeEEeeccc
Confidence 67777668889999873 22 9999999887622 134567999999999999999999999854
No 198
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=3.7e-09 Score=111.49 Aligned_cols=143 Identities=23% Similarity=0.327 Sum_probs=108.0
Q ss_pred CCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCC----eEEEEEccCCCCcEEEEEc-cCCCcEEEEEeCCCeEEEEE
Q 004217 104 SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTG----SCLKVLHGHRRTPWVVRFH-PLNPTIIASGSLDHEVRLWN 178 (767)
Q Consensus 104 ~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg----~~l~~L~gH~~~V~sLafs-P~dg~lLaSgS~DGtVrIWD 178 (767)
.+|.+-|+++.|++-|+++|+|+.|++|+|||.++. .+....+.|.+.|..|.|. |.-++.+++++.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 478899999999999999999999999999997543 4667788999999999995 65688999999999999997
Q ss_pred CCC------C-eEE--Ee-ecCCCCeEEEEEcCC--CCEEEEEECCc-EEEEEcCCCccccCC----------eEEecCC
Q 004217 179 AST------A-ECI--GS-RDFYRPIASIAFHAS--GELLAVASGHK-LYIWRYNMREETSSP----------RIVLRTR 235 (767)
Q Consensus 179 l~t------g-~~i--~~-l~h~~~VtsVafSPd--G~~LAsgSdd~-V~VWDl~t~~~~~~~----------~~l~~h~ 235 (767)
-.. + +-+ .+ ......|+.|.|.|. |-.||+++.|+ |+||+......+... .....+.
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~ 169 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK 169 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence 521 1 111 12 346789999999996 45788888666 999987654332200 0111355
Q ss_pred CCeEEEEEccC
Q 004217 236 RSLRAVHFHPH 246 (767)
Q Consensus 236 ~~VtsVaFSPD 246 (767)
....||.|+|.
T Consensus 170 ~~~~CvsWn~s 180 (361)
T KOG2445|consen 170 QPCFCVSWNPS 180 (361)
T ss_pred CcceEEeeccc
Confidence 66778888864
No 199
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.13 E-value=4.9e-09 Score=118.87 Aligned_cols=177 Identities=14% Similarity=0.139 Sum_probs=126.6
Q ss_pred eEEEEEEcCCCEEEEEeC---CCeEEEEeCCCCC---CCCCCCCeEEEEECCCCCeEE-EEeCCC--eEEEEECCCCeEE
Q 004217 72 QIFEAGRDARRGLASWVE---AESLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLA-STHGDH--TVKIIDCQTGSCL 142 (767)
Q Consensus 72 ~~~vA~sd~g~~LaSgs~---DgsIrlWd~~t~~---L~gH~~sVtsVaFSpDG~~LA-Sgs~DG--tVrVWDl~tg~~l 142 (767)
.....++.+++.|+..+. +..|.+||+.+++ +..+.+.+...+|||||+.|+ +.+.++ .|.+||+++++.
T Consensus 204 v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~- 282 (435)
T PRK05137 204 VLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT- 282 (435)
T ss_pred eEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-
Confidence 445666778888776653 4679999998763 556777888999999999876 445555 477889888764
Q ss_pred EEEccCCCCcEEEEEccCCCcEEEEEeC-CC--eEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEEC--C--cEE
Q 004217 143 KVLHGHRRTPWVVRFHPLNPTIIASGSL-DH--EVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG--H--KLY 215 (767)
Q Consensus 143 ~~L~gH~~~V~sLafsP~dg~lLaSgS~-DG--tVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSd--d--~V~ 215 (767)
..+..+........|+| +++.++..+. ++ .|.+||+.+++..........+....|+|+|++|+..+. + .|.
T Consensus 283 ~~Lt~~~~~~~~~~~sp-DG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~ 361 (435)
T PRK05137 283 TRLTDSPAIDTSPSYSP-DGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIG 361 (435)
T ss_pred EEccCCCCccCceeEcC-CCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEE
Confidence 45666666677899999 7777776653 33 688889887766555444556677899999999988763 2 288
Q ss_pred EEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217 216 IWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (767)
Q Consensus 216 VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs 255 (767)
+||+..+.. . .+ .....+..+.|+|||+.|+.+..
T Consensus 362 ~~d~~~~~~-~---~l-t~~~~~~~p~~spDG~~i~~~~~ 396 (435)
T PRK05137 362 VMKPDGSGE-R---IL-TSGFLVEGPTWAPNGRVIMFFRQ 396 (435)
T ss_pred EEECCCCce-E---ec-cCCCCCCCCeECCCCCEEEEEEc
Confidence 899765542 1 12 22335678999999998877664
No 200
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.13 E-value=1e-08 Score=116.94 Aligned_cols=158 Identities=17% Similarity=0.156 Sum_probs=108.4
Q ss_pred eEEEEeCCCC---CCCCCCCCeEEEEECCCCCeEEEEeCC---CeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEE
Q 004217 92 SLHHLRPKYC---PLSPPPRSTIAAAFSPDGKTLASTHGD---HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTII 165 (767)
Q Consensus 92 sIrlWd~~t~---~L~gH~~sVtsVaFSpDG~~LASgs~D---GtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lL 165 (767)
.|.++|.... .+..+...+....|||||++|+..+.+ ..|++||+.+++... +....+......|+| +++.|
T Consensus 199 ~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSP-DG~~L 276 (448)
T PRK04792 199 QLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSP-DGKKL 276 (448)
T ss_pred EEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECC-CCCEE
Confidence 4566665443 355667788999999999999877543 368999998876432 322233345789999 66655
Q ss_pred E-EEeCCCe--EEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEEC--Cc--EEEEEcCCCccccCCeEEecCCCCe
Q 004217 166 A-SGSLDHE--VRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG--HK--LYIWRYNMREETSSPRIVLRTRRSL 238 (767)
Q Consensus 166 a-SgS~DGt--VrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSd--d~--V~VWDl~t~~~~~~~~~l~~h~~~V 238 (767)
+ +.+.++. |.+||+.+++......+.......+|+|||++|+..++ +. |+++|+.+++... +.......
T Consensus 277 a~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~----Lt~~g~~~ 352 (448)
T PRK04792 277 ALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR----LTFEGEQN 352 (448)
T ss_pred EEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE----EecCCCCC
Confidence 4 5666665 77789988876655555556678899999998887774 22 8888887765422 22222334
Q ss_pred EEEEEccCCCeEEEEEe
Q 004217 239 RAVHFHPHAAPLLLTAE 255 (767)
Q Consensus 239 tsVaFSPDG~~LlaSgs 255 (767)
...+|+|||++|+.+..
T Consensus 353 ~~~~~SpDG~~l~~~~~ 369 (448)
T PRK04792 353 LGGSITPDGRSMIMVNR 369 (448)
T ss_pred cCeeECCCCCEEEEEEe
Confidence 56799999998887653
No 201
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.13 E-value=8.4e-10 Score=115.53 Aligned_cols=174 Identities=10% Similarity=0.155 Sum_probs=133.5
Q ss_pred EcCCCEEEEEeCCCeEEEEeCCCC-------CCCCCCCCeEEEEECCCC-CeEEEEeCCCeEEEEECCCCeEEEEE-cc-
Q 004217 78 RDARRGLASWVEAESLHHLRPKYC-------PLSPPPRSTIAAAFSPDG-KTLASTHGDHTVKIIDCQTGSCLKVL-HG- 147 (767)
Q Consensus 78 sd~g~~LaSgs~DgsIrlWd~~t~-------~L~gH~~sVtsVaFSpDG-~~LASgs~DGtVrVWDl~tg~~l~~L-~g- 147 (767)
.-+-.+|.+.+-|.+..+||++++ +|..|...|.+|+|..++ +.+|+.+.||.||+||++..+.-..+ +.
T Consensus 160 e~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p 239 (364)
T KOG0290|consen 160 EVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDP 239 (364)
T ss_pred cCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCC
Confidence 345678889999999999999885 477999999999999855 57899999999999999876543333 22
Q ss_pred -CCCCcEEEEEccCCCcEEEEEeCC-CeEEEEECCCC-eEEEee-cCCCCeEEEEEcCCCC-EEEEEECCc-EEEEEcCC
Q 004217 148 -HRRTPWVVRFHPLNPTIIASGSLD-HEVRLWNASTA-ECIGSR-DFYRPIASIAFHASGE-LLAVASGHK-LYIWRYNM 221 (767)
Q Consensus 148 -H~~~V~sLafsP~dg~lLaSgS~D-GtVrIWDl~tg-~~i~~l-~h~~~VtsVafSPdG~-~LAsgSdd~-V~VWDl~t 221 (767)
...+...++|++.+.+++++-..| ..|.|-|++.. ..+..+ +|...|+.++|.|... +|.+++||. +.+||+.+
T Consensus 240 ~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q 319 (364)
T KOG0290|consen 240 SPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQ 319 (364)
T ss_pred CCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEeccc
Confidence 145678899999889999986655 57999999974 345554 5999999999999764 888888887 99999976
Q ss_pred Ccc--ccCCeEEecCCCCeEEEEEccCC-CeEE
Q 004217 222 REE--TSSPRIVLRTRRSLRAVHFHPHA-APLL 251 (767)
Q Consensus 222 ~~~--~~~~~~l~~h~~~VtsVaFSPDG-~~Ll 251 (767)
.-. ...+.....-...|+.+.|++.. .++.
T Consensus 320 ~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwia 352 (364)
T KOG0290|consen 320 MPRENGEDPILAYTAGGEVNQIQWSSSQPDWIA 352 (364)
T ss_pred ccccCCCCchhhhhccceeeeeeecccCCCEEE
Confidence 432 22222333457789999999754 4443
No 202
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.12 E-value=9e-09 Score=116.14 Aligned_cols=158 Identities=14% Similarity=0.130 Sum_probs=110.4
Q ss_pred eEEEEeCCCC---CCCCCCCCeEEEEECCCCCeEEEEeCC---CeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEE
Q 004217 92 SLHHLRPKYC---PLSPPPRSTIAAAFSPDGKTLASTHGD---HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTII 165 (767)
Q Consensus 92 sIrlWd~~t~---~L~gH~~sVtsVaFSpDG~~LASgs~D---GtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lL 165 (767)
.|.++|.+.. .+..+...+...+|||||+.|+..+.+ ..|.+||+.+++... +....+.+....|+| +++.|
T Consensus 180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~Sp-DG~~l 257 (430)
T PRK00178 180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSP-DGSKL 257 (430)
T ss_pred EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECC-CCCEE
Confidence 3666676544 355677889999999999999877654 369999999886433 333344556789999 66655
Q ss_pred E-EEeCCC--eEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEECC----cEEEEEcCCCccccCCeEEecCCCCe
Q 004217 166 A-SGSLDH--EVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGH----KLYIWRYNMREETSSPRIVLRTRRSL 238 (767)
Q Consensus 166 a-SgS~DG--tVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSdd----~V~VWDl~t~~~~~~~~~l~~h~~~V 238 (767)
+ +.+.++ .|.+||+.+++......+........|+|||+.|+..++. .|+++|+.+++... +.......
T Consensus 258 a~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~----lt~~~~~~ 333 (430)
T PRK00178 258 AFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER----VTFVGNYN 333 (430)
T ss_pred EEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE----eecCCCCc
Confidence 5 555555 5888899988766554455556678999999988877742 28888887765422 21122334
Q ss_pred EEEEEccCCCeEEEEEe
Q 004217 239 RAVHFHPHAAPLLLTAE 255 (767)
Q Consensus 239 tsVaFSPDG~~LlaSgs 255 (767)
....|+|||++++.+..
T Consensus 334 ~~~~~Spdg~~i~~~~~ 350 (430)
T PRK00178 334 ARPRLSADGKTLVMVHR 350 (430)
T ss_pred cceEECCCCCEEEEEEc
Confidence 46789999998887653
No 203
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.12 E-value=6.9e-09 Score=117.64 Aligned_cols=175 Identities=15% Similarity=0.081 Sum_probs=121.4
Q ss_pred EEEEEcCCCEEEEEeC---CCeEEEEeCCCCC---CCCCCCCeEEEEECCCCCeEEE-EeCCC--eEEEEECCCCeEEEE
Q 004217 74 FEAGRDARRGLASWVE---AESLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLAS-THGDH--TVKIIDCQTGSCLKV 144 (767)
Q Consensus 74 ~vA~sd~g~~LaSgs~---DgsIrlWd~~t~~---L~gH~~sVtsVaFSpDG~~LAS-gs~DG--tVrVWDl~tg~~l~~ 144 (767)
..+++.+++.|+..+. ...|.+|++.+++ +..+.+...+++|+|||+.|+. .+.++ .|++||+.+++. ..
T Consensus 208 ~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~-~~ 286 (433)
T PRK04922 208 SPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQL-TR 286 (433)
T ss_pred cccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCe-EE
Confidence 3455677777777653 3469999998763 4445555668999999998764 45554 699999998874 45
Q ss_pred EccCCCCcEEEEEccCCCcEEEEEe-CCCe--EEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEEC-C---cEEEE
Q 004217 145 LHGHRRTPWVVRFHPLNPTIIASGS-LDHE--VRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG-H---KLYIW 217 (767)
Q Consensus 145 L~gH~~~V~sLafsP~dg~lLaSgS-~DGt--VrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSd-d---~V~VW 217 (767)
+..+.......+|+| +++.|+..+ .++. |.++|+.+++.............++|+|+|++|+..+. + .|.+|
T Consensus 287 lt~~~~~~~~~~~sp-DG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~ 365 (433)
T PRK04922 287 LTNHFGIDTEPTWAP-DGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVM 365 (433)
T ss_pred CccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEE
Confidence 555666667889999 777776665 3444 66677777765444333344557899999999887653 2 29999
Q ss_pred EcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217 218 RYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (767)
Q Consensus 218 Dl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs 255 (767)
|+.+++... + .+......+.|+|||++++.+..
T Consensus 366 d~~~g~~~~----L-t~~~~~~~p~~spdG~~i~~~s~ 398 (433)
T PRK04922 366 DLSTGSVRT----L-TPGSLDESPSFAPNGSMVLYATR 398 (433)
T ss_pred ECCCCCeEE----C-CCCCCCCCceECCCCCEEEEEEe
Confidence 998775422 2 22234557899999998877664
No 204
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.11 E-value=4.3e-09 Score=119.24 Aligned_cols=216 Identities=17% Similarity=0.164 Sum_probs=143.7
Q ss_pred EEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCC
Q 004217 75 EAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRR 150 (767)
Q Consensus 75 vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~ 150 (767)
+++..+|..|+... +..+.+||...+ ++++|++.|.|++|+.||+++|+|+.|..|.||+-+-...+ .+ .|++
T Consensus 18 ~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L-kY-SH~D 94 (1081)
T KOG1538|consen 18 IAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL-KY-SHND 94 (1081)
T ss_pred eEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccccccee-ee-ccCC
Confidence 55667777777664 567899999876 68899999999999999999999999999999986422111 11 2444
Q ss_pred Cc---------------------------------------EEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEee---
Q 004217 151 TP---------------------------------------WVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR--- 188 (767)
Q Consensus 151 ~V---------------------------------------~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l--- 188 (767)
.| .+++|.. |+.+++-|-.||+|.|-+-...+.++.-
T Consensus 95 ~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtn-DGqylalG~~nGTIsiRNk~gEek~~I~Rpg 173 (1081)
T KOG1538|consen 95 AIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTN-DGQYLALGMFNGTISIRNKNGEEKVKIERPG 173 (1081)
T ss_pred eeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecC-CCcEEEEeccCceEEeecCCCCcceEEeCCC
Confidence 44 4455555 7889999999999998865443333332
Q ss_pred cCCCCeEEEEEcCCCC-----EEEEEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCCcCCC
Q 004217 189 DFYRPIASIAFHASGE-----LLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSS 262 (767)
Q Consensus 189 ~h~~~VtsVafSPdG~-----~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgsvwdl~s~ 262 (767)
+.+.+|.+++|+|... .+++...+. +.++.+....... ...-.-...++.+.++|.+++.+|+...+.
T Consensus 174 g~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk----~r~L~FdP~CisYf~NGEy~LiGGsdk~L~-- 247 (1081)
T KOG1538|consen 174 GSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGK----DRALNFDPCCISYFTNGEYILLGGSDKQLS-- 247 (1081)
T ss_pred CCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecc----cccCCCCchhheeccCCcEEEEccCCCceE--
Confidence 2678999999999642 666666554 7777665432211 111223456899999999999988643332
Q ss_pred CcceeEeecCCCccCCCCeEEEecCCCCCCCceeeccCCCCCCceeeEEecCCCEEEEeecCC
Q 004217 263 ESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEH 325 (767)
Q Consensus 263 ~~~~~l~t~sG~~~~p~~~v~l~~~~Ssd~~~L~sg~~~~slpil~psFSpDg~rIva~~~~~ 325 (767)
+.+..|. .+ .+ ....-..+|.+.-.|++..+.++.-+.
T Consensus 248 -----~fTR~Gv--------rL-----------GT-vg~~D~WIWtV~~~PNsQ~v~~GCqDG 285 (1081)
T KOG1538|consen 248 -----LFTRDGV--------RL-----------GT-VGEQDSWIWTVQAKPNSQYVVVGCQDG 285 (1081)
T ss_pred -----EEeecCe--------EE-----------ee-ccccceeEEEEEEccCCceEEEEEccC
Confidence 2222221 11 11 111334567788899999888866544
No 205
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.11 E-value=3.9e-09 Score=113.25 Aligned_cols=178 Identities=14% Similarity=0.166 Sum_probs=130.6
Q ss_pred eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC---CCC-CCCCCeEEEEECC-CCCeEEEEeCCCeEEEEECCCC----eE-
Q 004217 72 QIFEAGRDARRGLASWVEAESLHHLRPKYC---PLS-PPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTG----SC- 141 (767)
Q Consensus 72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~---~L~-gH~~sVtsVaFSp-DG~~LASgs~DGtVrVWDl~tg----~~- 141 (767)
..-++....-..++.+..|.+|++|+.+.. +++ .....|+|++|-| .++.|+.|+.. -|.||..... ..
T Consensus 101 lr~~aWhqH~~~fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~r~~ 179 (445)
T KOG2139|consen 101 LRGVAWHQHIIAFAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNANRNI 179 (445)
T ss_pred eeeEeechhhhhhhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCccccccccc
Confidence 444566666777888999999999998764 232 3356799999999 56677877765 5899986421 11
Q ss_pred ---------EEEEccCCCCcEEEEEccCCCcEEEEEeC-CCeEEEEECCCCeEEEee-cCCCCeEEEEEcCCCCEEEEEE
Q 004217 142 ---------LKVLHGHRRTPWVVRFHPLNPTIIASGSL-DHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVAS 210 (767)
Q Consensus 142 ---------l~~L~gH~~~V~sLafsP~dg~lLaSgS~-DGtVrIWDl~tg~~i~~l-~h~~~VtsVafSPdG~~LAsgS 210 (767)
+..-.|| ..|++++|++ |+..+++++. |..|.|||..++.++... ...+.++-+.|||||.+|+.+.
T Consensus 180 ~~~s~~~~qvl~~pgh-~pVtsmqwn~-dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt 257 (445)
T KOG2139|consen 180 RMMSTHHLQVLQDPGH-NPVTSMQWNE-DGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAAT 257 (445)
T ss_pred ccccccchhheeCCCC-ceeeEEEEcC-CCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEec
Confidence 1122355 5799999999 7888888765 678999999999888775 4567788899999999888887
Q ss_pred CC-cEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217 211 GH-KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (767)
Q Consensus 211 dd-~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs 255 (767)
-| ..++|+.....-.. ...-..+.|...+|+|+|++|+.++.
T Consensus 258 ~davfrlw~e~q~wt~e---rw~lgsgrvqtacWspcGsfLLf~~s 300 (445)
T KOG2139|consen 258 CDAVFRLWQENQSWTKE---RWILGSGRVQTACWSPCGSFLLFACS 300 (445)
T ss_pred ccceeeeehhcccceec---ceeccCCceeeeeecCCCCEEEEEEc
Confidence 54 49999654332111 12223448999999999999988775
No 206
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.09 E-value=1.6e-08 Score=108.61 Aligned_cols=181 Identities=13% Similarity=0.116 Sum_probs=128.1
Q ss_pred eEEEEEEcCC-CEEEEEeCCCeEEEEeCCCC---------------C---CCCCCCCeEEEEECCCCCeEEEEeC-CCeE
Q 004217 72 QIFEAGRDAR-RGLASWVEAESLHHLRPKYC---------------P---LSPPPRSTIAAAFSPDGKTLASTHG-DHTV 131 (767)
Q Consensus 72 ~~~vA~sd~g-~~LaSgs~DgsIrlWd~~t~---------------~---L~gH~~sVtsVaFSpDG~~LASgs~-DGtV 131 (767)
..+++++..+ ..|+.++ .+-|.+|..... + -.+| -.|+++.|++||..|++++. |..|
T Consensus 143 vtclawRPlsaselavgC-r~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi 220 (445)
T KOG2139|consen 143 VTCLAWRPLSASELAVGC-RAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSI 220 (445)
T ss_pred eeEEEeccCCcceeeeee-cceeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceE
Confidence 6777776643 4555555 445889987642 1 1244 57999999999999999876 6789
Q ss_pred EEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEEC-CCCeEEEeecCCCCeEEEEEcCCCCEEEEEE
Q 004217 132 KIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNA-STAECIGSRDFYRPIASIAFHASGELLAVAS 210 (767)
Q Consensus 132 rVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl-~tg~~i~~l~h~~~VtsVafSPdG~~LAsgS 210 (767)
.|||.+++.++.....-.+.+.-+.|+| |+++|+.+.-|+..++|+. ++..+.+-.-..+.|...+|+|+|++|....
T Consensus 221 ~iWdpdtg~~~pL~~~glgg~slLkwSP-dgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~ 299 (445)
T KOG2139|consen 221 MIWDPDTGQKIPLIPKGLGGFSLLKWSP-DGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFAC 299 (445)
T ss_pred EEEcCCCCCcccccccCCCceeeEEEcC-CCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEE
Confidence 9999999987665534456788999999 9999999999999999954 4444444444556999999999999887777
Q ss_pred CCcEEEEEcCCCcc--ccC-------C---------eEEec---CCCCeEEEEEccCCCeEEEEEe
Q 004217 211 GHKLYIWRYNMREE--TSS-------P---------RIVLR---TRRSLRAVHFHPHAAPLLLTAE 255 (767)
Q Consensus 211 dd~V~VWDl~t~~~--~~~-------~---------~~l~~---h~~~VtsVaFSPDG~~LlaSgs 255 (767)
.+.-++|.+....+ ... . ....+ ..+...+++|.|.|.+|+++-+
T Consensus 300 sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fK 365 (445)
T KOG2139|consen 300 SGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFK 365 (445)
T ss_pred cCCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEc
Confidence 66645554432111 000 0 00001 1456889999999999998765
No 207
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=2.4e-09 Score=120.42 Aligned_cols=149 Identities=20% Similarity=0.351 Sum_probs=112.4
Q ss_pred CCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEE------
Q 004217 103 LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRL------ 176 (767)
Q Consensus 103 L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrI------ 176 (767)
+.+|++.|.+|...|.|.+|++|+.||+|+||.+.+|.|++++. -.+.|.+|+|+|.....++....+..+.|
T Consensus 396 yrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G 474 (733)
T KOG0650|consen 396 YRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFG 474 (733)
T ss_pred EeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCceEEeCcccc
Confidence 56999999999999999999999999999999999999998886 34579999999943333333333333333
Q ss_pred ---------------------------EECCCC-----eEEEeecCCCCeEEEEEcCCCCEEEEEEC----CcEEEEEcC
Q 004217 177 ---------------------------WNASTA-----ECIGSRDFYRPIASIAFHASGELLAVASG----HKLYIWRYN 220 (767)
Q Consensus 177 ---------------------------WDl~tg-----~~i~~l~h~~~VtsVafSPdG~~LAsgSd----d~V~VWDl~ 220 (767)
|.-... .....+.|...|..+.||..|.||++... ..|.|+++.
T Consensus 475 ~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLS 554 (733)
T KOG0650|consen 475 DRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLS 554 (733)
T ss_pred chhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecc
Confidence 322210 01123567889999999999999999873 229999998
Q ss_pred CCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217 221 MREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (767)
Q Consensus 221 t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs 255 (767)
...... .+..-.+.|.++.|+|...+|+++..
T Consensus 555 K~~sQ~---PF~kskG~vq~v~FHPs~p~lfVaTq 586 (733)
T KOG0650|consen 555 KRKSQS---PFRKSKGLVQRVKFHPSKPYLFVATQ 586 (733)
T ss_pred cccccC---chhhcCCceeEEEecCCCceEEEEec
Confidence 776543 23344678999999999998887765
No 208
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.08 E-value=1.1e-08 Score=115.75 Aligned_cols=177 Identities=20% Similarity=0.121 Sum_probs=119.5
Q ss_pred eEEEEEEcCCCEEEEEeCC---CeEEEEeCCCCC---CCCCCCCeEEEEECCCCCeEE-EEeCCCeEEEEE--CCCCeEE
Q 004217 72 QIFEAGRDARRGLASWVEA---ESLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLA-STHGDHTVKIID--CQTGSCL 142 (767)
Q Consensus 72 ~~~vA~sd~g~~LaSgs~D---gsIrlWd~~t~~---L~gH~~sVtsVaFSpDG~~LA-Sgs~DGtVrVWD--l~tg~~l 142 (767)
....+++.+++.|+..+.+ ..|.+||+.+++ +....+.+.+.+|+|||+.|+ +.+.++...||. +.++. +
T Consensus 198 v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~ 276 (427)
T PRK02889 198 IISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-L 276 (427)
T ss_pred cccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-c
Confidence 3345667788888766532 359999998763 444556677899999999887 456677766664 54444 5
Q ss_pred EEEccCCCCcEEEEEccCCCcEEEEEeC-CCeEEEEEC--CCCeEEEeecCCCCeEEEEEcCCCCEEEEEEC-C---cEE
Q 004217 143 KVLHGHRRTPWVVRFHPLNPTIIASGSL-DHEVRLWNA--STAECIGSRDFYRPIASIAFHASGELLAVASG-H---KLY 215 (767)
Q Consensus 143 ~~L~gH~~~V~sLafsP~dg~lLaSgS~-DGtVrIWDl--~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSd-d---~V~ 215 (767)
..+..+...+....|+| |++.++..+. ++...||.+ .+++..............+|+|+|++|+..+. + .|+
T Consensus 277 ~~lt~~~~~~~~~~wSp-DG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~ 355 (427)
T PRK02889 277 RRLTQSSGIDTEPFFSP-DGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLY 355 (427)
T ss_pred EECCCCCCCCcCeEEcC-CCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEE
Confidence 55665666667789999 7777665553 566666654 45544333323334456889999999987763 2 299
Q ss_pred EEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217 216 IWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (767)
Q Consensus 216 VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs 255 (767)
+||+.+++... +.. ......+.|+|||+.|+.+..
T Consensus 356 v~d~~~g~~~~----lt~-~~~~~~p~~spdg~~l~~~~~ 390 (427)
T PRK02889 356 VQDLATGQVTA----LTD-TTRDESPSFAPNGRYILYATQ 390 (427)
T ss_pred EEECCCCCeEE----ccC-CCCccCceECCCCCEEEEEEe
Confidence 99998776422 222 233467899999998888765
No 209
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.07 E-value=1.4e-09 Score=121.21 Aligned_cols=149 Identities=16% Similarity=0.159 Sum_probs=120.5
Q ss_pred eEEEEEEcCCCEEEEEeCCCeEEEEeCCCCCC-----CCCCCCeEEEEECC--CCCeEEEEeCCCeEEEEECCCC-----
Q 004217 72 QIFEAGRDARRGLASWVEAESLHHLRPKYCPL-----SPPPRSTIAAAFSP--DGKTLASTHGDHTVKIIDCQTG----- 139 (767)
Q Consensus 72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~L-----~gH~~sVtsVaFSp--DG~~LASgs~DGtVrVWDl~tg----- 139 (767)
+-+..+..+|..|++|+.|..+.+||....++ .+|...|.++.|-| +.+++++|..|..|+++|+...
T Consensus 53 VN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~ 132 (758)
T KOG1310|consen 53 VNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGM 132 (758)
T ss_pred ecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEeccccccccc
Confidence 55688889999999999999999999986543 49999999999999 6678999999999999999741
Q ss_pred -----eEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEE-------ee----cCCCCeEEEEEcCCC
Q 004217 140 -----SCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIG-------SR----DFYRPIASIAFHASG 203 (767)
Q Consensus 140 -----~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~-------~l----~h~~~VtsVafSPdG 203 (767)
...+.+..|...|..|+-.|.+.+.|.++++||+|+-+|++...... .+ ..--...+++.+|..
T Consensus 133 d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~r 212 (758)
T KOG1310|consen 133 DHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSR 212 (758)
T ss_pred ccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCC
Confidence 23455678999999999999666999999999999999999633211 11 112345789999977
Q ss_pred C-EEEEEECCc-EEEEEcC
Q 004217 204 E-LLAVASGHK-LYIWRYN 220 (767)
Q Consensus 204 ~-~LAsgSdd~-V~VWDl~ 220 (767)
. +|++|+.+- .++||.+
T Consensus 213 p~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 213 PYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred CceEEecCCCchhhhhhhh
Confidence 5 788888766 9999954
No 210
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.01 E-value=2.2e-09 Score=117.06 Aligned_cols=144 Identities=18% Similarity=0.222 Sum_probs=110.0
Q ss_pred EEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec-
Q 004217 111 IAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD- 189 (767)
Q Consensus 111 tsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~- 189 (767)
.+++|+.||..|++++.||++|||+..+...+..+..|.+.|.++.|+| |+++|++.+.| ..+||+.+++.++....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 7899999999999999999999999888887878888999999999999 99999999999 89999999997776654
Q ss_pred --CCCCeEEEEEcCCC---CEEEEEE--C-CcEEEEEcCCCcccc--CCeEEecCCCCeEEEEEccCCCeEEEEEee
Q 004217 190 --FYRPIASIAFHASG---ELLAVAS--G-HKLYIWRYNMREETS--SPRIVLRTRRSLRAVHFHPHAAPLLLTAEV 256 (767)
Q Consensus 190 --h~~~VtsVafSPdG---~~LAsgS--d-d~V~VWDl~t~~~~~--~~~~l~~h~~~VtsVaFSPDG~~LlaSgsv 256 (767)
.+.....+.|+-|+ .+.+.+. . ++|+.||+....... +......-...|.+++.++||++++.++..
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~d 302 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMD 302 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccC
Confidence 33445677888777 3333333 2 337777765333210 111222334689999999999988776653
No 211
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.00 E-value=8.9e-10 Score=122.74 Aligned_cols=94 Identities=27% Similarity=0.373 Sum_probs=87.3
Q ss_pred CCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEE
Q 004217 107 PRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIG 186 (767)
Q Consensus 107 ~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~ 186 (767)
.+.|+..+|||||++||+.+.||.+||+|..+.+.+..++..-+...|++|+| |+++|++|++|.-|.||.+...+.+.
T Consensus 290 ~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSP-DGKyIvtGGEDDLVtVwSf~erRVVA 368 (636)
T KOG2394|consen 290 EGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSP-DGKYIVTGGEDDLVTVWSFEERRVVA 368 (636)
T ss_pred cccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcC-CccEEEecCCcceEEEEEeccceEEE
Confidence 34789999999999999999999999999999888877777788899999999 99999999999999999999999887
Q ss_pred e-ecCCCCeEEEEEcC
Q 004217 187 S-RDFYRPIASIAFHA 201 (767)
Q Consensus 187 ~-l~h~~~VtsVafSP 201 (767)
. .+|++.|..|+|+|
T Consensus 369 RGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 369 RGQGHKSWVSVVAFDP 384 (636)
T ss_pred eccccccceeeEeecc
Confidence 7 67999999999997
No 212
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.99 E-value=5.2e-08 Score=117.00 Aligned_cols=196 Identities=11% Similarity=0.142 Sum_probs=140.7
Q ss_pred EEEEEcCCCEEEEEeCCCeEEEEeCCCC-----------CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCC--e
Q 004217 74 FEAGRDARRGLASWVEAESLHHLRPKYC-----------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTG--S 140 (767)
Q Consensus 74 ~vA~sd~g~~LaSgs~DgsIrlWd~~t~-----------~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg--~ 140 (767)
....++++..+++|+.||+||+|+...- ++..-...+.++.+-+.++.+|.++.||.|++.+++.. +
T Consensus 1054 ~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~ 1133 (1431)
T KOG1240|consen 1054 LAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVS 1133 (1431)
T ss_pred eeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccc
Confidence 3344556699999999999999998642 12224567888999999999999999999999998752 1
Q ss_pred -----EEEEEccCC--CCcEEEEEccCCCc-EEEEEeCCCeEEEEECCCCeEEEeec---CCCCeEEEEEcCCCCEEEEE
Q 004217 141 -----CLKVLHGHR--RTPWVVRFHPLNPT-IIASGSLDHEVRLWNASTAECIGSRD---FYRPIASIAFHASGELLAVA 209 (767)
Q Consensus 141 -----~l~~L~gH~--~~V~sLafsP~dg~-lLaSgS~DGtVrIWDl~tg~~i~~l~---h~~~VtsVafSPdG~~LAsg 209 (767)
+.+....+. ..|..-+|...... .++.+..-+.|..||++.......++ ..+.|++++.+|.+.+++.|
T Consensus 1134 ~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviG 1213 (1431)
T KOG1240|consen 1134 KRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIG 1213 (1431)
T ss_pred cceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEe
Confidence 122222222 22333344443344 78888888999999999877666654 45789999999999999999
Q ss_pred ECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCC---eEEEEEe-------eCCcCCCCcceeEeec
Q 004217 210 SGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAA---PLLLTAE-------VNDLDSSESSLTLATS 271 (767)
Q Consensus 210 Sdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~---~LlaSgs-------vwdl~s~~~~~~l~t~ 271 (767)
...+ +.+||+|-+..+. .....+..+++.+..+|... ..++++. .|++..+.+...+...
T Consensus 1214 ts~G~l~lWDLRF~~~i~--sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s 1284 (1431)
T KOG1240|consen 1214 TSRGQLVLWDLRFRVPIL--SWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWAS 1284 (1431)
T ss_pred cCCceEEEEEeecCceee--cccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcC
Confidence 9766 9999999887654 22334567888888777544 4454443 7888877776666655
No 213
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=98.98 E-value=3.7e-10 Score=130.46 Aligned_cols=150 Identities=21% Similarity=0.346 Sum_probs=122.0
Q ss_pred CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCC
Q 004217 102 PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST 181 (767)
Q Consensus 102 ~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~t 181 (767)
.|.+|...|.|+.|...|.++++|++|..||||..+++.++....||.+.|+.++.+. +..++++++.|..|++|-+.+
T Consensus 185 rLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~-~n~~iaaaS~D~vIrvWrl~~ 263 (1113)
T KOG0644|consen 185 RLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSS-NNTMIAAASNDKVIRVWRLPD 263 (1113)
T ss_pred HHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccch-hhhhhhhcccCceEEEEecCC
Confidence 3679999999999999999999999999999999999999999999999999999988 888999999999999999999
Q ss_pred CeEEEe-ecCCCCeEEEEEcCCCCEEEEEECCcEEEEEcCCCccccCCeEE-ecCCCCeEEEEEccCCCeEEEEEe
Q 004217 182 AECIGS-RDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIV-LRTRRSLRAVHFHPHAAPLLLTAE 255 (767)
Q Consensus 182 g~~i~~-l~h~~~VtsVafSPdG~~LAsgSdd~V~VWDl~t~~~~~~~~~l-~~h~~~VtsVaFSPDG~~LlaSgs 255 (767)
+.++.. .+|.+.|++++|+|-. .++.+|.+++||.+-.-.+..+... ......+.++.|..++..+++...
T Consensus 264 ~~pvsvLrghtgavtaiafsP~~---sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~ 336 (1113)
T KOG0644|consen 264 GAPVSVLRGHTGAVTAIAFSPRA---SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSR 336 (1113)
T ss_pred CchHHHHhccccceeeeccCccc---cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccC
Confidence 999887 4699999999999976 3333455999999832222211111 122456777788777776665443
No 214
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=98.97 E-value=1.4e-08 Score=104.35 Aligned_cols=185 Identities=14% Similarity=0.034 Sum_probs=128.7
Q ss_pred EEEEcCCCEEEEEeCCCeEEEEeCCCC--------------CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCe
Q 004217 75 EAGRDARRGLASWVEAESLHHLRPKYC--------------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS 140 (767)
Q Consensus 75 vA~sd~g~~LaSgs~DgsIrlWd~~t~--------------~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~ 140 (767)
.+++..+++++.+..+|.|-+..++.- ..++|.++|+.++|. ..+|++|+ ||.|+=|..+...
T Consensus 16 qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~ 92 (325)
T KOG0649|consen 16 QAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEE 92 (325)
T ss_pred HhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeeehhhh
Confidence 345567788888999999988887541 246899999999998 45677776 4999999765321
Q ss_pred E------EEEE--ccCC-----CCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEee-cCCCCeEEEEEcCCCCEE
Q 004217 141 C------LKVL--HGHR-----RTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELL 206 (767)
Q Consensus 141 ~------l~~L--~gH~-----~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l-~h~~~VtsVafSPdG~~L 206 (767)
. +... .-|. ..|+++-..| ..+-++.++.|+.+.-||+++|+..+++ +|.+.|.++.--.....+
T Consensus 93 es~~~K~lwe~~~P~~~~~~evPeINam~ldP-~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qi 171 (325)
T KOG0649|consen 93 ESLATKRLWEVKIPMQVDAVEVPEINAMWLDP-SENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQI 171 (325)
T ss_pred hhccchhhhhhcCccccCcccCCccceeEecc-CCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcce
Confidence 1 1111 1222 3588999999 5555555568999999999999999986 499999999874444566
Q ss_pred EEEECCc-EEEEEcCCCccccCCe------EEecC-CCCeEEEEEccCCCeEEEEEe----eCCcCCCCcc
Q 004217 207 AVASGHK-LYIWRYNMREETSSPR------IVLRT-RRSLRAVHFHPHAAPLLLTAE----VNDLDSSESS 265 (767)
Q Consensus 207 AsgSdd~-V~VWDl~t~~~~~~~~------~l~~h-~~~VtsVaFSPDG~~LlaSgs----vwdl~s~~~~ 265 (767)
.+|+.|+ +++||.++.+.+.... .+..| ..+|-+++- +..+|+.+++ +|.++..++.
T Consensus 172 lsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGgGp~lslwhLrsse~t 240 (325)
T KOG0649|consen 172 LSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGGPKLSLWHLRSSEST 240 (325)
T ss_pred eecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecCCCceeEEeccCCCce
Confidence 7777655 9999999998755111 11112 334555554 4556776654 7888766553
No 215
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.97 E-value=5.3e-08 Score=108.74 Aligned_cols=175 Identities=18% Similarity=0.122 Sum_probs=121.9
Q ss_pred EEEEEcCCCEEEEEeCC---CeEEEEeCCCCC---CCCCCCCeEEEEECCCCCeEEEE-eCC--CeEEEEECCCCeEEEE
Q 004217 74 FEAGRDARRGLASWVEA---ESLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLAST-HGD--HTVKIIDCQTGSCLKV 144 (767)
Q Consensus 74 ~vA~sd~g~~LaSgs~D---gsIrlWd~~t~~---L~gH~~sVtsVaFSpDG~~LASg-s~D--GtVrVWDl~tg~~l~~ 144 (767)
...++.+++.|+....+ ..|.+|++.+++ +..+.+.+.+++|+|||+.|+.. +.+ ..|++||+.+++. ..
T Consensus 194 ~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~-~~ 272 (417)
T TIGR02800 194 SPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQL-TR 272 (417)
T ss_pred cccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCE-EE
Confidence 34466777777766543 479999998763 44566677889999999987654 434 3589999988764 44
Q ss_pred EccCCCCcEEEEEccCCCcEEEEEeC-CC--eEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEECC----cEEEE
Q 004217 145 LHGHRRTPWVVRFHPLNPTIIASGSL-DH--EVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGH----KLYIW 217 (767)
Q Consensus 145 L~gH~~~V~sLafsP~dg~lLaSgS~-DG--tVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSdd----~V~VW 217 (767)
+..+........|+| +++.|+..+. ++ .|.+||+.+++..........+..+.|+|+|++|+.++.+ .|.+|
T Consensus 273 l~~~~~~~~~~~~s~-dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~ 351 (417)
T TIGR02800 273 LTNGPGIDTEPSWSP-DGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVM 351 (417)
T ss_pred CCCCCCCCCCEEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEE
Confidence 445555556789999 7777665554 33 5888888877765554455667788999999998888743 38999
Q ss_pred EcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217 218 RYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (767)
Q Consensus 218 Dl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs 255 (767)
|+.++... .+.. ........|+|||++|+.+..
T Consensus 352 d~~~~~~~----~l~~-~~~~~~p~~spdg~~l~~~~~ 384 (417)
T TIGR02800 352 DLDGGGER----VLTD-TGLDESPSFAPNGRMILYATT 384 (417)
T ss_pred eCCCCCeE----EccC-CCCCCCceECCCCCEEEEEEe
Confidence 98875431 2222 223456789999998877665
No 216
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=98.97 E-value=5.2e-09 Score=117.39 Aligned_cols=154 Identities=16% Similarity=0.157 Sum_probs=126.7
Q ss_pred ceEEEEEEcCCCEEEEEeCCCeEEEEeCCC--------------CCCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEEC
Q 004217 71 SQIFEAGRDARRGLASWVEAESLHHLRPKY--------------CPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDC 136 (767)
Q Consensus 71 s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t--------------~~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl 136 (767)
.+++++...++..+++|+-||+|+.|++.. +.+.||++.|+.+++|.....|++|+.||+|++|+.
T Consensus 346 PVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~ 425 (577)
T KOG0642|consen 346 PVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEP 425 (577)
T ss_pred ceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeecc
Confidence 478888999999999999999999995531 257899999999999999999999999999999987
Q ss_pred CCCeE--------------------------------------------EEEEc-------cCCCCcEEEEEccCCCcEE
Q 004217 137 QTGSC--------------------------------------------LKVLH-------GHRRTPWVVRFHPLNPTII 165 (767)
Q Consensus 137 ~tg~~--------------------------------------------l~~L~-------gH~~~V~sLafsP~dg~lL 165 (767)
..... +..+. .....+..+.++| +..+.
T Consensus 426 ~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~-~~~~~ 504 (577)
T KOG0642|consen 426 TEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHP-TADIT 504 (577)
T ss_pred CCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecC-CCCee
Confidence 43322 00000 0123466788899 78999
Q ss_pred EEEeCCCeEEEEECCCCeEEEe-ecCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccc
Q 004217 166 ASGSLDHEVRLWNASTAECIGS-RDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREET 225 (767)
Q Consensus 166 aSgS~DGtVrIWDl~tg~~i~~-l~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~ 225 (767)
+++..|+.|+++|..+++.+.. ..|...++++++.|+|-+|++++.++ +++|.+......
T Consensus 505 ~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~ 566 (577)
T KOG0642|consen 505 FTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCV 566 (577)
T ss_pred EecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchhee
Confidence 9999999999999999999887 45889999999999999999999666 999988765543
No 217
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.92 E-value=7.7e-09 Score=122.60 Aligned_cols=146 Identities=20% Similarity=0.229 Sum_probs=122.7
Q ss_pred EEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEE-EEccCC
Q 004217 75 EAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLK-VLHGHR 149 (767)
Q Consensus 75 vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~-~L~gH~ 149 (767)
...+.+.-++++|+.-+.|.+|+.... .+.+|.+.|.++.|+.||+++++.++|.++|+|++++.+... ...+|+
T Consensus 139 ~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHs 218 (967)
T KOG0974|consen 139 IGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHS 218 (967)
T ss_pred EeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCccccccc
Confidence 334456677889999999999998743 378999999999999999999999999999999999988765 667899
Q ss_pred CCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecC-CCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCc
Q 004217 150 RTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDF-YRPIASIAFHASGELLAVASGHK-LYIWRYNMRE 223 (767)
Q Consensus 150 ~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h-~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~ 223 (767)
..|+.+.|+| + .+++++.|.+.++|+....+.....+| .+.+..++.+++...++++++|+ +++||+....
T Consensus 219 aRvw~~~~~~-n--~i~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~ 291 (967)
T KOG0974|consen 219 ARVWACCFLP-N--RIITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRG 291 (967)
T ss_pred ceeEEEEecc-c--eeEEeccceEEEEEecccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhccc
Confidence 9999999999 4 999999999999997765544433334 46789999999988899988766 9999987543
No 218
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.92 E-value=1.5e-07 Score=106.36 Aligned_cols=176 Identities=11% Similarity=0.014 Sum_probs=118.2
Q ss_pred EEEEEEcCCCEEEEEeCC---CeEEEEeCCCCC---CCCCCCCeEEEEECCCCCeEEE-EeCCC--eEEEEECCCCeEEE
Q 004217 73 IFEAGRDARRGLASWVEA---ESLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLAS-THGDH--TVKIIDCQTGSCLK 143 (767)
Q Consensus 73 ~~vA~sd~g~~LaSgs~D---gsIrlWd~~t~~---L~gH~~sVtsVaFSpDG~~LAS-gs~DG--tVrVWDl~tg~~l~ 143 (767)
....++.+++.|+..+.+ ..|.+|++.+++ +....+.+...+|||||+.|+. ...++ .|++||+++++. .
T Consensus 202 ~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~-~ 280 (430)
T PRK00178 202 LSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQL-S 280 (430)
T ss_pred eeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCe-E
Confidence 445566778877765533 358889998763 3344455667999999998874 44444 688889988764 4
Q ss_pred EEccCCCCcEEEEEccCCCcEEEEEe-CCC--eEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEEC-C---cEEE
Q 004217 144 VLHGHRRTPWVVRFHPLNPTIIASGS-LDH--EVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG-H---KLYI 216 (767)
Q Consensus 144 ~L~gH~~~V~sLafsP~dg~lLaSgS-~DG--tVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSd-d---~V~V 216 (767)
.+..+........|+| +++.++..+ .++ .|.++|+.+++...............|+|+|++|+..+. + .|.+
T Consensus 281 ~lt~~~~~~~~~~~sp-Dg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~ 359 (430)
T PRK00178 281 RVTNHPAIDTEPFWGK-DGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAA 359 (430)
T ss_pred EcccCCCCcCCeEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCceEEEE
Confidence 4555666677789999 666655544 333 577778888775444322333456789999999887763 2 2889
Q ss_pred EEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217 217 WRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (767)
Q Consensus 217 WDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs 255 (767)
||+.+++... +. .........|+|||+.++.+..
T Consensus 360 ~dl~tg~~~~----lt-~~~~~~~p~~spdg~~i~~~~~ 393 (430)
T PRK00178 360 QDLQRGSVRI----LT-DTSLDESPSVAPNGTMLIYATR 393 (430)
T ss_pred EECCCCCEEE----cc-CCCCCCCceECCCCCEEEEEEe
Confidence 9998775422 21 1222335689999998887764
No 219
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.92 E-value=1.3e-07 Score=107.48 Aligned_cols=159 Identities=16% Similarity=0.157 Sum_probs=102.6
Q ss_pred eEEEEeCCCC---CCCCCCCCeEEEEECCCCCeEEEEeC-----CCeEEEEECCCC---eEEEEEccCCCCcEEEEEccC
Q 004217 92 SLHHLRPKYC---PLSPPPRSTIAAAFSPDGKTLASTHG-----DHTVKIIDCQTG---SCLKVLHGHRRTPWVVRFHPL 160 (767)
Q Consensus 92 sIrlWd~~t~---~L~gH~~sVtsVaFSpDG~~LASgs~-----DGtVrVWDl~tg---~~l~~L~gH~~~V~sLafsP~ 160 (767)
.|.+.++..+ ++....+.....+|||||+.|+..+. |..+.+||+.++ +......++.......+|+|
T Consensus 212 ~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSP- 290 (428)
T PRK01029 212 KIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSP- 290 (428)
T ss_pred eEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECC-
Confidence 4666677655 34445556677999999999887653 333455777653 33333333334456789999
Q ss_pred CCcEEEEEe-CCCeEEEEE--CCC-CeEEEee-cCCCCeEEEEEcCCCCEEEEEECC----cEEEEEcCCCccccCCeEE
Q 004217 161 NPTIIASGS-LDHEVRLWN--AST-AECIGSR-DFYRPIASIAFHASGELLAVASGH----KLYIWRYNMREETSSPRIV 231 (767)
Q Consensus 161 dg~lLaSgS-~DGtVrIWD--l~t-g~~i~~l-~h~~~VtsVafSPdG~~LAsgSdd----~V~VWDl~t~~~~~~~~~l 231 (767)
|++.|+..+ .++...||. +.. +.....+ .....+....|+|||++|+..+.. .|++||+.+++... +
T Consensus 291 DG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~----L 366 (428)
T PRK01029 291 DGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ----L 366 (428)
T ss_pred CCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE----c
Confidence 777666554 567655654 432 2222323 334566789999999988877632 29999998886533 3
Q ss_pred ecCCCCeEEEEEccCCCeEEEEEe
Q 004217 232 LRTRRSLRAVHFHPHAAPLLLTAE 255 (767)
Q Consensus 232 ~~h~~~VtsVaFSPDG~~LlaSgs 255 (767)
......+....|+|||+.|+.++.
T Consensus 367 t~~~~~~~~p~wSpDG~~L~f~~~ 390 (428)
T PRK01029 367 TTSPENKESPSWAIDSLHLVYSAG 390 (428)
T ss_pred cCCCCCccceEECCCCCEEEEEEC
Confidence 333345678999999998887654
No 220
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.90 E-value=5.4e-08 Score=110.00 Aligned_cols=171 Identities=15% Similarity=0.061 Sum_probs=142.3
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCCCC-------CCCCCeEEEEEC--------------------CCCCeEEEEeCCCeEE
Q 004217 80 ARRGLASWVEAESLHHLRPKYCPLS-------PPPRSTIAAAFS--------------------PDGKTLASTHGDHTVK 132 (767)
Q Consensus 80 ~g~~LaSgs~DgsIrlWd~~t~~L~-------gH~~sVtsVaFS--------------------pDG~~LASgs~DGtVr 132 (767)
...+++....||.+++|+...+++. .-.+..++..|. .|-..|+-|...|.|.
T Consensus 4 ~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~ 83 (541)
T KOG4547|consen 4 ALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVL 83 (541)
T ss_pred hhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEE
Confidence 4567778889999999999877432 234455566553 2334677788899999
Q ss_pred EEECCCCeEEEEEc--cCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec-CCCCeEEEEEcCCCCEEEEE
Q 004217 133 IIDCQTGSCLKVLH--GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVA 209 (767)
Q Consensus 133 VWDl~tg~~l~~L~--gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~-h~~~VtsVafSPdG~~LAsg 209 (767)
+|++..|+....+. .|.+.|.++.|+. +-..|.|++.|+.+..|+....+.++.+. ....+.+++.+|||..++++
T Consensus 84 ~ys~~~g~it~~~st~~h~~~v~~~~~~~-~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~a 162 (541)
T KOG4547|consen 84 LYSVAGGEITAKLSTDKHYGNVNEILDAQ-RLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTA 162 (541)
T ss_pred EEEecCCeEEEEEecCCCCCcceeeeccc-ccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEec
Confidence 99999999887775 6899999999998 88999999999999999999999998865 56678999999999999887
Q ss_pred ECCcEEEEEcCCCccccCCeEEecCCCCeEEEEEccC-----CCeEEEEEe
Q 004217 210 SGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPH-----AAPLLLTAE 255 (767)
Q Consensus 210 Sdd~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPD-----G~~LlaSgs 255 (767)
+ +.|++||+++.+.+. .+.+|.+.|++++|--+ |.+++++..
T Consensus 163 s-~~ik~~~~~~kevv~---~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~ 209 (541)
T KOG4547|consen 163 S-RQIKVLDIETKEVVI---TFTGHGSPVRTLSFTTLIDGIIGKYVLSSAA 209 (541)
T ss_pred c-ceEEEEEccCceEEE---EecCCCcceEEEEEEEeccccccceeeeccc
Confidence 5 669999999999766 89999999999999987 888887655
No 221
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.90 E-value=3.5e-07 Score=103.97 Aligned_cols=225 Identities=13% Similarity=0.164 Sum_probs=130.7
Q ss_pred eEEEEeCCCC---CCCCCCCCeEEEEECCCCCeEE---EEeCC--CeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCc
Q 004217 92 SLHHLRPKYC---PLSPPPRSTIAAAFSPDGKTLA---STHGD--HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPT 163 (767)
Q Consensus 92 sIrlWd~~t~---~L~gH~~sVtsVaFSpDG~~LA---Sgs~D--GtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~ 163 (767)
.|.+.|.+.. ++......+..-+|||||+.++ +...+ ..|.+.++.+++.. .+....+.....+|+| |++
T Consensus 166 ~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~-~lt~~~g~~~~p~wSP-DG~ 243 (428)
T PRK01029 166 ELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK-KILALQGNQLMPTFSP-RKK 243 (428)
T ss_pred eEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce-EeecCCCCccceEECC-CCC
Confidence 4555565543 3555666778899999998632 33333 35888899877643 3333444556789999 776
Q ss_pred EEEEEeC-----CCeEEEEECCCC---eEEEeecC-CCCeEEEEEcCCCCEEEEEEC--Cc--EEEEEcCCCccccCCeE
Q 004217 164 IIASGSL-----DHEVRLWNASTA---ECIGSRDF-YRPIASIAFHASGELLAVASG--HK--LYIWRYNMREETSSPRI 230 (767)
Q Consensus 164 lLaSgS~-----DGtVrIWDl~tg---~~i~~l~h-~~~VtsVafSPdG~~LAsgSd--d~--V~VWDl~t~~~~~~~~~ 230 (767)
.|+..+. |-.+.+||+..+ +....... .......+|+|||+.|+..++ +. |+++++..... ....
T Consensus 244 ~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~--~~~~ 321 (428)
T PRK01029 244 LLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQ--SPRL 321 (428)
T ss_pred EEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECccccc--ceEE
Confidence 6665442 334555777653 33333332 234467899999998887774 33 55555543211 1123
Q ss_pred EecCCCCeEEEEEccCCCeEEEEEeeCCcCCCCcceeEeecCCCccCCCCeEEEecCCCCCCCceeeccCCCCCCceeeE
Q 004217 231 VLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPS 310 (767)
Q Consensus 231 l~~h~~~VtsVaFSPDG~~LlaSgsvwdl~s~~~~~~l~t~sG~~~~p~~~v~l~~~~Ssd~~~L~sg~~~~slpil~ps 310 (767)
+..+...+....|||||++|+.+..... . ..+.+++...+....+..+ ......+.
T Consensus 322 lt~~~~~~~~p~wSPDG~~Laf~~~~~g---------------~-----~~I~v~dl~~g~~~~Lt~~----~~~~~~p~ 377 (428)
T PRK01029 322 LTKKYRNSSCPAWSPDGKKIAFCSVIKG---------------V-----RQICVYDLATGRDYQLTTS----PENKESPS 377 (428)
T ss_pred eccCCCCccceeECCCCCEEEEEEcCCC---------------C-----cEEEEEECCCCCeEEccCC----CCCccceE
Confidence 4444556788999999998887653210 0 1244444433333222222 11223588
Q ss_pred EecCCCEEEEeecCCCCCCcccccccccCCceeeeeccCCCCceeeee
Q 004217 311 FVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQYELVL 358 (767)
Q Consensus 311 FSpDg~rIva~~~~~d~Gs~~~~~~~~ss~~~~l~~~~~~~~q~~~~~ 358 (767)
|+|||+.|+...... ....+..+|..+++...+.
T Consensus 378 wSpDG~~L~f~~~~~--------------g~~~L~~vdl~~g~~~~Lt 411 (428)
T PRK01029 378 WAIDSLHLVYSAGNS--------------NESELYLISLITKKTRKIV 411 (428)
T ss_pred ECCCCCEEEEEECCC--------------CCceEEEEECCCCCEEEee
Confidence 999999998733211 1235677777777665554
No 222
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=98.88 E-value=1.5e-07 Score=109.14 Aligned_cols=186 Identities=12% Similarity=0.048 Sum_probs=135.0
Q ss_pred eEEEEEE-cCCCEEEEEeCCCeEEEEeCCCCC----------CCCCCCCeEEEEECCCCC--eEEEEeCCCeEEEEECCC
Q 004217 72 QIFEAGR-DARRGLASWVEAESLHHLRPKYCP----------LSPPPRSTIAAAFSPDGK--TLASTHGDHTVKIIDCQT 138 (767)
Q Consensus 72 ~~~vA~s-d~g~~LaSgs~DgsIrlWd~~t~~----------L~gH~~sVtsVaFSpDG~--~LASgs~DGtVrVWDl~t 138 (767)
..++.+. .+...++.|..+|.|.+||..... ...|..+|+.+.|-.+.. -|++++.||.|..|+++.
T Consensus 245 v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~ 324 (555)
T KOG1587|consen 245 VTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDM 324 (555)
T ss_pred eeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccc
Confidence 4445544 467889999999999999998653 237899999999987544 499999999999998864
Q ss_pred CeE------EEEEc------cCCCCcEEEEEccCCCcEEEEEeCCCeEEEEE---CCCCe-E----E-EeecCCCCeEEE
Q 004217 139 GSC------LKVLH------GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWN---ASTAE-C----I-GSRDFYRPIASI 197 (767)
Q Consensus 139 g~~------l~~L~------gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWD---l~tg~-~----i-~~l~h~~~VtsV 197 (767)
-.. ..... .-...+++++|.+.+.+.|+.|+.+|.|.--+ .+... . . ....|.+.|+++
T Consensus 325 l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v 404 (555)
T KOG1587|consen 325 LSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAV 404 (555)
T ss_pred cccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEee
Confidence 322 11111 12246889999998999999999999987733 33322 1 1 113488999999
Q ss_pred EEcCCCC-EEEEEECCcEEEEEcC-CCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe------eCCcC
Q 004217 198 AFHASGE-LLAVASGHKLYIWRYN-MREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE------VNDLD 260 (767)
Q Consensus 198 afSPdG~-~LAsgSdd~V~VWDl~-t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs------vwdl~ 260 (767)
.++|=+. ++.+++|.+++||... .... ...+..+...|++++|||.-..++++.. +||+.
T Consensus 405 ~~nPF~~k~fls~gDW~vriWs~~~~~~P---l~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl 472 (555)
T KOG1587|consen 405 SRNPFYPKNFLSVGDWTVRIWSEDVIASP---LLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLL 472 (555)
T ss_pred ecCCCccceeeeeccceeEeccccCCCCc---chhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhh
Confidence 9999886 5555567779999876 3332 2345566777999999999887777765 56555
No 223
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.86 E-value=3.8e-08 Score=116.63 Aligned_cols=179 Identities=15% Similarity=0.164 Sum_probs=128.9
Q ss_pred EEEEcCCCEEEEEeCCCeEEEEeCCCCC-----CCCCCCCeEEEEECC-CCCeEEEEeCCCeEEEEECCCC---eEEEEE
Q 004217 75 EAGRDARRGLASWVEAESLHHLRPKYCP-----LSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTG---SCLKVL 145 (767)
Q Consensus 75 vA~sd~g~~LaSgs~DgsIrlWd~~t~~-----L~gH~~sVtsVaFSp-DG~~LASgs~DGtVrVWDl~tg---~~l~~L 145 (767)
+.+....+.|.+.++-..|++||++..+ -.+-...|+++.-+. .|+.|+.|..||.|++||.+.. ..+...
T Consensus 1171 ~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~ 1250 (1387)
T KOG1517|consen 1171 VDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVY 1250 (1387)
T ss_pred eehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceee
Confidence 3333444555555568889999998763 224455677777665 5799999999999999998753 356778
Q ss_pred ccCCCC--cEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEee------cCCCCeEEEEEcCCCCEEEEEECCcEEEE
Q 004217 146 HGHRRT--PWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR------DFYRPIASIAFHASGELLAVASGHKLYIW 217 (767)
Q Consensus 146 ~gH~~~--V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l------~h~~~VtsVafSPdG~~LAsgSdd~V~VW 217 (767)
+.|.+. |..+.+.+.+-..|++|+.||.|++||++.......+ +..+..+++..|++...+|+|+...|+||
T Consensus 1251 R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~q~ikIy 1330 (1387)
T KOG1517|consen 1251 REHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSAQLIKIY 1330 (1387)
T ss_pred cccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCcceEEEE
Confidence 889887 9999999845557999999999999999975222221 12346999999999999999999669999
Q ss_pred EcCCCcccc---CCeEEecCCCCeEEEEEccCCCeEEEE
Q 004217 218 RYNMREETS---SPRIVLRTRRSLRAVHFHPHAAPLLLT 253 (767)
Q Consensus 218 Dl~t~~~~~---~~~~l~~h~~~VtsVaFSPDG~~LlaS 253 (767)
++....... ....+......+.+++|||.--.++++
T Consensus 1331 ~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG 1369 (1387)
T KOG1517|consen 1331 SLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAG 1369 (1387)
T ss_pred ecChhhhcccccCcccccCcCCCcceeeecchhHhhhhc
Confidence 987654321 011122234578999999987644433
No 224
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=98.86 E-value=2e-07 Score=109.28 Aligned_cols=184 Identities=14% Similarity=0.055 Sum_probs=141.4
Q ss_pred CCcceEEEEEEcCCCEEEEEeCCCeEEEEeCCC--C------CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCC
Q 004217 68 GSFSQIFEAGRDARRGLASWVEAESLHHLRPKY--C------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTG 139 (767)
Q Consensus 68 ~s~s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t--~------~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg 139 (767)
..+...+++.+..+..++++..||+|.+|.-.. . .+.=|...|.+++|++||.+|++|+..+.+-+|.++++
T Consensus 204 Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~ 283 (792)
T KOG1963|consen 204 HTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETG 283 (792)
T ss_pred hcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCC
Confidence 345578899999999999999999999998655 1 25578999999999999999999999999999999998
Q ss_pred eEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec------------CCCCeEEEEEcCCCCEEE
Q 004217 140 SCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD------------FYRPIASIAFHASGELLA 207 (767)
Q Consensus 140 ~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~------------h~~~VtsVafSPdG~~LA 207 (767)
+ .+-|..-.+.|..+.++| ++++.+....|+.|.+-...+.+....+. ..+-.+.++++|.-+.++
T Consensus 284 ~-kqfLPRLgs~I~~i~vS~-ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~v 361 (792)
T KOG1963|consen 284 K-KQFLPRLGSPILHIVVSP-DSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLV 361 (792)
T ss_pred C-cccccccCCeeEEEEEcC-CCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCcee
Confidence 8 445566778999999999 89999999999999999886655444332 133456788999544444
Q ss_pred EEE-CCcEEEEEcCCCccccCCeEEec--------CCCCeEEEEEccCCCeEEEE
Q 004217 208 VAS-GHKLYIWRYNMREETSSPRIVLR--------TRRSLRAVHFHPHAAPLLLT 253 (767)
Q Consensus 208 sgS-dd~V~VWDl~t~~~~~~~~~l~~--------h~~~VtsVaFSPDG~~LlaS 253 (767)
..+ .+.|.+||+-+...+........ +...+++++++-.|.++++.
T Consensus 362 ln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~ 416 (792)
T KOG1963|consen 362 LNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATL 416 (792)
T ss_pred ecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEe
Confidence 444 55699999988776542222211 23357888889898866553
No 225
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=98.85 E-value=1.2e-08 Score=105.80 Aligned_cols=138 Identities=18% Similarity=0.230 Sum_probs=113.6
Q ss_pred CCEEEEEeCCCeEEEEeCCCC--------------CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCC--CeEE--
Q 004217 81 RRGLASWVEAESLHHLRPKYC--------------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT--GSCL-- 142 (767)
Q Consensus 81 g~~LaSgs~DgsIrlWd~~t~--------------~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~t--g~~l-- 142 (767)
.-.++.|-++|.+.+||..++ ....|..+|.++.|.+.-..=++|+-+..+..|.++. +.+.
T Consensus 165 ~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~ 244 (323)
T KOG0322|consen 165 TFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIR 244 (323)
T ss_pred eEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCccccc
Confidence 345678889999999999885 2447999999999998655667888888899998864 3321
Q ss_pred EEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec-CCCCeEEEEEcCCCCEEEEEECCc-EEEEEc
Q 004217 143 KVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGHK-LYIWRY 219 (767)
Q Consensus 143 ~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~-h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl 219 (767)
..++-....|..+..-| |++++++++.|+.||+|..++.+.+..+. |...|++++|+|+..++|.++.|. |.+|++
T Consensus 245 ~e~~lknpGv~gvrIRp-D~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 245 KEITLKNPGVSGVRIRP-DGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred ceEEecCCCccceEEcc-CCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 22222345688899999 99999999999999999999999999876 889999999999999999999666 999986
No 226
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.84 E-value=4.4e-07 Score=103.70 Aligned_cols=175 Identities=16% Similarity=0.088 Sum_probs=113.0
Q ss_pred EEEEEcCCCEEEEEeC-CC--eEEEEeCCCCC---CCCCCCCeEEEEECCCCCeEEE-EeCCCe--EEEEECCCCeEEEE
Q 004217 74 FEAGRDARRGLASWVE-AE--SLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLAS-THGDHT--VKIIDCQTGSCLKV 144 (767)
Q Consensus 74 ~vA~sd~g~~LaSgs~-Dg--sIrlWd~~t~~---L~gH~~sVtsVaFSpDG~~LAS-gs~DGt--VrVWDl~tg~~l~~ 144 (767)
...++.+++.|+..+. ++ .|.+||+.+++ +....+.....+|+|||+.|+. ...++. |++||+++++. ..
T Consensus 222 ~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~-~~ 300 (448)
T PRK04792 222 SPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKAL-TR 300 (448)
T ss_pred CceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCe-EE
Confidence 3456667777765543 22 58888887663 3333344567899999998875 455564 88889887764 44
Q ss_pred EccCCCCcEEEEEccCCCcEEEEEe-CCC--eEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEEC--Cc--EEEE
Q 004217 145 LHGHRRTPWVVRFHPLNPTIIASGS-LDH--EVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG--HK--LYIW 217 (767)
Q Consensus 145 L~gH~~~V~sLafsP~dg~lLaSgS-~DG--tVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSd--d~--V~VW 217 (767)
+..+........|+| +++.++..+ .++ .|.++|+.+++..............+|+|||++|+..+. +. |.++
T Consensus 301 lt~~~~~~~~p~wSp-DG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~ 379 (448)
T PRK04792 301 ITRHRAIDTEPSWHP-DGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQ 379 (448)
T ss_pred CccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEE
Confidence 555656677889999 777665544 344 466678877775544323333445789999998887763 22 6777
Q ss_pred EcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217 218 RYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (767)
Q Consensus 218 Dl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs 255 (767)
|+.+++... +... .......|+|||+.|+.+..
T Consensus 380 dl~~g~~~~----lt~~-~~d~~ps~spdG~~I~~~~~ 412 (448)
T PRK04792 380 DLETGAMQV----LTST-RLDESPSVAPNGTMVIYSTT 412 (448)
T ss_pred ECCCCCeEE----ccCC-CCCCCceECCCCCEEEEEEe
Confidence 887765322 2221 12235589999998877664
No 227
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.83 E-value=1.5e-07 Score=111.71 Aligned_cols=203 Identities=15% Similarity=0.181 Sum_probs=136.2
Q ss_pred eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC----------------CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEE
Q 004217 72 QIFEAGRDARRGLASWVEAESLHHLRPKYC----------------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIID 135 (767)
Q Consensus 72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----------------~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWD 135 (767)
...+....+...+.+++.||.||+|+--.. .+.+-.+.=.-++|.....+|++++.-..|+|||
T Consensus 1114 ~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWD 1193 (1387)
T KOG1517|consen 1114 DLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWD 1193 (1387)
T ss_pred eeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEe
Confidence 344445567778999999999999985321 1222223335678888555666666678999999
Q ss_pred CCCCeEEEEEc-cCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeE---EEe-ecCCCC--eEEEEEcCCCC-EEE
Q 004217 136 CQTGSCLKVLH-GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC---IGS-RDFYRP--IASIAFHASGE-LLA 207 (767)
Q Consensus 136 l~tg~~l~~L~-gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~---i~~-l~h~~~--VtsVafSPdG~-~LA 207 (767)
.+...+...+. +....|+++.-+-.+++.++.|..||.|++||.+.... +.. ..|... |..+.+-++|- .|+
T Consensus 1194 a~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elv 1273 (1387)
T KOG1517|consen 1194 AHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELV 1273 (1387)
T ss_pred cccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCccee
Confidence 99887776663 34456777776655789999999999999999986443 222 346665 99999998875 488
Q ss_pred EEECCc-EEEEEcCCCccccCCeEEecC---CCCeEEEEEccCCCeEEEEEe----eCCcCCCCcceeEeecCCCcc
Q 004217 208 VASGHK-LYIWRYNMREETSSPRIVLRT---RRSLRAVHFHPHAAPLLLTAE----VNDLDSSESSLTLATSPGYWR 276 (767)
Q Consensus 208 sgSdd~-V~VWDl~t~~~~~~~~~l~~h---~~~VtsVaFSPDG~~LlaSgs----vwdl~s~~~~~~l~t~sG~~~ 276 (767)
+|+.++ |++||++...... ......| .+.++++..|++...+++++. +|++. ++....+....++..
T Consensus 1274 Sgs~~G~I~~~DlR~~~~e~-~~~iv~~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~-G~~l~~~k~n~~F~~ 1348 (1387)
T KOG1517|consen 1274 SGSQDGDIQLLDLRMSSKET-FLTIVAHWEYGSALTALTVHEHAPIIASGSAQLIKIYSLS-GEQLNIIKYNPGFMG 1348 (1387)
T ss_pred eeccCCeEEEEecccCcccc-cceeeeccccCccceeeeeccCCCeeeecCcceEEEEecC-hhhhcccccCccccc
Confidence 888555 9999999853322 2233333 235999999999985444432 66665 333333333344433
No 228
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.82 E-value=2.7e-07 Score=98.15 Aligned_cols=170 Identities=17% Similarity=0.204 Sum_probs=122.7
Q ss_pred CcceeecccccceecC--CcceEEEEEEcCCCEEEEEeCCCeEEEEeCCCCC-------CCCCCCCeEEEEECCCCCeEE
Q 004217 53 HSSKRLLGETARKCSG--SFSQIFEAGRDARRGLASWVEAESLHHLRPKYCP-------LSPPPRSTIAAAFSPDGKTLA 123 (767)
Q Consensus 53 ~~sk~~wd~~~~~~~~--s~s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~-------L~gH~~sVtsVaFSpDG~~LA 123 (767)
.....+||.....+.. ++.....++.-.+.+|+... +++|.+|...... ....+..+.+++-..+..+||
T Consensus 74 pNkviIWDD~k~~~i~el~f~~~I~~V~l~r~riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~La 152 (346)
T KOG2111|consen 74 PNKVIIWDDLKERCIIELSFNSEIKAVKLRRDRIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLA 152 (346)
T ss_pred CceEEEEecccCcEEEEEEeccceeeEEEcCCeEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEE
Confidence 3456678865444432 23333333444556666553 6789999887441 112233355555444555555
Q ss_pred EE-eCCCeEEEEECCCCeE--EEEEccCCCCcEEEEEccCCCcEEEEEeCCCe-EEEEECCCCeEEEeec---CCCCeEE
Q 004217 124 ST-HGDHTVKIIDCQTGSC--LKVLHGHRRTPWVVRFHPLNPTIIASGSLDHE-VRLWNASTAECIGSRD---FYRPIAS 196 (767)
Q Consensus 124 Sg-s~DGtVrVWDl~tg~~--l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGt-VrIWDl~tg~~i~~l~---h~~~Vts 196 (767)
.= -.-|.|+|-|+...+. ...+..|...|.+++.+- ++.++||+|..|+ |||||..+|+.+.++. ....|.+
T Consensus 153 fPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~-~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~ 231 (346)
T KOG2111|consen 153 FPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNL-QGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYC 231 (346)
T ss_pred cCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcC-CccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEE
Confidence 53 3468999999987654 467889999999999999 9999999999998 8999999999999875 4567999
Q ss_pred EEEcCCCCEEEEEECCc-EEEEEcCCCcc
Q 004217 197 IAFHASGELLAVASGHK-LYIWRYNMREE 224 (767)
Q Consensus 197 VafSPdG~~LAsgSdd~-V~VWDl~t~~~ 224 (767)
++|+|+..+||++|+.+ |+||.++....
T Consensus 232 iaFSp~~s~LavsSdKgTlHiF~l~~~~~ 260 (346)
T KOG2111|consen 232 IAFSPNSSWLAVSSDKGTLHIFSLRDTEN 260 (346)
T ss_pred EEeCCCccEEEEEcCCCeEEEEEeecCCC
Confidence 99999999999999866 99999886543
No 229
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.82 E-value=1.9e-08 Score=113.42 Aligned_cols=188 Identities=15% Similarity=0.139 Sum_probs=147.1
Q ss_pred cceEEEEEEcCCCEEEEEeCC---CeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEE
Q 004217 70 FSQIFEAGRDARRGLASWVEA---ESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCL 142 (767)
Q Consensus 70 ~s~~~vA~sd~g~~LaSgs~D---gsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l 142 (767)
.....+.+...|.+|++...+ ..|.+.++... .|....+.|.++.|+|...+|+.++. ..|+|||+.....+
T Consensus 522 k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelv 600 (733)
T KOG0650|consen 522 KSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELV 600 (733)
T ss_pred CccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHH
Confidence 345566777889999987654 45778887654 45566788999999998888888776 58999999988777
Q ss_pred EEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCC-eEEEeec-CCCCeEEEEEcCCCCEEEEEECCc-EEEEE-
Q 004217 143 KVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTA-ECIGSRD-FYRPIASIAFHASGELLAVASGHK-LYIWR- 218 (767)
Q Consensus 143 ~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg-~~i~~l~-h~~~VtsVafSPdG~~LAsgSdd~-V~VWD- 218 (767)
+.+..-...|..++.|| +++-|+.|+.|+.+..+|+.-. +..+.+. |...+++|+||+.-.++++|++|+ +.|+.
T Consensus 601 KkL~tg~kwiS~msihp-~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg 679 (733)
T KOG0650|consen 601 KKLLTGSKWISSMSIHP-NGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHG 679 (733)
T ss_pred HHHhcCCeeeeeeeecC-CCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEee
Confidence 77776777899999999 8888999999999999999754 4455544 888999999999999999999876 77664
Q ss_pred -----cCCCccccCCeEEecCCCC----eEEEEEccCCCeEEEEEeeCCc
Q 004217 219 -----YNMREETSSPRIVLRTRRS----LRAVHFHPHAAPLLLTAEVNDL 259 (767)
Q Consensus 219 -----l~t~~~~~~~~~l~~h~~~----VtsVaFSPDG~~LlaSgsvwdl 259 (767)
+...-.+.+...+.+|... |..+.|||...+|++++....+
T Consensus 680 ~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~ti 729 (733)
T KOG0650|consen 680 MVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTI 729 (733)
T ss_pred eeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceE
Confidence 2233334445667788554 8899999999999888764443
No 230
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=98.78 E-value=2.9e-08 Score=103.06 Aligned_cols=146 Identities=14% Similarity=0.183 Sum_probs=111.4
Q ss_pred CCCCeEEEEECC-CCC--eEEEEeCCCeEEEEECCCCeE----------EEEEccCCCCcEEEEEccCCCcEEEEEeCCC
Q 004217 106 PPRSTIAAAFSP-DGK--TLASTHGDHTVKIIDCQTGSC----------LKVLHGHRRTPWVVRFHPLNPTIIASGSLDH 172 (767)
Q Consensus 106 H~~sVtsVaFSp-DG~--~LASgs~DGtVrVWDl~tg~~----------l~~L~gH~~~V~sLafsP~dg~lLaSgS~DG 172 (767)
..+.+.|..+.. +++ +|+.|-.+|.|.+||+.++.. ......|..+|.++.|.+ ..+.=++|+.+.
T Consensus 149 Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas-~~~rGisgga~d 227 (323)
T KOG0322|consen 149 KLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYAS-SCDRGISGGADD 227 (323)
T ss_pred ccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeech-hhcCCcCCCccc
Confidence 445677777554 444 457778899999999998733 334457999999999988 666677888888
Q ss_pred eEEEEECCCC--eEEEe--ec-CCCCeEEEEEcCCCCEEEEEEC-CcEEEEEcCCCccccCCeEEecCCCCeEEEEEccC
Q 004217 173 EVRLWNASTA--ECIGS--RD-FYRPIASIAFHASGELLAVASG-HKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPH 246 (767)
Q Consensus 173 tVrIWDl~tg--~~i~~--l~-h~~~VtsVafSPdG~~LAsgSd-d~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPD 246 (767)
.+..|.+... .+... +. .+-.|..+.+-||++.+|+++. ++|+||..++...+. .+.-|...|++++|+||
T Consensus 228 kl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLA---VLkyHsagvn~vAfspd 304 (323)
T KOG0322|consen 228 KLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLA---VLKYHSAGVNAVAFSPD 304 (323)
T ss_pred cceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchh---hhhhhhcceeEEEeCCC
Confidence 9999988743 33221 22 2345778899999999999995 459999999998655 77889999999999999
Q ss_pred CCeEEEEEe
Q 004217 247 AAPLLLTAE 255 (767)
Q Consensus 247 G~~LlaSgs 255 (767)
...++++++
T Consensus 305 ~~lmAaask 313 (323)
T KOG0322|consen 305 CELMAAASK 313 (323)
T ss_pred CchhhhccC
Confidence 886666654
No 231
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=98.77 E-value=1.1e-06 Score=103.24 Aligned_cols=177 Identities=12% Similarity=0.117 Sum_probs=124.4
Q ss_pred EEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCC---CeEEEEeCCCeEEEEECCCCeEEEEEcc
Q 004217 75 EAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDG---KTLASTHGDHTVKIIDCQTGSCLKVLHG 147 (767)
Q Consensus 75 vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG---~~LASgs~DGtVrVWDl~tg~~l~~L~g 147 (767)
..++++.+.++.. .+..|++|...++ .+.+|..+++.+.+.|.. .++.+++.||.|++||...+..++++..
T Consensus 22 avfSnD~k~l~~~-~~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~ 100 (792)
T KOG1963|consen 22 AVFSNDAKFLFLC-TGNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDN 100 (792)
T ss_pred cccccCCcEEEEe-eCCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEec
Confidence 4455677777655 4778999999887 478999999999999843 4678999999999999988877766642
Q ss_pred CCCCcE-----------------------------------------------------------EEEEccCCCcEEEEE
Q 004217 148 HRRTPW-----------------------------------------------------------VVRFHPLNPTIIASG 168 (767)
Q Consensus 148 H~~~V~-----------------------------------------------------------sLafsP~dg~lLaSg 168 (767)
+.. +. .+.+++ .+. +...
T Consensus 101 ~~~-v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~-~ge-~~~i 177 (792)
T KOG1963|consen 101 NLP-VHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNN-SGE-FKGI 177 (792)
T ss_pred CCc-eeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcC-Cce-EEEE
Confidence 211 11 122222 111 2222
Q ss_pred eCCCeEEEEECCCCeEEEe-----ecCCCCeEEEEEcCCCCEEEEEEC-CcEEEEEcCC-CccccCCeEEecCCCCeEEE
Q 004217 169 SLDHEVRLWNASTAECIGS-----RDFYRPIASIAFHASGELLAVASG-HKLYIWRYNM-REETSSPRIVLRTRRSLRAV 241 (767)
Q Consensus 169 S~DGtVrIWDl~tg~~i~~-----l~h~~~VtsVafSPdG~~LAsgSd-d~V~VWDl~t-~~~~~~~~~l~~h~~~VtsV 241 (767)
-.+..+.+|+..++..... ..|...+++.++||+++++|++.. |+|.+|.--. .......+.+..|...|.++
T Consensus 178 ~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L 257 (792)
T KOG1963|consen 178 VHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSL 257 (792)
T ss_pred EEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEeccccccee
Confidence 3345677787776441111 235666899999999999999985 4599995433 23333466788899999999
Q ss_pred EEccCCCeEEEEEe
Q 004217 242 HFHPHAAPLLLTAE 255 (767)
Q Consensus 242 aFSPDG~~LlaSgs 255 (767)
+|++||.+|+++|.
T Consensus 258 ~fS~~G~~LlSGG~ 271 (792)
T KOG1963|consen 258 SFSSDGAYLLSGGR 271 (792)
T ss_pred EEecCCceEeeccc
Confidence 99999999988875
No 232
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.76 E-value=2.5e-08 Score=109.84 Aligned_cols=175 Identities=16% Similarity=0.141 Sum_probs=141.5
Q ss_pred CcceEEEEEEcCCCEEEEEeCCCeEEEEeCCCCCCC--------------------------------C----------C
Q 004217 69 SFSQIFEAGRDARRGLASWVEAESLHHLRPKYCPLS--------------------------------P----------P 106 (767)
Q Consensus 69 s~s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~L~--------------------------------g----------H 106 (767)
.|.+.-+-...+|+.|+-+...|-|-.+|..+..|. + .
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtElHClk~ 208 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTELHCLKR 208 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCCCcEEeehhh
Confidence 344666777788888888888888877776654211 1 1
Q ss_pred CCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEE
Q 004217 107 PRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIG 186 (767)
Q Consensus 107 ~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~ 186 (767)
...|..+.|-|.--+|++++..|.++--|+.+|+.+..+..-.+.+..++-+| -+..+-.|...|+|.+|.-...+++.
T Consensus 209 ~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP-~NaVih~GhsnGtVSlWSP~skePLv 287 (545)
T KOG1272|consen 209 HIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNP-YNAVIHLGHSNGTVSLWSPNSKEPLV 287 (545)
T ss_pred cCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCC-ccceEEEcCCCceEEecCCCCcchHH
Confidence 23577788888888899999999999999999999998888888899999999 77889999999999999998877765
Q ss_pred e-ecCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCC
Q 004217 187 S-RDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAA 248 (767)
Q Consensus 187 ~-l~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~ 248 (767)
. +.|.++|.+|+++++|+|+|+++-|+ ++|||+++...+. .... ......++||..|-
T Consensus 288 KiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~---t~~t-p~~a~~ls~Sqkgl 347 (545)
T KOG1272|consen 288 KILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLH---TYRT-PHPASNLSLSQKGL 347 (545)
T ss_pred HHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccc---eeec-CCCccccccccccc
Confidence 4 67999999999999999999999655 9999999887544 2222 45677889998776
No 233
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.76 E-value=3e-06 Score=96.22 Aligned_cols=188 Identities=11% Similarity=0.106 Sum_probs=117.4
Q ss_pred CeEEEEECCCCCe-EEEEeCC---CeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCc-EEEEEeCC--CeEEEEECCC
Q 004217 109 STIAAAFSPDGKT-LASTHGD---HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPT-IIASGSLD--HEVRLWNAST 181 (767)
Q Consensus 109 sVtsVaFSpDG~~-LASgs~D---GtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~-lLaSgS~D--GtVrIWDl~t 181 (767)
.+....|||||+. ++..+.+ ..|.++|+.+++..... ...+......|+| |++ ++++.+.+ ..|.++|+.+
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~~~g~~~~~~~SP-DG~~la~~~~~~g~~~Iy~~dl~~ 266 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-SSQGMLVVSDVSK-DGSKLLLTMAPKGQPDIYLYDTNT 266 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe-cCCCcEEeeEECC-CCCEEEEEEccCCCcEEEEEECCC
Confidence 6789999999985 6654443 56999999988754433 3455566788999 665 44455444 4678889888
Q ss_pred CeEEEeecCCCCeEEEEEcCCCCEEEEEECC----cEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEeeC
Q 004217 182 AECIGSRDFYRPIASIAFHASGELLAVASGH----KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVN 257 (767)
Q Consensus 182 g~~i~~l~h~~~VtsVafSPdG~~LAsgSdd----~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgsvw 257 (767)
++...............|+|||+.|+..++. .|+++|+.+++..+ .... .. ....|||||++|+.+....
T Consensus 267 g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~r---lt~~-g~--~~~~~SPDG~~Ia~~~~~~ 340 (419)
T PRK04043 267 KTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQ---VVFH-GK--NNSSVSTYKNYIVYSSRET 340 (419)
T ss_pred CcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEe---CccC-CC--cCceECCCCCEEEEEEcCC
Confidence 8755544444334456899999988888753 29999998776533 1111 11 1248999999998877422
Q ss_pred CcCCCCcceeEeecCCCccCCCCeEEEecCCCCCCCceeeccCCCCCCceeeEEecCCCEEEEeec
Q 004217 258 DLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHT 323 (767)
Q Consensus 258 dl~s~~~~~~l~t~sG~~~~p~~~v~l~~~~Ssd~~~L~sg~~~~slpil~psFSpDg~rIva~~~ 323 (767)
+-. +.. ....+++.+...+....|..+. ....|.|+|||+.|+....
T Consensus 341 ~~~-------------~~~-~~~~I~v~d~~~g~~~~LT~~~-----~~~~p~~SPDG~~I~f~~~ 387 (419)
T PRK04043 341 NNE-------------FGK-NTFNLYLISTNSDYIRRLTANG-----VNQFPRFSSDGGSIMFIKY 387 (419)
T ss_pred Ccc-------------cCC-CCcEEEEEECCCCCeEECCCCC-----CcCCeEECCCCCEEEEEEc
Confidence 111 000 0123444444444333332221 1225999999999998543
No 234
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.74 E-value=2.3e-08 Score=110.11 Aligned_cols=168 Identities=17% Similarity=0.197 Sum_probs=136.0
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCCCC----CCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEE
Q 004217 79 DARRGLASWVEAESLHHLRPKYCPL----SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWV 154 (767)
Q Consensus 79 d~g~~LaSgs~DgsIrlWd~~t~~L----~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~s 154 (767)
..--.|+++++.|-++.-|+.++++ ..-.+.+..++-+|-...+-.|...|+|.+|.....+++..+..|.++|.+
T Consensus 219 PyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~s 298 (545)
T KOG1272|consen 219 PYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSS 298 (545)
T ss_pred chhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcce
Confidence 3445688889999999999999854 355678999999998889999999999999999999988888899999999
Q ss_pred EEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEECCcEEEEE-cCCCc-cccCCeEEe
Q 004217 155 VRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWR-YNMRE-ETSSPRIVL 232 (767)
Q Consensus 155 LafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSdd~V~VWD-l~t~~-~~~~~~~l~ 232 (767)
|++.+ +++++++.+.|..++|||++....+.++........++||..| +||.+.++.|.||. .-.+. ... ....
T Consensus 299 iAv~~-~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqkg-lLA~~~G~~v~iw~d~~~~s~~~~--~pYm 374 (545)
T KOG1272|consen 299 IAVDR-GGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKG-LLALSYGDHVQIWKDALKGSGHGE--TPYM 374 (545)
T ss_pred EEECC-CCcEEeecccccceeEeeeccccccceeecCCCcccccccccc-ceeeecCCeeeeehhhhcCCCCCC--cchh
Confidence 99999 9999999999999999999998877776656677888888665 67777777899994 32221 111 1223
Q ss_pred cC--CCCeEEEEEccCCCeE
Q 004217 233 RT--RRSLRAVHFHPHAAPL 250 (767)
Q Consensus 233 ~h--~~~VtsVaFSPDG~~L 250 (767)
.| ...|..+.|.|-...|
T Consensus 375 ~H~~~~~V~~l~FcP~EDvL 394 (545)
T KOG1272|consen 375 NHRCGGPVEDLRFCPYEDVL 394 (545)
T ss_pred hhccCcccccceeccHHHee
Confidence 33 5689999999987733
No 235
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.71 E-value=6.1e-07 Score=95.49 Aligned_cols=162 Identities=14% Similarity=0.134 Sum_probs=112.7
Q ss_pred CCeEEEEeCCCCC---CCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECC-CCeEEEEEccCCCCcEEEEEccCCC-cE
Q 004217 90 AESLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQ-TGSCLKVLHGHRRTPWVVRFHPLNP-TI 164 (767)
Q Consensus 90 DgsIrlWd~~t~~---L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~-tg~~l~~L~gH~~~V~sLafsP~dg-~l 164 (767)
-+++.+||-.... -..-..+|.+|.+++| +|++.- .+.|+||... +.+.++.+..-..+=--++..|..+ .+
T Consensus 74 pNkviIWDD~k~~~i~el~f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~ 150 (346)
T KOG2111|consen 74 PNKVIIWDDLKERCIIELSFNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSL 150 (346)
T ss_pred CceEEEEecccCcEEEEEEeccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceE
Confidence 4568888843331 1245677999999865 555544 5699999987 4555666543221111233444223 33
Q ss_pred EEE-EeCCCeEEEEECCCCeE---EEeecCCCCeEEEEEcCCCCEEEEEECCc--EEEEEcCCCccccCCeEEecCCCCe
Q 004217 165 IAS-GSLDHEVRLWNASTAEC---IGSRDFYRPIASIAFHASGELLAVASGHK--LYIWRYNMREETSSPRIVLRTRRSL 238 (767)
Q Consensus 165 LaS-gS~DGtVrIWDl~tg~~---i~~l~h~~~VtsVafSPdG~~LAsgSdd~--V~VWDl~t~~~~~~~~~l~~h~~~V 238 (767)
|+. |-.-|.|.|-|+...+. .....|...|.|++.+-+|..+|++|..+ |+|||..+++.+...+ .......|
T Consensus 151 LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~R-RG~d~A~i 229 (346)
T KOG2111|consen 151 LAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELR-RGVDRADI 229 (346)
T ss_pred EEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeee-cCCchheE
Confidence 433 55679999999987665 55567999999999999999999999655 9999999998766211 11235689
Q ss_pred EEEEEccCCCeEEEEEe
Q 004217 239 RAVHFHPHAAPLLLTAE 255 (767)
Q Consensus 239 tsVaFSPDG~~LlaSgs 255 (767)
++++||||+.+|+++++
T Consensus 230 y~iaFSp~~s~LavsSd 246 (346)
T KOG2111|consen 230 YCIAFSPNSSWLAVSSD 246 (346)
T ss_pred EEEEeCCCccEEEEEcC
Confidence 99999999998888775
No 236
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.68 E-value=1.2e-06 Score=99.00 Aligned_cols=157 Identities=12% Similarity=0.216 Sum_probs=117.8
Q ss_pred EEEEECC-CCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec
Q 004217 111 IAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD 189 (767)
Q Consensus 111 tsVaFSp-DG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~ 189 (767)
.+++++. ...++ +++....|+-++++.|..+..|....+.+++|..++ -..+|++|+.||.|-.||.++...+..+.
T Consensus 137 RDm~y~~~scDly-~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~-~hgLla~Gt~~g~VEfwDpR~ksrv~~l~ 214 (703)
T KOG2321|consen 137 RDMKYHKPSCDLY-LVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINE-EHGLLACGTEDGVVEFWDPRDKSRVGTLD 214 (703)
T ss_pred ccccccCCCccEE-EeecCcceEEEEccccccccccccccccceeeeecC-ccceEEecccCceEEEecchhhhhheeee
Confidence 3455544 33344 444445788899999999999988889999999999 78899999999999999999887776654
Q ss_pred CC------------CCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccCCeEEecC--CCCeEEEEEccC--CCeEEE
Q 004217 190 FY------------RPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRT--RRSLRAVHFHPH--AAPLLL 252 (767)
Q Consensus 190 h~------------~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h--~~~VtsVaFSPD--G~~Lla 252 (767)
.. ..|+++.|+.+|-.+++|...+ +.|||+++.+.+. ...| .-+|..+.|.+. +..+++
T Consensus 215 ~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~----~kdh~~e~pi~~l~~~~~~~q~~v~S 290 (703)
T KOG2321|consen 215 AASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLL----VKDHGYELPIKKLDWQDTDQQNKVVS 290 (703)
T ss_pred cccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCcee----ecccCCccceeeecccccCCCceEEe
Confidence 22 2399999999999999998655 9999999987644 4555 557889999776 343444
Q ss_pred EEe----eCCcCCCCcceeEeecCC
Q 004217 253 TAE----VNDLDSSESSLTLATSPG 273 (767)
Q Consensus 253 Sgs----vwdl~s~~~~~~l~t~sG 273 (767)
.-+ +||-.++.....+....+
T Consensus 291 ~Dk~~~kiWd~~~Gk~~asiEpt~~ 315 (703)
T KOG2321|consen 291 MDKRILKIWDECTGKPMASIEPTSD 315 (703)
T ss_pred cchHHhhhcccccCCceeeccccCC
Confidence 333 888887776655554444
No 237
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.66 E-value=1e-06 Score=95.75 Aligned_cols=173 Identities=18% Similarity=0.149 Sum_probs=132.3
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCCC-----CC--CCCCCeEEEEECC-CCCeEEEEeCC--CeEEEEECCCCeEEEEEccC
Q 004217 79 DARRGLASWVEAESLHHLRPKYCP-----LS--PPPRSTIAAAFSP-DGKTLASTHGD--HTVKIIDCQTGSCLKVLHGH 148 (767)
Q Consensus 79 d~g~~LaSgs~DgsIrlWd~~t~~-----L~--gH~~sVtsVaFSp-DG~~LASgs~D--GtVrVWDl~tg~~l~~L~gH 148 (767)
.....|+++..+|.+++|..+.+- +. .-...+..+.-.+ +...+++|+.. ..++|||++..+.+..-+.-
T Consensus 113 ~~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNv 192 (412)
T KOG3881|consen 113 LADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNV 192 (412)
T ss_pred hcCCEEEEEecCCcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCC
Confidence 356778889999999999998442 11 2224577777777 44556668888 88999999988655543322
Q ss_pred ---------CCCcEEEEEccCC--CcEEEEEeCCCeEEEEECCCC-eEEEeec-CCCCeEEEEEcCCCCEEEEEECCc-E
Q 004217 149 ---------RRTPWVVRFHPLN--PTIIASGSLDHEVRLWNASTA-ECIGSRD-FYRPIASIAFHASGELLAVASGHK-L 214 (767)
Q Consensus 149 ---------~~~V~sLafsP~d--g~lLaSgS~DGtVrIWDl~tg-~~i~~l~-h~~~VtsVafSPdG~~LAsgSdd~-V 214 (767)
.-.++.+.|-+ + ...|+++..-+.|++||.+.+ +++..+. ...+++++...|.|++|++|...+ +
T Consensus 193 pnD~L~LrVPvW~tdi~Fl~-g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l 271 (412)
T KOG3881|consen 193 PNDRLGLRVPVWITDIRFLE-GSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQL 271 (412)
T ss_pred CCccccceeeeeeccceecC-CCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchh
Confidence 12456788988 6 789999999999999999975 4566665 467899999999999999998655 9
Q ss_pred EEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 004217 215 YIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA 254 (767)
Q Consensus 215 ~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSg 254 (767)
..||++.++... ..+.+-.+.|++|..+|.+++++.+|
T Consensus 272 ~~FD~r~~kl~g--~~~kg~tGsirsih~hp~~~~las~G 309 (412)
T KOG3881|consen 272 AKFDLRGGKLLG--CGLKGITGSIRSIHCHPTHPVLASCG 309 (412)
T ss_pred heecccCceeec--cccCCccCCcceEEEcCCCceEEeec
Confidence 999999998755 33667789999999999999555444
No 238
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.64 E-value=3.6e-07 Score=96.31 Aligned_cols=183 Identities=13% Similarity=0.029 Sum_probs=135.4
Q ss_pred eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC------CCCCCCCCeEEEEECC-CCCeEEEEeCCCeEEEEECC-CCeEEE
Q 004217 72 QIFEAGRDARRGLASWVEAESLHHLRPKYC------PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQ-TGSCLK 143 (767)
Q Consensus 72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~------~L~gH~~sVtsVaFSp-DG~~LASgs~DGtVrVWDl~-tg~~l~ 143 (767)
.+..-++..+..+++...+|.+.+-+.... +.++|.-.++..+|+. +.+++.+|+.|+.+.-||++ .++.+.
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~ 203 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW 203 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence 344556778888998888888885554432 4678999999999998 67899999999999999998 445554
Q ss_pred E-EccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCC-CeEEEeecCCCCeEEEEEcCCC--CEEEEEECCcEEEEEc
Q 004217 144 V-LHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST-AECIGSRDFYRPIASIAFHASG--ELLAVASGHKLYIWRY 219 (767)
Q Consensus 144 ~-L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~t-g~~i~~l~h~~~VtsVafSPdG--~~LAsgSdd~V~VWDl 219 (767)
. .+.|...|.+|.-+|..+.++++|+.|..|++||.++ ++++..-...+.|+.+.++|.- ++|+++..++.+|-+.
T Consensus 204 ~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~ 283 (339)
T KOG0280|consen 204 HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDS 283 (339)
T ss_pred ecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcCceEEEe
Confidence 3 5679999999999987888999999999999999994 7777777777999999999964 4566777788888887
Q ss_pred CCCcccc--CCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217 220 NMREETS--SPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (767)
Q Consensus 220 ~t~~~~~--~~~~l~~h~~~VtsVaFSPDG~~LlaSgs 255 (767)
....... .......|.+-++.-.|.... -+++||+
T Consensus 284 ~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~-~~lATCs 320 (339)
T KOG0280|consen 284 SDKVLEFQIVLPSDKIHDSLCYGGDWDSKD-SFLATCS 320 (339)
T ss_pred cccccchheeeeccccccceeecccccccc-ceeeeee
Confidence 6654321 112233455555555553321 2444544
No 239
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.64 E-value=5.8e-07 Score=108.32 Aligned_cols=164 Identities=18% Similarity=0.157 Sum_probs=114.3
Q ss_pred EeCCCC---CCCCCCCCeEEEEECCC-CCeEEEEeCCCeEEEEECCCC-------eEEEEEccCCCCcEEEEEccCCCcE
Q 004217 96 LRPKYC---PLSPPPRSTIAAAFSPD-GKTLASTHGDHTVKIIDCQTG-------SCLKVLHGHRRTPWVVRFHPLNPTI 164 (767)
Q Consensus 96 Wd~~t~---~L~gH~~sVtsVaFSpD-G~~LASgs~DGtVrVWDl~tg-------~~l~~L~gH~~~V~sLafsP~dg~l 164 (767)
|+.+.. .|..|...|..++.+++ +.++++|+.||+||+||+..- +...++.-....+.++.+.+ +++.
T Consensus 1034 W~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~-~~~~ 1112 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCG-NGDQ 1112 (1431)
T ss_pred CCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEecc-CCCe
Confidence 555433 47789999999999884 499999999999999998641 22333433467788999998 8899
Q ss_pred EEEEeCCCeEEEEECCCCe-------EEEee--cCCCCeE-EEEEcCC-CC-EEEEEEC-CcEEEEEcCCCccccCCeEE
Q 004217 165 IASGSLDHEVRLWNASTAE-------CIGSR--DFYRPIA-SIAFHAS-GE-LLAVASG-HKLYIWRYNMREETSSPRIV 231 (767)
Q Consensus 165 LaSgS~DGtVrIWDl~tg~-------~i~~l--~h~~~Vt-sVafSPd-G~-~LAsgSd-d~V~VWDl~t~~~~~~~~~l 231 (767)
+|.++.||.|++.++...+ +.+.. ...+.+. .-+|... +. .|+.+.+ .+|..||+++....+.....
T Consensus 1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~ 1192 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQ 1192 (1431)
T ss_pred EEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcC
Confidence 9999999999999987521 12221 2233333 3334332 23 5555554 55999999988765522222
Q ss_pred ecCCCCeEEEEEccCCCeEEEEEe-----eCCcCC
Q 004217 232 LRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDS 261 (767)
Q Consensus 232 ~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s 261 (767)
. -.+.|++++.+|.+.+++++.+ .||++.
T Consensus 1193 ~-~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF 1226 (1431)
T KOG1240|consen 1193 L-RHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRF 1226 (1431)
T ss_pred c-cccceeEEEecCCceEEEEecCCceEEEEEeec
Confidence 2 2478999999999998887654 888884
No 240
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.64 E-value=3.4e-06 Score=94.23 Aligned_cols=167 Identities=17% Similarity=0.192 Sum_probs=114.3
Q ss_pred EEEeCCCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccC
Q 004217 85 ASWVEAESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPL 160 (767)
Q Consensus 85 aSgs~DgsIrlWd~~t~~----L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~ 160 (767)
++-..++.|.+.|..+.+ +......-..+.|++||+++++++.|+.|.++|+.+++.+.+++.- .....+++++
T Consensus 10 V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G-~~~~~i~~s~- 87 (369)
T PF02239_consen 10 VVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG-GNPRGIAVSP- 87 (369)
T ss_dssp EEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S-SEEEEEEE---
T ss_pred EEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC-CCcceEEEcC-
Confidence 455678889999988764 2222222345789999999999999999999999999999988754 3467899999
Q ss_pred CCcEEEEE-eCCCeEEEEECCCCeEEEeec--------CCCCeEEEEEcCCCCEEEEEEC--CcEEEEEcCCCccccCCe
Q 004217 161 NPTIIASG-SLDHEVRLWNASTAECIGSRD--------FYRPIASIAFHASGELLAVASG--HKLYIWRYNMREETSSPR 229 (767)
Q Consensus 161 dg~lLaSg-S~DGtVrIWDl~tg~~i~~l~--------h~~~VtsVafSPdG~~LAsgSd--d~V~VWDl~t~~~~~~~~ 229 (767)
++++++.+ ..++.+.++|.++.+.++.+. ....+..+..+|....+++.-. +.|.+.|+...+... .
T Consensus 88 DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~--~ 165 (369)
T PF02239_consen 88 DGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLK--V 165 (369)
T ss_dssp TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEE--E
T ss_pred CCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccc--e
Confidence 77777765 468999999999999988754 2346778888898886666654 348788877664432 2
Q ss_pred EEecCCCCeEEEEEccCCCeEEEEEe
Q 004217 230 IVLRTRRSLRAVHFHPHAAPLLLTAE 255 (767)
Q Consensus 230 ~l~~h~~~VtsVaFSPDG~~LlaSgs 255 (767)
.............|+|++++++++..
T Consensus 166 ~~i~~g~~~~D~~~dpdgry~~va~~ 191 (369)
T PF02239_consen 166 TTIKVGRFPHDGGFDPDGRYFLVAAN 191 (369)
T ss_dssp EEEE--TTEEEEEE-TTSSEEEEEEG
T ss_pred eeecccccccccccCcccceeeeccc
Confidence 23344567788999999999887654
No 241
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=98.62 E-value=1.1e-06 Score=102.21 Aligned_cols=171 Identities=18% Similarity=0.194 Sum_probs=123.3
Q ss_pred CEEEEEeCCCeEEEEeCCCCC-------C--C-------CCCCCeEEEEECC-CCCeEEEEeCCCeEEEEECCCC---e-
Q 004217 82 RGLASWVEAESLHHLRPKYCP-------L--S-------PPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTG---S- 140 (767)
Q Consensus 82 ~~LaSgs~DgsIrlWd~~t~~-------L--~-------gH~~sVtsVaFSp-DG~~LASgs~DGtVrVWDl~tg---~- 140 (767)
..+++++.||+|..|+.+.-. + . .....+++++|.+ +...++.|+.+|.|..-+-... .
T Consensus 306 ~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~ 385 (555)
T KOG1587|consen 306 TEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPE 385 (555)
T ss_pred CceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccc
Confidence 569999999999999876421 0 1 1234689999999 7788999999999887443322 1
Q ss_pred ----EEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECC-CCeEEEeec-CCCCeEEEEEcCCCC-EEEEEECCc
Q 004217 141 ----CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAS-TAECIGSRD-FYRPIASIAFHASGE-LLAVASGHK 213 (767)
Q Consensus 141 ----~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~-tg~~i~~l~-h~~~VtsVafSPdG~-~LAsgSdd~ 213 (767)
....+..|.+.|.++.++|....+|++++ |.+|+||... ...++..+. +...+++++|||-.. .|+++..++
T Consensus 386 ~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G 464 (555)
T KOG1587|consen 386 VSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDG 464 (555)
T ss_pred ccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCC
Confidence 12345568899999999998778888877 9999999987 555555544 556699999999876 555555444
Q ss_pred -EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 004217 214 -LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA 254 (767)
Q Consensus 214 -V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSg 254 (767)
|.+||+....... .....-+....+.+.|+++|+.|+++.
T Consensus 465 ~l~iWDLl~~~~~P-v~s~~~~~~~l~~~~~s~~g~~lavGd 505 (555)
T KOG1587|consen 465 NLDIWDLLQDDEEP-VLSQKVCSPALTRVRWSPNGKLLAVGD 505 (555)
T ss_pred ceehhhhhccccCC-cccccccccccceeecCCCCcEEEEec
Confidence 9999997665422 222333456678888999999655543
No 242
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.61 E-value=7.4e-07 Score=106.18 Aligned_cols=170 Identities=14% Similarity=0.119 Sum_probs=134.0
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCCCC---CCCCCC-----eEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCC
Q 004217 79 DARRGLASWVEAESLHHLRPKYCPL---SPPPRS-----TIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRR 150 (767)
Q Consensus 79 d~g~~LaSgs~DgsIrlWd~~t~~L---~gH~~s-----VtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~ 150 (767)
...+.++.+..++.+.+||.+...+ ..+... ..-+-++++.-++++|+--+.|.+|+....+.-..+.||.+
T Consensus 97 ~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG 176 (967)
T KOG0974|consen 97 EENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEG 176 (967)
T ss_pred hhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceecccCC
Confidence 4567788889999999999987621 122222 23345677777899999999999999874443346899999
Q ss_pred CcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEE--eecCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccC
Q 004217 151 TPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIG--SRDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSS 227 (767)
Q Consensus 151 ~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~--~l~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~ 227 (767)
.|..+.|+- ++.++++.|+|.++|+|++.+.+... -++|...|..++|+|+ .+++++.|. +++|+.+.....
T Consensus 177 ~iF~i~~s~-dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~~l~-- 251 (967)
T KOG0974|consen 177 SIFSIVTSL-DGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNGTQLE-- 251 (967)
T ss_pred ceEEEEEcc-CCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEecccceeh--
Confidence 999999999 99999999999999999999988765 3789999999999999 888888766 999976654432
Q ss_pred CeEEecC-CCCeEEEEEccCCCeEEEEEe
Q 004217 228 PRIVLRT-RRSLRAVHFHPHAAPLLLTAE 255 (767)
Q Consensus 228 ~~~l~~h-~~~VtsVaFSPDG~~LlaSgs 255 (767)
.+.+| ...|..++.+++...+++.+.
T Consensus 252 --~y~~h~g~~iw~~~~~~~~~~~vT~g~ 278 (967)
T KOG0974|consen 252 --VYDEHSGKGIWKIAVPIGVIIKVTGGN 278 (967)
T ss_pred --hhhhhhhcceeEEEEcCCceEEEeecc
Confidence 45566 567999999988876666555
No 243
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.60 E-value=6.1e-07 Score=101.19 Aligned_cols=166 Identities=14% Similarity=0.179 Sum_probs=127.6
Q ss_pred EEEEeCCCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEc------cCCC---
Q 004217 84 LASWVEAESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH------GHRR--- 150 (767)
Q Consensus 84 LaSgs~DgsIrlWd~~t~~----L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~------gH~~--- 150 (767)
|+.+.....|.-++++.+. +....+.++++..++-..+|++|+.||.|..||.++...+.++. .|.+
T Consensus 148 ly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~ 227 (703)
T KOG2321|consen 148 LYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDA 227 (703)
T ss_pred EEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccc
Confidence 4445555567777888774 44566889999999988999999999999999998776555442 2333
Q ss_pred --CcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecC--CCCeEEEEEcCCC--CEEEEEECCcEEEEEcCCCcc
Q 004217 151 --TPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDF--YRPIASIAFHASG--ELLAVASGHKLYIWRYNMREE 224 (767)
Q Consensus 151 --~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h--~~~VtsVafSPdG--~~LAsgSdd~V~VWDl~t~~~ 224 (767)
.|+++.|+- ++-.++.|..+|.|.|||+++.+++....| .-+|..+.|.+.+ ..|++....-++|||-.+++.
T Consensus 228 ~~svTal~F~d-~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~ 306 (703)
T KOG2321|consen 228 APSVTALKFRD-DGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKP 306 (703)
T ss_pred cCcceEEEecC-CceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEecchHHhhhcccccCCc
Confidence 499999988 789999999999999999999998877665 4578899997763 455555444499999998875
Q ss_pred ccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 004217 225 TSSPRIVLRTRRSLRAVHFHPHAAPLLLTA 254 (767)
Q Consensus 225 ~~~~~~l~~h~~~VtsVaFSPDG~~LlaSg 254 (767)
.. .......++.+++-|++-.++++-
T Consensus 307 ~a----siEpt~~lND~C~~p~sGm~f~An 332 (703)
T KOG2321|consen 307 MA----SIEPTSDLNDFCFVPGSGMFFTAN 332 (703)
T ss_pred ee----eccccCCcCceeeecCCceEEEec
Confidence 33 344556699999999988555543
No 244
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.60 E-value=4.3e-07 Score=96.84 Aligned_cols=138 Identities=17% Similarity=0.266 Sum_probs=104.6
Q ss_pred EEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec-C
Q 004217 112 AAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-F 190 (767)
Q Consensus 112 sVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~-h 190 (767)
-.+|||+|+++|+++.- .+.|-|.++-+..+.|. --+.|.-+.|..+....+.....|+.|.+|++...+-...+. .
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~-cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg 90 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFL-CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEG 90 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHH-HHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccC
Confidence 46899999999999876 78888888766444333 245677899998444556666789999999999888777765 5
Q ss_pred CCCeEEEEEcCCCCEEEEEEC--CcEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217 191 YRPIASIAFHASGELLAVASG--HKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (767)
Q Consensus 191 ~~~VtsVafSPdG~~LAsgSd--d~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs 255 (767)
...+.+++|||||+.|...+. -+|.||.+.+.+... +...+..+..++|+|||++.+....
T Consensus 91 ~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~----~~~pK~~~kg~~f~~dg~f~ai~sR 153 (447)
T KOG4497|consen 91 QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL----LPHPKTNVKGYAFHPDGQFCAILSR 153 (447)
T ss_pred CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE----ecccccCceeEEECCCCceeeeeec
Confidence 678899999999987777664 349999999877533 3333556789999999997766554
No 245
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.58 E-value=3.7e-06 Score=93.97 Aligned_cols=140 Identities=14% Similarity=0.154 Sum_probs=98.6
Q ss_pred CeE-EEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCCCCeEEEE
Q 004217 120 KTL-ASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIA 198 (767)
Q Consensus 120 ~~L-ASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~~VtsVa 198 (767)
+++ ++-..++.|.|.|..+.+.+..+.........+.|+| |+++++..+.|+.|.++|+.+.+.++.+........++
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~-Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~ 84 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSP-DGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIA 84 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT--SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecC-CCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEE
Confidence 344 4455689999999999999999976554445578999 89999999999999999999999999998888889999
Q ss_pred EcCCCCEEEEEE--CCcEEEEEcCCCccccCCeEEe----cCCCCeEEEEEccCCCeEEEEE----eeCCcC
Q 004217 199 FHASGELLAVAS--GHKLYIWRYNMREETSSPRIVL----RTRRSLRAVHFHPHAAPLLLTA----EVNDLD 260 (767)
Q Consensus 199 fSPdG~~LAsgS--dd~V~VWDl~t~~~~~~~~~l~----~h~~~VtsVaFSPDG~~LlaSg----svwdl~ 260 (767)
+++||++++++. .+.+.++|.++.+.+....... .....+.+|..+|....++++- ++|-++
T Consensus 85 ~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVd 156 (369)
T PF02239_consen 85 VSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVD 156 (369)
T ss_dssp E--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEE
T ss_pred EcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEE
Confidence 999999999887 4669999999987655111100 0235678898999988666653 356444
No 246
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.57 E-value=2.9e-05 Score=84.26 Aligned_cols=165 Identities=13% Similarity=0.181 Sum_probs=119.5
Q ss_pred CCeEEEEeCCCC-------CCCCCCCCeEEEEECCCCCeEEEEeCC---CeEEEEECCC--CeEE--EEEccCCCCcEEE
Q 004217 90 AESLHHLRPKYC-------PLSPPPRSTIAAAFSPDGKTLASTHGD---HTVKIIDCQT--GSCL--KVLHGHRRTPWVV 155 (767)
Q Consensus 90 DgsIrlWd~~t~-------~L~gH~~sVtsVaFSpDG~~LASgs~D---GtVrVWDl~t--g~~l--~~L~gH~~~V~sL 155 (767)
++-|.+|++.+. ++..+.+..+-|+|+|++++|.++..+ |.|-.|.++. |+.. ..........+.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 566889988743 355788899999999999999988654 6677776664 5532 2222233444889
Q ss_pred EEccCCCcEEEEEeC-CCeEEEEECCC-CeE---EEeecCCCC----------eEEEEEcCCCCEEEEEE--CCcEEEEE
Q 004217 156 RFHPLNPTIIASGSL-DHEVRLWNAST-AEC---IGSRDFYRP----------IASIAFHASGELLAVAS--GHKLYIWR 218 (767)
Q Consensus 156 afsP~dg~lLaSgS~-DGtVrIWDl~t-g~~---i~~l~h~~~----------VtsVafSPdG~~LAsgS--dd~V~VWD 218 (767)
++++ ++++++++.. -|.|.++-++. |.. +....|... +.+..|.|++++|++.. .|+|.+|+
T Consensus 95 svd~-~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~ 173 (346)
T COG2706 95 SVDE-DGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYD 173 (346)
T ss_pred EECC-CCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEE
Confidence 9999 8888888775 57899999876 433 233445444 88899999999999987 57799999
Q ss_pred cCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217 219 YNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (767)
Q Consensus 219 l~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs 255 (767)
+..++..............-+.|.|+|++++..+.++
T Consensus 174 ~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~E 210 (346)
T COG2706 174 LDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNE 210 (346)
T ss_pred cccCccccccccccCCCCCcceEEEcCCCcEEEEEec
Confidence 9976653322223345667899999999997777665
No 247
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.56 E-value=1.1e-06 Score=95.72 Aligned_cols=162 Identities=14% Similarity=0.114 Sum_probs=127.7
Q ss_pred CEEEEEeCC--CeEEEEeCCCCC--CC---------CC--CCCeEEEEECCC--CCeEEEEeCCCeEEEEECCCC-eEEE
Q 004217 82 RGLASWVEA--ESLHHLRPKYCP--LS---------PP--PRSTIAAAFSPD--GKTLASTHGDHTVKIIDCQTG-SCLK 143 (767)
Q Consensus 82 ~~LaSgs~D--gsIrlWd~~t~~--L~---------gH--~~sVtsVaFSpD--G~~LASgs~DGtVrVWDl~tg-~~l~ 143 (767)
..+++|+.. ..+++||++.++ +. +- +--++++.|-+. ...||++..-+.|++||.+.+ +++.
T Consensus 162 ~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~ 241 (412)
T KOG3881|consen 162 YIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVA 241 (412)
T ss_pred ceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCccee
Confidence 345557777 778999988762 11 11 123678999886 889999999999999999875 4677
Q ss_pred EEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEe-e-cCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcC
Q 004217 144 VLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-R-DFYRPIASIAFHASGELLAVASGHK-LYIWRYN 220 (767)
Q Consensus 144 ~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~-l-~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~ 220 (767)
.|.--...+.++...| +++++++|..-+.+..||++.++.... + +..+.|+++-.+|.+++||+++=|+ |+|+|+.
T Consensus 242 ~fd~~E~~is~~~l~p-~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~k 320 (412)
T KOG3881|consen 242 QFDFLENPISSTGLTP-SGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIK 320 (412)
T ss_pred EeccccCcceeeeecC-CCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecc
Confidence 7777788999999999 999999999999999999999988776 4 4678999999999999999999777 9999999
Q ss_pred CCccccCCeEEecCCCCeEEEEEccCCC
Q 004217 221 MREETSSPRIVLRTRRSLRAVHFHPHAA 248 (767)
Q Consensus 221 t~~~~~~~~~l~~h~~~VtsVaFSPDG~ 248 (767)
+.+.+.... -...++.|.+.++-+
T Consensus 321 trkll~kvY----vKs~lt~il~~~~~n 344 (412)
T KOG3881|consen 321 TRKLLHKVY----VKSRLTFILLRDDVN 344 (412)
T ss_pred cchhhhhhh----hhccccEEEecCCcc
Confidence 976654111 234567777765543
No 248
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.54 E-value=4.4e-05 Score=84.29 Aligned_cols=164 Identities=14% Similarity=0.188 Sum_probs=110.0
Q ss_pred CeEEEEeC--CCCCCC-----CCCCCeEEEEECCCCCeEEEEeC----CCeEEEEECCC--Ce--EEEEEccCCCCcEEE
Q 004217 91 ESLHHLRP--KYCPLS-----PPPRSTIAAAFSPDGKTLASTHG----DHTVKIIDCQT--GS--CLKVLHGHRRTPWVV 155 (767)
Q Consensus 91 gsIrlWd~--~t~~L~-----gH~~sVtsVaFSpDG~~LASgs~----DGtVrVWDl~t--g~--~l~~L~gH~~~V~sL 155 (767)
+.|..|++ ++++|. .-......++++|++++|.+... ++.|..|++.. ++ .+............+
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i 92 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHI 92 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEE
T ss_pred CcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEE
Confidence 56666666 333222 12345677899999999999877 56899998875 33 333343344566789
Q ss_pred EEccCCCcEEEEEe-CCCeEEEEECCC-CeEEEe---ec-----------CCCCeEEEEEcCCCCEEEEEE--CCcEEEE
Q 004217 156 RFHPLNPTIIASGS-LDHEVRLWNAST-AECIGS---RD-----------FYRPIASIAFHASGELLAVAS--GHKLYIW 217 (767)
Q Consensus 156 afsP~dg~lLaSgS-~DGtVrIWDl~t-g~~i~~---l~-----------h~~~VtsVafSPdG~~LAsgS--dd~V~VW 217 (767)
+++| ++++++.+. .+|+|.++++.. +..... +. ......++.|+|+|+++++.. .|+|++|
T Consensus 93 ~~~~-~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~ 171 (345)
T PF10282_consen 93 AVDP-DGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVY 171 (345)
T ss_dssp EECT-TSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEE
T ss_pred EEec-CCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEE
Confidence 9999 777777766 589999999987 443322 21 234578999999999999887 4569999
Q ss_pred EcCCCcc-ccC-CeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217 218 RYNMREE-TSS-PRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (767)
Q Consensus 218 Dl~t~~~-~~~-~~~l~~h~~~VtsVaFSPDG~~LlaSgs 255 (767)
++..... +.. ..........-+.+.|+||++++.+..+
T Consensus 172 ~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e 211 (345)
T PF10282_consen 172 DIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNE 211 (345)
T ss_dssp EE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEET
T ss_pred EEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecC
Confidence 9977652 221 1123345677899999999998888765
No 249
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.52 E-value=2.9e-06 Score=89.69 Aligned_cols=163 Identities=12% Similarity=0.151 Sum_probs=120.5
Q ss_pred EEEEEeCCCeEEEEeCCCCC-------CCCCCC---CeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEE--EEEccCCC
Q 004217 83 GLASWVEAESLHHLRPKYCP-------LSPPPR---STIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCL--KVLHGHRR 150 (767)
Q Consensus 83 ~LaSgs~DgsIrlWd~~t~~-------L~gH~~---sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l--~~L~gH~~ 150 (767)
.++.....|.|.++...... +....- ...++.|++.+..++++-.+|.+.+-+....... +.++.|.-
T Consensus 87 ~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~ 166 (339)
T KOG0280|consen 87 NLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEF 166 (339)
T ss_pred eeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccce
Confidence 45556667778777765432 221111 2457899999999999999999997776555443 47899999
Q ss_pred CcEEEEEccCCCcEEEEEeCCCeEEEEECCC-CeEEEe--ecCCCCeEEEEEcC-CCCEEEEEECCc-EEEEEcCCCccc
Q 004217 151 TPWVVRFHPLNPTIIASGSLDHEVRLWNAST-AECIGS--RDFYRPIASIAFHA-SGELLAVASGHK-LYIWRYNMREET 225 (767)
Q Consensus 151 ~V~sLafsP~dg~lLaSgS~DGtVrIWDl~t-g~~i~~--l~h~~~VtsVafSP-dG~~LAsgSdd~-V~VWDl~t~~~~ 225 (767)
.++-..|+..+.+++.+|+.|+.+..||++. ++.+.. ..|...|.+|.-+| .+.+|++|+.|. |++||.|+-.+.
T Consensus 167 E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kP 246 (339)
T KOG0280|consen 167 EAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKP 246 (339)
T ss_pred eeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCc
Confidence 9999999988889999999999999999993 444433 34888899998776 467999999655 999999955432
Q ss_pred cCCeEEecCCCCeEEEEEccCCC
Q 004217 226 SSPRIVLRTRRSLRAVHFHPHAA 248 (767)
Q Consensus 226 ~~~~~l~~h~~~VtsVaFSPDG~ 248 (767)
. ....-.+.|+.+.++|.-.
T Consensus 247 l---~~~~v~GGVWRi~~~p~~~ 266 (339)
T KOG0280|consen 247 L---FKAKVGGGVWRIKHHPEIF 266 (339)
T ss_pred c---ccCccccceEEEEecchhh
Confidence 2 2233457899999998654
No 250
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.52 E-value=2.7e-05 Score=85.98 Aligned_cols=183 Identities=15% Similarity=0.150 Sum_probs=121.1
Q ss_pred eEEEEEEcCCCEEEEEe-CCCeEEEEeCCC-CCC------C-----------CCCCCeEEEEECCCCCeEEEEeC-CCeE
Q 004217 72 QIFEAGRDARRGLASWV-EAESLHHLRPKY-CPL------S-----------PPPRSTIAAAFSPDGKTLASTHG-DHTV 131 (767)
Q Consensus 72 ~~~vA~sd~g~~LaSgs-~DgsIrlWd~~t-~~L------~-----------gH~~sVtsVaFSpDG~~LASgs~-DGtV 131 (767)
+.-++...+++.|+... .++.|.++++.. +.+ . .-....+++.|+|||++|++... ...|
T Consensus 89 p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v 168 (345)
T PF10282_consen 89 PCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRV 168 (345)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEE
T ss_pred cEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEE
Confidence 55677777888888776 588898888875 211 1 12345789999999999887643 3489
Q ss_pred EEEECCCCe--E--EEEEc-cCCCCcEEEEEccCCCcE-EEEEeCCCeEEEEECC--CCeEEE--eec-------CCCCe
Q 004217 132 KIIDCQTGS--C--LKVLH-GHRRTPWVVRFHPLNPTI-IASGSLDHEVRLWNAS--TAECIG--SRD-------FYRPI 194 (767)
Q Consensus 132 rVWDl~tg~--~--l~~L~-gH~~~V~sLafsP~dg~l-LaSgS~DGtVrIWDl~--tg~~i~--~l~-------h~~~V 194 (767)
.+|+++... . ...+. ........+.|+| ++++ ++....+++|.++++. +++... .+. .....
T Consensus 169 ~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~p-dg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 247 (345)
T PF10282_consen 169 YVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSP-DGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAP 247 (345)
T ss_dssp EEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-T-TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSE
T ss_pred EEEEEeCCCceEEEeeccccccCCCCcEEEEcC-CcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCc
Confidence 999997654 2 22232 2345688999999 6555 4556678999999988 443322 211 12367
Q ss_pred EEEEEcCCCCEEEEEEC--CcEEEEEcCCC-ccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217 195 ASIAFHASGELLAVASG--HKLYIWRYNMR-EETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (767)
Q Consensus 195 tsVafSPdG~~LAsgSd--d~V~VWDl~t~-~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs 255 (767)
..|+++|||++|.++.. +.|.+|+++.. ..+.............+.+.|+|+|++|+++..
T Consensus 248 ~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~ 311 (345)
T PF10282_consen 248 AEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQ 311 (345)
T ss_dssp EEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEET
T ss_pred eeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEec
Confidence 88999999999999874 45999999432 222212233333556899999999999988775
No 251
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.46 E-value=8e-07 Score=96.98 Aligned_cols=99 Identities=18% Similarity=0.337 Sum_probs=82.4
Q ss_pred CCCeEEEEeCCCC---CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEE-ccCCCCcEEEEEccCCCcE
Q 004217 89 EAESLHHLRPKYC---PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL-HGHRRTPWVVRFHPLNPTI 164 (767)
Q Consensus 89 ~DgsIrlWd~~t~---~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L-~gH~~~V~sLafsP~dg~l 164 (767)
+...+.+|+...+ .+.||-..+++|+|+||+++|+++..|..|||-....--.+..| -||+.-|..++.-+ +..
T Consensus 130 D~~~~di~s~~~~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~--~~~ 207 (390)
T KOG3914|consen 130 DVYSFDILSADSGRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD--NYL 207 (390)
T ss_pred CceeeeeecccccCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc--Cce
Confidence 4445667775533 47799999999999999999999999999999887655545444 68999999999976 567
Q ss_pred EEEEeCCCeEEEEECCCCeEEEeec
Q 004217 165 IASGSLDHEVRLWNASTAECIGSRD 189 (767)
Q Consensus 165 LaSgS~DGtVrIWDl~tg~~i~~l~ 189 (767)
|+|++.|++|++||+.+|+++..+.
T Consensus 208 LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 208 LLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred eeecCCCCcEEEEecccCCcccccc
Confidence 9999999999999999999987654
No 252
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.43 E-value=5.1e-05 Score=86.29 Aligned_cols=173 Identities=10% Similarity=0.034 Sum_probs=111.5
Q ss_pred EEEEEcCCCE-EEEEeC---CCeEEEEeCCCCC---CCCCCCCeEEEEECCCCCeEEEEeC---CCeEEEEECCCCeEEE
Q 004217 74 FEAGRDARRG-LASWVE---AESLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLASTHG---DHTVKIIDCQTGSCLK 143 (767)
Q Consensus 74 ~vA~sd~g~~-LaSgs~---DgsIrlWd~~t~~---L~gH~~sVtsVaFSpDG~~LASgs~---DGtVrVWDl~tg~~l~ 143 (767)
...++.+++. ++..+. +..|.++|+.+++ +....+.+....|||||+.|+.... +..|.++|+.+++ ..
T Consensus 192 ~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~-~~ 270 (419)
T PRK04043 192 FPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT-LT 270 (419)
T ss_pred eEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc-EE
Confidence 3445666664 554333 3458888887763 4455666778899999988765432 3578888988876 44
Q ss_pred EEccCCCCcEEEEEccCCCcEEEEEe-CCC--eEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEEC--------C
Q 004217 144 VLHGHRRTPWVVRFHPLNPTIIASGS-LDH--EVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG--------H 212 (767)
Q Consensus 144 ~L~gH~~~V~sLafsP~dg~lLaSgS-~DG--tVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSd--------d 212 (767)
.+..+........|+| |++.|+..+ ..+ .|.+.|+.+++..+....... ...|+|+|++|+.... +
T Consensus 271 ~LT~~~~~d~~p~~SP-DG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~ 347 (419)
T PRK04043 271 QITNYPGIDVNGNFVE-DDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKN--NSSVSTYKNYIVYSSRETNNEFGKN 347 (419)
T ss_pred EcccCCCccCccEECC-CCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCc--CceECCCCCEEEEEEcCCCcccCCC
Confidence 4544444344568999 666555544 333 577788888776554332222 2489999998877762 2
Q ss_pred --cEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217 213 --KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (767)
Q Consensus 213 --~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs 255 (767)
.|.+.|+.++.... +... .......|+|||+.++.+..
T Consensus 348 ~~~I~v~d~~~g~~~~----LT~~-~~~~~p~~SPDG~~I~f~~~ 387 (419)
T PRK04043 348 TFNLYLISTNSDYIRR----LTAN-GVNQFPRFSSDGGSIMFIKY 387 (419)
T ss_pred CcEEEEEECCCCCeEE----CCCC-CCcCCeEECCCCCEEEEEEc
Confidence 38888888775422 2222 23346899999998887754
No 253
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.41 E-value=1.1e-05 Score=86.92 Aligned_cols=253 Identities=14% Similarity=0.118 Sum_probs=157.1
Q ss_pred eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC---------CCCCC------------CCCeEEEEECCCCC--eEEEEeCC
Q 004217 72 QIFEAGRDARRGLASWVEAESLHHLRPKYC---------PLSPP------------PRSTIAAAFSPDGK--TLASTHGD 128 (767)
Q Consensus 72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~---------~L~gH------------~~sVtsVaFSpDG~--~LASgs~D 128 (767)
..++.+...|.+|++|..+|.|.++.-... .++.| ...|..+.|-++++ .++....|
T Consensus 28 is~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNd 107 (433)
T KOG1354|consen 28 ISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTND 107 (433)
T ss_pred eeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCC
Confidence 445667778999999999999988865421 23333 34688999998654 56777889
Q ss_pred CeEEEEECCCCe-----------------------------------EEEEE-ccCCCCcEEEEEccCCCcEEEEEeCCC
Q 004217 129 HTVKIIDCQTGS-----------------------------------CLKVL-HGHRRTPWVVRFHPLNPTIIASGSLDH 172 (767)
Q Consensus 129 GtVrVWDl~tg~-----------------------------------~l~~L-~gH~~~V~sLafsP~dg~lLaSgS~DG 172 (767)
.+|++|.+.... +.+.+ .+|+--|.++.++. |...++|+ .|=
T Consensus 108 ktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~Ns-D~Et~lSA-DdL 185 (433)
T KOG1354|consen 108 KTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNS-DKETFLSA-DDL 185 (433)
T ss_pred cceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecC-ccceEeec-cce
Confidence 999999874321 11111 25788899999999 88888875 578
Q ss_pred eEEEEECCC-CeEEEee---cC-----CCCeEEEEEcCCCC--EEEEEECCcEEEEEcCCCccccCCe------------
Q 004217 173 EVRLWNAST-AECIGSR---DF-----YRPIASIAFHASGE--LLAVASGHKLYIWRYNMREETSSPR------------ 229 (767)
Q Consensus 173 tVrIWDl~t-g~~i~~l---~h-----~~~VtsVafSPdG~--~LAsgSdd~V~VWDl~t~~~~~~~~------------ 229 (767)
.|.+|++.- .++.... .+ ..-|++..|||..- ++.+++.|.|++-|++.........
T Consensus 186 RINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~r 265 (433)
T KOG1354|consen 186 RINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSR 265 (433)
T ss_pred eeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcch
Confidence 899999874 2332222 12 23588899999653 4445556779999999543211000
Q ss_pred -EEecCCCCeEEEEEccCCCeEEE----EEeeCCcCCCCcceeEeecCCCccCCCCeEEEecCCCCCCCceeeccCCCCC
Q 004217 230 -IVLRTRRSLRAVHFHPHAAPLLL----TAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITP 304 (767)
Q Consensus 230 -~l~~h~~~VtsVaFSPDG~~Lla----Sgsvwdl~s~~~~~~l~t~sG~~~~p~~~v~l~~~~Ssd~~~L~sg~~~~sl 304 (767)
.+..--..|..+.|+++|++|++ +-.+||+.....+........+.. +.++ .+. ..+.-.
T Consensus 266 sffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr---~kLc----------~lY--EnD~If 330 (433)
T KOG1354|consen 266 SFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLR---SKLC----------SLY--ENDAIF 330 (433)
T ss_pred hhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHH---HHHH----------HHh--hccchh
Confidence 11112346889999999999887 556999863332222211111111 0000 000 011112
Q ss_pred CceeeEEecCCCEEEEeecCCCCCCcccccccccCCceeeeeccCCCCceeeee
Q 004217 305 PFLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQYELVL 358 (767)
Q Consensus 305 pil~psFSpDg~rIva~~~~~d~Gs~~~~~~~~ss~~~~l~~~~~~~~q~~~~~ 358 (767)
.-+-++|+.++.++.. +|-++.|..|+.+.|..+..-
T Consensus 331 dKFec~~sg~~~~v~T-----------------Gsy~n~frvf~~~~gsk~d~t 367 (433)
T KOG1354|consen 331 DKFECSWSGNDSYVMT-----------------GSYNNVFRVFNLARGSKEDFT 367 (433)
T ss_pred heeEEEEcCCcceEec-----------------ccccceEEEecCCCCcceeec
Confidence 2346889999999886 345566778886666555433
No 254
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.37 E-value=8.2e-05 Score=80.85 Aligned_cols=182 Identities=15% Similarity=0.145 Sum_probs=129.4
Q ss_pred eEEEEEEcCCCEEEEEe-CCCeEEEEeCCC-C------CCCCCCCC----------eEEEEECCCCCeEEEEeC-CCeEE
Q 004217 72 QIFEAGRDARRGLASWV-EAESLHHLRPKY-C------PLSPPPRS----------TIAAAFSPDGKTLASTHG-DHTVK 132 (767)
Q Consensus 72 ~~~vA~sd~g~~LaSgs-~DgsIrlWd~~t-~------~L~gH~~s----------VtsVaFSpDG~~LASgs~-DGtVr 132 (767)
..-+++.++++.|+++. ..+.|.++.++. + ++..|.+. +....|.|++++|++..- --.|.
T Consensus 91 p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~ 170 (346)
T COG2706 91 PCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIF 170 (346)
T ss_pred CeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEE
Confidence 46677888888888875 567788888865 3 23345555 899999999999988754 23799
Q ss_pred EEECCCCeEEE----EEccCCCCcEEEEEccCCCcEEEEE-eCCCeEEEEECCCC--eE--EEe-------ecCCCCeEE
Q 004217 133 IIDCQTGSCLK----VLHGHRRTPWVVRFHPLNPTIIASG-SLDHEVRLWNASTA--EC--IGS-------RDFYRPIAS 196 (767)
Q Consensus 133 VWDl~tg~~l~----~L~gH~~~V~sLafsP~dg~lLaSg-S~DGtVrIWDl~tg--~~--i~~-------l~h~~~Vts 196 (767)
+|+++.|+... .+ ........|.||| +++++... -.+++|.+|..... +. +.. +........
T Consensus 171 ~y~~~dg~L~~~~~~~v-~~G~GPRHi~FHp-n~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aa 248 (346)
T COG2706 171 LYDLDDGKLTPADPAEV-KPGAGPRHIVFHP-NGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAA 248 (346)
T ss_pred EEEcccCcccccccccc-CCCCCcceEEEcC-CCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeE
Confidence 99999876432 22 3445678899999 88876654 46999999998873 21 222 123456778
Q ss_pred EEEcCCCCEEEEEEC--CcEEEEEcCCCc-cccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217 197 IAFHASGELLAVASG--HKLYIWRYNMRE-ETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (767)
Q Consensus 197 VafSPdG~~LAsgSd--d~V~VWDl~t~~-~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs 255 (767)
|..++||++|.++.. +.|.+|.+.... .+........+...-+.+.|+++|++|+++..
T Consensus 249 Ihis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q 310 (346)
T COG2706 249 IHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQ 310 (346)
T ss_pred EEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEcc
Confidence 899999999999874 448888876542 22212223334555789999999999888876
No 255
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.35 E-value=8.7e-06 Score=92.50 Aligned_cols=140 Identities=11% Similarity=0.098 Sum_probs=121.0
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCCCC------CCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCc
Q 004217 79 DARRGLASWVEAESLHHLRPKYCPL------SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTP 152 (767)
Q Consensus 79 d~g~~LaSgs~DgsIrlWd~~t~~L------~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V 152 (767)
.+...++-|...|.|.+++...+++ ..|.+.|.++.++.+-..|.+++.|+.+..|+..+++.++.+++.+..+
T Consensus 68 ~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~ 147 (541)
T KOG4547|consen 68 LDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLV 147 (541)
T ss_pred CCceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCcc
Confidence 4556677788888999999887743 3799999999999999999999999999999999999999999999999
Q ss_pred EEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec-CCCCeEEEEEcCC-----CCEEEEEEC--CcEEEEEcCC
Q 004217 153 WVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHAS-----GELLAVASG--HKLYIWRYNM 221 (767)
Q Consensus 153 ~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~-h~~~VtsVafSPd-----G~~LAsgSd--d~V~VWDl~t 221 (767)
.+++.+| |+..+++++ ++|++||+++++.+..+. |.++|+++.|--+ |.++.++.. ..+.+|-++.
T Consensus 148 ~sl~is~-D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 148 SSLCISP-DGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred ceEEEcC-CCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 9999999 788998875 679999999999999875 8899999999877 777777763 3388887765
No 256
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.34 E-value=2e-05 Score=87.55 Aligned_cols=158 Identities=16% Similarity=0.086 Sum_probs=126.5
Q ss_pred cCcceeecccccceecCCcceEEEEEEcCCCEEEEEeCCC-eEEEEeCCCCC---CCCCCCCeEEEEECCCCCeEEEEeC
Q 004217 52 KHSSKRLLGETARKCSGSFSQIFEAGRDARRGLASWVEAE-SLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLASTHG 127 (767)
Q Consensus 52 ~~~sk~~wd~~~~~~~~s~s~~~vA~sd~g~~LaSgs~Dg-sIrlWd~~t~~---L~gH~~sVtsVaFSpDG~~LASgs~ 127 (767)
+....+.|+.-.................+...++.|..|+ .+.++|..+++ +.+.-+.|.++..++||++++.+..
T Consensus 342 kaFi~~~~~~~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNd 421 (668)
T COG4946 342 KAFIMRPWDGYSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVAND 421 (668)
T ss_pred cEEEECCCCCeeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcC
Confidence 3344555766655555444466666666777888999999 89999999874 5567788999999999999999999
Q ss_pred CCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCC----eEEEEECCCCeEEEeecCCCCeEEEEEcCCC
Q 004217 128 DHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDH----EVRLWNASTAECIGSRDFYRPIASIAFHASG 203 (767)
Q Consensus 128 DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DG----tVrIWDl~tg~~i~~l~h~~~VtsVafSPdG 203 (767)
...+.+.|+++|+....=+...+-|+.+.||| ++++++-+--+| .|+++|+.+++..........=.+-+|+|+|
T Consensus 422 r~el~vididngnv~~idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ 500 (668)
T COG4946 422 RFELWVIDIDNGNVRLIDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDG 500 (668)
T ss_pred ceEEEEEEecCCCeeEecccccceeEEEEEcC-CceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCC
Confidence 99999999999986655566677899999999 999999987765 5899999999988776655555678999999
Q ss_pred CEEEEEE
Q 004217 204 ELLAVAS 210 (767)
Q Consensus 204 ~~LAsgS 210 (767)
++|..-+
T Consensus 501 ryLYfLs 507 (668)
T COG4946 501 RYLYFLS 507 (668)
T ss_pred cEEEEEe
Confidence 9877655
No 257
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.33 E-value=1.1e-05 Score=91.31 Aligned_cols=148 Identities=16% Similarity=0.282 Sum_probs=106.4
Q ss_pred CCCeEEEEeCCC--CCCC-CCCCCeEEEEECCCCCeEEEEe--CCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCc
Q 004217 89 EAESLHHLRPKY--CPLS-PPPRSTIAAAFSPDGKTLASTH--GDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPT 163 (767)
Q Consensus 89 ~DgsIrlWd~~t--~~L~-gH~~sVtsVaFSpDG~~LASgs--~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~ 163 (767)
.+.++.+.+.+. +.+. ...++|+++.|+++++.++++. .--.|.|+|++ ++.+..|. .++=.++-|+| .++
T Consensus 249 GEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~--egpRN~~~fnp-~g~ 324 (566)
T KOG2315|consen 249 GEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP--EGPRNTAFFNP-HGN 324 (566)
T ss_pred ccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC--CCCccceEECC-CCC
Confidence 355677777762 2222 3478999999999999887654 35689999976 56666653 45557789999 888
Q ss_pred EEEEEeC---CCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEE-------CCcEEEEEcCCCccccCCeEEec
Q 004217 164 IIASGSL---DHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS-------GHKLYIWRYNMREETSSPRIVLR 233 (767)
Q Consensus 164 lLaSgS~---DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgS-------dd~V~VWDl~t~~~~~~~~~l~~ 233 (767)
+++.++- -|.|-+||+.+.+++..+..... +-+.|+|||++|+++. |++++||++.....-. .
T Consensus 325 ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~t-t~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~~------~ 397 (566)
T KOG2315|consen 325 IILLAGFGNLPGDMEVWDVPNRKLIAKFKAANT-TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLHE------K 397 (566)
T ss_pred EEEEeecCCCCCceEEEeccchhhccccccCCc-eEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceeeh------h
Confidence 8887665 48899999999888887764443 4478999999999886 4669999987654211 1
Q ss_pred C-CCCeEEEEEccCC
Q 004217 234 T-RRSLRAVHFHPHA 247 (767)
Q Consensus 234 h-~~~VtsVaFSPDG 247 (767)
+ ......+.|-|-.
T Consensus 398 ~f~sEL~qv~W~P~~ 412 (566)
T KOG2315|consen 398 MFKSELLQVEWRPFN 412 (566)
T ss_pred hhhHhHhheeeeecC
Confidence 1 1256777877643
No 258
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.32 E-value=2.5e-06 Score=91.15 Aligned_cols=173 Identities=13% Similarity=0.105 Sum_probs=123.8
Q ss_pred EEEEEcCCCEEEEEeCCCeEEEEeCCCCCC---CCCCCCeEEEEECCCCCeEEEE-eCCCeEEEEECCCCeEEEEEccCC
Q 004217 74 FEAGRDARRGLASWVEAESLHHLRPKYCPL---SPPPRSTIAAAFSPDGKTLAST-HGDHTVKIIDCQTGSCLKVLHGHR 149 (767)
Q Consensus 74 ~vA~sd~g~~LaSgs~DgsIrlWd~~t~~L---~gH~~sVtsVaFSpDG~~LASg-s~DGtVrVWDl~tg~~l~~L~gH~ 149 (767)
+..++.+|+++++.+.- .+-+-|.++-++ -.--+.|.-+.|..|..+++++ ..|+.|.+|++...+--..+....
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~ 91 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQ 91 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCC
Confidence 34567899999998766 566666655321 1123567788999988776655 668899999999888888888888
Q ss_pred CCcEEEEEccCCC-cEEEEEeCCCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEECCc----EEEEEcCCCcc
Q 004217 150 RTPWVVRFHPLNP-TIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHK----LYIWRYNMREE 224 (767)
Q Consensus 150 ~~V~sLafsP~dg-~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSdd~----V~VWDl~t~~~ 224 (767)
+.+..++|+| ++ .+|.+..-|-.|.+|.+.+.+....--.+..+..++|+|||++.+..+... +.|..-..-..
T Consensus 92 agls~~~WSP-dgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~l 170 (447)
T KOG4497|consen 92 AGLSSISWSP-DGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWIL 170 (447)
T ss_pred CcceeeeECC-CcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHH
Confidence 8999999999 55 667777789999999999887776544445568899999999999888422 33321111111
Q ss_pred ccCCeEEecCCCCeEEEEEccCCCeEE
Q 004217 225 TSSPRIVLRTRRSLRAVHFHPHAAPLL 251 (767)
Q Consensus 225 ~~~~~~l~~h~~~VtsVaFSPDG~~Ll 251 (767)
.. .+.-..-..+.+.|+|||..|+
T Consensus 171 l~---~f~~dT~DltgieWsPdg~~la 194 (447)
T KOG4497|consen 171 LK---EFKLDTIDLTGIEWSPDGNWLA 194 (447)
T ss_pred HH---hcCCCcccccCceECCCCcEEE
Confidence 11 1222244568899999999876
No 259
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.31 E-value=5.1e-05 Score=84.48 Aligned_cols=168 Identities=13% Similarity=0.062 Sum_probs=128.2
Q ss_pred CCCEEEEEeCCCeEEEEeCCCC--CCCCCCCCeEEEEECCCCCeEEEEeCCC-eEEEEECCCCeEEEEEccCCCCcEEEE
Q 004217 80 ARRGLASWVEAESLHHLRPKYC--PLSPPPRSTIAAAFSPDGKTLASTHGDH-TVKIIDCQTGSCLKVLHGHRRTPWVVR 156 (767)
Q Consensus 80 ~g~~LaSgs~DgsIrlWd~~t~--~L~gH~~sVtsVaFSpDG~~LASgs~DG-tVrVWDl~tg~~l~~L~gH~~~V~sLa 156 (767)
+|..++..+ .|+..+.+...+ .-.+|.+.|.-..+.-+++-++.|..|| .+-|+|.++++ ++.+.+.-+.|.++.
T Consensus 331 ~Gd~ia~VS-RGkaFi~~~~~~~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e-~kr~e~~lg~I~av~ 408 (668)
T COG4946 331 NGDYIALVS-RGKAFIMRPWDGYSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE-VKRIEKDLGNIEAVK 408 (668)
T ss_pred CCcEEEEEe-cCcEEEECCCCCeeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCce-EEEeeCCccceEEEE
Confidence 455555554 344444443333 2347788899999999999999999999 89999998887 455666778899999
Q ss_pred EccCCCcEEEEEeCCCeEEEEECCCCeEEEee-cCCCCeEEEEEcCCCCEEEEEECC-----cEEEEEcCCCccccCCeE
Q 004217 157 FHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASGH-----KLYIWRYNMREETSSPRI 230 (767)
Q Consensus 157 fsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l-~h~~~VtsVafSPdG~~LAsgSdd-----~V~VWDl~t~~~~~~~~~ 230 (767)
.++ +++.++.+.....+.+.|+.+++....- ...+-|+..+|||+++++|-+--. .|+++|+..++...
T Consensus 409 vs~-dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~---- 483 (668)
T COG4946 409 VSP-DGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYD---- 483 (668)
T ss_pred EcC-CCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEE----
Confidence 999 9999999988899999999999876553 356779999999999999988632 29999999887533
Q ss_pred EecCCCCeEEEEEccCCCeEEEEE
Q 004217 231 VLRTRRSLRAVHFHPHAAPLLLTA 254 (767)
Q Consensus 231 l~~h~~~VtsVaFSPDG~~LlaSg 254 (767)
.......-.+-+|.||+++|..-+
T Consensus 484 vTT~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 484 VTTPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred ecCCcccccCcccCCCCcEEEEEe
Confidence 223334456789999999876533
No 260
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.27 E-value=8.8e-07 Score=103.52 Aligned_cols=180 Identities=14% Similarity=0.133 Sum_probs=132.5
Q ss_pred ceEEEEEEcCCCEEEEEeCCCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCeEEEEeC-CC-eEEEEECCC-CeEEE
Q 004217 71 SQIFEAGRDARRGLASWVEAESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTLASTHG-DH-TVKIIDCQT-GSCLK 143 (767)
Q Consensus 71 s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~----L~gH~~sVtsVaFSpDG~~LASgs~-DG-tVrVWDl~t-g~~l~ 143 (767)
...+.+++-+...|+.|+-.|.|+++++.++. ..+|...|+-+.-+.||..+++.+. .. ...+|++.+ +...+
T Consensus 1103 ~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~H 1182 (1516)
T KOG1832|consen 1103 LFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRH 1182 (1516)
T ss_pred ceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccccccCccc
Confidence 47788899999999999999999999999884 6689999999999999987765543 33 578999864 55556
Q ss_pred EEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEee-----cCCCCeEEEEEcCCCCEEEEEECCcEEEEE
Q 004217 144 VLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-----DFYRPIASIAFHASGELLAVASGHKLYIWR 218 (767)
Q Consensus 144 ~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l-----~h~~~VtsVafSPdG~~LAsgSdd~V~VWD 218 (767)
.|.+ -.++.|+. ....-+.|.....+.+||+.++..+.++ .....-+++.|+|+.++++--+ .+||
T Consensus 1183 sf~e----d~~vkFsn-~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIlndG----vLWD 1253 (1516)
T KOG1832|consen 1183 SFDE----DKAVKFSN-SLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILNDG----VLWD 1253 (1516)
T ss_pred cccc----cceeehhh-hHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEeeCc----eeee
Confidence 6653 35688887 4444444555567899999998876652 2233447788999998876333 5899
Q ss_pred cCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCCcCCCC
Q 004217 219 YNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSE 263 (767)
Q Consensus 219 l~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgsvwdl~s~~ 263 (767)
++..+.+. .+...... -.=.|+|.|..++.-+++||+++..
T Consensus 1254 vR~~~aIh---~FD~ft~~-~~G~FHP~g~eVIINSEIwD~RTF~ 1294 (1516)
T KOG1832|consen 1254 VRIPEAIH---RFDQFTDY-GGGGFHPSGNEVIINSEIWDMRTFK 1294 (1516)
T ss_pred eccHHHHh---hhhhheec-ccccccCCCceEEeechhhhhHHHH
Confidence 99886655 22222211 1235999999999999999999643
No 261
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.25 E-value=6.3e-06 Score=91.84 Aligned_cols=154 Identities=16% Similarity=0.182 Sum_probs=120.5
Q ss_pred CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEE-ccCCCCcEEEEEccC-CCcEEEEEeCCCeEEEEEC
Q 004217 102 PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL-HGHRRTPWVVRFHPL-NPTIIASGSLDHEVRLWNA 179 (767)
Q Consensus 102 ~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L-~gH~~~V~sLafsP~-dg~lLaSgS~DGtVrIWDl 179 (767)
+|.+|.+.|..|.|+..|..|++|+.|..|.+||...++....| .||...|..-.|-|. +...+++++.||.|++=.+
T Consensus 137 kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i 216 (559)
T KOG1334|consen 137 KLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEI 216 (559)
T ss_pred cccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeee
Confidence 57899999999999999999999999999999999988876665 689999988888874 3457999999999999876
Q ss_pred CC-CeEEEe---ecCCCCeEEEEEcCCCC-EEEEEECCc-EEEEEcCCCccccCCeEEecCCC---CeEEEEEccCCCeE
Q 004217 180 ST-AECIGS---RDFYRPIASIAFHASGE-LLAVASGHK-LYIWRYNMREETSSPRIVLRTRR---SLRAVHFHPHAAPL 250 (767)
Q Consensus 180 ~t-g~~i~~---l~h~~~VtsVafSPdG~-~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~---~VtsVaFSPDG~~L 250 (767)
.. +.+..+ ..|.++|..++.-|+.. -|.+++.+. ++-+|++.............+.. ..+.++.+|-..+.
T Consensus 217 ~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~ 296 (559)
T KOG1334|consen 217 LETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNE 296 (559)
T ss_pred ccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccc
Confidence 54 333322 45999999999999875 466666666 88899988765443333333333 57899999988866
Q ss_pred EEEEe
Q 004217 251 LLTAE 255 (767)
Q Consensus 251 laSgs 255 (767)
++.++
T Consensus 297 faVgG 301 (559)
T KOG1334|consen 297 FAVGG 301 (559)
T ss_pred cccCC
Confidence 66655
No 262
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.25 E-value=0.00078 Score=74.86 Aligned_cols=96 Identities=13% Similarity=0.095 Sum_probs=68.5
Q ss_pred CeEEEEeCCCCCCCCC---CCCeEEEEECCCCCeEEEEeC----------CCeEEEEECCCCeEEEEEccC-------CC
Q 004217 91 ESLHHLRPKYCPLSPP---PRSTIAAAFSPDGKTLASTHG----------DHTVKIIDCQTGSCLKVLHGH-------RR 150 (767)
Q Consensus 91 gsIrlWd~~t~~L~gH---~~sVtsVaFSpDG~~LASgs~----------DGtVrVWDl~tg~~l~~L~gH-------~~ 150 (767)
++|.+.|..+.++.+. ...-..+ +||||+.|+.+.. +..|.+||..+++.+..+.-- ..
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~ 105 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGT 105 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccC
Confidence 6777788776643211 0111224 9999999987765 789999999999999888632 12
Q ss_pred CcEEEEEccCCCcEEEEEe-C-CCeEEEEECCCCeEEEee
Q 004217 151 TPWVVRFHPLNPTIIASGS-L-DHEVRLWNASTAECIGSR 188 (767)
Q Consensus 151 ~V~sLafsP~dg~lLaSgS-~-DGtVrIWDl~tg~~i~~l 188 (767)
....++++| ++++++... . +..|-+.|+.+++.+..+
T Consensus 106 ~~~~~~ls~-dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei 144 (352)
T TIGR02658 106 YPWMTSLTP-DNKTLLFYQFSPSPAVGVVDLEGKAFVRMM 144 (352)
T ss_pred ccceEEECC-CCCEEEEecCCCCCEEEEEECCCCcEEEEE
Confidence 234789999 888777554 4 789999999998876653
No 263
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.22 E-value=1.3e-05 Score=89.34 Aligned_cols=184 Identities=14% Similarity=0.077 Sum_probs=139.0
Q ss_pred eEEEEEEcCCCEEEEEeCCCeEEEEeCCCCC-----CCCCCCCeEEEEECC--CCCeEEEEeCCCeEEEEECCC-CeE--
Q 004217 72 QIFEAGRDARRGLASWVEAESLHHLRPKYCP-----LSPPPRSTIAAAFSP--DGKTLASTHGDHTVKIIDCQT-GSC-- 141 (767)
Q Consensus 72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~-----L~gH~~sVtsVaFSp--DG~~LASgs~DGtVrVWDl~t-g~~-- 141 (767)
+-.+.+...|..|++++.|..|.+||..... ..+|...|.-..|-| +.+.|++++.||.|++=.+.. +.+
T Consensus 145 VntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~ 224 (559)
T KOG1334|consen 145 VNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVEN 224 (559)
T ss_pred cceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceec
Confidence 3345566789999999999999999988763 348999999999988 667899999999999977643 332
Q ss_pred EEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEee---c-CCC---CeEEEEEcCCCC-EEEEEECCc
Q 004217 142 LKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR---D-FYR---PIASIAFHASGE-LLAVASGHK 213 (767)
Q Consensus 142 l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l---~-h~~---~VtsVafSPdG~-~LAsgSdd~ 213 (767)
...+..|.+.|..++.-|.....|.|++.|+.+.-+|++.+.....+ . +.. ....++.+|... .+++++.+.
T Consensus 225 t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dq 304 (559)
T KOG1334|consen 225 TKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQ 304 (559)
T ss_pred ceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhh
Confidence 34566799999999999988889999999999999999976543332 1 222 457889999876 788888776
Q ss_pred -EEEEEcCCCcccc---------CCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217 214 -LYIWRYNMREETS---------SPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (767)
Q Consensus 214 -V~VWDl~t~~~~~---------~~~~l~~h~~~VtsVaFSPDG~~LlaSgs 255 (767)
+++||.+.-.... +........-.|++++|+.++.-|+++-.
T Consensus 305 f~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYn 356 (559)
T KOG1334|consen 305 FARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYN 356 (559)
T ss_pred hhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeec
Confidence 9999987543321 00111122456899999988877777654
No 264
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.20 E-value=7.1e-05 Score=78.55 Aligned_cols=175 Identities=9% Similarity=0.006 Sum_probs=121.3
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCC--CCCCCCCC--eEEEEECCCCCeEEEEeCCCeEEEEECCCC-eEE-E-EEccCCCC
Q 004217 79 DARRGLASWVEAESLHHLRPKYC--PLSPPPRS--TIAAAFSPDGKTLASTHGDHTVKIIDCQTG-SCL-K-VLHGHRRT 151 (767)
Q Consensus 79 d~g~~LaSgs~DgsIrlWd~~t~--~L~gH~~s--VtsVaFSpDG~~LASgs~DGtVrVWDl~tg-~~l-~-~L~gH~~~ 151 (767)
+..-.+...+.|.++++.+++.+ +..-|... +..+++++|++++++.+....|..|.+... +.+ + .....++.
T Consensus 126 d~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~ 205 (344)
T KOG4532|consen 126 DLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDH 205 (344)
T ss_pred ccccceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCC
Confidence 34555667788888888888765 34455554 889999999999999999999999998753 333 3 23334455
Q ss_pred cEEEEEccCCCcEEEEEeCCCeEEEEECCCCeE-EEe-----ecCCCCeEEEEEcCCCC--EEEEEE-CCcEEEEEcCCC
Q 004217 152 PWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC-IGS-----RDFYRPIASIAFHASGE--LLAVAS-GHKLYIWRYNMR 222 (767)
Q Consensus 152 V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~-i~~-----l~h~~~VtsVafSPdG~--~LAsgS-dd~V~VWDl~t~ 222 (767)
=.+..|+. ....+|++..||++.|||++.... ... -.|.+.+..+.|++.|. +|+..- -..+.+.|+++.
T Consensus 206 gF~~S~s~-~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~ 284 (344)
T KOG4532|consen 206 GFYNSFSE-NDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNY 284 (344)
T ss_pred ceeeeecc-CcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccC
Confidence 67889998 888999999999999999996432 222 13789999999999775 343333 344999999988
Q ss_pred ccccCC----eEEecCC-CCeEEEEEccCCCeEEEEE
Q 004217 223 EETSSP----RIVLRTR-RSLRAVHFHPHAAPLLLTA 254 (767)
Q Consensus 223 ~~~~~~----~~l~~h~-~~VtsVaFSPDG~~LlaSg 254 (767)
...+.. .....|. ..|..-.|+.++..+.+..
T Consensus 285 ~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~ 321 (344)
T KOG4532|consen 285 VNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKN 321 (344)
T ss_pred ceeeEEecCccccccccccccccccccCCCccccccc
Confidence 754311 1112232 3366666776666444433
No 265
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.16 E-value=5.8e-05 Score=81.43 Aligned_cols=147 Identities=12% Similarity=0.168 Sum_probs=105.7
Q ss_pred CCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCe---EEEEEccC-----CCCcEEEEEccCCCcEEEEEeCCCeEEE
Q 004217 105 PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS---CLKVLHGH-----RRTPWVVRFHPLNPTIIASGSLDHEVRL 176 (767)
Q Consensus 105 gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~---~l~~L~gH-----~~~V~sLafsP~dg~lLaSgS~DGtVrI 176 (767)
+|+--|+++.++.|+..++++ +|-.|.+|+++--. .+..++.+ +.-|++..|||...++|+-.+..|+|++
T Consensus 162 aHtyhiNSIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrL 240 (433)
T KOG1354|consen 162 AHTYHINSISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRL 240 (433)
T ss_pred cceeEeeeeeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEE
Confidence 578889999999999999886 46789999986422 23333433 3468899999988999999999999999
Q ss_pred EECCCCeEEE----eec-------------CCCCeEEEEEcCCCCEEEEEECCcEEEEEcCCCccccCCeEEecCC----
Q 004217 177 WNASTAECIG----SRD-------------FYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTR---- 235 (767)
Q Consensus 177 WDl~tg~~i~----~l~-------------h~~~VtsVafSPdG~~LAsgSdd~V~VWDl~t~~~~~~~~~l~~h~---- 235 (767)
-|++.....- .++ .-..|..+.|+.+|+|+++-..-.|++||++.... +.....-|.
T Consensus 241 cDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~--pv~t~~vh~~lr~ 318 (433)
T KOG1354|consen 241 CDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAK--PVETYPVHEYLRS 318 (433)
T ss_pred eechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCC--cceEEeehHhHHH
Confidence 9999533211 111 12467889999999999988888899999965443 122333331
Q ss_pred --------CCe---EEEEEccCCCeEEEEE
Q 004217 236 --------RSL---RAVHFHPHAAPLLLTA 254 (767)
Q Consensus 236 --------~~V---tsVaFSPDG~~LlaSg 254 (767)
+.| ..++|+.++.++++++
T Consensus 319 kLc~lYEnD~IfdKFec~~sg~~~~v~TGs 348 (433)
T KOG1354|consen 319 KLCSLYENDAIFDKFECSWSGNDSYVMTGS 348 (433)
T ss_pred HHHHHhhccchhheeEEEEcCCcceEeccc
Confidence 222 4688999988655544
No 266
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.12 E-value=7.1e-06 Score=60.87 Aligned_cols=39 Identities=31% Similarity=0.775 Sum_probs=36.8
Q ss_pred CeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEE
Q 004217 139 GSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWN 178 (767)
Q Consensus 139 g~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWD 178 (767)
++++.++++|...|++++|+| ++++|++++.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~-~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSP-DGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEET-TSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEec-ccccceeeCCCCEEEEEC
Confidence 467899999999999999999 899999999999999998
No 267
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.08 E-value=0.00018 Score=90.51 Aligned_cols=151 Identities=15% Similarity=0.133 Sum_probs=104.9
Q ss_pred EEEEEEc-CCCEEEEEeCCCeEEEEeCCCCCC---C---------CC------CCCeEEEEECCCCCeE-EEEeCCCeEE
Q 004217 73 IFEAGRD-ARRGLASWVEAESLHHLRPKYCPL---S---------PP------PRSTIAAAFSPDGKTL-ASTHGDHTVK 132 (767)
Q Consensus 73 ~~vA~sd-~g~~LaSgs~DgsIrlWd~~t~~L---~---------gH------~~sVtsVaFSpDG~~L-ASgs~DGtVr 132 (767)
.-+++.. ++...++-..++.|++||...+.. . ++ -.....|+|+||++.| ++-..++.|+
T Consensus 686 ~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Ir 765 (1057)
T PLN02919 686 WDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIR 765 (1057)
T ss_pred eEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEE
Confidence 3455555 556666777888999999866421 1 11 1235679999999855 4556678999
Q ss_pred EEECCCCeEEEEEcc---------------------CCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecC-
Q 004217 133 IIDCQTGSCLKVLHG---------------------HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDF- 190 (767)
Q Consensus 133 VWDl~tg~~l~~L~g---------------------H~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h- 190 (767)
+||++++.......+ .-.....++|++ +++++++-..++.|++||..++......+.
T Consensus 766 v~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~-dG~LYVADs~N~rIrviD~~tg~v~tiaG~G 844 (1057)
T PLN02919 766 ALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAK-DGQIYVADSYNHKIKKLDPATKRVTTLAGTG 844 (1057)
T ss_pred EEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeC-CCcEEEEECCCCEEEEEECCCCeEEEEeccC
Confidence 999987653211100 011346889999 888999999999999999998876644321
Q ss_pred -------------CCCeEEEEEcCCCCEEEEEEC-CcEEEEEcCCCcc
Q 004217 191 -------------YRPIASIAFHASGELLAVASG-HKLYIWRYNMREE 224 (767)
Q Consensus 191 -------------~~~VtsVafSPdG~~LAsgSd-d~V~VWDl~t~~~ 224 (767)
-.....++++++|+++++-+. +.|++||+++++.
T Consensus 845 ~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 845 KAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred CcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 124678999999997666654 4499999988764
No 268
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.05 E-value=7.6e-06 Score=91.81 Aligned_cols=153 Identities=16% Similarity=0.113 Sum_probs=113.3
Q ss_pred eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC-----------CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCe
Q 004217 72 QIFEAGRDARRGLASWVEAESLHHLRPKYC-----------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS 140 (767)
Q Consensus 72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~-----------~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~ 140 (767)
...++.-++...+++.+.|++|++|.++.. ++..|+.+|.++.|-.|-++++++ |+-|.+||.--++
T Consensus 738 iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr 815 (1034)
T KOG4190|consen 738 IRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGR 815 (1034)
T ss_pred hHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcceeecccccc
Confidence 334445577788899999999999998742 467899999999999998888865 7889999987777
Q ss_pred EEEEEcc--CCCCcEEEEEccC-CCcEEEE-EeCCCeEEEEECCCCeEEEeec------CCCCeEEEEEcCCCCEEEEEE
Q 004217 141 CLKVLHG--HRRTPWVVRFHPL-NPTIIAS-GSLDHEVRLWNASTAECIGSRD------FYRPIASIAFHASGELLAVAS 210 (767)
Q Consensus 141 ~l~~L~g--H~~~V~sLafsP~-dg~lLaS-gS~DGtVrIWDl~tg~~i~~l~------h~~~VtsVafSPdG~~LAsgS 210 (767)
.+..... ..+.+..+..-+. +..+++. ++...+|+++|.+..+...+++ .+.-+.+++..+.|++++++-
T Consensus 816 ~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~L 895 (1034)
T KOG4190|consen 816 LLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAAL 895 (1034)
T ss_pred hhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHh
Confidence 6653321 1123333443342 3344444 4789999999999987766643 335688999999999999886
Q ss_pred CC-cEEEEEcCCCcccc
Q 004217 211 GH-KLYIWRYNMREETS 226 (767)
Q Consensus 211 dd-~V~VWDl~t~~~~~ 226 (767)
.+ .|.+.|.++++.+.
T Consensus 896 SnGci~~LDaR~G~vIN 912 (1034)
T KOG4190|consen 896 SNGCIAILDARNGKVIN 912 (1034)
T ss_pred cCCcEEEEecCCCceec
Confidence 54 49999999998655
No 269
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.04 E-value=0.00038 Score=87.58 Aligned_cols=178 Identities=13% Similarity=0.098 Sum_probs=111.7
Q ss_pred EEEEEEcCCCEEEE-EeCCCeEEEEeCCCCC---CCC--C---------------CCCeEEEEECC-CCCeEEEEeCCCe
Q 004217 73 IFEAGRDARRGLAS-WVEAESLHHLRPKYCP---LSP--P---------------PRSTIAAAFSP-DGKTLASTHGDHT 130 (767)
Q Consensus 73 ~~vA~sd~g~~LaS-gs~DgsIrlWd~~t~~---L~g--H---------------~~sVtsVaFSp-DG~~LASgs~DGt 130 (767)
.-+++..++..|+. -...+.|+++|..++. +.+ . -..-..++|+| ++.++++...++.
T Consensus 627 ~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~ 706 (1057)
T PLN02919 627 QGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQ 706 (1057)
T ss_pred cEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCe
Confidence 34455545554443 4456778888876542 111 0 11346899999 5666677778899
Q ss_pred EEEEECCCCeEEEEEccC---------------CCCcEEEEEccCCCc-EEEEEeCCCeEEEEECCCCeEEEee------
Q 004217 131 VKIIDCQTGSCLKVLHGH---------------RRTPWVVRFHPLNPT-IIASGSLDHEVRLWNASTAECIGSR------ 188 (767)
Q Consensus 131 VrVWDl~tg~~l~~L~gH---------------~~~V~sLafsP~dg~-lLaSgS~DGtVrIWDl~tg~~i~~l------ 188 (767)
|++||..++... .+.+. -.....|+|+| +++ ++++-+.++.|++||+.++......
T Consensus 707 I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavsp-dG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~ 784 (1057)
T PLN02919 707 IWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSP-DLKELYIADSESSSIRALDLKTGGSRLLAGGDPTF 784 (1057)
T ss_pred EEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeC-CCCEEEEEECCCCeEEEEECCCCcEEEEEeccccc
Confidence 999999877543 22211 12456799999 555 7777778899999999876532211
Q ss_pred -------c-C--------CCCeEEEEEcCCCCEEEEEEC-CcEEEEEcCCCccccCCe----------EEecCCCCeEEE
Q 004217 189 -------D-F--------YRPIASIAFHASGELLAVASG-HKLYIWRYNMREETSSPR----------IVLRTRRSLRAV 241 (767)
Q Consensus 189 -------~-h--------~~~VtsVafSPdG~~LAsgSd-d~V~VWDl~t~~~~~~~~----------~l~~h~~~VtsV 241 (767)
+ . -.....++|+++|+++++-+. ++|++||..++....... .....-.....|
T Consensus 785 ~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GI 864 (1057)
T PLN02919 785 SDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGL 864 (1057)
T ss_pred CcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEE
Confidence 0 0 012458899999986666654 459999998765422000 001112356789
Q ss_pred EEccCCCeEEE
Q 004217 242 HFHPHAAPLLL 252 (767)
Q Consensus 242 aFSPDG~~Lla 252 (767)
+++++|+.+++
T Consensus 865 avd~dG~lyVa 875 (1057)
T PLN02919 865 ALGENGRLFVA 875 (1057)
T ss_pred EEeCCCCEEEE
Confidence 99999985444
No 270
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.02 E-value=3.5e-05 Score=84.46 Aligned_cols=149 Identities=18% Similarity=0.248 Sum_probs=98.7
Q ss_pred EEEEcCCCEEEEEeCCCeEEEEeCCCCCC-------CCCCCCeEEEEECCCCCeE---EEEeCCCeEEEEECCCCeEEEE
Q 004217 75 EAGRDARRGLASWVEAESLHHLRPKYCPL-------SPPPRSTIAAAFSPDGKTL---ASTHGDHTVKIIDCQTGSCLKV 144 (767)
Q Consensus 75 vA~sd~g~~LaSgs~DgsIrlWd~~t~~L-------~gH~~sVtsVaFSpDG~~L---ASgs~DGtVrVWDl~tg~~l~~ 144 (767)
...++.++.++....++...+++.....- ..-...-+++.|-.+.... -.+++...+.+|....+.+ ..
T Consensus 68 ~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~-~~ 146 (390)
T KOG3914|consen 68 VLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRC-EP 146 (390)
T ss_pred cccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCc-ch
Confidence 34455666666666666655555433210 0111222333443333333 3344556666776665543 34
Q ss_pred EccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEe--ecCCCCeEEEEEcCCCCEEEEEEC-CcEEEEEcCC
Q 004217 145 LHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS--RDFYRPIASIAFHASGELLAVASG-HKLYIWRYNM 221 (767)
Q Consensus 145 L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~--l~h~~~VtsVafSPdG~~LAsgSd-d~V~VWDl~t 221 (767)
+-||-.-++.++|+| |+++++++..|..||+-....--.+.. ++|..-|..++.-++. .|+++++ ++|++||+++
T Consensus 147 ~lGhvSml~dVavS~-D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~-~LlS~sGD~tlr~Wd~~s 224 (390)
T KOG3914|consen 147 ILGHVSMLLDVAVSP-DDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY-LLLSGSGDKTLRLWDITS 224 (390)
T ss_pred hhhhhhhhheeeecC-CCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc-eeeecCCCCcEEEEeccc
Confidence 568999999999999 889999999999999988776655555 5799999999987664 4666664 5599999999
Q ss_pred Ccccc
Q 004217 222 REETS 226 (767)
Q Consensus 222 ~~~~~ 226 (767)
++.+.
T Consensus 225 gk~L~ 229 (390)
T KOG3914|consen 225 GKLLD 229 (390)
T ss_pred CCccc
Confidence 98754
No 271
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=97.96 E-value=0.0014 Score=72.95 Aligned_cols=174 Identities=9% Similarity=0.078 Sum_probs=110.6
Q ss_pred EEcCCCEEEEEeC----------CCeEEEEeCCCCCCC------CC-----CCCeEEEEECCCCCeEEEEe-C-CCeEEE
Q 004217 77 GRDARRGLASWVE----------AESLHHLRPKYCPLS------PP-----PRSTIAAAFSPDGKTLASTH-G-DHTVKI 133 (767)
Q Consensus 77 ~sd~g~~LaSgs~----------DgsIrlWd~~t~~L~------gH-----~~sVtsVaFSpDG~~LASgs-~-DGtVrV 133 (767)
.+.+++.|+.+.. +..|.+||..+.+.. .. ...-..++++|||++|+... . +..|-|
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V 132 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV 132 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence 5566776666554 788999999987422 11 12344899999999998776 3 689999
Q ss_pred EECCCCeEEEEEccCC-------------------------------CCcEEE--------------EEccCCCcEEEEE
Q 004217 134 IDCQTGSCLKVLHGHR-------------------------------RTPWVV--------------RFHPLNPTIIASG 168 (767)
Q Consensus 134 WDl~tg~~l~~L~gH~-------------------------------~~V~sL--------------afsP~dg~lLaSg 168 (767)
.|+.+++.+..+.--. ..+... .|.+.++.+++..
T Consensus 133 vD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs 212 (352)
T TIGR02658 133 VDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPT 212 (352)
T ss_pred EECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEe
Confidence 9998876655432100 001111 1223244555554
Q ss_pred eCCCeEEEEECCCC-----eEEEeec--------CCCCeEEEEEcCCCCEEEEEE-----------CCcEEEEEcCCCcc
Q 004217 169 SLDHEVRLWNASTA-----ECIGSRD--------FYRPIASIAFHASGELLAVAS-----------GHKLYIWRYNMREE 224 (767)
Q Consensus 169 S~DGtVrIWDl~tg-----~~i~~l~--------h~~~VtsVafSPdG~~LAsgS-----------dd~V~VWDl~t~~~ 224 (767)
.. |+|.+.|+... +.+..+. ....+.-++++++|+.+++.. .+.|.++|..+.+.
T Consensus 213 ~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kv 291 (352)
T TIGR02658 213 YT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKR 291 (352)
T ss_pred cC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeE
Confidence 44 99999996443 2222221 122334599999999877743 13499999999887
Q ss_pred ccCCeEEecCCCCeEEEEEccCCC-eEEEEEe
Q 004217 225 TSSPRIVLRTRRSLRAVHFHPHAA-PLLLTAE 255 (767)
Q Consensus 225 ~~~~~~l~~h~~~VtsVaFSPDG~-~LlaSgs 255 (767)
+. ...-...+..++|+||++ +|+++..
T Consensus 292 i~----~i~vG~~~~~iavS~Dgkp~lyvtn~ 319 (352)
T TIGR02658 292 LR----KIELGHEIDSINVSQDAKPLLYALST 319 (352)
T ss_pred EE----EEeCCCceeeEEECCCCCeEEEEeCC
Confidence 55 222355889999999999 6665553
No 272
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=97.95 E-value=2e-05 Score=85.01 Aligned_cols=159 Identities=9% Similarity=0.103 Sum_probs=111.7
Q ss_pred EEEeCCCeEEEEeCCCC--CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCC-----eEEEEEccCCCCcEEEEE
Q 004217 85 ASWVEAESLHHLRPKYC--PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTG-----SCLKVLHGHRRTPWVVRF 157 (767)
Q Consensus 85 aSgs~DgsIrlWd~~t~--~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg-----~~l~~L~gH~~~V~sLaf 157 (767)
++.+-+..+-+-+++++ +.-..++.|.++.|...+.++..|..+|.|.++|++.+ .+...|. |...|+++..
T Consensus 228 fs~G~sqqv~L~nvetg~~qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtslq~ 306 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSLQI 306 (425)
T ss_pred ecccccceeEEEEeecccccccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhhhh
Confidence 45556777888888876 22236778999999998999999999999999999864 3445554 8888998876
Q ss_pred ccCCCcEEEEEeCCCeEEEEECCCCeE---EEeec-CCCCeEE--EEEcCCCCEEEEEECCc-EEEEEcCCCccccCC-e
Q 004217 158 HPLNPTIIASGSLDHEVRLWNASTAEC---IGSRD-FYRPIAS--IAFHASGELLAVASGHK-LYIWRYNMREETSSP-R 229 (767)
Q Consensus 158 sP~dg~lLaSgS~DGtVrIWDl~tg~~---i~~l~-h~~~Vts--VafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~-~ 229 (767)
-..++.+|++.+.+|+|++||++.-++ +..++ |-..-.. +-.++....++++++|. .+||.++.+...... .
T Consensus 307 Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 307 LQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPF 386 (425)
T ss_pred hccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCC
Confidence 555678899999999999999998777 44433 3322222 22345556777788777 999999988764411 1
Q ss_pred EEecCCCCeEEEEEc
Q 004217 230 IVLRTRRSLRAVHFH 244 (767)
Q Consensus 230 ~l~~h~~~VtsVaFS 244 (767)
........+.+++|.
T Consensus 387 ~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 387 PYSASEVDIPSVAFD 401 (425)
T ss_pred CCccccccccceehh
Confidence 111123345566654
No 273
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.93 E-value=6.1e-06 Score=92.57 Aligned_cols=150 Identities=16% Similarity=0.185 Sum_probs=108.3
Q ss_pred CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCC-------CeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeE
Q 004217 102 PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT-------GSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEV 174 (767)
Q Consensus 102 ~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~t-------g~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtV 174 (767)
.+.||...|..++--.+.+-+++++.|++||+|.++. ..|..+++.|+.+|..+.|-. +.+.++++ |+.|
T Consensus 730 nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~-~lr~i~Sc--D~gi 806 (1034)
T KOG4190|consen 730 NFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLA-DLRSIASC--DGGI 806 (1034)
T ss_pred cccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeee-ccceeeec--cCcc
Confidence 4679999999988777888899999999999999863 347788899999999999988 67777764 8999
Q ss_pred EEEECCCCeEEEeec---CCCCeEEEEEcCC--CCEEEEE-EC-CcEEEEEcCCCccccCCeEE--ecCCCCeEEEEEcc
Q 004217 175 RLWNASTAECIGSRD---FYRPIASIAFHAS--GELLAVA-SG-HKLYIWRYNMREETSSPRIV--LRTRRSLRAVHFHP 245 (767)
Q Consensus 175 rIWDl~tg~~i~~l~---h~~~VtsVafSPd--G~~LAsg-Sd-d~V~VWDl~t~~~~~~~~~l--~~h~~~VtsVaFSP 245 (767)
++||---++.+.... ..+.+..+..-++ ..++..| +. .+|+++|.+..+-....+.- .+....+++++..+
T Consensus 807 HlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~ 886 (1034)
T KOG4190|consen 807 HLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVAD 886 (1034)
T ss_pred eeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEecc
Confidence 999987777665321 2233333333343 3344444 33 44999999987654322222 23456789999999
Q ss_pred CCCeEEEEE
Q 004217 246 HAAPLLLTA 254 (767)
Q Consensus 246 DG~~LlaSg 254 (767)
.|++++++-
T Consensus 887 ~GN~lAa~L 895 (1034)
T KOG4190|consen 887 KGNKLAAAL 895 (1034)
T ss_pred CcchhhHHh
Confidence 999887643
No 274
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.92 E-value=1.1e-05 Score=94.74 Aligned_cols=237 Identities=15% Similarity=0.141 Sum_probs=152.7
Q ss_pred CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeC-CC-eEEEEEC
Q 004217 102 PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSL-DH-EVRLWNA 179 (767)
Q Consensus 102 ~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~-DG-tVrIWDl 179 (767)
.+..|+...+|++|+-+.++|+.|+..|.|+++++.+|.......+|...|+.+.=+- ++..+++.+. .. -..+|++
T Consensus 1096 ~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~-dgs~~Ltsss~S~PlsaLW~~ 1174 (1516)
T KOG1832|consen 1096 SFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSV-DGSTQLTSSSSSSPLSALWDA 1174 (1516)
T ss_pred hhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccC-CcceeeeeccccCchHHHhcc
Confidence 4667889999999999999999999999999999999999999999999999998887 6665555443 33 5789998
Q ss_pred CC-CeEEEeecCCCCeEEEEEcCCCCEEEEEE-CCcEEEEEcCCCccccCC-eEEecCCCCeEEEEEccCCCeEEEEEee
Q 004217 180 ST-AECIGSRDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSP-RIVLRTRRSLRAVHFHPHAAPLLLTAEV 256 (767)
Q Consensus 180 ~t-g~~i~~l~h~~~VtsVafSPdG~~LAsgS-dd~V~VWDl~t~~~~~~~-~~l~~h~~~VtsVaFSPDG~~LlaSgsv 256 (767)
.+ +...+.+. .-.++.|+..-++-+.|. .+...+||+.+....... .-..+....-+...|+|+...++--|-.
T Consensus 1175 ~s~~~~~Hsf~---ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIlndGvL 1251 (1516)
T KOG1832|consen 1175 SSTGGPRHSFD---EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILNDGVL 1251 (1516)
T ss_pred ccccCcccccc---ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEeeCcee
Confidence 75 44444443 334677887665555555 456999999998875521 1112223344789999999988888889
Q ss_pred CCcCCCCcceeEeecC----CCccCCCC-eEE----EecCCCCCCCceeeccCCCCCCce---eeEEecCCCEEEEeecC
Q 004217 257 NDLDSSESSLTLATSP----GYWRYPPP-VIC----MAGAHSSSHPGLAEEVPLITPPFL---RPSFVRDDERISLQHTE 324 (767)
Q Consensus 257 wdl~s~~~~~~l~t~s----G~~~~p~~-~v~----l~~~~Ssd~~~L~sg~~~~slpil---~psFSpDg~rIva~~~~ 324 (767)
||++..+....+..++ |.++ |.. -+. +|+..+ -.-..+.|-+ .+.|..-|..+|+.-+.
T Consensus 1252 WDvR~~~aIh~FD~ft~~~~G~FH-P~g~eVIINSEIwD~RT--------F~lLh~VP~Ldqc~VtFNstG~VmYa~~~~ 1322 (1516)
T KOG1832|consen 1252 WDVRIPEAIHRFDQFTDYGGGGFH-PSGNEVIINSEIWDMRT--------FKLLHSVPSLDQCAVTFNSTGDVMYAMLNI 1322 (1516)
T ss_pred eeeccHHHHhhhhhheeccccccc-CCCceEEeechhhhhHH--------HHHHhcCccccceEEEeccCccchhhhhhh
Confidence 9999654332222111 1111 211 111 122111 0111223433 56777777777775555
Q ss_pred CCCCCcccccccccCCceeeeeccCCC
Q 004217 325 HDSGATRTQQSLRSSSSVRLLTYSTPS 351 (767)
Q Consensus 325 ~d~Gs~~~~~~~~ss~~~~l~~~~~~~ 351 (767)
.|.-+-.-..+....-...|..+++-+
T Consensus 1323 ~d~~sdvh~~r~k~p~fSSFRTf~a~d 1349 (1516)
T KOG1832|consen 1323 EDVMSDVHTRRVKHPLFSSFRTFDAID 1349 (1516)
T ss_pred hhhhhhhcccccccchhhhhccccccc
Confidence 554444455555555555555555543
No 275
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.87 E-value=0.00033 Score=74.87 Aligned_cols=191 Identities=13% Similarity=0.140 Sum_probs=126.4
Q ss_pred eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC---------CCCCCC------------CCeEEEEECCCCC--eEEEEeCC
Q 004217 72 QIFEAGRDARRGLASWVEAESLHHLRPKYC---------PLSPPP------------RSTIAAAFSPDGK--TLASTHGD 128 (767)
Q Consensus 72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~---------~L~gH~------------~sVtsVaFSpDG~--~LASgs~D 128 (767)
...+-+...|.+|++|...|.|.++.-... ++++|. ..|..+.|-.++. .++..+.|
T Consensus 29 ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNd 108 (460)
T COG5170 29 ITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTND 108 (460)
T ss_pred eeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCC
Confidence 445556677899999998899998876532 245553 3588899887543 46667789
Q ss_pred CeEEEEECCCCe-------------------------------------EE-----EEE-ccCCCCcEEEEEccCCCcEE
Q 004217 129 HTVKIIDCQTGS-------------------------------------CL-----KVL-HGHRRTPWVVRFHPLNPTII 165 (767)
Q Consensus 129 GtVrVWDl~tg~-------------------------------------~l-----~~L-~gH~~~V~sLafsP~dg~lL 165 (767)
.+|++|.+.... .+ +.+ ..|.--|.++.|+. +...+
T Consensus 109 ktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns-D~et~ 187 (460)
T COG5170 109 KTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS-DKETL 187 (460)
T ss_pred ceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecC-chhee
Confidence 999999873220 00 111 24667788899988 77777
Q ss_pred EEEeCCCeEEEEECCCCeE-EE---eecCC-----CCeEEEEEcCCCC--EEEEEECCcEEEEEcCCCccccCC------
Q 004217 166 ASGSLDHEVRLWNASTAEC-IG---SRDFY-----RPIASIAFHASGE--LLAVASGHKLYIWRYNMREETSSP------ 228 (767)
Q Consensus 166 aSgS~DGtVrIWDl~tg~~-i~---~l~h~-----~~VtsVafSPdG~--~LAsgSdd~V~VWDl~t~~~~~~~------ 228 (767)
+++ .|=.|.+|++..... .. ...|. .-|++..|+|... +..+.+.+.|++-|++........
T Consensus 188 lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~ 266 (460)
T COG5170 188 LSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFEL 266 (460)
T ss_pred eec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhh
Confidence 775 578899999875322 11 12232 3578899999654 455555677999999954321100
Q ss_pred -------eEEecCCCCeEEEEEccCCCeEEE----EEeeCCcCCCCc
Q 004217 229 -------RIVLRTRRSLRAVHFHPHAAPLLL----TAEVNDLDSSES 264 (767)
Q Consensus 229 -------~~l~~h~~~VtsVaFSPDG~~Lla----Sgsvwdl~s~~~ 264 (767)
..+.+-...|..+.|+++|+++++ +-.+||+.....
T Consensus 267 ~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~ 313 (460)
T COG5170 267 TIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKN 313 (460)
T ss_pred ccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccC
Confidence 011122457889999999998876 455999885443
No 276
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=97.87 E-value=0.00052 Score=78.11 Aligned_cols=136 Identities=15% Similarity=0.207 Sum_probs=95.5
Q ss_pred EEEEECCCCCe-EEEEe--CC---------CeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEE--EeCCCeEEE
Q 004217 111 IAAAFSPDGKT-LASTH--GD---------HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIAS--GSLDHEVRL 176 (767)
Q Consensus 111 tsVaFSpDG~~-LASgs--~D---------GtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaS--gS~DGtVrI 176 (767)
..+.|++-|+- |+.++ -| .++++.+++...+...+. -.++|.++.|+| ++..|+. |-.-.++.|
T Consensus 221 vqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~-s~~EF~VvyGfMPAkvti 298 (566)
T KOG2315|consen 221 VQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSP-SGREFAVVYGFMPAKVTI 298 (566)
T ss_pred eEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-CCCCceEEEECC-CCCEEEEEEecccceEEE
Confidence 45788886653 33222 23 468888888555555554 468999999999 6654444 566788999
Q ss_pred EECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEEC----CcEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEE
Q 004217 177 WNASTAECIGSRDFYRPIASIAFHASGELLAVASG----HKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLL 252 (767)
Q Consensus 177 WDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSd----d~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~Lla 252 (767)
||++ +..+..+. .++-+++-|+|.|++|+.++- +.+-|||+.+.+.+. ... -..-+-+.|+|||+++++
T Consensus 299 fnlr-~~~v~df~-egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~---~~~--a~~tt~~eW~PdGe~flT 371 (566)
T KOG2315|consen 299 FNLR-GKPVFDFP-EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIA---KFK--AANTTVFEWSPDGEYFLT 371 (566)
T ss_pred EcCC-CCEeEeCC-CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhcc---ccc--cCCceEEEEcCCCcEEEE
Confidence 9986 44555554 455677899999999988883 349999999876644 222 234456899999999887
Q ss_pred EEe
Q 004217 253 TAE 255 (767)
Q Consensus 253 Sgs 255 (767)
+.-
T Consensus 372 ATT 374 (566)
T KOG2315|consen 372 ATT 374 (566)
T ss_pred Eec
Confidence 653
No 277
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.83 E-value=0.0045 Score=67.30 Aligned_cols=216 Identities=15% Similarity=0.115 Sum_probs=139.3
Q ss_pred CCeEEEEECC-CCCeEEEEeCCC-eEEEEECCCCeEEEEEccCCCCcE--EEEEccCCCcEEEEEeC-----CCeEEEEE
Q 004217 108 RSTIAAAFSP-DGKTLASTHGDH-TVKIIDCQTGSCLKVLHGHRRTPW--VVRFHPLNPTIIASGSL-----DHEVRLWN 178 (767)
Q Consensus 108 ~sVtsVaFSp-DG~~LASgs~DG-tVrVWDl~tg~~l~~L~gH~~~V~--sLafsP~dg~lLaSgS~-----DGtVrIWD 178 (767)
.....++.+| ++..++.+-.-| ...+||..+++....+....+.-. .-.|++ ++++|++.-. .|.|-|||
T Consensus 5 ~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~-dG~~LytTEnd~~~g~G~IgVyd 83 (305)
T PF07433_consen 5 ARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSP-DGRLLYTTENDYETGRGVIGVYD 83 (305)
T ss_pred ccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcC-CCCEEEEeccccCCCcEEEEEEE
Confidence 3456788899 666667776655 478899999998877754333321 367999 8888888644 47899999
Q ss_pred CC-CCeEEEeec-CCCCeEEEEEcCCCCEEEEEECC-------------------cEEEEEcCCCccccCCeEE--ecCC
Q 004217 179 AS-TAECIGSRD-FYRPIASIAFHASGELLAVASGH-------------------KLYIWRYNMREETSSPRIV--LRTR 235 (767)
Q Consensus 179 l~-tg~~i~~l~-h~~~VtsVafSPdG~~LAsgSdd-------------------~V~VWDl~t~~~~~~~~~l--~~h~ 235 (767)
.. +.+.+.++. +.-....+.+.|||+.|+++..+ .|...|..+++.+. ...+ ..|.
T Consensus 84 ~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~-q~~Lp~~~~~ 162 (305)
T PF07433_consen 84 AARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLE-QVELPPDLHQ 162 (305)
T ss_pred CcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceee-eeecCccccc
Confidence 99 566666664 44455678899999888877522 15556667776554 2223 3477
Q ss_pred CCeEEEEEccCCCeEEEEEeeCCcCCCCcceeEeecCCCccCCCCeEEEecCCCCCCCceeeccCC--CCC--CceeeEE
Q 004217 236 RSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPL--ITP--PFLRPSF 311 (767)
Q Consensus 236 ~~VtsVaFSPDG~~LlaSgsvwdl~s~~~~~~l~t~sG~~~~p~~~v~l~~~~Ssd~~~L~sg~~~--~sl--pil~psF 311 (767)
-.|+.+++.++|. +..+.-|.-..++..- .+.+..... ...+...... ..+ -+-.++|
T Consensus 163 lSiRHLa~~~~G~--V~~a~Q~qg~~~~~~P--------------Lva~~~~g~--~~~~~~~p~~~~~~l~~Y~gSIa~ 224 (305)
T PF07433_consen 163 LSIRHLAVDGDGT--VAFAMQYQGDPGDAPP--------------LVALHRRGG--ALRLLPAPEEQWRRLNGYIGSIAA 224 (305)
T ss_pred cceeeEEecCCCc--EEEEEecCCCCCccCC--------------eEEEEcCCC--cceeccCChHHHHhhCCceEEEEE
Confidence 8899999999997 3334344444333322 233322111 1111111110 111 2227999
Q ss_pred ecCCCEEEEeecCCCCCCcccccccccCCceeeeeccCCCCceeeeec
Q 004217 312 VRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQYELVLS 359 (767)
Q Consensus 312 SpDg~rIva~~~~~d~Gs~~~~~~~~ss~~~~l~~~~~~~~q~~~~~~ 359 (767)
+.|++.|.+ .+..+..+.+||.++++.-....
T Consensus 225 ~~~g~~ia~----------------tsPrGg~~~~~d~~tg~~~~~~~ 256 (305)
T PF07433_consen 225 DRDGRLIAV----------------TSPRGGRVAVWDAATGRLLGSVP 256 (305)
T ss_pred eCCCCEEEE----------------ECCCCCEEEEEECCCCCEeeccc
Confidence 999999987 34567789999999988877663
No 278
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.82 E-value=2.6e-05 Score=57.81 Aligned_cols=34 Identities=35% Similarity=0.486 Sum_probs=32.0
Q ss_pred CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEE
Q 004217 102 PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIID 135 (767)
Q Consensus 102 ~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWD 135 (767)
.+.+|...|.+|+|+|++++|++++.|++|+|||
T Consensus 6 ~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 6 TFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 3568999999999999999999999999999998
No 279
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=97.80 E-value=0.0053 Score=65.43 Aligned_cols=184 Identities=18% Similarity=0.161 Sum_probs=113.9
Q ss_pred EEEcCCCEEEEEeCCCeEEEEeCCCC--------C-CCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEc
Q 004217 76 AGRDARRGLASWVEAESLHHLRPKYC--------P-LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH 146 (767)
Q Consensus 76 A~sd~g~~LaSgs~DgsIrlWd~~t~--------~-L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~ 146 (767)
+..++|+.|+.- .|..|.+=..+.. + -+...-.-.-++||||+.+||.+...|+|+++|+.... +..+.
T Consensus 4 ~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~-lf~I~ 81 (282)
T PF15492_consen 4 ALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE-LFVIP 81 (282)
T ss_pred eecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccce-eEEcC
Confidence 344566666654 4666666555432 1 12233346789999999999999999999999987533 33332
Q ss_pred c-------CCCCcEEEEEccCC-----CcEEEEEeCCCeEEEEECCC-----CeEEEeec----CCCCeEEEEEcCCCCE
Q 004217 147 G-------HRRTPWVVRFHPLN-----PTIIASGSLDHEVRLWNAST-----AECIGSRD----FYRPIASIAFHASGEL 205 (767)
Q Consensus 147 g-------H~~~V~sLafsP~d-----g~lLaSgS~DGtVrIWDl~t-----g~~i~~l~----h~~~VtsVafSPdG~~ 205 (767)
. -...|..+.|-+.. ...|+.-..+|.++-|-+.. .+....+. ....|.++.|+|..++
T Consensus 82 p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~L 161 (282)
T PF15492_consen 82 PAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRL 161 (282)
T ss_pred cccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCE
Confidence 2 12456666675422 22566667788888777532 22233332 4678999999999998
Q ss_pred EEEEEC----C--------cEEEEEcCCCcc-----------cc-C---------C--eEE---ecCCCCeEEEEEccCC
Q 004217 206 LAVASG----H--------KLYIWRYNMREE-----------TS-S---------P--RIV---LRTRRSLRAVHFHPHA 247 (767)
Q Consensus 206 LAsgSd----d--------~V~VWDl~t~~~-----------~~-~---------~--~~l---~~h~~~VtsVaFSPDG 247 (767)
|++|+. + ++..|.+-.+.. +. . . ..+ ..-...|..+..||||
T Consensus 162 LlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg 241 (282)
T PF15492_consen 162 LLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDG 241 (282)
T ss_pred EEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCC
Confidence 888861 1 377776544321 00 0 0 000 1135679999999999
Q ss_pred CeEEEEE---e--eCCcCC
Q 004217 248 APLLLTA---E--VNDLDS 261 (767)
Q Consensus 248 ~~LlaSg---s--vwdl~s 261 (767)
+.|++.- + +|++-.
T Consensus 242 ~~La~ih~sG~lsLW~iPs 260 (282)
T PF15492_consen 242 SLLACIHFSGSLSLWEIPS 260 (282)
T ss_pred CEEEEEEcCCeEEEEecCc
Confidence 9776632 2 676653
No 280
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.80 E-value=0.00018 Score=83.23 Aligned_cols=107 Identities=11% Similarity=0.024 Sum_probs=84.0
Q ss_pred eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC-------------------CCCCCCCCeEEEEECCCCCeEEEEeCCCeEE
Q 004217 72 QIFEAGRDARRGLASWVEAESLHHLRPKYC-------------------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVK 132 (767)
Q Consensus 72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~-------------------~L~gH~~sVtsVaFSpDG~~LASgs~DGtVr 132 (767)
.-++.+.....+++.|+.||.+++..+.+. .|.||..+|.-+.|+.+.+.|-+...+|.|.
T Consensus 17 L~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIi 96 (1189)
T KOG2041|consen 17 LHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLII 96 (1189)
T ss_pred EEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEE
Confidence 445667778899999999999999987652 3679999999999999999999999999999
Q ss_pred EEECCCCeEEEEE--ccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEEC
Q 004217 133 IIDCQTGSCLKVL--HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNA 179 (767)
Q Consensus 133 VWDl~tg~~l~~L--~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl 179 (767)
||-+-.|.-...+ ...+..|.+++|+. ++..++..-.||.|.+=.+
T Consensus 97 VWmlykgsW~EEMiNnRnKSvV~SmsWn~-dG~kIcIvYeDGavIVGsv 144 (1189)
T KOG2041|consen 97 VWMLYKGSWCEEMINNRNKSVVVSMSWNL-DGTKICIVYEDGAVIVGSV 144 (1189)
T ss_pred EEeeecccHHHHHhhCcCccEEEEEEEcC-CCcEEEEEEccCCEEEEee
Confidence 9998777533222 12456788999999 7777777777776655333
No 281
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.78 E-value=0.00052 Score=80.86 Aligned_cols=161 Identities=17% Similarity=0.149 Sum_probs=114.6
Q ss_pred CCCEEEEEeCCCeEEEEeCCCC--CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEE
Q 004217 80 ARRGLASWVEAESLHHLRPKYC--PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRF 157 (767)
Q Consensus 80 ~g~~LaSgs~DgsIrlWd~~t~--~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLaf 157 (767)
.++.++-|+-+|.|++.+.... +...|... ..+|.++++|+.||+|.|-.+-+.+...++. -..++.++++
T Consensus 48 ~~~~~~~GtH~g~v~~~~~~~~~~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial 120 (846)
T KOG2066|consen 48 HDKFFALGTHRGAVYLTTCQGNPKTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIAL 120 (846)
T ss_pred hcceeeeccccceEEEEecCCccccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEe
Confidence 5677777888889988887544 22334333 5689999999999999999998887776664 3577999999
Q ss_pred ccC----CCcEEEEEeCCCeEEEEECCC---CeEEEeecCCCCeEEEEEcCCCCEEEEEECCcEEEEEcCCCccccC---
Q 004217 158 HPL----NPTIIASGSLDHEVRLWNAST---AECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSS--- 227 (767)
Q Consensus 158 sP~----dg~lLaSgS~DGtVrIWDl~t---g~~i~~l~h~~~VtsVafSPdG~~LAsgSdd~V~VWDl~t~~~~~~--- 227 (767)
+|+ ..+.+++|+.-| +.++.-+- ...+..-...++|.++.|. |+++|-+++.+|+|||+.+.+.+..
T Consensus 121 ~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~Gv~vyd~~~~~~l~~i~~ 197 (846)
T KOG2066|consen 121 HPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDGVKVYDTPTRQRLTNIPP 197 (846)
T ss_pred ccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCCcEEEeccccceeeccCC
Confidence 993 256899999888 77765332 2222223467899999995 8899999999999999988875431
Q ss_pred CeEEecCCCCeEEEEEccCCCeE
Q 004217 228 PRIVLRTRRSLRAVHFHPHAAPL 250 (767)
Q Consensus 228 ~~~l~~h~~~VtsVaFSPDG~~L 250 (767)
+........--..+.|.++.+.+
T Consensus 198 p~~~~R~e~fpphl~W~~~~~LV 220 (846)
T KOG2066|consen 198 PSQSVRPELFPPHLHWQDEDRLV 220 (846)
T ss_pred CCCCCCcccCCCceEecCCCeEE
Confidence 11011112234578888877733
No 282
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.76 E-value=0.0045 Score=64.59 Aligned_cols=169 Identities=15% Similarity=0.150 Sum_probs=107.1
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCCCCC-CCCCeEEEEEC-CCCCeEEEEeCCCeEEEEECCCCeEEEEEcc-----CCCCc
Q 004217 80 ARRGLASWVEAESLHHLRPKYCPLSP-PPRSTIAAAFS-PDGKTLASTHGDHTVKIIDCQTGSCLKVLHG-----HRRTP 152 (767)
Q Consensus 80 ~g~~LaSgs~DgsIrlWd~~t~~L~g-H~~sVtsVaFS-pDG~~LASgs~DGtVrVWDl~tg~~l~~L~g-----H~~~V 152 (767)
.+..+++-...+.|..|+..+++... .......+++. +++++ +.+..+ .+.++|..+++....+.. .....
T Consensus 11 ~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~~~G~~~~~~~g~l-~v~~~~-~~~~~d~~~g~~~~~~~~~~~~~~~~~~ 88 (246)
T PF08450_consen 11 DGRLYWVDIPGGRIYRVDPDTGEVEVIDLPGPNGMAFDRPDGRL-YVADSG-GIAVVDPDTGKVTVLADLPDGGVPFNRP 88 (246)
T ss_dssp TTEEEEEETTTTEEEEEETTTTEEEEEESSSEEEEEEECTTSEE-EEEETT-CEEEEETTTTEEEEEEEEETTCSCTEEE
T ss_pred CCEEEEEEcCCCEEEEEECCCCeEEEEecCCCceEEEEccCCEE-EEEEcC-ceEEEecCCCcEEEEeeccCCCcccCCC
Confidence 55666666678888888888774221 11227788888 56554 445554 455569999865443332 23457
Q ss_pred EEEEEccCCCcEEEEEeCC--------CeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEEC--CcEEEEEcCCC
Q 004217 153 WVVRFHPLNPTIIASGSLD--------HEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG--HKLYIWRYNMR 222 (767)
Q Consensus 153 ~sLafsP~dg~lLaSgS~D--------GtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSd--d~V~VWDl~t~ 222 (767)
+.+++.| +++++++.... +.|..++.. ++.......-...+.++|+|+++.|+++.. +.|..+|+...
T Consensus 89 ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~ 166 (246)
T PF08450_consen 89 NDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDAD 166 (246)
T ss_dssp EEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETT
T ss_pred ceEEEcC-CCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeecccccceeEEEecccc
Confidence 8899999 88888886644 567778877 665555555566789999999998877663 44999998644
Q ss_pred cc-ccCCeEEec-C--CCCeEEEEEccCCCeEEE
Q 004217 223 EE-TSSPRIVLR-T--RRSLRAVHFHPHAAPLLL 252 (767)
Q Consensus 223 ~~-~~~~~~l~~-h--~~~VtsVaFSPDG~~Lla 252 (767)
.. +.....+.. . ....-.+++..+|+.+++
T Consensus 167 ~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va 200 (246)
T PF08450_consen 167 GGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVA 200 (246)
T ss_dssp TCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEE
T ss_pred ccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEE
Confidence 32 221122211 1 224788999999985444
No 283
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=97.75 E-value=0.0022 Score=67.61 Aligned_cols=167 Identities=12% Similarity=-0.007 Sum_probs=114.1
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCCC-----CCCCCCCeEEEEECCC-CCeEEEEeCCCeEEEEECCCCeEEEEEccCCC--
Q 004217 79 DARRGLASWVEAESLHHLRPKYCP-----LSPPPRSTIAAAFSPD-GKTLASTHGDHTVKIIDCQTGSCLKVLHGHRR-- 150 (767)
Q Consensus 79 d~g~~LaSgs~DgsIrlWd~~t~~-----L~gH~~sVtsVaFSpD-G~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~-- 150 (767)
.....|+.|+..|...+|...+.+ ...|...|+-+.=.-| ...+..++.|.++++.+++.+.....+ |..
T Consensus 82 ~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~--h~~~~ 159 (344)
T KOG4532|consen 82 NKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAV--HNQNL 159 (344)
T ss_pred ccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCccccee--ecccc
Confidence 356778888889999999987652 1123332221111111 224667889999999998755432222 333
Q ss_pred CcEEEEEccCCCcEEEEEeCCCeEEEEECCCCe--EEEe--ecCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccc
Q 004217 151 TPWVVRFHPLNPTIIASGSLDHEVRLWNASTAE--CIGS--RDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREET 225 (767)
Q Consensus 151 ~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~--~i~~--l~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~ 225 (767)
.+.++.+++ +++++++.+....|..|.+.... .++. ....+.-.+..|+.....+|++..|+ +.|||++.....
T Consensus 160 ~~ns~~~sn-d~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tp 238 (344)
T KOG4532|consen 160 TQNSLHYSN-DPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATP 238 (344)
T ss_pred ceeeeEEcC-CCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccc
Confidence 378899999 99999999999999999887533 2222 22445556788999999999999666 999999876432
Q ss_pred cC--CeEEecCCCCeEEEEEccCCC
Q 004217 226 SS--PRIVLRTRRSLRAVHFHPHAA 248 (767)
Q Consensus 226 ~~--~~~l~~h~~~VtsVaFSPDG~ 248 (767)
.. ......|.+.++.+.|++-|.
T Consensus 239 m~~~sstrp~hnGa~R~c~Fsl~g~ 263 (344)
T KOG4532|consen 239 MAEISSTRPHHNGAFRVCRFSLYGL 263 (344)
T ss_pred hhhhcccCCCCCCceEEEEecCCCc
Confidence 21 122345899999999998665
No 284
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=97.75 E-value=7.3e-05 Score=93.50 Aligned_cols=149 Identities=11% Similarity=0.121 Sum_probs=120.9
Q ss_pred eEEEEEEcCCCEEEEEeCCCeEEEEeCCCCC------CCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEE
Q 004217 72 QIFEAGRDARRGLASWVEAESLHHLRPKYCP------LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL 145 (767)
Q Consensus 72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~------L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L 145 (767)
++++.......+-++|+.||++++|.-..++ ..+. ..|+.+.|+..|+.+..+..||.+-+|.+. .+.....
T Consensus 2211 v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~-s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~ 2288 (2439)
T KOG1064|consen 2211 VRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN-SRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSW 2288 (2439)
T ss_pred eeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCc-chhhhhhhcccCCceeeeccCCceeecccC-Ccceecc
Confidence 5666666777888999999999999876652 2244 889999999999999999999999999976 5566677
Q ss_pred ccCCCCcEEEEEccCCCcEEEEEe---CCCeEEEEECCCCe---EEEeecCCCCeEEEEEcCCCCEEEEEECCc-EEEEE
Q 004217 146 HGHRRTPWVVRFHPLNPTIIASGS---LDHEVRLWNASTAE---CIGSRDFYRPIASIAFHASGELLAVASGHK-LYIWR 218 (767)
Q Consensus 146 ~gH~~~V~sLafsP~dg~lLaSgS---~DGtVrIWDl~tg~---~i~~l~h~~~VtsVafSPdG~~LAsgSdd~-V~VWD 218 (767)
+.|......++|-. ..+++.+ .++.+.+||..-.. ++. ..|...++++++-|..++|++|+.++ |++||
T Consensus 2289 qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~-~~H~~gaT~l~~~P~~qllisggr~G~v~l~D 2364 (2439)
T KOG1064|consen 2289 QCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSLVH-TCHDGGATVLAYAPKHQLLISGGRKGEVCLFD 2364 (2439)
T ss_pred ccCCccccceeeee---hhhhccccCCCCCcccchhcccCcccceee-eecCCCceEEEEcCcceEEEecCCcCcEEEee
Confidence 88988888888854 6677754 57889999976422 333 56999999999999999999999766 99999
Q ss_pred cCCCcccc
Q 004217 219 YNMREETS 226 (767)
Q Consensus 219 l~t~~~~~ 226 (767)
++..+...
T Consensus 2365 ~rqrql~h 2372 (2439)
T KOG1064|consen 2365 IRQRQLRH 2372 (2439)
T ss_pred hHHHHHHH
Confidence 99887644
No 285
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=97.75 E-value=0.00012 Score=76.64 Aligned_cols=92 Identities=23% Similarity=0.320 Sum_probs=71.6
Q ss_pred CCeEEEEeCCCCC-CC---CCCCCeEEEEECC-CCCeEEEEeCCCeEEEEECCCCeEE-EEEccCCCCcEEEEEccCCCc
Q 004217 90 AESLHHLRPKYCP-LS---PPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCL-KVLHGHRRTPWVVRFHPLNPT 163 (767)
Q Consensus 90 DgsIrlWd~~t~~-L~---gH~~sVtsVaFSp-DG~~LASgs~DGtVrVWDl~tg~~l-~~L~gH~~~V~sLafsP~dg~ 163 (767)
-+..+.|+++..+ +. .--..|.+++-+| ..+++++|+.||.+-+||.+..... ..++.|+..++.+-|||.++.
T Consensus 158 ~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~ 237 (319)
T KOG4714|consen 158 QDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPE 237 (319)
T ss_pred ccceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCch
Confidence 3345566655431 11 1123499999999 5556778888999999999887543 557899999999999999999
Q ss_pred EEEEEeCCCeEEEEECCC
Q 004217 164 IIASGSLDHEVRLWNAST 181 (767)
Q Consensus 164 lLaSgS~DGtVrIWDl~t 181 (767)
.|+++++||.+..||..+
T Consensus 238 ~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 238 HLFTCSEDGSLWHWDAST 255 (319)
T ss_pred heeEecCCCcEEEEcCCC
Confidence 999999999999999874
No 286
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=97.73 E-value=0.00044 Score=74.86 Aligned_cols=179 Identities=14% Similarity=0.194 Sum_probs=130.2
Q ss_pred cCCCEEEEEeCCCeEEEEeCCC-CC-----CCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECC----CCeEEEEEccC
Q 004217 79 DARRGLASWVEAESLHHLRPKY-CP-----LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQ----TGSCLKVLHGH 148 (767)
Q Consensus 79 d~g~~LaSgs~DgsIrlWd~~t-~~-----L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~----tg~~l~~L~gH 148 (767)
.....+++.++|.++|+|--.. ++ ...-+.+++++.++++-..|+.|-..|++.-+.+. ....++.+..|
T Consensus 34 ~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h 113 (404)
T KOG1409|consen 34 PKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAH 113 (404)
T ss_pred cCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhh
Confidence 4567789999999999997543 22 22346789999999999999999999999988664 34455666789
Q ss_pred CCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCC-----------------------------e------------EEEe
Q 004217 149 RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTA-----------------------------E------------CIGS 187 (767)
Q Consensus 149 ~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg-----------------------------~------------~i~~ 187 (767)
...|..+-|+- ...++++.+.|..+.---.+.+ + .+..
T Consensus 114 ~~~v~~~if~~-~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~ 192 (404)
T KOG1409|consen 114 QARVSAIVFSL-THEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITT 192 (404)
T ss_pred hcceeeEEecC-CceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEE
Confidence 99999988887 6778888877765432111111 1 1111
Q ss_pred -ecCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCcC
Q 004217 188 -RDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLD 260 (767)
Q Consensus 188 -l~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~ 260 (767)
.+|...+.+++|.+....|.+|..+. +.+||+-..+... ....+|...|..+..-+.-+.+++.++ .|+++
T Consensus 193 ~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~--~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 193 FNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTA--YELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMN 270 (404)
T ss_pred EcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCccee--eeeccchhhhhhhhhhhhheeeeeccCCCeEEEEecc
Confidence 24778899999999999999998665 9999997766533 467788888888887777666666554 56555
No 287
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=0.0002 Score=78.63 Aligned_cols=151 Identities=20% Similarity=0.173 Sum_probs=110.0
Q ss_pred CCCCCCCeEEEEECCCCC-eEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCC
Q 004217 103 LSPPPRSTIAAAFSPDGK-TLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST 181 (767)
Q Consensus 103 L~gH~~sVtsVaFSpDG~-~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~t 181 (767)
+.+|...|.+++|||..+ +|..++.+.+|+|.|+++..++..+..| ..+++++|.-++.+++..|...|.|.+||++.
T Consensus 189 lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~ 267 (463)
T KOG1645|consen 189 LPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQ 267 (463)
T ss_pred ccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccC
Confidence 557888899999999666 7889999999999999999999888877 78999999997888999999999999999997
Q ss_pred CeEE-Eeec---CCCCeEEEEEcC------CCCEEEEEECCcEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEE
Q 004217 182 AECI-GSRD---FYRPIASIAFHA------SGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLL 251 (767)
Q Consensus 182 g~~i-~~l~---h~~~VtsVafSP------dG~~LAsgSdd~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~Ll 251 (767)
.+-. ..+. ...+|..++.-+ -|. |+++..-.+..|++.......+.....+..+.+.+++.++-.+.++
T Consensus 268 ~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gg-lLv~~lt~l~f~ei~~s~~~~p~vlele~pG~cismqy~~~snh~l 346 (463)
T KOG1645|consen 268 PEGPLMELVANVTINPVHKIAPVQPNKIFTSGG-LLVFALTVLQFYEIVFSAECLPCVLELEPPGICISMQYHGVSNHLL 346 (463)
T ss_pred CCchHhhhhhhhccCcceeecccCccccccccc-eEEeeehhhhhhhhhccccCCCcccccCCCcceeeeeecCccceEE
Confidence 5432 2221 234444444322 233 3334445577887765554333333344466777888888778888
Q ss_pred EEEe
Q 004217 252 LTAE 255 (767)
Q Consensus 252 aSgs 255 (767)
++-.
T Consensus 347 ~tyR 350 (463)
T KOG1645|consen 347 LTYR 350 (463)
T ss_pred EEec
Confidence 8765
No 288
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.69 E-value=0.00028 Score=75.32 Aligned_cols=147 Identities=16% Similarity=0.226 Sum_probs=104.6
Q ss_pred CCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCe---EEEEEccCC-----CCcEEEEEccCCCcEEEEEeCCCeEEE
Q 004217 105 PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS---CLKVLHGHR-----RTPWVVRFHPLNPTIIASGSLDHEVRL 176 (767)
Q Consensus 105 gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~---~l~~L~gH~-----~~V~sLafsP~dg~lLaSgS~DGtVrI 176 (767)
.|+--|.++.|+.|...++++ .|-.|.+|+++-.. .+..++.|. .-|++..|+|...+.+...+..|+|++
T Consensus 170 aH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl 248 (460)
T COG5170 170 AHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKL 248 (460)
T ss_pred cceeEeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEe
Confidence 466678899999999888876 46789999986432 234445554 458899999988889999999999999
Q ss_pred EECCCCeEE----Eee-------------cCCCCeEEEEEcCCCCEEEEEECCcEEEEEcCCCccccCCeEEecC-----
Q 004217 177 WNASTAECI----GSR-------------DFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRT----- 234 (767)
Q Consensus 177 WDl~tg~~i----~~l-------------~h~~~VtsVafSPdG~~LAsgSdd~V~VWDl~t~~~~~~~~~l~~h----- 234 (767)
-|++..... +.+ +....|..+.|+++|+++++-..-.|+|||++..+... ....-|
T Consensus 249 ~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pi--kTi~~h~~l~~ 326 (460)
T COG5170 249 NDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPI--KTIPMHCDLMD 326 (460)
T ss_pred hhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccCCc--eeechHHHHHH
Confidence 999843221 111 12346788999999999998888889999998776422 222222
Q ss_pred -------CCCe---EEEEEccCCCeEEEEE
Q 004217 235 -------RRSL---RAVHFHPHAAPLLLTA 254 (767)
Q Consensus 235 -------~~~V---tsVaFSPDG~~LlaSg 254 (767)
.+.| ..+.||.|.+.+++++
T Consensus 327 ~l~d~YEnDaifdkFeisfSgd~~~v~sgs 356 (460)
T COG5170 327 ELNDVYENDAIFDKFEISFSGDDKHVLSGS 356 (460)
T ss_pred HHHhhhhccceeeeEEEEecCCcccccccc
Confidence 1222 3577888887665544
No 289
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.66 E-value=0.00027 Score=80.20 Aligned_cols=137 Identities=14% Similarity=0.175 Sum_probs=102.9
Q ss_pred CeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeC-----------CCeEEEE
Q 004217 109 STIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSL-----------DHEVRLW 177 (767)
Q Consensus 109 sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~-----------DGtVrIW 177 (767)
.-+-+.|||-|.+|++-..-| |.+|--.+-..++.|. |.+ |.-+.||| +.++|+|=+. ...++||
T Consensus 212 Tetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp~-Vq~idfSP-~EkYLVT~s~~p~~~~~~d~e~~~l~IW 287 (698)
T KOG2314|consen 212 TETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HPG-VQFIDFSP-NEKYLVTYSPEPIIVEEDDNEGQQLIIW 287 (698)
T ss_pred eeeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CCC-ceeeecCC-ccceEEEecCCccccCcccCCCceEEEE
Confidence 356799999999999988765 7889765555566664 654 78899999 9999999542 2579999
Q ss_pred ECCCCeEEEeecC---CCCe-EEEEEcCCCCEEEEEECCcEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEE
Q 004217 178 NASTAECIGSRDF---YRPI-ASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLL 252 (767)
Q Consensus 178 Dl~tg~~i~~l~h---~~~V-tsVafSPdG~~LAsgSdd~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~Lla 252 (767)
|+++|...+.+.. ...+ .-..||-|++|+|--..++|.||+......+. ...-.-..|....|+|.+..|+.
T Consensus 288 DI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld---~Kslki~gIr~FswsP~~~llAY 363 (698)
T KOG2314|consen 288 DIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLD---KKSLKISGIRDFSWSPTSNLLAY 363 (698)
T ss_pred EccccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeec---ccccCCccccCcccCCCcceEEE
Confidence 9999998887642 2222 24679999999999888999999987654333 11112467889999999886553
No 290
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.63 E-value=0.0027 Score=73.15 Aligned_cols=113 Identities=14% Similarity=0.162 Sum_probs=82.1
Q ss_pred CeEEEEECC-CCCeEEEE----eCCCe----EEEEECCCCeEE--EE-EccCCCCcEEEEEccCCCcEEEEEeCCCeEEE
Q 004217 109 STIAAAFSP-DGKTLAST----HGDHT----VKIIDCQTGSCL--KV-LHGHRRTPWVVRFHPLNPTIIASGSLDHEVRL 176 (767)
Q Consensus 109 sVtsVaFSp-DG~~LASg----s~DGt----VrVWDl~tg~~l--~~-L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrI 176 (767)
...++.||. +...+.+. +.+|. -.+|++..++.. .. --..+..|.+++++| +.+.++.|+.||+|.+
T Consensus 207 dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~DgSiiL 285 (545)
T PF11768_consen 207 DPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSP-SEDKLVLGCEDGSIIL 285 (545)
T ss_pred CcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCc-ccceEEEEecCCeEEE
Confidence 457888887 55555543 22343 346776654421 11 124678899999999 9999999999999999
Q ss_pred EECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCc
Q 004217 177 WNASTAECIGSRDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMRE 223 (767)
Q Consensus 177 WDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~ 223 (767)
||...+..... ...-..+.++|||+|.++++|++.+ +.+||+.-..
T Consensus 286 yD~~~~~t~~~-ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 286 YDTTRGVTLLA-KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred EEcCCCeeeee-eecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 99987644333 4456678999999999999999755 9999987553
No 291
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.62 E-value=0.0069 Score=65.87 Aligned_cols=170 Identities=17% Similarity=0.161 Sum_probs=115.6
Q ss_pred EEcCCCEEEEE-----eCCCeEEEEeCCCC-----CCCCCCCCeEEEEECCCCCeEEEEeC------------------C
Q 004217 77 GRDARRGLASW-----VEAESLHHLRPKYC-----PLSPPPRSTIAAAFSPDGKTLASTHG------------------D 128 (767)
Q Consensus 77 ~sd~g~~LaSg-----s~DgsIrlWd~~t~-----~L~gH~~sVtsVaFSpDG~~LASgs~------------------D 128 (767)
++.+|+.|++- ...|.|-+||.... ++..|.-.-..+.+.|||+.|+.+-. +
T Consensus 58 fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~ 137 (305)
T PF07433_consen 58 FSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQ 137 (305)
T ss_pred EcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcC
Confidence 45677777765 34667999999832 56677777889999999988887632 2
Q ss_pred CeEEEEECCCCeEEEE--E--ccCCCCcEEEEEccCCCcEEEEEeCCCe-------EEEEECCCCeEEEee--------c
Q 004217 129 HTVKIIDCQTGSCLKV--L--HGHRRTPWVVRFHPLNPTIIASGSLDHE-------VRLWNASTAECIGSR--------D 189 (767)
Q Consensus 129 GtVrVWDl~tg~~l~~--L--~gH~~~V~sLafsP~dg~lLaSgS~DGt-------VrIWDl~tg~~i~~l--------~ 189 (767)
-.+-..|..+|+.+.+ + .-|+-.|..+++.+ ++..++..-..+. |-+++- ++.+..+ .
T Consensus 138 psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~-~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~ 214 (305)
T PF07433_consen 138 PSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDG-DGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRR 214 (305)
T ss_pred CceEEEecCCCceeeeeecCccccccceeeEEecC-CCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHh
Confidence 2355567788887766 4 34777899999998 7666665544332 333332 3322222 2
Q ss_pred CCCCeEEEEEcCCCCEEEEEE--CCcEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217 190 FYRPIASIAFHASGELLAVAS--GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (767)
Q Consensus 190 h~~~VtsVafSPdG~~LAsgS--dd~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs 255 (767)
....+-+|+++++|.++++++ .+.+.+||..++..+. ...-..+..|+-.+++ ++++++.
T Consensus 215 l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~-----~~~l~D~cGva~~~~~-f~~ssG~ 276 (305)
T PF07433_consen 215 LNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLG-----SVPLPDACGVAPTDDG-FLVSSGQ 276 (305)
T ss_pred hCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEee-----ccccCceeeeeecCCc-eEEeCCC
Confidence 457899999999999999988 3459999999987644 1223456777777777 4555543
No 292
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.62 E-value=0.00015 Score=83.90 Aligned_cols=142 Identities=12% Similarity=0.156 Sum_probs=105.2
Q ss_pred CCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCe---------------EEEEEccCCCCcEEEEEccCCCcEEEEEeC
Q 004217 106 PPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS---------------CLKVLHGHRRTPWVVRFHPLNPTIIASGSL 170 (767)
Q Consensus 106 H~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~---------------~l~~L~gH~~~V~sLafsP~dg~lLaSgS~ 170 (767)
......|++|+....+||+|+.||.++|..+.+.. .-+++.||.+.|..+.|+. +.+.|-+...
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe-~~QKLTtSDt 91 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNE-NNQKLTTSDT 91 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecc-ccccccccCC
Confidence 34568899999999999999999999999875421 2256789999999999998 7888999999
Q ss_pred CCeEEEEECCCCeEEEee---cCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccC
Q 004217 171 DHEVRLWNASTAECIGSR---DFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPH 246 (767)
Q Consensus 171 DGtVrIWDl~tg~~i~~l---~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPD 246 (767)
+|-|.+|-+-++...... ..++.|.+++|..+|+.+.....|+ |.|=.++...... ..+. ......+.|++|
T Consensus 92 ~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwg--KeLk--g~~l~hv~ws~D 167 (1189)
T KOG2041|consen 92 SGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWG--KELK--GQLLAHVLWSED 167 (1189)
T ss_pred CceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecc--hhcc--hheccceeeccc
Confidence 999999999888765442 3567789999999999888887665 5444443322111 0111 122347889998
Q ss_pred CCeEEE
Q 004217 247 AAPLLL 252 (767)
Q Consensus 247 G~~Lla 252 (767)
.+.++.
T Consensus 168 ~~~~Lf 173 (1189)
T KOG2041|consen 168 LEQALF 173 (1189)
T ss_pred HHHHHh
Confidence 876554
No 293
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=97.61 E-value=0.0011 Score=71.97 Aligned_cols=151 Identities=14% Similarity=0.213 Sum_probs=115.8
Q ss_pred eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC--------CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEEC-------
Q 004217 72 QIFEAGRDARRGLASWVEAESLHHLRPKYC--------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDC------- 136 (767)
Q Consensus 72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~--------~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl------- 136 (767)
..+.........|+.|-..+++.-+..... ....|...|..+-|+....++++.+.|..+. |..
T Consensus 71 ~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~-~hc~e~~~~l 149 (404)
T KOG1409|consen 71 CSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFA-WHCTESGNRL 149 (404)
T ss_pred ceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceE-EEeeccCCcc
Confidence 556667778899999999999988776432 3457999999999998888888888775432 221
Q ss_pred -----------------------------------CCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCC
Q 004217 137 -----------------------------------QTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST 181 (767)
Q Consensus 137 -----------------------------------~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~t 181 (767)
..-..+.++.+|.+.+.++.|.+ ...++++|..|..|.+||+.-
T Consensus 150 g~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~-~~~~LfSg~~d~~vi~wdigg 228 (404)
T KOG1409|consen 150 GGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP-GQRLLFSGASDHSVIMWDIGG 228 (404)
T ss_pred cceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcC-CCcEEEeccccCceEEEeccC
Confidence 11124556789999999999999 889999999999999999975
Q ss_pred CeE--EEeecCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCcc
Q 004217 182 AEC--IGSRDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREE 224 (767)
Q Consensus 182 g~~--i~~l~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~ 224 (767)
.+- .....|...|..+..-+.-+.+.+++.|+ |.+||++....
T Consensus 229 ~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~ 274 (404)
T KOG1409|consen 229 RKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRV 274 (404)
T ss_pred CcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceee
Confidence 443 33456888888888877777777777554 99999986543
No 294
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.60 E-value=0.00026 Score=82.40 Aligned_cols=168 Identities=15% Similarity=0.210 Sum_probs=112.8
Q ss_pred EEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCC--CCeEEEEECCCC---CeEEEEeCCCeEEEEECCCC---eEE
Q 004217 75 EAGRDARRGLASWVEAESLHHLRPKYC----PLSPPP--RSTIAAAFSPDG---KTLASTHGDHTVKIIDCQTG---SCL 142 (767)
Q Consensus 75 vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~--~sVtsVaFSpDG---~~LASgs~DGtVrVWDl~tg---~~l 142 (767)
+.+...|+.++.++.-| +.+.|+... ...-|. -.|-.+.||+.. .++++.+ ...-.||++... ..-
T Consensus 30 ~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts-~qkaiiwnlA~ss~~aIe 107 (1081)
T KOG0309|consen 30 VSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTS-NQKAIIWNLAKSSSNAIE 107 (1081)
T ss_pred eeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecC-cchhhhhhhhcCCccceE
Confidence 33445666666665544 334444332 122232 347788888833 2455544 456678998642 334
Q ss_pred EEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCe-EEEeec-CCCCeEEEEEcCCCCEEEEEECCc-EEEEEc
Q 004217 143 KVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAE-CIGSRD-FYRPIASIAFHASGELLAVASGHK-LYIWRY 219 (767)
Q Consensus 143 ~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~-~i~~l~-h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl 219 (767)
..+.||+..|+.+-|+|.+...+++++.|-.|..||+++.. .+..+. -......|+|+-....+.+.+.++ |++||+
T Consensus 108 f~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~ 187 (1081)
T KOG0309|consen 108 FVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDL 187 (1081)
T ss_pred EEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEec
Confidence 56689999999999999899999999999999999999854 333322 345567789987665555555444 999999
Q ss_pred CCCccccCCeEEecCCCCeEEEEEccC
Q 004217 220 NMREETSSPRIVLRTRRSLRAVHFHPH 246 (767)
Q Consensus 220 ~t~~~~~~~~~l~~h~~~VtsVaFSPD 246 (767)
+.+... ...+.+|...|+.++|..-
T Consensus 188 r~gs~p--l~s~K~~vs~vn~~~fnr~ 212 (1081)
T KOG0309|consen 188 RKGSTP--LCSLKGHVSSVNSIDFNRF 212 (1081)
T ss_pred cCCCcc--eEEecccceeeehHHHhhh
Confidence 987652 2456678888888888754
No 295
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.59 E-value=0.026 Score=58.93 Aligned_cols=173 Identities=15% Similarity=0.129 Sum_probs=107.9
Q ss_pred EEEEEcCCCEEEEEeCCCeEEEEeCCCCCC--------CC-CCCCeEEEEECCCCCeEEEEeCC--------CeEEEEEC
Q 004217 74 FEAGRDARRGLASWVEAESLHHLRPKYCPL--------SP-PPRSTIAAAFSPDGKTLASTHGD--------HTVKIIDC 136 (767)
Q Consensus 74 ~vA~sd~g~~LaSgs~DgsIrlWd~~t~~L--------~g-H~~sVtsVaFSpDG~~LASgs~D--------GtVrVWDl 136 (767)
-+++...+..++.+...+ +.++|..++++ .. .....+++++.++|++.++.... |.|..++.
T Consensus 44 G~~~~~~~g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~ 122 (246)
T PF08450_consen 44 GMAFDRPDGRLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDP 122 (246)
T ss_dssp EEEEECTTSEEEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEET
T ss_pred eEEEEccCCEEEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECC
Confidence 344442335555555544 45558777621 12 34568899999999977776543 56777887
Q ss_pred CCCeEEEEEccCCCCcEEEEEccCCCc-EEEEEeCCCeEEEEECCCCe--EE--Ee---ecCC-CCeEEEEEcCCCCEEE
Q 004217 137 QTGSCLKVLHGHRRTPWVVRFHPLNPT-IIASGSLDHEVRLWNASTAE--CI--GS---RDFY-RPIASIAFHASGELLA 207 (767)
Q Consensus 137 ~tg~~l~~L~gH~~~V~sLafsP~dg~-lLaSgS~DGtVrIWDl~tg~--~i--~~---l~h~-~~VtsVafSPdG~~LA 207 (767)
. ++...... .-.....|+|+| +++ ++++-+..+.|..+|+.... .. .. +... +..-.++++.+|++.+
T Consensus 123 ~-~~~~~~~~-~~~~pNGi~~s~-dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~v 199 (246)
T PF08450_consen 123 D-GKVTVVAD-GLGFPNGIAFSP-DGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWV 199 (246)
T ss_dssp T-SEEEEEEE-EESSEEEEEEET-TSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEE
T ss_pred C-CeEEEEec-CcccccceEECC-cchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEE
Confidence 7 55443333 345678999999 666 45577788999999986322 11 11 2222 2477899999998766
Q ss_pred EEE-CCcEEEEEcCCCccccCCeEEecCCCCeEEEEEc-cCCCeEEEEE
Q 004217 208 VAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFH-PHAAPLLLTA 254 (767)
Q Consensus 208 sgS-dd~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFS-PDG~~LlaSg 254 (767)
+.. .++|.++|.+ ++.+. .+.-....+++++|. ++.+.|++|.
T Consensus 200 a~~~~~~I~~~~p~-G~~~~---~i~~p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 200 ADWGGGRIVVFDPD-GKLLR---EIELPVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEETTTEEEEEETT-SCEEE---EEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred EEcCCCEEEEECCC-ccEEE---EEcCCCCCEEEEEEECCCCCEEEEEe
Confidence 655 4569999987 55433 233334589999994 6767676654
No 296
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.53 E-value=0.019 Score=65.69 Aligned_cols=265 Identities=17% Similarity=0.163 Sum_probs=157.0
Q ss_pred eeecccccceecCCc---ceEEEEEEcCCCEEEEEeC-----------CCeEEEEeCCCCCCC-------CCCCCeEEEE
Q 004217 56 KRLLGETARKCSGSF---SQIFEAGRDARRGLASWVE-----------AESLHHLRPKYCPLS-------PPPRSTIAAA 114 (767)
Q Consensus 56 k~~wd~~~~~~~~s~---s~~~vA~sd~g~~LaSgs~-----------DgsIrlWd~~t~~L~-------gH~~sVtsVa 114 (767)
..+|+.........| .+..+-++..-++|++++. ...+.+||+.++.++ +....-.-..
T Consensus 233 I~lWGG~~f~r~~RF~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~fr 312 (698)
T KOG2314|consen 233 IALWGGESFDRIQRFYHPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFR 312 (698)
T ss_pred eeeecCccHHHHHhccCCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEE
Confidence 345655443332222 3666778888899998863 256899999998433 1112233578
Q ss_pred ECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeC-----CCeEEEEECCCCeEEEeec
Q 004217 115 FSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSL-----DHEVRLWNASTAECIGSRD 189 (767)
Q Consensus 115 FSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~-----DGtVrIWDl~tg~~i~~l~ 189 (767)
||.|++++|.-..| .|.||+..+-.++..-.-.-..|....|+| .+++||.=.. -..+.|-.+.+++.+++..
T Consensus 313 WS~DdKy~Arm~~~-sisIyEtpsf~lld~Kslki~gIr~FswsP-~~~llAYwtpe~~~~parvtL~evPs~~~iRt~n 390 (698)
T KOG2314|consen 313 WSHDDKYFARMTGN-SISIYETPSFMLLDKKSLKISGIRDFSWSP-TSNLLAYWTPETNNIPARVTLMEVPSKREIRTKN 390 (698)
T ss_pred eccCCceeEEeccc-eEEEEecCceeeecccccCCccccCcccCC-CcceEEEEcccccCCcceEEEEecCccceeeecc
Confidence 99999999987764 799998776433321111235678889999 7787776432 2457777777777776643
Q ss_pred -CCCCeEEEEEcCCCCEEEEEEC--------C---cEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEeeC
Q 004217 190 -FYRPIASIAFHASGELLAVASG--------H---KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVN 257 (767)
Q Consensus 190 -h~~~VtsVafSPdG~~LAsgSd--------d---~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgsvw 257 (767)
++-.-..+-|-.+|.+|++--+ + .+.|+.++.... +.....-...|...+|-|.|+.+++-..-
T Consensus 391 lfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdI---pve~velke~vi~FaWEP~gdkF~vi~g~- 466 (698)
T KOG2314|consen 391 LFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDI---PVEVVELKESVIAFAWEPHGDKFAVISGN- 466 (698)
T ss_pred ceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCC---CceeeecchheeeeeeccCCCeEEEEEcc-
Confidence 2222234667788888876532 1 167777776654 22455567889999999999976654321
Q ss_pred CcCCCCcceeEeecCCCccCCCCeEEEecCCCCCCCceeeccCCCCCCceeeEEecCCCEEEEeecCCCCCCcccccccc
Q 004217 258 DLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLR 337 (767)
Q Consensus 258 dl~s~~~~~~l~t~sG~~~~p~~~v~l~~~~Ssd~~~L~sg~~~~slpil~psFSpDg~rIva~~~~~d~Gs~~~~~~~~ 337 (767)
+....-....+.+ .+....|...... -.+..+.|+|.|+.+++..-
T Consensus 467 ~~k~tvsfY~~e~------------------~~~~~~lVk~~dk--~~~N~vfwsPkG~fvvva~l-------------- 512 (698)
T KOG2314|consen 467 TVKNTVSFYAVET------------------NIKKPSLVKELDK--KFANTVFWSPKGRFVVVAAL-------------- 512 (698)
T ss_pred ccccceeEEEeec------------------CCCchhhhhhhcc--cccceEEEcCCCcEEEEEEe--------------
Confidence 1110000000110 0001111111110 12236889999999998221
Q ss_pred cCCceeeeeccCCCCceeeeecc
Q 004217 338 SSSSVRLLTYSTPSGQYELVLSP 360 (767)
Q Consensus 338 ss~~~~l~~~~~~~~q~~~~~~p 360 (767)
.|.+..|.|||..-.....+-+|
T Consensus 513 ~s~~g~l~F~D~~~a~~k~~~~~ 535 (698)
T KOG2314|consen 513 VSRRGDLEFYDTDYADLKDTASP 535 (698)
T ss_pred cccccceEEEecchhhhhhccCc
Confidence 12566799999986555444443
No 297
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=97.52 E-value=0.0015 Score=73.70 Aligned_cols=152 Identities=10% Similarity=0.134 Sum_probs=107.3
Q ss_pred CeEEEEeCCCCCCC---CCCCCeEEEEECCCCCeEEEEe--CCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEE
Q 004217 91 ESLHHLRPKYCPLS---PPPRSTIAAAFSPDGKTLASTH--GDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTII 165 (767)
Q Consensus 91 gsIrlWd~~t~~L~---gH~~sVtsVaFSpDG~~LASgs--~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lL 165 (767)
..+.++++....+. +-.++|...+|+|+++.+++.+ .+-.+.++|++.. ....+. ...=..+-|+| ..+++
T Consensus 255 snLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~P--e~~rNT~~fsp-~~r~i 330 (561)
T COG5354 255 SNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFP--EQKRNTIFFSP-HERYI 330 (561)
T ss_pred ceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccccc-eEEecC--CcccccccccC-cccEE
Confidence 34566666544222 5588999999999888876655 5788999998865 343332 33345578999 88888
Q ss_pred EEEeCC---CeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEE-------CCcEEEEEcCCCccccCCeEEecCC
Q 004217 166 ASGSLD---HEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS-------GHKLYIWRYNMREETSSPRIVLRTR 235 (767)
Q Consensus 166 aSgS~D---GtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgS-------dd~V~VWDl~t~~~~~~~~~l~~h~ 235 (767)
+.++-| |.+-+||......+...-.......+.|+|+|+++.+.. |+.|.|||+......
T Consensus 331 l~agF~nl~gni~i~~~~~rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f---------- 400 (561)
T COG5354 331 LFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF---------- 400 (561)
T ss_pred EEecCCccccceEEeccCCceEEEEEeecCCceEeeccCCceEEEecCCCcccccCcceEEEEecCchhh----------
Confidence 887655 679999988765554222223345568999999887765 234999998766531
Q ss_pred CCeEEEEEccCCCeEEEEEeeC
Q 004217 236 RSLRAVHFHPHAAPLLLTAEVN 257 (767)
Q Consensus 236 ~~VtsVaFSPDG~~LlaSgsvw 257 (767)
..+.+.|.|.|++..+++..|
T Consensus 401 -el~~~~W~p~~~~~ttsSs~~ 421 (561)
T COG5354 401 -ELTNITWDPSGQYVTTSSSCP 421 (561)
T ss_pred -hhhhccccCCcccceeeccCC
Confidence 467888999999877777666
No 298
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=97.50 E-value=0.012 Score=73.23 Aligned_cols=179 Identities=13% Similarity=0.179 Sum_probs=117.0
Q ss_pred eEEEEEEcCCCEEEEEeCCCeEEEE----eCCCCC--C-CCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECC-------
Q 004217 72 QIFEAGRDARRGLASWVEAESLHHL----RPKYCP--L-SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQ------- 137 (767)
Q Consensus 72 ~~~vA~sd~g~~LaSgs~DgsIrlW----d~~t~~--L-~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~------- 137 (767)
.+.+..-.+...++.+..+|.|-+. +..... . ..-..+|.+++||||+.+|+....+++|.+.+..
T Consensus 78 ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~ 157 (928)
T PF04762_consen 78 IVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEV 157 (928)
T ss_pred EEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEe
Confidence 4444455566677777788888888 544432 2 2345689999999999999999999888876420
Q ss_pred --------C--------CeEEEEEcc------------------------CCCCcEEEEEccCCCcEEEEEeC---C---
Q 004217 138 --------T--------GSCLKVLHG------------------------HRRTPWVVRFHPLNPTIIASGSL---D--- 171 (767)
Q Consensus 138 --------t--------g~~l~~L~g------------------------H~~~V~sLafsP~dg~lLaSgS~---D--- 171 (767)
. |+.-.+|+| +...-..|+|-. |+.+|+..+. +
T Consensus 158 ~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRG-DG~yFAVss~~~~~~~~ 236 (928)
T PF04762_consen 158 PLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRG-DGEYFAVSSVEPETGSR 236 (928)
T ss_pred ecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECC-CCcEEEEEEEEcCCCce
Confidence 0 111111211 112334688988 8999988775 2
Q ss_pred CeEEEEECCCCeEEEeec-CCCCeEEEEEcCCCCEEEEEEC--Cc--EEEEEcCCCccccCCeEEe--cCCCCeEEEEEc
Q 004217 172 HEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASG--HK--LYIWRYNMREETSSPRIVL--RTRRSLRAVHFH 244 (767)
Q Consensus 172 GtVrIWDl~tg~~i~~l~-h~~~VtsVafSPdG~~LAsgSd--d~--V~VWDl~t~~~~~~~~~l~--~h~~~VtsVaFS 244 (767)
..+|+|+-. |+....-+ -.+--.+++|-|.|++||+... ++ |.+|.-+..+... +.+. .....|..+.|+
T Consensus 237 R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhge--F~l~~~~~~~~v~~l~Wn 313 (928)
T PF04762_consen 237 RVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGE--FTLRFDPEEEKVIELAWN 313 (928)
T ss_pred eEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeee--EecCCCCCCceeeEEEEC
Confidence 479999865 65544433 2223357899999999999873 33 8888755433322 2222 345689999999
Q ss_pred cCCCeEEEEE
Q 004217 245 PHAAPLLLTA 254 (767)
Q Consensus 245 PDG~~LlaSg 254 (767)
+|+..|++..
T Consensus 314 ~ds~iLAv~~ 323 (928)
T PF04762_consen 314 SDSEILAVWL 323 (928)
T ss_pred CCCCEEEEEe
Confidence 9999777644
No 299
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=97.49 E-value=0.00025 Score=76.71 Aligned_cols=112 Identities=12% Similarity=0.108 Sum_probs=91.0
Q ss_pred CCCEEEEEeCCCeEEEEeCCCC--------CCCCCCCCeEEEEECC-CCCeEEEEeCCCeEEEEECCCCeE---EEEEcc
Q 004217 80 ARRGLASWVEAESLHHLRPKYC--------PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSC---LKVLHG 147 (767)
Q Consensus 80 ~g~~LaSgs~DgsIrlWd~~t~--------~L~gH~~sVtsVaFSp-DG~~LASgs~DGtVrVWDl~tg~~---l~~L~g 147 (767)
.+..++.|...|.|...|+..+ +..-|..+|+++..-. ++++|.+.+.+|+|++||++--++ +.++.|
T Consensus 263 s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeG 342 (425)
T KOG2695|consen 263 SDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEG 342 (425)
T ss_pred cCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeec
Confidence 4677889999999999999765 1235888999988777 788999999999999999987666 889999
Q ss_pred CCCCcEE--EEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCCC
Q 004217 148 HRRTPWV--VRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYR 192 (767)
Q Consensus 148 H~~~V~s--LafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~ 192 (767)
|-..-.- +-.++ ....+++++.|...|||.++.+..+.++....
T Consensus 343 HvN~~a~l~~~v~~-eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~ 388 (425)
T KOG2695|consen 343 HVNLSAYLPAHVKE-EEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPY 388 (425)
T ss_pred cccccccccccccc-ccceEEEccCeeEEEEEecccCceeeccCCCC
Confidence 9654333 33456 66788899999999999999999999877544
No 300
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.47 E-value=0.00072 Score=80.48 Aligned_cols=142 Identities=17% Similarity=0.167 Sum_probs=112.6
Q ss_pred EEEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeC---------CCeEEEEECCCCe
Q 004217 74 FEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHG---------DHTVKIIDCQTGS 140 (767)
Q Consensus 74 ~vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~---------DGtVrVWDl~tg~ 140 (767)
+...+.+++.+.+|...|+|.+-|.++. ++..|++.|.+++.. |++|++|+. |.-|+|||++..+
T Consensus 180 v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv~--GNlLitCG~S~R~~~l~~D~FvkVYDLRmmr 257 (1118)
T KOG1275|consen 180 VTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDVQ--GNLLITCGYSMRRYNLAMDPFVKVYDLRMMR 257 (1118)
T ss_pred eEEEEecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeecc--CCeEEEeecccccccccccchhhhhhhhhhh
Confidence 4556678899999999999999999886 578999999887775 889999986 5669999999877
Q ss_pred EEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECC---CCe-EEEee-cCCCCeEEEEEcCCCCEEEEEECC-cE
Q 004217 141 CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAS---TAE-CIGSR-DFYRPIASIAFHASGELLAVASGH-KL 214 (767)
Q Consensus 141 ~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~---tg~-~i~~l-~h~~~VtsVafSPdG~~LAsgSdd-~V 214 (767)
.+.-+.-+.++ .-++|+|.-...++.++..|.+.+-|.. +.. -+..+ .....+..++++++|+.+|.|... .|
T Consensus 258 al~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v 336 (1118)
T KOG1275|consen 258 ALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHV 336 (1118)
T ss_pred ccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcE
Confidence 77666655554 4588999778889999999999999933 321 12222 244559999999999999999854 49
Q ss_pred EEEE
Q 004217 215 YIWR 218 (767)
Q Consensus 215 ~VWD 218 (767)
.+|-
T Consensus 337 ~~wa 340 (1118)
T KOG1275|consen 337 NLWA 340 (1118)
T ss_pred eeec
Confidence 9996
No 301
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.41 E-value=0.00096 Score=78.25 Aligned_cols=133 Identities=19% Similarity=0.274 Sum_probs=101.0
Q ss_pred CCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCC-----------CcEEEEEeCCCeEEE
Q 004217 108 RSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLN-----------PTIIASGSLDHEVRL 176 (767)
Q Consensus 108 ~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~d-----------g~lLaSgS~DGtVrI 176 (767)
..-.+++|+|.| +||.|+.. .|.|.|..+-+.+..+.-|+..|+.+.|.|.. .-+|+++...|.|.+
T Consensus 16 sN~~A~Dw~~~G-LiAygshs-lV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil 93 (1062)
T KOG1912|consen 16 SNRNAADWSPSG-LIAYGSHS-LVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIIL 93 (1062)
T ss_pred ccccccccCccc-eEEEecCc-eEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEE
Confidence 346789999876 77877764 79999999999999999999999999998831 236778888899999
Q ss_pred EECCCCeEEEeec-CCCCeEEEEEcCC---CC-EE-EEEECCcEEEEEcCCCccccCCeEEecCCCCeEEEEEcc
Q 004217 177 WNASTAECIGSRD-FYRPIASIAFHAS---GE-LL-AVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHP 245 (767)
Q Consensus 177 WDl~tg~~i~~l~-h~~~VtsVafSPd---G~-~L-AsgSdd~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSP 245 (767)
||...+..+..+. +.+++..++|-+. .+ +| |.-+...|.+|+..+++..+ ..........++.+.|
T Consensus 94 ~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~W---k~~ys~~iLs~f~~DP 165 (1062)
T KOG1912|consen 94 VDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFW---KYDYSHEILSCFRVDP 165 (1062)
T ss_pred EEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceee---ccccCCcceeeeeeCC
Confidence 9999988887776 5678888888763 33 33 33344559999999998765 2222334556677777
No 302
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=97.40 E-value=0.055 Score=57.86 Aligned_cols=230 Identities=18% Similarity=0.165 Sum_probs=127.6
Q ss_pred EEECCCCCeEEEEeCCCeEEEEECCCC--eEEEEEccCC---CCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEe
Q 004217 113 AAFSPDGKTLASTHGDHTVKIIDCQTG--SCLKVLHGHR---RTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS 187 (767)
Q Consensus 113 VaFSpDG~~LASgs~DGtVrVWDl~tg--~~l~~L~gH~---~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~ 187 (767)
++.+.||++||.. .|..|.|-..++. ..+.+..-.+ ..=..++|+| |+.+|+.+...|+|++||+...++...
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSp-D~tlLa~a~S~G~i~vfdl~g~~lf~I 80 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSP-DCTLLAYAESTGTIRVFDLMGSELFVI 80 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECC-CCcEEEEEcCCCeEEEEecccceeEEc
Confidence 5677899988875 4567777765542 2333333222 2346799999 999999999999999999986544322
Q ss_pred e-------cCCCCeEEEEEcCCC-------CEEEEEECCcEEEEEcCCC--ccccC--CeEE-ecCCCCeEEEEEccCCC
Q 004217 188 R-------DFYRPIASIAFHASG-------ELLAVASGHKLYIWRYNMR--EETSS--PRIV-LRTRRSLRAVHFHPHAA 248 (767)
Q Consensus 188 l-------~h~~~VtsVafSPdG-------~~LAsgSdd~V~VWDl~t~--~~~~~--~~~l-~~h~~~VtsVaFSPDG~ 248 (767)
- .....|..+.|-+-. ++|+....+.++-|-+..+ +.-.. ...+ ..+...|.++.++|..+
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~ 160 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHR 160 (282)
T ss_pred CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCC
Confidence 1 134567777775532 3566666666666655322 11110 1112 22477999999999999
Q ss_pred eEEEEEeeCCcC-----CCCcceeEeecCCCccCCCCeEEEecCC--CCCCCc--------eeeccCCCCCCceeeEEec
Q 004217 249 PLLLTAEVNDLD-----SSESSLTLATSPGYWRYPPPVICMAGAH--SSSHPG--------LAEEVPLITPPFLRPSFVR 313 (767)
Q Consensus 249 ~LlaSgsvwdl~-----s~~~~~~l~t~sG~~~~p~~~v~l~~~~--Ssd~~~--------L~sg~~~~slpil~psFSp 313 (767)
.|+++|...+-+ ..-.....+.++++-.|.. +....+.- .+.... +........--++..+.||
T Consensus 161 LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~-v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSP 239 (282)
T PF15492_consen 161 LLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQ-VTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSP 239 (282)
T ss_pred EEEEeccCCCCCccccccccCceEEEEcCCCCcEEE-ccccCccccccccccceeeccceeeeeccccCCCceEEEEECC
Confidence 777766522211 0111222333333211100 00000000 000000 1111111122344789999
Q ss_pred CCCEEEEeecCCCCCCcccccccccCCceeeeeccCCCCceeeeeccCC
Q 004217 314 DDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQYELVLSPIA 362 (767)
Q Consensus 314 Dg~rIva~~~~~d~Gs~~~~~~~~ss~~~~l~~~~~~~~q~~~~~~p~~ 362 (767)
||..+++.|. +..+-+|+-++-...+-+...+
T Consensus 240 dg~~La~ih~-----------------sG~lsLW~iPsL~~~~~W~~~e 271 (282)
T PF15492_consen 240 DGSLLACIHF-----------------SGSLSLWEIPSLRLQRSWKQDE 271 (282)
T ss_pred CCCEEEEEEc-----------------CCeEEEEecCcchhhcccchhh
Confidence 9999998554 3457788888877777775444
No 303
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=97.39 E-value=0.014 Score=72.79 Aligned_cols=138 Identities=15% Similarity=0.240 Sum_probs=92.2
Q ss_pred CeEEEEECCCCCeEEEEeC---C---CeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeC---CCeEEEEEC
Q 004217 109 STIAAAFSPDGKTLASTHG---D---HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSL---DHEVRLWNA 179 (767)
Q Consensus 109 sVtsVaFSpDG~~LASgs~---D---GtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~---DGtVrIWDl 179 (767)
.-..|+|--||+++|+.+. + ..+|||+-+ |....+-..-.+--.+++|-| .++++++... ...|.+|.-
T Consensus 211 ~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrP-sG~lIA~~q~~~~~~~VvFfEr 288 (928)
T PF04762_consen 211 GRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRP-SGNLIASSQRLPDRHDVVFFER 288 (928)
T ss_pred CceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCC-CCCEEEEEEEcCCCcEEEEEec
Confidence 4567899999999998765 2 579999955 764444443334445789999 8999998764 345666653
Q ss_pred CCCeEEEee-----cCCCCeEEEEEcCCCCEEEEEECCcEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCe
Q 004217 180 STAECIGSR-----DFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAP 249 (767)
Q Consensus 180 ~tg~~i~~l-----~h~~~VtsVafSPdG~~LAsgSdd~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~ 249 (767)
+|-.-..+ .....|..+.|++|+..||+--.+.|.+|-..+-.--.+..........+..+.|+|....
T Consensus 289 -NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~ 362 (928)
T PF04762_consen 289 -NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDRVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPL 362 (928)
T ss_pred -CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCCceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCC
Confidence 33332222 2356789999999999999988888999987654311101112222344556999996543
No 304
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=97.39 E-value=0.016 Score=65.78 Aligned_cols=261 Identities=13% Similarity=0.095 Sum_probs=155.0
Q ss_pred eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC-CC-CCCCCCeEEEEECCCCCeEEEEeCC---------------CeEEEE
Q 004217 72 QIFEAGRDARRGLASWVEAESLHHLRPKYC-PL-SPPPRSTIAAAFSPDGKTLASTHGD---------------HTVKII 134 (767)
Q Consensus 72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~-~L-~gH~~sVtsVaFSpDG~~LASgs~D---------------GtVrVW 134 (767)
...+..+..|..|++.... .|.+|..... ++ .-....|..+.|||.+++|.+=+.. ..+.||
T Consensus 35 ~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vw 113 (561)
T COG5354 35 VAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRFRHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVW 113 (561)
T ss_pred hhheeecCcchheehhhcc-ceEEccccchhheeeeecCCceecccCcccceeeeeccCCccChhhccCCccccCceeEE
Confidence 3344455677777766433 4777776554 21 1233459999999999999885542 359999
Q ss_pred ECCCCeEEEEEccCCCC--cE-EEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEe-ec--CCCCeEEEEEcCCCC--EE
Q 004217 135 DCQTGSCLKVLHGHRRT--PW-VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-RD--FYRPIASIAFHASGE--LL 206 (767)
Q Consensus 135 Dl~tg~~l~~L~gH~~~--V~-sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~-l~--h~~~VtsVafSPdG~--~L 206 (767)
|+.+|..+..+.+...+ .+ -+.|+- +.++++-. ....++|+++ ++..... +. ....|....|+|.|+ .|
T Consensus 114 d~~sg~iv~sf~~~~q~~~~Wp~~k~s~-~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~l 190 (561)
T COG5354 114 DIASGMIVFSFNGISQPYLGWPVLKFSI-DDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDEL 190 (561)
T ss_pred eccCceeEeeccccCCcccccceeeeee-cchhhhhh-ccCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceE
Confidence 99999999998876665 55 678888 66666655 4456999997 4333211 11 135678888999764 33
Q ss_pred EEEE------CCcEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCCcCCCCcceeEeecCCCccCCCC
Q 004217 207 AVAS------GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPP 280 (767)
Q Consensus 207 AsgS------dd~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgsvwdl~s~~~~~~l~t~sG~~~~p~~ 280 (767)
|.=. ...+++|.+.....+... .+. .-.-..+.|++.|++|++-..... .+.. ..|-..
T Consensus 191 a~~tPEk~~kpa~~~i~sIp~~s~l~tk-~lf--k~~~~qLkW~~~g~~ll~l~~t~~-ksnK-----------syfges 255 (561)
T COG5354 191 AYWTPEKLNKPAMVRILSIPKNSVLVTK-NLF--KVSGVQLKWQVLGKYLLVLVMTHT-KSNK-----------SYFGES 255 (561)
T ss_pred EEEccccCCCCcEEEEEEccCCCeeeee-eeE--eecccEEEEecCCceEEEEEEEee-eccc-----------ceeccc
Confidence 3322 123999998865544411 111 122347889999998876432111 1111 111112
Q ss_pred eEEEecCCCCCCCceeeccCCCCCCceeeEEecCCCEEEEeecCCCCCCcccccccccCCceeeeeccCCCCceeeeecc
Q 004217 281 VICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQYELVLSP 360 (767)
Q Consensus 281 ~v~l~~~~Ssd~~~L~sg~~~~slpil~psFSpDg~rIva~~~~~d~Gs~~~~~~~~ss~~~~l~~~~~~~~q~~~~~~p 360 (767)
-+.+-.....+ +.... +...|+...+|.|++++..+-++-.++.......+ + .+.+|-+++.++...++|
T Consensus 256 nLyl~~~~e~~---i~V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr-----~-Nl~~~~Pe~~rNT~~fsp 325 (561)
T COG5354 256 NLYLLRITERS---IPVEK-DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLR-----G-NLRFYFPEQKRNTIFFSP 325 (561)
T ss_pred eEEEEeecccc---cceec-cccccceeeeecccCCceeEEecccccceeecccc-----c-ceEEecCCcccccccccC
Confidence 23332222111 11111 34558888999999999888665555444333322 1 267777777777666655
Q ss_pred C
Q 004217 361 I 361 (767)
Q Consensus 361 ~ 361 (767)
.
T Consensus 326 ~ 326 (561)
T COG5354 326 H 326 (561)
T ss_pred c
Confidence 3
No 305
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=97.38 E-value=0.00039 Score=72.90 Aligned_cols=143 Identities=15% Similarity=0.121 Sum_probs=93.5
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCCCCCCCCCC-----eEEEEECCCCCeEEEEeC-----CCeEEEEECCCCeEEEEEccC
Q 004217 79 DARRGLASWVEAESLHHLRPKYCPLSPPPRS-----TIAAAFSPDGKTLASTHG-----DHTVKIIDCQTGSCLKVLHGH 148 (767)
Q Consensus 79 d~g~~LaSgs~DgsIrlWd~~t~~L~gH~~s-----VtsVaFSpDG~~LASgs~-----DGtVrVWDl~tg~~l~~L~gH 148 (767)
-.+..++++.+|+.+-+.+.+.-.-..|.-+ -.+.+.-..++.|.++.- -+..++|+++..+.+..-+.-
T Consensus 99 ~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~ 178 (319)
T KOG4714|consen 99 MTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKA 178 (319)
T ss_pred ccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccccc
Confidence 3567788889999998888765211111111 112222223444444321 124556666543322211222
Q ss_pred CCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEe--ecCCCCeEEEEEcCCC-CEEEEEECCc-EEEEEcCC
Q 004217 149 RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS--RDFYRPIASIAFHASG-ELLAVASGHK-LYIWRYNM 221 (767)
Q Consensus 149 ~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~--l~h~~~VtsVafSPdG-~~LAsgSdd~-V~VWDl~t 221 (767)
...|.+++-+|...+++++|+.||.+-+||.+....... ..|+.+++.+-|+|.. ..|++++.|+ +..||..+
T Consensus 179 ~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 179 LDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred cccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 234999999997778889999999999999998755444 3489999999999954 6888888766 99999876
No 306
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.35 E-value=0.0022 Score=76.58 Aligned_cols=171 Identities=13% Similarity=0.108 Sum_probs=118.1
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCCCC----CCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEE
Q 004217 80 ARRGLASWVEAESLHHLRPKYCPLS----PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVV 155 (767)
Q Consensus 80 ~g~~LaSgs~DgsIrlWd~~t~~L~----gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sL 155 (767)
+...++-|.-...+-.+|+.+.+.. -....|.-++. +++.|.+|...|+|.+-|..+.+.++++..|++.|..+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf 223 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF 223 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeee
Confidence 3344444444445556676654321 11223555555 47899999999999999999999999999999999887
Q ss_pred EEccCCCcEEEEEeC---------CCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCC-EEEEEE-CCcEEEEEcCCCcc
Q 004217 156 RFHPLNPTIIASGSL---------DHEVRLWNASTAECIGSRDFYRPIASIAFHASGE-LLAVAS-GHKLYIWRYNMREE 224 (767)
Q Consensus 156 afsP~dg~lLaSgS~---------DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~-~LAsgS-dd~V~VWDl~t~~~ 224 (767)
.. .+++|++++. |.-|++||++.-+.+.-+.......-+.|+|.-. .+++.+ .+...+-|..+-..
T Consensus 224 Dv---~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN 300 (1118)
T KOG1275|consen 224 DV---QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN 300 (1118)
T ss_pred ec---cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccCC
Confidence 76 5789999875 5678999999887776666554456678888653 444444 66688888433222
Q ss_pred c-cCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217 225 T-SSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (767)
Q Consensus 225 ~-~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs 255 (767)
. .....+......+.++++|++|+.|+.+-.
T Consensus 301 P~~~~~~v~p~~s~i~~fDiSsn~~alafgd~ 332 (1118)
T KOG1275|consen 301 PPAGVKMVNPNGSGISAFDISSNGDALAFGDH 332 (1118)
T ss_pred CccceeEEccCCCcceeEEecCCCceEEEecc
Confidence 1 112233334566999999999997777654
No 307
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.35 E-value=0.013 Score=72.24 Aligned_cols=195 Identities=13% Similarity=0.147 Sum_probs=121.7
Q ss_pred eeecccccceecCCcceEEEEEEcCCCEEEEEeCCCeEEEEeCCCCCC---CCCCCCeEEEEECCCCCeEEEEeCCCeEE
Q 004217 56 KRLLGETARKCSGSFSQIFEAGRDARRGLASWVEAESLHHLRPKYCPL---SPPPRSTIAAAFSPDGKTLASTHGDHTVK 132 (767)
Q Consensus 56 k~~wd~~~~~~~~s~s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~L---~gH~~sVtsVaFSpDG~~LASgs~DGtVr 132 (767)
.++|......-+++...+.+.+.-++..+......|.|.+-|..+..+ ..-..+|.+++||||+++++..+.++++.
T Consensus 55 v~~~~~s~~~~~gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll 134 (1265)
T KOG1920|consen 55 VRLVAESFLPEDGDDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLL 134 (1265)
T ss_pred ccceeecccCcCCCcceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEE
Confidence 344444433333443455566666777788888899998888887642 23456899999999999999998888877
Q ss_pred EEEC----CC-------------------CeEEEEEccCC---------------------CCcEEEEEccCCCcEEEEE
Q 004217 133 IIDC----QT-------------------GSCLKVLHGHR---------------------RTPWVVRFHPLNPTIIASG 168 (767)
Q Consensus 133 VWDl----~t-------------------g~~l~~L~gH~---------------------~~V~sLafsP~dg~lLaSg 168 (767)
+-+- -. |+....|+|.. +.=..|.|-- |+++++..
T Consensus 135 ~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRg-Dg~~fAVs 213 (1265)
T KOG1920|consen 135 FMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRG-DGEYFAVS 213 (1265)
T ss_pred EEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEcc-CCcEEEEE
Confidence 6542 00 11111232111 1123488887 88888873
Q ss_pred e----CC-CeEEEEECCCCeEEEe-ecCCCCeEEEEEcCCCCEEEEEE----CCcEEEEEcCCCccccCCeEEecCCCCe
Q 004217 169 S----LD-HEVRLWNASTAECIGS-RDFYRPIASIAFHASGELLAVAS----GHKLYIWRYNMREETSSPRIVLRTRRSL 238 (767)
Q Consensus 169 S----~D-GtVrIWDl~tg~~i~~-l~h~~~VtsVafSPdG~~LAsgS----dd~V~VWDl~t~~~~~~~~~l~~h~~~V 238 (767)
. .+ ..|++||-. |..-.. ....+--.+++|-|.|.++++-. ++.|.+|.-+.-....-..........|
T Consensus 214 ~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~v 292 (1265)
T KOG1920|consen 214 FVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEV 292 (1265)
T ss_pred EEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccch
Confidence 2 23 789999977 433222 12233345799999999998875 3449998755433221001111123348
Q ss_pred EEEEEccCCCeEEE
Q 004217 239 RAVHFHPHAAPLLL 252 (767)
Q Consensus 239 tsVaFSPDG~~Lla 252 (767)
..++|+.++..|++
T Consensus 293 e~L~Wns~sdiLAv 306 (1265)
T KOG1920|consen 293 EELAWNSNSDILAV 306 (1265)
T ss_pred heeeecCCCCceee
Confidence 99999999996655
No 308
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.33 E-value=0.0087 Score=68.38 Aligned_cols=161 Identities=15% Similarity=0.149 Sum_probs=101.3
Q ss_pred eEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEE-eCC---CeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCE
Q 004217 130 TVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASG-SLD---HEVRLWNASTAECIGSRDFYRPIASIAFHASGEL 205 (767)
Q Consensus 130 tVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSg-S~D---GtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~ 205 (767)
.+.+-|.+ |.....+..-...+..-.|+| ++..++.. -.. ..+.++|+.+++........+.-...+|+|||+.
T Consensus 174 ~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~-~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~ 251 (425)
T COG0823 174 ELALGDYD-GYNQQKLTDSGSLILTPAWSP-DGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSK 251 (425)
T ss_pred eEEEEccC-CcceeEecccCcceeccccCc-CCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCE
Confidence 44454544 555555655556677788999 55544433 222 3599999999988877776777777899999998
Q ss_pred EEEEEC--Cc--EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCCcCCCCcceeEeecCCCccCCCCe
Q 004217 206 LAVASG--HK--LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPV 281 (767)
Q Consensus 206 LAsgSd--d~--V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgsvwdl~s~~~~~~l~t~sG~~~~p~~~ 281 (767)
|+.... +. |+++|+..+...+ +....+.-..-.|+|||++++.+++. .|+ +.
T Consensus 252 l~f~~~rdg~~~iy~~dl~~~~~~~----Lt~~~gi~~~Ps~spdG~~ivf~Sdr---------------~G~-----p~ 307 (425)
T COG0823 252 LAFSSSRDGSPDIYLMDLDGKNLPR----LTNGFGINTSPSWSPDGSKIVFTSDR---------------GGR-----PQ 307 (425)
T ss_pred EEEEECCCCCccEEEEcCCCCccee----cccCCccccCccCCCCCCEEEEEeCC---------------CCC-----cc
Confidence 888873 33 9999998877322 33333333478899999999888531 111 12
Q ss_pred EEEecCCCCCCCceeeccCCCCCCceeeEEecCCCEEEE
Q 004217 282 ICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISL 320 (767)
Q Consensus 282 v~l~~~~Ssd~~~L~sg~~~~slpil~psFSpDg~rIva 320 (767)
+++.+...+....+..... ....|.+||||++|+.
T Consensus 308 I~~~~~~g~~~~riT~~~~----~~~~p~~SpdG~~i~~ 342 (425)
T COG0823 308 IYLYDLEGSQVTRLTFSGG----GNSNPVWSPDGDKIVF 342 (425)
T ss_pred eEEECCCCCceeEeeccCC----CCcCccCCCCCCEEEE
Confidence 3333333322222221111 1117889999999998
No 309
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.31 E-value=0.0033 Score=72.43 Aligned_cols=75 Identities=25% Similarity=0.413 Sum_probs=64.1
Q ss_pred CCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCC
Q 004217 105 PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTA 182 (767)
Q Consensus 105 gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg 182 (767)
..+..|.+++++|+.+.|+.|+.||.|.+||...+... +....-.+..++||| ++.+++.|+..|.+.+||+.-.
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp-~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHP-DGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcC-CCcEEEEEcCCceEEEEEeecC
Confidence 56778999999999999999999999999998776433 333445678999999 9999999999999999998744
No 310
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.27 E-value=0.0029 Score=74.76 Aligned_cols=135 Identities=19% Similarity=0.202 Sum_probs=100.8
Q ss_pred CCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEE
Q 004217 107 PRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIG 186 (767)
Q Consensus 107 ~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~ 186 (767)
...++|++++ ++.|+.|..+|.|++++... .. .+...|... .- ++.+++||+.||+|.|-.+-+.+...
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~------~~-~Gey~asCS~DGkv~I~sl~~~~~~~ 107 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQG-NP-KTNFDHSSS------IL-EGEYVASCSDDGKVVIGSLFTDDEIT 107 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCC-cc-ccccccccc------cc-CCceEEEecCCCcEEEeeccCCccce
Confidence 3457777776 68999999999999999763 33 344445544 33 79999999999999999999999999
Q ss_pred eecCCCCeEEEEEcCC-----CCEEEEEECCcEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217 187 SRDFYRPIASIAFHAS-----GELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (767)
Q Consensus 187 ~l~h~~~VtsVafSPd-----G~~LAsgSdd~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs 255 (767)
.+....++.+++++|+ .+.+++|+..++.++.-+-..... ........+.|.++.|. |.+++.+..
T Consensus 108 ~~df~rpiksial~Pd~~~~~sk~fv~GG~aglvL~er~wlgnk~-~v~l~~~eG~I~~i~W~--g~lIAWand 178 (846)
T KOG2066|consen 108 QYDFKRPIKSIALHPDFSRQQSKQFVSGGMAGLVLSERNWLGNKD-SVVLSEGEGPIHSIKWR--GNLIAWAND 178 (846)
T ss_pred eEecCCcceeEEeccchhhhhhhheeecCcceEEEehhhhhcCcc-ceeeecCccceEEEEec--CcEEEEecC
Confidence 9999999999999998 346777776557777644332211 12345567899999996 666665543
No 311
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.23 E-value=0.0026 Score=72.61 Aligned_cols=147 Identities=17% Similarity=0.217 Sum_probs=96.2
Q ss_pred CCCCCCCeEEEEECCCCCeEEEEeC---C-CeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCe--EEE
Q 004217 103 LSPPPRSTIAAAFSPDGKTLASTHG---D-HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHE--VRL 176 (767)
Q Consensus 103 L~gH~~sVtsVaFSpDG~~LASgs~---D-GtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGt--VrI 176 (767)
+..-...+..-+|+|+++.++.... . ..+.++|+++++....+. -.+.-...+|+|++..++++...|+. |.+
T Consensus 188 l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~ 266 (425)
T COG0823 188 LTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYL 266 (425)
T ss_pred ecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEE
Confidence 3344556788899999998765532 2 369999999887544443 22233456899955556666677776 455
Q ss_pred EECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEECCc----EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEE
Q 004217 177 WNASTAECIGSRDFYRPIASIAFHASGELLAVASGHK----LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLL 252 (767)
Q Consensus 177 WDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSdd~----V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~Lla 252 (767)
.|+.+++..+.....+.-..-.|+|||++|+..++.. |.++|.+.....+ +......-..-.|+|||++|+.
T Consensus 267 ~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~r----iT~~~~~~~~p~~SpdG~~i~~ 342 (425)
T COG0823 267 MDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTR----LTFSGGGNSNPVWSPDGDKIVF 342 (425)
T ss_pred EcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeE----eeccCCCCcCccCCCCCCEEEE
Confidence 5777776444222233334677999999998888633 8888887776522 2222222227889999999887
Q ss_pred EE
Q 004217 253 TA 254 (767)
Q Consensus 253 Sg 254 (767)
..
T Consensus 343 ~~ 344 (425)
T COG0823 343 ES 344 (425)
T ss_pred Ee
Confidence 76
No 312
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.0021 Score=70.96 Aligned_cols=94 Identities=15% Similarity=0.230 Sum_probs=78.1
Q ss_pred EEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEE-EEE
Q 004217 131 VKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELL-AVA 209 (767)
Q Consensus 131 VrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~L-Asg 209 (767)
|++.+..+.+....+.+|...|..++|+|.+..++..++.+.+|+|.|+++..++..+.....+++++|+-|...+ ..|
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaG 254 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAG 254 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEe
Confidence 6777766666666778889999999999966668999999999999999999999888877999999999988754 444
Q ss_pred ECCc-EEEEEcCCCcc
Q 004217 210 SGHK-LYIWRYNMREE 224 (767)
Q Consensus 210 Sdd~-V~VWDl~t~~~ 224 (767)
-.++ |.|||++..+.
T Consensus 255 l~nG~VlvyD~R~~~~ 270 (463)
T KOG1645|consen 255 LQNGMVLVYDMRQPEG 270 (463)
T ss_pred ccCceEEEEEccCCCc
Confidence 4444 99999997654
No 313
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.21 E-value=0.036 Score=66.42 Aligned_cols=179 Identities=15% Similarity=0.133 Sum_probs=122.5
Q ss_pred EEEEEcCCCEEEEEeCCCeEEEEeCCCC---CCCCCCCC-eEEEEECCCCCeEEEEeCCC-----eEEEEECCCC-----
Q 004217 74 FEAGRDARRGLASWVEAESLHHLRPKYC---PLSPPPRS-TIAAAFSPDGKTLASTHGDH-----TVKIIDCQTG----- 139 (767)
Q Consensus 74 ~vA~sd~g~~LaSgs~DgsIrlWd~~t~---~L~gH~~s-VtsVaFSpDG~~LASgs~DG-----tVrVWDl~tg----- 139 (767)
...++.++..++.|+.+|.|.+.+-... .++.+... |.-+-.-.+..+|++.+.|+ .|+|||++.-
T Consensus 28 isc~~s~~~~vvigt~~G~V~~Ln~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 28 ISCCSSSTGSVVIGTADGRVVILNSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred eeEEcCCCceEEEeeccccEEEecccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 3445678899999999999988876543 35566666 44444433446888877765 4999998642
Q ss_pred -eEE--EEEcc-----CCCCcEEEEEccCCCcEEEEEeCCCeEEEEEC--CCCe---EEEeecCCCCeEEEEEcCCCCE-
Q 004217 140 -SCL--KVLHG-----HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNA--STAE---CIGSRDFYRPIASIAFHASGEL- 205 (767)
Q Consensus 140 -~~l--~~L~g-----H~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl--~tg~---~i~~l~h~~~VtsVafSPdG~~- 205 (767)
.++ +.+.+ ...++.+++.+. +-+.++.|-.||.|..+.- ...+ .........+|+.+++..+++.
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~-~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~ 186 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSE-DLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSV 186 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEc-cccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCcee
Confidence 233 22222 245678899998 7899999999999999842 2111 1112345789999999999986
Q ss_pred EEEEECCcEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217 206 LAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (767)
Q Consensus 206 LAsgSdd~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs 255 (767)
++++....|.+|.+..... .......|+..++|..|++....++.+++
T Consensus 187 lFv~Tt~~V~~y~l~gr~p--~~~~ld~~G~~lnCss~~~~t~qfIca~~ 234 (933)
T KOG2114|consen 187 LFVATTEQVMLYSLSGRTP--SLKVLDNNGISLNCSSFSDGTYQFICAGS 234 (933)
T ss_pred EEEEecceeEEEEecCCCc--ceeeeccCCccceeeecCCCCccEEEecC
Confidence 6666677799999884441 12346778889999999987664555443
No 314
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=97.20 E-value=0.0013 Score=83.06 Aligned_cols=151 Identities=15% Similarity=0.234 Sum_probs=115.7
Q ss_pred CCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEc-cCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeE
Q 004217 106 PPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH-GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC 184 (767)
Q Consensus 106 H~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~-gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~ 184 (767)
+-..|.++.=+|...+.++|+.||.|++|....+..+..++ .-...|+.+.|+. .|+.+..+..||.+.+|.+. .+.
T Consensus 2207 ~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~-qGnk~~i~d~dg~l~l~q~~-pk~ 2284 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNH-QGNKFGIVDGDGDLSLWQAS-PKP 2284 (2439)
T ss_pred ccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcc-cCCceeeeccCCceeecccC-Ccc
Confidence 44567888888888899999999999999998888776664 2237899999999 88888889999999999987 333
Q ss_pred EEe-ecCCCCeEEEEEcCCCCEEEEEE---CCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe----
Q 004217 185 IGS-RDFYRPIASIAFHASGELLAVAS---GHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE---- 255 (767)
Q Consensus 185 i~~-l~h~~~VtsVafSPdG~~LAsgS---dd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs---- 255 (767)
... ..|........|-. ..+++++ +++ +.+||........ .....|...++++++-|..+.++++|.
T Consensus 2285 ~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s--~v~~~H~~gaT~l~~~P~~qllisggr~G~v 2360 (2439)
T KOG1064|consen 2285 YTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNS--LVHTCHDGGATVLAYAPKHQLLISGGRKGEV 2360 (2439)
T ss_pred eeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccc--eeeeecCCCceEEEEcCcceEEEecCCcCcE
Confidence 333 34777777777764 6677665 444 9999976544322 233789999999999999997666665
Q ss_pred -eCCcCCC
Q 004217 256 -VNDLDSS 262 (767)
Q Consensus 256 -vwdl~s~ 262 (767)
+||++..
T Consensus 2361 ~l~D~rqr 2368 (2439)
T KOG1064|consen 2361 CLFDIRQR 2368 (2439)
T ss_pred EEeehHHH
Confidence 8887743
No 315
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.15 E-value=0.016 Score=67.96 Aligned_cols=149 Identities=11% Similarity=0.028 Sum_probs=107.2
Q ss_pred eEEEEEEcCCCEEEEEeCCCeEEEEeCCCCCC-----CCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeE-----
Q 004217 72 QIFEAGRDARRGLASWVEAESLHHLRPKYCPL-----SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSC----- 141 (767)
Q Consensus 72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~L-----~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~----- 141 (767)
.....+....++++-|+..|.+.+++-..+++ .+-.+.+..+..|++..++|.|+..|.|.|+-+..+..
T Consensus 36 v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~ 115 (726)
T KOG3621|consen 36 VKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDY 115 (726)
T ss_pred EEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCccee
Confidence 34444556889999999999999999887632 23455677788899999999999999999998766321
Q ss_pred EEEE-ccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCC-----eEEEeecCCCCeEEEEEcCCCCEEEEEECCcEE
Q 004217 142 LKVL-HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTA-----ECIGSRDFYRPIASIAFHASGELLAVASGHKLY 215 (767)
Q Consensus 142 l~~L-~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg-----~~i~~l~h~~~VtsVafSPdG~~LAsgSdd~V~ 215 (767)
+..+ +.|+..|++++|++ ++..+++|...|+|.+-.+.+. .....+...+.|-.+.+. ..+|.+++--+..
T Consensus 116 ~t~~d~~~~~rVTal~Ws~-~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~--q~~LLVStl~r~~ 192 (726)
T KOG3621|consen 116 VTPCDKSHKCRVTALEWSK-NGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL--QSYLLVSTLTRCI 192 (726)
T ss_pred eccccccCCceEEEEEecc-cccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc--cceehHhhhhhhh
Confidence 1111 34788999999999 9999999999999999888762 112224456777666654 3455555555556
Q ss_pred EEEcCCCc
Q 004217 216 IWRYNMRE 223 (767)
Q Consensus 216 VWDl~t~~ 223 (767)
+++++.++
T Consensus 193 Lc~tE~et 200 (726)
T KOG3621|consen 193 LCQTEAET 200 (726)
T ss_pred eeecchhH
Confidence 66665544
No 316
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.13 E-value=0.00011 Score=84.56 Aligned_cols=171 Identities=17% Similarity=0.167 Sum_probs=119.7
Q ss_pred CCEEEEEeCCCeEEEEeCCCC------CCCCCCCCeEEEEECC-CCCeEEEEeC----CCeEEEEECCCC--eE--EEEE
Q 004217 81 RRGLASWVEAESLHHLRPKYC------PLSPPPRSTIAAAFSP-DGKTLASTHG----DHTVKIIDCQTG--SC--LKVL 145 (767)
Q Consensus 81 g~~LaSgs~DgsIrlWd~~t~------~L~gH~~sVtsVaFSp-DG~~LASgs~----DGtVrVWDl~tg--~~--l~~L 145 (767)
.-.++.|..+|.|-+-..... ...+|.+.+++++|++ |.++||.|-. |-.++|||+.++ .+ -..|
T Consensus 70 ~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~f 149 (783)
T KOG1008|consen 70 RCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLF 149 (783)
T ss_pred hhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCcccccc
Confidence 356778888999988887654 2457888999999999 7888888843 567999999876 22 2223
Q ss_pred cc-CCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCCCCeEEEEEcC-CCCEEEEEECCcEEEEE-cCCC
Q 004217 146 HG-HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHA-SGELLAVASGHKLYIWR-YNMR 222 (767)
Q Consensus 146 ~g-H~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~~VtsVafSP-dG~~LAsgSdd~V~VWD-l~t~ 222 (767)
.+ ......+++|-. +.+++.+|.....++++|++........-....+..+..+| .+.|++.-.++.|.+|| .++-
T Consensus 150 s~~~l~gqns~cwlr-d~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~dg~iAiwD~~rni 228 (783)
T KOG1008|consen 150 SSSTLDGQNSVCWLR-DTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNSDGDIAIWDTYRNI 228 (783)
T ss_pred ccccccCcccccccc-CcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccccCceeeccchhhh
Confidence 32 334556889986 89999999999999999998433222222334566778888 78899888888899999 4433
Q ss_pred ccccCCeEEecC-----CCCeEEEEEccCCCeEEEEEe
Q 004217 223 EETSSPRIVLRT-----RRSLRAVHFHPHAAPLLLTAE 255 (767)
Q Consensus 223 ~~~~~~~~l~~h-----~~~VtsVaFSPDG~~LlaSgs 255 (767)
+.. .....| ...+..++|+|...-++++..
T Consensus 229 enp---l~~i~~~~N~~~~~l~~~aycPtrtglla~l~ 263 (783)
T KOG1008|consen 229 ENP---LQIILRNENKKPKQLFALAYCPTRTGLLAVLS 263 (783)
T ss_pred ccH---HHHHhhCCCCcccceeeEEeccCCcchhhhhc
Confidence 321 111112 234899999998765665543
No 317
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.10 E-value=0.014 Score=64.70 Aligned_cols=138 Identities=14% Similarity=0.045 Sum_probs=87.7
Q ss_pred CEEEEEeCCCeEEEEeCCCCCCCC-----CCC------CeEEEEECC--CCCeEEEEeCCCeEEEEECCCCeEEEEEccC
Q 004217 82 RGLASWVEAESLHHLRPKYCPLSP-----PPR------STIAAAFSP--DGKTLASTHGDHTVKIIDCQTGSCLKVLHGH 148 (767)
Q Consensus 82 ~~LaSgs~DgsIrlWd~~t~~L~g-----H~~------sVtsVaFSp--DG~~LASgs~DGtVrVWDl~tg~~l~~L~gH 148 (767)
..++.+..++.+..+|..++++.- ... ....+.-+| .+..++.++.++.++.||.++|+.+.....
T Consensus 191 ~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~- 269 (377)
T TIGR03300 191 GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDA- 269 (377)
T ss_pred CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeecc-
Confidence 356677778888888887764210 000 001111112 356788888899999999999988776642
Q ss_pred CCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec-CCC-CeEEEEEcCCCCEEEEEECC-cEEEEEcCCCccc
Q 004217 149 RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYR-PIASIAFHASGELLAVASGH-KLYIWRYNMREET 225 (767)
Q Consensus 149 ~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~-h~~-~VtsVafSPdG~~LAsgSdd-~V~VWDl~t~~~~ 225 (767)
........ .++.++.++.||.+..+|..+++.+.... ... ...+... .+..|++++.+ .|+++|..+++.+
T Consensus 270 -~~~~~p~~---~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~ 343 (377)
T TIGR03300 270 -SSYQGPAV---DDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFV 343 (377)
T ss_pred -CCccCceE---eCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEE
Confidence 11222222 34667777899999999999998876652 222 2222222 35677777754 4999999998875
Q ss_pred c
Q 004217 226 S 226 (767)
Q Consensus 226 ~ 226 (767)
.
T Consensus 344 ~ 344 (377)
T TIGR03300 344 A 344 (377)
T ss_pred E
Confidence 5
No 318
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.07 E-value=0.0016 Score=76.15 Aligned_cols=164 Identities=16% Similarity=0.211 Sum_probs=111.1
Q ss_pred CCEEEEEeCCCeEEEEeCCCC-------CCCCCCCCeEEEEECC-CCCeEEEEeCCCeEEEEECCCCe-EEEEEccCCCC
Q 004217 81 RRGLASWVEAESLHHLRPKYC-------PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGS-CLKVLHGHRRT 151 (767)
Q Consensus 81 g~~LaSgs~DgsIrlWd~~t~-------~L~gH~~sVtsVaFSp-DG~~LASgs~DGtVrVWDl~tg~-~l~~L~gH~~~ 151 (767)
...+++++.-+ -.+|++... -+.+|.+.|+++.|++ ....|++++-|-.|..||+++.. .+..+..-...
T Consensus 82 ~~wiVsts~qk-aiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~ 160 (1081)
T KOG0309|consen 82 PYWIVSTSNQK-AIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSA 160 (1081)
T ss_pred ceeEEecCcch-hhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeeccccc
Confidence 34455665444 446777543 2669999999999999 56689999999999999998754 44444433445
Q ss_pred cEEEEEccCCCcEEEEEeCCCeEEEEECCCCe-EEEee-cCCCCeEEEEEcCCC-CEEEEEE-CCcEEEEEcCCCccccC
Q 004217 152 PWVVRFHPLNPTIIASGSLDHEVRLWNASTAE-CIGSR-DFYRPIASIAFHASG-ELLAVAS-GHKLYIWRYNMREETSS 227 (767)
Q Consensus 152 V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~-~i~~l-~h~~~VtsVafSPdG-~~LAsgS-dd~V~VWDl~t~~~~~~ 227 (767)
-..+.|+-.+++.+++ +..+.|++||++.|. .+..+ +|...|+.++|..-- ..+.+.+ ++.|++||........
T Consensus 161 asqVkwnyk~p~vlas-shg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~- 238 (1081)
T KOG0309|consen 161 ASQVKWNYKDPNVLAS-SHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTES- 238 (1081)
T ss_pred CceeeecccCcchhhh-ccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccccccc-
Confidence 6779999867777766 566789999999765 33333 467778888876532 2344444 5559999997665422
Q ss_pred CeEEecCCCCeEEEEEccCCC
Q 004217 228 PRIVLRTRRSLRAVHFHPHAA 248 (767)
Q Consensus 228 ~~~l~~h~~~VtsVaFSPDG~ 248 (767)
........+|..-.|-|-|+
T Consensus 239 -~~~vtt~~piw~~r~~Pfg~ 258 (1081)
T KOG0309|consen 239 -KRTVTTNFPIWRGRYLPFGE 258 (1081)
T ss_pred -ceeccccCcceeccccccCc
Confidence 22333455666666666554
No 319
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=96.99 E-value=0.0092 Score=66.24 Aligned_cols=131 Identities=15% Similarity=0.054 Sum_probs=83.1
Q ss_pred CCEEEEEeCCCeEEEEeCCCCCCCC-C-CCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCC-CcEEEEE
Q 004217 81 RRGLASWVEAESLHHLRPKYCPLSP-P-PRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRR-TPWVVRF 157 (767)
Q Consensus 81 g~~LaSgs~DgsIrlWd~~t~~L~g-H-~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~-~V~sLaf 157 (767)
+..++..+.++.+..||.+++++.- . ........ .++..|+.++.||.|..+|..+|+.+........ .......
T Consensus 241 ~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i 318 (377)
T TIGR03300 241 GGQVYAVSYQGRVAALDLRSGRVLWKRDASSYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV 318 (377)
T ss_pred CCEEEEEEcCCEEEEEECCCCcEEEeeccCCccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE
Confidence 4567777788999999998774221 0 11111112 2567888888999999999999988766532222 2222222
Q ss_pred ccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCCC-CeE-EEEEcCCCCEEEEEECCcEEEE
Q 004217 158 HPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYR-PIA-SIAFHASGELLAVASGHKLYIW 217 (767)
Q Consensus 158 sP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~-~Vt-sVafSPdG~~LAsgSdd~V~VW 217 (767)
.++.++.++.||.|.++|..+++.+..+.... .+. +..+. ++++++.+.++.|+.|
T Consensus 319 ---~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 319 ---VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVV-GDGLLVQTRDGDLYAF 376 (377)
T ss_pred ---ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEE-CCEEEEEeCCceEEEe
Confidence 34678889999999999999999998876333 332 22332 4444444445557654
No 320
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.83 E-value=0.0034 Score=42.93 Aligned_cols=39 Identities=38% Similarity=0.641 Sum_probs=34.5
Q ss_pred CeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEE
Q 004217 139 GSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWN 178 (767)
Q Consensus 139 g~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWD 178 (767)
++++..+..|...|.++.|++ +.+++++++.|+.+++||
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSP-DGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECC-CCCEEEEecCCCeEEEcC
Confidence 456677788999999999999 779999999999999996
No 321
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.81 E-value=0.042 Score=56.18 Aligned_cols=141 Identities=18% Similarity=0.076 Sum_probs=88.3
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCCCC-----CC---CCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCC
Q 004217 80 ARRGLASWVEAESLHHLRPKYCPLS-----PP---PRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRT 151 (767)
Q Consensus 80 ~g~~LaSgs~DgsIrlWd~~t~~L~-----gH---~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~ 151 (767)
.+..++....++.|..+|..++++. .. ...........++..++.+..++.|..+|.++|+.+..+......
T Consensus 75 ~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~ 154 (238)
T PF13360_consen 75 DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPR 154 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-
T ss_pred cccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCC
Confidence 4444555557778888887776321 11 011222333334788888888999999999999998888664422
Q ss_pred c-----------EEEEEccCCCcEEEEEeCCCe-EEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEE-CCcEEEEE
Q 004217 152 P-----------WVVRFHPLNPTIIASGSLDHE-VRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS-GHKLYIWR 218 (767)
Q Consensus 152 V-----------~sLafsP~dg~lLaSgS~DGt-VrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgS-dd~V~VWD 218 (767)
. ..+.+. ++ .++.+..++. +.+ |+.+++.+.... ...+..+ ...++..|++++ ++.|.+||
T Consensus 155 ~~~~~~~~~~~~~~~~~~--~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~-~~~~~~~-~~~~~~~l~~~~~~~~l~~~d 228 (238)
T PF13360_consen 155 GSSPISSFSDINGSPVIS--DG-RVYVSSGDGRVVAV-DLATGEKLWSKP-ISGIYSL-PSVDGGTLYVTSSDGRLYALD 228 (238)
T ss_dssp SS--EEEETTEEEEEECC--TT-EEEEECCTSSEEEE-ETTTTEEEEEEC-SS-ECEC-EECCCTEEEEEETTTEEEEEE
T ss_pred CCcceeeecccccceEEE--CC-EEEEEcCCCeEEEE-ECCCCCEEEEec-CCCccCC-ceeeCCEEEEEeCCCEEEEEE
Confidence 1 222222 33 6666666775 555 999999765443 3333331 456777777777 55599999
Q ss_pred cCCCcccc
Q 004217 219 YNMREETS 226 (767)
Q Consensus 219 l~t~~~~~ 226 (767)
+++++...
T Consensus 229 ~~tG~~~W 236 (238)
T PF13360_consen 229 LKTGKVVW 236 (238)
T ss_dssp TTTTEEEE
T ss_pred CCCCCEEe
Confidence 99998643
No 322
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.73 E-value=0.023 Score=58.11 Aligned_cols=106 Identities=18% Similarity=0.080 Sum_probs=73.3
Q ss_pred CCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEee-cCC----C
Q 004217 118 DGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFY----R 192 (767)
Q Consensus 118 DG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l-~h~----~ 192 (767)
++.++++++.++.|..||..+|+.+..+.. ...+...-.. .+..++.+..|+.+..+|..+|+.+... ... .
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~~--~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~ 111 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPVV--DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAG 111 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEEE--ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCS
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceeee--cccccccccceeeeEecccCCcceeeeeccccccccc
Confidence 567788888999999999999998887765 3332221122 3455666668889999999999998873 311 1
Q ss_pred CeEEEEEcCCCCEEEEEE-CCcEEEEEcCCCcccc
Q 004217 193 PIASIAFHASGELLAVAS-GHKLYIWRYNMREETS 226 (767)
Q Consensus 193 ~VtsVafSPdG~~LAsgS-dd~V~VWDl~t~~~~~ 226 (767)
.........++..++++. ++.|..+|+++++.+.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w 146 (238)
T PF13360_consen 112 VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLW 146 (238)
T ss_dssp TB--SEEEEETTEEEEEETCSEEEEEETTTTEEEE
T ss_pred cccccCceEecCEEEEEeccCcEEEEecCCCcEEE
Confidence 122233333477777777 5669999999998765
No 323
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.65 E-value=0.0028 Score=70.78 Aligned_cols=79 Identities=11% Similarity=0.102 Sum_probs=62.0
Q ss_pred cCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCC------CeEEEee----------cCCCCeEEEEEcCCCCEEEEEE
Q 004217 147 GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST------AECIGSR----------DFYRPIASIAFHASGELLAVAS 210 (767)
Q Consensus 147 gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~t------g~~i~~l----------~h~~~VtsVafSPdG~~LAsgS 210 (767)
-|..+|..+.+.+ -++.++|....|.|.-|.... .+....+ +......++.|+|+|..+.+-+
T Consensus 142 lH~sPV~~i~y~q-a~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~ 220 (558)
T KOG0882|consen 142 LHFSPVKKIRYNQ-AGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLN 220 (558)
T ss_pred cccCceEEEEeec-cccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccC
Confidence 4888999999999 888999999999999998773 1111112 2345678999999999999888
Q ss_pred CCc-EEEEEcCCCcccc
Q 004217 211 GHK-LYIWRYNMREETS 226 (767)
Q Consensus 211 dd~-V~VWDl~t~~~~~ 226 (767)
.+. |+++++++++..+
T Consensus 221 ~DrkVR~F~~KtGklvq 237 (558)
T KOG0882|consen 221 PDRKVRGFVFKTGKLVQ 237 (558)
T ss_pred cccEEEEEEeccchhhh
Confidence 766 9999999987533
No 324
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.64 E-value=0.023 Score=69.08 Aligned_cols=132 Identities=11% Similarity=0.130 Sum_probs=92.6
Q ss_pred CCCeEEEE-eCCCeEEEEECCCCeEEEEEccCCCC-cEEEEEccC------CCcEEEEEeCCCeEEEEECCCCe--EEEe
Q 004217 118 DGKTLAST-HGDHTVKIIDCQTGSCLKVLHGHRRT-PWVVRFHPL------NPTIIASGSLDHEVRLWNASTAE--CIGS 187 (767)
Q Consensus 118 DG~~LASg-s~DGtVrVWDl~tg~~l~~L~gH~~~-V~sLafsP~------dg~lLaSgS~DGtVrIWDl~tg~--~i~~ 187 (767)
|.+.|+.- .....|+-.|++.|+.+..++.|... |. .+.|. +..-.+.|-.++.+..||.|-.. ++..
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~--~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~ 569 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVV--DIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDS 569 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCccee--EecccccccccCCCceEEEECCCceEEeccCCCCCceeec
Confidence 33444433 34578999999999999999887754 44 44451 23456677888999999998532 3322
Q ss_pred ----ecCCCCeEEEEEcCCCCEEEEEECC-cEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217 188 ----RDFYRPIASIAFHASGELLAVASGH-KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (767)
Q Consensus 188 ----l~h~~~VtsVafSPdG~~LAsgSdd-~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs 255 (767)
+.......|++-+.+| +||+|+.+ .|++||- .++. ....+.+-..+|..|..+.||+|+|+||.
T Consensus 570 ~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~--AKT~lp~lG~pI~~iDvt~DGkwilaTc~ 638 (794)
T PF08553_consen 570 QSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKR--AKTALPGLGDPIIGIDVTADGKWILATCK 638 (794)
T ss_pred cccccccCCCceEEEecCCc-eEEEEeCCCcEEeecc-cchh--hhhcCCCCCCCeeEEEecCCCcEEEEeec
Confidence 2345567788877777 66677755 4999993 3332 23445566899999999999999999998
No 325
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=96.58 E-value=0.16 Score=60.44 Aligned_cols=139 Identities=11% Similarity=0.112 Sum_probs=101.2
Q ss_pred CCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCC------------CeEEEEeCCCeEEEEECCCCeEEE
Q 004217 80 ARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDG------------KTLASTHGDHTVKIIDCQTGSCLK 143 (767)
Q Consensus 80 ~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG------------~~LASgs~DGtVrVWDl~tg~~l~ 143 (767)
.++.++-|+ -..|.+-|..+- .+.-|...|+.+.|.|-. -+||++...|.|.|||+..+..+.
T Consensus 25 ~~GLiAygs-hslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~ 103 (1062)
T KOG1912|consen 25 PSGLIAYGS-HSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVIN 103 (1062)
T ss_pred ccceEEEec-CceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhh
Confidence 344444443 445666676543 355788999999998721 156778888999999999999888
Q ss_pred EEccCCCCcEEEEEccC--CC-cEEEEEeCCCeEEEEECCCCeEEEeecCCC-CeEEEEEcCCC-C-EEEEEECCcEEEE
Q 004217 144 VLHGHRRTPWVVRFHPL--NP-TIIASGSLDHEVRLWNASTAECIGSRDFYR-PIASIAFHASG-E-LLAVASGHKLYIW 217 (767)
Q Consensus 144 ~L~gH~~~V~sLafsP~--dg-~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~-~VtsVafSPdG-~-~LAsgSdd~V~VW 217 (767)
.+..|.+.+..++|-+. +. ++|+.-....++.+|+..+|+.+....... ...|+.++|-. + +.+.++.+.+.+-
T Consensus 104 ~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~ 183 (1062)
T KOG1912|consen 104 WLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSC 183 (1062)
T ss_pred hhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEE
Confidence 89999999999999762 23 577777888999999999999998876444 44568888843 4 4445555656655
Q ss_pred Ec
Q 004217 218 RY 219 (767)
Q Consensus 218 Dl 219 (767)
+.
T Consensus 184 ~~ 185 (1062)
T KOG1912|consen 184 KD 185 (1062)
T ss_pred ec
Confidence 54
No 326
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.51 E-value=0.012 Score=68.38 Aligned_cols=93 Identities=14% Similarity=0.121 Sum_probs=80.9
Q ss_pred CCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcE-EEEEccCCCcEEEEEeCCCeEEEEECCCCeEE
Q 004217 107 PRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPW-VVRFHPLNPTIIASGSLDHEVRLWNASTAECI 185 (767)
Q Consensus 107 ~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~-sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i 185 (767)
...|.-+.|+|.-.+||.+..+|.|.+..+. .+.+.++.-|...++ +++|.| |+++++.|-.||+|++.|+.++..+
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecC-CCCEEEEEecCCeEEEEEccCCCce
Confidence 4468889999999999999999999999988 777888887777777 999999 8999999999999999999999888
Q ss_pred Ee--ecCCCCeEEEEEcC
Q 004217 186 GS--RDFYRPIASIAFHA 201 (767)
Q Consensus 186 ~~--l~h~~~VtsVafSP 201 (767)
.. +--...|.++-|++
T Consensus 98 ~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWDR 115 (665)
T ss_pred eccccccccchheeeccc
Confidence 77 44567788888873
No 327
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=96.27 E-value=0.081 Score=58.71 Aligned_cols=171 Identities=16% Similarity=0.216 Sum_probs=94.6
Q ss_pred CCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEECCcEEEEEcCCCccccCCeEEec-------C---------
Q 004217 171 DHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLR-------T--------- 234 (767)
Q Consensus 171 DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSdd~V~VWDl~t~~~~~~~~~l~~-------h--------- 234 (767)
.+.+.|||+.+++..........+....|+|+|+.++...++.|++++..++...+ . ...+ -
T Consensus 22 ~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~~~~-l-T~dg~~~i~nG~~dwvyeEEv 99 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQETQ-L-TTDGEPGIYNGVPDWVYEEEV 99 (353)
T ss_dssp EEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEETTEEEEESSTTSEEEE-S-ES--TTTEEESB--HHHHHHT
T ss_pred ceeEEEEecCCCceEECcCCccccccceeecCCCeeEEEecCceEEEECCCCCeEE-e-ccccceeEEcCccceeccccc
Confidence 46799999999887766555678889999999999999999999999987775433 1 1111 0
Q ss_pred CCCeEEEEEccCCCeEEEEEeeC-Cc--------CCCCc--c---eeEeecCCCccCCCCeEEE--ecCCCCCCCceeec
Q 004217 235 RRSLRAVHFHPHAAPLLLTAEVN-DL--------DSSES--S---LTLATSPGYWRYPPPVICM--AGAHSSSHPGLAEE 298 (767)
Q Consensus 235 ~~~VtsVaFSPDG~~LlaSgsvw-dl--------~s~~~--~---~~l~t~sG~~~~p~~~v~l--~~~~Ssd~~~L~sg 298 (767)
-+.-..+-|||||++|+...-.. .+ ..... + .......|- +.+.+.+ .+..++....+...
T Consensus 100 ~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~---~np~v~l~v~~~~~~~~~~~~~~ 176 (353)
T PF00930_consen 100 FDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGD---PNPRVSLFVVDLASGKTTELDPP 176 (353)
T ss_dssp SSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS------EEEEEEEESSSTCCCEE---
T ss_pred cccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCC---cCCceEEEEEECCCCcEEEeeec
Confidence 12235788999999887654311 11 11100 0 000111222 1233443 44433332211111
Q ss_pred c-CCCCCCce-eeEEecCCCEEEEeecCCCCCCcccccccccCCceeeeeccCCCCceeeee
Q 004217 299 V-PLITPPFL-RPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQYELVL 358 (767)
Q Consensus 299 ~-~~~slpil-~psFSpDg~rIva~~~~~d~Gs~~~~~~~~ss~~~~l~~~~~~~~q~~~~~ 358 (767)
. ....-..+ .+.|++|+.++++.+.+.+ .....+...|..++.....+
T Consensus 177 ~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~------------q~~~~l~~~d~~tg~~~~~~ 226 (353)
T PF00930_consen 177 NSLNPQDYYLTRVGWSPDGKRLWVQWLNRD------------QNRLDLVLCDASTGETRVVL 226 (353)
T ss_dssp HHHHTSSEEEEEEEEEETTEEEEEEEEETT------------STEEEEEEEEECTTTCEEEE
T ss_pred cccCCCccCcccceecCCCcEEEEEEcccC------------CCEEEEEEEECCCCceeEEE
Confidence 0 01112233 7999999997887555443 34445666777776666555
No 328
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.27 E-value=0.021 Score=67.11 Aligned_cols=138 Identities=12% Similarity=0.143 Sum_probs=96.4
Q ss_pred CCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEE-EEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeE
Q 004217 106 PPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLK-VLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC 184 (767)
Q Consensus 106 H~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~-~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~ 184 (767)
|+..|.--+++..+++|+.|+.-|.|++|+-..+.... ...+-.+.+..+..++ +..+++.|+..|.|.++.+.....
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~-~e~lvAagt~~g~V~v~ql~~~~p 110 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSS-VEYLVAAGTASGRVSVFQLNKELP 110 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecc-hhHhhhhhcCCceEEeehhhccCC
Confidence 44456666677789999999999999999977766432 2233445566677888 888999999999999998876332
Q ss_pred EE---e----ecCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCC-ccccCCeEEecCCCCeEEEEEc
Q 004217 185 IG---S----RDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMR-EETSSPRIVLRTRRSLRAVHFH 244 (767)
Q Consensus 185 i~---~----l~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~-~~~~~~~~l~~h~~~VtsVaFS 244 (767)
-. . ..|...|++++|++++..|++|.+.+ |..-.+... ........+..-.+.|-.+...
T Consensus 111 ~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~ 179 (726)
T KOG3621|consen 111 RDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL 179 (726)
T ss_pred CcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc
Confidence 11 1 12678999999999999999998644 766666652 1112223344445667666654
No 329
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.26 E-value=0.085 Score=62.43 Aligned_cols=100 Identities=17% Similarity=0.285 Sum_probs=68.2
Q ss_pred CCCeEEEEeCCCeEEEEECCC----C-eEEEEEccCCCCcEEEEEccCCCcEE-EEEeCCCeEEEEECCCCeE-------
Q 004217 118 DGKTLASTHGDHTVKIIDCQT----G-SCLKVLHGHRRTPWVVRFHPLNPTII-ASGSLDHEVRLWNASTAEC------- 184 (767)
Q Consensus 118 DG~~LASgs~DGtVrVWDl~t----g-~~l~~L~gH~~~V~sLafsP~dg~lL-aSgS~DGtVrIWDl~tg~~------- 184 (767)
+|++... .+++|.+.|..+ + +.+..+. -......+.++| |++++ +++..+.+|.+.|+.+.+.
T Consensus 287 dGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSP-DGkylyVanklS~tVSVIDv~k~k~~~~~~~~ 362 (635)
T PRK02888 287 AGKFKTI--GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSP-DGKYFIANGKLSPTVTVIDVRKLDDLFDGKIK 362 (635)
T ss_pred CCCEEEE--CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECC-CCCEEEEeCCCCCcEEEEEChhhhhhhhccCC
Confidence 5555444 356799999887 3 4444443 456688999999 66655 5555699999999988553
Q ss_pred -----EEeecCCCCeEEEEEcCCCCEEEEEE-CCcEEEEEcCC
Q 004217 185 -----IGSRDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNM 221 (767)
Q Consensus 185 -----i~~l~h~~~VtsVafSPdG~~LAsgS-dd~V~VWDl~t 221 (767)
+....-.......+|+++|+...+-. +..|..||+.+
T Consensus 363 ~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 363 PRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred ccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 33333334445678999998655555 44599999876
No 330
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.20 E-value=0.59 Score=52.65 Aligned_cols=145 Identities=14% Similarity=0.192 Sum_probs=100.3
Q ss_pred eEEEEECCCCCeE-EEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEe--CCCeEEEEECCCCeEEE
Q 004217 110 TIAAAFSPDGKTL-ASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGS--LDHEVRLWNASTAECIG 186 (767)
Q Consensus 110 VtsVaFSpDG~~L-ASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS--~DGtVrIWDl~tg~~i~ 186 (767)
-..++++++++.+ +....+..|.+.|..+.+.+....-- .....++++|++..+.++-. .++++.+.|..+.+.+.
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG-~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~ 154 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVG-LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTA 154 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeec-cCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEE
Confidence 4578889988854 45555689999998887766655322 26678999994445555555 37999999999999888
Q ss_pred eecCCCCeEEEEEcCCCCEEEEEE--CCcEEEEEcCCCcccc-CCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217 187 SRDFYRPIASIAFHASGELLAVAS--GHKLYIWRYNMREETS-SPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (767)
Q Consensus 187 ~l~h~~~VtsVafSPdG~~LAsgS--dd~V~VWDl~t~~~~~-~~~~l~~h~~~VtsVaFSPDG~~LlaSgs 255 (767)
...-...-..++++|+|+.+.+.. ++.|.+.|........ .......-...-..+.++|+|+++.++..
T Consensus 155 ~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~ 226 (381)
T COG3391 155 TIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVAND 226 (381)
T ss_pred EEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEec
Confidence 854333338899999999877776 4559999976665431 11111222344568999999997766544
No 331
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.16 E-value=0.45 Score=56.51 Aligned_cols=146 Identities=8% Similarity=-0.025 Sum_probs=94.8
Q ss_pred EEECCCCCeEEEE-eCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEe----------------------
Q 004217 113 AAFSPDGKTLAST-HGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGS---------------------- 169 (767)
Q Consensus 113 VaFSpDG~~LASg-s~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS---------------------- 169 (767)
+=+++||+.+... -..+.+.+.|.++.+...++.-- +....++++| +++++++.+
T Consensus 198 ~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vd-gnpd~v~~sp-dGk~afvTsyNsE~G~tl~em~a~e~d~~vv 275 (635)
T PRK02888 198 IPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVD-GNLDNVDTDY-DGKYAFSTCYNSEEGVTLAEMMAAERDWVVV 275 (635)
T ss_pred cccCCCCCEeecccceeEEEEEEECccceEEEEEEeC-CCcccceECC-CCCEEEEeccCcccCcceeeeccccCceEEE
Confidence 3456678766433 23567888898888776666432 2445677888 666666554
Q ss_pred ------------------CCCeEEEEECCC-----CeEEEeecCCCCeEEEEEcCCCCEEEEEE--CCcEEEEEcCCCcc
Q 004217 170 ------------------LDHEVRLWNAST-----AECIGSRDFYRPIASIAFHASGELLAVAS--GHKLYIWRYNMREE 224 (767)
Q Consensus 170 ------------------~DGtVrIWDl~t-----g~~i~~l~h~~~VtsVafSPdG~~LAsgS--dd~V~VWDl~t~~~ 224 (767)
.+++|.+.|.++ .+.+..+.-......++++|||+++++++ ++.|.|+|+.+.+.
T Consensus 276 fni~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~ 355 (635)
T PRK02888 276 FNIARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDD 355 (635)
T ss_pred EchHHHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhh
Confidence 235688888887 45666677777888999999999999888 45599999987653
Q ss_pred cc-----CCeE---EecCCCCeEEEEEccCCCeEEEEEe------eCCcCC
Q 004217 225 TS-----SPRI---VLRTRRSLRAVHFHPHAAPLLLTAE------VNDLDS 261 (767)
Q Consensus 225 ~~-----~~~~---l~~h~~~VtsVaFSPDG~~LlaSgs------vwdl~s 261 (767)
.- .... ...-...-...+|.++|. ..++-- .|++..
T Consensus 356 ~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~-aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 356 LFDGKIKPRDAVVAEPELGLGPLHTAFDGRGN-AYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred hhhccCCccceEEEeeccCCCcceEEECCCCC-EEEeEeecceeEEEehHH
Confidence 10 0000 111133445788999987 444332 677664
No 332
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.15 E-value=0.095 Score=62.41 Aligned_cols=139 Identities=15% Similarity=0.166 Sum_probs=84.1
Q ss_pred CCCCeEEEEECCCCCeEEEEe------CCC--eEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCC------
Q 004217 106 PPRSTIAAAFSPDGKTLASTH------GDH--TVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLD------ 171 (767)
Q Consensus 106 H~~sVtsVaFSpDG~~LASgs------~DG--tVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~D------ 171 (767)
....+...++||||+.++..- .|. .|.+++.. +.....+.+. ....-.|+| +++.+++....
T Consensus 348 ~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g~--~~t~PsWsp-DG~~lw~v~dg~~~~~v 423 (591)
T PRK13616 348 QMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEGH--SLTRPSWSL-DADAVWVVVDGNTVVRV 423 (591)
T ss_pred cccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecCC--CCCCceECC-CCCceEEEecCcceEEE
Confidence 334688999999999987765 243 45555642 3332223333 377889999 76666665422
Q ss_pred ------CeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEECCcEEE---EEcCCCc-cccCCeEEec-CCCCeEE
Q 004217 172 ------HEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYI---WRYNMRE-ETSSPRIVLR-TRRSLRA 240 (767)
Q Consensus 172 ------GtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSdd~V~V---WDl~t~~-~~~~~~~l~~-h~~~Vts 240 (767)
+.+.+.++..++... .....|..+.|||||..|+...+++|++ -....+. .+..+..+.. -...+.+
T Consensus 424 ~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~ 501 (591)
T PRK13616 424 IRDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVS 501 (591)
T ss_pred eccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCceeecccEEeecccCCcccc
Confidence 233333444443322 3456799999999999988887777666 3333332 1111222222 2334688
Q ss_pred EEEccCCCeE
Q 004217 241 VHFHPHAAPL 250 (767)
Q Consensus 241 VaFSPDG~~L 250 (767)
+.|..++..+
T Consensus 502 l~W~~~~~L~ 511 (591)
T PRK13616 502 LDWRTGDSLV 511 (591)
T ss_pred ceEecCCEEE
Confidence 9999999844
No 333
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.14 E-value=0.25 Score=59.46 Aligned_cols=134 Identities=9% Similarity=0.162 Sum_probs=91.6
Q ss_pred EECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCe-----EEEEECCC------C
Q 004217 114 AFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHE-----VRLWNAST------A 182 (767)
Q Consensus 114 aFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGt-----VrIWDl~t------g 182 (767)
+|++.+..++.|+.||.|.+.+ ..-+.++.|+.+...+...-|.-.+.++|++.+.|+. |+|||+.. .
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP 108 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP 108 (933)
T ss_pred EEcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence 4677788999999999888887 3345557788777773333344425578888877754 99999864 2
Q ss_pred eEE---Eeec-----CCCCeEEEEEcCCCCEEEEEECCc-EEEEEcC--CCccccCCeEEecCCCCeEEEEEccCCCe
Q 004217 183 ECI---GSRD-----FYRPIASIAFHASGELLAVASGHK-LYIWRYN--MREETSSPRIVLRTRRSLRAVHFHPHAAP 249 (767)
Q Consensus 183 ~~i---~~l~-----h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~--t~~~~~~~~~l~~h~~~VtsVaFSPDG~~ 249 (767)
+++ +.+. ...++.+++.+.+-+.+|+|-.++ |..+.=+ ..... +.......+.+|+.+.|..|++.
T Consensus 109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgs-r~~~~~~~~~pITgL~~~~d~~s 185 (933)
T KOG2114|consen 109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGS-RQDYSHRGKEPITGLALRSDGKS 185 (933)
T ss_pred ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhcccc-ceeeeccCCCCceeeEEecCCce
Confidence 344 2222 346788999999989999998777 6666322 11111 12233345789999999999987
No 334
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.11 E-value=0.65 Score=52.33 Aligned_cols=176 Identities=17% Similarity=0.174 Sum_probs=118.1
Q ss_pred EEEEEcCCCEEE-EEeCCCeEEEEeCCCCCCC---CCCCCeEEEEECCCCCeEEEEeC---CCeEEEEECCCCeEEEEEc
Q 004217 74 FEAGRDARRGLA-SWVEAESLHHLRPKYCPLS---PPPRSTIAAAFSPDGKTLASTHG---DHTVKIIDCQTGSCLKVLH 146 (767)
Q Consensus 74 ~vA~sd~g~~La-Sgs~DgsIrlWd~~t~~L~---gH~~sVtsVaFSpDG~~LASgs~---DGtVrVWDl~tg~~l~~L~ 146 (767)
-++....+..++ ....++.|.+.|..+.+.. .-......++|+++++.+..+.. ++++.+.|..+++.+....
T Consensus 78 ~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~ 157 (381)
T COG3391 78 GVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIP 157 (381)
T ss_pred ceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEe
Confidence 344545555444 4445688999986654211 11226778999999988877655 6899999999998887754
Q ss_pred cCCCCcEEEEEccCCCc-EEEEEeCCCeEEEEECCCCeEEE-e----ecCCCCeEEEEEcCCCCEEEEEECC----cEEE
Q 004217 147 GHRRTPWVVRFHPLNPT-IIASGSLDHEVRLWNASTAECIG-S----RDFYRPIASIAFHASGELLAVASGH----KLYI 216 (767)
Q Consensus 147 gH~~~V~sLafsP~dg~-lLaSgS~DGtVrIWDl~tg~~i~-~----l~h~~~VtsVafSPdG~~LAsgSdd----~V~V 216 (767)
.-..+ ..+++.| +++ .+++-..++.|.+.|........ . .........+.++|+|.++.+...+ .+.+
T Consensus 158 vG~~P-~~~a~~p-~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~ 235 (381)
T COG3391 158 VGNTP-TGVAVDP-DGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLK 235 (381)
T ss_pred cCCCc-ceEEECC-CCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEE
Confidence 33333 8899999 666 55555689999999987766663 1 2333445678999999977666532 4888
Q ss_pred EEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEE
Q 004217 217 WRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLT 253 (767)
Q Consensus 217 WDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaS 253 (767)
.|..++...... ...+.. ....+.++|+|+++...
T Consensus 236 id~~~~~v~~~~-~~~~~~-~~~~v~~~p~g~~~yv~ 270 (381)
T COG3391 236 IDTATGNVTATD-LPVGSG-APRGVAVDPAGKAAYVA 270 (381)
T ss_pred EeCCCceEEEec-cccccC-CCCceeECCCCCEEEEE
Confidence 888877654410 111122 45678999999976665
No 335
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.03 E-value=0.0095 Score=40.63 Aligned_cols=32 Identities=44% Similarity=0.586 Sum_probs=29.2
Q ss_pred CCCCCCeEEEEECCCCCeEEEEeCCCeEEEEE
Q 004217 104 SPPPRSTIAAAFSPDGKTLASTHGDHTVKIID 135 (767)
Q Consensus 104 ~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWD 135 (767)
..|...|.++.|+++++++++++.|+.+++||
T Consensus 9 ~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 9 KGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 35788899999999999999999999999996
No 336
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.99 E-value=0.12 Score=59.56 Aligned_cols=131 Identities=12% Similarity=0.144 Sum_probs=75.1
Q ss_pred CeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEee
Q 004217 109 STIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR 188 (767)
Q Consensus 109 sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l 188 (767)
....+.++|+|+.++. +.||.-.|+.....+.... +.-....|.+ .+ .++.-....+|.|+.--+.+..+.+
T Consensus 34 ~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~~-----G~g~~~vw~~-~n-~yAv~~~~~~I~I~kn~~~~~~k~i 105 (443)
T PF04053_consen 34 YPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKAF-----GSGLSFVWSS-RN-RYAVLESSSTIKIYKNFKNEVVKSI 105 (443)
T ss_dssp --SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEEE-----EE-SEEEE-T-SS-EEEEE-TTS-EEEEETTEE-TT---
T ss_pred CCeeEEECCCCCEEEE-EcCCEEEEEEccCCccccc-----CceeEEEEec-Cc-cEEEEECCCeEEEEEcCccccceEE
Confidence 4678999999999888 4567888887544443222 2234678888 44 4666666888999733232322344
Q ss_pred cCCCCeEEEEEcCCCCEEEEEECCcEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217 189 DFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (767)
Q Consensus 189 ~h~~~VtsVafSPdG~~LAsgSdd~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs 255 (767)
.....+..+-. |.+|...+++.|.+||+.+++.+. .+. . ..|..|.|+++|.+++..++
T Consensus 106 ~~~~~~~~If~---G~LL~~~~~~~i~~yDw~~~~~i~---~i~-v-~~vk~V~Ws~~g~~val~t~ 164 (443)
T PF04053_consen 106 KLPFSVEKIFG---GNLLGVKSSDFICFYDWETGKLIR---RID-V-SAVKYVIWSDDGELVALVTK 164 (443)
T ss_dssp --SS-EEEEE----SSSEEEEETTEEEEE-TTT--EEE---EES-S--E-EEEEE-TTSSEEEEE-S
T ss_pred cCCcccceEEc---CcEEEEECCCCEEEEEhhHcceee---EEe-c-CCCcEEEEECCCCEEEEEeC
Confidence 43344444433 888888888889999999987655 222 2 24899999999998887765
No 337
>PF08953 DUF1899: Domain of unknown function (DUF1899); InterPro: IPR015048 This set of proteins are found in various eukaryotic proteins. The function is unknown. ; PDB: 2B4E_A 2AQ5_A.
Probab=95.97 E-value=0.0068 Score=51.32 Aligned_cols=41 Identities=24% Similarity=0.280 Sum_probs=22.6
Q ss_pred CCCCCcceecccccccccCCCccCcceeecccccceecCCc
Q 004217 30 HRNSRLRNVFGLLAQREVAPRTKHSSKRLLGETARKCSGSF 70 (767)
Q Consensus 30 ~r~sk~rnVf~~~~kre~~~~~~~~sk~~wd~~~~~~~~s~ 70 (767)
.|.|||||||+...++|.++.+.++....||.+.+.++..+
T Consensus 3 vR~SKfRhv~g~~~kke~~y~~i~vs~~~~d~n~i~~N~kf 43 (65)
T PF08953_consen 3 VRSSKFRHVFGKPAKKEECYDNIRVSTSSWDSNFIAANPKF 43 (65)
T ss_dssp ----TTTT-EEEE--GGGSEES--B-----SS-CEEE-SSE
T ss_pred ccccccccccCccCCccccCcCEEEeCccccCCeEEEcCCE
Confidence 68999999999999999999999999999999988888444
No 338
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=95.93 E-value=0.4 Score=44.96 Aligned_cols=96 Identities=15% Similarity=0.116 Sum_probs=64.6
Q ss_pred eEEEEECC-CC---CeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEE
Q 004217 110 TIAAAFSP-DG---KTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECI 185 (767)
Q Consensus 110 VtsVaFSp-DG---~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i 185 (767)
|+++++.. |+ +.|+.|+.|..||||+- .+.+..+.. ++.|..+.-.. ...|+.+..+|+|-+|+-. +.+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e-~~~v~~L~~~~--~~~F~Y~l~NGTVGvY~~~--~Rl 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITE-TDKVTSLCSLG--GGRFAYALANGTVGVYDRS--QRL 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEec-ccceEEEEEcC--CCEEEEEecCCEEEEEeCc--cee
Confidence 56666655 33 57999999999999974 355666654 46677776655 4789999999999999753 344
Q ss_pred EeecCCCCeEEEEEc-CCC--C-EEEEEECC
Q 004217 186 GSRDFYRPIASIAFH-ASG--E-LLAVASGH 212 (767)
Q Consensus 186 ~~l~h~~~VtsVafS-PdG--~-~LAsgSdd 212 (767)
...+.+..+.++.+. .+| . -|++|-.+
T Consensus 75 WRiKSK~~~~~~~~~D~~gdG~~eLI~Gwsn 105 (111)
T PF14783_consen 75 WRIKSKNQVTSMAFYDINGDGVPELIVGWSN 105 (111)
T ss_pred eeeccCCCeEEEEEEcCCCCCceEEEEEecC
Confidence 444555556666543 333 2 56666543
No 339
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.85 E-value=0.084 Score=60.75 Aligned_cols=170 Identities=14% Similarity=0.141 Sum_probs=90.5
Q ss_pred eEEEEEEcCCCEEEEEeCCCeEEEEeCCCCCCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCC
Q 004217 72 QIFEAGRDARRGLASWVEAESLHHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRT 151 (767)
Q Consensus 72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~ 151 (767)
+..+..+++++.++. ..++...++.....+- ...+.-....|..+++ +|+-..+.+|+|+.--+.+....++-. ..
T Consensus 35 p~~ls~npngr~v~V-~g~geY~iyt~~~~r~-k~~G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~~~k~i~~~-~~ 110 (443)
T PF04053_consen 35 PQSLSHNPNGRFVLV-CGDGEYEIYTALAWRN-KAFGSGLSFVWSSRNR-YAVLESSSTIKIYKNFKNEVVKSIKLP-FS 110 (443)
T ss_dssp -SEEEE-TTSSEEEE-EETTEEEEEETTTTEE-EEEEE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE-TT-----S-S-
T ss_pred CeeEEECCCCCEEEE-EcCCEEEEEEccCCcc-cccCceeEEEEecCcc-EEEEECCCeEEEEEcCccccceEEcCC-cc
Confidence 444555667777766 5577777777432211 1234456788998554 666666889999632222222233321 22
Q ss_pred cEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEECCcEEEEEcCCC-------cc
Q 004217 152 PWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMR-------EE 224 (767)
Q Consensus 152 V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSdd~V~VWDl~t~-------~~ 224 (767)
+..|- . +.+|...+.+ .|.+||+.+++.++.+.... |..+.|+++|++++..+++.+.|++.+.. +.
T Consensus 111 ~~~If--~--G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~~g~~val~t~~~i~il~~~~~~~~~~~~~g 184 (443)
T PF04053_consen 111 VEKIF--G--GNLLGVKSSD-FICFYDWETGKLIRRIDVSA-VKYVIWSDDGELVALVTKDSIYILKYNLEAVAAIPEEG 184 (443)
T ss_dssp EEEEE-----SSSEEEEETT-EEEEE-TTT--EEEEESS-E--EEEEE-TTSSEEEEE-S-SEEEEEE-HHHHHHBTTTB
T ss_pred cceEE--c--CcEEEEECCC-CEEEEEhhHcceeeEEecCC-CcEEEEECCCCEEEEEeCCeEEEEEecchhcccccccC
Confidence 34442 2 5666665544 89999999999999988664 89999999999999999999888876544 00
Q ss_pred ccCCe-EEecCCCCeEEEEEccCCCeEEEE
Q 004217 225 TSSPR-IVLRTRRSLRAVHFHPHAAPLLLT 253 (767)
Q Consensus 225 ~~~~~-~l~~h~~~VtsVaFSPDG~~LlaS 253 (767)
..... ....-...|.+..|.-| .++.+
T Consensus 185 ~e~~f~~~~E~~~~IkSg~W~~d--~fiYt 212 (443)
T PF04053_consen 185 VEDAFELIHEISERIKSGCWVED--CFIYT 212 (443)
T ss_dssp -GGGEEEEEEE-S--SEEEEETT--EEEEE
T ss_pred chhceEEEEEecceeEEEEEEcC--EEEEE
Confidence 00011 22222678889999876 34444
No 340
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.82 E-value=0.034 Score=64.74 Aligned_cols=93 Identities=12% Similarity=0.136 Sum_probs=74.4
Q ss_pred CCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec-CCCCeE-EEEEcCCCCEEEEEECCc-EEEEEcCCCccc
Q 004217 149 RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIA-SIAFHASGELLAVASGHK-LYIWRYNMREET 225 (767)
Q Consensus 149 ~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~-h~~~Vt-sVafSPdG~~LAsgSdd~-V~VWDl~t~~~~ 225 (767)
...+.-+.|+| .-+++|.+..+|.|.+..+. .+.+.++. +...++ +++|.|||++||+|-.|+ |++.|+.++..+
T Consensus 20 ~~~i~~~ewnP-~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 20 PINIKRIEWNP-KMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred ccceEEEEEcC-ccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence 34577899999 89999999999999999888 67777776 666666 999999999999998655 999999998865
Q ss_pred cCCeEEecCCCCeEEEEEcc
Q 004217 226 SSPRIVLRTRRSLRAVHFHP 245 (767)
Q Consensus 226 ~~~~~l~~h~~~VtsVaFSP 245 (767)
.. ....-...|.++.|++
T Consensus 98 ~~--~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 98 VS--FLFSVETDISKGIWDR 115 (665)
T ss_pred ec--cccccccchheeeccc
Confidence 51 1223456778888873
No 341
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.81 E-value=0.64 Score=58.06 Aligned_cols=157 Identities=11% Similarity=0.159 Sum_probs=100.7
Q ss_pred eEEEEeCCCCCCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCC
Q 004217 92 SLHHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLD 171 (767)
Q Consensus 92 sIrlWd~~t~~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~D 171 (767)
.+++|-.....-.+. +.|.++.|--++..|+.+..+|.|.+-|.++.. +.....-...|.+++|+| |+.+++-...+
T Consensus 54 kv~~~~~s~~~~~gd-~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~-~eivg~vd~GI~aaswS~-Dee~l~liT~~ 130 (1265)
T KOG1920|consen 54 KVRLVAESFLPEDGD-DEIVSVQFLADTNSICVITALGDIILVDPETLE-LEIVGNVDNGISAASWSP-DEELLALITGR 130 (1265)
T ss_pred cccceeecccCcCCC-cceEEEEEecccceEEEEecCCcEEEEcccccc-eeeeeeccCceEEEeecC-CCcEEEEEeCC
Confidence 355554433222222 689999999999999999999999999988765 222333456799999999 99999988888
Q ss_pred CeEEEEEC----CCCeEE-----------Ee--------ec----------------------CCCCeEEEEEcCCCCEE
Q 004217 172 HEVRLWNA----STAECI-----------GS--------RD----------------------FYRPIASIAFHASGELL 206 (767)
Q Consensus 172 GtVrIWDl----~tg~~i-----------~~--------l~----------------------h~~~VtsVafSPdG~~L 206 (767)
.++.+-+- -..+.+ .. +. ..+.=++|.|--||+++
T Consensus 131 ~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~f 210 (1265)
T KOG1920|consen 131 QTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYF 210 (1265)
T ss_pred cEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEE
Confidence 87766422 111111 00 00 01112358999999999
Q ss_pred EEEE-----C-CcEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217 207 AVAS-----G-HKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (767)
Q Consensus 207 AsgS-----d-d~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs 255 (767)
|+.. + .+|+|||-+ +.... .-..-...=.+++|-|.|..+++...
T Consensus 211 AVs~~~~~~~~RkirV~drE-g~Lns---~se~~~~l~~~LsWkPsgs~iA~iq~ 261 (1265)
T KOG1920|consen 211 AVSFVESETGTRKIRVYDRE-GALNS---TSEPVEGLQHSLSWKPSGSLIAAIQC 261 (1265)
T ss_pred EEEEEeccCCceeEEEeccc-chhhc---ccCcccccccceeecCCCCeEeeeee
Confidence 9964 3 339999977 32211 11111223358999999996666543
No 342
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.70 E-value=1.3 Score=48.12 Aligned_cols=149 Identities=14% Similarity=0.236 Sum_probs=99.9
Q ss_pred CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEc--cCCCCcEEEEEccCCCcEEEEEeCCCeEEEEEC
Q 004217 102 PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH--GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNA 179 (767)
Q Consensus 102 ~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~--gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl 179 (767)
++.+-...|.++.|+|+.+.|++..+...-.||=...|+.++++. +- .....|.|.. ++.+.++--.+..+.++.+
T Consensus 80 pi~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~-~DpE~Ieyig-~n~fvi~dER~~~l~~~~v 157 (316)
T COG3204 80 PILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGF-SDPETIEYIG-GNQFVIVDERDRALYLFTV 157 (316)
T ss_pred ccccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccccc-CChhHeEEec-CCEEEEEehhcceEEEEEE
Confidence 366777779999999999999988888887777777898888763 32 2345677877 7778887778888888877
Q ss_pred CCCeEEEe-------e---cC-CCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccCCeEEecC-------CCCeEE
Q 004217 180 STAECIGS-------R---DF-YRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRT-------RRSLRA 240 (767)
Q Consensus 180 ~tg~~i~~-------l---~h-~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h-------~~~Vts 240 (767)
.....+.. + .+ +.....++|+|..+.|.++-... +.||.+......-.......+ -..|.+
T Consensus 158 d~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSg 237 (316)
T COG3204 158 DADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSG 237 (316)
T ss_pred cCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccc
Confidence 65432211 1 12 45677899999999888888766 666655533211101111111 235778
Q ss_pred EEEccCCCeEEE
Q 004217 241 VHFHPHAAPLLL 252 (767)
Q Consensus 241 VaFSPDG~~Lla 252 (767)
+.|++....+++
T Consensus 238 l~~~~~~~~LLV 249 (316)
T COG3204 238 LEFNAITNSLLV 249 (316)
T ss_pred ceecCCCCcEEE
Confidence 889976554544
No 343
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.68 E-value=0.52 Score=55.09 Aligned_cols=151 Identities=13% Similarity=0.126 Sum_probs=93.2
Q ss_pred CCCCCCCeEEEEECCC----CCeEEEEeCCCeEEEEECC-----CCeEEEEEccC---CCC--cEEEEEccCCCcEEEEE
Q 004217 103 LSPPPRSTIAAAFSPD----GKTLASTHGDHTVKIIDCQ-----TGSCLKVLHGH---RRT--PWVVRFHPLNPTIIASG 168 (767)
Q Consensus 103 L~gH~~sVtsVaFSpD----G~~LASgs~DGtVrVWDl~-----tg~~l~~L~gH---~~~--V~sLafsP~dg~lLaSg 168 (767)
..|.-..|..+.|.|- -..|++......|.||-+. +++.+.....+ .-+ ...+.||| ...+|+.-
T Consensus 52 viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHP-k~~iL~VL 130 (671)
T PF15390_consen 52 VIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHP-KKAILTVL 130 (671)
T ss_pred EeeccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccC-CCceEEEE
Confidence 4466677999999993 3244455566799999885 23333222111 111 24577999 66666655
Q ss_pred eCCCeEEEEECCCC--eEEEeecCCCCeEEEEEcCCCCEEEEEECCc--EEEEEcCCCccccC-CeEEecCCCCeEEEEE
Q 004217 169 SLDHEVRLWNASTA--ECIGSRDFYRPIASIAFHASGELLAVASGHK--LYIWRYNMREETSS-PRIVLRTRRSLRAVHF 243 (767)
Q Consensus 169 S~DGtVrIWDl~tg--~~i~~l~h~~~VtsVafSPdG~~LAsgSdd~--V~VWDl~t~~~~~~-~~~l~~h~~~VtsVaF 243 (767)
.....-.+++++.. +....+...+.|.|.+|..||+.|+++-+.. -+|||-........ ...+..-.+.|.++.-
T Consensus 131 T~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qKtL~~CsfcPVFdv~~~Icsi~A 210 (671)
T PF15390_consen 131 TARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQKTLHRCSFCPVFDVGGYICSIEA 210 (671)
T ss_pred ecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchhhhhhCCcceeecCCCceEEEEE
Confidence 44444455666533 3333467889999999999999887776655 88998655433221 1233444667888777
Q ss_pred ccCCCeEEEEEe
Q 004217 244 HPHAAPLLLTAE 255 (767)
Q Consensus 244 SPDG~~LlaSgs 255 (767)
.-|.+ ++.+.+
T Consensus 211 T~dsq-VAvaTE 221 (671)
T PF15390_consen 211 TVDSQ-VAVATE 221 (671)
T ss_pred eccce-EEEEec
Confidence 66665 444443
No 344
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=95.65 E-value=0.71 Score=52.01 Aligned_cols=157 Identities=18% Similarity=0.147 Sum_probs=87.8
Q ss_pred EEEEeCCCCCCCCC-CCCeEEEEECCCCCeEEEE-eCC----CeEEEEECCCCeEEEE-EccCCCCcEEEEEccCCCcEE
Q 004217 93 LHHLRPKYCPLSPP-PRSTIAAAFSPDGKTLAST-HGD----HTVKIIDCQTGSCLKV-LHGHRRTPWVVRFHPLNPTII 165 (767)
Q Consensus 93 IrlWd~~t~~L~gH-~~sVtsVaFSpDG~~LASg-s~D----GtVrVWDl~tg~~l~~-L~gH~~~V~sLafsP~dg~lL 165 (767)
-.++|...-. .++ ...+....+||||++||.+ +.. .+|+++|+++|+.+.. +... ....+.|.+ +++.|
T Consensus 109 evllD~n~l~-~~~~~~~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~-d~~~~ 184 (414)
T PF02897_consen 109 EVLLDPNELA-KDGGYVSLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP--KFSSVSWSD-DGKGF 184 (414)
T ss_dssp EEEEEGGGGS-TTSS-EEEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE--ESEEEEECT-TSSEE
T ss_pred EEEEcchHhh-ccCceEEeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc--ccceEEEeC-CCCEE
Confidence 4455654321 122 2334478999999998865 333 3599999999987653 2321 123499999 65555
Q ss_pred EEEeCC-----------CeEEEEECCCCeEE--Eeec--CCCC-eEEEEEcCCCCEEEEEE---CC-c-EEEEEcCCCc-
Q 004217 166 ASGSLD-----------HEVRLWNASTAECI--GSRD--FYRP-IASIAFHASGELLAVAS---GH-K-LYIWRYNMRE- 223 (767)
Q Consensus 166 aSgS~D-----------GtVrIWDl~tg~~i--~~l~--h~~~-VtsVafSPdG~~LAsgS---dd-~-V~VWDl~t~~- 223 (767)
+....| ..|+.|++.+.... ..++ .... ...+..++++++|+..+ .. . +++.|+....
T Consensus 185 ~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~ 264 (414)
T PF02897_consen 185 FYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGS 264 (414)
T ss_dssp EEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTT
T ss_pred EEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCC
Confidence 554432 24788888776432 2333 2233 66888999999887655 22 2 8888887751
Q ss_pred cccCCeEEecCCCCeEEEEEccCCCeEEEE
Q 004217 224 ETSSPRIVLRTRRSLRAVHFHPHAAPLLLT 253 (767)
Q Consensus 224 ~~~~~~~l~~h~~~VtsVaFSPDG~~LlaS 253 (767)
.......+......+....-+..+.+++.+
T Consensus 265 ~~~~~~~l~~~~~~~~~~v~~~~~~~yi~T 294 (414)
T PF02897_consen 265 PDAKPKLLSPREDGVEYYVDHHGDRLYILT 294 (414)
T ss_dssp SS-SEEEEEESSSS-EEEEEEETTEEEEEE
T ss_pred CcCCcEEEeCCCCceEEEEEccCCEEEEee
Confidence 011123344444444433333344444434
No 345
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=95.62 E-value=0.93 Score=47.86 Aligned_cols=142 Identities=12% Similarity=0.050 Sum_probs=94.8
Q ss_pred cCCCEEEEEeCCCeEEEEeCCC-C--CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEE-----------
Q 004217 79 DARRGLASWVEAESLHHLRPKY-C--PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKV----------- 144 (767)
Q Consensus 79 d~g~~LaSgs~DgsIrlWd~~t-~--~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~----------- 144 (767)
..+..|+.|.++| +.+++... . ....+...|..+...++-+.|++-+ |+.+.++++..-.....
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~ 82 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRS 82 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccccc
Confidence 4678888888888 78888722 2 1223344499999999877776655 59999999876433221
Q ss_pred ---EccCCCCcEEEE-EccCCCcEEEEEeCCCeEEEEECCCC-----eEEEeecCCCCeEEEEEcCCCCEEEEEECCcEE
Q 004217 145 ---LHGHRRTPWVVR-FHPLNPTIIASGSLDHEVRLWNASTA-----ECIGSRDFYRPIASIAFHASGELLAVASGHKLY 215 (767)
Q Consensus 145 ---L~gH~~~V~sLa-fsP~dg~lLaSgS~DGtVrIWDl~tg-----~~i~~l~h~~~VtsVafSPdG~~LAsgSdd~V~ 215 (767)
-......+..++ -....+...+.....++|.+|..... +..+++.....+.+++|. ++.|+.|..++..
T Consensus 83 ~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~~~~f~ 160 (275)
T PF00780_consen 83 LPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGTSKGFY 160 (275)
T ss_pred ccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEeCCceE
Confidence 011223344444 11223444444555668999887653 456667788999999998 6788888888899
Q ss_pred EEEcCCCcc
Q 004217 216 IWRYNMREE 224 (767)
Q Consensus 216 VWDl~t~~~ 224 (767)
+.|+.++..
T Consensus 161 ~idl~~~~~ 169 (275)
T PF00780_consen 161 LIDLNTGSP 169 (275)
T ss_pred EEecCCCCc
Confidence 999997654
No 346
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.49 E-value=0.47 Score=50.57 Aligned_cols=136 Identities=14% Similarity=0.030 Sum_probs=91.2
Q ss_pred EEEEcCCCEEEEEeCCCeEEEEeCCCCCCC---CCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCC
Q 004217 75 EAGRDARRGLASWVEAESLHHLRPKYCPLS---PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRT 151 (767)
Q Consensus 75 vA~sd~g~~LaSgs~DgsIrlWd~~t~~L~---gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~ 151 (767)
+...+....++.++-.+.+.--|.+++.+. --...|.+-+.- -|++++.|...|.+++.++++|.....+..-. .
T Consensus 17 VV~~dskT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~-~ 94 (354)
T KOG4649|consen 17 VVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILE-T 94 (354)
T ss_pred EEecCCceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehh-h
Confidence 334456777888888888888888776432 111222222221 47789999999999999999998777765332 2
Q ss_pred cE-EEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCCCCe-EEEEEcC-CCCEEEEEECCc
Q 004217 152 PW-VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPI-ASIAFHA-SGELLAVASGHK 213 (767)
Q Consensus 152 V~-sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~~V-tsVafSP-dG~~LAsgSdd~ 213 (767)
|. .....+ ++.++..|+.|++....|.++..++.+.+-.+.+ .+-+..| ++.+.++...+.
T Consensus 95 vk~~a~~d~-~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~ 158 (354)
T KOG4649|consen 95 VKVRAQCDF-DGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGA 158 (354)
T ss_pred hccceEEcC-CCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccce
Confidence 22 233456 8899999999999999999999999886644433 3344555 455444444444
No 347
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.48 E-value=0.15 Score=57.54 Aligned_cols=141 Identities=12% Similarity=0.066 Sum_probs=107.8
Q ss_pred EEEeCCCeEEEEeCCCC--C----CCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCC------CeEEEE--------
Q 004217 85 ASWVEAESLHHLRPKYC--P----LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT------GSCLKV-------- 144 (767)
Q Consensus 85 aSgs~DgsIrlWd~~t~--~----L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~t------g~~l~~-------- 144 (767)
++.-+++.|.++|.... + -.-|..+|.++.+++-+..+++....|.|.-|..+. .+....
T Consensus 116 Vs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy 195 (558)
T KOG0882|consen 116 VSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLY 195 (558)
T ss_pred eecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhh
Confidence 34457888899987643 1 235899999999999999999999999999998762 111111
Q ss_pred -EccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec---------------------------------C
Q 004217 145 -LHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD---------------------------------F 190 (767)
Q Consensus 145 -L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~---------------------------------h 190 (767)
+...+....++.|+| ++..+.+-+.|..|++++.++++.++.+. +
T Consensus 196 ~f~K~Kt~pts~Efsp-~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~ 274 (558)
T KOG0882|consen 196 GFPKAKTEPTSFEFSP-DGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKH 274 (558)
T ss_pred cccccccCccceEEcc-ccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhh
Confidence 223456788999999 89999999999999999999988755432 0
Q ss_pred C-CCeEEEEEcCCCCEEEEEECCcEEEEEcCCCcccc
Q 004217 191 Y-RPIASIAFHASGELLAVASGHKLYIWRYNMREETS 226 (767)
Q Consensus 191 ~-~~VtsVafSPdG~~LAsgSdd~V~VWDl~t~~~~~ 226 (767)
. ..-+.+.|+..|++|+-++-=+|+|.++.+....+
T Consensus 275 ~~~~~~~~~fdes~~flly~t~~gikvin~~tn~v~r 311 (558)
T KOG0882|consen 275 GSTVGTNAVFDESGNFLLYGTILGIKVINLDTNTVVR 311 (558)
T ss_pred cCcccceeEEcCCCCEEEeecceeEEEEEeecCeEEE
Confidence 0 01235789999999999988889999999887654
No 348
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=95.36 E-value=1.4 Score=49.78 Aligned_cols=138 Identities=14% Similarity=0.184 Sum_probs=77.8
Q ss_pred EEECCCCCeEEEEeC---CCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec
Q 004217 113 AAFSPDGKTLASTHG---DHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD 189 (767)
Q Consensus 113 VaFSpDG~~LASgs~---DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~ 189 (767)
=+|..||++|+.++. ...+.+.|+++++..+.-.+-........++| +.+.++-...+..|+--|+.+.+....+.
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~-~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~ 119 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSP-DDRALYYVKNGRSLRRVDLDTLEERVVYE 119 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-T-TSSEEEEEETTTEEEEEETTT--EEEEEE
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEec-CCCeEEEEECCCeEEEEECCcCcEEEEEE
Confidence 467889987766655 45678889999885544333223334566788 66776666666789999999988766655
Q ss_pred C-CCCeEEEEEc--CCCCEEEEEE----C-------------------CcEEEEEcCCCccccCCeEEecCCCCeEEEEE
Q 004217 190 F-YRPIASIAFH--ASGELLAVAS----G-------------------HKLYIWRYNMREETSSPRIVLRTRRSLRAVHF 243 (767)
Q Consensus 190 h-~~~VtsVafS--PdG~~LAsgS----d-------------------d~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaF 243 (767)
. ...+....|. .+++.++..- + .+|...|+.+++. ..+..-...+..+.|
T Consensus 120 ~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~----~~v~~~~~wlgH~~f 195 (386)
T PF14583_consen 120 VPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGER----KVVFEDTDWLGHVQF 195 (386)
T ss_dssp --TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--E----EEEEEESS-EEEEEE
T ss_pred CCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCce----eEEEecCccccCccc
Confidence 3 3334345554 4566654331 0 0256667777653 234455678899999
Q ss_pred ccCCCeEEEEEe
Q 004217 244 HPHAAPLLLTAE 255 (767)
Q Consensus 244 SPDG~~LlaSgs 255 (767)
+|....+++-|-
T Consensus 196 sP~dp~li~fCH 207 (386)
T PF14583_consen 196 SPTDPTLIMFCH 207 (386)
T ss_dssp ETTEEEEEEEEE
T ss_pred CCCCCCEEEEec
Confidence 998888887765
No 349
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=95.31 E-value=0.038 Score=65.90 Aligned_cols=112 Identities=18% Similarity=0.270 Sum_probs=83.2
Q ss_pred EEEECCCCCeEEEEeC----CCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEe
Q 004217 112 AAAFSPDGKTLASTHG----DHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS 187 (767)
Q Consensus 112 sVaFSpDG~~LASgs~----DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~ 187 (767)
-..|+|...+||.++. .|.|.||- ++|++-+... ..-.+.+++||| ..-.|+.|-.-|.+.+|...+.+.-..
T Consensus 20 i~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHp-e~~vLa~gwe~g~~~v~~~~~~e~htv 96 (1416)
T KOG3617|consen 20 ISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHP-EEFVLAQGWEMGVSDVQKTNTTETHTV 96 (1416)
T ss_pred ccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccCh-HHHHHhhccccceeEEEecCCceeeee
Confidence 3578888888887764 57888884 6676443221 122356799999 777888999999999999876554333
Q ss_pred -ecCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCcccc
Q 004217 188 -RDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETS 226 (767)
Q Consensus 188 -l~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~ 226 (767)
..|..+|..+.||++|..+.++..-+ |.+|.+.....+.
T Consensus 97 ~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q 137 (1416)
T KOG3617|consen 97 VETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQ 137 (1416)
T ss_pred ccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccc
Confidence 56899999999999999999998655 9999877544433
No 350
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.14 E-value=0.71 Score=49.09 Aligned_cols=142 Identities=15% Similarity=0.195 Sum_probs=87.4
Q ss_pred CeEEEEECCCCCeEEEEe---CCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEE-CCCCeE
Q 004217 109 STIAAAFSPDGKTLASTH---GDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWN-ASTAEC 184 (767)
Q Consensus 109 sVtsVaFSpDG~~LASgs---~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWD-l~tg~~ 184 (767)
.+...++|+||+.+|... ....++++... .....+. -...+....|++ ++.+.+....+...+++. ..+++.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~~ 100 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGTG 100 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cCCccccccccC-CCCEEEEEcCCCceEEEEecCCCcc
Confidence 689999999999887766 33455555543 3232221 223678889999 677777666667777774 333332
Q ss_pred EEe-e--c-CCCCeEEEEEcCCCCEEEEEE----CCcEEEEEcCCCcc-----ccCCeEEe-cCCCCeEEEEEccCCCeE
Q 004217 185 IGS-R--D-FYRPIASIAFHASGELLAVAS----GHKLYIWRYNMREE-----TSSPRIVL-RTRRSLRAVHFHPHAAPL 250 (767)
Q Consensus 185 i~~-l--~-h~~~VtsVafSPdG~~LAsgS----dd~V~VWDl~t~~~-----~~~~~~l~-~h~~~VtsVaFSPDG~~L 250 (767)
... . . ....|..+.+||||..+|.-. +++|.+=-+..... +..+..+. .....+.++.|.+++..+
T Consensus 101 ~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~ 180 (253)
T PF10647_consen 101 EPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLV 180 (253)
T ss_pred eeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEE
Confidence 221 1 1 222899999999999877766 34466665432211 11111121 235688999999999866
Q ss_pred EEEE
Q 004217 251 LLTA 254 (767)
Q Consensus 251 laSg 254 (767)
+.+.
T Consensus 181 V~~~ 184 (253)
T PF10647_consen 181 VLGR 184 (253)
T ss_pred EEeC
Confidence 5554
No 351
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=95.12 E-value=0.75 Score=51.68 Aligned_cols=102 Identities=10% Similarity=-0.049 Sum_probs=66.3
Q ss_pred CCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecC--CCCeE
Q 004217 118 DGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDF--YRPIA 195 (767)
Q Consensus 118 DG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h--~~~Vt 195 (767)
.+..++.++.++.+..+|..+|+.+....- .....+.. .+..++.++.|+.+..+|..+++.+..... .....
T Consensus 255 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~--~~~~~~~~---~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~ 329 (394)
T PRK11138 255 VGGVVYALAYNGNLVALDLRSGQIVWKREY--GSVNDFAV---DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLT 329 (394)
T ss_pred ECCEEEEEEcCCeEEEEECCCCCEEEeecC--CCccCcEE---ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCccc
Confidence 355677778899999999999987765431 11222222 345677778899999999999987765331 11122
Q ss_pred EEEEcCCCCEEEEEEC-CcEEEEEcCCCcccc
Q 004217 196 SIAFHASGELLAVASG-HKLYIWRYNMREETS 226 (767)
Q Consensus 196 sVafSPdG~~LAsgSd-d~V~VWDl~t~~~~~ 226 (767)
+... .+.+|++++. +.|++.|..+++.+.
T Consensus 330 sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~ 359 (394)
T PRK11138 330 APVL--YNGYLVVGDSEGYLHWINREDGRFVA 359 (394)
T ss_pred CCEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 2222 2345556664 449999999987654
No 352
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=94.90 E-value=0.4 Score=53.86 Aligned_cols=132 Identities=12% Similarity=0.033 Sum_probs=80.1
Q ss_pred CCEEEEEeCCCeEEEEeCCCCCCC--CCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCC-CCcEEEEE
Q 004217 81 RRGLASWVEAESLHHLRPKYCPLS--PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHR-RTPWVVRF 157 (767)
Q Consensus 81 g~~LaSgs~DgsIrlWd~~t~~L~--gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~-~~V~sLaf 157 (767)
+..++.++.++.+..+|..+++.. ........+. .++..|+.++.|+.+..+|..+|+.+.....-. ........
T Consensus 256 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v 333 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLRSGQIVWKREYGSVNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL 333 (394)
T ss_pred CCEEEEEEcCCeEEEEECCCCCEEEeecCCCccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE
Confidence 345666677888888888776321 0111111122 246678888899999999999998765443211 11222223
Q ss_pred ccCCCcEEEEEeCCCeEEEEECCCCeEEEeecC-CCCeE-EEEEcCCCCEEEEEEC-CcEEEEEc
Q 004217 158 HPLNPTIIASGSLDHEVRLWNASTAECIGSRDF-YRPIA-SIAFHASGELLAVASG-HKLYIWRY 219 (767)
Q Consensus 158 sP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h-~~~Vt-sVafSPdG~~LAsgSd-d~V~VWDl 219 (767)
.+..++.++.||.|.+.|..+|+.+..... ...+. ...+ .++ .|++++. +.|+.++.
T Consensus 334 ---~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~-~~~-~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 334 ---YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV-ADD-KLLIQARDGTVYAITR 393 (394)
T ss_pred ---ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE-ECC-EEEEEeCCceEEEEeC
Confidence 245677889999999999999998877643 22222 2222 234 5555554 45777653
No 353
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.60 E-value=0.26 Score=60.90 Aligned_cols=146 Identities=12% Similarity=0.093 Sum_probs=94.9
Q ss_pred CCeEEEEECCCCCeEEEE--eCCCeEEEEECCCCeE-----EEEEccC------CCCcEEEEEccCCCcEEEEEeCCCeE
Q 004217 108 RSTIAAAFSPDGKTLAST--HGDHTVKIIDCQTGSC-----LKVLHGH------RRTPWVVRFHPLNPTIIASGSLDHEV 174 (767)
Q Consensus 108 ~sVtsVaFSpDG~~LASg--s~DGtVrVWDl~tg~~-----l~~L~gH------~~~V~sLafsP~dg~lLaSgS~DGtV 174 (767)
-.+..+..++|++..++. +++-.|..||+++-.. ..-|+.| .....++.|+|.-....+.+..|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 356667777787766554 3444899999875321 1112222 23456788998555567777889999
Q ss_pred EEEECCCC-eEEEeecCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCC--ccccCCeEEecCCCCeEEEEEccCCCeE
Q 004217 175 RLWNASTA-ECIGSRDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMR--EETSSPRIVLRTRRSLRAVHFHPHAAPL 250 (767)
Q Consensus 175 rIWDl~tg-~~i~~l~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~--~~~~~~~~l~~h~~~VtsVaFSPDG~~L 250 (767)
++..+.-- ..+..+......++++|+|.|+.+++|-.++ +.-|...-. ..+..+-.. ....|.+|+|--...++
T Consensus 181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~--e~yrvl~v~Wl~t~efl 258 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVE--ENYRVLSVTWLSTQEFL 258 (1405)
T ss_pred hhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcC--CCcceeEEEEecceeEE
Confidence 98877643 2333456778899999999999999998766 555543322 111111111 15789999999988887
Q ss_pred EEEEe
Q 004217 251 LLTAE 255 (767)
Q Consensus 251 laSgs 255 (767)
++-+.
T Consensus 259 vvy~n 263 (1405)
T KOG3630|consen 259 VVYGN 263 (1405)
T ss_pred EEecc
Confidence 77554
No 354
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=94.60 E-value=1.1 Score=47.36 Aligned_cols=131 Identities=14% Similarity=0.149 Sum_probs=80.4
Q ss_pred CCCCeEEEEeCCCeEEEEECCC-CeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEE---------
Q 004217 117 PDGKTLASTHGDHTVKIIDCQT-GSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIG--------- 186 (767)
Q Consensus 117 pDG~~LASgs~DGtVrVWDl~t-g~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~--------- 186 (767)
..++.|+.|..+| +.+++... .+..... +...|..+..-+ +-+.++.-+ |+.+.++++..-....
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~-~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~ 79 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLP-ELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPK 79 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEec-ccCEEEEEc-CCccEEEEchhhccccccccccccc
Confidence 3578999999998 89999833 3333332 233499999998 666666554 6999999987644333
Q ss_pred ------eecCCCCeEEEE---EcCCCCEEEEEECCcEEEEEcCCCcccc-CCeEEecCCCCeEEEEEccCCCeEEEEE
Q 004217 187 ------SRDFYRPIASIA---FHASGELLAVASGHKLYIWRYNMREETS-SPRIVLRTRRSLRAVHFHPHAAPLLLTA 254 (767)
Q Consensus 187 ------~l~h~~~VtsVa---fSPdG~~LAsgSdd~V~VWDl~t~~~~~-~~~~l~~h~~~VtsVaFSPDG~~LlaSg 254 (767)
.+.....+...+ -...+.+|+++...+|.+|......... ...........+.+++|. ++.++.+.
T Consensus 80 ~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~ 155 (275)
T PF00780_consen 80 SRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGT 155 (275)
T ss_pred cccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEe
Confidence 122233444444 2233457777777788888776532110 112223446788999999 34455543
No 355
>PRK13616 lipoprotein LpqB; Provisional
Probab=94.56 E-value=0.97 Score=54.02 Aligned_cols=129 Identities=11% Similarity=0.061 Sum_probs=74.1
Q ss_pred CeEEEEECCCCCeEEEEeCC-CeEEEE-----------ECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEE
Q 004217 109 STIAAAFSPDGKTLASTHGD-HTVKII-----------DCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRL 176 (767)
Q Consensus 109 sVtsVaFSpDG~~LASgs~D-GtVrVW-----------Dl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrI 176 (767)
..+.-.|+|||+.|++.... ..+++. +++.+.... ...+.|..++|+| |+..++... ++.|.+
T Consensus 398 ~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSp-DG~RiA~i~-~g~v~V 472 (591)
T PRK13616 398 SLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSR-DGVRAAMII-GGKVYL 472 (591)
T ss_pred CCCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECC-CCCEEEEEE-CCEEEE
Confidence 47889999999988877533 223333 333332211 2346799999999 777766655 567766
Q ss_pred ---EECCCCeEEE----eec--CCCCeEEEEEcCCCCEEEEEECCc--EEEEEcCCCccccCCeEEec--CCCCeEEEEE
Q 004217 177 ---WNASTAECIG----SRD--FYRPIASIAFHASGELLAVASGHK--LYIWRYNMREETSSPRIVLR--TRRSLRAVHF 243 (767)
Q Consensus 177 ---WDl~tg~~i~----~l~--h~~~VtsVafSPdG~~LAsgSdd~--V~VWDl~t~~~~~~~~~l~~--h~~~VtsVaF 243 (767)
-....|+... .+. ....+..+.|..++.+++...+.. +...++..... . .+.. ....+.+|+-
T Consensus 473 a~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~-~---~~~~~n~~~~v~~vaa 548 (591)
T PRK13616 473 AVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSNS-D---ALPSRNLSAPVVAVAA 548 (591)
T ss_pred EEEEeCCCCceeecccEEeecccCCccccceEecCCEEEEEecCCCCceEEEecCCccc-c---ccCCCCccCceEEEec
Confidence 4434454111 121 233468899999999664433333 44444443321 1 1122 2566778887
Q ss_pred ccC
Q 004217 244 HPH 246 (767)
Q Consensus 244 SPD 246 (767)
+++
T Consensus 549 ~~~ 551 (591)
T PRK13616 549 SPS 551 (591)
T ss_pred CCc
Confidence 763
No 356
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.55 E-value=0.29 Score=56.37 Aligned_cols=134 Identities=12% Similarity=0.116 Sum_probs=91.9
Q ss_pred CCCCCeE-EEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCc-------EEEEEeCCCeEEEEECCCCeE--E
Q 004217 116 SPDGKTL-ASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPT-------IIASGSLDHEVRLWNASTAEC--I 185 (767)
Q Consensus 116 SpDG~~L-ASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~-------lLaSgS~DGtVrIWDl~tg~~--i 185 (767)
..+.++| .++.....++-.|++.|+.+..++-|.. |.-+.+.| +.+ .-+.|-.|+.|.-||.+-... +
T Consensus 342 ~~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~-d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl 419 (644)
T KOG2395|consen 342 RADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITP-DFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKL 419 (644)
T ss_pred ccccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccC-CcchhcccccccEEeecCCceEEecccccCccee
Confidence 3344544 4455556788899999999999987766 77788887 322 233466788999999984222 1
Q ss_pred Ee-----ecCCCCeEEEEEcCCCCEEEEEEC-CcEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217 186 GS-----RDFYRPIASIAFHASGELLAVASG-HKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (767)
Q Consensus 186 ~~-----l~h~~~VtsVafSPdG~~LAsgSd-d~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs 255 (767)
.. +.......|.+-..+| +|++|+. +.|++||- .+... ...+.+-...|..|..+.||++|++||.
T Consensus 420 ~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~A--KTAlPgLG~~I~hVdvtadGKwil~Tc~ 491 (644)
T KOG2395|consen 420 AVVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRA--KTALPGLGDAIKHVDVTADGKWILATCK 491 (644)
T ss_pred eeeeccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhh--hhcccccCCceeeEEeeccCcEEEEecc
Confidence 11 1233445566655555 6777775 55999996 33322 2456677899999999999999999997
No 357
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=94.46 E-value=3.3 Score=45.57 Aligned_cols=145 Identities=13% Similarity=0.168 Sum_probs=91.3
Q ss_pred CCeEEEEECCCCCeEEEEeC------C---CeEEEEECC-CCeEEEEEccCCCCcEEEEEccCCCcEE-EEEeCCCeEEE
Q 004217 108 RSTIAAAFSPDGKTLASTHG------D---HTVKIIDCQ-TGSCLKVLHGHRRTPWVVRFHPLNPTII-ASGSLDHEVRL 176 (767)
Q Consensus 108 ~sVtsVaFSpDG~~LASgs~------D---GtVrVWDl~-tg~~l~~L~gH~~~V~sLafsP~dg~lL-aSgS~DGtVrI 176 (767)
...+++...|+|.+-+.... + ..-.||-+. .+..++.+..+-..-+.|+|+| +++.+ ++=+..+.|.-
T Consensus 111 ~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~Sp-Dg~tly~aDT~~~~i~r 189 (307)
T COG3386 111 NRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSP-DGKTLYVADTPANRIHR 189 (307)
T ss_pred CCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECC-CCCEEEEEeCCCCeEEE
Confidence 45678889999987665443 0 112344444 5666777777666778999999 66544 44455688888
Q ss_pred EECCC--CeE---E-Ee-e-cCCCCeEEEEEcCCCCEEEEEECC--cEEEEEcCCCccccCCeEEecCCCCeEEEEEc-c
Q 004217 177 WNAST--AEC---I-GS-R-DFYRPIASIAFHASGELLAVASGH--KLYIWRYNMREETSSPRIVLRTRRSLRAVHFH-P 245 (767)
Q Consensus 177 WDl~t--g~~---i-~~-l-~h~~~VtsVafSPdG~~LAsgSdd--~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFS-P 245 (767)
|++.. +.. . .. + ...+..-.++.+.+|.+.+++..+ +|.+|+.. ++.+. .+.-....+++++|- |
T Consensus 190 ~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~---~i~lP~~~~t~~~FgG~ 265 (307)
T COG3386 190 YDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLG---EIKLPVKRPTNPAFGGP 265 (307)
T ss_pred EecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEE---EEECCCCCCccceEeCC
Confidence 87762 111 1 11 1 134555677888899877554443 59999988 66544 344444677888886 4
Q ss_pred CCCeEEEEEeeC
Q 004217 246 HAAPLLLTAEVN 257 (767)
Q Consensus 246 DG~~LlaSgsvw 257 (767)
+.+.|.+++...
T Consensus 266 ~~~~L~iTs~~~ 277 (307)
T COG3386 266 DLNTLYITSARS 277 (307)
T ss_pred CcCEEEEEecCC
Confidence 566677766543
No 358
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=94.28 E-value=2.1 Score=46.05 Aligned_cols=87 Identities=16% Similarity=0.099 Sum_probs=43.3
Q ss_pred eEEEEECCCCCeEEEEeCCC--eEEEEECCCCeEEEEEccCCC-CcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEE
Q 004217 110 TIAAAFSPDGKTLASTHGDH--TVKIIDCQTGSCLKVLHGHRR-TPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIG 186 (767)
Q Consensus 110 VtsVaFSpDG~~LASgs~DG--tVrVWDl~tg~~l~~L~gH~~-~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~ 186 (767)
...+.|..+|.++-+.+.-| .|+.+|+.+|+.+....-... ---.+... +++++.-.-.++...+||..+.+.+.
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~~~ 124 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKKIG 124 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEEEE
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceEEE
Confidence 45677766777777776655 577788888776544321111 11122222 22333333445555555555555555
Q ss_pred eecCCCCeEEEE
Q 004217 187 SRDFYRPIASIA 198 (767)
Q Consensus 187 ~l~h~~~VtsVa 198 (767)
.+.....=+.++
T Consensus 125 ~~~y~~EGWGLt 136 (264)
T PF05096_consen 125 TFPYPGEGWGLT 136 (264)
T ss_dssp EEE-SSS--EEE
T ss_pred EEecCCcceEEE
Confidence 544444434444
No 359
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=93.93 E-value=2.7 Score=44.90 Aligned_cols=142 Identities=13% Similarity=0.074 Sum_probs=79.1
Q ss_pred EEEEcCCCEEEEEeCCCeEEEEeCCCC------------C---CCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCC-
Q 004217 75 EAGRDARRGLASWVEAESLHHLRPKYC------------P---LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT- 138 (767)
Q Consensus 75 vA~sd~g~~LaSgs~DgsIrlWd~~t~------------~---L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~t- 138 (767)
++...++.++++--.++.+.+.+.... + ...+...+-.++|++.++.|+.+-.....+||.+..
T Consensus 70 I~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~ 149 (248)
T PF06977_consen 70 ITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGF 149 (248)
T ss_dssp EEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEEST
T ss_pred EEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccc
Confidence 334344555554434666666665221 1 123556799999999888887777776667776653
Q ss_pred --CeEEE--EE------ccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCC----------CCeEEEE
Q 004217 139 --GSCLK--VL------HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFY----------RPIASIA 198 (767)
Q Consensus 139 --g~~l~--~L------~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~----------~~VtsVa 198 (767)
...+. .. ......+.++.++|..+++++-...+..|.++| .+|+.+..+... .....|+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa 228 (248)
T PF06977_consen 150 PGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIA 228 (248)
T ss_dssp T-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEE
T ss_pred cCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEE
Confidence 22121 11 123456889999998888888889999999999 677776654321 2578999
Q ss_pred EcCCCCEEEEEECCcEEEE
Q 004217 199 FHASGELLAVASGHKLYIW 217 (767)
Q Consensus 199 fSPdG~~LAsgSdd~V~VW 217 (767)
|+++|++.+++--+..++|
T Consensus 229 ~d~~G~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 229 FDPDGNLYIVSEPNLFYRF 247 (248)
T ss_dssp E-TT--EEEEETTTEEEEE
T ss_pred ECCCCCEEEEcCCceEEEe
Confidence 9999977666544434443
No 360
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=93.92 E-value=4 Score=44.89 Aligned_cols=146 Identities=14% Similarity=0.105 Sum_probs=77.3
Q ss_pred CCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEEC-CCC
Q 004217 104 SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNA-STA 182 (767)
Q Consensus 104 ~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl-~tg 182 (767)
.+-.+.+..+.-++||++++++..-....-||--...-...-+.-...|..+.|.| ++.+.+.+ ..|.|+.=+. ...
T Consensus 141 ~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~-~~~lw~~~-~Gg~~~~s~~~~~~ 218 (302)
T PF14870_consen 141 SETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSP-DGNLWMLA-RGGQIQFSDDPDDG 218 (302)
T ss_dssp -S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-T-TS-EEEEE-TTTEEEEEE-TTEE
T ss_pred cCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecC-CCCEEEEe-CCcEEEEccCCCCc
Confidence 34567899999999999999887766667787543222222233567899999999 76666644 8888888772 222
Q ss_pred eEEEe--ec---CCCCeEEEEEcCCCCEEEEEECCcEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEE
Q 004217 183 ECIGS--RD---FYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLL 252 (767)
Q Consensus 183 ~~i~~--l~---h~~~VtsVafSPdG~~LAsgSdd~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~Lla 252 (767)
+.... .. ....+..++|.+++...++|+.+.+ +...+.++..++......-...++.|.|.++.+-++.
T Consensus 219 ~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~l 292 (302)
T PF14870_consen 219 ETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVL 292 (302)
T ss_dssp EEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE
T ss_pred cccccccCCcccCceeeEEEEecCCCCEEEEeCCccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEEE
Confidence 22221 11 2334789999999988888876653 3444555443311111223556889999877654444
No 361
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=93.88 E-value=2.9 Score=46.38 Aligned_cols=145 Identities=16% Similarity=0.103 Sum_probs=84.5
Q ss_pred CCCeEEEEECCCCCeEEEEeC--C---CeEEEEECCCCeEEEEEcc-CCCC---cEEEEEc-cCCCcEEEEEeCCCeEEE
Q 004217 107 PRSTIAAAFSPDGKTLASTHG--D---HTVKIIDCQTGSCLKVLHG-HRRT---PWVVRFH-PLNPTIIASGSLDHEVRL 176 (767)
Q Consensus 107 ~~sVtsVaFSpDG~~LASgs~--D---GtVrVWDl~tg~~l~~L~g-H~~~---V~sLafs-P~dg~lLaSgS~DGtVrI 176 (767)
..-+..+.|++|++.|+..-. + ..+.++|..++++...++. .... ...+.|. +++..++.....||.-+|
T Consensus 183 ~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hl 262 (353)
T PF00930_consen 183 DYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHL 262 (353)
T ss_dssp SEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEE
T ss_pred ccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEE
Confidence 345889999999984544332 2 3477778887765433322 2222 2355565 646667777778876555
Q ss_pred E--ECCCCeEEEeecCCCCeEE-EEEcCCCCEEEEEECC----c--EEEEEcC-CCccccCCeEEecCCCCeEEEEEccC
Q 004217 177 W--NASTAECIGSRDFYRPIAS-IAFHASGELLAVASGH----K--LYIWRYN-MREETSSPRIVLRTRRSLRAVHFHPH 246 (767)
Q Consensus 177 W--Dl~tg~~i~~l~h~~~Vts-VafSPdG~~LAsgSdd----~--V~VWDl~-t~~~~~~~~~l~~h~~~VtsVaFSPD 246 (767)
| +...+.........-.|.. +.|+++++.|...+.. . |+.-++. .+... .+.........+.|||+
T Consensus 263 y~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~----~LT~~~~~~~~~~~Spd 338 (353)
T PF00930_consen 263 YLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPK----CLTCEDGDHYSASFSPD 338 (353)
T ss_dssp EEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEE----ESSTTSSTTEEEEE-TT
T ss_pred EEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeE----eccCCCCCceEEEECCC
Confidence 5 5555654444445556744 6789988865544421 2 6666666 44332 22222222269999999
Q ss_pred CCeEEEEEe
Q 004217 247 AAPLLLTAE 255 (767)
Q Consensus 247 G~~LlaSgs 255 (767)
+++++.+++
T Consensus 339 g~y~v~~~s 347 (353)
T PF00930_consen 339 GKYYVDTYS 347 (353)
T ss_dssp SSEEEEEEE
T ss_pred CCEEEEEEc
Confidence 999988775
No 362
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=93.77 E-value=0.026 Score=65.77 Aligned_cols=130 Identities=16% Similarity=0.197 Sum_probs=89.0
Q ss_pred CCCeEEEEeCCCC--------CCCC-CCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEcc
Q 004217 89 EAESLHHLRPKYC--------PLSP-PPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHP 159 (767)
Q Consensus 89 ~DgsIrlWd~~t~--------~L~g-H~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP 159 (767)
.|..+.+||..+. .+.+ ......+++|-.|.+++.+|.....++++|++... .....-.+..+..+...|
T Consensus 127 nds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~-~~~~svnTk~vqG~tVdp 205 (783)
T KOG1008|consen 127 NDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSL-DSVSSVNTKYVQGITVDP 205 (783)
T ss_pred ccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhh-hhhhhhhhhhcccceecC
Confidence 4667999999765 2333 44566789999999999999999999999987321 111112234556677777
Q ss_pred CCCcEEEEEeCCCeEEEEE-CCCC-eEEEeecC-----CCCeEEEEEcCCCC-EEEEEECCc--EEEEEcC
Q 004217 160 LNPTIIASGSLDHEVRLWN-ASTA-ECIGSRDF-----YRPIASIAFHASGE-LLAVASGHK--LYIWRYN 220 (767)
Q Consensus 160 ~dg~lLaSgS~DGtVrIWD-l~tg-~~i~~l~h-----~~~VtsVafSPdG~-~LAsgSdd~--V~VWDl~ 220 (767)
...+++++-. |+.|-+|| .++- ..+..+.+ ...+..++|+|... .+++.+.+. |+.+|+.
T Consensus 206 ~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 206 FSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred CCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 6778888765 99999999 4332 22222222 23589999999765 666666544 9999875
No 363
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.61 E-value=0.3 Score=60.17 Aligned_cols=97 Identities=18% Similarity=0.175 Sum_probs=67.5
Q ss_pred CCCEEEEEeCCCeEEEEeCCCC--CC---CCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEE
Q 004217 80 ARRGLASWVEAESLHHLRPKYC--PL---SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWV 154 (767)
Q Consensus 80 ~g~~LaSgs~DgsIrlWd~~t~--~L---~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~s 154 (767)
.+..++.++..|-+-..|.... ++ ..-.++|++++|+.||++++.|-.+|.|.+||...++.++.+..|..+...
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~ 177 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG 177 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence 3445555665565555554432 11 123468999999999999999999999999999999999888777665544
Q ss_pred E---EEccCCCcEEEEEeCCCeEEEEEC
Q 004217 155 V---RFHPLNPTIIASGSLDHEVRLWNA 179 (767)
Q Consensus 155 L---afsP~dg~lLaSgS~DGtVrIWDl 179 (767)
+ .+.. ++..++++...|. +|.+
T Consensus 178 vi~v~~t~-~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 178 VIFVGRTS-QNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred EEEEEEeC-CCcEEEEccCCCc--eEEE
Confidence 3 3444 4456777776665 5543
No 364
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.53 E-value=1.6 Score=46.75 Aligned_cols=128 Identities=9% Similarity=-0.024 Sum_probs=87.4
Q ss_pred CCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCCCCeE-EE
Q 004217 119 GKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIA-SI 197 (767)
Q Consensus 119 G~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~~Vt-sV 197 (767)
..+++.|+..+.+.-.|..+|+....-. -...+.+-+.- -+++++.|...|.+.+.+.++|+....+.....|. ..
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v--vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a 99 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV--VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRA 99 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE--ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccce
Confidence 4577888999999999999998765432 12233332222 26789999999999999999998887766444443 24
Q ss_pred EEcCCCCEEEEEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEcc-CCCeEEE
Q 004217 198 AFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHP-HAAPLLL 252 (767)
Q Consensus 198 afSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSP-DG~~Lla 252 (767)
..++++.++..|+.|+ .+..|.++...+. ...-......+-+..| ++...++
T Consensus 100 ~~d~~~glIycgshd~~~yalD~~~~~cVy---kskcgG~~f~sP~i~~g~~sly~a 153 (354)
T KOG4649|consen 100 QCDFDGGLIYCGSHDGNFYALDPKTYGCVY---KSKCGGGTFVSPVIAPGDGSLYAA 153 (354)
T ss_pred EEcCCCceEEEecCCCcEEEecccccceEE---ecccCCceeccceecCCCceEEEE
Confidence 4678999999999766 9999999887655 2222223333445555 5554443
No 365
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.48 E-value=5.4 Score=43.36 Aligned_cols=170 Identities=16% Similarity=0.173 Sum_probs=104.9
Q ss_pred EEEcCCCEEEEEeCCCeEEEEeCCCCCCCCCCCCeEEEEECC-CCCeEEEEeCCCe-EEEEECCCCeEEEEEccCCCCc-
Q 004217 76 AGRDARRGLASWVEAESLHHLRPKYCPLSPPPRSTIAAAFSP-DGKTLASTHGDHT-VKIIDCQTGSCLKVLHGHRRTP- 152 (767)
Q Consensus 76 A~sd~g~~LaSgs~DgsIrlWd~~t~~L~gH~~sVtsVaFSp-DG~~LASgs~DGt-VrVWDl~tg~~l~~L~gH~~~V- 152 (767)
...++.-.++..+++|++..--. -......|+|+| ...-++.+-.-|+ ..++|..+.+...++...++.-
T Consensus 43 ~~~dgs~g~a~~~eaGk~v~~~~-------lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHf 115 (366)
T COG3490 43 DARDGSFGAATLSEAGKIVFATA-------LPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHF 115 (366)
T ss_pred eccCCceeEEEEccCCceeeeee-------cccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCcee
Confidence 34456667788888888753221 123345677777 4445555555444 5678888877665553222211
Q ss_pred -EEEEEccCCCcEEEEEeCC-----CeEEEEECCCC-eEEEeec-CCCCeEEEEEcCCCCEEEEEECC------------
Q 004217 153 -WVVRFHPLNPTIIASGSLD-----HEVRLWNASTA-ECIGSRD-FYRPIASIAFHASGELLAVASGH------------ 212 (767)
Q Consensus 153 -~sLafsP~dg~lLaSgS~D-----GtVrIWDl~tg-~~i~~l~-h~~~VtsVafSPdG~~LAsgSdd------------ 212 (767)
-.=.||| ++.+|...-.| |.|-|||.+.+ +.+.++. |.-....+.|.+||+.++.+..+
T Consensus 116 yGHGvfs~-dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~l 194 (366)
T COG3490 116 YGHGVFSP-DGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTEL 194 (366)
T ss_pred ecccccCC-CCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCcccc
Confidence 1235899 88888776544 67999999843 2333333 55566788999999998877531
Q ss_pred -------cEEEEEcCCCccccCCeEEe--cCCCCeEEEEEccCCCeEEEEEe
Q 004217 213 -------KLYIWRYNMREETSSPRIVL--RTRRSLRAVHFHPHAAPLLLTAE 255 (767)
Q Consensus 213 -------~V~VWDl~t~~~~~~~~~l~--~h~~~VtsVaFSPDG~~LlaSgs 255 (767)
.+.+.|..+++.+.+. .+. .+.-.|+.++..+||. ++..+.
T Consensus 195 NldsMePSlvlld~atG~liekh-~Lp~~l~~lSiRHld~g~dgt-vwfgcQ 244 (366)
T COG3490 195 NLDSMEPSLVLLDAATGNLIEKH-TLPASLRQLSIRHLDIGRDGT-VWFGCQ 244 (366)
T ss_pred chhhcCccEEEEeccccchhhhc-cCchhhhhcceeeeeeCCCCc-EEEEEE
Confidence 1455565666554421 222 3456789999999998 555554
No 366
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=93.29 E-value=4 Score=45.91 Aligned_cols=199 Identities=14% Similarity=0.008 Sum_probs=106.9
Q ss_pred eeecccccceecC-CcceEEEEEEcCCCEEEEE-eCCC----eEEEEeCCCCCCCCCC--CC-eEEEEECCCCCeEEEEe
Q 004217 56 KRLLGETARKCSG-SFSQIFEAGRDARRGLASW-VEAE----SLHHLRPKYCPLSPPP--RS-TIAAAFSPDGKTLASTH 126 (767)
Q Consensus 56 k~~wd~~~~~~~~-s~s~~~vA~sd~g~~LaSg-s~Dg----sIrlWd~~t~~L~gH~--~s-VtsVaFSpDG~~LASgs 126 (767)
+.++|.+...-.. ......+.++.++++++-+ +..| .|++.|+.++++.... .. ...+.|.+|++.|+...
T Consensus 109 evllD~n~l~~~~~~~~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~ 188 (414)
T PF02897_consen 109 EVLLDPNELAKDGGYVSLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTR 188 (414)
T ss_dssp EEEEEGGGGSTTSS-EEEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEE
T ss_pred EEEEcchHhhccCceEEeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEE
Confidence 4555555433332 1122245666777776643 4444 4999999988543211 11 12399999998887665
Q ss_pred CCC-----------eEEEEECCCCeE--EEEEccCCCC--cEEEEEccCCCcEEEEE-eCC---CeEEEEECCCC-----
Q 004217 127 GDH-----------TVKIIDCQTGSC--LKVLHGHRRT--PWVVRFHPLNPTIIASG-SLD---HEVRLWNASTA----- 182 (767)
Q Consensus 127 ~DG-----------tVrVWDl~tg~~--l~~L~gH~~~--V~sLafsP~dg~lLaSg-S~D---GtVrIWDl~tg----- 182 (767)
.|. .|+.|++.+... ...+.+.... ...+..++ ++++++.. ... ..+.+.|+..+
T Consensus 189 ~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~-d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~ 267 (414)
T PF02897_consen 189 FDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSK-DGRYLFISSSSGTSESEVYLLDLDDGGSPDA 267 (414)
T ss_dssp CSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-T-TSSEEEEEEESSSSEEEEEEEECCCTTTSS-
T ss_pred eCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecC-cccEEEEEEEccccCCeEEEEeccccCCCcC
Confidence 433 488888877632 3445444433 45788888 77765543 332 35788888875
Q ss_pred eEEEeecCCCCeEEEEEcCCCCEEEEEECC----cEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217 183 ECIGSRDFYRPIASIAFHASGELLAVASGH----KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (767)
Q Consensus 183 ~~i~~l~h~~~VtsVafSPdG~~LAsgSdd----~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs 255 (767)
+..........+....-+..+.+++....+ +|...++...........+..+...+.-..+...+.+|++.-.
T Consensus 268 ~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~ 344 (414)
T PF02897_consen 268 KPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYR 344 (414)
T ss_dssp SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEE
T ss_pred CcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEE
Confidence 333333433444333323344455544432 2777777776542212255666665444455556676776543
No 367
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=93.22 E-value=5.8 Score=42.36 Aligned_cols=170 Identities=11% Similarity=0.116 Sum_probs=84.5
Q ss_pred EEEEEcCCCEEEEEeCCCeE-EEEeCCCCCCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCe------EEEEEc
Q 004217 74 FEAGRDARRGLASWVEAESL-HHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS------CLKVLH 146 (767)
Q Consensus 74 ~vA~sd~g~~LaSgs~DgsI-rlWd~~t~~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~------~l~~L~ 146 (767)
++++.+....|+.-+.+|.| +.+. +.+ .+..-.|++.-++.++++--.++.+.++++.... ....+.
T Consensus 36 LfaV~d~~~~i~els~~G~vlr~i~-----l~g-~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~ 109 (248)
T PF06977_consen 36 LFAVQDEPGEIYELSLDGKVLRRIP-----LDG-FGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKIS 109 (248)
T ss_dssp EEEEETTTTEEEEEETT--EEEEEE------SS--SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE
T ss_pred EEEEECCCCEEEEEcCCCCEEEEEe-----CCC-CCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEe
Confidence 44555555555555555443 2222 233 3567889998788777665568999999884321 112221
Q ss_pred -----cCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCC---CeEEEe-----e----cCCCCeEEEEEcCCCCEEEEE
Q 004217 147 -----GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST---AECIGS-----R----DFYRPIASIAFHASGELLAVA 209 (767)
Q Consensus 147 -----gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~t---g~~i~~-----l----~h~~~VtsVafSPdG~~LAsg 209 (767)
.+...+-.++|+| ..+.|+.+-...-..||.+.. ...+.. + .....+.+++++|....|..-
T Consensus 110 l~~~~~~N~G~EGla~D~-~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliL 188 (248)
T PF06977_consen 110 LGFPNKGNKGFEGLAYDP-KTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLIL 188 (248)
T ss_dssp ---S---SS--EEEEEET-TTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEE
T ss_pred cccccCCCcceEEEEEcC-CCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEE
Confidence 2445689999999 555555556666666666553 222211 1 134567899999987655555
Q ss_pred EC-Cc-EEEEEcCCCccccCCeEEec--C-----CCCeEEEEEccCCCeEEE
Q 004217 210 SG-HK-LYIWRYNMREETSSPRIVLR--T-----RRSLRAVHFHPHAAPLLL 252 (767)
Q Consensus 210 Sd-d~-V~VWDl~t~~~~~~~~~l~~--h-----~~~VtsVaFSPDG~~Lla 252 (767)
|+ .+ |.++| .+++.+. ...+.. | -..--.|+|.++|+.+++
T Consensus 189 S~es~~l~~~d-~~G~~~~-~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv 238 (248)
T PF06977_consen 189 SDESRLLLELD-RQGRVVS-SLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV 238 (248)
T ss_dssp ETTTTEEEEE--TT--EEE-EEE-STTGGG-SS---SEEEEEE-TT--EEEE
T ss_pred ECCCCeEEEEC-CCCCEEE-EEEeCCcccCcccccCCccEEEECCCCCEEEE
Confidence 53 33 88888 4444333 112221 1 124678999999984443
No 368
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=92.87 E-value=1.6 Score=51.28 Aligned_cols=142 Identities=13% Similarity=0.200 Sum_probs=88.0
Q ss_pred CCeEEEEECCCCCeEEEEe---CCCeEEEEECCCCeEEEEEccCCCCcEEEEEccC---CCcEEEEEeCCCeEEEEECCC
Q 004217 108 RSTIAAAFSPDGKTLASTH---GDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPL---NPTIIASGSLDHEVRLWNAST 181 (767)
Q Consensus 108 ~sVtsVaFSpDG~~LASgs---~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~---dg~lLaSgS~DGtVrIWDl~t 181 (767)
.+|..++|. ||+.++-.. .+|.+++=| .+.+..| ..|..+.|.|- +..-++.....+.|.+|.+.-
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCC---ccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 478899998 676654332 234444322 2334444 34889999983 233455667788899998862
Q ss_pred -----CeEEEe----ecCCCCe--EEEEEcCCCCEEEEEECCcE-EEEEcCCCccccCCeEEecCCCCeEEEEEccCCCe
Q 004217 182 -----AECIGS----RDFYRPI--ASIAFHASGELLAVASGHKL-YIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAP 249 (767)
Q Consensus 182 -----g~~i~~----l~h~~~V--tsVafSPdG~~LAsgSdd~V-~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~ 249 (767)
++.+.. +...-+| ..+.|||....|++-....+ .+++++..... ...-....+.|.+.+|.+||++
T Consensus 92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~sr--VkaDi~~~G~IhCACWT~DG~R 169 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSR--VKADIKTSGLIHCACWTKDGQR 169 (671)
T ss_pred CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCce--EEEeccCCceEEEEEecCcCCE
Confidence 222221 2112222 35679999999988876664 45565543321 1233456788999999999999
Q ss_pred EEEEEe------eCCc
Q 004217 250 LLLTAE------VNDL 259 (767)
Q Consensus 250 LlaSgs------vwdl 259 (767)
|+++-+ +||-
T Consensus 170 LVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 170 LVVAVGSSLHSYIWDS 185 (671)
T ss_pred EEEEeCCeEEEEEecC
Confidence 887654 7764
No 369
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=92.82 E-value=1.4 Score=53.98 Aligned_cols=129 Identities=13% Similarity=0.108 Sum_probs=84.2
Q ss_pred CCCeEEEEeCCCCCC----CCCCC-CeEEEEECC-----CCCeEEEEeCCCeEEEEECCCC--eEEE-EEc--cCCCCcE
Q 004217 89 EAESLHHLRPKYCPL----SPPPR-STIAAAFSP-----DGKTLASTHGDHTVKIIDCQTG--SCLK-VLH--GHRRTPW 153 (767)
Q Consensus 89 ~DgsIrlWd~~t~~L----~gH~~-sVtsVaFSp-----DG~~LASgs~DGtVrVWDl~tg--~~l~-~L~--gH~~~V~ 153 (767)
....|...|++++++ ..|.. +|..++-.. +....+.|-.+..+..||.+-. +++. ..+ ..+....
T Consensus 502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs 581 (794)
T PF08553_consen 502 NPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFS 581 (794)
T ss_pred CCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCce
Confidence 456677777777643 23332 255443321 2334566778889999998753 2221 111 1233456
Q ss_pred EEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEe-e-cCCCCeEEEEEcCCCCEEEEEECCcEEEEEcC
Q 004217 154 VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-R-DFYRPIASIAFHASGELLAVASGHKLYIWRYN 220 (767)
Q Consensus 154 sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~-l-~h~~~VtsVafSPdG~~LAsgSdd~V~VWDl~ 220 (767)
|++-. ...+||.|+.+|.||+||-- ++.-++ + +...+|..|..+.||+||++.+..-|.++|+.
T Consensus 582 ~~aTt--~~G~iavgs~~G~IRLyd~~-g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t~ 647 (794)
T PF08553_consen 582 CFATT--EDGYIAVGSNKGDIRLYDRL-GKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLIDTL 647 (794)
T ss_pred EEEec--CCceEEEEeCCCcEEeeccc-chhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEEEe
Confidence 66554 46689999999999999943 332222 3 35789999999999999998888888888863
No 370
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=92.61 E-value=2.9 Score=45.54 Aligned_cols=130 Identities=9% Similarity=0.138 Sum_probs=76.4
Q ss_pred CCeEEEEeC----------CCeEEEEECCCC----eEEEEE--ccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCC
Q 004217 119 GKTLASTHG----------DHTVKIIDCQTG----SCLKVL--HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTA 182 (767)
Q Consensus 119 G~~LASgs~----------DGtVrVWDl~tg----~~l~~L--~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg 182 (767)
..+|+.|.. .|.|.++++... ..+..+ ....+.|++++-. ++.++++ .++.|.+|++...
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~--~~~lv~~--~g~~l~v~~l~~~ 117 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF--NGRLVVA--VGNKLYVYDLDNS 117 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE--TTEEEEE--ETTEEEEEEEETT
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh--CCEEEEe--ecCEEEEEEccCc
Confidence 457777654 289999999884 223222 2356889888755 3444443 3588999999988
Q ss_pred e-EEEee--cCCCCeEEEEEcCCCCEEEEEEC-CcEEEEEcCCCcc-ccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217 183 E-CIGSR--DFYRPIASIAFHASGELLAVASG-HKLYIWRYNMREE-TSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (767)
Q Consensus 183 ~-~i~~l--~h~~~VtsVafSPdG~~LAsgSd-d~V~VWDl~t~~~-~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs 255 (767)
+ ....- .....+.++... +++|++|.- +++.++.++.... .. ..........++++.|-+|++.++++..
T Consensus 118 ~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~-~va~d~~~~~v~~~~~l~d~~~~i~~D~ 192 (321)
T PF03178_consen 118 KTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLI-LVARDYQPRWVTAAEFLVDEDTIIVGDK 192 (321)
T ss_dssp SSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EE-EEEEESS-BEEEEEEEE-SSSEEEEEET
T ss_pred ccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEE-EEEecCCCccEEEEEEecCCcEEEEEcC
Confidence 7 55443 334456666554 668888874 5577665544221 22 1112223567899999877765555543
No 371
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=92.51 E-value=2.2 Score=51.17 Aligned_cols=111 Identities=16% Similarity=0.153 Sum_probs=72.3
Q ss_pred CeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEc-cCCCCcEEEEEccC-CCcEEEEEeCCCeEEEEECC-----C
Q 004217 109 STIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH-GHRRTPWVVRFHPL-NPTIIASGSLDHEVRLWNAS-----T 181 (767)
Q Consensus 109 sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~-gH~~~V~sLafsP~-dg~lLaSgS~DGtVrIWDl~-----t 181 (767)
...-+.-|.-++..++-+....+.|||.+.+.....-. ...+.|..+.|... +++.+++.+-.+.|.++--. .
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~ 110 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN 110 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence 34445555545544444445689999999887432221 34678999998631 67788888889999998432 1
Q ss_pred ----CeEEEee---cC-CCCeEEEEEcCCCCEEEEEECCcEEEEEcC
Q 004217 182 ----AECIGSR---DF-YRPIASIAFHASGELLAVASGHKLYIWRYN 220 (767)
Q Consensus 182 ----g~~i~~l---~h-~~~VtsVafSPdG~~LAsgSdd~V~VWDl~ 220 (767)
...++.+ .+ ..+|.+..|.++|.++ +|+++.+.|+|-.
T Consensus 111 ~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~Lv-V~sGNqlfv~dk~ 156 (631)
T PF12234_consen 111 KGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLV-VGSGNQLFVFDKW 156 (631)
T ss_pred CCcccceeEEEEeecCCCCCccceeEecCCeEE-EEeCCEEEEECCC
Confidence 2233333 23 3678899999998554 5667888888743
No 372
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=92.45 E-value=6.9 Score=45.62 Aligned_cols=99 Identities=11% Similarity=0.114 Sum_probs=64.3
Q ss_pred eEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEE-----------------EeCCCeEEEEECCCCe
Q 004217 121 TLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIAS-----------------GSLDHEVRLWNASTAE 183 (767)
Q Consensus 121 ~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaS-----------------gS~DGtVrIWDl~tg~ 183 (767)
.++.++.+|.+...|.++|+.+.....- ...+..+| +.+++. ...+|.+.-.|+.+++
T Consensus 303 ~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~ 377 (488)
T cd00216 303 AIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGK 377 (488)
T ss_pred EEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCc
Confidence 5778888999999999999988765421 11123333 222221 1246789999999999
Q ss_pred EEEeecCC---------CCe--EEEEEcCCCCEEEEEEC-CcEEEEEcCCCcccc
Q 004217 184 CIGSRDFY---------RPI--ASIAFHASGELLAVASG-HKLYIWRYNMREETS 226 (767)
Q Consensus 184 ~i~~l~h~---------~~V--tsVafSPdG~~LAsgSd-d~V~VWDl~t~~~~~ 226 (767)
.+...... .+. ..+. -.+.+|++++. +.|+.+|.++++.+.
T Consensus 378 ~~W~~~~~~~~~~~~~g~~~~~~~~~--~~g~~v~~g~~dG~l~ald~~tG~~lW 430 (488)
T cd00216 378 VVWEKREGTIRDSWNIGFPHWGGSLA--TAGNLVFAGAADGYFRAFDATTGKELW 430 (488)
T ss_pred EeeEeeCCccccccccCCcccCcceE--ecCCeEEEECCCCeEEEEECCCCceee
Confidence 88776533 111 1122 24566777764 559999999998766
No 373
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=92.43 E-value=6.3 Score=43.42 Aligned_cols=134 Identities=19% Similarity=0.196 Sum_probs=75.9
Q ss_pred EEEEEeCCCeEEEEeCCCCCC--CCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEc----cCC-CCcEEE
Q 004217 83 GLASWVEAESLHHLRPKYCPL--SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH----GHR-RTPWVV 155 (767)
Q Consensus 83 ~LaSgs~DgsIrlWd~~t~~L--~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~----gH~-~~V~sL 155 (767)
.+++-...+.|..|+..+++. -.+.+.+.++..-.++..|+++.. -+.+++.+++..+..+. +.. ...+.+
T Consensus 39 L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~ 116 (307)
T COG3386 39 LLWVDILGGRIHRLDPETGKKRVFPSPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPEDGLPLNRPNDG 116 (307)
T ss_pred EEEEeCCCCeEEEecCCcCceEEEECCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccccCCCCcCCCCce
Confidence 344445555666666654421 123344455444444555555443 46777877666533332 111 345678
Q ss_pred EEccCCCcEEEEEeC-----------CCeEEEEECCCCeEEEeec-CCCCeEEEEEcCCCCEEEEEEC--CcEEEEEcC
Q 004217 156 RFHPLNPTIIASGSL-----------DHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASG--HKLYIWRYN 220 (767)
Q Consensus 156 afsP~dg~lLaSgS~-----------DGtVrIWDl~tg~~i~~l~-h~~~VtsVafSPdG~~LAsgSd--d~V~VWDl~ 220 (767)
...| ++.+.++... -|.|...|. .+..++.+. +-..-+.|+||||++.|..+.. +.|.-|++.
T Consensus 117 ~v~p-dG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d 193 (307)
T COG3386 117 VVDP-DGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLD 193 (307)
T ss_pred eEcC-CCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecC
Confidence 8899 7777666443 133333343 455554443 3455678999999998888765 447777775
No 374
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=92.35 E-value=1.6 Score=40.92 Aligned_cols=93 Identities=12% Similarity=0.051 Sum_probs=64.3
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCCCC-CCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEE
Q 004217 79 DARRGLASWVEAESLHHLRPKYCPL-SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRF 157 (767)
Q Consensus 79 d~g~~LaSgs~DgsIrlWd~~t~~L-~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLaf 157 (767)
++...|+.|++|..||+|+-..... ..-.+.|+.+.-... ..++.+-.+|+|-+|+- ...+...+. +..+.++.+
T Consensus 13 dg~~eLlvGs~D~~IRvf~~~e~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~RlWRiKS-K~~~~~~~~ 88 (111)
T PF14783_consen 13 DGENELLVGSDDFEIRVFKGDEIVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRLWRIKS-KNQVTSMAF 88 (111)
T ss_pred CCcceEEEecCCcEEEEEeCCcEEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeC--cceeeeecc-CCCeEEEEE
Confidence 3458899999999999999865421 123456777777765 67899999999999985 334555553 334666665
Q ss_pred ccCC---CcEEEEEeCCCeEE
Q 004217 158 HPLN---PTIIASGSLDHEVR 175 (767)
Q Consensus 158 sP~d---g~lLaSgS~DGtVr 175 (767)
...+ ...|++|-.+|.|-
T Consensus 89 ~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 89 YDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred EcCCCCCceEEEEEecCCeEE
Confidence 4322 23788888888764
No 375
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=92.30 E-value=3.9 Score=45.79 Aligned_cols=100 Identities=15% Similarity=0.101 Sum_probs=56.1
Q ss_pred CCeEEEEECCCCCeEEEEe-----------CCC-eEEEEECCC--Ce--EEEEEccCCCCcEEEEEccCCCcEEEEEeCC
Q 004217 108 RSTIAAAFSPDGKTLASTH-----------GDH-TVKIIDCQT--GS--CLKVLHGHRRTPWVVRFHPLNPTIIASGSLD 171 (767)
Q Consensus 108 ~sVtsVaFSpDG~~LASgs-----------~DG-tVrVWDl~t--g~--~l~~L~gH~~~V~sLafsP~dg~lLaSgS~D 171 (767)
.....|+|.++|+++++-. ..+ .|.+++-.+ |+ ....|...-.....++|.+ ++ ++++ ..+
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~-~G-lyV~-~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAV-GG-VYVA-TPP 90 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEec-CC-EEEe-CCC
Confidence 3467788888888776642 223 677776432 33 2344443344568899988 66 5554 444
Q ss_pred CeEEEEECCCC-----e--EEEe-ecC-----CCCeEEEEEcCCCCEEEEEE
Q 004217 172 HEVRLWNASTA-----E--CIGS-RDF-----YRPIASIAFHASGELLAVAS 210 (767)
Q Consensus 172 GtVrIWDl~tg-----~--~i~~-l~h-----~~~VtsVafSPdG~~LAsgS 210 (767)
...++.|.... + .+.. +.. ......++|.|||.+.++-+
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 33334454321 1 1211 222 23467899999998555433
No 376
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=92.10 E-value=21 Score=41.15 Aligned_cols=175 Identities=14% Similarity=0.144 Sum_probs=82.9
Q ss_pred CCCEEEEEe-CCCeEEEEeCCCCCCC--------C---C----CCCeEEEEECCCCCeEEEEeC------CCeEEEEECC
Q 004217 80 ARRGLASWV-EAESLHHLRPKYCPLS--------P---P----PRSTIAAAFSPDGKTLASTHG------DHTVKIIDCQ 137 (767)
Q Consensus 80 ~g~~LaSgs-~DgsIrlWd~~t~~L~--------g---H----~~sVtsVaFSpDG~~LASgs~------DGtVrVWDl~ 137 (767)
.+++|+..+ ....|.+.|..+.... . + -..-..+..-|+|+.++|+-. -|-+.+.|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 455665554 7888999999864211 0 0 011233444568988888633 2568888988
Q ss_pred CCeEEEEEccCC---CCcEEEEEccCCCcEEEEEeC--------------------CCeEEEEECCCCeEEEeecCC---
Q 004217 138 TGSCLKVLHGHR---RTPWVVRFHPLNPTIIASGSL--------------------DHEVRLWNASTAECIGSRDFY--- 191 (767)
Q Consensus 138 tg~~l~~L~gH~---~~V~sLafsP~dg~lLaSgS~--------------------DGtVrIWDl~tg~~i~~l~h~--- 191 (767)
+.+......... ..-+.+-|.| ..+.++|... ..++.+||+.+.+.++++...
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g 244 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEG 244 (461)
T ss_dssp T--EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTE
T ss_pred cccccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCC
Confidence 887777665432 2346788899 8888888652 368999999999999997644
Q ss_pred CCeEEEEEc--CCCCEEEEEE--CCcEEEEEc-CCCcccc-CCeEEe----------c-------CCCCeEEEEEccCCC
Q 004217 192 RPIASIAFH--ASGELLAVAS--GHKLYIWRY-NMREETS-SPRIVL----------R-------TRRSLRAVHFHPHAA 248 (767)
Q Consensus 192 ~~VtsVafS--PdG~~LAsgS--dd~V~VWDl-~t~~~~~-~~~~l~----------~-------h~~~VtsVaFSPDG~ 248 (767)
.....|.|. |+..+=++++ ...|..|-- ..++-.. +...+. . -..-|+.|..|.|.+
T Consensus 245 ~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDr 324 (461)
T PF05694_consen 245 QMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDR 324 (461)
T ss_dssp EEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-
T ss_pred CceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCC
Confidence 234566664 5555544544 344554433 3322100 000000 0 024579999999999
Q ss_pred eEEEEEe
Q 004217 249 PLLLTAE 255 (767)
Q Consensus 249 ~LlaSgs 255 (767)
+|.+++-
T Consensus 325 fLYvs~W 331 (461)
T PF05694_consen 325 FLYVSNW 331 (461)
T ss_dssp EEEEEET
T ss_pred EEEEEcc
Confidence 9888763
No 377
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=92.08 E-value=0.81 Score=47.92 Aligned_cols=105 Identities=10% Similarity=0.035 Sum_probs=66.7
Q ss_pred EEEEcCCCEEEEEeCCCeEEEEeCCCC-----CCCCCCCCeEE-EEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccC
Q 004217 75 EAGRDARRGLASWVEAESLHHLRPKYC-----PLSPPPRSTIA-AAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGH 148 (767)
Q Consensus 75 vA~sd~g~~LaSgs~DgsIrlWd~~t~-----~L~gH~~sVts-VaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH 148 (767)
+........++.|..++.|.+|+.... ....-...|.+ |.--.++.+..+++.|+.|+.|++.-++.+.....|
T Consensus 64 ~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h 143 (238)
T KOG2444|consen 64 QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQH 143 (238)
T ss_pred eeecccCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccc
Confidence 444457788999999999999998621 11112222333 222336668889999999999999988877777667
Q ss_pred C-CCcEEEEEccCCCcEEEEE--eCCCeEEEEECC
Q 004217 149 R-RTPWVVRFHPLNPTIIASG--SLDHEVRLWNAS 180 (767)
Q Consensus 149 ~-~~V~sLafsP~dg~lLaSg--S~DGtVrIWDl~ 180 (767)
+ ..+....... .+.++.+. |.|..++.|++.
T Consensus 144 ~~~~~e~~ivv~-sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 144 NFESGEELIVVG-SDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred cCCCcceeEEec-CCceEEeeccccchhhhhcchh
Confidence 6 3333333333 34455554 555666666554
No 378
>PRK13684 Ycf48-like protein; Provisional
Probab=91.94 E-value=21 Score=39.56 Aligned_cols=141 Identities=13% Similarity=0.096 Sum_probs=80.4
Q ss_pred CCCeEEEEECCCCCeEEEEeCCCeEEE-EECCCCeEEEEE-ccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeE
Q 004217 107 PRSTIAAAFSPDGKTLASTHGDHTVKI-IDCQTGSCLKVL-HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC 184 (767)
Q Consensus 107 ~~sVtsVaFSpDG~~LASgs~DGtVrV-WDl~tg~~l~~L-~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~ 184 (767)
...+.++.+.+++.+++++. .|.+.. +| ..++....+ ..-...++.+.+.+ ++..++.+ ..|.+++=....+..
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~-~g~~~~vg-~~G~~~~~s~d~G~s 247 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQP-DGNLWMLA-RGGQIRFNDPDDLES 247 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEEcC-CCCCeEEEeeCCCcccceeeeEcC-CCCEEEEe-cCCEEEEccCCCCCc
Confidence 45789999999987776554 455443 22 223322222 33446788999999 77766654 567665323344443
Q ss_pred EEeec-----CCCCeEEEEEcCCCCEEEEEECCcEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEE
Q 004217 185 IGSRD-----FYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLL 252 (767)
Q Consensus 185 i~~l~-----h~~~VtsVafSPdG~~LAsgSdd~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~Lla 252 (767)
..... ....+..+.|.++++.++++.++.|. ...+.++..........-....+.+.|..+++.+++
T Consensus 248 W~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (334)
T PRK13684 248 WSKPIIPEITNGYGYLDLAYRTPGEIWAGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVL 319 (334)
T ss_pred cccccCCccccccceeeEEEcCCCCEEEEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEE
Confidence 33221 22457889999998877777655443 444444432211110122346788888877775444
No 379
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.92 E-value=1.4 Score=50.98 Aligned_cols=135 Identities=18% Similarity=0.136 Sum_probs=90.0
Q ss_pred CEEEEEeCCCeEEEEeCCCCCCC----CCCCCeEEEEECCCCC--eE-----EEEeCCCeEEEEECCCC-e-EEEEEccC
Q 004217 82 RGLASWVEAESLHHLRPKYCPLS----PPPRSTIAAAFSPDGK--TL-----ASTHGDHTVKIIDCQTG-S-CLKVLHGH 148 (767)
Q Consensus 82 ~~LaSgs~DgsIrlWd~~t~~L~----gH~~sVtsVaFSpDG~--~L-----ASgs~DGtVrVWDl~tg-~-~l~~L~gH 148 (767)
-.+.++.+...++..|++.+++. -|.. |.-+.+.||.+ .| +.|-.|..|.-||.+-. + .+..-++|
T Consensus 347 lil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~k 425 (644)
T KOG2395|consen 347 LILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSK 425 (644)
T ss_pred eEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecc
Confidence 34455666666777777777432 2333 88888888654 22 44666888999998632 2 22222333
Q ss_pred C----CCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEe-e-cCCCCeEEEEEcCCCCEEEEEECCcEEEEEcC
Q 004217 149 R----RTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-R-DFYRPIASIAFHASGELLAVASGHKLYIWRYN 220 (767)
Q Consensus 149 ~----~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~-l-~h~~~VtsVafSPdG~~LAsgSdd~V~VWDl~ 220 (767)
. ....|.+- +...+++.||.+|.||+||- .+..-++ + +...+|..|..+.+|++|+..++..+.+.|+.
T Consensus 426 qy~~k~nFsc~aT--T~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t~ 500 (644)
T KOG2395|consen 426 QYSTKNNFSCFAT--TESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDTL 500 (644)
T ss_pred ccccccccceeee--cCCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEecccEEEEEEEe
Confidence 2 22334433 35678999999999999997 4443333 3 36789999999999999998888877777765
No 380
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=91.62 E-value=0.56 Score=56.54 Aligned_cols=90 Identities=13% Similarity=0.130 Sum_probs=70.4
Q ss_pred CCCeEEEEeCCCCCCC---CCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEE
Q 004217 89 EAESLHHLRPKYCPLS---PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTII 165 (767)
Q Consensus 89 ~DgsIrlWd~~t~~L~---gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lL 165 (767)
..|+|.|+-- +++-. ..+-.+++++|+|..-.|+.|-.-|.+.+|...+.+.-.....|+..|..+.|++ ++..+
T Consensus 39 r~GSVtIfad-tGEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~-~G~~l 116 (1416)
T KOG3617|consen 39 RGGSVTIFAD-TGEPQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSH-DGTVL 116 (1416)
T ss_pred CCceEEEEec-CCCCCcccccceehhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecC-CCCeE
Confidence 3456666643 22211 1122356799999988999999999999999887765555577999999999999 99999
Q ss_pred EEEeCCCeEEEEECC
Q 004217 166 ASGSLDHEVRLWNAS 180 (767)
Q Consensus 166 aSgS~DGtVrIWDl~ 180 (767)
+++..-|.|.+|...
T Consensus 117 ~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 117 MTLDNPGSVHLWRYD 131 (1416)
T ss_pred EEcCCCceeEEEEee
Confidence 999999999999776
No 381
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=91.49 E-value=3.2 Score=46.94 Aligned_cols=173 Identities=15% Similarity=0.099 Sum_probs=93.5
Q ss_pred cCC-CEEEEEeCCCe--EEEEeCCCC---CCCCCC-CCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCC
Q 004217 79 DAR-RGLASWVEAES--LHHLRPKYC---PLSPPP-RSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRT 151 (767)
Q Consensus 79 d~g-~~LaSgs~Dgs--IrlWd~~t~---~L~gH~-~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~ 151 (767)
.+| +.|+.+..|+. +.+.|+.++ +|.... .......++++.+.|+-...+..|+-.|+++.+....+......
T Consensus 45 ~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~ 124 (386)
T PF14583_consen 45 DDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDW 124 (386)
T ss_dssp TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTE
T ss_pred CCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCccc
Confidence 444 44444444554 566677766 455443 22335677888888877666678999999998876666666666
Q ss_pred cEEEEEcc-CCCcEEEEEeC----------------------CCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCC-EEE
Q 004217 152 PWVVRFHP-LNPTIIASGSL----------------------DHEVRLWNASTAECIGSRDFYRPIASIAFHASGE-LLA 207 (767)
Q Consensus 152 V~sLafsP-~dg~lLaSgS~----------------------DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~-~LA 207 (767)
+-...|.. .++..++-.-. ...|.--|+.+|+....+.....+.-+.|+|... +|+
T Consensus 125 ~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~ 204 (386)
T PF14583_consen 125 KGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIM 204 (386)
T ss_dssp EEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEE
T ss_pred ccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCCCCEEE
Confidence 65566642 24555443211 1346666888988887788888889999999764 666
Q ss_pred EEECC---c--EEEEEcCCCccccCCeEEecC--CCCeEEEEEccCCCeEEEE
Q 004217 208 VASGH---K--LYIWRYNMREETSSPRIVLRT--RRSLRAVHFHPHAAPLLLT 253 (767)
Q Consensus 208 sgSdd---~--V~VWDl~t~~~~~~~~~l~~h--~~~VtsVaFSPDG~~LlaS 253 (767)
.|-.+ . -+||-+++..... ..+..+ ...+..=-|.|||..|..-
T Consensus 205 fCHEGpw~~Vd~RiW~i~~dg~~~--~~v~~~~~~e~~gHEfw~~DG~~i~y~ 255 (386)
T PF14583_consen 205 FCHEGPWDLVDQRIWTINTDGSNV--KKVHRRMEGESVGHEFWVPDGSTIWYD 255 (386)
T ss_dssp EEE-S-TTTSS-SEEEEETTS-----EESS---TTEEEEEEEE-TTSS-EEEE
T ss_pred EeccCCcceeceEEEEEEcCCCcc--eeeecCCCCcccccccccCCCCEEEEE
Confidence 66533 2 3677665433211 111122 3345556688998876653
No 382
>PF08954 DUF1900: Domain of unknown function (DUF1900); InterPro: IPR015049 This domain is predominantly found in the structural protein coronin, and is duplicated in some sequences. It has no known function []. ; PDB: 2B4E_A 2AQ5_A.
Probab=91.28 E-value=0.075 Score=51.54 Aligned_cols=67 Identities=19% Similarity=0.142 Sum_probs=42.9
Q ss_pred cccccccCCceeeeeccCCCCceeeeeccCCCCCCCCCCCCCCccccccccccCCcccccccccccc
Q 004217 332 TQQSLRSSSSVRLLTYSTPSGQYELVLSPIASNRSSPMPDGTGTDSFVSEIDGALPQAAIGAVGTLD 398 (767)
Q Consensus 332 ~~~~~~ss~~~~l~~~~~~~~q~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (767)
....+|.+++..+++||.+++-....-....-.++|++.++.++.++++++.+..+++++..||...
T Consensus 3 ~~~~lD~s~g~L~P~yD~dt~llyl~gKGD~~ir~yEv~~~~p~l~~l~~~~s~~~~~G~~~lPK~~ 69 (136)
T PF08954_consen 3 ATQELDTSSGVLMPFYDEDTNLLYLAGKGDGNIRYYEVSDESPYLHYLSEYRSPEPQKGFAFLPKRA 69 (136)
T ss_dssp EEEE----SS-EEEEE-TTT-EEEEEETT-S-EEEEEE-SSTTSEEEEEEE--SS--SEEEE--GGG
T ss_pred eEEeccCCCceeEeeEcCCCCEEEEEeccCcEEEEEEEcCCCCceEEccccccCCCeEeeEecCccc
Confidence 4567899999999999998866555555544559999999999999999999999999999988766
No 383
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=90.97 E-value=3.8 Score=47.47 Aligned_cols=134 Identities=12% Similarity=0.148 Sum_probs=86.6
Q ss_pred CCCCCeEEE-EeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccC-------CCcEEEEEeCCCeEEEEECCC-CeEEE
Q 004217 116 SPDGKTLAS-THGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPL-------NPTIIASGSLDHEVRLWNAST-AECIG 186 (767)
Q Consensus 116 SpDG~~LAS-gs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~-------dg~lLaSgS~DGtVrIWDl~t-g~~i~ 186 (767)
..|..+|+. |.....++-.|++.|+.+..+.-|... -+.|.|. +...|+ |-.|..|.-.|.+- |..+.
T Consensus 476 ~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~gNKi~ 552 (776)
T COG5167 476 DNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARGNKIK 552 (776)
T ss_pred cCCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEE-eecccceEEecccccCCcee
Confidence 345555544 444567888899999999999877665 5788883 123344 44555565556653 43344
Q ss_pred eecCCCCeEEEEEcCC----CCEEEEEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217 187 SRDFYRPIASIAFHAS----GELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (767)
Q Consensus 187 ~l~h~~~VtsVafSPd----G~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs 255 (767)
.......++.-.|+.- .-++|+++..+ |++||--.... ...+.+....|..|..+.+|++++++|.
T Consensus 553 v~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rA---KtalP~lG~aIk~idvta~Gk~ilaTCk 623 (776)
T COG5167 553 VVESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRA---KTALPGLGDAIKHIDVTANGKHILATCK 623 (776)
T ss_pred eeeehhccccccccccccccCceEEEecCCCceeeehhhcchh---hhcCcccccceeeeEeecCCcEEEEeec
Confidence 3333333333334332 23888888666 99999543322 2245566788999999999999999998
No 384
>PRK10115 protease 2; Provisional
Probab=90.84 E-value=41 Score=41.20 Aligned_cols=194 Identities=13% Similarity=-0.009 Sum_probs=97.8
Q ss_pred eeecccccceec-CCcceEEEEEEcCCCEEEEE-----eCCCeEEEEeCCCCCC--CCCCCCeEEEEECCCCCeEEEEeC
Q 004217 56 KRLLGETARKCS-GSFSQIFEAGRDARRGLASW-----VEAESLHHLRPKYCPL--SPPPRSTIAAAFSPDGKTLASTHG 127 (767)
Q Consensus 56 k~~wd~~~~~~~-~s~s~~~vA~sd~g~~LaSg-----s~DgsIrlWd~~t~~L--~gH~~sVtsVaFSpDG~~LASgs~ 127 (767)
+.++|.+...-. .......+..+.+++.|+-+ ++...|++.|+.++.. ......-..++|++|++.|+....
T Consensus 112 ~~llD~n~~a~~~~~~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~~~~~w~~D~~~~~y~~~ 191 (686)
T PRK10115 112 ETLLDANKRAAHSEFYTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVEPSFVWANDSWTFYYVRK 191 (686)
T ss_pred EEEEcchhhccCCCcEEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcceEEEEeeCCCEEEEEEe
Confidence 445554433211 22223344556677766643 2333478888877751 222222256999999987766644
Q ss_pred C------CeEEEEECCCC--eEEEEEccCCCCcEEEEEccCCCcEEEEEeC---CCeEEEEECC--CCeEEEeecCCCC-
Q 004217 128 D------HTVKIIDCQTG--SCLKVLHGHRRTPWVVRFHPLNPTIIASGSL---DHEVRLWNAS--TAECIGSRDFYRP- 193 (767)
Q Consensus 128 D------GtVrVWDl~tg--~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~---DGtVrIWDl~--tg~~i~~l~h~~~- 193 (767)
+ ..|+.+++.++ +-...+...........+.+.++++++..+. ++.+.+|+.. +++....+.....
T Consensus 192 ~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 271 (686)
T PRK10115 192 HPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDH 271 (686)
T ss_pred cCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCC
Confidence 2 36888899887 3334444333333323344435665444332 4578898853 3443333332222
Q ss_pred eEEEEEcCCCCEEEEEECC--c--EEEEEcCCCccccCCeEEecC-C-CCeEEEEEccCCCeEEEEEe
Q 004217 194 IASIAFHASGELLAVASGH--K--LYIWRYNMREETSSPRIVLRT-R-RSLRAVHFHPHAAPLLLTAE 255 (767)
Q Consensus 194 VtsVafSPdG~~LAsgSdd--~--V~VWDl~t~~~~~~~~~l~~h-~-~~VtsVaFSPDG~~LlaSgs 255 (767)
...+. +..+.+++....+ . |...++.... ....+..+ . ..|..+.+. +++|+++..
T Consensus 272 ~~~~~-~~~~~ly~~tn~~~~~~~l~~~~~~~~~---~~~~l~~~~~~~~i~~~~~~--~~~l~~~~~ 333 (686)
T PRK10115 272 EYSLD-HYQHRFYLRSNRHGKNFGLYRTRVRDEQ---QWEELIPPRENIMLEGFTLF--TDWLVVEER 333 (686)
T ss_pred EEEEE-eCCCEEEEEEcCCCCCceEEEecCCCcc---cCeEEECCCCCCEEEEEEEE--CCEEEEEEE
Confidence 22222 3333333333322 2 4444544221 12345555 2 367778877 445665543
No 385
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=90.77 E-value=0.72 Score=36.59 Aligned_cols=34 Identities=15% Similarity=0.137 Sum_probs=29.8
Q ss_pred CCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeE
Q 004217 107 PRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSC 141 (767)
Q Consensus 107 ~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~ 141 (767)
...|.+++|+|...+||.+..||.|.|+.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 446999999999999999999999999998 4543
No 386
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=90.13 E-value=9.3 Score=42.77 Aligned_cols=101 Identities=10% Similarity=0.079 Sum_probs=56.9
Q ss_pred CCeEEEEECCCCCeEEEEeCCCeEEEEECCC-----CeE--E-EEEcc----CCCCcEEEEEccCCCcEEEEEeCC----
Q 004217 108 RSTIAAAFSPDGKTLASTHGDHTVKIIDCQT-----GSC--L-KVLHG----HRRTPWVVRFHPLNPTIIASGSLD---- 171 (767)
Q Consensus 108 ~sVtsVaFSpDG~~LASgs~DGtVrVWDl~t-----g~~--l-~~L~g----H~~~V~sLafsP~dg~lLaSgS~D---- 171 (767)
.....++|.++| +++ +..+...++.|... ++. + ..+.. +......+.|.| ++.+.++-+..
T Consensus 72 ~~p~Gi~~~~~G-lyV-~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~ 148 (367)
T TIGR02604 72 SMVTGLAVAVGG-VYV-ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLASK 148 (367)
T ss_pred CCccceeEecCC-EEE-eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCCCce
Confidence 346889999988 444 44444334445432 121 1 22322 134477899999 88877765521
Q ss_pred ---------------CeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEEC
Q 004217 172 ---------------HEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG 211 (767)
Q Consensus 172 ---------------GtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSd 211 (767)
+.|.-+|..+++.......-.....++|+++|+++++-.+
T Consensus 149 ~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn~ 203 (367)
T TIGR02604 149 VTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCDND 203 (367)
T ss_pred eccCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCCEEEEccC
Confidence 3455555555443322222234567999999988766543
No 387
>PRK10115 protease 2; Provisional
Probab=89.81 E-value=17 Score=44.42 Aligned_cols=110 Identities=10% Similarity=0.049 Sum_probs=66.7
Q ss_pred CCeEEEEECCCCCeEEEEeC-----CCeEEEEECCCCeEEE-EEccCCCCcEEEEEccCCCcEE-EEEeCC-----CeEE
Q 004217 108 RSTIAAAFSPDGKTLASTHG-----DHTVKIIDCQTGSCLK-VLHGHRRTPWVVRFHPLNPTII-ASGSLD-----HEVR 175 (767)
Q Consensus 108 ~sVtsVaFSpDG~~LASgs~-----DGtVrVWDl~tg~~l~-~L~gH~~~V~sLafsP~dg~lL-aSgS~D-----GtVr 175 (767)
-.+..+.|||||++|+.+.. ...|++.|+.+|+.+. .+.+ .. ..++|.+ +++.| ++...+ ..|.
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~-~~--~~~~w~~-D~~~~~y~~~~~~~~~~~~v~ 202 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN-VE--PSFVWAN-DSWTFYYVRKHPVTLLPYQVW 202 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC-cc--eEEEEee-CCCEEEEEEecCCCCCCCEEE
Confidence 45778899999999887643 2468999999886432 2222 11 4699999 55544 443322 3688
Q ss_pred EEECCCC--eEEEeecC-CCCeE-EEEEcCCCCEEEEEEC----CcEEEEEcCC
Q 004217 176 LWNASTA--ECIGSRDF-YRPIA-SIAFHASGELLAVASG----HKLYIWRYNM 221 (767)
Q Consensus 176 IWDl~tg--~~i~~l~h-~~~Vt-sVafSPdG~~LAsgSd----d~V~VWDl~t 221 (767)
.+++.++ +-...+.. ..... .+..+.++++++..+. ..+.+|+...
T Consensus 203 ~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~ 256 (686)
T PRK10115 203 RHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAEL 256 (686)
T ss_pred EEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcC
Confidence 8898887 33333332 22233 3333448887665542 2388988543
No 388
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=89.70 E-value=24 Score=40.36 Aligned_cols=169 Identities=11% Similarity=0.051 Sum_probs=84.1
Q ss_pred eEEEEEEcCCCEEEEEeCCCeEEEEeCCCCC---C-------CCCCCCeEEEEECCCCCeEEEEeCCCeEEEEE-CCCCe
Q 004217 72 QIFEAGRDARRGLASWVEAESLHHLRPKYCP---L-------SPPPRSTIAAAFSPDGKTLASTHGDHTVKIID-CQTGS 140 (767)
Q Consensus 72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~---L-------~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWD-l~tg~ 140 (767)
.+.+.+ .....|+...+||.++++|..... + .-....+....+..+|-.+.+ .++.+.+.+ .....
T Consensus 83 iv~~~w-t~~e~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt--~~~~~~~v~n~~~~~ 159 (410)
T PF04841_consen 83 IVGMGW-TDDEELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVLT--GNNRFYVVNNIDEPV 159 (410)
T ss_pred EEEEEE-CCCCeEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCCEEEEC--CCCeEEEEeCccccc
Confidence 344444 346778888899999999985222 0 011122233344445533333 344444432 22111
Q ss_pred EEEEEccCCCCcEE----------EEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEE
Q 004217 141 CLKVLHGHRRTPWV----------VRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS 210 (767)
Q Consensus 141 ~l~~L~gH~~~V~s----------LafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgS 210 (767)
..+.+..-...... ..++. +....+....++.+.+-+-...+. +...+++..++.||+|++||.-.
T Consensus 160 ~~~~~~~~p~~~~~~~~~~~~~~i~~l~~-~~~~~i~~~~g~~i~~i~~~~~~~---i~~~~~i~~iavSpng~~iAl~t 235 (410)
T PF04841_consen 160 KLRRLPEIPGLWTKFHWWPSWTVIPLLSS-DRVVEILLANGETIYIIDENSFKQ---IDSDGPIIKIAVSPNGKFIALFT 235 (410)
T ss_pred hhhccccCCCcccccccccccccceEeec-CcceEEEEecCCEEEEEEcccccc---ccCCCCeEEEEECCCCCEEEEEE
Confidence 11111110000000 12333 333333344444455333222111 33346899999999999999888
Q ss_pred CCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCe
Q 004217 211 GHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAP 249 (767)
Q Consensus 211 dd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~ 249 (767)
+++ +.+...+-.+... .....-......+.|.-+...
T Consensus 236 ~~g~l~v~ssDf~~~~~--e~~~~~~~~p~~~~WCG~dav 273 (410)
T PF04841_consen 236 DSGNLWVVSSDFSEKLC--EFDTDSKSPPKQMAWCGNDAV 273 (410)
T ss_pred CCCCEEEEECcccceeE--EeecCcCCCCcEEEEECCCcE
Confidence 655 8888765544322 111222456678889877653
No 389
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.60 E-value=1 Score=55.71 Aligned_cols=100 Identities=13% Similarity=0.161 Sum_probs=70.1
Q ss_pred CCCeEEEEeCCCeEEEEECCCC-eEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec-CCCCe-
Q 004217 118 DGKTLASTHGDHTVKIIDCQTG-SCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPI- 194 (767)
Q Consensus 118 DG~~LASgs~DGtVrVWDl~tg-~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~-h~~~V- 194 (767)
.+..++.|+..|.|...|.... .....=..-.++|++++|+. ++.+++.|-.+|-|.+||+..++..+.+. +..+.
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~-dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQ-DGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVT 176 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecC-CCceeccccCCCcEEEEEccCCcceeeeeecCCccc
Confidence 4567888988899999887643 11111123457899999999 99999999999999999999998888754 44333
Q ss_pred --EEEEEcCCCCEEEEEECCcEEEEEc
Q 004217 195 --ASIAFHASGELLAVASGHKLYIWRY 219 (767)
Q Consensus 195 --tsVafSPdG~~LAsgSdd~V~VWDl 219 (767)
-.+.+..++..+.++..++. +|.+
T Consensus 177 ~vi~v~~t~~nS~llt~D~~Gs-f~~l 202 (1206)
T KOG2079|consen 177 GVIFVGRTSQNSKLLTSDTGGS-FWKL 202 (1206)
T ss_pred eEEEEEEeCCCcEEEEccCCCc-eEEE
Confidence 33445555565666654442 5554
No 390
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=89.57 E-value=8 Score=45.08 Aligned_cols=105 Identities=12% Similarity=0.109 Sum_probs=65.3
Q ss_pred CCEEEEEeCCCeEEEEeCCCCCCC----CCCC------CeE--EEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccC
Q 004217 81 RRGLASWVEAESLHHLRPKYCPLS----PPPR------STI--AAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGH 148 (767)
Q Consensus 81 g~~LaSgs~DgsIrlWd~~t~~L~----gH~~------sVt--sVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH 148 (767)
+..++.++.++.+.-.|..++++. .... .+. .+... ++..++.++.|+.|.-+|.++|+.+..+...
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 445666777888888888877422 1111 010 11111 2267778888999999999999998877543
Q ss_pred CCC-----c-EEEEEccCCCcEEEEEe---------CCCeEEEEECCCCeEEEeec
Q 004217 149 RRT-----P-WVVRFHPLNPTIIASGS---------LDHEVRLWNASTAECIGSRD 189 (767)
Q Consensus 149 ~~~-----V-~sLafsP~dg~lLaSgS---------~DGtVrIWDl~tg~~i~~l~ 189 (767)
... + ....+. + .+++.++ .++.|..+|..+|+.+..+.
T Consensus 140 ~~~~~~~~i~ssP~v~--~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~ 192 (488)
T cd00216 140 DQVPPGYTMTGAPTIV--K-KLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFY 192 (488)
T ss_pred CCcCcceEecCCCEEE--C-CEEEEeccccccccCCCCcEEEEEECCCCceeeEee
Confidence 221 1 112222 2 3444443 36889999999999888754
No 391
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.38 E-value=4.5 Score=43.92 Aligned_cols=154 Identities=15% Similarity=0.163 Sum_probs=93.0
Q ss_pred CCCCCCCCeEEEEECCCCCeEEEEeCC-----CeEEEEECCCC-eEEEEEccCCCCcEEEEEccCCCcEEEEEeC-----
Q 004217 102 PLSPPPRSTIAAAFSPDGKTLASTHGD-----HTVKIIDCQTG-SCLKVLHGHRRTPWVVRFHPLNPTIIASGSL----- 170 (767)
Q Consensus 102 ~L~gH~~sVtsVaFSpDG~~LASgs~D-----GtVrVWDl~tg-~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~----- 170 (767)
-+.+|. .||+||.+|...-+| |.|-|||.+.+ ..+..+..|.-....+.|.+ |++.++.+..
T Consensus 114 HfyGHG------vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~-DGrtlvvanGGIeth 186 (366)
T COG3490 114 HFYGHG------VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMA-DGRTLVVANGGIETH 186 (366)
T ss_pred eeeccc------ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEec-CCcEEEEeCCceecc
Confidence 355664 599999999876554 78999998754 45667888887888899999 8888777532
Q ss_pred -------------CCeEEEEECCCCeEEEeec-----CCCCeEEEEEcCCCCEEEEEEC-----Cc-EEEEEcCCCcccc
Q 004217 171 -------------DHEVRLWNASTAECIGSRD-----FYRPIASIAFHASGELLAVASG-----HK-LYIWRYNMREETS 226 (767)
Q Consensus 171 -------------DGtVrIWDl~tg~~i~~l~-----h~~~VtsVafSPdG~~LAsgSd-----d~-V~VWDl~t~~~~~ 226 (767)
.-++.+.|..+|+.+.+.. +.-.|..++..+||+.++.+-. +. ..+=-...++.+.
T Consensus 187 pdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~ 266 (366)
T COG3490 187 PDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLE 266 (366)
T ss_pred cccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCc
Confidence 1134455555666554422 3456888899999987766541 21 1111122222222
Q ss_pred CC----eEEecCCCCeEEEEEccCCCeEEEEEe------eCCcCCC
Q 004217 227 SP----RIVLRTRRSLRAVHFHPHAAPLLLTAE------VNDLDSS 262 (767)
Q Consensus 227 ~~----~~l~~h~~~VtsVaFSPDG~~LlaSgs------vwdl~s~ 262 (767)
.. .........|-+|+.+-+..+++.|+- +||..++
T Consensus 267 ~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG 312 (366)
T COG3490 267 FLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATG 312 (366)
T ss_pred ccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCC
Confidence 00 001112346777888766665555542 6666543
No 392
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=89.16 E-value=9.3 Score=43.57 Aligned_cols=141 Identities=13% Similarity=0.073 Sum_probs=77.8
Q ss_pred eEEEEEEcCCCEEEEEeCCCeEEEEeCCCCCCCCCCC--CeEEEEECCCCCeEEEEeCCCeEEEEECCC--------C-e
Q 004217 72 QIFEAGRDARRGLASWVEAESLHHLRPKYCPLSPPPR--STIAAAFSPDGKTLASTHGDHTVKIIDCQT--------G-S 140 (767)
Q Consensus 72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~L~gH~~--sVtsVaFSpDG~~LASgs~DGtVrVWDl~t--------g-~ 140 (767)
...+.+......|+.+.+.|.|-+|.....+..++.. .-....|.+- ...++.-.|-|+.. | .
T Consensus 4 v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~di~~r~~~~~~~gf~ 77 (395)
T PF08596_consen 4 VTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRF------SLNNSPGKLTDISDRAPPSLKEGFL 77 (395)
T ss_dssp EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--------GGGSS-SEEE-GGG--TT-SEEEE
T ss_pred EEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccc------cccCCCcceEEehhhCCcccccccC
Confidence 4556667788888888888888888876654333111 1111222110 11122333344432 1 2
Q ss_pred EEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec---------CCCCeEEEEEcC-----CC---
Q 004217 141 CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD---------FYRPIASIAFHA-----SG--- 203 (767)
Q Consensus 141 ~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~---------h~~~VtsVafSP-----dG--- 203 (767)
+...+....+.|++++.+ |-.+++.|..+|.+.|.|+|....+..-. ....++++.|.. |+
T Consensus 78 P~~l~~~~~g~vtal~~S--~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySS 155 (395)
T PF08596_consen 78 PLTLLDAKQGPVTALKNS--DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSS 155 (395)
T ss_dssp EEEEE---S-SEEEEEE---BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEE
T ss_pred chhheeccCCcEeEEecC--CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccc
Confidence 334445568899999986 57899999999999999999888776621 234677888762 33
Q ss_pred CEEEEEECCc-EEEEEcC
Q 004217 204 ELLAVASGHK-LYIWRYN 220 (767)
Q Consensus 204 ~~LAsgSdd~-V~VWDl~ 220 (767)
-.+++|.+.+ +.+|.+.
T Consensus 156 i~L~vGTn~G~v~~fkIl 173 (395)
T PF08596_consen 156 ICLLVGTNSGNVLTFKIL 173 (395)
T ss_dssp EEEEEEETTSEEEEEEEE
T ss_pred eEEEEEeCCCCEEEEEEe
Confidence 2677777655 8888764
No 393
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=89.10 E-value=0.98 Score=35.83 Aligned_cols=34 Identities=21% Similarity=0.246 Sum_probs=29.7
Q ss_pred CCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeE
Q 004217 149 RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC 184 (767)
Q Consensus 149 ~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~ 184 (767)
...|..++|+| ..++++.+..||.|.++.+ +++.
T Consensus 11 ~~~v~~~~w~P-~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCP-TMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECC-CCCEEEEEECCCeEEEEEC-CCcC
Confidence 45689999999 8999999999999999998 5543
No 394
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=89.07 E-value=1.2 Score=46.80 Aligned_cols=104 Identities=14% Similarity=0.144 Sum_probs=61.0
Q ss_pred CCeEEEEeCCCeEEEEECCCC-eEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec-CC-CCeE
Q 004217 119 GKTLASTHGDHTVKIIDCQTG-SCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FY-RPIA 195 (767)
Q Consensus 119 G~~LASgs~DGtVrVWDl~tg-~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~-h~-~~Vt 195 (767)
+..+++|+.||.|.+|+..-- .....+..-...|.++--.-.++.+..+++.|+.|+.|++.-.+.+.... |. .++.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e 149 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE 149 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence 467889999999999987621 11111111122232222122245589999999999999999887776654 33 3444
Q ss_pred EEEEcCCCCEEEEE--ECCc-EEEEEcCCC
Q 004217 196 SIAFHASGELLAVA--SGHK-LYIWRYNMR 222 (767)
Q Consensus 196 sVafSPdG~~LAsg--Sdd~-V~VWDl~t~ 222 (767)
....+..+++++.+ |.+. ++.|++...
T Consensus 150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 150 ELIVVGSDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred eeEEecCCceEEeeccccchhhhhcchhhh
Confidence 44444455555555 3333 666666543
No 395
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=88.83 E-value=5.6 Score=45.61 Aligned_cols=147 Identities=15% Similarity=0.139 Sum_probs=75.8
Q ss_pred CeEEEEECCCCCeEEEEeC--------------------CCeEEEEECCCCeEEEEEccCC--CCcEEEEEc--cCCCcE
Q 004217 109 STIAAAFSPDGKTLASTHG--------------------DHTVKIIDCQTGSCLKVLHGHR--RTPWVVRFH--PLNPTI 164 (767)
Q Consensus 109 sVtsVaFSpDG~~LASgs~--------------------DGtVrVWDl~tg~~l~~L~gH~--~~V~sLafs--P~dg~l 164 (767)
--.++-|.|..+.++|... ..++.+||+.+.+.++++.--. ..+..|+|. |....-
T Consensus 182 ~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~g 261 (461)
T PF05694_consen 182 FGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYG 261 (461)
T ss_dssp ----EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EE
T ss_pred CCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccce
Confidence 4567778887778877643 3679999999999998885322 246677775 422334
Q ss_pred EEEEeCCCeEEEEEC-CCCeEEEe----ecC------------------CCCeEEEEEcCCCCEEEEEEC--CcEEEEEc
Q 004217 165 IASGSLDHEVRLWNA-STAECIGS----RDF------------------YRPIASIAFHASGELLAVASG--HKLYIWRY 219 (767)
Q Consensus 165 LaSgS~DGtVrIWDl-~tg~~i~~----l~h------------------~~~VtsVafSPdG~~LAsgSd--d~V~VWDl 219 (767)
|+.+....+|..|-- ..++.... +.. ..-|+.|..|.|.++|.++.- +.|+-||+
T Consensus 262 Fvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDI 341 (461)
T PF05694_consen 262 FVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDI 341 (461)
T ss_dssp EEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-
T ss_pred EEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEec
Confidence 555555666666643 34432211 110 234789999999999999983 44999999
Q ss_pred CCCccccCC-eEEec---------------CCCCeEEEEEccCCCeEEEEEe
Q 004217 220 NMREETSSP-RIVLR---------------TRRSLRAVHFHPHAAPLLLTAE 255 (767)
Q Consensus 220 ~t~~~~~~~-~~l~~---------------h~~~VtsVaFSPDG~~LlaSgs 255 (767)
......+.. ....+ -.+...-|..|-||++|.+|.+
T Consensus 342 SDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 342 SDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred CCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence 875532211 01111 1223478999999999999888
No 396
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=88.80 E-value=4.1 Score=43.33 Aligned_cols=102 Identities=14% Similarity=0.105 Sum_probs=61.2
Q ss_pred CcEEEEEccCCCcEEEEEe-CCCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEECCc-EEEEE-cCCCccccC
Q 004217 151 TPWVVRFHPLNPTIIASGS-LDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHK-LYIWR-YNMREETSS 227 (767)
Q Consensus 151 ~V~sLafsP~dg~lLaSgS-~DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSdd~-V~VWD-l~t~~~~~~ 227 (767)
.+...++++ +++.++... .++.-.+|-...+...........+....|+++|...++...+. .+++. ...++...
T Consensus 25 ~~~s~AvS~-dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~- 102 (253)
T PF10647_consen 25 DVTSPAVSP-DGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEP- 102 (253)
T ss_pred cccceEECC-CCCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCccee-
Confidence 678899999 666655544 33333444444444333332445788889999988776665443 55553 33332211
Q ss_pred CeEEecC--CCCeEEEEEccCCCeEEEEEe
Q 004217 228 PRIVLRT--RRSLRAVHFHPHAAPLLLTAE 255 (767)
Q Consensus 228 ~~~l~~h--~~~VtsVaFSPDG~~LlaSgs 255 (767)
...... ...|.++.+||||..++....
T Consensus 103 -~~v~~~~~~~~I~~l~vSpDG~RvA~v~~ 131 (253)
T PF10647_consen 103 -VEVDWPGLRGRITALRVSPDGTRVAVVVE 131 (253)
T ss_pred -EEecccccCCceEEEEECCCCcEEEEEEe
Confidence 111111 128999999999999887653
No 397
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.40 E-value=28 Score=44.20 Aligned_cols=120 Identities=13% Similarity=0.138 Sum_probs=79.0
Q ss_pred eCCCeEEEEeCCCC---------CCCC------CCCCeEEEEECCCC-CeEEEEeCCCeEEEEECCCCeE-EEEEccCCC
Q 004217 88 VEAESLHHLRPKYC---------PLSP------PPRSTIAAAFSPDG-KTLASTHGDHTVKIIDCQTGSC-LKVLHGHRR 150 (767)
Q Consensus 88 s~DgsIrlWd~~t~---------~L~g------H~~sVtsVaFSpDG-~~LASgs~DGtVrVWDl~tg~~-l~~L~gH~~ 150 (767)
+++..|..+|++.- .|.. ...-..++.|+|.- ...+.+..|+.|+|.-+..-.. ...+ .-+.
T Consensus 121 sng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~-p~t~ 199 (1405)
T KOG3630|consen 121 SNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSF-PVTN 199 (1405)
T ss_pred cCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhccc-Cccc
Confidence 34456888888642 1222 23346788999843 3456677788888877653222 2222 2456
Q ss_pred CcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEee-----cCCCCeEEEEEcCCCCEEEEEE
Q 004217 151 TPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-----DFYRPIASIAFHASGELLAVAS 210 (767)
Q Consensus 151 ~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l-----~h~~~VtsVafSPdG~~LAsgS 210 (767)
.+++++|+| .++.++.|-..|++.-|... .+....+ .....|.+|+|-....++++=+
T Consensus 200 ~~Tav~WSp-rGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy~ 262 (1405)
T KOG3630|consen 200 SQTAVLWSP-RGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFLVVYG 262 (1405)
T ss_pred ceeeEEecc-ccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEEEEec
Confidence 689999999 89999999999999988653 3322222 2357899999988877776543
No 398
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=88.36 E-value=21 Score=42.24 Aligned_cols=55 Identities=13% Similarity=0.139 Sum_probs=36.2
Q ss_pred CeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEE-CCcEEEEEcCCCcccc
Q 004217 172 HEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETS 226 (767)
Q Consensus 172 GtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgS-dd~V~VWDl~t~~~~~ 226 (767)
+.|.-+|+.+++.........+...-...-.|.+++.+. ++.++.+|.++++.+.
T Consensus 441 g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw 496 (527)
T TIGR03075 441 GSLIAWDPITGKIVWEHKEDFPLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEELW 496 (527)
T ss_pred eeEEEEeCCCCceeeEecCCCCCCCcceEECCcEEEEECCCCeEEEEECCCCCEeE
Confidence 468888999998887765433321111122445666666 4459999999999876
No 399
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=88.34 E-value=18 Score=42.88 Aligned_cols=73 Identities=14% Similarity=0.071 Sum_probs=47.9
Q ss_pred CeEEEEECCCCeEEEEEccCCCCcEE-EEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCCCCeEE--EEEcCCCC
Q 004217 129 HTVKIIDCQTGSCLKVLHGHRRTPWV-VRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIAS--IAFHASGE 204 (767)
Q Consensus 129 GtVrVWDl~tg~~l~~L~gH~~~V~s-LafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~~Vts--VafSPdG~ 204 (767)
+.|.-+|+.+|+.+..........-. +.. .+.+++.+..||.++.+|.++|+.+..+.....+.. +.|.-+|+
T Consensus 441 g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t---~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~~~~a~P~ty~~~G~ 516 (527)
T TIGR03075 441 GSLIAWDPITGKIVWEHKEDFPLWGGVLAT---AGDLVFYGTLEGYFKAFDAKTGEELWKFKTGSGIVGPPVTYEQDGK 516 (527)
T ss_pred eeEEEEeCCCCceeeEecCCCCCCCcceEE---CCcEEEEECCCCeEEEEECCCCCEeEEEeCCCCceecCEEEEeCCE
Confidence 45788888888877766532221112 222 345777888899999999999999988765443332 33344665
No 400
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=88.22 E-value=33 Score=38.36 Aligned_cols=146 Identities=19% Similarity=0.173 Sum_probs=86.2
Q ss_pred CCEEEEEeCCCeEEEEeCCC-CC--------CCCCCCCeE-EEEECCCCCeEEEEeCCCeEEEEECCCCeE--EEEEccC
Q 004217 81 RRGLASWVEAESLHHLRPKY-CP--------LSPPPRSTI-AAAFSPDGKTLASTHGDHTVKIIDCQTGSC--LKVLHGH 148 (767)
Q Consensus 81 g~~LaSgs~DgsIrlWd~~t-~~--------L~gH~~sVt-sVaFSpDG~~LASgs~DGtVrVWDl~tg~~--l~~L~gH 148 (767)
.+.+.+-+.||++....+.. ++ +..-.+++. .-+++.++..++--+.+|.|+--|+..... ...+.--
T Consensus 147 ~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~ 226 (342)
T PF06433_consen 147 NRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLL 226 (342)
T ss_dssp TTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS
T ss_pred CCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCccccc
Confidence 34566777777777666652 21 222222222 334455555566678889999888875532 2222110
Q ss_pred ----------CCCcEEEEEccCCCcEEEEEe--CC-------CeEEEEECCCCeEEEeecCCCCeEEEEEcCCCC-EEEE
Q 004217 149 ----------RRTPWVVRFHPLNPTIIASGS--LD-------HEVRLWNASTAECIGSRDFYRPIASIAFHASGE-LLAV 208 (767)
Q Consensus 149 ----------~~~V~sLafsP~dg~lLaSgS--~D-------GtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~-~LAs 208 (767)
.+.-.-+++++..+++++.-. .+ ..|.++|+.+++.+..+....++.+|..+.+.+ +|++
T Consensus 227 t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~ 306 (342)
T PF06433_consen 227 TDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYA 306 (342)
T ss_dssp -HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEE
T ss_pred CccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEE
Confidence 122334778873344433321 11 258888999999999988777888999999887 6655
Q ss_pred EE-CC-cEEEEEcCCCcccc
Q 004217 209 AS-GH-KLYIWRYNMREETS 226 (767)
Q Consensus 209 gS-dd-~V~VWDl~t~~~~~ 226 (767)
.+ .+ .|.+||..+++.+.
T Consensus 307 ~~~~~~~l~v~D~~tGk~~~ 326 (342)
T PF06433_consen 307 LSAGDGTLDVYDAATGKLVR 326 (342)
T ss_dssp EETTTTEEEEEETTT--EEE
T ss_pred EcCCCCeEEEEeCcCCcEEe
Confidence 44 33 49999999998765
No 401
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=87.67 E-value=82 Score=39.09 Aligned_cols=149 Identities=16% Similarity=0.174 Sum_probs=95.5
Q ss_pred CCCCCeEEEEEC---C--C--CCeEEEEeCCCeEEEEE------CCC---------CeEEEEEcc---CCCCcEEEEEcc
Q 004217 105 PPPRSTIAAAFS---P--D--GKTLASTHGDHTVKIID------CQT---------GSCLKVLHG---HRRTPWVVRFHP 159 (767)
Q Consensus 105 gH~~sVtsVaFS---p--D--G~~LASgs~DGtVrVWD------l~t---------g~~l~~L~g---H~~~V~sLafsP 159 (767)
.-..+|..|+|. . + .++|++ -....+.|+. +.. ..++..+.. -......++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~V-rt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAV-RTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEE-EcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 355689999998 2 2 235544 4445677776 111 123344431 123567899999
Q ss_pred CCCcEEEEEeCCCeEEEEECCCCe------EEEeecC----------CCCeEEEEEcCCCCEEEEEECCcEEEEEcCCCc
Q 004217 160 LNPTIIASGSLDHEVRLWNASTAE------CIGSRDF----------YRPIASIAFHASGELLAVASGHKLYIWRYNMRE 223 (767)
Q Consensus 160 ~dg~lLaSgS~DGtVrIWDl~tg~------~i~~l~h----------~~~VtsVafSPdG~~LAsgSdd~V~VWDl~t~~ 223 (767)
.+...||.....|...|||+.... ....... .+....+.|.++-..|++++...+.++|+++..
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~~l~~~d~~~~~ 235 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRSKLMLIDFESNW 235 (765)
T ss_pred CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCCceEEEECCCCC
Confidence 888999999999999999992111 1111111 123347889988889999988889999999876
Q ss_pred cccCCeEEecCCCCeEEEEEccC--CCeEEEEEe
Q 004217 224 ETSSPRIVLRTRRSLRAVHFHPH--AAPLLLTAE 255 (767)
Q Consensus 224 ~~~~~~~l~~h~~~VtsVaFSPD--G~~LlaSgs 255 (767)
.... .........|..+.-+|+ +..++.|..
T Consensus 236 ~~~~-l~~~~~~~~IlDv~~~~~~~~~~FiLTs~ 268 (765)
T PF10214_consen 236 QTEY-LVTAKTWSWILDVKRSPDNPSHVFILTSK 268 (765)
T ss_pred ccch-hccCCChhheeeEEecCCccceEEEEecC
Confidence 5321 223345578999999988 444444444
No 402
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=86.78 E-value=3.8 Score=46.94 Aligned_cols=85 Identities=15% Similarity=0.243 Sum_probs=59.6
Q ss_pred CCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEE-EEEccCCCc-----------------EE
Q 004217 104 SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWV-VRFHPLNPT-----------------II 165 (767)
Q Consensus 104 ~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~s-LafsP~dg~-----------------lL 165 (767)
....+.+.++..+|++++.|+...=|.|.|+|+.++..++.+||.++.=.. +.......+ ++
T Consensus 304 ~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~Lv 383 (415)
T PF14655_consen 304 PDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLV 383 (415)
T ss_pred ccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEE
Confidence 345667899999999998888877799999999999999999987764221 111110111 23
Q ss_pred EEEeCCCeEEEEECCCCeEEEee
Q 004217 166 ASGSLDHEVRLWNASTAECIGSR 188 (767)
Q Consensus 166 aSgS~DGtVrIWDl~tg~~i~~l 188 (767)
+-.-.-|.|.||+++.|..+..+
T Consensus 384 IyaprRg~lEvW~~~~g~Rv~a~ 406 (415)
T PF14655_consen 384 IYAPRRGILEVWSMRQGPRVAAF 406 (415)
T ss_pred EEeccCCeEEEEecCCCCEEEEE
Confidence 33556677888888877766554
No 403
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=86.51 E-value=7.2 Score=42.52 Aligned_cols=125 Identities=14% Similarity=0.105 Sum_probs=76.9
Q ss_pred CeEEEEeCCCC-----CC-----CCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCe-EEEEEc-cCCCCcEEEEEc
Q 004217 91 ESLHHLRPKYC-----PL-----SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS-CLKVLH-GHRRTPWVVRFH 158 (767)
Q Consensus 91 gsIrlWd~~t~-----~L-----~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~-~l~~L~-gH~~~V~sLafs 158 (767)
|.|.++++... ++ ....++|++++-- +++ |+.+. ++.|.+|++...+ ....-. ...-.+.++...
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~ 138 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF 138 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc
Confidence 67777777662 21 1456789998877 444 54444 3689999998777 433222 122356666654
Q ss_pred cCCCcEEEEEeCCCeEEEEECCC-CeEEEee---cCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCC
Q 004217 159 PLNPTIIASGSLDHEVRLWNAST-AECIGSR---DFYRPIASIAFHASGELLAVASGHK-LYIWRYNM 221 (767)
Q Consensus 159 P~dg~lLaSgS~DGtVrIWDl~t-g~~i~~l---~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t 221 (767)
+++++.|.....+.++.++. ...+..+ .....++++.|-++++.++++..++ |.++....
T Consensus 139 ---~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 139 ---KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp ---TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred ---ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence 46899998888888875443 2322222 2455688888987777777777555 88887763
No 404
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=86.28 E-value=31 Score=39.48 Aligned_cols=128 Identities=16% Similarity=0.159 Sum_probs=74.3
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCCCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccC-CCCcEEEEEc
Q 004217 80 ARRGLASWVEAESLHHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGH-RRTPWVVRFH 158 (767)
Q Consensus 80 ~g~~LaSgs~DgsIrlWd~~t~~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH-~~~V~sLafs 158 (767)
+....+....++.+.+.+.....-....+++..+++||+|++||.-..+|.+.|.+.+-.+.+..+... ......+.|+
T Consensus 189 ~~~~~i~~~~g~~i~~i~~~~~~~i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WC 268 (410)
T PF04841_consen 189 DRVVEILLANGETIYIIDENSFKQIDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWC 268 (410)
T ss_pred CcceEEEEecCCEEEEEEccccccccCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEE
Confidence 344444455566666444332211223468999999999999999999999999987655555555433 3566788887
Q ss_pred cCCCcEEEEEeCCCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEECCcEEEEEcCCCc
Q 004217 159 PLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMRE 223 (767)
Q Consensus 159 P~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSdd~V~VWDl~t~~ 223 (767)
- +...++.- ...|.+.... ... +.|.-++..++..--|+|+|..-...+
T Consensus 269 G-~dav~l~~--~~~l~lvg~~----------~~~---~~~~~~~~~~l~~E~DG~riit~~~~~ 317 (410)
T PF04841_consen 269 G-NDAVVLSW--EDELLLVGPD----------GDS---ISFWYDGPVILVSEIDGVRIITSTSHE 317 (410)
T ss_pred C-CCcEEEEe--CCEEEEECCC----------CCc---eEEeccCceEEeccCCceEEEeCCceE
Confidence 6 32222221 2334433311 111 344444554555556778888544443
No 405
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=86.23 E-value=15 Score=41.94 Aligned_cols=182 Identities=12% Similarity=0.022 Sum_probs=94.4
Q ss_pred eEEEEEEcCCCEEEEEeCCCeEEEEeCCCCC------CC------CCCCCeEEEEECC-----CC---CeEEEEeCCCeE
Q 004217 72 QIFEAGRDARRGLASWVEAESLHHLRPKYCP------LS------PPPRSTIAAAFSP-----DG---KTLASTHGDHTV 131 (767)
Q Consensus 72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~------L~------gH~~sVtsVaFSp-----DG---~~LASgs~DGtV 131 (767)
..+++. .+-++++.+.++|.+.+.|..... +. .....|+++.|+- |+ -.|++|...|.+
T Consensus 89 vtal~~-S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v 167 (395)
T PF08596_consen 89 VTALKN-SDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNV 167 (395)
T ss_dssp EEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEE
T ss_pred EeEEec-CCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCE
Confidence 333444 577889999999999999996541 11 2345688899873 33 368899999999
Q ss_pred EEEECC--C-CeEE----EEEccCCCCcEEEE-EccCCC-------------------cEEEEEeCCCeEEEEECCCCeE
Q 004217 132 KIIDCQ--T-GSCL----KVLHGHRRTPWVVR-FHPLNP-------------------TIIASGSLDHEVRLWNASTAEC 184 (767)
Q Consensus 132 rVWDl~--t-g~~l----~~L~gH~~~V~sLa-fsP~dg-------------------~lLaSgS~DGtVrIWDl~tg~~ 184 (767)
.+|.+. . +... .....+.+.|..|. |+.+++ +-++....+..+|++...+.+.
T Consensus 168 ~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~ 247 (395)
T PF08596_consen 168 LTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKG 247 (395)
T ss_dssp EEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---E
T ss_pred EEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCCCcc
Confidence 999874 1 2222 22234667776665 432111 1234444577899999998877
Q ss_pred EEeecCC-CCeEEEEEc-----CCCCEEEEEEC-CcEEEEEcCCCccccCCeEE-ecCCCCeEEEEEccCCCeEEEEE
Q 004217 185 IGSRDFY-RPIASIAFH-----ASGELLAVASG-HKLYIWRYNMREETSSPRIV-LRTRRSLRAVHFHPHAAPLLLTA 254 (767)
Q Consensus 185 i~~l~h~-~~VtsVafS-----PdG~~LAsgSd-d~V~VWDl~t~~~~~~~~~l-~~h~~~VtsVaFSPDG~~LlaSg 254 (767)
..+.... .....+.+- ..+..|++-.. +.|+++.+..-+++...... ......+....|+++|+.++.++
T Consensus 248 ~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~g 325 (395)
T PF08596_consen 248 AHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTG 325 (395)
T ss_dssp EEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-EEEE-S
T ss_pred cceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCCCEEEEeC
Confidence 6664322 233344452 23445555554 45999999887765511111 01123455677899999665554
No 406
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=85.64 E-value=53 Score=38.30 Aligned_cols=52 Identities=15% Similarity=0.282 Sum_probs=35.8
Q ss_pred CCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeE--EEEE----c-cCCCCcEEEEEcc
Q 004217 108 RSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSC--LKVL----H-GHRRTPWVVRFHP 159 (767)
Q Consensus 108 ~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~--l~~L----~-gH~~~V~sLafsP 159 (767)
..-+.|+|.|||++|++--..|.|++++-.++.. +..+ . .-.+....|+|+|
T Consensus 30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~P 88 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHP 88 (454)
T ss_pred CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECC
Confidence 3467899999998777655469999998655432 2111 1 1246688999998
No 407
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=85.44 E-value=23 Score=37.80 Aligned_cols=143 Identities=10% Similarity=0.038 Sum_probs=83.5
Q ss_pred CCCeEEEEECCCCCeEEEEeCC---------CeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEE
Q 004217 107 PRSTIAAAFSPDGKTLASTHGD---------HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLW 177 (767)
Q Consensus 107 ~~sVtsVaFSpDG~~LASgs~D---------GtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIW 177 (767)
+...++-..+|+|++++-.-.| |.++.|-.. ..+..+...-.--..++|+.+...+.+.-+.+-+|.-|
T Consensus 108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~ 185 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG--HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAY 185 (310)
T ss_pred hcccccCccCCCCceeeeeeccccccccccccEEEEeccC--CCceeeehhccCCccccccccCcEEEEEccCceEEeee
Confidence 4456777889999984322112 334444321 11222222333446788987444556667788889888
Q ss_pred E--CCCCeEE-----EeecC----CC-CeEEEEEcCCCCEEEEEEC-CcEEEEEcCCCccccCCeEEecCCCCeEEEEEc
Q 004217 178 N--ASTAECI-----GSRDF----YR-PIASIAFHASGELLAVASG-HKLYIWRYNMREETSSPRIVLRTRRSLRAVHFH 244 (767)
Q Consensus 178 D--l~tg~~i-----~~l~h----~~-~VtsVafSPdG~~LAsgSd-d~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFS 244 (767)
| ..+|... ..+.. .. ..-.++.+-+|.+.++.-. ++|...|..+++.+. .+.-....|++++|-
T Consensus 186 dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~---eiklPt~qitsccFg 262 (310)
T KOG4499|consen 186 DYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILL---EIKLPTPQITSCCFG 262 (310)
T ss_pred ecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEE---EEEcCCCceEEEEec
Confidence 8 5555432 22221 11 1223555667876666554 459999999999765 444457889999997
Q ss_pred cC-CCeEEEEE
Q 004217 245 PH-AAPLLLTA 254 (767)
Q Consensus 245 PD-G~~LlaSg 254 (767)
-. -..+.+++
T Consensus 263 Gkn~d~~yvT~ 273 (310)
T KOG4499|consen 263 GKNLDILYVTT 273 (310)
T ss_pred CCCccEEEEEe
Confidence 44 23344443
No 408
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=85.35 E-value=44 Score=35.06 Aligned_cols=135 Identities=14% Similarity=0.189 Sum_probs=84.3
Q ss_pred CEEEEEeCCCeEEEEeCCCC--CCC---CCCCCeEEEEECCCCCeEEEEeCC------CeEEEE---ECC--CCeEEE-E
Q 004217 82 RGLASWVEAESLHHLRPKYC--PLS---PPPRSTIAAAFSPDGKTLASTHGD------HTVKII---DCQ--TGSCLK-V 144 (767)
Q Consensus 82 ~~LaSgs~DgsIrlWd~~t~--~L~---gH~~sVtsVaFSpDG~~LASgs~D------GtVrVW---Dl~--tg~~l~-~ 144 (767)
+.|+.+.....|.+|++... ++. .--+.|..+.++..|++|++-=.+ ..+|+| +.. ...++. .
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~vR 108 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRVR 108 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEEE
Confidence 66656577888999998733 211 233789999999999999985321 256775 222 111111 2
Q ss_pred EccC---------------------CCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeE-E---Eeec-------C--
Q 004217 145 LHGH---------------------RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC-I---GSRD-------F-- 190 (767)
Q Consensus 145 L~gH---------------------~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~-i---~~l~-------h-- 190 (767)
+-|| ...+.+++..|..|++++.+ ++++.||.+..... . ..++ +
T Consensus 109 iaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~--~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~ 186 (215)
T PF14761_consen 109 IAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC--GNKLVLFTLKYQTIQSEKFSFLDFERSLIDHID 186 (215)
T ss_pred EcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc--CCEEEEEEEEEEEEecccccEEechhhhhheec
Confidence 2222 34678899999788877753 67899998765443 1 1111 1
Q ss_pred CCCeEEEEEcCCCCEEEEEECCcEEEEEcC
Q 004217 191 YRPIASIAFHASGELLAVASGHKLYIWRYN 220 (767)
Q Consensus 191 ~~~VtsVafSPdG~~LAsgSdd~V~VWDl~ 220 (767)
.-....++| .+.|+|..++..++++.+.
T Consensus 187 ~~~p~~v~i--c~~yiA~~s~~ev~Vlkl~ 214 (215)
T PF14761_consen 187 NFKPTQVAI--CEGYIAVMSDLEVLVLKLE 214 (215)
T ss_pred CceEEEEEE--EeeEEEEecCCEEEEEEEe
Confidence 112344555 3679999998888887653
No 409
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=85.13 E-value=5.1 Score=41.86 Aligned_cols=62 Identities=13% Similarity=0.191 Sum_probs=47.7
Q ss_pred CCcEEEEEeCCCeEEEEECCCCeEEEee---------------cCCCCeEEEEEcCCCCEEEEEECCcEEEEEcCCC
Q 004217 161 NPTIIASGSLDHEVRLWNASTAECIGSR---------------DFYRPIASIAFHASGELLAVASGHKLYIWRYNMR 222 (767)
Q Consensus 161 dg~lLaSgS~DGtVrIWDl~tg~~i~~l---------------~h~~~VtsVafSPdG~~LAsgSdd~V~VWDl~t~ 222 (767)
++++++....+|.+++||+.+++++..- .....|..+.++.+|.-|++-+++..+.||..-+
T Consensus 21 ~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L~ 97 (219)
T PF07569_consen 21 NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDLG 97 (219)
T ss_pred CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccccc
Confidence 6788999999999999999998876542 1335677788888888777777777888876544
No 410
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=84.87 E-value=21 Score=38.09 Aligned_cols=92 Identities=16% Similarity=0.143 Sum_probs=66.0
Q ss_pred eEEEEECCCCCeEEE-EeCCCeEEEEE--CCCCe-----EEEEEcc----CCCCcEEEEEccCCCcEEEEEeCCCeEEEE
Q 004217 110 TIAAAFSPDGKTLAS-THGDHTVKIID--CQTGS-----CLKVLHG----HRRTPWVVRFHPLNPTIIASGSLDHEVRLW 177 (767)
Q Consensus 110 VtsVaFSpDG~~LAS-gs~DGtVrVWD--l~tg~-----~l~~L~g----H~~~V~sLafsP~dg~lLaSgS~DGtVrIW 177 (767)
-+.++|+.|.+.+.. -+.+-+|.-|| +.+|. .+..++. ..-....++..- ++++++++-..++|...
T Consensus 160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~-eG~L~Va~~ng~~V~~~ 238 (310)
T KOG4499|consen 160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDT-EGNLYVATFNGGTVQKV 238 (310)
T ss_pred CccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEcc-CCcEEEEEecCcEEEEE
Confidence 357899988877654 46678888888 66653 2333332 112234455566 78999999999999999
Q ss_pred ECCCCeEEEeec-CCCCeEEEEEcCC
Q 004217 178 NASTAECIGSRD-FYRPIASIAFHAS 202 (767)
Q Consensus 178 Dl~tg~~i~~l~-h~~~VtsVafSPd 202 (767)
|..+|+.+.++. ....|++++|--.
T Consensus 239 dp~tGK~L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 239 DPTTGKILLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred CCCCCcEEEEEEcCCCceEEEEecCC
Confidence 999999999876 4678999999643
No 411
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=84.85 E-value=34 Score=39.17 Aligned_cols=139 Identities=12% Similarity=0.033 Sum_probs=78.9
Q ss_pred CeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEE-E-EEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCe---
Q 004217 109 STIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCL-K-VLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAE--- 183 (767)
Q Consensus 109 sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l-~-~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~--- 183 (767)
....+..++||.+++.+..-...+-||- |... . .-......+..+.|.+ ++.+++.+ .+|.+ +|....++
T Consensus 240 sf~~v~~~~dG~~~~vg~~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~-dg~l~l~g-~~G~l-~~S~d~G~~~~ 314 (398)
T PLN00033 240 TFSTVNRSPDGDYVAVSSRGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRA-DGGLWLLT-RGGGL-YVSKGTGLTEE 314 (398)
T ss_pred ceeeEEEcCCCCEEEEECCccEEEecCC--CCcceEEecCCCccceeeeeEcC-CCCEEEEe-CCceE-EEecCCCCccc
Confidence 3455677788887777665433344542 3221 1 1123345688999988 77777655 55654 34444443
Q ss_pred --EEEeec---CCCCeEEEEEcCCCCEEEEEECCcEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEE
Q 004217 184 --CIGSRD---FYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLT 253 (767)
Q Consensus 184 --~i~~l~---h~~~VtsVafSPdG~~LAsgSdd~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaS 253 (767)
...... ....+..+.|.+++..+++|..+.+... ...++..........-...++.+.|.++++.++++
T Consensus 315 ~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s-~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G 388 (398)
T PLN00033 315 DFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRS-TDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG 388 (398)
T ss_pred ccceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEe-CCCCcceeEccccCCCCcceeEEEEcCCCceEEEe
Confidence 222222 2235889999999988888866655444 34443322111112224578899998887755443
No 412
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=84.63 E-value=14 Score=44.61 Aligned_cols=105 Identities=11% Similarity=0.165 Sum_probs=67.5
Q ss_pred CCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEe--ecCCCCeEEEEEc--CCCC-EEEEEECCcEEEEEc-----
Q 004217 150 RTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS--RDFYRPIASIAFH--ASGE-LLAVASGHKLYIWRY----- 219 (767)
Q Consensus 150 ~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~--l~h~~~VtsVafS--PdG~-~LAsgSdd~V~VWDl----- 219 (767)
..+.-+.-+. -++..+.-+...++.|||.+.+..... +...+.|..+.|. |+|+ .|++|-.+.|.+|--
T Consensus 30 ~~~~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 30 SNPSLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred CCcceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence 3444555555 445555555566899999999886655 3458899999985 5776 566666777888743
Q ss_pred CCCcccc-C--CeEEecC-CCCeEEEEEccCCCeEEEEEe
Q 004217 220 NMREETS-S--PRIVLRT-RRSLRAVHFHPHAAPLLLTAE 255 (767)
Q Consensus 220 ~t~~~~~-~--~~~l~~h-~~~VtsVaFSPDG~~LlaSgs 255 (767)
....... . ...+..+ ..+|.+..|.+||..++++|.
T Consensus 109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGN 148 (631)
T PF12234_consen 109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGN 148 (631)
T ss_pred hcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeCC
Confidence 1111111 0 1112334 368999999999997777765
No 413
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=84.38 E-value=47 Score=36.64 Aligned_cols=144 Identities=15% Similarity=0.161 Sum_probs=84.0
Q ss_pred CCCeEEEEECCCCCeEEEEeCCCe------EEEEECCC--C--eEE-----EEEccCCC--------CcEEEEEccCCCc
Q 004217 107 PRSTIAAAFSPDGKTLASTHGDHT------VKIIDCQT--G--SCL-----KVLHGHRR--------TPWVVRFHPLNPT 163 (767)
Q Consensus 107 ~~sVtsVaFSpDG~~LASgs~DGt------VrVWDl~t--g--~~l-----~~L~gH~~--------~V~sLafsP~dg~ 163 (767)
-+.+..|.+.+++..+++.++++. +..+++.. + ..+ ..++.-.+ ..-+|++.+ ++.
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~-~g~ 97 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPP-DGS 97 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEec-CCC
Confidence 456788888865556666677666 55555433 1 111 11222112 344788855 888
Q ss_pred EEEEEeCC------CeEEEEECCCCeEEEee----------------cCCCCeEEEEEcCCCCEEEEEEC------C--c
Q 004217 164 IIASGSLD------HEVRLWNASTAECIGSR----------------DFYRPIASIAFHASGELLAVASG------H--K 213 (767)
Q Consensus 164 lLaSgS~D------GtVrIWDl~tg~~i~~l----------------~h~~~VtsVafSPdG~~LAsgSd------d--~ 213 (767)
++++.-.+ ..|+.+|.. |+.+..+ ..+....+++++|+|+.|+++.. + .
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~ 176 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRA 176 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccc
Confidence 88887777 788888876 5554332 13456789999999996655531 1 1
Q ss_pred -------EEEEEc--CCCc-cccCCeEEec------CCCCeEEEEEccCCCeEEE
Q 004217 214 -------LYIWRY--NMRE-ETSSPRIVLR------TRRSLRAVHFHPHAAPLLL 252 (767)
Q Consensus 214 -------V~VWDl--~t~~-~~~~~~~l~~------h~~~VtsVaFSPDG~~Lla 252 (767)
++++.+ .+.. .......... ....|..+.+-+++++|+.
T Consensus 177 ~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 177 NPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred ccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 455544 4312 1110111111 3567899999999996554
No 414
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=83.44 E-value=20 Score=34.90 Aligned_cols=110 Identities=12% Similarity=0.085 Sum_probs=70.1
Q ss_pred EEECCCCCeEEEEeCCCeEEEEECCCC--------eEEEEEccCCCCcEEEEEcc---C-CCcEEEEEeCCCeEEEEECC
Q 004217 113 AAFSPDGKTLASTHGDHTVKIIDCQTG--------SCLKVLHGHRRTPWVVRFHP---L-NPTIIASGSLDHEVRLWNAS 180 (767)
Q Consensus 113 VaFSpDG~~LASgs~DGtVrVWDl~tg--------~~l~~L~gH~~~V~sLafsP---~-dg~lLaSgS~DGtVrIWDl~ 180 (767)
-+|......|++++.-++|.|++.... ..+..|. -...|++++-.+ . +.+.|+.|+ ...+..||+.
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~ 81 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVE 81 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcc
Confidence 345555556777777788888876532 2233333 345677775433 2 345566654 5679999999
Q ss_pred CCeEEEeecCCCCeEEEEEcC----CCCEEEEEECCcEEEEEcCCCcc
Q 004217 181 TAECIGSRDFYRPIASIAFHA----SGELLAVASGHKLYIWRYNMREE 224 (767)
Q Consensus 181 tg~~i~~l~h~~~VtsVafSP----dG~~LAsgSdd~V~VWDl~t~~~ 224 (767)
...-+...+....|+++.+-. +..++++|+.-.|.-||....+.
T Consensus 82 ~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~ 129 (136)
T PF14781_consen 82 NNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEI 129 (136)
T ss_pred cCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEE
Confidence 887776666667788887643 33467777666688777665543
No 415
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=83.31 E-value=35 Score=37.61 Aligned_cols=137 Identities=14% Similarity=0.154 Sum_probs=73.6
Q ss_pred EEcCCCEEEEEeCCCeEEEEeCCCCCCC----CCCCCeEEEEECCCCCeEEEEeCCCeEEEEEC-CCCeEEEE--Ec--c
Q 004217 77 GRDARRGLASWVEAESLHHLRPKYCPLS----PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDC-QTGSCLKV--LH--G 147 (767)
Q Consensus 77 ~sd~g~~LaSgs~DgsIrlWd~~t~~L~----gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl-~tg~~l~~--L~--g 147 (767)
-.+++..++.+.....+.-|+.-..... .-...|..+.|++|+.+.+.+ ..|.|+.=+. ...+.... .. .
T Consensus 152 r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~ 230 (302)
T PF14870_consen 152 RSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKT 230 (302)
T ss_dssp E-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS
T ss_pred ECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCccc
Confidence 3467777777766666678876543222 235679999999998776654 8888888872 22222211 11 1
Q ss_pred CCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEee----cCCCCeEEEEEcCCCCEEEEEECCcEEEE
Q 004217 148 HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR----DFYRPIASIAFHASGELLAVASGHKLYIW 217 (767)
Q Consensus 148 H~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l----~h~~~VtsVafSPdG~~LAsgSdd~V~VW 217 (767)
-.-.+..++|.+ +..+.++|+ .|++ +.....|+.-+.. ......+.|.|..+.+-++.|.++-|.-|
T Consensus 231 ~~~~~ld~a~~~-~~~~wa~gg-~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 231 NGYGILDLAYRP-PNEIWAVGG-SGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQDGVLLRY 301 (302)
T ss_dssp --S-EEEEEESS-SS-EEEEES-TT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-STTEEEEE
T ss_pred CceeeEEEEecC-CCCEEEEeC-CccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEEECCCcEEEEe
Confidence 222478899998 667777665 4433 3344555544442 23456888999888788888877665443
No 416
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=83.24 E-value=7 Score=43.58 Aligned_cols=82 Identities=13% Similarity=0.055 Sum_probs=53.3
Q ss_pred eEEEEECCCCCeEEEEeC--------C--CeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEe-CCCeEEEEE
Q 004217 110 TIAAAFSPDGKTLASTHG--------D--HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGS-LDHEVRLWN 178 (767)
Q Consensus 110 VtsVaFSpDG~~LASgs~--------D--GtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS-~DGtVrIWD 178 (767)
-.-+++++..++|+.--. | ..|.++|+.+++.+.++.. ...+.+|..+.++..+|+..+ .++.+.+||
T Consensus 240 ~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D 318 (342)
T PF06433_consen 240 WQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYD 318 (342)
T ss_dssp SS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEE
T ss_pred eeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEe
Confidence 345666665545444211 1 2488889999999988863 235779999985555776554 589999999
Q ss_pred CCCCeEEEeecCCC
Q 004217 179 ASTAECIGSRDFYR 192 (767)
Q Consensus 179 l~tg~~i~~l~h~~ 192 (767)
..+++.++.++.-+
T Consensus 319 ~~tGk~~~~~~~lG 332 (342)
T PF06433_consen 319 AATGKLVRSIEQLG 332 (342)
T ss_dssp TTT--EEEEE---S
T ss_pred CcCCcEEeehhccC
Confidence 99999999876433
No 417
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=83.06 E-value=22 Score=44.09 Aligned_cols=109 Identities=14% Similarity=0.028 Sum_probs=70.8
Q ss_pred CCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCC--------cEEEEEcc---------------CCCcEEEEEeCCCeE
Q 004217 118 DGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRT--------PWVVRFHP---------------LNPTIIASGSLDHEV 174 (767)
Q Consensus 118 DG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~--------V~sLafsP---------------~dg~lLaSgS~DGtV 174 (767)
.+..|+.++.++.|.-.|.++|+.+.++.-.... ...+.+.. .....++.++.|+.+
T Consensus 193 vgg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~L 272 (764)
T TIGR03074 193 VGDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARL 272 (764)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeE
Confidence 3567777888899999999999988877532211 12233321 023477788899999
Q ss_pred EEEECCCCeEEEeecCCCCeE-------------EEEEcC--CCCEEEEEE-----------CCcEEEEEcCCCcccc
Q 004217 175 RLWNASTAECIGSRDFYRPIA-------------SIAFHA--SGELLAVAS-----------GHKLYIWRYNMREETS 226 (767)
Q Consensus 175 rIWDl~tg~~i~~l~h~~~Vt-------------sVafSP--dG~~LAsgS-----------dd~V~VWDl~t~~~~~ 226 (767)
.-.|.++|+.+..+...+.|. .+.-.| .+..+++|+ .+.|+-+|+++++...
T Consensus 273 iALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W 350 (764)
T TIGR03074 273 IALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVW 350 (764)
T ss_pred EEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEee
Confidence 999999999998765444331 111112 123455553 1239999999998766
No 418
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.23 E-value=19 Score=41.52 Aligned_cols=140 Identities=13% Similarity=0.102 Sum_probs=91.3
Q ss_pred EEEEECCCCCeEEEEeCCCeEEEEECCCC---eEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEe
Q 004217 111 IAAAFSPDGKTLASTHGDHTVKIIDCQTG---SCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS 187 (767)
Q Consensus 111 tsVaFSpDG~~LASgs~DGtVrVWDl~tg---~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~ 187 (767)
+.+-|....++|+ +...|.+.=|-+... -++..-...+++|.++.|++ |.+.++.--.|++|.+++....+....
T Consensus 26 ngvFfDDaNkqlf-avrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSl-DnkilAVQR~~~~v~f~nf~~d~~~l~ 103 (657)
T KOG2377|consen 26 NGVFFDDANKQLF-AVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSL-DNKILAVQRTSKTVDFCNFIPDNSQLE 103 (657)
T ss_pred cceeeccCcceEE-EEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEecc-CcceEEEEecCceEEEEecCCCchhhH
Confidence 3444554333333 333444555554321 12222233567999999999 999999999999999999855444333
Q ss_pred ec----C-CCCeEEEEEcCCCCEEEEEECCcEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217 188 RD----F-YRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (767)
Q Consensus 188 l~----h-~~~VtsVafSPdG~~LAsgSdd~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs 255 (767)
.. . ...|....|+.+ .-+|.-.+.++-+|-+...+. ..+....|.-.|+-..|.++.+.++.+.+
T Consensus 104 ~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G~e~y~v~pekr--slRlVks~~~nvnWy~yc~et~v~LL~t~ 173 (657)
T KOG2377|consen 104 YTQECKTKNANILGFCWTSS-TEIAFITDQGIEFYQVLPEKR--SLRLVKSHNLNVNWYMYCPETAVILLSTT 173 (657)
T ss_pred HHHHhccCcceeEEEEEecC-eeEEEEecCCeEEEEEchhhh--hhhhhhhcccCccEEEEccccceEeeecc
Confidence 22 2 234788889866 677777888888887765443 23456678888999999999887666554
No 419
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=81.52 E-value=26 Score=36.67 Aligned_cols=102 Identities=14% Similarity=0.130 Sum_probs=66.6
Q ss_pred CeEEEEeCCCeEEEEECCC--CeEEEEEccCCCCcEEEEEccCCCcEEEEEeCC------CeEEEE---ECC--CCeEE-
Q 004217 120 KTLASTHGDHTVKIIDCQT--GSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLD------HEVRLW---NAS--TAECI- 185 (767)
Q Consensus 120 ~~LASgs~DGtVrVWDl~t--g~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~D------GtVrIW---Dl~--tg~~i- 185 (767)
+.|+.+...+.|.+|++.+ .+.+..|..- +.|..+.++. .++++++--.+ ..+|+| +.. ..+.+
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~-~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~ 106 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSE-AGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVR 106 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEecc-ccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEE
Confidence 4444445567899999983 3455666543 7899999999 89999996432 256665 222 11111
Q ss_pred -Ee---------------------ecCCCCeEEEEEcCCCCEEEEEECCcEEEEEcCCCc
Q 004217 186 -GS---------------------RDFYRPIASIAFHASGELLAVASGHKLYIWRYNMRE 223 (767)
Q Consensus 186 -~~---------------------l~h~~~VtsVafSPdG~~LAsgSdd~V~VWDl~t~~ 223 (767)
+. +.....+.+++-.|..--|++|+++++.+|.+....
T Consensus 107 vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~~ 166 (215)
T PF14761_consen 107 VRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQT 166 (215)
T ss_pred EEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEEE
Confidence 11 123346678888887667778889999999876543
No 420
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=80.63 E-value=1.6e+02 Score=37.26 Aligned_cols=173 Identities=14% Similarity=0.172 Sum_probs=95.1
Q ss_pred CCCEEEEEeCCCeEEEEeCCC-CCCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEE-ccCCCCcEEEEE
Q 004217 80 ARRGLASWVEAESLHHLRPKY-CPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL-HGHRRTPWVVRF 157 (767)
Q Consensus 80 ~g~~LaSgs~DgsIrlWd~~t-~~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L-~gH~~~V~sLaf 157 (767)
.+..|+-.. .+.||+++-.. ...-..++.++....+.+...++.++.++.+...++..+...... +.-...|.|+.+
T Consensus 460 ~g~~lvQvT-s~~iRl~ss~~~~~~W~~p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDi 538 (1096)
T KOG1897|consen 460 NGNQLVQVT-SNSIRLVSSAGLRSEWRPPGKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDI 538 (1096)
T ss_pred CCceEEEEe-cccEEEEcchhhhhcccCCCceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEec
Confidence 333344332 33466666541 111223455666666666778888888888887787766522211 223457899999
Q ss_pred ccC--CCc---EEEEEeCCCeEEEEEC-CCCeEEEee--c---CCCCeEEEEEcCCCCEEEEEECCc-E--EEEEcCCCc
Q 004217 158 HPL--NPT---IIASGSLDHEVRLWNA-STAECIGSR--D---FYRPIASIAFHASGELLAVASGHK-L--YIWRYNMRE 223 (767)
Q Consensus 158 sP~--dg~---lLaSgS~DGtVrIWDl-~tg~~i~~l--~---h~~~VtsVafSPdG~~LAsgSdd~-V--~VWDl~t~~ 223 (767)
+|. +.+ +++.|..+..+.+--. .+...+... . ....|--..|--|..+|.++..++ + +++|..++.
T Consensus 539 sp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~ 618 (1096)
T KOG1897|consen 539 SPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQ 618 (1096)
T ss_pred ccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccce
Confidence 974 333 8888888776655433 333332222 1 233455556666677888888766 4 455666655
Q ss_pred cccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 004217 224 ETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA 254 (767)
Q Consensus 224 ~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSg 254 (767)
..... ...-...++.=-.|+..++.-+.++
T Consensus 619 lsd~K-k~~lGt~P~~Lr~f~sk~~t~vfa~ 648 (1096)
T KOG1897|consen 619 LSDRK-KVTLGTQPISLRTFSSKSRTAVFAL 648 (1096)
T ss_pred Ecccc-ccccCCCCcEEEEEeeCCceEEEEe
Confidence 43311 1122244555555666555444443
No 421
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=80.59 E-value=12 Score=39.27 Aligned_cols=25 Identities=16% Similarity=0.332 Sum_probs=18.0
Q ss_pred CCCCeEEEEEccCCCeEEEEEeeCC
Q 004217 234 TRRSLRAVHFHPHAAPLLLTAEVND 258 (767)
Q Consensus 234 h~~~VtsVaFSPDG~~LlaSgsvwd 258 (767)
+.+-.+.+++.|++..++.+++.|-
T Consensus 227 ~~nvlNGIA~~~~~~r~~iTGK~wp 251 (262)
T COG3823 227 NDNVLNGIAHDPQQDRFLITGKLWP 251 (262)
T ss_pred ccccccceeecCcCCeEEEecCcCc
Confidence 3445677888888877888887663
No 422
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.96 E-value=23 Score=38.86 Aligned_cols=110 Identities=11% Similarity=0.232 Sum_probs=74.9
Q ss_pred EccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec--CCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCC
Q 004217 145 LHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD--FYRPIASIAFHASGELLAVASGHK-LYIWRYNM 221 (767)
Q Consensus 145 L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~--h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t 221 (767)
+.|-...+.++.|+| +.+.|++......-.+|=...|+.++.+. .-.....|.|.-+|+++++--.+. +.++.+..
T Consensus 81 i~g~~~nvS~LTynp-~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~ 159 (316)
T COG3204 81 ILGETANVSSLTYNP-DTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDA 159 (316)
T ss_pred cccccccccceeeCC-CcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcC
Confidence 345566699999999 77777777777777788777899988864 334456678887777776655444 87777765
Q ss_pred CccccCCe---EE---ecC-CCCeEEEEEccCCCeEEEEEe
Q 004217 222 REETSSPR---IV---LRT-RRSLRAVHFHPHAAPLLLTAE 255 (767)
Q Consensus 222 ~~~~~~~~---~l---~~h-~~~VtsVaFSPDG~~LlaSgs 255 (767)
........ .. ..+ ....-.++|+|....++++-+
T Consensus 160 ~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKE 200 (316)
T COG3204 160 DTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKE 200 (316)
T ss_pred CccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEc
Confidence 53221111 11 112 556789999999998877655
No 423
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=77.09 E-value=1.2e+02 Score=35.54 Aligned_cols=134 Identities=15% Similarity=0.143 Sum_probs=66.4
Q ss_pred eEEEE---eCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCCCC----
Q 004217 121 TLAST---HGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRP---- 193 (767)
Q Consensus 121 ~LASg---s~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~~---- 193 (767)
+++.. .......+.|. .|.....+.........+..-+ ++++++... ..+..+|+. |+.+........
T Consensus 117 ~~~~~~~~~~~~~~~~iD~-~G~Vrw~~~~~~~~~~~~~~l~-nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~ 191 (477)
T PF05935_consen 117 YFVNGNDWDSSSYTYLIDN-NGDVRWYLPLDSGSDNSFKQLP-NGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDF 191 (477)
T ss_dssp EEEEETT--BEEEEEEEET-TS-EEEEE-GGGT--SSEEE-T-TS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B
T ss_pred EEEeCCCCCCCceEEEECC-CccEEEEEccCccccceeeEcC-CCCEEEecC--CceEEEcCC-CCEEEeeecCCccccc
Confidence 44544 24567788884 4666665543222222255667 777776554 788999985 566665543332
Q ss_pred eEEEEEcCCCCEEEEEE--------------CCcEEEEEcCCCccccC--------CeEE--------------ecCC--
Q 004217 194 IASIAFHASGELLAVAS--------------GHKLYIWRYNMREETSS--------PRIV--------------LRTR-- 235 (767)
Q Consensus 194 VtsVafSPdG~~LAsgS--------------dd~V~VWDl~t~~~~~~--------~~~l--------------~~h~-- 235 (767)
-..+.+.|+|++|+.+. .|.|..+| .+++.+.. +... ....
T Consensus 192 HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW 270 (477)
T PF05935_consen 192 HHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDW 270 (477)
T ss_dssp -S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS
T ss_pred ccccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCc
Confidence 24677889999887776 23344444 44433220 0000 0011
Q ss_pred CCeEEEEEccCCCeEEEEEe----eCCcC
Q 004217 236 RSLRAVHFHPHAAPLLLTAE----VNDLD 260 (767)
Q Consensus 236 ~~VtsVaFSPDG~~LlaSgs----vwdl~ 260 (767)
-.++++.+.+....|++++. +|.++
T Consensus 271 ~H~Nsi~yd~~dd~iivSsR~~s~V~~Id 299 (477)
T PF05935_consen 271 LHINSIDYDPSDDSIIVSSRHQSAVIKID 299 (477)
T ss_dssp --EEEEEEETTTTEEEEEETTT-EEEEEE
T ss_pred cccCccEEeCCCCeEEEEcCcceEEEEEE
Confidence 24899999996666777765 66666
No 424
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=77.01 E-value=31 Score=33.66 Aligned_cols=85 Identities=12% Similarity=0.123 Sum_probs=59.8
Q ss_pred EEEccCCCcEEEEEeCCCeEEEEECCC--------CeEEEeecCCCCeEEEEEcC-----CCCEEEEEECCcEEEEEcCC
Q 004217 155 VRFHPLNPTIIASGSLDHEVRLWNAST--------AECIGSRDFYRPIASIAFHA-----SGELLAVASGHKLYIWRYNM 221 (767)
Q Consensus 155 LafsP~dg~lLaSgS~DGtVrIWDl~t--------g~~i~~l~h~~~VtsVafSP-----dG~~LAsgSdd~V~VWDl~t 221 (767)
-+|.. ....|+.+..-++|.|++... ...+..+.....|++++-.+ +...|+.|+...|..||+..
T Consensus 4 GkfDG-~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~ 82 (136)
T PF14781_consen 4 GKFDG-VHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVEN 82 (136)
T ss_pred EEeCC-CceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccceEEEEEccc
Confidence 35555 445677788889999998763 33456677788888886443 23589999999999999987
Q ss_pred CccccCCeEEecCCCCeEEEEEc
Q 004217 222 REETSSPRIVLRTRRSLRAVHFH 244 (767)
Q Consensus 222 ~~~~~~~~~l~~h~~~VtsVaFS 244 (767)
...+- ...-.+.|+++.+-
T Consensus 83 N~d~F----yke~~DGvn~i~~g 101 (136)
T PF14781_consen 83 NSDLF----YKEVPDGVNAIVIG 101 (136)
T ss_pred Cchhh----hhhCccceeEEEEE
Confidence 76432 33445777777764
No 425
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=76.84 E-value=6.6 Score=30.77 Aligned_cols=32 Identities=13% Similarity=0.207 Sum_probs=27.1
Q ss_pred CCcEEEEEccCCC--cEEEEEeCCCeEEEEECCC
Q 004217 150 RTPWVVRFHPLNP--TIIASGSLDHEVRLWNAST 181 (767)
Q Consensus 150 ~~V~sLafsP~dg--~lLaSgS~DGtVrIWDl~t 181 (767)
+.|.++.|+|... ++|+-.-.-+.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4688999998555 6888888889999999995
No 426
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=76.56 E-value=1.4e+02 Score=37.09 Aligned_cols=145 Identities=12% Similarity=0.088 Sum_probs=83.7
Q ss_pred CCEEEEEeCCCeEEEEeCCCCCCC---CCCCCe-------------EEEEECC--CCCeEEEEeC----------CCeEE
Q 004217 81 RRGLASWVEAESLHHLRPKYCPLS---PPPRST-------------IAAAFSP--DGKTLASTHG----------DHTVK 132 (767)
Q Consensus 81 g~~LaSgs~DgsIrlWd~~t~~L~---gH~~sV-------------tsVaFSp--DG~~LASgs~----------DGtVr 132 (767)
+.+|+.++.|+.+.-.|.+++++. +..+.| ..+.-+| .+..++.|+. +|.|+
T Consensus 260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~ 339 (764)
T TIGR03074 260 ARRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIR 339 (764)
T ss_pred CCEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEE
Confidence 447777888888888888877432 111111 1122223 2345666643 68899
Q ss_pred EEECCCCeEEEEEccC-----------------CCCc-EEEEEccCCCcEEEEEe------------------CCCeEEE
Q 004217 133 IIDCQTGSCLKVLHGH-----------------RRTP-WVVRFHPLNPTIIASGS------------------LDHEVRL 176 (767)
Q Consensus 133 VWDl~tg~~l~~L~gH-----------------~~~V-~sLafsP~dg~lLaSgS------------------~DGtVrI 176 (767)
-+|+++|+.+..+..- ...+ ..+++.+ ...+++.+. ..++|.-
T Consensus 340 A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~-~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvA 418 (764)
T TIGR03074 340 AFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDE-KLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVA 418 (764)
T ss_pred EEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcC-CCCeEEEeCCCccccccCCccccCcccccceEEE
Confidence 9999999988776410 0111 1234555 223332211 2356777
Q ss_pred EECCCCeEEEeecC-CC---------CeEEEEEcC-CCC---EEEEEECCc-EEEEEcCCCcccc
Q 004217 177 WNASTAECIGSRDF-YR---------PIASIAFHA-SGE---LLAVASGHK-LYIWRYNMREETS 226 (767)
Q Consensus 177 WDl~tg~~i~~l~h-~~---------~VtsVafSP-dG~---~LAsgSdd~-V~VWDl~t~~~~~ 226 (767)
.|.++|+....++. .. ...-+.+.- +|+ .++.+..++ ++++|-++++.+.
T Consensus 419 LD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~ 483 (764)
T TIGR03074 419 LDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIV 483 (764)
T ss_pred EeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEe
Confidence 88889988877542 11 111222322 563 666776555 9999999998766
No 427
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=76.25 E-value=57 Score=40.96 Aligned_cols=154 Identities=16% Similarity=0.217 Sum_probs=97.2
Q ss_pred EEEEeCCCCC-CCCCC-------CCeEEEEECCC-CCeEEEEeC----------CCeEEEEECCCCeEEEEEcc--CCCC
Q 004217 93 LHHLRPKYCP-LSPPP-------RSTIAAAFSPD-GKTLASTHG----------DHTVKIIDCQTGSCLKVLHG--HRRT 151 (767)
Q Consensus 93 IrlWd~~t~~-L~gH~-------~sVtsVaFSpD-G~~LASgs~----------DGtVrVWDl~tg~~l~~L~g--H~~~ 151 (767)
++++|.++-+ +..|. -+|.++.|..| +.+++.|.. .|.|.|+.+..++.++.... -++.
T Consensus 752 l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Ga 831 (1096)
T KOG1897|consen 752 LRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGA 831 (1096)
T ss_pred EEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccc
Confidence 6677776642 22222 24566668887 777777753 47788888776444444332 2455
Q ss_pred cEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEe-ecCCCCeEEEEEcCCCCEEEEEEC-CcEEEEEc--CCCccccC
Q 004217 152 PWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-RDFYRPIASIAFHASGELLAVASG-HKLYIWRY--NMREETSS 227 (767)
Q Consensus 152 V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~-l~h~~~VtsVafSPdG~~LAsgSd-d~V~VWDl--~t~~~~~~ 227 (767)
|.++.-- +++++|. -...|++|++.+.+.++. -.+..++..+...-.|..+++|.- ..+.+... ..+....
T Consensus 832 v~aL~~f--ngkllA~--In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~e- 906 (1096)
T KOG1897|consen 832 VYALVEF--NGKLLAG--INQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEE- 906 (1096)
T ss_pred eeehhhh--CCeEEEe--cCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEE-
Confidence 6665432 5677764 467899999998865554 457788888888889999999974 44444443 3332322
Q ss_pred CeEEecCCCCeEEEEEccCCCeEEE
Q 004217 228 PRIVLRTRRSLRAVHFHPHAAPLLL 252 (767)
Q Consensus 228 ~~~l~~h~~~VtsVaFSPDG~~Lla 252 (767)
....-+..+.+++.+-.+..++.+
T Consensus 907 -vArD~~p~Wmtaveil~~d~ylga 930 (1096)
T KOG1897|consen 907 -VARDYNPNWMTAVEILDDDTYLGA 930 (1096)
T ss_pred -eehhhCccceeeEEEecCceEEee
Confidence 122346778888888777665544
No 428
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=76.19 E-value=58 Score=35.60 Aligned_cols=130 Identities=13% Similarity=0.132 Sum_probs=90.6
Q ss_pred CCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEe
Q 004217 108 RSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS 187 (767)
Q Consensus 108 ~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~ 187 (767)
..-..++-++||..-+++...+.|--.|-.+|+....--+.......|..-| ++...++-+.. -|.-.|-++.+....
T Consensus 62 ~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gp-dg~~Witd~~~-aI~R~dpkt~evt~f 139 (353)
T COG4257 62 SAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGP-DGSAWITDTGL-AIGRLDPKTLEVTRF 139 (353)
T ss_pred CCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECC-CCCeeEecCcc-eeEEecCcccceEEe
Confidence 3567889999999999998888998899999986665556666777888899 55555543322 455566666554332
Q ss_pred ---ec-CCCCeEEEEEcCCCCEEEEEECC----------cEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEE
Q 004217 188 ---RD-FYRPIASIAFHASGELLAVASGH----------KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLL 252 (767)
Q Consensus 188 ---l~-h~~~VtsVafSPdG~~LAsgSdd----------~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~Lla 252 (767)
.+ .........|++.|++-+++..+ .|++|+...+. .-+.|+..|||...++
T Consensus 140 ~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG~-------------gpyGi~atpdGsvwya 205 (353)
T COG4257 140 PLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQGG-------------GPYGICATPDGSVWYA 205 (353)
T ss_pred ecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCCCC-------------CCcceEECCCCcEEEE
Confidence 12 23456778899999998888632 16677655332 3467888999985555
No 429
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=76.04 E-value=9.4 Score=29.93 Aligned_cols=31 Identities=29% Similarity=0.473 Sum_probs=25.9
Q ss_pred CCeEEEEECCC-C--CeEEEEeCCCeEEEEECCC
Q 004217 108 RSTIAAAFSPD-G--KTLASTHGDHTVKIIDCQT 138 (767)
Q Consensus 108 ~sVtsVaFSpD-G--~~LASgs~DGtVrVWDl~t 138 (767)
+.|.+++|||+ + .+|+.+-.-+.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 46899999984 4 5888887789999999985
No 430
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=75.55 E-value=33 Score=42.20 Aligned_cols=74 Identities=18% Similarity=0.255 Sum_probs=51.8
Q ss_pred CCeEEEEECCCCCeEEEEeCCCeEEEEECC----------CCeE--E-EEE--------ccCCCCcEEEEEccCC--CcE
Q 004217 108 RSTIAAAFSPDGKTLASTHGDHTVKIIDCQ----------TGSC--L-KVL--------HGHRRTPWVVRFHPLN--PTI 164 (767)
Q Consensus 108 ~sVtsVaFSpDG~~LASgs~DGtVrVWDl~----------tg~~--l-~~L--------~gH~~~V~sLafsP~d--g~l 164 (767)
-.|..|.+|++|++|+..|..+. .|-.+. .|+. . +++ ..+...|..+.|||.. +..
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 36889999999999998888654 333332 1211 1 111 1344578899999942 578
Q ss_pred EEEEeCCCeEEEEECCCC
Q 004217 165 IASGSLDHEVRLWNASTA 182 (767)
Q Consensus 165 LaSgS~DGtVrIWDl~tg 182 (767)
|+.-..|+++|+||+...
T Consensus 164 l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDP 181 (717)
T ss_pred EEEEecCCEEEEEecCCC
Confidence 888889999999999753
No 431
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=75.05 E-value=1.5e+02 Score=35.68 Aligned_cols=104 Identities=19% Similarity=0.140 Sum_probs=62.4
Q ss_pred CCCCCeEEEEeCC------CeEEEEECCCCeEEE--EEccCCCCcEEEEEccCCCcEEEEEeCC------CeEEEEECCC
Q 004217 116 SPDGKTLASTHGD------HTVKIIDCQTGSCLK--VLHGHRRTPWVVRFHPLNPTIIASGSLD------HEVRLWNAST 181 (767)
Q Consensus 116 SpDG~~LASgs~D------GtVrVWDl~tg~~l~--~L~gH~~~V~sLafsP~dg~lLaSgS~D------GtVrIWDl~t 181 (767)
+..+.+++.|+.+ ..|..+|..++.... .+. ....-.+++.. ++.++++|+.| .++..||.++
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~ 358 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRT 358 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCC-cccccccEEEE--CCEEEEEccccCCCcccceEEEecCCC
Confidence 3346677777776 368889988774332 222 22233445554 46899999998 4688899988
Q ss_pred CeEEEeec--CCCCeEEEEEcCCCCEEEEEECCc------EEEEEcCCCc
Q 004217 182 AECIGSRD--FYRPIASIAFHASGELLAVASGHK------LYIWRYNMRE 223 (767)
Q Consensus 182 g~~i~~l~--h~~~VtsVafSPdG~~LAsgSdd~------V~VWDl~t~~ 223 (767)
++....-. ....-..++ .-+|.+.|+|+.++ +..||..+.+
T Consensus 359 ~~W~~~a~M~~~R~~~~v~-~l~g~iYavGG~dg~~~l~svE~YDp~~~~ 407 (571)
T KOG4441|consen 359 NQWTPVAPMNTKRSDFGVA-VLDGKLYAVGGFDGEKSLNSVECYDPVTNK 407 (571)
T ss_pred CceeccCCccCccccceeE-EECCEEEEEeccccccccccEEEecCCCCc
Confidence 77544321 111111122 12577777777432 8889887764
No 432
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=74.84 E-value=31 Score=38.11 Aligned_cols=100 Identities=21% Similarity=0.268 Sum_probs=56.3
Q ss_pred CeEEEEECCCCCeEEEEeCCCeEEEEECCCCeE---EEEE----ccCCCCcEEEEEccC---CCcEEEEEeCC-------
Q 004217 109 STIAAAFSPDGKTLASTHGDHTVKIIDCQTGSC---LKVL----HGHRRTPWVVRFHPL---NPTIIASGSLD------- 171 (767)
Q Consensus 109 sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~---l~~L----~gH~~~V~sLafsP~---dg~lLaSgS~D------- 171 (767)
.-++|+|.|||++|++ -..|.|++++ ..+.. +..+ .........++++|. ++.++++-+..
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 3578999999987765 5599999999 44543 2223 123456789999992 24445544422
Q ss_pred -CeEEEEECCCC--e-----EEE-eec----CCCCeEEEEEcCCCCEEEEEE
Q 004217 172 -HEVRLWNASTA--E-----CIG-SRD----FYRPIASIAFHASGELLAVAS 210 (767)
Q Consensus 172 -GtVrIWDl~tg--~-----~i~-~l~----h~~~VtsVafSPdG~~LAsgS 210 (767)
..|.-|....+ . .+. .+. ....-..|+|.|||.+.++.+
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G 132 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVG 132 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeC
Confidence 23444544433 1 111 111 233456799999997555544
No 433
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=74.33 E-value=94 Score=38.22 Aligned_cols=84 Identities=15% Similarity=0.273 Sum_probs=53.5
Q ss_pred cceeEEEeccC--ccceEEeecccccccceeeEEcCceeeeeEEEEEEEEecCcEEEEeecCCCCceeeeEecccCCCce
Q 004217 649 HCLTSIQFSPT--SENLLLAYGRRHSSLLKSVLIDGEITVPTYTILEVYRVSDMELVRVLPSAEDEVNVACFHPSVGGGL 726 (767)
Q Consensus 649 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 726 (767)
+.+.--+|.++ .+.+|+--=.++..|+| -.....+.+|- +|+-++++..-+ ...-|-+|+.|..|.-+ =+
T Consensus 542 ~s~~g~~~~~~~~~~~~l~vTT~~~~~L~~----~~~L~~~~~t~-~iF~l~~~~~~~--~~~~~ri~~~~~ipel~-~v 613 (717)
T PF08728_consen 542 DSPNGYKLKSYSSSDDFLLVTTSKKLYLLR----ADPLICNSSTK-RIFPLSIPFNCE--SKSSNRINMVHHIPELS-CV 613 (717)
T ss_pred cCCCcceecccCCCccEEEEEeccEEEEEc----CCCeeeeecch-hccCcccccccc--ccccceEEEEEecCccc-EE
Confidence 45555667765 44445544555665654 23445555555 777777766555 33448999999999875 36
Q ss_pred eeeeccceEEEEEe
Q 004217 727 VYGTKEGKLRILQF 740 (767)
Q Consensus 727 ~~~~~~~~~~~~~~ 740 (767)
|=++-.|++-|+|.
T Consensus 614 v~asq~G~v~i~rL 627 (717)
T PF08728_consen 614 VVASQQGLVSILRL 627 (717)
T ss_pred EEEcccCeEEEEEE
Confidence 77889999655543
No 434
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=74.33 E-value=85 Score=36.61 Aligned_cols=110 Identities=13% Similarity=0.165 Sum_probs=63.4
Q ss_pred EccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEe--ec------CCCCeEEEEEcCCC------CEEEEEE
Q 004217 145 LHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS--RD------FYRPIASIAFHASG------ELLAVAS 210 (767)
Q Consensus 145 L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~--l~------h~~~VtsVafSPdG------~~LAsgS 210 (767)
+...-...+.|+|.| ++++|++--..|.|++++-.++..... +. .......|+|+|+- .+|.+..
T Consensus 25 va~GL~~Pw~maflP-DG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsy 103 (454)
T TIGR03606 25 LLSGLNKPWALLWGP-DNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISY 103 (454)
T ss_pred EECCCCCceEEEEcC-CCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEE
Confidence 333445678999999 888777765579999998665432211 11 24567899999884 2444442
Q ss_pred -----------CCcEEEEEcCCC--ccccCCeEEecC----CCCeEEEEEccCCCeEEEEEe
Q 004217 211 -----------GHKLYIWRYNMR--EETSSPRIVLRT----RRSLRAVHFHPHAAPLLLTAE 255 (767)
Q Consensus 211 -----------dd~V~VWDl~t~--~~~~~~~~l~~h----~~~VtsVaFSPDG~~LlaSgs 255 (767)
...|.-|.+... ........+... ...-..|.|.|||..++++++
T Consensus 104 t~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD 165 (454)
T TIGR03606 104 TYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGE 165 (454)
T ss_pred eccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECC
Confidence 122555655421 111111111111 112347889999997676665
No 435
>PHA02713 hypothetical protein; Provisional
Probab=74.31 E-value=93 Score=37.11 Aligned_cols=126 Identities=10% Similarity=0.001 Sum_probs=65.3
Q ss_pred CeEEEEeCCCCC---CCC--CCCCeEEEEECCCCCeEEEEeCCC-----eEEEEECCCCeEEE--EEccCCCCcEEEEEc
Q 004217 91 ESLHHLRPKYCP---LSP--PPRSTIAAAFSPDGKTLASTHGDH-----TVKIIDCQTGSCLK--VLHGHRRTPWVVRFH 158 (767)
Q Consensus 91 gsIrlWd~~t~~---L~g--H~~sVtsVaFSpDG~~LASgs~DG-----tVrVWDl~tg~~l~--~L~gH~~~V~sLafs 158 (767)
..+..||..+.+ +.. ....-.+++ .-+|++.+.|+.++ +|..||..+.+-.. .+.........+.+
T Consensus 320 ~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~-~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~- 397 (557)
T PHA02713 320 NKVYKINIENKIHVELPPMIKNRCRFSLA-VIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL- 397 (557)
T ss_pred ceEEEEECCCCeEeeCCCCcchhhceeEE-EECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE-
Confidence 347778877652 111 111111222 22678888888754 48889988765221 11111111222333
Q ss_pred cCCCcEEEEEeCCC-----------------------eEEEEECCCCeEEEe--ecCCCCeEEEEEcCCCCEEEEEECC-
Q 004217 159 PLNPTIIASGSLDH-----------------------EVRLWNASTAECIGS--RDFYRPIASIAFHASGELLAVASGH- 212 (767)
Q Consensus 159 P~dg~lLaSgS~DG-----------------------tVrIWDl~tg~~i~~--l~h~~~VtsVafSPdG~~LAsgSdd- 212 (767)
++.+.+.|+.++ ++..||..+.+.... +.....-.+++ .-+|++.+.|+.+
T Consensus 398 --~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~-~~~~~IYv~GG~~~ 474 (557)
T PHA02713 398 --DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVV-SHKDDIYVVCDIKD 474 (557)
T ss_pred --CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCcEE-EECCEEEEEeCCCC
Confidence 678888887653 477788887665433 21111111222 2246666666521
Q ss_pred ------cEEEEEcCC
Q 004217 213 ------KLYIWRYNM 221 (767)
Q Consensus 213 ------~V~VWDl~t 221 (767)
.+..||..+
T Consensus 475 ~~~~~~~ve~Ydp~~ 489 (557)
T PHA02713 475 EKNVKTCIFRYNTNT 489 (557)
T ss_pred CCccceeEEEecCCC
Confidence 267888876
No 436
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=74.20 E-value=1.3e+02 Score=32.58 Aligned_cols=129 Identities=16% Similarity=0.157 Sum_probs=81.1
Q ss_pred EEcCCCEEEEEeCCCeEEEEeCCCCCCC---CCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccC-----
Q 004217 77 GRDARRGLASWVEAESLHHLRPKYCPLS---PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGH----- 148 (767)
Q Consensus 77 ~sd~g~~LaSgs~DgsIrlWd~~t~~L~---gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH----- 148 (767)
..++..+..+| .++...+||.++-+.. ...+.=+.++ .|++.|+.......++++|.++.+..+.+.-.
T Consensus 97 ~~~d~l~qLTW-k~~~~f~yd~~tl~~~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~p 173 (264)
T PF05096_consen 97 ILGDKLYQLTW-KEGTGFVYDPNTLKKIGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRP 173 (264)
T ss_dssp EETTEEEEEES-SSSEEEEEETTTTEEEEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE
T ss_pred EECCEEEEEEe-cCCeEEEEccccceEEEEEecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEE
Confidence 33455555666 5778889998764211 1123344555 46777877777789999999887776666432
Q ss_pred CCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec-----------C-----CCCeEEEEEcCCCCEEEEEE
Q 004217 149 RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-----------F-----YRPIASIAFHASGELLAVAS 210 (767)
Q Consensus 149 ~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~-----------h-----~~~VtsVafSPdG~~LAsgS 210 (767)
-..++-+.|. ++.+.|=.-....|...|..+|+.+..+. . ..-.+.|||+|....|.+.+
T Consensus 174 v~~LNELE~i--~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 174 VSNLNELEYI--NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp ---EEEEEEE--TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred CCCcEeEEEE--cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 1246667886 47777777777888889999999887642 0 23478999999887666555
No 437
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=74.11 E-value=1.8e+02 Score=33.96 Aligned_cols=135 Identities=16% Similarity=0.066 Sum_probs=68.6
Q ss_pred CCEEEEEeCCCeEEEEeCCCCCCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCC---CcEEEEE
Q 004217 81 RRGLASWVEAESLHHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRR---TPWVVRF 157 (767)
Q Consensus 81 g~~LaSgs~DgsIrlWd~~t~~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~---~V~sLaf 157 (767)
....+.-..+|.|| |.........+. +.+-++|.+++... ..++.+|+. |+.+..+.--.. .-..+.+
T Consensus 127 ~~~~~~iD~~G~Vr-w~~~~~~~~~~~-----~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~ 197 (477)
T PF05935_consen 127 SSYTYLIDNNGDVR-WYLPLDSGSDNS-----FKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDE 197 (477)
T ss_dssp EEEEEEEETTS-EE-EEE-GGGT--SS-----EEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE
T ss_pred CceEEEECCCccEE-EEEccCccccce-----eeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEE
Confidence 34444445566664 544333222222 67778998887655 788889975 665555432221 1245677
Q ss_pred ccCCCcEEEEEeC-------------CCeEEEEECCCCeEEEeec---C----C---------------------CCeEE
Q 004217 158 HPLNPTIIASGSL-------------DHEVRLWNASTAECIGSRD---F----Y---------------------RPIAS 196 (767)
Q Consensus 158 sP~dg~lLaSgS~-------------DGtVrIWDl~tg~~i~~l~---h----~---------------------~~Vts 196 (767)
-| ++++|+.+.. .-.|..+| .+|+.+..+. | . -.+++
T Consensus 198 l~-nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Ns 275 (477)
T PF05935_consen 198 LP-NGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINS 275 (477)
T ss_dssp -T-TS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEE
T ss_pred CC-CCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCc
Confidence 78 8888887772 12366667 7777766521 1 0 13789
Q ss_pred EEEcCCCCEEEEEECC--cEEEEEcCCCcccc
Q 004217 197 IAFHASGELLAVASGH--KLYIWRYNMREETS 226 (767)
Q Consensus 197 VafSPdG~~LAsgSdd--~V~VWDl~t~~~~~ 226 (767)
+.+.+....|++++.. .|...|.++++...
T Consensus 276 i~yd~~dd~iivSsR~~s~V~~Id~~t~~i~W 307 (477)
T PF05935_consen 276 IDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKW 307 (477)
T ss_dssp EEEETTTTEEEEEETTT-EEEEEE-TTS-EEE
T ss_pred cEEeCCCCeEEEEcCcceEEEEEECCCCcEEE
Confidence 9999955555555543 48888877776544
No 438
>PRK13684 Ycf48-like protein; Provisional
Probab=73.73 E-value=1e+02 Score=34.09 Aligned_cols=109 Identities=10% Similarity=0.026 Sum_probs=67.5
Q ss_pred CCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccC----CCCcEEEEEccCCCcEEEEEeCCCeEEEEECCC
Q 004217 106 PPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGH----RRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST 181 (767)
Q Consensus 106 H~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH----~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~t 181 (767)
-...++++.+.++++.++.+ ..|.+++=..+.|........+ ...+..+.|.+ ++.+++. +.+|.|. .....
T Consensus 213 ~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~-~~~~~~~-G~~G~v~-~S~d~ 288 (334)
T PRK13684 213 SSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRT-PGEIWAG-GGNGTLL-VSKDG 288 (334)
T ss_pred CcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccccccCCccccccceeeEEEcC-CCCEEEE-cCCCeEE-EeCCC
Confidence 34678999999999877765 4577654334455433322211 23467888988 6665554 4567554 34444
Q ss_pred CeEEEeec----CCCCeEEEEEcCCCCEEEEEECCcEEEEE
Q 004217 182 AECIGSRD----FYRPIASIAFHASGELLAVASGHKLYIWR 218 (767)
Q Consensus 182 g~~i~~l~----h~~~VtsVafSPdG~~LAsgSdd~V~VWD 218 (767)
++...... .....+.+.|..+++.+++|..+.|..|+
T Consensus 289 G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~il~~~ 329 (334)
T PRK13684 289 GKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRGVLLRYV 329 (334)
T ss_pred CCCCeECCcCCCCCcceEEEEEeCCCceEEECCCceEEEec
Confidence 44333321 22457788888888888888777776664
No 439
>PHA02713 hypothetical protein; Provisional
Probab=73.11 E-value=57 Score=38.86 Aligned_cols=126 Identities=10% Similarity=-0.037 Sum_probs=67.5
Q ss_pred eEEEEeCCCCC------CCCCCCCeEEEEECCCCCeEEEEeCCC-----------------------eEEEEECCCCeEE
Q 004217 92 SLHHLRPKYCP------LSPPPRSTIAAAFSPDGKTLASTHGDH-----------------------TVKIIDCQTGSCL 142 (767)
Q Consensus 92 sIrlWd~~t~~------L~gH~~sVtsVaFSpDG~~LASgs~DG-----------------------tVrVWDl~tg~~l 142 (767)
++..||..+.+ +.........+.+ +|+..+.|+.++ .|..||..+.+-.
T Consensus 368 sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~ 445 (557)
T PHA02713 368 TIECYTMGDDKWKMLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWE 445 (557)
T ss_pred eEEEEECCCCeEEECCCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEe
Confidence 48889987652 1111111222222 678888887652 4777888776532
Q ss_pred --EEEccCCCCcEEEEEccCCCcEEEEEeCC------CeEEEEECCC-CeEEEe--ecCCCCeEEEEEcCCCCEEEEEEC
Q 004217 143 --KVLHGHRRTPWVVRFHPLNPTIIASGSLD------HEVRLWNAST-AECIGS--RDFYRPIASIAFHASGELLAVASG 211 (767)
Q Consensus 143 --~~L~gH~~~V~sLafsP~dg~lLaSgS~D------GtVrIWDl~t-g~~i~~--l~h~~~VtsVafSPdG~~LAsgSd 211 (767)
..+.........+.+ ++++.+.|+.+ ..|..||..+ .+.... +........++.. +|++.++|+.
T Consensus 446 ~v~~m~~~r~~~~~~~~---~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~-~~~iyv~Gg~ 521 (557)
T PHA02713 446 TLPNFWTGTIRPGVVSH---KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH-DNTIMMLHCY 521 (557)
T ss_pred ecCCCCcccccCcEEEE---CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE-CCEEEEEeee
Confidence 112111111222223 56777877754 2467899887 454332 3222222222222 6777778874
Q ss_pred Cc---EEEEEcCCCc
Q 004217 212 HK---LYIWRYNMRE 223 (767)
Q Consensus 212 d~---V~VWDl~t~~ 223 (767)
++ +..||..+.+
T Consensus 522 ~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 522 ESYMLQDTFNVYTYE 536 (557)
T ss_pred cceeehhhcCccccc
Confidence 44 7778777654
No 440
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.97 E-value=39 Score=39.08 Aligned_cols=115 Identities=10% Similarity=0.091 Sum_probs=71.6
Q ss_pred CCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEE----EEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCC
Q 004217 106 PPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCL----KVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST 181 (767)
Q Consensus 106 H~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l----~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~t 181 (767)
..++|.++.||+|.+.||.--.|++|.+++....+.. .+.+..+..|....|.. + .-++-... ..+-+|.+..
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~-s-~e~A~i~~-~G~e~y~v~p 141 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTS-S-TEIAFITD-QGIEFYQVLP 141 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEec-C-eeEEEEec-CCeEEEEEch
Confidence 4568999999999999999999999999998543322 22233345688899986 4 44444433 3366666543
Q ss_pred Ce-EEEee-cCCCCeEEEEEcCCCCEEEEEEC---CcEEEEEcCCCc
Q 004217 182 AE-CIGSR-DFYRPIASIAFHASGELLAVASG---HKLYIWRYNMRE 223 (767)
Q Consensus 182 g~-~i~~l-~h~~~VtsVafSPdG~~LAsgSd---d~V~VWDl~t~~ 223 (767)
.+ .++.. .+.-.|.--.|.++.+.+..++. +.+.=+.++++.
T Consensus 142 ekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~~ 188 (657)
T KOG2377|consen 142 EKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAGT 188 (657)
T ss_pred hhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeece
Confidence 22 22222 35566777788888875444432 224444444443
No 441
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=72.92 E-value=39 Score=37.49 Aligned_cols=108 Identities=14% Similarity=0.103 Sum_probs=73.9
Q ss_pred EEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEECC
Q 004217 133 IIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGH 212 (767)
Q Consensus 133 VWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSdd 212 (767)
++|+.+++.+. .|. .-..+.+|+ ++++.++-+..|.|.-+|..+|+........+....++|. |+++++|...
T Consensus 189 vidv~s~evl~--~GL-smPhSPRWh--dgrLwvldsgtGev~~vD~~~G~~e~Va~vpG~~rGL~f~--G~llvVgmSk 261 (335)
T TIGR03032 189 VIDIPSGEVVA--SGL-SMPHSPRWY--QGKLWLLNSGRGELGYVDPQAGKFQPVAFLPGFTRGLAFA--GDFAFVGLSK 261 (335)
T ss_pred EEEeCCCCEEE--cCc-cCCcCCcEe--CCeEEEEECCCCEEEEEcCCCCcEEEEEECCCCCccccee--CCEEEEEecc
Confidence 36777766442 222 123355676 4889999999999999999888777666666788889998 8888776421
Q ss_pred ---------------------cEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCC
Q 004217 213 ---------------------KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAA 248 (767)
Q Consensus 213 ---------------------~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~ 248 (767)
+|.|.|+++++.+. ...+.+.-..++.|++-|.-+
T Consensus 262 ~R~~~~f~glpl~~~l~~~~CGv~vidl~tG~vv~-~l~feg~v~EifdV~vLPg~r 317 (335)
T TIGR03032 262 LRESRVFGGLPIEERLDALGCGVAVIDLNSGDVVH-WLRFEGVIEEIYDVAVLPGVR 317 (335)
T ss_pred ccCCCCcCCCchhhhhhhhcccEEEEECCCCCEEE-EEEeCCceeEEEEEEEecCCC
Confidence 27778888887655 233444556677777777643
No 442
>PHA03098 kelch-like protein; Provisional
Probab=72.39 E-value=1.2e+02 Score=35.64 Aligned_cols=126 Identities=13% Similarity=0.057 Sum_probs=64.4
Q ss_pred eEEEEeCCCCC------CCCCCCCeEEEEECCCCCeEEEEeCC-----CeEEEEECCCCeEEE--EEccCCCCcEEEEEc
Q 004217 92 SLHHLRPKYCP------LSPPPRSTIAAAFSPDGKTLASTHGD-----HTVKIIDCQTGSCLK--VLHGHRRTPWVVRFH 158 (767)
Q Consensus 92 sIrlWd~~t~~------L~gH~~sVtsVaFSpDG~~LASgs~D-----GtVrVWDl~tg~~l~--~L~gH~~~V~sLafs 158 (767)
.+..||..+.+ +.........+.+ +++.++.|+.+ ..+..||..+++-.. .+....... +++.
T Consensus 312 ~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~-~~~~- 387 (534)
T PHA03098 312 SVVSYDTKTKSWNKVPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNP-CVVN- 387 (534)
T ss_pred cEEEEeCCCCeeeECCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccc-eEEE-
Confidence 46777876652 1111112222222 67778888765 357788887765321 111111111 2222
Q ss_pred cCCCcEEEEEeCC------CeEEEEECCCCeEEEeec--CCCCeEEEEEcCCCCEEEEEECC---------cEEEEEcCC
Q 004217 159 PLNPTIIASGSLD------HEVRLWNASTAECIGSRD--FYRPIASIAFHASGELLAVASGH---------KLYIWRYNM 221 (767)
Q Consensus 159 P~dg~lLaSgS~D------GtVrIWDl~tg~~i~~l~--h~~~VtsVafSPdG~~LAsgSdd---------~V~VWDl~t 221 (767)
- ++++++.|+.+ ..+..||..+.+....-. ....-.+++ .-++++.+.|+.+ .+.+||..+
T Consensus 388 ~-~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~ 465 (534)
T PHA03098 388 V-NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAI-YHDGKIYVIGGISYIDNIKVYNIVESYNPVT 465 (534)
T ss_pred E-CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEE-EECCEEEEECCccCCCCCcccceEEEecCCC
Confidence 2 56777777742 468899988766543321 111111222 2355666666521 278888776
Q ss_pred Cc
Q 004217 222 RE 223 (767)
Q Consensus 222 ~~ 223 (767)
.+
T Consensus 466 ~~ 467 (534)
T PHA03098 466 NK 467 (534)
T ss_pred Cc
Confidence 54
No 443
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=72.28 E-value=79 Score=34.51 Aligned_cols=114 Identities=11% Similarity=0.185 Sum_probs=69.2
Q ss_pred CeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEe------CCCeEEEEECCCCeEEEeec-----CCCCeEEE
Q 004217 129 HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGS------LDHEVRLWNASTAECIGSRD-----FYRPIASI 197 (767)
Q Consensus 129 GtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS------~DGtVrIWDl~tg~~i~~l~-----h~~~VtsV 197 (767)
..|++||..+.+-...-.+-.+.|..+.|.. +.++++.|. ....+..||+.+......-. ..++|..+
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~-~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~ 94 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWAS-NNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTAL 94 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEec-CCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEE
Confidence 4699999887765544455667899999986 777888775 45678999998876533322 24778888
Q ss_pred EEcC-CC-CEEEEEE-C-Cc--EEEEEcCCCccccCCeEEecCCCCeEEEEEcc
Q 004217 198 AFHA-SG-ELLAVAS-G-HK--LYIWRYNMREETSSPRIVLRTRRSLRAVHFHP 245 (767)
Q Consensus 198 afSP-dG-~~LAsgS-d-d~--V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSP 245 (767)
.+.. |+ ++.+.|. . +. |..||=.+-..+. .........|+.+.+-|
T Consensus 95 ~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~--~~~~~~~t~I~~l~~~~ 146 (281)
T PF12768_consen 95 TFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIG--SDILGSGTTIRGLQVLP 146 (281)
T ss_pred EeeccCCceEEEeceecCCCceEEEEcCCceEecc--ccccCCCCEEEEEEEEe
Confidence 7743 33 3444444 2 22 8888654433322 00122244566655443
No 444
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=70.32 E-value=0.84 Score=52.40 Aligned_cols=143 Identities=11% Similarity=0.149 Sum_probs=97.1
Q ss_pred CCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEE
Q 004217 106 PPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECI 185 (767)
Q Consensus 106 H~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i 185 (767)
+-..-....|-+.+.-++.++.+..|..||-. ++....+. .++....++|.-.....++.+-..+.+.+||+.+..-.
T Consensus 33 alv~pi~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytq 110 (615)
T KOG2247|consen 33 ALVGPIIHRWRPEGHNLAVACANTIVIYYDKA-GQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQ 110 (615)
T ss_pred hccccceeeEecCCCceehhhhhhHHHhhhhh-cceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHH
Confidence 33444556777777778888888899999954 44333332 45566778888744455666778899999999864322
Q ss_pred E-eecCCCCeEEEEEcCCCCEEEEEEC-CcEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEE
Q 004217 186 G-SRDFYRPIASIAFHASGELLAVASG-HKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLT 253 (767)
Q Consensus 186 ~-~l~h~~~VtsVafSPdG~~LAsgSd-d~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaS 253 (767)
. .++....-.-+.|++-+..++.+.. +.+.|++..+...+. ....|...++++++.+.+..++..
T Consensus 111 qLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~ii---v~Gkh~RRgtq~av~lEd~vil~d 177 (615)
T KOG2247|consen 111 QLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRII---VMGKHQRRGTQIAVTLEDYVILCD 177 (615)
T ss_pred HHhccCcchHHHHhhccCCccccccccccceEEEeccchhhhh---hhcccccceeEEEecccceeeecC
Confidence 2 2222222233779998888888874 449999988776544 344489999999999988755443
No 445
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=70.19 E-value=29 Score=40.70 Aligned_cols=79 Identities=14% Similarity=0.110 Sum_probs=54.3
Q ss_pred CeEEEEECCCCCeEEEEeCCCeEEEEE---------CCCCeEEEE----------Ec-cCCCCcEEEEEccCC--CcEEE
Q 004217 109 STIAAAFSPDGKTLASTHGDHTVKIID---------CQTGSCLKV----------LH-GHRRTPWVVRFHPLN--PTIIA 166 (767)
Q Consensus 109 sVtsVaFSpDG~~LASgs~DGtVrVWD---------l~tg~~l~~----------L~-gH~~~V~sLafsP~d--g~lLa 166 (767)
.|..+..|+.|..++-.+.+|.+.++= +++|+.+.. |. ...-.+...+|||+. +..+.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 578889999999999999998766543 234432211 11 111246678999944 46777
Q ss_pred EEeCCCeEEEEECCCCeEEEe
Q 004217 167 SGSLDHEVRLWNASTAECIGS 187 (767)
Q Consensus 167 SgS~DGtVrIWDl~tg~~i~~ 187 (767)
.-+.|++||+||+.....+..
T Consensus 185 iL~sdnviRiy~lS~~telyl 205 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEPTELYL 205 (741)
T ss_pred EEecCcEEEEEecCCcchhhc
Confidence 778899999999987665543
No 446
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=70.14 E-value=22 Score=26.15 Aligned_cols=40 Identities=33% Similarity=0.498 Sum_probs=28.2
Q ss_pred CCCCeEEEEe-CCCeEEEEECCCCeEEEEEccCCCCcEEEEE
Q 004217 117 PDGKTLASTH-GDHTVKIIDCQTGSCLKVLHGHRRTPWVVRF 157 (767)
Q Consensus 117 pDG~~LASgs-~DGtVrVWDl~tg~~l~~L~gH~~~V~sLaf 157 (767)
||+++|+++. .+++|.++|..+++.+..+.. ......+.|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v-g~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV-GGYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC-CCCCceEEe
Confidence 5677666654 578999999999988877765 333445554
No 447
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=70.11 E-value=1.9e+02 Score=33.19 Aligned_cols=135 Identities=10% Similarity=-0.010 Sum_probs=77.9
Q ss_pred EcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCe-----EEEEEcc-
Q 004217 78 RDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS-----CLKVLHG- 147 (767)
Q Consensus 78 sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~-----~l~~L~g- 147 (767)
..++..++.+.....++-||.-.. .-......+.++.|.+++.+++++ .+|.+. |....++ ....+..
T Consensus 247 ~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~~f~~~~~~ 324 (398)
T PLN00033 247 SPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEEDFDFEEADIK 324 (398)
T ss_pred cCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCcccccceeecccC
Confidence 345555555544444444554221 112334568999999999887765 556644 3444453 2222221
Q ss_pred -CCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEee----cCCCCeEEEEEcCCCCEEEEEECCcEEEE
Q 004217 148 -HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR----DFYRPIASIAFHASGELLAVASGHKLYIW 217 (767)
Q Consensus 148 -H~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l----~h~~~VtsVafSPdG~~LAsgSdd~V~VW 217 (767)
-...+..+.|.+ ++..+++ +.+|.+.... ..++.-... ......+.+.|.++++.+++|.++.|.-|
T Consensus 325 ~~~~~l~~v~~~~-d~~~~a~-G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~G~il~~ 396 (398)
T PLN00033 325 SRGFGILDVGYRS-KKEAWAA-GGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGNDGVLLRY 396 (398)
T ss_pred CCCcceEEEEEcC-CCcEEEE-ECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEeCCcEEEEe
Confidence 123488899987 6665555 5677666553 344443332 22456789999888888888876665443
No 448
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=69.86 E-value=0.73 Score=52.87 Aligned_cols=137 Identities=13% Similarity=0.121 Sum_probs=97.3
Q ss_pred eEEEEEEcCCCEEEEEeCCCeEEEEeCCCCCCC--CCCCCeEEEEECCCCCeEE-EEeCCCeEEEEECCCCeEEE-EEcc
Q 004217 72 QIFEAGRDARRGLASWVEAESLHHLRPKYCPLS--PPPRSTIAAAFSPDGKTLA-STHGDHTVKIIDCQTGSCLK-VLHG 147 (767)
Q Consensus 72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~L~--gH~~sVtsVaFSpDG~~LA-Sgs~DGtVrVWDl~tg~~l~-~L~g 147 (767)
++.......+..++.+..+..+..||-...... ..++...+++|..+|..++ .+-..+.+.+||+.+..... .+.+
T Consensus 37 pi~~~w~~e~~nlavaca~tiv~~YD~agq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg 116 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVACANTIVIYYDKAGQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGG 116 (615)
T ss_pred cceeeEecCCCceehhhhhhHHHhhhhhcceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccC
Confidence 444555555555777778888888887655322 3466778899999887654 45667899999997643211 1111
Q ss_pred -CCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec-CCCCeEEEEEcCCCCEEEEEEC
Q 004217 148 -HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASG 211 (767)
Q Consensus 148 -H~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~-h~~~VtsVafSPdG~~LAsgSd 211 (767)
|.... +.|++ +...++.+-..+.+.|++..+.+.+...+ |...+.+++|.+.+..+..+.+
T Consensus 117 ~~s~sl--l~wsK-g~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~dcd 179 (615)
T KOG2247|consen 117 TSSKSL--LAWSK-GTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCDCD 179 (615)
T ss_pred cchHHH--Hhhcc-CCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeecCcH
Confidence 22222 77998 88888888899999999998877777766 8999999999998766554443
No 449
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=68.10 E-value=40 Score=37.25 Aligned_cols=105 Identities=12% Similarity=0.200 Sum_probs=57.4
Q ss_pred CcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeE---EEee-----cCCCCeEEEEEcCC----CCEEEEEE-C------
Q 004217 151 TPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC---IGSR-----DFYRPIASIAFHAS----GELLAVAS-G------ 211 (767)
Q Consensus 151 ~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~---i~~l-----~h~~~VtsVafSPd----G~~LAsgS-d------ 211 (767)
..+.|+|.| ++++|++ ...|.|++++ ..+.. +..+ ........++++|+ +.+.+..+ .
T Consensus 3 ~P~~~a~~p-dG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~ 79 (331)
T PF07995_consen 3 NPRSMAFLP-DGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGD 79 (331)
T ss_dssp SEEEEEEET-TSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSS
T ss_pred CceEEEEeC-CCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCC
Confidence 467899999 7877775 5699999999 44443 2222 13456789999995 33322222 1
Q ss_pred --CcEEEEEcCCC--ccc--cCC-eEEec---CCCCeEEEEEccCCCeEEEEEeeCC
Q 004217 212 --HKLYIWRYNMR--EET--SSP-RIVLR---TRRSLRAVHFHPHAAPLLLTAEVND 258 (767)
Q Consensus 212 --d~V~VWDl~t~--~~~--~~~-~~l~~---h~~~VtsVaFSPDG~~LlaSgsvwd 258 (767)
..|.-|.+... ... ... ..... ....-..|.|.|||..+++.++..+
T Consensus 80 ~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~ 136 (331)
T PF07995_consen 80 NDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGN 136 (331)
T ss_dssp EEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTT
T ss_pred cceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCC
Confidence 12554554433 110 000 11111 2345567999999987777776444
No 450
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=67.78 E-value=61 Score=37.33 Aligned_cols=89 Identities=22% Similarity=0.270 Sum_probs=58.9
Q ss_pred EEEECCCCCeEEEEeCCCeEEE---EECC-----CCeEEEEEcc---CC--CCcEEEEEccC----------CCcEEEEE
Q 004217 112 AAAFSPDGKTLASTHGDHTVKI---IDCQ-----TGSCLKVLHG---HR--RTPWVVRFHPL----------NPTIIASG 168 (767)
Q Consensus 112 sVaFSpDG~~LASgs~DGtVrV---WDl~-----tg~~l~~L~g---H~--~~V~sLafsP~----------dg~lLaSg 168 (767)
.++.+|++..||.+..+..|.+ |+.. .+.......+ +. ..|+++.|-|. |...++.|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 4678899999999988776665 6441 1222222221 21 46777776552 45789999
Q ss_pred eCCCeEEEEECCCCeEEE-eecCCCCeEEEEEcC
Q 004217 169 SLDHEVRLWNASTAECIG-SRDFYRPIASIAFHA 201 (767)
Q Consensus 169 S~DGtVrIWDl~tg~~i~-~l~h~~~VtsVafSP 201 (767)
..+|.|++|.. +|..+. ..-|..+|..+....
T Consensus 86 ~ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~~~ 118 (415)
T PF14655_consen 86 TSSGYVRFYTE-NGVLLLSQLLHEEPVLKIKCRS 118 (415)
T ss_pred ecccEEEEEec-cchHHHHHhcCccceEEEEecc
Confidence 99999999987 444443 355888888887643
No 451
>PHA03098 kelch-like protein; Provisional
Probab=67.55 E-value=82 Score=36.87 Aligned_cols=126 Identities=14% Similarity=0.125 Sum_probs=63.0
Q ss_pred eEEEEeCCCCCC---C--CCCCCeEEEEECCCCCeEEEEeCC------CeEEEEECCCCeEEEE--EccCCCCcEEEEEc
Q 004217 92 SLHHLRPKYCPL---S--PPPRSTIAAAFSPDGKTLASTHGD------HTVKIIDCQTGSCLKV--LHGHRRTPWVVRFH 158 (767)
Q Consensus 92 sIrlWd~~t~~L---~--gH~~sVtsVaFSpDG~~LASgs~D------GtVrVWDl~tg~~l~~--L~gH~~~V~sLafs 158 (767)
.+..||..+.+. . .+...-.+++. -+++..+.|+.+ ..+..||..+++-... +.........+..
T Consensus 359 ~v~~yd~~~~~W~~~~~lp~~r~~~~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~- 436 (534)
T PHA03098 359 TVESWKPGESKWREEPPLIFPRYNPCVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYH- 436 (534)
T ss_pred eEEEEcCCCCceeeCCCcCcCCccceEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEE-
Confidence 467788776521 1 11221122222 356777777732 4688899887653221 1111111122222
Q ss_pred cCCCcEEEEEeCC--------CeEEEEECCCCeEEEee--cCCCCeEEEEEcCCCCEEEEEECC------cEEEEEcCCC
Q 004217 159 PLNPTIIASGSLD--------HEVRLWNASTAECIGSR--DFYRPIASIAFHASGELLAVASGH------KLYIWRYNMR 222 (767)
Q Consensus 159 P~dg~lLaSgS~D--------GtVrIWDl~tg~~i~~l--~h~~~VtsVafSPdG~~LAsgSdd------~V~VWDl~t~ 222 (767)
++.+++.|+.+ ..+.+||..+++....- .....-.+++. -++++++.|+.+ .|.+||..+.
T Consensus 437 --~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 437 --DGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI-FNNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred --CCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE-ECCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 56777777643 23888998877654432 11111111221 256666666532 3777776654
No 452
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=66.70 E-value=40 Score=35.26 Aligned_cols=67 Identities=9% Similarity=0.065 Sum_probs=43.2
Q ss_pred ECCCCCeEEEEeCCCeEEEEECCCCeEEEEE-------c-------cCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECC
Q 004217 115 FSPDGKTLASTHGDHTVKIIDCQTGSCLKVL-------H-------GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAS 180 (767)
Q Consensus 115 FSpDG~~LASgs~DGtVrVWDl~tg~~l~~L-------~-------gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~ 180 (767)
+..++++|++-..+|.+++||+.+++.+..- . .....|..+.++. +|.-+++-+ +|....||..
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~-~G~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTS-NGVPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcC-CCCEEEEEe-CCCEEEeccc
Confidence 3446888888899999999999888754321 1 2345566666665 555555543 4566777655
Q ss_pred CCe
Q 004217 181 TAE 183 (767)
Q Consensus 181 tg~ 183 (767)
-+.
T Consensus 96 L~~ 98 (219)
T PF07569_consen 96 LGC 98 (219)
T ss_pred cce
Confidence 433
No 453
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=65.62 E-value=22 Score=41.86 Aligned_cols=73 Identities=19% Similarity=0.311 Sum_probs=45.3
Q ss_pred CCCCeEEEEeCCCeEEEEECCC----CeEEE-EEccC---------------------CCCcEEEEEcc---CCCcEEEE
Q 004217 117 PDGKTLASTHGDHTVKIIDCQT----GSCLK-VLHGH---------------------RRTPWVVRFHP---LNPTIIAS 167 (767)
Q Consensus 117 pDG~~LASgs~DGtVrVWDl~t----g~~l~-~L~gH---------------------~~~V~sLafsP---~dg~lLaS 167 (767)
.+...|+.+..||.+...+... +.... .+... ...+..+.++. .+..++++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 4677888888999888877654 22221 11110 12344455544 25689999
Q ss_pred EeCCCeEEEEECCCCeEEEeec
Q 004217 168 GSLDHEVRLWNASTAECIGSRD 189 (767)
Q Consensus 168 gS~DGtVrIWDl~tg~~i~~l~ 189 (767)
.+.|+++|+||+.+++++....
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEec
Confidence 9999999999999999977654
No 454
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=65.41 E-value=5.9 Score=48.68 Aligned_cols=112 Identities=12% Similarity=0.205 Sum_probs=66.0
Q ss_pred eEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEE-----------EccCCCcEEEEEeCCCeEEEEE
Q 004217 110 TIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVR-----------FHPLNPTIIASGSLDHEVRLWN 178 (767)
Q Consensus 110 VtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLa-----------fsP~dg~lLaSgS~DGtVrIWD 178 (767)
|...-|-++.-++..+-.+++|++.+..+... ..+++|...+..++ .+| |+..|+..+.||.++.|.
T Consensus 186 V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSp-DGtv~a~a~~dG~v~f~Q 263 (1283)
T KOG1916|consen 186 VSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSP-DGTVFAWAISDGSVGFYQ 263 (1283)
T ss_pred eeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCC-CCcEEEEeecCCccceee
Confidence 33333344666777777788888877654332 44556776665544 477 888888888999888887
Q ss_pred CC-CCe----EEEeec-CC-CC-eEEEEEcCC-------C--CEEEEEEC-Cc-EEEEEcCCCcc
Q 004217 179 AS-TAE----CIGSRD-FY-RP-IASIAFHAS-------G--ELLAVASG-HK-LYIWRYNMREE 224 (767)
Q Consensus 179 l~-tg~----~i~~l~-h~-~~-VtsVafSPd-------G--~~LAsgSd-d~-V~VWDl~t~~~ 224 (767)
+. +++ |....+ |. .+ |..+ |+.+ + .+++++++ ++ +++|.....++
T Consensus 264 iyi~g~~~~rclhewkphd~~p~vC~l-c~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~C 327 (1283)
T KOG1916|consen 264 IYITGKIVHRCLHEWKPHDKHPRVCWL-CHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQC 327 (1283)
T ss_pred eeeeccccHhhhhccCCCCCCCceeee-eccccccCCccceeEEEEecccCCcceeEeeccchhh
Confidence 64 232 333332 33 22 2222 3322 1 24566664 33 99998665554
No 455
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=63.22 E-value=98 Score=38.45 Aligned_cols=112 Identities=9% Similarity=0.082 Sum_probs=73.4
Q ss_pred CeEEEEECC-CCCeEEEEeCCCeEEEEECCCC-----eEEEEEccCCCCc----------EEEEEccCCCcEEEEEeCCC
Q 004217 109 STIAAAFSP-DGKTLASTHGDHTVKIIDCQTG-----SCLKVLHGHRRTP----------WVVRFHPLNPTIIASGSLDH 172 (767)
Q Consensus 109 sVtsVaFSp-DG~~LASgs~DGtVrVWDl~tg-----~~l~~L~gH~~~V----------~sLafsP~dg~lLaSgS~DG 172 (767)
+..+++|+| +.+.||.....|.-.|||+... ..+.....+.+.+ ..+.|.+ +.+.|+.++ ..
T Consensus 147 ~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~-~~~~lLv~~-r~ 224 (765)
T PF10214_consen 147 PHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVS-DSNRLLVCN-RS 224 (765)
T ss_pred ccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecC-CCCEEEEEc-CC
Confidence 577999999 7789999999999999999211 1111111122222 3678887 656666554 45
Q ss_pred eEEEEECCCCeEEE---eecCCCCeEEEEEcCCC-CEEEEEECCcEEEEEcCCC
Q 004217 173 EVRLWNASTAECIG---SRDFYRPIASIAFHASG-ELLAVASGHKLYIWRYNMR 222 (767)
Q Consensus 173 tVrIWDl~tg~~i~---~l~h~~~VtsVafSPdG-~~LAsgSdd~V~VWDl~t~ 222 (767)
.+.++|+.+..... .......|..+.-+|+. .+++.-....|.+.|+...
T Consensus 225 ~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~~ 278 (765)
T PF10214_consen 225 KLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDVKSS 278 (765)
T ss_pred ceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEecCeEEEEEccCC
Confidence 68899999876533 23345678888888873 2444444566888888764
No 456
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=63.20 E-value=27 Score=25.64 Aligned_cols=39 Identities=13% Similarity=0.093 Sum_probs=27.5
Q ss_pred CCcEEEEEeCCCeEEEEECCCCeEEEeecCCCCeEEEEE
Q 004217 161 NPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAF 199 (767)
Q Consensus 161 dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~~VtsVaf 199 (767)
+..++++...+++|.++|..+++.+..+.-......++|
T Consensus 3 ~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 3 GTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred CCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 344566666789999999999888887665444455554
No 457
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=62.26 E-value=8.9 Score=47.23 Aligned_cols=103 Identities=17% Similarity=0.296 Sum_probs=63.4
Q ss_pred CEEEEEeCCCeEEEEeCCCC---CCCCCCCCeEEEE-----------ECCCCCeEEEEeCCCeEEEEECC-----CCeEE
Q 004217 82 RGLASWVEAESLHHLRPKYC---PLSPPPRSTIAAA-----------FSPDGKTLASTHGDHTVKIIDCQ-----TGSCL 142 (767)
Q Consensus 82 ~~LaSgs~DgsIrlWd~~t~---~L~gH~~sVtsVa-----------FSpDG~~LASgs~DGtVrVWDl~-----tg~~l 142 (767)
.++-.+..++.|++...... -+.+|...+..++ .||||+.|+.++.||.|+.|-+. ..+|+
T Consensus 196 ~~ic~~~~~~~i~lL~~~ra~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rcl 275 (1283)
T KOG1916|consen 196 VYICYGLKGGEIRLLNINRALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCL 275 (1283)
T ss_pred ceeeeccCCCceeEeeechHHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhh
Confidence 44555566777776665443 2446776665544 58999999999999998888653 23456
Q ss_pred EEEccCCCCc-EEEEEccCCC---------cEEEEEe-CCCeEEEEECCCCeEE
Q 004217 143 KVLHGHRRTP-WVVRFHPLNP---------TIIASGS-LDHEVRLWNASTAECI 185 (767)
Q Consensus 143 ~~L~gH~~~V-~sLafsP~dg---------~lLaSgS-~DGtVrIWDl~tg~~i 185 (767)
+..+.|.+.. .|.-|+. +. .++++++ .+..+++|.....+|.
T Consensus 276 hewkphd~~p~vC~lc~~-~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 276 HEWKPHDKHPRVCWLCHK-QEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred hccCCCCCCCceeeeecc-ccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 6667776322 2222332 11 1334433 4566888988777776
No 458
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=59.51 E-value=2.7e+02 Score=30.52 Aligned_cols=70 Identities=20% Similarity=0.310 Sum_probs=52.8
Q ss_pred eEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcE-----EEEEccCCCcEEEEEeCCCeEEEEECC
Q 004217 110 TIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPW-----VVRFHPLNPTIIASGSLDHEVRLWNAS 180 (767)
Q Consensus 110 VtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~-----sLafsP~dg~lLaSgS~DGtVrIWDl~ 180 (767)
|++|....+|.+|+|.-.-.+|.+.|-++|+.+..+.|....-. ..+|-- +.+++-.+..+++|.++|=.
T Consensus 146 iNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QH-dar~~~~~~~~~~IslFDN~ 220 (299)
T PF14269_consen 146 INSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQH-DARFLNESNDDGTISLFDNA 220 (299)
T ss_pred eeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeecc-CCEEeccCCCCCEEEEEcCC
Confidence 78899999999999998888999999999999999977622111 133322 45555556778899999863
No 459
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=59.45 E-value=3.3e+02 Score=31.50 Aligned_cols=139 Identities=12% Similarity=0.165 Sum_probs=85.7
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCCCC--------CCCCCeEEEEECC-----CCCeEEEEeCCCeEEEEECCC--Ce----
Q 004217 80 ARRGLASWVEAESLHHLRPKYCPLS--------PPPRSTIAAAFSP-----DGKTLASTHGDHTVKIIDCQT--GS---- 140 (767)
Q Consensus 80 ~g~~LaSgs~DgsIrlWd~~t~~L~--------gH~~sVtsVaFSp-----DG~~LASgs~DGtVrVWDl~t--g~---- 140 (767)
+...|+.|+..|.+++++....... .-..+|..++.-. +...||. -.-..+.||.+.. |.
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g 114 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHG 114 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccC
Confidence 5678999999999999999654322 2245677776542 2334554 4456888888721 11
Q ss_pred ---EEEEEccCC--CCcEEEEEccCC----CcEEEEEeCCCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEEC
Q 004217 141 ---CLKVLHGHR--RTPWVVRFHPLN----PTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG 211 (767)
Q Consensus 141 ---~l~~L~gH~--~~V~sLafsP~d----g~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSd 211 (767)
.+..+..|. .....+++-|.+ .++++.=+.||.+.+|+-+.-.-.+.+...--...++|.+.-..|++++.
T Consensus 115 ~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~ss 194 (418)
T PF14727_consen 115 NQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTASS 194 (418)
T ss_pred cEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEecC
Confidence 223333343 233344443322 46788889999999999876554444443222234677777777777775
Q ss_pred C-cEEEEEc
Q 004217 212 H-KLYIWRY 219 (767)
Q Consensus 212 d-~V~VWDl 219 (767)
. .|..|..
T Consensus 195 s~~l~~Yky 203 (418)
T PF14727_consen 195 SWTLECYKY 203 (418)
T ss_pred ceeEEEecH
Confidence 5 4777765
No 460
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=58.77 E-value=1e+02 Score=37.87 Aligned_cols=109 Identities=14% Similarity=0.183 Sum_probs=70.8
Q ss_pred CeEEEEECC--CCCeEEEEeCCCeEEEEECCC-------C----e---------EEEEEccCCCCcEEEEEc--cCCCcE
Q 004217 109 STIAAAFSP--DGKTLASTHGDHTVKIIDCQT-------G----S---------CLKVLHGHRRTPWVVRFH--PLNPTI 164 (767)
Q Consensus 109 sVtsVaFSp--DG~~LASgs~DGtVrVWDl~t-------g----~---------~l~~L~gH~~~V~sLafs--P~dg~l 164 (767)
.|+-|.... +...|+.|.+||.|.+|.+++ . + +...+. -...+|+++++ . ..++
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~-~~rl 179 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYK-KSRL 179 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecC-cceE
Confidence 466665554 556789999999999997621 0 0 112222 34578999998 6 6788
Q ss_pred EEEEeCCCeEEEEECCCC--eE--EEeecCCCCeEEEEEcCCC-----C-EEEEEE-CCcEEEEEc
Q 004217 165 IASGSLDHEVRLWNASTA--EC--IGSRDFYRPIASIAFHASG-----E-LLAVAS-GHKLYIWRY 219 (767)
Q Consensus 165 LaSgS~DGtVrIWDl~tg--~~--i~~l~h~~~VtsVafSPdG-----~-~LAsgS-dd~V~VWDl 219 (767)
+|.++....|.||-.... +. .....+...|-+|+|-++. . +|++++ .+.+.+|++
T Consensus 180 IAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 180 IAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 888888888888755432 11 1123466678889887654 2 565566 566777766
No 461
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=58.39 E-value=98 Score=36.49 Aligned_cols=134 Identities=16% Similarity=0.159 Sum_probs=77.8
Q ss_pred EEeCCCeEEEEeCCCCCCC---CCCCCeEEEEECCCCC-------eEEEEeCCCeEEEEECCC-CeEEEEEccCCCCcEE
Q 004217 86 SWVEAESLHHLRPKYCPLS---PPPRSTIAAAFSPDGK-------TLASTHGDHTVKIIDCQT-GSCLKVLHGHRRTPWV 154 (767)
Q Consensus 86 Sgs~DgsIrlWd~~t~~L~---gH~~sVtsVaFSpDG~-------~LASgs~DGtVrVWDl~t-g~~l~~L~gH~~~V~s 154 (767)
.+.+..++..-|++.+++. .-.+.| -+.|.|+.+ .-+.|-.|..|.-.|.+- |..+..-. .+..++.
T Consensus 485 dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e-sKdY~tK 562 (776)
T COG5167 485 DGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE-SKDYKTK 562 (776)
T ss_pred cCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee-ehhcccc
Confidence 4444455555555555322 112223 567777533 123455556666666543 32222111 1122222
Q ss_pred EEEcc---CCCcEEEEEeCCCeEEEEECCCCeEEEee-cCCCCeEEEEEcCCCCEEEEEECCcEEEEEcCC
Q 004217 155 VRFHP---LNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASGHKLYIWRYNM 221 (767)
Q Consensus 155 LafsP---~dg~lLaSgS~DGtVrIWDl~tg~~i~~l-~h~~~VtsVafSPdG~~LAsgSdd~V~VWDl~t 221 (767)
-.|+. +...+++.++..|.|++||--.......+ .....|..+....+|+++++.+...|.+-|++-
T Consensus 563 n~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~yllL~d~~i 633 (776)
T COG5167 563 NKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKNYLLLTDVPI 633 (776)
T ss_pred ccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecceEEEEeccc
Confidence 22322 14578999999999999996543333223 356788899999999999988888888888763
No 462
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=57.70 E-value=1.8e+02 Score=34.96 Aligned_cols=141 Identities=14% Similarity=0.029 Sum_probs=78.0
Q ss_pred CCCEEEEEeCC------CeEEEEeCCCCC------CCCCCCCeEEEEECCCCCeEEEEeCCCe-----EEEEECCCCeEE
Q 004217 80 ARRGLASWVEA------ESLHHLRPKYCP------LSPPPRSTIAAAFSPDGKTLASTHGDHT-----VKIIDCQTGSCL 142 (767)
Q Consensus 80 ~g~~LaSgs~D------gsIrlWd~~t~~------L~gH~~sVtsVaFSpDG~~LASgs~DGt-----VrVWDl~tg~~l 142 (767)
++...+.|+.| .++..||..+.+ +...........+ +|.+.|+|+.||. |-.||..+.+--
T Consensus 332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~ 409 (571)
T KOG4441|consen 332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKWT 409 (571)
T ss_pred CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEE--CCEEEEEeccccccccccEEEecCCCCccc
Confidence 44555566666 346778877653 2112122222222 6888899999864 777887765422
Q ss_pred EEEccCCCCcEEEEEccCCCcEEEEEeCCC------eEEEEECCCCeEEEee--cCCCCeEEEEEcCCCCEEEEEECCc-
Q 004217 143 KVLHGHRRTPWVVRFHPLNPTIIASGSLDH------EVRLWNASTAECIGSR--DFYRPIASIAFHASGELLAVASGHK- 213 (767)
Q Consensus 143 ~~L~gH~~~V~sLafsP~dg~lLaSgS~DG------tVrIWDl~tg~~i~~l--~h~~~VtsVafSPdG~~LAsgSdd~- 213 (767)
. ................++.+.+.|+.|+ +|..||..+++....- .....-..++. -++.+.+.|+.++
T Consensus 410 ~-va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~-~~~~iYvvGG~~~~ 487 (571)
T KOG4441|consen 410 P-VAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAV-LNGKIYVVGGFDGT 487 (571)
T ss_pred c-cCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEE-ECCEEEEECCccCC
Confidence 1 1111112222222222788999988654 5788898887765442 22222222332 2566677776332
Q ss_pred -----EEEEEcCCCcc
Q 004217 214 -----LYIWRYNMREE 224 (767)
Q Consensus 214 -----V~VWDl~t~~~ 224 (767)
|..||..+.+-
T Consensus 488 ~~~~~VE~ydp~~~~W 503 (571)
T KOG4441|consen 488 SALSSVERYDPETNQW 503 (571)
T ss_pred CccceEEEEcCCCCce
Confidence 78888877653
No 463
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=57.53 E-value=3.4e+02 Score=30.98 Aligned_cols=178 Identities=11% Similarity=0.029 Sum_probs=92.0
Q ss_pred eEEEEEEcCCCEEEEEeCCCeEEEEeCC--CC--CCC--------CCCCCeEEEEECCCCCeEEEEeCCCeEEEE--ECC
Q 004217 72 QIFEAGRDARRGLASWVEAESLHHLRPK--YC--PLS--------PPPRSTIAAAFSPDGKTLASTHGDHTVKII--DCQ 137 (767)
Q Consensus 72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~--t~--~L~--------gH~~sVtsVaFSpDG~~LASgs~DGtVrVW--Dl~ 137 (767)
.-.....++....+++..+|-|..-+.. .. ... .-.+.-..++|...+.-|+.+. ...=+| +.+
T Consensus 67 gp~~~v~dg~il~~~g~~~Gwv~~~~~~~s~~~~~~~~~~~~~~e~~CGRPLGl~f~~~ggdL~VaD--AYlGL~~V~p~ 144 (376)
T KOG1520|consen 67 GPYTGVVDGRILKYTGNDDGWVKFADTKDSTNRSQCCDPGSFETEPLCGRPLGIRFDKKGGDLYVAD--AYLGLLKVGPE 144 (376)
T ss_pred CceEEEECCceEEEeccCceEEEEEeccccccccccCCCcceecccccCCcceEEeccCCCeEEEEe--cceeeEEECCC
Confidence 3445566677778888888888777662 11 111 1225567899999775555553 333333 333
Q ss_pred CCeEEEEEccCCC-----CcEEEEEccCCCcEEEE-----------------EeCCCeEEEEECCCCeEEEeecCCCCeE
Q 004217 138 TGSCLKVLHGHRR-----TPWVVRFHPLNPTIIAS-----------------GSLDHEVRLWNASTAECIGSRDFYRPIA 195 (767)
Q Consensus 138 tg~~l~~L~gH~~-----~V~sLafsP~dg~lLaS-----------------gS~DGtVrIWDl~tg~~i~~l~h~~~Vt 195 (767)
.+. ...+..+.. -...+..++ ++.++++ +..+|.+.-||..+......+..-.-.+
T Consensus 145 g~~-a~~l~~~~~G~~~kf~N~ldI~~-~g~vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~~tK~~~VLld~L~F~N 222 (376)
T KOG1520|consen 145 GGL-AELLADEAEGKPFKFLNDLDIDP-EGVVYFTDSSSKYDRRDFVFAALEGDPTGRLFRYDPSTKVTKVLLDGLYFPN 222 (376)
T ss_pred CCc-ceeccccccCeeeeecCceeEcC-CCeEEEeccccccchhheEEeeecCCCccceEEecCcccchhhhhhcccccc
Confidence 332 111111110 112333344 3322222 3345677777776655444444444557
Q ss_pred EEEEcCCCCEEEEEECC--cEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEE
Q 004217 196 SIAFHASGELLAVASGH--KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLT 253 (767)
Q Consensus 196 sVafSPdG~~LAsgSdd--~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaS 253 (767)
.++.|||+.+++.+-.. +|+-|-+...+.-.......+-.+---.|.-+++|.+.+..
T Consensus 223 GlaLS~d~sfvl~~Et~~~ri~rywi~g~k~gt~EvFa~~LPG~PDNIR~~~~G~fWVal 282 (376)
T KOG1520|consen 223 GLALSPDGSFVLVAETTTARIKRYWIKGPKAGTSEVFAEGLPGYPDNIRRDSTGHFWVAL 282 (376)
T ss_pred cccCCCCCCEEEEEeeccceeeeeEecCCccCchhhHhhcCCCCCcceeECCCCCEEEEE
Confidence 78999999998888643 34333344333211011112223333455667889876654
No 464
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=57.53 E-value=2e+02 Score=32.02 Aligned_cols=113 Identities=15% Similarity=0.188 Sum_probs=68.8
Q ss_pred CeEEEEECCCCCeEEEEeCCCeEEEEECC------CC-eEEEEEcc-----CCCCcEEEEEccCCCc------------E
Q 004217 109 STIAAAFSPDGKTLASTHGDHTVKIIDCQ------TG-SCLKVLHG-----HRRTPWVVRFHPLNPT------------I 164 (767)
Q Consensus 109 sVtsVaFSpDG~~LASgs~DGtVrVWDl~------tg-~~l~~L~g-----H~~~V~sLafsP~dg~------------l 164 (767)
.-+.|+|+|.+.+-++....+...+||.. .. ..+..+.. -....+.+.|+. ... .
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~-~~~F~vt~~g~~~~a~ 102 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNG-SDTFVVSGEGITGPSR 102 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeC-CCceEEcCCCccccee
Confidence 35789999988887887778899999986 12 22333332 234678888875 222 3
Q ss_pred EEEEeCCCeEEEEECCCCeE-----EEeec--CCCCe-EEEEEcCC--CCEEEEEE--CCcEEEEEcCCC
Q 004217 165 IASGSLDHEVRLWNASTAEC-----IGSRD--FYRPI-ASIAFHAS--GELLAVAS--GHKLYIWRYNMR 222 (767)
Q Consensus 165 LaSgS~DGtVrIWDl~tg~~-----i~~l~--h~~~V-tsVafSPd--G~~LAsgS--dd~V~VWDl~t~ 222 (767)
++.+++||+|.-|.-.-+.. ...+. ....| ..+++... +.+|..+. .++|.|||-.-.
T Consensus 103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~ 172 (336)
T TIGR03118 103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFR 172 (336)
T ss_pred EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccc
Confidence 67788999999998532221 11222 12333 34455433 55666665 345888875433
No 465
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=54.69 E-value=2e+02 Score=31.40 Aligned_cols=96 Identities=9% Similarity=0.098 Sum_probs=59.5
Q ss_pred CCCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCeEEEEe------CCCeEEEEECCCCeEEEEEcc-----CCCCcE
Q 004217 89 EAESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTLASTH------GDHTVKIIDCQTGSCLKVLHG-----HRRTPW 153 (767)
Q Consensus 89 ~DgsIrlWd~~t~~----L~gH~~sVtsVaFSpDG~~LASgs------~DGtVrVWDl~tg~~l~~L~g-----H~~~V~ 153 (767)
.-..|.+||....+ -.+-.+.|+++.|..+.++++.|. ....+..||+.+.. ...+.+ -.++|.
T Consensus 14 ~C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~-w~~~~~~~s~~ipgpv~ 92 (281)
T PF12768_consen 14 PCPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT-WSSLGGGSSNSIPGPVT 92 (281)
T ss_pred CCCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe-eeecCCcccccCCCcEE
Confidence 34568899977653 224567899999997777777764 35578889988765 334443 236788
Q ss_pred EEEEccCCCc-EEEEEe-CC--CeEEEEECCCCeEE
Q 004217 154 VVRFHPLNPT-IIASGS-LD--HEVRLWNASTAECI 185 (767)
Q Consensus 154 sLafsP~dg~-lLaSgS-~D--GtVrIWDl~tg~~i 185 (767)
.+.+...+.. +++.|. .+ ..|..||=.+...+
T Consensus 93 a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i 128 (281)
T PF12768_consen 93 ALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSI 128 (281)
T ss_pred EEEeeccCCceEEEeceecCCCceEEEEcCCceEec
Confidence 8887543443 444443 23 34666655444333
No 466
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=54.55 E-value=72 Score=31.81 Aligned_cols=30 Identities=30% Similarity=0.363 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCC------EEEEEEC-CcEEEEEcCC
Q 004217 192 RPIASIAFHASGE------LLAVASG-HKLYIWRYNM 221 (767)
Q Consensus 192 ~~VtsVafSPdG~------~LAsgSd-d~V~VWDl~t 221 (767)
..+..++|||.|- +||+-.. +.|.||.-..
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 3788999999652 6666664 4499997554
No 467
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=54.11 E-value=26 Score=41.31 Aligned_cols=40 Identities=30% Similarity=0.424 Sum_probs=30.6
Q ss_pred CCeEEEEECC----CCCeEEEEeCCCeEEEEECCCCeEEEEEcc
Q 004217 108 RSTIAAAFSP----DGKTLASTHGDHTVKIIDCQTGSCLKVLHG 147 (767)
Q Consensus 108 ~sVtsVaFSp----DG~~LASgs~DGtVrVWDl~tg~~l~~L~g 147 (767)
..+..++++. +..+|++.+.|+++|+||+.+++++....-
T Consensus 215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~~~ 258 (547)
T PF11715_consen 215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATIDL 258 (547)
T ss_dssp --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEEET
T ss_pred CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEecc
Confidence 3456677776 778999999999999999999999776643
No 468
>PRK13615 lipoprotein LpqB; Provisional
Probab=53.76 E-value=3.1e+02 Score=32.93 Aligned_cols=138 Identities=13% Similarity=0.031 Sum_probs=82.1
Q ss_pred EEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCC-CeEEEe--
Q 004217 111 IAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST-AECIGS-- 187 (767)
Q Consensus 111 tsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~t-g~~i~~-- 187 (767)
.+++.++|++.+|....++.+.++... +.....+. ...++.-.|.+ ++ .+-+.-.+...++..... ++....
T Consensus 337 ~s~avS~dg~~~A~v~~~~~l~vg~~~-~~~~~~~~--~~~Lt~PS~d~-~g-~vWtv~~g~~~~l~~~~~~G~~~~v~v 411 (557)
T PRK13615 337 DAATLSADGRQAAVRNASGVWSVGDGD-RDAVLLDT--RPGLVAPSLDA-QG-YVWSTPASDPRGLVAWGPDGVGHPVAV 411 (557)
T ss_pred ccceEcCCCceEEEEcCCceEEEecCC-Ccceeecc--CCccccCcCcC-CC-CEEEEeCCCceEEEEecCCCceEEeec
Confidence 788999999999988888888888765 22222233 23456667877 44 455544444455554432 333222
Q ss_pred -ecCCCCeEEEEEcCCCCEEEEEEC----CcEEEEEcCC-Cc---cc-cCCeEEecCCCCeEEEEEccCCCeEEEE
Q 004217 188 -RDFYRPIASIAFHASGELLAVASG----HKLYIWRYNM-RE---ET-SSPRIVLRTRRSLRAVHFHPHAAPLLLT 253 (767)
Q Consensus 188 -l~h~~~VtsVafSPdG~~LAsgSd----d~V~VWDl~t-~~---~~-~~~~~l~~h~~~VtsVaFSPDG~~LlaS 253 (767)
......|..+..|+||..++.-.+ ++|.|=-+.. +. .+ ..+..+......+.++.|..++...+.+
T Consensus 412 ~~~~~~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~~P~~L~~~p~~l~~~l~~v~sl~W~~~~~laVl~ 487 (557)
T PRK13615 412 SWTATGRVVSLEVARDGARVLVQLETGAGPQLLVASIVRDGGVPTSLTTTPLELLASPGTPLDATWVDELDVATLT 487 (557)
T ss_pred cccCCCeeEEEEeCCCccEEEEEEecCCCCEEEEEEEEeCCCcceEeeeccEEcccCcCcceeeEEcCCCEEEEEe
Confidence 124568999999999986665432 3355543322 22 12 1122222223488999999999855554
No 469
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=52.03 E-value=88 Score=36.36 Aligned_cols=145 Identities=12% Similarity=0.033 Sum_probs=87.7
Q ss_pred EEcCCCEEEEEeCCCeEEEEeCCCCCCCCC------CC-C---eE-EEEECCCCCeEEEEeCCCeEEEE-ECCCC-e---
Q 004217 77 GRDARRGLASWVEAESLHHLRPKYCPLSPP------PR-S---TI-AAAFSPDGKTLASTHGDHTVKII-DCQTG-S--- 140 (767)
Q Consensus 77 ~sd~g~~LaSgs~DgsIrlWd~~t~~L~gH------~~-s---Vt-sVaFSpDG~~LASgs~DGtVrVW-Dl~tg-~--- 140 (767)
...+|+.+..-+. ..+.++++...++... .+ . |+ .+..-..|.-|..++.||.|.-| |+..+ .
T Consensus 228 L~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr~~~~p~l 306 (733)
T COG4590 228 LTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDVRRDGQPHL 306 (733)
T ss_pred ECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeeeecCCCCcc
Confidence 4457777776554 6788888876643321 11 1 11 11122246667888899998887 44432 1
Q ss_pred -EEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEECCcEEEEEc
Q 004217 141 -CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRY 219 (767)
Q Consensus 141 -~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSdd~V~VWDl 219 (767)
.++.++-....+..+.=.. +.+-+++-+.+|++.++.-...+.+..-.....+.-+++||++.++++-..++|+++.+
T Consensus 307 ~h~R~f~l~pa~~~~l~pe~-~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~~~~~~~~Sp~~~~Ll~e~~gki~~~~l 385 (733)
T COG4590 307 NHIRNFKLAPAEVQFLLPET-NRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQAPQLVAMSPNQAYLLSEDQGKIRLAQL 385 (733)
T ss_pred eeeeccccCcccceeecccc-ccceEEEEcCCCceeeeecccCcceehhhhhcCcceeeeCcccchheeecCCceEEEEe
Confidence 2233332223343332222 45567778888888888665544443323334667789999999999888888999988
Q ss_pred CCCc
Q 004217 220 NMRE 223 (767)
Q Consensus 220 ~t~~ 223 (767)
++..
T Consensus 386 ~Nr~ 389 (733)
T COG4590 386 ENRN 389 (733)
T ss_pred cCCC
Confidence 7654
No 470
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=51.62 E-value=1e+02 Score=32.98 Aligned_cols=129 Identities=15% Similarity=0.192 Sum_probs=70.2
Q ss_pred EEEEECCCCeEEEEEccCCC-CcEEEEEccCCCcEEEEEeC-C--CeEEEEECCC--CeEEE-----eecCCCCeEEEEE
Q 004217 131 VKIIDCQTGSCLKVLHGHRR-TPWVVRFHPLNPTIIASGSL-D--HEVRLWNAST--AECIG-----SRDFYRPIASIAF 199 (767)
Q Consensus 131 VrVWDl~tg~~l~~L~gH~~-~V~sLafsP~dg~lLaSgS~-D--GtVrIWDl~t--g~~i~-----~l~h~~~VtsVaf 199 (767)
-.+||+.+++. +.+.-.+. .+.+-.|-+ |++++.+|+. | ..+++++..+ +.+.. .+.....-.++.-
T Consensus 48 s~~yD~~tn~~-rpl~v~td~FCSgg~~L~-dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~ 125 (243)
T PF07250_consen 48 SVEYDPNTNTF-RPLTVQTDTFCSGGAFLP-DGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATT 125 (243)
T ss_pred EEEEecCCCcE-EeccCCCCCcccCcCCCC-CCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceE
Confidence 46799988764 33332222 233345678 8999998775 2 4588887654 11111 1334445556667
Q ss_pred cCCCCEEEEEECCc--EEEEEcCCCcc-ccCCeEEec----C-CCCeEEEEEccCCCeEEEEEe---eCCcCC
Q 004217 200 HASGELLAVASGHK--LYIWRYNMREE-TSSPRIVLR----T-RRSLRAVHFHPHAAPLLLTAE---VNDLDS 261 (767)
Q Consensus 200 SPdG~~LAsgSdd~--V~VWDl~t~~~-~~~~~~l~~----h-~~~VtsVaFSPDG~~LlaSgs---vwdl~s 261 (767)
-|||+.|+.|+... ..+|.-+.... ......+.. . ...---+...|||+.++.+.. ++|...
T Consensus 126 L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s~i~d~~~ 198 (243)
T PF07250_consen 126 LPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGSIIYDYKT 198 (243)
T ss_pred CCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCcEEEeCCC
Confidence 78999999998654 66665432211 100001110 1 111225667899996666543 555553
No 471
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=48.79 E-value=3.6e+02 Score=32.59 Aligned_cols=144 Identities=19% Similarity=0.194 Sum_probs=81.1
Q ss_pred CCCCCCCCeEEEEECCCCCeEEEEeCCC----eEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEe------CC
Q 004217 102 PLSPPPRSTIAAAFSPDGKTLASTHGDH----TVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGS------LD 171 (767)
Q Consensus 102 ~L~gH~~sVtsVaFSpDG~~LASgs~DG----tVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS------~D 171 (767)
....+...+..+.|+|||+.++..+.++ .+.+.+.. + .+..+...+....|+| .++.++... .|
T Consensus 54 ~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l~~~~-g----~~~~~~~~v~~~~~~~-~g~~~~~~~~~~~~~~~ 127 (620)
T COG1506 54 RLLTFGGGVSELRWSPDGSVLAFVSTDGGRVAQLYLVDVG-G----LITKTAFGVSDARWSP-DGDRIAFLTAEGASKRD 127 (620)
T ss_pred cccccCCcccccccCCCCCEEEEEeccCCCcceEEEEecC-C----ceeeeecccccceeCC-CCCeEEEEecccccccC
Confidence 3455777889999999999998877433 23444433 3 3334556677888998 555555421 12
Q ss_pred Ce-------EEEEECCCC-eEE------------EeecCCCCeEEEEEcCCCCEEEEEE--CC--c----EEEEEcCCCc
Q 004217 172 HE-------VRLWNASTA-ECI------------GSRDFYRPIASIAFHASGELLAVAS--GH--K----LYIWRYNMRE 223 (767)
Q Consensus 172 Gt-------VrIWDl~tg-~~i------------~~l~h~~~VtsVafSPdG~~LAsgS--dd--~----V~VWDl~t~~ 223 (767)
+. +.+|....+ +.. ........+....++++++.++... .+ . ..++...++.
T Consensus 128 ~~~~~~~~~~~~~~~~~g~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (620)
T COG1506 128 GGDHLFVDRLPVWFDGRGGERSDLYVVDIESKLIKLGLGNLDVVSFATDGDGRLVASIRLDDDADPWVTNLYVLIEGNGE 207 (620)
T ss_pred CceeeeecccceeecCCCCcccceEEEccCcccccccCCCCceeeeeeCCCCceeEEeeeccccCCceEeeEEEecCCCc
Confidence 22 334433333 111 1112334566667777777666654 21 1 3333332222
Q ss_pred cccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217 224 ETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (767)
Q Consensus 224 ~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs 255 (767)
..........+..+.|.++|+.+...+.
T Consensus 208 ----~~~~~~~~~~~~~~~~~~~gk~~~~~~~ 235 (620)
T COG1506 208 ----LESLTPGEGSISKLAFDADGKSIALLGT 235 (620)
T ss_pred ----eEEEcCCCceeeeeeeCCCCCeeEEecc
Confidence 2244555667999999999996655443
No 472
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=48.57 E-value=3.8e+02 Score=29.75 Aligned_cols=108 Identities=13% Similarity=0.026 Sum_probs=63.0
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCCC------CCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCC-Cc
Q 004217 80 ARRGLASWVEAESLHHLRPKYCPL------SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRR-TP 152 (767)
Q Consensus 80 ~g~~LaSgs~DgsIrlWd~~t~~L------~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~-~V 152 (767)
....++.+..++.|.-.|.+++.. ......+..-.+..+|+ |+.++.++.+..+|..+|+.+........ .+
T Consensus 67 ~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~ 145 (370)
T COG1520 67 GDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYY 145 (370)
T ss_pred eCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEE
Confidence 444444556666666666665531 11112233323333676 77788889999999989998887765551 11
Q ss_pred EEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecC
Q 004217 153 WVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDF 190 (767)
Q Consensus 153 ~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h 190 (767)
..-..- ....+..++.|+.+...|..+++.....+.
T Consensus 146 ~~~~v~--~~~~v~~~s~~g~~~al~~~tG~~~W~~~~ 181 (370)
T COG1520 146 ASPPVV--GDGTVYVGTDDGHLYALNADTGTLKWTYET 181 (370)
T ss_pred ecCcEE--cCcEEEEecCCCeEEEEEccCCcEEEEEec
Confidence 111111 223344444778888888888888776543
No 473
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=47.49 E-value=4.9e+02 Score=29.84 Aligned_cols=174 Identities=10% Similarity=0.072 Sum_probs=94.6
Q ss_pred CCEEEEEeCCCeEEEEeCCCCCCCCC-CCCeEEEEEC----CCCCe--EEEEeC-C---CeEEEEECC--CCeEEEEEcc
Q 004217 81 RRGLASWVEAESLHHLRPKYCPLSPP-PRSTIAAAFS----PDGKT--LASTHG-D---HTVKIIDCQ--TGSCLKVLHG 147 (767)
Q Consensus 81 g~~LaSgs~DgsIrlWd~~t~~L~gH-~~sVtsVaFS----pDG~~--LASgs~-D---GtVrVWDl~--tg~~l~~L~g 147 (767)
...++...+++-+.+||++-.++... .+.++-++.- -+|+. |+.++. + .+|++|.+. ++. +..+..
T Consensus 68 kSlIigTdK~~GL~VYdL~Gk~lq~~~~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~-L~~v~~ 146 (381)
T PF02333_consen 68 KSLIIGTDKKGGLYVYDLDGKELQSLPVGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGE-LTDVTD 146 (381)
T ss_dssp G-EEEEEETTTEEEEEETTS-EEEEE-SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTE-EEE-CB
T ss_pred cceEEEEeCCCCEEEEcCCCcEEEeecCCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCc-ceEcCC
Confidence 34444555566677777765543322 1333333321 13443 445543 2 479999775 444 333321
Q ss_pred -------CCCCcEEEEEc--cCCCc-EEEEEeCCCeEEEEECC---CC----eEEEeecCCCCeEEEEEcCCCCEEEEEE
Q 004217 148 -------HRRTPWVVRFH--PLNPT-IIASGSLDHEVRLWNAS---TA----ECIGSRDFYRPIASIAFHASGELLAVAS 210 (767)
Q Consensus 148 -------H~~~V~sLafs--P~dg~-lLaSgS~DGtVrIWDl~---tg----~~i~~l~h~~~VtsVafSPdG~~LAsgS 210 (767)
-...++.+++. +.++. +++....+|.+..|.+. .+ +.++.+.....+..+..+....+|..+-
T Consensus 147 ~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~LYvgE 226 (381)
T PF02333_consen 147 PAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGRLYVGE 226 (381)
T ss_dssp TTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEEEEEE
T ss_pred CCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCCEEEec
Confidence 12346777763 43344 56667789988888664 33 4577788888999999999888999998
Q ss_pred CCc-EEEEEcCCCccccCCeE--Eec--CCCCeEEEEEcc--CCC-eEEEEEe
Q 004217 211 GHK-LYIWRYNMREETSSPRI--VLR--TRRSLRAVHFHP--HAA-PLLLTAE 255 (767)
Q Consensus 211 dd~-V~VWDl~t~~~~~~~~~--l~~--h~~~VtsVaFSP--DG~-~LlaSgs 255 (767)
.+. |.-|+.+-......... ..+ ....|-.|+.-. +++ ||++++.
T Consensus 227 E~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQ 279 (381)
T PF02333_consen 227 EDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQ 279 (381)
T ss_dssp TTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEG
T ss_pred CccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcC
Confidence 766 88888864332111111 111 245777777753 444 5666654
No 474
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=46.73 E-value=2.1e+02 Score=35.52 Aligned_cols=72 Identities=11% Similarity=0.140 Sum_probs=46.0
Q ss_pred CCcEEEEEccCCCcEEEEEeCCCeEEEEECCC----------CeE--E-Eee---------cCCCCeEEEEEcCCC---C
Q 004217 150 RTPWVVRFHPLNPTIIASGSLDHEVRLWNAST----------AEC--I-GSR---------DFYRPIASIAFHASG---E 204 (767)
Q Consensus 150 ~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~t----------g~~--i-~~l---------~h~~~VtsVafSPdG---~ 204 (767)
-.|..|.++| ++.+++-.+..+-+ |-.+.. ++. . +.+ .....|..+.|+|.+ .
T Consensus 85 f~v~~i~~n~-~g~~lal~G~~~v~-V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 85 FEVHQISLNP-TGSLLALVGPRGVV-VLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred eeEEEEEECC-CCCEEEEEcCCcEE-EEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 4688899999 88888887776543 333321 111 1 111 133478899999975 3
Q ss_pred -EEEEEECCcEEEEEcCCCc
Q 004217 205 -LLAVASGHKLYIWRYNMRE 223 (767)
Q Consensus 205 -~LAsgSdd~V~VWDl~t~~ 223 (767)
+++-.+|+.+++||+....
T Consensus 163 ~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred eEEEEecCCEEEEEecCCCC
Confidence 4555567779999997544
No 475
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=46.22 E-value=1.8e+02 Score=35.82 Aligned_cols=109 Identities=12% Similarity=0.128 Sum_probs=64.6
Q ss_pred CCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEE
Q 004217 106 PPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECI 185 (767)
Q Consensus 106 H~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i 185 (767)
....++++.-+|.|+-++.++.||.|++|+....+..+... ...+-..+.|.. .-+++...|..+.-|.-. |-..
T Consensus 13 ~~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~-~~~p~~nlv~tn---hgl~~~tsdrr~la~~~d-gvvq 87 (1636)
T KOG3616|consen 13 EDEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICE-EAKPKENLVFTN---HGLVTATSDRRALAWKED-GVVQ 87 (1636)
T ss_pred ccceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhh-hcCCccceeeec---cceEEEeccchhheeecc-Ccch
Confidence 34567888888999999999999999999986544322221 122334455643 346666778888888533 3222
Q ss_pred Eeec----CCCCeEEEEEcCCCCEEEEEECCcEEEEEc
Q 004217 186 GSRD----FYRPIASIAFHASGELLAVASGHKLYIWRY 219 (767)
Q Consensus 186 ~~l~----h~~~VtsVafSPdG~~LAsgSdd~V~VWDl 219 (767)
..+. ......++..+|..+-++..--++|.-+|.
T Consensus 88 qqfdyndqsekefss~~cdptaqnvvgtlcggv~q~dc 125 (1636)
T KOG3616|consen 88 QQFDYNDQSEKEFSSILCDPTAQNVVGTLCGGVEQFDC 125 (1636)
T ss_pred hhccccchhhhhccceecCchhhhhhhhhccceeeehH
Confidence 2222 223445566666665444333445555553
No 476
>smart00020 Tryp_SPc Trypsin-like serine protease. Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. A few, however, are active as single chain molecules, and others are inactive due to substitutions of the catalytic triad residues.
Probab=46.01 E-value=22 Score=35.83 Aligned_cols=71 Identities=21% Similarity=0.362 Sum_probs=42.1
Q ss_pred cchhhhhh-HhhhccceeEEEeccCccceEEeecccccccceeeEEcCceeeeeEEEEEEE---------EecCcEEEEe
Q 004217 636 FGTVLTSR-AIRAAHCLTSIQFSPTSENLLLAYGRRHSSLLKSVLIDGEITVPTYTILEVY---------RVSDMELVRV 705 (767)
Q Consensus 636 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~ 705 (767)
-|.+|..+ .++||||+..-. +..-.+.++.-.+.. .+ ....+++.+++ ...|+.+++.
T Consensus 29 ~GtlIs~~~VLTaahC~~~~~--~~~~~v~~g~~~~~~-------~~---~~~~~~v~~~~~~p~~~~~~~~~DiAll~L 96 (229)
T smart00020 29 GGSLISPRWVLTAAHCVYGSD--PSNIRVRLGSHDLSS-------GE---EGQVIKVSKVIIHPNYNPSTYDNDIALLKL 96 (229)
T ss_pred EEEEecCCEEEECHHHcCCCC--CcceEEEeCcccCCC-------CC---CceEEeeEEEEECCCCCCCCCcCCEEEEEE
Confidence 37777777 899999998765 555566665433222 11 11445566655 3467888875
Q ss_pred ecC--CCCceeeeEe
Q 004217 706 LPS--AEDEVNVACF 718 (767)
Q Consensus 706 ~~~--~~~~~~~~~~ 718 (767)
-.. ..+.|.-+|+
T Consensus 97 ~~~i~~~~~~~pi~l 111 (229)
T smart00020 97 KSPVTLSDNVRPICL 111 (229)
T ss_pred CcccCCCCceeeccC
Confidence 333 2234666665
No 477
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=45.97 E-value=1.7e+02 Score=32.53 Aligned_cols=72 Identities=21% Similarity=0.084 Sum_probs=46.6
Q ss_pred CCCeEEEEeCCCeEEEEECCCCeEEEEEccC--CCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCCC
Q 004217 118 DGKTLASTHGDHTVKIIDCQTGSCLKVLHGH--RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYR 192 (767)
Q Consensus 118 DG~~LASgs~DGtVrVWDl~tg~~l~~L~gH--~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~ 192 (767)
|| .+..+..||.|.-.|.++++.+.....- ...+..-.+.. +++ ++.++.++.+..+|.++|+.+.......
T Consensus 68 dg-~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~-~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~ 141 (370)
T COG1520 68 DG-TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGS-DGK-IYVGSWDGKLYALDASTGTLVWSRNVGG 141 (370)
T ss_pred CC-eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEe-CCe-EEEecccceEEEEECCCCcEEEEEecCC
Confidence 45 4445578888888999888866443221 12222222322 444 7777888899999999999888866444
No 478
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=45.60 E-value=5.4e+02 Score=29.82 Aligned_cols=139 Identities=9% Similarity=0.058 Sum_probs=78.4
Q ss_pred CCCeEEEEeCCCeEEEEECCCCe-----EEEEEccCCCCcEEEEEc---cCCCcEEEEEeCCCeEEEEECCC--Ce----
Q 004217 118 DGKTLASTHGDHTVKIIDCQTGS-----CLKVLHGHRRTPWVVRFH---PLNPTIIASGSLDHEVRLWNAST--AE---- 183 (767)
Q Consensus 118 DG~~LASgs~DGtVrVWDl~tg~-----~l~~L~gH~~~V~sLafs---P~dg~lLaSgS~DGtVrIWDl~t--g~---- 183 (767)
+...|++|+.+|.++||+...+. .+-. ..-+.+|..+..- +......+..-.-..+.+|.+.. +.
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE-~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g 114 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLE-TQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHG 114 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEE-EecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccC
Confidence 34689999999999999986533 1111 2235678777753 21233334445667788887732 11
Q ss_pred -EE---Eeec--CCCCeEEEEEcCCC-----CEEEEEE-CCcEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEE
Q 004217 184 -CI---GSRD--FYRPIASIAFHASG-----ELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLL 251 (767)
Q Consensus 184 -~i---~~l~--h~~~VtsVafSPdG-----~~LAsgS-dd~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~Ll 251 (767)
.. ..++ .......+++-|-| .+|.+-+ |+.+.+|+-+...... .....--..-+.|.+.-..++
T Consensus 115 ~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~----~lp~~llPgPl~Y~~~tDsfv 190 (418)
T PF14727_consen 115 NQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSR----FLPDFLLPGPLCYCPRTDSFV 190 (418)
T ss_pred cEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEE----EcCCCCCCcCeEEeecCCEEE
Confidence 11 1122 33444455554422 3555556 5559999866543211 111122223567888878788
Q ss_pred EEEeeCCcCC
Q 004217 252 LTAEVNDLDS 261 (767)
Q Consensus 252 aSgsvwdl~s 261 (767)
+..+.|.+..
T Consensus 191 t~sss~~l~~ 200 (418)
T PF14727_consen 191 TASSSWTLEC 200 (418)
T ss_pred EecCceeEEE
Confidence 8777777664
No 479
>PHA02790 Kelch-like protein; Provisional
Probab=43.82 E-value=3.6e+02 Score=31.41 Aligned_cols=134 Identities=8% Similarity=0.011 Sum_probs=67.0
Q ss_pred CCCEEEEEeC--CCeEEEEeCCCCC---CCC--CCC-CeEEEEECCCCCeEEEEeCCC---eEEEEECCCCeEEEE--Ec
Q 004217 80 ARRGLASWVE--AESLHHLRPKYCP---LSP--PPR-STIAAAFSPDGKTLASTHGDH---TVKIIDCQTGSCLKV--LH 146 (767)
Q Consensus 80 ~g~~LaSgs~--DgsIrlWd~~t~~---L~g--H~~-sVtsVaFSpDG~~LASgs~DG---tVrVWDl~tg~~l~~--L~ 146 (767)
++...+.|+. ..++..||..+.+ +.. +.. ....+. -+|+..+.|+.++ .+..||.++.+-... +.
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~--~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~ 395 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVAS--INNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTY 395 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEE--ECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCC
Confidence 3444444443 2457888876542 111 111 122222 2677778887653 477888877653221 11
Q ss_pred cCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEe--ecCCCCeEEEEEcCCCCEEEEEECC------cEEEEE
Q 004217 147 GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS--RDFYRPIASIAFHASGELLAVASGH------KLYIWR 218 (767)
Q Consensus 147 gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~--l~h~~~VtsVafSPdG~~LAsgSdd------~V~VWD 218 (767)
........+.+ ++.+++.|+ .+.+||.++++.... +.....-.+++. -+|++.++|+.+ .+.+||
T Consensus 396 ~~r~~~~~~~~---~~~IYv~GG---~~e~ydp~~~~W~~~~~m~~~r~~~~~~v-~~~~IYviGG~~~~~~~~~ve~Yd 468 (480)
T PHA02790 396 YPHYKSCALVF---GRRLFLVGR---NAEFYCESSNTWTLIDDPIYPRDNPELII-VDNKLLLIGGFYRGSYIDTIEVYN 468 (480)
T ss_pred CccccceEEEE---CCEEEEECC---ceEEecCCCCcEeEcCCCCCCccccEEEE-ECCEEEEECCcCCCcccceEEEEE
Confidence 11111222233 567777764 577899887665433 222221122222 256666666632 266676
Q ss_pred cCCC
Q 004217 219 YNMR 222 (767)
Q Consensus 219 l~t~ 222 (767)
..+.
T Consensus 469 ~~~~ 472 (480)
T PHA02790 469 NRTY 472 (480)
T ss_pred CCCC
Confidence 6554
No 480
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=43.31 E-value=69 Score=28.94 Aligned_cols=46 Identities=17% Similarity=0.104 Sum_probs=32.9
Q ss_pred EeCCCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEECCc
Q 004217 168 GSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHK 213 (767)
Q Consensus 168 gS~DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSdd~ 213 (767)
+..+|.+..||..+++....+..-.-.+.|++++|+.+|+++-..+
T Consensus 33 ~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et~~ 78 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAETGR 78 (89)
T ss_dssp T---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEGGG
T ss_pred CCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEeccC
Confidence 3456889999999988766655455678999999999988887444
No 481
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=43.25 E-value=4.7e+02 Score=28.44 Aligned_cols=167 Identities=13% Similarity=0.138 Sum_probs=80.2
Q ss_pred CeEEEEeCCCCCCCCCCCCeEEEEECCC-C----CeEEEE-eCCCeEEEEECCCCeEEEEEccCCC--------------
Q 004217 91 ESLHHLRPKYCPLSPPPRSTIAAAFSPD-G----KTLAST-HGDHTVKIIDCQTGSCLKVLHGHRR-------------- 150 (767)
Q Consensus 91 gsIrlWd~~t~~L~gH~~sVtsVaFSpD-G----~~LASg-s~DGtVrVWDl~tg~~l~~L~gH~~-------------- 150 (767)
+.++.+.+....+. ....+..+.+... + .++..+ ...+-+.|+|+.+++..+.+..+..
T Consensus 45 ~li~~~~~p~~~~~-~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~ 123 (287)
T PF03022_consen 45 QLIRRYPFPPDIAP-PDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGES 123 (287)
T ss_dssp CEEEEEE--CCCS--TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEE
T ss_pred cEEEEEECChHHcc-cccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCce
Confidence 33444444332222 4556888888762 2 233333 3346899999999987666643321
Q ss_pred -----CcEEEEEccC--CCcEEEEEeCCCeEEEEECCC-----Ce---------EEEeecCC-CCeEEEEEcCCCCEEEE
Q 004217 151 -----TPWVVRFHPL--NPTIIASGSLDHEVRLWNAST-----AE---------CIGSRDFY-RPIASIAFHASGELLAV 208 (767)
Q Consensus 151 -----~V~sLafsP~--dg~lLaSgS~DGtVrIWDl~t-----g~---------~i~~l~h~-~~VtsVafSPdG~~LAs 208 (767)
.+..++.+|. +++.|.-....+. ++|-+.+ .. .+..++.. .....++++++|.++++
T Consensus 124 ~~~~dg~~gial~~~~~d~r~LYf~~lss~-~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~ly~~ 202 (287)
T PF03022_consen 124 FQWPDGIFGIALSPISPDGRWLYFHPLSSR-KLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGNLYFT 202 (287)
T ss_dssp EEETTSEEEEEE-TTSTTS-EEEEEETT-S-EEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTEEEEE
T ss_pred EecCCCccccccCCCCCCccEEEEEeCCCC-cEEEEEHHHhhCccccccccccccceeccccCCCCceEEECCCCcEEEe
Confidence 1333333321 1123332222211 2222211 00 11122222 35567888998887766
Q ss_pred EEC-CcEEEEEcCCCccccCCeEEec-C--CCCeEEEEEcc--CCCeEEEEEeeCCc
Q 004217 209 ASG-HKLYIWRYNMREETSSPRIVLR-T--RRSLRAVHFHP--HAAPLLLTAEVNDL 259 (767)
Q Consensus 209 gSd-d~V~VWDl~t~~~~~~~~~l~~-h--~~~VtsVaFSP--DG~~LlaSgsvwdl 259 (767)
--. +.|..||..+.-.......+.. . -..+..+.+.+ +|...+.+.....+
T Consensus 203 ~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~snrl~~~ 259 (287)
T PF03022_consen 203 DVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSNRLQRF 259 (287)
T ss_dssp ECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-S--SS
T ss_pred cCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEECcchHh
Confidence 654 4599999887332111112222 1 34778999999 88877777664443
No 482
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=41.29 E-value=2e+02 Score=35.71 Aligned_cols=93 Identities=18% Similarity=0.170 Sum_probs=57.0
Q ss_pred cEEEEEccCCCcEEEEEeCCC-----eEEEEECC---CCeEEEeecCCCCeEEEEEcCCCCEEEEEECCcEEEEEcCCCc
Q 004217 152 PWVVRFHPLNPTIIASGSLDH-----EVRLWNAS---TAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMRE 223 (767)
Q Consensus 152 V~sLafsP~dg~lLaSgS~DG-----tVrIWDl~---tg~~i~~l~h~~~VtsVafSPdG~~LAsgSdd~V~VWDl~t~~ 223 (767)
-..++|-| .+..+++-..|| .|+.+.-+ .|+.-...+....+..++|+-....++++-.+.|++|-..+-.
T Consensus 249 e~~LSWkp-qgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s~vlav~~~n~~~lwttkNyh 327 (1243)
T COG5290 249 EHQLSWKP-QGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLSTVLAVAEGNLLKLWTTKNYH 327 (1243)
T ss_pred hhcccccc-CCceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHHHHHHHhhcceEEEEEccceE
Confidence 34588999 888888876554 35555422 2332222334455677888888788888888889999755432
Q ss_pred cccCCeEEecCCCCeEEEEEccCCC
Q 004217 224 ETSSPRIVLRTRRSLRAVHFHPHAA 248 (767)
Q Consensus 224 ~~~~~~~l~~h~~~VtsVaFSPDG~ 248 (767)
- .....-.-..+.-+.|+|..+
T Consensus 328 W---YLK~e~~ip~~s~vkwhpe~~ 349 (1243)
T COG5290 328 W---YLKVERQIPGISYVKWHPEEK 349 (1243)
T ss_pred E---EEEEeecCCCcceeeeccccC
Confidence 1 111122234567788988654
No 483
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=39.77 E-value=56 Score=23.91 Aligned_cols=33 Identities=30% Similarity=0.419 Sum_probs=0.0
Q ss_pred CCCCCCCCeEEEEECCCCCeEEEEeCC---CeEEEE
Q 004217 102 PLSPPPRSTIAAAFSPDGKTLASTHGD---HTVKII 134 (767)
Q Consensus 102 ~L~gH~~sVtsVaFSpDG~~LASgs~D---GtVrVW 134 (767)
++......-....|||||++|+.++.. |.-.||
T Consensus 3 ~~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 3 QLTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp EES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CcccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
No 484
>PLN02153 epithiospecifier protein
Probab=38.11 E-value=5.7e+02 Score=27.96 Aligned_cols=65 Identities=9% Similarity=0.117 Sum_probs=35.7
Q ss_pred CCCeEEEEeCC-----------CeEEEEECCCCeEEEEEccC------CCCcEEEEEccCCCcEEEEEeCC---------
Q 004217 118 DGKTLASTHGD-----------HTVKIIDCQTGSCLKVLHGH------RRTPWVVRFHPLNPTIIASGSLD--------- 171 (767)
Q Consensus 118 DG~~LASgs~D-----------GtVrVWDl~tg~~l~~L~gH------~~~V~sLafsP~dg~lLaSgS~D--------- 171 (767)
++++++.|+.+ ..|.+||.++.+-. .+... ......+.+ ++++++.++.+
T Consensus 137 ~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~-~l~~~~~~~~~r~~~~~~~~---~~~iyv~GG~~~~~~~gG~~ 212 (341)
T PLN02153 137 ENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWV-QLPDPGENFEKRGGAGFAVV---QGKIWVVYGFATSILPGGKS 212 (341)
T ss_pred CCEEEEECCccCCCccCCCcccceEEEEECCCCeEe-eCCCCCCCCCCCCcceEEEE---CCeEEEEeccccccccCCcc
Confidence 56777777753 25778898876532 22211 111122222 45666655432
Q ss_pred ----CeEEEEECCCCeEEE
Q 004217 172 ----HEVRLWNASTAECIG 186 (767)
Q Consensus 172 ----GtVrIWDl~tg~~i~ 186 (767)
..|.+||..+.+...
T Consensus 213 ~~~~~~v~~yd~~~~~W~~ 231 (341)
T PLN02153 213 DYESNAVQFFDPASGKWTE 231 (341)
T ss_pred ceecCceEEEEcCCCcEEe
Confidence 458889988766544
No 485
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=37.59 E-value=71 Score=34.16 Aligned_cols=83 Identities=12% Similarity=0.078 Sum_probs=49.8
Q ss_pred EEEEECCCCeEEEe-ecCCCCeEEEEEcCCCCEEEEEEC--C--cEEEEEcCCCc---cccCCeEEecCCCCeEEEEEcc
Q 004217 174 VRLWNASTAECIGS-RDFYRPIASIAFHASGELLAVASG--H--KLYIWRYNMRE---ETSSPRIVLRTRRSLRAVHFHP 245 (767)
Q Consensus 174 VrIWDl~tg~~i~~-l~h~~~VtsVafSPdG~~LAsgSd--d--~V~VWDl~t~~---~~~~~~~l~~h~~~VtsVaFSP 245 (767)
-.+||+.+++.... .....-+.+-.|-+||++|.+|++ + ++++++..... .............+=-.+.--|
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~ 127 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP 127 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence 45889988765433 223344455568899999999984 2 29999865411 1110001122234445666778
Q ss_pred CCCeEEEEEee
Q 004217 246 HAAPLLLTAEV 256 (767)
Q Consensus 246 DG~~LlaSgsv 256 (767)
||+.|+.+|..
T Consensus 128 DG~vlIvGG~~ 138 (243)
T PF07250_consen 128 DGRVLIVGGSN 138 (243)
T ss_pred CCCEEEEeCcC
Confidence 99988877764
No 486
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=36.26 E-value=1.9e+02 Score=36.60 Aligned_cols=80 Identities=6% Similarity=0.047 Sum_probs=57.3
Q ss_pred CCeEEEEECCCCeEEEe-ecCCCCeEEEEEcCCCCEEEE-EE-CC---c--EEEEEcCCCccccCCeEEecCCCCeEEEE
Q 004217 171 DHEVRLWNASTAECIGS-RDFYRPIASIAFHASGELLAV-AS-GH---K--LYIWRYNMREETSSPRIVLRTRRSLRAVH 242 (767)
Q Consensus 171 DGtVrIWDl~tg~~i~~-l~h~~~VtsVafSPdG~~LAs-gS-dd---~--V~VWDl~t~~~~~~~~~l~~h~~~VtsVa 242 (767)
.+.+.+-|......... +.+...|.+-+|||||++||- .+ .+ + |++-|+++.... +..+.--...|..-.
T Consensus 328 ~~~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~--~vkl~ve~aaiprwr 405 (912)
T TIGR02171 328 TGNLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSG--LVKLPVENAAIPRWR 405 (912)
T ss_pred CCeEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCC--ceEeecccccccceE
Confidence 35788888887666655 788899999999999999987 33 33 3 999999876532 223434456677777
Q ss_pred EccCCCeEEE
Q 004217 243 FHPHAAPLLL 252 (767)
Q Consensus 243 FSPDG~~Lla 252 (767)
...+|...++
T Consensus 406 v~e~gdt~iv 415 (912)
T TIGR02171 406 VLENGDTVIV 415 (912)
T ss_pred ecCCCCeEEE
Confidence 7788876554
No 487
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=34.88 E-value=81 Score=21.93 Aligned_cols=25 Identities=28% Similarity=0.290 Sum_probs=19.9
Q ss_pred eEEEEeCCCeEEEEECCCCeEEEEE
Q 004217 121 TLASTHGDHTVKIIDCQTGSCLKVL 145 (767)
Q Consensus 121 ~LASgs~DGtVrVWDl~tg~~l~~L 145 (767)
.++.++.++.+..+|.++|+.+..+
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEEc
Confidence 5777788899999999888876553
No 488
>PRK13614 lipoprotein LpqB; Provisional
Probab=34.44 E-value=8.2e+02 Score=29.61 Aligned_cols=140 Identities=16% Similarity=0.155 Sum_probs=78.4
Q ss_pred CeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEE-EEEccCCCCcEEEEEccCCCcEEEEEeCCC--eEEEEECC-CCeE
Q 004217 109 STIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCL-KVLHGHRRTPWVVRFHPLNPTIIASGSLDH--EVRLWNAS-TAEC 184 (767)
Q Consensus 109 sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l-~~L~gH~~~V~sLafsP~dg~lLaSgS~DG--tVrIWDl~-tg~~ 184 (767)
.+.+++.|+|++.+|....|+. .+|-...+... ..+.+ ..++.-.|.+ ++ .+-+...+. .|..+.-. +++.
T Consensus 344 ~~~s~avS~~g~~~A~~~~~~~-~l~~~~~g~~~~~~~~g--~~Lt~PS~d~-~g-~vWtv~~g~~~~vv~~~~~g~~~~ 418 (573)
T PRK13614 344 GPASPAESPVSQTVAFLNGSRT-TLYTVSPGQPARALTSG--STLTRPSFSP-QD-WVWTAGPGGNGRIVAYRPTGVAEG 418 (573)
T ss_pred cccceeecCCCceEEEecCCCc-EEEEecCCCcceeeecC--CCccCCcccC-CC-CEEEeeCCCCceEEEEecCCCccc
Confidence 6788999999999988877762 33432223333 23443 2466677877 44 555544433 44443321 2111
Q ss_pred -------EEeecCC-CCeEEEEEcCCCCEEEEEE--CCc--EEEEEcC---CCc--cccCCeEEecCCCCeEEEEEccCC
Q 004217 185 -------IGSRDFY-RPIASIAFHASGELLAVAS--GHK--LYIWRYN---MRE--ETSSPRIVLRTRRSLRAVHFHPHA 247 (767)
Q Consensus 185 -------i~~l~h~-~~VtsVafSPdG~~LAsgS--dd~--V~VWDl~---t~~--~~~~~~~l~~h~~~VtsVaFSPDG 247 (767)
+..-... ..|..+..|+||..++.-. +++ |+|=-+. .+. .+.....+ .....+.++.|..++
T Consensus 419 ~~~~~~~v~~~~l~g~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~G~P~~L~~~~~~-~~~~~~~sl~W~~~~ 497 (573)
T PRK13614 419 AQAPTVTLTADWLAGRTVKELRVSREGVRALVISEQNGKSRVQVAGIVRNEDGTPRELTAPITL-AADSDADTGAWVGDS 497 (573)
T ss_pred ccccceeecccccCCCeeEEEEECCCccEEEEEEEeCCccEEEEEEEEeCCCCCeEEccCceec-ccCCCcceeEEcCCC
Confidence 1111122 3599999999998665544 444 6654432 222 11112222 334688999999999
Q ss_pred CeEEEEE
Q 004217 248 APLLLTA 254 (767)
Q Consensus 248 ~~LlaSg 254 (767)
..++.+.
T Consensus 498 sl~V~~~ 504 (573)
T PRK13614 498 TVVVTKA 504 (573)
T ss_pred EEEEEec
Confidence 8555543
No 489
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=33.98 E-value=5.7e+02 Score=27.67 Aligned_cols=50 Identities=4% Similarity=-0.102 Sum_probs=28.3
Q ss_pred CeEEEEeCCCCC---CCC--CCCCeEEEEECCCCCeEEEEeCCC----eEEEEECCCCe
Q 004217 91 ESLHHLRPKYCP---LSP--PPRSTIAAAFSPDGKTLASTHGDH----TVKIIDCQTGS 140 (767)
Q Consensus 91 gsIrlWd~~t~~---L~g--H~~sVtsVaFSpDG~~LASgs~DG----tVrVWDl~tg~ 140 (767)
..+..||..+.+ +.. ........+...++++.+.|+.++ .+.+||.++.+
T Consensus 139 ~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 139 NKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred ceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence 457888887652 221 111122222334677788887653 35688988765
No 490
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=32.89 E-value=17 Score=24.85 Aligned_cols=9 Identities=56% Similarity=0.984 Sum_probs=7.4
Q ss_pred ccCccccee
Q 004217 572 HFSPCGRYL 580 (767)
Q Consensus 572 ~~~~~~~~~ 580 (767)
=|||.||.+
T Consensus 7 ~FSp~Grl~ 15 (23)
T PF10584_consen 7 TFSPDGRLF 15 (23)
T ss_dssp SBBTTSSBH
T ss_pred eECCCCeEE
Confidence 499999974
No 491
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=32.51 E-value=9.4e+02 Score=31.19 Aligned_cols=166 Identities=14% Similarity=0.113 Sum_probs=0.0
Q ss_pred eEEEEeCCCC--------CCCCCCCCeEEEEECC-CCC-eEEEEeC-----------CCeEEEEEC-CCCeEEEEEccCC
Q 004217 92 SLHHLRPKYC--------PLSPPPRSTIAAAFSP-DGK-TLASTHG-----------DHTVKIIDC-QTGSCLKVLHGHR 149 (767)
Q Consensus 92 sIrlWd~~t~--------~L~gH~~sVtsVaFSp-DG~-~LASgs~-----------DGtVrVWDl-~tg~~l~~L~gH~ 149 (767)
.|++.|..++ +...-.-.|.++.|+. +.. ++++|.. +|.++.|++ +.|+.+.-+....
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~ 933 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTE 933 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccC
Q ss_pred CCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCCC-CeEEEEEcCCCCEEEEEE-CCcEEEEEcCCCccccC
Q 004217 150 RTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYR-PIASIAFHASGELLAVAS-GHKLYIWRYNMREETSS 227 (767)
Q Consensus 150 ~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~-~VtsVafSPdG~~LAsgS-dd~V~VWDl~t~~~~~~ 227 (767)
-.-.-.+.+| -.. .+-++....+++||+-..+.++...... +..-...--.+..+++|. .+.+.++-.+.....-.
T Consensus 934 ~~~~v~Ai~~-f~~-~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~~~RI~VgD~qeSV~~~~y~~~~n~l~ 1011 (1205)
T KOG1898|consen 934 IPGPVGAICP-FQG-RVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTYGARIVVGDIQESVHFVRYRREDNQLI 1011 (1205)
T ss_pred CCccceEEec-cCC-EEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEeecceEEEEeeccceEEEEEEecCCCeEE
Q ss_pred CeEEecCCCCeEEEEEccCCCeEEEEEe---eCCcC
Q 004217 228 PRIVLRTRRSLRAVHFHPHAAPLLLTAE---VNDLD 260 (767)
Q Consensus 228 ~~~l~~h~~~VtsVaFSPDG~~LlaSgs---vwdl~ 260 (767)
...-..-...|+++.+-..+. ++.+-+ +|-++
T Consensus 1012 ~fadD~~pR~Vt~~~~lD~~t-vagaDrfGNi~~vR 1046 (1205)
T KOG1898|consen 1012 VFADDPVPRHVTALELLDYDT-VAGADRFGNIAVVR 1046 (1205)
T ss_pred EEeCCCccceeeEEEEecCCc-eeeccccCcEEEEE
No 492
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=31.86 E-value=2.5e+02 Score=30.93 Aligned_cols=101 Identities=14% Similarity=0.088 Sum_probs=71.7
Q ss_pred CcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEe-ecCCCCeEEEEEcCCCCEEEEEECCcEEEEEcCCCccccCCe
Q 004217 151 TPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-RDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPR 229 (767)
Q Consensus 151 ~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~-l~h~~~VtsVafSPdG~~LAsgSdd~V~VWDl~t~~~~~~~~ 229 (767)
....++-.| ++...+++...+.|--.|-++|+.... +.....-..|...|||..-++-+...|.-.|-++.+......
T Consensus 63 ap~dvapap-dG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~R~dpkt~evt~f~l 141 (353)
T COG4257 63 APFDVAPAP-DGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGLAIGRLDPKTLEVTRFPL 141 (353)
T ss_pred CccccccCC-CCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcceeEEecCcccceEEeec
Confidence 345677778 788888888888888888889887765 666677778889999987766555567777776665543222
Q ss_pred EEecCCCCeEEEEEccCCCeEEE
Q 004217 230 IVLRTRRSLRAVHFHPHAAPLLL 252 (767)
Q Consensus 230 ~l~~h~~~VtsVaFSPDG~~Lla 252 (767)
.............|.++|...++
T Consensus 142 p~~~a~~nlet~vfD~~G~lWFt 164 (353)
T COG4257 142 PLEHADANLETAVFDPWGNLWFT 164 (353)
T ss_pred ccccCCCcccceeeCCCccEEEe
Confidence 22233567888999999994443
No 493
>PHA02790 Kelch-like protein; Provisional
Probab=31.39 E-value=8.9e+02 Score=28.18 Aligned_cols=100 Identities=11% Similarity=0.002 Sum_probs=51.8
Q ss_pred CCCCeEEEEeCC--CeEEEEECCCCeEEE--EEccCCCCcEEEEEccCCCcEEEEEeCCC---eEEEEECCCCeEEEee-
Q 004217 117 PDGKTLASTHGD--HTVKIIDCQTGSCLK--VLHGHRRTPWVVRFHPLNPTIIASGSLDH---EVRLWNASTAECIGSR- 188 (767)
Q Consensus 117 pDG~~LASgs~D--GtVrVWDl~tg~~l~--~L~gH~~~V~sLafsP~dg~lLaSgS~DG---tVrIWDl~tg~~i~~l- 188 (767)
-+++..+.|+.+ ..+..||..+++-.. .+.........+.+ ++++.+.|+.++ ++..||.++.+....-
T Consensus 317 ~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~---~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~ 393 (480)
T PHA02790 317 ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASI---NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPS 393 (480)
T ss_pred ECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEE---CCEEEEecCcCCCCccEEEEeCCCCEEEeCCC
Confidence 367777888764 358888877654321 12111111222233 678888887653 4778888876554431
Q ss_pred -cCCCCeEEEEEcCCCCEEEEEECCcEEEEEcCCC
Q 004217 189 -DFYRPIASIAFHASGELLAVASGHKLYIWRYNMR 222 (767)
Q Consensus 189 -~h~~~VtsVafSPdG~~LAsgSdd~V~VWDl~t~ 222 (767)
.....-.+++ .-+|++.+.|+ .+.+||.++.
T Consensus 394 m~~~r~~~~~~-~~~~~IYv~GG--~~e~ydp~~~ 425 (480)
T PHA02790 394 TYYPHYKSCAL-VFGRRLFLVGR--NAEFYCESSN 425 (480)
T ss_pred CCCccccceEE-EECCEEEEECC--ceEEecCCCC
Confidence 1111111221 22455555552 3566766543
No 494
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=31.33 E-value=79 Score=38.68 Aligned_cols=100 Identities=13% Similarity=0.184 Sum_probs=59.2
Q ss_pred CCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEECCcEEEEEcCCCccccCC
Q 004217 149 RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSP 228 (767)
Q Consensus 149 ~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSdd~V~VWDl~t~~~~~~~ 228 (767)
...++++.-+| ++.-++++..||+|++|+....+..+......+-..+.|...|-+.+ .++.++.-|.-+.--+.+ .
T Consensus 14 ~e~~~aiqshp-~~~s~v~~~~d~si~lfn~~~r~qski~~~~~p~~nlv~tnhgl~~~-tsdrr~la~~~dgvvqqq-f 90 (1636)
T KOG3616|consen 14 DEFTTAIQSHP-GGQSFVLAHQDGSIILFNFIPRRQSKICEEAKPKENLVFTNHGLVTA-TSDRRALAWKEDGVVQQQ-F 90 (1636)
T ss_pred cceeeeeeecC-CCceEEEEecCCcEEEEeecccchhhhhhhcCCccceeeeccceEEE-eccchhheeeccCcchhh-c
Confidence 34567888899 89999999999999999987766544444444555566765553333 334446666433211111 0
Q ss_pred eEEecCCCCeEEEEEccCCCeEE
Q 004217 229 RIVLRTRRSLRAVHFHPHAAPLL 251 (767)
Q Consensus 229 ~~l~~h~~~VtsVaFSPDG~~Ll 251 (767)
-..........++...|..+.++
T Consensus 91 dyndqsekefss~~cdptaqnvv 113 (1636)
T KOG3616|consen 91 DYNDQSEKEFSSILCDPTAQNVV 113 (1636)
T ss_pred cccchhhhhccceecCchhhhhh
Confidence 01111233456667777666544
No 495
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=30.37 E-value=6.5e+02 Score=26.80 Aligned_cols=123 Identities=13% Similarity=0.088 Sum_probs=70.3
Q ss_pred CEEEEEeCCCeEEEEeCCCCC-CCCCC--CCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEE----EEEccCC-CCcE
Q 004217 82 RGLASWVEAESLHHLRPKYCP-LSPPP--RSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCL----KVLHGHR-RTPW 153 (767)
Q Consensus 82 ~~LaSgs~DgsIrlWd~~t~~-L~gH~--~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l----~~L~gH~-~~V~ 153 (767)
.+..+| .++.-.++|..+.+ +..|. +.=+.++ .|++.|..+....+++.-|.++-... .++.+.. ..++
T Consensus 103 ~y~LTw-~egvaf~~d~~t~~~lg~~~y~GeGWgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LN 179 (262)
T COG3823 103 FYQLTW-KEGVAFKYDADTLEELGRFSYEGEGWGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLN 179 (262)
T ss_pred EEEEEe-ccceeEEEChHHhhhhcccccCCcceeee--cCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeeccccc
Confidence 344455 56677778877653 33332 2233333 35666776666667777776553322 2333211 2344
Q ss_pred EEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec-------------CCCCeEEEEEcCCCC-EEEEE
Q 004217 154 VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-------------FYRPIASIAFHASGE-LLAVA 209 (767)
Q Consensus 154 sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~-------------h~~~VtsVafSPdG~-~LAsg 209 (767)
.+.|- ++.+++-.-.+..|...|..+|+.+..++ +..-.+.+++.|++. ++++|
T Consensus 180 ELE~V--dG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 180 ELEWV--DGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred ceeee--ccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 55664 46666666666667777777777765532 334567899999884 55555
No 496
>PF04651 Pox_A12: Poxvirus A12 protein; InterPro: IPR006744 This family contains vaccinia virus protein A12 and its homologues. VVA12 is a virion protein though its function is unknown.
Probab=30.29 E-value=33 Score=34.72 Aligned_cols=21 Identities=48% Similarity=0.738 Sum_probs=16.0
Q ss_pred CCCceeeee-ccceEEEEEecC
Q 004217 722 VGGGLVYGT-KEGKLRILQFDG 742 (767)
Q Consensus 722 ~~~~~~~~~-~~~~~~~~~~~~ 742 (767)
-+|=||||| |+|||-|--+=|
T Consensus 115 N~GKIVYGtvkdGkLeVqG~VG 136 (189)
T PF04651_consen 115 NCGKIVYGTVKDGKLEVQGTVG 136 (189)
T ss_pred cCCcEEEEEeecCeEEeeeeec
Confidence 367899998 899998865443
No 497
>cd00190 Tryp_SPc Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. Alignment contains also inactive enzymes that have substitutions of the catalytic triad residues.
Probab=29.27 E-value=49 Score=33.00 Aligned_cols=75 Identities=24% Similarity=0.340 Sum_probs=41.0
Q ss_pred cchhhhhh-HhhhccceeEEEeccCccceEEeecccccccceeeEEcCceeeeeEEEEEEEE---------ecCcEEEEe
Q 004217 636 FGTVLTSR-AIRAAHCLTSIQFSPTSENLLLAYGRRHSSLLKSVLIDGEITVPTYTILEVYR---------VSDMELVRV 705 (767)
Q Consensus 636 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~ 705 (767)
-|.++..+ .++||||+..-. +....+.+|.-.+.. . +.....+.|.+++. -.|+.|++.
T Consensus 28 ~GtlIs~~~VLTaAhC~~~~~--~~~~~v~~g~~~~~~-------~--~~~~~~~~v~~~~~hp~y~~~~~~~DiAll~L 96 (232)
T cd00190 28 GGSLISPRWVLTAAHCVYSSA--PSNYTVRLGSHDLSS-------N--EGGGQVIKVKKVIVHPNYNPSTYDNDIALLKL 96 (232)
T ss_pred EEEEeeCCEEEECHHhcCCCC--CccEEEEeCcccccC-------C--CCceEEEEEEEEEECCCCCCCCCcCCEEEEEE
Confidence 47777766 899999997543 444555554332221 0 11233455555543 367888885
Q ss_pred ecCC--CCceeeeEeccc
Q 004217 706 LPSA--EDEVNVACFHPS 721 (767)
Q Consensus 706 ~~~~--~~~~~~~~~~~~ 721 (767)
=... .+.|..+|+...
T Consensus 97 ~~~~~~~~~v~picl~~~ 114 (232)
T cd00190 97 KRPVTLSDNVRPICLPSS 114 (232)
T ss_pred CCcccCCCcccceECCCc
Confidence 3222 223666776543
No 498
>PRK13613 lipoprotein LpqB; Provisional
Probab=28.95 E-value=1.1e+03 Score=28.59 Aligned_cols=140 Identities=12% Similarity=0.053 Sum_probs=78.1
Q ss_pred CeEEEEECCCCCeEEEEeCCC-eEEEEECCCCeE-----EEEEccCCCCcEEEEEccCCCcEEEEEeC--CC--eEEEEE
Q 004217 109 STIAAAFSPDGKTLASTHGDH-TVKIIDCQTGSC-----LKVLHGHRRTPWVVRFHPLNPTIIASGSL--DH--EVRLWN 178 (767)
Q Consensus 109 sVtsVaFSpDG~~LASgs~DG-tVrVWDl~tg~~-----l~~L~gH~~~V~sLafsP~dg~lLaSgS~--DG--tVrIWD 178 (767)
.+.+++.|+++..+|....++ .+++..+..+.. ...+. ....+.-.|.+ ++ .+-+... ++ .+++..
T Consensus 364 ~~~s~avS~~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~~--~~~Lt~PS~d~-~g-~vWtvd~~~~~~~vl~v~~ 439 (599)
T PRK13613 364 PLRRVAVSRDESRAAGISADGDSVYVGSLTPGASIGVHSWGVTA--DGRLTSPSWDG-RG-DLWVVDRDPADPRLLWLLQ 439 (599)
T ss_pred CccceEEcCCCceEEEEcCCCcEEEEeccCCCCccccccceeec--cCcccCCcCcC-CC-CEEEecCCCCCceEEEEEc
Confidence 688999999999988877665 566655533322 12233 23466677777 44 3434322 22 255554
Q ss_pred CCCCeEEEe--ecCC-CCeEEEEEcCCCCEEEEEEC----CcEEEEEcCC---Cc-cccCCeEEecCCCCeEEEEEccCC
Q 004217 179 ASTAECIGS--RDFY-RPIASIAFHASGELLAVASG----HKLYIWRYNM---RE-ETSSPRIVLRTRRSLRAVHFHPHA 247 (767)
Q Consensus 179 l~tg~~i~~--l~h~-~~VtsVafSPdG~~LAsgSd----d~V~VWDl~t---~~-~~~~~~~l~~h~~~VtsVaFSPDG 247 (767)
- +++.... .... ..|..+..|+||..++.-.+ ++|+|=-+.. +. .+..+..+......+.+++|..++
T Consensus 440 ~-~G~~~~V~~~~l~g~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~~~l~~~~~l~~~l~~v~~~~W~~~~ 518 (599)
T PRK13613 440 G-DGEPVEVRTPELDGHRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAVVSVEEFRSLAPELEDVTDMSWAGDS 518 (599)
T ss_pred C-CCcEEEeeccccCCCEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCcEEeeccEEeccCCCccceeEEcCCC
Confidence 3 4444321 2233 38999999999986665442 3354443321 21 122222222223458999999999
Q ss_pred CeEEEE
Q 004217 248 APLLLT 253 (767)
Q Consensus 248 ~~LlaS 253 (767)
..++.+
T Consensus 519 sL~Vlg 524 (599)
T PRK13613 519 QLVVLG 524 (599)
T ss_pred EEEEEe
Confidence 855533
No 499
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=28.02 E-value=7.7e+02 Score=26.85 Aligned_cols=59 Identities=17% Similarity=0.160 Sum_probs=39.2
Q ss_pred CCCeEEEEeCCCeEEEEECCC--CeEEEEEccCCCCcEEEEEccCCCcEEEEEe-CCCeEEEEECC
Q 004217 118 DGKTLASTHGDHTVKIIDCQT--GSCLKVLHGHRRTPWVVRFHPLNPTIIASGS-LDHEVRLWNAS 180 (767)
Q Consensus 118 DG~~LASgs~DGtVrVWDl~t--g~~l~~L~gH~~~V~sLafsP~dg~lLaSgS-~DGtVrIWDl~ 180 (767)
++++|+.|.++|.. +.|+.. ++..+.+ +...|.++...+ ..++|++-+ ....++.+|+.
T Consensus 12 ~~~~lL~GTe~Gly-~~~~~~~~~~~~kl~--~~~~v~q~~v~~-~~~lLi~Lsgk~~~L~~~~L~ 73 (302)
T smart00036 12 DGKWLLVGTEEGLY-VLNISDQPGTLEKLI--GRRSVTQIWVLE-ENNVLLMISGKKPQLYSHPLS 73 (302)
T ss_pred CCcEEEEEeCCceE-EEEcccCCCCeEEec--CcCceEEEEEEh-hhCEEEEEeCCcceEEEEEHH
Confidence 44689999998854 445554 3333333 467899999998 666655544 34459999984
No 500
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=27.87 E-value=1.3e+02 Score=22.25 Aligned_cols=26 Identities=19% Similarity=0.212 Sum_probs=22.1
Q ss_pred eEEEEeCCCeEEEEECCCCeEEEEEc
Q 004217 121 TLASTHGDHTVKIIDCQTGSCLKVLH 146 (767)
Q Consensus 121 ~LASgs~DGtVrVWDl~tg~~l~~L~ 146 (767)
.++.++.||.|.-.|.++|+.+..++
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~ 27 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQ 27 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEE
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeee
Confidence 45666899999999999999888775
Done!